BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003511
(814 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 262 bits (670), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 147/346 (42%), Positives = 208/346 (60%), Gaps = 14/346 (4%)
Query: 15 LTVAIKCRPLTEREQGRDIVRVKH--DKEVVVLDPDFSKDYLDH---------IQNRTKE 63
+ V ++ RP +E+ +V H DK ++V DP + H I+ + K+
Sbjct: 12 MKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKD 71
Query: 64 KNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDPG 123
+ FD F T +V+ ++ + G N TV AYG+TG+GKT+TM+G+ +PG
Sbjct: 72 LKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPG 131
Query: 124 LMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKSSAHLELREDPMHGIVVA 183
+M L++ ++ + + K + SYLEVYNE I DLL S L +RED G+VV
Sbjct: 132 VMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNSGP-LAVREDTQKGVVVH 190
Query: 184 GLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYCNQVMR 243
GL + S+++IL LL+ GN R T+ N TSSRSHAV +I ++++ KT NQ +R
Sbjct: 191 GLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASINQNVR 250
Query: 244 -GKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRN 302
K+SL+DLAGSERAS + + G + +G NINRSLLAL N INAL ++K ++PYRN
Sbjct: 251 IAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKN-QHIPYRN 309
Query: 303 SKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKI 348
SKLTR+LKD L GN QT+M+A +SP Y T NTLKYA+RAK I
Sbjct: 310 SKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 243 bits (619), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 136/341 (39%), Positives = 202/341 (59%), Gaps = 10/341 (2%)
Query: 12 STTLTVAIKCRPLTERE---QGRDIVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCF 68
S + V ++CRPL RE +I+R+ V++DP + Q + + + F
Sbjct: 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDP--PEQEKSATQAKKVPRTFTF 60
Query: 69 DRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDPGLMVLS 128
D + N ++ A +I V++G N+T+FAYG TG+GKT+TM G K +PG + S
Sbjct: 61 DAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNS 120
Query: 129 LHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKSSAHLELREDPMHGIVVAGLRCI 188
+FD I ++ F V SYLE+YNE I DL+ K++ L L+ED GI V GL
Sbjct: 121 FKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLI-KNNTKLPLKEDKTRGIYVDGLSMH 179
Query: 189 KVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYCNQVMRGKLSL 248
+V +A ++ L++ G + R T+ N TSSRSH++ + ++ + E + GKL+L
Sbjct: 180 RVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNL 239
Query: 249 VDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTRI 308
VDLAGSER S+ + G+ L +GA IN SL AL I+ L +G ++PYR+SKLTR+
Sbjct: 240 VDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKL----VEGATHIPYRDSKLTRL 295
Query: 309 LKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKIK 349
L+D L GNS+T+M A ISP + Y T++TL+YADRAK+IK
Sbjct: 296 LQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIK 336
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 226 bits (577), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/361 (38%), Positives = 207/361 (57%), Gaps = 37/361 (10%)
Query: 10 KKSTTLTVAIKCRP--LTEREQGRDIVRVKHD---KEVVVLDPDFSKDYLDHIQNRTKEK 64
+K + V ++ RP L ER+ + V+ D KEV V + +++ K
Sbjct: 14 EKGKNIQVVVRVRPFNLAERKASAHSI-VESDPVRKEVSVRTGGLA--------DKSSRK 64
Query: 65 NYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKS---- 120
Y FD FG +DVY + ++ ++ V+ G NAT+FAYG TG+GKT+TM G +S
Sbjct: 65 TYTFDMVFGASTKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEE 124
Query: 121 -----DP--GLMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKS---SAHL 170
DP G++ +LH IF+ K N EF V S LE+YNE ++DLL S S L
Sbjct: 125 YCWEEDPLAGIIPRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERL 182
Query: 171 ELREDPMH--GIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEIT 228
++ +DP + G+++ GL I VH+ D++ ++L G ++R T T N SSRSH+V +T
Sbjct: 183 QMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVT 242
Query: 229 VKRRQKTEYCNQVMR-GKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINAL 287
+ ++ T ++++ GKL+LVDLAGSE + + ++ R+ NIN+SLL L I AL
Sbjct: 243 IHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL 302
Query: 288 GKPQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKK 347
+ +VPYR SKLTRIL+D L G ++T ++ATISP TL+TL+YA RAK
Sbjct: 303 VERT----PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 358
Query: 348 I 348
I
Sbjct: 359 I 359
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 225 bits (573), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 135/358 (37%), Positives = 202/358 (56%), Gaps = 31/358 (8%)
Query: 10 KKSTTLTVAIKCRPLTEREQGRDIVRVKHDKEVVVLDPDFSKDYL--DHIQNRTKEKNYC 67
+K + V ++CRP E R +V DP + + + +++ K Y
Sbjct: 16 EKGKNIQVVVRCRPFNLAE------RKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYT 69
Query: 68 FDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKS------- 120
FD FG +DVY + + ++ V+ G N T+FAYG TG+GKT+TM G +S
Sbjct: 70 FDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTW 129
Query: 121 --DP--GLMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKS---SAHLELR 173
DP G++ +LH IF+ K N EF V S LE+YNE ++DLL S S L++
Sbjct: 130 EEDPLAGIIPRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMF 187
Query: 174 EDPMH--GIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKR 231
+DP + G+++ GL I VH+ D++ ++L G ++R T T N SSRSH+V +T+
Sbjct: 188 DDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 247
Query: 232 RQKTEYCNQVMR-GKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKP 290
++ T ++++ GKL+LVDLAGSE + + ++ R+ NIN+SLL L I AL
Sbjct: 248 KETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL--- 304
Query: 291 QKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKI 348
+ +VPYR SKLTRIL+D L G ++T ++ATISP TL+TL+YA RAK I
Sbjct: 305 -VERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 361
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 225 bits (573), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 135/358 (37%), Positives = 202/358 (56%), Gaps = 31/358 (8%)
Query: 10 KKSTTLTVAIKCRPLTEREQGRDIVRVKHDKEVVVLDPDFSKDYL--DHIQNRTKEKNYC 67
+K + V ++CRP E R +V DP + + + +++ K Y
Sbjct: 14 EKGKNIQVVVRCRPFNLAE------RKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYT 67
Query: 68 FDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKS------- 120
FD FG +DVY + + ++ V+ G N T+FAYG TG+GKT+TM G +S
Sbjct: 68 FDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTW 127
Query: 121 --DP--GLMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKS---SAHLELR 173
DP G++ +LH IF+ K N EF V S LE+YNE ++DLL S S L++
Sbjct: 128 EEDPLAGIIPRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMF 185
Query: 174 EDPMH--GIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKR 231
+DP + G+++ GL I VH+ D++ ++L G ++R T T N SSRSH+V +T+
Sbjct: 186 DDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 245
Query: 232 RQKTEYCNQVMR-GKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKP 290
++ T ++++ GKL+LVDLAGSE + + ++ R+ NIN+SLL L I AL +
Sbjct: 246 KETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER 305
Query: 291 QKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKI 348
+VPYR SKLTRIL+D L G ++T ++ATISP TL+TL+YA RAK I
Sbjct: 306 T----PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 224 bits (572), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 135/358 (37%), Positives = 202/358 (56%), Gaps = 31/358 (8%)
Query: 10 KKSTTLTVAIKCRPLTEREQGRDIVRVKHDKEVVVLDPDFSKDYL--DHIQNRTKEKNYC 67
+K + V ++CRP E R +V DP + + + +++ K Y
Sbjct: 13 EKGKNIQVVVRCRPFNLAE------RKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYT 66
Query: 68 FDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKS------- 120
FD FG +DVY + + ++ V+ G N T+FAYG TG+GKT+TM G +S
Sbjct: 67 FDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTW 126
Query: 121 --DP--GLMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKS---SAHLELR 173
DP G++ +LH IF+ K N EF V S LE+YNE ++DLL S S L++
Sbjct: 127 EEDPLAGIIPRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMF 184
Query: 174 EDPMH--GIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKR 231
+DP + G+++ GL I VH+ D++ ++L G ++R T T N SSRSH+V +T+
Sbjct: 185 DDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 244
Query: 232 RQKTEYCNQVMR-GKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKP 290
++ T ++++ GKL+LVDLAGSE + + ++ R+ NIN+SLL L I AL +
Sbjct: 245 KETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER 304
Query: 291 QKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKI 348
+VPYR SKLTRIL+D L G ++T ++ATISP TL+TL+YA RAK I
Sbjct: 305 T----PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 358
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 224 bits (572), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 135/358 (37%), Positives = 202/358 (56%), Gaps = 31/358 (8%)
Query: 10 KKSTTLTVAIKCRPLTEREQGRDIVRVKHDKEVVVLDPDFSKDYL--DHIQNRTKEKNYC 67
+K + V ++CRP E R +V DP + + + +++ K Y
Sbjct: 14 EKGKNIQVVVRCRPFNLAE------RKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYT 67
Query: 68 FDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKS------- 120
FD FG +DVY + + ++ V+ G N T+FAYG TG+GKT+TM G +S
Sbjct: 68 FDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTW 127
Query: 121 --DP--GLMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKS---SAHLELR 173
DP G++ +LH IF+ K N EF V S LE+YNE ++DLL S S L++
Sbjct: 128 EEDPLAGIIPRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMF 185
Query: 174 EDPMH--GIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKR 231
+DP + G+++ GL I VH+ D++ ++L G ++R T T N SSRSH+V +T+
Sbjct: 186 DDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 245
Query: 232 RQKTEYCNQVMR-GKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKP 290
++ T ++++ GKL+LVDLAGSE + + ++ R+ NIN+SLL L I AL +
Sbjct: 246 KETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER 305
Query: 291 QKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKI 348
+VPYR SKLTRIL+D L G ++T ++ATISP TL+TL+YA RAK I
Sbjct: 306 T----PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 224 bits (572), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 135/358 (37%), Positives = 202/358 (56%), Gaps = 31/358 (8%)
Query: 10 KKSTTLTVAIKCRPLTEREQGRDIVRVKHDKEVVVLDPDFSKDYL--DHIQNRTKEKNYC 67
+K + V ++CRP E R +V DP + + + +++ K Y
Sbjct: 14 EKGKNIQVVVRCRPFNLAE------RKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYT 67
Query: 68 FDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKS------- 120
FD FG +DVY + + ++ V+ G N T+FAYG TG+GKT+TM G +S
