Query 003509
Match_columns 814
No_of_seqs 361 out of 2489
Neff 4.6
Searched_HMMs 29240
Date Tue Mar 26 17:59:10 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003509.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1558-1562//hhsearch_pdb/003509hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ywf_A Phosphotyrosine protein 1.0 1 1 226.2 12.8 185 241-440 25-296 (296)
2 3pfn_A NAD kinase; structural 1.0 1 1 208.2 11.9 136 670-809 20-162 (365)
3 3afo_A NADH kinase POS5; alpha 1.0 1 1 198.6 9.3 151 658-809 9-169 (388)
4 1xri_A AT1G05000; structural g 1.0 1 1 160.2 13.5 127 244-389 4-134 (151)
5 1z0s_A Probable inorganic poly 1.0 1 1 150.7 10.2 101 682-809 18-121 (278)
6 2f46_A Hypothetical protein; s 1.0 1 1 148.1 15.2 130 246-393 15-147 (156)
7 2an1_A Putative kinase; struct 1.0 1 1 147.3 7.8 116 687-810 2-118 (292)
8 1u0t_A Inorganic polyphosphate 1.0 1 1 146.6 8.2 121 689-810 3-130 (307)
9 4erc_A Dual specificity protei 1.0 1 1 136.6 15.2 131 244-396 4-138 (150)
10 2i2c_A Probable inorganic poly 1.0 1 1 133.5 10.8 90 691-810 1-92 (272)
No 1
>1ywf_A Phosphotyrosine protein phosphatase PTPB; four stranded parallel beta sheet with flanking helices, structural genomics, PSI; 1.71A {Mycobacterium tuberculosis} SCOP: c.45.1.5 PDB: 2oz5_A*
Probab=1.00 E-value=1 Score=226.24 Aligned_cols=185 Identities=14% Similarity=0.112 Sum_probs=144.4
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCEEEECCCC---CHHHHHHHHHCCCCEEEECCCCCCCCCCH-HHHHHHHHHCCC
Q ss_conf 87567883110105886655567975409985999---97429999975982999869883247520-566587552199
Q 003509 241 IHTLFANWSPVYLSNSKDDIASKDSEVTFCRGGQV---TEEGLKWLMEKGYKTIVDIRAERVKDNFY-EAAIDDAILSGK 316 (814)
Q Consensus 241 ~~t~i~Nfr~V~~~~~~d~~~~~~~e~~LYRSGqi---T~edla~Lk~lGIKTVIDLRse~~E~~~~-p~~e~~~~~~~G 316 (814)
....+.|||++++.++. +++++||||+++ +++++++|+++||+||||||++. |.... | .....|
T Consensus 25 ~l~g~~NfRDlGGy~t~------vr~G~lyRS~~l~~lt~~d~~~L~~lGI~tVIDLR~~~-E~~~~~p-----d~~~~G 92 (296)
T 1ywf_A 25 ELPGAWNFRDVADTATA------LRPGRLFRSSELSRLDDAGRATLRRLGITDVADLRSSR-EVARRGP-----GRVPDG 92 (296)
T ss_dssp CCTTCCSCEEGGGTCTT------SCTTSEEEESCCTTCCHHHHHHHHHHTCCEEEECCCHH-HHHHHCS-----CCCCTT
T ss_pred CCCCCCCCCCCCCCCCC------CCCCCEECCCCCCCCCHHHHHHHHHCCCCEEEECCCHH-HHHCCCC-----CCCCCC
T ss_conf 58998836457886224------36762323577453999999999967998899892856-6211389-----878788
Q ss_pred CEEEEEECCCCCC-------C-------------------C--------------------------HHHHHHHHHHHHC
Q ss_conf 3999962689999-------9-------------------9--------------------------9999999999854
Q 003509 317 VELIKIPVEVRTA-------P-------------------T--------------------------MEQVEKFASLVSN 344 (814)
Q Consensus 317 I~yIhIPV~d~~~-------P-------------------s--------------------------~e~i~~fl~il~d 344 (814)
