Query 003509
Match_columns 814
No_of_seqs 459 out of 2489
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 00:47:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003509.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003509hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02727 NAD kinase 100.0 1E-199 3E-204 1713.4 52.1 781 7-809 1-797 (986)
2 PF13350 Y_phosphatase3: Tyros 99.9 5.1E-25 1.1E-29 215.8 12.0 132 247-387 1-164 (164)
3 PLN02935 Bifunctional NADH kin 99.9 1.2E-21 2.6E-26 220.7 11.7 138 672-809 176-316 (508)
4 PF03162 Y_phosphatase2: Tyros 99.8 2.1E-20 4.6E-25 185.2 11.9 123 244-385 3-129 (164)
5 TIGR01244 conserved hypothetic 99.8 6.1E-20 1.3E-24 176.0 14.2 113 267-383 7-121 (135)
6 KOG2178 Predicted sugar kinase 99.8 2.9E-20 6.4E-25 202.4 9.1 149 661-810 65-223 (409)
7 PRK14077 pnk inorganic polypho 99.8 9.7E-20 2.1E-24 194.9 12.0 111 689-810 9-119 (287)
8 PRK04539 ppnK inorganic polyph 99.8 8.3E-20 1.8E-24 196.1 10.9 117 686-809 1-122 (296)
9 PRK03378 ppnK inorganic polyph 99.8 2.4E-19 5.3E-24 192.2 12.1 117 686-810 1-118 (292)
10 PRK03372 ppnK inorganic polyph 99.8 3.1E-19 6.6E-24 192.6 11.8 121 688-810 3-127 (306)
11 PRK02649 ppnK inorganic polyph 99.8 4.2E-19 9E-24 191.5 11.7 118 690-809 1-122 (305)
12 PRK01911 ppnK inorganic polyph 99.8 5.3E-19 1.2E-23 189.6 11.6 116 692-810 2-119 (292)
13 PRK02155 ppnK NAD(+)/NADH kina 99.8 2.7E-18 5.8E-23 184.1 11.8 116 686-809 1-117 (291)
14 PRK14076 pnk inorganic polypho 99.7 3.5E-18 7.6E-23 197.8 12.2 119 684-810 284-403 (569)
15 PF04273 DUF442: Putative phos 99.7 1E-17 2.3E-22 156.4 10.5 100 267-370 7-108 (110)
16 PRK01231 ppnK inorganic polyph 99.7 2.5E-17 5.4E-22 177.1 12.0 113 689-809 3-116 (295)
17 PRK01185 ppnK inorganic polyph 99.7 6E-17 1.3E-21 172.3 11.6 102 692-810 2-104 (271)
18 PF01513 NAD_kinase: ATP-NAD k 99.7 5.8E-17 1.3E-21 172.7 9.0 118 692-810 1-131 (285)
19 PRK04885 ppnK inorganic polyph 99.7 9.5E-17 2.1E-21 170.3 9.8 89 692-810 2-92 (265)
20 PRK03501 ppnK inorganic polyph 99.7 1.2E-16 2.7E-21 169.3 10.5 92 690-809 2-95 (264)
21 PRK02231 ppnK inorganic polyph 99.6 2.4E-16 5.2E-21 167.8 9.1 96 707-810 2-97 (272)
22 PRK03708 ppnK inorganic polyph 99.6 6.3E-16 1.4E-20 164.9 11.8 108 692-810 2-111 (277)
23 COG3453 Uncharacterized protei 99.6 2.4E-15 5.2E-20 141.4 12.4 111 267-381 8-120 (130)
24 COG0061 nadF NAD kinase [Coenz 99.6 1.3E-15 2.9E-20 162.6 11.4 109 691-810 1-110 (281)
25 PRK14075 pnk inorganic polypho 99.6 2.8E-15 6.1E-20 158.3 10.6 92 692-810 2-93 (256)
26 PRK00561 ppnK inorganic polyph 99.6 2.5E-15 5.4E-20 159.0 10.1 86 692-809 2-88 (259)
27 PRK02645 ppnK inorganic polyph 99.6 4.9E-15 1.1E-19 160.0 11.3 109 689-810 2-114 (305)
28 KOG1572 Predicted protein tyro 99.5 2E-13 4.4E-18 141.3 12.7 126 242-386 54-187 (249)
29 PLN02929 NADH kinase 99.5 1.2E-13 2.5E-18 149.0 9.5 87 702-809 31-135 (301)
30 smart00195 DSPc Dual specifici 99.5 9.8E-13 2.1E-17 124.4 14.0 114 267-391 6-123 (138)
31 COG2365 Protein tyrosine/serin 99.4 8.7E-14 1.9E-18 146.4 6.9 130 266-396 52-185 (249)
32 PRK04761 ppnK inorganic polyph 99.4 1.1E-13 2.3E-18 145.8 6.1 56 754-809 24-80 (246)
33 cd00127 DSPc Dual specificity 99.4 1.9E-12 4.1E-17 121.6 13.4 114 267-389 7-124 (139)
34 PTZ00393 protein tyrosine phos 99.3 3.2E-11 7E-16 126.2 12.5 106 277-390 106-213 (241)
35 PTZ00242 protein tyrosine phos 99.3 6.2E-11 1.3E-15 118.0 13.1 114 268-389 17-141 (166)
36 PF00782 DSPc: Dual specificit 99.2 2.9E-11 6.2E-16 113.4 7.5 113 269-390 1-117 (133)
37 PF05706 CDKN3: Cyclin-depende 99.2 3.6E-11 7.7E-16 119.8 8.4 101 277-380 61-168 (168)
38 PRK12361 hypothetical protein; 99.1 3.9E-10 8.4E-15 130.5 14.9 123 267-396 100-226 (547)
39 TIGR00147 lipid kinase, YegS/R 98.7 2.4E-08 5.2E-13 106.3 7.8 107 690-809 1-115 (293)
40 KOG1720 Protein tyrosine phosp 98.7 4.2E-08 9.1E-13 100.8 9.2 96 280-383 87-184 (225)
41 PF14566 PTPlike_phytase: Inos 98.3 1.2E-06 2.7E-11 85.9 7.3 61 308-368 84-145 (149)
42 COG2453 CDC14 Predicted protei 98.2 6.8E-06 1.5E-10 82.9 8.8 77 312-388 68-148 (180)
43 KOG2836 Protein tyrosine phosp 98.2 1.3E-05 2.9E-10 77.9 10.2 97 280-384 34-134 (173)
44 KOG4180 Predicted kinase [Gene 98.1 3.5E-06 7.6E-11 91.4 6.0 56 753-809 103-164 (395)
45 KOG1719 Dual specificity phosp 98.0 2.1E-05 4.6E-10 78.1 9.2 111 278-393 42-156 (183)
46 KOG1716 Dual specificity phosp 98.0 3.7E-05 8E-10 82.9 10.4 118 266-392 79-201 (285)
47 smart00404 PTPc_motif Protein 97.8 2.1E-05 4.5E-10 69.6 5.0 52 319-370 5-62 (105)
48 smart00012 PTPc_DSPc Protein t 97.8 2.1E-05 4.5E-10 69.6 5.0 52 319-370 5-62 (105)
49 KOG1718 Dual specificity phosp 97.7 0.00029 6.3E-09 71.1 10.5 103 267-380 22-128 (198)
50 KOG1717 Dual specificity phosp 97.6 0.00018 3.9E-09 76.9 8.9 107 266-381 176-286 (343)
51 PRK13057 putative lipid kinase 97.4 0.00037 7.9E-09 74.7 7.0 101 695-809 2-106 (287)
52 PRK11914 diacylglycerol kinase 97.3 0.0014 3.1E-08 70.8 10.2 108 689-809 7-121 (306)
53 cd00047 PTPc Protein tyrosine 96.9 0.0018 4E-08 66.7 6.4 53 333-385 148-210 (231)
54 PRK00861 putative lipid kinase 96.9 0.0035 7.6E-08 67.6 8.7 105 690-809 2-113 (300)
55 PRK13054 lipid kinase; Reviewe 96.6 0.0044 9.6E-08 67.0 7.4 105 689-809 2-116 (300)
56 smart00194 PTPc Protein tyrosi 96.6 0.0042 9.1E-08 65.3 6.9 54 331-384 174-236 (258)
57 PLN02727 NAD kinase 96.6 0.0039 8.6E-08 76.2 7.1 173 424-610 409-614 (986)
58 PRK13059 putative lipid kinase 96.5 0.0097 2.1E-07 64.4 8.5 106 690-809 1-114 (295)
59 COG5599 PTP2 Protein tyrosine 96.4 0.0023 5E-08 68.6 3.5 41 328-368 197-239 (302)
60 PRK13055 putative lipid kinase 96.4 0.014 3E-07 64.3 9.6 104 690-809 2-118 (334)
61 PF00781 DAGK_cat: Diacylglyce 96.4 0.012 2.7E-07 55.8 7.9 83 692-790 1-93 (130)
62 PRK13337 putative lipid kinase 96.2 0.02 4.4E-07 62.0 9.5 107 690-809 1-115 (304)
63 PHA02740 protein tyrosine phos 95.9 0.015 3.3E-07 63.5 6.4 22 347-368 221-242 (298)
64 KOG2283 Clathrin coat dissocia 95.8 0.013 2.8E-07 67.3 5.7 98 280-387 44-149 (434)
65 smart00046 DAGKc Diacylglycero 95.8 0.036 7.7E-07 52.8 7.7 35 755-789 49-88 (124)
66 PHA02742 protein tyrosine phos 95.7 0.017 3.7E-07 63.1 5.8 22 347-368 229-250 (303)
67 PRK15375 pathogenicity island 95.6 0.067 1.5E-06 62.4 10.5 47 350-396 469-518 (535)
68 PRK12361 hypothetical protein; 95.6 0.036 7.9E-07 65.0 8.7 103 690-809 242-357 (547)
69 COG1597 LCB5 Sphingosine kinas 95.6 0.027 5.8E-07 61.6 7.1 109 689-809 1-116 (301)
70 PLN02958 diacylglycerol kinase 95.4 0.046 9.9E-07 63.6 8.4 111 684-810 105-236 (481)
71 PHA02747 protein tyrosine phos 95.3 0.019 4.2E-07 63.0 4.8 21 348-368 230-250 (312)
72 PLN02160 thiosulfate sulfurtra 95.2 0.088 1.9E-06 51.1 8.5 87 275-375 17-107 (136)
73 TIGR03702 lip_kinase_YegS lipi 95.1 0.066 1.4E-06 57.8 8.1 102 692-809 1-112 (293)
74 PHA02746 protein tyrosine phos 94.9 0.047 1E-06 60.3 6.2 21 348-368 248-268 (323)
75 PF00102 Y_phosphatase: Protei 94.8 0.03 6.6E-07 56.7 4.3 39 332-370 152-193 (235)
76 PHA02738 hypothetical protein; 94.7 0.037 8.1E-07 61.0 5.0 22 347-368 227-248 (320)
77 COG5350 Predicted protein tyro 94.4 0.47 1E-05 47.9 11.3 96 282-381 27-129 (172)
78 cd01523 RHOD_Lact_B Member of 94.3 0.18 4E-06 45.2 7.7 86 275-375 1-87 (100)
79 cd01518 RHOD_YceA Member of th 94.0 0.23 5E-06 44.8 7.7 85 274-375 3-87 (101)
80 KOG0793 Protein tyrosine phosp 94.0 0.57 1.2E-05 56.3 12.6 32 267-298 802-838 (1004)
81 KOG0792 Protein tyrosine phosp 93.9 0.079 1.7E-06 65.6 5.7 34 332-365 1045-1081(1144)
82 cd01533 4RHOD_Repeat_2 Member 93.5 0.32 7E-06 44.5 7.8 82 273-375 10-92 (109)
83 COG3199 Predicted inorganic po 93.5 0.11 2.3E-06 58.1 5.3 54 755-809 100-155 (355)
84 cd01448 TST_Repeat_1 Thiosulfa 93.4 0.55 1.2E-05 43.6 9.2 96 275-375 2-106 (122)
85 PLN02204 diacylglycerol kinase 92.7 0.56 1.2E-05 56.1 10.1 76 688-775 157-238 (601)
86 KOG2386 mRNA capping enzyme, g 92.6 0.13 2.9E-06 58.3 4.6 103 275-383 48-161 (393)
87 KOG0791 Protein tyrosine phosp 92.0 0.2 4.3E-06 56.3 5.0 46 325-370 261-310 (374)
88 KOG4667 Predicted esterase [Li 91.8 0.11 2.3E-06 55.2 2.5 64 108-174 178-244 (269)
89 KOG0789 Protein tyrosine phosp 91.7 0.25 5.4E-06 55.2 5.5 23 346-368 298-320 (415)
90 cd01519 RHOD_HSP67B2 Member of 91.0 0.81 1.8E-05 41.2 7.1 87 276-375 2-92 (106)
91 cd01528 RHOD_2 Member of the R 90.6 1.3 2.9E-05 39.8 8.0 81 274-375 1-84 (101)
92 cd01534 4RHOD_Repeat_3 Member 89.7 1.5 3.2E-05 39.2 7.5 80 275-375 1-82 (95)
93 PF00365 PFK: Phosphofructokin 89.6 0.96 2.1E-05 49.4 7.4 94 691-786 1-123 (282)
94 COG0607 PspE Rhodanese-related 89.4 1.2 2.6E-05 40.0 6.8 78 277-375 9-87 (110)
95 PRK01415 hypothetical protein; 89.4 2.8 6.1E-05 45.2 10.6 167 182-375 16-197 (247)
96 KOG0790 Protein tyrosine phosp 89.2 0.56 1.2E-05 53.9 5.4 32 332-363 431-467 (600)
97 COG0205 PfkA 6-phosphofructoki 89.2 1.5 3.2E-05 49.6 8.6 118 689-809 1-156 (347)
98 PF00581 Rhodanese: Rhodanese- 89.2 2.4 5.2E-05 37.8 8.5 80 276-367 1-86 (113)
99 PLN02884 6-phosphofructokinase 88.8 0.99 2.1E-05 51.9 7.1 130 675-808 38-209 (411)
100 cd01522 RHOD_1 Member of the R 88.5 2.9 6.3E-05 39.2 8.9 87 275-375 1-90 (117)
101 cd01449 TST_Repeat_2 Thiosulfa 88.5 0.88 1.9E-05 41.8 5.4 95 276-375 2-104 (118)
102 cd01444 GlpE_ST GlpE sulfurtra 88.0 2.1 4.5E-05 37.7 7.2 80 275-375 2-82 (96)
103 cd01527 RHOD_YgaP Member of th 87.7 1.2 2.6E-05 39.8 5.6 78 274-375 3-80 (99)
104 PRK05320 rhodanese superfamily 87.3 1.5 3.3E-05 47.2 7.1 174 182-375 14-201 (257)
105 PRK14071 6-phosphofructokinase 86.7 0.57 1.2E-05 52.9 3.5 53 755-809 107-169 (360)
106 PRK06186 hypothetical protein; 86.7 1.7 3.7E-05 46.4 6.9 36 753-788 51-91 (229)
107 KOG1530 Rhodanese-related sulf 86.5 1.9 4.2E-05 42.5 6.6 81 276-369 26-110 (136)
108 PRK06895 putative anthranilate 86.3 2 4.2E-05 43.8 6.9 75 691-789 2-82 (190)
109 PRK05600 thiamine biosynthesis 85.6 1.8 3.9E-05 49.0 6.8 85 274-374 272-357 (370)
110 TIGR02482 PFKA_ATP 6-phosphofr 84.7 0.85 1.8E-05 50.4 3.6 53 754-808 90-152 (301)
111 PF13348 Y_phosphatase3C: Tyro 84.4 0.48 1E-05 40.5 1.2 42 398-439 27-68 (68)
112 TIGR02483 PFK_mixed phosphofru 84.1 0.9 2E-05 50.6 3.5 52 754-808 93-154 (324)
113 KOG4228 Protein tyrosine phosp 83.8 0.5 1.1E-05 59.3 1.5 31 333-363 713-746 (1087)
114 PRK06555 pyrophosphate--fructo 83.8 1 2.3E-05 51.6 3.9 43 754-796 111-168 (403)
115 PRK07765 para-aminobenzoate sy 83.6 2.5 5.5E-05 44.1 6.4 79 692-789 2-86 (214)
116 PRK10287 thiosulfate:cyanide s 83.3 2.6 5.7E-05 39.4 5.7 68 287-375 19-86 (104)
117 CHL00101 trpG anthranilate syn 82.8 2.6 5.6E-05 43.0 6.0 75 693-789 2-82 (190)
118 PRK00162 glpE thiosulfate sulf 82.7 4.1 9E-05 37.2 6.7 79 274-375 6-84 (108)
119 cd00763 Bacterial_PFK Phosphof 82.7 1.3 2.7E-05 49.3 3.9 43 754-797 91-143 (317)
120 TIGR02981 phageshock_pspE phag 82.3 3.9 8.4E-05 38.0 6.4 69 286-375 16-84 (101)
121 TIGR00566 trpG_papA glutamine 82.2 2.9 6.3E-05 42.6 6.1 74 693-789 2-82 (188)
122 cd01520 RHOD_YbbB Member of th 81.8 6.4 0.00014 37.4 7.8 86 275-374 1-112 (128)
123 PTZ00286 6-phospho-1-fructokin 81.7 1.4 3E-05 51.5 3.9 113 683-796 80-232 (459)
124 cd01524 RHOD_Pyr_redox Member 81.7 4.6 0.0001 35.6 6.4 75 276-374 2-76 (90)
125 PRK06774 para-aminobenzoate sy 81.6 2.6 5.6E-05 42.9 5.5 74 693-789 2-82 (191)
126 PRK14072 6-phosphofructokinase 81.6 1.3 2.9E-05 50.9 3.8 43 754-796 102-159 (416)
127 cd01526 RHOD_ThiF Member of th 81.6 4.9 0.00011 37.7 6.9 86 274-374 9-97 (122)
128 cd01530 Cdc25 Cdc25 phosphatas 81.5 4.9 0.00011 38.1 6.9 25 345-370 66-91 (121)
129 KOG4471 Phosphatidylinositol 3 80.7 2.1 4.5E-05 51.0 4.9 22 345-366 372-393 (717)
130 PF06602 Myotub-related: Myotu 80.4 2.1 4.6E-05 48.2 4.7 31 339-370 224-254 (353)
131 cd01743 GATase1_Anthranilate_S 80.3 2 4.2E-05 43.3 4.0 65 708-789 12-81 (184)
132 PRK06830 diphosphate--fructose 80.3 1.6 3.5E-05 50.7 3.8 113 683-796 73-228 (443)
133 PRK07053 glutamine amidotransf 79.9 4.4 9.6E-05 43.0 6.7 81 689-789 1-93 (234)
134 PLN02564 6-phosphofructokinase 78.6 2 4.3E-05 50.5 3.9 123 683-808 80-242 (484)
135 PRK11493 sseA 3-mercaptopyruva 78.3 8 0.00017 41.8 8.2 43 331-375 215-257 (281)
136 PRK03202 6-phosphofructokinase 77.1 2.3 5E-05 47.4 3.7 104 690-796 1-143 (320)
137 PRK00142 putative rhodanese-re 77.1 6.8 0.00015 43.6 7.3 84 271-375 110-197 (314)
138 PRK05670 anthranilate synthase 76.7 3.1 6.7E-05 42.2 4.2 75 693-789 2-82 (189)
139 cd01447 Polysulfide_ST Polysul 76.5 8.8 0.00019 34.1 6.7 28 346-375 60-87 (103)
140 cd01525 RHOD_Kc Member of the 76.1 7.2 0.00016 35.0 6.0 87 275-375 1-91 (105)
141 cd08194 Fe-ADH6 Iron-containin 76.0 5.2 0.00011 45.0 6.2 88 690-787 23-130 (375)
142 PRK11784 tRNA 2-selenouridine 75.8 11 0.00023 42.6 8.6 28 346-375 87-115 (345)
143 PRK08857 para-aminobenzoate sy 75.3 6.7 0.00015 40.1 6.2 74 693-789 2-82 (193)
144 PLN02335 anthranilate synthase 75.2 6.2 0.00014 41.5 6.1 76 691-789 19-101 (222)
145 cd00363 PFK Phosphofructokinas 75.1 2.3 5E-05 47.6 3.1 33 754-786 91-128 (338)
146 TIGR03865 PQQ_CXXCW PQQ-depend 75.1 22 0.00048 35.6 9.7 98 274-375 37-143 (162)
147 cd01529 4RHOD_Repeats Member o 74.2 5.6 0.00012 35.4 4.8 29 345-375 54-82 (96)
148 cd08193 HVD 5-hydroxyvalerate 72.2 6.7 0.00015 44.1 5.9 88 690-787 26-133 (376)
149 PRK06490 glutamine amidotransf 72.1 8.9 0.00019 40.9 6.4 80 690-789 7-96 (239)
150 COG2897 SseA Rhodanese-related 70.7 15 0.00032 40.6 7.9 93 276-371 159-257 (285)
151 PRK05380 pyrG CTP synthetase; 70.7 10 0.00022 45.2 7.1 86 691-788 289-381 (533)
152 cd08176 LPO Lactadehyde:propan 70.6 7 0.00015 44.0 5.5 88 690-787 28-135 (377)
153 PRK09860 putative alcohol dehy 70.4 10 0.00022 43.1 6.7 88 690-787 31-138 (383)
154 PRK07649 para-aminobenzoate/an 70.2 7.8 0.00017 40.0 5.3 73 693-788 2-81 (195)
155 PLN02723 3-mercaptopyruvate su 69.8 11 0.00023 41.8 6.7 44 330-375 252-295 (320)
156 cd08179 NADPH_BDH NADPH-depend 69.7 6.9 0.00015 44.0 5.3 77 690-776 23-101 (375)
157 cd03132 GATase1_catalase Type 69.5 22 0.00047 34.0 7.9 100 691-795 2-116 (142)
158 PLN02251 pyrophosphate-depende 69.0 4.6 0.0001 48.4 3.8 33 754-786 189-226 (568)
159 KOG1116 Sphingosine kinase, in 68.9 17 0.00036 43.7 8.2 88 687-789 176-277 (579)
160 cd08186 Fe-ADH8 Iron-containin 68.8 8.3 0.00018 43.6 5.7 88 690-787 26-135 (383)
161 cd08187 BDH Butanol dehydrogen 68.7 8.2 0.00018 43.6 5.6 88 690-787 28-136 (382)
162 PRK05637 anthranilate synthase 68.5 16 0.00034 38.3 7.2 76 690-788 1-82 (208)
163 TIGR02477 PFKA_PPi diphosphate 68.1 5.1 0.00011 47.8 3.9 33 754-786 160-197 (539)
164 PRK07411 hypothetical protein; 67.8 10 0.00022 43.3 6.1 84 274-375 283-368 (390)
165 PRK13525 glutamine amidotransf 67.8 15 0.00032 37.7 6.7 71 691-789 2-82 (189)
166 cd08181 PPD-like 1,3-propanedi 67.6 8.7 0.00019 43.0 5.5 87 691-787 26-132 (357)
167 PRK07085 diphosphate--fructose 67.3 5.5 0.00012 47.7 4.0 32 755-786 164-200 (555)
168 TIGR01815 TrpE-clade3 anthrani 67.1 13 0.00027 46.0 7.1 79 689-789 515-598 (717)
169 TIGR01357 aroB 3-dehydroquinat 66.9 9.1 0.0002 42.5 5.4 90 690-787 20-115 (344)
170 COG1454 EutG Alcohol dehydroge 66.8 8 0.00017 44.2 5.0 78 689-776 28-106 (377)
171 PLN03028 pyrophosphate--fructo 66.8 5.6 0.00012 48.1 3.9 32 754-785 172-208 (610)
172 smart00450 RHOD Rhodanese Homo 66.5 25 0.00054 30.1 7.0 29 345-375 54-82 (100)
173 cd08551 Fe-ADH iron-containing 66.4 8.6 0.00019 43.0 5.1 89 689-787 22-130 (370)
174 PRK11574 oxidative-stress-resi 66.0 23 0.00049 35.8 7.7 99 690-793 2-113 (196)
175 KOG1089 Myotubularin-related p 66.0 9.8 0.00021 45.6 5.6 29 345-373 342-370 (573)
176 cd00765 Pyrophosphate_PFK Phos 65.3 6.1 0.00013 47.2 3.8 33 754-786 165-202 (550)
177 cd08170 GlyDH Glycerol dehydro 65.2 17 0.00036 40.5 7.1 86 690-787 22-109 (351)
178 cd01746 GATase1_CTP_Synthase T 65.2 21 0.00046 38.1 7.5 37 753-789 53-94 (235)
179 TIGR00337 PyrG CTP synthase. C 65.2 16 0.00034 43.6 7.1 85 690-789 289-382 (525)
180 PRK13566 anthranilate synthase 65.0 16 0.00035 45.1 7.5 79 689-789 525-608 (720)
181 COG0504 PyrG CTP synthase (UTP 64.8 14 0.0003 43.6 6.5 33 756-788 344-381 (533)
182 PRK08762 molybdopterin biosynt 64.7 18 0.00039 40.8 7.3 79 275-375 5-83 (376)
183 cd08175 G1PDH Glycerol-1-phosp 64.6 13 0.00027 41.5 6.0 89 690-787 23-112 (348)
184 TIGR02478 6PF1K_euk 6-phosphof 64.6 6.1 0.00013 48.8 3.8 117 688-808 387-545 (745)
185 PRK10624 L-1,2-propanediol oxi 64.4 16 0.00034 41.4 6.8 88 690-787 30-139 (382)
186 cd08185 Fe-ADH1 Iron-containin 63.8 11 0.00024 42.5 5.4 76 691-775 26-102 (380)
187 cd08171 GlyDH-like2 Glycerol d 63.7 13 0.00029 41.4 5.9 97 691-797 23-122 (345)
188 cd08178 AAD_C C-terminal alcoh 63.5 9.3 0.0002 43.4 4.7 76 690-775 21-97 (398)
189 PF13685 Fe-ADH_2: Iron-contai 63.4 22 0.00048 38.5 7.3 87 689-787 18-107 (250)
190 PLN02834 3-dehydroquinate synt 63.2 12 0.00025 43.6 5.5 96 690-788 100-198 (433)
191 PF04179 Init_tRNA_PT: Initiat 63.2 23 0.00051 41.5 8.0 76 286-370 317-400 (451)
192 cd00764 Eukaryotic_PFK Phospho 63.1 6.9 0.00015 48.5 3.9 117 688-808 387-545 (762)
193 cd01521 RHOD_PspE2 Member of t 63.1 19 0.00041 33.1 5.9 82 272-375 7-92 (110)
194 PRK01269 tRNA s(4)U8 sulfurtra 63.1 11 0.00024 44.2 5.3 67 289-374 408-474 (482)
195 KOG4435 Predicted lipid kinase 63.1 9.6 0.00021 43.9 4.6 88 688-789 58-153 (535)
196 cd08192 Fe-ADH7 Iron-containin 63.0 8.9 0.00019 43.0 4.4 76 690-775 24-100 (370)
197 PRK07567 glutamine amidotransf 62.9 11 0.00023 40.3 4.8 36 754-789 50-103 (242)
198 PRK07878 molybdopterin biosynt 62.6 21 0.00045 40.8 7.3 81 274-375 288-369 (392)
199 PTZ00468 phosphofructokinase f 62.6 6.6 0.00014 50.9 3.6 33 754-786 799-841 (1328)
200 PRK00002 aroB 3-dehydroquinate 62.5 12 0.00026 42.0 5.3 91 690-787 31-126 (358)
201 cd01443 Cdc25_Acr2p Cdc25 enzy 62.3 32 0.00069 31.8 7.3 75 275-365 4-84 (113)
202 PRK06203 aroB 3-dehydroquinate 62.0 16 0.00036 41.7 6.4 96 690-787 42-145 (389)
203 PRK11366 puuD gamma-glutamyl-g 61.9 17 0.00037 39.1 6.2 83 692-789 9-117 (254)
204 TIGR02638 lactal_redase lactal 61.6 14 0.00031 41.7 5.8 75 690-774 29-104 (379)
205 PRK11493 sseA 3-mercaptopyruva 61.5 33 0.00072 37.1 8.3 97 275-375 7-114 (281)
206 PRK09629 bifunctional thiosulf 61.3 29 0.00063 42.1 8.6 96 275-375 149-249 (610)
207 cd08549 G1PDH_related Glycerol 61.2 15 0.00032 40.8 5.7 85 691-787 25-112 (332)
208 KOG1115 Ceramide kinase [Lipid 61.0 7.6 0.00017 44.7 3.4 88 671-768 129-230 (516)
209 CHL00188 hisH imidazole glycer 60.9 28 0.0006 36.5 7.4 36 754-790 38-85 (210)
210 cd08183 Fe-ADH2 Iron-containin 60.3 27 0.00058 39.4 7.6 72 690-775 22-94 (374)
211 TIGR03800 PLP_synth_Pdx2 pyrid 60.1 20 0.00044 36.7 6.0 70 692-789 1-80 (184)
212 PRK08250 glutamine amidotransf 59.8 27 0.00059 37.1 7.1 77 692-788 2-93 (235)
213 PRK15454 ethanol dehydrogenase 59.2 15 0.00033 41.9 5.5 89 690-787 49-156 (395)
214 PF00465 Fe-ADH: Iron-containi 59.1 16 0.00036 40.7 5.7 88 691-787 22-129 (366)
215 PRK09065 glutamine amidotransf 59.1 37 0.00079 36.1 8.0 36 754-789 53-98 (237)
216 PF04343 DUF488: Protein of un 58.8 15 0.00032 34.9 4.6 46 280-325 6-53 (122)
217 cd01531 Acr2p Eukaryotic arsen 58.7 34 0.00074 31.5 6.8 78 275-368 4-83 (113)
218 cd08169 DHQ-like Dehydroquinat 58.5 22 0.00048 39.9 6.5 92 690-787 23-117 (344)
219 cd01744 GATase1_CPSase Small c 58.5 16 0.00036 36.7 5.0 62 709-789 11-79 (178)
220 PRK09423 gldA glycerol dehydro 58.2 19 0.00042 40.4 6.0 85 691-787 30-116 (366)
221 cd08195 DHQS Dehydroquinate sy 58.1 15 0.00032 41.0 5.1 92 689-787 23-119 (345)
222 cd08177 MAR Maleylacetate redu 58.1 12 0.00026 41.5 4.4 85 690-787 23-109 (337)
223 PRK13527 glutamine amidotransf 58.0 25 0.00054 36.1 6.3 36 754-789 42-87 (200)
224 KOG2387 CTP synthase (UTP-ammo 58.0 21 0.00045 41.8 6.2 37 753-789 361-402 (585)
225 TIGR01382 PfpI intracellular p 57.7 34 0.00073 33.4 7.0 100 692-796 1-114 (166)
226 cd07766 DHQ_Fe-ADH Dehydroquin 57.7 15 0.00032 40.3 5.0 86 690-787 23-112 (332)
227 cd08189 Fe-ADH5 Iron-containin 57.2 22 0.00047 40.1 6.2 76 690-775 26-102 (374)
228 PF00117 GATase: Glutamine ami 56.2 11 0.00025 37.6 3.5 37 753-789 40-82 (192)
229 cd08191 HHD 6-hydroxyhexanoate 55.7 35 0.00075 38.7 7.6 88 691-787 23-129 (386)
230 TIGR02478 6PF1K_euk 6-phosphof 55.3 10 0.00022 47.0 3.5 43 754-796 93-167 (745)
231 cd08182 HEPD Hydroxyethylphosp 54.0 21 0.00045 40.1 5.4 74 690-776 23-97 (367)
232 cd01532 4RHOD_Repeat_1 Member 53.2 38 0.00083 30.1 6.0 15 346-361 49-63 (92)
233 TIGR01426 MGT glycosyltransfer 52.6 49 0.0011 36.8 8.0 97 706-809 242-357 (392)
234 PRK12564 carbamoyl phosphate s 51.9 15 0.00033 41.7 3.9 75 690-789 177-258 (360)
235 PRK13181 hisH imidazole glycer 51.9 28 0.00061 35.6 5.6 35 754-789 36-82 (199)
236 PTZ00468 phosphofructokinase f 51.7 14 0.0003 48.2 3.8 33 754-786 195-232 (1328)
237 PRK01175 phosphoribosylformylg 50.6 38 0.00082 36.9 6.5 83 691-793 4-108 (261)
238 PF05925 IpgD: Enterobacterial 50.2 5.3 0.00012 47.2 0.0 24 345-368 451-474 (559)
239 PF08357 SEFIR: SEFIR domain; 50.1 19 0.00042 34.7 3.9 35 691-726 1-37 (150)
240 cd01745 GATase1_2 Subgroup of 50.0 25 0.00055 35.8 4.9 68 706-789 20-110 (189)
241 PF02126 PTE: Phosphotriestera 50.0 32 0.00069 38.4 6.0 42 278-321 42-83 (308)
242 PRK10586 putative oxidoreducta 50.0 44 0.00095 37.9 7.2 82 691-787 35-118 (362)
243 PLN02327 CTP synthase 49.9 38 0.00083 40.8 6.9 35 753-788 360-400 (557)
244 PRK10310 PTS system galactitol 49.8 1.1E+02 0.0023 28.2 8.4 89 691-809 3-92 (94)
245 cd00764 Eukaryotic_PFK Phospho 49.3 15 0.00033 45.6 3.6 37 689-726 2-40 (762)
246 PRK12838 carbamoyl phosphate s 49.2 31 0.00067 39.3 5.8 73 690-788 167-246 (354)
247 PTZ00287 6-phosphofructokinase 48.9 15 0.00032 48.3 3.5 32 755-786 928-964 (1419)
248 PRK09393 ftrA transcriptional 48.8 44 0.00095 36.5 6.8 47 753-799 73-131 (322)
249 TIGR03167 tRNA_sel_U_synt tRNA 48.7 40 0.00088 37.6 6.5 24 349-374 76-100 (311)
250 cd08173 Gro1PDH Sn-glycerol-1- 48.6 33 0.00071 38.1 5.9 82 691-787 26-110 (339)
251 cd08172 GlyDH-like1 Glycerol d 48.4 27 0.00059 38.9 5.2 84 690-787 23-108 (347)
252 PF13380 CoA_binding_2: CoA bi 47.9 40 0.00086 32.0 5.5 88 691-788 1-88 (116)
253 cd03174 DRE_TIM_metallolyase D 47.2 1.1E+02 0.0025 32.0 9.3 80 278-358 119-201 (265)
254 TIGR01368 CPSaseIIsmall carbam 46.8 20 0.00043 40.8 3.8 73 691-789 174-253 (358)
255 cd03169 GATase1_PfpI_1 Type 1 46.5 83 0.0018 31.4 7.8 42 754-795 75-129 (180)
256 PRK09875 putative hydrolase; P 46.1 1E+02 0.0023 34.1 9.1 43 276-320 36-78 (292)
257 cd08550 GlyDH-like Glycerol_de 45.9 44 0.00096 37.3 6.3 83 691-787 23-109 (349)
258 cd03785 GT1_MurG MurG is an N- 45.8 84 0.0018 33.8 8.3 57 749-809 246-322 (350)
259 cd08188 Fe-ADH4 Iron-containin 45.8 33 0.00071 38.8 5.4 76 690-775 28-104 (377)
260 PRK15378 inositol phosphate ph 45.6 13 0.00029 43.7 2.2 18 351-368 460-477 (564)
261 COG1819 Glycosyl transferases, 45.6 86 0.0019 36.0 8.7 99 683-788 229-329 (406)
262 cd08190 HOT Hydroxyacid-oxoaci 44.5 27 0.00059 40.0 4.6 76 690-775 23-99 (414)
263 TIGR01737 FGAM_synth_I phospho 44.5 64 0.0014 34.0 7.0 72 692-789 2-88 (227)
264 cd01537 PBP1_Repressors_Sugar_ 44.5 58 0.0013 32.5 6.4 88 692-790 1-90 (264)
265 cd08180 PDD 1,3-propanediol de 44.0 42 0.00091 37.2 5.8 87 690-787 22-117 (332)
266 cd01742 GATase1_GMP_Synthase T 43.9 29 0.00062 34.6 4.1 37 753-789 39-80 (181)
267 cd00158 RHOD Rhodanese Homolog 43.8 47 0.001 28.1 4.9 27 345-373 48-74 (89)
268 KOG4228 Protein tyrosine phosp 43.8 11 0.00024 48.0 1.3 94 112-208 679-798 (1087)
269 CHL00197 carA carbamoyl-phosph 43.2 53 0.0012 37.8 6.5 75 690-789 192-273 (382)
270 cd08197 DOIS 2-deoxy-scyllo-in 42.6 31 0.00068 39.0 4.6 87 690-787 23-118 (355)
271 cd08199 EEVS 2-epi-5-epi-valio 42.4 53 0.0012 37.1 6.3 92 689-787 25-122 (354)
272 TIGR03405 Phn_Fe-ADH phosphona 42.2 29 0.00063 38.9 4.3 76 691-775 24-99 (355)
273 COG4069 Uncharacterized protei 42.1 24 0.00052 39.4 3.4 37 751-788 262-298 (367)
274 PRK08007 para-aminobenzoate sy 41.9 40 0.00087 34.4 4.9 74 693-789 2-82 (187)
275 TIGR00888 guaA_Nterm GMP synth 41.7 33 0.00071 34.7 4.2 34 756-789 42-80 (188)
276 cd03784 GT1_Gtf_like This fami 41.0 88 0.0019 34.7 7.7 59 748-810 297-371 (401)
277 PRK13143 hisH imidazole glycer 40.6 98 0.0021 31.9 7.5 71 692-789 2-81 (200)
278 PRK13805 bifunctional acetalde 40.2 42 0.0009 42.3 5.6 77 689-775 479-558 (862)
279 COG0693 ThiJ Putative intracel 40.2 1.1E+02 0.0023 30.8 7.5 99 690-792 2-112 (188)
280 cd06267 PBP1_LacI_sugar_bindin 39.3 87 0.0019 31.3 6.8 96 693-800 2-100 (264)
281 cd08198 DHQS-like2 Dehydroquin 39.2 59 0.0013 37.2 6.1 95 689-787 29-133 (369)
282 PF04392 ABC_sub_bind: ABC tra 39.0 1.3E+02 0.0028 32.5 8.4 96 689-799 130-233 (294)
283 cd03134 GATase1_PfpI_like A ty 38.1 1.1E+02 0.0024 29.7 7.2 102 692-797 1-117 (165)
284 PF13528 Glyco_trans_1_3: Glyc 37.9 82 0.0018 33.6 6.7 57 748-808 243-317 (318)
285 cd07943 DRE_TIM_HOA 4-hydroxy- 37.7 2.1E+02 0.0046 30.7 9.7 81 277-358 115-196 (263)
286 PRK13146 hisH imidazole glycer 37.5 1E+02 0.0022 32.1 7.2 36 754-789 40-87 (209)
287 PRK11249 katE hydroperoxidase 37.3 1.3E+02 0.0027 37.8 8.8 100 684-788 591-700 (752)
288 cd01741 GATase1_1 Subgroup of 37.2 79 0.0017 31.7 6.1 37 753-789 44-91 (188)
289 cd05566 PTS_IIB_galactitol PTS 36.8 2.3E+02 0.005 25.0 8.3 87 691-808 1-88 (89)
290 TIGR01133 murG undecaprenyldip 35.1 1.6E+02 0.0035 31.5 8.5 58 748-809 243-319 (348)
291 cd00861 ProRS_anticodon_short 34.9 81 0.0018 27.7 5.1 61 690-764 1-63 (94)
292 PRK00843 egsA NAD(P)-dependent 34.8 1.3E+02 0.0029 33.7 7.9 81 691-787 35-119 (350)
293 PRK09629 bifunctional thiosulf 33.5 1.6E+02 0.0035 36.0 8.8 89 275-375 11-108 (610)
294 COG0512 PabA Anthranilate/para 33.4 2.2E+02 0.0048 30.1 8.6 75 690-789 1-84 (191)
295 COG2012 RPB5 DNA-directed RNA 33.4 9.7 0.00021 34.6 -1.0 18 77-94 36-63 (80)
296 cd07939 DRE_TIM_NifV Streptomy 33.1 3.1E+02 0.0068 29.3 10.1 78 280-358 116-193 (259)
297 PLN02832 glutamine amidotransf 33.1 1.3E+02 0.0028 32.8 7.2 71 691-789 2-82 (248)
298 cd07944 DRE_TIM_HOA_like 4-hyd 31.5 2.9E+02 0.0063 30.0 9.6 79 279-358 114-194 (266)
299 PF06283 ThuA: Trehalose utili 31.4 1.5E+02 0.0033 30.5 7.2 85 692-793 1-96 (217)
300 cd06309 PBP1_YtfQ_like Peripla 31.3 72 0.0016 33.0 4.8 86 692-788 1-89 (273)
301 cd01747 GATase1_Glutamyl_Hydro 31.1 1E+02 0.0023 33.6 6.2 69 705-789 20-102 (273)
302 TIGR03217 4OH_2_O_val_ald 4-hy 30.9 3.2E+02 0.0068 30.9 10.0 82 276-358 116-199 (333)
303 cd01535 4RHOD_Repeat_4 Member 30.7 2.1E+02 0.0045 28.2 7.7 23 346-369 48-70 (145)
304 PRK11780 isoprenoid biosynthes 30.3 1.6E+02 0.0035 31.1 7.3 39 753-791 83-140 (217)
305 cd06325 PBP1_ABC_uncharacteriz 29.0 2E+02 0.0043 29.6 7.6 83 689-786 130-218 (281)
306 cd01748 GATase1_IGP_Synthase T 28.8 78 0.0017 32.3 4.5 35 755-789 36-81 (198)
307 TIGR01823 PabB-fungal aminodeo 28.7 1.4E+02 0.003 37.3 7.4 36 754-789 52-96 (742)
308 cd03129 GAT1_Peptidase_E_like 28.7 1.1E+02 0.0025 31.4 5.7 87 689-789 28-124 (210)
309 cd08184 Fe-ADH3 Iron-containin 27.8 99 0.0022 34.9 5.5 32 755-787 81-131 (347)
310 PF04101 Glyco_tran_28_C: Glyc 27.5 38 0.00083 33.0 1.9 33 749-785 66-98 (167)
311 PRK05597 molybdopterin biosynt 27.3 81 0.0018 35.6 4.7 28 346-375 313-340 (355)
312 cd03128 GAT_1 Type 1 glutamine 27.1 70 0.0015 25.5 3.2 38 753-790 44-90 (92)
313 PRK00758 GMP synthase subunit 26.8 69 0.0015 32.3 3.6 32 757-789 43-77 (184)
314 COG0518 GuaA GMP synthase - Gl 26.7 2.8E+02 0.0062 29.0 8.2 35 755-789 45-89 (198)
315 PRK11858 aksA trans-homoaconit 26.5 4.6E+02 0.0099 30.0 10.5 78 280-358 122-199 (378)
316 PRK08195 4-hyroxy-2-oxovalerat 25.9 4.2E+02 0.009 30.0 9.9 82 276-358 117-200 (337)
317 cd06320 PBP1_allose_binding Pe 25.7 1.8E+02 0.0039 30.0 6.6 85 692-788 1-91 (275)
318 PTZ00287 6-phosphofructokinase 25.4 64 0.0014 42.7 3.8 33 754-786 270-307 (1419)
319 cd03817 GT1_UGDG_like This fam 24.6 2.8E+02 0.0061 28.8 7.8 54 752-809 275-341 (374)
320 cd06310 PBP1_ABC_sugar_binding 24.4 2.2E+02 0.0048 29.2 7.0 83 692-788 1-91 (273)
321 cd06305 PBP1_methylthioribose_ 24.3 1.3E+02 0.0029 30.7 5.3 86 692-788 1-89 (273)
322 PRK09389 (R)-citramalate synth 24.3 4.5E+02 0.0098 31.3 10.2 94 280-375 120-213 (488)
323 PRK14607 bifunctional glutamin 24.0 1.1E+02 0.0024 36.6 5.1 34 755-789 44-83 (534)
324 cd03146 GAT1_Peptidase_E Type 23.9 3E+02 0.0066 28.6 7.8 84 688-790 29-125 (212)
325 PRK10422 lipopolysaccharide co 23.7 4E+02 0.0087 29.5 9.2 99 686-788 1-118 (352)
326 TIGR01093 aroD 3-dehydroquinat 23.6 62 0.0013 34.0 2.7 31 766-796 165-196 (228)
327 TIGR02660 nifV_homocitr homoci 23.4 5.4E+02 0.012 29.2 10.2 78 280-358 119-196 (365)
328 TIGR02090 LEU1_arch isopropylm 23.1 6E+02 0.013 28.9 10.6 80 278-358 116-195 (363)
329 PF02350 Epimerase_2: UDP-N-ac 23.1 96 0.0021 34.8 4.3 59 754-812 66-126 (346)
330 cd07940 DRE_TIM_IPMS 2-isoprop 23.1 5.3E+02 0.012 27.7 9.7 78 280-358 120-200 (268)
331 PRK10653 D-ribose transporter 23.0 2E+02 0.0044 30.3 6.5 87 689-787 25-115 (295)
332 cd06321 PBP1_ABC_sugar_binding 22.6 3.9E+02 0.0084 27.4 8.3 49 753-801 55-104 (271)
333 PRK03619 phosphoribosylformylg 22.5 2.3E+02 0.005 29.8 6.7 72 692-789 2-89 (219)
334 PRK10014 DNA-binding transcrip 22.4 4.6E+02 0.01 28.1 9.2 110 662-787 36-152 (342)
335 cd03376 TPP_PFOR_porB_like Thi 22.1 86 0.0019 33.4 3.4 35 757-791 81-121 (235)
336 TIGR00661 MJ1255 conserved hyp 22.1 2.4E+02 0.0053 30.7 7.0 35 749-787 241-275 (321)
337 cd01740 GATase1_FGAR_AT Type 1 22.1 74 0.0016 33.8 3.0 36 754-789 42-92 (238)
338 cd05013 SIS_RpiR RpiR-like pro 22.0 5.3E+02 0.011 23.5 8.3 80 690-787 13-95 (139)
339 PRK13141 hisH imidazole glycer 21.9 1.6E+02 0.0034 30.3 5.3 36 754-789 36-82 (205)
340 PRK14042 pyruvate carboxylase 21.9 1.2E+03 0.027 28.6 13.4 91 267-358 110-208 (596)
341 cd06282 PBP1_GntR_like_2 Ligan 21.6 1.8E+02 0.0038 29.6 5.5 84 693-788 2-88 (266)
342 TIGR01383 not_thiJ DJ-1 family 21.6 3.3E+02 0.0071 26.7 7.3 42 754-795 62-117 (179)
343 PLN02617 imidazole glycerol ph 21.5 2.3E+02 0.0049 34.3 7.0 74 688-789 4-89 (538)
344 TIGR02069 cyanophycinase cyano 21.4 2.4E+02 0.0052 30.5 6.7 89 690-790 28-127 (250)
345 PRK10423 transcriptional repre 21.4 5.1E+02 0.011 27.5 9.2 109 662-787 28-144 (327)
346 cd06319 PBP1_ABC_sugar_binding 21.2 1.9E+02 0.0042 29.6 5.8 98 693-801 2-104 (277)
347 PLN02723 3-mercaptopyruvate su 21.1 6E+02 0.013 28.3 9.9 45 330-375 86-130 (320)
348 cd06289 PBP1_MalI_like Ligand- 21.1 2.3E+02 0.005 28.8 6.2 84 693-787 2-87 (268)
349 PRK11303 DNA-binding transcrip 21.0 4.4E+02 0.0096 28.1 8.6 132 637-787 13-149 (328)
350 PF00682 HMGL-like: HMGL-like 21.0 4.5E+02 0.0098 27.3 8.5 76 280-356 114-190 (237)
351 cd01445 TST_Repeats Thiosulfat 20.9 2.3E+02 0.0049 27.7 5.8 43 331-375 79-124 (138)
352 cd06300 PBP1_ABC_sugar_binding 20.9 1.7E+02 0.0036 30.1 5.2 36 753-788 58-94 (272)
353 PF02775 TPP_enzyme_C: Thiamin 20.8 64 0.0014 31.3 2.0 29 757-785 47-78 (153)
354 cd06318 PBP1_ABC_sugar_binding 20.4 1.9E+02 0.0041 29.9 5.5 98 692-801 1-105 (282)
355 PLN02347 GMP synthetase 20.3 1.5E+02 0.0032 35.8 5.2 77 690-789 10-96 (536)
356 cd02010 TPP_ALS Thiamine pyrop 20.2 74 0.0016 32.1 2.4 37 757-793 67-108 (177)
357 cd06315 PBP1_ABC_sugar_binding 20.1 3.8E+02 0.0082 28.1 7.7 83 691-787 1-89 (280)
358 cd00502 DHQase_I Type I 3-dehy 20.0 84 0.0018 32.9 2.8 29 767-795 161-190 (225)
No 1
>PLN02727 NAD kinase
Probab=100.00 E-value=1.5e-199 Score=1713.42 Aligned_cols=781 Identities=67% Similarity=1.014 Sum_probs=729.9
Q ss_pred cccCCCCccccccc---cccccCCcceEeeeeeEeeccchhhhhccceEEEEeeeccccccccCcccccccCCCCCCCCc
Q 003509 7 MQRLSSPATGILCS---SKLHNNETKLWGFGFRFKLQRRNESVRRRVKLVVSAELSKSFSLNLGLDSQVIQSNDPSQLPW 83 (814)
Q Consensus 7 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (814)
|.|+ +|+|||++. ++++++++||+||||||. +|+...||++||||+|+||++||++||||||+||+||+|||||
T Consensus 1 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (986)
T PLN02727 1 MARL-SPVTGILSSCLCSVKLNSDGKLLGFGFGFW--QRKEPLKRRLKFVVSAELSKSFSSNLGLDSQNFQSRDLSQLPW 77 (986)
T ss_pred CCCC-CCccccccccccceeeccccceeccchhhh--hccHHHHhhhhheehhhhhhccccccCcccccccccchhcCcc
Confidence 6788 999999744 999999999999999984 3444449999999999999999999999999999999999999
Q ss_pred cCCCCCchHHHHhhhhhHHHHHHHHHHHHHhhcCCCCCcccccccCCCCcccCcccccccchhhHHHhhccCcccccCCC
Q 003509 84 IGPVPGDIAEVEAYCRIFRAAERLHAALMDTLCNPLTGECTVSYEFTPEEKPLLEDKIVSVLGCMLSLLNKGREDVLSGR 163 (814)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~e~~~~~d~~~~~~~~led~i~~~~~~~~~~ln~gr~~~~~~~ 163 (814)
|||||||||||||||||||+|||||+|||++||||+||||.|+|||+.+++|.|||||+++||||+++||+||.||++||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r 157 (986)
T PLN02727 78 IGPVPGDIAEVEAYCRIFRAAERLHAALMDTLCNPLTGECPVSYDFTSEEKPLLEDKIVSVLGCMLSLLNKGREEVLSGR 157 (986)
T ss_pred ccCCCccHHHHhhhhhHHHHHHHHHHHHHHHhcCcccccccccccCCccccchhhhhHHHHHHHHHHHHhcchhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccccCCCcccchhhHhhhhhHHHHHHHhccCccCccchhHHHHHHHhhhhcccCCCCCCCCCCCCc
Q 003509 164 SSIMNAYRVADISMTEDQLPPLAIFRSEMKRCCESMHIALENYLTPEDVRSLDVWRKLQRLKNVCYDSGFPRGDDYPIHT 243 (814)
Q Consensus 164 ~~~~~nf~~~~~~~~~~~~p~l~l~r~~l~~~~~~l~~~l~~yl~p~~~~~~~~~rkLqr~~~~~~d~g~pR~~g~p~~t 243 (814)
+++|++|+++|++.|||++||||+||.+||+|||+||++|++||+|+++|||+||||||||+|+|||.||||.+||||++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~ce~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~pr~~~~p~~~ 237 (986)
T PLN02727 158 SSIMSSFRGSEVSAMEDKLPPLAIFRGEMKRCCESLHVALENYLTPDDDRSLDVWRKLQRLKNVCYDAGFPRSDDYPCHT 237 (986)
T ss_pred hhhhhhcccchhhhhhccCChHHHHHHHHHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHhhhhhcCCCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccceeecCCccccccCCCcceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEee
Q 003509 244 LFANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIP 323 (814)
Q Consensus 244 ~i~Nfr~V~~~~~~d~~~~~~~e~~LYRSGqpT~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIP 323 (814)
.|+||.+|+++++++|+.+++.+..+|||+||+++++++|++.|||||||||++.++..++...++++++..|++|+|+|
T Consensus 238 ~~~n~~~v~~~~~~~~~~~~~~~~~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIP 317 (986)
T PLN02727 238 LFANWNPVYLSTSKEDIDSKESEAAFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIP 317 (986)
T ss_pred cccccceeeecccccccccccceeeEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEee
Confidence 99999999999999999999999999999999999999999999999999999973345555567888999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHHHHhC-CCCHHHHHHHHhhhccccccchHHHHHHhh
Q 003509 324 VEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYM-ARCASQISGQTITSNDVLLKDSTRTRKLKA 402 (814)
Q Consensus 324 V~d~~~ps~e~v~~fleiL~d~~~~PVLVHCtAGKDRTGal~aLLl~l~-GV~~edIiaDYlLSn~~l~~~~~~~~a~~m 402 (814)
|.....|+.+++++|++++.+..++|||+||++|+||||+|+++|+.++ +.....+.. + ..
T Consensus 318 Vs~~~apt~EqVe~fa~~l~~slpkPVLvHCKSGarRAGamvA~yl~~~~~~~~~~~~~-----~-------------~~ 379 (986)
T PLN02727 318 VEVRTAPSAEQVEKFASLVSDSSKKPIYLHSKEGVWRTSAMVSRWKQYMTRSAERLLGQ-----N-------------SV 379 (986)
T ss_pred cCCCCCCCHHHHHHHHHHHHhhcCCCEEEECCCCCchHHHHHHHHHHHHcccchhhhcc-----c-------------cc
Confidence 9888899999999999999667799999999999999999999999864 333222211 1 11
Q ss_pred hhhhhhhhhccccHHHHHHHhhcccccccccccccccccCCCCCcccc-ccccccccchhhhhcccCCcccccccccCCc
Q 003509 403 SAGKFLLEEKYETVKENQDEIQTKNGVFGFGLSVDMDKRNQSNGAYKG-LSSVEGVESAKEVDTAVGSLGTTFSKETDPF 481 (814)
Q Consensus 403 ~~~l~~l~~~~g~~ee~l~~l~~~~d~~le~ar~nl~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (814)
+.....+.++++.+++.++...+.+..+.+.+.+..+.++++++++|| +.++|+|...+++. +++++++||++|+|||
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 458 (986)
T PLN02727 380 VNGNGKLDQETGSLQETNDKDSSSNGSESGESCSIKDETGRSNLEAYNSLPSDQSTQQGEMVG-TGVESQSNFNMESDPL 458 (986)
T ss_pred cccCcccccccCccccccccccccCcccccccccccccccccccccccccccccccccccccc-ccccccceeeeecCcc
Confidence 222345668899999999999999999999999999999999999999 99999999999998 8889999999999999
Q ss_pred cccCCCCcccchhHhhhhhhcccCCCCccccccccccccCC----------ccccCCCCccccccccccccccCCCCCCC
Q 003509 482 KAQVPPSNFVSKKEMSRFFRSKTTSPPRYFNYQSKRMDVLP----------SEIVSSGPVSGVAETRYSQWSLSGNNLSP 551 (814)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (814)
|||+||||||||||||||||||||+|++|+|||+|+|++|| ++|++.+++.|++|+++||++++++++++
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~sng~~s~kn~s~ 538 (986)
T PLN02727 459 KAQVPPCDVFSKKEMSKFFRSKKIYPPTYLNYRRKGFEKLPVPQFTGVTQGSKIDDTDSISRLVETGRSNGLVSEKNSSP 538 (986)
T ss_pred cccCCCcccccHHHHHHHHhhcccCCcccccchhcccccCCccccccccchhhccCccchhhhhhccCCCccccccccCc
Confidence 99999999999999999999999999999999999999998 77999999999999999999999999999
Q ss_pred CCCCCCCCCCcccCCCCccccCCcccccccCCCcccccccccccccccccccccccccccccccCCCCCCCCCCCCc-cc
Q 003509 552 NHQNLPAGSEKSSDNNGYVSAGCSTNGFDRGDRSSMTEANLLTSVTKNLDEQVISSSVRDVQRSNGKPSNSGDDDLG-PI 630 (814)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 630 (814)
+.|++.+.+.|.+||+.++|+|++++.++.+++.++++.+.+++|+++++.++++++.++++.+||+++++++||++ +|
T Consensus 539 d~qss~~~~~k~sNGss~~s~~s~s~~Ss~~~~~~~~ng~~stsv~~nl~~~v~s~s~res~s~Ng~a~vgssd~~~~~~ 618 (986)
T PLN02727 539 KYQSSEFDNGKSSNGSSFASDGSLSVASSITNGNPSNNGASSSTVSDNLERSVASVSVRESQRSNGKASLGSSDDELGAI 618 (986)
T ss_pred cccchhhccccCCCCccccccCcccccccccCCccccCCCccccccCCCcccccccccccccccCCccccccccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cCCcccccccceeecccccccceeeeecCcccceeeecCCcccccCCchhHHhhcccccCCEEEEEecCCchHHHHHHHH
Q 003509 631 VGNMCASSTGVVRVQSRKKAEMFLVRTDGFSCNREKVTESSLAFTHPSTQQQMLMWKTTPRTVLVLKKPGPALMEEAKEV 710 (814)
Q Consensus 631 ~g~~c~s~~~~~~~~~~~~~~~~l~r~d~~sc~r~~~~~s~~~~~~ps~~~~~l~w~~~~kkVlIV~K~~~ea~~~a~eL 710 (814)
|||||||+|||||||+|||++||++||||+||+||.+++|+++|+|||+||++|+|.++|++|+||+|+++++.+.+.+|
T Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~c~~~~~~~~~~~~~~~s~~~~~l~W~~p~rtVgIV~K~~~ea~~~~~eL 698 (986)
T PLN02727 619 EGNMCASATGVVRVQSRRKAEMFLVRTDGFSCTREKVTESSLAFTHPSTQQQMLMWKSTPKTVLLLKKLGQELMEEAKEV 698 (986)
T ss_pred cccccccccccEEeeccCCcceEEEEecCcceeehhhccccccccCcchhceeeecCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred HHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHHHHHhhhcCCCCcEEEEeCCCc
Q 003509 711 ASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSL 790 (814)
Q Consensus 711 i~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTILrAArlf~~s~~PILGINlGrL 790 (814)
++||.+++|++|+++++.++.+...+.+....+++..+..++.+.+|+|||||||||||+|+|++....+||||||+|+|
T Consensus 699 ~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVIvLGGDGTlLrAar~~~~~~iPILGINlGrL 778 (986)
T PLN02727 699 ASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVVSFNLGSL 778 (986)
T ss_pred HHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcccCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEeCCCc
Confidence 99999844999999999887664333333333444444456667899999999999999999999999999999999999
Q ss_pred ccCCCCCcccHHHHHhhhh
Q 003509 791 GFLTSHPVSSYLNSLCFLS 809 (814)
Q Consensus 791 GFLTe~~~dei~eaLe~L~ 809 (814)
||||++++++++++|++|+
T Consensus 779 GFLTdi~~ee~~~~L~~Il 797 (986)
T PLN02727 779 GFLTSHYFEDFRQDLRQVI 797 (986)
T ss_pred cccccCCHHHHHHHHHHHH
Confidence 9999999999999999986
No 2
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=99.92 E-value=5.1e-25 Score=215.81 Aligned_cols=132 Identities=23% Similarity=0.286 Sum_probs=86.6
Q ss_pred CccceeecCCccccccCCCcceEEEcCC---CCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEee
Q 003509 247 NWSPVYLSNSKDDIASKDSEVTFCRGGQ---VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIP 323 (814)
Q Consensus 247 Nfr~V~~~~~~d~~~~~~~e~~LYRSGq---pT~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIP 323 (814)
|||++++.++.+ +...+.+.|||||. +|++|++.|.++||+||||||++. |....| .....|++++|+|
T Consensus 1 N~RDlGg~~~~~--g~~ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~-E~~~~p-----~~~~~g~~~~~~p 72 (164)
T PF13350_consen 1 NFRDLGGYPTAD--GRRIRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPT-ERERAP-----DPLIDGVQYVHIP 72 (164)
T ss_dssp S-EEGGGTST------TS-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HH-HHHHHS---------TT-EEEE--
T ss_pred CccccCCCCccc--eeeecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCcc-ccccCC-----CCCcCCceeeeec
Confidence 788887666554 45677789999996 589999999999999999999997 332222 2345699999999
Q ss_pred cCCCCCCC-----------------------------HHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHHHHhCCC
Q 003509 324 VEVRTAPT-----------------------------MEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMAR 374 (814)
Q Consensus 324 V~d~~~ps-----------------------------~e~v~~fleiL~d~~~~PVLVHCtAGKDRTGal~aLLl~l~GV 374 (814)
+....... .+.+.++++++.+.. +|+||||++||||||++++|++.++||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~-~p~l~HC~aGKDRTG~~~alll~~lGV 151 (164)
T PF13350_consen 73 IFGDDASSPDKLAELLQSSADAPRGMLEFYREMLESYAEAYRKIFELLADAP-GPVLFHCTAGKDRTGVVAALLLSLLGV 151 (164)
T ss_dssp SS-S-TTH----------HHHHHHHHHHHHHHGGGSTHHHHHHHHHHHH-TT---EEEE-SSSSSHHHHHHHHHHHHTT-
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHHHhhhHHHHHHHHHhccCC-CcEEEECCCCCccHHHHHHHHHHHcCC
Confidence 97543321 245667788776655 799999999999999999999999999
Q ss_pred CHHHHHHHHhhhc
Q 003509 375 CASQISGQTITSN 387 (814)
Q Consensus 375 ~~edIiaDYlLSn 387 (814)
+.++|++||++||
T Consensus 152 ~~~~I~~DY~lSn 164 (164)
T PF13350_consen 152 PDEDIIADYLLSN 164 (164)
T ss_dssp -HHHHHHHHHGGG
T ss_pred CHHHHHHHHHhcC
Confidence 9999999999997
No 3
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=99.86 E-value=1.2e-21 Score=220.67 Aligned_cols=138 Identities=37% Similarity=0.648 Sum_probs=109.1
Q ss_pred ccccCCchhHHhhcccccCCEEEEEecCCc-hHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcC-CCCccceeeec-cC
Q 003509 672 LAFTHPSTQQQMLMWKTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARI-PGFGFVQTFYL-QD 748 (814)
Q Consensus 672 ~~~~~ps~~~~~l~w~~~~kkVlIV~K~~~-ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~-p~~~~v~~~~~-~~ 748 (814)
+..+.+|++|..|.|.++|++|+||+|+.+ ++.+.+.+|++||.+.+|++|++++..+..+... +.......+.. ..
T Consensus 176 ~~~~~~~~~~~~l~w~~~p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~ 255 (508)
T PLN02935 176 ITTAERSSKQISLKWESDPQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKE 255 (508)
T ss_pred eeeccCCCceEEeeecCCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccch
Confidence 334567899999999999999999999998 7899999999999833799999988765443110 00011100000 01
Q ss_pred cccccCcccEEEEEcCchhHHHHHhhhcCCCCcEEEEeCCCcccCCCCCcccHHHHHhhhh
Q 003509 749 TSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPVSSYLNSLCFLS 809 (814)
Q Consensus 749 ~~~l~~~vDLVIvLGGDGTILrAArlf~~s~~PILGINlGrLGFLTe~~~dei~eaLe~L~ 809 (814)
..++...+|+||+||||||||+|+|++....+||||||+|+|||||++++++++++|++|.
T Consensus 256 ~~~l~~~~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN~G~LGFLt~i~~~e~~~~Le~il 316 (508)
T PLN02935 256 ILLLHTKVDLVITLGGDGTVLWAASMFKGPVPPVVPFSMGSLGFMTPFHSEQYRDCLDAIL 316 (508)
T ss_pred hhhcccCCCEEEEECCcHHHHHHHHHhccCCCcEEEEeCCCcceecccCHHHHHHHHHHHH
Confidence 1224467999999999999999999999999999999999999999999999999999985
No 4
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.83 E-value=2.1e-20 Score=185.19 Aligned_cols=123 Identities=23% Similarity=0.263 Sum_probs=87.6
Q ss_pred cCCCccceeecCCccccccCCCcceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEee
Q 003509 244 LFANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIP 323 (814)
Q Consensus 244 ~i~Nfr~V~~~~~~d~~~~~~~e~~LYRSGqpT~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIP 323 (814)
.+.||..|- ..+||||+|++.++++|+++|+||||+||++. .. .+...+++..||+++|+|
T Consensus 3 pP~nF~~V~--------------~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~-~~----~~~~~f~~~~~I~l~~~~ 63 (164)
T PF03162_consen 3 PPLNFGMVE--------------PGVYRSAQPTPANFPFLERLGLKTIINLRPEP-PS----QDFLEFAEENGIKLIHIP 63 (164)
T ss_dssp --TT-EEEE--------------TTEEEESS--HHHHHHHHHHT-SEEEE--SS--------HHHHHHHHHTT-EEEE--
T ss_pred CCccccCCC--------------CCccCCCCCChhhHHHHHHCCCceEEEecCCC-CC----HHHHHHHhhcCceEEEec
Confidence 356788885 38999999999999999999999999999875 11 133447889999999999
Q ss_pred cCCCCC----CCHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHHHHhCCCCHHHHHHHHhh
Q 003509 324 VEVRTA----PTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTIT 385 (814)
Q Consensus 324 V~d~~~----ps~e~v~~fleiL~d~~~~PVLVHCtAGKDRTGal~aLLl~l~GV~~edIiaDYlL 385 (814)
+..... .+.+.+.+.++++.+..++||||||..|+||||++++|+|.+.||+...|+++|..
T Consensus 64 ~~~~~~~~~~~~~~~v~~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W~~~~i~~Ey~~ 129 (164)
T PF03162_consen 64 MSSSKDPWVPISEEQVAEALEIILDPRNYPVLIHCNHGKDRTGLVVGCLRKLQGWSLSSIFDEYRR 129 (164)
T ss_dssp -----GGG----HHHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHHHHTTB-HHHHHHHHHH
T ss_pred cccccCccccCCHHHHHHHHHHHhCCCCCCEEEEeCCCCcchhhHHHHHHHHcCCCHHHHHHHHHH
Confidence 986544 46788888988887888999999999999999999999999999999999999984
No 5
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.83 E-value=6.1e-20 Score=175.99 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=95.6
Q ss_pred ceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchh--hhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhc
Q 003509 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYE--AAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN 344 (814)
Q Consensus 267 ~~LYRSGqpT~eDla~L~~lGIKTVIDLRsee~E~~~~p--~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d 344 (814)
..+|||+|++++|++.|+++|||||||||++. |....| ..+...+...|++|+|+||... .++.+++.+|.+++.
T Consensus 7 ~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~-E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~-~~~~~~v~~f~~~~~- 83 (135)
T TIGR01244 7 EHLYVSPQLTKADAAQAAQLGFKTVINNRPDR-EEESQPDFAQIKAAAEAAGVTYHHQPVTAG-DITPDDVETFRAAIG- 83 (135)
T ss_pred CCeeEcCCCCHHHHHHHHHCCCcEEEECCCCC-CCCCCCCHHHHHHHHHHCCCeEEEeecCCC-CCCHHHHHHHHHHHH-
Confidence 47999999999999999999999999999986 333222 1223456778999999999854 578999999999995
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHhCCCCHHHHHHHH
Q 003509 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQT 383 (814)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGal~aLLl~l~GV~~edIiaDY 383 (814)
..++|||+||++|| |||+++++++...|++.++|++.-
T Consensus 84 ~~~~pvL~HC~sG~-Rt~~l~al~~~~~g~~~~~i~~~~ 121 (135)
T TIGR01244 84 AAEGPVLAYCRSGT-RSSLLWGFRQAAEGVPVEEIVRRA 121 (135)
T ss_pred hCCCCEEEEcCCCh-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 56799999999999 999999998888899999998764
No 6
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=99.81 E-value=2.9e-20 Score=202.36 Aligned_cols=149 Identities=32% Similarity=0.517 Sum_probs=114.9
Q ss_pred ccceeeecCCcccccCCchhHHhhcccccCCEEEEEecCCchHHHHHHHHHHHHhcCC-CeEEEEccchhhHh--hcC--
Q 003509 661 SCNREKVTESSLAFTHPSTQQQMLMWKTTPRTVLVLKKPGPALMEEAKEVASFLYHQE-KMNILVEPDVHDIF--ARI-- 735 (814)
Q Consensus 661 sc~r~~~~~s~~~~~~ps~~~~~l~w~~~~kkVlIV~K~~~ea~~~a~eLi~~L~e~~-Gi~V~ve~~~a~~l--~~~-- 735 (814)
||+++-...+...-.-+.+..|.+.|-+++++|+|.++.+.+..+..+|+++||.+.. .+.|+++..+++.. ...
T Consensus 65 sn~~~~~~~~~~~~~~~~~~s~~l~~~~p~~~~lv~K~~d~s~~~~~~Elv~~ll~~~~~i~V~v~~~~~~~~~f~~~~~ 144 (409)
T KOG2178|consen 65 SNSRELMSNVAAVRSIQKSLSQRLIWLKPPKNLLVTKKNDESVLEKFVELVEWLLQTFPNITVYVEDKVAKDKQFSAGNL 144 (409)
T ss_pred ccchhhhhhhhhhhhccchhhhchhccCCCceEEEEcCCcHHHHHHHHHHHHHHHhhCCCeEEEechhhhhhhhhcccch
Confidence 5555423323333344455668999999999888888887789999999999999854 59999999888743 110
Q ss_pred ----CCCccceeeeccC-cccccCcccEEEEEcCchhHHHHHhhhcCCCCcEEEEeCCCcccCCCCCcccHHHHHhhhhc
Q 003509 736 ----PGFGFVQTFYLQD-TSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPVSSYLNSLCFLSL 810 (814)
Q Consensus 736 ----p~~~~v~~~~~~~-~~~l~~~vDLVIvLGGDGTILrAArlf~~s~~PILGINlGrLGFLTe~~~dei~eaLe~L~~ 810 (814)
.....+. +|..+ ..++...+|+|||||||||+|||+++|++..|||+.|++|+|||||.|+++++++.|.+++-
T Consensus 145 ~e~~~~~~~i~-y~~~e~~~d~~~~~D~iItLGGDGTvL~aS~LFq~~VPPV~sFslGslGFLtpf~f~~f~~~l~~v~~ 223 (409)
T KOG2178|consen 145 DESFGVKERIL-YWTTEGCDDLPNRFDLIITLGGDGTVLYASSLFQRSVPPVLSFSLGSLGFLTPFPFANFQEQLARVLN 223 (409)
T ss_pred hhcccchhceE-eeccccccccccceeEEEEecCCccEEEehhhhcCCCCCeEEeecCCccccccccHHHHHHHHHHHhc
Confidence 0011122 22222 35678899999999999999999999999999999999999999999999999999999864
No 7
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.81 E-value=9.7e-20 Score=194.88 Aligned_cols=111 Identities=24% Similarity=0.371 Sum_probs=94.4
Q ss_pred cCCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhH
Q 003509 689 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 768 (814)
Q Consensus 689 ~~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTI 768 (814)
++++|+|++|+.+++.+.+.+|.+||.+ +|+++++++..+..+. .++ ....++.+.+|+||+|||||||
T Consensus 9 ~~~~i~ii~~~~~~~~~~~~~i~~~l~~-~g~~~~~~~~~~~~~~-~~~---------~~~~~~~~~~Dlvi~iGGDGT~ 77 (287)
T PRK14077 9 NIKKIGLVTRPNVSLDKEILKLQKILSI-YKVEILLEKESAEILD-LPG---------YGLDELFKISDFLISLGGDGTL 77 (287)
T ss_pred cCCEEEEEeCCcHHHHHHHHHHHHHHHH-CCCEEEEecchhhhhc-ccc---------cchhhcccCCCEEEEECCCHHH
Confidence 4789999999988888999999999988 8999999887655442 111 1112344579999999999999
Q ss_pred HHHHhhhcCCCCcEEEEeCCCcccCCCCCcccHHHHHhhhhc
Q 003509 769 LHASNLFRGAVPPVISFNLGSLGFLTSHPVSSYLNSLCFLSL 810 (814)
Q Consensus 769 LrAArlf~~s~~PILGINlGrLGFLTe~~~dei~eaLe~L~~ 810 (814)
|+|+|++...++||+|||+|+|||||++++++++++|++|..