Sbjct: 68 FDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTW 127
Query: 121 --DP--GLMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKS---SAHLELR 173
DP G++ +LH IF+ K N EF V S LE+YNE ++DLL S S L++
Sbjct: 128 EEDPLDGIIPRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMF 185
Query: 174 EDPMH--GIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKR 231
+DP + G+++ GL I VH+ D++ ++L G ++R T T N SSRSH+V +T+
Sbjct: 186 DDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 245
Query: 232 RQKTEYCNQVMR-GKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKP 290
++ T ++++ GKL+LVDLAGSE + + ++ R+ NIN+SLL L I AL +
Sbjct: 246 KETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER 305
Query: 291 QKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKI 348
+VPYR SKLTRIL+D L G ++T ++ATISP TL+TL+YA RAK I
Sbjct: 306 T----PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 224 bits (572), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 135/358 (37%), Positives = 202/358 (56%), Gaps = 31/358 (8%)
Query: 10 KKSTTLTVAIKCRPLTEREQGRDIVRVKHDKEVVVLDPDFSKDYL--DHIQNRTKEKNYC 67
+K + V ++CRP E R +V DP + + + +++ K Y
Sbjct: 5 EKGKNIQVVVRCRPFNLAE------RKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYT 58
Query: 68 FDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKS------- 120
FD FG +DVY + + ++ V+ G N T+FAYG TG+GKT+TM G +S
Sbjct: 59 FDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTW 118
Query: 121 --DP--GLMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKS---SAHLELR 173
DP G++ +LH IF+ K N EF V S LE+YNE ++DLL S S L++
Sbjct: 119 EEDPLAGIIPRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMF 176
Query: 174 EDPMH--GIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKR 231
+DP + G+++ GL I VH+ D++ ++L G ++R T T N SSRSH+V +T+
Sbjct: 177 DDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 236
Query: 232 RQKTEYCNQVMR-GKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKP 290
++ T ++++ GKL+LVDLAGSE + + ++ R+ NIN+SLL L I AL +
Sbjct: 237 KETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER 296
Query: 291 QKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKI 348
+VPYR SKLTRIL+D L G ++T ++ATISP TL+TL+YA RAK I
Sbjct: 297 T----PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 350
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 224 bits (570), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/365 (37%), Positives = 203/365 (55%), Gaps = 21/365 (5%)
Query: 12 STTLTVAIKCRPLTEREQGRDIVRVKHDKEVVVLDPDFSKDYLDHIQNRTKE--KNYCFD 69
S ++ V ++CRP+ +E+ +DK VV +D + + + + E K + FD
Sbjct: 20 SESVRVVVRCRPMNGKEKA-----ASYDK-VVDVDVKLGQVSVKNPKGTAHEMPKTFTFD 73
Query: 70 RAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDP---GLMV 126
+ ++Y ++ V+QG N T+FAYG TG+GKTYTM G + DP G++
Sbjct: 74 AVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIP 133
Query: 127 LSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEK-SSAHLELREDPMHGIVVAGL 185
S IF I + +N ++ V SYLE+Y E I DLL K + LEL+E P G+ V L
Sbjct: 134 NSFDHIFTHISRSQNQ-QYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDTGVYVKDL 192
Query: 186 RCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVK-RRQKTEYCNQVMRG 244
S +I ++N+GN R T N SSRSHA+ IT++ + N + G
Sbjct: 193 SSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVG 252
Query: 245 KLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINAL--GKPQKKGLAYVPYRN 302
KL+LVDLAGSER ++ + G++L++ IN SL AL N I+AL GK ++PYR+
Sbjct: 253 KLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKS-----THIPYRD 307
Query: 303 SKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKIKTHIQKNIGSIDTH 362
SKLTR+L+D L GN++TVMVA + P TL TL+YA+RAK IK + N D
Sbjct: 308 SKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDAL 367
Query: 363 VSDYQ 367
+ ++Q
Sbjct: 368 LREFQ 372
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 224 bits (570), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 134/345 (38%), Positives = 197/345 (57%), Gaps = 30/345 (8%)
Query: 17 VAIKCRPLTEREQGRDIVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGPGC 76
VA++ RPL +E + + + ++P + L +++++ F
Sbjct: 15 VALRVRPLLPKEL------LHGHQSCLQVEPGLGRVTLG------RDRHFGFHVVLAEDA 62
Query: 77 TNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKS-------DPGLMVLSL 129
VY AC+ ++ +G NATVFAYG TGSGKTYTM G S + G++ ++
Sbjct: 63 GQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM-GEASVASLLEDEQGIVPRAM 121
Query: 130 HTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKSSAH--LELREDPMHGIVVAGLRC 187
F LI ++ D V SYLEVY E DLLE +A ++LRED +V+ G++
Sbjct: 122 AEAFKLIDENDLLDCL-VHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKE 180
Query: 188 IKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTE------YCNQV 241
+ V D++L LL +GN+ R T T N SSRSH V +T+++R + Q+
Sbjct: 181 VDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQL 240
Query: 242 MRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYR 301
+ K VDLAGSER + S G++L++ IN SLLAL N I+ALG PQ++G +++PYR
Sbjct: 241 LVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRG-SHIPYR 299
Query: 302 NSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAK 346
+SK+TRILKD L GN++TVM+A +SP S + TLNTL YA RA+
Sbjct: 300 DSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 223 bits (568), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 134/353 (37%), Positives = 200/353 (56%), Gaps = 31/353 (8%)
Query: 15 LTVAIKCRPLTEREQGRDIVRVKHDKEVVVLDPDFSKDYL--DHIQNRTKEKNYCFDRAF 72
+ V ++CRP E R +V DP + + + +++ K Y FD F
Sbjct: 4 IQVVVRCRPFNLAE------RKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVF 57
Query: 73 GPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKS---------DP- 122
G +DVY + + ++ V+ G N T+FAYG TG+GKT+TM G +S DP
Sbjct: 58 GASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPL 117
Query: 123 -GLMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKS---SAHLELREDPMH 178
G++ +LH IF+ K N EF V S LE+YNE ++DLL S S L++ +DP +
Sbjct: 118 AGIIPRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRN 175
Query: 179 --GIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTE 236
G+++ GL I VH+ D++ ++L G ++R T T N SSRSH+V +T+ ++ T
Sbjct: 176 KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI 235
Query: 237 YCNQVMR-GKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGL 295
++++ GKL+LVDLAGSE + + ++ R+ NIN+SLL L I AL +
Sbjct: 236 DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERT---- 291
Query: 296 AYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKI 348
+VPYR SKLTRIL+D L G ++T ++ATISP TL+TL+YA RAK I
Sbjct: 292 PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 344
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 223 bits (567), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 133/358 (37%), Positives = 200/358 (55%), Gaps = 31/358 (8%)
Query: 10 KKSTTLTVAIKCRPLTEREQGRDIVRVKHDKEVVVLDPDFSKDYL--DHIQNRTKEKNYC 67
+K + V ++CRP E R +V DP + + + +++ K Y
Sbjct: 14 EKGKNIQVVVRCRPFNLAE------RKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYT 67
Query: 68 FDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSD------ 121
FD FG +DVY + + ++ V+ G N T+FAYG TG+GKT+TM G +S
Sbjct: 68 FDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTW 127
Query: 122 -----PGLMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKS---SAHLELR 173
G++ +LH IF+ K N EF V S LE+YNE ++DLL S S L++
Sbjct: 128 EEVPLAGIIPRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMF 185
Query: 174 EDPMH--GIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKR 231
+DP + G+++ GL I VH+ D++ ++L G ++R T T N SSRSH+V +T+
Sbjct: 186 DDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 245
Query: 232 RQKTEYCNQVMR-GKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKP 290
++ T ++++ GKL+LVDLAGSE + + ++ R+ NIN+SLL L I AL +
Sbjct: 246 KETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER 305
Query: 291 QKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKI 348
+VPYR SKLTRIL+D L G ++T ++ATISP TL+TL+YA RAK I
Sbjct: 306 T----PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 219 bits (558), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 134/345 (38%), Positives = 194/345 (56%), Gaps = 30/345 (8%)
Query: 17 VAIKCRPLTEREQGRDIVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGPGC 76
VA++ RPL +E + + + ++P + L +++++ F
Sbjct: 15 VALRVRPLLPKEL------LHGHQSCLQVEPGLGRVTLG------RDRHFGFHVVLAEDA 62
Query: 77 TNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKS-------DPGLMVLSL 129
VY AC+ ++ +G NATVFAYG TGSGKTYTM G S + G++ ++
Sbjct: 63 GQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM-GEASVASLLEDEQGIVPRAM 121
Query: 130 HTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKSSAH--LELREDPMHGIVVAGLRC 187
F LI ++ D V SYLEVY E DLLE +A ++LRED +V+ G++
Sbjct: 122 AEAFKLIDENDLLDCL-VHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKE 180
Query: 188 IKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTE------YCNQV 241
+ V D++L LL +GN+ R T T N SSRSH V +T+K+R + Q+
Sbjct: 181 VDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRPAPGQL 240
Query: 242 MRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYR 301
+ K VDLAGSER + S G+ ++ IN SLLAL N I+ALG PQ++G + +PYR
Sbjct: 241 LVSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRG-SNIPYR 299
Query: 302 NSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAK 346
+SK+TRILKD L GN++TVM+A +SP S + TLNTL YA RA+
Sbjct: 300 DSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 217 bits (553), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 142/368 (38%), Positives = 202/368 (54%), Gaps = 35/368 (9%)
Query: 7 PATKKSTTLTVAIKCRPLTEREQ---GRDIVRVKHDKEVVVLDPDFSKDYLDHIQNRTKE 63
P K + + V ++ RPL RE+ ++V V +EVV H +
Sbjct: 17 PQKKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVT----------RHTLDSKLT 66
Query: 64 KNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTK---- 119
K + FDR+FGP DVY+ +S +I V+ G N TVFAYG TG+GKT+TMVG +
Sbjct: 67 KKFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAEL 126
Query: 120 -------SDPGLMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEK-SSAHLE 171
SD G++ +L +FD ++ + E+ + SYLE+YNE + DLL + +
Sbjct: 127 KSSWEDDSDIGIIPRALSHLFDELRMMEV--EYTMRISYLELYNEELCDLLSTDDTTKIR 184
Query: 172 LREDPMH--GIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITV 229
+ +D +++ GL I VHS D + +LL G RRKT T N SSRSH V I V
Sbjct: 185 IFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVV 244
Query: 230 KRRQKTEYCNQVMR-GKLSLVDLAGSERASEA-NSGGQKLRDGANINRSLLALANCINAL 287
R+ +++ GKL+LVDLAGSE S+A N G ++R+ NIN+SLL L I AL
Sbjct: 245 HIRENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITAL 304