++|+|+|+.+... | . ..++.++++.+.+
T Consensus 93 i~~~~iPi~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~m~~~Y~~~~~~~~~~~~~~~~l~~l~~ 172 (296)
T 1ywf_A 93 IDVHLLPFPDLADDDADDSAPHETAFKRLLTNDGSNGESGESSQSINDAATRYMTDEYRQFPTRNGAQRALHRVVTLLAA 172 (296)
T ss_dssp CEEEECCCCCSCC-------------------------------CCCHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_conf 77999337664332112344203678888641012233100110011008999999999998532368999999997544
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHH-----------------------------
Q ss_conf 999959880846998499999999996799999999988540212245638-----------------------------
Q 003509 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTITSNDVLLKDST----------------------------- 395 (814)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGalvaLlrll~Gvd~eeIi~Dyllsn~~l~~~~~----------------------------- 395 (814)
++|+||||++||||||+++++++..+||+.++|++||++||.++....+
T Consensus 173 --~~pvl~HC~aGkDRTG~~~alll~~~g~~~~~I~~DY~~Tn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (296)
T 1ywf_A 173 --GRPVLTHCFAGKDRTGFVVALVLEAVGLDRDVIVADYLRSNDSVPQLRARISEMIQQRFDTELAPEVVTFTKARLSDG 250 (296)
T ss_dssp --TCCEEEECSSSSSHHHHHHHHHHHHTTCCHHHHHHHHHGGGGGHHHHHHHHHHHHHTTTTSCCCHHHHHHHHTTTCHH
T ss_pred --CCCEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf --898898788877650489999999819999999999999998799999999999875213333425777642332124
Q ss_pred --HHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf --989986222344542101209999997621552100000011012
Q 003509 396 --RTRKLKASAGKFLLEEKYETVKENQDEIQTKNGVFGFGLSVDMDK 440 (814)
Q Consensus 396 --~~~a~~m~~~l~~l~~~~g~~ee~l~~l~s~~d~~le~ar~nl~v 440 (814)
+.+++.|.+++..+++.||+++.|++.. +++++.++.+|.++++
T Consensus 251 ~~~~~~~~l~~~l~~i~~~yGs~~~YL~~~-Gl~~~~i~~LR~~ll~ 296 (296)
T 1ywf_A 251 VLGVRAEYLAAARQTIDETYGSLGGYLRDA-GISQATVNRMRGVLLG 296 (296)
T ss_dssp HHSCCHHHHHHHHHHHHHHHSSHHHHHHHT-TCCHHHHHHHHHHHC-
T ss_pred HHCCCHHHHHHHHHHHHHHCCCHHHHHHHC-CCCHHHHHHHHHHHHC
T ss_conf 506689999999999999809999999886-9999999999998539
No 2
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=1.00 E-value=1 Score=208.21 Aligned_cols=136 Identities=39% Similarity=0.707 Sum_probs=111.7
Q ss_pred CCCCCCCCCHHHHHHCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHHCCCCEEEEECCCHHHHHH--CCCCCCC----CE
Q ss_conf 86434598246773003446879999936991-18999999999982189819999265246752--1899863----10
Q 003509 670 SSLAFTHPSTQQQMLMWKTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFA--RIPGFGF----VQ 742 (814)
Q Consensus 670 s~~~~~~ps~~~~~l~w~~~~k~VlIV~K~~~-e~~e~a~~I~~~L~~~~GieViVe~~~a~~l~--~~p~~~~----i~ 742 (814)
+..++..|++ |.|+|.+++++|+||+|+++ ++.+.++++++||.+ +|++|++|+.+++.+. ....+.. ..
