Query 003511
Match_columns 814
No_of_seqs 401 out of 2121
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 00:49:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003511.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003511hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0243 Kinesin-like protein [ 100.0 2.6E-91 5.6E-96 820.4 50.3 369 5-394 41-430 (1041)
2 KOG0245 Kinesin-like protein [ 100.0 5E-91 1.1E-95 803.7 30.6 399 12-430 3-423 (1221)
3 KOG4280 Kinesin-like protein [ 100.0 8.7E-90 1.9E-94 779.5 26.4 362 11-390 3-371 (574)
4 KOG0240 Kinesin (SMY1 subfamil 100.0 4.5E-84 9.7E-89 716.6 43.3 356 11-384 5-368 (607)
5 KOG0242 Kinesin-like protein [ 100.0 3.8E-84 8.2E-89 756.7 37.1 361 11-384 4-368 (675)
6 PLN03188 kinesin-12 family pro 100.0 1.3E-82 2.8E-87 752.7 38.7 355 12-384 97-469 (1320)
7 cd01370 KISc_KIP3_like Kinesin 100.0 3.5E-81 7.6E-86 685.4 36.1 333 14-348 1-338 (338)
8 cd01373 KISc_KLP2_like Kinesin 100.0 1.5E-80 3.2E-85 680.3 36.1 321 14-348 2-337 (337)
9 KOG0241 Kinesin-like protein [ 100.0 2.1E-80 4.6E-85 702.7 32.8 365 12-388 3-384 (1714)
10 cd01368 KISc_KIF23_like Kinesi 100.0 4.4E-79 9.5E-84 670.6 36.1 327 14-346 2-345 (345)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 2.9E-77 6.3E-82 658.6 38.3 336 13-355 1-356 (356)
12 cd01367 KISc_KIF2_like Kinesin 100.0 4.7E-76 1E-80 641.0 34.0 317 14-346 2-322 (322)
13 cd01364 KISc_BimC_Eg5 Kinesin 100.0 2E-75 4.3E-80 642.9 37.6 329 13-356 2-351 (352)
14 cd01369 KISc_KHC_KIF5 Kinesin 100.0 1.9E-75 4.2E-80 636.3 36.2 318 13-348 2-325 (325)
15 cd01371 KISc_KIF3 Kinesin moto 100.0 3.3E-75 7.1E-80 637.0 37.1 324 13-348 1-333 (333)
16 cd01376 KISc_KID_like Kinesin 100.0 3.5E-75 7.5E-80 633.3 36.2 313 14-346 1-319 (319)
17 cd01374 KISc_CENP_E Kinesin mo 100.0 3.7E-75 8E-80 633.3 35.9 318 14-348 1-321 (321)
18 cd01372 KISc_KIF4 Kinesin moto 100.0 1.8E-74 3.9E-79 632.4 36.0 321 13-349 1-341 (341)
19 cd01375 KISc_KIF9_like Kinesin 100.0 3.7E-74 8E-79 629.0 35.8 325 14-346 1-334 (334)
20 cd01366 KISc_C_terminal Kinesi 100.0 2.8E-72 6E-77 612.3 37.3 319 13-350 2-328 (329)
21 smart00129 KISc Kinesin motor, 100.0 1.7E-71 3.8E-76 606.9 37.3 330 14-355 1-335 (335)
22 cd00106 KISc Kinesin motor dom 100.0 1.5E-70 3.3E-75 597.3 37.8 323 14-346 1-328 (328)
23 KOG0247 Kinesin-like protein [ 100.0 1.1E-69 2.4E-74 614.0 38.0 345 10-355 28-443 (809)
24 KOG0239 Kinesin (KAR3 subfamil 100.0 7.4E-71 1.6E-75 643.0 23.9 327 12-353 313-645 (670)
25 PF00225 Kinesin: Kinesin moto 100.0 7.8E-70 1.7E-74 593.2 26.5 318 20-348 1-335 (335)
26 KOG0246 Kinesin-like protein [ 100.0 6.3E-69 1.4E-73 593.9 29.8 328 11-352 206-545 (676)
27 KOG0244 Kinesin-like protein [ 100.0 1.6E-66 3.5E-71 603.2 21.6 337 21-378 1-347 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 1.4E-62 3.1E-67 569.2 36.5 317 63-383 55-372 (568)
29 cd01363 Motor_domain Myosin an 100.0 8.4E-49 1.8E-53 395.7 19.2 178 81-327 8-186 (186)
30 COG5059 KIP1 Kinesin-like prot 97.2 1.3E-06 2.8E-11 103.2 -15.5 206 63-288 352-566 (568)
31 PF09726 Macoilin: Transmembra 97.0 0.3 6.5E-06 59.6 28.0 21 369-389 419-439 (697)
32 KOG0971 Microtubule-associated 96.5 0.31 6.7E-06 59.5 21.8 42 529-573 505-546 (1243)
33 KOG0971 Microtubule-associated 96.4 0.86 1.9E-05 55.8 24.9 38 524-561 507-544 (1243)
34 PF09726 Macoilin: Transmembra 96.3 1 2.2E-05 55.2 25.4 26 480-505 551-576 (697)
35 PF09789 DUF2353: Uncharacteri 96.1 1.7 3.7E-05 48.4 23.8 213 363-577 25-263 (319)
36 PRK11637 AmiB activator; Provi 96.1 3.8 8.3E-05 47.3 31.4 28 532-559 223-250 (428)
37 PRK09039 hypothetical protein; 96.0 1.8 3.9E-05 48.8 23.5 37 474-510 130-166 (343)
38 TIGR02169 SMC_prok_A chromosom 95.7 3.7 8.1E-05 52.4 28.1 13 103-115 28-40 (1164)
39 COG4372 Uncharacterized protei 95.6 5.3 0.00011 45.3 28.0 57 276-343 8-66 (499)
40 TIGR02169 SMC_prok_A chromosom 95.5 4.6 0.0001 51.6 27.7 11 192-202 118-128 (1164)
41 PRK11637 AmiB activator; Provi 95.5 6.4 0.00014 45.4 27.9 22 525-546 230-251 (428)
42 KOG1029 Endocytic adaptor prot 95.3 2.3 5E-05 51.6 21.8 94 461-554 473-582 (1118)
43 KOG0976 Rho/Rac1-interacting s 95.3 4.3 9.3E-05 49.5 23.8 87 365-453 45-133 (1265)
44 COG1196 Smc Chromosome segrega 95.2 6.2 0.00013 51.3 27.5 75 482-561 398-472 (1163)
45 COG0556 UvrB Helicase subunit 95.1 0.036 7.7E-07 64.5 6.3 92 64-160 3-101 (663)
46 KOG0994 Extracellular matrix g 95.1 3 6.4E-05 52.6 22.2 22 367-388 1467-1488(1758)
47 PF07888 CALCOCO1: Calcium bin 95.0 8 0.00017 46.0 24.8 20 530-549 310-329 (546)
48 PF04849 HAP1_N: HAP1 N-termin 94.8 2.1 4.5E-05 47.4 18.4 26 422-447 163-188 (306)
49 TIGR02168 SMC_prok_B chromosom 94.3 15 0.00032 47.0 27.5 18 664-681 1056-1073(1179)
50 TIGR00606 rad50 rad50. This fa 94.3 9.9 0.00021 50.1 26.3 19 555-576 1027-1045(1311)
51 KOG0980 Actin-binding protein 94.3 18 0.0004 44.9 26.0 9 96-104 101-109 (980)
52 PF15619 Lebercilin: Ciliary p 94.1 4.1 9E-05 42.4 18.1 68 481-549 125-192 (194)
53 COG1196 Smc Chromosome segrega 94.1 14 0.0003 48.3 26.6 40 664-704 1033-1072(1163)
54 KOG0977 Nuclear envelope prote 94.1 3.8 8.2E-05 48.7 19.5 24 364-387 109-132 (546)
55 KOG0250 DNA repair protein RAD 94.0 11 0.00025 47.7 24.2 15 102-116 66-80 (1074)
56 COG1579 Zn-ribbon protein, pos 94.0 11 0.00023 40.7 24.3 39 411-449 37-75 (239)
57 KOG0250 DNA repair protein RAD 93.9 11 0.00025 47.7 23.9 24 638-661 508-531 (1074)
58 PRK04863 mukB cell division pr 93.9 5.7 0.00012 52.7 22.7 51 533-583 518-571 (1486)
59 PF15254 CCDC14: Coiled-coil d 93.9 5.4 0.00012 48.7 20.5 32 528-559 522-553 (861)
60 PRK03918 chromosome segregatio 93.8 20 0.00044 44.9 26.8 13 103-115 28-40 (880)
61 KOG0999 Microtubule-associated 93.8 16 0.00036 43.2 23.2 68 367-450 7-74 (772)
62 PF12128 DUF3584: Protein of u 93.7 15 0.00032 48.2 25.9 46 527-572 731-777 (1201)
63 PRK03918 chromosome segregatio 93.7 16 0.00034 45.8 25.6 12 191-202 108-119 (880)
64 PF07888 CALCOCO1: Calcium bin 93.6 14 0.00031 44.0 23.0 20 366-385 141-160 (546)
65 PF04849 HAP1_N: HAP1 N-termin 93.5 4.6 0.0001 44.8 17.8 84 362-450 161-244 (306)
66 PF00308 Bac_DnaA: Bacterial d 93.5 0.044 9.5E-07 57.5 2.3 49 64-115 3-51 (219)
67 PHA02562 46 endonuclease subun 93.4 10 0.00022 44.8 22.3 16 100-115 29-44 (562)
68 PRK04778 septation ring format 93.2 4.2 9.2E-05 48.8 18.7 44 407-452 258-301 (569)
69 PRK04863 mukB cell division pr 93.1 7 0.00015 51.9 21.6 33 529-561 436-468 (1486)
70 PF12128 DUF3584: Protein of u 93.0 23 0.0005 46.4 26.1 22 112-133 170-191 (1201)
71 KOG4673 Transcription factor T 92.9 23 0.0005 43.0 23.2 16 324-339 399-414 (961)
72 KOG0999 Microtubule-associated 92.8 11 0.00025 44.4 20.2 24 365-388 54-77 (772)
73 TIGR03017 EpsF chain length de 92.8 16 0.00035 41.9 22.1 67 314-386 128-196 (444)
74 KOG0161 Myosin class II heavy 92.7 34 0.00074 46.6 27.0 49 513-561 1089-1137(1930)
75 KOG0964 Structural maintenance 92.7 24 0.00052 44.5 23.5 35 93-137 23-57 (1200)
76 KOG0161 Myosin class II heavy 92.6 17 0.00037 49.2 24.0 27 88-114 157-184 (1930)
77 KOG0980 Actin-binding protein 92.4 37 0.0008 42.4 26.0 46 524-569 497-542 (980)
78 PF15254 CCDC14: Coiled-coil d 91.9 16 0.00035 44.8 20.7 20 542-561 529-548 (861)
79 KOG0964 Structural maintenance 91.8 20 0.00044 45.1 21.6 14 368-381 198-211 (1200)
80 KOG0977 Nuclear envelope prote 91.8 27 0.00058 41.8 22.1 31 360-390 48-78 (546)
81 TIGR01005 eps_transp_fam exopo 91.7 37 0.00081 42.0 24.7 26 315-340 152-177 (754)
82 PRK02224 chromosome segregatio 91.4 40 0.00088 42.4 24.9 13 103-115 28-40 (880)
83 TIGR00606 rad50 rad50. This fa 91.2 35 0.00075 45.2 24.8 38 524-561 1008-1047(1311)
84 COG2805 PilT Tfp pilus assembl 91.2 0.18 3.8E-06 55.6 3.4 30 86-115 113-142 (353)
85 KOG0946 ER-Golgi vesicle-tethe 91.1 34 0.00073 42.4 22.2 50 513-562 791-840 (970)
86 KOG0996 Structural maintenance 91.1 30 0.00065 44.5 22.3 29 664-695 668-696 (1293)
87 PF13851 GAS: Growth-arrest sp 91.1 22 0.00048 37.2 19.4 19 367-385 26-44 (201)
88 PRK06893 DNA replication initi 90.8 0.22 4.7E-06 52.5 3.6 48 63-116 10-57 (229)
89 COG4942 Membrane-bound metallo 90.7 38 0.00082 39.3 26.8 33 529-561 211-243 (420)
90 KOG1899 LAR transmembrane tyro 90.6 37 0.0008 40.9 21.4 47 540-593 293-339 (861)
91 KOG0982 Centrosomal protein Nu 90.6 38 0.00083 39.1 22.6 32 421-452 299-330 (502)
92 KOG0996 Structural maintenance 90.5 65 0.0014 41.7 24.9 12 104-115 114-125 (1293)
93 PHA02562 46 endonuclease subun 90.5 43 0.00094 39.6 24.5 13 302-314 149-161 (562)
94 PF05667 DUF812: Protein of un 90.4 30 0.00065 42.0 21.3 36 536-575 493-528 (594)
95 KOG4643 Uncharacterized coiled 90.4 62 0.0013 41.2 23.8 25 327-351 248-272 (1195)
96 KOG1029 Endocytic adaptor prot 90.2 26 0.00056 43.1 20.0 16 84-99 72-87 (1118)
97 PF15070 GOLGA2L5: Putative go 89.9 54 0.0012 40.1 23.0 24 365-388 47-70 (617)
98 KOG0994 Extracellular matrix g 89.7 30 0.00066 44.3 20.5 24 368-391 1464-1487(1758)
99 KOG0976 Rho/Rac1-interacting s 89.6 63 0.0014 40.1 24.2 18 540-557 454-471 (1265)
100 PRK09039 hypothetical protein; 89.5 18 0.00038 41.0 17.5 18 322-342 12-29 (343)
101 PRK02224 chromosome segregatio 89.4 69 0.0015 40.3 26.0 21 365-385 472-492 (880)
102 PRK06620 hypothetical protein; 89.0 0.17 3.8E-06 52.9 1.2 50 63-116 10-62 (214)
103 KOG1937 Uncharacterized conser 89.0 52 0.0011 38.4 24.4 43 464-506 386-428 (521)
104 COG1579 Zn-ribbon protein, pos 88.8 7.9 0.00017 41.6 13.3 10 576-585 197-206 (239)
105 PF10174 Cast: RIM-binding pro 88.7 60 0.0013 40.7 22.6 86 361-446 238-328 (775)
106 PLN02939 transferase, transfer 88.6 41 0.0009 42.9 21.2 16 373-388 199-214 (977)
107 PF12325 TMF_TATA_bd: TATA ele 88.5 16 0.00034 35.4 13.9 37 462-498 77-113 (120)
108 PF04111 APG6: Autophagy prote 88.4 9.5 0.00021 42.5 14.3 29 565-593 179-207 (314)
109 KOG0979 Structural maintenance 88.1 74 0.0016 40.5 22.4 37 528-564 325-361 (1072)
110 KOG4302 Microtubule-associated 87.9 40 0.00086 41.3 19.8 35 526-560 231-265 (660)
111 PF08317 Spc7: Spc7 kinetochor 87.9 49 0.0011 37.0 19.6 19 565-583 282-300 (325)
112 PRK04778 septation ring format 87.7 72 0.0016 38.5 25.4 23 424-446 315-337 (569)
113 PRK14086 dnaA chromosomal repl 87.7 0.32 6.9E-06 58.5 2.3 51 63-116 282-332 (617)
114 PF09730 BicD: Microtubule-ass 87.5 50 0.0011 41.0 20.5 36 473-508 113-148 (717)
115 KOG0612 Rho-associated, coiled 87.4 86 0.0019 40.8 22.6 19 366-384 463-481 (1317)
116 PF05667 DUF812: Protein of un 87.4 79 0.0017 38.5 23.4 41 465-505 489-529 (594)
117 COG2804 PulE Type II secretory 86.8 0.31 6.6E-06 57.0 1.5 30 88-117 248-277 (500)
118 TIGR00362 DnaA chromosomal rep 86.6 0.48 1E-05 54.0 2.9 50 63-115 104-153 (405)
119 PRK12377 putative replication 86.4 0.43 9.3E-06 51.3 2.3 49 66-116 71-119 (248)
120 PRK14088 dnaA chromosomal repl 86.3 0.48 1E-05 55.0 2.8 49 63-115 99-147 (440)
121 KOG1853 LIS1-interacting prote 86.2 45 0.00098 36.1 16.8 18 428-445 61-78 (333)
122 PRK08084 DNA replication initi 85.9 0.57 1.2E-05 49.5 2.9 48 63-116 16-63 (235)
123 PRK00149 dnaA chromosomal repl 85.8 0.55 1.2E-05 54.4 2.9 50 63-115 116-165 (450)
124 PF13851 GAS: Growth-arrest sp 85.7 49 0.0011 34.6 24.5 20 552-571 164-183 (201)
125 TIGR02928 orc1/cdc6 family rep 85.7 1.2 2.6E-05 49.4 5.5 21 95-115 37-57 (365)
126 PRK08116 hypothetical protein; 85.7 0.4 8.7E-06 51.9 1.7 51 64-116 80-132 (268)
127 PRK06835 DNA replication prote 85.5 0.38 8.2E-06 53.8 1.4 31 86-117 172-202 (329)
128 PRK11281 hypothetical protein; 85.4 1.3E+02 0.0029 39.3 24.1 24 541-564 312-335 (1113)
129 PRK09087 hypothetical protein; 85.0 0.53 1.2E-05 49.7 2.2 48 63-116 15-62 (226)
130 PRK05642 DNA replication initi 84.5 0.85 1.8E-05 48.3 3.4 49 63-115 13-62 (234)
131 KOG4360 Uncharacterized coiled 84.4 31 0.00068 40.6 15.8 84 364-452 162-245 (596)
132 PRK06526 transposase; Provisio 84.3 0.5 1.1E-05 50.9 1.6 45 68-117 73-117 (254)
133 COG1474 CDC6 Cdc6-related prot 84.2 1.5 3.3E-05 49.8 5.4 37 90-140 33-70 (366)
134 PF09755 DUF2046: Uncharacteri 84.1 77 0.0017 35.4 24.5 30 533-562 161-191 (310)
135 PRK14087 dnaA chromosomal repl 84.0 0.66 1.4E-05 54.0 2.6 48 65-115 111-158 (450)
136 PRK07952 DNA replication prote 84.0 0.73 1.6E-05 49.5 2.6 51 64-116 67-117 (244)
137 PF06160 EzrA: Septation ring 83.9 83 0.0018 37.9 20.1 22 430-451 275-296 (560)
138 PF04851 ResIII: Type III rest 83.8 0.59 1.3E-05 45.6 1.8 32 86-117 12-44 (184)
139 KOG0933 Structural maintenance 83.4 1.5E+02 0.0032 38.1 22.0 25 527-551 821-845 (1174)
140 TIGR03007 pepcterm_ChnLen poly 82.9 1E+02 0.0023 36.1 26.0 67 314-386 118-186 (498)