T Consensus 78 L~aa~~~~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~ 119 (287)
T PRK14077 78 ISLCRKAAEYDKFVLGIHAGHLGFLTDITVDEAEKFFQAFFQ 119 (287)
T ss_pred HHHHHHhcCCCCcEEEEeCCCcccCCcCCHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999853
No 8
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.81 E-value=8.3e-20 Score=196.15 Aligned_cols=117 Identities=23% Similarity=0.415 Sum_probs=94.6
Q ss_pred ccccCCEEEEEecCCc-hHHHHHHHHHHHHhcCCCeEEEEccchhh---Hhh-cCCCCccceeeeccCcccccCcccEEE
Q 003509 686 WKTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHD---IFA-RIPGFGFVQTFYLQDTSDLHERVDFVA 760 (814)
Q Consensus 686 w~~~~kkVlIV~K~~~-ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~---~l~-~~p~~~~v~~~~~~~~~~l~~~vDLVI 760 (814)
|++++++|+|+.|+.+ ++.+.+.+|.+||.+ +|+++++++.... .+. ..++. ...+..++.+.+|+||
T Consensus 1 ~~~~~~~i~ii~~~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~D~vi 73 (296)
T PRK04539 1 MNSPFHNIGIVTRPNTPDIQDTAHTLITFLKQ-HGFTVYLDEVGIKEGCIYTQDTVGC------HIVNKTELGQYCDLVA 73 (296)
T ss_pred CCCCCCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecccccccchhccccccc------cccchhhcCcCCCEEE
Confidence 5678999999999998 789999999999998 8999999764221 110 00010 0012234455799999
Q ss_pred EEcCchhHHHHHhhhcCCCCcEEEEeCCCcccCCCCCcccHHHHHhhhh
Q 003509 761 CLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPVSSYLNSLCFLS 809 (814)
Q Consensus 761 vLGGDGTILrAArlf~~s~~PILGINlGrLGFLTe~~~dei~eaLe~L~ 809 (814)
+||||||||+|+|++...++||+|||+|+|||||++++++++++|++|.
T Consensus 74 ~lGGDGT~L~aa~~~~~~~~PilGIN~G~lGFL~~~~~~~~~~~l~~i~ 122 (296)
T PRK04539 74 VLGGDGTFLSVAREIAPRAVPIIGINQGHLGFLTQIPREYMTDKLLPVL 122 (296)
T ss_pred EECCcHHHHHHHHHhcccCCCEEEEecCCCeEeeccCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986
No 9
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.79 E-value=2.4e-19 Score=192.22 Aligned_cols=117 Identities=19% Similarity=0.302 Sum_probs=96.3
Q ss_pred ccccCCEEEEEecCCc-hHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcC
Q 003509 686 WKTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGG 764 (814)
Q Consensus 686 w~~~~kkVlIV~K~~~-ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGG 764 (814)
|+..+++|+|+.|+.+ ++.+.+.++.+||.+ +|+++++++..+..+. ... ....+..++.+.+|+||+|||
T Consensus 1 ~~~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~-~g~~v~~~~~~~~~~~-~~~------~~~~~~~~~~~~~d~vi~lGG 72 (292)
T PRK03378 1 MNNHFKCIGIVGHPRHPTALTTHEMLYHWLTS-KGYEVIVEQQIAHELQ-LKN------VKTGTLAEIGQQADLAIVVGG 72 (292)
T ss_pred CCccCCEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcC-ccc------ccccchhhcCCCCCEEEEECC
Confidence 4567899999999998 789999999999988 8999999876554331 010 000122344557999999999
Q ss_pred chhHHHHHhhhcCCCCcEEEEeCCCcccCCCCCcccHHHHHhhhhc
Q 003509 765 DGVILHASNLFRGAVPPVISFNLGSLGFLTSHPVSSYLNSLCFLSL 810 (814)
Q Consensus 765 DGTILrAArlf~~s~~PILGINlGrLGFLTe~~~dei~eaLe~L~~ 810 (814)
|||||+|+|.+...++||||||+|+|||||++++++++++|++|..
T Consensus 73 DGT~L~aa~~~~~~~~Pilgin~G~lGFl~~~~~~~~~~~l~~i~~ 118 (292)
T PRK03378 73 DGNMLGAARVLARYDIKVIGINRGNLGFLTDLDPDNALQQLSDVLE 118 (292)
T ss_pred cHHHHHHHHHhcCCCCeEEEEECCCCCcccccCHHHHHHHHHHHHc
Confidence 9999999999999899999999999999999999999999999864
No 10
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.79 E-value=3.1e-19 Score=192.56 Aligned_cols=121 Identities=29% Similarity=0.382 Sum_probs=94.8
Q ss_pred ccCCEEEEEecCCc-hHHHHHHHHHHHHhcCCCeEEEEccchhhHhhc-CCCCc-cceeeeccC-cccccCcccEEEEEc
Q 003509 688 TTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFAR-IPGFG-FVQTFYLQD-TSDLHERVDFVACLG 763 (814)
Q Consensus 688 ~~~kkVlIV~K~~~-ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~-~p~~~-~v~~~~~~~-~~~l~~~vDLVIvLG 763 (814)
+++++|+|+.|+.+ ++.+.+.+|.+||.+ +|++|++++..+..+.. .+..+ .+. +...+ ...+.+.+|+||+||
T Consensus 3 ~~~~~I~iv~~~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~vi~lG 80 (306)
T PRK03372 3 TASRRVLLVAHTGRDEATEAARRVAKQLGD-AGIGVRVLDAEAVDLGATHPAPDDFRA-MEVVDADPDAADGCELVLVLG 80 (306)
T ss_pred CCccEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEeechhhhhcccccccccccc-cccccchhhcccCCCEEEEEc
Confidence 56899999999998 788999999999998 89999998765543321 00000 000 00001 123445799999999
Q ss_pred CchhHHHHHhhhcCCCCcEEEEeCCCcccCCCCCcccHHHHHhhhhc
Q 003509 764 GDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPVSSYLNSLCFLSL 810 (814)
Q Consensus 764 GDGTILrAArlf~~s~~PILGINlGrLGFLTe~~~dei~eaLe~L~~ 810 (814)
||||||+|+|++...++||||||+|+|||||++++++++++|++|..
T Consensus 81 GDGT~L~aar~~~~~~~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~ 127 (306)
T PRK03372 81 GDGTILRAAELARAADVPVLGVNLGHVGFLAEAEAEDLDEAVERVVD 127 (306)
T ss_pred CCHHHHHHHHHhccCCCcEEEEecCCCceeccCCHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999863
No 11
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.79 E-value=4.2e-19 Score=191.47 Aligned_cols=118 Identities=18% Similarity=0.246 Sum_probs=93.0
Q ss_pred CCEEEEEecCCc-hHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCc--cc-eeeeccCcccccCcccEEEEEcCc
Q 003509 690 PRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFG--FV-QTFYLQDTSDLHERVDFVACLGGD 765 (814)
Q Consensus 690 ~kkVlIV~K~~~-ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~--~v-~~~~~~~~~~l~~~vDLVIvLGGD 765 (814)
|++|+|+.|+.+ ++.+.+.+|.+||.+ +|++++++++.+..+.. +... .. ......+..++.+.+|++|+||||
T Consensus 1 m~~igiv~n~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGD 78 (305)
T PRK02649 1 MPKAGIIYNDGKPLAVRTAEELQDKLEA-AGWEVVRASSSGGILGY-ANPDQPVCHTGIDQLVPPGFDSSMKFAIVLGGD 78 (305)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCc-cccccccccccccccChhhcccCcCEEEEEeCc
Confidence 578999999998 789999999999998 89999998765543321 1000 00 000001123444579999999999
Q ss_pred hhHHHHHhhhcCCCCcEEEEeCCCcccCCCCCcccHHHHHhhhh
Q 003509 766 GVILHASNLFRGAVPPVISFNLGSLGFLTSHPVSSYLNSLCFLS 809 (814)
Q Consensus 766 GTILrAArlf~~s~~PILGINlGrLGFLTe~~~dei~eaLe~L~ 809 (814)
||||+|+|++...++||||||+|+|||||++++++++++|++|.
T Consensus 79 GTlL~aar~~~~~~iPilGIN~G~lGFLt~~~~~~~~~~l~~l~ 122 (305)
T PRK02649 79 GTVLSAARQLAPCGIPLLTINTGHLGFLTEAYLNQLDEAIDQVL 122 (305)
T ss_pred HHHHHHHHHhcCCCCcEEEEeCCCCcccccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999986
No 12
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.78 E-value=5.3e-19 Score=189.64 Aligned_cols=116 Identities=20% Similarity=0.304 Sum_probs=92.0
Q ss_pred EEEEEecCCc-hHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeecc-CcccccCcccEEEEEcCchhHH
Q 003509 692 TVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQ-DTSDLHERVDFVACLGGDGVIL 769 (814)
Q Consensus 692 kVlIV~K~~~-ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~-~~~~l~~~vDLVIvLGGDGTIL 769 (814)
+|+|+.|+.+ ++.+.+.+|.+||.+ +|+++++++..+..+.....+.. ..... +..++.+.+|+||+||||||||
T Consensus 2 ~igii~~~~~~~~~~~~~~i~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dlvi~lGGDGT~L 78 (292)
T PRK01911 2 KIAIFGQTYQESASPYIQELFDELEE-RGAEVLIEEKFLDFLKQDLKFHP--SYDTFSDNEELDGSADMVISIGGDGTFL 78 (292)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhhcccccccc--ccccccchhhcccCCCEEEEECCcHHHH
Confidence 6999999998 788999999999988 89999998766554321000000 00000 1134445799999999999999
Q ss_pred HHHhhhcCCCCcEEEEeCCCcccCCCCCcccHHHHHhhhhc
Q 003509 770 HASNLFRGAVPPVISFNLGSLGFLTSHPVSSYLNSLCFLSL 810 (814)
Q Consensus 770 rAArlf~~s~~PILGINlGrLGFLTe~~~dei~eaLe~L~~ 810 (814)
+|+|++...++||||||+|+|||||++++++++++|++|..
T Consensus 79 ~aa~~~~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~ 119 (292)
T PRK01911 79 RTATYVGNSNIPILGINTGRLGFLATVSKEEIEETIDELLN 119 (292)
T ss_pred HHHHHhcCCCCCEEEEecCCCCcccccCHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999863
No 13
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=99.76 E-value=2.7e-18 Score=184.11 Aligned_cols=116 Identities=24% Similarity=0.407 Sum_probs=94.9
Q ss_pred ccccCCEEEEEecCCc-hHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcC
Q 003509 686 WKTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGG 764 (814)
Q Consensus 686 w~~~~kkVlIV~K~~~-ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGG 764 (814)
|+..+++|+|+.|+.+ ++.+.+.++++||++ +|++++++.......... ... ..+..++.+.+|+||++||
T Consensus 1 ~~~~~~~v~iv~~~~~~~~~e~~~~i~~~L~~-~g~~v~v~~~~~~~~~~~-~~~------~~~~~~~~~~~d~vi~~GG 72 (291)
T PRK02155 1 MKSQFKTVALIGRYQTPGIAEPLESLAAFLAK-RGFEVVFEADTARNIGLT-GYP------ALTPEEIGARADLAVVLGG 72 (291)
T ss_pred CCCcCCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCcc-ccc------ccChhHhccCCCEEEEECC
Confidence 4567899999999998 888999999999988 899999977654432110 000 0122344457999999999
Q ss_pred chhHHHHHhhhcCCCCcEEEEeCCCcccCCCCCcccHHHHHhhhh
Q 003509 765 DGVILHASNLFRGAVPPVISFNLGSLGFLTSHPVSSYLNSLCFLS 809 (814)
Q Consensus 765 DGTILrAArlf~~s~~PILGINlGrLGFLTe~~~dei~eaLe~L~ 809 (814)
|||||+|+|.+...++||||||+|+||||++++++++++.|++|.
T Consensus 73 DGt~l~~~~~~~~~~~pilGIn~G~lGFL~~~~~~~~~~~l~~~~ 117 (291)
T PRK02155 73 DGTMLGIGRQLAPYGVPLIGINHGRLGFITDIPLDDMQETLPPML 117 (291)
T ss_pred cHHHHHHHHHhcCCCCCEEEEcCCCccccccCCHHHHHHHHHHHH
Confidence 999999999999899999999999999999999999999999985
No 14
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.75 E-value=3.5e-18 Score=197.83 Aligned_cols=119 Identities=20% Similarity=0.386 Sum_probs=97.3
Q ss_pred hcccccCCEEEEEecCCc-hHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEE
Q 003509 684 LMWKTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACL 762 (814)
Q Consensus 684 l~w~~~~kkVlIV~K~~~-ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvL 762 (814)
-.|..+|++|+|+.|+.+ ++.+.+++|++||.+ +|++|++++..+..+... .. +. . ....+ ..++|+||+|
T Consensus 284 ~~w~~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~-~~~~v~~~~~~~~~~~~~--~~--~~-~-~~~~~-~~~~dlvi~l 355 (569)
T PRK14076 284 NKWRIKPTKFGIVSRIDNEEAINLALKIIKYLDS-KGIPYELESFLYNKLKNR--LN--EE-C-NLIDD-IEEISHIISI 355 (569)
T ss_pred hhcccCCcEEEEEcCCCCHHHHHHHHHHHHHHHH-CCCEEEEechhhhhhccc--cc--cc-c-ccccc-ccCCCEEEEE
Confidence 369999999999999988 789999999999998 899999987655443210 00 00 0 00111 2368999999
Q ss_pred cCchhHHHHHhhhcCCCCcEEEEeCCCcccCCCCCcccHHHHHhhhhc
Q 003509 763 GGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPVSSYLNSLCFLSL 810 (814)
Q Consensus 763 GGDGTILrAArlf~~s~~PILGINlGrLGFLTe~~~dei~eaLe~L~~ 810 (814)
|||||||+|+|++...++||||||+|+|||||+++++++++.|++|..
T Consensus 356 GGDGT~L~aa~~~~~~~~PilGin~G~lGFL~~~~~~~~~~~l~~~~~ 403 (569)
T PRK14076 356 GGDGTVLRASKLVNGEEIPIICINMGTVGFLTEFSKEEIFKAIDSIIS 403 (569)
T ss_pred CCcHHHHHHHHHhcCCCCCEEEEcCCCCCcCcccCHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999863
No 15
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.73 E-value=1e-17 Score=156.36 Aligned_cols=100 Identities=28% Similarity=0.375 Sum_probs=72.9
Q ss_pred ceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcc--hhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhc
Q 003509 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNF--YEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN 344 (814)
Q Consensus 267 ~~LYRSGqpT~eDla~L~~lGIKTVIDLRsee~E~~~--~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d 344 (814)
..||.||||+++|++.|+++|||||||||++. |.+. ....+...++..|+.|+|+||.. ..++.+++++|.+++.
T Consensus 7 ~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~-E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~-~~~~~~~v~~f~~~l~- 83 (110)
T PF04273_consen 7 DDLSVSGQPSPEDLAQLAAQGFKTVINLRPDG-EEPGQPSSAEEAAAAEALGLQYVHIPVDG-GAITEEDVEAFADALE- 83 (110)
T ss_dssp TTEEEECS--HHHHHHHHHCT--EEEE-S-TT-STTT-T-HHCHHHHHHHCT-EEEE----T-TT--HHHHHHHHHHHH-
T ss_pred CCeEECCCCCHHHHHHHHHCCCcEEEECCCCC-CCCCCCCHHHHHHHHHHcCCeEEEeecCC-CCCCHHHHHHHHHHHH-
Confidence 47999999999999999999999999999996 3332 22346678899999999999994 5789999999999995
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHH
Q 003509 345 SSKKPLYLHSKEGVWRTYAMVSRWRQ 370 (814)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGal~aLLl~ 370 (814)
..++|||+||++|. |.+++|+|...
T Consensus 84 ~~~~Pvl~hC~sG~-Ra~~l~~l~~~ 108 (110)
T PF04273_consen 84 SLPKPVLAHCRSGT-RASALWALAQA 108 (110)
T ss_dssp TTTTSEEEE-SCSH-HHHHHHHHHHH
T ss_pred hCCCCEEEECCCCh-hHHHHHHHHhh
Confidence 56789999999999 99999998754
No 16
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.72 E-value=2.5e-17 Score=177.06 Aligned_cols=113 Identities=24% Similarity=0.414 Sum_probs=92.6
Q ss_pred cCCEEEEEecCCc-hHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchh
Q 003509 689 TPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV 767 (814)
Q Consensus 689 ~~kkVlIV~K~~~-ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGT 767 (814)
.+++|+||.|+.+ ++.+.++++.+||.+ +|+++++++...+.+... .. . . .....+.+.+|+||++|||||
T Consensus 3 ~~~~v~iv~~~~k~~a~e~~~~i~~~L~~-~giev~v~~~~~~~~~~~-~~---~-~--~~~~~~~~~~d~vi~~GGDGt 74 (295)
T PRK01231 3 SFRNIGLIGRLGSSSVVETLRRLKDFLLD-RGLEVILDEETAEVLPGH-GL---Q-T--VSRKLLGEVCDLVIVVGGDGS 74 (295)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCcc-cc---c-c--cchhhcccCCCEEEEEeCcHH
Confidence 3778999999998 788999999999988 899999977654333110 00 0 0 112234457999999999999
Q ss_pred HHHHHhhhcCCCCcEEEEeCCCcccCCCCCcccHHHHHhhhh
Q 003509 768 ILHASNLFRGAVPPVISFNLGSLGFLTSHPVSSYLNSLCFLS 809 (814)
Q Consensus 768 ILrAArlf~~s~~PILGINlGrLGFLTe~~~dei~eaLe~L~ 809 (814)
||++++.+...++||+|||+|+|||||++++++++++|+++.
T Consensus 75 ~l~~~~~~~~~~~Pvlgin~G~lGFl~~~~~~~~~~~l~~~~ 116 (295)
T PRK01231 75 LLGAARALARHNVPVLGINRGRLGFLTDIRPDELEFKLAEVL 116 (295)
T ss_pred HHHHHHHhcCCCCCEEEEeCCcccccccCCHHHHHHHHHHHH
Confidence 999999999899999999999999999999999999999986
No 17
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.70 E-value=6e-17 Score=172.26 Aligned_cols=102 Identities=24% Similarity=0.401 Sum_probs=83.8
Q ss_pred EEEEEecCCc-hHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHHH
Q 003509 692 TVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (814)
Q Consensus 692 kVlIV~K~~~-ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTILr 770 (814)
+|+|++|+.+ ++.+.++++++|| + +|++++++.+.++.+.. .. .+..++ ++|++|+||||||||+
T Consensus 2 ~i~iv~~~~~~~~~~~~~~i~~~l-~-~g~~~~~~~~~~~~~~~-~~---------~~~~~~--~~D~vi~lGGDGT~L~ 67 (271)
T PRK01185 2 KVAFVIRKDCKRCIKIAKSIIELL-P-PDWEIIYEMEAAKALGM-DG---------LDIEEI--NADVIITIGGDGTILR 67 (271)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHH-h-cCCEEEEechhhhhcCc-cc---------Cccccc--CCCEEEEEcCcHHHHH
Confidence 5999999998 7899999999999 5 69999998765543321 00 011222 7899999999999999
Q ss_pred HHhhhcCCCCcEEEEeCCCcccCCCCCcccHHHHHhhhhc
Q 003509 771 ASNLFRGAVPPVISFNLGSLGFLTSHPVSSYLNSLCFLSL 810 (814)
Q Consensus 771 AArlf~~s~~PILGINlGrLGFLTe~~~dei~eaLe~L~~ 810 (814)
|+|.+. +||+|||+|+|||||++++++++++|+++..
T Consensus 68 a~~~~~---~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~ 104 (271)
T PRK01185 68 TLQRAK---GPILGINMGGLGFLTEIEIDEVGSAIKKLIR 104 (271)
T ss_pred HHHHcC---CCEEEEECCCCccCcccCHHHHHHHHHHHHc
Confidence 999874 5999999999999999999999999999864
No 18
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=99.68 E-value=5.8e-17 Score=172.71 Aligned_cols=118 Identities=27% Similarity=0.377 Sum_probs=91.9
Q ss_pred EEEEEecCCc-hHHHHHHHHHHHHhcCC-CeEEEEccchhhHhhcCC----CCcc----ce---eeeccCcccccCcccE
Q 003509 692 TVLVLKKPGP-ALMEEAKEVASFLYHQE-KMNILVEPDVHDIFARIP----GFGF----VQ---TFYLQDTSDLHERVDF 758 (814)
Q Consensus 692 kVlIV~K~~~-ea~~~a~eLi~~L~e~~-Gi~V~ve~~~a~~l~~~p----~~~~----v~---~~~~~~~~~l~~~vDL 758 (814)
||+|+.|+.+ ++.+.++++++||.+ + ++.++++..+.+...... .... .. ...........+.+|+
T Consensus 1 kVgii~np~~~~~~~~~~~~~~~L~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 79 (285)
T PF01513_consen 1 KVGIIANPNKPEAIELANELARWLLE-KQGIEVLVEGSIAEDILEAIKKRYEVISVEKKLKTLDDTRNALEEMLEEGVDL 79 (285)
T ss_dssp -EEEEESSCGHCCCHHHHHHHHHHHH-TTTEEEEEEHHHHHSHCCCSHSCCCCCTTSHCCCCTCEEEECCHHHHCCCSSE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHHh-CCCEEEEEChHHHHHHHHhccccccccccccccccccccchhhhhhcccCCCE
Confidence 6999999998 899999999999998 6 999999887665432110 0000 00 0001112233679999
Q ss_pred EEEEcCchhHHHHHhhhcCCCCcEEEEeCCCcccCCCCCcccHHHHHhhhhc
Q 003509 759 VACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPVSSYLNSLCFLSL 810 (814)
Q Consensus 759 VIvLGGDGTILrAArlf~~s~~PILGINlGrLGFLTe~~~dei~eaLe~L~~ 810 (814)
||+||||||+|+|+|.+...++||||||+|++|||++++++++.+.|+++..
T Consensus 80 ii~lGGDGT~L~~~~~~~~~~~Pilgin~G~lgfl~~~~~~~~~~~l~~~~~ 131 (285)
T PF01513_consen 80 IIVLGGDGTFLRAARLFGDYDIPILGINTGTLGFLTEFEPEDIEEALEKILA 131 (285)
T ss_dssp EEEEESHHHHHHHHHHCTTST-EEEEEESSSSTSSSSEEGCGHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHhccCCCcEEeecCCCccccccCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999998864
No 19
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.68 E-value=9.5e-17 Score=170.26 Aligned_cols=89 Identities=20% Similarity=0.310 Sum_probs=78.3
Q ss_pred EEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHHHH
Q 003509 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHA 771 (814)
Q Consensus 692 kVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTILrA 771 (814)
+|+|+.|...++.+.+.++.+||.+ +|+++ + .+++|+||+||||||||+|
T Consensus 2 ~i~Ii~~~~~~~~~~~~~l~~~l~~-~g~~~--~---------------------------~~~~Dlvi~iGGDGT~L~a 51 (265)
T PRK04885 2 KVAIISNGDPKSKRVASKLKKYLKD-FGFIL--D---------------------------EKNPDIVISVGGDGTLLSA 51 (265)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHH-cCCcc--C---------------------------CcCCCEEEEECCcHHHHHH
Confidence 5999999544888999999999987 68773 1 0257999999999999999
Q ss_pred HhhhcC--CCCcEEEEeCCCcccCCCCCcccHHHHHhhhhc
Q 003509 772 SNLFRG--AVPPVISFNLGSLGFLTSHPVSSYLNSLCFLSL 810 (814)
Q Consensus 772 Arlf~~--s~~PILGINlGrLGFLTe~~~dei~eaLe~L~~ 810 (814)
+|.+.. .++||+|||+|+|||||+++++++++.|++|..
T Consensus 52 ~~~~~~~~~~iPilGIN~G~lGFL~~~~~~~~~~~l~~i~~ 92 (265)
T PRK04885 52 FHRYENQLDKVRFVGVHTGHLGFYTDWRPFEVDKLVIALAK 92 (265)
T ss_pred HHHhcccCCCCeEEEEeCCCceecccCCHHHHHHHHHHHHc
Confidence 999997 799999999999999999999999999999874
No 20
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.67 E-value=1.2e-16 Score=169.30 Aligned_cols=92 Identities=15% Similarity=0.231 Sum_probs=81.5
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHH
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTIL 769 (814)
+++|+|+.|+.+++.+.++++.+||++ +|+++.++ .+.+|++|+||||||||
T Consensus 2 ~~~i~iv~~~~~~a~~~~~~l~~~l~~-~g~~~~~~---------------------------~~~~D~vi~lGGDGT~L 53 (264)
T PRK03501 2 RRNLFFFYKRDKELVEKVKPLKKIAEE-YGFTVVDH---------------------------PKNANIIVSIGGDGTFL 53 (264)
T ss_pred CcEEEEEECCCHHHHHHHHHHHHHHHH-CCCEEEcC---------------------------CCCccEEEEECCcHHHH
Confidence 348999999888888899999999988 79887631 03579999999999999
Q ss_pred HHHhhhcCC-CCcEEEEeC-CCcccCCCCCcccHHHHHhhhh
Q 003509 770 HASNLFRGA-VPPVISFNL-GSLGFLTSHPVSSYLNSLCFLS 809 (814)
Q Consensus 770 rAArlf~~s-~~PILGINl-GrLGFLTe~~~dei~eaLe~L~ 809 (814)
+|+|.+... .+||+|||+ |+|||||+++++++++.|+++.
T Consensus 54 ~a~~~~~~~~~~pilgIn~~G~lGFL~~~~~~~~~~~l~~i~ 95 (264)
T PRK03501 54 QAVRKTGFREDCLYAGISTKDQLGFYCDFHIDDLDKMIQAIT 95 (264)
T ss_pred HHHHHhcccCCCeEEeEecCCCCeEcccCCHHHHHHHHHHHH
Confidence 999998775 899999999 9999999999999999999885
No 21
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.65 E-value=2.4e-16 Score=167.79 Aligned_cols=96 Identities=24% Similarity=0.369 Sum_probs=76.6
Q ss_pred HHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHHHHHhhhcCCCCcEEEEe
Q 003509 707 AKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFN 786 (814)
Q Consensus 707 a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTILrAArlf~~s~~PILGIN 786 (814)
++++.+||.+ +|+++++++..+..+.. ... ...+..++.+.+|+||+||||||||+|+|.+...++||+|||
T Consensus 2 ~~~l~~~l~~-~g~~v~~~~~~~~~~~~-~~~------~~~~~~~~~~~~d~vi~iGGDGT~L~aa~~~~~~~~PilgIn 73 (272)
T PRK02231 2 HKNLFHWLKE-RGYQVLVEKEIAEQLNL-PEN------HLASLEEIGQRAQLAIVIGGDGNMLGRARVLAKYDIPLIGIN 73 (272)
T ss_pred HHHHHHHHHH-CCCEEEEecchhhhcCc-ccc------ccCChHHhCcCCCEEEEECCcHHHHHHHHHhccCCCcEEEEe
Confidence 5789999988 89999998765543321 100 001123444579999999999999999999999999999999
Q ss_pred CCCcccCCCCCcccHHHHHhhhhc
Q 003509 787 LGSLGFLTSHPVSSYLNSLCFLSL 810 (814)
Q Consensus 787 lGrLGFLTe~~~dei~eaLe~L~~ 810 (814)
+|+|||||+++++++.+.|+++..
T Consensus 74 ~G~lGFL~~~~~~~~~~~l~~~~~ 97 (272)
T PRK02231 74 RGNLGFLTDIDPKNAYEQLEACLE 97 (272)
T ss_pred CCCCcccccCCHHHHHHHHHHHHh
Confidence 999999999999999999988754
No 22
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.65 E-value=6.3e-16 Score=164.92 Aligned_cols=108 Identities=24% Similarity=0.383 Sum_probs=86.6
Q ss_pred EEEEEecCCc-hHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchhHH
Q 003509 692 TVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVIL 769 (814)
Q Consensus 692 kVlIV~K~~~-ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGTIL 769 (814)
+|+||.|+++ ++.+.+++|.+||++ +|+++.++............ .....+ ..++|+||++|||||||
T Consensus 2 ~v~iv~~~~k~~~~~~~~~I~~~L~~-~g~~v~v~~~~~~~~~~~~~---------~~~~~~~~~~~d~vi~iGGDGTlL 71 (277)
T PRK03708 2 RFGIVARRDKEEALKLAYRVYDFLKV-SGYEVVVDSETYEHLPEFSE---------EDVLPLEEMDVDFIIAIGGDGTIL 71 (277)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCcccc---------cccccccccCCCEEEEEeCcHHHH
Confidence 6999999998 889999999999998 89999987543322210000 011111 23789999999999999
Q ss_pred HHHhhhcCCCCcEEEEeCCCcccCCCCCcccHHHHHhhhhc
Q 003509 770 HASNLFRGAVPPVISFNLGSLGFLTSHPVSSYLNSLCFLSL 810 (814)
Q Consensus 770 rAArlf~~s~~PILGINlGrLGFLTe~~~dei~eaLe~L~~ 810 (814)
+|+| +...++||+|||+|++|||+++++++++++|+++..
T Consensus 72 ~a~~-~~~~~~pi~gIn~G~lGFl~~~~~~~~~~~l~~i~~ 111 (277)
T PRK03708 72 RIEH-KTKKDIPILGINMGTLGFLTEVEPEETFFALSRLLE 111 (277)
T ss_pred HHHH-hcCCCCeEEEEeCCCCCccccCCHHHHHHHHHHHHc
Confidence 9999 777899999999999999999999999999999863
No 23
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.63 E-value=2.4e-15 Score=141.39 Aligned_cols=111 Identities=19% Similarity=0.253 Sum_probs=98.5
Q ss_pred ceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchh--hhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhc
Q 003509 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYE--AAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN 344 (814)
Q Consensus 267 ~~LYRSGqpT~eDla~L~~lGIKTVIDLRsee~E~~~~p--~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d 344 (814)
..++.|||++++|+..++.+|||+|||.|++. |++..| +.++..++..|+.|.||||. ...++.++++.|.+.+ +
T Consensus 8 d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDg-Ee~~QP~~~~i~~aa~~aGl~y~~iPV~-~~~iT~~dV~~f~~Al-~ 84 (130)
T COG3453 8 DRLSVSGQISPADIASIAALGFKSIICNRPDG-EEPGQPGFAAIAAAAEAAGLTYTHIPVT-GGGITEADVEAFQRAL-D 84 (130)
T ss_pred cceeecCCCCHHHHHHHHHhccceecccCCCC-CCCCCCChHHHHHHHHhcCCceEEeecC-CCCCCHHHHHHHHHHH-H
Confidence 47889999999999999999999999999997 333333 46778899999999999998 5678999999999999 5
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHhCCCCHHHHHH
Q 003509 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISG 381 (814)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGal~aLLl~l~GV~~edIia 381 (814)
...+|||.||++|. |+-++|.+..+..|++.+++.+
T Consensus 85 eaegPVlayCrsGt-Rs~~ly~~~~~~~gm~~de~~a 120 (130)
T COG3453 85 EAEGPVLAYCRSGT-RSLNLYGLGELDGGMSRDEIEA 120 (130)
T ss_pred HhCCCEEeeecCCc-hHHHHHHHHHHhcCCCHHHHHH
Confidence 77899999999999 9999999998778999999865
No 24
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=99.62 E-value=1.3e-15 Score=162.57 Aligned_cols=109 Identities=28% Similarity=0.465 Sum_probs=93.1
Q ss_pred CEEEEEecCCc-hHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHH
Q 003509 691 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (814)
Q Consensus 691 kkVlIV~K~~~-ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTIL 769 (814)
++|+|++++.. ++...++.+..|+.. .+..+.++....+.+... . .+ .+.-.+.+|+|+++|||||+|
T Consensus 1 ~~~~i~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~l~~~--~----~~----~~~~~~~~d~ivvlGGDGtlL 69 (281)
T COG0061 1 KKVGIVGRPDKPEALKIAKRLYEFLKF-KGVTVEVDQELAEELKDF--A----DY----VDDDEEKADLIVVLGGDGTLL 69 (281)
T ss_pred CeEEEEecCCcHHHHHHHHHHHHHHHh-cCceEEEechhhhhcccc--c----cc----ccccccCceEEEEeCCcHHHH
Confidence 57999999998 788999999999997 799999988877766421 0 00 111136899999999999999
Q ss_pred HHHhhhcCCCCcEEEEeCCCcccCCCCCcccHHHHHhhhhc
Q 003509 770 HASNLFRGAVPPVISFNLGSLGFLTSHPVSSYLNSLCFLSL 810 (814)
Q Consensus 770 rAArlf~~s~~PILGINlGrLGFLTe~~~dei~eaLe~L~~ 810 (814)
+|+|++...++||+|||+|+|||||+++++++++.++++..
T Consensus 70 ~~~~~~~~~~~pilgin~G~lGFLt~~~~~~~~~~~~~~~~ 110 (281)
T COG0061 70 RAARLLARLDIPVLGINLGHLGFLTDFEPDELEKALDALLE 110 (281)
T ss_pred HHHHHhccCCCCEEEEeCCCcccccccCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999876
No 25
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.60 E-value=2.8e-15 Score=158.27 Aligned_cols=92 Identities=23% Similarity=0.282 Sum_probs=77.4
Q ss_pred EEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHHHH
Q 003509 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHA 771 (814)
Q Consensus 692 kVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTILrA 771 (814)
+++|++|+. +.+.+.++.++|.+ +|+.+.++.+.. ....++|+||+||||||||+|
T Consensus 2 ~~~~~~~~~--~~~~~~~~~~~l~~-~~~~~~~~~~~~---------------------~~~~~~d~vi~iGGDGT~L~a 57 (256)
T PRK14075 2 KLGIFYREE--KEKEAKFLKEKISK-EHEVVEFCEASA---------------------SGKVTADLIIVVGGDGTVLKA 57 (256)
T ss_pred EEEEEeCcc--HHHHHHHHHHHHHH-cCCeeEeecccc---------------------cccCCCCEEEEECCcHHHHHH
Confidence 678886665 56788999999998 798887654311 112478999999999999999
Q ss_pred HhhhcCCCCcEEEEeCCCcccCCCCCcccHHHHHhhhhc
Q 003509 772 SNLFRGAVPPVISFNLGSLGFLTSHPVSSYLNSLCFLSL 810 (814)
Q Consensus 772 Arlf~~s~~PILGINlGrLGFLTe~~~dei~eaLe~L~~ 810 (814)
+|.+ ++||+|||+|+||||++++++++++.|++|..
T Consensus 58 ~~~~---~~Pilgin~G~lGfl~~~~~~~~~~~l~~~~~ 93 (256)
T PRK14075 58 AKKV---GTPLVGFKAGRLGFLSSYTLEEIDRFLEDLKN 93 (256)
T ss_pred HHHc---CCCEEEEeCCCCccccccCHHHHHHHHHHHHc
Confidence 9998 89999999999999999999999999999764
No 26
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.60 E-value=2.5e-15 Score=159.04 Aligned_cols=86 Identities=21% Similarity=0.282 Sum_probs=74.2
Q ss_pred EEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHHHH
Q 003509 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHA 771 (814)
Q Consensus 692 kVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTILrA 771 (814)
++.|+.++..++.+.+.+|.+++.. .++. .+++|+||+||||||||+|
T Consensus 2 ~~~i~~~~~~~s~~~~~~l~~~~~~-~~~~-------------------------------~~~~D~vi~iGGDGT~L~a 49 (259)
T PRK00561 2 KYKIFASTTPQTEPVLPKLKKVLKK-KLAV-------------------------------EDGADYLFVLGGDGFFVST 49 (259)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHhh-CCCc-------------------------------cCCCCEEEEECCcHHHHHH
Confidence 6899999999888888888888764 2210 1357999999999999999
Q ss_pred HhhhcCCCCcEEEEeCCCcccCCCCCcccHHH-HHhhhh
Q 003509 772 SNLFRGAVPPVISFNLGSLGFLTSHPVSSYLN-SLCFLS 809 (814)
Q Consensus 772 Arlf~~s~~PILGINlGrLGFLTe~~~dei~e-aLe~L~ 809 (814)
+|.+...++||+|||+|+|||||+++++++++ .++++.
T Consensus 50 ~~~~~~~~iPilGIN~G~lGFL~~~~~~~~~~~~~~~l~ 88 (259)
T PRK00561 50 AANYNCAGCKVVGINTGHLGFYTSFNETDLDQNFANKLD 88 (259)
T ss_pred HHHhcCCCCcEEEEecCCCccccccCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998 777664
No 27
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.59 E-value=4.9e-15 Score=160.01 Aligned_cols=109 Identities=27% Similarity=0.335 Sum_probs=85.7
Q ss_pred cCCEEEEEecCCc-hHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchh
Q 003509 689 TPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV 767 (814)
Q Consensus 689 ~~kkVlIV~K~~~-ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGT 767 (814)
.+++|+||.|+++ .+.+.+.++.+||.+ +|+++.++....+... ... ........+|+||++|||||
T Consensus 2 ~~kkv~lI~n~~~~~~~~~~~~i~~~L~~-~g~~v~v~~~~~~~~~-~~~----------~~~~~~~~~d~vi~~GGDGT 69 (305)
T PRK02645 2 QLKQVIIAYKAGSSQAKEAAERCAKQLEA-RGCKVLMGPSGPKDNP-YPV----------FLASASELIDLAIVLGGDGT 69 (305)
T ss_pred CcCEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEecCchhhcc-ccc----------hhhccccCcCEEEEECCcHH
Confidence 3678999999987 778889999999987 8999988765333211 000 01223457899999999999
Q ss_pred HHHHHhhhcCCCCcEEEEeC-CCcccCCCCC--cccHHHHHhhhhc
Q 003509 768 ILHASNLFRGAVPPVISFNL-GSLGFLTSHP--VSSYLNSLCFLSL 810 (814)
Q Consensus 768 ILrAArlf~~s~~PILGINl-GrLGFLTe~~--~dei~eaLe~L~~ 810 (814)
||++++.+...++||+|||+ |+|||||++. .++ ++.|++|..
T Consensus 70 ~l~~~~~~~~~~~pv~gin~~G~lGFL~~~~~~~~~-~~~l~~i~~ 114 (305)
T PRK02645 70 VLAAARHLAPHDIPILSVNVGGHLGFLTHPRDLLQD-ESVWDRLQE 114 (305)
T ss_pred HHHHHHHhccCCCCEEEEecCCcceEecCchhhcch-HHHHHHHHc
Confidence 99999999989999999999 8999999985 444 788888753
No 28
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=99.49 E-value=2e-13 Score=141.33 Aligned_cols=126 Identities=21% Similarity=0.256 Sum_probs=106.8
Q ss_pred CccCCCccceeecCCccccccCCCcceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEE
Q 003509 242 HTLFANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIK 321 (814)
Q Consensus 242 ~t~i~Nfr~V~~~~~~d~~~~~~~e~~LYRSGqpT~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVh 321 (814)
.-..-||..|. ..|||||.|.+..+.+|+.+++|+||.|+++. ||.....+++..+|+++|
T Consensus 54 lipPlnFs~V~--------------~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~-----yp~~nl~f~~~~~Ik~~~ 114 (249)
T KOG1572|consen 54 LIPPLNFSMVD--------------NGLYRSGFPRPENFSFLKTLHLKSIISLCPEP-----YPEENLNFLESNGIKLYQ 114 (249)
T ss_pred ecCCccccccc--------------cceeecCCCCccchHHHHHhhhheEEEecCCC-----CChHHHHHHHhcCceEEE
Confidence 34567888876 38999999999999999999999999999975 443445589999999999
Q ss_pred eecCCCC----CC----CHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHHHHhCCCCHHHHHHHHhhh
Q 003509 322 IPVEVRT----AP----TMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTITS 386 (814)
Q Consensus 322 IPV~d~~----~p----s~e~v~~fleiL~d~~~~PVLVHCtAGKDRTGal~aLLl~l~GV~~edIiaDYlLS 386 (814)
|-+.... .| ..+.+...++++.+..++|+|+||+.||.|||++++|++.+++|+..-|+++|+.-
T Consensus 115 i~ie~~k~~~k~P~~~~~~~~i~~~l~~lld~~N~P~Lihc~rGkhRtg~lVgclRklq~W~lssil~Ey~~f 187 (249)
T KOG1572|consen 115 IGIEGEKDNKKEPFVNIPDHSIRKALKVLLDKRNYPILIHCKRGKHRTGCLVGCLRKLQNWSLSSILDEYLRF 187 (249)
T ss_pred EecccccccccCCCCCChHHHHHHHHHHHhcccCCceEEecCCCCcchhhhHHHHHHHhccchhHHHHHHHHh
Confidence 9998544 23 24567777777778999999999999999999999999999999999999999843
No 29
>PLN02929 NADH kinase
Probab=99.47 E-value=1.2e-13 Score=149.04 Aligned_cols=87 Identities=22% Similarity=0.308 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHHHHHhhhcCCCCc
Q 003509 702 ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPP 781 (814)
Q Consensus 702 ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTILrAArlf~~s~~P 781 (814)
...+.+..+.++|.+ +|+++..... . +......++|+||+||||||||+|+|.+ ...+|
T Consensus 31 ~h~~~~~~~~~~L~~-~gi~~~~v~r--~-----------------~~~~~~~~~Dlvi~lGGDGT~L~aa~~~-~~~iP 89 (301)
T PLN02929 31 VHKDTVNFCKDILQQ-KSVDWECVLR--N-----------------ELSQPIRDVDLVVAVGGDGTLLQASHFL-DDSIP 89 (301)
T ss_pred hhHHHHHHHHHHHHH-cCCEEEEeec--c-----------------ccccccCCCCEEEEECCcHHHHHHHHHc-CCCCc
Confidence 445667889999987 8998843211 0 0012235789999999999999999999 88999
Q ss_pred EEEEeCC------------------CcccCCCCCcccHHHHHhhhh
Q 003509 782 VISFNLG------------------SLGFLTSHPVSSYLNSLCFLS 809 (814)
Q Consensus 782 ILGINlG------------------rLGFLTe~~~dei~eaLe~L~ 809 (814)
|||||+| ++|||++++++++++.|+++.
T Consensus 90 vlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il 135 (301)
T PLN02929 90 VLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVL 135 (301)
T ss_pred EEEEECCCcccccccccccccccccCccccccCCHHHHHHHHHHHH
Confidence 9999999 799999999999999999986
No 30
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.46 E-value=9.8e-13 Score=124.44 Aligned_cols=114 Identities=11% Similarity=0.171 Sum_probs=84.8
Q ss_pred ceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCC-CCCHHHHHHHHHHHh--
Q 003509 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRT-APTMEQVEKFASLVS-- 343 (814)
Q Consensus 267 ~~LYRSGqpT~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~-~ps~e~v~~fleiL~-- 343 (814)
..||+|++++..++++|+++||++||||+.+. +. + ...|++|+|+|+.|.. .+..+.+....+++.
T Consensus 6 ~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~-~~--~--------~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~ 74 (138)
T smart00195 6 PHLYLGSYSSALNLALLKKLGITHVINVTNEV-PN--L--------NKKGFTYLGVPILDNTETKISPYFPEAVEFIEDA 74 (138)
T ss_pred CCeEECChhHcCCHHHHHHcCCCEEEEccCCC-CC--C--------CCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHH
Confidence 36999999999999999999999999998875 11 1 2468999999999742 333444444444442
Q ss_pred cCCCCcEEEeCccCCChHHHHHHHHHH-hCCCCHHHHHHHHhhhccccc
Q 003509 344 NSSKKPLYLHSKEGVWRTYAMVSRWRQ-YMARCASQISGQTITSNDVLL 391 (814)
Q Consensus 344 d~~~~PVLVHCtAGKDRTGal~aLLl~-l~GV~~edIiaDYlLSn~~l~ 391 (814)
...++||||||.+|++|||+++++++. ..|++.++|++..-...+...
T Consensus 75 ~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~ 123 (138)
T smart00195 75 EKKGGKVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIIS 123 (138)
T ss_pred hcCCCeEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccC
Confidence 245789999999999999977666544 469999999986654444333
No 31
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=99.45 E-value=8.7e-14 Score=146.42 Aligned_cols=130 Identities=15% Similarity=0.144 Sum_probs=99.1
Q ss_pred cceEEEcCCCCHhhHH--HHHHcCCcEEEEcCCCc-ccCcchhhhhHH-hhhcCCcEEEEeecCCCCCCCHHHHHHHHHH
Q 003509 266 EVTFCRGGQVTEEGLK--WLMEKGYKTIVDIRAER-VKDNFYEAAIDD-AILSGKVELIKIPVEVRTAPTMEQVEKFASL 341 (814)
Q Consensus 266 e~~LYRSGqpT~eDla--~L~~lGIKTVIDLRsee-~E~~~~p~~e~~-~~e~~GI~yVhIPV~d~~~ps~e~v~~flei 341 (814)
....|||++|.+.+.. ++..++++|+|+|+.+. .....+. .+.. .....++.....+.........+.+.+++++
T Consensus 52 ~~~~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l 130 (249)
T COG2365 52 PIIDYRSGQPVPVQPDPELLDALYLKTIINLRDESNTNVELYT-DHLINWDKAAIIMFESYRSFPTREDAAERLVELLQL 130 (249)
T ss_pred ceeEcCCCCcccccCCccccccccccccccccccchhhhhhhh-hhhhhhccccchhhhhhccCccchhhHHHHHHHHHH
Confidence 3578999999877766 77888999999999732 0111111 1111 1234455556666665666778889999988
Q ss_pred HhcCCCCcEEEeCccCCChHHHHHHHHHHhCCCCHHHHHHHHhhhccccccchHH
Q 003509 342 VSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTITSNDVLLKDSTR 396 (814)
Q Consensus 342 L~d~~~~PVLVHCtAGKDRTGal~aLLl~l~GV~~edIiaDYlLSn~~l~~~~~~ 396 (814)
+.+..++|||+||++||||||++++|++.++|++.+++++||+++|.+.......
T Consensus 131 ~~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~~ 185 (249)
T COG2365 131 LADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERRG 185 (249)
T ss_pred HhhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhHH
Confidence 8766679999999999999999999999999999999999999999998666553
No 32
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=99.43 E-value=1.1e-13 Score=145.77 Aligned_cols=56 Identities=30% Similarity=0.547 Sum_probs=52.1
Q ss_pred CcccEEEEEcCchhHHHHHhhhcCCCCcEEEEeCCCcccCCC-CCcccHHHHHhhhh
Q 003509 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTS-HPVSSYLNSLCFLS 809 (814)
Q Consensus 754 ~~vDLVIvLGGDGTILrAArlf~~s~~PILGINlGrLGFLTe-~~~dei~eaLe~L~ 809 (814)
+++|+||+||||||||+|+|++...++||+|||+|+|||||+ ++++++.+.|+++.
T Consensus 24 ~~~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN~G~lGFL~~~~~~~e~~~~l~~~~ 80 (246)
T PRK04761 24 EEADVIVALGGDGFMLQTLHRYMNSGKPVYGMNRGSVGFLMNEYSEDDLLERIAAAE 80 (246)
T ss_pred ccCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCCCCcccCCCCHHHHHHHHHHhh
Confidence 368999999999999999999999999999999999999996 89999999988764
No 33
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.42 E-value=1.9e-12 Score=121.58 Aligned_cols=114 Identities=9% Similarity=0.180 Sum_probs=85.6
Q ss_pred ceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCC-HHHHHHHHHHHhc-
Q 003509 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPT-MEQVEKFASLVSN- 344 (814)
Q Consensus 267 ~~LYRSGqpT~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps-~e~v~~fleiL~d- 344 (814)
+.||+|+++...+.+.|+++||++||||+++. +. ......|++|+|+|+.+...+. ...+..+.+++..
T Consensus 7 ~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~-~~--------~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~ 77 (139)
T cd00127 7 PGLYLGSYPAASDKELLKKLGITHVLNVAKEV-PN--------ENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDA 77 (139)
T ss_pred CCeEECChhHhcCHHHHHHcCCCEEEEcccCC-CC--------cccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999986 22 1234679999999998776443 3344444444431
Q ss_pred -CCCCcEEEeCccCCChHHHHHHHHH-HhCCCCHHHHHHHHhhhccc
Q 003509 345 -SSKKPLYLHSKEGVWRTYAMVSRWR-QYMARCASQISGQTITSNDV 389 (814)
Q Consensus 345 -~~~~PVLVHCtAGKDRTGal~aLLl-~l~GV~~edIiaDYlLSn~~ 389 (814)
..++||||||.+|.+|||++++.++ ...|++.++|++...--.+.
T Consensus 78 ~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~ 124 (139)
T cd00127 78 REKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPI 124 (139)
T ss_pred HhcCCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCc
Confidence 3468999999999999997755443 35689999998876544443
No 34
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.27 E-value=3.2e-11 Score=126.20 Aligned_cols=106 Identities=15% Similarity=0.133 Sum_probs=88.0
Q ss_pred HhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhc--CCCCcEEEeC
Q 003509 277 EEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN--SSKKPLYLHS 354 (814)
Q Consensus 277 ~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d--~~~~PVLVHC 354 (814)
+..++.|+..||++||.+.... |+ ...++..||+++++|+.|...|+.+.+.+|++++.. ..+++|+|||
T Consensus 106 ~~yl~eLk~~gV~~lVrlcE~~-----Yd---~~~~~~~GI~~~~lpipDg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC 177 (241)
T PTZ00393 106 PLYIKEMKNYNVTDLVRTCERT-----YN---DGEITSAGINVHELIFPDGDAPTVDIVSNWLTIVNNVIKNNRAVAVHC 177 (241)
T ss_pred HHHHHHHHHcCCCEEEECCCCC-----CC---HHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEC
Confidence 5778999999999999997643 22 123678899999999999999999999999988752 3567999999
Q ss_pred ccCCChHHHHHHHHHHhCCCCHHHHHHHHhhhcccc
Q 003509 355 KEGVWRTYAMVSRWRQYMARCASQISGQTITSNDVL 390 (814)
Q Consensus 355 tAGKDRTGal~aLLl~l~GV~~edIiaDYlLSn~~l 390 (814)
.+|.+|||+++++++...|++.++|++......+..
T Consensus 178 ~AGlGRTGtl~AayLI~~GmspeeAI~~VR~~RPgA 213 (241)
T PTZ00393 178 VAGLGRAPVLASIVLIEFGMDPIDAIVFIRDRRKGA 213 (241)
T ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHCCCC
Confidence 999999998888887768999999998777666553
No 35
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.25 E-value=6.2e-11 Score=118.02 Aligned_cols=114 Identities=12% Similarity=0.137 Sum_probs=86.4
Q ss_pred eEEEcCCCCH----hhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHh
Q 003509 268 TFCRGGQVTE----EGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVS 343 (814)
Q Consensus 268 ~LYRSGqpT~----eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~ 343 (814)
+|.-...|++ .+++.|++.||+.||++..+. ++ .+.++..|+++.++|+.+...|+.+.+.+|++++.
T Consensus 17 r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~-----~~---~~~~~~~gi~~~~~p~~D~~~P~~~~i~~~~~~i~ 88 (166)
T PTZ00242 17 KFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPT-----YD---AELLEKNGIEVHDWPFDDGAPPPKAVIDNWLRLLD 88 (166)
T ss_pred EEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCC-----CC---HHHHHHCCCEEEecCCCCCCCCCHHHHHHHHHHHH
Confidence 3444444544 667999999999999996543 11 12456789999999999888899988888887764
Q ss_pred c------CCCCcEEEeCccCCChHHHHHHHHHHhC-CCCHHHHHHHHhhhccc
Q 003509 344 N------SSKKPLYLHSKEGVWRTYAMVSRWRQYM-ARCASQISGQTITSNDV 389 (814)
Q Consensus 344 d------~~~~PVLVHCtAGKDRTGal~aLLl~l~-GV~~edIiaDYlLSn~~ 389 (814)
. ..++||+|||.+|.+|||+++++++... |++.++|++..-...+.
T Consensus 89 ~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~ 141 (166)
T PTZ00242 89 QEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKG 141 (166)
T ss_pred HHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCC
Confidence 3 3478999999999999998877776544 49999998876554443
No 36
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.20 E-value=2.9e-11 Score=113.39 Aligned_cols=113 Identities=15% Similarity=0.301 Sum_probs=83.6
Q ss_pred EEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCC-CCCCCHHHHHHHHHHHhc--C
Q 003509 269 FCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEV-RTAPTMEQVEKFASLVSN--S 345 (814)
Q Consensus 269 LYRSGqpT~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d-~~~ps~e~v~~fleiL~d--~ 345 (814)
||.|+.+... .++|+++||++|||++.+. +.. . .....+++++++|+.| ...+..+.+..+.+++.+ .
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~-~~~-~------~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~ 71 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEEC-PNP-Y------FYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAIS 71 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSS-STS-H------HHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHH
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCC-cCc-h------hcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhc
Confidence 6889988888 9999999999999999875 221 1 2456789999999987 333344555555555542 4
Q ss_pred CCCcEEEeCccCCChHHHHHHHHHH-hCCCCHHHHHHHHhhhcccc
Q 003509 346 SKKPLYLHSKEGVWRTYAMVSRWRQ-YMARCASQISGQTITSNDVL 390 (814)
Q Consensus 346 ~~~PVLVHCtAGKDRTGal~aLLl~-l~GV~~edIiaDYlLSn~~l 390 (814)
.+++|||||.+|.+|||++++.++. ..|++.++|++......+..
T Consensus 72 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~ 117 (133)
T PF00782_consen 72 EGGKVLVHCKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQI 117 (133)
T ss_dssp TTSEEEEEESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTS
T ss_pred ccceeEEEeCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCC
Confidence 5689999999999999977766554 36999999988554444333
No 37
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.20 E-value=3.6e-11 Score=119.82 Aligned_cols=101 Identities=14% Similarity=0.205 Sum_probs=63.2
Q ss_pred HhhHHHHHHcCCcEEEEcCCCcccCcchh-hhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHH----HHHHhcCCCCcEE
Q 003509 277 EEGLKWLMEKGYKTIVDIRAERVKDNFYE-AAIDDAILSGKVELIKIPVEVRTAPTMEQVEKF----ASLVSNSSKKPLY 351 (814)
Q Consensus 277 ~eDla~L~~lGIKTVIDLRsee~E~~~~p-~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~f----leiL~d~~~~PVL 351 (814)
..|+++|++.|+..||.|.+.. |...+- ....+.++..||.++|+||.|...|+.+...++ .+.+ ..++.|+
T Consensus 61 ~~DL~~Lk~~G~~~Vvtl~~~~-EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L--~~g~~V~ 137 (168)
T PF05706_consen 61 QADLERLKDWGAQDVVTLLTDH-ELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAAAWQILEELAARL--ENGRKVL 137 (168)
T ss_dssp HHHHHHHHHTT--EEEE-S-HH-HHHHTT-TTHHHHHHHTT-EEEE----TTS---HHHHHHHHHHHHHHH--HTT--EE
T ss_pred HHHHHHHHHCCCCEEEEeCcHH-HHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHHHHHHHHHHHHHH--HcCCEEE
Confidence 6789999999999999999886 322221 234567889999999999999999987654433 3344 3467899
Q ss_pred EeCccCCChHHHHHHHHHHhCC--CCHHHHH
Q 003509 352 LHSKEGVWRTYAMVSRWRQYMA--RCASQIS 380 (814)
Q Consensus 352 VHCtAGKDRTGal~aLLl~l~G--V~~edIi 380 (814)
+||..|.||||.++++++..+| ++.++||
T Consensus 138 vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 138 VHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp EE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 9999999999998888877655 7888775
No 38
>PRK12361 hypothetical protein; Provisional
Probab=99.15 E-value=3.9e-10 Score=130.46 Aligned_cols=123 Identities=14% Similarity=0.209 Sum_probs=96.3
Q ss_pred ceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhc--
Q 003509 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN-- 344 (814)
Q Consensus 267 ~~LYRSGqpT~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d-- 344 (814)
+.||.|+++++.|++.|++.||++||||+.+. +.... .....|++|+|+|+.|...|+.+++++..+.++.
T Consensus 100 ~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~-~~~~~------~~~~~~i~yl~iPi~D~~~p~~~~l~~a~~~i~~~~ 172 (547)
T PRK12361 100 ENLYLGCRLFPADLEKLKSNKITAILDVTAEF-DGLDW------SLTEEDIDYLNIPILDHSVPTLAQLNQAINWIHRQV 172 (547)
T ss_pred CcEEECCCCCcccHHHHHHcCCCEEEEccccc-ccccc------cccccCceEEEeecCCCCCCcHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999654 11111 1234689999999999888888888887777753
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHh--CCCCHHHHHHHHhhhccccccchHH
Q 003509 345 SSKKPLYLHSKEGVWRTYAMVSRWRQY--MARCASQISGQTITSNDVLLKDSTR 396 (814)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGal~aLLl~l--~GV~~edIiaDYlLSn~~l~~~~~~ 396 (814)
..+++|||||.+|.+|++++++.|+.. .+++.++|++.-....+....+..+
T Consensus 173 ~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q 226 (547)
T PRK12361 173 RANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQ 226 (547)
T ss_pred HCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHH
Confidence 346799999999999999877776654 3699999998877666665555433
No 39
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=98.72 E-value=2.4e-08 Score=106.35 Aligned_cols=107 Identities=21% Similarity=0.141 Sum_probs=76.9
Q ss_pred CCEEEEEecCC--c-hHHHHHHHHHHHHhcCCCeEEEEccchhh-HhhcCCCCccceeeeccCcccccCcccEEEEEcCc
Q 003509 690 PRTVLVLKKPG--P-ALMEEAKEVASFLYHQEKMNILVEPDVHD-IFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD 765 (814)
Q Consensus 690 ~kkVlIV~K~~--~-ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~-~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGD 765 (814)
|++++|+.||. . ...+.+.++.++|.+ +|+++.+...... .... .........+|+||++|||
T Consensus 1 ~~~~~ii~Np~sg~~~~~~~~~~i~~~l~~-~~~~~~~~~t~~~~~~~~------------~~~~~~~~~~d~ivv~GGD 67 (293)
T TIGR00147 1 MAEAPAILNPTAGKSNDNKPLREVIMLLRE-EGMEIHVRVTWEKGDAAR------------YVEEARKFGVDTVIAGGGD 67 (293)
T ss_pred CceEEEEECCCccchhhHHHHHHHHHHHHH-CCCEEEEEEecCcccHHH------------HHHHHHhcCCCEEEEECCC
Confidence 47999999994 4 456778889999987 7887755322111 0000 0001122468999999999
Q ss_pred hhHHHHHhhhcC-CCCcEEE-EeCCCcccCCC-CC-cccHHHHHhhhh
Q 003509 766 GVILHASNLFRG-AVPPVIS-FNLGSLGFLTS-HP-VSSYLNSLCFLS 809 (814)
Q Consensus 766 GTILrAArlf~~-s~~PILG-INlGrLGFLTe-~~-~dei~eaLe~L~ 809 (814)
|||..+++.+.. ...|.|| |+.|+.++|+. +. ++++.++++.|.
T Consensus 68 GTl~~v~~~l~~~~~~~~lgiiP~Gt~N~~a~~l~i~~~~~~~~~~l~ 115 (293)
T TIGR00147 68 GTINEVVNALIQLDDIPALGILPLGTANDFARSLGIPEDLDKAAKLVI 115 (293)
T ss_pred ChHHHHHHHHhcCCCCCcEEEEcCcCHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999998765 4566777 99999999998 66 678888888765
No 40
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=98.72 E-value=4.2e-08 Score=100.84 Aligned_cols=96 Identities=17% Similarity=0.298 Sum_probs=78.5
Q ss_pred HHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhcC-CCCcEEEeCccCC
Q 003509 280 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNS-SKKPLYLHSKEGV 358 (814)
Q Consensus 280 la~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d~-~~~PVLVHCtAGK 358 (814)
+..+++..+++|+-|...- |+ ++.....||..+++|+.|+..|+++.+.+|+++++.. ..+.|.|||++|-
T Consensus 87 ~~~~~~~~v~s~vrln~~~-----yd---~~~f~~~Gi~h~~l~f~Dg~tP~~~~v~~fv~i~e~~~~~g~iaVHCkaGl 158 (225)
T KOG1720|consen 87 IQYFKNNNVTSIVRLNKRL-----YD---AKRFTDAGIDHHDLFFADGSTPTDAIVKEFVKIVENAEKGGKIAVHCKAGL 158 (225)
T ss_pred HHHhhhcccceEEEcCCCC-----CC---hHHhcccCceeeeeecCCCCCCCHHHHHHHHHHHHHHHhcCeEEEEeccCC
Confidence 4566777999999996543 22 2346788999999999999999999999999998532 2489999999999
Q ss_pred ChHHHHHHHHHHh-CCCCHHHHHHHH
Q 003509 359 WRTYAMVSRWRQY-MARCASQISGQT 383 (814)
Q Consensus 359 DRTGal~aLLl~l-~GV~~edIiaDY 383 (814)
||||+++++|+.+ .|++..|+|+-.
T Consensus 159 GRTG~liAc~lmy~~g~ta~eaI~~l 184 (225)
T KOG1720|consen 159 GRTGTLIACYLMYEYGMTAGEAIAWL 184 (225)
T ss_pred CchhHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999888888765 589999998743
No 41
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.32 E-value=1.2e-06 Score=85.90 Aligned_cols=61 Identities=20% Similarity=0.359 Sum_probs=44.7
Q ss_pred hHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCC-CCcEEEeCccCCChHHHHHHHH
Q 003509 308 IDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSS-KKPLYLHSKEGVWRTYAMVSRW 368 (814)
Q Consensus 308 e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d~~-~~PVLVHCtAGKDRTGal~aLL 368 (814)
+...++..|+.|++||+.+...|.++.+++|++++.... +..++|||.+|+|||.++.+++
T Consensus 84 e~~~~~~~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~p~~~~l~fhC~~G~GRTTt~Mv~~ 145 (149)
T PF14566_consen 84 EEELVEGNGLRYYRIPITDHQAPDPEDIDAFINFVKSLPKDTWLHFHCQAGRGRTTTFMVMY 145 (149)
T ss_dssp HHHHHHHTT-EEEEEEE-TTS---HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEEeCCCcCCCCHHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 455678999999999999999999999999999997543 4579999999999999544443
No 42
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.16 E-value=6.8e-06 Score=82.87 Aligned_cols=77 Identities=16% Similarity=0.307 Sum_probs=58.3
Q ss_pred hhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhc--CCCCcEEEeCccCCChHHHHHHHHH-Hh-CCCCHHHHHHHHhhhc
Q 003509 312 ILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN--SSKKPLYLHSKEGVWRTYAMVSRWR-QY-MARCASQISGQTITSN 387 (814)
Q Consensus 312 ~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d--~~~~PVLVHCtAGKDRTGal~aLLl-~l-~GV~~edIiaDYlLSn 387 (814)
.+..|+.++++|+.|...|+.+++.++.++|.+ ..++.|+|||.+|.+|||++++-|+ .+ .+...++++.-+...-
T Consensus 68 ~~~~~~~~~~~~~~D~~~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r 147 (180)
T COG2453 68 EENDGIQVLHLPILDGTVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRR 147 (180)
T ss_pred eccCCceeeeeeecCCCCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcC
Confidence 456799999999999999999988888887753 3455899999999999996655333 33 3467777766565554
Q ss_pred c
Q 003509 388 D 388 (814)
Q Consensus 388 ~ 388 (814)
.
T Consensus 148 ~ 148 (180)
T COG2453 148 P 148 (180)
T ss_pred C
Confidence 4
No 43
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=98.15 E-value=1.3e-05 Score=77.85 Aligned_cols=97 Identities=15% Similarity=0.182 Sum_probs=79.3
Q ss_pred HHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHh----cCCCCcEEEeCc
Q 003509 280 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVS----NSSKKPLYLHSK 355 (814)
Q Consensus 280 la~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~----d~~~~PVLVHCt 355 (814)
++.|+.+|++||+-..... |. ...++..||..+..|..++..|..+.++..++++. +..+.-|.|||-
T Consensus 34 ieELkKygvttvVRVCe~T-----Yd---t~~lek~GI~Vldw~f~dg~ppp~qvv~~w~~l~~~~f~e~p~~cvavhcv 105 (173)
T KOG2836|consen 34 IEELKKYGVTTVVRVCEPT-----YD---TTPLEKEGITVLDWPFDDGAPPPNQVVDDWLSLVKTKFREEPGCCVAVHCV 105 (173)
T ss_pred HHHHHhcCCeEEEEecccc-----cC---CchhhhcCceEeecccccCCCCchHHHHHHHHHHHHHHhhCCCCeEEEEee
Confidence 5678999999999998875 21 11368899999999999988888888888877654 344556999999
Q ss_pred cCCChHHHHHHHHHHhCCCCHHHHHHHHh
Q 003509 356 EGVWRTYAMVSRWRQYMARCASQISGQTI 384 (814)
Q Consensus 356 AGKDRTGal~aLLl~l~GV~~edIiaDYl 384 (814)
||-||+.++++|.+..+|+-.++|++-..
T Consensus 106 aglgrapvlvalalie~gmkyedave~ir 134 (173)
T KOG2836|consen 106 AGLGRAPVLVALALIEAGMKYEDAVEMIR 134 (173)
T ss_pred cccCcchHHHHHHHHHccccHHHHHHHHH
Confidence 99999999999888888999999987543
No 44
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=98.11 E-value=3.5e-06 Score=91.38 Aligned_cols=56 Identities=34% Similarity=0.494 Sum_probs=45.7
Q ss_pred cCcccEEEEEcCchhHHHHHhhhcCCCCcEEEEeC------CCcccCCCCCcccHHHHHhhhh
Q 003509 753 HERVDFVACLGGDGVILHASNLFRGAVPPVISFNL------GSLGFLTSHPVSSYLNSLCFLS 809 (814)
Q Consensus 753 ~~~vDLVIvLGGDGTILrAArlf~~s~~PILGINl------GrLGFLTe~~~dei~eaLe~L~ 809 (814)
...+|+||+.|||||||.||+.+....+||+|||. |+|-..-.++ ++...+|+++-
T Consensus 103 i~waD~VisvGGDGTfL~Aasrv~~~~~PViGvNtDP~~Seg~lcL~~~~~-~n~~~al~k~~ 164 (395)
T KOG4180|consen 103 IRWADMVISVGGDGTFLLAASRVIDDSKPVIGVNTDPTGSEGHLCLPDKYP-SNPAGALCKLT 164 (395)
T ss_pred CchhhEEEEecCccceeehhhhhhccCCceeeecCCCCcCcceEeccccCC-CCcHHHHHHHH
Confidence 46799999999999999999999888999999997 5555444444 77777777653
No 45
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=98.03 E-value=2.1e-05 Score=78.07 Aligned_cols=111 Identities=15% Similarity=0.203 Sum_probs=81.9
Q ss_pred hhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCC-CCCCHHHHHHHHHHHhc--CCCCcEEEeC
Q 003509 278 EGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVR-TAPTMEQVEKFASLVSN--SSKKPLYLHS 354 (814)
Q Consensus 278 eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~-~~ps~e~v~~fleiL~d--~~~~PVLVHC 354 (814)
.+.+.++.+|+.-||.+..+. |- ..+. ..-+..||+++.||..|. ..|+.+.+.+..+++.. ..++-++|||
T Consensus 42 ~~~~~i~ke~v~gvv~~ne~y-E~-~a~s---~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHC 116 (183)
T KOG1719|consen 42 MDVPLIKKENVGGVVTLNEPY-EL-LAPS---NLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHC 116 (183)
T ss_pred ccchHHHhcCCCeEEEeCCch-hh-hhhh---HHHHhccceeEEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEe
Confidence 566789999999999998775 22 1111 135678999999998764 36888888887777753 3467899999
Q ss_pred ccCCChHHHHHHHHHH-hCCCCHHHHHHHHhhhccccccc
Q 003509 355 KEGVWRTYAMVSRWRQ-YMARCASQISGQTITSNDVLLKD 393 (814)
Q Consensus 355 tAGKDRTGal~aLLl~-l~GV~~edIiaDYlLSn~~l~~~ 393 (814)
+||..|+.++++|++. .-+++.++|.+..----++....
T Consensus 117 KAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~ 156 (183)
T KOG1719|consen 117 KAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLR 156 (183)
T ss_pred cCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcCcceeec
Confidence 9999999998888865 35899999877544333443333
No 46
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=97.96 E-value=3.7e-05 Score=82.90 Aligned_cols=118 Identities=12% Similarity=0.190 Sum_probs=83.8
Q ss_pred cceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCH----HHHHHHHHH
Q 003509 266 EVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTM----EQVEKFASL 341 (814)
Q Consensus 266 e~~LYRSGqpT~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~----e~v~~flei 341 (814)
.+.+|-|......+...|+.+||+.|+++.... .... .....+++|.++|+.|....+. +..-.|++.
T Consensus 79 ~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~-~~~~-------~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~ 150 (285)
T KOG1716|consen 79 LPNLYLGSQGVASDPDLLKKLGITHVLNVSSSC-PNPR-------FLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEK 150 (285)
T ss_pred cCCceecCcccccchhhHHHcCCCEEEEecccC-Cccc-------cccccCceEEeccccCCccccHHHHHHHHHHHHHH
Confidence 357889999999999999999999999997764 1110 1223489999999987544332 223345555
Q ss_pred HhcCCCCcEEEeCccCCChHHH-HHHHHHHhCCCCHHHHHHHHhhhcccccc
Q 003509 342 VSNSSKKPLYLHSKEGVWRTYA-MVSRWRQYMARCASQISGQTITSNDVLLK 392 (814)
Q Consensus 342 L~d~~~~PVLVHCtAGKDRTGa-l~aLLl~l~GV~~edIiaDYlLSn~~l~~ 392 (814)
.. ..++.|||||.+|..|+-+ ++|.+....|++.++|++-.-..-+...-
T Consensus 151 a~-~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~P 201 (285)
T KOG1716|consen 151 AR-EKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISP 201 (285)
T ss_pred HH-hCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCC
Confidence 42 4578899999999999994 44555556799999997766554444433
No 47
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=97.85 E-value=2.1e-05 Score=69.65 Aligned_cols=52 Identities=21% Similarity=0.189 Sum_probs=35.4
Q ss_pred EEEeecCCCCCCCH-HHHHHHHHHHhcC-----CCCcEEEeCccCCChHHHHHHHHHH
Q 003509 319 LIKIPVEVRTAPTM-EQVEKFASLVSNS-----SKKPLYLHSKEGVWRTYAMVSRWRQ 370 (814)
Q Consensus 319 yVhIPV~d~~~ps~-e~v~~fleiL~d~-----~~~PVLVHCtAGKDRTGal~aLLl~ 370 (814)
|.+.+..+...|.. +.+..|+..+... .++||+|||.+|++|||++++++..
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~ 62 (105)
T smart00404 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDIL 62 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHH
Confidence 33444445555544 6677777665432 2679999999999999987766655
No 48
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=97.85 E-value=2.1e-05 Score=69.65 Aligned_cols=52 Identities=21% Similarity=0.189 Sum_probs=35.4
Q ss_pred EEEeecCCCCCCCH-HHHHHHHHHHhcC-----CCCcEEEeCccCCChHHHHHHHHHH
Q 003509 319 LIKIPVEVRTAPTM-EQVEKFASLVSNS-----SKKPLYLHSKEGVWRTYAMVSRWRQ 370 (814)
Q Consensus 319 yVhIPV~d~~~ps~-e~v~~fleiL~d~-----~~~PVLVHCtAGKDRTGal~aLLl~ 370 (814)
|.+.+..+...|.. +.+..|+..+... .++||+|||.+|++|||++++++..