T Consensus 20 ~~~~~~~~~~--~~l~w~~~~k~I~iv~K~~~~~~~~~~~~l~~~L~~-~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~ 96 (365)
T 3pfn_A 20 TIMHIQDPAS--QRLTWNKSPKSVLVIKKMRDASLLQPFKELCTHLME-ENMIVYVEKKVLEDPAIASDESFGAVKKKFC 96 (365)
T ss_dssp TEEEEECTTT--CBEEESSCCCEEEEEECTTCGGGHHHHHHHHHHHHH-TSCEEEEEHHHHHSHHHHHCSTTHHHHHHCE
T ss_pred HCEEECCCCC--CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH-CCCEEEEEHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 2106438664--432068789889999517987899999999999987-8999999667844220022334432222221
Q ss_pred EEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 0102673332576339999859614999976403999969997289964588889364999995620
Q 003509 743 TFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPVSSYLNSLCFLS 809 (814)
Q Consensus 743 t~~~~~~~~l~~~~DLVIsLGGDGTILrAArlf~~~~iPILGINlGrLGFLTei~~eei~e~Le~L~ 809 (814)
++ ..+.+++.+.+|+|||||||||||+|+|+++..++||||||+|+|||||+++++++++.|++++
T Consensus 97 ~~-~~~~~~~~~~~DlvI~lGGDGT~L~aa~~~~~~~~PvlGiN~G~LGFLt~~~~~~~~~~l~~vl 162 (365)
T 3pfn_A 97 TF-REDYDDISNQIDFIICLGGDGTLLYASSLFQGSVPPVMAFHLGSLGFLTPFSFENFQSQVTQVI 162 (365)
T ss_dssp EE-CTTTCCCTTTCSEEEEESSTTHHHHHHHHCSSSCCCEEEEESSSCTTTCCEESTTHHHHHHHHH
T ss_pred CC-CCCHHHCCCCCCEEEEECCHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEECHHHHHHHHHHHH
T ss_conf 23-4676562657898999868189999999852679978999089975304645899999999998
No 3
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=198.63 Aligned_cols=151 Identities=26% Similarity=0.431 Sum_probs=121.0
Q ss_pred CCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHHCCC--CEEEEECCCHHHHHHC
Q ss_conf 57510001112786434598246773003446879999936991-18999999999982189--8199992652467521
Q 003509 658 DGFSCNREKVTESSLAFTHPSTQQQMLMWKTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQE--KMNILVEPDVHDIFAR 734 (814)
Q Consensus 658 d~~sc~r~~~~~s~~~~~~ps~~~~~l~w~~~~k~VlIV~K~~~-e~~e~a~~I~~~L~~~~--GieViVe~~~a~~l~~ 734 (814)
+..+|+.+..+.....+.+|+++++.|.|.++|++|+||+|+.+ ++.+.+.++.+||.+ + |++|++++..++.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~V~II~n~~~~~~~~~~~~l~~~L~~-~~~gi~V~ve~~~a~~l~~ 87 (388)
T 3afo_A 9 KIKPVNNLRSSSSADFVSPPNSKLQSLIWQNPLQNVYITKKPWTPSTREAMVEFITHLHE-SYPEVNVIVQPDVAEEISQ 87 (388)
T ss_dssp EEEEGGGSCCCCCCEEEC----CCEEEECSSCCCEEEEEECTTCHHHHHHHHHHHHHHHH-HCTTCEEECCHHHHHHHHT
T ss_pred CEEEHHHCCCCCCCCEEECCCHHHEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH-HCCCEEEEEECCHHHHHHH
T ss_conf 301475657666866174742341152726777699999808998999999999999997-3798399994766665433
Q ss_pred CC-CC-----CCCEEEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCC-CEEEEECCCCCCCCCCCCCCHHHHHHH
Q ss_conf 89-98-----631001026733325763399998596149999764039999-699972899645888893649999956
Q 003509 735 IP-GF-----GFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVP-PVISFNLGSLGFLTSHPVSSYLNSLCF 807 (814)
Q Consensus 735 ~p-~~-----~~i~t~~~~~~~~l~~~~DLVIsLGGDGTILrAArlf~~~~i-PILGINlGrLGFLTei~~eei~e~Le~ 807 (814)
.. .. .....++.....++...+|+||+||||||||+|++.++...+ ||||||+|+|||||++++++++++|++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvlGGDGTlL~aa~~~~~~~vpPiLGIN~G~lGFLt~~~~~~~~~al~~ 167 (388)
T 3afo_A 88 DFKSPLENDPNRPHILYTGPEQDIVNRTDLLVTLGGDGTILHGVSMFGNTQVPPVLAFALGTLGFLSPFDFKEHKKVFQE 167 (388)
T ss_dssp TCCSCGGGCTTSCEEEEECCHHHHHHHCSEEEEEESHHHHHHHHHTTTTSCCCCEEEEECSSCCSSCCEEGGGHHHHHHH