141 KOG1655 Protein involved in va 82.8 62 0.0013 33.9 15.6 27 363-389 28-54 (218)
142 TIGR02680 conserved hypothetic 82.8 1.4E+02 0.003 40.0 22.9 47 465-511 281-327 (1353)
143 KOG0995 Centromere-associated 82.6 1.2E+02 0.0026 36.5 24.7 31 529-559 440-470 (581)
144 TIGR03185 DNA_S_dndD DNA sulfu 82.5 1.3E+02 0.0028 36.9 21.9 16 100-115 30-45 (650)
145 COG3883 Uncharacterized protei 82.4 82 0.0018 34.5 17.9 33 474-506 73-105 (265)
146 cd00009 AAA The AAA+ (ATPases 82.3 0.9 1.9E-05 41.8 2.3 19 97-115 18-36 (151)
147 COG1340 Uncharacterized archae 82.3 88 0.0019 34.8 26.1 82 480-561 157-240 (294)
148 PF12718 Tropomyosin_1: Tropom 82.0 57 0.0012 32.4 20.6 13 493-505 78-90 (143)
149 PRK08903 DnaA regulatory inact 82.0 1.3 2.9E-05 46.0 3.7 48 63-115 12-59 (227)
150 PRK00411 cdc6 cell division co 82.0 1.2 2.5E-05 50.2 3.5 21 95-115 52-72 (394)
151 PF10174 Cast: RIM-binding pro 81.9 1.3E+02 0.0029 37.8 21.0 29 533-561 229-257 (775)
152 KOG1853 LIS1-interacting prote 81.7 84 0.0018 34.2 18.7 18 484-501 108-125 (333)
153 COG3096 MukB Uncharacterized p 81.7 1.5E+02 0.0032 36.9 23.8 43 532-574 637-679 (1480)
154 PF03938 OmpH: Outer membrane 81.1 40 0.00086 33.1 13.5 29 545-579 105-133 (158)
155 TIGR00634 recN DNA repair prot 80.9 33 0.00072 41.1 15.3 18 95-115 22-39 (563)
156 PF15619 Lebercilin: Ciliary p 80.9 76 0.0016 33.2 19.2 29 463-491 121-149 (194)
157 PF14662 CCDC155: Coiled-coil 80.8 77 0.0017 33.1 22.6 23 364-386 4-26 (193)
158 PF04111 APG6: Autophagy prote 80.8 27 0.0006 38.9 13.5 11 575-585 149-159 (314)
159 KOG4360 Uncharacterized coiled 80.7 1.3E+02 0.0028 35.8 19.9 31 525-555 272-302 (596)
160 KOG2129 Uncharacterized conser 80.5 95 0.0021 36.0 17.3 23 535-557 286-308 (552)
161 PRK10929 putative mechanosensi 80.2 2E+02 0.0044 37.6 28.9 23 364-386 68-90 (1109)
162 TIGR03420 DnaA_homol_Hda DnaA 80.1 1.7 3.8E-05 44.7 3.7 47 63-115 9-55 (226)
163 PF10146 zf-C4H2: Zinc finger- 80.0 43 0.00093 35.9 14.1 39 467-505 39-77 (230)
164 PF05673 DUF815: Protein of un 80.0 2.1 4.6E-05 46.1 4.3 130 65-225 23-155 (249)
165 PF06785 UPF0242: Uncharacteri 79.9 1.1E+02 0.0024 34.5 17.3 59 482-548 149-207 (401)
166 KOG4643 Uncharacterized coiled 79.8 1.9E+02 0.0042 37.1 27.0 55 514-571 467-521 (1195)
167 PF12325 TMF_TATA_bd: TATA ele 79.8 61 0.0013 31.4 14.7 25 362-386 17-41 (120)
168 PRK08181 transposase; Validate 79.1 1.3 2.9E-05 48.1 2.6 21 95-117 105-125 (269)
169 KOG4674 Uncharacterized conser 79.1 2.6E+02 0.0057 38.3 26.1 56 330-388 1146-1201(1822)
170 PF10168 Nup88: Nuclear pore c 78.9 1.2E+02 0.0026 37.8 19.3 14 12-25 124-137 (717)
171 TIGR03185 DNA_S_dndD DNA sulfu 78.4 44 0.00096 40.8 15.5 17 369-385 399-415 (650)
172 PF06785 UPF0242: Uncharacteri 78.3 74 0.0016 35.8 15.3 24 364-387 95-118 (401)
173 KOG4302 Microtubule-associated 78.2 32 0.0007 42.1 13.8 38 521-558 160-197 (660)
174 PF10168 Nup88: Nuclear pore c 77.8 1.9E+02 0.0042 36.1 21.0 34 168-201 367-405 (717)
175 PRK08939 primosomal protein Dn 77.7 1.2 2.6E-05 49.3 1.7 52 65-117 123-175 (306)
176 PRK08727 hypothetical protein; 77.6 1.6 3.4E-05 46.2 2.5 45 63-115 13-58 (233)
177 KOG4673 Transcription factor T 77.3 1.9E+02 0.0041 35.7 20.4 33 529-561 496-528 (961)
178 cd00046 DEXDc DEAD-like helica 77.0 0.86 1.9E-05 41.4 0.3 17 101-117 3-19 (144)
179 KOG0249 LAR-interacting protei 76.8 2E+02 0.0043 35.7 19.4 27 360-386 104-130 (916)
180 KOG0243 Kinesin-like protein [ 76.6 2.4E+02 0.0052 36.5 22.7 20 542-561 571-590 (1041)
181 TIGR03007 pepcterm_ChnLen poly 76.4 1.6E+02 0.0035 34.4 22.9 19 369-387 162-180 (498)
182 KOG0933 Structural maintenance 76.3 2.4E+02 0.0052 36.3 25.8 23 186-208 549-571 (1174)
183 PF08614 ATG16: Autophagy prot 76.3 35 0.00075 35.3 11.9 13 370-382 33-45 (194)
184 PRK10436 hypothetical protein; 76.2 1.1 2.3E-05 52.6 0.8 28 89-116 209-236 (462)
185 COG0593 DnaA ATPase involved i 76.1 1.5 3.3E-05 50.4 2.0 51 63-116 81-131 (408)
186 PTZ00112 origin recognition co 76.1 3.2 6.9E-05 52.0 4.8 21 95-115 778-798 (1164)
187 PLN03229 acetyl-coenzyme A car 75.9 1E+02 0.0022 38.4 16.9 35 537-571 600-634 (762)
188 TIGR02538 type_IV_pilB type IV 75.8 1.1 2.4E-05 53.7 0.8 28 89-116 307-334 (564)
189 PF09789 DUF2353: Uncharacteri 75.5 1.1E+02 0.0024 34.5 16.0 25 363-387 88-112 (319)
190 PF13245 AAA_19: Part of AAA d 75.4 1.3 2.7E-05 39.1 0.9 26 90-116 3-28 (76)
191 COG1484 DnaC DNA replication p 75.4 2.4 5.2E-05 45.7 3.2 51 64-117 74-124 (254)
192 PF00261 Tropomyosin: Tropomyo 75.3 1.2E+02 0.0026 32.3 17.8 18 369-386 2-19 (237)
193 KOG0979 Structural maintenance 75.0 2.6E+02 0.0056 36.0 22.6 38 102-140 46-87 (1072)
194 PF14662 CCDC155: Coiled-coil 74.8 1.1E+02 0.0025 31.9 24.1 21 365-385 12-32 (193)
195 PRK10929 putative mechanosensi 74.5 2.2E+02 0.0048 37.3 20.5 41 536-576 384-424 (1109)
196 PF12718 Tropomyosin_1: Tropom 74.4 95 0.0021 30.8 17.7 39 463-501 76-114 (143)
197 COG2433 Uncharacterized conser 74.3 89 0.0019 37.9 15.6 16 123-138 164-179 (652)
198 PRK11281 hypothetical protein; 74.3 1.6E+02 0.0035 38.6 19.2 16 489-504 164-179 (1113)
199 PF15070 GOLGA2L5: Putative go 74.2 2.2E+02 0.0048 34.9 25.7 12 799-810 598-609 (617)
200 KOG0946 ER-Golgi vesicle-tethe 73.8 2.5E+02 0.0054 35.4 19.8 21 364-384 660-680 (970)
201 smart00382 AAA ATPases associa 73.8 1.3 2.7E-05 40.1 0.5 17 99-115 3-19 (148)
202 PF00270 DEAD: DEAD/DEAH box h 73.7 1.5 3.3E-05 42.5 1.1 26 90-117 8-33 (169)
203 PLN02939 transferase, transfer 73.7 2.7E+02 0.0058 36.0 20.4 60 490-549 326-390 (977)
204 TIGR02533 type_II_gspE general 73.7 1.5 3.2E-05 51.6 1.2 28 89-116 233-260 (486)
205 KOG0018 Structural maintenance 73.5 2.8E+02 0.0062 35.9 22.4 12 104-115 31-42 (1141)
206 TIGR01843 type_I_hlyD type I s 73.4 1.6E+02 0.0036 33.1 22.1 19 366-384 79-97 (423)
207 KOG0804 Cytoplasmic Zn-finger 73.2 1E+02 0.0023 36.0 15.3 26 524-549 431-456 (493)
208 PF13514 AAA_27: AAA domain 73.0 3E+02 0.0066 36.0 23.3 13 103-115 1-13 (1111)
209 PRK01156 chromosome segregatio 72.7 2.7E+02 0.0059 35.3 23.8 16 100-115 25-40 (895)
210 KOG0978 E3 ubiquitin ligase in 72.6 2.5E+02 0.0055 34.9 24.3 16 551-566 610-625 (698)
211 cd01131 PilT Pilus retraction 72.5 1.4 3.1E-05 45.3 0.6 17 99-115 2-18 (198)
212 KOG4674 Uncharacterized conser 72.4 3.8E+02 0.0083 36.9 23.1 78 484-561 1177-1262(1822)
213 KOG0989 Replication factor C, 72.4 2.5 5.3E-05 47.0 2.4 42 74-115 32-74 (346)
214 PF05911 DUF869: Plant protein 72.1 1.9E+02 0.0041 36.5 18.4 31 475-505 660-690 (769)
215 PF00437 T2SE: Type II/IV secr 72.1 1.3 2.8E-05 47.4 0.2 27 88-115 118-144 (270)
216 PF13401 AAA_22: AAA domain; P 71.9 1.3 2.7E-05 41.4 0.0 18 98-115 4-21 (131)
217 PRK12422 chromosomal replicati 71.7 2.9 6.2E-05 48.8 2.9 50 63-115 105-158 (445)
218 TIGR01420 pilT_fam pilus retra 71.6 1.8 3.9E-05 48.5 1.2 29 88-116 112-140 (343)
219 PF01637 Arch_ATPase: Archaeal 70.9 1.9 4.1E-05 43.7 1.1 29 87-115 9-37 (234)
220 PTZ00454 26S protease regulato 70.8 2.9 6.2E-05 48.1 2.6 52 64-115 140-196 (398)
221 PTZ00361 26 proteosome regulat 70.6 4.9 0.00011 46.8 4.5 99 16-115 128-234 (438)
222 TIGR02525 plasmid_TraJ plasmid 70.4 2 4.4E-05 48.9 1.3 19 97-115 148-166 (372)
223 TIGR02524 dot_icm_DotB Dot/Icm 70.3 2 4.4E-05 48.6 1.3 22 94-115 130-151 (358)
224 smart00053 DYNc Dynamin, GTPas 70.2 8.8 0.00019 41.2 6.0 54 189-257 85-138 (240)
225 PF01935 DUF87: Domain of unkn 70.2 1.6 3.5E-05 45.4 0.4 15 101-115 26-40 (229)
226 TIGR01242 26Sp45 26S proteasom 70.0 5.5 0.00012 44.8 4.6 52 64-115 117-173 (364)
227 PF15397 DUF4618: Domain of un 69.9 1.5E+02 0.0032 32.6 15.0 19 487-505 192-210 (258)
228 PRK06921 hypothetical protein; 69.8 2.9 6.3E-05 45.3 2.3 31 86-116 102-135 (266)
229 TIGR00631 uvrb excinuclease AB 69.6 5.2 0.00011 48.9 4.5 89 67-160 3-98 (655)
230 PF12846 AAA_10: AAA-like doma 69.5 1.7 3.8E-05 46.0 0.5 19 98-116 1-19 (304)
231 cd01129 PulE-GspE PulE/GspE Th 69.1 2.3 5E-05 46.0 1.3 26 91-116 73-98 (264)
232 PRK10869 recombination and rep 69.1 1.5E+02 0.0033 35.7 16.5 18 95-115 22-39 (553)
233 PRK10884 SH3 domain-containing 68.9 53 0.0012 34.6 11.2 23 366-388 91-113 (206)
234 COG4026 Uncharacterized protei 68.4 1E+02 0.0022 33.0 12.8 39 470-508 152-190 (290)
235 KOG0240 Kinesin (SMY1 subfamil 68.3 2.2E+02 0.0048 34.4 16.9 30 68-97 49-78 (607)
236 PF01695 IstB_IS21: IstB-like 67.4 3.7 8E-05 41.8 2.3 19 99-117 48-66 (178)
237 PF09731 Mitofilin: Mitochondr 67.0 2.9E+02 0.0062 33.3 24.7 22 365-386 248-269 (582)
238 PF13166 AAA_13: AAA domain 66.8 3.1E+02 0.0067 33.6 24.4 14 100-113 18-31 (712)
239 PF10267 Tmemb_cc2: Predicted 66.7 1.1E+02 0.0025 35.3 14.1 77 489-583 252-332 (395)
240 PF12004 DUF3498: Domain of un 66.5 1.9 4.1E-05 50.7 0.0 65 482-550 409-473 (495)
241 PF13604 AAA_30: AAA domain; P 66.1 2.6 5.7E-05 43.4 1.0 26 90-115 10-35 (196)
242 smart00787 Spc7 Spc7 kinetocho 66.1 2.3E+02 0.0049 31.8 18.1 6 281-286 52-57 (312)
243 PF00261 Tropomyosin: Tropomyo 66.1 1.9E+02 0.0041 30.9 20.3 21 366-386 6-26 (237)
244 PF10186 Atg14: UV radiation r 66.0 1.9E+02 0.0042 31.0 19.4 20 486-505 82-101 (302)
245 PF13191 AAA_16: AAA ATPase do 65.9 2.7 5.8E-05 41.4 1.0 39 87-139 13-51 (185)
246 PRK03992 proteasome-activating 65.9 4.3 9.3E-05 46.4 2.7 51 65-115 127-182 (389)
247 TIGR01005 eps_transp_fam exopo 65.9 3E+02 0.0066 34.2 18.8 17 272-288 79-95 (754)
248 COG5008 PilU Tfp pilus assembl 65.8 3.5 7.5E-05 45.1 1.8 31 86-116 115-145 (375)
249 PRK15422 septal ring assembly 65.6 58 0.0013 29.3 9.0 54 478-543 15-68 (79)
250 KOG4593 Mitotic checkpoint pro 65.6 3.4E+02 0.0073 33.6 21.2 16 274-289 61-76 (716)
251 PRK09183 transposase/IS protei 65.6 4.2 9E-05 43.9 2.4 44 68-116 77-120 (259)
252 KOG0249 LAR-interacting protei 65.5 2.1E+02 0.0045 35.6 16.1 15 429-443 166-180 (916)
253 PF11932 DUF3450: Protein of u 65.5 2E+02 0.0043 30.9 18.3 34 549-582 131-171 (251)
254 PF05970 PIF1: PIF1-like helic 65.3 3.9 8.5E-05 46.2 2.2 36 76-115 4-39 (364)
255 PRK14474 F0F1 ATP synthase sub 65.2 2E+02 0.0043 31.2 15.0 13 549-561 148-160 (250)
256 PF13086 AAA_11: AAA domain; P 64.9 3.2 6.9E-05 42.0 1.3 26 90-116 10-35 (236)
257 KOG0804 Cytoplasmic Zn-finger 64.9 2.4E+02 0.0053 33.1 16.0 40 188-232 120-159 (493)
258 PF15066 CAGE1: Cancer-associa 64.8 2.9E+02 0.0064 32.6 20.5 6 79-84 54-59 (527)
259 cd01382 MYSc_type_VI Myosin mo 64.7 39 0.00085 41.9 10.7 34 81-115 74-108 (717)
260 TIGR03015 pepcterm_ATPase puta 64.4 3.4 7.3E-05 43.7 1.4 22 94-115 39-60 (269)
261 KOG4721 Serine/threonine prote 64.1 3.5E+02 0.0075 33.3 18.5 22 663-684 556-577 (904)
262 COG4942 Membrane-bound metallo 64.1 2.9E+02 0.0063 32.3 26.7 25 524-548 220-244 (420)
263 PF00004 AAA: ATPase family as 63.7 2.7 5.9E-05 38.8 0.5 15 101-115 1-15 (132)
264 smart00242 MYSc Myosin. Large 63.5 39 0.00084 41.7 10.3 35 80-115 74-109 (677)
265 PF15035 Rootletin: Ciliary ro 63.5 1.9E+02 0.0041 30.0 18.2 22 364-385 19-40 (182)
266 PF00448 SRP54: SRP54-type pro 63.4 2.6 5.7E-05 43.6 0.3 16 100-115 3-18 (196)
267 PF09730 BicD: Microtubule-ass 63.3 3.6E+02 0.0077 33.8 18.2 22 470-491 93-114 (717)
268 PRK10361 DNA recombination pro 63.3 3.2E+02 0.0069 32.5 21.4 10 556-565 212-221 (475)
269 KOG2911 Uncharacterized conser 63.2 3E+02 0.0066 32.2 17.0 48 86-140 45-92 (439)
270 COG1201 Lhr Lhr-like helicases 62.8 6.6 0.00014 49.0 3.6 23 90-114 31-53 (814)
271 PLN00020 ribulose bisphosphate 62.5 6.6 0.00014 45.0 3.3 51 63-113 109-163 (413)
272 KOG1899 LAR transmembrane tyro 62.3 3.7E+02 0.0081 33.0 17.2 12 676-687 414-425 (861)
273 KOG4403 Cell surface glycoprot 62.1 2.2E+02 0.0048 33.3 14.9 23 578-600 425-447 (575)
274 PF00038 Filament: Intermediat 62.0 2.4E+02 0.0053 30.8 26.3 28 363-390 13-40 (312)
275 COG3074 Uncharacterized protei 61.9 94 0.002 27.5 9.3 30 478-507 15-44 (79)
276 PRK12402 replication factor C 61.9 5.1 0.00011 43.8 2.3 42 66-115 12-53 (337)
277 COG4477 EzrA Negative regulato 61.7 3.5E+02 0.0077 32.6 19.2 40 407-448 257-296 (570)
278 PRK13894 conjugal transfer ATP 61.7 4.1 8.8E-05 45.5 1.5 27 88-115 139-165 (319)
279 PF07106 TBPIP: Tat binding pr 61.2 1E+02 0.0022 31.1 11.3 55 480-537 78-132 (169)
280 KOG0612 Rho-associated, coiled 61.1 5.2E+02 0.011 34.2 22.9 20 96-115 86-105 (1317)
281 TIGR02782 TrbB_P P-type conjug 61.0 3.5 7.7E-05 45.5 0.9 27 88-115 123-149 (299)
282 PRK13900 type IV secretion sys 61.0 4.6 0.0001 45.3 1.8 28 87-115 150-177 (332)
283 PF13479 AAA_24: AAA domain 61.0 3.7 7.9E-05 42.8 0.9 20 98-117 3-22 (213)
284 PF10234 Cluap1: Clusterin-ass 60.6 2.7E+02 0.0058 30.7 16.2 14 369-383 136-149 (267)
285 cd00124 MYSc Myosin motor doma 59.6 32 0.0007 42.4 8.7 35 80-115 68-103 (679)