Query: 288 GKPQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKK 347
+VPYR SKLTR+L++ L G ++T ++ATISP TL+TL+YA RAK
Sbjct: 305 VDRA----PHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKN 360
Query: 348 IKTHIQKN 355
I+ + N
Sbjct: 361 IQNKPEVN 368
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 215 bits (547), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 137/386 (35%), Positives = 209/386 (54%), Gaps = 41/386 (10%)
Query: 12 STTLTVAIKCRPLTEREQGRDIVRVKHDKEVVVLDPDFSKDYLDHIQNRTKE--KNYCFD 69
S L V +CRPL+ +E+ H+ +++ +D + L + + E K + FD
Sbjct: 20 SEALKVVARCRPLSRKEEA-----AGHE-QILTMDVKLGQVTLRNPRAAPGELPKTFTFD 73
Query: 70 RAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDP---GLMV 126
+ D+Y + +I V+QG N TVFAYG TG+GKTYTM GT +P G++
Sbjct: 74 AVYDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELRGVIP 133
Query: 127 LSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKSSA-HLELREDPMHGIVVAGL 185
+ IF I + +N ++ V SYLE+Y E I DLL K LEL+E+P G+ + L
Sbjct: 134 NAFEHIFTHISRSQN-QQYLVRASYLEIYQEEIRDLLSKEPGKRLELKENPETGVYIKDL 192
Query: 186 RCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVK-RRQKTEYCNQVMRG 244
+ +I ++NLGN R +T N SSRSHA+ ITV+ + ++ + + G
Sbjct: 193 SSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQDHIRVG 252
Query: 245 KLSLVDLAGSERASEAN---SGG---------------------QKLRDGANINRSLLAL 280
KL+LVDLAGSER ++A +GG ++ ++ + IN SL AL
Sbjct: 253 KLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSAL 312
Query: 281 ANCINALGKPQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLK 340
N I AL + ++PYR+SKLTR+L+D L GN++T+MVAT+ P Y +L+TL+
Sbjct: 313 GNVIAALAGNRS---THIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLR 369
Query: 341 YADRAKKIKTHIQKNIGSIDTHVSDY 366
+A+RAK IK + N DT + ++
Sbjct: 370 FANRAKNIKNKPRVNEDPKDTLLREF 395
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 213 bits (543), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 142/358 (39%), Positives = 203/358 (56%), Gaps = 38/358 (10%)
Query: 15 LTVAIKCRPLTERE---QGRDIVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRA 71
+ VA++ RP+ RE + +V V +K V+L+P + L R + K + +D
Sbjct: 3 VKVAVRIRPMNRRETDLHTKCVVDVDANK--VILNPVNTN--LSKGDARGQPKVFAYDHC 58
Query: 72 FGPGCTNL-------DVYTACIS-SVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDPG 123
F ++ D+ C+ +++ G NA +FAYG TGSGK+YTM+GT PG
Sbjct: 59 FWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPG 118
Query: 124 LMVLSLHTIFDLIKKDKNSDE-FEVSCSYLEVYNEVIYDLLEKSSAH--LELREDPMHGI 180
L+ +F+ +K++N ++ F+V SY+E+YNE + DLL+ + L++RE + G
Sbjct: 119 LIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGP 178
Query: 181 VVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEIT-------VKRRQ 233
V GL + V S I L++ GN R T N SSRSHAV +IT VK
Sbjct: 179 YVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGT 238
Query: 234 KTEYCNQVMRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINAL-----G 288
E GKLSLVDLAGSERA++ + G +L++G+NIN+SL L I+AL G
Sbjct: 239 SGEKV-----GKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAG 293
Query: 289 KPQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAK 346
K + K +VPYR+S LT +LKD L GNS+T MVAT+SP Y TL+TL+YADRAK
Sbjct: 294 KNKNK---FVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 209 bits (533), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 130/350 (37%), Positives = 204/350 (58%), Gaps = 30/350 (8%)
Query: 15 LTVAIKCRPLTEREQGR---DIVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRA 71
+ V ++ RPL ++E + D++ + ++V +P D +++N+ +CFD A
Sbjct: 53 ICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQA----FCFDFA 108
Query: 72 FGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKS------DPGLM 125
F +N VY ++ + +G AT FAYG TGSGKT+TM G S G+
Sbjct: 109 FDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIY 168
Query: 126 VLSLHTIFDLIKKDKNSDE--FEVSCSYLEVYNEVIYDLLEKSSAHLELREDPMHGIVVA 183
++ +F L+K + EV ++ E+YN ++DLL K A L + ED + V
Sbjct: 169 AMASRDVF-LLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNK-KAKLRVLEDGKQQVQVV 226
Query: 184 GLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYCNQVMR 243
GL+ V+SAD +++++++G++ R + T AN SSRSHA +I ++ + + M
Sbjct: 227 GLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGR-------MH 279
Query: 244 GKLSLVDLAGSERASEANSGGQKLR-DGANINRSLLALANCINALGKPQKKGLAYVPYRN 302
GK SLVDLAG+ER ++ +S ++ R +GA IN+SLLAL CI ALG+ + A+ P+R
Sbjct: 280 GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK----AHTPFRE 335
Query: 303 SKLTRILKDGLSG-NSQTVMVATISPVDSQYHHTLNTLKYADRAKKIKTH 351
SKLT++L+D G NS+T M+ATISP S +TLNTL+YADR K++ H
Sbjct: 336 SKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPH 385
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 209 bits (532), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 200/346 (57%), Gaps = 28/346 (8%)
Query: 15 LTVAIKCRPLTEREQGR---DIVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRA 71
+ V ++ RPL ++E + D++ V ++V +P D +++N+ +CFD A
Sbjct: 73 ICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQA----FCFDFA 128
Query: 72 FGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKS------DPGLM 125
F +N VY ++ + +G AT FAYG TGSGKT+TM G S G+
Sbjct: 129 FDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIY 188
Query: 126 VLSLHTIFDLIKKDKNSD-EFEVSCSYLEVYNEVIYDLLEKSSAHLELREDPMHGIVVAG 184
++ +F L + + + EV ++ E+YN ++DLL K A L + ED + V G
Sbjct: 189 AMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNK-KAKLRVLEDSRQQVQVVG 247
Query: 185 LRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYCNQVMRG 244
L+ V AD +++++N+G++ R + T AN SSRSHA +I ++ + + + G
Sbjct: 248 LQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGR-------LHG 300
Query: 245 KLSLVDLAGSERASEANSGGQKLR-DGANINRSLLALANCINALGKPQKKGLAYVPYRNS 303
K SLVDLAG+ER ++ +S ++ R +GA IN+SLLAL CI ALG+ + A+ P+R S
Sbjct: 301 KFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK----AHTPFRES 356
Query: 304 KLTRILKDGLSG-NSQTVMVATISPVDSQYHHTLNTLKYADRAKKI 348
KLT++L+D G NS+T M+A ISP S +TLNTL+YADR K++
Sbjct: 357 KLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 402
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 208 bits (530), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 127/340 (37%), Positives = 197/340 (57%), Gaps = 21/340 (6%)
Query: 15 LTVAIKCRPLTEREQGRDIVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGP 74
+ V + RP+T +E G V D D D + H+ ++ K ++ D+ F P
Sbjct: 6 IRVIARVRPVT-KEDGEG----PEATNAVTFDAD--DDSIIHLLHKGKPVSFELDKVFSP 58
Query: 75 GCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTIFD 134
+ DV+ + ++++ + G N +FAYG TG+GKTYTM GT +PG+ +L +F
Sbjct: 59 QASQQDVFQE-VQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFS 117
Query: 135 LIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKS-SAHLELR--EDPMHGIVVAGLRCIKVH 191
+++ + E+ ++ S E+YNEV+ DLL K LE+R D + V GL +V
Sbjct: 118 EVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGLTEFQVQ 177
Query: 192 SADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYCNQVMR--GKLSLV 249
S D I ++ G++ R TE T N SSRSHA+L +TV+ C+ +R GKL+LV
Sbjct: 178 SVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVD----CSTGLRTTGKLNLV 233
Query: 250 DLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTRIL 309
DLAGSER ++ + G +LR+ +IN+SL AL + I AL Q +VP+RNSKLT +L
Sbjct: 234 DLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQ----GHVPFRNSKLTYLL 289
Query: 310 KDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKIK 349
+D LSG+S+T+MV +SPV+ TL +LK+A+R + ++
Sbjct: 290 QDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVE 329
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 207 bits (527), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 200/346 (57%), Gaps = 28/346 (8%)
Query: 15 LTVAIKCRPLTEREQGR---DIVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRA 71
+ V ++ RPL ++E + D++ V ++V +P D +++N+ +CFD A
Sbjct: 1 ICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQA----FCFDFA 56
Query: 72 FGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKS------DPGLM 125
F +N VY ++ + +G AT FAYG TGSGKT+TM G S G+
Sbjct: 57 FDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIY 116
Query: 126 VLSLHTIFDLIKKDKNSD-EFEVSCSYLEVYNEVIYDLLEKSSAHLELREDPMHGIVVAG 184
++ +F L + + + EV ++ E+YN ++DLL K A L + ED + V G
Sbjct: 117 AMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNK-KAKLRVLEDSRQQVQVVG 175
Query: 185 LRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYCNQVMRG 244
L+ V AD +++++N+G++ R + T AN SSRSHA +I ++ + + + G
Sbjct: 176 LQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGR-------LHG 228
Query: 245 KLSLVDLAGSERASEANSGGQKLR-DGANINRSLLALANCINALGKPQKKGLAYVPYRNS 303
K SLVDLAG+ER ++ +S ++ R +GA IN+SLLAL CI ALG+ + A+ P+R S
Sbjct: 229 KFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK----AHTPFRES 284
Query: 304 KLTRILKDGLSG-NSQTVMVATISPVDSQYHHTLNTLKYADRAKKI 348
KLT++L+D G NS+T M+A ISP S +TLNTL+YADR K++
Sbjct: 285 KLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 330
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 202 bits (515), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 126/346 (36%), Positives = 202/346 (58%), Gaps = 28/346 (8%)
Query: 15 LTVAIKCRPLTERE---QGRDIVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRA 71
+ V ++ RPL ++E + D++ + V+V +P D +++N+T + FD A
Sbjct: 91 ICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLENQT----FRFDYA 146
Query: 72 FGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKS------DPGLM 125
F N VY ++ + + AT FAYG TGSGKT+TM G S G+
Sbjct: 147 FDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQDCSKGIY 206
Query: 126 VLSLHTIFDLIKK-DKNSDEFEVSCSYLEVYNEVIYDLLEKSSAHLELREDPMHGIVVAG 184
L+ +F ++KK + E +V ++ E+Y+ ++DLL + + L + ED + V G
Sbjct: 207 ALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNRKT-KLRVLEDGKQQVQVVG 265
Query: 185 LRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYCNQVMRG 244
L+ +V + +L+L+++GNS R + T AN SSRSHAV +I ++R+ K + G
Sbjct: 266 LQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK-------LHG 318
Query: 245 KLSLVDLAGSERASEANSGGQKLR-DGANINRSLLALANCINALGKPQKKGLAYVPYRNS 303
K SL+DLAG+ER ++ +S ++ R +GA IN+SLLAL CI ALG+ + + P+R S
Sbjct: 319 KFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNK----PHTPFRAS 374
Query: 304 KLTRILKDGLSG-NSQTVMVATISPVDSQYHHTLNTLKYADRAKKI 348
KLT++L+D G NS+T M+ATISP + +TLNTL+YA+R K++
Sbjct: 375 KLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 134/375 (35%), Positives = 195/375 (52%), Gaps = 35/375 (9%)
Query: 7 PATKKSTTLTVAIKCRPLTEREQGRD---IVRVKHDKEVVVLDPDFSKDYLDHIQNRTKE 63
P ++ VA++ RP RE RD I+++ +V +P Q +