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~ 62 (105)
T smart00012 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDIL 62 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHH
Confidence 33444445555544 6677777665432 2679999999999999987766655
No 49
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=97.68 E-value=0.00029 Score=71.10 Aligned_cols=103 Identities=13% Similarity=0.176 Sum_probs=70.7
Q ss_pred ceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCC-HHHHHHHHHHHh--
Q 003509 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPT-MEQVEKFASLVS-- 343 (814)
Q Consensus 267 ~~LYRSGqpT~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps-~e~v~~fleiL~-- 343 (814)
..||.|.-....+...|++.||..|||-..+. ... ...+++|+.+|+.|..... .+.++...+.+.
T Consensus 22 ~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~-pn~----------~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v 90 (198)
T KOG1718|consen 22 PSLFLSNGVAANDKLLLKKRKITCIINATTEV-PNT----------SLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSV 90 (198)
T ss_pred cceeEeccccccCHHHHHhcCceEEEEcccCC-CCc----------cCCCceeEEEEcccCCcchhhhhhhHHHHHHHHH
Confidence 46888865666677789999999999997764 221 2358999999998653221 122333333221
Q ss_pred cCCCCcEEEeCccCCChHHHHHH-HHHHhCCCCHHHHH
Q 003509 344 NSSKKPLYLHSKEGVWRTYAMVS-RWRQYMARCASQIS 380 (814)
Q Consensus 344 d~~~~PVLVHCtAGKDRTGal~a-LLl~l~GV~~edIi 380 (814)
....+..|+||.||..|+..+++ .+..+.+++..||.
T Consensus 91 ~~~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy 128 (198)
T KOG1718|consen 91 IMRGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAY 128 (198)
T ss_pred HhcCCcEEEEEccccchhHHHHHHHHHHHccchHHHHH
Confidence 13567899999999999996654 44457788877774
No 50
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=97.64 E-value=0.00018 Score=76.86 Aligned_cols=107 Identities=14% Similarity=0.199 Sum_probs=72.9
Q ss_pred cceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCH-HHHHHHHHHHhc
Q 003509 266 EVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTM-EQVEKFASLVSN 344 (814)
Q Consensus 266 e~~LYRSGqpT~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~-e~v~~fleiL~d 344 (814)
.+.||-|+.-+...+.-|+++||++|||..+.- -..+ -....+.|..||+.|..--.. .-+.+.+.+|.+
T Consensus 176 lp~LYLg~a~ds~NldvLkk~gI~yviNVTpnl--pn~f-------e~~g~f~YkqipisDh~Sqnls~ffpEAIsfIde 246 (343)
T KOG1717|consen 176 LPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNL--PNNF-------ENNGEFIYKQIPISDHASQNLSQFFPEAISFIDE 246 (343)
T ss_pred ccchhcccccccccHHHHHhcCceEEEecCCCC--cchh-------hcCCceeEEeeeccchhhhhhhhhhHHHHHHHHH
Confidence 457889998888889999999999999997764 1111 234568999999986532221 122334445533
Q ss_pred --CCCCcEEEeCccCCChHHHHH-HHHHHhCCCCHHHHHH
Q 003509 345 --SSKKPLYLHSKEGVWRTYAMV-SRWRQYMARCASQISG 381 (814)
Q Consensus 345 --~~~~PVLVHCtAGKDRTGal~-aLLl~l~GV~~edIia 381 (814)
..+-.|||||-+|..|+-++. +.+.+-+..+.++|.+
T Consensus 247 Arsk~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd 286 (343)
T KOG1717|consen 247 ARSKNCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYD 286 (343)
T ss_pred hhccCCcEEEeeeccccchhHHHHHHHHHHhccchhhHHH
Confidence 345679999999999998544 3333445677777754
No 51
>PRK13057 putative lipid kinase; Reviewed
Probab=97.35 E-value=0.00037 Score=74.72 Aligned_cols=101 Identities=16% Similarity=0.137 Sum_probs=69.8
Q ss_pred EEecCCc-hHHHHHHHHHHHHhcCCCeEEEEccch-hhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHHHHH
Q 003509 695 VLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDV-HDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHAS 772 (814)
Q Consensus 695 IV~K~~~-ea~~~a~eLi~~L~e~~Gi~V~ve~~~-a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTILrAA 772 (814)
|+.||.. .....+.++.++|.+ .|+++.+.... ...... -........|.||+.|||||+=.++
T Consensus 2 ~I~Np~sg~~~~~~~~i~~~l~~-~g~~~~~~~t~~~~~a~~-------------~~~~~~~~~d~iiv~GGDGTv~~v~ 67 (287)
T PRK13057 2 LLVNRHARSGRAALAAARAALEA-AGLELVEPPAEDPDDLSE-------------VIEAYADGVDLVIVGGGDGTLNAAA 67 (287)
T ss_pred EEECCCCCCcchhHHHHHHHHHH-cCCeEEEEecCCHHHHHH-------------HHHHHHcCCCEEEEECchHHHHHHH
Confidence 5677764 323567789999987 78886543221 111000 0011234679999999999999999
Q ss_pred hhhcCCCCcEEEEeCCCcccCCCC--CcccHHHHHhhhh
Q 003509 773 NLFRGAVPPVISFNLGSLGFLTSH--PVSSYLNSLCFLS 809 (814)
Q Consensus 773 rlf~~s~~PILGINlGrLGFLTe~--~~dei~eaLe~L~ 809 (814)
..+...++|+.-|.+|+-.-++-. -+.+++++++.|.
T Consensus 68 ~~l~~~~~~lgiiP~GT~Ndfar~Lg~~~~~~~a~~~i~ 106 (287)
T PRK13057 68 PALVETGLPLGILPLGTANDLARTLGIPLDLEAAARVIA 106 (287)
T ss_pred HHHhcCCCcEEEECCCCccHHHHHcCCCCCHHHHHHHHH
Confidence 998888999999999998777654 3467888887765
No 52
>PRK11914 diacylglycerol kinase; Reviewed
Probab=97.26 E-value=0.0014 Score=70.79 Aligned_cols=108 Identities=19% Similarity=0.148 Sum_probs=71.4
Q ss_pred cCCEEEEEecCCc---hHHHHHHHHHHHHhcCCCeEEEE-ccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcC
Q 003509 689 TPRTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILV-EPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGG 764 (814)
Q Consensus 689 ~~kkVlIV~K~~~---ea~~~a~eLi~~L~e~~Gi~V~v-e~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGG 764 (814)
.|++++||.||.. ...+.+.++.+.|++ .|+++.+ .......... .-.......+|+||++||
T Consensus 7 ~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~-~g~~~~~~~t~~~~~~~~------------~a~~~~~~~~d~vvv~GG 73 (306)
T PRK11914 7 EIGKVTVLTNPLSGHGAAPHAAERAIARLHH-RGVDVVEIVGTDAHDARH------------LVAAALAKGTDALVVVGG 73 (306)
T ss_pred CCceEEEEECCCCCCCcHHHHHHHHHHHHHH-cCCeEEEEEeCCHHHHHH------------HHHHHHhcCCCEEEEECC
Confidence 3589999999985 456778889999987 7877543 1111111100 000111346799999999
Q ss_pred chhHHHHHhhhcCCCCcEEEEeCCCcccCC-CCC--cccHHHHHhhhh
Q 003509 765 DGVILHASNLFRGAVPPVISFNLGSLGFLT-SHP--VSSYLNSLCFLS 809 (814)
Q Consensus 765 DGTILrAArlf~~s~~PILGINlGrLGFLT-e~~--~dei~eaLe~L~ 809 (814)
|||+=.++..+...++|+-=|-.|+-.=++ .+. .++.+++++.|.
T Consensus 74 DGTi~evv~~l~~~~~~lgiiP~GT~NdfAr~lg~~~~~~~~a~~~i~ 121 (306)
T PRK11914 74 DGVISNALQVLAGTDIPLGIIPAGTGNDHAREFGIPTGDPEAAADVIV 121 (306)
T ss_pred chHHHHHhHHhccCCCcEEEEeCCCcchhHHHcCCCCCCHHHHHHHHH
Confidence 999999998888888998778888754333 222 235777776654
No 53
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=96.88 E-value=0.0018 Score=66.71 Aligned_cols=53 Identities=17% Similarity=0.097 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcC----CCCcEEEeCccCCChHHHHHHHHHHh------CCCCHHHHHHHHhh
Q 003509 333 EQVEKFASLVSNS----SKKPLYLHSKEGVWRTYAMVSRWRQY------MARCASQISGQTIT 385 (814)
Q Consensus 333 e~v~~fleiL~d~----~~~PVLVHCtAGKDRTGal~aLLl~l------~GV~~edIiaDYlL 385 (814)
+.+..|++.+... ..+||+|||.+|.+|||+++++...+ ..++..+++.....
T Consensus 148 ~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR~ 210 (231)
T cd00047 148 DSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRS 210 (231)
T ss_pred HHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHHh
Confidence 5666777666433 36799999999999999877765431 13666666655443
No 54
>PRK00861 putative lipid kinase; Reviewed
Probab=96.87 E-value=0.0035 Score=67.60 Aligned_cols=105 Identities=12% Similarity=0.182 Sum_probs=66.2
Q ss_pred CCEEEEEecCCc---hHHHHHHHHHHHHhcCCCeEEEEccch--hhHhhcCCCCccceeeeccCcccccCcccEEEEEcC
Q 003509 690 PRTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILVEPDV--HDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGG 764 (814)
Q Consensus 690 ~kkVlIV~K~~~---ea~~~a~eLi~~L~e~~Gi~V~ve~~~--a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGG 764 (814)
+++++||.||.. .....+.++...|.+...++++..... +..+. .+...+..|+||++||
T Consensus 2 ~~~~~iI~NP~sG~~~~~~~~~~i~~~l~~~~~~~~~~t~~~~~a~~~a---------------~~~~~~~~d~vv~~GG 66 (300)
T PRK00861 2 TRSACLIFNPVAGQGNPEVDLALIRAILEPEMDLDIYLTTPEIGADQLA---------------QEAIERGAELIIASGG 66 (300)
T ss_pred CceEEEEECCCCCCCchhhhHHHHHHHHHhcCceEEEEccCCCCHHHHH---------------HHHHhcCCCEEEEECC
Confidence 578999999985 344556778888765112333321110 11110 0111346799999999
Q ss_pred chhHHHHHhhhcCCCCcEEEEeCCCcccCC-CCC-cccHHHHHhhhh
Q 003509 765 DGVILHASNLFRGAVPPVISFNLGSLGFLT-SHP-VSSYLNSLCFLS 809 (814)
Q Consensus 765 DGTILrAArlf~~s~~PILGINlGrLGFLT-e~~-~dei~eaLe~L~ 809 (814)
||||=.++..+...++|+-=|-.|+-.=++ .+. +.++.++++.|.
T Consensus 67 DGTl~evv~~l~~~~~~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~ 113 (300)
T PRK00861 67 DGTLSAVAGALIGTDIPLGIIPRGTANAFAAALGIPDTIEEACRTIL 113 (300)
T ss_pred hHHHHHHHHHHhcCCCcEEEEcCCchhHHHHHcCCCCCHHHHHHHHH
Confidence 999999999998888887778888743222 222 346777777664
No 55
>PRK13054 lipid kinase; Reviewed
Probab=96.64 E-value=0.0044 Score=66.98 Aligned_cols=105 Identities=20% Similarity=0.146 Sum_probs=65.6
Q ss_pred cCCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccch----hhHhhcCCCCccceeeeccCcccccCcccEEEEEcC
Q 003509 689 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDV----HDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGG 764 (814)
Q Consensus 689 ~~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~----a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGG 764 (814)
+|+++.||.|+.......+.++...|.+ .|+++.+.... +..+. ........|.||++||
T Consensus 2 ~~~~~~~i~N~~~~~~~~~~~~~~~l~~-~g~~~~v~~t~~~~~a~~~a---------------~~~~~~~~d~vvv~GG 65 (300)
T PRK13054 2 TFPKSLLILNGKSAGNEELREAVGLLRE-EGHTLHVRVTWEKGDAARYV---------------EEALALGVATVIAGGG 65 (300)
T ss_pred CCceEEEEECCCccchHHHHHHHHHHHH-cCCEEEEEEecCCCcHHHHH---------------HHHHHcCCCEEEEECC
Confidence 5789999999876445667778888877 78775432211 11110 0111346799999999
Q ss_pred chhHHHHHhhhcCC----CCcEEEEeCCCcccCC-CCC-cccHHHHHhhhh
Q 003509 765 DGVILHASNLFRGA----VPPVISFNLGSLGFLT-SHP-VSSYLNSLCFLS 809 (814)
Q Consensus 765 DGTILrAArlf~~s----~~PILGINlGrLGFLT-e~~-~dei~eaLe~L~ 809 (814)
|||+=.++.-+... .+|+-=|-.|+-.=++ .+. +.+..++++.|.
T Consensus 66 DGTl~evv~~l~~~~~~~~~~lgiiP~GTgNdfar~lgi~~~~~~a~~~i~ 116 (300)
T PRK13054 66 DGTINEVATALAQLEGDARPALGILPLGTANDFATAAGIPLEPDKALKLAI 116 (300)
T ss_pred ccHHHHHHHHHHhhccCCCCcEEEEeCCcHhHHHHhcCCCCCHHHHHHHHH
Confidence 99999999877632 4676667788632221 111 345677776653
No 56
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=96.62 E-value=0.0042 Score=65.30 Aligned_cols=54 Identities=19% Similarity=0.138 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHhcC---CCCcEEEeCccCCChHHHHHHHHHHh------CCCCHHHHHHHHh
Q 003509 331 TMEQVEKFASLVSNS---SKKPLYLHSKEGVWRTYAMVSRWRQY------MARCASQISGQTI 384 (814)
Q Consensus 331 s~e~v~~fleiL~d~---~~~PVLVHCtAGKDRTGal~aLLl~l------~GV~~edIiaDYl 384 (814)
+.+.+.+|+..+... ..+||+|||.+|.+|||+++++...+ ..++..+++....
T Consensus 174 ~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR 236 (258)
T smart00194 174 SPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELR 236 (258)
T ss_pred CHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345666666666432 16799999999999999777665331 1366666665544
No 57
>PLN02727 NAD kinase
Probab=96.57 E-value=0.0039 Score=76.23 Aligned_cols=173 Identities=9% Similarity=-0.028 Sum_probs=108.8
Q ss_pred hcccccccccccccccccCCCCCcccc-ccccccccchhhhhcccC-------Ccc---------cccccccCCccccCC
Q 003509 424 QTKNGVFGFGLSVDMDKRNQSNGAYKG-LSSVEGVESAKEVDTAVG-------SLG---------TTFSKETDPFKAQVP 486 (814)
Q Consensus 424 ~~~~d~~le~ar~nl~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~---------~~~~~~~~~~~~~~~ 486 (814)
...++.+.++.+.++...|..++++.+ +++..++..+-...-+-+ ... +.|.|. |.-.|
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 484 (986)
T PLN02727 409 GESCSIKDETGRSNLEAYNSLPSDQSTQQGEMVGTGVESQSNFNMESDPLKAQVPPCDVFSKKEMSKFFRS----KKIYP 484 (986)
T ss_pred ccccccccccccccccccccccccccccccccccccccccceeeeecCcccccCCCcccccHHHHHHHHhh----cccCC
Confidence 456778899999999999999999987 777766544322111110 011 112222 22233
Q ss_pred CC------cccchhHhhhhhhcccCC---------CCccccccccccccCCccccCCC-CccccccccccccccCCCCCC
Q 003509 487 PS------NFVSKKEMSRFFRSKTTS---------PPRYFNYQSKRMDVLPSEIVSSG-PVSGVAETRYSQWSLSGNNLS 550 (814)
Q Consensus 487 ~~------~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 550 (814)
+. ..|.|- -+++.+.+. |.+-+---+++...+-+++.+.+ +.+++++.++|||++++++++
T Consensus 485 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~e~~~sng~~s~kn~s~d~qss~~~~~k~sNGss~~s~~s 561 (986)
T PLN02727 485 PTYLNYRRKGFEKL---PVPQFTGVTQGSKIDDTDSISRLVETGRSNGLVSEKNSSPKYQSSEFDNGKSSNGSSFASDGS 561 (986)
T ss_pred cccccchhcccccC---CccccccccchhhccCccchhhhhhccCCCccccccccCccccchhhccccCCCCccccccCc
Confidence 32 222221 111111111 10100000111122225667777 888999999999999999999
Q ss_pred CCCCCCCCCCCcccCCCCccccCCcccccccCCCcccccccccccccccccccccccccc
Q 003509 551 PNHQNLPAGSEKSSDNNGYVSAGCSTNGFDRGDRSSMTEANLLTSVTKNLDEQVISSSVR 610 (814)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (814)
++.|++...+.+++||+++++|++..|.... ++.++.+ +++|.+.++.+++..
T Consensus 562 ~s~~Ss~~~~~~~~ng~~stsv~~nl~~~v~-----s~s~res--~s~Ng~a~vgssd~~ 614 (986)
T PLN02727 562 LSVASSITNGNPSNNGASSSTVSDNLERSVA-----SVSVRES--QRSNGKASLGSSDDE 614 (986)
T ss_pred ccccccccCCccccCCCccccccCCCccccc-----ccccccc--cccCCccccccccCc
Confidence 9999999999999999999999988887766 3444444 788999988887765
No 58
>PRK13059 putative lipid kinase; Reviewed
Probab=96.45 E-value=0.0097 Score=64.36 Aligned_cols=106 Identities=13% Similarity=0.171 Sum_probs=66.6
Q ss_pred CCEEEEEecCCc---hHHHHHHHHHHHHhcCCCeEEEE-ccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCc
Q 003509 690 PRTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILV-EPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD 765 (814)
Q Consensus 690 ~kkVlIV~K~~~---ea~~~a~eLi~~L~e~~Gi~V~v-e~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGD 765 (814)
|+++.||.||.. ...+.+.++.++|.+ .|+++.+ ......... ...+...+..|.||++|||
T Consensus 1 ~~~~~~I~NP~aG~g~~~~~~~~i~~~l~~-~g~~~~~~~~~~~~~~~-------------~~~~~~~~~~d~vi~~GGD 66 (295)
T PRK13059 1 MKKVKFIYNPYSGENAIISELDKVIRIHQE-KGYLVVPYRISLEYDLK-------------NAFKDIDESYKYILIAGGD 66 (295)
T ss_pred CcEEEEEECCcccchhHHHHHHHHHHHHHH-CCcEEEEEEccCcchHH-------------HHHHHhhcCCCEEEEECCc
Confidence 468999999985 345667888899987 7877643 211111000 0011123467999999999
Q ss_pred hhHHHHHhhhc--CCCCcEEEEeCCCcccCCC-CC-cccHHHHHhhhh
Q 003509 766 GVILHASNLFR--GAVPPVISFNLGSLGFLTS-HP-VSSYLNSLCFLS 809 (814)
Q Consensus 766 GTILrAArlf~--~s~~PILGINlGrLGFLTe-~~-~dei~eaLe~L~ 809 (814)
||+=.++.-+. ...+|+-=|-+|+-.-++- +. +.+..++++.|.
T Consensus 67 GTv~evv~gl~~~~~~~~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~ 114 (295)
T PRK13059 67 GTVDNVVNAMKKLNIDLPIGILPVGTANDFAKFLGMPTDIGEACEQIL 114 (295)
T ss_pred cHHHHHHHHHHhcCCCCcEEEECCCCHhHHHHHhCCCCCHHHHHHHHH
Confidence 99988888776 3457766678887433221 11 346777777654
No 59
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.42 E-value=0.0023 Score=68.64 Aligned_cols=41 Identities=20% Similarity=0.351 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHHHhcC--CCCcEEEeCccCCChHHHHHHHH
Q 003509 328 TAPTMEQVEKFASLVSNS--SKKPLYLHSKEGVWRTYAMVSRW 368 (814)
Q Consensus 328 ~~ps~e~v~~fleiL~d~--~~~PVLVHCtAGKDRTGal~aLL 368 (814)
..|+...+.+++.-+.+. ..+|++|||.||.||||+++++=
T Consensus 197 ~~p~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD 239 (302)
T COG5599 197 NVPDIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALD 239 (302)
T ss_pred CCcCHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHH
Confidence 345455556666666544 56899999999999999766654
No 60
>PRK13055 putative lipid kinase; Reviewed
Probab=96.41 E-value=0.014 Score=64.34 Aligned_cols=104 Identities=13% Similarity=0.185 Sum_probs=64.8
Q ss_pred CCEEEEEecCCc---hHHHHHHHHHHHHhcCCCeEEEE--cc-c--hhhHhhcCCCCccceeeeccCcccccCcccEEEE
Q 003509 690 PRTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILV--EP-D--VHDIFARIPGFGFVQTFYLQDTSDLHERVDFVAC 761 (814)
Q Consensus 690 ~kkVlIV~K~~~---ea~~~a~eLi~~L~e~~Gi~V~v--e~-~--~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIv 761 (814)
+++++||.||.. .....+.++...|.+ .|+++.+ .. . -+..+.. ......+|.||+
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~-~g~~~~i~~t~~~~~~a~~~~~---------------~~~~~~~d~vvv 65 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNVADILDILEQ-AGYETSAFQTTPEPNSAKNEAK---------------RAAEAGFDLIIA 65 (334)
T ss_pred CceEEEEECCCCCchhHHHHHHHHHHHHHH-cCCeEEEEEeecCCccHHHHHH---------------HHhhcCCCEEEE
Confidence 578999999995 345677889999987 7876433 21 1 1111110 011235799999
Q ss_pred EcCchhHHHHHhhhcC--CCCcEEEEeCCCcccCC-CC--CcccHHHHHhhhh
Q 003509 762 LGGDGVILHASNLFRG--AVPPVISFNLGSLGFLT-SH--PVSSYLNSLCFLS 809 (814)
Q Consensus 762 LGGDGTILrAArlf~~--s~~PILGINlGrLGFLT-e~--~~dei~eaLe~L~ 809 (814)
+|||||+=.++.-+.. ..+|+-=|-+|+-.=++ .+ ..++..++++.|.
T Consensus 66 ~GGDGTl~evvngl~~~~~~~~LgiiP~GTgNdfAr~Lgi~~~~~~~a~~~l~ 118 (334)
T PRK13055 66 AGGDGTINEVVNGIAPLEKRPKMAIIPAGTTNDYARALKIPRDNPVEAAKVIL 118 (334)
T ss_pred ECCCCHHHHHHHHHhhcCCCCcEEEECCCchhHHHHHcCCCCcCHHHHHHHHH
Confidence 9999999989987764 34555556788743222 11 2225666776654
No 61
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=96.39 E-value=0.012 Score=55.76 Aligned_cols=83 Identities=23% Similarity=0.290 Sum_probs=51.4
Q ss_pred EEEEEecCCc--hHHHHHHHHHHHHhcCCCeEEEE--ccc--hhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCc
Q 003509 692 TVLVLKKPGP--ALMEEAKEVASFLYHQEKMNILV--EPD--VHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD 765 (814)
Q Consensus 692 kVlIV~K~~~--ea~~~a~eLi~~L~e~~Gi~V~v--e~~--~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGD 765 (814)
+++|+.||.. .... ++++...|.. .+..+-+ -.. ....+. .........|.||++|||
T Consensus 1 k~~vi~Np~sG~~~~~-~~~v~~~l~~-~~~~~~~~~t~~~~~~~~~~--------------~~~~~~~~~~~ivv~GGD 64 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAK-WKKVEPALRA-AGIDYEVIETESAGHAEALA--------------RILALDDYPDVIVVVGGD 64 (130)
T ss_dssp SEEEEEETTSTTSHHH-HHHHHHHHHH-TTCEEEEEEESSTTHHHHHH--------------HHHHHTTS-SEEEEEESH
T ss_pred CEEEEECCCCCCCchh-HHHHHHHHHH-cCCceEEEEEeccchHHHHH--------------HHHhhccCccEEEEEcCc
Confidence 4788888885 2222 5788888876 4544432 211 011110 011122235999999999
Q ss_pred hhHHHHHhhhcCCCC----cEEEEeCCCc
Q 003509 766 GVILHASNLFRGAVP----PVISFNLGSL 790 (814)
Q Consensus 766 GTILrAArlf~~s~~----PILGINlGrL 790 (814)
||+=.++..+..... |+.=|-+|+-
T Consensus 65 GTl~~vv~~l~~~~~~~~~~l~iiP~GT~ 93 (130)
T PF00781_consen 65 GTLNEVVNGLMGSDREDKPPLGIIPAGTG 93 (130)
T ss_dssp HHHHHHHHHHCTSTSSS--EEEEEE-SSS
T ss_pred cHHHHHHHHHhhcCCCccceEEEecCCCh
Confidence 999999999887665 7777888863
No 62
>PRK13337 putative lipid kinase; Reviewed
Probab=96.23 E-value=0.02 Score=61.99 Aligned_cols=107 Identities=11% Similarity=0.101 Sum_probs=64.0
Q ss_pred CCEEEEEecCCc---hHHHHHHHHHHHHhcCCCeEEEEccc-hhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCc
Q 003509 690 PRTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILVEPD-VHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD 765 (814)
Q Consensus 690 ~kkVlIV~K~~~---ea~~~a~eLi~~L~e~~Gi~V~ve~~-~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGD 765 (814)
|++++||.||.. .....+.++...|.+ .|+++.+... ....... . -.....+..|.||++|||
T Consensus 1 ~~r~~~I~Np~aG~~~~~~~~~~~~~~l~~-~~~~~~~~~t~~~~~a~~---------~---a~~~~~~~~d~vvv~GGD 67 (304)
T PRK13337 1 MKRARIIYNPTSGRELFKKNLPDVLQKLEQ-AGYETSAHATTGPGDATL---------A---AERAVERKFDLVIAAGGD 67 (304)
T ss_pred CceEEEEECCcccchhHHHHHHHHHHHHHH-cCCEEEEEEecCCCCHHH---------H---HHHHHhcCCCEEEEEcCC
Confidence 468999999985 335567788888887 7877543111 0100000 0 000112457999999999
Q ss_pred hhHHHHHhhhcC--CCCcEEEEeCCCcccCCCC-C-cccHHHHHhhhh
Q 003509 766 GVILHASNLFRG--AVPPVISFNLGSLGFLTSH-P-VSSYLNSLCFLS 809 (814)
Q Consensus 766 GTILrAArlf~~--s~~PILGINlGrLGFLTe~-~-~dei~eaLe~L~ 809 (814)
||+=.++..+.. ..+|+-=|-.|+..-++-- . +.++.++++.|.
T Consensus 68 GTl~~vv~gl~~~~~~~~lgiiP~GT~NdfAr~lgi~~~~~~a~~~i~ 115 (304)
T PRK13337 68 GTLNEVVNGIAEKENRPKLGIIPVGTTNDFARALHVPRDIEKAADVII 115 (304)
T ss_pred CHHHHHHHHHhhCCCCCcEEEECCcCHhHHHHHcCCCCCHHHHHHHHH
Confidence 999888886653 3566666677764333311 1 345666666553
No 63
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=95.86 E-value=0.015 Score=63.55 Aligned_cols=22 Identities=9% Similarity=0.137 Sum_probs=18.7
Q ss_pred CCcEEEeCccCCChHHHHHHHH
Q 003509 347 KKPLYLHSKEGVWRTYAMVSRW 368 (814)
Q Consensus 347 ~~PVLVHCtAGKDRTGal~aLL 368 (814)
.+|++|||++|.||||+++++-
T Consensus 221 ~~PIVVHCSaGvGRTGtFcaiD 242 (298)
T PHA02740 221 IAPIIIDCIDGISSSAVFCVFD 242 (298)
T ss_pred CCCEEEECCCCCchhHHHHHHH
Confidence 5799999999999999766543
No 64
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=95.79 E-value=0.013 Score=67.34 Aligned_cols=98 Identities=18% Similarity=0.252 Sum_probs=62.4
Q ss_pred HHHHHHc--CCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHH----HHhcCCCCcEEEe
Q 003509 280 LKWLMEK--GYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFAS----LVSNSSKKPLYLH 353 (814)
Q Consensus 280 la~L~~l--GIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fle----iL~d~~~~PVLVH 353 (814)
+.+|... |=-.|.||+++. .|. ...-.=+...+|..+...|..+.+..|-+ +|......-+.+|
T Consensus 44 ~~fL~s~H~~~y~vyNL~~er----~yd------~~~f~g~V~~~~~~Dh~~P~L~~l~~~c~~~~~WL~~d~~nVvvvH 113 (434)
T KOG2283|consen 44 VLFLDSKHKDHYKVYNLSSER----LYD------PSRFHGRVARFGFDDHNPPPLELLCPFCKSMDNWLSEDPKNVVVVH 113 (434)
T ss_pred HHHHhhccCCceEEEecCccc----cCC------ccccccceeecCCCCCCCCcHHHHHHHHHCHHHHHhcCccceEEEE
Confidence 3455443 445699999742 121 01111245568999999999888876654 4443444568899
Q ss_pred CccCCChHHHHHHHHHHhCC--CCHHHHHHHHhhhc
Q 003509 354 SKEGVWRTYAMVSRWRQYMA--RCASQISGQTITSN 387 (814)
Q Consensus 354 CtAGKDRTGal~aLLl~l~G--V~~edIiaDYlLSn 387 (814)
|++||+|||+|+..++.+.| ...++|+.-|....
T Consensus 114 Ck~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR 149 (434)
T KOG2283|consen 114 CKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKR 149 (434)
T ss_pred ccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhh
Confidence 99999999955433434445 35788887777553
No 65
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=95.76 E-value=0.036 Score=52.78 Aligned_cols=35 Identities=34% Similarity=0.535 Sum_probs=29.1
Q ss_pred cccEEEEEcCchhHHHHHhhhcCCC-----CcEEEEeCCC
Q 003509 755 RVDFVACLGGDGVILHASNLFRGAV-----PPVISFNLGS 789 (814)
Q Consensus 755 ~vDLVIvLGGDGTILrAArlf~~s~-----~PILGINlGr 789 (814)
..|.||++|||||+=.++..+.... +|+.=|-+|+
T Consensus 49 ~~d~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~GT 88 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLGT 88 (124)
T ss_pred cCCEEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCCC
Confidence 4689999999999999999776544 7887788886
No 66
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=95.65 E-value=0.017 Score=63.09 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=18.9
Q ss_pred CCcEEEeCccCCChHHHHHHHH
Q 003509 347 KKPLYLHSKEGVWRTYAMVSRW 368 (814)
Q Consensus 347 ~~PVLVHCtAGKDRTGal~aLL 368 (814)
.+||+|||.+|.||||+++++-
T Consensus 229 ~~PIvVHCsaGvGRTGtF~aid 250 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCAID 250 (303)
T ss_pred CCCeEEECCCCCchhHHHHHHH
Confidence 4799999999999999776654
No 67
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=95.61 E-value=0.067 Score=62.36 Aligned_cols=47 Identities=21% Similarity=0.208 Sum_probs=34.0
Q ss_pred EEEeCccCCChHHHHHHHHHHh-CC-CCHHHHHHHHhhhccc-cccchHH
Q 003509 350 LYLHSKEGVWRTYAMVSRWRQY-MA-RCASQISGQTITSNDV-LLKDSTR 396 (814)
Q Consensus 350 VLVHCtAGKDRTGal~aLLl~l-~G-V~~edIiaDYlLSn~~-l~~~~~~ 396 (814)
.+|||+||.||||+++++.... .+ ++.++|+.+...+-+. .-...++
T Consensus 469 PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR~qRng~MVQt~eQ 518 (535)
T PRK15375 469 PMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRNSRNNRMLEDASQ 518 (535)
T ss_pred ceEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHHhcCCccccccHHH
Confidence 3799999999999888776542 22 6888998888777665 4444333
No 68
>PRK12361 hypothetical protein; Provisional
Probab=95.60 E-value=0.036 Score=64.97 Aligned_cols=103 Identities=14% Similarity=0.152 Sum_probs=67.1
Q ss_pred CCEEEEEecCCc---hHHHHHHHHHHHHhcCCCeEEEEccch----hhHhhcCCCCccceeeeccCcccccCcccEEEEE
Q 003509 690 PRTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILVEPDV----HDIFARIPGFGFVQTFYLQDTSDLHERVDFVACL 762 (814)
Q Consensus 690 ~kkVlIV~K~~~---ea~~~a~eLi~~L~e~~Gi~V~ve~~~----a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvL 762 (814)
++++.||.||.. ...+.+.++.+.|.+ ++++.+.... +..+. .+...+..|.||++
T Consensus 242 ~~~~~iI~NP~SG~g~~~~~~~~i~~~L~~--~~~~~v~~t~~~~~a~~la---------------~~~~~~~~d~Viv~ 304 (547)
T PRK12361 242 HKRAWLIANPVSGGGKWQEYGEQIQRELKA--YFDLTVKLTTPEISAEALA---------------KQARKAGADIVIAC 304 (547)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHhc--CCceEEEECCCCccHHHHH---------------HHHHhcCCCEEEEE
Confidence 568999999985 356677888888876 3444321110 11111 00112457999999
Q ss_pred cCchhHHHHHhhhcCCCCcEEEEeCCCcccCCCC----Cc--ccHHHHHhhhh
Q 003509 763 GGDGVILHASNLFRGAVPPVISFNLGSLGFLTSH----PV--SSYLNSLCFLS 809 (814)
Q Consensus 763 GGDGTILrAArlf~~s~~PILGINlGrLGFLTe~----~~--dei~eaLe~L~ 809 (814)
|||||+=.++..+.+.++|+-=|-+|+-.=++-. .. .+..++++.|.
T Consensus 305 GGDGTl~ev~~~l~~~~~~lgiiP~GTgNdfAr~L~gi~~~~~~~~~a~~~i~ 357 (547)
T PRK12361 305 GGDGTVTEVASELVNTDITLGIIPLGTANALSHALFGLGSKLIPVEQACDNII 357 (547)
T ss_pred CCCcHHHHHHHHHhcCCCCEEEecCCchhHHHHHhcCCCCCCccHHHHHHHHH
Confidence 9999999999988888888777788886643331 11 36777777654
No 69
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=95.60 E-value=0.027 Score=61.63 Aligned_cols=109 Identities=17% Similarity=0.222 Sum_probs=68.2
Q ss_pred cCCEEEEEecCCc---hHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCc
Q 003509 689 TPRTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD 765 (814)
Q Consensus 689 ~~kkVlIV~K~~~---ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGD 765 (814)
+++++.++.||.. .....++++.+.|++ .|.++.+-..... +. ..+ .-.+-.....|.||+.|||
T Consensus 1 ~~~~~~~i~Np~sG~~~~~~~~~~~~~~l~~-~g~~~~~~~t~~~--g~-----a~~----~a~~a~~~~~D~via~GGD 68 (301)
T COG1597 1 RMKKALLIYNPTSGKGKAKKLLREVEELLEE-AGHELSVRVTEEA--GD-----AIE----IAREAAVEGYDTVIAAGGD 68 (301)
T ss_pred CCceEEEEEcccccccchhhHHHHHHHHHHh-cCCeEEEEEeecC--cc-----HHH----HHHHHHhcCCCEEEEecCc
Confidence 3678999999885 467778899999987 6766644221111 00 000 0001112379999999999
Q ss_pred hhHHHHHhhhcCCCCcEEEE-eCCCccc---CCCCCcccHHHHHhhhh
Q 003509 766 GVILHASNLFRGAVPPVISF-NLGSLGF---LTSHPVSSYLNSLCFLS 809 (814)
Q Consensus 766 GTILrAArlf~~s~~PILGI-NlGrLGF---LTe~~~dei~eaLe~L~ 809 (814)
||+=.++.-+...+.|.||| -+|+.-= -..+..+++.++++.|.
T Consensus 69 GTv~evingl~~~~~~~LgilP~GT~NdfAr~Lgip~~~~~~Al~~i~ 116 (301)
T COG1597 69 GTVNEVANGLAGTDDPPLGILPGGTANDFARALGIPLDDIEAALELIK 116 (301)
T ss_pred chHHHHHHHHhcCCCCceEEecCCchHHHHHHcCCCchhHHHHHHHHH
Confidence 99999999888776663554 5665322 22344445777776654
No 70
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=95.39 E-value=0.046 Score=63.60 Aligned_cols=111 Identities=17% Similarity=0.177 Sum_probs=68.0
Q ss_pred hcccccCCEEEEEecCCc---hHHHHHH-HHHHHHhcCCCeEEEEccch----hhHhhcCCCCccceeeeccCcccccCc
Q 003509 684 LMWKTTPRTVLVLKKPGP---ALMEEAK-EVASFLYHQEKMNILVEPDV----HDIFARIPGFGFVQTFYLQDTSDLHER 755 (814)
Q Consensus 684 l~w~~~~kkVlIV~K~~~---ea~~~a~-eLi~~L~e~~Gi~V~ve~~~----a~~l~~~p~~~~v~~~~~~~~~~l~~~ 755 (814)
|.+...||+++||.||.. .....+. ++...|.+ .|+++.+.... +..+.. .. ....
T Consensus 105 ~~~~~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~-~gi~~~v~~T~~~ghA~~la~-------------~~--~~~~ 168 (481)
T PLN02958 105 LDSLGRPKRLLVFVNPFGGKKSASKIFFDVVKPLLED-ADIQLTIQETKYQLHAKEVVR-------------TM--DLSK 168 (481)
T ss_pred HhhccCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHH-cCCeEEEEeccCccHHHHHHH-------------Hh--hhcC
Confidence 445567899999999984 4555554 56668876 78775442211 111110 00 1245
Q ss_pred ccEEEEEcCchhHHHHHhhhcCC-------CCcEEEEeCCCcc-cCCCC-----CcccHHHHHhhhhc
Q 003509 756 VDFVACLGGDGVILHASNLFRGA-------VPPVISFNLGSLG-FLTSH-----PVSSYLNSLCFLSL 810 (814)
Q Consensus 756 vDLVIvLGGDGTILrAArlf~~s-------~~PILGINlGrLG-FLTe~-----~~dei~eaLe~L~~ 810 (814)
.|.||++||||||=.+++-+... .+|+-=|-.|+=. |-..+ .+.+..+++..|+.
T Consensus 169 ~D~VV~vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfArsL~~~~gip~~~~~A~~~I~~ 236 (481)
T PLN02958 169 YDGIVCVSGDGILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAKSLLDSVGEPCSATNAVLAIIR 236 (481)
T ss_pred CCEEEEEcCCCHHHHHHHHHhhCccccccccCceEEecCcCcchhhhhhccccCCCcCHHHHHHHHHc
Confidence 79999999999988888866533 5777667888622 22221 24466777766654
No 71
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=95.30 E-value=0.019 Score=62.97 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=18.6
Q ss_pred CcEEEeCccCCChHHHHHHHH
Q 003509 348 KPLYLHSKEGVWRTYAMVSRW 368 (814)
Q Consensus 348 ~PVLVHCtAGKDRTGal~aLL 368 (814)
+|++|||.+|.||||+++++-
T Consensus 230 ~PIvVHCsaGvGRtGtfcaid 250 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVD 250 (312)
T ss_pred CCEEEEecCCCcchhHHHHHH
Confidence 699999999999999777654
No 72
>PLN02160 thiosulfate sulfurtransferase
Probab=95.21 E-value=0.088 Score=51.08 Aligned_cols=87 Identities=16% Similarity=0.253 Sum_probs=52.2
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCC----CCCCHHHHHHHHHHHhcCCCCcE
Q 003509 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVR----TAPTMEQVEKFASLVSNSSKKPL 350 (814)
Q Consensus 275 pT~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~----~~ps~e~v~~fleiL~d~~~~PV 350 (814)
++++++..+.+.+ ..|||.|+.. +-. .-...|...+++|.... ...+.+....+.+.+ ..++||
T Consensus 17 i~~~e~~~~~~~~-~~lIDVR~~~-E~~--------~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~--~~~~~I 84 (136)
T PLN02160 17 VDVSQAKTLLQSG-HQYLDVRTQD-EFR--------RGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLL--NPADDI 84 (136)
T ss_pred eCHHHHHHHHhCC-CEEEECCCHH-HHh--------cCCCCCcceecccchhcCcccccCCHHHHHHHHhcc--CCCCcE
Confidence 5778887777667 4799999986 211 11223434567786321 111233333333332 346799
Q ss_pred EEeCccCCChHHHHHHHHHHhCCCC
Q 003509 351 YLHSKEGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 351 LVHCtAGKDRTGal~aLLl~l~GV~ 375 (814)
++||..|. |+..++..+.. .|..
T Consensus 85 ivyC~sG~-RS~~Aa~~L~~-~G~~ 107 (136)
T PLN02160 85 LVGCQSGA-RSLKATTELVA-AGYK 107 (136)
T ss_pred EEECCCcH-HHHHHHHHHHH-cCCC
Confidence 99999998 99977665544 4654
No 73
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=95.13 E-value=0.066 Score=57.80 Aligned_cols=102 Identities=19% Similarity=0.182 Sum_probs=60.5
Q ss_pred EEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccch----hhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchh
Q 003509 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDV----HDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV 767 (814)
Q Consensus 692 kVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~----a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGT 767 (814)
|+++|.|+.......+.++++.|.+ .|+++.+.... +..+. .+......|.||++|||||
T Consensus 1 ~~~~I~N~~~~~~~~~~~~~~~l~~-~g~~~~v~~t~~~~~a~~~a---------------~~~~~~~~d~vv~~GGDGT 64 (293)
T TIGR03702 1 KALLILNGKQADNEDVREAVGDLRD-EGIQLHVRVTWEKGDAQRYV---------------AEALALGVSTVIAGGGDGT 64 (293)
T ss_pred CEEEEEeCCccchhHHHHHHHHHHH-CCCeEEEEEecCCCCHHHHH---------------HHHHHcCCCEEEEEcCChH
Confidence 4677888765333456677888877 78775432110 11111 0011245799999999999
Q ss_pred HHHHHhhhcCC----CCcEEEEeCCCcccC-CCCC-cccHHHHHhhhh
Q 003509 768 ILHASNLFRGA----VPPVISFNLGSLGFL-TSHP-VSSYLNSLCFLS 809 (814)
Q Consensus 768 ILrAArlf~~s----~~PILGINlGrLGFL-Te~~-~dei~eaLe~L~ 809 (814)
|=.++.-+... .+|+-=|-+|+-.=+ -.+. +.+..++++.|.
T Consensus 65 i~ev~ngl~~~~~~~~~~lgiiP~GTgNdfAr~l~ip~~~~~a~~~i~ 112 (293)
T TIGR03702 65 LREVATALAQIRDDAAPALGLLPLGTANDFATAAGIPLEPAKALKLAL 112 (293)
T ss_pred HHHHHHHHHhhCCCCCCcEEEEcCCchhHHHHhcCCCCCHHHHHHHHH
Confidence 98888877532 345665678873322 2222 346777777654
No 74
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=94.86 E-value=0.047 Score=60.32 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=18.5
Q ss_pred CcEEEeCccCCChHHHHHHHH
Q 003509 348 KPLYLHSKEGVWRTYAMVSRW 368 (814)
Q Consensus 348 ~PVLVHCtAGKDRTGal~aLL 368 (814)
+|++|||.+|.||||+++++-
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid 268 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAID 268 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHH
Confidence 799999999999999777654
No 75
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=94.82 E-value=0.03 Score=56.73 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHh---cCCCCcEEEeCccCCChHHHHHHHHHH
Q 003509 332 MEQVEKFASLVS---NSSKKPLYLHSKEGVWRTYAMVSRWRQ 370 (814)
Q Consensus 332 ~e~v~~fleiL~---d~~~~PVLVHCtAGKDRTGal~aLLl~ 370 (814)
.+.+-.|++.+. +..+.|++|||.+|.+|||+++++...
T Consensus 152 ~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~ 193 (235)
T PF00102_consen 152 PESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDIL 193 (235)
T ss_dssp SHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHH
T ss_pred cchhhhhhhhccccccCCccceEeecccccccccccccchhh
Confidence 344445554443 235689999999999999977766544
No 76
>PHA02738 hypothetical protein; Provisional
Probab=94.73 E-value=0.037 Score=61.02 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=18.5
Q ss_pred CCcEEEeCccCCChHHHHHHHH
Q 003509 347 KKPLYLHSKEGVWRTYAMVSRW 368 (814)
Q Consensus 347 ~~PVLVHCtAGKDRTGal~aLL 368 (814)
.+||+|||.+|.||||+++++-
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaid 248 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVD 248 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHH
Confidence 3699999999999999766544
No 77
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=94.43 E-value=0.47 Score=47.85 Aligned_cols=96 Identities=16% Similarity=0.127 Sum_probs=55.1
Q ss_pred HHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEE----EEeecCCCCCCCHHHHHHHHHHHhc-CCCCcEEEeCcc
Q 003509 282 WLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVEL----IKIPVEVRTAPTMEQVEKFASLVSN-SSKKPLYLHSKE 356 (814)
Q Consensus 282 ~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~y----VhIPV~d~~~ps~e~v~~fleiL~d-~~~~PVLVHCtA 356 (814)
+....|-+.++.|+... ..-..+.. ......+.. +..|=..+..|.++.++.+++++.. ....|+||||.+
T Consensus 27 ~~~rh~~t~mlsl~a~~-t~~~~pa~---~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~apllIHC~a 102 (172)
T COG5350 27 TAARHGPTHMLSLLAKG-TYFHRPAV---IAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRFAPLLIHCYA 102 (172)
T ss_pred HHhhcCCceEEEeeccc-ccccCccc---cchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccccceeeeecc
Confidence 33445899999999874 11111211 011111222 2222222356778999999999853 235799999999
Q ss_pred CCChHHHHHHHHHH--hCCCCHHHHHH
Q 003509 357 GVWRTYAMVSRWRQ--YMARCASQISG 381 (814)
Q Consensus 357 GKDRTGal~aLLl~--l~GV~~edIia 381 (814)
|..|+.++++...+ +-..+..+..+
T Consensus 103 GISRStA~A~i~a~ala~~~de~ela~ 129 (172)
T COG5350 103 GISRSTAAALIAALALAPDMDETELAE 129 (172)
T ss_pred ccccchHHHHHHHHhhccccChHHHHH
Confidence 99999966555322 12355444443
No 78
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=94.34 E-value=0.18 Score=45.25 Aligned_cols=86 Identities=14% Similarity=0.044 Sum_probs=46.6
Q ss_pred CCHhhHHHHHHcCC-cEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 003509 275 VTEEGLKWLMEKGY-KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 353 (814)
Q Consensus 275 pT~eDla~L~~lGI-KTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d~~~~PVLVH 353 (814)
++++++..+.+.|= -+|||.|++. + +. .....| -+++|+......-.+........+ ..++||++|
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~-e---~~-----~ghi~g--a~~ip~~~~~~~~~~~~~~~~~~~--~~~~~ivv~ 67 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNES-D---YE-----RWKIDG--ENNTPYFDPYFDFLEIEEDILDQL--PDDQEVTVI 67 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHH-H---Hh-----hcccCC--CcccccccchHHHHHhhHHHHhhC--CCCCeEEEE
Confidence 35667776655542 4799999976 2 11 011223 245666422100000012223333 356799999
Q ss_pred CccCCChHHHHHHHHHHhCCCC
Q 003509 354 SKEGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 354 CtAGKDRTGal~aLLl~l~GV~ 375 (814)
|..|. |+..++..+.. +|.+
T Consensus 68 C~~G~-rs~~aa~~L~~-~G~~ 87 (100)
T cd01523 68 CAKEG-SSQFVAELLAE-RGYD 87 (100)
T ss_pred cCCCC-cHHHHHHHHHH-cCce
Confidence 99998 88766665544 5764
No 79
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=94.02 E-value=0.23 Score=44.78 Aligned_cols=85 Identities=9% Similarity=0.012 Sum_probs=47.5
Q ss_pred CCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 003509 274 QVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 353 (814)
Q Consensus 274 qpT~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d~~~~PVLVH 353 (814)
.++++++..+.+.+=-+|||.|++. |- . .....| -+++|+..... ....+.+ +.....++||+||
T Consensus 3 ~is~~~l~~~~~~~~~~iiDvR~~~-e~---~-----~ghi~g--A~~ip~~~~~~-~~~~~~~---~~~~~~~~~ivvy 67 (101)
T cd01518 3 YLSPAEWNELLEDPEVVLLDVRNDY-EY---D-----IGHFKG--AVNPDVDTFRE-FPFWLDE---NLDLLKGKKVLMY 67 (101)
T ss_pred cCCHHHHHHHHcCCCEEEEEcCChh-hh---h-----cCEecc--ccCCCcccHhH-hHHHHHh---hhhhcCCCEEEEE
Confidence 4677787776655445899999875 21 1 011223 35666642110 0111222 1112456799999
Q ss_pred CccCCChHHHHHHHHHHhCCCC
Q 003509 354 SKEGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 354 CtAGKDRTGal~aLLl~l~GV~ 375 (814)
|..|. |+...+..+. .+|..
T Consensus 68 C~~G~-rs~~a~~~L~-~~G~~ 87 (101)
T cd01518 68 CTGGI-RCEKASAYLK-ERGFK 87 (101)
T ss_pred CCCch-hHHHHHHHHH-HhCCc
Confidence 99998 9986655443 35654
No 80
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=93.99 E-value=0.57 Score=56.27 Aligned_cols=32 Identities=16% Similarity=0.043 Sum_probs=21.9
Q ss_pred ceEEEcCC-CCH---hh-HHHHHHcCCcEEEEcCCCc
Q 003509 267 VTFCRGGQ-VTE---EG-LKWLMEKGYKTIVDIRAER 298 (814)
Q Consensus 267 ~~LYRSGq-pT~---eD-la~L~~lGIKTVIDLRsee 298 (814)
.-.|...| |-+ .+ ++.+=+.|...||.|.+..
T Consensus 802 ~paYIAtQgPl~stiA~FWQmvWe~G~~vIV~Lt~l~ 838 (1004)
T KOG0793|consen 802 NPAYIATQGPLPSTIADFWQMVWESGCVVIVMLTPLA 838 (1004)
T ss_pred ccceeeccCCCchHHHHHHHHHHHcCcEEEEEecChh
Confidence 35677776 323 33 4455577999999998876
No 81
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=93.88 E-value=0.079 Score=65.63 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhc---CCCCcEEEeCccCCChHHHHH
Q 003509 332 MEQVEKFASLVSN---SSKKPLYLHSKEGVWRTYAMV 365 (814)
Q Consensus 332 ~e~v~~fleiL~d---~~~~PVLVHCtAGKDRTGal~ 365 (814)
...+-.|++.+.. ..+-||++||.||.||||+++
T Consensus 1045 ~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlI 1081 (1144)
T KOG0792|consen 1045 PNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLI 1081 (1144)
T ss_pred hHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehH
Confidence 3444455544432 225599999999999999543
No 82
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=93.49 E-value=0.32 Score=44.52 Aligned_cols=82 Identities=12% Similarity=0.122 Sum_probs=47.9
Q ss_pred CCCCHhhHHHHHHcCC-cEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEE
Q 003509 273 GQVTEEGLKWLMEKGY-KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLY 351 (814)
Q Consensus 273 GqpT~eDla~L~~lGI-KTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d~~~~PVL 351 (814)
..++++++..+.+.|= -.|||.|++. + +. .....| -+|+|+. .+...+..+....+.||+
T Consensus 10 ~~i~~~~l~~~~~~~~~~~liDvR~~~-e---~~-----~ghIpg--ainip~~--------~l~~~~~~l~~~~~~~iv 70 (109)
T cd01533 10 PSVSADELAALQARGAPLVVLDGRRFD-E---YR-----KMTIPG--SVSCPGA--------ELVLRVGELAPDPRTPIV 70 (109)
T ss_pred CcCCHHHHHHHHhcCCCcEEEeCCCHH-H---Hh-----cCcCCC--ceeCCHH--------HHHHHHHhcCCCCCCeEE
Confidence 3568888887766552 4699999975 2 11 011122 2344432 333344434223467999
Q ss_pred EeCccCCChHHHHHHHHHHhCCCC
Q 003509 352 LHSKEGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 352 VHCtAGKDRTGal~aLLl~l~GV~ 375 (814)
|||..|. |+..++..+. .+|.+
T Consensus 71 v~C~~G~-rs~~a~~~L~-~~G~~ 92 (109)
T cd01533 71 VNCAGRT-RSIIGAQSLI-NAGLP 92 (109)
T ss_pred EECCCCc-hHHHHHHHHH-HCCCC
Confidence 9999998 8875554443 35764
No 83
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=93.47 E-value=0.11 Score=58.11 Aligned_cols=54 Identities=22% Similarity=0.306 Sum_probs=43.3
Q ss_pred cccEEEEEcCchhHHHHHhhhcCCCCcEEEEeCCCcccCC--CCCcccHHHHHhhhh
Q 003509 755 RVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLT--SHPVSSYLNSLCFLS 809 (814)
Q Consensus 755 ~vDLVIvLGGDGTILrAArlf~~s~~PILGINlGrLGFLT--e~~~dei~eaLe~L~ 809 (814)
.+|+|+..|||||.=-++.-. +.++|||||..|.=-|.. .++|+.....+..++
T Consensus 100 gVdlIvfaGGDGTarDVa~av-~~~vPvLGipaGvk~~SgvfA~~P~~aa~l~~~~l 155 (355)
T COG3199 100 GVDLIVFAGGDGTARDVAEAV-GADVPVLGIPAGVKNYSGVFALSPEDAARLLGAFL 155 (355)
T ss_pred CceEEEEeCCCccHHHHHhhc-cCCCceEeeccccceeccccccChHHHHHHHHHHh
Confidence 699999999999987777766 669999999999766663 667777766666554
No 84
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=93.36 E-value=0.55 Score=43.61 Aligned_cols=96 Identities=11% Similarity=0.016 Sum_probs=50.1
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCC---------CCCCHHHHHHHHHHHhcC
Q 003509 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVR---------TAPTMEQVEKFASLVSNS 345 (814)
Q Consensus 275 pT~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~---------~~ps~e~v~~fleiL~d~ 345 (814)
++++++..+...+-..|||.|+.+ +... ...+-......|. +++|.... ..++.+.+.+++..+...
T Consensus 2 i~~~~l~~~l~~~~~~ivDvR~~~-~~~~-~~~~~~~ghI~ga--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (122)
T cd01448 2 VSPDWLAEHLDDPDVRILDARWYL-PDRD-GRKEYLEGHIPGA--VFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGIS 77 (122)
T ss_pred cCHHHHHHHhCCCCeEEEEeecCC-CCCc-hhhHHhhCCCCCC--EEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCC
Confidence 355666655444335799999984 1100 0000001122333 55664321 124456666666544334
Q ss_pred CCCcEEEeCccCCChHHHHHHHHHHhCCCC
Q 003509 346 SKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 346 ~~~PVLVHCtAGKDRTGal~aLLl~l~GV~ 375 (814)
.+.||+|+|..|-.|+..++.++ ..+|.+
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l-~~~G~~ 106 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTL-RYFGHE 106 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHH-HHcCCC
Confidence 67899999999732554444333 446765
No 85
>PLN02204 diacylglycerol kinase
Probab=92.72 E-value=0.56 Score=56.12 Aligned_cols=76 Identities=21% Similarity=0.284 Sum_probs=46.9
Q ss_pred ccCCEEEEEecCCc---hHHHHHHHHHHHHhcCCCeEEEE--ccchhhHhhcCCCCccceeeeccCccc-ccCcccEEEE
Q 003509 688 TTPRTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILV--EPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVAC 761 (814)
Q Consensus 688 ~~~kkVlIV~K~~~---ea~~~a~eLi~~L~e~~Gi~V~v--e~~~a~~l~~~p~~~~v~~~~~~~~~~-l~~~vDLVIv 761 (814)
..+|+++|+.||.. .....+.++...|.. .++++.+ -+..-.... .. ....+ ..+..|.||+
T Consensus 157 ~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~-a~i~~~v~~T~~aghA~d------~~-----~~~~~~~l~~~D~VVa 224 (601)
T PLN02204 157 GRPKNLLVFVHPLSGKGSGSRTWETVSPIFIR-AKVKTKVIVTERAGHAFD------VM-----ASISNKELKSYDGVIA 224 (601)
T ss_pred CCCceEEEEECCCCCCcchHHHHHHHHHHHHH-cCCeEEEEEecCcchHHH------HH-----HHHhhhhccCCCEEEE
Confidence 57889999999984 466677788888876 6766433 221111000 00 00111 1246799999
Q ss_pred EcCchhHHHHHhhh
Q 003509 762 LGGDGVILHASNLF 775 (814)
Q Consensus 762 LGGDGTILrAArlf 775 (814)
+||||||=.+++-+
T Consensus 225 VGGDGt~nEVlNGL 238 (601)
T PLN02204 225 VGGDGFFNEILNGY 238 (601)
T ss_pred EcCccHHHHHHHHH
Confidence 99999976666533
No 86
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=92.59 E-value=0.13 Score=58.31 Aligned_cols=103 Identities=18% Similarity=0.244 Sum_probs=67.1
Q ss_pred CCHhh-HHHHHHcC--CcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCC-CCCHHHHHHHHHHHhc------
Q 003509 275 VTEEG-LKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRT-APTMEQVEKFASLVSN------ 344 (814)
Q Consensus 275 pT~eD-la~L~~lG--IKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~-~ps~e~v~~fleiL~d------ 344 (814)
-++.+ +..|+++| +--+|||.... ..|. ....+..|+.|+.+--.... .|+.+.+..|..++..
T Consensus 48 f~~~dl~~~l~~~~~~vgl~iDltnt~---ryy~---~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~ 121 (393)
T KOG2386|consen 48 FQPKDLFELLKEHNYKVGLKIDLTNTL---RYYD---KPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTK 121 (393)
T ss_pred cCHHHHHHHHHhcCceEEEEEecccee---eeec---cccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHhccc
Confidence 34444 56677664 45789996654 2232 22357789999988876444 5777777777766542
Q ss_pred CCCCcEEEeCccCCChHH-HHHHHHHHhCCCCHHHHHHHH
Q 003509 345 SSKKPLYLHSKEGVWRTY-AMVSRWRQYMARCASQISGQT 383 (814)
Q Consensus 345 ~~~~PVLVHCtAGKDRTG-al~aLLl~l~GV~~edIiaDY 383 (814)
..+.=|++||+.|+.||| .+++++..-.+++..+|++-+
T Consensus 122 ~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f 161 (393)
T KOG2386|consen 122 LDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRF 161 (393)
T ss_pred CCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHHH
Confidence 223459999999999999 555555444567777765543
No 87
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=92.02 E-value=0.2 Score=56.28 Aligned_cols=46 Identities=28% Similarity=0.371 Sum_probs=29.3
Q ss_pred CCCCCCC-HHHHHHHHHHHh---cCCCCcEEEeCccCCChHHHHHHHHHH
Q 003509 325 EVRTAPT-MEQVEKFASLVS---NSSKKPLYLHSKEGVWRTYAMVSRWRQ 370 (814)
Q Consensus 325 ~d~~~ps-~e~v~~fleiL~---d~~~~PVLVHCtAGKDRTGal~aLLl~ 370 (814)
.+...|+ ...+.+|...+. +....|++|||.||.+|||++.+|=++
T Consensus 261 Pd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~L 310 (374)
T KOG0791|consen 261 PDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRL 310 (374)
T ss_pred cccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHH
Confidence 3344442 333444444433 345789999999999999977665544
No 88
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=91.85 E-value=0.11 Score=55.17 Aligned_cols=64 Identities=19% Similarity=0.321 Sum_probs=47.6
Q ss_pred HHHHHHhhcCCCCCcc-cccccCCCCcccCcccccccchhh--HHHhhccCcccccCCCccccccccccc
Q 003509 108 HAALMDTLCNPLTGEC-TVSYEFTPEEKPLLEDKIVSVLGC--MLSLLNKGREDVLSGRSSIMNAYRVAD 174 (814)
Q Consensus 108 ~~a~~~~~~~~~~~e~-~~~~d~~~~~~~~led~i~~~~~~--~~~~ln~gr~~~~~~~~~~~~nf~~~~ 174 (814)
+.-+|+.|.-.+..+| ..+-+-+|++++|.||+|||+.+. |+-+.---.+++|+||| |||++.+
T Consensus 178 ~eSlmdrLntd~h~aclkId~~C~VLTvhGs~D~IVPve~AkefAk~i~nH~L~iIEgAD---Hnyt~~q 244 (269)
T KOG4667|consen 178 EESLMDRLNTDIHEACLKIDKQCRVLTVHGSEDEIVPVEDAKEFAKIIPNHKLEIIEGAD---HNYTGHQ 244 (269)
T ss_pred HHHHHHHHhchhhhhhcCcCccCceEEEeccCCceeechhHHHHHHhccCCceEEecCCC---cCccchh
Confidence 3445655555544444 245556779999999999999999 66666556789999999 9999843
No 89
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=91.74 E-value=0.25 Score=55.19 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=19.0
Q ss_pred CCCcEEEeCccCCChHHHHHHHH
Q 003509 346 SKKPLYLHSKEGVWRTYAMVSRW 368 (814)
Q Consensus 346 ~~~PVLVHCtAGKDRTGal~aLL 368 (814)
..+|++|||.+|.||||+++++-
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~ 320 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIE 320 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHH
Confidence 35799999999999999766533
No 90
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=91.05 E-value=0.81 Score=41.16 Aligned_cols=87 Identities=24% Similarity=0.221 Sum_probs=46.1
Q ss_pred CHhhHHHHHH-cCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCC---CCCHHHHHHHHHHHhcCCCCcEE
Q 003509 276 TEEGLKWLME-KGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRT---APTMEQVEKFASLVSNSSKKPLY 351 (814)
Q Consensus 276 T~eDla~L~~-lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~---~ps~e~v~~fleiL~d~~~~PVL 351 (814)
+.+++..+.+ .+=-+|||.|++. + +. .-...|. +++|+.... .++.+.+.+++.......+.||+
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~-e---~~-----~ghIpgA--~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 70 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPE-E---LK-----TGKIPGA--INIPLSSLPDALALSEEEFEKKYGFPKPSKDKELI 70 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHH-H---Hh-----cCcCCCc--EEechHHhhhhhCCCHHHHHHHhcccCCCCCCeEE
Confidence 3455555544 4336799999975 2 11 0112232 556654321 12333444444332223467999
Q ss_pred EeCccCCChHHHHHHHHHHhCCCC
Q 003509 352 LHSKEGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 352 VHCtAGKDRTGal~aLLl~l~GV~ 375 (814)
++|..|. |+..++.++ ..+|..
T Consensus 71 v~c~~g~-~s~~~~~~l-~~~G~~ 92 (106)
T cd01519 71 FYCKAGV-RSKAAAELA-RSLGYE 92 (106)
T ss_pred EECCCcH-HHHHHHHHH-HHcCCc
Confidence 9999997 776544444 345754
No 91
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=90.58 E-value=1.3 Score=39.84 Aligned_cols=81 Identities=11% Similarity=0.204 Sum_probs=46.1
Q ss_pred CCCHhhHHHHHHcC--CcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhc-CCCCcE
Q 003509 274 QVTEEGLKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN-SSKKPL 350 (814)
Q Consensus 274 qpT~eDla~L~~lG--IKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d-~~~~PV 350 (814)
|++++++..+.+.+ --.|||+|+.+ + +. .....|. +++|.. .+..+.+.+.. ..+.|+
T Consensus 1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~-e---~~-----~~hI~ga--~~ip~~--------~~~~~~~~~~~~~~~~~v 61 (101)
T cd01528 1 QISVAELAEWLADEREEPVLIDVREPE-E---LE-----IAFLPGF--LHLPMS--------EIPERSKELDSDNPDKDI 61 (101)
T ss_pred CCCHHHHHHHHhcCCCCCEEEECCCHH-H---Hh-----cCcCCCC--EecCHH--------HHHHHHHHhcccCCCCeE
Confidence 46777777665554 34799999975 2 11 0122332 344532 23334444422 246799
Q ss_pred EEeCccCCChHHHHHHHHHHhCCCC
Q 003509 351 YLHSKEGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 351 LVHCtAGKDRTGal~aLLl~l~GV~ 375 (814)
+++|..|. |+-..+..+.. .|.+
T Consensus 62 v~~c~~g~-rs~~~~~~l~~-~G~~ 84 (101)
T cd01528 62 VVLCHHGG-RSMQVAQWLLR-QGFE 84 (101)
T ss_pred EEEeCCCc-hHHHHHHHHHH-cCCc
Confidence 99999996 87655544444 5654
No 92
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=89.67 E-value=1.5 Score=39.20 Aligned_cols=80 Identities=19% Similarity=0.152 Sum_probs=42.8
Q ss_pred CCHhhHHHHHHcC--CcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEE
Q 003509 275 VTEEGLKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYL 352 (814)
Q Consensus 275 pT~eDla~L~~lG--IKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d~~~~PVLV 352 (814)
+++++++.+.+.+ --.+||.|+.. + +. .....| -+++|.. .+..-...+....+.||++
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~-e---~~-----~ghipg--a~~ip~~--------~l~~~~~~~~~~~~~~iv~ 61 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPE-E---YE-----AGHLPG--FRHTPGG--------QLVQETDHFAPVRGARIVL 61 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHH-H---HH-----hCCCCC--cEeCCHH--------HHHHHHHHhcccCCCeEEE
Confidence 3566777665554 34689999875 1 11 011223 2455542 1111111221223578999
Q ss_pred eCccCCChHHHHHHHHHHhCCCC
Q 003509 353 HSKEGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 353 HCtAGKDRTGal~aLLl~l~GV~ 375 (814)
+|..|. |+...+..+ ..+|.+
T Consensus 62 ~c~~G~-rs~~aa~~L-~~~G~~ 82 (95)
T cd01534 62 ADDDGV-RADMTASWL-AQMGWE 82 (95)
T ss_pred ECCCCC-hHHHHHHHH-HHcCCE
Confidence 999998 876544444 445663
No 93
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=89.58 E-value=0.96 Score=49.40 Aligned_cols=94 Identities=19% Similarity=0.296 Sum_probs=54.7
Q ss_pred CEEEEEecCCc-h-HHHHHHHHHHHHhcCCCeEEEEccchhh-Hhh---------------cCCCCcccee--eecc-Cc
Q 003509 691 RTVLVLKKPGP-A-LMEEAKEVASFLYHQEKMNILVEPDVHD-IFA---------------RIPGFGFVQT--FYLQ-DT 749 (814)
Q Consensus 691 kkVlIV~K~~~-e-a~~~a~eLi~~L~e~~Gi~V~ve~~~a~-~l~---------------~~p~~~~v~~--~~~~-~~ 749 (814)
|+|+|+.--++ . .-..+..+++.... +|++|+--.+-.+ .+. ..++. .+.+ +... +.
T Consensus 1 KrI~Il~sGG~apG~Na~i~~~v~~a~~-~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt-~lgtsR~~~~~~~ 78 (282)
T PF00365_consen 1 KRIAILTSGGDAPGMNAAIRGVVRYAIR-RGWEVYGIRNGFEGLLNGDIIELTWEDVRGIINQGGT-ILGTSRFKPFKDP 78 (282)
T ss_dssp EEEEEEEESS--TTHHHHHHHHHHHHHH-TTSEEEEETTHHHHHHHCTEEEECGGGGTTGGGSSSS-TTTBBBSSGGGSH
T ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHh-cCCEEEEEEccCccceeeeEEeecccCccccccCCCc-EeCcccCccccch
Confidence 68999998887 4 44456778877776 7888876433111 111 11111 0000 0000 00
Q ss_pred c-------cc-cCcccEEEEEcCchhHHHHHhhhcCCCCcEEEEe
Q 003509 750 S-------DL-HERVDFVACLGGDGVILHASNLFRGAVPPVISFN 786 (814)
Q Consensus 750 ~-------~l-~~~vDLVIvLGGDGTILrAArlf~~s~~PILGIN 786 (814)
+ .+ ..++|.+|+||||||+-.|..+.....+||+||-
T Consensus 79 ~~~~~~~~~l~~~~Id~Li~IGG~gs~~~a~~L~~~~~i~vigiP 123 (282)
T PF00365_consen 79 EGRKKIVENLKKLGIDALIVIGGDGSMKGAHKLSEEFGIPVIGIP 123 (282)
T ss_dssp HHHHHHHHHHHHTTESEEEEEESHHHHHHHHHHHHHHHSEEEEEE
T ss_pred hhhhhHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCceEEEEEe
Confidence 0 01 2479999999999997666555435579999994
No 94
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=89.45 E-value=1.2 Score=39.97 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=47.4
Q ss_pred HhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcE-EEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCc
Q 003509 277 EEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVE-LIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSK 355 (814)
Q Consensus 277 ~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~-yVhIPV~d~~~ps~e~v~~fleiL~d~~~~PVLVHCt 355 (814)
......+...+--.|||.|++. |-. ..+-.. .+|+|+..... +........++|++++|.
T Consensus 9 ~~~~~~~~~~~~~~liDvR~~~-e~~----------~~~i~~~~~~ip~~~~~~--------~~~~~~~~~~~~ivv~C~ 69 (110)
T COG0607 9 EDEAALLLAGEDAVLLDVREPE-EYE----------RGHIPGAAINIPLSELKA--------AENLLELPDDDPIVVYCA 69 (110)
T ss_pred HHHHHHhhccCCCEEEeccChh-Hhh----------hcCCCcceeeeecccchh--------hhcccccCCCCeEEEEeC
Confidence 3344555666788999999985 211 111122 78888874211 111110245789999999
Q ss_pred cCCChHHHHHHHHHHhCCCC
Q 003509 356 EGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 356 AGKDRTGal~aLLl~l~GV~ 375 (814)
+|. |++..+..+.. +|..
T Consensus 70 ~G~-rS~~aa~~L~~-~G~~ 87 (110)
T COG0607 70 SGV-RSAAAAAALKL-AGFT 87 (110)
T ss_pred CCC-ChHHHHHHHHH-cCCc
Confidence 999 99877666655 4644
No 95
>PRK01415 hypothetical protein; Validated
Probab=89.36 E-value=2.8 Score=45.21 Aligned_cols=167 Identities=12% Similarity=0.060 Sum_probs=86.5
Q ss_pred CCCcccchhhHhhhhhHHHHHHHhccCccC------ccchhHHHHHHHhhhhcccCCCC---CCCCCCCCccCCCcccee
Q 003509 182 LPPLAIFRSEMKRCCESMHIALENYLTPED------VRSLDVWRKLQRLKNVCYDSGFP---RGDDYPIHTLFANWSPVY 252 (814)
Q Consensus 182 ~p~l~l~r~~l~~~~~~l~~~l~~yl~p~~------~~~~~~~rkLqr~~~~~~d~g~p---R~~g~p~~t~i~Nfr~V~ 252 (814)
+++..-+|..+..+|+.+.+..-=|+++++ +-.-.+..=++.+++ |-++. --..+++...|...+.=
T Consensus 16 i~~~~~~~~~l~~~~~~~~~~G~i~la~EGIN~tisg~~~~~~~~~~~l~~---~~~~~~~~~k~s~~~~~~F~~l~vr- 91 (247)
T PRK01415 16 IEEPANLIPKLLLIGKRKYVRGTILLANEGFNGSFSGSYENVNLVLEELIK---LTGPKDVNVKINYSDVHPFQKLKVR- 91 (247)
T ss_pred CCCHHHHHHHHHHHHHHcCCeeEEEEccCccceEeeCCHHHHHHHHHHHHh---CcCCCCceeecccccCCCCCccEEE-
Confidence 445677899999999998888888999988 111112222222222 11221 01122333333333211
Q ss_pred ecC--CccccccCCCcceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCC
Q 003509 253 LSN--SKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAP 330 (814)
Q Consensus 253 ~~~--~~d~~~~~~~e~~LYRSGqpT~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~p 330 (814)
..+ .+.......+ ..-++..++++++..+.+..=-+|||.|.+. |-.. -...| -+++|+.
T Consensus 92 ~k~eiV~~g~~~~~~--~~~~g~~i~p~e~~~ll~~~~~vvIDVRn~~-E~~~--------Ghi~g--Ainip~~----- 153 (247)
T PRK01415 92 LKKEIVAMNVDDLNV--DLFKGEYIEPKDWDEFITKQDVIVIDTRNDY-EVEV--------GTFKS--AINPNTK----- 153 (247)
T ss_pred eeceEEecCCCCCCc--cccCccccCHHHHHHHHhCCCcEEEECCCHH-HHhc--------CCcCC--CCCCChH-----
Confidence 111 0000000111 1124557899999888776556799999986 2100 01112 1334433
Q ss_pred CHHHHHHHHHH----HhcCCCCcEEEeCccCCChHHHHHHHHHHhCCCC
Q 003509 331 TMEQVEKFASL----VSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 331 s~e~v~~flei----L~d~~~~PVLVHCtAGKDRTGal~aLLl~l~GV~ 375 (814)
.+.+|-+. .....++||+++|++|. |+-.++.+++. .|..