286 TIGR01000 bacteriocin_acc bact 59.5 3.4E+02 0.0074 31.7 22.7 22 365-386 101-122 (457)
287 PF13207 AAA_17: AAA domain; P 58.9 4.4 9.5E-05 37.4 1.0 16 100-115 1-16 (121)
288 KOG2398 Predicted proline-seri 58.9 4.3E+02 0.0092 32.6 22.7 55 529-586 168-227 (611)
289 PRK09343 prefoldin subunit bet 58.8 1.8E+02 0.0038 28.1 15.3 28 482-509 86-113 (121)
290 cd01377 MYSc_type_II Myosin mo 58.6 50 0.0011 40.8 10.2 35 80-115 73-108 (693)
291 KOG0963 Transcription factor/C 58.3 4.3E+02 0.0093 32.4 20.0 31 477-507 313-343 (629)
292 PF15397 DUF4618: Domain of un 58.1 2.9E+02 0.0062 30.3 22.7 31 528-558 186-216 (258)
293 PRK12723 flagellar biosynthesi 57.8 8.4 0.00018 44.2 3.2 18 98-115 174-191 (388)
294 KOG2751 Beclin-like protein [S 57.7 3.7E+02 0.0081 31.5 18.1 30 568-597 315-344 (447)
295 COG3883 Uncharacterized protei 57.4 3E+02 0.0065 30.3 23.9 18 491-508 172-189 (265)
296 TIGR02680 conserved hypothetic 57.4 6.3E+02 0.014 34.1 24.0 17 369-385 743-759 (1353)
297 PF00038 Filament: Intermediat 57.3 2.9E+02 0.0063 30.2 24.9 17 366-382 122-138 (312)
298 KOG1937 Uncharacterized conser 57.3 3.9E+02 0.0084 31.6 21.4 9 311-319 194-202 (521)
299 smart00487 DEXDc DEAD-like hel 57.1 5.6 0.00012 38.5 1.4 18 100-117 26-43 (201)
300 cd01130 VirB11-like_ATPase Typ 56.8 5.6 0.00012 40.3 1.4 26 89-115 17-42 (186)
301 TIGR02231 conserved hypothetic 56.4 1.3E+02 0.0027 35.9 12.7 38 472-509 136-173 (525)
302 KOG4787 Uncharacterized conser 56.3 4.5E+02 0.0098 32.0 16.8 97 406-508 445-542 (852)
303 PRK13833 conjugal transfer pro 55.9 6.9 0.00015 43.9 2.0 16 100-115 146-161 (323)
304 COG2433 Uncharacterized conser 55.8 1.8E+02 0.0039 35.4 13.4 30 479-508 434-463 (652)
305 COG3206 GumC Uncharacterized p 55.4 4E+02 0.0086 31.1 23.5 23 570-592 398-420 (458)
306 cd01378 MYSc_type_I Myosin mot 55.4 37 0.0008 41.9 8.2 35 80-115 68-103 (674)
307 KOG0963 Transcription factor/C 55.4 4.8E+02 0.01 32.0 22.1 26 470-495 238-263 (629)
308 KOG0018 Structural maintenance 55.0 6.1E+02 0.013 33.1 21.7 40 310-349 89-128 (1141)
309 TIGR02338 gimC_beta prefoldin, 54.9 1.9E+02 0.004 27.2 14.5 33 476-508 76-108 (110)
310 PF15066 CAGE1: Cancer-associa 54.9 4.3E+02 0.0093 31.4 23.6 7 245-251 225-231 (527)
311 PF12795 MscS_porin: Mechanose 54.9 2.9E+02 0.0063 29.4 21.9 62 483-549 152-213 (240)
312 PF00580 UvrD-helicase: UvrD/R 54.8 4.4 9.4E-05 43.2 0.2 20 97-116 12-31 (315)
313 TIGR03321 alt_F1F0_F0_B altern 54.0 3.1E+02 0.0067 29.4 15.3 26 547-574 146-171 (246)
314 PF00910 RNA_helicase: RNA hel 54.0 4 8.7E-05 37.8 -0.2 26 101-136 1-26 (107)
315 PTZ00464 SNF-7-like protein; P 54.0 3E+02 0.0064 29.3 16.7 23 364-386 28-50 (211)
316 PHA02544 44 clamp loader, smal 53.9 6.9 0.00015 42.7 1.6 21 95-115 39-60 (316)
317 PHA00729 NTP-binding motif con 53.9 9.6 0.00021 40.7 2.6 30 86-115 5-34 (226)
318 COG4962 CpaF Flp pilus assembl 53.9 6.3 0.00014 44.5 1.3 25 91-116 167-191 (355)
319 KOG0995 Centromere-associated 53.6 4.9E+02 0.011 31.6 26.9 34 320-355 147-180 (581)
320 COG4372 Uncharacterized protei 53.6 4.1E+02 0.009 30.8 26.4 34 528-561 238-271 (499)
321 PF13671 AAA_33: AAA domain; P 53.6 6 0.00013 37.5 1.0 14 101-114 2-15 (143)
322 KOG4809 Rab6 GTPase-interactin 53.6 4.8E+02 0.01 31.6 21.6 77 480-561 330-406 (654)
323 KOG3850 Predicted membrane pro 53.5 2.7E+02 0.0057 32.2 13.6 29 538-569 335-363 (455)
324 PF10186 Atg14: UV radiation r 53.3 3.1E+02 0.0068 29.3 20.1 34 472-505 75-108 (302)
325 PRK00846 hypothetical protein; 53.3 85 0.0018 28.2 8.0 55 524-582 9-63 (77)
326 PF07728 AAA_5: AAA domain (dy 53.0 4.7 0.0001 38.4 0.1 15 101-115 2-16 (139)
327 cd01384 MYSc_type_XI Myosin mo 52.9 43 0.00092 41.4 8.2 21 95-115 85-105 (674)
328 PRK14143 heat shock protein Gr 52.8 2.2E+02 0.0049 30.7 12.6 14 565-578 155-168 (238)
329 PF11932 DUF3450: Protein of u 52.8 3.2E+02 0.0069 29.3 15.0 10 576-585 174-183 (251)
330 PF01580 FtsK_SpoIIIE: FtsK/Sp 52.5 4.7 0.0001 41.2 0.1 16 100-115 40-55 (205)
331 PRK06547 hypothetical protein; 52.4 11 0.00024 38.2 2.7 28 88-115 5-32 (172)
332 PRK09841 cryptic autophosphory 52.1 5.6E+02 0.012 31.9 18.0 17 87-103 97-113 (726)
333 cd00268 DEADc DEAD-box helicas 52.0 8.1 0.00018 38.9 1.7 21 92-114 32-52 (203)
334 PRK00106 hypothetical protein; 51.9 5.1E+02 0.011 31.4 20.3 20 539-558 178-197 (535)
335 PF08702 Fib_alpha: Fibrinogen 51.7 2.6E+02 0.0057 27.9 15.9 33 477-509 100-132 (146)
336 PRK13851 type IV secretion sys 51.6 5.6 0.00012 44.9 0.5 27 88-115 153-179 (344)
337 KOG0288 WD40 repeat protein Ti 51.6 4.6E+02 0.0099 30.7 15.2 22 636-661 284-305 (459)
338 PF09738 DUF2051: Double stran 51.6 1.9E+02 0.0041 32.4 12.2 13 570-582 168-180 (302)
339 COG1222 RPT1 ATP-dependent 26S 51.5 23 0.00051 40.4 5.2 128 12-140 92-244 (406)
340 PF03962 Mnd1: Mnd1 family; I 51.3 2.5E+02 0.0054 29.1 12.4 85 474-558 62-151 (188)
341 PF11559 ADIP: Afadin- and alp 51.3 2.5E+02 0.0054 27.6 14.3 20 485-504 130-149 (151)
342 KOG0962 DNA repair protein RAD 51.2 7.5E+02 0.016 33.1 21.3 11 533-543 976-986 (1294)
343 KOG0727 26S proteasome regulat 51.1 24 0.00053 38.5 5.0 71 70-140 156-248 (408)
344 PF04048 Sec8_exocyst: Sec8 ex 50.8 1.5E+02 0.0031 29.3 10.2 82 488-573 40-127 (142)
345 PRK09841 cryptic autophosphory 50.8 5E+02 0.011 32.4 17.1 29 314-342 224-252 (726)
346 PF05701 WEMBL: Weak chloropla 50.7 5.2E+02 0.011 31.0 22.2 190 367-561 171-377 (522)
347 PF13238 AAA_18: AAA domain; P 50.5 6.7 0.00015 36.0 0.7 15 101-115 1-15 (129)
348 PF08317 Spc7: Spc7 kinetochor 50.4 4.1E+02 0.0088 29.8 24.8 15 560-574 270-284 (325)
349 PF15294 Leu_zip: Leucine zipp 50.3 4E+02 0.0086 29.6 15.3 21 366-386 130-150 (278)
350 PF10191 COG7: Golgi complex c 50.2 6.3E+02 0.014 31.9 21.1 35 528-562 208-242 (766)
351 PF08614 ATG16: Autophagy prot 50.2 2.7E+02 0.0059 28.7 12.5 23 486-508 156-178 (194)
352 smart00763 AAA_PrkA PrkA AAA d 50.1 28 0.00062 39.7 5.7 47 64-114 44-94 (361)
353 TIGR03499 FlhF flagellar biosy 49.7 6.5 0.00014 42.9 0.6 17 100-116 196-212 (282)
354 PF07724 AAA_2: AAA domain (Cd 49.7 7.3 0.00016 39.5 0.9 17 99-115 4-20 (171)
355 KOG4787 Uncharacterized conser 49.4 5.7E+02 0.012 31.2 17.2 112 465-585 442-564 (852)
356 cd01380 MYSc_type_V Myosin mot 49.4 71 0.0015 39.6 9.4 34 81-115 69-103 (691)
357 PF07693 KAP_NTPase: KAP famil 49.3 32 0.0007 37.4 5.9 58 82-153 4-61 (325)
358 KOG0651 26S proteasome regulat 49.3 13 0.00027 41.8 2.6 98 16-113 78-181 (388)
359 PF02562 PhoH: PhoH-like prote 49.2 9.5 0.00021 40.1 1.7 19 97-115 18-36 (205)
360 PRK01156 chromosome segregatio 49.0 6.7E+02 0.014 31.9 27.8 16 367-382 422-437 (895)
361 PF06309 Torsin: Torsin; Inte 49.0 9.5 0.00021 37.2 1.5 26 100-135 55-80 (127)
362 PTZ00424 helicase 45; Provisio 48.9 8.8 0.00019 43.2 1.5 25 89-115 58-82 (401)
363 PF03215 Rad17: Rad17 cell cyc 48.9 10 0.00022 45.2 2.0 30 86-115 31-62 (519)
364 PRK10869 recombination and rep 48.8 5.6E+02 0.012 30.9 18.6 9 424-432 190-198 (553)
365 COG5185 HEC1 Protein involved 48.5 5.4E+02 0.012 30.7 18.2 162 408-574 252-418 (622)
366 KOG2077 JNK/SAPK-associated pr 48.4 3.4E+02 0.0073 33.0 13.8 33 410-442 341-373 (832)
367 PF04012 PspA_IM30: PspA/IM30 48.4 3.4E+02 0.0074 28.3 16.7 18 490-507 93-110 (221)
368 TIGR02788 VirB11 P-type DNA tr 48.1 12 0.00026 41.4 2.3 29 86-115 133-161 (308)
369 TIGR03752 conj_TIGR03752 integ 47.6 1.8E+02 0.0039 34.4 11.6 23 423-445 70-92 (472)
370 KOG4661 Hsp27-ERE-TATA-binding 47.4 6E+02 0.013 30.9 23.5 213 516-755 655-889 (940)
371 COG1340 Uncharacterized archae 46.9 4.6E+02 0.0099 29.4 22.6 38 468-505 180-217 (294)
372 KOG0340 ATP-dependent RNA heli 46.8 32 0.0007 39.2 5.3 41 88-130 36-82 (442)
373 KOG2373 Predicted mitochondria 46.8 16 0.00034 41.5 3.0 28 88-116 261-291 (514)
374 PF14915 CCDC144C: CCDC144C pr 46.7 4.6E+02 0.01 29.4 20.4 17 367-383 5-21 (305)
375 PF06048 DUF927: Domain of unk 46.6 14 0.00031 40.3 2.7 31 84-115 180-210 (286)
376 COG1419 FlhF Flagellar GTP-bin 46.6 14 0.00031 42.5 2.7 18 98-115 203-220 (407)
377 COG1223 Predicted ATPase (AAA+ 46.6 8.1 0.00018 42.3 0.7 16 99-114 152-167 (368)
378 PF05700 BCAS2: Breast carcino 46.5 1.9E+02 0.004 30.7 10.8 81 423-505 140-220 (221)
379 PRK00440 rfc replication facto 46.4 13 0.00028 40.2 2.2 21 95-115 35-55 (319)
380 KOG2911 Uncharacterized conser 46.3 4.1E+02 0.009 31.2 14.0 20 494-513 369-388 (439)
381 TIGR02881 spore_V_K stage V sp 46.0 9.4 0.0002 40.9 1.1 18 98-115 42-59 (261)
382 PF06160 EzrA: Septation ring 45.9 6.2E+02 0.013 30.6 23.1 16 369-384 253-268 (560)
383 PF13166 AAA_13: AAA domain 45.8 6.5E+02 0.014 30.8 17.3 25 364-388 325-349 (712)
384 KOG3215 Uncharacterized conser 45.6 4E+02 0.0087 28.3 15.8 37 529-568 144-180 (222)
385 PRK13764 ATPase; Provisional 45.5 9 0.00019 46.4 0.9 19 98-116 257-275 (602)
386 PF06156 DUF972: Protein of un 45.4 1E+02 0.0023 29.2 7.8 47 407-453 10-56 (107)
387 PRK11192 ATP-dependent RNA hel 45.4 11 0.00023 43.3 1.5 22 91-114 33-54 (434)
388 PRK11776 ATP-dependent RNA hel 45.4 13 0.00028 43.1 2.2 22 91-114 36-57 (460)
389 PRK14722 flhF flagellar biosyn 44.8 8.7 0.00019 43.9 0.6 18 98-115 137-154 (374)
390 PF00063 Myosin_head: Myosin h 44.8 13 0.00028 45.7 2.1 35 80-115 67-102 (689)
391 KOG1514 Origin recognition com 44.5 22 0.00049 43.5 3.9 47 95-156 419-465 (767)
392 PF05622 HOOK: HOOK protein; 44.5 7.4 0.00016 48.0 0.0 10 128-137 36-45 (713)
393 KOG0288 WD40 repeat protein Ti 44.4 5.9E+02 0.013 29.9 17.1 37 638-676 200-241 (459)
394 PRK10328 DNA binding protein, 44.3 55 0.0012 32.3 6.0 13 675-687 107-120 (134)
395 PF08172 CASP_C: CASP C termin 44.3 3.7E+02 0.008 29.2 12.8 46 460-505 79-124 (248)
396 KOG2129 Uncharacterized conser 44.1 5.9E+02 0.013 29.9 26.2 12 277-288 45-56 (552)
397 PRK10536 hypothetical protein; 43.9 13 0.00029 40.5 1.8 41 65-115 51-91 (262)
398 PF06414 Zeta_toxin: Zeta toxi 43.8 9.3 0.0002 39.1 0.6 18 98-115 15-32 (199)
399 PRK10416 signal recognition pa 43.7 19 0.0004 40.3 3.0 17 99-115 115-131 (318)
400 PLN03025 replication factor C 43.6 15 0.00033 40.6 2.2 42 67-116 11-52 (319)
401 PF02456 Adeno_IVa2: Adenoviru 43.5 8.7 0.00019 42.9 0.3 17 100-116 89-105 (369)
402 TIGR02237 recomb_radB DNA repa 43.1 14 0.0003 37.7 1.8 25 91-115 2-29 (209)
403 COG5293 Predicted ATPase [Gene 42.9 6.5E+02 0.014 30.0 20.4 24 527-550 427-450 (591)
404 KOG4572 Predicted DNA-binding 42.8 8.2E+02 0.018 31.2 18.9 20 539-558 1089-1108(1424)
405 PF09755 DUF2046: Uncharacteri 42.8 5.4E+02 0.012 29.0 24.8 22 365-386 24-45 (310)
406 PRK04837 ATP-dependent RNA hel 42.6 12 0.00027 42.7 1.5 23 91-115 40-62 (423)
407 KOG2122 Beta-catenin-binding p 42.6 1.9E+02 0.004 38.9 11.4 56 606-672 180-235 (2195)
408 PF05729 NACHT: NACHT domain 42.6 10 0.00022 36.2 0.7 16 100-115 2-17 (166)
409 KOG0926 DEAH-box RNA helicase 42.6 16 0.00034 45.4 2.2 18 98-115 271-288 (1172)
410 PF03999 MAP65_ASE1: Microtubu 42.3 8.3 0.00018 46.8 0.0 77 482-560 222-304 (619)
411 PRK11331 5-methylcytosine-spec 42.2 17 0.00036 42.7 2.4 31 312-346 319-349 (459)
412 COG1382 GimC Prefoldin, chaper 42.2 3.4E+02 0.0073 26.5 14.6 26 483-508 86-111 (119)
413 PF14257 DUF4349: Domain of un 42.0 1.8E+02 0.0039 31.3 10.1 63 318-386 95-157 (262)
414 PF02403 Seryl_tRNA_N: Seryl-t 41.8 2.3E+02 0.005 26.1 9.6 39 472-510 27-65 (108)
415 PRK11448 hsdR type I restricti 41.7 13 0.00027 48.4 1.5 29 88-117 424-452 (1123)
416 PRK10590 ATP-dependent RNA hel 41.6 14 0.00031 42.9 1.7 24 90-115 32-55 (456)
417 PF05483 SCP-1: Synaptonemal c 41.5 8E+02 0.017 30.6 22.7 216 365-580 468-695 (786)
418 PRK04328 hypothetical protein; 41.4 17 0.00036 38.9 2.1 27 87-113 9-38 (249)
419 KOG4809 Rab6 GTPase-interactin 41.4 7.3E+02 0.016 30.1 20.4 26 531-556 531-556 (654)
420 cd01120 RecA-like_NTPases RecA 41.3 9.8 0.00021 36.0 0.3 15 101-115 2-16 (165)
421 PF13514 AAA_27: AAA domain 41.1 9.7E+02 0.021 31.5 25.7 10 66-75 87-96 (1111)
422 TIGR01241 FtsH_fam ATP-depende 41.0 11 0.00023 44.4 0.6 50 65-115 51-105 (495)
423 PRK11519 tyrosine kinase; Prov 40.7 8.2E+02 0.018 30.5 17.4 24 316-339 226-249 (719)
424 PRK13169 DNA replication intia 40.6 1.3E+02 0.0028 28.8 7.6 45 407-451 10-54 (110)
425 PF04102 SlyX: SlyX; InterPro 40.6 1.1E+02 0.0024 26.5 6.7 44 528-574 4-47 (69)
426 PRK04195 replication factor C 40.4 16 0.00035 42.9 2.0 30 86-115 26-56 (482)
427 TIGR00634 recN DNA repair prot 40.4 7.3E+02 0.016 29.9 20.1 17 417-433 187-203 (563)
428 KOG2891 Surface glycoprotein [ 40.4 5.5E+02 0.012 28.5 17.6 11 279-289 177-187 (445)
429 PRK14151 heat shock protein Gr 40.1 4E+02 0.0086 27.5 11.7 28 560-587 103-133 (176)