T ss_pred HCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 10222233443333223342233035888899980839999999985056998299997998654775886789999999
Q ss_pred HH
Q ss_conf 20
Q 003509 808 LS 809 (814)
Q Consensus 808 L~ 809 (814)
++
T Consensus 168 il 169 (388)
T 3afo_A 168 VI 169 (388)
T ss_dssp HH
T ss_pred HH
T ss_conf 86
No 4
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A
Probab=1.00 E-value=1 Score=160.24 Aligned_cols=127 Identities=17% Similarity=0.224 Sum_probs=103.7
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf 67883110105886655567975409985999974299999759829998698832475205665875521993999962
Q 003509 244 LFANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIP 323 (814)
Q Consensus 244 ~i~Nfr~V~~~~~~d~~~~~~~e~~LYRSGqiT~edla~Lk~lGIKTVIDLRse~~E~~~~p~~e~~~~~~~GI~yIhIP 323 (814)
...||+.|. + .||||++++++++++|+++||++|||||++. +.. .....+...|++|+++|
T Consensus 4 pp~n~~~v~-------------~-~l~~s~~~~~~d~~~L~~~gi~~Vi~l~~~~-e~~----~~~~~~~~~gi~~~~ip 64 (151)
T 1xri_A 4 PPLNFSMVD-------------N-GIFRSGFPDSANFSFLQTLGLRSIIYLCPEP-YPE----SNLQFLKSNGIRLFQFG 64 (151)
T ss_dssp CCTTCEEEE-------------T-TEEEESCCCHHHHHHHHHHTCSEEEECCSSC-CCH----HHHHHHHHHTCEEEECC
T ss_pred CCCCCCEEC-------------C-CEEECCCCCCCCHHHHHHCCCCEEEECCCCC-CCH----HHHHHHHHCCCEEEECC
T ss_conf 975737557-------------9-8277899681288999878998899788987-673----68899986598599626
Q ss_pred CCCCC----CCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf 68999----9999999999999854999959880846998499999999996799999999988540212
Q 003509 324 VEVRT----APTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTITSNDV 389 (814)
Q Consensus 324 V~d~~----~Ps~e~i~~fl~il~d~~~~PVLVHCtAGKDRTGalvaLlrll~Gvd~eeIi~Dyllsn~~ 389 (814)
+.+.. .++.+++.++++.+.+..++||||||++||||||+++++++.+.|++.++|+++|......
T Consensus 65 i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~vlvHC~aG~~RTg~~~a~~l~~~g~~~~~a~~~~~~~~~~ 134 (151)
T 1xri_A 65 IEGNKEPFVNIPDHKIRMALKVLLDEKNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLTSIFDEYQRFAAA 134 (151)
T ss_dssp CCCCCGGGCCCCHHHHHHHHHHHHCGGGCSEEEECSSSSSHHHHHHHHHHHHTTBCHHHHHHHHHHHHGG
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
T ss_conf 2114576655799999999999975899878988898997899999999998099999999999985588
No 5
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=1.00 E-value=1 Score=150.68 Aligned_cols=101 Identities=22% Similarity=0.341 Sum_probs=85.2
Q ss_pred HHHCCCCC---CCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCCCEEEECCCCCCCCCCCCE
Q ss_conf 73003446---879999936991189999999999821898199992652467521899863100102673332576339
Q 003509 682 QMLMWKTT---PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDF 758 (814)
Q Consensus 682 ~~l~w~~~---~k~VlIV~K~~~e~~e~a~~I~~~L~~~~GieViVe~~~a~~l~~~p~~~~i~t~~~~~~~~l~~~~DL 758 (814)
..+.|... .++|+|+.|+.++ +.++.+||.+ +|+++++++.... ....+|+
T Consensus 18 ~~~~~~~~~~~~mki~iv~~~~~~----~~~l~~~L~~-~g~~v~~~~~~~~---------------------~~~~~Dl 71 (278)
T 1z0s_A 18 ENLYFQGGGGGGMRAAVVYKTDGH----VKRIEEALKR-LEVEVELFNQPSE---------------------ELENFDF 71 (278)
T ss_dssp ------------CEEEEEESSSTT----HHHHHHHHHH-TTCEEEEESSCCG---------------------GGGGSSE
T ss_pred CEEEECCCCCCCEEEEEEECCCHH----HHHHHHHHHH-CCCEEEECCCCCC---------------------CCCCCCE
T ss_conf 037884898663699999689079----9999999998-8999997142124---------------------4579889