T Consensus 154 ---~f~e~~~~~~~~~~~~k~k~Iv~yCtgGi-Rs~kAa~~L~~-~Gf~ 197 (247)
T PRK01415 154 ---TFKQFPAWVQQNQELLKGKKIAMVCTGGI-RCEKSTSLLKS-IGYD 197 (247)
T ss_pred ---HHhhhHHHHhhhhhhcCCCeEEEECCCCh-HHHHHHHHHHH-cCCC
Confidence 22222111 11235689999999998 98877766654 4654
No 96
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=89.23 E-value=0.56 Score=53.95 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhc-----CCCCcEEEeCccCCChHHH
Q 003509 332 MEQVEKFASLVSN-----SSKKPLYLHSKEGVWRTYA 363 (814)
Q Consensus 332 ~e~v~~fleiL~d-----~~~~PVLVHCtAGKDRTGa 363 (814)
+-.+..|++-+.. ...+||.|||+||.||||+
T Consensus 431 Pg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGT 467 (600)
T KOG0790|consen 431 PGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGT 467 (600)
T ss_pred ccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcce
Confidence 3445566665532 1346999999999999993
No 97
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=89.22 E-value=1.5 Score=49.56 Aligned_cols=118 Identities=18% Similarity=0.218 Sum_probs=69.9
Q ss_pred cCCEEEEEecCCc-hH-HHHHHHHHHHHhcCCCeEEEEccchh-hHhhc---------------CCCCc----cceeeec
Q 003509 689 TPRTVLVLKKPGP-AL-MEEAKEVASFLYHQEKMNILVEPDVH-DIFAR---------------IPGFG----FVQTFYL 746 (814)
Q Consensus 689 ~~kkVlIV~K~~~-ea-~~~a~eLi~~L~e~~Gi~V~ve~~~a-~~l~~---------------~p~~~----~v~~~~~ 746 (814)
++++|+|++--++ .- -...+.+++.+.. .|++|+--.+-. ..+.. ..++. ....|..
T Consensus 1 ~~kkIaIlTSGGdaPGmNa~Iravvr~a~~-~g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT~lgssR~~~~~~ 79 (347)
T COG0205 1 MMKKIAILTSGGDAPGMNAVIRAVVRTAIK-EGLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGTFLGSARFPEFKT 79 (347)
T ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHH-cCCEEEEEecchhhhcCCcceeccccchhHHHhcCCeEEeeCCCCCccc
Confidence 4789999999998 43 3446778888877 588887533211 11100 01100 0000100
Q ss_pred cC-----cccc-cCcccEEEEEcCchhHHHHHhhhcCCCCcEEEEeC-------C---CcccCCCCCcccHHHHHhhhh
Q 003509 747 QD-----TSDL-HERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPVSSYLNSLCFLS 809 (814)
Q Consensus 747 ~~-----~~~l-~~~vDLVIvLGGDGTILrAArlf~~s~~PILGINl-------G---rLGFLTe~~~dei~eaLe~L~ 809 (814)
.+ .+.+ ....|.+|+||||||.=-|..+...-.+|++||-- | ++||.|..+ -+-+++++|.
T Consensus 80 ~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~~i~vVGvPkTIDNDi~~td~tiGfdTA~~--~~~eaid~l~ 156 (347)
T COG0205 80 EEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEGGIPVVGVPKTIDNDISGTDFTIGFDTALE--TAVEAIDNLR 156 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhcCCcEEecCCCccCCCcccccCccHHHHHH--HHHHHHHHHH
Confidence 00 0001 24799999999999998888887766699999932 2 578877643 3444555443
No 98
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=89.19 E-value=2.4 Score=37.82 Aligned_cols=80 Identities=18% Similarity=0.307 Sum_probs=46.8
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCC----CCCCCHHHHHHHHHHHhc--CCCCc
Q 003509 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEV----RTAPTMEQVEKFASLVSN--SSKKP 349 (814)
Q Consensus 276 T~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d----~~~ps~e~v~~fleiL~d--~~~~P 349 (814)
|++++..+.+.+=-.|||.|+.. + +. .-...|- +|+|... ......+....+...... ..+.+
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~-~---~~-----~~hI~ga--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPE-E---YE-----RGHIPGA--VNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKD 69 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHH-H---HH-----HSBETTE--EEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSE
T ss_pred CHHHHHhhhhCCCeEEEEeCCHH-H---HH-----cCCCCCC--cccccccccccccccccccccccccccccccccccc
Confidence 46677666655778999999875 1 11 1223343 7788732 222334444444333322 44568
Q ss_pred EEEeCccCCChHHHHHHH
Q 003509 350 LYLHSKEGVWRTYAMVSR 367 (814)
Q Consensus 350 VLVHCtAGKDRTGal~aL 367 (814)
|+|+|..|. |++.++++
T Consensus 70 iv~yc~~~~-~~~~~~~~ 86 (113)
T PF00581_consen 70 IVFYCSSGW-RSGSAAAA 86 (113)
T ss_dssp EEEEESSSC-HHHHHHHH
T ss_pred ceeeeeccc-ccchhHHH
Confidence 999998888 88854444
No 99
>PLN02884 6-phosphofructokinase
Probab=88.78 E-value=0.99 Score=51.93 Aligned_cols=130 Identities=16% Similarity=0.192 Sum_probs=76.1
Q ss_pred cCCchhHHhhcccccCCEEEEEecCCc-h-HHHHHHHHHHHHhcCCCe-EEEEccc-hhhHhhc----------------
Q 003509 675 THPSTQQQMLMWKTTPRTVLVLKKPGP-A-LMEEAKEVASFLYHQEKM-NILVEPD-VHDIFAR---------------- 734 (814)
Q Consensus 675 ~~ps~~~~~l~w~~~~kkVlIV~K~~~-e-a~~~a~eLi~~L~e~~Gi-~V~ve~~-~a~~l~~---------------- 734 (814)
.|....-+.+-+.....+|+|++--++ . .-...+.++..+.. .|+ +|+--.+ +...+..
T Consensus 38 ~~~agpr~~~~~~p~~~rIaIltsGGdaPGmNa~Iravv~~a~~-~g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~ 116 (411)
T PLN02884 38 VHRAGPRKKIYFEPEEVKAAIVTCGGLCPGLNDVIRQIVFTLEI-YGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIH 116 (411)
T ss_pred hhhcCCceeEEeCCcceEEEEEcCCCCCccHhHHHHHHHHHHHH-cCCcEEEEEccCHHHHhCCCceeeecCHHHHHHHH
Confidence 333333446778888899999999887 4 45556788888765 587 6763222 1111110
Q ss_pred -CCCCccceee-eccCcccc-----cCcccEEEEEcCchhHHHHHhhhc-----CCCCcEEEEeC-------C---Cccc
Q 003509 735 -IPGFGFVQTF-YLQDTSDL-----HERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL-------G---SLGF 792 (814)
Q Consensus 735 -~p~~~~v~~~-~~~~~~~l-----~~~vDLVIvLGGDGTILrAArlf~-----~s~~PILGINl-------G---rLGF 792 (814)
.++. .+.+- .......+ ..++|.+|+||||||+-.|.++.. ...+||+||-. | ++||
T Consensus 117 ~~GGt-~LGtsR~~~~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiGF 195 (411)
T PLN02884 117 LSGGS-LLGVSRGGAKTSDIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGF 195 (411)
T ss_pred hCCCc-eeccCCCCccHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccCCCcCcccCCCH
Confidence 0110 00000 00011111 247999999999999987777654 24599999932 2 5888
Q ss_pred CCCCCcccHHHHHhhh
Q 003509 793 LTSHPVSSYLNSLCFL 808 (814)
Q Consensus 793 LTe~~~dei~eaLe~L 808 (814)
-|-++ .+.+++++|
T Consensus 196 dTAv~--~~~~ai~~l 209 (411)
T PLN02884 196 DTAVE--EAQRAINSA 209 (411)
T ss_pred HHHHH--HHHHHHHHH
Confidence 77644 345555544
No 100
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=88.53 E-value=2.9 Score=39.16 Aligned_cols=87 Identities=17% Similarity=0.182 Sum_probs=46.7
Q ss_pred CCHhhHHHHHHcC-CcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCC--CCCHHHHHHHHHHHhcCCCCcEE
Q 003509 275 VTEEGLKWLMEKG-YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRT--APTMEQVEKFASLVSNSSKKPLY 351 (814)
Q Consensus 275 pT~eDla~L~~lG-IKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~--~ps~e~v~~fleiL~d~~~~PVL 351 (814)
++++++..+.+.+ =-+|||.|++. +... .-...| -+++|..... .++......+...+ ..++||+
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~-e~~~-------~ghIpg--A~~ip~~~~~~~~~~~~~~~~l~~~~--~~~~~iv 68 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEA-EWKF-------VGGVPD--AVHVAWQVYPDMEINPNFLAELEEKV--GKDRPVL 68 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHH-HHhc-------ccCCCC--ceecchhhccccccCHHHHHHHHhhC--CCCCeEE
Confidence 3566666665553 35699999875 2110 011222 3556654221 11222222333333 3567999
Q ss_pred EeCccCCChHHHHHHHHHHhCCCC
Q 003509 352 LHSKEGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 352 VHCtAGKDRTGal~aLLl~l~GV~ 375 (814)
++|..|. |+..++..+.. +|.+
T Consensus 69 v~C~~G~-rs~~aa~~L~~-~G~~ 90 (117)
T cd01522 69 LLCRSGN-RSIAAAEAAAQ-AGFT 90 (117)
T ss_pred EEcCCCc-cHHHHHHHHHH-CCCC
Confidence 9999997 88866555543 5654
No 101
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=88.51 E-value=0.88 Score=41.83 Aligned_cols=95 Identities=15% Similarity=0.108 Sum_probs=48.2
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhh---hHHhhhcCCcEEEEeecCCC-----CCCCHHHHHHHHHHHhcCCC
Q 003509 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAA---IDDAILSGKVELIKIPVEVR-----TAPTMEQVEKFASLVSNSSK 347 (814)
Q Consensus 276 T~eDla~L~~lGIKTVIDLRsee~E~~~~p~~---e~~~~e~~GI~yVhIPV~d~-----~~ps~e~v~~fleiL~d~~~ 347 (814)
+++++..+.+.+=-.|||.|+.. +-...... +...-...| -+|+|.... ..+..+.+++++.-+.-..+
T Consensus 2 s~~~l~~~l~~~~~~iiDvR~~~-e~~~~~~~~~~~~~~ghIpg--A~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (118)
T cd01449 2 TAEEVLANLDSGDVQLVDARSPE-RFRGEVPEPRPGLRSGHIPG--AVNIPWTSLLDEDGTFKSPEELRALFAALGITPD 78 (118)
T ss_pred CHHHHHHhcCCCCcEEEeCCCHH-HcCCcCCCCCCCCcCCcCCC--CcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCC
Confidence 45566655444324899999975 21110000 000011122 245554321 11334555555544322357
Q ss_pred CcEEEeCccCCChHHHHHHHHHHhCCCC
Q 003509 348 KPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 348 ~PVLVHCtAGKDRTGal~aLLl~l~GV~ 375 (814)
.||+++|..|. |+..++..+ ..+|.+
T Consensus 79 ~~iv~yc~~g~-~s~~~~~~l-~~~G~~ 104 (118)
T cd01449 79 KPVIVYCGSGV-TACVLLLAL-ELLGYK 104 (118)
T ss_pred CCEEEECCcHH-HHHHHHHHH-HHcCCC
Confidence 79999999987 877655444 345765
No 102
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=88.00 E-value=2.1 Score=37.69 Aligned_cols=80 Identities=11% Similarity=0.184 Sum_probs=43.3
Q ss_pred CCHhhHHHHHHcCC-cEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 003509 275 VTEEGLKWLMEKGY-KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 353 (814)
Q Consensus 275 pT~eDla~L~~lGI-KTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d~~~~PVLVH 353 (814)
++++++..+.+.+- -.|||+|+.. +-... .....| -+++|.. .+......+ ..+.|++||
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~-e~~~~------~~hi~g--a~~ip~~--------~~~~~~~~~--~~~~~ivv~ 62 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPA-SYAAL------PDHIPG--AIHLDED--------SLDDWLGDL--DRDRPVVVY 62 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHH-HHhcc------cCCCCC--CeeCCHH--------HHHHHHhhc--CCCCCEEEE
Confidence 46667766555432 4699999974 11000 001112 2333332 344444333 356799999
Q ss_pred CccCCChHHHHHHHHHHhCCCC
Q 003509 354 SKEGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 354 CtAGKDRTGal~aLLl~l~GV~ 375 (814)
|..|. |+..++..+.. .|.+
T Consensus 63 c~~g~-~s~~a~~~l~~-~G~~ 82 (96)
T cd01444 63 CYHGN-SSAQLAQALRE-AGFT 82 (96)
T ss_pred eCCCC-hHHHHHHHHHH-cCCc
Confidence 99887 77755554443 4654
No 103
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=87.70 E-value=1.2 Score=39.78 Aligned_cols=78 Identities=18% Similarity=0.242 Sum_probs=45.1
Q ss_pred CCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 003509 274 QVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 353 (814)
Q Consensus 274 qpT~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d~~~~PVLVH 353 (814)
.++++++..+.+.+ -+|||+|+.+ + +. .-...| -+++|.... ......+ ..++||+++
T Consensus 3 ~i~~~el~~~~~~~-~~liDvR~~~-e---~~-----~~hi~g--a~~ip~~~~--------~~~~~~~--~~~~~iv~~ 60 (99)
T cd01527 3 TISPNDACELLAQG-AVLVDIREPD-E---YL-----RERIPG--ARLVPLSQL--------ESEGLPL--VGANAIIFH 60 (99)
T ss_pred ccCHHHHHHHHHCC-CEEEECCCHH-H---HH-----hCcCCC--CEECChhHh--------cccccCC--CCCCcEEEE
Confidence 46778887776667 6899999975 2 11 011223 245554321 1111112 356799999
Q ss_pred CccCCChHHHHHHHHHHhCCCC
Q 003509 354 SKEGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 354 CtAGKDRTGal~aLLl~l~GV~ 375 (814)
|..|. |+..++..++. +|..
T Consensus 61 c~~g~-~s~~~~~~L~~-~g~~ 80 (99)
T cd01527 61 CRSGM-RTQQNAERLAA-ISAG 80 (99)
T ss_pred eCCCc-hHHHHHHHHHH-cCCc
Confidence 99998 87765555543 3543
No 104
>PRK05320 rhodanese superfamily protein; Provisional
Probab=87.34 E-value=1.5 Score=47.20 Aligned_cols=174 Identities=14% Similarity=0.118 Sum_probs=85.9
Q ss_pred CCCcccchhhHhhhhhHHHHHHHhccCccCc-cchh-HHHHHHHhhhhcccCCCCCCCCCCC---CccCCCccceeecCC
Q 003509 182 LPPLAIFRSEMKRCCESMHIALENYLTPEDV-RSLD-VWRKLQRLKNVCYDSGFPRGDDYPI---HTLFANWSPVYLSNS 256 (814)
Q Consensus 182 ~p~l~l~r~~l~~~~~~l~~~l~~yl~p~~~-~~~~-~~rkLqr~~~~~~d~g~pR~~g~p~---~t~i~Nfr~V~~~~~ 256 (814)
+++..-.|..+..+|+.+.+..-=|+++++= .++. -..++..+...... .|+.++... ...-+-|...... .
T Consensus 14 i~~~~~~~~~~~~~~~~~~~~G~i~ia~eGiN~t~~g~~~~id~~~~~l~~--~~~~~dl~~k~~~~~~~pF~~l~vk-~ 90 (257)
T PRK05320 14 LDDPETLRPLVLARCEALGLKGTILLAPEGINLFLAGTREAIDAFYAWLRA--DARFADLQVKESLSDSQPFRRMLVK-L 90 (257)
T ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEEcCCCceEEEEeeHHHHHHHHHHHhh--CCCccCceeecccccCCCchhccch-h
Confidence 4455678889999999988888889999881 1110 02233333322211 233333322 1112334442100 0
Q ss_pred cccc---ccCCCcceEEEcCCCCHhhHHHHHHcCC------cEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCC
Q 003509 257 KDDI---ASKDSEVTFCRGGQVTEEGLKWLMEKGY------KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVR 327 (814)
Q Consensus 257 ~d~~---~~~~~e~~LYRSGqpT~eDla~L~~lGI------KTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~ 327 (814)
++.+ +........-+...++++++..+.+.+- -.|||.|+.. |-.. -...| -+++|+...
T Consensus 91 k~eiv~~g~~~~n~~~~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~-E~~~--------Ghi~G--AiniPl~~f 159 (257)
T PRK05320 91 KREIITMKRPAIRPELGRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAF-EVDV--------GTFDG--ALDYRIDKF 159 (257)
T ss_pred hhHHhhcCCcccCcccCcCceeCHHHHHHHHhccccccCCCeEEEECCCHH-HHcc--------CccCC--CEeCChhHh
Confidence 0000 0000000111334678888877766542 3699999986 2110 11122 356676421
Q ss_pred CCCCHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHHHHhCCCC
Q 003509 328 TAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 328 ~~ps~e~v~~fleiL~d~~~~PVLVHCtAGKDRTGal~aLLl~l~GV~ 375 (814)
.. ....+.. ......++||+++|+.|. |+-.++..++. .|.+
T Consensus 160 ~~-~~~~l~~---~~~~~kdk~IvvyC~~G~-Rs~~Aa~~L~~-~Gf~ 201 (257)
T PRK05320 160 TE-FPEALAA---HRADLAGKTVVSFCTGGI-RCEKAAIHMQE-VGID 201 (257)
T ss_pred hh-hHHHHHh---hhhhcCCCeEEEECCCCH-HHHHHHHHHHH-cCCc
Confidence 10 0111111 111124689999999998 99877666654 4654
No 105
>PRK14071 6-phosphofructokinase; Provisional
Probab=86.73 E-value=0.57 Score=52.89 Aligned_cols=53 Identities=23% Similarity=0.283 Sum_probs=39.8
Q ss_pred cccEEEEEcCchhHHHHHhhhcCCCCcEEEEeC-------C---CcccCCCCCcccHHHHHhhhh
Q 003509 755 RVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPVSSYLNSLCFLS 809 (814)
Q Consensus 755 ~vDLVIvLGGDGTILrAArlf~~s~~PILGINl-------G---rLGFLTe~~~dei~eaLe~L~ 809 (814)
++|.+|+||||||+-.+.++.....+||+||-. | ++||-|-.+. +-+++++|.
T Consensus 107 ~Id~Li~IGGdgS~~~a~~L~~~~~i~vIgiPkTIDNDl~~td~t~Gf~TA~~~--~~~~id~i~ 169 (360)
T PRK14071 107 GLDALIGIGGDGSLAILRRLAQQGGINLVGIPKTIDNDVGATEVSIGFDTAVNI--ATEALDRLH 169 (360)
T ss_pred CCCEEEEECChhHHHHHHHHHHhcCCcEEEecccccCCCcCcccCcChhHHHHH--HHHHHHHHH
Confidence 799999999999986655555434899999832 3 6899888766 556666654
No 106
>PRK06186 hypothetical protein; Validated
Probab=86.72 E-value=1.7 Score=46.39 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=31.6
Q ss_pred cCcccEEEEEcCchh-----HHHHHhhhcCCCCcEEEEeCC
Q 003509 753 HERVDFVACLGGDGV-----ILHASNLFRGAVPPVISFNLG 788 (814)
Q Consensus 753 ~~~vDLVIvLGGDGT-----ILrAArlf~~s~~PILGINlG 788 (814)
.+.+|-|++.||=|. .+.|++.....++|+|||-+|
T Consensus 51 l~~~dgilvpgGfg~rg~~Gki~ai~~Are~~iP~LGIClG 91 (229)
T PRK06186 51 LAGFDGIWCVPGSPYRNDDGALTAIRFARENGIPFLGTCGG 91 (229)
T ss_pred HhhCCeeEeCCCCCcccHhHHHHHHHHHHHcCCCeEeechh
Confidence 457899999999775 678899999999999999998
No 107
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=86.53 E-value=1.9 Score=42.50 Aligned_cols=81 Identities=20% Similarity=0.242 Sum_probs=49.8
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCC-cEEEEeecCCCCCCCHHHHHHHHHHHh---cCCCCcEE
Q 003509 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGK-VELIKIPVEVRTAPTMEQVEKFASLVS---NSSKKPLY 351 (814)
Q Consensus 276 T~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~G-I~yVhIPV~d~~~ps~e~v~~fleiL~---d~~~~PVL 351 (814)
+-++...|.+.|=+..||.|.++ |- ...+ -.-|+||+......-...=.+|.+.+. -..++.|+
T Consensus 26 ~~~qvk~L~~~~~~~llDVRepe-Ef-----------k~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiI 93 (136)
T KOG1530|consen 26 SVEQVKNLLQHPDVVLLDVREPE-EF-----------KQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEII 93 (136)
T ss_pred EHHHHHHHhcCCCEEEEeecCHH-Hh-----------hccCCcceEeccccccccccccCCHHHHHHhcccCCCCCCcEE
Confidence 56677788888889999999987 32 1112 356888885322111111123444432 23456899
Q ss_pred EeCccCCChHHHHHHHHH
Q 003509 352 LHSKEGVWRTYAMVSRWR 369 (814)
Q Consensus 352 VHCtAGKDRTGal~aLLl 369 (814)
|||.+|+ |...+.-++.
T Consensus 94 f~C~SG~-Rs~~A~~~l~ 110 (136)
T KOG1530|consen 94 FGCASGV-RSLKATKILV 110 (136)
T ss_pred EEeccCc-chhHHHHHHH
Confidence 9999999 9885544443
No 108
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=86.31 E-value=2 Score=43.76 Aligned_cols=75 Identities=9% Similarity=0.150 Sum_probs=46.3
Q ss_pred CEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCch---h
Q 003509 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG---V 767 (814)
Q Consensus 691 kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDG---T 767 (814)
++|+||=+.+... ..|.++|++ .|.++.+..... .+.++ .+.+|.||++||-| .
T Consensus 2 ~~iliid~~dsf~----~~i~~~l~~-~g~~~~v~~~~~-----------------~~~~~-l~~~d~iIi~gGp~~~~~ 58 (190)
T PRK06895 2 TKLLIINNHDSFT----FNLVDLIRK-LGVPMQVVNVED-----------------LDLDE-VENFSHILISPGPDVPRA 58 (190)
T ss_pred cEEEEEeCCCchH----HHHHHHHHH-cCCcEEEEECCc-----------------cChhH-hccCCEEEECCCCCChHH
Confidence 5788888877632 336777777 677665532100 01112 23679999999998 2
Q ss_pred ---HHHHHhhhcCCCCcEEEEeCCC
Q 003509 768 ---ILHASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 768 ---ILrAArlf~~s~~PILGINlGr 789 (814)
++...+.+ ...+|||||-+|.
T Consensus 59 ~~~~~~~i~~~-~~~~PiLGIClG~ 82 (190)
T PRK06895 59 YPQLFAMLERY-HQHKSILGVCLGH 82 (190)
T ss_pred hhHHHHHHHHh-cCCCCEEEEcHHH
Confidence 22333332 3589999999974
No 109
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=85.64 E-value=1.8 Score=49.05 Aligned_cols=85 Identities=13% Similarity=0.185 Sum_probs=48.1
Q ss_pred CCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcC-CcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEE
Q 003509 274 QVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSG-KVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYL 352 (814)
Q Consensus 274 qpT~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~-GI~yVhIPV~d~~~ps~e~v~~fleiL~d~~~~PVLV 352 (814)
.++.+++..+.+.+=-.|||.|+++ |-.. .... +...+|+|+...... ..+...+....+.||+|
T Consensus 272 ~~~~~el~~~l~~~~~~lIDVR~~~-E~~~--------ghI~~~~gAinIPl~~l~~~-----~~~~~~l~~~~~~~Ivv 337 (370)
T PRK05600 272 RTDTTSLIDATLNGSATLLDVREPH-EVLL--------KDLPEGGASLKLPLSAITDD-----ADILHALSPIDGDNVVV 337 (370)
T ss_pred ccCHHHHHHHHhcCCeEEEECCCHH-Hhhh--------ccCCCCCccEeCcHHHhhcc-----hhhhhhccccCCCcEEE
Confidence 4677887766555433799999986 2110 0111 134678886522110 01122222222339999
Q ss_pred eCccCCChHHHHHHHHHHhCCC
Q 003509 353 HSKEGVWRTYAMVSRWRQYMAR 374 (814)
Q Consensus 353 HCtAGKDRTGal~aLLl~l~GV 374 (814)
||.+|. |+..++..++. +|.
T Consensus 338 ~C~sG~-RS~~Aa~~L~~-~G~ 357 (370)
T PRK05600 338 YCASGI-RSADFIEKYSH-LGH 357 (370)
T ss_pred ECCCCh-hHHHHHHHHHH-cCC
Confidence 999998 98866655544 465
No 110
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=84.70 E-value=0.85 Score=50.37 Aligned_cols=53 Identities=25% Similarity=0.432 Sum_probs=39.1
Q ss_pred CcccEEEEEcCchhHHHHHhhhcCCCCcEEEEeC-------C---CcccCCCCCcccHHHHHhhh
Q 003509 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPVSSYLNSLCFL 808 (814)
Q Consensus 754 ~~vDLVIvLGGDGTILrAArlf~~s~~PILGINl-------G---rLGFLTe~~~dei~eaLe~L 808 (814)
.++|.+|+||||||+=.|..+.....+||+||-. | ++||-|-. +.+-+++++|
T Consensus 90 ~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTIDNDl~~td~s~GfdTA~--~~~~~~i~~i 152 (301)
T TIGR02482 90 LGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDNDIPGTDYTIGFDTAL--NTIIDAVDKI 152 (301)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccccCCCcCcccCcChhHHH--HHHHHHHHHH
Confidence 3799999999999988887776657899999953 4 68887754 3334444444
No 111
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=84.45 E-value=0.48 Score=40.47 Aligned_cols=42 Identities=17% Similarity=-0.024 Sum_probs=34.5
Q ss_pred HHHhhhhhhhhhhhccccHHHHHHHhhccccccccccccccc
Q 003509 398 RKLKASAGKFLLEEKYETVKENQDEIQTKNGVFGFGLSVDMD 439 (814)
Q Consensus 398 ~a~~m~~~l~~l~~~~g~~ee~l~~l~~~~d~~le~ar~nl~ 439 (814)
+.+.|.+++..+++.+|+++.|+...+++++++++.+|.+++
T Consensus 27 ~~e~l~~~l~~i~~~yGs~e~Yl~~~lgl~~~~i~~Lr~~lL 68 (68)
T PF13348_consen 27 RPEYLEAALDAIDERYGSVENYLREELGLSEEDIERLRERLL 68 (68)
T ss_dssp -HHHHHHHHHHHHHHHSSHHHHHHHT-T--HHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHcCCCCHHHHHHHHHHcC
Confidence 456788899999999999999999999999999999998763
No 112
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=84.12 E-value=0.9 Score=50.60 Aligned_cols=52 Identities=27% Similarity=0.353 Sum_probs=38.1
Q ss_pred CcccEEEEEcCchhHHHHHhhhcCCCCcEEEEeC-------C---CcccCCCCCcccHHHHHhhh
Q 003509 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPVSSYLNSLCFL 808 (814)
Q Consensus 754 ~~vDLVIvLGGDGTILrAArlf~~s~~PILGINl-------G---rLGFLTe~~~dei~eaLe~L 808 (814)
-++|.+|+||||||+=.|..+ ....+||+||-. | ++||-|..+. +.+.++.+
T Consensus 93 ~~Id~LivIGGdgS~~~a~~L-~~~gi~vigiPkTIDNDl~gtd~tiGfdTA~~~--~~~~i~~i 154 (324)
T TIGR02483 93 LGLDALIAIGGDGTLGIARRL-ADKGLPVVGVPKTIDNDLEATDYTFGFDTAVEI--ATEALDRL 154 (324)
T ss_pred cCCCEEEEECCchHHHHHHHH-HhcCCCEEeeccccCCCCcCCccCcCHHHHHHH--HHHHHHHH
Confidence 479999999999999655554 445799999942 3 5888877655 55555554
No 113
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=83.81 E-value=0.5 Score=59.29 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcC---CCCcEEEeCccCCChHHH
Q 003509 333 EQVEKFASLVSNS---SKKPLYLHSKEGVWRTYA 363 (814)
Q Consensus 333 e~v~~fleiL~d~---~~~PVLVHCtAGKDRTGa 363 (814)
..+-+|++-+..- ..+|++|||+||.||||+
T Consensus 713 t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~ 746 (1087)
T KOG4228|consen 713 TGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGC 746 (1087)
T ss_pred hHHHHHHHHhccCCCcCCCCEEEECCCCCCCcce
Confidence 4455565555432 358999999999999994
No 114
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=83.78 E-value=1 Score=51.61 Aligned_cols=43 Identities=30% Similarity=0.394 Sum_probs=33.3
Q ss_pred CcccEEEEEcCchhHHHHHhhhc-----CCCCcEEEEeC-------C---CcccCCCC
Q 003509 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL-------G---SLGFLTSH 796 (814)
Q Consensus 754 ~~vDLVIvLGGDGTILrAArlf~-----~s~~PILGINl-------G---rLGFLTe~ 796 (814)
.++|.+|+||||||+-.|.++.. .+.+||+||-. | ++||-|.+
T Consensus 111 ~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td~t~Gf~TA~ 168 (403)
T PRK06555 111 DGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLGAWTAA 168 (403)
T ss_pred cCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCccCCcCHHHHH
Confidence 37999999999999988887754 35899999932 2 47776653
No 115
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=83.61 E-value=2.5 Score=44.13 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=48.5
Q ss_pred EEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHH--
Q 003509 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL-- 769 (814)
Q Consensus 692 kVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTIL-- 769 (814)
+|+|+-+.+ .....+.+||.+ .|+++.+.......+ .+..++....|.+|..||.|..-
T Consensus 2 ~ilv~d~~~----~~~~~~~~~l~~-~G~~~~~~~~~~~~~--------------~~~~~~~~~~dgliisGGp~~~~~~ 62 (214)
T PRK07765 2 RILVVDNYD----SFVFNLVQYLGQ-LGVEAEVWRNDDPRL--------------ADEAAVAAQFDGVLLSPGPGTPERA 62 (214)
T ss_pred eEEEEECCC----cHHHHHHHHHHH-cCCcEEEEECCCcCH--------------HHHHHhhcCCCEEEECCCCCChhhc
Confidence 466666554 223457888887 788887543211000 01112234689999999998653
Q ss_pred ----HHHhhhcCCCCcEEEEeCCC
Q 003509 770 ----HASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 770 ----rAArlf~~s~~PILGINlGr 789 (814)
..++.+....+|||||-+|.
T Consensus 63 ~~~~~~i~~~~~~~~PiLGIC~G~ 86 (214)
T PRK07765 63 GASIDMVRACAAAGTPLLGVCLGH 86 (214)
T ss_pred chHHHHHHHHHhCCCCEEEEccCH
Confidence 33444445689999999874
No 116
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=83.32 E-value=2.6 Score=39.38 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=37.6
Q ss_pred CCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHH
Q 003509 287 GYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVS 366 (814)
Q Consensus 287 GIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d~~~~PVLVHCtAGKDRTGal~a 366 (814)
-=++|||.|+++ + +. .-...| -+|+|+. ++...++.+....+.|++++|..|. |+..++.
T Consensus 19 ~~~~lIDvR~~~-e---f~-----~ghIpG--AiniP~~--------~l~~~l~~l~~~~~~~IVlyC~~G~-rS~~aa~ 78 (104)
T PRK10287 19 AAEHWIDVRVPE-Q---YQ-----QEHVQG--AINIPLK--------EVKERIATAVPDKNDTVKLYCNAGR-QSGQAKE 78 (104)
T ss_pred CCCEEEECCCHH-H---Hh-----cCCCCc--cEECCHH--------HHHHHHHhcCCCCCCeEEEEeCCCh-HHHHHHH
Confidence 347899999976 2 10 001122 2455543 3333333332234578999999996 8886655
Q ss_pred HHHHhCCCC
Q 003509 367 RWRQYMARC 375 (814)
Q Consensus 367 LLl~l~GV~ 375 (814)
.+.. +|.+
T Consensus 79 ~L~~-~G~~ 86 (104)
T PRK10287 79 ILSE-MGYT 86 (104)
T ss_pred HHHH-cCCC
Confidence 4433 4654
No 117
>CHL00101 trpG anthranilate synthase component 2
Probab=82.81 E-value=2.6 Score=43.01 Aligned_cols=75 Identities=15% Similarity=0.155 Sum_probs=45.7
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchhHHH-
Q 003509 693 VLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVILH- 770 (814)
Q Consensus 693 VlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGTILr- 770 (814)
|+|+-+.+.- +..|+++|.+ .|+++.+.+... .+..++ ....|.||+.||.|..-.
T Consensus 2 iliid~~dsf----t~~l~~~l~~-~g~~~~v~~~~~-----------------~~~~~~~~~~~dgiiisgGpg~~~~~ 59 (190)
T CHL00101 2 ILIIDNYDSF----TYNLVQSLGE-LNSDVLVCRNDE-----------------IDLSKIKNLNIRHIIISPGPGHPRDS 59 (190)
T ss_pred EEEEECCCch----HHHHHHHHHh-cCCCEEEEECCC-----------------CCHHHHhhCCCCEEEECCCCCChHHC
Confidence 5666655542 2447778877 788876643210 011111 135899999999998633
Q ss_pred ----HHhhhcCCCCcEEEEeCCC
Q 003509 771 ----ASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 771 ----AArlf~~s~~PILGINlGr 789 (814)
.........+|||||-+|.
T Consensus 60 ~~~~~i~~~~~~~~PiLGIClG~ 82 (190)
T CHL00101 60 GISLDVISSYAPYIPILGVCLGH 82 (190)
T ss_pred cchHHHHHHhcCCCcEEEEchhH
Confidence 2222234689999999984
No 118
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=82.73 E-value=4.1 Score=37.17 Aligned_cols=79 Identities=11% Similarity=0.119 Sum_probs=44.2
Q ss_pred CCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 003509 274 QVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 353 (814)
Q Consensus 274 qpT~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d~~~~PVLVH 353 (814)
.++++++..+.+.+=-+|||+|++. + +. .-...| -+++|. ..+..++..+ ..+.|++|+
T Consensus 6 ~is~~el~~~l~~~~~~ivDvR~~~-e---~~-----~ghi~g--A~~ip~--------~~l~~~~~~~--~~~~~ivv~ 64 (108)
T PRK00162 6 CINVEQAHQKLQEGGAVLVDIRDPQ-S---FA-----MGHAPG--AFHLTN--------DSLGAFMRQA--DFDTPVMVM 64 (108)
T ss_pred ccCHHHHHHHHHcCCCEEEEcCCHH-H---Hh-----cCCCCC--CeECCH--------HHHHHHHHhc--CCCCCEEEE
Confidence 3577777665544335799999875 1 10 011122 233443 2444555444 356799999
Q ss_pred CccCCChHHHHHHHHHHhCCCC
Q 003509 354 SKEGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 354 CtAGKDRTGal~aLLl~l~GV~ 375 (814)
|..|. |+..++..+. ..|.+
T Consensus 65 c~~g~-~s~~a~~~L~-~~G~~ 84 (108)
T PRK00162 65 CYHGN-SSQGAAQYLL-QQGFD 84 (108)
T ss_pred eCCCC-CHHHHHHHHH-HCCch
Confidence 99998 7654443333 34654
No 119
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=82.70 E-value=1.3 Score=49.35 Aligned_cols=43 Identities=28% Similarity=0.445 Sum_probs=32.9
Q ss_pred CcccEEEEEcCchhHHHHHhhhcCCCCcEEEEeC-------C---CcccCCCCC
Q 003509 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHP 797 (814)
Q Consensus 754 ~~vDLVIvLGGDGTILrAArlf~~s~~PILGINl-------G---rLGFLTe~~ 797 (814)
.++|.+|+||||||+-.|.++. ...+||+||-. | ++||-|-.+
T Consensus 91 ~~Id~Li~IGGdgs~~~a~~L~-e~~i~vigiPkTIDNDi~gtd~t~Gf~TA~~ 143 (317)
T cd00763 91 HGIDALVVIGGDGSYMGAMRLT-EHGFPCVGLPGTIDNDIPGTDYTIGFDTALN 143 (317)
T ss_pred cCCCEEEEECCchHHHHHHHHH-HcCCCEEEecccccCCCCCCccCCCHHHHHH
Confidence 4799999999999987776654 45799999942 3 588877643
No 120
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=82.25 E-value=3.9 Score=37.99 Aligned_cols=69 Identities=13% Similarity=0.181 Sum_probs=39.3
Q ss_pred cCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHH
Q 003509 286 KGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMV 365 (814)
Q Consensus 286 lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d~~~~PVLVHCtAGKDRTGal~ 365 (814)
.--+.+||.|+.+ + +. .....| -+++|.. .+...+..+....+.||+++|..|. |+...+
T Consensus 16 ~~~~~lIDvR~~~-e---f~-----~ghIpg--Ainip~~--------~l~~~l~~~~~~~~~~vvlyC~~G~-rS~~aa 75 (101)
T TIGR02981 16 FAAEHWIDVRIPE-Q---YQ-----QEHIQG--AINIPLK--------EIKEHIATAVPDKNDTVKLYCNAGR-QSGMAK 75 (101)
T ss_pred ccCCEEEECCCHH-H---Hh-----cCCCCC--CEECCHH--------HHHHHHHHhCCCCCCeEEEEeCCCH-HHHHHH
Confidence 3557899999975 1 10 011122 2455542 3333333222234578999999998 888666
Q ss_pred HHHHHhCCCC
Q 003509 366 SRWRQYMARC 375 (814)
Q Consensus 366 aLLl~l~GV~ 375 (814)
..+.. +|.+
T Consensus 76 ~~L~~-~G~~ 84 (101)
T TIGR02981 76 DILLD-MGYT 84 (101)
T ss_pred HHHHH-cCCC
Confidence 55544 4654
No 121
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=82.24 E-value=2.9 Score=42.63 Aligned_cols=74 Identities=12% Similarity=0.149 Sum_probs=45.6
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchhHHH-
Q 003509 693 VLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVILH- 770 (814)
Q Consensus 693 VlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGTILr- 770 (814)
|+||-+.+. .+..++++|.+ .|..+.+.+.... +.+++ ....|.||..||-|+.-.
T Consensus 2 il~id~~ds----ft~~~~~~l~~-~g~~v~v~~~~~~-----------------~~~~~~~~~~d~iilsgGpg~p~~~ 59 (188)
T TIGR00566 2 VLMIDNYDS----FTYNLVQYFCE-LGAEVVVKRNDSL-----------------TLQEIEALLPLLIVISPGPCTPNEA 59 (188)
T ss_pred EEEEECCcC----HHHHHHHHHHH-cCCceEEEECCCC-----------------CHHHHHhcCCCEEEEcCCCCChhhc
Confidence 566666654 24557777776 5777766442110 01111 125788999999988643
Q ss_pred -----HHhhhcCCCCcEEEEeCCC
Q 003509 771 -----ASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 771 -----AArlf~~s~~PILGINlGr 789 (814)
..+.+ ...+|||||-+|.
T Consensus 60 ~~~~~~i~~~-~~~~PvLGIC~G~ 82 (188)
T TIGR00566 60 GISLEAIRHF-AGKLPILGVCLGH 82 (188)
T ss_pred chhHHHHHHh-ccCCCEEEECHHH
Confidence 34444 4589999998874
No 122
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=81.80 E-value=6.4 Score=37.41 Aligned_cols=86 Identities=13% Similarity=0.121 Sum_probs=47.0
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCC----------CC------------H
Q 003509 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTA----------PT------------M 332 (814)
Q Consensus 275 pT~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~----------ps------------~ 332 (814)
++++++..+.+.++ .|||.|++. |- . .-...|. +|+|+..... .. .
T Consensus 1 ~s~~el~~~l~~~~-~iiDvR~~~-e~---~-----~ghIpgA--inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (128)
T cd01520 1 ITAEDLLALRKADG-PLIDVRSPK-EF---F-----EGHLPGA--INLPLLDDEERALVGTLYKQQGREAAIELGLELVS 68 (128)
T ss_pred CCHHHHHHHHhcCC-EEEECCCHH-Hh---c-----cCcCCCc--EEccCCChhHHHHhhhheeccCHHHHHHHHHHHHh
Confidence 35677776655554 799999875 21 1 0112333 5677752210 00 0
Q ss_pred HHHHHHHHHHh---cCCCCcEEEeCc-cCCChHHHHHHHHHHhCCC
Q 003509 333 EQVEKFASLVS---NSSKKPLYLHSK-EGVWRTYAMVSRWRQYMAR 374 (814)
Q Consensus 333 e~v~~fleiL~---d~~~~PVLVHCt-AGKDRTGal~aLLl~l~GV 374 (814)
+.++++++.+. -..+.+|+++|. +|. |+..++.++ ..+|.
T Consensus 69 ~~~~~~~~~~~~~~i~~~~~vvvyC~~~G~-rs~~a~~~L-~~~G~ 112 (128)
T cd01520 69 GKLKRILNEAWEARLERDPKLLIYCARGGM-RSQSLAWLL-ESLGI 112 (128)
T ss_pred hhHHHHHHHHHHhccCCCCeEEEEeCCCCc-cHHHHHHHH-HHcCC
Confidence 22334444331 235679999997 566 888666444 44676
No 123
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=81.70 E-value=1.4 Score=51.49 Aligned_cols=113 Identities=18% Similarity=0.192 Sum_probs=64.3
Q ss_pred hhcccccCCEEEEEecCCc-h-HHHHHHHHHHHHhcCCC-eEEEEccchh-hHh---------------hcCCCCcccee
Q 003509 683 MLMWKTTPRTVLVLKKPGP-A-LMEEAKEVASFLYHQEK-MNILVEPDVH-DIF---------------ARIPGFGFVQT 743 (814)
Q Consensus 683 ~l~w~~~~kkVlIV~K~~~-e-a~~~a~eLi~~L~e~~G-i~V~ve~~~a-~~l---------------~~~p~~~~v~~ 743 (814)
.+-++....+|+|++--+. . .-..++.++..+....+ .+|+--..-. ..+ ...++. .+.+
T Consensus 80 ~~~f~p~~~~iaIvT~GG~~PGlN~vIr~iv~~~~~~~~v~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGT-iLGT 158 (459)
T PTZ00286 80 HLYFNPKEVKAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTIYGAKYGYKGLYKEDWIKLDPKDVKTIHRLGGT-ILGS 158 (459)
T ss_pred eEEEcccccEEEEECCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHhcCCCeEECCHHHhhhHHhCCCc-eecc
Confidence 4556667789999999887 4 34455677777653223 4554322211 111 011110 0000
Q ss_pred e-eccCcccc-----cCcccEEEEEcCchhHHHHHhhhc-----CCCCcEEEEeC----------CCcccCCCC
Q 003509 744 F-YLQDTSDL-----HERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------GSLGFLTSH 796 (814)
Q Consensus 744 ~-~~~~~~~l-----~~~vDLVIvLGGDGTILrAArlf~-----~s~~PILGINl----------GrLGFLTe~ 796 (814)
- ...+...+ .-++|.+++||||||+-.|..+.. ...+||+||-. =++||-|.+
T Consensus 159 SR~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~GFdTAv 232 (459)
T PTZ00286 159 SRGGFDPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAV 232 (459)
T ss_pred CCChhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcccCcCchHHH
Confidence 0 00111111 247999999999999988877665 25699999942 267887764
No 124
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=81.69 E-value=4.6 Score=35.62 Aligned_cols=75 Identities=17% Similarity=0.238 Sum_probs=42.8
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCc
Q 003509 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSK 355 (814)
Q Consensus 276 T~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d~~~~PVLVHCt 355 (814)
+++++..+.+.++ .|||+|+.+ + +. .-...| .+++|.. .+...+..+ ..+.|++++|.
T Consensus 2 ~~~e~~~~~~~~~-~iiD~R~~~-~---~~-----~~hipg--A~~ip~~--------~~~~~~~~~--~~~~~vvl~c~ 59 (90)
T cd01524 2 QWHELDNYRADGV-TLIDVRTPQ-E---FE-----KGHIKG--AINIPLD--------ELRDRLNEL--PKDKEIIVYCA 59 (90)
T ss_pred CHHHHHHHhcCCC-EEEECCCHH-H---Hh-----cCCCCC--CEeCCHH--------HHHHHHHhc--CCCCcEEEEcC
Confidence 5677777776665 599999875 1 11 001122 2445532 333333333 34579999999
Q ss_pred cCCChHHHHHHHHHHhCCC
Q 003509 356 EGVWRTYAMVSRWRQYMAR 374 (814)
Q Consensus 356 AGKDRTGal~aLLl~l~GV 374 (814)
.|. |...++..++ .+|.
T Consensus 60 ~g~-~a~~~a~~L~-~~G~ 76 (90)
T cd01524 60 VGL-RGYIAARILT-QNGF 76 (90)
T ss_pred CCh-hHHHHHHHHH-HCCC
Confidence 987 6665544443 3454
No 125
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=81.64 E-value=2.6 Score=42.86 Aligned_cols=74 Identities=12% Similarity=0.203 Sum_probs=46.1
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchhH---
Q 003509 693 VLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI--- 768 (814)
Q Consensus 693 VlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGTI--- 768 (814)
|+||-+.+. .+..|+++|.+ .|.+|.+..... .+.+++ ....|.||..||.|+.
T Consensus 2 il~id~~ds----f~~nl~~~l~~-~~~~~~v~~~~~-----------------~~~~~~~~~~~~~iilsgGP~~~~~~ 59 (191)
T PRK06774 2 LLLIDNYDS----FTYNLYQYFCE-LGTEVMVKRNDE-----------------LQLTDIEQLAPSHLVISPGPCTPNEA 59 (191)
T ss_pred EEEEECCCc----hHHHHHHHHHH-CCCcEEEEeCCC-----------------CCHHHHHhcCCCeEEEcCCCCChHhC
Confidence 666666654 24567777776 677776543210 011122 1257999999999984
Q ss_pred ---HHHHhhhcCCCCcEEEEeCCC
Q 003509 769 ---LHASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 769 ---LrAArlf~~s~~PILGINlGr 789 (814)
+...+.+ ...+|||||=+|.
T Consensus 60 ~~~~~~i~~~-~~~~PiLGIC~G~ 82 (191)
T PRK06774 60 GISLAVIRHF-ADKLPILGVCLGH 82 (191)
T ss_pred CCchHHHHHh-cCCCCEEEECHHH
Confidence 3334444 3589999998863
No 126
>PRK14072 6-phosphofructokinase; Provisional
Probab=81.59 E-value=1.3 Score=50.86 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=33.0
Q ss_pred CcccEEEEEcCchhHHHHHhhhc-----CCCCcEEEEeC----------CCcccCCCC
Q 003509 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------GSLGFLTSH 796 (814)
Q Consensus 754 ~~vDLVIvLGGDGTILrAArlf~-----~s~~PILGINl----------GrLGFLTe~ 796 (814)
-++|.+|+||||||+=.|.++.. .+.+||+||-. -++||-|-.
T Consensus 102 ~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD~t~GF~TA~ 159 (416)
T PRK14072 102 HDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCPGFGSAA 159 (416)
T ss_pred cCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCCCCCChHHHH
Confidence 37999999999999988877654 34599999942 357777653
No 127
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=81.55 E-value=4.9 Score=37.73 Aligned_cols=86 Identities=16% Similarity=0.303 Sum_probs=46.0
Q ss_pred CCCHhhHHHHHHcCC-cEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHH--HHHHHhcCCCCcE
Q 003509 274 QVTEEGLKWLMEKGY-KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEK--FASLVSNSSKKPL 350 (814)
Q Consensus 274 qpT~eDla~L~~lGI-KTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~--fleiL~d~~~~PV 350 (814)
.++++++..+.+.+- -.|||+|++. +-. .....| -+++|....... ...+.. +.... ...++|+
T Consensus 9 ~is~~el~~~~~~~~~~~ivDvR~~~-e~~--------~~hIpg--ai~ip~~~~~~~-~~~~~~~~~~~~~-~~~~~~i 75 (122)
T cd01526 9 RVSVKDYKNILQAGKKHVLLDVRPKV-HFE--------ICRLPE--AINIPLSELLSK-AAELKSLQELPLD-NDKDSPI 75 (122)
T ss_pred ccCHHHHHHHHhCCCCeEEEEcCCHH-Hhh--------cccCCC--CeEccHHHHhhh-hhhhhhhhhcccc-cCCCCcE
Confidence 578888887776633 3599999986 211 011223 345665321100 000100 01111 1457899
Q ss_pred EEeCccCCChHHHHHHHHHHhCCC
Q 003509 351 YLHSKEGVWRTYAMVSRWRQYMAR 374 (814)
Q Consensus 351 LVHCtAGKDRTGal~aLLl~l~GV 374 (814)
+++|.+|. |+...+..+.. .|.
T Consensus 76 vv~C~~G~-rs~~aa~~L~~-~G~ 97 (122)
T cd01526 76 YVVCRRGN-DSQTAVRKLKE-LGL 97 (122)
T ss_pred EEECCCCC-cHHHHHHHHHH-cCC
Confidence 99999997 87755544433 576
No 128
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=81.52 E-value=4.9 Score=38.13 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=19.2
Q ss_pred CCCCcEEEeCc-cCCChHHHHHHHHHH
Q 003509 345 SSKKPLYLHSK-EGVWRTYAMVSRWRQ 370 (814)
Q Consensus 345 ~~~~PVLVHCt-AGKDRTGal~aLLl~ 370 (814)
..+.+|+|||. +|. |+..++..+..
T Consensus 66 ~~~~~vv~yC~~sg~-rs~~aa~~L~~ 91 (121)
T cd01530 66 KKRRVLIFHCEFSSK-RGPRMARHLRN 91 (121)
T ss_pred CCCCEEEEECCCccc-cHHHHHHHHHH
Confidence 35689999997 887 98877666654
No 129
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.72 E-value=2.1 Score=50.96 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=18.2
Q ss_pred CCCCcEEEeCccCCChHHHHHH
Q 003509 345 SSKKPLYLHSKEGVWRTYAMVS 366 (814)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGal~a 366 (814)
....||||||+-|.|||.-+++
T Consensus 372 ~~~~sVlVHCSDGWDRT~Qlvs 393 (717)
T KOG4471|consen 372 SESRSVLVHCSDGWDRTAQLVS 393 (717)
T ss_pred cCCceEEEEcCCCccchHHHHH
Confidence 5678999999999999994433
No 130
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=80.36 E-value=2.1 Score=48.19 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=22.8
Q ss_pred HHHHhcCCCCcEEEeCccCCChHHHHHHHHHH
Q 003509 339 ASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQ 370 (814)
Q Consensus 339 leiL~d~~~~PVLVHCtAGKDRTGal~aLLl~ 370 (814)
++.+ ...+.+|||||..|.|||..+.+|...
T Consensus 224 ~~~l-~~~~~~Vlvh~~dGwDrt~q~~sL~ql 254 (353)
T PF06602_consen 224 ADLL-HDEGSSVLVHCSDGWDRTSQLSSLAQL 254 (353)
T ss_dssp HHHH-HTT--EEEEECTTSSSHHHHHHHHHHH
T ss_pred HHHh-hccCceEEEEcCCCCcccHHHHHHHHH
Confidence 3444 246779999999999999988887755
No 131
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=80.30 E-value=2 Score=43.27 Aligned_cols=65 Identities=12% Similarity=0.074 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHH-----HHHhhhcCCCCcE
Q 003509 708 KEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL-----HASNLFRGAVPPV 782 (814)
Q Consensus 708 ~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTIL-----rAArlf~~s~~PI 782 (814)
..+.++|++ .|+.+.+.+..... ....+ ...+|.||+.||.|+.. ...+......+||
T Consensus 12 ~~~~~~l~~-~G~~~~~~~~~~~~---------------~~~~~-~~~~dgvil~gG~~~~~~~~~~~~i~~~~~~~~Pv 74 (184)
T cd01743 12 YNLVQYLRE-LGAEVVVVRNDEIT---------------LEELE-LLNPDAIVISPGPGHPEDAGISLEIIRALAGKVPI 74 (184)
T ss_pred HHHHHHHHH-cCCceEEEeCCCCC---------------HHHHh-hcCCCEEEECCCCCCcccchhHHHHHHHHhcCCCE
Confidence 446677777 68887654321100 00012 25689999999999843 3344333457999
Q ss_pred EEEeCCC
Q 003509 783 ISFNLGS 789 (814)
Q Consensus 783 LGINlGr 789 (814)
|||-+|.
T Consensus 75 lGIC~G~ 81 (184)
T cd01743 75 LGVCLGH 81 (184)
T ss_pred EEECHhH
Confidence 9999873
No 132
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=80.26 E-value=1.6 Score=50.65 Aligned_cols=113 Identities=19% Similarity=0.247 Sum_probs=65.2
Q ss_pred hhcccccCCEEEEEecCCc-h-HHHHHHHHHHHHhcCCC-eEEEEccc-hhhHhh------------------cCCCCcc
Q 003509 683 MLMWKTTPRTVLVLKKPGP-A-LMEEAKEVASFLYHQEK-MNILVEPD-VHDIFA------------------RIPGFGF 740 (814)
Q Consensus 683 ~l~w~~~~kkVlIV~K~~~-e-a~~~a~eLi~~L~e~~G-i~V~ve~~-~a~~l~------------------~~p~~~~ 740 (814)
.+-++....+|+|++--+. . .-..++.++..+....| .+|+--.. ....+. ..++. .
T Consensus 73 ~i~f~p~~~riaIvtsGG~~PGmN~vIr~iv~~a~~~~gv~~V~Gi~~Gy~GL~~~~~~~~~~Lt~~~v~~i~~~GGT-i 151 (443)
T PRK06830 73 KIYFDPSKVKAAIVTCGGLCPGLNDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVELTPEVVADIHEFGGT-I 151 (443)
T ss_pred eeEEcCcccEEEEECCCCCchHHHHHHHHHHHHHHHhCCCeEEEEEccCHHHHhhccCCCEEECCHHHHhhHHhCCCc-c
Confidence 4556777789999999887 4 34456777776654234 56654333 111111 00110 0
Q ss_pred ceee-eccCcccc-----cCcccEEEEEcCchhHHHHHhhhc-----CCCCcEEEEeC-------C---CcccCCCC
Q 003509 741 VQTF-YLQDTSDL-----HERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL-------G---SLGFLTSH 796 (814)
Q Consensus 741 v~~~-~~~~~~~l-----~~~vDLVIvLGGDGTILrAArlf~-----~s~~PILGINl-------G---rLGFLTe~ 796 (814)
+.+- ...+.+.+ ..++|.+++||||||+=.|.++.. ...+||+||-. | ++||-|.+
T Consensus 152 LGTsR~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~S~GFdTAv 228 (443)
T PRK06830 152 LGSSRGPQDPEEIVDTLERMNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFETAV 228 (443)
T ss_pred ccCCCCchhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcccCCCHHHHH
Confidence 0000 00011111 247999999999999988877654 35699999942 2 57776653
No 133
>PRK07053 glutamine amidotransferase; Provisional
Probab=79.94 E-value=4.4 Score=43.01 Aligned_cols=81 Identities=16% Similarity=0.080 Sum_probs=48.4
Q ss_pred cCCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchh-
Q 003509 689 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV- 767 (814)
Q Consensus 689 ~~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGT- 767 (814)
+|++|+||-+...+-. -.|.++|.+ .|+.+.+-...... ....+ ..++|.+|+.||-..
T Consensus 1 ~m~~ilviqh~~~e~~---g~i~~~L~~-~g~~~~v~~~~~~~---------------~~~~~-~~~~d~lii~Ggp~~~ 60 (234)
T PRK07053 1 MMKTAVAIRHVAFEDL---GSFEQVLGA-RGYRVRYVDVGVDD---------------LETLD-ALEPDLLVVLGGPIGV 60 (234)
T ss_pred CCceEEEEECCCCCCC---hHHHHHHHH-CCCeEEEEecCCCc---------------cCCCC-ccCCCEEEECCCCCCC
Confidence 4778999988776322 226777776 67766542211100 00111 246899999997542
Q ss_pred -----------HHHHHhhhcCCCCcEEEEeCCC
Q 003509 768 -----------ILHASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 768 -----------ILrAArlf~~s~~PILGINlGr 789 (814)
++...+.+...++|||||-+|.
T Consensus 61 ~d~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~ 93 (234)
T PRK07053 61 YDDELYPFLAPEIALLRQRLAAGLPTLGICLGA 93 (234)
T ss_pred CCCCcCCcHHHHHHHHHHHHHCCCCEEEECccH
Confidence 2334444455689999998874
No 134
>PLN02564 6-phosphofructokinase
Probab=78.59 E-value=2 Score=50.46 Aligned_cols=123 Identities=20% Similarity=0.176 Sum_probs=66.6
Q ss_pred hhcccccCCEEEEEecCCc-h-HHHHHHHHHHHHhcCCC-eEEEEccchhh-Hh---------------hcCCCCcccee
Q 003509 683 MLMWKTTPRTVLVLKKPGP-A-LMEEAKEVASFLYHQEK-MNILVEPDVHD-IF---------------ARIPGFGFVQT 743 (814)
Q Consensus 683 ~l~w~~~~kkVlIV~K~~~-e-a~~~a~eLi~~L~e~~G-i~V~ve~~~a~-~l---------------~~~p~~~~v~~ 743 (814)
.+-++....+|+|++--++ . .-...+.++..+....| .+|+--..-.+ .+ ...++. .+.+
T Consensus 80 ~i~f~p~~~riaIlTsGGd~PGmNavIRavv~~l~~~yg~~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGT-iLGT 158 (484)
T PLN02564 80 KVYFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSRNTIPLTPKVVNDIHKRGGT-ILGT 158 (484)
T ss_pred eEEEcCcceEEEEECCCCCCccHhHHHHHHHHHHHHhCCCeEEEEEccChHHhCCCCeEeCCHHHhhcHhhCCCc-eecc
Confidence 4556777789999999887 3 44455666666653224 45543222111 11 001110 0000
Q ss_pred ee-ccCcccc-----cCcccEEEEEcCchhHHHHHhhhc-----CCCCcEEEEeC-------C---CcccCCCCCcccHH
Q 003509 744 FY-LQDTSDL-----HERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL-------G---SLGFLTSHPVSSYL 802 (814)
Q Consensus 744 ~~-~~~~~~l-----~~~vDLVIvLGGDGTILrAArlf~-----~s~~PILGINl-------G---rLGFLTe~~~dei~ 802 (814)
-. ..+...+ .-++|.+|+||||||+-.|..+.. ...++|+||-. | ++||-|.++ .+.
T Consensus 159 sR~~~~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~GFdTAv~--~~~ 236 (484)
T PLN02564 159 SRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE--EAQ 236 (484)
T ss_pred CCCcchHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCCHHHHHH--HHH
Confidence 00 0011111 237999999999999988877755 23456999943 2 577766533 344
Q ss_pred HHHhhh
Q 003509 803 NSLCFL 808 (814)
Q Consensus 803 eaLe~L 808 (814)
+++++|
T Consensus 237 ~aI~~i 242 (484)
T PLN02564 237 RAINAA 242 (484)
T ss_pred HHHHHH
Confidence 444443
No 135
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=78.33 E-value=8 Score=41.76 Aligned_cols=43 Identities=14% Similarity=0.103 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHHHHhCCCC
Q 003509 331 TMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 331 s~e~v~~fleiL~d~~~~PVLVHCtAGKDRTGal~aLLl~l~GV~ 375 (814)
+.+.+++++...--..++||+++|..|. |+..++.++. .+|..
T Consensus 215 ~~~~l~~~~~~~g~~~~~~ii~yC~~G~-~A~~~~~~l~-~~G~~ 257 (281)
T PRK11493 215 TTDELDAIFFGRGVSFDRPIIASCGSGV-TAAVVVLALA-TLDVP 257 (281)
T ss_pred CHHHHHHHHHhcCCCCCCCEEEECCcHH-HHHHHHHHHH-HcCCC
Confidence 3455655554321235679999999999 8876655554 56775
No 136
>PRK03202 6-phosphofructokinase; Provisional
Probab=77.13 E-value=2.3 Score=47.38 Aligned_cols=104 Identities=22% Similarity=0.278 Sum_probs=60.8
Q ss_pred CCEEEEEecCCc-hHH-HHHHHHHHHHhcCCCeEEEEccchhh-H---------------hhcCCCCccceeeeccC---
Q 003509 690 PRTVLVLKKPGP-ALM-EEAKEVASFLYHQEKMNILVEPDVHD-I---------------FARIPGFGFVQTFYLQD--- 748 (814)
Q Consensus 690 ~kkVlIV~K~~~-ea~-~~a~eLi~~L~e~~Gi~V~ve~~~a~-~---------------l~~~p~~~~v~~~~~~~--- 748 (814)
+|+|+|+.--++ .-+ ..++.+++.+.. .|.+|+--.+-.+ . +...++. .+.+-....
T Consensus 1 mk~i~Il~sGG~apG~Na~i~~~~~~~~~-~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs-~LgtsR~~~~~~ 78 (320)
T PRK03202 1 MKRIGVLTSGGDAPGMNAAIRAVVRTAIS-EGLEVYGIYDGYAGLLEGDIVKLDLKSVSDIINRGGT-ILGSARFPEFKD 78 (320)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHHH-CCCeEEEEecChhhhcCCCEEECCHHHHhhHHhCCCc-ccccCCCCCcCC
Confidence 478999988887 433 445778888776 5777765322111 1 1111111 000000000
Q ss_pred ---ccc----c-cCcccEEEEEcCchhHHHHHhhhcCCCCcEEEEeC-------C---CcccCCCC
Q 003509 749 ---TSD----L-HERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSH 796 (814)
Q Consensus 749 ---~~~----l-~~~vDLVIvLGGDGTILrAArlf~~s~~PILGINl-------G---rLGFLTe~ 796 (814)
... + .-++|.+|+||||||+-.|..+. ...+||+||-. | ++||-|..
T Consensus 79 ~~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~-e~~i~vigiPkTIDNDl~gtd~s~Gf~TA~ 143 (320)
T PRK03202 79 EEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLT-EHGIPVIGLPGTIDNDIAGTDYTIGFDTAL 143 (320)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHH-hcCCcEEEecccccCCCCCCccCcCHHHHH
Confidence 000 1 24799999999999998777765 46899999942 3 57776653
No 137
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=77.10 E-value=6.8 Score=43.55 Aligned_cols=84 Identities=12% Similarity=0.132 Sum_probs=49.3
Q ss_pred EcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHH----HHhcCC
Q 003509 271 RGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFAS----LVSNSS 346 (814)
Q Consensus 271 RSGqpT~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fle----iL~d~~ 346 (814)
++..++++++..+.+.+=-+|||.|.+. |-. .-...| -+|+|+.. +..|.. .+....
T Consensus 110 ~~~~is~~el~~~l~~~~~vlIDVR~~~-E~~--------~GhI~G--Ai~ip~~~--------~~~~~~~l~~~~~~~k 170 (314)
T PRK00142 110 VGTYLKPKEVNELLDDPDVVFIDMRNDY-EYE--------IGHFEN--AIEPDIET--------FREFPPWVEENLDPLK 170 (314)
T ss_pred CCcccCHHHHHHHhcCCCeEEEECCCHH-HHh--------cCcCCC--CEeCCHHH--------hhhhHHHHHHhcCCCC
Confidence 3446888888776554435799999875 210 011223 24555542 222222 222235
Q ss_pred CCcEEEeCccCCChHHHHHHHHHHhCCCC
Q 003509 347 KKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 347 ~~PVLVHCtAGKDRTGal~aLLl~l~GV~ 375 (814)
++||++||++|. |....+.+++. .|..
T Consensus 171 dk~IvvyC~~G~-Rs~~aa~~L~~-~Gf~ 197 (314)
T PRK00142 171 DKKVVMYCTGGI-RCEKASAWMKH-EGFK 197 (314)
T ss_pred cCeEEEECCCCc-HHHHHHHHHHH-cCCC
Confidence 689999999998 99876665544 4654
No 138
>PRK05670 anthranilate synthase component II; Provisional
Probab=76.69 E-value=3.1 Score=42.22 Aligned_cols=75 Identities=13% Similarity=0.190 Sum_probs=44.9
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHH---
Q 003509 693 VLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL--- 769 (814)
Q Consensus 693 VlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTIL--- 769 (814)
|+|+-+.+. .+..+.+||.+ .|+++.+-+...... .+... .+.|.||..||-|+.-
T Consensus 2 iliid~~d~----f~~~i~~~l~~-~g~~~~v~~~~~~~~--------------~~~~~--~~~dglIlsgGpg~~~d~~ 60 (189)
T PRK05670 2 ILLIDNYDS----FTYNLVQYLGE-LGAEVVVYRNDEITL--------------EEIEA--LNPDAIVLSPGPGTPAEAG 60 (189)
T ss_pred EEEEECCCc----hHHHHHHHHHH-CCCcEEEEECCCCCH--------------HHHHh--CCCCEEEEcCCCCChHHcc
Confidence 555555432 35678889887 788886643211000 01111 2379999999999862
Q ss_pred ---HHHhhhcCCCCcEEEEeCCC
Q 003509 770 ---HASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 770 ---rAArlf~~s~~PILGINlGr 789 (814)
...+.+ ...+|||||-+|.
T Consensus 61 ~~~~~l~~~-~~~~PvLGIClG~ 82 (189)
T PRK05670 61 ISLELIREF-AGKVPILGVCLGH 82 (189)
T ss_pred hHHHHHHHh-cCCCCEEEECHHH
Confidence 222223 2469999998874
No 139
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=76.51 E-value=8.8 Score=34.08 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=18.2
Q ss_pred CCCcEEEeCccCCChHHHHHHHHHHhCCCC
Q 003509 346 SKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 346 ~~~PVLVHCtAGKDRTGal~aLLl~l~GV~ 375 (814)
.+.||+|||..|. |+-.++..+ ..+|.+
T Consensus 60 ~~~~ivv~c~~g~-~s~~~~~~l-~~~G~~ 87 (103)
T cd01447 60 EDKPFVFYCASGW-RSALAGKTL-QDMGLK 87 (103)
T ss_pred CCCeEEEEcCCCC-cHHHHHHHH-HHcChH
Confidence 4679999999886 765444333 334654
No 140
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=76.06 E-value=7.2 Score=35.01 Aligned_cols=87 Identities=15% Similarity=0.103 Sum_probs=43.5
Q ss_pred CCHhhHHHHHHcC--CcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCC--CCHHHHHHHHHHHhcCCCCcE
Q 003509 275 VTEEGLKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTA--PTMEQVEKFASLVSNSSKKPL 350 (814)
Q Consensus 275 pT~eDla~L~~lG--IKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~--ps~e~v~~fleiL~d~~~~PV 350 (814)
+++++++.+.+.+ --.|||.|+.. + +. .-...|. +++|...... .....+.. ...+....+.+|
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~-e---~~-----~ghIpgA--~~ip~~~~~~~~~~~~~~~~-~~~~~~~~~~~v 68 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSP-D---FR-----RGHIEGS--INIPFSSVFLKEGELEQLPT-VPRLENYKGKII 68 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHH-H---Hh-----CCccCCC--EeCCHHHhcccccccccccc-hHHHHhhcCCeE
Confidence 3567777666553 23789999864 1 11 0122332 4555432110 00000100 011111236799
Q ss_pred EEeCccCCChHHHHHHHHHHhCCCC
Q 003509 351 YLHSKEGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 351 LVHCtAGKDRTGal~aLLl~l~GV~ 375 (814)
+++|..|. |+..++..+. .+|.+
T Consensus 69 v~~c~~g~-~s~~~a~~L~-~~G~~ 91 (105)
T cd01525 69 VIVSHSHK-HAALFAAFLV-KCGVP 91 (105)
T ss_pred EEEeCCCc-cHHHHHHHHH-HcCCC
Confidence 99999998 8775555443 35764
No 141
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=76.05 E-value=5.2 Score=45.01 Aligned_cols=88 Identities=16% Similarity=0.155 Sum_probs=53.6
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchhH
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGTI 768 (814)
.++++||+...-.......++.+.|.+ .|+++.+...+.. .|....+... .... ..++|+||.||| |++
T Consensus 23 ~~r~livt~~~~~~~g~~~~v~~~L~~-~gi~~~~~~~v~~----~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS~ 92 (375)
T cd08194 23 GKRPLIVTDKVMVKLGLVDKLTDSLKK-EGIESAIFDDVVS----EPTDESVEEG----VKLAKEGGCDVIIALGG-GSP 92 (375)
T ss_pred CCeEEEEcCcchhhcchHHHHHHHHHH-CCCeEEEECCCCC----CcCHHHHHHH----HHHHHhcCCCEEEEeCC-chH
Confidence 478999985543323356788899987 6887754322111 1111001000 0011 357999999999 788
Q ss_pred HHHHhhhc-------------------CCCCcEEEEeC
Q 003509 769 LHASNLFR-------------------GAVPPVISFNL 787 (814)
Q Consensus 769 LrAArlf~-------------------~s~~PILGINl 787 (814)
+-+++.++ ...+|++.|.+
T Consensus 93 ~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT 130 (375)
T cd08194 93 IDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPT 130 (375)
T ss_pred HHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECC
Confidence 88888764 34689999975
No 142
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=75.84 E-value=11 Score=42.60 Aligned_cols=28 Identities=11% Similarity=0.025 Sum_probs=20.2
Q ss_pred CCCcEEEeCc-cCCChHHHHHHHHHHhCCCC
Q 003509 346 SKKPLYLHSK-EGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 346 ~~~PVLVHCt-AGKDRTGal~aLLl~l~GV~ 375 (814)
.+.+|+++|. .|. |++.++.++.. +|..
T Consensus 87 ~~~~ivvyC~rgG~-RS~~aa~~L~~-~G~~ 115 (345)
T PRK11784 87 ANPRGLLYCWRGGL-RSGSVQQWLKE-AGID 115 (345)
T ss_pred CCCeEEEEECCCCh-HHHHHHHHHHH-cCCC
Confidence 5679999996 566 99977665544 5763
No 143
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=75.29 E-value=6.7 Score=40.07 Aligned_cols=74 Identities=12% Similarity=0.145 Sum_probs=46.0
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchhHH--
Q 003509 693 VLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVIL-- 769 (814)
Q Consensus 693 VlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGTIL-- 769 (814)
|+||-+.+. ....+++||.+ .|+.+.+-+... .+...+ ..+.|.+|..||.|..-
T Consensus 2 il~id~~ds----ft~~~~~~l~~-~g~~~~~~~~~~-----------------~~~~~~~~~~~~~iilsgGp~~~~~~ 59 (193)
T PRK08857 2 LLMIDNYDS----FTYNLYQYFCE-LGAQVKVVRNDE-----------------IDIDGIEALNPTHLVISPGPCTPNEA 59 (193)
T ss_pred EEEEECCCC----cHHHHHHHHHH-CCCcEEEEECCC-----------------CCHHHHhhCCCCEEEEeCCCCChHHC
Confidence 666766654 23568888887 788876533210 001111 12468999999998753
Q ss_pred ----HHHhhhcCCCCcEEEEeCCC
Q 003509 770 ----HASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 770 ----rAArlf~~s~~PILGINlGr 789 (814)
...+.+ ...+|||||-+|.
T Consensus 60 ~~~~~~i~~~-~~~~PiLGIClG~ 82 (193)
T PRK08857 60 GISLQAIEHF-AGKLPILGVCLGH 82 (193)
T ss_pred cchHHHHHHh-cCCCCEEEEcHHH
Confidence 333333 4589999999884
No 144
>PLN02335 anthranilate synthase
Probab=75.17 E-value=6.2 Score=41.52 Aligned_cols=76 Identities=13% Similarity=0.169 Sum_probs=47.0
Q ss_pred CEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchhH-
Q 003509 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI- 768 (814)
Q Consensus 691 kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGTI- 768 (814)
++|+||=+.+. ....|++||.+ .|+.+.+...-. .+.+++ ..+.|.||..||-|..