430 PRK15422 septal ring assembly 40.0 2.9E+02 0.0063 25.1 10.9 38 407-444 6-43 (79)
431 PRK13342 recombination factor 39.6 13 0.00028 42.7 1.0 21 95-115 33-53 (413)
432 TIGR00348 hsdR type I site-spe 39.6 17 0.00037 44.5 2.1 32 85-117 246-282 (667)
433 COG0419 SbcC ATPase involved i 39.5 9.3E+02 0.02 30.8 25.4 17 99-115 26-42 (908)
434 PF13173 AAA_14: AAA domain 39.3 12 0.00026 35.5 0.6 16 100-115 4-19 (128)
435 PF13476 AAA_23: AAA domain; P 39.2 12 0.00026 37.0 0.6 17 99-115 20-36 (202)
436 COG5019 CDC3 Septin family pro 39.2 1.2E+02 0.0025 34.9 8.3 107 95-227 20-140 (373)
437 COG4477 EzrA Negative regulato 39.1 7.8E+02 0.017 29.8 19.6 21 425-445 315-335 (570)
438 PF12775 AAA_7: P-loop contain 39.0 14 0.0003 40.3 1.0 18 98-115 33-50 (272)
439 PRK07353 F0F1 ATP synthase sub 38.9 3.6E+02 0.0079 25.9 15.2 37 465-501 34-70 (140)
440 PF15325 MRI: Modulator of ret 38.9 51 0.0011 30.8 4.4 18 606-623 68-85 (106)
441 COG1219 ClpX ATP-dependent pro 38.8 14 0.0003 41.6 1.0 15 99-113 98-112 (408)
442 cd01123 Rad51_DMC1_radA Rad51_ 38.8 17 0.00036 37.8 1.6 29 87-115 5-36 (235)
443 PRK14974 cell division protein 38.3 29 0.00063 39.1 3.5 18 98-115 140-157 (336)
444 TIGR00635 ruvB Holliday juncti 38.2 23 0.00049 38.4 2.6 38 77-115 8-47 (305)
445 PF10236 DAP3: Mitochondrial r 38.1 21 0.00044 39.7 2.2 25 92-116 17-41 (309)
446 KOG2543 Origin recognition com 38.1 12 0.00026 43.0 0.3 40 97-156 29-68 (438)
447 KOG0739 AAA+-type ATPase [Post 38.0 26 0.00056 39.2 2.9 74 68-141 132-226 (439)
448 TIGR02902 spore_lonB ATP-depen 37.9 19 0.00041 43.0 2.1 42 64-113 60-101 (531)
449 PF00735 Septin: Septin; Inte 37.8 12 0.00027 40.9 0.4 19 95-113 1-19 (281)
450 CHL00081 chlI Mg-protoporyphyr 37.7 21 0.00045 40.6 2.2 44 64-115 12-55 (350)
451 PF07989 Microtub_assoc: Micro 37.6 3E+02 0.0065 24.5 9.0 68 477-548 3-70 (75)
452 PF13555 AAA_29: P-loop contai 37.6 13 0.00029 31.8 0.5 15 101-115 26-40 (62)
453 PF08647 BRE1: BRE1 E3 ubiquit 37.6 3.3E+02 0.0072 25.1 12.2 62 484-550 20-81 (96)
454 PF05496 RuvB_N: Holliday junc 37.5 36 0.00077 36.6 3.8 40 73-113 24-65 (233)
455 TIGR02640 gas_vesic_GvpN gas v 37.5 27 0.0006 37.5 3.0 30 84-115 9-38 (262)
456 TIGR00614 recQ_fam ATP-depende 37.0 18 0.0004 42.1 1.7 24 90-115 20-43 (470)
457 PRK14148 heat shock protein Gr 37.0 5.2E+02 0.011 27.2 13.2 20 560-579 122-141 (195)
458 PF00769 ERM: Ezrin/radixin/mo 36.8 5.7E+02 0.012 27.6 17.9 13 424-436 10-22 (246)
459 KOG3838 Mannose lectin ERGIC-5 36.7 2.7E+02 0.0059 32.3 10.5 18 492-509 330-347 (497)
460 PF12240 Angiomotin_C: Angiomo 36.6 5.5E+02 0.012 27.3 14.1 57 371-435 31-87 (205)
461 TIGR00376 DNA helicase, putati 36.5 18 0.00039 44.2 1.5 17 100-116 175-191 (637)
462 PRK00080 ruvB Holliday junctio 36.4 15 0.00033 40.6 0.9 17 99-115 52-68 (328)
463 PF05769 DUF837: Protein of un 36.1 5.1E+02 0.011 26.8 19.3 53 485-538 125-177 (181)
464 KOG0239 Kinesin (KAR3 subfamil 36.0 9.6E+02 0.021 29.9 18.9 50 109-165 62-111 (670)
465 PF05010 TACC: Transforming ac 35.8 5.6E+02 0.012 27.2 18.9 139 366-513 67-207 (207)
466 TIGR02903 spore_lon_C ATP-depe 35.8 24 0.00051 43.0 2.4 43 65-115 150-192 (615)
467 KOG3091 Nuclear pore complex, 35.8 8.4E+02 0.018 29.2 17.6 16 463-478 414-429 (508)
468 TIGR01069 mutS2 MutS2 family p 35.7 4.8E+02 0.01 33.0 13.7 94 405-507 515-608 (771)
469 cd01126 TraG_VirD4 The TraG/Tr 35.7 20 0.00043 40.6 1.7 16 101-116 2-17 (384)
470 TIGR01618 phage_P_loop phage n 35.6 14 0.00031 39.2 0.4 20 98-117 12-31 (220)
471 PF14915 CCDC144C: CCDC144C pr 35.5 6.8E+02 0.015 28.1 21.8 25 361-385 56-80 (305)
472 COG2900 SlyX Uncharacterized p 35.4 2E+02 0.0043 25.7 7.3 40 527-569 7-46 (72)
473 PRK06067 flagellar accessory p 35.3 24 0.00053 36.9 2.2 29 86-114 10-41 (234)
474 PLN03229 acetyl-coenzyme A car 35.2 1E+03 0.022 30.0 16.9 19 331-349 532-550 (762)
475 TIGR02231 conserved hypothetic 35.1 2.3E+02 0.005 33.7 10.4 19 368-386 71-89 (525)
476 KOG2072 Translation initiation 35.0 1.1E+03 0.023 30.2 24.3 305 366-695 668-987 (988)
477 KOG4438 Centromere-associated 35.0 8.1E+02 0.018 28.8 19.5 19 367-385 172-190 (446)
478 PF10473 CENP-F_leu_zip: Leuci 34.9 4.8E+02 0.01 26.1 19.5 45 461-505 53-97 (140)
479 PF05557 MAD: Mitotic checkpoi 34.8 3E+02 0.0065 34.2 11.7 16 653-668 695-710 (722)
480 KOG1103 Predicted coiled-coil 34.8 7.5E+02 0.016 28.3 15.0 161 369-541 140-300 (561)
481 KOG0982 Centrosomal protein Nu 34.8 8.3E+02 0.018 28.8 20.0 11 423-433 254-264 (502)
482 PRK00131 aroK shikimate kinase 34.8 19 0.00041 35.1 1.1 15 100-114 6-20 (175)
483 PF06632 XRCC4: DNA double-str 34.7 5.6E+02 0.012 29.3 12.8 17 686-702 322-338 (342)
484 PRK09270 nucleoside triphospha 34.6 34 0.00073 35.9 3.1 36 80-115 14-50 (229)
485 KOG4572 Predicted DNA-binding 34.6 1.1E+03 0.024 30.2 20.2 168 366-547 1090-1267(1424)
486 PRK00771 signal recognition pa 34.6 37 0.00081 39.7 3.7 47 69-115 58-112 (437)
487 PF10481 CENP-F_N: Cenp-F N-te 34.5 6.9E+02 0.015 27.8 15.0 117 416-537 15-132 (307)
488 PF07851 TMPIT: TMPIT-like pro 34.4 4.3E+02 0.0093 30.0 11.7 84 416-505 1-92 (330)
489 TIGR01069 mutS2 MutS2 family p 34.4 9.9E+02 0.021 30.3 16.1 109 458-574 495-604 (771)
490 TIGR01359 UMP_CMP_kin_fam UMP- 34.4 18 0.00039 36.0 1.0 13 101-113 2-14 (183)
491 PRK05703 flhF flagellar biosyn 34.4 16 0.00034 42.5 0.6 16 100-115 223-238 (424)
492 PRK05580 primosome assembly pr 34.2 23 0.00049 43.6 2.0 40 66-112 137-176 (679)
493 TIGR01243 CDC48 AAA family ATP 34.1 18 0.00039 44.7 1.1 51 65-115 174-229 (733)
494 PRK13455 F0F1 ATP synthase sub 34.0 5.2E+02 0.011 26.3 15.2 102 461-574 52-153 (184)
495 PF06745 KaiC: KaiC; InterPro 34.0 23 0.0005 36.7 1.7 23 90-112 8-33 (226)
496 PF05622 HOOK: HOOK protein; 33.9 14 0.00029 45.7 0.0 146 362-510 268-413 (713)
497 cd01383 MYSc_type_VIII Myosin 33.7 34 0.00073 42.2 3.3 34 81-114 75-108 (677)
498 cd00632 Prefoldin_beta Prefold 33.7 3.9E+02 0.0085 24.7 13.2 102 400-501 1-104 (105)
499 COG1125 OpuBA ABC-type proline 33.7 16 0.00034 40.1 0.5 15 101-115 30-44 (309)
500 cd01850 CDC_Septin CDC/Septin. 33.7 19 0.0004 39.3 1.0 21 95-115 1-21 (276)
No 1
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.6e-91 Score=820.37 Aligned_cols=369 Identities=40% Similarity=0.640 Sum_probs=324.1
Q ss_pred CCCCCCCCCceEEEEEeCCCCCCcCC---CCeEEEeC-CcEEEEECCCCCchhhhhccccCCcceeeeeeecCCCCCcHH
Q 003511 5 SAPATKKSTTLTVAIKCRPLTEREQG---RDIVRVKH-DKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGPGCTNLD 80 (814)
Q Consensus 5 ~~p~~~~~~~IkV~VRvRPl~~~E~~---~~~v~v~~-~~~Vvv~dp~~~~~~~~~~~~~~~~k~F~FD~VF~~~atQee 80 (814)
+.+...++.+|+|+|||||++++|.. ..+|.+.+ .+.|.|-.. +.+..-.++|+||+||+|.+.|++
T Consensus 41 ~k~~~e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~---------~~sk~~~k~ftFDkVFGpes~Q~d 111 (1041)
T KOG0243|consen 41 SKDHKEKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQT---------IASKQIDKTFTFDKVFGPESQQED 111 (1041)
T ss_pred cCCCCCCCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecc---------cccccccceeecceeeCcchhHHH
Confidence 34445677999999999999999963 23455555 445666432 122234789999999999999999
Q ss_pred HHHHHHhhhHhhhccCcceEEEeeccCCCCcceeecc--------CCCCCCchhhhHHHHHHHHhhcCCCCeEEEEEEEE
Q 003511 81 VYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVG--------TKSDPGLMVLSLHTIFDLIKKDKNSDEFEVSCSYL 152 (814)
Q Consensus 81 Vy~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM~G--------~~~~~GIIpral~~LF~~i~~~~~~~~f~VsvSyl 152 (814)
||+.++.|+|..|+.|||||||||||||+||||||.| .+.++|||||++.+||+.+.... .+|.|+|||+
T Consensus 112 ~Y~~~v~p~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~--~EYsvKVSfL 189 (1041)
T KOG0243|consen 112 LYDQAVSPIIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQG--AEYSVKVSFL 189 (1041)
T ss_pred HHHHHHHHHHHHHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcC--CeEEEEEEeh
Confidence 9999999999999999999999999999999999999 46678999999999999998754 7899999999
Q ss_pred EEecceeeecccccc---CcceeeecC-----CCCeeecCeEEEEecChHHHHHHHHhhhhcCCCccccCCCCCCCCeEE
Q 003511 153 EVYNEVIYDLLEKSS---AHLELREDP-----MHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAV 224 (814)
Q Consensus 153 EIYnE~I~DLL~~~~---~~L~ired~-----~~g~~V~gLtev~V~S~ee~~~lL~~G~~~R~~~~T~~N~~SSRSHaI 224 (814)
|+|||.|+|||++.. ..+.+.+++ ++|++|.||.++.|.++.|++.+|.+|.+.|++++|.||+.|||||+|
T Consensus 190 ELYNEEl~DLLa~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsI 269 (1041)
T KOG0243|consen 190 ELYNEELTDLLASEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSI 269 (1041)
T ss_pred hhhhHHHHHhcCCccccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceE
Confidence 999999999998653 345555554 789999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeccccC-CceeEEEEEEEEcCCCcccccccCcchhhHHHHHhhHhHHHHHHHHHHhcCCCCCCCcccccccc
Q 003511 225 LEITVKRRQKTEYC-NQVMRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNS 303 (814)
Q Consensus 225 ftI~V~~~~~~~~~-~~~~~SkL~fVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~VI~aLs~~~k~~~~hIPYRdS 303 (814)
|+|+|..+..+..+ ..++.|||+||||||||..+.+|+.+.|.+|++.||+||++||+||+||.+.. .|||||+|
T Consensus 270 FsItvhike~t~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s----~HIPYRES 345 (1041)
T KOG0243|consen 270 FSITVHIKENTPEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHS----GHIPYRES 345 (1041)
T ss_pred EEEEEEEecCCCcchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccC----CCCCchHH
Confidence 99999888766543 34778999999999999999999999999999999999999999999999854 58999999
Q ss_pred hhhhhhcccCCCCcceeEEEeeCCCCCChHHHHHHHHHHHHHhhcccccccccccccccchHHHHHHHHHHHHHHHHHHH
Q 003511 304 KLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKIKTHIQKNIGSIDTHVSDYQRMIDNLQIEVCRLKKE 383 (814)
Q Consensus 304 KLTrLLkdsLGGnskT~mIatISPs~~~~eETlsTLrfA~Rak~Ikn~~~~N~~~~~~~~~~~~~~I~~L~~Ei~~Lk~e 383 (814)
||||||||||||.++|+|||||||+..+++||++||.||.|||+|+|+|.+|..- .-..+|++|-.||++||.+
T Consensus 346 KLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl------~K~~llKd~~~EIerLK~d 419 (1041)
T KOG0243|consen 346 KLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKL------MKKTLLKDLYEEIERLKRD 419 (1041)
T ss_pred HHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHH------HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998421 2246899999999999999
Q ss_pred HhccCCCCCCC
Q 003511 384 LADKDSQPSVK 394 (814)
Q Consensus 384 L~~~~~~~~~~ 394 (814)
|...+....+.
T Consensus 420 l~AaReKnGvy 430 (1041)
T KOG0243|consen 420 LAAAREKNGVY 430 (1041)
T ss_pred HHHhHhhCceE
Confidence 98877654443
No 2
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5e-91 Score=803.68 Aligned_cols=399 Identities=36% Similarity=0.565 Sum_probs=340.1
Q ss_pred CCceEEEEEeCCCCCCcCCC--CeEEEeCCcEEEEECCCCCchhhhhccccCCcceeeeeeecCCC-------CCcHHHH
Q 003511 12 STTLTVAIKCRPLTEREQGR--DIVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGPG-------CTNLDVY 82 (814)
Q Consensus 12 ~~~IkV~VRvRPl~~~E~~~--~~v~v~~~~~Vvv~dp~~~~~~~~~~~~~~~~k~F~FD~VF~~~-------atQeeVy 82 (814)
..+|+|+|||||++.+|..+ .||.-..+.++.++.|..++ ....|+||++|+.- ++|..||
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k----------~~~~FtfD~SYWS~d~edPhfAsQ~qVY 72 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSK----------DAPKFTFDYSYWSHDSEDPHFASQKQVY 72 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcc----------cCCceecceeeecCCCCCCchhhHHHHH
Confidence 46899999999999999754 34544445555555554322 23459999998754 4899999
Q ss_pred HHHHhhhHhhhccCcceEEEeeccCCCCcceeeccCC--CCCCchhhhHHHHHHHHhhcC-CCCeEEEEEEEEEEeccee
Q 003511 83 TACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTK--SDPGLMVLSLHTIFDLIKKDK-NSDEFEVSCSYLEVYNEVI 159 (814)
Q Consensus 83 ~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM~G~~--~~~GIIpral~~LF~~i~~~~-~~~~f~VsvSylEIYnE~I 159 (814)
+.++.++|+.+++|||+||||||||||||||||+|.. +++|||||+|++||.+|.... ....|.|.|||+|||||+|
T Consensus 73 edlg~~mL~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErV 152 (1221)
T KOG0245|consen 73 EDLGREMLDHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERV 152 (1221)
T ss_pred HHHhHHHHHHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHH
Confidence 9999999999999999999999999999999999988 899999999999999998644 3568999999999999999
Q ss_pred eeccc-c-ccCcceeeecCCCCeeecCeEEEEecChHHHHHHHHhhhhcCCCccccCCCCCCCCeEEEEEEEEEEecccc
Q 003511 160 YDLLE-K-SSAHLELREDPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEY 237 (814)
Q Consensus 160 ~DLL~-~-~~~~L~ired~~~g~~V~gLtev~V~S~ee~~~lL~~G~~~R~~~~T~~N~~SSRSHaIftI~V~~~~~~~~ 237 (814)
+|||+ + .++.|++||+|..|+||.+|+.+.|.|+.|+..+|..|++.|++++|+||++|||||+||+|++.++.....