Sbjct: 14 PINMPGASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIV-NPK---------QPKETP 63
Query: 64 KNYCFDRAFGPGCTNLD--------VYTACISSVISGVVQGLNATVFAYGSTGSGKTYTM 115
K++ FD ++ + D VY ++ +G N +FAYG TG+GK+YTM
Sbjct: 64 KSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 123
Query: 116 VGT--KSDPGLMVLSLHTIFDLIKKDKNSD-EFEVSCSYLEVYNEVIYDLLE-KSSAHLE 171
+G K G++ +F I N + + V SY+E+Y E + DLL K+ +L
Sbjct: 124 MGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLR 183
Query: 172 LREDPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEI--TV 229
+RE P+ G V L + V S + I +L++ GN R T N TSSRSHAV I T
Sbjct: 184 VREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQ 243
Query: 230 KRRQKTEYCNQVMRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGK 289
KR K+SLVDLAGSERA + G +L++GANIN+SL L I+AL +
Sbjct: 244 KRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 303
Query: 290 ----PQKKGLA----YVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKY 341
P K ++PYR+S LT +L++ L GNS+T MVA +SP D Y TL+TL+Y
Sbjct: 304 MDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRY 363
Query: 342 ADRAKKIKTHIQKNI 356
ADRAK+I+ + N+
Sbjct: 364 ADRAKQIRNTVSVNL 378
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 201 bits (510), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/329 (38%), Positives = 178/329 (54%), Gaps = 37/329 (11%)
Query: 62 KEKNYCFDRAFGPG-------CTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYT 114
+EK++ FD++F T VY + + +G + +FAYG TGSGK+YT
Sbjct: 94 EEKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYT 153
Query: 115 MVGTKSDPGLMVLSLHTIFDLIKKDKNSD---EFEVSCSYLEVYNEVIYDLL-----EKS 166
M+GT PGL+ + +F I ++ + V SY EVYNE + DLL K
Sbjct: 154 MMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKP 213
Query: 167 SAHLELREDPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLE 226
+L++RE P G V L + V ++I+ + +G+ R +T+ N TSSRSHAV
Sbjct: 214 PYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFT 273
Query: 227 ITVKR-RQKTEYCNQVMRG-KLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCI 284
I +K+ E + R ++ LVDLAGSERA + GQ+LR+G+NIN+SL L I
Sbjct: 274 IMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVI 333
Query: 285 NALGKPQ----------KKGL--------AYVPYRNSKLTRILKDGLSGNSQTVMVATIS 326
AL P+ K G + VPYR+S LT +LKD L GNS+T M+A IS
Sbjct: 334 AALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACIS 393
Query: 327 PVDSQYHHTLNTLKYADRAKKIKTHIQKN 355
P D Y TL+TL+YAD+AK+I+T N
Sbjct: 394 PTD--YDETLSTLRYADQAKRIRTRAVVN 420
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 199 bits (506), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 133/367 (36%), Positives = 194/367 (52%), Gaps = 35/367 (9%)
Query: 14 TLTVAIKCRPLTEREQGRD---IVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDR 70
++ VA++ RP RE RD I+++ +V +P Q + K++ FD
Sbjct: 5 SVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIV-NPK---------QPKETPKSFSFDY 54
Query: 71 AFGPGCTNLD--------VYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGT--KS 120
++ + D VY ++ +G N +FAYG TG+GK+YTM+G K
Sbjct: 55 SYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKD 114
Query: 121 DPGLMVLSLHTIFDLIKKDKNSD-EFEVSCSYLEVYNEVIYDLLE-KSSAHLELREDPMH 178
G++ +F I N + + V SY+E+Y E + DLL K+ +L +RE P+
Sbjct: 115 QQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLL 174
Query: 179 GIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEI--TVKRRQKTE 236
G V L + V S + I +L++ GN R T N TSSRSHAV I T KR
Sbjct: 175 GPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAET 234
Query: 237 YCNQVMRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGK------- 289
K+SLVDLAGSERA + G +L++GANIN+SL L I+AL +
Sbjct: 235 NITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNK 294
Query: 290 -PQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKI 348
+KK ++PYR+S LT +L++ L GNS+T MVA +SP D Y TL+TL+YADRAK+I
Sbjct: 295 NKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
Query: 349 KTHIQKN 355
+ + N
Sbjct: 355 RNTVSVN 361
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 199 bits (505), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 133/367 (36%), Positives = 194/367 (52%), Gaps = 35/367 (9%)
Query: 14 TLTVAIKCRPLTEREQGRD---IVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDR 70
++ VA++ RP RE RD I+++ +V +P Q + K++ FD
Sbjct: 5 SVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIV-NPK---------QPKETPKSFSFDY 54
Query: 71 AFGPGCTNLD--------VYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGT--KS 120
++ + D VY ++ +G N +FAYG TG+GK+YTM+G K
Sbjct: 55 SYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKD 114
Query: 121 DPGLMVLSLHTIFDLIKKDKNSD-EFEVSCSYLEVYNEVIYDLLE-KSSAHLELREDPMH 178
G++ +F I N + + V SY+E+Y E + DLL K+ +L +RE P+
Sbjct: 115 QQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLL 174
Query: 179 GIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEI--TVKRRQKTE 236
G V L + V S + I +L++ GN R T N TSSRSHAV I T KR
Sbjct: 175 GPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAET 234
Query: 237 YCNQVMRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGK------- 289
K+SLVDLAGSERA + G +L++GANIN+SL L I+AL +
Sbjct: 235 NITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNK 294
Query: 290 -PQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKI 348
+KK ++PYR+S LT +L++ L GNS+T MVA +SP D Y TL+TL+YADRAK+I
Sbjct: 295 NKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
Query: 349 KTHIQKN 355
+ + N
Sbjct: 355 RNTVSVN 361
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 199 bits (505), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 133/367 (36%), Positives = 194/367 (52%), Gaps = 35/367 (9%)
Query: 14 TLTVAIKCRPLTEREQGRD---IVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDR 70
++ VA++ RP RE RD I+++ +V +P Q + K++ FD
Sbjct: 5 SVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIV-NPK---------QPKETPKSFSFDY 54
Query: 71 AFGPGCTNLD--------VYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGT--KS 120
++ + D VY ++ +G N +FAYG TG+GK+YTM+G K
Sbjct: 55 SYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKD 114
Query: 121 DPGLMVLSLHTIFDLIKKDKNSD-EFEVSCSYLEVYNEVIYDLLE-KSSAHLELREDPMH 178
G++ +F I N + + V SY+E+Y E + DLL K+ +L +RE P+
Sbjct: 115 QQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLL 174
Query: 179 GIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEI--TVKRRQKTE 236
G V L + V S + I +L++ GN R T N TSSRSHAV I T KR
Sbjct: 175 GPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAET 234
Query: 237 YCNQVMRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGK------- 289
K+SLVDLAGSERA + G +L++GANIN+SL L I+AL +
Sbjct: 235 NITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNK 294
Query: 290 -PQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKI 348
+KK ++PYR+S LT +L++ L GNS+T MVA +SP D Y TL+TL+YADRAK+I
Sbjct: 295 NKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
Query: 349 KTHIQKN 355
+ + N
Sbjct: 355 RNTVSVN 361
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 198 bits (504), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 128/343 (37%), Positives = 188/343 (54%), Gaps = 27/343 (7%)
Query: 15 LTVAIKCRPLTEREQGRD---IVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRA 71
+ V ++ RPL RE+ V K D V+ + D K++ FDR
Sbjct: 6 VAVCVRVRPLNSREESLGETAQVYWKTDNNVI-----YQVD---------GSKSFNFDRV 51
Query: 72 FGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHT 131
F T +VY + +I +QG N T+FAYG T SGKTYTM+G++ G++ ++H
Sbjct: 52 FHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHD 111
Query: 132 IFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLL--EKSSAHLELREDPMHGIVVAGLRCIK 189
IF IKK + EF + SY+E+YNE I DLL + L +RED + VA L
Sbjct: 112 IFQKIKKFPDR-EFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEV 170
Query: 190 VHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYCN---QVMRGKL 246
V++++ L+ + G R T+ N SSRSH + + ++ R+K E N V L
Sbjct: 171 VYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHL 230
Query: 247 SLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLT 306
+LVDLAGSERA++ + G +L++G NINRSL L I L Q G ++ YR+SKLT
Sbjct: 231 NLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGG--FINYRDSKLT 288
Query: 307 RILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKIK 349
RIL++ L GN++T ++ TI+PV + TL L++A AK +K
Sbjct: 289 RILQNSLGGNAKTRIICTITPVS--FDETLTALQFASTAKYMK 329
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 129/348 (37%), Positives = 179/348 (51%), Gaps = 29/348 (8%)
Query: 15 LTVAIKCRPLTEREQGRD---IVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRA 71
+ V + RPL E E R I + + + VV+ K Y FDR
Sbjct: 9 IKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVI-----------------ASKPYAFDRV 51
Query: 72 FGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDP---GLMVLS 128
F + VY C ++ V++G N T+FAYG T SGKT+TM G DP G++
Sbjct: 52 FQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRI 111
Query: 129 LHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKSSAHLELREDPMHGIVVAGLRCI 188
+ IF+ I + EF + SY E+Y + I DLL+ S +L + ED V G
Sbjct: 112 VQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTER 171
Query: 189 KVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYCNQVMRGKLSL 248
V S D++++ ++ G S R T N SSRSH++ I VK Q+ Q + GKL L
Sbjct: 172 FVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVK--QENTQTEQKLSGKLYL 229
Query: 249 VDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTRI 308
VDLAGSE+ S+ + G L + NIN+SL AL N I+AL +G YVPYR+SK+TRI
Sbjct: 230 VDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALA----EGSTYVPYRDSKMTRI 285
Query: 309 LKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKIKTHIQKNI 356
L+D L GN +T +V SP T +TL + RAK IK + N+
Sbjct: 286 LQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVNV 333
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/303 (37%), Positives = 168/303 (55%), Gaps = 9/303 (2%)
Query: 57 IQNRTKEKNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMV 116
+ ++ + ++ FDR F C D++ I + ++ G N TVFAYG TG+GK+YTM+
Sbjct: 40 VDSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMM 99
Query: 117 GTK-SDP---GLMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKSSAHLEL 172
GT DP G++ + IF I + E+ V SY+E+Y E I DLL + +L +
Sbjct: 100 GTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPV 159
Query: 173 REDPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRR 232
E+ G+ V GL I V S ++ E++ G + R T N SSRSH++ IT+
Sbjct: 160 HEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITIT-- 217
Query: 233 QKTEYCNQVMRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQK 292