T Consensus 19 ~~ilviD~~ds----ft~~i~~~L~~-~g~~~~v~~~~~-----------------~~~~~~~~~~~d~iVisgGPg~p~ 76 (222)
T PLN02335 19 GPIIVIDNYDS----FTYNLCQYMGE-LGCHFEVYRNDE-----------------LTVEELKRKNPRGVLISPGPGTPQ 76 (222)
T ss_pred CcEEEEECCCC----HHHHHHHHHHH-CCCcEEEEECCC-----------------CCHHHHHhcCCCEEEEcCCCCChh
Confidence 48888854443 23458888887 788776643200 011111 2357999999999954
Q ss_pred -----HHHHhhhcCCCCcEEEEeCCC
Q 003509 769 -----LHASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 769 -----LrAArlf~~s~~PILGINlGr 789 (814)
+...+.+ ...+|||||-+|.
T Consensus 77 d~~~~~~~~~~~-~~~~PiLGIClG~ 101 (222)
T PLN02335 77 DSGISLQTVLEL-GPLVPLFGVCMGL 101 (222)
T ss_pred hccchHHHHHHh-CCCCCEEEecHHH
Confidence 3333333 3469999999873
No 145
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=75.07 E-value=2.3 Score=47.60 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=27.4
Q ss_pred CcccEEEEEcCchhHHHHHhhhcC-----CCCcEEEEe
Q 003509 754 ERVDFVACLGGDGVILHASNLFRG-----AVPPVISFN 786 (814)
Q Consensus 754 ~~vDLVIvLGGDGTILrAArlf~~-----s~~PILGIN 786 (814)
.++|.+|+||||||+-.|..+... .++||+||-
T Consensus 91 ~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiP 128 (338)
T cd00363 91 HGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLP 128 (338)
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEee
Confidence 479999999999999888776542 389999995
No 146
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=75.05 E-value=22 Score=35.64 Aligned_cols=98 Identities=9% Similarity=0.108 Sum_probs=47.6
Q ss_pred CCCHhhHHHHHHcCCcEEEEcCCCcccCc-chhhhh----HHhhhcCCcEEEEeec---CCCCCCCHHHHHHHHHHH-hc
Q 003509 274 QVTEEGLKWLMEKGYKTIVDIRAERVKDN-FYEAAI----DDAILSGKVELIKIPV---EVRTAPTMEQVEKFASLV-SN 344 (814)
Q Consensus 274 qpT~eDla~L~~lGIKTVIDLRsee~E~~-~~p~~e----~~~~e~~GI~yVhIPV---~d~~~ps~e~v~~fleiL-~d 344 (814)
.++++++..+.+.+=..|||.|+.+ +.+ .+.... ...-...|- +++|. .....+..+.+.+.+..+ ..
T Consensus 37 ~vs~~el~~~l~~~~~~lIDVR~~~-~~~~e~~~G~~~~~~~~~HIPGA--v~ip~~~~~~l~~~~~~~~~~~l~~~~~~ 113 (162)
T TIGR03865 37 VLDTEAAQALLARGPVALIDVYPRP-PKPKNLLEGTVWRDEPRLNIPGS--LWLPNTGYGNLAPAWQAYFRRGLERATGG 113 (162)
T ss_pred ccCHHHHHHHHhCCCcEEEECCCCc-cccccccccceeccccCCCCCCc--EEecccCCCCCCCchhHHHHHHHHHhcCC
Confidence 5788888877666545699999754 110 000000 000012342 33442 211122222232222211 11
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHhCCCC
Q 003509 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGal~aLLl~l~GV~ 375 (814)
..+.||+++|..|.-|+..++.++. .+|..
T Consensus 114 ~~d~~IVvYC~~G~~~S~~aa~~L~-~~G~~ 143 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNAAKRAL-AYGYS 143 (162)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHH-hcCCc
Confidence 3568999999998756665444443 35654
No 147
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=74.17 E-value=5.6 Score=35.45 Aligned_cols=29 Identities=3% Similarity=-0.079 Sum_probs=20.3
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHhCCCC
Q 003509 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGal~aLLl~l~GV~ 375 (814)
..+.+|+++|..|. |+..++..+ ..+|.+
T Consensus 54 ~~~~~ivv~c~~g~-~s~~~~~~l-~~~G~~ 82 (96)
T cd01529 54 GRATRYVLTCDGSL-LARFAAQEL-LALGGK 82 (96)
T ss_pred CCCCCEEEEeCChH-HHHHHHHHH-HHcCCC
Confidence 45679999999887 887655544 345764
No 148
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=72.18 E-value=6.7 Score=44.10 Aligned_cols=88 Identities=22% Similarity=0.224 Sum_probs=53.1
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchhH
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGTI 768 (814)
.++++|++...-.....+.++...|.+ .|+++.+...+.. .|....+... .... ..++|+||.||| |++
T Consensus 26 ~~~~livt~~~~~~~~~~~~v~~~L~~-~~~~~~~~~~v~~----~p~~~~v~~~----~~~~~~~~~D~IIaiGG-Gs~ 95 (376)
T cd08193 26 AKRVLVVTDPGILKAGLIDPLLASLEA-AGIEVTVFDDVEA----DPPEAVVEAA----VEAARAAGADGVIGFGG-GSS 95 (376)
T ss_pred CCeEEEEcCcchhhCccHHHHHHHHHH-cCCeEEEECCCCC----CcCHHHHHHH----HHHHHhcCCCEEEEeCC-chH
Confidence 478999986542233456778888876 6877754322111 1111111000 0011 248999999999 888
Q ss_pred HHHHhhhcC-------------------CCCcEEEEeC
Q 003509 769 LHASNLFRG-------------------AVPPVISFNL 787 (814)
Q Consensus 769 LrAArlf~~-------------------s~~PILGINl 787 (814)
+-+++.++- ..+|++.|.+
T Consensus 96 iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPT 133 (376)
T cd08193 96 MDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPT 133 (376)
T ss_pred HHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCC
Confidence 888877542 3689999975
No 149
>PRK06490 glutamine amidotransferase; Provisional
Probab=72.07 E-value=8.9 Score=40.88 Aligned_cols=80 Identities=15% Similarity=0.110 Sum_probs=47.1
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhH-
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI- 768 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTI- 768 (814)
+++|+|+-+...+-. ..+.+||.+ .|.++.+-....+ ....+-..++|.+|+.||=++.
T Consensus 7 ~~~vlvi~h~~~~~~---g~l~~~l~~-~g~~~~v~~~~~~----------------~~~p~~l~~~dgvii~Ggp~~~~ 66 (239)
T PRK06490 7 KRPVLIVLHQERSTP---GRVGQLLQE-RGYPLDIRRPRLG----------------DPLPDTLEDHAGAVIFGGPMSAN 66 (239)
T ss_pred CceEEEEecCCCCCC---hHHHHHHHH-CCCceEEEeccCC----------------CCCCCcccccCEEEEECCCCCCC
Confidence 568888887775322 235666666 6766654221100 0011112468999999998753
Q ss_pred ------H---HHHhhhcCCCCcEEEEeCCC
Q 003509 769 ------L---HASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 769 ------L---rAArlf~~s~~PILGINlGr 789 (814)
. ...+.+....+|||||-+|+
T Consensus 67 d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~ 96 (239)
T PRK06490 67 DPDDFIRREIDWISVPLKENKPFLGICLGA 96 (239)
T ss_pred CCchHHHHHHHHHHHHHHCCCCEEEECHhH
Confidence 2 22333345689999998874
No 150
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=70.72 E-value=15 Score=40.60 Aligned_cols=93 Identities=14% Similarity=0.075 Sum_probs=50.5
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCc-EEEEeecCC-----CCCCCHHHHHHHHHHHhcCCCCc
Q 003509 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKV-ELIKIPVEV-----RTAPTMEQVEKFASLVSNSSKKP 349 (814)
Q Consensus 276 T~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI-~yVhIPV~d-----~~~ps~e~v~~fleiL~d~~~~P 349 (814)
+.+.++...+.+-+.|||-|+.+ +-.... .+........| --+++|..+ ..-.+.+.++.|.+..--..+++
T Consensus 159 ~~~~~~~~~~~~~~~liDaR~~~-rf~G~~-~ep~~~~~GHIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~~~~ 236 (285)
T COG2897 159 DATLVADALEVPAVLLIDARSPE-RFRGKE-PEPRDGKAGHIPGAINIPWTDLVDDGGLFKSPEEIARLYADAGIDPDKE 236 (285)
T ss_pred CHHHHHHHhcCCCeEEEecCCHH-HhCCCC-CCCCCCCCCCCCCCcCcCHHHHhcCCCccCcHHHHHHHHHhcCCCCCCC
Confidence 55667777777677799999996 211100 00000011111 122333211 11234566677665432256789
Q ss_pred EEEeCccCCChHHHHHHHHHHh
Q 003509 350 LYLHSKEGVWRTYAMVSRWRQY 371 (814)
Q Consensus 350 VLVHCtAGKDRTGal~aLLl~l 371 (814)
|+++|..|. |+.+.+..+..+
T Consensus 237 vI~yCgsG~-~As~~~~al~~l 257 (285)
T COG2897 237 VIVYCGSGV-RASVTWLALAEL 257 (285)
T ss_pred EEEEcCCch-HHHHHHHHHHHh
Confidence 999999999 888766655553
No 151
>PRK05380 pyrG CTP synthetase; Validated
Probab=70.70 E-value=10 Score=45.17 Aligned_cols=86 Identities=16% Similarity=0.129 Sum_probs=48.6
Q ss_pred CEEEEEecCCc--hHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCch--
Q 003509 691 RTVLVLKKPGP--ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG-- 766 (814)
Q Consensus 691 kkVlIV~K~~~--ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDG-- 766 (814)
-+|+||+|... ++...+.+-........+.+|.+.---+..+.. ....+....+|-||.-||=|
T Consensus 289 v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~------------~~~~~~L~~~DGIIlpGGfG~~ 356 (533)
T PRK05380 289 VTIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEE------------ENVAELLKGVDGILVPGGFGER 356 (533)
T ss_pred eEEEEEeCccCCcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccC------------cchhhHhhcCCEEEecCCCCcc
Confidence 48999999875 454444433333322245444321111111110 00112346789999999843
Q ss_pred ---hHHHHHhhhcCCCCcEEEEeCC
Q 003509 767 ---VILHASNLFRGAVPPVISFNLG 788 (814)
Q Consensus 767 ---TILrAArlf~~s~~PILGINlG 788 (814)
-.+.+++.+...++|+|||-+|
T Consensus 357 ~~~g~i~~i~~a~e~~iPiLGIClG 381 (533)
T PRK05380 357 GIEGKILAIRYARENNIPFLGICLG 381 (533)
T ss_pred ccccHHHHHHHHHHCCCcEEEEchH
Confidence 3456777777789999999875
No 152
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=70.60 E-value=7 Score=44.05 Aligned_cols=88 Identities=17% Similarity=0.295 Sum_probs=53.2
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchhH
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGTI 768 (814)
.++++||+...-.......++.+.|.+ .|+++.+...+.. .|....+... .... ..++|+||.||| |++
T Consensus 28 ~~~~lvv~~~~~~~~~~~~~v~~~L~~-~~~~~~~f~~v~~----~p~~~~v~~~----~~~~~~~~~D~IIavGG-GS~ 97 (377)
T cd08176 28 FKKALIVTDKGLVKIGVVEKVTDVLDE-AGIDYVIYDGVKP----NPTITNVKDG----LAVFKKEGCDFIISIGG-GSP 97 (377)
T ss_pred CCeEEEECCchHhhcCcHHHHHHHHHH-cCCeEEEeCCCCC----CCCHHHHHHH----HHHHHhcCCCEEEEeCC-cHH
Confidence 378999986543223467788889886 6877754332111 1111001000 0011 247999999999 788
Q ss_pred HHHHhhhc-------------------CCCCcEEEEeC
Q 003509 769 LHASNLFR-------------------GAVPPVISFNL 787 (814)
Q Consensus 769 LrAArlf~-------------------~s~~PILGINl 787 (814)
+-+++.++ ...+|++.|-+
T Consensus 98 iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT 135 (377)
T cd08176 98 HDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINT 135 (377)
T ss_pred HHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCC
Confidence 88887653 24689999975
No 153
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=70.43 E-value=10 Score=43.09 Aligned_cols=88 Identities=18% Similarity=0.139 Sum_probs=52.6
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchhH
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGTI 768 (814)
.++++||+-..-.....+.++.+.|++ .|+.+.+...+.. .|....+... .+.. ..++|+||.||| |..
T Consensus 31 ~~~~livt~~~~~~~g~~~~v~~~L~~-~~i~~~~f~~v~~----np~~~~v~~~----~~~~~~~~~D~IiaiGG-GS~ 100 (383)
T PRK09860 31 FTRTLIVTDNMLTKLGMAGDVQKALEE-RNIFSVIYDGTQP----NPTTENVAAG----LKLLKENNCDSVISLGG-GSP 100 (383)
T ss_pred CCEEEEEcCcchhhCccHHHHHHHHHH-cCCeEEEeCCCCC----CcCHHHHHHH----HHHHHHcCCCEEEEeCC-chH
Confidence 479999986533334556788888887 7887654322110 0111001000 0011 358999999999 677
Q ss_pred HHHHhhhc-------------------CCCCcEEEEeC
Q 003509 769 LHASNLFR-------------------GAVPPVISFNL 787 (814)
Q Consensus 769 LrAArlf~-------------------~s~~PILGINl 787 (814)
+-+++.++ ...+|++.|.+
T Consensus 101 iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPT 138 (383)
T PRK09860 101 HDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINT 138 (383)
T ss_pred HHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeC
Confidence 77777654 23579999975
No 154
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=70.17 E-value=7.8 Score=39.97 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=45.5
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchhHH--
Q 003509 693 VLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVIL-- 769 (814)
Q Consensus 693 VlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGTIL-- 769 (814)
|+||-+.+. .+..|.+||.+ .|.++.+...... +.+++ ..+.|.||..||=|..-
T Consensus 2 il~idn~ds----ft~nl~~~l~~-~g~~v~v~~~~~~-----------------~~~~~~~~~~d~iIlsgGP~~p~~~ 59 (195)
T PRK07649 2 ILMIDNYDS----FTFNLVQFLGE-LGQELVVKRNDEV-----------------TISDIENMKPDFLMISPGPCSPNEA 59 (195)
T ss_pred EEEEeCCCc----cHHHHHHHHHH-CCCcEEEEeCCCC-----------------CHHHHhhCCCCEEEECCCCCChHhC
Confidence 566666554 23558888887 7888766432100 11111 12579999999998753
Q ss_pred ----HHHhhhcCCCCcEEEEeCC
Q 003509 770 ----HASNLFRGAVPPVISFNLG 788 (814)
Q Consensus 770 ----rAArlf~~s~~PILGINlG 788 (814)
...+.+. ..+|||||-+|
T Consensus 60 ~~~~~~i~~~~-~~~PvLGIClG 81 (195)
T PRK07649 60 GISMEVIRYFA-GKIPIFGVCLG 81 (195)
T ss_pred CCchHHHHHhc-CCCCEEEEcHH
Confidence 3333333 57999999987
No 155
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=69.84 E-value=11 Score=41.79 Aligned_cols=44 Identities=14% Similarity=0.134 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHHHHhCCCC
Q 003509 330 PTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 330 ps~e~v~~fleiL~d~~~~PVLVHCtAGKDRTGal~aLLl~l~GV~ 375 (814)
.+.+.+++++.-+--..++||+++|..|. |+..++..+. ++|.+
T Consensus 252 ~~~~el~~~~~~~gi~~~~~iv~yC~sG~-~A~~~~~~L~-~~G~~ 295 (320)
T PLN02723 252 LPAEELKKRFEQEGISLDSPIVASCGTGV-TACILALGLH-RLGKT 295 (320)
T ss_pred CCHHHHHHHHHhcCCCCCCCEEEECCcHH-HHHHHHHHHH-HcCCC
Confidence 34566666554321235679999999987 7765555443 46764
No 156
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=69.75 E-value=6.9 Score=44.04 Aligned_cols=77 Identities=17% Similarity=0.254 Sum_probs=44.5
Q ss_pred CCEEEEEecCCc-hHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchh
Q 003509 690 PRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGV 767 (814)
Q Consensus 690 ~kkVlIV~K~~~-ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGT 767 (814)
.++++||+-... .......++.+.|.+ .|+++.+-..+.. .|....+... .+.. ..++|+||.||| |+
T Consensus 23 ~~r~livt~~~~~~~~g~~~~v~~~L~~-~g~~~~~~~~v~~----~p~~~~v~~~----~~~~~~~~~D~IIavGG-GS 92 (375)
T cd08179 23 GKKAFIVTGGGSMKKFGFLDKVEAYLKE-AGIEVEVFEGVEP----DPSVETVLKG----AEAMREFEPDWIIALGG-GS 92 (375)
T ss_pred CCeEEEEeCchHHHhCChHHHHHHHHHH-cCCeEEEeCCCCC----CcCHHHHHHH----HHHHHhcCCCEEEEeCC-cc
Confidence 378888875543 445566788888876 6887754322111 1111001000 0011 247899999999 77
Q ss_pred HHHHHhhhc
Q 003509 768 ILHASNLFR 776 (814)
Q Consensus 768 ILrAArlf~ 776 (814)
.+-+++.++
T Consensus 93 viD~AK~ia 101 (375)
T cd08179 93 PIDAAKAMW 101 (375)
T ss_pred HHHHHHHHH
Confidence 777777653
No 157
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=69.46 E-value=22 Score=34.03 Aligned_cols=100 Identities=20% Similarity=0.099 Sum_probs=55.8
Q ss_pred CEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchh--
Q 003509 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGV-- 767 (814)
Q Consensus 691 kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGT-- 767 (814)
++|+|+.-++-...+. ..+.+.|.. .|+++.+-...........+. .+. .+...++. ..+.|.+|+.||.++
T Consensus 2 ~~v~ill~~g~~~~e~-~~~~~~~~~-a~~~v~vvs~~~~~v~s~~g~-~i~--~~~~l~~~~~~~~D~liVpGg~~~~~ 76 (142)
T cd03132 2 RKVGILVADGVDAAEL-SALKAALKA-AGANVKVVAPTLGGVVDSDGK-TLE--VDQTYAGAPSVLFDAVVVPGGAEAAF 76 (142)
T ss_pred CEEEEEEcCCcCHHHH-HHHHHHHHH-CCCEEEEEecCcCceecCCCc-EEe--cceeecCCChhhcCEEEECCCccCHH
Confidence 5789988777544443 345666655 577775533211111100110 010 01122222 235899999999775
Q ss_pred -------HHHHHhhhcCCCCcEEEEeCCC-----cccCCC
Q 003509 768 -------ILHASNLFRGAVPPVISFNLGS-----LGFLTS 795 (814)
Q Consensus 768 -------ILrAArlf~~s~~PILGINlGr-----LGFLTe 795 (814)
++...+.+.....||.+|-.|. .|.|.+
T Consensus 77 ~~~~~~~l~~~l~~~~~~~~~I~aic~G~~~La~aGll~~ 116 (142)
T cd03132 77 ALAPSGRALHFVTEAFKHGKPIGAVGEGSDLLEAAGIPLE 116 (142)
T ss_pred HHccChHHHHHHHHHHhcCCeEEEcCchHHHHHHcCCCCC
Confidence 4455666666789999998774 366544
No 158
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=69.04 E-value=4.6 Score=48.41 Aligned_cols=33 Identities=24% Similarity=0.218 Sum_probs=27.8
Q ss_pred CcccEEEEEcCchhHHHHHhhhc-----CCCCcEEEEe
Q 003509 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFN 786 (814)
Q Consensus 754 ~~vDLVIvLGGDGTILrAArlf~-----~s~~PILGIN 786 (814)
-++|.+|+||||||+-.|+.+.. +..++|+||-
T Consensus 189 l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVP 226 (568)
T PLN02251 189 LDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCP 226 (568)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeC
Confidence 37999999999999999888654 4569999994
No 159
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=68.94 E-value=17 Score=43.69 Aligned_cols=88 Identities=19% Similarity=0.193 Sum_probs=56.1
Q ss_pred cccCCEEEEEecCCc---hHHHHHHHHHHHHhcCCCeEEEE--ccc--hhhHhhcCCCCccceeeeccCcccccCcccEE
Q 003509 687 KTTPRTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILV--EPD--VHDIFARIPGFGFVQTFYLQDTSDLHERVDFV 759 (814)
Q Consensus 687 ~~~~kkVlIV~K~~~---ea~~~a~eLi~~L~e~~Gi~V~v--e~~--~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLV 759 (814)
.+.+++++|+.||.. .+.++.+..++-|....++++-+ -.. -|..+. ......+.|-|
T Consensus 176 ~~r~~~lLV~iNP~gGkGka~~~F~~~v~Pll~~A~i~~evv~T~~~~HArei~---------------rt~dl~kyDgI 240 (579)
T KOG1116|consen 176 LKRPRRLLVFINPFGGKGKAKKLFKNHVEPLLSEAGISFEVVLTTRPNHAREIV---------------RTLDLGKYDGI 240 (579)
T ss_pred cCCCccEEEEECCCCCCccHHHHHHhhhhhhhhhcCceEEEEEecCccHHHHHH---------------HhhhccccceE
Confidence 347889999999985 57777665555554435655533 111 111111 11134678999
Q ss_pred EEEcCchhHHHHHhhhcC-------CCCcEEEEeCCC
Q 003509 760 ACLGGDGVILHASNLFRG-------AVPPVISFNLGS 789 (814)
Q Consensus 760 IvLGGDGTILrAArlf~~-------s~~PILGINlGr 789 (814)
||+||||++--+.+=+-. ..+||-=|-.|+
T Consensus 241 v~vsGDGl~hEVlNGLl~R~D~~~~~klPigiiP~GS 277 (579)
T KOG1116|consen 241 VCVSGDGLLHEVLNGLLERPDWEAAVKLPIGIIPCGS 277 (579)
T ss_pred EEecCCcCHHHhhhccccccchhhHhcCceeEeecCC
Confidence 999999999988875432 367777776664
No 160
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=68.84 E-value=8.3 Score=43.60 Aligned_cols=88 Identities=17% Similarity=0.145 Sum_probs=53.0
Q ss_pred CCEEEEEecCCc-hHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchh
Q 003509 690 PRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGV 767 (814)
Q Consensus 690 ~kkVlIV~K~~~-ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGT 767 (814)
.++++||+.... .......++.+.|.+ .|+++.+...+. ..|....+... .+.+ ..++|+||.||| |+
T Consensus 26 ~kr~livtd~~~~~~~g~~~~v~~~L~~-~gi~~~~f~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS 95 (383)
T cd08186 26 ISKVLLVTGKSAYKKSGAWDKVEPALDE-HGIEYVLYNKVT----PNPTVDQVDEA----AKLGREFGAQAVIAIGG-GS 95 (383)
T ss_pred CCEEEEEcCccHHhhcChHHHHHHHHHH-cCCeEEEeCCCC----CCCCHHHHHHH----HHHHHHcCCCEEEEeCC-cc
Confidence 478999986654 445556788888886 688775533221 11111111100 0011 247899999999 77
Q ss_pred HHHHHhhhcC--------------------CCCcEEEEeC
Q 003509 768 ILHASNLFRG--------------------AVPPVISFNL 787 (814)
Q Consensus 768 ILrAArlf~~--------------------s~~PILGINl 787 (814)
++-+++.++. ..+|++.|.+
T Consensus 96 ~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPT 135 (383)
T cd08186 96 PIDSAKSAAILLEHPGKTARDLYEFKFTPEKALPLIAINL 135 (383)
T ss_pred HHHHHHHHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeC
Confidence 7777766531 2479999975
No 161
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=68.65 E-value=8.2 Score=43.58 Aligned_cols=88 Identities=19% Similarity=0.260 Sum_probs=53.4
Q ss_pred CCEEEEEecCCc-hHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCccc-ccCcccEEEEEcCchh
Q 003509 690 PRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGV 767 (814)
Q Consensus 690 ~kkVlIV~K~~~-ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~-l~~~vDLVIvLGGDGT 767 (814)
-++++||+-+.. .....+.++.+.|.+ .|+++.+-..+.. .|....+.. -... ...++|+||.||| |+
T Consensus 28 ~~r~livt~~~~~~~~~~~~~v~~~L~~-~g~~~~~~~~v~~----~p~~~~v~~----~~~~~~~~~~D~IIaiGG-GS 97 (382)
T cd08187 28 GKKVLLVYGGGSIKKNGLYDRVIASLKE-AGIEVVELGGVEP----NPRLETVRE----GIELCKEEKVDFILAVGG-GS 97 (382)
T ss_pred CCEEEEEeCCcHHHhcCcHHHHHHHHHH-cCCeEEEECCccC----CCCHHHHHH----HHHHHHHcCCCEEEEeCC-hH
Confidence 478999976544 444556778888876 6887754322111 011000000 0000 1347899999999 78
Q ss_pred HHHHHhhhcC-------------------CCCcEEEEeC
Q 003509 768 ILHASNLFRG-------------------AVPPVISFNL 787 (814)
Q Consensus 768 ILrAArlf~~-------------------s~~PILGINl 787 (814)
.+-+++.+.- ..+|++.|.+
T Consensus 98 ~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPT 136 (382)
T cd08187 98 VIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLT 136 (382)
T ss_pred HHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeC
Confidence 8888876532 3689999986
No 162
>PRK05637 anthranilate synthase component II; Provisional
Probab=68.47 E-value=16 Score=38.30 Aligned_cols=76 Identities=13% Similarity=0.141 Sum_probs=47.1
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchhH
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGTI 768 (814)
|++|+|+=+.+.- ...|+++|.+ .|+.+.+-+.-. +.+++ ..+.|.||..||-|..
T Consensus 1 ~~~il~iD~~dsf----~~nl~~~l~~-~g~~~~v~~~~~------------------~~~~l~~~~~~~iIlsgGPg~~ 57 (208)
T PRK05637 1 MTHVVLIDNHDSF----VYNLVDAFAV-AGYKCTVFRNTV------------------PVEEILAANPDLICLSPGPGHP 57 (208)
T ss_pred CCEEEEEECCcCH----HHHHHHHHHH-CCCcEEEEeCCC------------------CHHHHHhcCCCEEEEeCCCCCH
Confidence 4678888776552 2346677766 576665533210 11122 2367899999999988
Q ss_pred HHH---Hhhhc--CCCCcEEEEeCC
Q 003509 769 LHA---SNLFR--GAVPPVISFNLG 788 (814)
Q Consensus 769 LrA---Arlf~--~s~~PILGINlG 788 (814)
-.+ ..++. ...+|||||-+|
T Consensus 58 ~d~~~~~~li~~~~~~~PiLGIClG 82 (208)
T PRK05637 58 RDAGNMMALIDRTLGQIPLLGICLG 82 (208)
T ss_pred HHhhHHHHHHHHHhCCCCEEEEcHH
Confidence 554 22332 137999999987
No 163
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=68.05 E-value=5.1 Score=47.77 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=27.7
Q ss_pred CcccEEEEEcCchhHHHHHhhhc-----CCCCcEEEEe
Q 003509 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFN 786 (814)
Q Consensus 754 ~~vDLVIvLGGDGTILrAArlf~-----~s~~PILGIN 786 (814)
-++|.+|+||||||+=.|+.+.. +..+||+||-
T Consensus 160 ~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIP 197 (539)
T TIGR02477 160 LKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVP 197 (539)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 37999999999999988877653 4579999995
No 164
>PRK07411 hypothetical protein; Validated
Probab=67.76 E-value=10 Score=43.34 Aligned_cols=84 Identities=20% Similarity=0.213 Sum_probs=48.2
Q ss_pred CCCHhhHHHHHHcCC--cEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEE
Q 003509 274 QVTEEGLKWLMEKGY--KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLY 351 (814)
Q Consensus 274 qpT~eDla~L~~lGI--KTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d~~~~PVL 351 (814)
.++.+++..+.+.+- -.|||.|+++ |-. .....| -+++|+.+.... ....++.++ ..+++|+
T Consensus 283 ~Is~~el~~~l~~~~~~~vlIDVR~~~-E~~--------~ghIpG--AiniP~~~l~~~--~~~~~l~~l---~~d~~IV 346 (390)
T PRK07411 283 EMTVTELKALLDSGADDFVLIDVRNPN-EYE--------IARIPG--SVLVPLPDIENG--PGVEKVKEL---LNGHRLI 346 (390)
T ss_pred ccCHHHHHHHHhCCCCCeEEEECCCHH-Hhc--------cCcCCC--CEEccHHHhhcc--cchHHHhhc---CCCCeEE
Confidence 578888887766553 3699999975 211 011233 345665422111 011223322 2467999
Q ss_pred EeCccCCChHHHHHHHHHHhCCCC
Q 003509 352 LHSKEGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 352 VHCtAGKDRTGal~aLLl~l~GV~ 375 (814)
+||..|. |+..++..++. +|..
T Consensus 347 vyC~~G~-RS~~aa~~L~~-~G~~ 368 (390)
T PRK07411 347 AHCKMGG-RSAKALGILKE-AGIE 368 (390)
T ss_pred EECCCCH-HHHHHHHHHHH-cCCC
Confidence 9999998 99876655543 5764
No 165
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=67.75 E-value=15 Score=37.72 Aligned_cols=71 Identities=18% Similarity=0.176 Sum_probs=45.0
Q ss_pred CEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHH-
Q 003509 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL- 769 (814)
Q Consensus 691 kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTIL- 769 (814)
.+|+|+...++- .+....|.. .|.++..-.. .++ .+.+|.||.-||-++..
T Consensus 2 m~~~i~~~~g~~-----~~~~~~l~~-~g~~~~~~~~---------------------~~~-l~~~dgiii~GG~~~~~~ 53 (189)
T PRK13525 2 MKIGVLALQGAV-----REHLAALEA-LGAEAVEVRR---------------------PED-LDEIDGLILPGGESTTMG 53 (189)
T ss_pred CEEEEEEcccCH-----HHHHHHHHH-CCCEEEEeCC---------------------hhH-hccCCEEEECCCChHHHH
Confidence 378888888761 112233554 5766654221 111 24689999999988763
Q ss_pred ---------HHHhhhcCCCCcEEEEeCCC
Q 003509 770 ---------HASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 770 ---------rAArlf~~s~~PILGINlGr 789 (814)
...+.+...++||+||-.|.
T Consensus 54 ~~~~~~~~~~~i~~~~~~g~PilGIC~G~ 82 (189)
T PRK13525 54 KLLRDFGLLEPLREFIASGLPVFGTCAGM 82 (189)
T ss_pred HHHHhccHHHHHHHHHHCCCeEEEECHHH
Confidence 23445556789999998875
No 166
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=67.62 E-value=8.7 Score=43.01 Aligned_cols=87 Identities=17% Similarity=0.217 Sum_probs=53.1
Q ss_pred CEEEEEecCCc-hHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCccc-ccCcccEEEEEcCchhH
Q 003509 691 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (814)
Q Consensus 691 kkVlIV~K~~~-ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~-l~~~vDLVIvLGGDGTI 768 (814)
++++||+-+.. .......++.+.|.+ .|+++.+-..+.. .|....+... .+. ...++|+||.||| |+.
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~-~g~~~~~~~~v~~----~p~~~~v~~~----~~~~~~~~~D~IIavGG-GSv 95 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEE-LGIEYEIFDEVEE----NPSLETIMEA----VEIAKKFNADFVIGIGG-GSP 95 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHH-cCCeEEEeCCCCC----CcCHHHHHHH----HHHHHhcCCCEEEEeCC-chH
Confidence 79999987665 444456778888876 6877654322111 1111001000 000 1347899999999 888
Q ss_pred HHHHhhhc------------------CCCCcEEEEeC
Q 003509 769 LHASNLFR------------------GAVPPVISFNL 787 (814)
Q Consensus 769 LrAArlf~------------------~s~~PILGINl 787 (814)
+-+++.++ ...+|++.|.+
T Consensus 96 iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPT 132 (357)
T cd08181 96 LDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPT 132 (357)
T ss_pred HHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeC
Confidence 88888543 23689999975
No 167
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=67.30 E-value=5.5 Score=47.70 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=27.5
Q ss_pred cccEEEEEcCchhHHHHHhhhc-----CCCCcEEEEe
Q 003509 755 RVDFVACLGGDGVILHASNLFR-----GAVPPVISFN 786 (814)
Q Consensus 755 ~vDLVIvLGGDGTILrAArlf~-----~s~~PILGIN 786 (814)
++|.+|+||||||+=.|..+.. ...+||+||-
T Consensus 164 ~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIP 200 (555)
T PRK07085 164 KLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVP 200 (555)
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEe
Confidence 7999999999999988887654 3589999993
No 168
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=67.10 E-value=13 Score=46.03 Aligned_cols=79 Identities=19% Similarity=0.229 Sum_probs=50.4
Q ss_pred cCCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhH
Q 003509 689 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 768 (814)
Q Consensus 689 ~~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTI 768 (814)
..++|+||=+.+. ....+.+||.+ .|+++.+...... .+..+ ..++|.||..||-|+.
T Consensus 515 ~~~~IlVID~gds----~~~~l~~~L~~-~G~~v~vv~~~~~----------------~~~~~-~~~~DgLILsgGPGsp 572 (717)
T TIGR01815 515 EGRRILLVDHEDS----FVHTLANYLRQ-TGASVTTLRHSHA----------------EAAFD-ERRPDLVVLSPGPGRP 572 (717)
T ss_pred CCCEEEEEECCCh----hHHHHHHHHHH-CCCeEEEEECCCC----------------hhhhh-hcCCCEEEEcCCCCCc
Confidence 3578999965532 24568888887 7888755322100 00000 1368999999999985
Q ss_pred -----HHHHhhhcCCCCcEEEEeCCC
Q 003509 769 -----LHASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 769 -----LrAArlf~~s~~PILGINlGr 789 (814)
....+.+...++|||||-+|.
T Consensus 573 ~d~~~~~~I~~~~~~~iPvLGICLG~ 598 (717)
T TIGR01815 573 ADFDVAGTIDAALARGLPVFGVCLGL 598 (717)
T ss_pred hhcccHHHHHHHHHCCCCEEEECHHH
Confidence 334444445789999998864
No 169
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=66.88 E-value=9.1 Score=42.49 Aligned_cols=90 Identities=20% Similarity=0.191 Sum_probs=50.3
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEE---EccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCch
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNIL---VEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~---ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDG 766 (814)
.++++||+...-... ...++.+.|.+ .|+++. ++.... .+....+......-.+.-..+.|+||.||| |
T Consensus 20 ~~~~livtd~~~~~~-~~~~v~~~L~~-~g~~~~~~~~~~~e~-----~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-G 91 (344)
T TIGR01357 20 PSKLVIITDETVADL-YADKLLEALQA-LGYNVLKLTVPDGEE-----SKSLETVQRLYDQLLEAGLDRSSTIIALGG-G 91 (344)
T ss_pred CCeEEEEECCchHHH-HHHHHHHHHHh-cCCceeEEEeCCCCC-----CCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-h
Confidence 478999986544222 56778888876 676552 211100 000000000000000001134699999998 8
Q ss_pred hHHHHHhhhc---CCCCcEEEEeC
Q 003509 767 VILHASNLFR---GAVPPVISFNL 787 (814)
Q Consensus 767 TILrAArlf~---~s~~PILGINl 787 (814)
+++-++..++ ...+|++.|.+
T Consensus 92 sv~D~aK~iA~~~~~~~p~i~VPT 115 (344)
T TIGR01357 92 VVGDLAGFVAATYMRGIRFIQVPT 115 (344)
T ss_pred HHHHHHHHHHHHHccCCCEEEecC
Confidence 8888888765 45789999886
No 170
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=66.85 E-value=8 Score=44.24 Aligned_cols=78 Identities=19% Similarity=0.230 Sum_probs=50.3
Q ss_pred cCCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCccc-ccCcccEEEEEcCchh
Q 003509 689 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGV 767 (814)
Q Consensus 689 ~~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~-l~~~vDLVIvLGGDGT 767 (814)
-.++++||+-++-.....+.++++.|.+ .++++.+..++.- .|....+.. -.+. -..++|+||.||| |.
T Consensus 28 g~~r~liVTd~~~~~~g~~~~v~~~L~~-~~i~~~if~~v~p----~P~~~~v~~----~~~~~~~~~~D~iIalGG-GS 97 (377)
T COG1454 28 GAKRALIVTDRGLAKLGLLDKVLDSLDA-AGIEYEVFDEVEP----EPTIETVEA----GAEVAREFGPDTIIALGG-GS 97 (377)
T ss_pred CCCceEEEECCccccchhHHHHHHHHHh-cCCeEEEecCCCC----CCCHHHHHH----HHHHHHhcCCCEEEEeCC-cc
Confidence 4589999999986667778999999998 7877766444221 111111100 0011 1358999999999 77
Q ss_pred HHHHHhhhc
Q 003509 768 ILHASNLFR 776 (814)
Q Consensus 768 ILrAArlf~ 776 (814)
.+-+++.+.
T Consensus 98 ~~D~AK~i~ 106 (377)
T COG1454 98 VIDAAKAIA 106 (377)
T ss_pred HHHHHHHHH
Confidence 777776543
No 171
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=66.83 E-value=5.6 Score=48.11 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=27.2
Q ss_pred CcccEEEEEcCchhHHHHHhhhc-----CCCCcEEEE
Q 003509 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISF 785 (814)
Q Consensus 754 ~~vDLVIvLGGDGTILrAArlf~-----~s~~PILGI 785 (814)
-++|.+|+||||||+=.|+.+.. +..++|+||
T Consensus 172 l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGI 208 (610)
T PLN03028 172 LKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGV 208 (610)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEe
Confidence 37999999999999988887654 358999999
No 172
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=66.51 E-value=25 Score=30.07 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=19.4
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHhCCCC
Q 003509 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGal~aLLl~l~GV~ 375 (814)
..+.+|+++|..|. |+-.++..+.. +|.+
T Consensus 54 ~~~~~iv~~c~~g~-~a~~~~~~l~~-~G~~ 82 (100)
T smart00450 54 DKDKPVVVYCRSGN-RSAKAAWLLRE-LGFK 82 (100)
T ss_pred CCCCeEEEEeCCCc-HHHHHHHHHHH-cCCC
Confidence 45679999997777 77555444433 4655
No 173
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=66.41 E-value=8.6 Score=43.02 Aligned_cols=89 Identities=20% Similarity=0.298 Sum_probs=53.3
Q ss_pred cCCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchh
Q 003509 689 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGV 767 (814)
Q Consensus 689 ~~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGT 767 (814)
..++++||+...-.......++.+.|.+ .|+++.+...+.. .|....+... .... ..++|+||.||| |+
T Consensus 22 ~~~~~lvv~~~~~~~~~~~~~v~~~L~~-~~~~~~~~~~~~~----~p~~~~v~~~----~~~~~~~~~d~IiaiGG-Gs 91 (370)
T cd08551 22 GGRKALIVTDPGLVKTGVLDKVIDSLKE-AGIEVVIFDGVEP----NPTLSNVDAA----VAAYREEGCDGVIAVGG-GS 91 (370)
T ss_pred CCCeEEEEeCcchhhCccHHHHHHHHHH-cCCeEEEECCCCC----CCCHHHHHHH----HHHHHhcCCCEEEEeCC-ch
Confidence 3479999986554224556778888876 6777654322110 0111011000 0011 247899999999 78
Q ss_pred HHHHHhhhcC-------------------CCCcEEEEeC
Q 003509 768 ILHASNLFRG-------------------AVPPVISFNL 787 (814)
Q Consensus 768 ILrAArlf~~-------------------s~~PILGINl 787 (814)
++-+++.++. ..+|++.|.+
T Consensus 92 ~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPT 130 (370)
T cd08551 92 VLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPT 130 (370)
T ss_pred HHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecC
Confidence 8888887642 1689999975
No 174
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=66.04 E-value=23 Score=35.84 Aligned_cols=99 Identities=15% Similarity=0.183 Sum_probs=56.9
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhh---HhhcCCCCccceeeeccCcccc-cCcccEEEEEcCc
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHD---IFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGD 765 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~---~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGD 765 (814)
-|+|+|+.-++-+..+.+. ..+.|.+ .|++|.+-..... ......+ +....+...++. .++.|+|++.||.
T Consensus 2 ~~~~~il~~~g~~~~e~~~-p~~~l~~-ag~~v~~~s~~~~~~~~v~ss~G---~~v~~d~~l~~~~~~~~D~l~ipGG~ 76 (196)
T PRK11574 2 SASALVCLAPGSEETEAVT-TIDLLVR-GGIKVTTASVASDGNLEITCSRG---VKLLADAPLVEVADGDFDVIVLPGGI 76 (196)
T ss_pred CceEEEEeCCCcchhhHhH-HHHHHHH-CCCeEEEEEccCCCCceEEcCCC---CEEeCCCCHHHCCCCCCCEEEECCCC
Confidence 3679999888765555433 4445544 4666655321110 0100011 111111223333 2468999999996
Q ss_pred h---------hHHHHHhhhcCCCCcEEEEeCCCcccC
Q 003509 766 G---------VILHASNLFRGAVPPVISFNLGSLGFL 793 (814)
Q Consensus 766 G---------TILrAArlf~~s~~PILGINlGrLGFL 793 (814)
+ .++...+.+.....+|.+|-.|..-+|
T Consensus 77 ~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll 113 (196)
T PRK11574 77 KGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVL 113 (196)
T ss_pred chhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHH
Confidence 4 367777778888999999999985444
No 175
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=65.96 E-value=9.8 Score=45.56 Aligned_cols=29 Identities=21% Similarity=0.215 Sum_probs=23.9
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHhCC
Q 003509 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMA 373 (814)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGal~aLLl~l~G 373 (814)
..+.+|||||+-|.|||..+..|...++.
T Consensus 342 ~~~~sVlvhcsdGwDrT~qV~SLaQllLD 370 (573)
T KOG1089|consen 342 SEGASVLVHCSDGWDRTCQVSSLAQLLLD 370 (573)
T ss_pred hCCCeEEEEccCCcchhHHHHHHHHHHhC
Confidence 45579999999999999988888766443
No 176
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=65.27 E-value=6.1 Score=47.23 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=27.4
Q ss_pred CcccEEEEEcCchhHHHHHhhhc-----CCCCcEEEEe
Q 003509 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFN 786 (814)
Q Consensus 754 ~~vDLVIvLGGDGTILrAArlf~-----~s~~PILGIN 786 (814)
-++|.+|+||||||+-.|+.+.. +..++|+||-
T Consensus 165 ~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVP 202 (550)
T cd00765 165 LDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVP 202 (550)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 36999999999999988877654 3569999994
No 177
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=65.20 E-value=17 Score=40.48 Aligned_cols=86 Identities=13% Similarity=0.091 Sum_probs=53.5
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchhH
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGTI 768 (814)
-++++||+-..-.. ....++.+.|.+ .|+.+.++. +. ..|....+... .+.. ..++|+||.||| |+.
T Consensus 22 ~~r~livt~~~~~~-~~~~~v~~~L~~-~~i~~~~~~-~~----~~p~~~~v~~~----~~~~~~~~~D~IIavGG-GS~ 89 (351)
T cd08170 22 GKRALIIADEFVLD-LVGAKIEESLAA-AGIDARFEV-FG----GECTRAEIERL----AEIARDNGADVVIGIGG-GKT 89 (351)
T ss_pred CCeEEEEECHHHHH-HHHHHHHHHHHh-CCCeEEEEE-eC----CcCCHHHHHHH----HHHHhhcCCCEEEEecC-chh
Confidence 38999998433322 567788889887 688764321 11 01111001000 0011 248999999999 899
Q ss_pred HHHHhhhcC-CCCcEEEEeC
Q 003509 769 LHASNLFRG-AVPPVISFNL 787 (814)
Q Consensus 769 LrAArlf~~-s~~PILGINl 787 (814)
+-+++.++. ..+|++.|.+
T Consensus 90 iD~aK~ia~~~~~P~iaIPT 109 (351)
T cd08170 90 LDTAKAVADYLGAPVVIVPT 109 (351)
T ss_pred hHHHHHHHHHcCCCEEEeCC
Confidence 999998764 5899999975
No 178
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=65.17 E-value=21 Score=38.11 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=26.5
Q ss_pred cCcccEEEEEcCchh-----HHHHHhhhcCCCCcEEEEeCCC
Q 003509 753 HERVDFVACLGGDGV-----ILHASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 753 ~~~vDLVIvLGGDGT-----ILrAArlf~~s~~PILGINlGr 789 (814)
...+|-||.-||-|+ .+.+++.+...++|||||-+|.
T Consensus 53 l~~~dgivl~GG~~~~~~~~~~~~i~~~~~~~~PvlGIClG~ 94 (235)
T cd01746 53 LKGADGILVPGGFGIRGVEGKILAIKYARENNIPFLGICLGM 94 (235)
T ss_pred hccCCEEEECCCCCCcchhhHHHHHHHHHHCCceEEEEEhHH
Confidence 356899999898532 2345555556789999999874
No 179
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=65.15 E-value=16 Score=43.62 Aligned_cols=85 Identities=19% Similarity=0.154 Sum_probs=52.2
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCe----EEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCc
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKM----NILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD 765 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi----~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGD 765 (814)
.-+|+||+|... ..+....+.+.|.. .|+ +|.+..-..+.+.. ... +..+.+|-||.-||=
T Consensus 289 ~v~IalVGKY~~-~~daY~SI~eAL~~-ag~~~~~~V~~~~i~se~i~~------------~~~-~~L~~~dGIiLpGG~ 353 (525)
T TIGR00337 289 EVTIGIVGKYVE-LKDSYLSVIEALKH-AGAKLDTKVNIKWIDSEDLEE------------EGA-EFLKGVDGILVPGGF 353 (525)
T ss_pred CcEEEEEeCCcC-CHHHHHHHHHHHHh-CccccCCEEEEEEecHHHhhh------------hhh-hhhcCCCEEEeCCCC
Confidence 358999999765 22233577777776 454 33332211111110 001 123568999999997
Q ss_pred hh-----HHHHHhhhcCCCCcEEEEeCCC
Q 003509 766 GV-----ILHASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 766 GT-----ILrAArlf~~s~~PILGINlGr 789 (814)
|. .+.+++.+...++|+|||-+|.
T Consensus 354 G~~~~~g~i~ai~~a~e~~iP~LGIClG~ 382 (525)
T TIGR00337 354 GERGVEGKILAIKYARENNIPFLGICLGM 382 (525)
T ss_pred CChhhcChHHHHHHHHHcCCCEEEEcHHH
Confidence 54 4557787777899999998873
No 180
>PRK13566 anthranilate synthase; Provisional
Probab=64.99 E-value=16 Score=45.08 Aligned_cols=79 Identities=13% Similarity=0.113 Sum_probs=52.0
Q ss_pred cCCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchh-
Q 003509 689 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV- 767 (814)
Q Consensus 689 ~~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGT- 767 (814)
..++|+||=+-+. ....|.+||++ .|.+|.+....... .... ...+|.||..||-|+
T Consensus 525 ~g~~IlvID~~ds----f~~~l~~~Lr~-~G~~v~vv~~~~~~---------------~~~~--~~~~DgVVLsgGpgsp 582 (720)
T PRK13566 525 EGKRVLLVDHEDS----FVHTLANYFRQ-TGAEVTTVRYGFAE---------------EMLD--RVNPDLVVLSPGPGRP 582 (720)
T ss_pred CCCEEEEEECCCc----hHHHHHHHHHH-CCCEEEEEECCCCh---------------hHhh--hcCCCEEEECCCCCCh
Confidence 3568888876642 24578889987 79888653321100 0001 136899999999885
Q ss_pred ----HHHHHhhhcCCCCcEEEEeCCC
Q 003509 768 ----ILHASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 768 ----ILrAArlf~~s~~PILGINlGr 789 (814)
+....+.+...++|||||-+|.
T Consensus 583 ~d~~~~~lI~~a~~~~iPILGIClG~ 608 (720)
T PRK13566 583 SDFDCKATIDAALARNLPIFGVCLGL 608 (720)
T ss_pred hhCCcHHHHHHHHHCCCcEEEEehhH
Confidence 4555565556789999999874
No 181
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=64.80 E-value=14 Score=43.62 Aligned_cols=33 Identities=30% Similarity=0.352 Sum_probs=29.5
Q ss_pred ccEEEEEcCchh-----HHHHHhhhcCCCCcEEEEeCC
Q 003509 756 VDFVACLGGDGV-----ILHASNLFRGAVPPVISFNLG 788 (814)
Q Consensus 756 vDLVIvLGGDGT-----ILrAArlf~~s~~PILGINlG 788 (814)
+|-|++-||=|. -+.|++..+..++|+|||-+|
T Consensus 344 ~dgIlVPGGFG~RG~eGkI~Ai~yAREn~iP~lGIClG 381 (533)
T COG0504 344 VDGILVPGGFGYRGVEGKIAAIRYARENNIPFLGICLG 381 (533)
T ss_pred CCEEEeCCCCCcCchHHHHHHHHHHHhcCCCEEEEchh
Confidence 899999999774 577888888999999999987
No 182
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=64.72 E-value=18 Score=40.83 Aligned_cols=79 Identities=13% Similarity=0.175 Sum_probs=45.1
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeC
Q 003509 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHS 354 (814)
Q Consensus 275 pT~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d~~~~PVLVHC 354 (814)
++.+++..+.+.+ -.|||.|+++ + +. .-...| -+++|.. .+......+....+++|+++|
T Consensus 5 is~~el~~~l~~~-~~ivDvR~~~-e---~~-----~ghIpg--Ai~ip~~--------~l~~~~~~~~~~~~~~IvvyC 64 (376)
T PRK08762 5 ISPAEARARAAQG-AVLIDVREAH-E---RA-----SGQAEG--ALRIPRG--------FLELRIETHLPDRDREIVLIC 64 (376)
T ss_pred eCHHHHHHHHhCC-CEEEECCCHH-H---Hh-----CCcCCC--CEECCHH--------HHHHHHhhhcCCCCCeEEEEc
Confidence 5777777776667 4799999875 2 11 001122 2444432 233333222124568999999
Q ss_pred ccCCChHHHHHHHHHHhCCCC
Q 003509 355 KEGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 355 tAGKDRTGal~aLLl~l~GV~ 375 (814)
..|. |+..++.++. ..|.+
T Consensus 65 ~~G~-rs~~aa~~L~-~~G~~ 83 (376)
T PRK08762 65 ASGT-RSAHAAATLR-ELGYT 83 (376)
T ss_pred CCCc-HHHHHHHHHH-HcCCC
Confidence 9987 8765544443 35764
No 183
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=64.63 E-value=13 Score=41.48 Aligned_cols=89 Identities=17% Similarity=0.164 Sum_probs=52.0
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHH
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTIL 769 (814)
.++++||+.+.-.... ..++.+.|.+ .|+++.+....... ..|....+... .+.+.+++|+||.||| |+++
T Consensus 23 ~~~~livtd~~~~~~~-~~~v~~~l~~-~~i~~~~~~~~~~~--~~pt~~~v~~~----~~~~~~~~d~IIaIGG-Gs~~ 93 (348)
T cd08175 23 YKKALIVADENTYAAA-GKKVEALLKR-AGVVVLLIVLPAGD--LIADEKAVGRV----LKELERDTDLIIAVGS-GTIN 93 (348)
T ss_pred CCcEEEEECCcHHHHH-HHHHHHHHHH-CCCeeEEeecCCCc--ccCCHHHHHHH----HHHhhccCCEEEEECC-cHHH
Confidence 3789999855432112 5788889887 67765332111000 00111111000 1111227999999999 8999
Q ss_pred HHHhhhcC-CCCcEEEEeC
Q 003509 770 HASNLFRG-AVPPVISFNL 787 (814)
Q Consensus 770 rAArlf~~-s~~PILGINl 787 (814)
-+++.++. ..+|++.|.+
T Consensus 94 D~aK~vA~~~~~p~i~IPT 112 (348)
T cd08175 94 DITKYVSYKTGIPYISVPT 112 (348)
T ss_pred HHHHHHHHhcCCCEEEecC
Confidence 99998763 5789999974
No 184
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=64.60 E-value=6.1 Score=48.84 Aligned_cols=117 Identities=13% Similarity=0.098 Sum_probs=66.6
Q ss_pred ccCCEEEEEecCCc-hHH-HHHHHHHHHHhcCCCeEEEEccchhh-Hh---------------hcCCCCccceeeecc--
Q 003509 688 TTPRTVLVLKKPGP-ALM-EEAKEVASFLYHQEKMNILVEPDVHD-IF---------------ARIPGFGFVQTFYLQ-- 747 (814)
Q Consensus 688 ~~~kkVlIV~K~~~-ea~-~~a~eLi~~L~e~~Gi~V~ve~~~a~-~l---------------~~~p~~~~v~~~~~~-- 747 (814)
+..++|+|+.--++ .-+ ..++.++.+... +|.+|+--.+-.. .+ ...++. .+.+-...
T Consensus 387 ~~~~rIaIltsGG~apGmNaair~vv~~a~~-~g~~V~Gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt-~LgtsR~~~~ 464 (745)
T TIGR02478 387 ASRLRIAIIHVGAPAGGMNAATRSAVRYAIA-RGHTVIAIHNGFSGLARGDVRELTWSDVEGWVGEGGS-ELGTNRELPG 464 (745)
T ss_pred CCceEEEEEecCCCchhHHHHHHHHHHHHHh-CCCEEEEEecChhhhccCCeecCCHHHHHHHHhcCCc-ccccCCCCch
Confidence 34589999998887 434 345677877766 6888765333111 11 011110 00000000
Q ss_pred -Ccccc-----cCcccEEEEEcCchhHHHHHhhhc------CCCCcEEEEeC-------C---CcccCCCCCcccHHHHH
Q 003509 748 -DTSDL-----HERVDFVACLGGDGVILHASNLFR------GAVPPVISFNL-------G---SLGFLTSHPVSSYLNSL 805 (814)
Q Consensus 748 -~~~~l-----~~~vDLVIvLGGDGTILrAArlf~------~s~~PILGINl-------G---rLGFLTe~~~dei~eaL 805 (814)
+...+ .-++|.+|+||||||+-.|..+.. ...+||+||-. | ++||-|..+ .+-+++
T Consensus 465 ~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~gtd~t~GfdTA~~--~~~~~i 542 (745)
T TIGR02478 465 KDLGMIAYYFQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTALN--EITEYC 542 (745)
T ss_pred hHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCccCCCHHHHHH--HHHHHH
Confidence 01111 236999999999999987777654 25799999942 3 578777642 334444
Q ss_pred hhh
Q 003509 806 CFL 808 (814)
Q Consensus 806 e~L 808 (814)
++|
T Consensus 543 d~i 545 (745)
T TIGR02478 543 DNI 545 (745)
T ss_pred HHH
Confidence 433
No 185
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=64.43 E-value=16 Score=41.39 Aligned_cols=88 Identities=14% Similarity=0.183 Sum_probs=51.4
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchhH
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGTI 768 (814)
.++++||+...-.......++.+.|.+ .|+++.+...+.. .|....+... .+.. ..++|+||.||| |+.
T Consensus 30 ~~~~lvvtd~~~~~~g~~~~v~~~L~~-~g~~~~~~~~v~~----~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS~ 99 (382)
T PRK10624 30 FKKALIVTDKTLVKCGVVAKVTDVLDA-AGLAYEIYDGVKP----NPTIEVVKEG----VEVFKASGADYLIAIGG-GSP 99 (382)
T ss_pred CCEEEEEeCcchhhCcchHHHHHHHHH-CCCeEEEeCCCCC----CcCHHHHHHH----HHHHHhcCCCEEEEeCC-hHH
Confidence 378999986543323456778888876 6877654332111 1111111000 0111 247999999999 788
Q ss_pred HHHHhhhc---------------------CCCCcEEEEeC
Q 003509 769 LHASNLFR---------------------GAVPPVISFNL 787 (814)
Q Consensus 769 LrAArlf~---------------------~s~~PILGINl 787 (814)
+-+++.++ ...+|++.|-+
T Consensus 100 iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPT 139 (382)
T PRK10624 100 QDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPT 139 (382)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECC
Confidence 88876532 13579999975
No 186
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=63.84 E-value=11 Score=42.47 Aligned_cols=76 Identities=21% Similarity=0.257 Sum_probs=44.9
Q ss_pred CEEEEEecCCc-hHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHH
Q 003509 691 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (814)
Q Consensus 691 kkVlIV~K~~~-ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTIL 769 (814)
++++||+-... .......++.+.|.+ .|+++.+...+.. .|....+.... .. -...++|+||.||| |..+
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~-~~~~~~~~~~v~~----~p~~~~v~~~~--~~-~~~~~~D~IiavGG-GS~i 96 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQ-AGVEVVVFDKVEP----NPTTTTVMEGA--AL-AREEGCDFVVGLGG-GSSM 96 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHH-cCCeEEEeCCccC----CCCHHHHHHHH--HH-HHHcCCCEEEEeCC-ccHH
Confidence 79999997654 345667888899987 6887754322111 11110010000 00 01247999999999 6777
Q ss_pred HHHhhh
Q 003509 770 HASNLF 775 (814)
Q Consensus 770 rAArlf 775 (814)
-+++.+
T Consensus 97 D~aK~i 102 (380)
T cd08185 97 DTAKAI 102 (380)
T ss_pred HHHHHH
Confidence 777664
No 187
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=63.69 E-value=13 Score=41.35 Aligned_cols=97 Identities=13% Similarity=0.183 Sum_probs=58.5
Q ss_pred CEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHHH
Q 003509 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (814)
Q Consensus 691 kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTILr 770 (814)
++++||+..... .....++.+.|.+ .|+++.+...+.. .|....+.... .. -...++|+||.||| |+++-
T Consensus 23 ~r~liv~d~~~~-~~~~~~v~~~l~~-~~~~~~~~~~~~~----~p~~~~v~~~~--~~-~~~~~~d~iiavGG-Gs~~D 92 (345)
T cd08171 23 KKVVVIGGKTAL-AAAKDKIKAALEQ-SGIEITDFIWYGG----ESTYENVERLK--KN-PAVQEADMIFAVGG-GKAID 92 (345)
T ss_pred CEEEEEeCHHHH-HHHHHHHHHHHHH-CCCeEEEEEecCC----CCCHHHHHHHH--HH-HhhcCCCEEEEeCC-cHHHH
Confidence 789998765432 2346678888876 6877643221110 01110110000 00 01347999999999 89999
Q ss_pred HHhhhcC-CCCcEEEEeC--CCcccCCCCC
Q 003509 771 ASNLFRG-AVPPVISFNL--GSLGFLTSHP 797 (814)
Q Consensus 771 AArlf~~-s~~PILGINl--GrLGFLTe~~ 797 (814)
+++.++. ..+|++.|.+ |+=+..|.+.
T Consensus 93 ~aK~ia~~~~~p~i~VPTt~gtgse~t~~a 122 (345)
T cd08171 93 TVKVLADKLGKPVFTFPTIASNCAAVTAVS 122 (345)
T ss_pred HHHHHHHHcCCCEEEecCccccCccccceE
Confidence 9998764 5889999985 5656655554
No 188
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=63.46 E-value=9.3 Score=43.43 Aligned_cols=76 Identities=17% Similarity=0.182 Sum_probs=42.4
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCccc-ccCcccEEEEEcCchhH
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~-l~~~vDLVIvLGGDGTI 768 (814)
.++++||+.+.-.......++.+.|.+ .|+++.+...+.. .|....+... .+. ...++|+||.||| |+.
T Consensus 21 ~~k~liVtd~~~~~~g~~~~v~~~L~~-~gi~~~~f~~v~~----~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS~ 90 (398)
T cd08178 21 KKRAFIVTDRFMVKLGYVDKVIDVLKR-RGVETEVFSDVEP----DPSLETVRKG----LELMNSFKPDTIIALGG-GSP 90 (398)
T ss_pred CCeEEEEcChhHHhCccHHHHHHHHHH-CCCeEEEecCCCC----CcCHHHHHHH----HHHHHhcCCCEEEEeCC-ccH
Confidence 378999985432223356778888887 6887764332111 1111111000 001 1347899999999 666
Q ss_pred HHHHhhh
Q 003509 769 LHASNLF 775 (814)
Q Consensus 769 LrAArlf 775 (814)
+-+++.+
T Consensus 91 iD~AK~i 97 (398)
T cd08178 91 MDAAKIM 97 (398)
T ss_pred HHHHHHH
Confidence 6666554
No 189
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=63.37 E-value=22 Score=38.47 Aligned_cols=87 Identities=18% Similarity=0.195 Sum_probs=49.3
Q ss_pred cCCEEEEEecCCc-hHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCch
Q 003509 689 TPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDG 766 (814)
Q Consensus 689 ~~kkVlIV~K~~~-ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDG 766 (814)
..++++||.-... ++ ..+++.+.|+. .|+++.+-...... +....+. .-...+ ..++|+||.+|| |
T Consensus 18 ~~~~~lvv~d~~t~~~--~g~~v~~~l~~-~g~~v~~~~~~~~~----~~~~~~~----~~~~~~~~~~~d~ii~vGg-G 85 (250)
T PF13685_consen 18 GLKKVLVVTDENTYKA--AGEKVEESLKS-AGIEVAVIEEFVGD----ADEDEVE----KLVEALRPKDADLIIGVGG-G 85 (250)
T ss_dssp T-SEEEEEEETTHHHH--HHHHHHHHHHT-TT-EEEEEE-EE-------BHHHHH----HHHTTS--TT--EEEEEES-H
T ss_pred CCCcEEEEEcCCHHHH--HHHHHHHHHHH-cCCeEEEEecCCCC----CCHHHHH----HHHHHhcccCCCEEEEeCC-c
Confidence 4579999988775 22 23567778876 68888632100000 0000000 001122 358999999999 9
Q ss_pred hHHHHHhhhcC-CCCcEEEEeC
Q 003509 767 VILHASNLFRG-AVPPVISFNL 787 (814)
Q Consensus 767 TILrAArlf~~-s~~PILGINl 787 (814)
|+.-.++..+. .++|.+.|-+
T Consensus 86 ~i~D~~K~~A~~~~~p~isVPT 107 (250)
T PF13685_consen 86 TIIDIAKYAAFELGIPFISVPT 107 (250)
T ss_dssp HHHHHHHHHHHHHT--EEEEES
T ss_pred HHHHHHHHHHHhcCCCEEEecc
Confidence 99999999884 6999999864
No 190
>PLN02834 3-dehydroquinate synthase
Probab=63.25 E-value=12 Score=43.56 Aligned_cols=96 Identities=16% Similarity=0.107 Sum_probs=50.2
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHH
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTIL 769 (814)
.++++||+...-... ...++.+.|.+ .|+++.+...+.......+....+...+..-.+.-.++.|+||.||| |+++
T Consensus 100 g~rvlIVtD~~v~~~-~~~~v~~~L~~-~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~~~dr~~~VIAiGG-Gsv~ 176 (433)
T PLN02834 100 GKRVLVVTNETVAPL-YLEKVVEALTA-KGPELTVESVILPDGEKYKDMETLMKVFDKALESRLDRRCTFVALGG-GVIG 176 (433)
T ss_pred CCEEEEEECccHHHH-HHHHHHHHHHh-cCCceEEEEEEecCCcCCCCHHHHHHHHHHHHhcCCCcCcEEEEECC-hHHH
Confidence 478999995554222 66778888876 67654331110000000000000000000000000123459999999 7888
Q ss_pred HHHhhhc---CCCCcEEEEeCC
Q 003509 770 HASNLFR---GAVPPVISFNLG 788 (814)
Q Consensus 770 rAArlf~---~s~~PILGINlG 788 (814)
-++..++ ..++|++-|.+-
T Consensus 177 D~ak~~A~~y~rgiplI~VPTT 198 (433)
T PLN02834 177 DMCGFAAASYQRGVNFVQIPTT 198 (433)
T ss_pred HHHHHHHHHhcCCCCEEEECCc
Confidence 8887653 458999988874
No 191
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=63.18 E-value=23 Score=41.49 Aligned_cols=76 Identities=7% Similarity=0.155 Sum_probs=46.9
Q ss_pred cCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCH------HHHHHHHHHHh-cCCCCcEEEeCccCC
Q 003509 286 KGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTM------EQVEKFASLVS-NSSKKPLYLHSKEGV 358 (814)
Q Consensus 286 lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~------e~v~~fleiL~-d~~~~PVLVHCtAGK 358 (814)
..+..||++.+...... .......++|+|+......+. ..+..|+.... ...++++||+|..||
T Consensus 317 ~~~~~vI~~s~~~~~~~---------~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGk 387 (451)
T PF04179_consen 317 SEFDCVINCSESPTPKE---------SWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGK 387 (451)
T ss_pred CCcCEEEEcCCCccccc---------ccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcc
Confidence 47889999976641111 123567899999986554443 22333443322 224689999999999
Q ss_pred ChHH-HHHHHHHH
Q 003509 359 WRTY-AMVSRWRQ 370 (814)
Q Consensus 359 DRTG-al~aLLl~ 370 (814)
|..- ++.+++-.
T Consensus 388 DlSVgVaLaILc~ 400 (451)
T PF04179_consen 388 DLSVGVALAILCK 400 (451)
T ss_pred hHHHHHHHHHHHH
Confidence 9987 44444433
No 192
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=63.13 E-value=6.9 Score=48.48 Aligned_cols=117 Identities=16% Similarity=0.085 Sum_probs=66.7
Q ss_pred ccCCEEEEEecCCc-hHHH-HHHHHHHHHhcCCCeEEEEccchhh-Hhh---------------cCCCCccceeeeccCc
Q 003509 688 TTPRTVLVLKKPGP-ALME-EAKEVASFLYHQEKMNILVEPDVHD-IFA---------------RIPGFGFVQTFYLQDT 749 (814)
Q Consensus 688 ~~~kkVlIV~K~~~-ea~~-~a~eLi~~L~e~~Gi~V~ve~~~a~-~l~---------------~~p~~~~v~~~~~~~~ 749 (814)
++.++|+|+.--++ .-+. .++.++.+... +|.+|+--.+-.+ .+. ..++. .+.+-...+.
T Consensus 387 ~~~~~IaIltsGG~apGmNaairavv~~a~~-~g~~v~gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt-~LGT~R~~~~ 464 (762)
T cd00764 387 KTNLNIAIVNVGAPAAGMNAAVRSAVRYGLA-HGHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGRGGS-ELGTKRTLPK 464 (762)
T ss_pred ccccEEEEEecCCCchhHHHHHHHHHHHHHH-CCCEEEEEecCHHHhcCCCcccCCHHHHHHHHhCCcc-cccccCCCcH
Confidence 34579999998887 4443 45678877776 6888875333111 110 01110 0000000000
Q ss_pred ccc--------cCcccEEEEEcCchhHHHHHhhhc------CCCCcEEEEeC-------C---CcccCCCCCcccHHHHH
Q 003509 750 SDL--------HERVDFVACLGGDGVILHASNLFR------GAVPPVISFNL-------G---SLGFLTSHPVSSYLNSL 805 (814)
Q Consensus 750 ~~l--------~~~vDLVIvLGGDGTILrAArlf~------~s~~PILGINl-------G---rLGFLTe~~~dei~eaL 805 (814)
+++ ..++|.+|+||||||+-.+..+.. ...+||+||-. | ++||=|.++ .+-+++
T Consensus 465 ~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd~siGfdTAln--~~~~~i 542 (762)
T cd00764 465 KDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALN--ALMKYC 542 (762)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcCCCCHHHHHH--HHHHHH
Confidence 111 247999999999999987776654 25799999942 4 477766533 333344
Q ss_pred hhh
Q 003509 806 CFL 808 (814)
Q Consensus 806 e~L 808 (814)
++|
T Consensus 543 d~i 545 (762)
T cd00764 543 DRI 545 (762)
T ss_pred HHH
Confidence 443
No 193
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=63.10 E-value=19 Score=33.11 Aligned_cols=82 Identities=10% Similarity=0.041 Sum_probs=44.6
Q ss_pred cCCCCHhhHHHHHHcC--CcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHH-HHHHHHhcCCCC
Q 003509 272 GGQVTEEGLKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVE-KFASLVSNSSKK 348 (814)
Q Consensus 272 SGqpT~eDla~L~~lG--IKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~-~fleiL~d~~~~ 348 (814)
+..++++++..+.+.| --.|||.|+.. + +. .-...|. +++|... +. .....+ ..+.
T Consensus 7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~-e---~~-----~ghIpgA--~~ip~~~--------l~~~~~~~i--~~~~ 65 (110)
T cd01521 7 AFETDCWDVAIALKNGKPDFVLVDVRSAE-A---YA-----RGHVPGA--INLPHRE--------ICENATAKL--DKEK 65 (110)
T ss_pred eeecCHHHHHHHHHcCCCCEEEEECCCHH-H---Hh-----cCCCCCC--EeCCHHH--------hhhHhhhcC--CCCC
Confidence 3467888887776554 24799999875 1 11 0112232 3444321 11 111222 3567
Q ss_pred cEEEeCccCCC-hHHHHHHHHHHhCCCC
Q 003509 349 PLYLHSKEGVW-RTYAMVSRWRQYMARC 375 (814)
Q Consensus 349 PVLVHCtAGKD-RTGal~aLLl~l~GV~ 375 (814)
||+++|..|.. |+..++..++ .+|.+
T Consensus 66 ~vvvyc~~g~~~~s~~~a~~l~-~~G~~ 92 (110)
T cd01521 66 LFVVYCDGPGCNGATKAALKLA-ELGFP 92 (110)
T ss_pred eEEEEECCCCCchHHHHHHHHH-HcCCe
Confidence 99999998863 5554444443 35763
No 194
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=63.06 E-value=11 Score=44.19 Aligned_cols=67 Identities=18% Similarity=0.186 Sum_probs=39.1
Q ss_pred cEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHH
Q 003509 289 KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRW 368 (814)
Q Consensus 289 KTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d~~~~PVLVHCtAGKDRTGal~aLL 368 (814)
..+||.|+++ |-... .....+++.+|+|+. .+...+.-+ ..++|++++|.+|. |+..++..+
T Consensus 408 ~~lIDVR~~~-E~~~~------hI~g~~~~a~niP~~--------~l~~~~~~l--~~~~~iivyC~~G~-rS~~aa~~L 469 (482)
T PRK01269 408 DVIIDIRSPD-EQEDK------PLKLEGVEVKSLPFY--------KLSTQFGDL--DQSKTYLLYCDRGV-MSRLQALYL 469 (482)
T ss_pred CEEEECCCHH-HHhcC------CCCCCCceEEECCHH--------HHHHHHhhc--CCCCeEEEECCCCH-HHHHHHHHH
Confidence 3689999876 21100 011113667777764 222222222 34679999999998 988776666
Q ss_pred HHhCCC
Q 003509 369 RQYMAR 374 (814)
Q Consensus 369 l~l~GV 374 (814)
.. +|.
T Consensus 470 ~~-~G~ 474 (482)
T PRK01269 470 RE-QGF 474 (482)
T ss_pred HH-cCC
Confidence 44 465
No 195
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=63.05 E-value=9.6 Score=43.92 Aligned_cols=88 Identities=22% Similarity=0.272 Sum_probs=47.7
Q ss_pred ccCCEEEEEecCCc---hHHHHHHH-HHHHHhcCCCeEEEEccc-hhhHhhcCCCCccceeeeccCcccccCcccEEEEE
Q 003509 688 TTPRTVLVLKKPGP---ALMEEAKE-VASFLYHQEKMNILVEPD-VHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACL 762 (814)
Q Consensus 688 ~~~kkVlIV~K~~~---ea~~~a~e-Li~~L~e~~Gi~V~ve~~-~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvL 762 (814)
..||+|.|+.||-. .+.....+ ..-.|+ ..|+.|-+-.. -..... + -.+.+...-|+|+|.