T Consensus 153 rDLL~~p~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~ 232 (1221)
T KOG0245|consen 153 RDLLNAPKSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQD 232 (1221)
T ss_pred HHHhhCCCCCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeecccc
Confidence 99999 4 457899999999999999999999999999999999999999999999999999999999999999877665
Q ss_pred CC--ceeEEEEEEEEcCCCcccccccCcchhhHHHHHhhHhHHHHHHHHHHhcCCCC---CCCcccccccchhhhhhccc
Q 003511 238 CN--QVMRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQK---KGLAYVPYRNSKLTRILKDG 312 (814)
Q Consensus 238 ~~--~~~~SkL~fVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~VI~aLs~~~k---~~~~hIPYRdSKLTrLLkds 312 (814)
.+ ..++||++|||||||||++.+|+.|+|++||++||+||++||+||+||++.++ ++..+||||||.||+||+++
T Consensus 233 ~~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEn 312 (1221)
T KOG0245|consen 233 TGLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKEN 312 (1221)
T ss_pred CCCcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHh
Confidence 44 67899999999999999999999999999999999999999999999998664 44569999999999999999
Q ss_pred CCCCcceeEEEeeCCCCCChHHHHHHHHHHHHHhhcccccccccccccccchHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 003511 313 LSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKIKTHIQKNIGSIDTHVSDYQRMIDNLQIEVCRLKKELADKDSQPS 392 (814)
Q Consensus 313 LGGnskT~mIatISPs~~~~eETlsTLrfA~Rak~Ikn~~~~N~~~~~~~~~~~~~~I~~L~~Ei~~Lk~eL~~~~~~~~ 392 (814)
|||||||+|||+|||++.+|+|||+|||||+|||+|+|++++|.++ ..++|++|+.||.+||..|........
T Consensus 313 LGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdp-------naKLIRELreEv~rLksll~~~~~~~~ 385 (1221)
T KOG0245|consen 313 LGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDP-------NAKLIRELREEVARLKSLLRAQGLGDI 385 (1221)
T ss_pred cCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCc-------cHHHHHHHHHHHHHHHHHHhccccccc
Confidence 9999999999999999999999999999999999999999999754 356999999999999999987654322
Q ss_pred C---CcchhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003511 393 V---KPAEKAADDELSWLNVLSLEISENAQERINLQNALFE 430 (814)
Q Consensus 393 ~---~~~~~~~~~e~~~l~~l~~~~~e~~~e~~~lq~~l~e 430 (814)
. .|...... ..++.+.+++.+......++++.++|
T Consensus 386 ~~~~~p~~~~~~---~~~e~~~~~L~E~Ek~mael~etW~E 423 (1221)
T KOG0245|consen 386 AVEGSPSALLSQ---PEIEELRERLQETEKIMAELNETWEE 423 (1221)
T ss_pred cccCCccccccc---ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11111111 11344455555555555555555443
No 3
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.7e-90 Score=779.50 Aligned_cols=362 Identities=41% Similarity=0.614 Sum_probs=324.3
Q ss_pred CCCceEEEEEeCCCCCCcCC---CCeEEEeCC-cEEEEECCCCCchhhhhccccCCcceeeeeeecCCCCCcHHHHHHHH
Q 003511 11 KSTTLTVAIKCRPLTEREQG---RDIVRVKHD-KEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGPGCTNLDVYTACI 86 (814)
Q Consensus 11 ~~~~IkV~VRvRPl~~~E~~---~~~v~v~~~-~~Vvv~dp~~~~~~~~~~~~~~~~k~F~FD~VF~~~atQeeVy~~~v 86 (814)
...+|+|+|||||+++.+.. ..++.+... ..+.+.+|.. ......+.|+||.||+++++|++||..++
T Consensus 3 ~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~ftfD~vf~~~stQ~dvy~~~~ 74 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVA--------GIEGKPKSFTFDAVFDSDSTQDDVYQETV 74 (574)
T ss_pred cccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcc--------cccCCCCCceeeeeecCCCCHHHHHHHHh
Confidence 35789999999999998753 234555433 3445555432 22345678999999999999999999999
Q ss_pred hhhHhhhccCcceEEEeeccCCCCcceeeccC-CCCCCchhhhHHHHHHHHhhcCCCCeEEEEEEEEEEecceeeecccc
Q 003511 87 SSVISGVVQGLNATVFAYGSTGSGKTYTMVGT-KSDPGLMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEK 165 (814)
Q Consensus 87 ~plV~~vl~GyN~tIfAYGqTGSGKTyTM~G~-~~~~GIIpral~~LF~~i~~~~~~~~f~VsvSylEIYnE~I~DLL~~ 165 (814)
.|+|++|++|||+||||||||||||||||+|+ +...|||||++.+||.+|...++...|.|+|||+|||||.|+|||++
T Consensus 75 ~~lV~svl~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~ 154 (574)
T KOG4280|consen 75 APLVESVLEGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSP 154 (574)
T ss_pred HHHHHHHhcccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCc
Confidence 99999999999999999999999999999999 55679999999999999998876678999999999999999999998
Q ss_pred cc-CcceeeecCCCCeeecCeEEEEecChHHHHHHHHhhhhcCCCccccCCCCCCCCeEEEEEEEEEEec-cccCCceeE
Q 003511 166 SS-AHLELREDPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQK-TEYCNQVMR 243 (814)
Q Consensus 166 ~~-~~L~ired~~~g~~V~gLtev~V~S~ee~~~lL~~G~~~R~~~~T~~N~~SSRSHaIftI~V~~~~~-~~~~~~~~~ 243 (814)
.+ ..+.+++++..|+||+||+++.|.++++++.+|..|.++|.+++|.||..|||||+||+|+|++... .........
T Consensus 155 ~~~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~ 234 (574)
T KOG4280|consen 155 VNPKGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRS 234 (574)
T ss_pred cCcCCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCcccccc
Confidence 87 5899999999999999999999999999999999999999999999999999999999999998433 223356778
Q ss_pred EEEEEEEcCCCcccccccCcchhhHHHHHhhHhHHHHHHHHHHhcCCCCCCCcccccccchhhhhhcccCCCCcceeEEE
Q 003511 244 GKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVA 323 (814)
Q Consensus 244 SkL~fVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~VI~aLs~~~k~~~~hIPYRdSKLTrLLkdsLGGnskT~mIa 323 (814)
|+|+|||||||||..++++.|++++|+.+||+||++||+||++|+++.+ +||||||||||+||||||||||+|+|||
T Consensus 235 ~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~---~HIPYRdSkLT~LLqdSLGGN~kT~mia 311 (574)
T KOG4280|consen 235 SKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSK---THIPYRDSKLTRLLQDSLGGNSKTTMIA 311 (574)
T ss_pred ceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhcccc---CCCCcchhHHHHHHHHHcCCCceEEEEE
Confidence 9999999999999999999999999999999999999999999999765 3999999999999999999999999999
Q ss_pred eeCCCCCChHHHHHHHHHHHHHhhcccccccccccccccchHHHHHHHHHHHHHHHHHHHHhccCCC
Q 003511 324 TISPVDSQYHHTLNTLKYADRAKKIKTHIQKNIGSIDTHVSDYQRMIDNLQIEVCRLKKELADKDSQ 390 (814)
Q Consensus 324 tISPs~~~~eETlsTLrfA~Rak~Ikn~~~~N~~~~~~~~~~~~~~I~~L~~Ei~~Lk~eL~~~~~~ 390 (814)
||+|+..+++||++||+||+|||.|+|+|.+|..+. ...+..|+.||++||.+|...+..
T Consensus 312 nvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~-------~~~~~~lq~ei~~Lk~~l~~~~~~ 371 (574)
T KOG4280|consen 312 NVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPK-------DALLRELQEEIERLKKELDPGGSP 371 (574)
T ss_pred ecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcc-------hhhHHHHHHHHHHHHHhhccccCc
Confidence 999999999999999999999999999999998664 357788899999999998876543
No 4
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=4.5e-84 Score=716.59 Aligned_cols=356 Identities=38% Similarity=0.550 Sum_probs=315.6
Q ss_pred CCCceEEEEEeCCCCCCcC---CCCeEEEeC-CcEEEEECCCCCchhhhhccccCCcceeeeeeecCCCCCcHHHHHHHH
Q 003511 11 KSTTLTVAIKCRPLTEREQ---GRDIVRVKH-DKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGPGCTNLDVYTACI 86 (814)
Q Consensus 11 ~~~~IkV~VRvRPl~~~E~---~~~~v~v~~-~~~Vvv~dp~~~~~~~~~~~~~~~~k~F~FD~VF~~~atQeeVy~~~v 86 (814)
..++|+|+||+||++..|. +..+....+ ..+|++... .+.++|.||+||.|+++|++||+.++
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~-------------~~~~~y~FDrVF~pnatQe~Vy~~~a 71 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETT-------------KETKTYVFDRVFSPNATQEDVYEFAA 71 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecc-------------cccccceeeeecCCCccHHHHHHHHH
Confidence 4589999999999999884 222333333 445554431 23489999999999999999999999
Q ss_pred hhhHhhhccCcceEEEeeccCCCCcceeeccCCC---CCCchhhhHHHHHHHHhhcCCCCeEEEEEEEEEEecceeeecc
Q 003511 87 SSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKS---DPGLMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLL 163 (814)
Q Consensus 87 ~plV~~vl~GyN~tIfAYGqTGSGKTyTM~G~~~---~~GIIpral~~LF~~i~~~~~~~~f~VsvSylEIYnE~I~DLL 163 (814)
.|+|++||.|||+||||||||||||||||.|... ..|||||++++||..|.......+|.|+|||||||+|+|+|||
T Consensus 72 ~~Iv~dVL~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL 151 (607)
T KOG0240|consen 72 KPIVDDVLLGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLL 151 (607)
T ss_pred HHHHHHHhcccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHh
Confidence 9999999999999999999999999999999876 4499999999999999998888899999999999999999999
Q ss_pred ccccCcceeeecCCCCeeecCeEEEEecChHHHHHHHHhhhhcCCCccccCCCCCCCCeEEEEEEEEEEeccccCCceeE
Q 003511 164 EKSSAHLELREDPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYCNQVMR 243 (814)
Q Consensus 164 ~~~~~~L~ired~~~g~~V~gLtev~V~S~ee~~~lL~~G~~~R~~~~T~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~ 243 (814)
++.+.++.+.+|...+++|+|+++..|.++++++++++.|..+|+++.|.||.+|||||+||+|+|++.+... .....
T Consensus 152 ~~~k~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~--~~~~~ 229 (607)
T KOG0240|consen 152 DPEKTNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVED--KRKLS 229 (607)
T ss_pred CcccCCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccc--hhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987665 67889
Q ss_pred EEEEEEEcCCCcccccccCcchhhHHHHHhhHhHHHHHHHHHHhcCCCCCCCcccccccchhhhhhcccCCCCcceeEEE
Q 003511 244 GKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVA 323 (814)
Q Consensus 244 SkL~fVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~VI~aLs~~~k~~~~hIPYRdSKLTrLLkdsLGGnskT~mIa 323 (814)
|+|.||||||||+++++|+.|.-+.|+++||+||.|||+||+||+++. .+|||||||||||||+|+|||||||++|+
T Consensus 230 gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~---~shipYRDSKLTRILqdSLGGNsRTtlIi 306 (607)
T KOG0240|consen 230 GKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGP---KSHIPYRDSKLTRILQDSLGGNSRTTLII 306 (607)
T ss_pred ccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCC---CCCCcchhhHHHHHHHHHhCCCcceEEEE
Confidence 999999999999999999999999999999999999999999999875 36999999999999999999999999999
Q ss_pred eeCCCCCChHHHHHHHHHHHHHhhcccccccccc-cccccchHHHHHHHHHHHHHHHHHHHH
Q 003511 324 TISPVDSQYHHTLNTLKYADRAKKIKTHIQKNIG-SIDTHVSDYQRMIDNLQIEVCRLKKEL 384 (814)
Q Consensus 324 tISPs~~~~eETlsTLrfA~Rak~Ikn~~~~N~~-~~~~~~~~~~~~I~~L~~Ei~~Lk~eL 384 (814)
|++|+..+..||.+||+|++|||.|+|.+.+|.. ..+.+..+|...-..+-.+++.++...
T Consensus 307 ~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~~~e~~~r~~e~~kd~~~~~~~~~~~~~ 368 (607)
T KOG0240|consen 307 CCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLELTAEEWKRKLEKKKDKNVALKEELEKLR 368 (607)
T ss_pred ecCCccccccccccchhhccccccccchhhhhhHhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999964 333444444444444444444444433
No 5
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.8e-84 Score=756.72 Aligned_cols=361 Identities=46% Similarity=0.696 Sum_probs=316.3
Q ss_pred CCCceEEEEEeCCCCCCcCC--CC-eEEEeCCcEEEEECCCCCchhhhhccccCCcceeeeeeecCCCCCcHHHHHHHHh
Q 003511 11 KSTTLTVAIKCRPLTEREQG--RD-IVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGPGCTNLDVYTACIS 87 (814)
Q Consensus 11 ~~~~IkV~VRvRPl~~~E~~--~~-~v~v~~~~~Vvv~dp~~~~~~~~~~~~~~~~k~F~FD~VF~~~atQeeVy~~~v~ 87 (814)
...+|.|+|||||++++|.. .. ...+.++..++..-... ......+..|.||+||+++++|++||+..++
T Consensus 4 ~~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-------~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tk 76 (675)
T KOG0242|consen 4 TEEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKS-------LPEKSKPEKYEFDRVFGEESTQEDVYERTTK 76 (675)
T ss_pred ccceeEEEEEeCCCCccccccCCccceEecCCceeEeecccc-------ccccccccceeeeeecCCCCCHHHHHHhccH
Confidence 45689999999999998532 11 22333443333221110 1111226899999999999999999999999
Q ss_pred hhHhhhccCcceEEEeeccCCCCcceeeccCCCCCCchhhhHHHHHHHHhhcCCCCeEEEEEEEEEEecceeeecccccc
Q 003511 88 SVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKSS 167 (814)
Q Consensus 88 plV~~vl~GyN~tIfAYGqTGSGKTyTM~G~~~~~GIIpral~~LF~~i~~~~~~~~f~VsvSylEIYnE~I~DLL~~~~ 167 (814)
|+|++|++|||+||||||||||||||||.|..++|||||+++.+||+.|.+.. ...|.|.|||+|||||.|+|||++..
T Consensus 77 piv~~~l~G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~-~r~f~v~vSYlEIYNE~I~DLL~~~~ 155 (675)
T KOG0242|consen 77 PLLLSVLEGFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSG-EREFSVRVSYLEIYNERIRDLLNPDG 155 (675)
T ss_pred HHHHHHhcCcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcC-CceeEEEEEEEEEeccccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999877 78999999999999999999999999
Q ss_pred CcceeeecCCCCeeecCeEEEEecChHHHHHHHHhhhhcCCCccccCCCCCCCCeEEEEEEEEEEeccccCCceeEEEEE
Q 003511 168 AHLELREDPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYCNQVMRGKLS 247 (814)
Q Consensus 168 ~~L~ired~~~g~~V~gLtev~V~S~ee~~~lL~~G~~~R~~~~T~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~SkL~ 247 (814)
..|.|+||+.+|++|.||++..|.|.++++.+|..|+++|+++.|.+|..|||||+||+|.|.++..... . +.++|+
T Consensus 156 ~~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~--~-~~s~L~ 232 (675)
T KOG0242|consen 156 GDLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS--S-RVSKLN 232 (675)
T ss_pred CCceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc--c-hhheeh
Confidence 9999999999999999999999999999999999999999999999999999999999999998876543 2 679999
Q ss_pred EEEcCCCcccccccCcchhhHHHHHhhHhHHHHHHHHHHhcCCCCCCCcccccccchhhhhhcccCCCCcceeEEEeeCC
Q 003511 248 LVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISP 327 (814)
Q Consensus 248 fVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~VI~aLs~~~k~~~~hIPYRdSKLTrLLkdsLGGnskT~mIatISP 327 (814)
|||||||||+.+|++.|.|++||++||+||++||+||++|+++... .||||||||||||||++|||||+|+|||||+|
T Consensus 233 lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~--~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp 310 (675)
T KOG0242|consen 233 LIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRP--RHIPYRDSKLTRLLQDSLGGNARTAIIATISP 310 (675)
T ss_pred hhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHcccccc--CCCCccccHHHHhchhhcCCCccEEEEEEeCc
Confidence 9999999999999999999999999999999999999999987543 49999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHhhcccccccccccccccchHHH-HHHHHHHHHHHHHHHHH
Q 003511 328 VDSQYHHTLNTLKYADRAKKIKTHIQKNIGSIDTHVSDYQ-RMIDNLQIEVCRLKKEL 384 (814)
Q Consensus 328 s~~~~eETlsTLrfA~Rak~Ikn~~~~N~~~~~~~~~~~~-~~I~~L~~Ei~~Lk~eL 384 (814)
+..+|+||.+||+||+|||+|++++.+|+...+.+...+. +.|..|+.++.+++..+
T Consensus 311 ~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~ 368 (675)
T KOG0242|consen 311 SSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERLKKKL 368 (675)
T ss_pred hhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999877665544433 55555666655555443
No 6
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=1.3e-82 Score=752.72 Aligned_cols=355 Identities=35% Similarity=0.541 Sum_probs=316.2
Q ss_pred CCceEEEEEeCCCCCCcCCCCeEEEeCCcEEEEECCCCCchhhhhccccCCcceeeeeeecCCCCCcHHHHHHHHhhhHh
Q 003511 12 STTLTVAIKCRPLTEREQGRDIVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGPGCTNLDVYTACISSVIS 91 (814)
Q Consensus 12 ~~~IkV~VRvRPl~~~E~~~~~v~v~~~~~Vvv~dp~~~~~~~~~~~~~~~~k~F~FD~VF~~~atQeeVy~~~v~plV~ 91 (814)
.++|+|+|||||+++.|.+..+|...++..+.+. .+.|.||+||+++++|++||+.++.|+|+
T Consensus 97 ds~VkV~VRVRPl~~~E~g~~iV~~~s~dsl~I~-----------------~qtFtFD~VFdp~aTQedVFe~vv~PLV~ 159 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGEEGEMIVQKMSNDSLTIN-----------------GQTFTFDSIADPESTQEDIFQLVGAPLVE 159 (1320)
T ss_pred CCCeEEEEEcCCCCCccCCCeeEEEcCCCeEEEe-----------------CcEEeCCeeeCCCCCHHHHHHHHHHHHHH
Confidence 5799999999999999876666555555544431 36899999999999999999999999999
Q ss_pred hhccCcceEEEeeccCCCCcceeeccCC----------CCCCchhhhHHHHHHHHhhcC-----CCCeEEEEEEEEEEec
Q 003511 92 GVVQGLNATVFAYGSTGSGKTYTMVGTK----------SDPGLMVLSLHTIFDLIKKDK-----NSDEFEVSCSYLEVYN 156 (814)
Q Consensus 92 ~vl~GyN~tIfAYGqTGSGKTyTM~G~~----------~~~GIIpral~~LF~~i~~~~-----~~~~f~VsvSylEIYn 156 (814)
++++|||+||||||||||||||||+|+. .++|||||++++||..|.... ....|.|+|||+||||
T Consensus 160 svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYN 239 (1320)
T PLN03188 160 NCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYN 239 (1320)
T ss_pred HHhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeec
Confidence 9999999999999999999999999964 468999999999999986532 2357999999999999
Q ss_pred ceeeeccccccCcceeeecCCCCeeecCeEEEEecChHHHHHHHHhhhhcCCCccccCCCCCCCCeEEEEEEEEEEeccc
Q 003511 157 EVIYDLLEKSSAHLELREDPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTE 236 (814)
Q Consensus 157 E~I~DLL~~~~~~L~ired~~~g~~V~gLtev~V~S~ee~~~lL~~G~~~R~~~~T~~N~~SSRSHaIftI~V~~~~~~~ 236 (814)
|+|+|||++....+.|++++.+|++|.||+++.|.|++|++++|..|..+|++++|.+|..|||||+||+|+|.+.....