QK G+L LVDLAGSE+ + + GQ L + IN+SL AL INAL +
Sbjct: 218 QKNVETGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKS 277
Query: 293 KGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKIKTHI 352
++VPYR+SKLTRIL++ L GNS+T ++ SP TL+TL++ RAK IK
Sbjct: 278 ---SHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKA 334
Query: 353 QKN 355
+ N
Sbjct: 335 KVN 337
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 195 bits (495), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 129/346 (37%), Positives = 176/346 (50%), Gaps = 25/346 (7%)
Query: 15 LTVAIKCRPLTEREQGR-DIVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFG 73
+ V + RPL E E R D K E V+ K Y FDR F
Sbjct: 9 IKVMCRFRPLNESEVNRGDKYVAKFQGEDTVM---------------IASKPYAFDRVFQ 53
Query: 74 PGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDP---GLMVLSLH 130
+ VY C ++ V++G N T+FAYG T SGK +TM G DP G++ +
Sbjct: 54 SSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIPRIVQ 113
Query: 131 TIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKSSAHLELREDPMHGIVVAGLRCIKV 190
IF+ I + EF + SY E+Y + I DLL+ S +L + ED V G V
Sbjct: 114 DIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFV 173
Query: 191 HSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYCNQVMRGKLSLVD 250
S D++++ ++ G S R T N SSRSH++ I VK Q+ Q + GKL LVD
Sbjct: 174 CSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVK--QENTQTEQKLSGKLYLVD 231
Query: 251 LAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTRILK 310
LAGSE+ S+ + G L + NIN+SL AL N I+AL +G YVPYR+SK+TRIL+
Sbjct: 232 LAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALA----EGSTYVPYRDSKMTRILQ 287
Query: 311 DGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKIKTHIQKNI 356
D L GN +T +V SP T +TL + RAK IK + N+
Sbjct: 288 DSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVNV 333
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 195 bits (495), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 117/348 (33%), Positives = 189/348 (54%), Gaps = 21/348 (6%)
Query: 15 LTVAIKCRPLTEREQGRDIVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGP 74
+ V + RPL E+E + K + +D +F+ ++H+ K K + +DR F
Sbjct: 7 IRVYCRLRPLCEKE-----IIAKERNAIRSVD-EFT---VEHLWKDDKAKQHMYDRVFDG 57
Query: 75 GCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTIFD 134
T DV+ ++ V G N +FAYG TGSGKT+T+ G S+PGL ++ +F
Sbjct: 58 NATQDDVFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFR 116
Query: 135 LIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKSSA---HLELREDPMHGIVVAGLRCIKVH 191
++KKD N F + +E+Y + + DLL A L++++D + V + + +
Sbjct: 117 IMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSIS 176
Query: 192 SADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYCNQ-VMRGKLSLVD 250
+ +++ ++ G+ +R T T N SSRSH ++ + + + T Q + RGKLS VD
Sbjct: 177 TYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVII---ESTNLQTQAIARGKLSFVD 233
Query: 251 LAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTRILK 310
LAGSER ++ S G +L++ +IN+SL AL + I+AL G ++PYRN KLT ++
Sbjct: 234 LAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALS----SGNQHIPYRNHKLTMLMS 289
Query: 311 DGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKIKTHIQKNIGS 358
D L GN++T+M ISP +S T N+L YA R + I KN+ S
Sbjct: 290 DSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSS 337
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 194 bits (493), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 127/340 (37%), Positives = 175/340 (51%), Gaps = 29/340 (8%)
Query: 15 LTVAIKCRPLTEREQGRD---IVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRA 71
+ V + RPL E E R I + + + VV+ K Y FDR
Sbjct: 9 IKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVI-----------------ASKPYAFDRV 51
Query: 72 FGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDP---GLMVLS 128
F + VY C ++ V++G N T+FAYG T SGKT+TM G DP G++
Sbjct: 52 FQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRI 111
Query: 129 LHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKSSAHLELREDPMHGIVVAGLRCI 188
+ IF+ I + EF + SY E+Y + I DLL+ S +L + ED V G
Sbjct: 112 VQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTER 171
Query: 189 KVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYCNQVMRGKLSL 248
V S D++++ ++ G S R T N SSRSH++ I VK Q+ Q + GKL L
Sbjct: 172 FVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVK--QENTQTEQKLSGKLYL 229
Query: 249 VDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTRI 308
VDLAGSE+ S+ + G L + NIN+SL AL N I+AL +G YVPYR+SK+TRI
Sbjct: 230 VDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALA----EGSTYVPYRDSKMTRI 285
Query: 309 LKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKI 348
L+D L GN +T +V SP T +TL + RAK I
Sbjct: 286 LQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 194 bits (492), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 115/348 (33%), Positives = 187/348 (53%), Gaps = 21/348 (6%)
Query: 15 LTVAIKCRPLTEREQGRDIVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGP 74
+ V + RPL E+E + +K+++ +F+ ++H K K + +DR F
Sbjct: 15 IRVYCRIRPLNEKESS------EREKQMLTTVDEFT---VEHPWKDDKRKQHIYDRVFDM 65
Query: 75 GCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTIFD 134
+ D++ ++ V G N +FAYG TGSGKT+T+ G +S+PGL + +F+
Sbjct: 66 RASQDDIFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTPRATKELFN 124
Query: 135 LIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKSSAH---LELREDPMHGIVVAGLRCIKVH 191
++K+D F + +E+Y + + DLL SA LE+++D + V + I +
Sbjct: 125 ILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGMVFVENVTTIPIS 184
Query: 192 SADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYCNQ-VMRGKLSLVD 250
+ +++ +L G+ RR T N SSRSH +L + + + + Q RGKLS VD
Sbjct: 185 TLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVI---ESIDLQTQSAARGKLSFVD 241
Query: 251 LAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTRILK 310
LAGSER ++ S G +L++ +IN+SL AL + I AL G ++PYRN KLT ++
Sbjct: 242 LAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALS----SGNQHIPYRNHKLTMLMS 297
Query: 311 DGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKIKTHIQKNIGS 358
D L GN++T+M +SP +S T N+L YA R + I K+I S
Sbjct: 298 DSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIVNDPSKHISS 345
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 186 bits (471), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 123/339 (36%), Positives = 179/339 (52%), Gaps = 19/339 (5%)
Query: 14 TLTVAIKCRPLTEREQGRDIVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFG 73
++ V + RPL + E+ K + VV P+ ++ I + Y FD+ F
Sbjct: 12 SIKVVCRFRPLNDSEE-------KAGSKFVVKFPNNVEENCISIAGKV----YLFDKVFK 60
Query: 74 PGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDP---GLMVLSLH 130
P + VY S+++ V+ G N T+FAYG T SGKT+TM G D G++ ++
Sbjct: 61 PNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVN 120
Query: 131 TIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKSSAHLELREDPMHGIVVAGLRCIKV 190
IF+ I + + EF + SY E+Y + I DLL+ S +L + ED V G V
Sbjct: 121 DIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFV 180
Query: 191 HSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYCNQVMRGKLSLVD 250
S + + E++ G S R T N SSRSH+V I VK Q+ + + GKL LVD
Sbjct: 181 SSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVK--QENLENQKKLSGKLYLVD 238
Query: 251 LAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTRILK 310
LAGSE+ S+ + G L + NIN+SL AL N I+AL K ++PYR+SKLTRIL+
Sbjct: 239 LAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNK---THIPYRDSKLTRILQ 295
Query: 311 DGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKIK 349
+ L GN++T +V SP T +TL + RAK +K
Sbjct: 296 ESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVK 334
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 183 bits (464), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 109/296 (36%), Positives = 169/296 (57%), Gaps = 12/296 (4%)
Query: 58 QNRTKEKNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVG 117
+N + Y FD +G T D+Y + ++ +++G NA+V AYG TG+GKT+TM+G
Sbjct: 59 RNHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLG 118
Query: 118 TKSDPGLMVLSLHTIFDLIKKDKNSDE---FEVSCSYLEVYNEVIYDLLEKSSAHLELRE 174
+ PG++ +L + L +++ V+ SYLE+Y E + DLL+ +S L +RE
Sbjct: 119 SPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIRE 178
Query: 175 DPMHGIVVAGLRCIKVHS-ADKILELLNLGNSRRKTEN-TEANGTSSRSHAVLEITVKRR 232
D I++ GL + S AD E L SR +T T N SSRSHAVL + V +R
Sbjct: 179 DCRGNILIPGLSQKPISSFAD--FERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQR 236
Query: 233 QKTEYCNQVMRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQK 292
++ Q GKL L+DLAGSE + G +L++ IN SL L ++AL
Sbjct: 237 ERLAPFRQ-REGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDAL----N 291
Query: 293 KGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKI 348
+GL VPYR+SKLTR+L+D L G++ ++++A I+P Y T++ L +A R+K++
Sbjct: 292 QGLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEV 347
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 117/342 (34%), Positives = 187/342 (54%), Gaps = 24/342 (7%)
Query: 15 LTVAIKCRPLTEREQGR---DIVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRA 71
+ V ++ RPL+E E+ + DI+ VK++ + + +P + D +I+ + D+
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERH----EFIVDKV 57
Query: 72 FGPGCTNLDVYTACISSVISGVVQ-GLNATVFAYGSTGSGKTYTMVGTK----SD-PGLM 125
F N VY I +I + + G + FAYG TGSGKTYTM+G++ SD PG+
Sbjct: 58 FDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIF 117
Query: 126 VLSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKSSAHLELREDPMHGIVVAGL 185
+ IF + + + S+ E+Y +YDLL+K L E+ +VV L
Sbjct: 118 QYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAAL-ENGKKEVVVKDL 176
Query: 186 RCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYCNQVMRGK 245
+ ++V + ++++ + G RK N SSRSHA+L I +K K GK
Sbjct: 177 KILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINK-----NTSLGK 231
Query: 246 LSLVDLAGSERASEANSGGQKLR-DGANINRSLLALANCINALGKPQKKGLAYVPYRNSK 304
++ +DLAGSER ++ S ++ + DGANINRSLLAL CI A+ + ++P+R+S+
Sbjct: 232 IAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKN----HIPFRDSE 287
Query: 305 LTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAK 346
LT++L+D G S+++M+A ISP S TLNTL+Y+ R K
Sbjct: 288 LTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK 329
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 172 bits (437), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 107/305 (35%), Positives = 163/305 (53%), Gaps = 19/305 (6%)
Query: 58 QNRTKEKNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVG 117
+ R N+ FD F P TN +++ I ++ + G N +FAYG TGSGKTYTM+