Q ss_pred EEEECCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 999859614999976403999969997289964588889364999995620
Q 003509 759 VACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPVSSYLNSLCFLS 809 (814)
Q Consensus 759 VIsLGGDGTILrAArlf~~~~iPILGINlGrLGFLTei~~eei~e~Le~L~ 809 (814)
||+||||||+|+|+|.+... +||+|||+|+|||||+++++++++.|++++
T Consensus 72 vIvlGGDGT~L~aa~~~~~~-~PilGIN~G~lGFLt~~~~~~~~~~l~~l~ 121 (278)
T 1z0s_A 72 IVSVGGDGTILRILQKLKRC-PPIFGINTGRVGLLTHASPENFEVELKKAV 121 (278)
T ss_dssp EEEEECHHHHHHHHTTCSSC-CCEEEEECSSSCTTCCBBTTBCHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHCCC-CCEEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99988878999999985799-849998799876355368789999999998
No 6
>2f46_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria meningitidis Z2491}
Probab=1.00 E-value=1 Score=148.10 Aligned_cols=130 Identities=18% Similarity=0.166 Sum_probs=105.8
Q ss_pred CCCCCEEECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCH--HHHHHHHHHCCCCE-EEEE
Q ss_conf 88311010588665556797540998599997429999975982999869883247520--56658755219939-9996
Q 003509 246 ANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFY--EAAIDDAILSGKVE-LIKI 322 (814)
Q Consensus 246 ~Nfr~V~~~~~~d~~~~~~~e~~LYRSGqiT~edla~Lk~lGIKTVIDLRse~~E~~~~--p~~e~~~~~~~GI~-yIhI 322 (814)
.||+.|. ..||||+++++++++.|+++||++|||||++. |.... ...+...++..||+ |+|+
T Consensus 15 ~n~~~v~--------------~~l~rs~~~~~~d~~~L~~~Gi~~IIdlR~~~-E~~~~p~~~~~~~~~~~~gi~~~~~i 79 (156)
T 2f46_A 15 MAILKLD--------------EHLYISPQLTKADAEQIAQLGIKTIICNRPDR-EEESQPDFAQIKQWLEQAGVTGFHHQ 79 (156)
T ss_dssp CCCEEEE--------------TTEEEESCCCGGGHHHHHHHTCCEEEECSCTT-SSTTCCCHHHHHHHHGGGTCCEEEEC
T ss_pred CCCEECC--------------CCEEECCCCCHHHHHHHHHCCCCEEEECCCCC-CCCCCCCHHHHHHHHHHCCCHHHEEC
T ss_conf 5714526--------------88788089899999999988997999898975-35689867999999998797764577
Q ss_pred ECCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 26899999999999999998549999598808469984999999999967999999999885402122456
Q 003509 323 PVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTITSNDVLLKD 393 (814)
Q Consensus 323 PV~d~~~Ps~e~i~~fl~il~d~~~~PVLVHCtAGKDRTGalvaLlrll~Gvd~eeIi~Dyllsn~~l~~~ 393 (814)
|+.+. .++.+++..|.+++. ..++||||||++|+ |+++++++++...|++.++|++.+......+..-
T Consensus 80 Pv~~~-~~~~~~~~~~~~~l~-~~~~pVlvHC~sG~-Rs~~l~al~l~~~g~~~~~a~~~~~~~g~~l~~~ 147 (156)
T 2f46_A 80 PVTAR-DIQKHDVETFRQLIG-QAEYPVLAYCRTGT-RCSLLWGFRRAAEGMPVDEIIRRAQAAGVNLENF 147 (156)
T ss_dssp CCCTT-TCCHHHHHHHHHHHH-TSCSSEEEECSSSH-HHHHHHHHHHHHTTCCHHHHHHHHHHTTCCCGGG
T ss_pred CCCCC-CCCHHHHHHHHHHHH-HCCCCEEEECCCCC-CHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHH
T ss_conf 45789-999999999999997-08998998899998-7899999999981989999999999829981789
No 7
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=1.00 E-value=1 Score=147.34 Aligned_cols=116 Identities=20% Similarity=0.310 Sum_probs=92.1
Q ss_pred CCCCCEEEEEECCCC-HHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEEECCC
Q ss_conf 446879999936991-1899999999998218981999926524675218998631001026733325763399998596
Q 003509 687 KTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD 765 (814)
Q Consensus 687 ~~~~k~VlIV~K~~~-e~~e~a~~I~~~L~~~~GieViVe~~~a~~l~~~p~~~~i~t~~~~~~~~l~~~~DLVIsLGGD 765 (814)
...+++|+|+.|+.+ ...+.+.++.+||.+ +|+++++++..+..+.. ++. .. .........+|+||++|||