T Consensus 240 EkI~DLLsp~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~ 319 (1320)
T PLN03188 240 EQITDLLDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSV 319 (1320)
T ss_pred CcceeccccccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeeccc
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999998765432
Q ss_pred --cCCceeEEEEEEEEcCCCcccccccCcchhhHHHHHhhHhHHHHHHHHHHhcCCCC-CCCcccccccchhhhhhcccC
Q 003511 237 --YCNQVMRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQK-KGLAYVPYRNSKLTRILKDGL 313 (814)
Q Consensus 237 --~~~~~~~SkL~fVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~VI~aLs~~~k-~~~~hIPYRdSKLTrLLkdsL 313 (814)
.......|+|+|||||||||...+++.|.+++|+++||+||++||+||++|++... ++..||||||||||+||||+|
T Consensus 320 ~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSL 399 (1320)
T PLN03188 320 ADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESL 399 (1320)
T ss_pred CCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhc
Confidence 12345689999999999999999999999999999999999999999999986432 234699999999999999999
Q ss_pred CCCcceeEEEeeCCCCCChHHHHHHHHHHHHHhhcccccccccccccccchHHHHHHHHHHHHHHHHHHHH
Q 003511 314 SGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKIKTHIQKNIGSIDTHVSDYQRMIDNLQIEVCRLKKEL 384 (814)
Q Consensus 314 GGnskT~mIatISPs~~~~eETlsTLrfA~Rak~Ikn~~~~N~~~~~~~~~~~~~~I~~L~~Ei~~Lk~eL 384 (814)
||||+|+|||||||+..+++||++||+||+|||+|+|+|++|... ...+..++++|++|+.|+.+||...
T Consensus 400 GGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~-~~~vn~LrelIr~Lk~EL~rLK~~~ 469 (1320)
T PLN03188 400 GGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVM-QDDVNFLREVIRQLRDELQRVKANG 469 (1320)
T ss_pred CCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccch-hhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999643 2234457778999999999998774
No 7
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=3.5e-81 Score=685.42 Aligned_cols=333 Identities=57% Similarity=0.847 Sum_probs=302.2
Q ss_pred ceEEEEEeCCCCCCcC---CCCeEEEeCCcEEEEECCCCCchh-hhhccccCCcceeeeeeecCCCCCcHHHHHHHHhhh
Q 003511 14 TLTVAIKCRPLTEREQ---GRDIVRVKHDKEVVVLDPDFSKDY-LDHIQNRTKEKNYCFDRAFGPGCTNLDVYTACISSV 89 (814)
Q Consensus 14 ~IkV~VRvRPl~~~E~---~~~~v~v~~~~~Vvv~dp~~~~~~-~~~~~~~~~~k~F~FD~VF~~~atQeeVy~~~v~pl 89 (814)
+|+|+|||||+.+.|. ...+|.+.++. +++++|...... .....+...++.|.||+||+++++|++||+.++.|+
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~pl 79 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDR-MLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPL 79 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCC-EEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHH
Confidence 5899999999999874 34577777664 556666543211 112233456789999999999999999999999999
Q ss_pred HhhhccCcceEEEeeccCCCCcceeeccCCCCCCchhhhHHHHHHHHhhcCCCCeEEEEEEEEEEecceeeeccccccCc
Q 003511 90 ISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKSSAH 169 (814)
Q Consensus 90 V~~vl~GyN~tIfAYGqTGSGKTyTM~G~~~~~GIIpral~~LF~~i~~~~~~~~f~VsvSylEIYnE~I~DLL~~~~~~ 169 (814)
|+++++|||+||||||||||||||||+|+..++|||||++++||+.+........|.|+|||+|||||+|+|||++....
T Consensus 80 v~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~ 159 (338)
T cd01370 80 VDGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSGP 159 (338)
T ss_pred HHHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCCCC
Confidence 99999999999999999999999999999999999999999999999987767899999999999999999999988889
Q ss_pred ceeeecCCCCeeecCeEEEEecChHHHHHHHHhhhhcCCCccccCCCCCCCCeEEEEEEEEEEeccc-cCCceeEEEEEE
Q 003511 170 LELREDPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTE-YCNQVMRGKLSL 248 (814)
Q Consensus 170 L~ired~~~g~~V~gLtev~V~S~ee~~~lL~~G~~~R~~~~T~~N~~SSRSHaIftI~V~~~~~~~-~~~~~~~SkL~f 248 (814)
+.+++++.++++|.|++++.|.|++|++++|+.|.++|++++|.+|..|||||+||+|+|.+..... .......|+|+|
T Consensus 160 l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~ 239 (338)
T cd01370 160 LELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLSL 239 (338)
T ss_pred ceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999887652 134577899999
Q ss_pred EEcCCCcccccccCcchhhHHHHHhhHhHHHHHHHHHHhcCCCCCCCcccccccchhhhhhcccCCCCcceeEEEeeCCC
Q 003511 249 VDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPV 328 (814)
Q Consensus 249 VDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~VI~aLs~~~k~~~~hIPYRdSKLTrLLkdsLGGnskT~mIatISPs 328 (814)
||||||||..+++..|.+++|++.||+||.+|++||.+|+...+ +..||||||||||+||+|+|||||+|+||+||||+
T Consensus 240 VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~-~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~ 318 (338)
T cd01370 240 IDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKK-KNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPS 318 (338)
T ss_pred EECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccC-CCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCc
Confidence 99999999999999999999999999999999999999998654 34799999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHhhc
Q 003511 329 DSQYHHTLNTLKYADRAKKI 348 (814)
Q Consensus 329 ~~~~eETlsTLrfA~Rak~I 348 (814)
..+++||++||+||+|||+|
T Consensus 319 ~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 319 SSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred hhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999987
No 8
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=1.5e-80 Score=680.25 Aligned_cols=321 Identities=36% Similarity=0.569 Sum_probs=290.3
Q ss_pred ceEEEEEeCCCCCCcC---CCCeEEEeCCcEEEEECCCCCchhhhhccccCCcceeeeeeecCCCCCcHHHHHHHHhhhH
Q 003511 14 TLTVAIKCRPLTEREQ---GRDIVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGPGCTNLDVYTACISSVI 90 (814)
Q Consensus 14 ~IkV~VRvRPl~~~E~---~~~~v~v~~~~~Vvv~dp~~~~~~~~~~~~~~~~k~F~FD~VF~~~atQeeVy~~~v~plV 90 (814)
+|+|+|||||+.+.|. ...+|.+.+++.+++... ..+.|.||+||+++++|++||+.++.|+|
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~--------------~~~~f~FD~vf~~~~~q~~vy~~~~~p~v 67 (337)
T cd01373 2 AVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSH--------------PPRMFTFDHVADSNTNQEDVFQSVGKPLV 67 (337)
T ss_pred CeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCC--------------CCcEEeCCeEeCCCCCHHHHHHHHHHHHH
Confidence 6999999999999885 233555554444444321 15789999999999999999999999999
Q ss_pred hhhccCcceEEEeeccCCCCcceeeccCCC--------CCCchhhhHHHHHHHHhhcC----CCCeEEEEEEEEEEecce
Q 003511 91 SGVVQGLNATVFAYGSTGSGKTYTMVGTKS--------DPGLMVLSLHTIFDLIKKDK----NSDEFEVSCSYLEVYNEV 158 (814)
Q Consensus 91 ~~vl~GyN~tIfAYGqTGSGKTyTM~G~~~--------~~GIIpral~~LF~~i~~~~----~~~~f~VsvSylEIYnE~ 158 (814)
+++++|||+||||||||||||||||+|+.. ++|||||++++||..+.... ....|.|+|||+|||||+
T Consensus 68 ~~~~~G~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~ 147 (337)
T cd01373 68 EDCLSGYNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQ 147 (337)
T ss_pred HHHhCCCceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCE
Confidence 999999999999999999999999999763 57999999999999987542 345799999999999999
Q ss_pred eeeccccccCcceeeecCCCCeeecCeEEEEecChHHHHHHHHhhhhcCCCccccCCCCCCCCeEEEEEEEEEEeccccC
Q 003511 159 IYDLLEKSSAHLELREDPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYC 238 (814)
Q Consensus 159 I~DLL~~~~~~L~ired~~~g~~V~gLtev~V~S~ee~~~lL~~G~~~R~~~~T~~N~~SSRSHaIftI~V~~~~~~~~~ 238 (814)
|+|||++....+.+++++.++++|.|++++.|.|++|++++|..|.++|++++|.+|..|||||+||+|+|.+.......
T Consensus 148 v~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~ 227 (337)
T cd01373 148 ITDLLDPTSRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASS 227 (337)
T ss_pred eeeCCCCCCCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCC
Confidence 99999998889999999999999999999999999999999999999999999999999999999999999987655433
Q ss_pred CceeEEEEEEEEcCCCcccccccCcchhhHHHHHhhHhHHHHHHHHHHhcCCCCCCCcccccccchhhhhhcccCCCCcc
Q 003511 239 NQVMRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTRILKDGLSGNSQ 318 (814)
Q Consensus 239 ~~~~~SkL~fVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~VI~aLs~~~k~~~~hIPYRdSKLTrLLkdsLGGnsk 318 (814)
.....|+|+|||||||||...+++.|.+++|+..||+||++|++||.+|++....+..||||||||||+||+|+|||||+
T Consensus 228 ~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~ 307 (337)
T cd01373 228 TNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAK 307 (337)
T ss_pred CcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCce
Confidence 45678999999999999999999999999999999999999999999998754444679999999999999999999999
Q ss_pred eeEEEeeCCCCCChHHHHHHHHHHHHHhhc
Q 003511 319 TVMVATISPVDSQYHHTLNTLKYADRAKKI 348 (814)
Q Consensus 319 T~mIatISPs~~~~eETlsTLrfA~Rak~I 348 (814)
|+|||||||+..+++||++||+||+|||+|
T Consensus 308 t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 308 TTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999987
No 9
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.1e-80 Score=702.73 Aligned_cols=365 Identities=39% Similarity=0.616 Sum_probs=323.0
Q ss_pred CCceEEEEEeCCCCCCcC--CCC-eEEEeCCcEEEEECCCCCchhhhhccccCCcceeeeeeecCCC-------CCcHHH
Q 003511 12 STTLTVAIKCRPLTEREQ--GRD-IVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGPG-------CTNLDV 81 (814)
Q Consensus 12 ~~~IkV~VRvRPl~~~E~--~~~-~v~v~~~~~Vvv~dp~~~~~~~~~~~~~~~~k~F~FD~VF~~~-------atQeeV 81 (814)
+.+|+|+|||||++.+|. ... +|.|... ++++..|.... .+.....+++|+||++|++. +.|+.|
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~-q~vl~~~pp~~----~~~~~k~pktFAFDhcF~s~dpes~n~agQE~V 77 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKN-QTVLHPPPPNH----KIGESKGPKTFAFDHCFWSMDPESKNYAGQETV 77 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccC-ceeecCCCccc----cccccCCCceeecccccccCCccccccccchhH
Confidence 478999999999999995 333 4555444 44554443221 12233568999999999875 479999
Q ss_pred HHHHHhhhHhhhccCcceEEEeeccCCCCcceeeccCCCCCCchhhhHHHHHHHHhhcCC-CCeEEEEEEEEEEecceee
Q 003511 82 YTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTIFDLIKKDKN-SDEFEVSCSYLEVYNEVIY 160 (814)
Q Consensus 82 y~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM~G~~~~~GIIpral~~LF~~i~~~~~-~~~f~VsvSylEIYnE~I~ 160 (814)
|+.++..+|+++|+|||+||||||||||||||||+|..+.||||||++..||..|.+.+. ...|.|.|||+|||||++|
T Consensus 78 f~~lG~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~ 157 (1714)
T KOG0241|consen 78 FKCLGEGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVR 157 (1714)
T ss_pred HHhcchHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchh
Confidence 999999999999999999999999999999999999999999999999999999987653 4579999999999999999
Q ss_pred eccccc--cCcceeeecCCCCeeecCeEEEEecChHHHHHHHHhhhhcCCCccccCCCCCCCCeEEEEEEEEEEeccccC
Q 003511 161 DLLEKS--SAHLELREDPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYC 238 (814)
Q Consensus 161 DLL~~~--~~~L~ired~~~g~~V~gLtev~V~S~ee~~~lL~~G~~~R~~~~T~~N~~SSRSHaIftI~V~~~~~~~~~ 238 (814)
|||+|. +..++++++...|++|.||++..|.|++|+-.+|..|+++|++++|+||..|||||+||.|.|.++-.+...
T Consensus 158 DLLdPk~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~kt 237 (1714)
T KOG0241|consen 158 DLLDPKGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKT 237 (1714)
T ss_pred hhhCCCCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEecccc
Confidence 999975 467999999999999999999999999999999999999999999999999999999999999987655432
Q ss_pred --CceeEEEEEEEEcCCCcccccccCcchhhHHHHHhhHhHHHHHHHHHHhcCCCC--CCCcccccccchhhhhhcccCC
Q 003511 239 --NQVMRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQK--KGLAYVPYRNSKLTRILKDGLS 314 (814)
Q Consensus 239 --~~~~~SkL~fVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~VI~aLs~~~k--~~~~hIPYRdSKLTrLLkdsLG 314 (814)
...+.|+|.|||||||||+.++++.|.|++||.+||+||++||.||.||++... .+..+||||||.||+||||+||
T Consensus 238 g~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LG 317 (1714)
T KOG0241|consen 238 GHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLG 317 (1714)
T ss_pred CcchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcC
Confidence 234689999999999999999999999999999999999999999999987543 2357999999999999999999
Q ss_pred CCcceeEEEeeCCCCCChHHHHHHHHHHHHHhhcccccccccccccccchHHHHHHHHHHHHHHHHHHHHhccC
Q 003511 315 GNSQTVMVATISPVDSQYHHTLNTLKYADRAKKIKTHIQKNIGSIDTHVSDYQRMIDNLQIEVCRLKKELADKD 388 (814)
Q Consensus 315 GnskT~mIatISPs~~~~eETlsTLrfA~Rak~Ikn~~~~N~~~~~~~~~~~~~~I~~L~~Ei~~Lk~eL~~~~ 388 (814)
|||+|+||+||||++++|+||++|||||+|||+|+|++.+|..+ ..+.|++|+.|++.|+.+|..++
T Consensus 318 GNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedp-------narvirElReEve~lr~qL~~ae 384 (1714)
T KOG0241|consen 318 GNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDP-------NARVIRELREEVEKLREQLEQAE 384 (1714)
T ss_pred CCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCc-------hHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999643 35689999999999999998754
No 10
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=4.4e-79 Score=670.58 Aligned_cols=327 Identities=35% Similarity=0.589 Sum_probs=295.1
Q ss_pred ceEEEEEeCCCCCCcC---CCCeEEEeCCcEEEEECCCCCchhhhhccccCCcceeeeeeecCCCCCcHHHHHHHHhhhH
Q 003511 14 TLTVAIKCRPLTEREQ---GRDIVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGPGCTNLDVYTACISSVI 90 (814)
Q Consensus 14 ~IkV~VRvRPl~~~E~---~~~~v~v~~~~~Vvv~dp~~~~~~~~~~~~~~~~k~F~FD~VF~~~atQeeVy~~~v~plV 90 (814)
+|+|+|||||+.+.|. ...+|.+.++++|++.+|...............++.|.||+||+++++|++||+.++.|+|
T Consensus 2 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v 81 (345)
T cd01368 2 PVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPLV 81 (345)
T ss_pred CEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHHH
Confidence 6999999999999884 3457888888888888775432211112234567899999999999999999999999999
Q ss_pred hhhccCcceEEEeeccCCCCcceeeccCCCCCCchhhhHHHHHHHHhhcCCCCeEEEEEEEEEEecceeeecccccc---
Q 003511 91 SGVVQGLNATVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKSS--- 167 (814)
Q Consensus 91 ~~vl~GyN~tIfAYGqTGSGKTyTM~G~~~~~GIIpral~~LF~~i~~~~~~~~f~VsvSylEIYnE~I~DLL~~~~--- 167 (814)
+++++|||+||||||||||||||||+|+..++|||||++++||+.+.. |.|+|||+|||||+|+|||++..
T Consensus 82 ~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~------~~v~~S~~EIyne~v~DLL~~~~~~~ 155 (345)
T cd01368 82 QDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG------YSVFVSYVEIYNNYIYDLLEDSPSST 155 (345)
T ss_pred HHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh------eeEEEEEEEEeCCEeEeCCCCccccc
Confidence 999999999999999999999999999999999999999999999865 99999999999999999998754
Q ss_pred ---CcceeeecCCCCeeecCeEEEEecChHHHHHHHHhhhhcCCCccccCCCCCCCCeEEEEEEEEEEeccc------cC
Q 003511 168 ---AHLELREDPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTE------YC 238 (814)
Q Consensus 168 ---~~L~ired~~~g~~V~gLtev~V~S~ee~~~lL~~G~~~R~~~~T~~N~~SSRSHaIftI~V~~~~~~~------~~ 238 (814)
..+.+++|+.++++|.|++++.|.|++|++++|..|.++|.+++|.+|..|||||+||+|+|.+..... ..