T Consensus 58 ~~~Kkv~V~~Np~ank~~~r~~f~kna~P~lH-LaG~~V~Ivktd~~gqak---------~----l~e~~~t~~Dii~Va 123 (535)
T KOG4435|consen 58 TRPKKVFVLVNPEANKRGCRDQFNKNALPLLH-LAGVQVDIVKTDNQGQAK---------A----LAEAVDTQEDIIYVA 123 (535)
T ss_pred cccceEEEEechhhccchhhhhhhcccchhee-eccceEEEEecCcHHHHH---------H----HHHHhccCCCeEEEe
Confidence 35799999999874 24443332 223333 25877754221 000000 0 011222234999999
Q ss_pred cCchhHHHHHhh-hcC--CCCcEEEEeCCC
Q 003509 763 GGDGVILHASNL-FRG--AVPPVISFNLGS 789 (814)
Q Consensus 763 GGDGTILrAArl-f~~--s~~PILGINlGr 789 (814)
|||||+=-++.- |++ ...||-=+-.|+
T Consensus 124 GGDGT~~eVVTGi~Rrr~~~~pv~~~P~G~ 153 (535)
T KOG4435|consen 124 GGDGTIGEVVTGIFRRRKAQLPVGFYPGGY 153 (535)
T ss_pred cCCCcHHHhhHHHHhcccccCceeeccCcc
Confidence 999999877763 333 356665444453
No 196
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=63.04 E-value=8.9 Score=43.01 Aligned_cols=76 Identities=20% Similarity=0.220 Sum_probs=44.0
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchhH
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGTI 768 (814)
.++++||+...-.....+.++.+.|.+ .|+++.+...+. ..|....+... .... ..++|+||.||| |++
T Consensus 24 ~~~~liv~~~~~~~~~~~~~v~~~L~~-~g~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~d~IIaiGG-GSv 93 (370)
T cd08192 24 IKRPLIVTDPGLAALGLVARVLALLED-AGLAAALFDEVP----PNPTEAAVEAG----LAAYRAGGCDGVIAFGG-GSA 93 (370)
T ss_pred CCeEEEEcCcchhhCccHHHHHHHHHH-cCCeEEEeCCCC----CCCCHHHHHHH----HHHHHhcCCCEEEEeCC-chH
Confidence 478999986554333456788888887 688775432211 01111111000 0011 257999999999 778
Q ss_pred HHHHhhh
Q 003509 769 LHASNLF 775 (814)
Q Consensus 769 LrAArlf 775 (814)
+-+++.+
T Consensus 94 iD~aK~i 100 (370)
T cd08192 94 LDLAKAV 100 (370)
T ss_pred HHHHHHH
Confidence 8777664
No 197
>PRK07567 glutamine amidotransferase; Provisional
Probab=62.86 E-value=11 Score=40.32 Aligned_cols=36 Identities=11% Similarity=-0.061 Sum_probs=25.1
Q ss_pred CcccEEEEEcCchhH------------------HHHHhhhcCCCCcEEEEeCCC
Q 003509 754 ERVDFVACLGGDGVI------------------LHASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 754 ~~vDLVIvLGGDGTI------------------LrAArlf~~s~~PILGINlGr 789 (814)
+++|.+|+.||-++. ..+.+.+...++|||||-+|+
T Consensus 50 ~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~ 103 (242)
T PRK07567 50 DDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGV 103 (242)
T ss_pred hhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhH
Confidence 468999999996432 122333336689999999874
No 198
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=62.62 E-value=21 Score=40.78 Aligned_cols=81 Identities=17% Similarity=0.257 Sum_probs=46.9
Q ss_pred CCCHhhHHHHHHcCC-cEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEE
Q 003509 274 QVTEEGLKWLMEKGY-KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYL 352 (814)
Q Consensus 274 qpT~eDla~L~~lGI-KTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d~~~~PVLV 352 (814)
.++++++..+.+.|- -.|||+|+++ + +. .....| -+++|+.... ..+. +..+ ..++|+++
T Consensus 288 ~Is~~el~~~l~~~~~~~lIDvR~~~-e---f~-----~ghIpG--Ainip~~~l~--~~~~----~~~l--~~d~~iVv 348 (392)
T PRK07878 288 TITPRELKEWLDSGKKIALIDVREPV-E---WD-----IVHIPG--AQLIPKSEIL--SGEA----LAKL--PQDRTIVL 348 (392)
T ss_pred ccCHHHHHHHHhCCCCeEEEECCCHH-H---Hh-----cCCCCC--CEEcChHHhc--chhH----HhhC--CCCCcEEE
Confidence 578888888776653 3699999975 2 11 011233 3456654211 1111 1122 35679999
Q ss_pred eCccCCChHHHHHHHHHHhCCCC
Q 003509 353 HSKEGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 353 HCtAGKDRTGal~aLLl~l~GV~ 375 (814)
+|..|. |+..++..++. .|.+
T Consensus 349 yC~~G~-rS~~aa~~L~~-~G~~ 369 (392)
T PRK07878 349 YCKTGV-RSAEALAALKK-AGFS 369 (392)
T ss_pred EcCCCh-HHHHHHHHHHH-cCCC
Confidence 999997 87755544443 4654
No 199
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=62.56 E-value=6.6 Score=50.88 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=27.8
Q ss_pred CcccEEEEEcCchhHHHHHhhhcC----------CCCcEEEEe
Q 003509 754 ERVDFVACLGGDGVILHASNLFRG----------AVPPVISFN 786 (814)
Q Consensus 754 ~~vDLVIvLGGDGTILrAArlf~~----------s~~PILGIN 786 (814)
.+.|.+|+||||||+=.|+.+... ..+||+||-
T Consensus 799 ~~Id~LVvIGGDgS~t~A~~Lae~~~~~~~~~~~~gi~VIgVP 841 (1328)
T PTZ00468 799 FNMRAIAIVGNSEAATFGASLSEQLICMSLNGMKSEIPVVFVP 841 (1328)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHhhhccccccCCCcEEEeC
Confidence 379999999999999888887543 479999994
No 200
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=62.54 E-value=12 Score=41.99 Aligned_cols=91 Identities=18% Similarity=0.132 Sum_probs=51.6
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEE--ccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchh
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILV--EPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV 767 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~v--e~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGT 767 (814)
.++++||+...-.. ....++.+.|.+ .|+++.+ -+.... .+....+......-.+.-..+.|+||.||| |+
T Consensus 31 ~~~~livtd~~~~~-~~~~~v~~~L~~-~gi~~~~~~~~~~e~----~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gs 103 (358)
T PRK00002 31 GKKVAIVTDETVAP-LYLEKLRASLEA-AGFEVDVVVLPDGEQ----YKSLETLEKIYDALLEAGLDRSDTLIALGG-GV 103 (358)
T ss_pred CCeEEEEECCchHH-HHHHHHHHHHHh-cCCceEEEEeCCCCC----CCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-cH
Confidence 47899998655422 366778888876 6765542 111000 011000000000000001135699999998 89
Q ss_pred HHHHHhhhc---CCCCcEEEEeC
Q 003509 768 ILHASNLFR---GAVPPVISFNL 787 (814)
Q Consensus 768 ILrAArlf~---~s~~PILGINl 787 (814)
++-++..++ ...+|++.|.+
T Consensus 104 v~D~aK~iA~~~~~gip~i~IPT 126 (358)
T PRK00002 104 IGDLAGFAAATYMRGIRFIQVPT 126 (358)
T ss_pred HHHHHHHHHHHhcCCCCEEEcCc
Confidence 999998875 56899999876
No 201
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=62.30 E-value=32 Score=31.75 Aligned_cols=75 Identities=20% Similarity=0.187 Sum_probs=39.1
Q ss_pred CCHhhHHHHHHcC------CcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCC
Q 003509 275 VTEEGLKWLMEKG------YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKK 348 (814)
Q Consensus 275 pT~eDla~L~~lG------IKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d~~~~ 348 (814)
++++++..+.+.+ =-.|||.|+.+ +. .....| -+++|+.... +.+......+......
T Consensus 4 is~~el~~~l~~~~~~~~~~~~iiDvR~~e-----f~-----~ghipg--Ai~ip~~~~~----~~~~~~~~~~~~~~~~ 67 (113)
T cd01443 4 ISPEELVALLENSDSNAGKDFVVVDLRRDD-----YE-----GGHIKG--SINLPAQSCY----QTLPQVYALFSLAGVK 67 (113)
T ss_pred cCHHHHHHHHhCCccccCCcEEEEECCchh-----cC-----CCcccC--ceecchhHHH----HHHHHHHHHhhhcCCC
Confidence 5677777776665 23699999752 11 011223 3566765211 1122222222123456
Q ss_pred cEEEeCccCCChHHHHH
Q 003509 349 PLYLHSKEGVWRTYAMV 365 (814)
Q Consensus 349 PVLVHCtAGKDRTGal~ 365 (814)
+|++||..|-.|+-.++
T Consensus 68 ~iv~~C~~~g~rs~~a~ 84 (113)
T cd01443 68 LAIFYCGSSQGRGPRAA 84 (113)
T ss_pred EEEEECCCCCcccHHHH
Confidence 89999997533765443
No 202
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=62.00 E-value=16 Score=41.72 Aligned_cols=96 Identities=14% Similarity=0.168 Sum_probs=51.1
Q ss_pred CCEEEEEecCCc-hH-HHHHHHHHHHHhcCCCeEEEEccchhhHhhcC-CC-C-ccceeeeccCcccccCcccEEEEEcC
Q 003509 690 PRTVLVLKKPGP-AL-MEEAKEVASFLYHQEKMNILVEPDVHDIFARI-PG-F-GFVQTFYLQDTSDLHERVDFVACLGG 764 (814)
Q Consensus 690 ~kkVlIV~K~~~-ea-~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~-p~-~-~~v~~~~~~~~~~l~~~vDLVIvLGG 764 (814)
.++++||+.+.- +. ......+.+.|.+ .|+++.+........... +. . ..+......-.+.-.++.|+||.|||
T Consensus 42 ~~r~liVtD~~v~~~~~~l~~~v~~~L~~-~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiGG 120 (389)
T PRK06203 42 PKKVLVVIDSGVLRAHPDLLEQITAYFAA-HADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIGG 120 (389)
T ss_pred CCeEEEEECchHHHhhhhHHHHHHHHHHh-cCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeCC
Confidence 488999995543 32 3456788888876 576443211111000000 00 0 00000000000111245679999998
Q ss_pred chhHHHHHhhhc---CCCCcEEEEeC
Q 003509 765 DGVILHASNLFR---GAVPPVISFNL 787 (814)
Q Consensus 765 DGTILrAArlf~---~s~~PILGINl 787 (814)
|+++-++..++ ..++|++-|.+
T Consensus 121 -Gsv~D~ak~iA~~~~rgip~I~IPT 145 (389)
T PRK06203 121 -GAVLDMVGYAAATAHRGVRLIRIPT 145 (389)
T ss_pred -cHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 88898887764 45789988875
No 203
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=61.88 E-value=17 Score=39.06 Aligned_cols=83 Identities=12% Similarity=0.072 Sum_probs=45.4
Q ss_pred EEEEEecCCc----hHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchh
Q 003509 692 TVLVLKKPGP----ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV 767 (814)
Q Consensus 692 kVlIV~K~~~----ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGT 767 (814)
.|+|..+... .........++.+....|+.|.+....... ...+++.+.+|-+|..||...
T Consensus 9 ~Igi~~~~~~~~~~~~~~~~~~y~~~i~~aGg~pv~lp~~~~~~---------------~~~~~~l~~~DGlil~GG~~d 73 (254)
T PRK11366 9 VIGVVMCRNRLKGHATQTLQEKYLNAIIHAGGLPIALPHALAEP---------------SLLEQLLPKLDGIYLPGSPSN 73 (254)
T ss_pred EEEEeCCCcccCcchHHHHHHHHHHHHHHCCCEEEEecCCCCCH---------------HHHHHHHHhCCEEEeCCCCCC
Confidence 5888864322 111233456666665356667654221100 011223356899999998322
Q ss_pred H----------------------HHHHhhhcCCCCcEEEEeCCC
Q 003509 768 I----------------------LHASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 768 I----------------------LrAArlf~~s~~PILGINlGr 789 (814)
+ +...+.+....+|||||-.|.
T Consensus 74 v~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~ 117 (254)
T PRK11366 74 VQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGL 117 (254)
T ss_pred cCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhH
Confidence 2 344444455689999998863
No 204
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=61.57 E-value=14 Score=41.68 Aligned_cols=75 Identities=16% Similarity=0.247 Sum_probs=42.7
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchhH
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGTI 768 (814)
.++++||+...-.......++.+.|.+ .|+++.+...+.. .|....+... .+.. ..++|+||.||| |.+
T Consensus 29 ~~r~lvvt~~~~~~~g~~~~v~~~L~~-~~i~~~~~~~v~~----~p~~~~v~~~----~~~~~~~~~D~IiaiGG-GSv 98 (379)
T TIGR02638 29 FKKALVVTDKDLIKFGVADKVTDLLDE-AGIAYELFDEVKP----NPTITVVKAG----VAAFKASGADYLIAIGG-GSP 98 (379)
T ss_pred CCEEEEEcCcchhhccchHHHHHHHHH-CCCeEEEECCCCC----CcCHHHHHHH----HHHHHhcCCCEEEEeCC-hHH
Confidence 479999986543223356778888876 6877755332111 1111001000 0011 347899999999 777
Q ss_pred HHHHhh
Q 003509 769 LHASNL 774 (814)
Q Consensus 769 LrAArl 774 (814)
+-+++.
T Consensus 99 iD~aKa 104 (379)
T TIGR02638 99 IDTAKA 104 (379)
T ss_pred HHHHHH
Confidence 777754
No 205
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=61.53 E-value=33 Score=37.06 Aligned_cols=97 Identities=13% Similarity=0.009 Sum_probs=47.7
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcccCcch-h-hhhHHhhhcCCcEEEEeecCCC---------CCCCHHHHHHHHHHHh
Q 003509 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFY-E-AAIDDAILSGKVELIKIPVEVR---------TAPTMEQVEKFASLVS 343 (814)
Q Consensus 275 pT~eDla~L~~lGIKTVIDLRsee~E~~~~-p-~~e~~~~e~~GI~yVhIPV~d~---------~~ps~e~v~~fleiL~ 343 (814)
++.+++....+.+=-.|||.|+.. ..... . ..+-..-...|. +++|+... ..+..+.++++++-+-
T Consensus 7 vs~~~l~~~l~~~~~~iiD~R~~~-~~~~~~~~~~~y~~GHIpGA--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 83 (281)
T PRK11493 7 VAADWLAEHIDDPEIQIIDARMAP-PGQEDRDVAAEYRAGHIPGA--VFFDIEALSDHTSPLPHMMPRPETFAVAMRELG 83 (281)
T ss_pred cCHHHHHHhcCCCCeEEEEeeCCC-CCccccchHHHHHhCcCCCC--EEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcC
Confidence 466666665554435799999853 11100 0 011011122343 34443211 1234566666665543
Q ss_pred cCCCCcEEEeCccCCChHHHHHHHHHHhCCCC
Q 003509 344 NSSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 344 d~~~~PVLVHCtAGKDRTGal~aLLl~l~GV~ 375 (814)
-..+.||+|+|..|......++.++ ..+|..
T Consensus 84 i~~d~~VVvyc~~~~~~a~~~~~~l-~~~G~~ 114 (281)
T PRK11493 84 VNQDKHLVVYDEGNLFSAPRAWWML-RTFGVE 114 (281)
T ss_pred CCCCCEEEEECCCCCchHHHHHHHH-HHhcCC
Confidence 3457799999987752233333333 345654
No 206
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=61.33 E-value=29 Score=42.10 Aligned_cols=96 Identities=11% Similarity=-0.019 Sum_probs=49.3
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCC-----CCCCCHHHHHHHHHHHhcCCCCc
Q 003509 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEV-----RTAPTMEQVEKFASLVSNSSKKP 349 (814)
Q Consensus 275 pT~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d-----~~~ps~e~v~~fleiL~d~~~~P 349 (814)
.+.+++....+.+=-.|||-|+.+ +-..........=...|. +++|..+ ....+.+.++++++-+--..++|
T Consensus 149 v~~e~v~~~l~~~~~~iIDaR~~~-ef~G~~~~~~r~GHIPGA--vnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~~~ 225 (610)
T PRK09629 149 ATREYLQSRLGAADLAIWDARAPT-EYSGEKVVAAKGGHIPGA--VNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKE 225 (610)
T ss_pred ccHHHHHHhhCCCCcEEEECCCcc-ccCCcccccccCCCCCCC--eecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCCCC
Confidence 455555544333223589999876 321110000000011232 3345321 11244566666655432245679
Q ss_pred EEEeCccCCChHHHHHHHHHHhCCCC
Q 003509 350 LYLHSKEGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 350 VLVHCtAGKDRTGal~aLLl~l~GV~ 375 (814)
|++||..|. |++.++..+ .++|.+
T Consensus 226 VVvYC~sG~-rAa~~~~~L-~~lG~~ 249 (610)
T PRK09629 226 VITHCQTHH-RSGFTYLVA-KALGYP 249 (610)
T ss_pred EEEECCCCh-HHHHHHHHH-HHcCCC
Confidence 999999997 877665544 457875
No 207
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=61.23 E-value=15 Score=40.83 Aligned_cols=85 Identities=18% Similarity=0.199 Sum_probs=52.1
Q ss_pred CEEEEEecCCc-hHHHHHHHHHHHHhcCCCeEEEEcc-chhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhH
Q 003509 691 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEP-DVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 768 (814)
Q Consensus 691 kkVlIV~K~~~-ea~~~a~eLi~~L~e~~Gi~V~ve~-~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTI 768 (814)
++++||+.+.- ... ..++.+.|.+ .|+++.+.. +... .|....+... ...+.+++|+||.||| |++
T Consensus 25 ~kvlivtd~~~~~~~--~~~i~~~L~~-~~~~~~i~~~~~~~----~p~~~~v~~~----~~~~~~~~d~IIaiGG-Gsv 92 (332)
T cd08549 25 SKIMIVCGNNTYKVA--GKEIIERLES-NNFTKEVLERDSLL----IPDEYELGEV----LIKLDKDTEFLLGIGS-GTI 92 (332)
T ss_pred CcEEEEECCcHHHHH--HHHHHHHHHH-cCCeEEEEecCCCC----CCCHHHHHHH----HHHhhcCCCEEEEECC-cHH
Confidence 68999987665 332 3778888876 676654321 1110 0111111100 0112238999999999 899
Q ss_pred HHHHhhhcC-CCCcEEEEeC
Q 003509 769 LHASNLFRG-AVPPVISFNL 787 (814)
Q Consensus 769 LrAArlf~~-s~~PILGINl 787 (814)
+-++..++- ..+|++-|.+
T Consensus 93 ~D~aK~iA~~~gip~I~VPT 112 (332)
T cd08549 93 IDLVKFVSFKVGKPFISVPT 112 (332)
T ss_pred HHHHHHHHHHcCCCEEEeCC
Confidence 999988763 5889999975
No 208
>KOG1115 consensus Ceramide kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=60.98 E-value=7.6 Score=44.74 Aligned_cols=88 Identities=18% Similarity=0.287 Sum_probs=49.8
Q ss_pred cccccCCchhHH----------hhcccccCCEEEEEecCCc---hHHHHHHHHHHHHhc-CCCeEEEEccchhhHhhcCC
Q 003509 671 SLAFTHPSTQQQ----------MLMWKTTPRTVLVLKKPGP---ALMEEAKEVASFLYH-QEKMNILVEPDVHDIFARIP 736 (814)
Q Consensus 671 ~~~~~~ps~~~~----------~l~w~~~~kkVlIV~K~~~---ea~~~a~eLi~~L~e-~~Gi~V~ve~~~a~~l~~~p 736 (814)
...|-|+.+|.- ...-.+.||+++|+.+|.. ....+.+.+..++-- .-..+|++-+..-..+.
T Consensus 129 q~tf~~~~~q~c~~W~~~l~~~L~k~~~RPknllvFinPfgGkG~g~ki~e~V~~~F~la~v~tkvivTErAnhA~d--- 205 (516)
T KOG1115|consen 129 QFTFGHMDLQTCQSWMDQLNYSLIKEVERPKNLLVFINPFGGKGNGSKIWETVSKIFILAKVNTKVIVTERANHAFD--- 205 (516)
T ss_pred cceEecccHHHHHHHHHHHHHHHHHHhcCCccEEEEEcCCCCCCcccchhhhhhhhEEeeecceeEEEEccccchhh---
Confidence 455667765531 1223568999999999984 455566554443321 14566766554222111
Q ss_pred CCccceeeeccCcccccCcccEEEEEcCchhH
Q 003509 737 GFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 768 (814)
Q Consensus 737 ~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTI 768 (814)
+.++...+++ ...|-||++||||-|
T Consensus 206 ------~~~ei~~~~~-~~yDGiv~VGGDG~F 230 (516)
T KOG1115|consen 206 ------VMAEIQNKEL-HTYDGIVAVGGDGFF 230 (516)
T ss_pred ------hhhhCCHhhh-hhcccEEEecCchhH
Confidence 0111122233 468999999999865
No 209
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=60.87 E-value=28 Score=36.53 Aligned_cols=36 Identities=22% Similarity=0.304 Sum_probs=24.0
Q ss_pred CcccEEEEEcCchhH------------HHHHhhhcCCCCcEEEEeCCCc
Q 003509 754 ERVDFVACLGGDGVI------------LHASNLFRGAVPPVISFNLGSL 790 (814)
Q Consensus 754 ~~vDLVIvLGGDGTI------------LrAArlf~~s~~PILGINlGrL 790 (814)
..+|.|| ++|-|.+ +...+.+....+|||||=+|.=
T Consensus 38 ~~~d~iI-lPG~g~~~~~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Q 85 (210)
T CHL00188 38 AQVHALV-LPGVGSFDLAMKKLEKKGLITPIKKWIAEGNPFIGICLGLH 85 (210)
T ss_pred hhCCEEE-ECCCCchHHHHHHHHHCCHHHHHHHHHHcCCCEEEECHHHH
Confidence 3578877 6776653 2334444446899999999863
No 210
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=60.25 E-value=27 Score=39.38 Aligned_cols=72 Identities=18% Similarity=0.267 Sum_probs=42.9
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchhH
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGTI 768 (814)
-++++||+...-. .+.++...|.+ .|+++.+... .. .|....+... .... ..++|+||.||| |+.
T Consensus 22 ~~r~livtd~~~~---~~~~v~~~L~~-~g~~~~~~~~-~~----~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS~ 87 (374)
T cd08183 22 GRRVLLVTGASSL---RAAWLIEALRA-AGIEVTHVVV-AG----EPSVELVDAA----VAEARNAGCDVVIAIGG-GSV 87 (374)
T ss_pred CCcEEEEECCchH---HHHHHHHHHHH-cCCeEEEecC-CC----CcCHHHHHHH----HHHHHhcCCCEEEEecC-chH
Confidence 3789999865443 67788888887 7887755321 10 1111011000 0011 247999999999 788
Q ss_pred HHHHhhh
Q 003509 769 LHASNLF 775 (814)
Q Consensus 769 LrAArlf 775 (814)
+-+++.+
T Consensus 88 ~D~aK~i 94 (374)
T cd08183 88 IDAGKAI 94 (374)
T ss_pred HHHHHHH
Confidence 8777764
No 211
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=60.06 E-value=20 Score=36.68 Aligned_cols=70 Identities=20% Similarity=0.152 Sum_probs=44.3
Q ss_pred EEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHHH-
Q 003509 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH- 770 (814)
Q Consensus 692 kVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTILr- 770 (814)
+|+|+.=.++ ..+..++|++ .|+++.+-.. .++ .+.+|.+|.-||.++...
T Consensus 1 ~igvl~~qg~-----~~e~~~~l~~-~g~~~~~v~~---------------------~~~-l~~~d~liipGG~~~~~~~ 52 (184)
T TIGR03800 1 KIGVLALQGA-----VREHARALEA-LGVEGVEVKR---------------------PEQ-LDEIDGLIIPGGESTTLSR 52 (184)
T ss_pred CEEEEEccCC-----HHHHHHHHHH-CCCEEEEECC---------------------hHH-hccCCEEEECCCCHHHHHH
Confidence 3666666665 2234467766 6776643211 112 246899999999998632
Q ss_pred ---------HHhhhcCCCCcEEEEeCCC
Q 003509 771 ---------ASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 771 ---------AArlf~~s~~PILGINlGr 789 (814)
..+.+...+.||+||-.|.
T Consensus 53 l~~~~~l~~~i~~~~~~g~pilGIC~G~ 80 (184)
T TIGR03800 53 LLDKYGMFEPLRNFILSGLPVFGTCAGL 80 (184)
T ss_pred HHHhccHHHHHHHHHHcCCcEEEECHHH
Confidence 2334445689999998875
No 212
>PRK08250 glutamine amidotransferase; Provisional
Probab=59.77 E-value=27 Score=37.08 Aligned_cols=77 Identities=16% Similarity=0.104 Sum_probs=43.8
Q ss_pred EEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhH---
Q 003509 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI--- 768 (814)
Q Consensus 692 kVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTI--- 768 (814)
+|+|+-+..-+-. ..+..|+.+ .|+++.+-.... + .....-..++|.+|+.||=.+.
T Consensus 2 ~i~vi~h~~~e~~---g~~~~~~~~-~g~~~~~~~~~~-------g---------~~~p~~~~~~d~vii~GGp~~~~~~ 61 (235)
T PRK08250 2 RVHFIIHESFEAP---GAYLKWAEN-RGYDISYSRVYA-------G---------EALPENADGFDLLIVMGGPQSPRTT 61 (235)
T ss_pred eEEEEecCCCCCc---hHHHHHHHH-CCCeEEEEEccC-------C---------CCCCCCccccCEEEECCCCCChhhc
Confidence 5777765554222 335666666 787775522110 0 0011112468999999994431
Q ss_pred ------------HHHHhhhcCCCCcEEEEeCC
Q 003509 769 ------------LHASNLFRGAVPPVISFNLG 788 (814)
Q Consensus 769 ------------LrAArlf~~s~~PILGINlG 788 (814)
....+.+...++|||||-+|
T Consensus 62 ~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G 93 (235)
T PRK08250 62 REECPYFDSKAEQRLINQAIKAGKAVIGVCLG 93 (235)
T ss_pred cccccccchHHHHHHHHHHHHcCCCEEEEChh
Confidence 23344454678999999876
No 213
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=59.25 E-value=15 Score=41.91 Aligned_cols=89 Identities=16% Similarity=0.096 Sum_probs=51.6
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHH
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTIL 769 (814)
.++++|++...-.......++.+.|++ .|+++.+...+.. .|....+... ... --..++|+||.||| |..|
T Consensus 49 ~~~~lvv~~~~~~~~g~~~~v~~~L~~-~gi~~~~~~~v~~----~P~~~~v~~~--~~~-~r~~~~D~IiavGG-GS~i 119 (395)
T PRK15454 49 LKHLFVMADSFLHQAGMTAGLTRSLAV-KGIAMTLWPCPVG----EPCITDVCAA--VAQ-LRESGCDGVIAFGG-GSVL 119 (395)
T ss_pred CCEEEEEcCcchhhCccHHHHHHHHHH-cCCeEEEECCCCC----CcCHHHHHHH--HHH-HHhcCcCEEEEeCC-hHHH
Confidence 478888876543334456778888887 7888765432211 1111000000 000 00358999999999 7777
Q ss_pred HHHhhhcC-------------------CCCcEEEEeC
Q 003509 770 HASNLFRG-------------------AVPPVISFNL 787 (814)
Q Consensus 770 rAArlf~~-------------------s~~PILGINl 787 (814)
-+++.++- ..+|++.|.+
T Consensus 120 D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPT 156 (395)
T PRK15454 120 DAAKAVALLVTNPDSTLAEMSETSVLQPRLPLIAIPT 156 (395)
T ss_pred HHHHHHHHHHhCCCccHHHHhcccccCCCCCEEEECC
Confidence 77765421 2469999975
No 214
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=59.11 E-value=16 Score=40.73 Aligned_cols=88 Identities=19% Similarity=0.231 Sum_probs=52.9
Q ss_pred CEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHHH
Q 003509 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (814)
Q Consensus 691 kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTILr 770 (814)
++++||+.+.-.......++.+.|.+ .|+++.+...+.. .+....+... ... --..++|+||.||| |+.+-
T Consensus 22 gr~lvVt~~~~~~~~~~~~v~~~L~~-~~i~~~~~~~~~~----~p~~~~v~~~--~~~-~~~~~~D~IIaiGG-GS~~D 92 (366)
T PF00465_consen 22 GRVLVVTDPSLSKSGLVDRVLDALEE-AGIEVQVFDGVGP----NPTLEDVDEA--AEQ-ARKFGADCIIAIGG-GSVMD 92 (366)
T ss_dssp TEEEEEEEHHHHHHTHHHHHHHHHHH-TTCEEEEEEEESS----S-BHHHHHHH--HHH-HHHTTSSEEEEEES-HHHHH
T ss_pred CCEEEEECchHHhCccHHHHHHHHhh-CceEEEEEecCCC----CCcHHHHHHH--HHH-HHhcCCCEEEEcCC-CCcCc
Confidence 49999997722444467889999977 7888865432211 0110000000 000 01348999999999 78888
Q ss_pred HHhhhcC---C-----------------CCcEEEEeC
Q 003509 771 ASNLFRG---A-----------------VPPVISFNL 787 (814)
Q Consensus 771 AArlf~~---s-----------------~~PILGINl 787 (814)
+++.+.- . .+|++.|.+
T Consensus 93 ~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPT 129 (366)
T PF00465_consen 93 AAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPT 129 (366)
T ss_dssp HHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEES
T ss_pred HHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeC
Confidence 8776542 1 179999986
No 215
>PRK09065 glutamine amidotransferase; Provisional
Probab=59.07 E-value=37 Score=36.10 Aligned_cols=36 Identities=14% Similarity=0.085 Sum_probs=26.2
Q ss_pred CcccEEEEEcCchhH----------HHHHhhhcCCCCcEEEEeCCC
Q 003509 754 ERVDFVACLGGDGVI----------LHASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 754 ~~vDLVIvLGGDGTI----------LrAArlf~~s~~PILGINlGr 789 (814)
..+|.||..||=++. +...+.+...++|||||-+|+
T Consensus 53 ~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~ 98 (237)
T PRK09065 53 DDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGH 98 (237)
T ss_pred hhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhH
Confidence 468999999998762 333444445789999998864
No 216
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=58.82 E-value=15 Score=34.89 Aligned_cols=46 Identities=15% Similarity=0.282 Sum_probs=31.6
Q ss_pred HHHHHHcCCcEEEEcCCCcc-cCcch-hhhhHHhhhcCCcEEEEeecC
Q 003509 280 LKWLMEKGYKTIVDIRAERV-KDNFY-EAAIDDAILSGKVELIKIPVE 325 (814)
Q Consensus 280 la~L~~lGIKTVIDLRsee~-E~~~~-p~~e~~~~e~~GI~yVhIPV~ 325 (814)
+..|+..||+.|||.|.-.. ..+.+ -......+...||.|+|+|-.
T Consensus 6 ~~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~L 53 (122)
T PF04343_consen 6 YDLLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPEL 53 (122)
T ss_pred HHHHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechhh
Confidence 45688899999999888741 11111 123345667789999999964
No 217
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=58.72 E-value=34 Score=31.46 Aligned_cols=78 Identities=19% Similarity=0.203 Sum_probs=39.7
Q ss_pred CCHhhHHHHHHcC--CcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEE
Q 003509 275 VTEEGLKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYL 352 (814)
Q Consensus 275 pT~eDla~L~~lG--IKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d~~~~PVLV 352 (814)
++++++..+...+ --.|||+|+.+ -... ...| -+|+|.... ...+.++.+...-..+.+++|
T Consensus 4 is~~~l~~~~~~~~~~~~iiDvR~~e-~~~~---------hi~g--A~~ip~~~l----~~~~~~~~~~~~~~~~~~iv~ 67 (113)
T cd01531 4 ISPAQLKGWIRNGRPPFQVVDVRDED-YAGG---------HIKG--SWHYPSTRF----KAQLNQLVQLLSGSKKDTVVF 67 (113)
T ss_pred CCHHHHHHHHHcCCCCEEEEEcCCcc-cCCC---------cCCC--CEecCHHHH----hhCHHHHHHHHhcCCCCeEEE
Confidence 5677777776654 23599999852 1110 1122 235554421 112223332221134579999
Q ss_pred eCccCCChHHHHHHHH
Q 003509 353 HSKEGVWRTYAMVSRW 368 (814)
Q Consensus 353 HCtAGKDRTGal~aLL 368 (814)
||..+..|....+..+
T Consensus 68 yC~~~~~r~~~aa~~l 83 (113)
T cd01531 68 HCALSQVRGPSAARKF 83 (113)
T ss_pred EeecCCcchHHHHHHH
Confidence 9984333777554433
No 218
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=58.47 E-value=22 Score=39.87 Aligned_cols=92 Identities=16% Similarity=0.107 Sum_probs=51.0
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHH
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTIL 769 (814)
.++++|++...-.. ....++.+.|....++++++-+.... .+....+......-.+.-..++|+||.||| |+++
T Consensus 23 ~~k~livtd~~v~~-~~~~~v~~~L~~~~~~~~~~~~~~e~----~k~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gsv~ 96 (344)
T cd08169 23 FDQYFFISDSGVAD-LIAHYIAEYLSKILPVHILVIEGGEE----YKTFETVTRILERAIALGANRRTAIVAVGG-GATG 96 (344)
T ss_pred CCeEEEEECccHHH-HHHHHHHHHHHhhcCceEEEeCCCCC----CCCHHHHHHHHHHHHHcCCCCCcEEEEECC-cHHH
Confidence 47899998755422 35667778875313565554322111 011100100000000111246899999998 8888
Q ss_pred HHHhhhc---CCCCcEEEEeC
Q 003509 770 HASNLFR---GAVPPVISFNL 787 (814)
Q Consensus 770 rAArlf~---~s~~PILGINl 787 (814)
-++..++ ...+|++-|.+
T Consensus 97 D~ak~vA~~~~rgip~i~VPT 117 (344)
T cd08169 97 DVAGFVASTLFRGIAFIRVPT 117 (344)
T ss_pred HHHHHHHHHhccCCcEEEecC
Confidence 8887765 35889999886
No 219
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=58.46 E-value=16 Score=36.71 Aligned_cols=62 Identities=18% Similarity=0.246 Sum_probs=39.2
Q ss_pred HHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchh------HHHHHhhhcCCCCc
Q 003509 709 EVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGV------ILHASNLFRGAVPP 781 (814)
Q Consensus 709 eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGT------ILrAArlf~~s~~P 781 (814)
.+++||.+ .|..+.+-+.... .+++ ....|.||..||-|+ .+...+.+...++|
T Consensus 11 ~~~~~l~~-~G~~~~~~~~~~~------------------~~~~~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~P 71 (178)
T cd01744 11 NILRELLK-RGCEVTVVPYNTD------------------AEEILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIP 71 (178)
T ss_pred HHHHHHHH-CCCeEEEEECCCC------------------HHHHhhcCCCEEEECCCCCChhHhHHHHHHHHHHHhCCCC
Confidence 46888887 6877765332110 0111 236899999999664 34455556667899
Q ss_pred EEEEeCCC
Q 003509 782 VISFNLGS 789 (814)
Q Consensus 782 ILGINlGr 789 (814)
|+||-+|.
T Consensus 72 vlGIC~G~ 79 (178)
T cd01744 72 IFGICLGH 79 (178)
T ss_pred EEEECHHH
Confidence 99998863
No 220
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=58.21 E-value=19 Score=40.40 Aligned_cols=85 Identities=15% Similarity=0.137 Sum_probs=52.4
Q ss_pred CEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchhHH
Q 003509 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVIL 769 (814)
Q Consensus 691 kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGTIL 769 (814)
++++||+...-. .....++.+.|.. .|+++.+.. +. ..|....+... .+.. ..++|+||.||| |+++
T Consensus 30 ~~~livtd~~~~-~~~~~~v~~~l~~-~~~~~~~~~-~~----~ep~~~~v~~~----~~~~~~~~~d~IIavGG-Gsv~ 97 (366)
T PRK09423 30 KRALVIADEFVL-GIVGDRVEASLKE-AGLTVVFEV-FN----GECSDNEIDRL----VAIAEENGCDVVIGIGG-GKTL 97 (366)
T ss_pred CEEEEEEChhHH-HHHHHHHHHHHHh-CCCeEEEEE-eC----CCCCHHHHHHH----HHHHHhcCCCEEEEecC-hHHH
Confidence 789999854432 1266788888876 677764321 11 01111111100 0011 247899999999 8999
Q ss_pred HHHhhhcC-CCCcEEEEeC
Q 003509 770 HASNLFRG-AVPPVISFNL 787 (814)
Q Consensus 770 rAArlf~~-s~~PILGINl 787 (814)
-+++.++. ..+|++.|.+
T Consensus 98 D~aK~iA~~~~~p~i~IPT 116 (366)
T PRK09423 98 DTAKAVADYLGVPVVIVPT 116 (366)
T ss_pred HHHHHHHHHcCCCEEEeCC
Confidence 99988763 5789999975
No 221
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=58.09 E-value=15 Score=40.96 Aligned_cols=92 Identities=14% Similarity=0.160 Sum_probs=51.0
Q ss_pred cCCEEEEEecCCchHHHHHHHHHHHHhcCCCeEE--EEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCch
Q 003509 689 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNI--LVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (814)
Q Consensus 689 ~~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V--~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDG 766 (814)
..++++|++.+.-.. ....++.+.|.. .|+++ ++-+.... .+....+......-.+.-..+.|+||.||| |
T Consensus 23 ~~~~~livtd~~~~~-~~~~~l~~~L~~-~g~~~~~~~~~~~e~----~~~~~~v~~~~~~~~~~~~~r~d~IIaiGG-G 95 (345)
T cd08195 23 KGSKILIVTDENVAP-LYLEKLKAALEA-AGFEVEVIVIPAGEA----SKSLETLEKLYDALLEAGLDRKSLIIALGG-G 95 (345)
T ss_pred CCCeEEEEECCchHH-HHHHHHHHHHHh-cCCceEEEEeCCCCC----cCCHHHHHHHHHHHHHcCCCCCCeEEEECC-h
Confidence 347899998655422 356778888876 56444 22111000 011000000000000011234599999998 8
Q ss_pred hHHHHHhhhc---CCCCcEEEEeC
Q 003509 767 VILHASNLFR---GAVPPVISFNL 787 (814)
Q Consensus 767 TILrAArlf~---~s~~PILGINl 787 (814)
+++-++..++ ...+|++.|.+
T Consensus 96 sv~D~ak~vA~~~~rgip~i~VPT 119 (345)
T cd08195 96 VVGDLAGFVAATYMRGIDFIQIPT 119 (345)
T ss_pred HHHhHHHHHHHHHhcCCCeEEcch
Confidence 8888888775 46899998875
No 222
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=58.09 E-value=12 Score=41.52 Aligned_cols=85 Identities=19% Similarity=0.174 Sum_probs=50.9
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchhH
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGTI 768 (814)
.++++||+...-... ...++.+.|.+ .++.++-+ ....+....+... .+.. ..++|+||.||| |++
T Consensus 23 ~~~~livt~~~~~~~-~~~~v~~~l~~-~~~~~~~~------~~~~p~~~~v~~~----~~~~~~~~~d~IIaiGG-Gs~ 89 (337)
T cd08177 23 ASRALVLTTPSLATK-LAERVASALGD-RVAGTFDG------AVMHTPVEVTEAA----VAAAREAGADGIVAIGG-GST 89 (337)
T ss_pred CCeEEEEcChHHHHH-HHHHHHHHhcc-CCcEEeCC------CCCCCCHHHHHHH----HHHHHhcCCCEEEEeCC-cHH
Confidence 478999986543222 67788888876 45443311 0000110000000 0011 257999999998 899
Q ss_pred HHHHhhhcC-CCCcEEEEeC
Q 003509 769 LHASNLFRG-AVPPVISFNL 787 (814)
Q Consensus 769 LrAArlf~~-s~~PILGINl 787 (814)
+-+++.++. ..+|++.|.+
T Consensus 90 iD~aK~ia~~~~~p~i~IPT 109 (337)
T cd08177 90 IDLAKAIALRTGLPIIAIPT 109 (337)
T ss_pred HHHHHHHHHHhcCCEEEEcC
Confidence 999998764 4789999874
No 223
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=58.02 E-value=25 Score=36.10 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=26.1
Q ss_pred CcccEEEEEcCchhHH----------HHHhhhcCCCCcEEEEeCCC
Q 003509 754 ERVDFVACLGGDGVIL----------HASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 754 ~~vDLVIvLGGDGTIL----------rAArlf~~s~~PILGINlGr 789 (814)
.++|.||.-||-++.. ...+.+...++||+||-.|.
T Consensus 42 ~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~ 87 (200)
T PRK13527 42 PDCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGL 87 (200)
T ss_pred ccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHH
Confidence 3689999999988863 33333444689999997763
No 224
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=57.96 E-value=21 Score=41.80 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=32.5
Q ss_pred cCcccEEEEEcCchh-----HHHHHhhhcCCCCcEEEEeCCC
Q 003509 753 HERVDFVACLGGDGV-----ILHASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 753 ~~~vDLVIvLGGDGT-----ILrAArlf~~s~~PILGINlGr 789 (814)
...+|-|++=||=|. .+.|++..+...+|.|||-+|-
T Consensus 361 l~~adGilvPGGFG~RGveG~i~Aak~ARen~iP~LGiCLGm 402 (585)
T KOG2387|consen 361 LKSADGILVPGGFGDRGVEGKILAAKWARENKIPFLGICLGM 402 (585)
T ss_pred hccCCeEEeCCcccccchhHHHHHHHHHHhcCCCeEeeehhh
Confidence 467999999999875 6888999999999999999983
No 225
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=57.73 E-value=34 Score=33.39 Aligned_cols=100 Identities=17% Similarity=0.109 Sum_probs=53.9
Q ss_pred EEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchh---
Q 003509 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGV--- 767 (814)
Q Consensus 692 kVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGT--- 767 (814)
+|+|+.-++-+..+.+ ...+.|.+ .|+++.+-......+....+. .+. .+...++. ....|.+++.||.|.
T Consensus 1 ~v~il~~~g~~~~e~~-~~~~~l~~-ag~~v~~vs~~~~~v~~~~g~-~i~--~~~~~~~~~~~~~D~vvv~Gg~~~~~~ 75 (166)
T TIGR01382 1 KLLVLTTDEFEDSELL-YPLDRLRE-AGHEVDTVSKEAGTTVGKHGY-SVT--VDATIDEVNPEEYDALVIPGGRAPEYL 75 (166)
T ss_pred CEEEEecCCchHHHHH-HHHHHHHH-CCCEEEEEecCCCceeccCCc-eee--ccCChhhCCHHHCcEEEECCCCCHHHh
Confidence 4777776665444432 34455555 687775532211111101111 010 01122222 235899999999763
Q ss_pred -----HHHHHhhhcCCCCcEEEEeCCC-----cccCCCC
Q 003509 768 -----ILHASNLFRGAVPPVISFNLGS-----LGFLTSH 796 (814)
Q Consensus 768 -----ILrAArlf~~s~~PILGINlGr-----LGFLTe~ 796 (814)
++...+.+.....||.+|-.|. .|.|..-
T Consensus 76 ~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~aglL~g~ 114 (166)
T TIGR01382 76 RLNNKAVRLVREFVEKGKPVAAICHGPQLLISAGVLRGK 114 (166)
T ss_pred ccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhcCccCCC
Confidence 4444556666789999998875 4666543
No 226
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=57.71 E-value=15 Score=40.34 Aligned_cols=86 Identities=22% Similarity=0.234 Sum_probs=50.5
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchhH
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGTI 768 (814)
.++++||+...-.. ....++.+.|.+ . +++.+...... .|....+... .+.+ ..++|+||.||| |++
T Consensus 23 ~~~~liv~~~~~~~-~~~~~v~~~l~~-~-~~~~~~~~~~~----~p~~~~v~~~----~~~~~~~~~d~IIaiGG-Gs~ 90 (332)
T cd07766 23 FDRALVVSDEGVVK-GVGEKVADSLKK-L-IAVHIFDGVGP----NPTFEEVKEA----VERARAAEVDAVIAVGG-GST 90 (332)
T ss_pred CCeEEEEeCCchhh-hHHHHHHHHHHh-c-CcEEEeCCcCC----CcCHHHHHHH----HHHHHhcCcCEEEEeCC-chH
Confidence 47899998544322 556678888875 3 44433211110 0111111100 0111 247999999998 899
Q ss_pred HHHHhhhcC-C--CCcEEEEeC
Q 003509 769 LHASNLFRG-A--VPPVISFNL 787 (814)
Q Consensus 769 LrAArlf~~-s--~~PILGINl 787 (814)
+-+++.++. . .+|++.|.+
T Consensus 91 ~D~aK~ia~~~~~~~p~i~iPT 112 (332)
T cd07766 91 LDTAKAVAALLNRGLPIIIVPT 112 (332)
T ss_pred HHHHHHHHHHhcCCCCEEEEeC
Confidence 999988753 3 899999974
No 227
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=57.25 E-value=22 Score=40.13 Aligned_cols=76 Identities=17% Similarity=0.201 Sum_probs=43.5
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCccc-ccCcccEEEEEcCchhH
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~-l~~~vDLVIvLGGDGTI 768 (814)
.++++||+...-.....+.++.+.|.+ .|+++.+...+.. .|....+... .+. ...++|+||.||| |+.
T Consensus 26 ~~~~lvvt~~~~~~~g~~~~v~~~L~~-~g~~~~~~~~v~~----~p~~~~v~~~----~~~~~~~~~d~IIaiGG-GS~ 95 (374)
T cd08189 26 VKKVLIVTDKGLVKLGLLDKVLEALEG-AGIEYAVYDGVPP----DPTIENVEAG----LALYRENGCDAILAVGG-GSV 95 (374)
T ss_pred CCeEEEEeCcchhhcccHHHHHHHHHh-cCCeEEEeCCCCC----CcCHHHHHHH----HHHHHhcCCCEEEEeCC-ccH
Confidence 479999986543223356778888876 6887765332211 1111001000 000 1247899999999 777
Q ss_pred HHHHhhh
Q 003509 769 LHASNLF 775 (814)
Q Consensus 769 LrAArlf 775 (814)
+-+++.+
T Consensus 96 ~D~aK~i 102 (374)
T cd08189 96 IDCAKAI 102 (374)
T ss_pred HHHHHHH
Confidence 7777754
No 228
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=56.17 E-value=11 Score=37.65 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=29.5
Q ss_pred cCcccEEEEEcCc------hhHHHHHhhhcCCCCcEEEEeCCC
Q 003509 753 HERVDFVACLGGD------GVILHASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 753 ~~~vDLVIvLGGD------GTILrAArlf~~s~~PILGINlGr 789 (814)
..+.|.||+.||= +..+...+.+....+|||||-+|+
T Consensus 40 ~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC~G~ 82 (192)
T PF00117_consen 40 LDDYDGIIISGGPGSPYDIEGLIELIREARERKIPILGICLGH 82 (192)
T ss_dssp TTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEETHHH
T ss_pred hcCCCEEEECCcCCccccccccccccccccccceEEEEEeehh
Confidence 4688999999993 555666777777899999998874
No 229
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=55.74 E-value=35 Score=38.71 Aligned_cols=88 Identities=16% Similarity=0.089 Sum_probs=51.8
Q ss_pred CEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHHH
Q 003509 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (814)
Q Consensus 691 kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTILr 770 (814)
++++||+...-.......++.+.|.+ .|+++.+...+.. .+....+... ... ....++|+||.||| |+++-
T Consensus 23 ~~~livt~~~~~~~~~~~~v~~~L~~-~~~~~~~f~~v~~----~~~~~~v~~~--~~~-~~~~~~D~IIaiGG-GS~iD 93 (386)
T cd08191 23 SRALIVTDERMAGTPVFAELVQALAA-AGVEVEVFDGVLP----DLPRSELCDA--ASA-AARAGPDVIIGLGG-GSCID 93 (386)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHH-cCCeEEEECCCCC----CcCHHHHHHH--HHH-HHhcCCCEEEEeCC-chHHH
Confidence 78999985443223566778888876 6887754332210 0000000000 000 01258999999999 78888
Q ss_pred HHhhhcC-------------------CCCcEEEEeC
Q 003509 771 ASNLFRG-------------------AVPPVISFNL 787 (814)
Q Consensus 771 AArlf~~-------------------s~~PILGINl 787 (814)
+++.++- ..+|++.|.+
T Consensus 94 ~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPT 129 (386)
T cd08191 94 LAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPT 129 (386)
T ss_pred HHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeC
Confidence 8887642 1589999974
No 230
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=55.30 E-value=10 Score=46.97 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=31.1
Q ss_pred CcccEEEEEcCchhHHHHHhhhc----------------------CCCCcEEEEeC-------C---CcccCCCC
Q 003509 754 ERVDFVACLGGDGVILHASNLFR----------------------GAVPPVISFNL-------G---SLGFLTSH 796 (814)
Q Consensus 754 ~~vDLVIvLGGDGTILrAArlf~----------------------~s~~PILGINl-------G---rLGFLTe~ 796 (814)
.++|.+|+||||||+=.|..+.. ...+||+||-. | ++||-|.+
T Consensus 93 ~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~gTd~TiGfdTA~ 167 (745)
T TIGR02478 93 RGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTDMTIGADSAL 167 (745)
T ss_pred hCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCCCcCCCCHHHHH
Confidence 47999999999999877654321 24899999932 3 47776653
No 231
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=53.99 E-value=21 Score=40.06 Aligned_cols=74 Identities=23% Similarity=0.255 Sum_probs=41.6
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchhH
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGTI 768 (814)
.++++||+...-. ....+.+.|.+ .|+++.+...+.. .|....+... .+.. ..++|+||.||| |+.
T Consensus 23 ~~~~livtd~~~~---~~~~~~~~l~~-~~~~~~~~~~~~~----~p~~~~v~~~----~~~~~~~~~D~IIavGG-Gs~ 89 (367)
T cd08182 23 GKRVLLVTGPRSA---IASGLTDILKP-LGTLVVVFDDVQP----NPDLEDLAAG----IRLLREFGPDAVLAVGG-GSV 89 (367)
T ss_pred CCeEEEEeCchHH---HHHHHHHHHHH-cCCeEEEEcCcCC----CcCHHHHHHH----HHHHHhcCcCEEEEeCC-cHH
Confidence 4789999755432 44567777776 6776654322211 1111111000 0011 247899999998 788
Q ss_pred HHHHhhhc
Q 003509 769 LHASNLFR 776 (814)
Q Consensus 769 LrAArlf~ 776 (814)
+-+++.++
T Consensus 90 ~D~aK~ia 97 (367)
T cd08182 90 LDTAKALA 97 (367)
T ss_pred HHHHHHHH
Confidence 88887654
No 232
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=53.21 E-value=38 Score=30.12 Aligned_cols=15 Identities=13% Similarity=0.308 Sum_probs=12.3
Q ss_pred CCCcEEEeCccCCChH
Q 003509 346 SKKPLYLHSKEGVWRT 361 (814)
Q Consensus 346 ~~~PVLVHCtAGKDRT 361 (814)
.+.||+++|..|. |.
T Consensus 49 ~~~~ivl~c~~G~-~~ 63 (92)
T cd01532 49 RDTPIVVYGEGGG-ED 63 (92)
T ss_pred CCCeEEEEeCCCC-ch
Confidence 4679999999998 53
No 233
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=52.55 E-value=49 Score=36.80 Aligned_cols=97 Identities=9% Similarity=0.044 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcCCCeEEEEcc--ch-hhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHHHHHhhhcCCCCcE
Q 003509 706 EAKEVASFLYHQEKMNILVEP--DV-HDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPV 782 (814)
Q Consensus 706 ~a~eLi~~L~e~~Gi~V~ve~--~~-a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTILrAArlf~~s~~PI 782 (814)
..+.+++.|.+ .++.+++-. .. ...+...+. .+....-.+..++...+|++|+=||-||++.|+. .++|+
T Consensus 242 ~~~~~~~al~~-~~~~~i~~~g~~~~~~~~~~~~~--~v~~~~~~p~~~ll~~~~~~I~hgG~~t~~Eal~----~G~P~ 314 (392)
T TIGR01426 242 FYRTCVEAFRD-LDWHVVLSVGRGVDPADLGELPP--NVEVRQWVPQLEILKKADAFITHGGMNSTMEALF----NGVPM 314 (392)
T ss_pred HHHHHHHHHhc-CCCeEEEEECCCCChhHhccCCC--CeEEeCCCCHHHHHhhCCEEEECCCchHHHHHHH----hCCCE
Confidence 56667777766 566665521 11 112222221 1111100223355678999999999999998876 37888
Q ss_pred EEEeC----------------CCcccCCCCCcccHHHHHhhhh
Q 003509 783 ISFNL----------------GSLGFLTSHPVSSYLNSLCFLS 809 (814)
Q Consensus 783 LGINl----------------GrLGFLTe~~~dei~eaLe~L~ 809 (814)
+.+.. |..---.+++.+++.++|++++
T Consensus 315 v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l 357 (392)
T TIGR01426 315 VAVPQGADQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVL 357 (392)
T ss_pred EecCCcccHHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHh
Confidence 88743 2111123556677877777765
No 234
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=51.91 E-value=15 Score=41.74 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=47.7
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchh-
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGV- 767 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGT- 767 (814)
.++|+|+=---+ ..++++|.+ .|..+.+-+... +.+++ ..++|-||.-||.|.
T Consensus 177 ~~~I~viD~G~k------~nivr~L~~-~G~~v~vvp~~~------------------~~~~i~~~~~DGIvLSgGPgdp 231 (360)
T PRK12564 177 KYKVVAIDFGVK------RNILRELAE-RGCRVTVVPATT------------------TAEEILALNPDGVFLSNGPGDP 231 (360)
T ss_pred CCEEEEEeCCcH------HHHHHHHHH-CCCEEEEEeCCC------------------CHHHHHhcCCCEEEEeCCCCCh
Confidence 357877754322 358888887 788887643211 11111 125898988899765
Q ss_pred -----HHHHHhhhcCCCCcEEEEeCCC
Q 003509 768 -----ILHASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 768 -----ILrAArlf~~s~~PILGINlGr 789 (814)
.+..++.+...++||+||-+|+
T Consensus 232 ~~~~~~~~~i~~~~~~~~PilGIClG~ 258 (360)
T PRK12564 232 AALDYAIEMIRELLEKKIPIFGICLGH 258 (360)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECHHH
Confidence 3445555555689999999874
No 235
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=51.88 E-value=28 Score=35.62 Aligned_cols=35 Identities=26% Similarity=0.243 Sum_probs=22.5
Q ss_pred CcccEEEEEcCchh------------HHHHHhhhcCCCCcEEEEeCCC
Q 003509 754 ERVDFVACLGGDGV------------ILHASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 754 ~~vDLVIvLGGDGT------------ILrAArlf~~s~~PILGINlGr 789 (814)
.++|.||. +|=|+ +....+.+...+.|||||-.|.
T Consensus 36 ~~~d~lil-pG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~ 82 (199)
T PRK13181 36 AGADKVIL-PGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGM 82 (199)
T ss_pred ccCCEEEE-CCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhH
Confidence 35899885 55333 2333444445789999998873
No 236
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=51.67 E-value=14 Score=48.21 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=27.3
Q ss_pred CcccEEEEEcCchhHHHHHhhhc-----CCCCcEEEEe
Q 003509 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFN 786 (814)
Q Consensus 754 ~~vDLVIvLGGDGTILrAArlf~-----~s~~PILGIN 786 (814)
-++|.+|+||||||+=.|+.+.. +..++|+||-
T Consensus 195 l~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIP 232 (1328)
T PTZ00468 195 LKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCP 232 (1328)
T ss_pred hCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEe
Confidence 37999999999999988877654 3569999994
No 237
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=50.59 E-value=38 Score=36.90 Aligned_cols=83 Identities=22% Similarity=0.233 Sum_probs=49.9
Q ss_pred CEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcC----c-
Q 003509 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGG----D- 765 (814)
Q Consensus 691 kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGG----D- 765 (814)
++|+|+.-++.+.-. ++...|++ .|+.+.+-.. .+ . .+.....+++|.+|..|| |
T Consensus 4 ~kvaVl~~pG~n~d~---e~~~Al~~-aG~~v~~v~~-~~-~--------------~~~~~~l~~~DgLvipGGfs~gD~ 63 (261)
T PRK01175 4 IRVAVLRMEGTNCED---ETVKAFRR-LGVEPEYVHI-ND-L--------------AAERKSVSDYDCLVIPGGFSAGDY 63 (261)
T ss_pred CEEEEEeCCCCCCHH---HHHHHHHH-CCCcEEEEee-cc-c--------------cccccchhhCCEEEECCCCCcccc
Confidence 489999998863222 33455555 5777654221 00 0 001111357999999999 2
Q ss_pred ---hh---------HHHHHhhhcCCCCcEEEEeCCC-----cccC
Q 003509 766 ---GV---------ILHASNLFRGAVPPVISFNLGS-----LGFL 793 (814)
Q Consensus 766 ---GT---------ILrAArlf~~s~~PILGINlGr-----LGFL 793 (814)
|. +..+.+.|...+.||+||-.|- +|.|
T Consensus 64 l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~GlL 108 (261)
T PRK01175 64 IRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVELGLL 108 (261)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHCCCC
Confidence 11 1255566777899999998764 6766
No 238
>PF05925 IpgD: Enterobacterial virulence protein IpgD; InterPro: IPR008108 Some Gram-negative animal enteropathogens express a specialised secretion system to directly "inject" exotoxins into the cytoplasm of host cells. Dubbed the type III secretion system, it is of specific interest to researchers, as the components of such a system are only expressed in pathogenic strains []. The system is composed of structural proteins and exotoxin effectors; these are often encoded on large virulence plasmids or on the bacterial chromosome itself []. The Shigella flexneri invasion plasmid antigen (ipa) genes are found on such a plasmid, and are arranged into an operon. Directly upstream of this operon is another cluster of type III genes, termed ipgD, E and F []. Deletion mutational studies of all three genes showed they were essential for virulence in S. flexneri, and that IpgD is secreted by the type III needle to the outside of the bacterial cell []. Further analysis of the ipg operon confirmed that the IpgD gene product is chaperoned by the IpgE protein while in the bacterial cytoplasm []. More recently, a large study into the spread of the ipa/mxi/ipg pathogenicity islands through their relevant plasmid has revealed that homologues exist in many different Shigella strains, as well as enteroinvasive Escherichia coli and Salmonella spp []. There is evidence that the genes were acquired from Shigella through lateral transfer, like most of the other type III secretion system virulence plasmids.; GO: 0016791 phosphatase activity, 0009405 pathogenesis; PDB: 4DID_B.
Probab=50.20 E-value=5.3 Score=47.19 Aligned_cols=24 Identities=17% Similarity=-0.024 Sum_probs=0.0
Q ss_pred CCCCcEEEeCccCCChHHHHHHHH
Q 003509 345 SSKKPLYLHSKEGVWRTYAMVSRW 368 (814)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGal~aLL 368 (814)
..+....+.|.+||||||++-+-+
T Consensus 451 eiGavp~~NCKSGKDRTG~lD~ei 474 (559)
T PF05925_consen 451 EIGAVPCWNCKSGKDRTGMLDAEI 474 (559)
T ss_dssp ------------------------
T ss_pred hhCCeeeccCccCCccccccHHHH
Confidence 344567789999999999765433
No 239
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=50.08 E-value=19 Score=34.75 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=29.9
Q ss_pred CEEEEEecCCc-hHHHHHHHHHHHHhcCC-CeEEEEcc
Q 003509 691 RTVLVLKKPGP-ALMEEAKEVASFLYHQE-KMNILVEP 726 (814)
Q Consensus 691 kkVlIV~K~~~-ea~~~a~eLi~~L~e~~-Gi~V~ve~ 726 (814)
++|.|++-++. +-.+.+..++++|.+ . |++|.++.
T Consensus 1 ~kVfI~Ys~d~~~h~~~V~~la~~L~~-~~g~~V~lD~ 37 (150)
T PF08357_consen 1 RKVFISYSHDSEEHKEWVLALAEFLRQ-NCGIDVILDQ 37 (150)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHh-ccCCceeecH
Confidence 58999999987 566889999999998 6 99999865
No 240
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=50.03 E-value=25 Score=35.81 Aligned_cols=68 Identities=16% Similarity=0.089 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCch-------------------
Q 003509 706 EAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG------------------- 766 (814)
Q Consensus 706 ~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDG------------------- 766 (814)
....++++|+. .|..+.+-+..... .+.......+|.||.-||-+
T Consensus 20 ~~~~~~~~l~~-~G~~~~iv~~~~~~---------------~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~ 83 (189)
T cd01745 20 LNQYYVDAVRK-AGGLPVLLPPVDDE---------------EDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDP 83 (189)
T ss_pred HHHHHHHHHHH-CCCEEEEeCCCCCh---------------HHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCCh
Confidence 45678888887 68776553321100 00111235689999999943
Q ss_pred ----hHHHHHhhhcCCCCcEEEEeCCC
Q 003509 767 ----VILHASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 767 ----TILrAArlf~~s~~PILGINlGr 789 (814)
......+.+...++||+||-+|.
T Consensus 84 ~r~~~~~~~~~~~~~~~~PilgiC~G~ 110 (189)
T cd01745 84 ERDAFELALLRAALERGKPILGICRGM 110 (189)
T ss_pred hHHHHHHHHHHHHHHCCCCEEEEcchH
Confidence 22455555556689999999984
No 241
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=50.02 E-value=32 Score=38.35 Aligned_cols=42 Identities=24% Similarity=0.140 Sum_probs=26.4
Q ss_pred hhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEE
Q 003509 278 EGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIK 321 (814)
Q Consensus 278 eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVh 321 (814)
.+++.++++|.+||||..+.. ....+...+...+.-|++.|-
T Consensus 42 ~El~~~k~~Gg~tiVd~T~~g--~GRd~~~l~~is~~tGv~II~ 83 (308)
T PF02126_consen 42 AELKEFKAAGGRTIVDATPIG--LGRDVEALREISRRTGVNIIA 83 (308)
T ss_dssp HHHHHHHHTTEEEEEE--SGG--GTB-HHHHHHHHHHHT-EEEE
T ss_pred HHHHHHHHcCCCEEEecCCcc--cCcCHHHHHHHHHHhCCeEEE
Confidence 457788899999999998875 222333445566777887654
No 242
>PRK10586 putative oxidoreductase; Provisional
Probab=49.96 E-value=44 Score=37.86 Aligned_cols=82 Identities=9% Similarity=0.079 Sum_probs=48.6
Q ss_pred CEEEEEecCCchHHHH-HHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHH
Q 003509 691 RTVLVLKKPGPALMEE-AKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (814)
Q Consensus 691 kkVlIV~K~~~ea~~~-a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTIL 769 (814)
++++||+-... .+. ...+.+.|.+ .|+.+........ ...+... ......++|+||.+|| |+.+
T Consensus 35 ~~~lvv~g~~~--~~~~~~~~~~~l~~-~~~~~~~~~g~~~-------~~~v~~l----~~~~~~~~d~iiavGG-Gs~i 99 (362)
T PRK10586 35 SRAVWIYGERA--IAAAQPYLPPAFEL-PGAKHILFRGHCS-------ESDVAQL----AAASGDDRQVVIGVGG-GALL 99 (362)
T ss_pred CeEEEEEChHH--HHHHHHHHHHHHHH-cCCeEEEeCCCCC-------HHHHHHH----HHHhccCCCEEEEecC-cHHH
Confidence 67888876553 222 2345566766 6776643221111 0000000 0011246899999998 8999
Q ss_pred HHHhhhcC-CCCcEEEEeC
Q 003509 770 HASNLFRG-AVPPVISFNL 787 (814)
Q Consensus 770 rAArlf~~-s~~PILGINl 787 (814)
-+++.++. ..+|++.|.+
T Consensus 100 D~aK~~a~~~~~p~i~vPT 118 (362)
T PRK10586 100 DTAKALARRLGLPFVAIPT 118 (362)
T ss_pred HHHHHHHhhcCCCEEEEeC
Confidence 99998764 5899999985
No 243
>PLN02327 CTP synthase
Probab=49.93 E-value=38 Score=40.78 Aligned_cols=35 Identities=29% Similarity=0.333 Sum_probs=28.0
Q ss_pred cCcccEEEEEcCc------hhHHHHHhhhcCCCCcEEEEeCC
Q 003509 753 HERVDFVACLGGD------GVILHASNLFRGAVPPVISFNLG 788 (814)
Q Consensus 753 ~~~vDLVIvLGGD------GTILrAArlf~~s~~PILGINlG 788 (814)
...+|-||+-||= |-+ .+++.....++|+|||-+|
T Consensus 360 L~~~DGIvvpGGfG~~~~~G~i-~ai~~are~~iP~LGIClG 400 (557)
T PLN02327 360 LKGADGILVPGGFGDRGVEGKI-LAAKYARENKVPYLGICLG 400 (557)
T ss_pred hccCCEEEeCCCCCCcccccHH-HHHHHHHHcCCCEEEEcHH
Confidence 4678999999983 554 4677777789999999887
No 244
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=49.81 E-value=1.1e+02 Score=28.24 Aligned_cols=89 Identities=11% Similarity=0.151 Sum_probs=56.5
Q ss_pred CEEEEEecCCch-HHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHH
Q 003509 691 RTVLVLKKPGPA-LMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (814)
Q Consensus 691 kkVlIV~K~~~e-a~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTIL 769 (814)
++|+++-..+-. ..=.+.++.+.|.+ +|+++-++..-...+ +...+++|+||+-.
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~-~gi~~~v~~~~~~e~-----------------~~~~~~~D~iv~t~------ 58 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQS-HNIPVELIQCRVNEI-----------------ETYMDGVHLICTTA------ 58 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHH-CCCeEEEEEecHHHH-----------------hhhcCCCCEEEECC------
Confidence 379999988874 34446788899987 799876654211111 11124679887533
Q ss_pred HHHhhhcCCCCcEEEEeCCCcccCCCCCcccHHHHHhhhh
Q 003509 770 HASNLFRGAVPPVISFNLGSLGFLTSHPVSSYLNSLCFLS 809 (814)
Q Consensus 770 rAArlf~~s~~PILGINlGrLGFLTe~~~dei~eaLe~L~ 809 (814)
.....+ .++|++-+ ++||+.++.+++++.|.+++
T Consensus 59 ~~~~~~--~~ip~~~~----~~llt~~~~~~~~e~i~~~l 92 (94)
T PRK10310 59 RVDRSF--GDIPLVHG----MPFVSGVGIEALQNKILTIL 92 (94)
T ss_pred cccccc--CCCCEEEE----eecccccCHHHHHHHHHHHH
Confidence 111111 15786433 47999999999999887765
No 245
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=49.28 E-value=15 Score=45.61 Aligned_cols=37 Identities=14% Similarity=0.124 Sum_probs=25.4
Q ss_pred cCCEEEEEecCCc-hHH-HHHHHHHHHHhcCCCeEEEEcc
Q 003509 689 TPRTVLVLKKPGP-ALM-EEAKEVASFLYHQEKMNILVEP 726 (814)
Q Consensus 689 ~~kkVlIV~K~~~-ea~-~~a~eLi~~L~e~~Gi~V~ve~ 726 (814)
+.|+|+|++--++ .-+ ..++.++..... .|++|+--.
T Consensus 2 ~~k~IaIltSGGdapGmNaaIravvr~a~~-~g~~V~gi~ 40 (762)
T cd00764 2 AGKAIAVLTSGGDAQGMNAAVRAVVRMGIY-VGAKVFFVY 40 (762)
T ss_pred CCcEEEEEccCCCchhHhHHHHHHHHHHHH-CCCEEEEEe
Confidence 4579999999887 433 345667766655 688887543
No 246
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=49.19 E-value=31 Score=39.25 Aligned_cols=73 Identities=16% Similarity=0.176 Sum_probs=46.8
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchhH
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGTI 768 (814)
-++|+++=-- ....++++|.+ .|+.+.+-+... +.+++ ..++|.||.-||-|..
T Consensus 167 ~~~V~viD~G------~k~ni~~~L~~-~G~~v~vvp~~~------------------~~~~i~~~~~DGIiLsgGPgdp 221 (354)
T PRK12838 167 GKHVALIDFG------YKKSILRSLSK-RGCKVTVLPYDT------------------SLEEIKNLNPDGIVLSNGPGDP 221 (354)
T ss_pred CCEEEEECCC------HHHHHHHHHHH-CCCeEEEEECCC------------------CHHHHhhcCCCEEEEcCCCCCh
Confidence 4577776542 23668888887 788887643211 11111 2368999999999863
Q ss_pred ------HHHHhhhcCCCCcEEEEeCC
Q 003509 769 ------LHASNLFRGAVPPVISFNLG 788 (814)
Q Consensus 769 ------LrAArlf~~s~~PILGINlG 788 (814)
+..++.+... +|||||-+|
T Consensus 222 ~~~~~~~~~i~~~~~~-~PvlGIClG 246 (354)
T PRK12838 222 KELQPYLPEIKKLISS-YPILGICLG 246 (354)
T ss_pred HHhHHHHHHHHHHhcC-CCEEEECHH
Confidence 4444544444 999999987
No 247
>PTZ00287 6-phosphofructokinase; Provisional
Probab=48.92 E-value=15 Score=48.28 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=26.5
Q ss_pred cccEEEEEcCchhHHHHHhhhc---CCCCc--EEEEe
Q 003509 755 RVDFVACLGGDGVILHASNLFR---GAVPP--VISFN 786 (814)
Q Consensus 755 ~vDLVIvLGGDGTILrAArlf~---~s~~P--ILGIN 786 (814)
+.|.+|+||||||+=.|+.+.. ..++| |+||-
T Consensus 928 ~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVP 964 (1419)
T PTZ00287 928 QLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIP 964 (1419)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeC
Confidence 7999999999999988887654 24666 99994
No 248
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=48.77 E-value=44 Score=36.54 Aligned_cols=47 Identities=21% Similarity=0.262 Sum_probs=35.8
Q ss_pred cCcccEEEEEcCchh-------HHHHHhhhcCCCCcEEEEeCC-----CcccCCCCCcc
Q 003509 753 HERVDFVACLGGDGV-------ILHASNLFRGAVPPVISFNLG-----SLGFLTSHPVS 799 (814)
Q Consensus 753 ~~~vDLVIvLGGDGT-------ILrAArlf~~s~~PILGINlG-----rLGFLTe~~~d 799 (814)
.+++|++|+-||+|. ++.-.+.+.....+|.+|-.| ..|.|.....-
T Consensus 73 ~~~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~T 131 (322)
T PRK09393 73 LDRADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLAAAGLLDGRRAT 131 (322)
T ss_pred cCCCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhccCCCCCeee
Confidence 357899999999774 666677777788999999887 57888755433
No 249
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=48.73 E-value=40 Score=37.59 Aligned_cols=24 Identities=17% Similarity=0.074 Sum_probs=17.4
Q ss_pred cEEEeCc-cCCChHHHHHHHHHHhCCC
Q 003509 349 PLYLHSK-EGVWRTYAMVSRWRQYMAR 374 (814)
Q Consensus 349 PVLVHCt-AGKDRTGal~aLLl~l~GV 374 (814)
.|+++|. .|. |++.++.++.. +|.