Sbjct: 47 EGRILSYNFQFDMIFEPSHTNKEIFEE-IRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLN 105
Query: 118 TKSDPGLMVLSLHTIFDLIKKDKNSD-EFEVSCSYLEVYNEVIYDLLEKSSAHLELRE-- 174
+ G++ ++L IF K +E+ C Y+E+YNE I DLL +H + E
Sbjct: 106 --AGDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEIL 163
Query: 175 -----DPMH-----GIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAV 224
D H G + + +K+ S ++ +L + R T T +N SSRSH+V
Sbjct: 164 DSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSV 223
Query: 225 LEITVKRRQKTEYCNQVMRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCI 284
+ + R + + +GKL+LVDLAGSER + + G++LR+ NIN+SL L + I
Sbjct: 224 FMVHINGRNL--HTGETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVI 281
Query: 285 NALGKPQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADR 344
AL P G Y+P+RNSKLT +L+ L G+S+T+M I P + TLN+L++A +
Sbjct: 282 YALNTPD-AGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASK 340
Query: 345 AKKIK 349
K
Sbjct: 341 VNSTK 345
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 112/335 (33%), Positives = 179/335 (53%), Gaps = 26/335 (7%)
Query: 15 LTVAIKCRPLTEREQGRDIVR-VKHDKEVVVLDPDFSKDYLD-HIQNRTKEKNYCFDRAF 72
+ V + RP E E+ R HD+ V L +D +++ ++ + FD+ F
Sbjct: 61 IRVFCRIRPPLESEENRMCCTWTYHDESTVELQS------IDAQAKSKMGQQIFSFDQVF 114
Query: 73 GPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTI 132
P + D++ +S +I + G N +FAYG TGSGKTYTM G G++ ++ +
Sbjct: 115 HPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLL 173
Query: 133 FDLIKKDKNSD-EFEVSCSYLEVYNEVIYDLLEKSSAHLELR--EDPMHGIVVAGLRCIK 189
FD I+ +N E+E+ ++LE+YNEV+YDLL +E+R ++ + I V+ +
Sbjct: 174 FDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEET 233
Query: 190 VHSADKILELLNLGNSRRKTENTEANGTSSRSHAV--LEITVKRRQKTEYCNQVMRGKLS 247
V + + L++ R T +T N SSRSHAV LE+ + +K E + G ++
Sbjct: 234 VLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE----ISVGSIN 289
Query: 248 LVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTR 307
LVDLAGSE + ++ + NINRSL L N I AL + Q ++PYRNSKLT
Sbjct: 290 LVDLAGSESPKTST----RMTETKNINRSLSELTNVILALLQKQD----HIPYRNSKLTH 341
Query: 308 ILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYA 342
+L L GNS+T+M +SP + ++ +L++A
Sbjct: 342 LLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 376
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 112/335 (33%), Positives = 179/335 (53%), Gaps = 26/335 (7%)
Query: 15 LTVAIKCRPLTEREQGRDIVR-VKHDKEVVVLDPDFSKDYLD-HIQNRTKEKNYCFDRAF 72
+ V + RP E E+ R HD+ V L +D +++ ++ + FD+ F
Sbjct: 55 IRVFCRIRPPLESEENRMCCTWTYHDESTVELQS------IDAQAKSKMGQQIFSFDQVF 108
Query: 73 GPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTI 132
P + D++ +S +I + G N +FAYG TGSGKTYTM G G++ ++ +
Sbjct: 109 HPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLL 167
Query: 133 FDLIKKDKNSD-EFEVSCSYLEVYNEVIYDLLEKSSAHLELR--EDPMHGIVVAGLRCIK 189
FD I+ +N E+E+ ++LE+YNEV+YDLL +E+R ++ + I V+ +
Sbjct: 168 FDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEET 227
Query: 190 VHSADKILELLNLGNSRRKTENTEANGTSSRSHAV--LEITVKRRQKTEYCNQVMRGKLS 247
V + + L++ R T +T N SSRSHAV LE+ + +K E + G ++
Sbjct: 228 VLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE----ISVGSIN 283
Query: 248 LVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTR 307
LVDLAGSE + ++ + NINRSL L N I AL + Q ++PYRNSKLT
Sbjct: 284 LVDLAGSESPKTST----RMTETKNINRSLSELTNVILALLQKQD----HIPYRNSKLTH 335
Query: 308 ILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYA 342
+L L GNS+T+M +SP + ++ +L++A
Sbjct: 336 LLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 370
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 166 bits (420), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 179/334 (53%), Gaps = 24/334 (7%)
Query: 15 LTVAIKCRPLTEREQGRDIVR-VKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFG 73
+ V + RP E E+ R HD+ V L ++ +++ ++ + FD+ F
Sbjct: 69 IRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQ-----AKSKMGQQIFSFDQVFH 123
Query: 74 PGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTIF 133
P + D++ +S +I + G N +FAYG TGSGKTYTM G G++ ++ +F
Sbjct: 124 PLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLF 182
Query: 134 DLIKKDKNSD-EFEVSCSYLEVYNEVIYDLLEKSSAHLELR--EDPMHGIVVAGLRCIKV 190
D I+ +N E+E+ ++LE+YNEV+YDLL +E+R ++ + I V+ + V
Sbjct: 183 DSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETV 242
Query: 191 HSADKILELLNLGNSRRKTENTEANGTSSRSHAV--LEITVKRRQKTEYCNQVMRGKLSL 248
+ + L++ R T +T N SSRSHAV LE+ + +K E + G ++L
Sbjct: 243 LDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE----ISVGSINL 298
Query: 249 VDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTRI 308
VDLAGSE + ++ + NINRSL L N I AL + Q ++PYRNSKLT +
Sbjct: 299 VDLAGSESPKTST----RMTETKNINRSLSELTNVILALLQKQD----HIPYRNSKLTHL 350
Query: 309 LKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYA 342
L L GNS+T+M +SP + ++ +L++A
Sbjct: 351 LMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 384
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 165 bits (418), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 171/302 (56%), Gaps = 21/302 (6%)
Query: 57 IQNRTKEKNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMV 116
IQN + + FD+ F TN+DV+ + ++ + G N +FAYG TGSGKT+TM+
Sbjct: 101 IQNTAQVHEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVAIFAYGQTGSGKTFTML 159
Query: 117 GTKSDPGLMVL--SLHTIFDLIKKDKNSD-EFEVSCSYLEVYNEVIYDLL-------EKS 166
+PG ++ ++ IF+ I K K +++V+ ++E+YNE I DLL E +
Sbjct: 160 ----NPGDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDT 215
Query: 167 SAHL--ELRED-PMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHA 223
S L E+R D + + +K+ S + + +L N R T +T +N SSRSH+
Sbjct: 216 SIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHS 275
Query: 224 VLEITVKRRQKTEYCNQVMRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANC 283
+ I + + G L+LVDLAGSER + + G +LR+ NIN+SL AL +
Sbjct: 276 IFIIHLSGSNAKTGAHSY--GTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDV 333
Query: 284 INALGKPQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYAD 343
I+ALG+P ++P+RNSKLT +L+ L+G+S+T+M ISP S + TLN+L++A
Sbjct: 334 IHALGQPDSTK-RHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFAS 392
Query: 344 RA 345
+
Sbjct: 393 KV 394
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 179/334 (53%), Gaps = 24/334 (7%)
Query: 15 LTVAIKCRPLTEREQGRDIVR-VKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFG 73
+ V + RP E E+ R HD+ V L S D +++ ++ + FD+ F
Sbjct: 58 IRVFCRIRPPLESEENRMCCTWTYHDESTVELQ---SID--AQAKSKMGQQIFSFDQVFH 112
Query: 74 PGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTIF 133
P + D++ +S +I + G N +FAYG +GSGKTYTM G G++ ++ +F
Sbjct: 113 PLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQSGSGKTYTMDGVPESVGVIPRTVDLLF 171
Query: 134 DLIKKDKNSD-EFEVSCSYLEVYNEVIYDLLEKSSAHLELR--EDPMHGIVVAGLRCIKV 190
D I+ +N E+E+ ++LE+YNEV+YDLL +E+R ++ + I V+ + V
Sbjct: 172 DSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETV 231
Query: 191 HSADKILELLNLGNSRRKTENTEANGTSSRSHAV--LEITVKRRQKTEYCNQVMRGKLSL 248
+ + L++ R T +T N SSRSHAV LE+ + +K E + G ++L
Sbjct: 232 LDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE----ISVGSINL 287
Query: 249 VDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTRI 308
VDLAGSE + ++ + NINRSL L N I AL + Q ++PYRNSKLT +
Sbjct: 288 VDLAGSESPKTST----RMTETKNINRSLSELTNVILALLQKQD----HIPYRNSKLTHL 339
Query: 309 LKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYA 342
L L GNS+T+M +SP + ++ +L++A
Sbjct: 340 LMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 373
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 111/335 (33%), Positives = 178/335 (53%), Gaps = 26/335 (7%)
Query: 15 LTVAIKCRPLTEREQGRDIVR-VKHDKEVVVLDPDFSKDYLD-HIQNRTKEKNYCFDRAF 72
+ V + RP E E+ R HD+ V L +D +++ ++ + FD+ F
Sbjct: 58 IRVFCRIRPPLESEENRMCCTWTYHDESTVELQS------IDAQAKSKMGQQIFSFDQVF 111
Query: 73 GPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTI 132
P + D++ +S +I + G N +FAYG TGSGKTYTM G G++ ++ +
Sbjct: 112 HPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLL 170
Query: 133 FDLIKKDKNSD-EFEVSCSYLEVYNEVIYDLLEKSSAHLELR--EDPMHGIVVAGLRCIK 189
FD I+ +N E+E+ ++LE+YNEV+YDLL +E+R ++ + I V+ +
Sbjct: 171 FDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEET 230
Query: 190 VHSADKILELLNLGNSRRKTENTEANGTSSRSHAV--LEITVKRRQKTEYCNQVMRGKLS 247
V + + L++ R T +T N SSRSHAV LE+ + +K E + G ++
Sbjct: 231 VLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE----ISVGSIN 286
Query: 248 LVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTR 307
LVDLAGSE + ++ + NI RSL L N I AL + Q ++PYRNSKLT
Sbjct: 287 LVDLAGSESPKTST----RMTETKNIKRSLSELTNVILALLQKQD----HIPYRNSKLTH 338
Query: 308 ILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYA 342
+L L GNS+T+M +SP + ++ +L++A
Sbjct: 339 LLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 373
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 163 bits (412), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 168/300 (56%), Gaps = 17/300 (5%)
Query: 57 IQNRTKEKNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMV 116
IQN + + FD+ F TN+DV+ + ++ + G N +FAYG TGSGKT+TM+
Sbjct: 56 IQNTAQVHEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTML 114
Query: 117 GTKSDPGLMVLSLHTIFDLIKKDKNSD-EFEVSCSYLEVYNEVIYDLL-------EKSSA 168
G++ ++ IF+ I K K +++V+C ++E+YNE I DLL E +S
Sbjct: 115 N--PGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSI 172
Query: 169 HL--ELRED-PMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVL 225
L E+R D + + K+ S + + +L N R T +T +N SSRSH++
Sbjct: 173 GLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIF 232
Query: 226 EITVKRRQKTEYCNQVMRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCIN 285
I + + G L+LVDLAGSER + + G +LR+ NIN+SL L + I+
Sbjct: 233 IIHLSGSNAKTGAHSY--GTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIH 290
Query: 286 ALGKPQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRA 345
ALG+P ++P+RNSKLT +L+ L+G+S+T+M ISP S + TLN+L++A +
Sbjct: 291 ALGQPDSTK-RHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 349
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 163 bits (412), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 168/300 (56%), Gaps = 17/300 (5%)
Query: 57 IQNRTKEKNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMV 116
IQN + + FD+ F TN+DV+ + ++ + G N +FAYG TGSGKT+TM+
Sbjct: 44 IQNTAQVHEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTML 102
Query: 117 GTKSDPGLMVLSLHTIFDLIKKDKNSD-EFEVSCSYLEVYNEVIYDLL-------EKSSA 168
G++ ++ IF+ I K K +++V+C ++E+YNE I DLL E +S
Sbjct: 103 --NPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSI 160