T Consensus 156 ~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~ 235 (345)
T cd01368 156 KKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDK 235 (345)
T ss_pred cCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCC
Confidence 369999999999999999999999999999999999999999999999999999999999999876542 12
Q ss_pred CceeEEEEEEEEcCCCcccccccCcchhhHHHHHhhHhHHHHHHHHHHhcCCCCC--CCcccccccchhhhhhcccCCCC
Q 003511 239 NQVMRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKK--GLAYVPYRNSKLTRILKDGLSGN 316 (814)
Q Consensus 239 ~~~~~SkL~fVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~VI~aLs~~~k~--~~~hIPYRdSKLTrLLkdsLGGn 316 (814)
.....|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|++.+.. +..||||||||||+||+|+||||
T Consensus 236 ~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~ 315 (345)
T cd01368 236 DQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGE 315 (345)
T ss_pred CceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCC
Confidence 4567899999999999999999999999999999999999999999999875432 35799999999999999999999
Q ss_pred cceeEEEeeCCCCCChHHHHHHHHHHHHHh
Q 003511 317 SQTVMVATISPVDSQYHHTLNTLKYADRAK 346 (814)
Q Consensus 317 skT~mIatISPs~~~~eETlsTLrfA~Rak 346 (814)
|+|+||+||||+..+++||++||+||.+|+
T Consensus 316 s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 316 GKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999985
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=2.9e-77 Score=658.56 Aligned_cols=336 Identities=40% Similarity=0.636 Sum_probs=303.4
Q ss_pred CceEEEEEeCCCCCCcCC---CCeEEEeCCcEEEEECCCCCchhhhhccccCCcceeeeeeecCCC-------CCcHHHH
Q 003511 13 TTLTVAIKCRPLTEREQG---RDIVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGPG-------CTNLDVY 82 (814)
Q Consensus 13 ~~IkV~VRvRPl~~~E~~---~~~v~v~~~~~Vvv~dp~~~~~~~~~~~~~~~~k~F~FD~VF~~~-------atQeeVy 82 (814)
.+|+|+|||||++..|.. ..++.+.+ ..|.+.+|.... ......+.|.||+||++. ++|++||
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~-~~v~v~~~~~~~------~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf 73 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPG-KVTTLKNPKAAD------ATRKKPKSFSFDHSYWSHDSEDPHYASQEDVF 73 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECC-CEEEEEcCCccc------ccccCceEEECCeEecccCCCCCCCCCHHHHH
Confidence 479999999999998853 23455544 778888875311 112346899999999999 9999999
Q ss_pred HHHHhhhHhhhccCcceEEEeeccCCCCcceeeccCCCCCCchhhhHHHHHHHHhhcCC-CCeEEEEEEEEEEecceeee
Q 003511 83 TACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTIFDLIKKDKN-SDEFEVSCSYLEVYNEVIYD 161 (814)
Q Consensus 83 ~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM~G~~~~~GIIpral~~LF~~i~~~~~-~~~f~VsvSylEIYnE~I~D 161 (814)
+.++.|+|+++++|||+||||||||||||||||+|+..++|||||++++||+.+..... ...|.|+|||+|||||+|+|
T Consensus 74 ~~~~~p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~D 153 (356)
T cd01365 74 EDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRD 153 (356)
T ss_pred HHHHHHHHHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeee
Confidence 99999999999999999999999999999999999999999999999999999987654 56899999999999999999
Q ss_pred cccccc---CcceeeecCCCCeeecCeEEEEecChHHHHHHHHhhhhcCCCccccCCCCCCCCeEEEEEEEEEEeccc--
Q 003511 162 LLEKSS---AHLELREDPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTE-- 236 (814)
Q Consensus 162 LL~~~~---~~L~ired~~~g~~V~gLtev~V~S~ee~~~lL~~G~~~R~~~~T~~N~~SSRSHaIftI~V~~~~~~~-- 236 (814)
||++.. ..+.+++++.++++|.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+.....
T Consensus 154 LL~~~~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~ 233 (356)
T cd01365 154 LLNPKKKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKET 233 (356)
T ss_pred CCCCCccCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCC
Confidence 999774 689999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred cCCceeEEEEEEEEcCCCcccccccCcchhhHHHHHhhHhHHHHHHHHHHhcCCCC----CCCcccccccchhhhhhccc
Q 003511 237 YCNQVMRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQK----KGLAYVPYRNSKLTRILKDG 312 (814)
Q Consensus 237 ~~~~~~~SkL~fVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~VI~aLs~~~k----~~~~hIPYRdSKLTrLLkds 312 (814)
.......|+|+|||||||||..+++..|.+++|+..||+||++|++||.+|+.... ++..||||||||||+||+|+
T Consensus 234 ~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~ 313 (356)
T cd01365 234 DLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKEN 313 (356)
T ss_pred CCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHh
Confidence 23456789999999999999999999999999999999999999999999987542 23579999999999999999
Q ss_pred CCCCcceeEEEeeCCCCCChHHHHHHHHHHHHHhhcccccccc
Q 003511 313 LSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKIKTHIQKN 355 (814)
Q Consensus 313 LGGnskT~mIatISPs~~~~eETlsTLrfA~Rak~Ikn~~~~N 355 (814)
||||++|+||+||||+..+++||++||+||+||++|++.|++|
T Consensus 314 lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 314 LGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred cCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 9999999999999999999999999999999999999999875
No 12
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=4.7e-76 Score=641.00 Aligned_cols=317 Identities=44% Similarity=0.700 Sum_probs=288.3
Q ss_pred ceEEEEEeCCCCCCcC---CCCeEEEeCCcEEEEECCCCCchhhhhccccCCcceeeeeeecCCCCCcHHHHHHHHhhhH
Q 003511 14 TLTVAIKCRPLTEREQ---GRDIVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGPGCTNLDVYTACISSVI 90 (814)
Q Consensus 14 ~IkV~VRvRPl~~~E~---~~~~v~v~~~~~Vvv~dp~~~~~~~~~~~~~~~~k~F~FD~VF~~~atQeeVy~~~v~plV 90 (814)
+|+|+|||||+.+.|. ...++.+.+++++.+.+|....+. ......+.|.||+||+++++|++||+.++.|+|
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv 77 (322)
T cd01367 2 KITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDL----TKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLI 77 (322)
T ss_pred CeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCcccccc----ccccCCceEecceEECCCCCHHHHHHHHHHHHH
Confidence 6999999999999885 235667766667888776543221 111236899999999999999999999999999
Q ss_pred hhhccCcceEEEeeccCCCCcceeeccCCCCCCchhhhHHHHHHHHhhcCCCCeEEEEEEEEEEecceeeeccccccCcc
Q 003511 91 SGVVQGLNATVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKSSAHL 170 (814)
Q Consensus 91 ~~vl~GyN~tIfAYGqTGSGKTyTM~G~~~~~GIIpral~~LF~~i~~~~~~~~f~VsvSylEIYnE~I~DLL~~~~~~L 170 (814)
+.+++|||+||||||||||||||||+|+..++|||||++++||+.+.... ..|.|+|||+|||||+|+|||++ ...+
T Consensus 78 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~-~~~l 154 (322)
T cd01367 78 PHVFEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN--DDLGVTVSFFEIYGGKLFDLLND-RKRL 154 (322)
T ss_pred HHHhCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc--cccEEEEEEEeeecCchhhhccC-ccce
Confidence 99999999999999999999999999999999999999999999997654 67999999999999999999987 5679
Q ss_pred eeeecCCCCeeecCeEEEEecChHHHHHHHHhhhhcCCCccccCCCCCCCCeEEEEEEEEEEeccccCCceeEEEEEEEE
Q 003511 171 ELREDPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYCNQVMRGKLSLVD 250 (814)
Q Consensus 171 ~ired~~~g~~V~gLtev~V~S~ee~~~lL~~G~~~R~~~~T~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~SkL~fVD 250 (814)
.+++++.++++|.|++++.|.|++|++++|..|.++|.+++|.+|..|||||+||+|+|.+... ....|+|+|||
T Consensus 155 ~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~-----~~~~s~l~~vD 229 (322)
T cd01367 155 SVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL-----NKLLGKLSFID 229 (322)
T ss_pred eEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC-----CeeEEEEEEee
Confidence 9999999999999999999999999999999999999999999999999999999999997654 45689999999
Q ss_pred cCCCccccccc-CcchhhHHHHHhhHhHHHHHHHHHHhcCCCCCCCcccccccchhhhhhcccCCCCcceeEEEeeCCCC
Q 003511 251 LAGSERASEAN-SGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVD 329 (814)
Q Consensus 251 LAGSER~~~t~-~~g~rlkE~~~INkSL~aLg~VI~aLs~~~k~~~~hIPYRdSKLTrLLkdsLGGnskT~mIatISPs~ 329 (814)
||||||...++ ..+++++|+..||+||++|++||.+|+..+ .||||||||||+||+|+|||||+|+||+||||+.
T Consensus 230 LAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~----~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~ 305 (322)
T cd01367 230 LAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNK----AHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSA 305 (322)
T ss_pred cCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCC----CcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCch
Confidence 99999998765 568999999999999999999999998754 5899999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHh
Q 003511 330 SQYHHTLNTLKYADRAK 346 (814)
Q Consensus 330 ~~~eETlsTLrfA~Rak 346 (814)
.+++||++||+||+|+|
T Consensus 306 ~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 306 SSCEHTLNTLRYADRVK 322 (322)
T ss_pred hhHHHHHHHHHHHHhhC
Confidence 99999999999999986
No 13
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=2e-75 Score=642.86 Aligned_cols=329 Identities=40% Similarity=0.682 Sum_probs=296.7
Q ss_pred CceEEEEEeCCCCCCcCC---CCeEEEeCC-cEEEEECCCCCchhhhhccccCCcceeeeeeecCCCCCcHHHHHHHHhh
Q 003511 13 TTLTVAIKCRPLTEREQG---RDIVRVKHD-KEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGPGCTNLDVYTACISS 88 (814)
Q Consensus 13 ~~IkV~VRvRPl~~~E~~---~~~v~v~~~-~~Vvv~dp~~~~~~~~~~~~~~~~k~F~FD~VF~~~atQeeVy~~~v~p 88 (814)
.+|+|+|||||+...|.. ..++.+.++ ++|.+.++.. +....+.|.||+||+++++|++||+.++.|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~---------~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~p 72 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGA---------DKQSTKTYTFDKVFGPEADQIEVYSQVVSP 72 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCc---------ccccceeEeccccCCCCCCHHHHHHHHHHH
Confidence 589999999999998853 356677665 4454444321 233567999999999999999999999999
Q ss_pred hHhhhccCcceEEEeeccCCCCcceeeccCCC-----------CCCchhhhHHHHHHHHhhcCCCCeEEEEEEEEEEecc
Q 003511 89 VISGVVQGLNATVFAYGSTGSGKTYTMVGTKS-----------DPGLMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYNE 157 (814)
Q Consensus 89 lV~~vl~GyN~tIfAYGqTGSGKTyTM~G~~~-----------~~GIIpral~~LF~~i~~~~~~~~f~VsvSylEIYnE 157 (814)
+|+++++|||+||||||||||||||||+|+.. ++|||||++++||+.+... ...|.|+|||+|||||
T Consensus 73 lv~~~~~G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e 150 (352)
T cd01364 73 ILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ--NTEYSVKVSYLELYNE 150 (352)
T ss_pred HHHHHhCCCeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc--cceeEEEEEEEEeeCC
Confidence 99999999999999999999999999999853 4799999999999999875 5689999999999999
Q ss_pred eeeeccccc---cCcceeeec--CCCCeeecCeEEEEecChHHHHHHHHhhhhcCCCccccCCCCCCCCeEEEEEEEEEE
Q 003511 158 VIYDLLEKS---SAHLELRED--PMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRR 232 (814)
Q Consensus 158 ~I~DLL~~~---~~~L~ired--~~~g~~V~gLtev~V~S~ee~~~lL~~G~~~R~~~~T~~N~~SSRSHaIftI~V~~~ 232 (814)
+|+|||++. ...+.++++ ..++++|.|++++.|.|++|++++|..|.++|.+++|.+|..|||||+||+|+|.+.
T Consensus 151 ~v~DLL~~~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~ 230 (352)
T cd01364 151 ELFDLLSSESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIK 230 (352)
T ss_pred eeeeCCCCccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEe
Confidence 999999976 568999999 589999999999999999999999999999999999999999999999999999987
Q ss_pred ecccc-CCceeEEEEEEEEcCCCcccccccCcchhhHHHHHhhHhHHHHHHHHHHhcCCCCCCCcccccccchhhhhhcc
Q 003511 233 QKTEY-CNQVMRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTRILKD 311 (814)
Q Consensus 233 ~~~~~-~~~~~~SkL~fVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~VI~aLs~~~k~~~~hIPYRdSKLTrLLkd 311 (814)
..... ......|+|+|||||||||..+.++.+.+++|+..||+||.+|++||.+|+... .||||||||||+||+|
T Consensus 231 ~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~----~~vpyR~S~LT~lL~~ 306 (352)
T cd01364 231 ETTISGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKS----PHIPYRESKLTRLLQD 306 (352)
T ss_pred ccCCCCCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCC----CCCCCcccHHHHHHHH
Confidence 65432 234567999999999999999999999999999999999999999999998754 5899999999999999
Q ss_pred cCCCCcceeEEEeeCCCCCChHHHHHHHHHHHHHhhccccccccc
Q 003511 312 GLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKIKTHIQKNI 356 (814)
Q Consensus 312 sLGGnskT~mIatISPs~~~~eETlsTLrfA~Rak~Ikn~~~~N~ 356 (814)
+|||||+|+||+||||+..+++||++||+||+||++|+|.|.+|.
T Consensus 307 ~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 307 SLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred hcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 999999999999999999999999999999999999999999884
No 14
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=1.9e-75 Score=636.32 Aligned_cols=318 Identities=42% Similarity=0.653 Sum_probs=296.1
Q ss_pred CceEEEEEeCCCCCCcC---CCCeEEEeCCcEEEEECCCCCchhhhhccccCCcceeeeeeecCCCCCcHHHHHHHHhhh
Q 003511 13 TTLTVAIKCRPLTEREQ---GRDIVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGPGCTNLDVYTACISSV 89 (814)
Q Consensus 13 ~~IkV~VRvRPl~~~E~---~~~~v~v~~~~~Vvv~dp~~~~~~~~~~~~~~~~k~F~FD~VF~~~atQeeVy~~~v~pl 89 (814)
.+|+|+|||||+.+.|. +..+|.+.++++|.+.++ ...+.|.||+||+++++|++||+.++.|+
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~-------------~~~~~f~FD~vf~~~~~q~~vy~~~~~~~ 68 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGS-------------DDGKTFSFDRVFPPNTTQEDVYNFVAKPI 68 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCC-------------CCceEEEcCeEECCCCCHHHHHHHHHHHH
Confidence 58999999999999883 445777777767776554 23578999999999999999999999999
Q ss_pred HhhhccCcceEEEeeccCCCCcceeeccCCC---CCCchhhhHHHHHHHHhhcCCCCeEEEEEEEEEEecceeeeccccc
Q 003511 90 ISGVVQGLNATVFAYGSTGSGKTYTMVGTKS---DPGLMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKS 166 (814)
Q Consensus 90 V~~vl~GyN~tIfAYGqTGSGKTyTM~G~~~---~~GIIpral~~LF~~i~~~~~~~~f~VsvSylEIYnE~I~DLL~~~ 166 (814)
|+.+++|+|+||||||+|||||||||+|+.. ++|||||++++||+.+........|.|++||+|||||+++|||++.
T Consensus 69 v~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~ 148 (325)
T cd01369 69 VDDVLNGYNGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVS 148 (325)
T ss_pred HHHHHcCccceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCc
Confidence 9999999999999999999999999999988 8899999999999999887767789999999999999999999998
Q ss_pred cCcceeeecCCCCeeecCeEEEEecChHHHHHHHHhhhhcCCCccccCCCCCCCCeEEEEEEEEEEeccccCCceeEEEE
Q 003511 167 SAHLELREDPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYCNQVMRGKL 246 (814)
Q Consensus 167 ~~~L~ired~~~g~~V~gLtev~V~S~ee~~~lL~~G~~~R~~~~T~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~SkL 246 (814)
...+.+++++.++++|.|++++.|.|++|++.+|..|.++|++++|.+|..|||||+||+|+|.+..... .....|+|
T Consensus 149 ~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~--~~~~~s~l 226 (325)
T cd01369 149 KDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVET--GSKKRGKL 226 (325)
T ss_pred cCCceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCC--CCEEEEEE
Confidence 8899999999999999999999999999999999999999999999999999999999999999876543 45678999
Q ss_pred EEEEcCCCcccccccCcchhhHHHHHhhHhHHHHHHHHHHhcCCCCCCCcccccccchhhhhhcccCCCCcceeEEEeeC
Q 003511 247 SLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATIS 326 (814)
Q Consensus 247 ~fVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~VI~aLs~~~k~~~~hIPYRdSKLTrLLkdsLGGnskT~mIatIS 326 (814)
+|||||||||..+++..|.+++|+..||+||.+|++||.+|+.+++ .||||||||||+||+|+|||||+|+||+|||
T Consensus 227 ~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~---~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vs 303 (325)
T cd01369 227 FLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKS---THIPYRDSKLTRILQDSLGGNSRTTLIICCS 303 (325)
T ss_pred EEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCC---CcCCCccCHHHHHHHHhcCCCCeEEEEEEeC
Confidence 9999999999999999999999999999999999999999987543 5899999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHhhc
Q 003511 327 PVDSQYHHTLNTLKYADRAKKI 348 (814)
Q Consensus 327 Ps~~~~eETlsTLrfA~Rak~I 348 (814)
|+..+++||++||+||+|||+|
T Consensus 304 p~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 304 PSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred CccccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999987
No 15
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=3.3e-75 Score=636.95 Aligned_cols=324 Identities=44% Similarity=0.698 Sum_probs=294.4
Q ss_pred CceEEEEEeCCCCCCcCC---CCeEEEe-CCcEEEEECCCCCchhhhhccccCCcceeeeeeecCCCCCcHHHHHHHHhh
Q 003511 13 TTLTVAIKCRPLTEREQG---RDIVRVK-HDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGPGCTNLDVYTACISS 88 (814)
Q Consensus 13 ~~IkV~VRvRPl~~~E~~---~~~v~v~-~~~~Vvv~dp~~~~~~~~~~~~~~~~k~F~FD~VF~~~atQeeVy~~~v~p 88 (814)
++|+|+|||||+++.|.. ..++.+. ++..|.+.+|... .....+.|.||+||+++++|++||+.++.|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~~~~~f~fd~vf~~~~~q~~vy~~~~~p 72 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKAD--------AKEPPKVFTFDAVYDPNSTQEDVYNETARP 72 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCccc--------ccCCCceeeeccccCCCccHHHHHHHHHHH
Confidence 479999999999988853 2355554 4456777766431 224578999999999999999999999999
Q ss_pred hHhhhccCcceEEEeeccCCCCcceeeccCCC---CCCchhhhHHHHHHHHhhcCCCCeEEEEEEEEEEecceeeecccc
Q 003511 89 VISGVVQGLNATVFAYGSTGSGKTYTMVGTKS---DPGLMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEK 165 (814)
Q Consensus 89 lV~~vl~GyN~tIfAYGqTGSGKTyTM~G~~~---~~GIIpral~~LF~~i~~~~~~~~f~VsvSylEIYnE~I~DLL~~ 165 (814)
+|+++++|+|+||||||+|||||||||+|+.. ++|||||++++||+.+..... ..|.|+|||+|||||+|+|||++
T Consensus 73 lv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~-~~~~v~~S~~Eiy~e~v~DLL~~ 151 (333)
T cd01371 73 LVDSVLEGYNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAEN-VQFLVRVSYLEIYNEEVRDLLGK 151 (333)
T ss_pred HHHHHhCCCceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccC-ccEEEEEEEEEeeCCeeeeCCCC
Confidence 99999999999999999999999999999887 899999999999999987654 78999999999999999999997
Q ss_pred cc-CcceeeecCCCCeeecCeEEEEecChHHHHHHHHhhhhcCCCccccCCCCCCCCeEEEEEEEEEEeccc-cCCceeE
Q 003511 166 SS-AHLELREDPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTE-YCNQVMR 243 (814)
Q Consensus 166 ~~-~~L~ired~~~g~~V~gLtev~V~S~ee~~~lL~~G~~~R~~~~T~~N~~SSRSHaIftI~V~~~~~~~-~~~~~~~ 243 (814)
.. ..+.+++++.++++|.|++++.|.|++|+..+|..|.++|.++.|.+|..|||||+||+|+|++..... .......