T Consensus 76 ~vvvyC~~gG~-RS~~aa~~L~~-~G~ 100 (311)
T TIGR03167 76 QPLLYCWRGGM-RSGSLAWLLAQ-IGF 100 (311)
T ss_pred cEEEEECCCCh-HHHHHHHHHHH-cCC
Confidence 4999995 566 99977766654 565
No 250
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=48.60 E-value=33 Score=38.11 Aligned_cols=82 Identities=24% Similarity=0.344 Sum_probs=49.7
Q ss_pred CEEEEEecCCchHHHHHHHHHHHHhcCCC-eEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchhH
Q 003509 691 RTVLVLKKPGPALMEEAKEVASFLYHQEK-MNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (814)
Q Consensus 691 kkVlIV~K~~~ea~~~a~eLi~~L~e~~G-i~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGTI 768 (814)
++++||+...-.. ....++.+.|.+ .| +.+++.++ +....+... .+.+ ..++|+||.||| |++
T Consensus 26 ~~~liv~d~~~~~-~~~~~v~~~l~~-~~~~~~~~~~~--------~~~~~v~~~----~~~~~~~~~d~iIaiGG-Gs~ 90 (339)
T cd08173 26 GRVLVVTGPTTKS-IAGKKVEALLED-EGEVDVVIVED--------ATYEEVEKV----ESSARDIGADFVIGVGG-GRV 90 (339)
T ss_pred CeEEEEECCchHH-HHHHHHHHHHHh-cCCeEEEEeCC--------CCHHHHHHH----HHHhhhcCCCEEEEeCC-chH
Confidence 6899998554322 456678888876 45 22332221 110001000 0011 237899999998 899
Q ss_pred HHHHhhhcC-CCCcEEEEeC
Q 003509 769 LHASNLFRG-AVPPVISFNL 787 (814)
Q Consensus 769 LrAArlf~~-s~~PILGINl 787 (814)
+-+++.++. ..+|++-|.+
T Consensus 91 ~D~aK~~a~~~~~p~i~iPT 110 (339)
T cd08173 91 IDVAKVAAYKLGIPFISVPT 110 (339)
T ss_pred HHHHHHHHHhcCCCEEEecC
Confidence 999998763 5789999974
No 251
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=48.42 E-value=27 Score=38.90 Aligned_cols=84 Identities=14% Similarity=0.171 Sum_probs=51.2
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCccc-ccCcccEEEEEcCchhH
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~-l~~~vDLVIvLGGDGTI 768 (814)
-++++||+...-. .....++.+.|.+ .++.+.+.... |....+... .+. ...++|+||.||| |++
T Consensus 23 ~~~~liv~d~~~~-~~~~~~l~~~L~~-~~~~~~~~~~~-------p~~~~v~~~----~~~~~~~~~D~iIavGG-Gs~ 88 (347)
T cd08172 23 GKRPLIVTGPRSW-AAAKPYLPESLAA-GEAFVLRYDGE-------CSEENIERL----AAQAKENGADVIIGIGG-GKV 88 (347)
T ss_pred CCeEEEEECHHHH-HHHHHHHHHHHhc-CeEEEEEeCCC-------CCHHHHHHH----HHHHHhcCCCEEEEeCC-cHH
Confidence 3788888876541 1345667777754 46655433221 111011000 011 1247899999999 899
Q ss_pred HHHHhhhcC-CCCcEEEEeC
Q 003509 769 LHASNLFRG-AVPPVISFNL 787 (814)
Q Consensus 769 LrAArlf~~-s~~PILGINl 787 (814)
+-+++.++. ..+|++.|.+
T Consensus 89 ~D~aK~ia~~~~~p~i~VPT 108 (347)
T cd08172 89 LDTAKAVADRLGVPVITVPT 108 (347)
T ss_pred HHHHHHHHHHhCCCEEEecC
Confidence 999998864 4789999975
No 252
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=47.91 E-value=40 Score=32.01 Aligned_cols=88 Identities=8% Similarity=0.057 Sum_probs=52.5
Q ss_pred CEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHHH
Q 003509 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (814)
Q Consensus 691 kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTILr 770 (814)
|+|+|++-..+. ......+.++|.+ +|.+|+.-..-.+.+. + ...| .+..+.+..+|++++.-.-.+++.
T Consensus 1 ksiAVvGaS~~~-~~~g~~v~~~l~~-~G~~v~~Vnp~~~~i~---G---~~~y--~sl~e~p~~iDlavv~~~~~~~~~ 70 (116)
T PF13380_consen 1 KSIAVVGASDNP-GKFGYRVLRNLKA-AGYEVYPVNPKGGEIL---G---IKCY--PSLAEIPEPIDLAVVCVPPDKVPE 70 (116)
T ss_dssp -EEEEET--SST-TSHHHHHHHHHHH-TT-EEEEESTTCSEET---T---EE-B--SSGGGCSST-SEEEE-S-HHHHHH
T ss_pred CEEEEEcccCCC-CChHHHHHHHHHh-CCCEEEEECCCceEEC---c---EEee--ccccCCCCCCCEEEEEcCHHHHHH
Confidence 689999866651 1135667888887 7888875332222111 1 1112 234445689999999999999999
Q ss_pred HHhhhcCCCCcEEEEeCC
Q 003509 771 ASNLFRGAVPPVISFNLG 788 (814)
Q Consensus 771 AArlf~~s~~PILGINlG 788 (814)
..+.+...++.-+=|..|
T Consensus 71 ~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 71 IVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp HHHHHHHHT-SEEEE-TT
T ss_pred HHHHHHHcCCCEEEEEcc
Confidence 999988878888888888
No 253
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=47.17 E-value=1.1e+02 Score=31.95 Aligned_cols=80 Identities=18% Similarity=0.188 Sum_probs=50.0
Q ss_pred hhHHHHHHcCCcEEEEcCCCcc--cCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCC-CcEEEeC
Q 003509 278 EGLKWLMEKGYKTIVDIRAERV--KDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSK-KPLYLHS 354 (814)
Q Consensus 278 eDla~L~~lGIKTVIDLRsee~--E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d~~~-~PVLVHC 354 (814)
+-++.+++.|++..+++-.... ....+.......+...|+..+.++=. ....+++++.+++..+.+..+ .|+-+||
T Consensus 119 ~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt-~G~~~P~~v~~li~~l~~~~~~~~~~~H~ 197 (265)
T cd03174 119 EAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDT-VGLATPEEVAELVKALREALPDVPLGLHT 197 (265)
T ss_pred HHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechh-cCCcCHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 3466778899999999943320 11111112233456788988887744 335678888888887764433 6777777
Q ss_pred ccCC
Q 003509 355 KEGV 358 (814)
Q Consensus 355 tAGK 358 (814)
.--.
T Consensus 198 Hn~~ 201 (265)
T cd03174 198 HNTL 201 (265)
T ss_pred CCCC
Confidence 6544
No 254
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=46.78 E-value=20 Score=40.82 Aligned_cols=73 Identities=16% Similarity=0.195 Sum_probs=46.3
Q ss_pred CEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCccccc-CcccEEEEEcCchhH-
Q 003509 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLH-ERVDFVACLGGDGVI- 768 (814)
Q Consensus 691 kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~-~~vDLVIvLGGDGTI- 768 (814)
++|+|+=---+ ..++++|.+ .|+.+.+-+... +.+++. ...|-||.-||-|..
T Consensus 174 ~~i~viD~G~k------~ni~~~L~~-~G~~v~vvp~~~------------------~~~~i~~~~pDGIiLSgGPgdp~ 228 (358)
T TIGR01368 174 KRVVVIDFGVK------QNILRRLVK-RGCEVTVVPYDT------------------DAEEIKKYNPDGIFLSNGPGDPA 228 (358)
T ss_pred cEEEEEeCCcH------HHHHHHHHH-CCCEEEEEcCCC------------------CHHHHHhhCCCEEEECCCCCCHH
Confidence 36777743222 358888887 798887644211 111221 245999999996553
Q ss_pred -----HHHHhhhcCCCCcEEEEeCCC
Q 003509 769 -----LHASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 769 -----LrAArlf~~s~~PILGINlGr 789 (814)
+..++.+.. .+|||||-+|+
T Consensus 229 ~~~~~i~~i~~~~~-~~PILGIClG~ 253 (358)
T TIGR01368 229 AVEPAIETIRKLLE-KIPIFGICLGH 253 (358)
T ss_pred HHHHHHHHHHHHHc-CCCEEEECHHH
Confidence 445555555 89999999874
No 255
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=46.48 E-value=83 Score=31.41 Aligned_cols=42 Identities=26% Similarity=0.378 Sum_probs=31.4
Q ss_pred CcccEEEEEcCchh--------HHHHHhhhcCCCCcEEEEeCCC-----cccCCC
Q 003509 754 ERVDFVACLGGDGV--------ILHASNLFRGAVPPVISFNLGS-----LGFLTS 795 (814)
Q Consensus 754 ~~vDLVIvLGGDGT--------ILrAArlf~~s~~PILGINlGr-----LGFLTe 795 (814)
.+.|.+|+.||.|+ ++...+.+.....||.+|..|. .|.|..
T Consensus 75 ~~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~agll~g 129 (180)
T cd03169 75 DDYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAAGVLKG 129 (180)
T ss_pred hHCCEEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHcCccCC
Confidence 36799999999664 4555666667899999999885 465544
No 256
>PRK09875 putative hydrolase; Provisional
Probab=46.07 E-value=1e+02 Score=34.11 Aligned_cols=43 Identities=9% Similarity=0.200 Sum_probs=28.4
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEE
Q 003509 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELI 320 (814)
Q Consensus 276 T~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yV 320 (814)
..+++..++++|.+||||..+.. ....+...++..+..|+++|
T Consensus 36 ~~~el~~~~~~Gg~tiVd~T~~g--~GRd~~~l~~is~~tgv~Iv 78 (292)
T PRK09875 36 ICQEMNDLMTRGVRNVIEMTNRY--MGRNAQFMLDVMRETGINVV 78 (292)
T ss_pred HHHHHHHHHHhCCCeEEecCCCc--cCcCHHHHHHHHHHhCCcEE
Confidence 34567888899999999998775 22233334445566666654
No 257
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=45.88 E-value=44 Score=37.28 Aligned_cols=83 Identities=13% Similarity=0.106 Sum_probs=50.5
Q ss_pred CEEEEEecCCchHHHHHHHHHHHHhcCCCeEE--EEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchh
Q 003509 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNI--LVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGV 767 (814)
Q Consensus 691 kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V--~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGT 767 (814)
++++||+..... .....++.+.|.+ .|+.+ .+... .|....+... .+.. ..++|+||.||| |+
T Consensus 23 ~~~liv~~~~~~-~~~~~~v~~~l~~-~~i~~~~~~~~~-------~p~~~~v~~~----~~~~~~~~~d~IIavGG-Gs 88 (349)
T cd08550 23 SKVAVVGGKTVL-KKSRPRFEAALAK-SIIVVDVIVFGG-------ECSTEEVVKA----LCGAEEQEADVIIGVGG-GK 88 (349)
T ss_pred CeEEEEEChHHH-HHHHHHHHHHHHh-cCCeeEEEEcCC-------CCCHHHHHHH----HHHHHhcCCCEEEEecC-cH
Confidence 688888855431 1446788888876 57643 22110 0110000000 0011 247999999998 89
Q ss_pred HHHHHhhhcC-CCCcEEEEeC
Q 003509 768 ILHASNLFRG-AVPPVISFNL 787 (814)
Q Consensus 768 ILrAArlf~~-s~~PILGINl 787 (814)
++-+++.++. ..+|++.|.+
T Consensus 89 ~~D~aK~ia~~~~~p~i~VPT 109 (349)
T cd08550 89 TLDTAKAVADRLDKPIVIVPT 109 (349)
T ss_pred HHHHHHHHHHHcCCCEEEeCC
Confidence 9999998764 5889999975
No 258
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=45.82 E-value=84 Score=33.75 Aligned_cols=57 Identities=16% Similarity=0.138 Sum_probs=39.9
Q ss_pred cccccCcccEEEEEcCchhHHHHHhhhcCCCCcEEEEeC-----------------CCcccCCCC---CcccHHHHHhhh
Q 003509 749 TSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-----------------GSLGFLTSH---PVSSYLNSLCFL 808 (814)
Q Consensus 749 ~~~l~~~vDLVIvLGGDGTILrAArlf~~s~~PILGINl-----------------GrLGFLTe~---~~dei~eaLe~L 808 (814)
..++...+|++|+-+|-+|++-|.. .++||+.+.. +..|++.+. +++++.++|..+
T Consensus 246 ~~~~l~~ad~~v~~sg~~t~~Eam~----~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~l 321 (350)
T cd03785 246 MAAAYAAADLVISRAGASTVAELAA----LGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLEL 321 (350)
T ss_pred HHHHHHhcCEEEECCCHhHHHHHHH----hCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHH
Confidence 3445678999999888666666554 4789998643 235777764 578888888776
Q ss_pred h
Q 003509 809 S 809 (814)
Q Consensus 809 ~ 809 (814)
+
T Consensus 322 l 322 (350)
T cd03785 322 L 322 (350)
T ss_pred h
Confidence 4
No 259
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=45.78 E-value=33 Score=38.78 Aligned_cols=76 Identities=20% Similarity=0.241 Sum_probs=42.2
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchhH
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGTI 768 (814)
.++++||+...-.......++.+.|.+ .|+++.+...+.. .|....+.. -.+.. ..++|+||.||| |+.
T Consensus 28 ~~~~livt~~~~~~~~~~~~v~~~L~~-~~~~~~~~~~v~~----~p~~~~v~~----~~~~~~~~~~d~IIaiGG-Gsv 97 (377)
T cd08188 28 AKKVLLVSDPGVIKAGWVDRVIESLEE-AGLEYVVFSDVSP----NPRDEEVMA----GAELYLENGCDVIIAVGG-GSP 97 (377)
T ss_pred CCeEEEEeCcchhhCccHHHHHHHHHH-cCCeEEEeCCCCC----CCCHHHHHH----HHHHHHhcCCCEEEEeCC-chH
Confidence 479999986543222346678888876 6777654322111 111100000 00111 357999999999 777
Q ss_pred HHHHhhh
Q 003509 769 LHASNLF 775 (814)
Q Consensus 769 LrAArlf 775 (814)
+-+++.+
T Consensus 98 iD~AK~i 104 (377)
T cd08188 98 IDCAKGI 104 (377)
T ss_pred HHHHHHH
Confidence 7777543
No 260
>PRK15378 inositol phosphate phosphatase SopB; Provisional
Probab=45.62 E-value=13 Score=43.68 Aligned_cols=18 Identities=33% Similarity=0.117 Sum_probs=14.7
Q ss_pred EEeCccCCChHHHHHHHH
Q 003509 351 YLHSKEGVWRTYAMVSRW 368 (814)
Q Consensus 351 LVHCtAGKDRTGal~aLL 368 (814)
.+.|.+||||||+|=+-+
T Consensus 460 ~wNCkSGKDRTGmmD~ei 477 (564)
T PRK15378 460 AWNCKSGKDRTGMMDSEI 477 (564)
T ss_pred eeccCCCCccccchHHHH
Confidence 689999999999765444
No 261
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=45.58 E-value=86 Score=36.05 Aligned_cols=99 Identities=19% Similarity=0.218 Sum_probs=59.3
Q ss_pred hhcccccCCEEEEEecCCc-hHHHHHHHHHHHHhcCCCeEEEEccchhhH-hhcCCCCccceeeeccCcccccCcccEEE
Q 003509 683 MLMWKTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDI-FARIPGFGFVQTFYLQDTSDLHERVDFVA 760 (814)
Q Consensus 683 ~l~w~~~~kkVlIV~K~~~-ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~-l~~~p~~~~v~~~~~~~~~~l~~~vDLVI 760 (814)
...|...-+.+..++=... ...++.+.+.+-+.+ -+..|++..--.+. ....|....+..+ .+...+.+++|++|
T Consensus 229 ~~~~~~~d~~~vyvslGt~~~~~~l~~~~~~a~~~-l~~~vi~~~~~~~~~~~~~p~n~~v~~~--~p~~~~l~~ad~vI 305 (406)
T COG1819 229 LPYWIPADRPIVYVSLGTVGNAVELLAIVLEALAD-LDVRVIVSLGGARDTLVNVPDNVIVADY--VPQLELLPRADAVI 305 (406)
T ss_pred CcchhcCCCCeEEEEcCCcccHHHHHHHHHHHHhc-CCcEEEEeccccccccccCCCceEEecC--CCHHHHhhhcCEEE
Confidence 3445444455555544433 236677778888876 67777764422111 1112221111111 34445678999999
Q ss_pred EEcCchhHHHHHhhhcCCCCcEEEEeCC
Q 003509 761 CLGGDGVILHASNLFRGAVPPVISFNLG 788 (814)
Q Consensus 761 vLGGDGTILrAArlf~~s~~PILGINlG 788 (814)
+=||=||+..+.+ .++|++.|-.+
T Consensus 306 ~hGG~gtt~eaL~----~gvP~vv~P~~ 329 (406)
T COG1819 306 HHGGAGTTSEALY----AGVPLVVIPDG 329 (406)
T ss_pred ecCCcchHHHHHH----cCCCEEEecCC
Confidence 9999999999876 47899988553
No 262
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=44.51 E-value=27 Score=40.04 Aligned_cols=76 Identities=21% Similarity=0.219 Sum_probs=43.0
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCccc-ccCcccEEEEEcCchhH
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~-l~~~vDLVIvLGGDGTI 768 (814)
.++++||+-..-.....+.++.+.|.+ .|+++.+-..+.. .|....+... .+. ...++|+||.||| |++
T Consensus 23 ~~~vlivt~~~~~~~g~~~~v~~~L~~-~gi~~~~f~~v~~----~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GSv 92 (414)
T cd08190 23 ARRVCLVTDPNLAQLPPVKVVLDSLEA-AGINFEVYDDVRV----EPTDESFKDA----IAFAKKGQFDAFVAVGG-GSV 92 (414)
T ss_pred CCeEEEEECcchhhcchHHHHHHHHHH-cCCcEEEeCCCCC----CcCHHHHHHH----HHHHHhcCCCEEEEeCC-ccH
Confidence 379999987654333456788888876 6877764322110 1111001000 001 1347899999999 666
Q ss_pred HHHHhhh
Q 003509 769 LHASNLF 775 (814)
Q Consensus 769 LrAArlf 775 (814)
+-+++.+
T Consensus 93 iD~AKai 99 (414)
T cd08190 93 IDTAKAA 99 (414)
T ss_pred HHHHHHH
Confidence 6665543
No 263
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=44.48 E-value=64 Score=34.03 Aligned_cols=72 Identities=21% Similarity=0.160 Sum_probs=44.9
Q ss_pred EEEEEecCCch-HHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchh---
Q 003509 692 TVLVLKKPGPA-LMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV--- 767 (814)
Q Consensus 692 kVlIV~K~~~e-a~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGT--- 767 (814)
+|+|+.-++.. ..+. ++.|++ .|+.+.+-.. .+ .. .+++|.||.-||-..
T Consensus 2 ~v~Vl~~~G~n~~~~~----~~al~~-~G~~~~~i~~-------------------~~-~~-l~~~d~lilpGG~~~~d~ 55 (227)
T TIGR01737 2 KVAVIRFPGTNCDRDT----VYALRL-LGVDAEIVWY-------------------ED-GS-LPDYDGVVLPGGFSYGDY 55 (227)
T ss_pred eEEEEeCCCcCcHHHH----HHHHHH-CCCeEEEEec-------------------CC-CC-CCCCCEEEECCCCccccc
Confidence 78999888763 2333 344444 5777653211 00 01 246899999998421
Q ss_pred -----------HHHHHhhhcCCCCcEEEEeCCC
Q 003509 768 -----------ILHASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 768 -----------ILrAArlf~~s~~PILGINlGr 789 (814)
++...+.+...+.||+||-.|-
T Consensus 56 ~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~ 88 (227)
T TIGR01737 56 LRAGAIAAASPIMQEVREFAEKGVPVLGICNGF 88 (227)
T ss_pred ccccchhcchHHHHHHHHHHHcCCEEEEECHHH
Confidence 4555666667899999998874
No 264
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=44.46 E-value=58 Score=32.53 Aligned_cols=88 Identities=16% Similarity=0.054 Sum_probs=54.9
Q ss_pred EEEEEecCCc--hHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHH
Q 003509 692 TVLVLKKPGP--ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (814)
Q Consensus 692 kVlIV~K~~~--ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTIL 769 (814)
+|+++..... -.......+.+++.+ .|+++.+.+.-.+.-.. ...+ ...+..++|.+|+.+.+.+.+
T Consensus 1 ~ig~v~~~~~~~~~~~~~~g~~~~~~~-~g~~l~~~~~~~~~~~~---~~~~-------~~~~~~~~d~ii~~~~~~~~~ 69 (264)
T cd01537 1 TIGVLVPDLDNPFFAQVLKGIEEAAKA-AGYQVLLANSQNDAEKQ---LSAL-------ENLIARGVDGIIIAPSDLTAP 69 (264)
T ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHH-cCCeEEEEeCCCCHHHH---HHHH-------HHHHHcCCCEEEEecCCCcch
Confidence 3677775432 345556777788877 78888664331110000 0000 011234799999999998887
Q ss_pred HHHhhhcCCCCcEEEEeCCCc
Q 003509 770 HASNLFRGAVPPVISFNLGSL 790 (814)
Q Consensus 770 rAArlf~~s~~PILGINlGrL 790 (814)
..+..+....+|++.++...-
T Consensus 70 ~~~~~l~~~~ip~v~~~~~~~ 90 (264)
T cd01537 70 TIVKLARKAGIPVVLVDRDIP 90 (264)
T ss_pred hHHHHhhhcCCCEEEeccCCC
Confidence 767777778999999987643
No 265
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=43.96 E-value=42 Score=37.18 Aligned_cols=87 Identities=22% Similarity=0.277 Sum_probs=47.5
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCccc-ccCcccEEEEEcCchhH
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~-l~~~vDLVIvLGGDGTI 768 (814)
.++++||+.+.-.......++.+.|.+ . +++.+...+.. .|....+... .+. ...++|+||.||| |..
T Consensus 22 ~~~~lvv~~~~~~~~g~~~~v~~~l~~-~-~~~~~~~~v~~----~p~~~~v~~~----~~~~~~~~~d~IiaiGG-Gs~ 90 (332)
T cd08180 22 NKRVLIVTDPFMVKSGMLDKVTDHLDS-S-IEVEIFSDVVP----DPPIEVVAKG----IKKFLDFKPDIVIALGG-GSA 90 (332)
T ss_pred CCeEEEEeCchhhhCccHHHHHHHHHh-c-CcEEEeCCCCC----CcCHHHHHHH----HHHHHhcCCCEEEEECC-chH
Confidence 378999985432222356778888875 3 55433222110 1111101000 000 1347899999999 677
Q ss_pred HHHHhhh----c----CCCCcEEEEeC
Q 003509 769 LHASNLF----R----GAVPPVISFNL 787 (814)
Q Consensus 769 LrAArlf----~----~s~~PILGINl 787 (814)
+-+++.+ . ...+|++.|.+
T Consensus 91 ~D~aKa~a~~~~~~~~~~~~p~i~VPT 117 (332)
T cd08180 91 IDAAKAIIYFAKKLGKKKKPLFIAIPT 117 (332)
T ss_pred HHHHHHHHHHHhCCCCCCCCCEEEeCC
Confidence 7777742 1 23479999975
No 266
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=43.92 E-value=29 Score=34.59 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=26.9
Q ss_pred cCcccEEEEEcCchhHH-----HHHhhhcCCCCcEEEEeCCC
Q 003509 753 HERVDFVACLGGDGVIL-----HASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 753 ~~~vDLVIvLGGDGTIL-----rAArlf~~s~~PILGINlGr 789 (814)
..++|.||.-||.+... ...+.+....+|||||-+|.
T Consensus 39 ~~~~dgvIl~Gg~~~~~~~~~~~~~~~~~~~~~PilGIC~G~ 80 (181)
T cd01742 39 LKNPKGIILSGGPSSVYEEDAPRVDPEIFELGVPVLGICYGM 80 (181)
T ss_pred ccCCCEEEECCCcccccccccchhhHHHHhcCCCEEEEcHHH
Confidence 35789999999977542 22344555689999999884
No 267
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=43.83 E-value=47 Score=28.06 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=19.5
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHhCC
Q 003509 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMA 373 (814)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGal~aLLl~l~G 373 (814)
..+.+|+++|..|. |+..++..+.. +|
T Consensus 48 ~~~~~vv~~c~~~~-~a~~~~~~l~~-~G 74 (89)
T cd00158 48 DKDKPIVVYCRSGN-RSARAAKLLRK-AG 74 (89)
T ss_pred CCCCeEEEEeCCCc-hHHHHHHHHHH-hC
Confidence 45689999999987 77766555544 35
No 268
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=43.83 E-value=11 Score=47.98 Aligned_cols=94 Identities=21% Similarity=0.192 Sum_probs=51.8
Q ss_pred HHhhcCCCCCccc----ccccCCCCcccCcccccccchhh--HHHhhc---cCccccc----CCCccccccccccc----
Q 003509 112 MDTLCNPLTGECT----VSYEFTPEEKPLLEDKIVSVLGC--MLSLLN---KGREDVL----SGRSSIMNAYRVAD---- 174 (814)
Q Consensus 112 ~~~~~~~~~~e~~----~~~d~~~~~~~~led~i~~~~~~--~~~~ln---~gr~~~~----~~~~~~~~nf~~~~---- 174 (814)
..+||=+-+|+|. --+-|..+.-.|-.....+.|.. -...+| +|+.-|- .||. .-|..-|
T Consensus 679 iRtf~l~~~g~~~~R~v~qfhFt~Wpd~gvPe~~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRT---G~fi~iDaml~ 755 (1087)
T KOG4228|consen 679 IRTFALKKQGENPKREVRQFHFTAWPDHGVPETPTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRT---GCFIVIDAMLD 755 (1087)
T ss_pred EEeeeccccCCCCCceeeeeeeccCCCCCCcccchHHHHHHHHhccCCCcCCCCEEEECCCCCCCc---ceEEEeHHHHH
Confidence 3467777778887 33556677777777777776665 333444 4666221 1222 3344311
Q ss_pred -----c-ccccccCCCcccchhhHhhhhhH---HHHHHHhccC
Q 003509 175 -----I-SMTEDQLPPLAIFRSEMKRCCES---MHIALENYLT 208 (814)
Q Consensus 175 -----~-~~~~~~~p~l~l~r~~l~~~~~~---l~~~l~~yl~ 208 (814)
. -+.-+..+.|.--|-.|+.+=+. +|.+|..+..
T Consensus 756 ~~~~e~~vdiy~~v~~lR~QR~~mVQt~eQYiFi~~AllE~~~ 798 (1087)
T KOG4228|consen 756 RLECEGKVDIYGHVKTLRRQRNNMVQTEEQYIFIHEALLEACL 798 (1087)
T ss_pred HHHhhCccceechhHHHHhccccccccHHHHHHHHHHHHHHHh
Confidence 1 11124444666677777776555 6666665543
No 269
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=43.20 E-value=53 Score=37.80 Aligned_cols=75 Identities=15% Similarity=0.126 Sum_probs=46.9
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchhH
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGTI 768 (814)
.++|+|+=.-.+ ..|+++|.+ .|+.|.+-+... +.+++ ..++|.||.-||-|..
T Consensus 192 ~~~I~viD~g~k------~ni~~~L~~-~G~~v~vvp~~~------------------~~~~i~~~~~dgIilSgGPg~p 246 (382)
T CHL00197 192 QLKIIVIDFGVK------YNILRRLKS-FGCSITVVPATS------------------PYQDILSYQPDGILLSNGPGDP 246 (382)
T ss_pred CCEEEEEECCcH------HHHHHHHHH-CCCeEEEEcCCC------------------CHHHHhccCCCEEEEcCCCCCh
Confidence 368888877433 348888887 798887654311 11111 1267999999987642
Q ss_pred ------HHHHhhhcCCCCcEEEEeCCC
Q 003509 769 ------LHASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 769 ------LrAArlf~~s~~PILGINlGr 789 (814)
+...+.+....+||+||-+|+
T Consensus 247 ~~~~~~i~~i~~~~~~~~PilGIClGh 273 (382)
T CHL00197 247 SAIHYGIKTVKKLLKYNIPIFGICMGH 273 (382)
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEcHHH
Confidence 122333334579999999874
No 270
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=42.61 E-value=31 Score=38.96 Aligned_cols=87 Identities=11% Similarity=0.193 Sum_probs=50.3
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEE--EEccchhhHhhcCCCCccceeeeccCcccc-cCccc---EEEEEc
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNI--LVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVD---FVACLG 763 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V--~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vD---LVIvLG 763 (814)
.++++|++...-... ...++.+.|.+ .|+++ ++-+.... .+....+... .+.+ ..++| +||.||
T Consensus 23 ~~rvlvVtd~~v~~~-~~~~l~~~L~~-~g~~~~~~~~~~~e~----~k~~~~v~~~----~~~~~~~~~dr~~~IIAvG 92 (355)
T cd08197 23 ADKYLLVTDSNVEDL-YGHRLLEYLRE-AGAPVELLSVPSGEE----HKTLSTLSDL----VERALALGATRRSVIVALG 92 (355)
T ss_pred CCeEEEEECccHHHH-HHHHHHHHHHh-cCCceEEEEeCCCCC----CCCHHHHHHH----HHHHHHcCCCCCcEEEEEC
Confidence 478999987664222 56778888876 56653 22111100 0110000000 0001 22455 999999
Q ss_pred CchhHHHHHhhhcC---CCCcEEEEeC
Q 003509 764 GDGVILHASNLFRG---AVPPVISFNL 787 (814)
Q Consensus 764 GDGTILrAArlf~~---s~~PILGINl 787 (814)
| |+++-++..++. ..+|++-|.+
T Consensus 93 G-Gsv~D~ak~~A~~~~rgip~I~IPT 118 (355)
T cd08197 93 G-GVVGNIAGLLAALLFRGIRLVHIPT 118 (355)
T ss_pred C-cHHHHHHHHHHHHhccCCCEEEecC
Confidence 8 899998887652 4799999987
No 271
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=42.40 E-value=53 Score=37.08 Aligned_cols=92 Identities=15% Similarity=0.179 Sum_probs=51.3
Q ss_pred cCCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEE--EccchhhHhhcCCCCccceeeecc-CcccccCcccEEEEEcCc
Q 003509 689 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNIL--VEPDVHDIFARIPGFGFVQTFYLQ-DTSDLHERVDFVACLGGD 765 (814)
Q Consensus 689 ~~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~--ve~~~a~~l~~~p~~~~v~~~~~~-~~~~l~~~vDLVIvLGGD 765 (814)
.+++++||+...-.. ....++.+.|.. .|+++. +-+.... .+....+...+.. .......++|+||.+||
T Consensus 25 ~~~~~lvVtd~~v~~-~~~~~v~~~l~~-~g~~~~~~v~~~~e~----~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGG- 97 (354)
T cd08199 25 GSGRRFVVVDQNVDK-LYGKKLREYFAH-HNIPLTILVLRAGEA----AKTMDTVLKIVDALDAFGISRRREPVLAIGG- 97 (354)
T ss_pred CCCeEEEEECccHHH-HHHHHHHHHHHh-cCCceEEEEeCCCCC----CCCHHHHHHHHHHHHHcCCCCCCCEEEEECC-
Confidence 568999998554321 134678888876 566553 2121100 0010001000000 00011234499999998
Q ss_pred hhHHHHHhhhc---CCCCcEEEEeC
Q 003509 766 GVILHASNLFR---GAVPPVISFNL 787 (814)
Q Consensus 766 GTILrAArlf~---~s~~PILGINl 787 (814)
|+++-++..++ ..++|++-|.+
T Consensus 98 G~v~D~ak~~A~~~~rg~p~i~VPT 122 (354)
T cd08199 98 GVLTDVAGLAASLYRRGTPYVRIPT 122 (354)
T ss_pred cHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 89999888876 56889888876
No 272
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=42.23 E-value=29 Score=38.91 Aligned_cols=76 Identities=21% Similarity=0.362 Sum_probs=38.2
Q ss_pred CEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHHH
Q 003509 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (814)
Q Consensus 691 kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTILr 770 (814)
++++||+.+.-.......++.+.|.+ ....++ +.+. ..|....+..... -......++|+||.||| |+++-
T Consensus 24 ~r~lvVtd~~~~~~g~~~~v~~~L~~-~~~~~~--~~v~----~~pt~~~v~~~~~-~~~~~~~~~D~IIaiGG-GSviD 94 (355)
T TIGR03405 24 RRVVVVTFPEARALGLARRLEALLGG-RLAALI--DDVA----PNPDVAQLDGLYA-RLWGDEGACDLVIALGG-GSVID 94 (355)
T ss_pred CeEEEEECcchhhcchHHHHHHHhcc-CcEEEe--CCCC----CCcCHHHHHHHHH-HHHhcCCCCCEEEEeCC-ccHHH
Confidence 79999986543333456778888764 333332 1111 0011000000000 00011135999999999 77777
Q ss_pred HHhhh
Q 003509 771 ASNLF 775 (814)
Q Consensus 771 AArlf 775 (814)
+++.+
T Consensus 95 ~aK~i 99 (355)
T TIGR03405 95 TAKVL 99 (355)
T ss_pred HHHHH
Confidence 77653
No 273
>COG4069 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.12 E-value=24 Score=39.38 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=28.5
Q ss_pred cccCcccEEEEEcCchhHHHHHhhhcCCCCcEEEEeCC
Q 003509 751 DLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLG 788 (814)
Q Consensus 751 ~l~~~vDLVIvLGGDGTILrAArlf~~s~~PILGINlG 788 (814)
++.+..+++|++|-|=|.+ |+..+..-++||+||--|
T Consensus 262 el~~~~~lvvTvGDDTT~v-agdIl~RfgipiiGItDg 298 (367)
T COG4069 262 ELIEGAGLVVTVGDDTTEV-AGDILYRFGIPIIGITDG 298 (367)
T ss_pred HhhccCceEEEEcCcchhH-HHHHHHhcCCcEEecccC
Confidence 3456788999999997766 455556679999999655
No 274
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=41.86 E-value=40 Score=34.41 Aligned_cols=74 Identities=12% Similarity=0.200 Sum_probs=44.8
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchhH---
Q 003509 693 VLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI--- 768 (814)
Q Consensus 693 VlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGTI--- 768 (814)
|+||-+.+. .+..|+++|.+ .|+++.+..... .+.+++ ..+.|.||..||=|+.
T Consensus 2 il~idn~Ds----ft~nl~~~l~~-~g~~v~v~~~~~-----------------~~~~~~~~~~~d~iils~GPg~p~~~ 59 (187)
T PRK08007 2 ILLIDNYDS----FTWNLYQYFCE-LGADVLVKRNDA-----------------LTLADIDALKPQKIVISPGPCTPDEA 59 (187)
T ss_pred EEEEECCCc----cHHHHHHHHHH-CCCcEEEEeCCC-----------------CCHHHHHhcCCCEEEEcCCCCChHHC
Confidence 666666665 23457788877 687776633210 011111 1257889999997654
Q ss_pred ---HHHHhhhcCCCCcEEEEeCCC
Q 003509 769 ---LHASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 769 ---LrAArlf~~s~~PILGINlGr 789 (814)
+...+.+ ...+|||||-+|+
T Consensus 60 ~~~~~~~~~~-~~~~PiLGIClG~ 82 (187)
T PRK08007 60 GISLDVIRHY-AGRLPILGVCLGH 82 (187)
T ss_pred CccHHHHHHh-cCCCCEEEECHHH
Confidence 3344443 3579999999874
No 275
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=41.74 E-value=33 Score=34.69 Aligned_cols=34 Identities=18% Similarity=0.126 Sum_probs=25.4
Q ss_pred ccEEEEEcCchh-----HHHHHhhhcCCCCcEEEEeCCC
Q 003509 756 VDFVACLGGDGV-----ILHASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 756 vDLVIvLGGDGT-----ILrAArlf~~s~~PILGINlGr 789 (814)
.|.||..||.+. .....+.+....+|||||-+|.
T Consensus 42 ~~glii~Gg~~~~~~~~~~~~i~~~~~~~~PilGIC~G~ 80 (188)
T TIGR00888 42 PKGIILSGGPSSVYAENAPRADEKIFELGVPVLGICYGM 80 (188)
T ss_pred CCEEEECCCCCCcCcCCchHHHHHHHhCCCCEEEECHHH
Confidence 468999999765 3355566566799999998874
No 276
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=41.01 E-value=88 Score=34.66 Aligned_cols=59 Identities=20% Similarity=0.064 Sum_probs=41.0
Q ss_pred CcccccCcccEEEEEcCchhHHHHHhhhcCCCCcEEEEeCC-----------C--cccCC---CCCcccHHHHHhhhhc
Q 003509 748 DTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLG-----------S--LGFLT---SHPVSSYLNSLCFLSL 810 (814)
Q Consensus 748 ~~~~l~~~vDLVIvLGGDGTILrAArlf~~s~~PILGINlG-----------r--LGFLT---e~~~dei~eaLe~L~~ 810 (814)
+...+..++|++|+=||=||+..+.. .++|++.|-.+ . .|..- +++.+++.++|++++.
T Consensus 297 p~~~ll~~~d~~I~hgG~~t~~eal~----~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~ 371 (401)
T cd03784 297 PHDWLLPRCAAVVHHGGAGTTAAALR----AGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLLD 371 (401)
T ss_pred CHHHHhhhhheeeecCCchhHHHHHH----cCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhC
Confidence 44566778999999999999988876 47888888431 1 23222 2356778788877653
No 277
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=40.58 E-value=98 Score=31.88 Aligned_cols=71 Identities=14% Similarity=0.203 Sum_probs=43.1
Q ss_pred EEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCc--hh--
Q 003509 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD--GV-- 767 (814)
Q Consensus 692 kVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGD--GT-- 767 (814)
+|+|+-...... ..+.++|++ .|.++.+... ..++ .++|.+|.-||- +.
T Consensus 2 ~~~v~~~~~~~~----~~~~~~l~~-~G~~~~~~~~---------------------~~~~-~~~d~iii~G~~~~~~~~ 54 (200)
T PRK13143 2 MIVIIDYGVGNL----RSVSKALER-AGAEVVITSD---------------------PEEI-LDADGIVLPGVGAFGAAM 54 (200)
T ss_pred eEEEEECCCccH----HHHHHHHHH-CCCeEEEECC---------------------HHHH-ccCCEEEECCCCCHHHHH
Confidence 567776655443 456677776 6877765321 0111 368988887752 22
Q ss_pred -----HHHHHhhhcCCCCcEEEEeCCC
Q 003509 768 -----ILHASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 768 -----ILrAArlf~~s~~PILGINlGr 789 (814)
+....+.+...+.||+||=.|.
T Consensus 55 ~~~~~~~~~i~~~~~~~~PilgIC~G~ 81 (200)
T PRK13143 55 ENLSPLRDVILEAARSGKPFLGICLGM 81 (200)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECHHH
Confidence 3444555556789999997763
No 278
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=40.25 E-value=42 Score=42.25 Aligned_cols=77 Identities=16% Similarity=0.202 Sum_probs=43.3
Q ss_pred cCCEEEEEecCCchHHHHHHHHHHHHh--cCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCc
Q 003509 689 TPRTVLVLKKPGPALMEEAKEVASFLY--HQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGD 765 (814)
Q Consensus 689 ~~kkVlIV~K~~~ea~~~a~eLi~~L~--e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGD 765 (814)
..++++||+...-.......++.+.|. . .++++.+-..+.. .|....+... .+.. ..++|+||.|||
T Consensus 479 ~~~~~lvVtd~~~~~~g~~~~v~~~L~~~~-~~i~~~~~~~v~~----np~~~~v~~~----~~~~~~~~~D~IIaiGG- 548 (862)
T PRK13805 479 GKKRAFIVTDRFMVELGYVDKVTDVLKKRE-NGVEYEVFSEVEP----DPTLSTVRKG----AELMRSFKPDTIIALGG- 548 (862)
T ss_pred CCCEEEEEECcchhhcchHHHHHHHHhccc-CCCeEEEeCCCCC----CcCHHHHHHH----HHHHHhcCCCEEEEeCC-
Confidence 358999998644333335677888887 4 5777654332111 1111011000 0011 247899999998
Q ss_pred hhHHHHHhhh
Q 003509 766 GVILHASNLF 775 (814)
Q Consensus 766 GTILrAArlf 775 (814)
|+.+-+++.+
T Consensus 549 GSviD~AK~i 558 (862)
T PRK13805 549 GSPMDAAKIM 558 (862)
T ss_pred chHHHHHHHH
Confidence 7777777665
No 279
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=40.21 E-value=1.1e+02 Score=30.77 Aligned_cols=99 Identities=17% Similarity=0.084 Sum_probs=57.6
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhh--HhhcCCCCccceeeeccCcccc-cCcccEEEEEcCc-
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHD--IFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGD- 765 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~--~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGD- 765 (814)
+++|+|+..++-+..+... -.+.|.+ .|..+.+...... ......+...+. ......+. .++.|.+++-||+
T Consensus 2 ~~~i~i~~~~g~e~~E~~~-p~~~l~~-ag~~v~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~ydal~ipGG~~ 77 (188)
T COG0693 2 MKKIAILLADGFEDLELIV-PYDVLRR-AGFEVDVASPEGKGKSVTSKRGGLVVA--DDKAFDDADAADYDALVIPGGDH 77 (188)
T ss_pred CceeEEEecCcceehhHhH-HHHHHHH-CCCeEEEEecCCCcceeecccCcceEe--cccccccCCHhHCCEEEECCCcc
Confidence 5789999988876555443 3344444 4665544332221 111111100000 00111222 3689999999994
Q ss_pred --------hhHHHHHhhhcCCCCcEEEEeCCCccc
Q 003509 766 --------GVILHASNLFRGAVPPVISFNLGSLGF 792 (814)
Q Consensus 766 --------GTILrAArlf~~s~~PILGINlGrLGF 792 (814)
-.+++-++.|...+.||.+|--|..-+
T Consensus 78 ~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L 112 (188)
T COG0693 78 GPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVL 112 (188)
T ss_pred chhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHH
Confidence 468888999998899999997775433
No 280
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=39.31 E-value=87 Score=31.35 Aligned_cols=96 Identities=11% Similarity=-0.111 Sum_probs=57.4
Q ss_pred EEEEecCCc--hHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHHH
Q 003509 693 VLVLKKPGP--ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (814)
Q Consensus 693 VlIV~K~~~--ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTILr 770 (814)
|+++..... -.......+.+.+.+ .|+++.+...-.+.-. ... .-...+..++|.+|+.+.|.+-+.
T Consensus 2 i~~v~~~~~~~~~~~~~~g~~~~~~~-~g~~~~~~~~~~~~~~------~~~----~~~~~~~~~~d~iii~~~~~~~~~ 70 (264)
T cd06267 2 IGVIVPDISNPFFAELLRGIEEAARE-AGYSVLLCNSDEDPEK------ERE----ALELLLSRRVDGIILAPSRLDDEL 70 (264)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHH-cCCEEEEEcCCCCHHH------HHH----HHHHHHHcCcCEEEEecCCcchHH
Confidence 566665433 344556677788776 6888776433111000 000 000122458999999999999888
Q ss_pred HHhhhcCCCCcEEEEeCCCc-ccCCCCCccc
Q 003509 771 ASNLFRGAVPPVISFNLGSL-GFLTSHPVSS 800 (814)
Q Consensus 771 AArlf~~s~~PILGINlGrL-GFLTe~~~de 800 (814)
.+.+...++||+.++...- .++.-+..++
T Consensus 71 -~~~~~~~~ipvv~~~~~~~~~~~~~v~~d~ 100 (264)
T cd06267 71 -LEELAALGIPVVLVDRPLDGLGVDSVGIDN 100 (264)
T ss_pred -HHHHHHcCCCEEEecccccCCCCCEEeecc
Confidence 7777788999999986532 3344444443
No 281
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=39.18 E-value=59 Score=37.21 Aligned_cols=95 Identities=17% Similarity=0.207 Sum_probs=51.9
Q ss_pred cCCEEEEEecCCc-hH-HHHHHHHHHHHhcCCCeE--EEEccchhhHhhcCCCCc---cceeeeccCcccccCcccEEEE
Q 003509 689 TPRTVLVLKKPGP-AL-MEEAKEVASFLYHQEKMN--ILVEPDVHDIFARIPGFG---FVQTFYLQDTSDLHERVDFVAC 761 (814)
Q Consensus 689 ~~kkVlIV~K~~~-ea-~~~a~eLi~~L~e~~Gi~--V~ve~~~a~~l~~~p~~~---~v~~~~~~~~~~l~~~vDLVIv 761 (814)
..++++||+...- +. ......+...|.+ .|++ ++... ..........+ .+...+..-.+.-.++.|+||.
T Consensus 29 ~~~r~lvVtD~~v~~~~~~~~~~l~~~L~~-~g~~~~v~~~~--~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIa 105 (369)
T cd08198 29 ARPKVLVVIDSGVAQANPQLASDIQAYAAA-HADALRLVAPP--HIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIA 105 (369)
T ss_pred CCCeEEEEECcchHHhhhhHHHHHHHHHHh-cCCceeeeeee--EecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEE
Confidence 3578999998775 43 3456778888876 5733 22111 00000000000 0000000000111234569999
Q ss_pred EcCchhHHHHHhhhc---CCCCcEEEEeC
Q 003509 762 LGGDGVILHASNLFR---GAVPPVISFNL 787 (814)
Q Consensus 762 LGGDGTILrAArlf~---~s~~PILGINl 787 (814)
||| |+++-++..++ ..++|++-|.+
T Consensus 106 lGG-G~v~D~ag~vA~~~~rGip~I~IPT 133 (369)
T cd08198 106 IGG-GAVLDAVGYAAATAHRGVRLIRIPT 133 (369)
T ss_pred ECC-hHHHHHHHHHHHHhcCCCCEEEECC
Confidence 999 89998888775 45899998874
No 282
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=39.03 E-value=1.3e+02 Score=32.50 Aligned_cols=96 Identities=19% Similarity=0.163 Sum_probs=48.7
Q ss_pred cCCEEEEEecCCc-hHHHHHHHHHHHHhcCCCeEEEEccc-hhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCch
Q 003509 689 TPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPD-VHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (814)
Q Consensus 689 ~~kkVlIV~K~~~-ea~~~a~eLi~~L~e~~Gi~V~ve~~-~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDG 766 (814)
..|+|+|++.+.. ......+.+.+...+ .|+++....- ..+.+. .-...+.++.|.+ .++.|+
T Consensus 130 ~~k~igvl~~~~~~~~~~~~~~~~~~a~~-~g~~l~~~~v~~~~~~~-------------~~~~~l~~~~da~-~~~~~~ 194 (294)
T PF04392_consen 130 DAKRIGVLYDPSEPNSVAQIEQLRKAAKK-LGIELVEIPVPSSEDLE-------------QALEALAEKVDAL-YLLPDN 194 (294)
T ss_dssp T--EEEEEEETT-HHHHHHHHHHHHHHHH-TT-EEEEEEESSGGGHH-------------HHHHHHCTT-SEE-EE-S-H
T ss_pred CCCEEEEEecCCCccHHHHHHHHHHHHHH-cCCEEEEEecCcHhHHH-------------HHHHHhhccCCEE-EEECCc
Confidence 4689999999886 355666777777776 7888753211 001110 1122345678854 556888
Q ss_pred hHHHHHh----hhcCCCCcEEEEeCC--CcccCCCCCcc
Q 003509 767 VILHASN----LFRGAVPPVISFNLG--SLGFLTSHPVS 799 (814)
Q Consensus 767 TILrAAr----lf~~s~~PILGINlG--rLGFLTe~~~d 799 (814)
++..... ......+||+|.+-. .-|.|..+..+
T Consensus 195 ~~~~~~~~i~~~~~~~~iPv~~~~~~~v~~Gal~~~~~~ 233 (294)
T PF04392_consen 195 LVDSNFEAILQLANEAKIPVFGSSDFYVKAGALGGYSVD 233 (294)
T ss_dssp HHHHTHHHHHHHCCCTT--EEESSHHHHCTT-SEEEE--
T ss_pred chHhHHHHHHHHHHhcCCCEEECCHHHhcCCcEEEEccC
Confidence 8875433 345689999998632 23555544443
No 283
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=38.13 E-value=1.1e+02 Score=29.70 Aligned_cols=102 Identities=18% Similarity=0.152 Sum_probs=54.4
Q ss_pred EEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccch-hhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCch---
Q 003509 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDV-HDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDG--- 766 (814)
Q Consensus 692 kVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~-a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDG--- 766 (814)
+|+|+.-++-+..+.+ .+.+.|.. .|+++.+-... ........+...+. .+...++. ..+.|.+++.||.+
T Consensus 1 ~v~il~~~gf~~~e~~-~~~~~l~~-a~~~v~~vs~~~~~~v~~~~g~~~i~--~d~~~~~~~~~~~D~lvvpGG~~~~~ 76 (165)
T cd03134 1 KVAILAADGFEDVELT-YPLYRLRE-AGAEVVVAGPEAGGEIQGKHGYDTVT--VDLTIADVDADDYDALVIPGGTNPDK 76 (165)
T ss_pred CEEEEcCCCchHHHHH-HHHHHHHH-CCCEEEEEccCCCcccccCcCceeec--CCCChHHCCHHHCCEEEECCCCChhh
Confidence 4777776665444432 24455555 57777553221 11111111110011 01122222 23689999999953
Q ss_pred -----hHHHHHhhhcCCCCcEEEEeCCC-----cccCCCCC
Q 003509 767 -----VILHASNLFRGAVPPVISFNLGS-----LGFLTSHP 797 (814)
Q Consensus 767 -----TILrAArlf~~s~~PILGINlGr-----LGFLTe~~ 797 (814)
.++...+.+.....||.+|-.|. .|.|..-.
T Consensus 77 ~~~~~~~~~~l~~~~~~~~~i~~ic~G~~~La~aglL~g~~ 117 (165)
T cd03134 77 LRRDPDAVAFVRAFAEAGKPVAAICHGPWVLISAGVVRGRK 117 (165)
T ss_pred hccCHHHHHHHHHHHHcCCeEEEEchHHHHHHhcCccCCCE
Confidence 34555666667899999998874 56666543
No 284
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=37.94 E-value=82 Score=33.62 Aligned_cols=57 Identities=23% Similarity=0.191 Sum_probs=39.8
Q ss_pred CcccccCcccEEEEEcCchhHHHHHhhhcCCCCcEEEEeC-------------CCcccCC-----CCCcccHHHHHhhh
Q 003509 748 DTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------------GSLGFLT-----SHPVSSYLNSLCFL 808 (814)
Q Consensus 748 ~~~~l~~~vDLVIvLGGDGTILrAArlf~~s~~PILGINl-------------GrLGFLT-----e~~~dei~eaLe~L 808 (814)
+..++...+|+||+-||-+|+--++. .++|+|-|-. ..+|... +++++.+.+.|++|
T Consensus 243 ~~~~~m~~ad~vIs~~G~~t~~Ea~~----~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 243 DFAELMAAADLVISKGGYTTISEALA----LGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred HHHHHHHhCCEEEECCCHHHHHHHHH----cCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHHhcC
Confidence 44556788999999999999988876 4678888864 2344432 34556666666654
No 285
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=37.74 E-value=2.1e+02 Score=30.67 Aligned_cols=81 Identities=10% Similarity=0.042 Sum_probs=50.7
Q ss_pred HhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCC-cEEEeCc
Q 003509 277 EEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKK-PLYLHSK 355 (814)
Q Consensus 277 ~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d~~~~-PVLVHCt 355 (814)
.+-++..++.|++..+++-....-.+.+.....+.+...|+..+.++=. ....+++++..+++.+....+. |+-+||.
T Consensus 115 ~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT-~G~~~P~~v~~lv~~l~~~~~~~~l~~H~H 193 (263)
T cd07943 115 EQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVTDS-AGAMLPDDVRERVRALREALDPTPVGFHGH 193 (263)
T ss_pred HHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEcCC-CCCcCHHHHHHHHHHHHHhCCCceEEEEec
Confidence 4456777889999999983322001111112233456678888887633 4456788888888887655454 8888877
Q ss_pred cCC
Q 003509 356 EGV 358 (814)
Q Consensus 356 AGK 358 (814)
--.
T Consensus 194 n~~ 196 (263)
T cd07943 194 NNL 196 (263)
T ss_pred CCc
Confidence 555
No 286
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=37.54 E-value=1e+02 Score=32.06 Aligned_cols=36 Identities=22% Similarity=0.180 Sum_probs=22.8
Q ss_pred CcccEEEEEcCch--hH---HH------H-HhhhcCCCCcEEEEeCCC
Q 003509 754 ERVDFVACLGGDG--VI---LH------A-SNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 754 ~~vDLVIvLGGDG--TI---Lr------A-Arlf~~s~~PILGINlGr 789 (814)
+++|.||.-||-- |. |+ + .+.......||+||-+|.
T Consensus 40 ~~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~ 87 (209)
T PRK13146 40 AAADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAGRPFLGICVGM 87 (209)
T ss_pred cCCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHhCCCcEEEECHHH
Confidence 5789999988621 21 11 2 222224689999999883
No 287
>PRK11249 katE hydroperoxidase II; Provisional
Probab=37.28 E-value=1.3e+02 Score=37.83 Aligned_cols=100 Identities=12% Similarity=-0.031 Sum_probs=57.1
Q ss_pred hcccccCCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEE
Q 003509 684 LMWKTTPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACL 762 (814)
Q Consensus 684 l~w~~~~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvL 762 (814)
..|.-.-++|+|+.-.+-+..+ +..+.+.|.. .|+.|.+-......+....+. .+. .+...... ....|.|++.
T Consensus 591 ~~~~~~gRKIaILVaDG~d~~e-v~~~~daL~~-AGa~V~VVSp~~G~V~~s~G~-~I~--aD~t~~~~~Sv~FDAVvVP 665 (752)
T PRK11249 591 PDGDIKGRKVAILLNDGVDAAD-LLAILKALKA-KGVHAKLLYPRMGEVTADDGT-VLP--IAATFAGAPSLTFDAVIVP 665 (752)
T ss_pred CCCCccccEEEEEecCCCCHHH-HHHHHHHHHH-CCCEEEEEECCCCeEECCCCC-EEe--cceeeccCCccCCCEEEEC
Confidence 4566677899999987754333 3457777776 688776643211111111110 010 01112222 1258999999
Q ss_pred cCc---------hhHHHHHhhhcCCCCcEEEEeCC
Q 003509 763 GGD---------GVILHASNLFRGAVPPVISFNLG 788 (814)
Q Consensus 763 GGD---------GTILrAArlf~~s~~PILGINlG 788 (814)
||. +-++.-++.+.....||.+|.-|
T Consensus 666 GG~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG 700 (752)
T PRK11249 666 GGKANIADLADNGDARYYLLEAYKHLKPIALAGDA 700 (752)
T ss_pred CCchhHHHHhhCHHHHHHHHHHHHcCCEEEEeCcc
Confidence 994 34555566666678899988765
No 288
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=37.16 E-value=79 Score=31.71 Aligned_cols=37 Identities=24% Similarity=0.246 Sum_probs=27.0
Q ss_pred cCcccEEEEEcCchhH-----------HHHHhhhcCCCCcEEEEeCCC
Q 003509 753 HERVDFVACLGGDGVI-----------LHASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 753 ~~~vDLVIvLGGDGTI-----------LrAArlf~~s~~PILGINlGr 789 (814)
...+|.||.-||-++. +...+.+....+||+||-+|.
T Consensus 44 ~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~ 91 (188)
T cd01741 44 LDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGH 91 (188)
T ss_pred cccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccH
Confidence 3578999999997654 333444445689999999874
No 289
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=36.80 E-value=2.3e+02 Score=24.99 Aligned_cols=87 Identities=18% Similarity=0.133 Sum_probs=56.2
Q ss_pred CEEEEEecCCc-hHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHH
Q 003509 691 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (814)
Q Consensus 691 kkVlIV~K~~~-ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTIL 769 (814)
++|+++.-.+- ...-+..++.+++.+ .++.+.++......+ .....++|+||+---
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~~~~~-~~i~~~v~~~~~~~~-----------------~~~~~~~Dliist~~----- 57 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKE-NGIDVKVEQCKIAEV-----------------PSLLDDADLIVSTTK----- 57 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHH-CCCceEEEEecHHHh-----------------hcccCCCcEEEEcCC-----
Confidence 47888888876 444556778888865 677665532211111 112347898886321
Q ss_pred HHHhhhcCCCCcEEEEeCCCcccCCCCCcccHHHHHhhh
Q 003509 770 HASNLFRGAVPPVISFNLGSLGFLTSHPVSSYLNSLCFL 808 (814)
Q Consensus 770 rAArlf~~s~~PILGINlGrLGFLTe~~~dei~eaLe~L 808 (814)
.-...+.|++-|+ .||++.+.+++.+.|..+
T Consensus 58 ----~~~~~~~p~i~v~----~~l~~~d~~~i~~~I~~~ 88 (89)
T cd05566 58 ----VPEDYGIPVINGL----PFLTGIGEDKVYEEILEA 88 (89)
T ss_pred ----cCCCCCCCEEEEe----eccccCChHHHHHHHHHh
Confidence 1123467998887 599999999999988765
No 290
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=35.13 E-value=1.6e+02 Score=31.51 Aligned_cols=58 Identities=17% Similarity=0.194 Sum_probs=39.4
Q ss_pred CcccccCcccEEEEEcCchhHHHHHhhhcCCCCcEEEEeCC----------------CcccCCCC---CcccHHHHHhhh
Q 003509 748 DTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLG----------------SLGFLTSH---PVSSYLNSLCFL 808 (814)
Q Consensus 748 ~~~~l~~~vDLVIvLGGDGTILrAArlf~~s~~PILGINlG----------------rLGFLTe~---~~dei~eaLe~L 808 (814)
+..++...+|++|+-+|=.|++-|+. .++|++.++.+ ..|++.+. +++++.++|.++
T Consensus 243 ~~~~~l~~ad~~v~~~g~~~l~Ea~~----~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~l 318 (348)
T TIGR01133 243 NMAAAYAAADLVISRAGASTVAELAA----AGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKL 318 (348)
T ss_pred CHHHHHHhCCEEEECCChhHHHHHHH----cCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHH
Confidence 44455678999999988335555543 47899987652 35787653 377788888776
Q ss_pred h
Q 003509 809 S 809 (814)
Q Consensus 809 ~ 809 (814)
+
T Consensus 319 l 319 (348)
T TIGR01133 319 L 319 (348)
T ss_pred H
Confidence 5
No 291
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=34.93 E-value=81 Score=27.67 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=38.6
Q ss_pred CCEEEEEecCCc--hHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcC
Q 003509 690 PRTVLVLKKPGP--ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGG 764 (814)
Q Consensus 690 ~kkVlIV~K~~~--ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGG 764 (814)
|..|.|+.-..+ +....+.+++..|+. .|+.|.++... ..++. . + .. -....+.++|+||.
T Consensus 1 P~qv~i~p~~~~~~~~~~~a~~la~~Lr~-~g~~v~~d~~~-~~l~k--~------i---~~-a~~~g~~~~iiiG~ 63 (94)
T cd00861 1 PFDVVIIPMNMKDEVQQELAEKLYAELQA-AGVDVLLDDRN-ERPGV--K------F---AD-ADLIGIPYRIVVGK 63 (94)
T ss_pred CeEEEEEEcCCCcHHHHHHHHHHHHHHHH-CCCEEEEECCC-CCccc--c------h---hH-HHhcCCCEEEEECC
Confidence 456777765442 567788899999987 79999886532 12211 0 0 00 11357899999994
No 292
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=34.78 E-value=1.3e+02 Score=33.69 Aligned_cols=81 Identities=16% Similarity=0.268 Sum_probs=47.9
Q ss_pred CEEEEEecCCc-hHHHHHHHHHHHHhcCCC-eEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCchh
Q 003509 691 RTVLVLKKPGP-ALMEEAKEVASFLYHQEK-MNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGV 767 (814)
Q Consensus 691 kkVlIV~K~~~-ea~~~a~eLi~~L~e~~G-i~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDGT 767 (814)
++++||+...- +. ...++.+.|.+ .+ +.+++.++ +....+... .+.+ ..++|+||.||| |+
T Consensus 35 ~~~livtd~~~~~~--~~~~l~~~l~~-~~~~~~~~~~~--------~t~~~v~~~----~~~~~~~~~d~IIaiGG-Gs 98 (350)
T PRK00843 35 GRALIVTGPTTKKI--AGDRVEENLED-AGDVEVVIVDE--------ATMEEVEKV----EEKAKDVNAGFLIGVGG-GK 98 (350)
T ss_pred CeEEEEECCcHHHH--HHHHHHHHHHh-cCCeeEEeCCC--------CCHHHHHHH----HHHhhccCCCEEEEeCC-ch
Confidence 68999987765 33 24567777765 44 22222221 110001000 0111 235899999999 89
Q ss_pred HHHHHhhhcC-CCCcEEEEeC
Q 003509 768 ILHASNLFRG-AVPPVISFNL 787 (814)
Q Consensus 768 ILrAArlf~~-s~~PILGINl 787 (814)
++-+++.++. ..+|++-|.+
T Consensus 99 v~D~ak~vA~~rgip~I~IPT 119 (350)
T PRK00843 99 VIDVAKLAAYRLGIPFISVPT 119 (350)
T ss_pred HHHHHHHHHHhcCCCEEEeCC
Confidence 9988887763 5889998875
No 293
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=33.49 E-value=1.6e+02 Score=35.97 Aligned_cols=89 Identities=11% Similarity=0.096 Sum_probs=51.6
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecC---------CCCCCCHHHHHHHHHHHhcC
Q 003509 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVE---------VRTAPTMEQVEKFASLVSNS 345 (814)
Q Consensus 275 pT~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~---------d~~~ps~e~v~~fleiL~d~ 345 (814)
++.+++..+.+.+=-.|||.|+.+ + |. .-...|.. ++|+. ....|+.+.+++.+.-+--.
T Consensus 11 Is~~eL~~~l~~~~vvIIDvR~~~-e---Y~-----~GHIPGAv--~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~ 79 (610)
T PRK09629 11 IEPNDLLERLDAPELILVDLTSSA-R---YE-----AGHIRGAR--FVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHN 79 (610)
T ss_pred ecHHHHHHHhcCCCEEEEECCChH-H---HH-----hCCCCCcE--EcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCC
Confidence 577777776655434699999854 1 21 01223433 34322 11235566777766655334
Q ss_pred CCCcEEEeCccCCChHHHHHHHHHHhCCCC
Q 003509 346 SKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 346 ~~~PVLVHCtAGKDRTGal~aLLl~l~GV~ 375 (814)
.+.+|++.|..|..+++-++.++ .++|..
T Consensus 80 ~d~~VVvYd~~g~~~A~R~~w~L-~~~G~~ 108 (610)
T PRK09629 80 PDAVYVVYDDEGGGWAGRFIWLL-DVIGHS 108 (610)
T ss_pred CCCEEEEECCCCCchHHHHHHHH-HHcCCC
Confidence 57899999999876766444333 446764
No 294
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=33.41 E-value=2.2e+02 Score=30.08 Aligned_cols=75 Identities=15% Similarity=0.228 Sum_probs=44.6
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCC--eEEEEccchhhHhhcCCCCccceeeeccCcccc-cCcccEEEEEcCch
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEK--MNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDG 766 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~G--i~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l-~~~vDLVIvLGGDG 766 (814)
+++|+|+=|.+.= +-.|++||.+ -| +.|+..+.... ..+ ..+.|.||.==|=|
T Consensus 1 ~~~IL~IDNyDSF----tyNLv~yl~~-lg~~v~V~rnd~~~~-------------------~~~~~~~pd~iviSPGPG 56 (191)
T COG0512 1 MMMILLIDNYDSF----TYNLVQYLRE-LGAEVTVVRNDDISL-------------------ELIEALKPDAIVISPGPG 56 (191)
T ss_pred CceEEEEECccch----HHHHHHHHHH-cCCceEEEECCccCH-------------------HHHhhcCCCEEEEcCCCC
Confidence 4578888877762 3456677776 45 44443321110 001 12346555555544
Q ss_pred h------HHHHHhhhcCCCCcEEEEeCCC
Q 003509 767 V------ILHASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 767 T------ILrAArlf~~s~~PILGINlGr 789 (814)
| .+-+.+.+ ...+|||||-||+
T Consensus 57 ~P~d~G~~~~~i~~~-~~~~PiLGVCLGH 84 (191)
T COG0512 57 TPKDAGISLELIRRF-AGRIPILGVCLGH 84 (191)
T ss_pred ChHHcchHHHHHHHh-cCCCCEEEECccH
Confidence 4 77888888 4579999999997
No 295
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=33.40 E-value=9.7 Score=34.60 Aligned_cols=18 Identities=50% Similarity=1.053 Sum_probs=13.5
Q ss_pred CCCCCCcc----------CCCCCchHHH
Q 003509 77 DPSQLPWI----------GPVPGDIAEV 94 (814)
Q Consensus 77 ~~~~~~~~----------~~~~~~~~~~ 94 (814)
.+.||||| |-.||||.+|
T Consensus 36 ~~~qLPkI~~~DPva~~lgak~GdvVkI 63 (80)
T COG2012 36 EPEQLPKIKASDPVAKALGAKPGDVVKI 63 (80)
T ss_pred CHHHCCcccccChhHHHccCCCCcEEEE
Confidence 35688886 7789998764
No 296
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=33.08 E-value=3.1e+02 Score=29.33 Aligned_cols=78 Identities=8% Similarity=0.079 Sum_probs=45.9
Q ss_pred HHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCC
Q 003509 280 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGV 358 (814)
Q Consensus 280 la~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d~~~~PVLVHCtAGK 358 (814)
++..++.|+...+++-....-.+.+.......+...|+..+.++=. ....+++++..++..+.+..+-|+-+||.--.
T Consensus 116 i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT-~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hn~~ 193 (259)
T cd07939 116 VGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADT-VGILDPFTTYELIRRLRAATDLPLEFHAHNDL 193 (259)
T ss_pred HHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 4466778998888774332111111111223345678888888754 34567888888877775444457766666544
No 297
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=33.05 E-value=1.3e+02 Score=32.78 Aligned_cols=71 Identities=21% Similarity=0.167 Sum_probs=42.8
Q ss_pred CEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHHH
Q 003509 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (814)
Q Consensus 691 kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTILr 770 (814)
.+|+|+.-++. ..++++.|+. -|.++.+-.+ .+++ ..+|.+|.=||=+|-..
T Consensus 2 m~igVLa~qG~-----~~e~~~aL~~-lG~ev~~v~~---------------------~~~L-~~~DgLILPGGfs~~~~ 53 (248)
T PLN02832 2 MAIGVLALQGS-----FNEHIAALRR-LGVEAVEVRK---------------------PEQL-EGVSGLIIPGGESTTMA 53 (248)
T ss_pred cEEEEEeCCCc-----hHHHHHHHHH-CCCcEEEeCC---------------------HHHh-ccCCEEEeCCCHHHHHH
Confidence 37999999987 3334455554 4666543221 1222 36787777777665443
Q ss_pred ----------HHhhhcCCCCcEEEEeCCC
Q 003509 771 ----------ASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 771 ----------AArlf~~s~~PILGINlGr 789 (814)
+.+.+...+.||+||=.|-
T Consensus 54 ~L~~~~gl~~~I~~~v~~g~PvLGiC~Gm 82 (248)
T PLN02832 54 KLAERHNLFPALREFVKSGKPVWGTCAGL 82 (248)
T ss_pred HHHhhcchHHHHHHHHHcCCCEEEEChhH
Confidence 2333334688999998874
No 298
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=31.52 E-value=2.9e+02 Score=29.97 Aligned_cols=79 Identities=16% Similarity=0.140 Sum_probs=48.5
Q ss_pred hHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCC--CcEEEeCcc
Q 003509 279 GLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSK--KPLYLHSKE 356 (814)
Q Consensus 279 Dla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d~~~--~PVLVHCtA 356 (814)
-++..+++|++..+++-....-...+.......+...|+..+.++=. ....+++++.+++..+....+ -|+-+||.-
T Consensus 114 ~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT-~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn 192 (266)
T cd07944 114 LIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDS-FGSMYPEDIKRIISLLRSNLDKDIKLGFHAHN 192 (266)
T ss_pred HHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecC-CCCCCHHHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 35667778999988875543101111112223345678888888744 345678888888887754433 688887765
Q ss_pred CC
Q 003509 357 GV 358 (814)
Q Consensus 357 GK 358 (814)
-.
T Consensus 193 ~~ 194 (266)
T cd07944 193 NL 194 (266)
T ss_pred Cc
Confidence 44
No 299
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=31.42 E-value=1.5e+02 Score=30.52 Aligned_cols=85 Identities=16% Similarity=0.169 Sum_probs=50.4
Q ss_pred EEEEEecCC-c---hHHHH-HHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCch
Q 003509 692 TVLVLKKPG-P---ALMEE-AKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (814)
Q Consensus 692 kVlIV~K~~-~---ea~~~-a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDG 766 (814)
+|+||+... . ..... ...+.+.|.+..+++|.+.++... + ..+. .+.+|+||.....|
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~-~---------------~~~~-L~~~Dvvv~~~~~~ 63 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDD-L---------------TPEN-LKGYDVVVFYNTGG 63 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGC-T---------------SHHC-HCT-SEEEEE-SSC
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCccc-C---------------ChhH-hcCCCEEEEECCCC
Confidence 688898873 1 32333 444555555247999987654221 1 1122 36899999998887
Q ss_pred h-----HHHHHhhhcCCCCcEEEEe-CCCcccC
Q 003509 767 V-----ILHASNLFRGAVPPVISFN-LGSLGFL 793 (814)
Q Consensus 767 T-----ILrAArlf~~s~~PILGIN-lGrLGFL 793 (814)
+ -..+.+.+...+.+++||+ .+...|-
T Consensus 64 ~~l~~~~~~al~~~v~~Ggglv~lH~~~~~~~~ 96 (217)
T PF06283_consen 64 DELTDEQRAALRDYVENGGGLVGLHGAATDSFP 96 (217)
T ss_dssp CGS-HHHHHHHHHHHHTT-EEEEEGGGGGCCHT
T ss_pred CcCCHHHHHHHHHHHHcCCCEEEEcccccccch
Confidence 4 4555666667899999999 5545663
No 300
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=31.34 E-value=72 Score=32.96 Aligned_cols=86 Identities=15% Similarity=0.033 Sum_probs=52.4
Q ss_pred EEEEEecCC-ch-HHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhH-
Q 003509 692 TVLVLKKPG-PA-LMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI- 768 (814)
Q Consensus 692 kVlIV~K~~-~e-a~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTI- 768 (814)
+||++...- +. .....+.+.+.+++ .|+++.+.....+.-... ..+ ...+...+|-+|..+.+...
T Consensus 1 ~~g~~~~~~~~~~~~~~~~~~~~~a~~-~g~~~~~~~~~~~~~~~~---~~i-------~~l~~~~vdgiIi~~~~~~~~ 69 (273)
T cd06309 1 TVGFSQVGAESPWRTAETKSIKDAAEK-RGFDLKFADAQQKQENQI---SAI-------RSFIAQGVDVIILAPVVETGW 69 (273)
T ss_pred CeeeccCCCCCHHHHHHHHHHHHHHHh-cCCEEEEeCCCCCHHHHH---HHH-------HHHHHcCCCEEEEcCCccccc
Confidence 366665533 33 45677888899887 899998754311100000 000 01124579999998887653
Q ss_pred HHHHhhhcCCCCcEEEEeCC
Q 003509 769 LHASNLFRGAVPPVISFNLG 788 (814)
Q Consensus 769 LrAArlf~~s~~PILGINlG 788 (814)
-...+.+...++||+.+|..
T Consensus 70 ~~~i~~~~~~~iPvV~~~~~ 89 (273)
T cd06309 70 DPVLKEAKAAGIPVILVDRG 89 (273)
T ss_pred hHHHHHHHHCCCCEEEEecC
Confidence 23445666778999999964
No 301
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=31.06 E-value=1e+02 Score=33.60 Aligned_cols=69 Identities=17% Similarity=0.055 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhH-----HHHHh----hh
Q 003509 705 EEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI-----LHASN----LF 775 (814)
Q Consensus 705 ~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTI-----LrAAr----lf 775 (814)
.++...++++++ .|..|..-.--.. ....+++.+.+|-||..||.-.+ +++++ ..
T Consensus 20 yi~~~Yv~~l~~-aG~~vvpi~~~~~---------------~~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a 83 (273)
T cd01747 20 YIAASYVKFLES-AGARVVPIWINES---------------EEYYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLA 83 (273)
T ss_pred HHHHHHHHHHHH-CCCeEEEEEeCCc---------------HHHHHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHH
Confidence 356678888887 6776432110000 01122334678999999996332 33332 22
Q ss_pred cCC-----CCcEEEEeCCC
Q 003509 776 RGA-----VPPVISFNLGS 789 (814)
Q Consensus 776 ~~s-----~~PILGINlGr 789 (814)
... ..||+||-+|.