Query: 169 HL--ELRED-PMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVL 225
L E+R D + + K+ S + + +L N R T +T +N SSRSH++
Sbjct: 161 GLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIF 220
Query: 226 EITVKRRQKTEYCNQVMRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCIN 285
I + + G L+LVDLAGSER + + G +LR+ NIN+SL L + I+
Sbjct: 221 IIHLSGSNAKTGAHSY--GTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIH 278
Query: 286 ALGKPQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRA 345
ALG+P ++P+RNSKLT +L+ L+G+S+T+M ISP S + TLN+L++A +
Sbjct: 279 ALGQPDSTK-RHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 337
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 162 bits (409), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 166/297 (55%), Gaps = 17/297 (5%)
Query: 56 HIQNRTKEKNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTM 115
+I N + FD+ F +N D+ +S +I + G N VFAYG TGSGKT+TM
Sbjct: 422 NINNNFSNLRFLFDKIFEREQSN-DLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTM 480
Query: 116 VGTKSDP--GLMVLSLHTIFDLIKKDKNSD-EFEVSCSYLEVYNEVIYDLLEKS---SAH 169
S P G++ LSL IF+ I++ K + V ++E+YNE I DLL +
Sbjct: 481 ----SHPTNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTK 536
Query: 170 LELREDPMHG-IVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEIT 228
E++ D + G V + I + S ++ + +LN N +R T T++N SSRSH++ I
Sbjct: 537 YEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIID 596
Query: 229 VKRRQKTEYCNQVMRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALG 288
++ + G L+L+DLAGSER + + + G +L++ IN+SL L + I++L
Sbjct: 597 LQGYN--SLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSL- 653
Query: 289 KPQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRA 345
K ++VPYRNSKLT +LK L GNS+T+M ISP+ + T+N+L++A +
Sbjct: 654 --NLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKV 708
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 167/300 (55%), Gaps = 17/300 (5%)
Query: 57 IQNRTKEKNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMV 116
IQN + + FD+ F TN+DV+ + ++ + G N +FAYG TGSGKT+TM+
Sbjct: 45 IQNTAQVHEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTML 103
Query: 117 GTKSDPGLMVLSLHTIFDLIKKDKNSD-EFEVSCSYLEVYNEVIYDLL-------EKSSA 168
G++ ++ IF+ I K K +++V+C ++E+YNE I DLL E +S
Sbjct: 104 N--PGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSI 161
Query: 169 HL--ELRED-PMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVL 225
L E+R D + + K+ S + + +L N R T +T +N SSRSH++
Sbjct: 162 GLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIF 221
Query: 226 EITVKRRQKTEYCNQVMRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCIN 285
I + + G L+LVDLAGSER + + G +LR+ NI +SL L + I+
Sbjct: 222 IIHLSGSNAKTGAHSY--GTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIH 279
Query: 286 ALGKPQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRA 345
ALG+P ++P+RNSKLT +L+ L+G+S+T+M ISP S + TLN+L++A +
Sbjct: 280 ALGQPDSTK-RHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 167/300 (55%), Gaps = 17/300 (5%)
Query: 57 IQNRTKEKNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMV 116
IQN + + FD+ F TN+DV+ + ++ + G N +FAYG TGSGKT+TM+
Sbjct: 45 IQNTAQVHEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTML 103
Query: 117 GTKSDPGLMVLSLHTIFDLIKKDKNSD-EFEVSCSYLEVYNEVIYDLL-------EKSSA 168
G++ ++ IF+ I K K +++V+C ++E+YNE I DLL E +S
Sbjct: 104 --NPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSI 161
Query: 169 HL--ELRED-PMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVL 225
L E+R D + + K+ S + + +L N R T +T +N SSRSH++
Sbjct: 162 GLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIF 221
Query: 226 EITVKRRQKTEYCNQVMRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCIN 285
I + + G L+LVDLAGS R + + G +LR+ NIN+SL L + I+
Sbjct: 222 IIHLSGSNAKTGAHSY--GTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIH 279
Query: 286 ALGKPQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRA 345
ALG+P ++P+RNSKLT +L+ L+G+S+T+M ISP S + TLN+L++A +
Sbjct: 280 ALGQPDSTK-RHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 160 bits (405), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 167/300 (55%), Gaps = 17/300 (5%)
Query: 57 IQNRTKEKNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMV 116
IQN + + FD+ F TN+DV+ + ++ + G N +FAYG TGSGKT+TM+
Sbjct: 45 IQNTAQVHEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTML 103
Query: 117 GTKSDPGLMVLSLHTIFDLIKKDKNSD-EFEVSCSYLEVYNEVIYDLL-------EKSSA 168
G++ ++ IF+ I K K +++V+C ++E+YNE I DLL E +S
Sbjct: 104 --NPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSI 161
Query: 169 HL--ELRED-PMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVL 225
L E+R D + + K+ S + + +L N R T +T +N SS SH++
Sbjct: 162 GLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIF 221
Query: 226 EITVKRRQKTEYCNQVMRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCIN 285
I + + G L+LVDLAGSER + + G +LR+ NIN+SL L + I+
Sbjct: 222 IIHLSGSNAKTGAHSY--GTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIH 279
Query: 286 ALGKPQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRA 345
ALG+P ++P+RNSKLT +L+ L+G+S+T+M ISP S + TLN+L++A +
Sbjct: 280 ALGQPDSTK-RHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 157 bits (396), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 165/299 (55%), Gaps = 23/299 (7%)
Query: 66 YCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDPGLM 125
+ FD+ F TN +++ + +I + G N +FAYG TGSGKTYTM+ G++
Sbjct: 76 FKFDKIFDQQETNDEIFKE-VGQLIQSSLDGYNVCIFAYGQTGSGKTYTMLNPGD--GIV 132
Query: 126 VLSLHTIFDLIKK-DKNSDEFEVSCSYLEVYNEVIYDLLEKSS-----------AHLELR 173
+++ IF I K ++VSC ++E+YNE I DLL + + E+R
Sbjct: 133 PATINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHEIR 192
Query: 174 ED-PMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRR 232
D + + + + S D + ++L N R T +T AN SSRSH++ I ++
Sbjct: 193 HDQELKTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLE-- 250
Query: 233 QKTEYCNQVMRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKP-- 290
K E + +G L+LVDLAGSER + + G++LR+ +IN+SL L + I+AL P
Sbjct: 251 GKNEGTGEKSQGILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPDG 310
Query: 291 QKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKIK 349
QK+ ++P+RNSKLT +L+ L G+S+T+M ISP + T+N+L++A + K
Sbjct: 311 QKR---HIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKVNNTK 366
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 152 bits (384), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 98/301 (32%), Positives = 155/301 (51%), Gaps = 15/301 (4%)
Query: 57 IQNRTKEKNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMV 116
+ N+ + ++ D +L VY V+S + G N T+ YG TG+GKTYTM+
Sbjct: 65 VNNQQTDWSFKLDGVLHDASQDL-VYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMM 123
Query: 117 GTKSD---PGLMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEK------SS 167
G + G++ +L +F +I+ ++ + V SYLE+YNE ++DLL S
Sbjct: 124 GATENYKHRGILPRALQQVFRMIE-ERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSV 182
Query: 168 AHLELREDPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEI 227
+ + E+P G+ + GL + LL G + R + N SSRSH + I
Sbjct: 183 TPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTI 241
Query: 228 TVKRRQKTEYCNQVMRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINAL 287
++ +T + + K++LVDLAGSER ++ S GQ L++ IN+SL L I AL
Sbjct: 242 YLEAHSRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIAL 301
Query: 288 GKPQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKK 347
G ++ ++P+R KLT LKD L GN V+V I +Q TL++L++A R K
Sbjct: 302 GDQKRD---HIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKL 358
Query: 348 I 348
+
Sbjct: 359 V 359
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 145 bits (367), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 150/295 (50%), Gaps = 26/295 (8%)
Query: 63 EKNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDP 122
+ + FD AF + ++Y A I ++ +++G T AYG TG+GK+Y+M T
Sbjct: 60 QNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGE 119
Query: 123 ------GLMVLSLHTIFDLI--KKDKNSDEFEVSCSYLEVYNEVIYDLLEKSSAHLELRE 174
G++ +L IF+ + +++ N D +V S++E+YNE +DLL S+ H+
Sbjct: 120 ILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLL-GSTPHM---- 174
Query: 175 DPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQK 234
PM C+ +HS + +L LG R+ T N SSRSHA++ I VK K
Sbjct: 175 -PMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVK--SK 231
Query: 235 TEYCNQVMRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKG 294
T + ++++VDLAGSE G ++G NIN LL+ IN + G
Sbjct: 232 THH------SRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLS----INKVVMSMAAG 281
Query: 295 LAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKIK 349
+PYR+S LT +L+ L+ S +A ISP TL+TL++ AKK++
Sbjct: 282 HTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKKLR 336
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 142 bits (357), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 147/292 (50%), Gaps = 26/292 (8%)
Query: 63 EKNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDP 122
+ + FD AF + ++Y A I ++ +++G T AYG TG+GK+Y+M T
Sbjct: 60 QNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGE 119
Query: 123 ------GLMVLSLHTIFDLI--KKDKNSDEFEVSCSYLEVYNEVIYDLLEKSSAHLELRE 174
G++ +L IF+ + +++ N D +V S++E+YNE +DLL S+ H+
Sbjct: 120 ILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLL-GSTPHM---- 174
Query: 175 DPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQK 234
PM C+ +HS + +L LG R+ T N SSRSHA++ I VK K
Sbjct: 175 -PMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVK--SK 231
Query: 235 TEYCNQVMRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKG 294
T + ++++VDLAGSE G ++G NIN LL+ IN + G
Sbjct: 232 THH------SRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLS----INKVVMSMAAG 281
Query: 295 LAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAK 346
+PYR+S LT +L+ L+ S +A ISP TL+TL++ AK
Sbjct: 282 HTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAK 333
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 138 bits (348), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 153/301 (50%), Gaps = 27/301 (8%)
Query: 65 NYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTM-VGTKSDP- 122
++ FDR F PG +V+ I+ ++ + G +FAYG TGSGKT+TM G DP
Sbjct: 84 DFSFDRVFPPGSGQDEVFEE-IAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQ 142
Query: 123 --GLMVLSLHTIFDLIKKDKNSD-EFEVSCSYLEVYNEVIYDLLEKSS-----AHLELRE 174
GL+ +L +F + ++ + SY+E+YNE + DLL + E+R
Sbjct: 143 LEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGECEIRR 202