T Consensus 2 ~~~mkki~ii~np~~~~~~~~~~~i~~~l~~-~g~~v~~~~~~~~~~~~-~~~---~~---~~~~~~~~~~D~vi~~GGD 73 (292)
T 2an1_A 2 NNHFKCIGIVGHPRHPTALTTHEMLYRWLCD-QGYEVIVEQQIAHELQL-KNV---PT---GTLAEIGQQADLAVVVGGD 73 (292)
T ss_dssp --CCCEEEEECC-------CHHHHHHHHHHH-TTCEEEEEHHHHHHTTC-SSC---CE---ECHHHHHHHCSEEEECSCH
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHH-CCCEEEEECCHHHHCCC-CCC---CC---CCHHHCCCCCCEEEEECCC
T ss_conf 8768599999759987899999999999998-89999995240322154-555---44---4533416698899998284
Q ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 149999764039999699972899645888893649999956203
Q 003509 766 GVILHASNLFRGAVPPVISFNLGSLGFLTSHPVSSYLNSLCFLSL 810 (814)
Q Consensus 766 GTILrAArlf~~~~iPILGINlGrLGFLTei~~eei~e~Le~L~~ 810 (814)
||+|++++.+...++|+||||+|++||||++.+++++++++.++-
T Consensus 74 GT~l~a~~~~~~~~~P~lGI~~Gt~gfla~~~~~~~~~al~~i~~ 118 (292)
T 2an1_A 74 GNMLGAARTLARYDINVIGINRGNLGFLTDLDPDNALQQLSDVLE 118 (292)
T ss_dssp HHHHHHHHHHTTSSCEEEEBCSSSCCSSCCBCTTSHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 999999998536799899998997663786887899999999986
No 8
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=1.00 E-value=1 Score=146.56 Aligned_cols=121 Identities=26% Similarity=0.363 Sum_probs=91.1
Q ss_pred CCCEEEEEECCCC-HHHHHHHHHHHHHHCCCCEEEEECCCHHHHHH---CCC-CCCCCE-EEECCCCC-CCCCCCCEEEE
Q ss_conf 6879999936991-18999999999982189819999265246752---189-986310-01026733-32576339999
Q 003509 689 TPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFA---RIP-GFGFVQ-TFYLQDTS-DLHERVDFVAC 761 (814)
Q Consensus 689 ~~k~VlIV~K~~~-e~~e~a~~I~~~L~~~~GieViVe~~~a~~l~---~~p-~~~~i~-t~~~~~~~-~l~~~~DLVIs 761 (814)
+|++|+||.|+.+ +..+.+.++.+||.+ +|++++++......+. ..+ .+.... .+...... ...+.+|+||+
T Consensus 3 ~m~ki~iI~n~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~ 81 (307)
T 1u0t_A 3 AHRSVLLVVHTGRDEATETARRVEKVLGD-NKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLV 81 (307)
T ss_dssp --CEEEEEESSSGGGGSHHHHHHHHHHHT-TTCEEEEEC-----------------------------------CCCEEE
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHH-CCCEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 88789999818987899999999999998-89999996343443200223432212346431002431012458899999
Q ss_pred ECCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 8596149999764039999699972899645888893649999956203
Q 003509 762 LGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPVSSYLNSLCFLSL 810 (814)
Q Consensus 762 LGGDGTILrAArlf~~~~iPILGINlGrLGFLTei~~eei~e~Le~L~~ 810 (814)
+|||||+|+|++.+...++|+||||+|++|||+++.+++++++++.++-
T Consensus 82 ~GGDGT~l~a~~~~~~~~~pvlgi~~G~~gfl~~~~~~~~~~~~~~i~~ 130 (307)
T 1u0t_A 82 LGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAVLEHVVA 130 (307)
T ss_dssp EECHHHHHHHHHHHHHHTCCEEEEECSSCCSSCSEEGGGHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 9288999999997446899799996998762763697899999999984
No 9
>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A
Probab=1.00 E-value=1 Score=136.60 Aligned_cols=131 Identities=13% Similarity=0.138 Sum_probs=104.1
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCEEEECCCC-CHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 67883110105886655567975409985999-97429999975982999869883247520566587552199399996
Q 003509 244 LFANWSPVYLSNSKDDIASKDSEVTFCRGGQV-TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKI 322 (814)