T Consensus 84 ~~~~~~g~~~Pv~GiClG~ 102 (273)
T cd01747 84 LERNDAGDYFPVWGTCLGF 102 (273)
T ss_pred HHhhhcCCCCcEEEEcHHH
Confidence 222 38999999874
No 302
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=30.95 E-value=3.2e+02 Score=30.89 Aligned_cols=82 Identities=13% Similarity=0.042 Sum_probs=51.8
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCC--CcEEEe
Q 003509 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSK--KPLYLH 353 (814)
Q Consensus 276 T~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d~~~--~PVLVH 353 (814)
..+-+++.+++|.++.+++-....-.+.......+.+...|...+.+.=. ....+++++.+.+..+.+..+ -|+-||
T Consensus 116 ~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT-~G~~~P~~v~~~v~~l~~~l~~~i~ig~H 194 (333)
T TIGR03217 116 SEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDS-AGAMLPDDVRDRVRALKAVLKPETQVGFH 194 (333)
T ss_pred HHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccC-CCCCCHHHHHHHHHHHHHhCCCCceEEEE
Confidence 34567788899999999885543101111112233456678888777643 345678888888877754433 678888
Q ss_pred CccCC
Q 003509 354 SKEGV 358 (814)
Q Consensus 354 CtAGK 358 (814)
|..-.
T Consensus 195 ~Hnnl 199 (333)
T TIGR03217 195 AHHNL 199 (333)
T ss_pred eCCCC
Confidence 87655
No 303
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=30.70 E-value=2.1e+02 Score=28.19 Aligned_cols=23 Identities=4% Similarity=-0.023 Sum_probs=15.8
Q ss_pred CCCcEEEeCccCCChHHHHHHHHH
Q 003509 346 SKKPLYLHSKEGVWRTYAMVSRWR 369 (814)
Q Consensus 346 ~~~PVLVHCtAGKDRTGal~aLLl 369 (814)
.+.||+++|..|. ++..++..+.
T Consensus 48 ~~~~vVv~c~~g~-~a~~aa~~L~ 70 (145)
T cd01535 48 AAERYVLTCGSSL-LARFAAADLA 70 (145)
T ss_pred CCCCEEEEeCCCh-HHHHHHHHHH
Confidence 4679999999975 6654444443
No 304
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=30.34 E-value=1.6e+02 Score=31.13 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=32.3
Q ss_pred cCcccEEEEEcCchh-------------------HHHHHhhhcCCCCcEEEEeCCCcc
Q 003509 753 HERVDFVACLGGDGV-------------------ILHASNLFRGAVPPVISFNLGSLG 791 (814)
Q Consensus 753 ~~~vDLVIvLGGDGT-------------------ILrAArlf~~s~~PILGINlGrLG 791 (814)
.++.|.|+.-||-|. ++..++.|...+.||.+|--|-..
T Consensus 83 ~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~i 140 (217)
T PRK11780 83 AEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAM 140 (217)
T ss_pred hhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHH
Confidence 457999999999875 777788888899999999877543
No 305
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=28.98 E-value=2e+02 Score=29.62 Aligned_cols=83 Identities=20% Similarity=0.202 Sum_probs=45.0
Q ss_pred cCCEEEEEecCCc-hHHHHHHHHHHHHhcCCCeEEEEccc-hhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCch
Q 003509 689 TPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPD-VHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (814)
Q Consensus 689 ~~kkVlIV~K~~~-ea~~~a~eLi~~L~e~~Gi~V~ve~~-~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDG 766 (814)
..++|+++..... ......+.+.+.+.+ .|+++..... ..+.+. .....+.+..|.|+ .++|.
T Consensus 130 g~~~i~~l~~~~~~~~~~r~~g~~~~~~~-~g~~~~~~~~~~~~~~~-------------~~~~~~~~~~dai~-~~~d~ 194 (281)
T cd06325 130 DAKTVGVLYNPSEANSVVQVKELKKAAAK-LGIEVVEATVSSSNDVQ-------------QAAQSLAGKVDAIY-VPTDN 194 (281)
T ss_pred CCcEEEEEeCCCCccHHHHHHHHHHHHHh-CCCEEEEEecCCHHHHH-------------HHHHHhcccCCEEE-EcCch
Confidence 6789999975443 333445667777776 6887643110 001010 01112223457655 46787
Q ss_pred hHHHHHhhhcC----CCCcEEEEe
Q 003509 767 VILHASNLFRG----AVPPVISFN 786 (814)
Q Consensus 767 TILrAArlf~~----s~~PILGIN 786 (814)
+.+.+.+.+.. ..+||+|++
T Consensus 195 ~a~~~~~~~~~~~~~~~ipvig~d 218 (281)
T cd06325 195 TVASAMEAVVKVANEAKIPVIASD 218 (281)
T ss_pred hHHhHHHHHHHHHHHcCCCEEEcC
Confidence 75444444332 479999996
No 306
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=28.77 E-value=78 Score=32.26 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=22.4
Q ss_pred cccEEEEEcCchh-----------HHHHHhhhcCCCCcEEEEeCCC
Q 003509 755 RVDFVACLGGDGV-----------ILHASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 755 ~vDLVIvLGGDGT-----------ILrAArlf~~s~~PILGINlGr 789 (814)
++|.||.-||..+ +....+.+...++|||||-.|.
T Consensus 36 ~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G~ 81 (198)
T cd01748 36 SADKLILPGVGAFGDAMANLRERGLIEALKEAIASGKPFLGICLGM 81 (198)
T ss_pred cCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHH
Confidence 5788888554211 2344555555689999997763
No 307
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=28.72 E-value=1.4e+02 Score=37.32 Aligned_cols=36 Identities=19% Similarity=0.139 Sum_probs=25.0
Q ss_pred CcccEEEEEcCchhH-----HHHHhhhc----CCCCcEEEEeCCC
Q 003509 754 ERVDFVACLGGDGVI-----LHASNLFR----GAVPPVISFNLGS 789 (814)
Q Consensus 754 ~~vDLVIvLGGDGTI-----LrAArlf~----~s~~PILGINlGr 789 (814)
.+.|.||+.||-|.- ...+..+. ...+|||||-+|+
T Consensus 52 ~~~D~VVIspGPG~p~~~~~~~i~~~i~~~~~~~~iPvLGIClG~ 96 (742)
T TIGR01823 52 PLFDAIVVGPGPGNPNNAQDMGIISELWELANLDEVPVLGICLGF 96 (742)
T ss_pred cCCCEEEECCCCCCccchhhhHHHHHHHHhcccCCCcEEEEchhh
Confidence 468999999999984 22222222 2369999999984
No 308
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=28.66 E-value=1.1e+02 Score=31.44 Aligned_cols=87 Identities=14% Similarity=-0.005 Sum_probs=48.8
Q ss_pred cCCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhH
Q 003509 689 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 768 (814)
Q Consensus 689 ~~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTI 768 (814)
...+|+++.-.............+.+.+ .|+++..-..... . . .....+....+|.|++-|||=..
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~-lG~~~~~~~~~~~--~---~--------~~~~~~~l~~ad~I~~~GG~~~~ 93 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFER-LGVEVVHLLLIDT--A---N--------DPDVVARLLEADGIFVGGGNQLR 93 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHH-cCCceEEEeccCC--C---C--------CHHHHHHHhhCCEEEEcCCcHHH
Confidence 4668888876654333344556666665 4665532111100 0 0 01122335689999999999543
Q ss_pred H----------HHHhhhcCCCCcEEEEeCCC
Q 003509 769 L----------HASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 769 L----------rAArlf~~s~~PILGINlGr 789 (814)
| .+.+.....++|++|++-|.
T Consensus 94 ~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA 124 (210)
T cd03129 94 LLSVLRETPLLDAILKRVARGVVIGGTSAGA 124 (210)
T ss_pred HHHHHHhCChHHHHHHHHHcCCeEEEcCHHH
Confidence 3 33333323589999998875
No 309
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=27.83 E-value=99 Score=34.90 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=24.3
Q ss_pred cccEEEEEcCchhHHHHHhhhc-------------------CCCCcEEEEeC
Q 003509 755 RVDFVACLGGDGVILHASNLFR-------------------GAVPPVISFNL 787 (814)
Q Consensus 755 ~vDLVIvLGGDGTILrAArlf~-------------------~s~~PILGINl 787 (814)
++|+||.||| |..+-+++.++ ...+|++.|.+
T Consensus 81 ~~D~IIaiGG-GS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPT 131 (347)
T cd08184 81 LPCAIVGIGG-GSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPT 131 (347)
T ss_pred CCCEEEEeCC-cHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeC
Confidence 7999999999 77777776653 12468999975
No 310
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=27.53 E-value=38 Score=33.03 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=24.7
Q ss_pred cccccCcccEEEEEcCchhHHHHHhhhcCCCCcEEEE
Q 003509 749 TSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISF 785 (814)
Q Consensus 749 ~~~l~~~vDLVIvLGGDGTILrAArlf~~s~~PILGI 785 (814)
..++...+|+|||=||=||+.-++. .++|.+-|
T Consensus 66 m~~~m~~aDlvIs~aG~~Ti~E~l~----~g~P~I~i 98 (167)
T PF04101_consen 66 MAELMAAADLVISHAGAGTIAEALA----LGKPAIVI 98 (167)
T ss_dssp HHHHHHHHSEEEECS-CHHHHHHHH----CT--EEEE
T ss_pred HHHHHHHcCEEEeCCCccHHHHHHH----cCCCeecc
Confidence 5566788999999999999988877 46777766
No 311
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=27.30 E-value=81 Score=35.64 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=19.7
Q ss_pred CCCcEEEeCccCCChHHHHHHHHHHhCCCC
Q 003509 346 SKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 346 ~~~PVLVHCtAGKDRTGal~aLLl~l~GV~ 375 (814)
.+.+++++|..|. |+..++..++. .|.+
T Consensus 313 ~~~~IvvyC~~G~-rS~~Aa~~L~~-~G~~ 340 (355)
T PRK05597 313 AGDEVVVYCAAGV-RSAQAVAILER-AGYT 340 (355)
T ss_pred CCCeEEEEcCCCH-HHHHHHHHHHH-cCCC
Confidence 5678999999997 87755554433 4654
No 312
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=27.14 E-value=70 Score=25.47 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=28.0
Q ss_pred cCcccEEEEEcCchhHH---------HHHhhhcCCCCcEEEEeCCCc
Q 003509 753 HERVDFVACLGGDGVIL---------HASNLFRGAVPPVISFNLGSL 790 (814)
Q Consensus 753 ~~~vDLVIvLGGDGTIL---------rAArlf~~s~~PILGINlGrL 790 (814)
....|.+|..||.++.. +....+.....||+|+..|..
T Consensus 44 ~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~ 90 (92)
T cd03128 44 LDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQ 90 (92)
T ss_pred cccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccc
Confidence 46789999999988873 334444445789999998854
No 313
>PRK00758 GMP synthase subunit A; Validated
Probab=26.82 E-value=69 Score=32.29 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=21.7
Q ss_pred cEEEEEcCchhHHH---HHhhhcCCCCcEEEEeCCC
Q 003509 757 DFVACLGGDGVILH---ASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 757 DLVIvLGGDGTILr---AArlf~~s~~PILGINlGr 789 (814)
|.+|.-||.. +-. ..+.+...++|||||-+|.
T Consensus 43 dgivi~Gg~~-~~~~~~~~~~l~~~~~PilGIC~G~ 77 (184)
T PRK00758 43 DGLILSGGPD-IERAGNCPEYLKELDVPILGICLGH 77 (184)
T ss_pred CEEEECCCCC-hhhccccHHHHHhCCCCEEEEeHHH
Confidence 8888888873 311 2223335689999999984
No 314
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=26.70 E-value=2.8e+02 Score=29.03 Aligned_cols=35 Identities=20% Similarity=0.083 Sum_probs=23.3
Q ss_pred cccEEEEEcCc----------hhHHHHHhhhcCCCCcEEEEeCCC
Q 003509 755 RVDFVACLGGD----------GVILHASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 755 ~vDLVIvLGGD----------GTILrAArlf~~s~~PILGINlGr 789 (814)
..|.+|+.||= +........+....+|||||=+|+
T Consensus 45 ~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~ 89 (198)
T COG0518 45 SPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKPVLGICLGH 89 (198)
T ss_pred CCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCCCEEEEChhH
Confidence 44999999995 333444444444455799999884
No 315
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=26.51 E-value=4.6e+02 Score=29.99 Aligned_cols=78 Identities=6% Similarity=0.055 Sum_probs=49.0
Q ss_pred HHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCC
Q 003509 280 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGV 358 (814)
Q Consensus 280 la~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d~~~~PVLVHCtAGK 358 (814)
++..++.|++..++.-........+.......+...|+..+.++=. ....++.++.+++..+.+..+-|+-+||.--.
T Consensus 122 v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT-~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~ 199 (378)
T PRK11858 122 VEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFCDT-VGILDPFTMYELVKELVEAVDIPIEVHCHNDF 199 (378)
T ss_pred HHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEecc-CCCCCHHHHHHHHHHHHHhcCCeEEEEecCCc
Confidence 4567778999888753222111111112233456679999888844 34567888888887775544678888887655
No 316
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=25.89 E-value=4.2e+02 Score=29.97 Aligned_cols=82 Identities=12% Similarity=0.033 Sum_probs=50.6
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCC--CCcEEEe
Q 003509 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSS--KKPLYLH 353 (814)
Q Consensus 276 T~eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d~~--~~PVLVH 353 (814)
..+-+++.+++|.++.+++-....-.+.+.......+...|...+.+.=. .....++++.+++..+.+.. +-|+=||
T Consensus 117 ~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT-~G~~~P~~v~~~v~~l~~~l~~~i~ig~H 195 (337)
T PRK08195 117 SEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDS-AGALLPEDVRDRVRALRAALKPDTQVGFH 195 (337)
T ss_pred HHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCC-CCCCCHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 34557778889999999985543111111112233456678888777533 34567888888888776443 5677777
Q ss_pred CccCC
Q 003509 354 SKEGV 358 (814)
Q Consensus 354 CtAGK 358 (814)
|.--.
T Consensus 196 ~Hnnl 200 (337)
T PRK08195 196 GHNNL 200 (337)
T ss_pred eCCCc
Confidence 76544
No 317
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=25.69 E-value=1.8e+02 Score=30.00 Aligned_cols=85 Identities=9% Similarity=-0.067 Sum_probs=49.0
Q ss_pred EEEEEecCCc-h-HHHHHHHHHHHHhcCCCeEEEEccc-h-hhHhhcCCCCccceeeeccCcc-cccCcccEEEEEcCch
Q 003509 692 TVLVLKKPGP-A-LMEEAKEVASFLYHQEKMNILVEPD-V-HDIFARIPGFGFVQTFYLQDTS-DLHERVDFVACLGGDG 766 (814)
Q Consensus 692 kVlIV~K~~~-e-a~~~a~eLi~~L~e~~Gi~V~ve~~-~-a~~l~~~p~~~~v~~~~~~~~~-~l~~~vDLVIvLGGDG 766 (814)
+|+|+.+... . .......+.+.+.+ .|+++.+... . .+.-.. . .-.+ .+...+|-+|+.+.+.
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~~~~~~~~~------~-----~~i~~l~~~~vdgiIi~~~~~ 68 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKK-LGVSVDIQAAPSEGDQQGQ------L-----SIAENMINKGYKGLLFSPISD 68 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHH-hCCeEEEEccCCCCCHHHH------H-----HHHHHHHHhCCCEEEECCCCh
Confidence 4777776443 3 34456677788877 7988876321 0 000000 0 0011 1234789998888776
Q ss_pred hH-HHHHhhhcCCCCcEEEEeCC
Q 003509 767 VI-LHASNLFRGAVPPVISFNLG 788 (814)
Q Consensus 767 TI-LrAArlf~~s~~PILGINlG 788 (814)
+- -.....+...++||+.++..
T Consensus 69 ~~~~~~~~~~~~~~iPvV~~~~~ 91 (275)
T cd06320 69 VNLVPAVERAKKKGIPVVNVNDK 91 (275)
T ss_pred HHhHHHHHHHHHCCCeEEEECCC
Confidence 53 34445666779999999753
No 318
>PTZ00287 6-phosphofructokinase; Provisional
Probab=25.36 E-value=64 Score=42.73 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=26.3
Q ss_pred CcccEEEEEcCchhHHHHHhhhc---CCCCc--EEEEe
Q 003509 754 ERVDFVACLGGDGVILHASNLFR---GAVPP--VISFN 786 (814)
Q Consensus 754 ~~vDLVIvLGGDGTILrAArlf~---~s~~P--ILGIN 786 (814)
-++|.+|+||||||+-.|..+.. ...+| |+||-
T Consensus 270 l~Id~LViIGGddS~~~A~~Lae~~~~~gi~i~VIGIP 307 (1419)
T PTZ00287 270 LKLNGLVIIGGDGSNSNAALISEYFAERQIPISIIGIP 307 (1419)
T ss_pred cCCCEEEEECChhHHHHHHHHHHHHHhcCCCeeEEEEe
Confidence 37999999999999988877643 35677 68984
No 319
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=24.61 E-value=2.8e+02 Score=28.81 Aligned_cols=54 Identities=24% Similarity=0.272 Sum_probs=34.4
Q ss_pred ccCcccEEEEEcCc---h-hHHHHHhhhcCCCCcEEEEeCCC---------cccCCCCCcccHHHHHhhhh
Q 003509 752 LHERVDFVACLGGD---G-VILHASNLFRGAVPPVISFNLGS---------LGFLTSHPVSSYLNSLCFLS 809 (814)
Q Consensus 752 l~~~vDLVIvLGGD---G-TILrAArlf~~s~~PILGINlGr---------LGFLTe~~~dei~eaLe~L~ 809 (814)
+...+|++|....- | |++-|. ..++||++.+.|. -||+.+-+-+++.+++..+.
T Consensus 275 ~~~~ad~~l~~s~~e~~~~~~~Ea~----~~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~i~~l~ 341 (374)
T cd03817 275 YYKAADLFVFASTTETQGLVLLEAM----AAGLPVVAVDAPGLPDLVADGENGFLFPPGDEALAEALLRLL 341 (374)
T ss_pred HHHHcCEEEecccccCcChHHHHHH----HcCCcEEEeCCCChhhheecCceeEEeCCCCHHHHHHHHHHH
Confidence 34578998866533 2 333332 3489999988764 47777655447777777765
No 320
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.42 E-value=2.2e+02 Score=29.17 Aligned_cols=83 Identities=11% Similarity=0.071 Sum_probs=50.1
Q ss_pred EEEEEecCC-ch-HHHHHHHHHHHHhcCCCeEEEEccc-----hhhHhhcCCCCccceeeeccCcccccCcccEEEEEcC
Q 003509 692 TVLVLKKPG-PA-LMEEAKEVASFLYHQEKMNILVEPD-----VHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGG 764 (814)
Q Consensus 692 kVlIV~K~~-~e-a~~~a~eLi~~L~e~~Gi~V~ve~~-----~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGG 764 (814)
+|+|+...- +. ....+..+.+.+.+ .|+++.+... ...... .+ ..-+...+|-||..+.
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~------~i-------~~l~~~~vdgvii~~~ 66 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKE-LGVKVTFQGPASETDVAGQVN------LL-------ENAIARGPDAILLAPT 66 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHH-cCCEEEEecCccCCCHHHHHH------HH-------HHHHHhCCCEEEEcCC
Confidence 477776443 33 45667788888887 7999887431 111110 00 0012347999999888
Q ss_pred chhHHH-HHhhhcCCCCcEEEEeCC
Q 003509 765 DGVILH-ASNLFRGAVPPVISFNLG 788 (814)
Q Consensus 765 DGTILr-AArlf~~s~~PILGINlG 788 (814)
+...+. ....+...++|++.++..
T Consensus 67 ~~~~~~~~l~~~~~~~ipvV~~~~~ 91 (273)
T cd06310 67 DAKALVPPLKEAKDAGIPVVLIDSG 91 (273)
T ss_pred ChhhhHHHHHHHHHCCCCEEEecCC
Confidence 765433 345555678999999753
No 321
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=24.31 E-value=1.3e+02 Score=30.73 Aligned_cols=86 Identities=13% Similarity=0.035 Sum_probs=50.1
Q ss_pred EEEEEecCC-ch-HHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhH-
Q 003509 692 TVLVLKKPG-PA-LMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI- 768 (814)
Q Consensus 692 kVlIV~K~~-~e-a~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTI- 768 (814)
+|+++.... .. .......+.+.+++ .|+++.+.....+.-.. ...+ ..-+...+|-+|+..+|.+.
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~~~~~~~---~~~l-------~~~~~~~vdgii~~~~~~~~~ 69 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEA-LGGDLRVYDAGGDDAKQ---ADQI-------DQAIAQKVDAIIIQHGRAEVL 69 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHH-cCCEEEEECCCCCHHHH---HHHH-------HHHHHcCCCEEEEecCChhhh
Confidence 366665433 33 34566778888877 79998774321110000 0000 01123579999999887653
Q ss_pred HHHHhhhcCCCCcEEEEeCC
Q 003509 769 LHASNLFRGAVPPVISFNLG 788 (814)
Q Consensus 769 LrAArlf~~s~~PILGINlG 788 (814)
-...+.+...++||+.++..
T Consensus 70 ~~~i~~~~~~~ipvV~~~~~ 89 (273)
T cd06305 70 KPWVKRALDAGIPVVAFDVD 89 (273)
T ss_pred HHHHHHHHHcCCCEEEecCC
Confidence 34456666778999999863
No 322
>PRK09389 (R)-citramalate synthase; Provisional
Probab=24.25 E-value=4.5e+02 Score=31.27 Aligned_cols=94 Identities=11% Similarity=-0.002 Sum_probs=56.0
Q ss_pred HHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCCC
Q 003509 280 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVW 359 (814)
Q Consensus 280 la~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d~~~~PVLVHCtAGKD 359 (814)
++.+++.|++..+++-......+.+.......+...|...+.+|=. ....++.++..+++.+.+..+-|+=+||.--.
T Consensus 120 v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT-vG~~~P~~~~~lv~~l~~~~~v~l~~H~HND~- 197 (488)
T PRK09389 120 VEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICFCDT-VGILTPEKTYELFKRLSELVKGPVSIHCHNDF- 197 (488)
T ss_pred HHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEecC-CCCcCHHHHHHHHHHHHhhcCCeEEEEecCCc-
Confidence 5667788998888774332111112112223456689999999855 34566777877777775555578888888655
Q ss_pred hHHHHHHHHHHhCCCC
Q 003509 360 RTYAMVSRWRQYMARC 375 (814)
Q Consensus 360 RTGal~aLLl~l~GV~ 375 (814)
-.++.-++....+|++
T Consensus 198 GlAvANalaAv~aGa~ 213 (488)
T PRK09389 198 GLAVANTLAALAAGAD 213 (488)
T ss_pred cHHHHHHHHHHHcCCC
Confidence 2333333333345664
No 323
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=24.02 E-value=1.1e+02 Score=36.61 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=24.8
Q ss_pred cccEEEEEcCchhHH------HHHhhhcCCCCcEEEEeCCC
Q 003509 755 RVDFVACLGGDGVIL------HASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 755 ~vDLVIvLGGDGTIL------rAArlf~~s~~PILGINlGr 789 (814)
+.|.||.-||.|..- ...+.+ ...+|||||-+|+
T Consensus 44 ~~d~vIlsgGP~~p~~~~~~~~li~~~-~~~~PvLGIClG~ 83 (534)
T PRK14607 44 NPSHIVISPGPGRPEEAGISVEVIRHF-SGKVPILGVCLGH 83 (534)
T ss_pred CCCEEEECCCCCChhhCCccHHHHHHh-hcCCCEEEEcHHH
Confidence 578999999998743 333333 3579999999874
No 324
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=23.90 E-value=3e+02 Score=28.61 Aligned_cols=84 Identities=13% Similarity=0.022 Sum_probs=48.4
Q ss_pred ccCCEEEEEecCCchHHHHHHHHHHHHhcCC-CeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCch
Q 003509 688 TTPRTVLVLKKPGPALMEEAKEVASFLYHQE-KMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (814)
Q Consensus 688 ~~~kkVlIV~K~~~ea~~~a~eLi~~L~e~~-Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDG 766 (814)
+...+|+++.-......+....+...+.. - |+++..-.... ..+..+....+|.|+.=|||
T Consensus 29 ~~~~~i~~IptAs~~~~~~~~~~~~a~~~-l~G~~~~~~~~~~----------------~~~~~~~l~~ad~I~l~GG~- 90 (212)
T cd03146 29 KARPKVLFVPTASGDRDEYTARFYAAFES-LRGVEVSHLHLFD----------------TEDPLDALLEADVIYVGGGN- 90 (212)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHhh-ccCcEEEEEeccC----------------cccHHHHHhcCCEEEECCch-
Confidence 34578998877665444555666666665 5 77665322100 01112234578998887764
Q ss_pred hHHHHHhh------------hcCCCCcEEEEeCCCc
Q 003509 767 VILHASNL------------FRGAVPPVISFNLGSL 790 (814)
Q Consensus 767 TILrAArl------------f~~s~~PILGINlGrL 790 (814)
..+..+. ....+.|++|+..|-.
T Consensus 91 -~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa~ 125 (212)
T cd03146 91 -TFNLLAQWREHGLDAILKAALERGVVYIGWSAGSN 125 (212)
T ss_pred -HHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhHH
Confidence 3333222 2235799999998853
No 325
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=23.73 E-value=4e+02 Score=29.48 Aligned_cols=99 Identities=15% Similarity=0.112 Sum_probs=56.8
Q ss_pred ccccCCEEEEEecCC--c--hHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccC------c------
Q 003509 686 WKTTPRTVLVLKKPG--P--ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQD------T------ 749 (814)
Q Consensus 686 w~~~~kkVlIV~K~~--~--ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~------~------ 749 (814)
|.+++++|+|+.-.. + -+...++.|.+..-+ ..+.+++.+.....+...|..+.+..+.... .
T Consensus 1 ~~~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~-a~I~~l~~~~~~~l~~~~P~id~vi~~~~~~~~~~~~~~~~~~l 79 (352)
T PRK10422 1 MDKPFRRILIIKMRFHGDMLLTTPVISSLKKNYPD-AKIDVLLYQDTIPILSENPEINALYGIKNKKAGASEKIKNFFSL 79 (352)
T ss_pred CCCCCceEEEEEecccCceeeHHHHHHHHHHHCCC-CeEEEEeccChHHHhccCCCceEEEEeccccccHHHHHHHHHHH
Confidence 567789999997443 4 355666677766654 5778888887777776555544333221110 0
Q ss_pred -ccc-cCcccEEEEEcCchhHHHHHhhhcC-CCCcEEEEeCC
Q 003509 750 -SDL-HERVDFVACLGGDGVILHASNLFRG-AVPPVISFNLG 788 (814)
Q Consensus 750 -~~l-~~~vDLVIvLGGDGTILrAArlf~~-s~~PILGINlG 788 (814)
..+ ..+.|++|.+-+ ++ +++-+..- ..+..+|++.+
T Consensus 80 ~~~lr~~~yD~vidl~~--~~-~s~ll~~l~~a~~rig~~~~ 118 (352)
T PRK10422 80 IKVLRANKYDLIVNLTD--QW-MVALLVRLLNARVKISQDYH 118 (352)
T ss_pred HHHHhhCCCCEEEEccc--ch-HHHHHHHHhCCCeEEeeccc
Confidence 011 258999999964 33 22222222 23456787654
No 326
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=23.61 E-value=62 Score=34.04 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=23.2
Q ss_pred hhHHHHHhhhcC-CCCcEEEEeCCCcccCCCC
Q 003509 766 GVILHASNLFRG-AVPPVISFNLGSLGFLTSH 796 (814)
Q Consensus 766 GTILrAArlf~~-s~~PILGINlGrLGFLTe~ 796 (814)
=++|.+.+.+.. ..+|++++|||.+|.++-+
T Consensus 165 ~~ll~~~~~~~~~~~~p~i~~~MG~~G~~SRi 196 (228)
T TIGR01093 165 LTLLEITNKVDEHADVPLITMSMGDRGKISRV 196 (228)
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCChhHhh
Confidence 366776666643 4789999999999987643
No 327
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=23.37 E-value=5.4e+02 Score=29.23 Aligned_cols=78 Identities=8% Similarity=0.101 Sum_probs=47.4
Q ss_pred HHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCC
Q 003509 280 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGV 358 (814)
Q Consensus 280 la~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d~~~~PVLVHCtAGK 358 (814)
++..++.|++..+++-........+.......+...|+..+.++=. ....+++.+..++..+.+..+-|+=+||.--.
T Consensus 119 i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT-~G~~~P~~v~~lv~~l~~~~~v~l~~H~HNd~ 196 (365)
T TIGR02660 119 VSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFADT-VGILDPFSTYELVRALRQAVDLPLEMHAHNDL 196 (365)
T ss_pred HHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEccc-CCCCCHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 5556778998777763332111111112223455678998888754 34567888888887775544567777776544
No 328
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=23.12 E-value=6e+02 Score=28.87 Aligned_cols=80 Identities=14% Similarity=0.159 Sum_probs=49.6
Q ss_pred hhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccC
Q 003509 278 EGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEG 357 (814)
Q Consensus 278 eDla~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d~~~~PVLVHCtAG 357 (814)
+-++..++.|++..+++-........+.......+...|+..+.++=. ....+++++..+++.+.+..+-|+-|||.--
T Consensus 116 ~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT-~G~~~P~~v~~li~~l~~~~~~~l~~H~Hnd 194 (363)
T TIGR02090 116 EAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIADT-VGVLTPQKMEELIKKLKENVKLPISVHCHND 194 (363)
T ss_pred HHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeCC-CCccCHHHHHHHHHHHhcccCceEEEEecCC
Confidence 335567788999888874332111111112223456678888888754 3456788888888887655456777777655
Q ss_pred C
Q 003509 358 V 358 (814)
Q Consensus 358 K 358 (814)
.
T Consensus 195 ~ 195 (363)
T TIGR02090 195 F 195 (363)
T ss_pred C
Confidence 4
No 329
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=23.11 E-value=96 Score=34.80 Aligned_cols=59 Identities=24% Similarity=0.133 Sum_probs=39.9
Q ss_pred CcccEEEEEcCchhHHHHHhhhcCCCCcEEEEeCC-CcccCCCCCccc-HHHHHhhhhccc
Q 003509 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNLG-SLGFLTSHPVSS-YLNSLCFLSLFH 812 (814)
Q Consensus 754 ~~vDLVIvLGGDGTILrAArlf~~s~~PILGINlG-rLGFLTe~~~de-i~eaLe~L~~~~ 812 (814)
.+.|+||++|--.|.|-+|-......+||.-|.-| |=|-+++=.+|| .+..+.+++-.|
T Consensus 66 ~~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaGlRs~d~~~g~~de~~R~~i~~la~lh 126 (346)
T PF02350_consen 66 EKPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAGLRSGDRTEGMPDEINRHAIDKLAHLH 126 (346)
T ss_dssp HT-SEEEEETTSHHHHHHHHHHHHTT-EEEEES-----S-TTSSTTHHHHHHHHHHH-SEE
T ss_pred cCCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCCCCccccCCCCchhhhhhhhhhhhhhh
Confidence 47899999999999999998888889999999999 455566334554 566667766554
No 330
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=23.10 E-value=5.3e+02 Score=27.72 Aligned_cols=78 Identities=13% Similarity=0.185 Sum_probs=45.4
Q ss_pred HHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCC---CcEEEeCcc
Q 003509 280 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSK---KPLYLHSKE 356 (814)
Q Consensus 280 la~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d~~~---~PVLVHCtA 356 (814)
++..+++|++..+++-....-.+.+.......+...|+..+.++=. ....+++++..+++.+.+..+ -|+-+||.-
T Consensus 120 i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT-~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn 198 (268)
T cd07940 120 VEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINIPDT-VGYLTPEEFGELIKKLKENVPNIKVPISVHCHN 198 (268)
T ss_pred HHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCC-CCCCCHHHHHHHHHHHHHhCCCCceeEEEEecC
Confidence 4456778998777763332001111111223345678888777644 345678888888877765433 577777765
Q ss_pred CC
Q 003509 357 GV 358 (814)
Q Consensus 357 GK 358 (814)
-.
T Consensus 199 ~~ 200 (268)
T cd07940 199 DL 200 (268)
T ss_pred Cc
Confidence 55
No 331
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=23.02 E-value=2e+02 Score=30.34 Aligned_cols=87 Identities=11% Similarity=0.050 Sum_probs=51.2
Q ss_pred cCCEEEEEecCCc-h-HHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCccc-ccCcccEEEEEcCc
Q 003509 689 TPRTVLVLKKPGP-A-LMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGD 765 (814)
Q Consensus 689 ~~kkVlIV~K~~~-e-a~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~-l~~~vDLVIvLGGD 765 (814)
..++|+++..... . ..+.+..+.+.+++ .|+++.+.....+.-.. . ...+. ....+|.+|..+.|
T Consensus 25 ~~~~I~vi~~~~~~~f~~~~~~~i~~~~~~-~G~~~~~~~~~~d~~~~------~-----~~~~~l~~~~~dgiii~~~~ 92 (295)
T PRK10653 25 AKDTIALVVSTLNNPFFVSLKDGAQKEADK-LGYNLVVLDSQNNPAKE------L-----ANVQDLTVRGTKILLINPTD 92 (295)
T ss_pred cCCeEEEEecCCCChHHHHHHHHHHHHHHH-cCCeEEEecCCCCHHHH------H-----HHHHHHHHcCCCEEEEcCCC
Confidence 5678998875433 3 45666778888877 79998774321110000 0 00111 23468977766655
Q ss_pred hhH-HHHHhhhcCCCCcEEEEeC
Q 003509 766 GVI-LHASNLFRGAVPPVISFNL 787 (814)
Q Consensus 766 GTI-LrAArlf~~s~~PILGINl 787 (814)
-+. ......+...++|++.++.
T Consensus 93 ~~~~~~~l~~~~~~~ipvV~~~~ 115 (295)
T PRK10653 93 SDAVGNAVKMANQANIPVITLDR 115 (295)
T ss_pred hHHHHHHHHHHHHCCCCEEEEcc
Confidence 333 3455666667899999985
No 332
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.64 E-value=3.9e+02 Score=27.43 Aligned_cols=49 Identities=14% Similarity=0.063 Sum_probs=34.0
Q ss_pred cCcccEEEEEcCchhH-HHHHhhhcCCCCcEEEEeCCCcccCCCCCcccH
Q 003509 753 HERVDFVACLGGDGVI-LHASNLFRGAVPPVISFNLGSLGFLTSHPVSSY 801 (814)
Q Consensus 753 ~~~vDLVIvLGGDGTI-LrAArlf~~s~~PILGINlGrLGFLTe~~~dei 801 (814)
...+|-+|+.+.|... -...+.+...++||+.|+....+..+.+..++.
T Consensus 55 ~~~~dgiIi~~~~~~~~~~~i~~~~~~~ipvv~~~~~~~~~~~~V~~d~~ 104 (271)
T cd06321 55 AAKVDLILLNAVDSKGIAPAVKRAQAAGIVVVAVDVAAEGADATVTTDNV 104 (271)
T ss_pred HhCCCEEEEeCCChhHhHHHHHHHHHCCCeEEEecCCCCCccceeeechH
Confidence 3578999998888652 334455666789999998765565555666654
No 333
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=22.52 E-value=2.3e+02 Score=29.81 Aligned_cols=72 Identities=25% Similarity=0.188 Sum_probs=42.6
Q ss_pred EEEEEecCCchH-HHHHHHHHHHHh-cCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCch---
Q 003509 692 TVLVLKKPGPAL-MEEAKEVASFLY-HQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG--- 766 (814)
Q Consensus 692 kVlIV~K~~~ea-~~~a~eLi~~L~-e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDG--- 766 (814)
+|+|+.-++..+ .+. ...|+ . .|+++..-.. ...+ .+.+|.+|.-||-+
T Consensus 2 ~v~Vl~~~G~n~~~d~----~~a~~~~-~G~~~~~v~~--------------------~~~~-l~~~D~lvipGG~~~~d 55 (219)
T PRK03619 2 KVAVIVFPGSNCDRDM----ARALRDL-LGAEPEYVWH--------------------KETD-LDGVDAVVLPGGFSYGD 55 (219)
T ss_pred EEEEEecCCcChHHHH----HHHHHhc-CCCeEEEEec--------------------CcCC-CCCCCEEEECCCCchhh
Confidence 789999888642 332 33443 3 5766543111 0011 24679999989842
Q ss_pred -----------hHHHHHhhhcCCCCcEEEEeCCC
Q 003509 767 -----------VILHASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 767 -----------TILrAArlf~~s~~PILGINlGr 789 (814)
.++...+.+...+.||+||-.|.
T Consensus 56 ~l~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~ 89 (219)
T PRK03619 56 YLRCGAIAAFSPIMKAVKEFAEKGKPVLGICNGF 89 (219)
T ss_pred hhccchhhhchHHHHHHHHHHHCCCEEEEECHHH
Confidence 22333555666799999998763
No 334
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=22.43 E-value=4.6e+02 Score=28.13 Aligned_cols=110 Identities=16% Similarity=0.135 Sum_probs=63.2
Q ss_pred cceeeecC--CcccccCCchhHHhhcccccCCEEEEEecCCc-h-HHHHHHHHHHHHhcCCCeEEEEccchh--hHhhcC
Q 003509 662 CNREKVTE--SSLAFTHPSTQQQMLMWKTTPRTVLVLKKPGP-A-LMEEAKEVASFLYHQEKMNILVEPDVH--DIFARI 735 (814)
Q Consensus 662 c~r~~~~~--s~~~~~~ps~~~~~l~w~~~~kkVlIV~K~~~-e-a~~~a~eLi~~L~e~~Gi~V~ve~~~a--~~l~~~ 735 (814)
=+|++|.. ..+-+. |+.....|. ....++|+++..... . -......+.+.+.+ +|+.+++..... +....
T Consensus 36 ~tr~~V~~~a~elgY~-p~~~a~~l~-~~~~~~Igvv~~~~~~~~~~~i~~gi~~~a~~-~g~~~~~~~~~~~~~~~~~- 111 (342)
T PRK10014 36 ATGERVNQAIEELGFV-RNRQASALR-GGQSGVIGLIVRDLSAPFYAELTAGLTEALEA-QGRMVFLLQGGKDGEQLAQ- 111 (342)
T ss_pred HHHHHHHHHHHHhCCC-cCHHHHhhc-cCCCCEEEEEeCCCccchHHHHHHHHHHHHHH-cCCEEEEEeCCCCHHHHHH-
Confidence 34555543 245553 454444554 344578998885443 3 34455677788877 788877632210 00000
Q ss_pred CCCccceeeeccCcc-cccCcccEEEEEcCchhHHHHHhhhcCCCCcEEEEeC
Q 003509 736 PGFGFVQTFYLQDTS-DLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNL 787 (814)
Q Consensus 736 p~~~~v~~~~~~~~~-~l~~~vDLVIvLGGDGTILrAArlf~~s~~PILGINl 787 (814)
... -+..++|-||..+.+.........+....+|++-++-
T Consensus 112 ------------~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~~~~ 152 (342)
T PRK10014 112 ------------RFSTLLNQGVDGVVIAGAAGSSDDLREMAEEKGIPVVFASR 152 (342)
T ss_pred ------------HHHHHHhCCCCEEEEeCCCCCcHHHHHHHhhcCCCEEEEec
Confidence 011 1235789999998875444455666677899998874
No 335
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=22.09 E-value=86 Score=33.43 Aligned_cols=35 Identities=14% Similarity=0.042 Sum_probs=22.9
Q ss_pred cEEEEEcCchhH-H---HHHhhhcCCCCcEEE--EeCCCcc
Q 003509 757 DFVACLGGDGVI-L---HASNLFRGAVPPVIS--FNLGSLG 791 (814)
Q Consensus 757 DLVIvLGGDGTI-L---rAArlf~~s~~PILG--INlGrLG 791 (814)
.-||+|.|||++ + .........++||+= +|-|.+|
T Consensus 81 r~VV~i~GDG~~~~m~~~eL~ta~~~~~pv~~vVlNN~~yg 121 (235)
T cd03376 81 ITVVAFAGDGGTADIGFQALSGAAERGHDILYICYDNEAYM 121 (235)
T ss_pred CeEEEEEcCchHHhhHHHHHHHHHHcCCCeEEEEECCcccc
Confidence 359999999995 2 333333456677664 4767777
No 336
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=22.08 E-value=2.4e+02 Score=30.67 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=27.6
Q ss_pred cccccCcccEEEEEcCchhHHHHHhhhcCCCCcEEEEeC
Q 003509 749 TSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNL 787 (814)
Q Consensus 749 ~~~l~~~vDLVIvLGGDGTILrAArlf~~s~~PILGINl 787 (814)
..++...+|++|+=||-+|+.-++. .++|++.|..
T Consensus 241 ~~~~l~~ad~vI~~~G~~t~~Ea~~----~g~P~l~ip~ 275 (321)
T TIGR00661 241 FKELIKNAELVITHGGFSLISEALS----LGKPLIVIPD 275 (321)
T ss_pred HHHHHHhCCEEEECCChHHHHHHHH----cCCCEEEEcC
Confidence 4445578999999999999776554 5789998876
No 337
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=22.07 E-value=74 Score=33.80 Aligned_cols=36 Identities=19% Similarity=0.149 Sum_probs=28.3
Q ss_pred CcccEEEEEcCchh---------------HHHHHhhhcCCCCcEEEEeCCC
Q 003509 754 ERVDFVACLGGDGV---------------ILHASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 754 ~~vDLVIvLGGDGT---------------ILrAArlf~~s~~PILGINlGr 789 (814)
+++|.||.-||-.. ++...+.+...++||+||-.|-
T Consensus 42 ~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~g~pvlGIC~G~ 92 (238)
T cd01740 42 DDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAERGGLVLGICNGF 92 (238)
T ss_pred hhCCEEEECCCCCcccccccccccccChhHHHHHHHHHhCCCeEEEECcHH
Confidence 57899999999431 6667777878899999998763
No 338
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=22.03 E-value=5.3e+02 Score=23.53 Aligned_cols=80 Identities=15% Similarity=0.114 Sum_probs=46.6
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchh--
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV-- 767 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGT-- 767 (814)
-++|.+++.... ...+..+...|.. .|..+....+....... ... ...-|++|.+--.|.
T Consensus 13 ~~~i~i~g~g~s--~~~a~~~~~~l~~-~~~~~~~~~~~~~~~~~--------------~~~-~~~~~~~i~iS~~g~~~ 74 (139)
T cd05013 13 ARRIYIFGVGSS--GLVAEYLAYKLLR-LGKPVVLLSDPHLQLMS--------------AAN-LTPGDVVIAISFSGETK 74 (139)
T ss_pred CCEEEEEEcCch--HHHHHHHHHHHHH-cCCceEEecCHHHHHHH--------------HHc-CCCCCEEEEEeCCCCCH
Confidence 368889887764 3455566666665 45555544332221110 001 122355555554443
Q ss_pred -HHHHHhhhcCCCCcEEEEeC
Q 003509 768 -ILHASNLFRGAVPPVISFNL 787 (814)
Q Consensus 768 -ILrAArlf~~s~~PILGINl 787 (814)
++.+++.+...++++++|-.
T Consensus 75 ~~~~~~~~a~~~g~~iv~iT~ 95 (139)
T cd05013 75 ETVEAAEIAKERGAKVIAITD 95 (139)
T ss_pred HHHHHHHHHHHcCCeEEEEcC
Confidence 88889988888999999843
No 339
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=21.91 E-value=1.6e+02 Score=30.25 Aligned_cols=36 Identities=17% Similarity=0.081 Sum_probs=23.4
Q ss_pred CcccEEEEEcCc---hh--------HHHHHhhhcCCCCcEEEEeCCC
Q 003509 754 ERVDFVACLGGD---GV--------ILHASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 754 ~~vDLVIvLGGD---GT--------ILrAArlf~~s~~PILGINlGr 789 (814)
.++|.||.-||. .+ ++...+.+...+.|||||-+|.
T Consensus 36 ~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pvlGIC~G~ 82 (205)
T PRK13141 36 LAADGVILPGVGAFPDAMANLRERGLDEVIKEAVASGKPLLGICLGM 82 (205)
T ss_pred ccCCEEEECCCCchHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHH
Confidence 357888876642 22 3445555555789999997763
No 340
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=21.89 E-value=1.2e+03 Score=28.61 Aligned_cols=91 Identities=11% Similarity=-0.014 Sum_probs=52.4
Q ss_pred ceEEEcCC-C-----CHhhHHHHHHcCCcEEEE--cCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHH
Q 003509 267 VTFCRGGQ-V-----TEEGLKWLMEKGYKTIVD--IRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKF 338 (814)
Q Consensus 267 ~~LYRSGq-p-----T~eDla~L~~lGIKTVID--LRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~f 338 (814)
..+||-.. + ....++..++.|...... +.....-...+.....+.+...|+..+.|.=. ....++.++.++
T Consensus 110 idv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDt-aG~l~P~~v~~l 188 (596)
T PRK14042 110 VDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDM-AGLLTPTVTVEL 188 (596)
T ss_pred CCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCc-ccCCCHHHHHHH
Confidence 35666652 2 234577788888887766 43322011111112233456678888777643 334567788777
Q ss_pred HHHHhcCCCCcEEEeCccCC
Q 003509 339 ASLVSNSSKKPLYLHSKEGV 358 (814)
Q Consensus 339 leiL~d~~~~PVLVHCtAGK 358 (814)
+..+.+..+-||-+||..-.
T Consensus 189 v~alk~~~~ipi~~H~Hnt~ 208 (596)
T PRK14042 189 YAGLKQATGLPVHLHSHSTS 208 (596)
T ss_pred HHHHHhhcCCEEEEEeCCCC
Confidence 77776555578777665443
No 341
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=21.62 E-value=1.8e+02 Score=29.57 Aligned_cols=84 Identities=15% Similarity=0.048 Sum_probs=47.8
Q ss_pred EEEEecCC-ch-HHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcc-cccCcccEEEEEcCchhHH
Q 003509 693 VLVLKKPG-PA-LMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTS-DLHERVDFVACLGGDGVIL 769 (814)
Q Consensus 693 VlIV~K~~-~e-a~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~-~l~~~vDLVIvLGGDGTIL 769 (814)
|+|+.... .. -....+.+.+.+++ .|+.+.+.....+.-.. .. -.. -+...+|-||+..++..-.
T Consensus 2 igvv~~~~~~~~~~~~~~~i~~~~~~-~g~~~~~~~~~~~~~~~------~~-----~~~~l~~~~vdgiii~~~~~~~~ 69 (266)
T cd06282 2 VGVVLPSLANPVFAECVQGIQEEARA-AGYSLLLATTDYDAERE------AD-----AVETLLRQRVDGLILTVADAATS 69 (266)
T ss_pred eEEEeCCCCcchHHHHHHHHHHHHHH-CCCEEEEeeCCCCHHHH------HH-----HHHHHHhcCCCEEEEecCCCCch
Confidence 66666433 22 34556677777776 78888774321110000 00 011 1235789999887775433
Q ss_pred HHHhhhcCCCCcEEEEeCC
Q 003509 770 HASNLFRGAVPPVISFNLG 788 (814)
Q Consensus 770 rAArlf~~s~~PILGINlG 788 (814)
.....+...++|++.++..
T Consensus 70 ~~~~~~~~~~ipvV~~~~~ 88 (266)
T cd06282 70 PALDLLDAERVPYVLAYND 88 (266)
T ss_pred HHHHHHhhCCCCEEEEecc
Confidence 4456666778999888653
No 342
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=21.56 E-value=3.3e+02 Score=26.75 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=31.6
Q ss_pred CcccEEEEEcCch---------hHHHHHhhhcCCCCcEEEEeCCC-----cccCCC
Q 003509 754 ERVDFVACLGGDG---------VILHASNLFRGAVPPVISFNLGS-----LGFLTS 795 (814)
Q Consensus 754 ~~vDLVIvLGGDG---------TILrAArlf~~s~~PILGINlGr-----LGFLTe 795 (814)
.+.|++|+.||.+ -++.-.+.+.....||.+|..|. .|.|..
T Consensus 62 ~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~aGlL~g 117 (179)
T TIGR01383 62 EEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAPAVLLAAGVLLG 117 (179)
T ss_pred ccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhcCCCCC
Confidence 5689999999964 24555666777889999998875 477753
No 343
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=21.48 E-value=2.3e+02 Score=34.29 Aligned_cols=74 Identities=18% Similarity=0.174 Sum_probs=41.2
Q ss_pred ccCCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCch-
Q 003509 688 TTPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG- 766 (814)
Q Consensus 688 ~~~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDG- 766 (814)
+..++|+|+-.--.. ...+...|+. .|+++.+... ..++ ..+|.+|. +|=|
T Consensus 4 ~~~~~i~iiDyG~GN----~~sl~~al~~-~G~~v~~v~~---------------------~~~l-~~~D~lIl-pG~gs 55 (538)
T PLN02617 4 SADSEVTLLDYGAGN----VRSVRNAIRH-LGFTIKDVQT---------------------PEDI-LNADRLIF-PGVGA 55 (538)
T ss_pred CCCCeEEEEECCCCC----HHHHHHHHHH-CCCeEEEECC---------------------hhhh-ccCCEEEE-CCCCC
Confidence 456788877544333 2344555555 6777754321 1122 46786655 5522
Q ss_pred --hH---------HHHHhhhcCCCCcEEEEeCCC
Q 003509 767 --VI---------LHASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 767 --TI---------LrAArlf~~s~~PILGINlGr 789 (814)
+. ....+.+....+|||||-+|.
T Consensus 56 ~~~~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~ 89 (538)
T PLN02617 56 FGSAMDVLNNRGMAEALREYIQNDRPFLGICLGL 89 (538)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHcCCCEEEECHHH
Confidence 32 223444445689999998873
No 344
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=21.43 E-value=2.4e+02 Score=30.50 Aligned_cols=89 Identities=10% Similarity=0.062 Sum_probs=47.8
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeE-EEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhH
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMN-ILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 768 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~-V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTI 768 (814)
..+|+++.-...+....+....+.+.+ .|++ |.+- ++... ... . .....+....+|.|++-|||=..
T Consensus 28 ~~rI~~iptAS~~~~~~~~~~~~~~~~-lG~~~v~~l-~i~~r-~~a-~--------~~~~~~~l~~ad~I~~~GGnq~~ 95 (250)
T TIGR02069 28 DAIIVIITSASEEPREVGERYITIFSR-LGVKEVKIL-DVRER-EDA-S--------DENAIALLSNATGIFFTGGDQLR 95 (250)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHH-cCCceeEEE-ecCCh-HHc-c--------CHHHHHHHhhCCEEEEeCCCHHH
Confidence 348888876554434445566666665 5663 2110 11000 000 0 01112335689999999999322
Q ss_pred ----------HHHHhhhcCCCCcEEEEeCCCc
Q 003509 769 ----------LHASNLFRGAVPPVISFNLGSL 790 (814)
Q Consensus 769 ----------LrAArlf~~s~~PILGINlGrL 790 (814)
+.+.+..-...+||+|.+-|..
T Consensus 96 l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~ 127 (250)
T TIGR02069 96 ITSLLGDTPLLDRLRKRVHEGIILGGTSAGAA 127 (250)
T ss_pred HHHHHcCCcHHHHHHHHHHcCCeEEEccHHHH
Confidence 2334433345789999987753
No 345
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=21.40 E-value=5.1e+02 Score=27.53 Aligned_cols=109 Identities=16% Similarity=0.179 Sum_probs=61.5
Q ss_pred cceeeecCC--cccccCCchhHHhhcccccCCEEEEEecCCc-h-HHHHHHHHHHHHhcCCCeEEEEccch---hhHhhc
Q 003509 662 CNREKVTES--SLAFTHPSTQQQMLMWKTTPRTVLVLKKPGP-A-LMEEAKEVASFLYHQEKMNILVEPDV---HDIFAR 734 (814)
Q Consensus 662 c~r~~~~~s--~~~~~~ps~~~~~l~w~~~~kkVlIV~K~~~-e-a~~~a~eLi~~L~e~~Gi~V~ve~~~---a~~l~~ 734 (814)
=||++|..- .+-+ .|+...+.|.- ++.++|+++..... . .......+.+.+.+ .|+++++.... .....
T Consensus 28 ~tr~rV~~~a~~lgY-~pn~~a~~l~~-~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~~~~~~~~~- 103 (327)
T PRK10423 28 AITAKVEAAIKELNY-APSALARSLKL-NQTRTIGMLITASTNPFYSELVRGVERSCFE-RGYSLVLCNTEGDEQRMNR- 103 (327)
T ss_pred HHHHHHHHHHHHHCC-CccHHHHHHhh-CCCCeEEEEeCCCCCCcHHHHHHHHHHHHHH-cCCEEEEEeCCCCHHHHHH-
Confidence 346666552 4555 36655555653 34578998875433 2 45567788888887 79888763221 00000
Q ss_pred CCCCccceeeeccCccc-ccCcccEEEEEcCchhHHHHHhhhcCCCCcEEEEeC
Q 003509 735 IPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVILHASNLFRGAVPPVISFNL 787 (814)
Q Consensus 735 ~p~~~~v~~~~~~~~~~-l~~~vDLVIvLGGDGTILrAArlf~~s~~PILGINl 787 (814)
.... ....+|-||+++.+........+-...++||+-|+.
T Consensus 104 -------------~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~~~~iPvV~i~~ 144 (327)
T PRK10423 104 -------------NLETLMQKRVDGLLLLCTETHQPSREIMQRYPSVPTVMMDW 144 (327)
T ss_pred -------------HHHHHHHcCCCEEEEeCCCcchhhHHHHHhcCCCCEEEECC
Confidence 0111 234689999998875533221111223789988863
No 346
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.24 E-value=1.9e+02 Score=29.64 Aligned_cols=98 Identities=9% Similarity=0.032 Sum_probs=54.8
Q ss_pred EEEEecCCc-h-HHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchh-HH
Q 003509 693 VLVLKKPGP-A-LMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV-IL 769 (814)
Q Consensus 693 VlIV~K~~~-e-a~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGT-IL 769 (814)
|+|+..... . .......+.+.+.+ .|+++.+.....+.-... ..+ ...+...+|-+|+.+.+.. ..
T Consensus 2 i~vi~~~~~~~~~~~~~~~i~~~~~~-~g~~~~~~~~~~~~~~~~---~~i-------~~~~~~~~dgiii~~~~~~~~~ 70 (277)
T cd06319 2 IAYIVSDLRIPFWQIMGRGVKSKAKA-LGYDAVELSAENSAKKEL---ENL-------RTAIDKGVSGIIISPTNSSAAV 70 (277)
T ss_pred eEEEeCCCCchHHHHHHHHHHHHHHh-cCCeEEEecCCCCHHHHH---HHH-------HHHHhcCCCEEEEcCCchhhhH
Confidence 566654333 3 34556777777777 788887643211100000 000 0112457999998887764 33
Q ss_pred HHHhhhcCCCCcEEEEeCCC--cccCCCCCcccH
Q 003509 770 HASNLFRGAVPPVISFNLGS--LGFLTSHPVSSY 801 (814)
Q Consensus 770 rAArlf~~s~~PILGINlGr--LGFLTe~~~dei 801 (814)
.....+...++||+.|+... -.++..+..++.
T Consensus 71 ~~l~~~~~~~ipvV~~~~~~~~~~~~~~v~~d~~ 104 (277)
T cd06319 71 TLLKLAAQAKIPVVIADIGAEGGDYVSYIKSDNY 104 (277)
T ss_pred HHHHHHHHCCCCEEEEecCCCCCceEEEEeeccH
Confidence 45566667799999998642 223444555554
No 347
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=21.14 E-value=6e+02 Score=28.28 Aligned_cols=45 Identities=11% Similarity=0.158 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHHHHhCCCC
Q 003509 330 PTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 330 ps~e~v~~fleiL~d~~~~PVLVHCtAGKDRTGal~aLLl~l~GV~ 375 (814)
|+.+.+++++.-+--..+.||+|.|..|.-.++.++.++ .++|.+
T Consensus 86 p~~~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L-~~~G~~ 130 (320)
T PLN02723 86 PSEEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMF-RVFGHE 130 (320)
T ss_pred CCHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHH-HHcCCC
Confidence 455666666665422356799999998874544443333 345765
No 348
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.13 E-value=2.3e+02 Score=28.77 Aligned_cols=84 Identities=11% Similarity=0.054 Sum_probs=48.3
Q ss_pred EEEEecCCc-h-HHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcccccCcccEEEEEcCchhHHH
Q 003509 693 VLVLKKPGP-A-LMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (814)
Q Consensus 693 VlIV~K~~~-e-a~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGDGTILr 770 (814)
|+++.+... . .......+.+.+.+ .|+++++.....+.-.. ...+ ..-+...+|-+|+.+.+...+.
T Consensus 2 I~vi~~~~~~~~~~~~~~g~~~~a~~-~g~~~~~~~~~~~~~~~---~~~i-------~~~~~~~vdgiii~~~~~~~~~ 70 (268)
T cd06289 2 IGLVINDLTNPFFAELAAGLEEVLEE-AGYTVFLANSGEDVERQ---EQLL-------STMLEHGVAGIILCPAAGTSPD 70 (268)
T ss_pred EEEEecCCCcchHHHHHHHHHHHHHH-cCCeEEEecCCCChHHH---HHHH-------HHHHHcCCCEEEEeCCCCccHH
Confidence 666664433 3 34455667777776 78887763221100000 0000 0012357899999987765455
Q ss_pred HHhhhcCCCCcEEEEeC
Q 003509 771 ASNLFRGAVPPVISFNL 787 (814)
Q Consensus 771 AArlf~~s~~PILGINl 787 (814)
+.+.+...++|++.++.
T Consensus 71 ~~~~~~~~~ipvV~~~~ 87 (268)
T cd06289 71 LLKRLAESGIPVVLVAR 87 (268)
T ss_pred HHHHHHhcCCCEEEEec
Confidence 66677777899999874
No 349
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=21.04 E-value=4.4e+02 Score=28.08 Aligned_cols=132 Identities=14% Similarity=0.043 Sum_probs=69.3
Q ss_pred ccccceeecccccccceeeeecCcccceeeecC--CcccccCCchhHHhhcccccCCEEEEEecCCc-h-HHHHHHHHHH
Q 003509 637 SSTGVVRVQSRKKAEMFLVRTDGFSCNREKVTE--SSLAFTHPSTQQQMLMWKTTPRTVLVLKKPGP-A-LMEEAKEVAS 712 (814)
Q Consensus 637 s~~~~~~~~~~~~~~~~l~r~d~~sc~r~~~~~--s~~~~~~ps~~~~~l~w~~~~kkVlIV~K~~~-e-a~~~a~eLi~ 712 (814)
|.+-|.||...+..+.. ...=||++|.. ..+-+. |....+.|. .+..++|+|+..... . -..+...+.+
T Consensus 13 S~~TVSrvLn~~~~~~~-----Vs~~tr~rV~~~a~elgY~-pn~~a~~l~-~~~~~~Igvv~~~~~~~~~~~l~~gi~~ 85 (328)
T PRK11303 13 SRTTASYVINGKAKQYR-----VSDKTVEKVMAVVREHNYH-PNAVAAGLR-AGRTRSIGLIIPDLENTSYARIAKYLER 85 (328)
T ss_pred CHHHHHHHHcCCCCCCC-----cCHHHHHHHHHHHHHhCCC-CCHHHHHhh-cCCCceEEEEeCCCCCchHHHHHHHHHH
Confidence 34445666655432111 11335666654 245554 555555554 334578998875333 2 3445666777
Q ss_pred HHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCccc-ccCcccEEEEEcCchhHHHHHhhhcCCCCcEEEEeC
Q 003509 713 FLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVILHASNLFRGAVPPVISFNL 787 (814)
Q Consensus 713 ~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~-l~~~vDLVIvLGGDGTILrAArlf~~s~~PILGINl 787 (814)
.+.+ .|+++.+.....+.-.. . .-... ....+|-||.++.+-..-...+.+....+||+-|+.
T Consensus 86 ~~~~-~g~~~~~~~~~~~~~~~------~-----~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~v~~ 149 (328)
T PRK11303 86 QARQ-RGYQLLIACSDDQPDNE------M-----RCAEHLLQRQVDALIVSTSLPPEHPFYQRLQNDGLPIIALDR 149 (328)
T ss_pred HHHH-cCCEEEEEeCCCCHHHH------H-----HHHHHHHHcCCCEEEEcCCCCCChHHHHHHHhcCCCEEEECC
Confidence 7776 79888763211000000 0 00111 235789999888643222334445566899998875
No 350
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=21.00 E-value=4.5e+02 Score=27.33 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=43.9
Q ss_pred HHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEeecCCCCCCCHHHHHHHHHHHhcCCC-CcEEEeCcc
Q 003509 280 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSK-KPLYLHSKE 356 (814)
Q Consensus 280 la~L~~lGIKTVIDLRsee~E~~~~p~~e~~~~e~~GI~yVhIPV~d~~~ps~e~v~~fleiL~d~~~-~PVLVHCtA 356 (814)
+++.+++|++..+++-....-.+.+.......+...|+..+.++=. ....++..+..+++.+.+..+ .|+=+||.-
T Consensus 114 v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt-~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hn 190 (237)
T PF00682_consen 114 VKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADT-VGIMTPEDVAELVRALREALPDIPLGFHAHN 190 (237)
T ss_dssp HHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEET-TS-S-HHHHHHHHHHHHHHSTTSEEEEEEBB
T ss_pred HHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCc-cCCcCHHHHHHHHHHHHHhccCCeEEEEecC
Confidence 5667789999999885543111111112233445568888888744 344567788777777754433 676666554
No 351
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=20.89 E-value=2.3e+02 Score=27.67 Aligned_cols=43 Identities=7% Similarity=0.008 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHhcCCCCcEEEeCcc---CCChHHHHHHHHHHhCCCC
Q 003509 331 TMEQVEKFASLVSNSSKKPLYLHSKE---GVWRTYAMVSRWRQYMARC 375 (814)
Q Consensus 331 s~e~v~~fleiL~d~~~~PVLVHCtA---GKDRTGal~aLLl~l~GV~ 375 (814)
+.+.+++++..+--..+.+|++.|.. |. +++-++. ++.++|.+
T Consensus 79 ~~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~-~A~r~~~-~l~~~G~~ 124 (138)
T cd01445 79 SEAEFAAMFEAKGIDLDKHLIATDGDDLGGF-TACHIAL-AARLCGHP 124 (138)
T ss_pred CHHHHHHHHHHcCCCCCCeEEEECCCCCcch-HHHHHHH-HHHHcCCC
Confidence 34555655554422346799999975 33 4443333 33467865
No 352
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=20.86 E-value=1.7e+02 Score=30.14 Aligned_cols=36 Identities=22% Similarity=0.129 Sum_probs=27.1
Q ss_pred cCcccEEEEEcCchhHHH-HHhhhcCCCCcEEEEeCC
Q 003509 753 HERVDFVACLGGDGVILH-ASNLFRGAVPPVISFNLG 788 (814)
Q Consensus 753 ~~~vDLVIvLGGDGTILr-AArlf~~s~~PILGINlG 788 (814)
..++|.||+.+.|-..+. ....+....+||+.++..
T Consensus 58 ~~~vdgiIi~~~~~~~~~~~l~~~~~~~iPvv~~~~~ 94 (272)
T cd06300 58 AQGVDAIIINPASPTALNPVIEEACEAGIPVVSFDGT 94 (272)
T ss_pred HcCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEEecC
Confidence 358999999998865433 456666679999999853
No 353
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=20.77 E-value=64 Score=31.31 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=22.8
Q ss_pred cEEEEEcCchhHHHHHhhhc---CCCCcEEEE
Q 003509 757 DFVACLGGDGVILHASNLFR---GAVPPVISF 785 (814)
Q Consensus 757 DLVIvLGGDGTILrAArlf~---~s~~PILGI 785 (814)
.-||+|-|||++++....+. .+.+||+=|
T Consensus 47 ~~vv~i~GDG~f~~~~~el~ta~~~~~~v~~v 78 (153)
T PF02775_consen 47 RPVVAITGDGSFLMSLQELATAVRYGLPVVIV 78 (153)
T ss_dssp SEEEEEEEHHHHHHHGGGHHHHHHTTSSEEEE
T ss_pred ceeEEecCCcceeeccchhHHHhhccceEEEE
Confidence 57999999999999977654 366777655
No 354
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.38 E-value=1.9e+02 Score=29.87 Aligned_cols=98 Identities=12% Similarity=0.046 Sum_probs=55.7
Q ss_pred EEEEEecCCc-h-HHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCcc-cccCcccEEEEEcCchhH
Q 003509 692 TVLVLKKPGP-A-LMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTS-DLHERVDFVACLGGDGVI 768 (814)
Q Consensus 692 kVlIV~K~~~-e-a~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~-~l~~~vDLVIvLGGDGTI 768 (814)
+|+++..... . ....+..+.+.+.+ .|+++.+.....+ ... .. ...+ -+...+|.||+.+.|-..
T Consensus 1 ~igv~~~~~~~~~~~~~~~~i~~~~~~-~g~~v~~~~~~~~-~~~-----~~-----~~i~~~~~~~~Dgiii~~~~~~~ 68 (282)
T cd06318 1 KIGFSQYTLNSPFFAALTEAAKAHAKA-LGYELISTDAQGD-LTK-----QI-----ADVEDLLTRGVNVLIINPVDPEG 68 (282)
T ss_pred CeeEEeccccCHHHHHHHHHHHHHHHH-cCCEEEEEcCCCC-HHH-----HH-----HHHHHHHHcCCCEEEEecCCccc
Confidence 4666654333 3 44556788888887 7998876432111 000 00 0011 124579999988877432
Q ss_pred -HHHHhhhcCCCCcEEEEeCCC---cccCCCCCcccH
Q 003509 769 -LHASNLFRGAVPPVISFNLGS---LGFLTSHPVSSY 801 (814)
Q Consensus 769 -LrAArlf~~s~~PILGINlGr---LGFLTe~~~dei 801 (814)
....+.+...++||+-|+... ...+..+..++.
T Consensus 69 ~~~~i~~~~~~~iPvV~~~~~~~~~~~~~~~v~~d~~ 105 (282)
T cd06318 69 LVPAVAAAKAAGVPVVVVDSSINLEAGVVTQVQSSNA 105 (282)
T ss_pred hHHHHHHHHHCCCCEEEecCCCCCCcCeEEEEecCcH
Confidence 344566667799999998642 134455655554
No 355
>PLN02347 GMP synthetase
Probab=20.27 E-value=1.5e+02 Score=35.77 Aligned_cols=77 Identities=14% Similarity=0.099 Sum_probs=43.2
Q ss_pred CCEEEEEecCCchHHHHHHHHHHHHhcCCCeEEEEccchhhHhhcCCCCccceeeeccCccccc-CcccEEEEEcCchhH
Q 003509 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLH-ERVDFVACLGGDGVI 768 (814)
Q Consensus 690 ~kkVlIV~K~~~ea~~~a~eLi~~L~e~~Gi~V~ve~~~a~~l~~~p~~~~v~~~~~~~~~~l~-~~vDLVIvLGGDGTI 768 (814)
..+|+|+=....-. ..|++.|++ .|+.+.+.+.. .+.+++. .++|.||.-||-++.
T Consensus 10 ~~~IlIID~G~~~t----~~I~r~lre-lgv~~~v~p~~------------------~~~~~i~~~~~dgIILsGGP~sv 66 (536)
T PLN02347 10 LDVVLILDYGSQYT----HLITRRVRE-LGVYSLLLSGT------------------ASLDRIASLNPRVVILSGGPHSV 66 (536)
T ss_pred CCEEEEEECCCcHH----HHHHHHHHH-CCCeEEEEECC------------------CCHHHHhcCCCCEEEECCCCCcc
Confidence 45788886665532 334455555 56666543211 1112221 267889999987643
Q ss_pred H--------H-HHhhhcCCCCcEEEEeCCC
Q 003509 769 L--------H-ASNLFRGAVPPVISFNLGS 789 (814)
Q Consensus 769 L--------r-AArlf~~s~~PILGINlGr 789 (814)
- . ..+.+...++|||||-+|.
T Consensus 67 ~~~~~p~~~~~i~~~~~~~~iPILGIClG~ 96 (536)
T PLN02347 67 HVEGAPTVPEGFFDYCRERGVPVLGICYGM 96 (536)
T ss_pred cccCCchhhHHHHHHHHhcCCcEEEECHHH
Confidence 2 1 1222334589999998875
No 356
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=20.17 E-value=74 Score=32.13 Aligned_cols=37 Identities=22% Similarity=0.370 Sum_probs=28.3
Q ss_pred cEEEEEcCchhHHHHHhhhc---CCCCcEEEE--eCCCcccC
Q 003509 757 DFVACLGGDGVILHASNLFR---GAVPPVISF--NLGSLGFL 793 (814)
Q Consensus 757 DLVIvLGGDGTILrAArlf~---~s~~PILGI--NlGrLGFL 793 (814)
.-||+|-|||.++.....+. .+++||+=| |=|..|.+
T Consensus 67 ~~vv~i~GDG~f~m~~~eL~ta~~~~l~vi~vV~NN~~~g~~ 108 (177)
T cd02010 67 RKVVAVSGDGGFMMNSQELETAVRLKIPLVVLIWNDNGYGLI 108 (177)
T ss_pred CcEEEEEcchHHHhHHHHHHHHHHHCCCeEEEEEECCcchHH
Confidence 47999999999988876553 457777766 77777765
No 357
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.09 E-value=3.8e+02 Score=28.07 Aligned_cols=83 Identities=12% Similarity=0.069 Sum_probs=50.6
Q ss_pred CEEEEEecCCc-h-HHHHHHHHHHHHhcCCCeEEEEccch---hhHhhcCCCCccceeeeccCcccccCcccEEEEEcCc
Q 003509 691 RTVLVLKKPGP-A-LMEEAKEVASFLYHQEKMNILVEPDV---HDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD 765 (814)
Q Consensus 691 kkVlIV~K~~~-e-a~~~a~eLi~~L~e~~Gi~V~ve~~~---a~~l~~~p~~~~v~~~~~~~~~~l~~~vDLVIvLGGD 765 (814)
|+|+++..... . ....+..+.+.+.+ .|.++++-... ..... .+ ..-...++|-||+++.|
T Consensus 1 ~~ig~i~~~~~~~~~~~~~~gi~~~a~~-~gy~~~~~~~~~~~~~~~~------~i-------~~l~~~~vdgiil~~~~ 66 (280)
T cd06315 1 KNIIFVASDLKNGGILGVGEGVREAAKA-IGWNLRILDGRGSEAGQAA------AL-------NQAIALKPDGIVLGGVD 66 (280)
T ss_pred CeEEEEecccCCcHHHHHHHHHHHHHHH-cCcEEEEECCCCCHHHHHH------HH-------HHHHHcCCCEEEEcCCC
Confidence 57887765433 3 45667788888887 79888763221 11100 00 00124589999999987
Q ss_pred hhH-HHHHhhhcCCCCcEEEEeC
Q 003509 766 GVI-LHASNLFRGAVPPVISFNL 787 (814)
Q Consensus 766 GTI-LrAArlf~~s~~PILGINl 787 (814)
... -.....+....+|++-|+.
T Consensus 67 ~~~~~~~~~~~~~~~iPvV~~d~ 89 (280)
T cd06315 67 AAELQAELELAQKAGIPVVGWHA 89 (280)
T ss_pred HHHHHHHHHHHHHCCCCEEEecC
Confidence 542 2334445557899999875
No 358
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=20.01 E-value=84 Score=32.85 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=20.9
Q ss_pred hHHHHHhhhcC-CCCcEEEEeCCCcccCCC
Q 003509 767 VILHASNLFRG-AVPPVISFNLGSLGFLTS 795 (814)
Q Consensus 767 TILrAArlf~~-s~~PILGINlGrLGFLTe 795 (814)
++|.+.+.+.. ..+|++++|||.+|-++-
T Consensus 161 ~ll~~~~~~~~~~~~p~i~~~MG~~G~~SR 190 (225)
T cd00502 161 RLLKFTRQVKNLYDIPLIAINMGELGKLSR 190 (225)
T ss_pred HHHHHHHHHHhcCCCCEEEEEcCCCCchhh
Confidence 46666666643 268999999999996553
Done!