Query: 175 DPMHG--IVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAV--LEITVK 230
+ V R + V ++ LL+L R T N SSRSH+V L+I+ +
Sbjct: 203 AGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQISGE 262
Query: 231 RRQKTEYCNQVMRGKLSLVDLAGSERASEANSGG----QKLRDGANINRSLLALANCINA 286
+ C LSLVDLAGSER + G ++LR+ IN SL L I A
Sbjct: 263 HSSRGLQCGA----PLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMA 318
Query: 287 LGKPQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAK 346
L + ++VPYRNSKLT +L++ L G+++ +M ISP++ +LN+L++A +
Sbjct: 319 LSNKE----SHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVN 374
Query: 347 K 347
+
Sbjct: 375 Q 375
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 132 bits (332), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 126/250 (50%), Gaps = 24/250 (9%)
Query: 14 TLTVAIKCRPLTEREQGRD---IVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDR 70
++ V + RPL E E R I + K ++ VV+ + K Y FDR
Sbjct: 7 SIKVMCRFRPLNEAEILRGDKFIPKFKGEETVVI----------------GQGKPYVFDR 50
Query: 71 AFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDPGLMVL--- 127
P T VY AC ++ V++G N T+FAYG T SGKT+TM G DP LM +
Sbjct: 51 VLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPR 110
Query: 128 SLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKSSAHLELREDPMHGIVVAGLRC 187
H IFD I + EF + SY E+Y + I DLL+ S +L + ED V G
Sbjct: 111 IAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTE 170
Query: 188 IKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYCNQVMRGKLS 247
V S ++++++++ G + R T N SSRSH++ I +K Q+ + + GKL
Sbjct: 171 RFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIK--QENVETEKKLSGKLY 228
Query: 248 LVDLAGSERA 257
LVDLAGSE+
Sbjct: 229 LVDLAGSEKV 238
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 272 NINRSLLALANCINALGKPQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQ 331
NIN+SL AL N I+AL + K +VPYR+SK+TRIL+D L GN +T +V SP
Sbjct: 3 NINKSLSALGNVISALAEGTK---THVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFN 59
Query: 332 YHHTLNTLKYADRAKKIKTHIQKNI 356
T +TL + RAK IK + N+
Sbjct: 60 EAETKSTLMFGQRAKTIKNTVSVNL 84
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 274 NRSLLALANCINALGKPQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYH 333
N+SL AL N I+AL + K +VPYR+SK+TRIL+D L GN +T +V SP
Sbjct: 1 NKSLSALGNVISALAEGTK---THVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEA 57
Query: 334 HTLNTLKYADRAKKIKTHIQKNI 356
T +TL + RAK IK + N+
Sbjct: 58 ETKSTLMFGQRAKTIKNTVSVNL 80
>pdb|2IJD|1 Chain 1, Crystal Structure Of The Poliovirus Precursor Protein 3cd
pdb|2IJD|2 Chain 2, Crystal Structure Of The Poliovirus Precursor Protein 3cd
Length = 644
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 52 DYLDHIQNRTKEKNYCFDRAFGPGCTNLDVYTACISSVI 90
DYL+H + K K YC GC+ ++ + I+++I
Sbjct: 449 DYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLI 487
>pdb|1WCS|A Chain A, A Mutant Of Trypanosoma Rangeli Sialidase Displaying
Trans- Sialidase Activity
Length = 641
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 9/117 (7%)
Query: 411 SLEISENAQERINLQNALFELEETNLRIRAELQYLDDAIAKKQAIGKDDAVVEALKSRRQ 470
SL + E +N+ EE+N IR + + + + D +V +R +
Sbjct: 3 SLAPGSSRVELFKRKNSTVPFEESNGTIRERVVH---SFRIPTIVNVDGVMVAIADARYE 59
Query: 471 IILDN------IRENDEAGINYQKEIEENESRRCELQKMIDEAVSSNGNKTYLRILS 521
DN ++ + + G + +I SR + +++D V GNK Y+ + S
Sbjct: 60 TSFDNSFIETAVKYSVDDGATWNTQIAIKNSRASSVSRVVDPTVIVKGNKLYILVGS 116
>pdb|3OL6|A Chain A, Poliovirus Polymerase Elongation Complex
pdb|3OL6|E Chain E, Poliovirus Polymerase Elongation Complex
pdb|3OL6|I Chain I, Poliovirus Polymerase Elongation Complex
pdb|3OL6|M Chain M, Poliovirus Polymerase Elongation Complex
pdb|3OL7|A Chain A, Poliovirus Polymerase Elongation Complex With Ctp
pdb|3OL7|E Chain E, Poliovirus Polymerase Elongation Complex With Ctp
pdb|3OL7|I Chain I, Poliovirus Polymerase Elongation Complex With Ctp
pdb|3OL7|M Chain M, Poliovirus Polymerase Elongation Complex With Ctp
pdb|3OL8|A Chain A, Poliovirus Polymerase Elongation Complex With Ctp-Mn
pdb|3OL8|E Chain E, Poliovirus Polymerase Elongation Complex With Ctp-Mn
pdb|3OL8|I Chain I, Poliovirus Polymerase Elongation Complex With Ctp-Mn
pdb|3OL8|M Chain M, Poliovirus Polymerase Elongation Complex With Ctp-Mn
pdb|3OL9|A Chain A, Poliovirus Polymerase Elongation Complex With 3'-Deoxy-Ctp
pdb|3OL9|E Chain E, Poliovirus Polymerase Elongation Complex With 3'-Deoxy-Ctp
pdb|3OL9|I Chain I, Poliovirus Polymerase Elongation Complex With 3'-Deoxy-Ctp
pdb|3OL9|M Chain M, Poliovirus Polymerase Elongation Complex With 3'-Deoxy-Ctp
pdb|3OLA|A Chain A, Poliovirus Polymerase Elongation Complex With 2'-Deoxy-Ctp
pdb|3OLA|E Chain E, Poliovirus Polymerase Elongation Complex With 2'-Deoxy-Ctp
pdb|3OLA|I Chain I, Poliovirus Polymerase Elongation Complex With 2'-Deoxy-Ctp
pdb|3OLA|M Chain M, Poliovirus Polymerase Elongation Complex With 2'-Deoxy-Ctp
pdb|3OLB|A Chain A, Poliovirus Polymerase Elongation Complex With
2',3'-Dideoxy-Ctp
pdb|3OLB|E Chain E, Poliovirus Polymerase Elongation Complex With
2',3'-Dideoxy-Ctp
pdb|3OLB|I Chain I, Poliovirus Polymerase Elongation Complex With
2',3'-Dideoxy-Ctp
pdb|3OLB|M Chain M, Poliovirus Polymerase Elongation Complex With
2',3'-Dideoxy-Ctp
Length = 471
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 52 DYLDHIQNRTKEKNYCFDRAFGPGCTNLDVYTACISSVI 90
DYL+H + K K YC GC+ ++ + I+++I
Sbjct: 266 DYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLI 304
>pdb|1RDR|A Chain A, Poliovirus 3d Polymerase
Length = 461
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 52 DYLDHIQNRTKEKNYCFDRAFGPGCTNLDVYTACISSVI 90
DYL+H + K K YC GC+ ++ + I+++I
Sbjct: 266 DYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLI 304
>pdb|2IJF|A Chain A, Crystal Structure Of The Poliovirus Rna-Dependent Rna
Polymerase Fidelity Mutant 3dpol G64s
Length = 461
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 52 DYLDHIQNRTKEKNYCFDRAFGPGCTNLDVYTACISSVI 90
DYL+H + K K YC GC+ ++ + I+++I
Sbjct: 266 DYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLI 304
>pdb|1RAJ|A Chain A, Poliovirus Polymerase With A 68 Residue N-terminal
Truncation
Length = 393
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 52 DYLDHIQNRTKEKNYCFDRAFGPGCTNLDVYTACISSVI 90
DYL+H + K K YC GC+ ++ + I+++I
Sbjct: 198 DYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLI 236
>pdb|1MZ5|A Chain A, Trypanosoma Rangeli Sialidase
pdb|1MZ6|A Chain A, Trypanosoma Rangeli Sialidase In Complex With The
Inhibitor Dana
Length = 638
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 9/108 (8%)
Query: 420 ERINLQNALFELEETNLRIRAELQYLDDAIAKKQAIGKDDAVVEALKSRRQIILDN---- 475
E +N+ EE+N IR + + + + D +V +R + DN
Sbjct: 9 ELFKRKNSTVPFEESNGTIRERVVH---SFRIPTIVNVDGVMVATADARYETSFDNSFIE 65
Query: 476 --IRENDEAGINYQKEIEENESRRCELQKMIDEAVSSNGNKTYLRILS 521
++ + + G + +I SR + +++D V GNK Y+ + S
Sbjct: 66 TAVKYSVDDGATWNTQIAIKNSRASSVSRVMDATVIVKGNKLYILVGS 113
>pdb|3IPK|A Chain A, Crystal Structure Of A3vp1 Of AgiII OF STREPTOCOCCUS
MUTANS
pdb|3IPK|B Chain B, Crystal Structure Of A3vp1 Of AgiII OF STREPTOCOCCUS
MUTANS
pdb|3IOX|A Chain A, Crystal Structure Of A3vp1 Of AgiII OF STREPTOCOCCUS
MUTANS
Length = 497
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 19/108 (17%)
Query: 364 SDYQRMIDNLQIEVCRLKKELADKDSQPSVKPAE-KAADDELSWLNVLSLEISENAQERI 422
+DY+ + Q ++ + +K+LAD P + KA +DE + + E+ ++ E
Sbjct: 62 ADYEAKLAKYQADLAKYQKDLAD-------YPVKLKAYEDEQTSIKAALAELEKHKNEDG 114
Query: 423 NL-----QNALFELE-ETNLRIRAELQYL-----DDAIAKKQAIGKDD 459
NL QN +++LE NL + + ++L DDA +K + K D
Sbjct: 115 NLTEPSAQNLVYDLEPNANLSLTTDGKFLKASAVDDAFSKSTSKAKYD 162
>pdb|2A75|A Chain A, Trypanosoma Rangeli Sialidase In Complex With 2,3-
Difluorosialic Acid (Covalent Intermediate)
pdb|2AGS|A Chain A, Trypanosoma Rangeli Sialidase In Complex With 2-Keto-3-
Deoxy-D-Glycero-D-Galacto-2,3-Difluoro-Nononic Acid
(2,3- Difluoro-Kdn)
pdb|2FHR|A Chain A, Trypanosoma Rangeli Sialidase In Complex With 2,3-
Difluorosialic Acid (Covalent Intermediate)
Length = 652
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 9/117 (7%)
Query: 411 SLEISENAQERINLQNALFELEETNLRIRAELQYLDDAIAKKQAIGKDDAVVEALKSRRQ 470
SL + E +N+ EE+N IR + + + + D +V +R +
Sbjct: 14 SLAPGSSRVELFKRKNSTVPFEESNGTIRERVVH---SFRIPTIVNVDGVMVAIADARYE 70
Query: 471 IILDN------IRENDEAGINYQKEIEENESRRCELQKMIDEAVSSNGNKTYLRILS 521
DN ++ + + G + +I SR + +++D V GNK Y+ + S
Sbjct: 71 TSFDNSFIETAVKYSVDDGATWNTQIAIKNSRASSVSRVMDATVIVKGNKLYILVGS 127
>pdb|1N1S|A Chain A, Trypanosoma Rangeli Sialidase
pdb|1N1T|A Chain A, Trypanosoma Rangeli Sialidase In Complex With Dana At 1.6
A
pdb|1N1V|A Chain A, Trypanosoma Rangeli Sialidase In Complex With Dana
pdb|1N1Y|A Chain A, Trypanosoma Rangeli Sialidase In Complex With Sialic Acid
Length = 641
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 9/117 (7%)
Query: 411 SLEISENAQERINLQNALFELEETNLRIRAELQYLDDAIAKKQAIGKDDAVVEALKSRRQ 470
SL + E +N+ EE+N IR + + + + D +V +R +
Sbjct: 3 SLAPGSSRVELFKRKNSTVPFEESNGTIRERVVH---SFRIPTIVNVDGVMVAIADARYE 59
Query: 471 IILDN------IRENDEAGINYQKEIEENESRRCELQKMIDEAVSSNGNKTYLRILS 521
DN ++ + + G + +I SR + +++D V GNK Y+ + S
Sbjct: 60 TSFDNSFIETAVKYSVDDGATWNTQIAIKNSRASSVSRVMDATVIVKGNKLYILVGS 116
>pdb|2D2S|A Chain A, Crystal Structure Of The Exo84p C-Terminal Domains
Length = 235
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 350 THIQKNIGSIDTHVSDYQRMIDNLQIEVCRLKKE-----LADKDSQPSVKPAEKAADDEL 404
+H+ +++ S + ++ + IE+ RL+ E L D +SQ +E+ +D+EL
Sbjct: 2 SHMSRDMSSTAQRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLE-DLSERISDEEL 60
Query: 405 SWLNVLSLEISE 416
LN++SL+I +
Sbjct: 61 MLLNLISLKIEQ 72
>pdb|3IAL|A Chain A, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
Prolyl- Adenylate
pdb|3IAL|B Chain B, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
Prolyl- Adenylate
Length = 518
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 51 KDYLDHIQNRTKEKNYCFDRAFGPGCTNLDVYTACI 86
KD LD + R KEK + F + C + D ACI
Sbjct: 418 KDELDAYKARLKEKAFAFHNSMVTNCKSFDEIVACI 453
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,385,791
Number of Sequences: 62578
Number of extensions: 1012082
Number of successful extensions: 2746
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2435
Number of HSP's gapped (non-prelim): 83
length of query: 814
length of database: 14,973,337
effective HSP length: 107
effective length of query: 707
effective length of database: 8,277,491
effective search space: 5852186137
effective search space used: 5852186137
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)