Q Consensus 244 ~i~Nfr~V~~~~~~d~~~~~~~e~~LYRSGqi-T~edla~Lk~lGIKTVIDLRse~~E~~~~p~~e~~~~~~~GI~yIhI 322 (814)
...||..|. ++.||||++| ++++++.|+++||++||||+.+. +.. . ....|++|+++
T Consensus 4 pp~~~~~i~-------------~~~l~~~~~p~~~~~~~~L~~~gi~~Vi~l~~~~-~~~-~-------~~~~~~~~~~~ 61 (150)
T 4erc_A 4 QPPNFSWVL-------------PGRLAGLALPRLPAHYQFLLDLGVRHLVSLTERG-PPH-S-------DSCPGLTLHRL 61 (150)
T ss_dssp CCTTCEEEE-------------TTTEEEESCCCSHHHHHHHHHTTEEEEEECSSSC-CTT-G-------GGCTTSEEEEC
T ss_pred CCCCCEEEC-------------CCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCC-CCC-C-------CCCCCCEEEEE
T ss_conf 999977851-------------3753442689977779999987999899827888-875-3-------23588259997
Q ss_pred ECCCCCCCCHHHHHHHHHHHHC--CCCCCEEEECCCCCCHHHHHHHHHHH-HCCCCHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 2689999999999999999854--99995988084699849999999999-67999999999885402122456389
Q 003509 323 PVEVRTAPTMEQVEKFASLVSN--SSKKPLYLHSKEGVWRTYAMVSRWRQ-YMARCASQISGQTITSNDVLLKDSTR 396 (814)
Q Consensus 323 PV~d~~~Ps~e~i~~fl~il~d--~~~~PVLVHCtAGKDRTGalvaLlrl-l~Gvd~eeIi~Dyllsn~~l~~~~~~ 396 (814)
|+.+...|+.+.+..+.+++.+ ..++||||||.+|+||||+++++++. ..|++.++|++...........+...
T Consensus 62 ~~~d~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~~~~~~~a~~~vr~~R~~~~~~~~q 138 (150)
T 4erc_A 62 RIPDFCPPAPDQIDRFVQIVDEANARGEAVGVHCALGFGRTGTMLACYLVKERGLAAGDAIAEIRRLRPGSIETYEQ 138 (150)
T ss_dssp CCCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEECSSSSHHHHHHHHHHHHHHHTCCHHHHHHHHHHHSTTCCCSHHH
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHH
T ss_conf 46888997999999999999999977997999899999889999999999973989999999999878998899999
No 10
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=1.00 E-value=1 Score=133.50 Aligned_cols=90 Identities=17% Similarity=0.162 Sum_probs=78.9
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEEECCCHHHHH
Q ss_conf 79999936991189999999999821898199992652467521899863100102673332576339999859614999
Q 003509 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (814)
Q Consensus 691 k~VlIV~K~~~e~~e~a~~I~~~L~~~~GieViVe~~~a~~l~~~p~~~~i~t~~~~~~~~l~~~~DLVIsLGGDGTILr 770 (814)
++|+|+.|+..+..+.+.++.++|.+ .|+++. ...+|+||++|||||+|+
T Consensus 1 mki~ii~n~~~~~~~~~~~l~~~l~~-~g~~v~-----------------------------~~~~D~vv~lGGDGT~l~ 50 (272)
T 2i2c_A 1 MKYMITSKGDEKSDLLRLNMIAGFGE-YDMEYD-----------------------------DVEPEIVISIGGDGTFLS 50 (272)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTT-SSCEEC-----------------------------SSSCSEEEEEESHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHH-CCCEEC-----------------------------CCCCCEEEEECCCHHHHH
T ss_conf 98999978977899999999999998-778707-----------------------------778889999868599999
Q ss_pred HHHHHCCC--CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 97640399--99699972899645888893649999956203
Q 003509 771 ASNLFRGA--VPPVISFNLGSLGFLTSHPVSSYLNSLCFLSL 810 (814)
Q Consensus 771 AArlf~~~--~iPILGINlGrLGFLTei~~eei~e~Le~L~~ 810 (814)
|++.+... ++||||||+|++|||+++.+++++++++.++-
T Consensus 51 aa~~~~~~~~~~PilGIn~G~lgfl~~~~~~~~~~~l~~l~~ 92 (272)
T 2i2c_A 51 AFHQYEERLDEIAFIGIHTGHLGFYADWRPAEADKLVKLLAK 92 (272)
T ss_dssp HHHHTGGGTTTCEEEEEESSSCCSSCCBCGGGHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 999876537999799996998775772897899999999985
Done!