T Consensus 152 ~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~ 231 (333)
T cd01371 152 DQKKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRV 231 (333)
T ss_pred CCCCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEE
Confidence 75 679999999999999999999999999999999999999999999999999999999999999876643 2345678
Q ss_pred EEEEEEEcCCCcccccccCcchhhHHHHHhhHhHHHHHHHHHHhcCCCCCCCcccccccchhhhhhcccCCCCcceeEEE
Q 003511 244 GKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVA 323 (814)
Q Consensus 244 SkL~fVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~VI~aLs~~~k~~~~hIPYRdSKLTrLLkdsLGGnskT~mIa 323 (814)
|+|+|||||||||..+++..+.+++|+..||+||.+|++||.+|+.+.+ .||||||||||+||+|+|||||+|+||+
T Consensus 232 s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~---~~ipyR~SkLT~lL~~~l~g~s~t~~I~ 308 (333)
T cd01371 232 GKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKS---THIPYRDSKLTRLLQDSLGGNSKTVMCA 308 (333)
T ss_pred EEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCC---CcCCCccCHHHHHHHHhcCCCceEEEEE
Confidence 9999999999999999999999999999999999999999999987542 5899999999999999999999999999
Q ss_pred eeCCCCCChHHHHHHHHHHHHHhhc
Q 003511 324 TISPVDSQYHHTLNTLKYADRAKKI 348 (814)
Q Consensus 324 tISPs~~~~eETlsTLrfA~Rak~I 348 (814)
||+|...+++||++||+||+|||+|
T Consensus 309 ~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 309 NIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred EeCCccccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999987
No 16
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=3.5e-75 Score=633.33 Aligned_cols=313 Identities=39% Similarity=0.628 Sum_probs=288.1
Q ss_pred ceEEEEEeCCCCCCcCC-CCeEEEeCC-----cEEEEECCCCCchhhhhccccCCcceeeeeeecCCCCCcHHHHHHHHh
Q 003511 14 TLTVAIKCRPLTEREQG-RDIVRVKHD-----KEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGPGCTNLDVYTACIS 87 (814)
Q Consensus 14 ~IkV~VRvRPl~~~E~~-~~~v~v~~~-----~~Vvv~dp~~~~~~~~~~~~~~~~k~F~FD~VF~~~atQeeVy~~~v~ 87 (814)
+|+|+|||||+.+.|.+ ..++.+.++ ..|.+.+|.. ...++.|.||+||+++++|++||+.++.
T Consensus 1 ~i~V~vRvRP~~~~e~~~~~~v~~~~~~~~~~~~v~~~~~~~----------~~~~~~f~FD~vf~~~~~q~~vy~~~~~ 70 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDSSSCVRGIDSDQGQAKSVEIENPRN----------RGETKKYQFDAFYGTECTQEDIFSREVK 70 (319)
T ss_pred CcEEEEEeCcCCccccCCCceEEEeCCCCCcceEEEEeCCCC----------CCCccEEecCeEECCCCCHHHHHHHHHH
Confidence 58999999999988854 346666444 4667776632 2346789999999999999999999999
Q ss_pred hhHhhhccCcceEEEeeccCCCCcceeeccCCCCCCchhhhHHHHHHHHhhcCCCCeEEEEEEEEEEecceeeecccccc
Q 003511 88 SVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKSS 167 (814)
Q Consensus 88 plV~~vl~GyN~tIfAYGqTGSGKTyTM~G~~~~~GIIpral~~LF~~i~~~~~~~~f~VsvSylEIYnE~I~DLL~~~~ 167 (814)
|+|+.+++|||+||||||||||||||||+|+..++|||||++++||+.+++.. ..|.|++||+|||||+|+|||++..
T Consensus 71 plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~~~ 148 (319)
T cd01376 71 PIVPHLLSGQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQA--WTGAFSMSYYEIYNEKVYDLLEPAK 148 (319)
T ss_pred HHHHHHhCCCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhcc--ccceEEEEEEEEECCEeeEccCCCC
Confidence 99999999999999999999999999999999999999999999999887643 6799999999999999999999888
Q ss_pred CcceeeecCCCCeeecCeEEEEecChHHHHHHHHhhhhcCCCccccCCCCCCCCeEEEEEEEEEEeccccCCceeEEEEE
Q 003511 168 AHLELREDPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYCNQVMRGKLS 247 (814)
Q Consensus 168 ~~L~ired~~~g~~V~gLtev~V~S~ee~~~lL~~G~~~R~~~~T~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~SkL~ 247 (814)
..+.+++++.++++|.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|.|.+.... ....|+|+
T Consensus 149 ~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~----~~~~s~l~ 224 (319)
T cd01376 149 KELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN----IQLEGKLN 224 (319)
T ss_pred CCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC----ceEEEEEE
Confidence 88999999999999999999999999999999999999999999999999999999999999877542 36789999
Q ss_pred EEEcCCCcccccccCcchhhHHHHHhhHhHHHHHHHHHHhcCCCCCCCcccccccchhhhhhcccCCCCcceeEEEeeCC
Q 003511 248 LVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISP 327 (814)
Q Consensus 248 fVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~VI~aLs~~~k~~~~hIPYRdSKLTrLLkdsLGGnskT~mIatISP 327 (814)
|||||||||..+++..|.+++|+..||+||.+|++||.+|+.+. .||||||||||+||+|+|||||+|+||+||||
T Consensus 225 ~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~----~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp 300 (319)
T cd01376 225 LIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGL----PRIPYRESKLTRLLQDSLGGGSRCIMVANIAP 300 (319)
T ss_pred EEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCC----CcCCCccCHHHHHHHHhcCCCccEEEEEEeCC
Confidence 99999999999999999999999999999999999999998653 58999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHh
Q 003511 328 VDSQYHHTLNTLKYADRAK 346 (814)
Q Consensus 328 s~~~~eETlsTLrfA~Rak 346 (814)
...+++||++||+||+|||
T Consensus 301 ~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 301 ERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred chhhHHHHHHHHHHHHhhC
Confidence 9999999999999999986
No 17
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=3.7e-75 Score=633.35 Aligned_cols=318 Identities=42% Similarity=0.697 Sum_probs=293.4
Q ss_pred ceEEEEEeCCCCCCcC--CCCeEEEeCCcEEEEECCCCCchhhhhccccCCcceeeeeeecCCCCCcHHHHHHHHhhhHh
Q 003511 14 TLTVAIKCRPLTEREQ--GRDIVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGPGCTNLDVYTACISSVIS 91 (814)
Q Consensus 14 ~IkV~VRvRPl~~~E~--~~~~v~v~~~~~Vvv~dp~~~~~~~~~~~~~~~~k~F~FD~VF~~~atQeeVy~~~v~plV~ 91 (814)
+|+|+||+||+.+.|. ...++.+.++..|++.+| ...+.|.||+||+++++|++||+.++.|+|+
T Consensus 1 ~V~V~vRvRP~~~~e~~~~~~~~~~~~~~~v~~~~~-------------~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~ 67 (321)
T cd01374 1 KIKVSVRVRPLNPRESDNEQVAWSIDNDNTISLEES-------------TPGQSFTFDRVFGGESTNREVYERIAKPVVR 67 (321)
T ss_pred CeEEEEEcCcCCcccccCCcceEEECCCCEEEEcCC-------------CCCeEEecCeEECCCCCHHHHHHHHHHHHHH
Confidence 5999999999999875 344566666656666553 2358999999999999999999999999999
Q ss_pred hhccCcceEEEeeccCCCCcceeeccCCCCCCchhhhHHHHHHHHhhcCCCCeEEEEEEEEEEecceeeeccccccCcce
Q 003511 92 GVVQGLNATVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKSSAHLE 171 (814)
Q Consensus 92 ~vl~GyN~tIfAYGqTGSGKTyTM~G~~~~~GIIpral~~LF~~i~~~~~~~~f~VsvSylEIYnE~I~DLL~~~~~~L~ 171 (814)
++++|+|+||||||||||||||||+|+..++|||||++++||+.+.... ...|.|+|||+|||||+|+|||++....+.
T Consensus 68 ~~l~G~n~~i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~ 146 (321)
T cd01374 68 SALEGYNGTIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTP-DREFLLRVSYLEIYNEKIKDLLSPSPQELR 146 (321)
T ss_pred HHHCCCceeEEeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhccc-CceEEEEEEEEEEEcCEeEEccCCCCCCce
Confidence 9999999999999999999999999999999999999999999997755 568999999999999999999999888999
Q ss_pred eeecCCCCeeecCeEEEEecChHHHHHHHHhhhhcCCCccccCCCCCCCCeEEEEEEEEEEeccc-cCCceeEEEEEEEE
Q 003511 172 LREDPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTE-YCNQVMRGKLSLVD 250 (814)
Q Consensus 172 ired~~~g~~V~gLtev~V~S~ee~~~lL~~G~~~R~~~~T~~N~~SSRSHaIftI~V~~~~~~~-~~~~~~~SkL~fVD 250 (814)
+++++.++++|.|++++.|.|++|++.+|..|.++|++++|.+|..|||||+||+|+|.+..... ..+....|+|+|||
T Consensus 147 i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vD 226 (321)
T cd01374 147 IREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLID 226 (321)
T ss_pred EEECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999877554 23567789999999
Q ss_pred cCCCcccccccCcchhhHHHHHhhHhHHHHHHHHHHhcCCCCCCCcccccccchhhhhhcccCCCCcceeEEEeeCCCCC
Q 003511 251 LAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDS 330 (814)
Q Consensus 251 LAGSER~~~t~~~g~rlkE~~~INkSL~aLg~VI~aLs~~~k~~~~hIPYRdSKLTrLLkdsLGGnskT~mIatISPs~~ 330 (814)
||||||..+.+ .+.+++|+..||+||.+|++||.+|+..++ ..||||||||||+||+|+|||||+|+||+||||...
T Consensus 227 LAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~--~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~ 303 (321)
T cd01374 227 LAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKN--SGHIPYRDSKLTRILQPSLSGNARTAIICTISPASS 303 (321)
T ss_pred CCCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCC--CCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccc
Confidence 99999999988 899999999999999999999999998652 369999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhhc
Q 003511 331 QYHHTLNTLKYADRAKKI 348 (814)
Q Consensus 331 ~~eETlsTLrfA~Rak~I 348 (814)
+++||++||+||+||++|
T Consensus 304 ~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 304 HVEETLNTLKFASRAKKV 321 (321)
T ss_pred cHHHHHHHHHHHHHHhcC
Confidence 999999999999999986
No 18
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=1.8e-74 Score=632.36 Aligned_cols=321 Identities=42% Similarity=0.697 Sum_probs=290.7
Q ss_pred CceEEEEEeCCCCCCcCCC---CeEEEeCCcEEEEECCCCCchhhhhccccCCcceeeeeeecCCCCCcHHHHHHHHhhh
Q 003511 13 TTLTVAIKCRPLTEREQGR---DIVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGPGCTNLDVYTACISSV 89 (814)
Q Consensus 13 ~~IkV~VRvRPl~~~E~~~---~~v~v~~~~~Vvv~dp~~~~~~~~~~~~~~~~k~F~FD~VF~~~atQeeVy~~~v~pl 89 (814)
.+|+|+||+||+.+.|... .++.+.+++..++..+ ++.|.||+||+++++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~---------------~~~f~FD~vf~~~~~q~~vy~~~~~pl 65 (341)
T cd01372 1 SSVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT---------------DKSFTFDYVFDPSTSQEEVYNTCVAPL 65 (341)
T ss_pred CCeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC---------------CcEEeccccCCCCCCHHHHHHHHHHHH
Confidence 3699999999999888532 3454443322222221 578999999999999999999999999
Q ss_pred HhhhccCcceEEEeeccCCCCcceeeccCC------CCCCchhhhHHHHHHHHhhcCCCCeEEEEEEEEEEecceeeecc
Q 003511 90 ISGVVQGLNATVFAYGSTGSGKTYTMVGTK------SDPGLMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLL 163 (814)
Q Consensus 90 V~~vl~GyN~tIfAYGqTGSGKTyTM~G~~------~~~GIIpral~~LF~~i~~~~~~~~f~VsvSylEIYnE~I~DLL 163 (814)
|+.+++|||+||||||||||||||||+|+. .++|||||++++||+.+........|.|+|||+|||||+|+|||
T Consensus 66 v~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL 145 (341)
T cd01372 66 VDGLFEGYNATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLL 145 (341)
T ss_pred HHHHhCCCccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCC
Confidence 999999999999999999999999999974 56899999999999999987766899999999999999999999
Q ss_pred ccc---cCcceeeecCCCCeeecCeEEEEecChHHHHHHHHhhhhcCCCccccCCCCCCCCeEEEEEEEEEEeccc----
Q 003511 164 EKS---SAHLELREDPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTE---- 236 (814)
Q Consensus 164 ~~~---~~~L~ired~~~g~~V~gLtev~V~S~ee~~~lL~~G~~~R~~~~T~~N~~SSRSHaIftI~V~~~~~~~---- 236 (814)
++. ...+.+++++.++++|.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+.....
T Consensus 146 ~~~~~~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~ 225 (341)
T cd01372 146 SPSTSEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAP 225 (341)
T ss_pred CCcccCCCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCcccc
Confidence 976 5789999999999999999999999999999999999999999999999999999999999999887641
Q ss_pred ----cCCceeEEEEEEEEcCCCcccccccCcchhhHHHHHhhHhHHHHHHHHHHhcCCCCCCCcccccccchhhhhhccc
Q 003511 237 ----YCNQVMRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTRILKDG 312 (814)
Q Consensus 237 ----~~~~~~~SkL~fVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~VI~aLs~~~k~~~~hIPYRdSKLTrLLkds 312 (814)
.......|+|+||||||||+..++++.+.+++|+..||+||.+|++||.+|+..++ ...||||||||||+||+|+
T Consensus 226 ~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~-~~~~ipyR~S~LT~lL~~~ 304 (341)
T cd01372 226 MSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESK-KGSHVPYRDSKLTRLLQDS 304 (341)
T ss_pred ccccCCCceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCC-CCCCCCCcccHHHHHHHHh
Confidence 22456789999999999999999999999999999999999999999999987654 3479999999999999999
Q ss_pred CCCCcceeEEEeeCCCCCChHHHHHHHHHHHHHhhcc
Q 003511 313 LSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKIK 349 (814)
Q Consensus 313 LGGnskT~mIatISPs~~~~eETlsTLrfA~Rak~Ik 349 (814)
||||++|+||+||||+..+++||++||+||+|||+||
T Consensus 305 Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 305 LGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred cCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999996
No 19
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=3.7e-74 Score=629.02 Aligned_cols=325 Identities=37% Similarity=0.564 Sum_probs=293.5
Q ss_pred ceEEEEEeCCCCCCcCCCCeEEEeCCcEEEEECCCCCchhhhhccccCCcceeeeeeecCCCCCcHHHHHHHHhhhHhhh
Q 003511 14 TLTVAIKCRPLTEREQGRDIVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGPGCTNLDVYTACISSVISGV 93 (814)
Q Consensus 14 ~IkV~VRvRPl~~~E~~~~~v~v~~~~~Vvv~dp~~~~~~~~~~~~~~~~k~F~FD~VF~~~atQeeVy~~~v~plV~~v 93 (814)
+|+|+||+||+...+.+ .+....++..|.+..|+.... ..+.+....+.|.||+||++ ++|++||+.++.|+|+++
T Consensus 1 ~i~V~vRvRP~~~~~~~-~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~ 76 (334)
T cd01375 1 TIQVFVRVRPTPTKQGS-SIKLGPDGKSVSSNLPKDLVR--GVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSA 76 (334)
T ss_pred CeEEEEECCCCCCCCCc-cEEEcCCCCEEEEeccccccc--ccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHH
Confidence 58999999999986543 344455667778877765332 22344556789999999999 999999999999999999
Q ss_pred ccCcceEEEeeccCCCCcceeeccCC---CCCCchhhhHHHHHHHHhhcCCCCeEEEEEEEEEEecceeeecccccc---
Q 003511 94 VQGLNATVFAYGSTGSGKTYTMVGTK---SDPGLMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKSS--- 167 (814)
Q Consensus 94 l~GyN~tIfAYGqTGSGKTyTM~G~~---~~~GIIpral~~LF~~i~~~~~~~~f~VsvSylEIYnE~I~DLL~~~~--- 167 (814)
++|+|+||||||||||||||||+|+. .++|||||++++||+.++... ...|.|++||+|||||+|+|||++..
T Consensus 77 ~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~ 155 (334)
T cd01375 77 LDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRA-TKTYTVHVSYLEIYNEQLYDLLGDTPEAL 155 (334)
T ss_pred hCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhcc-CcceEEEEEEEEEECCEeecCCCCCcccc
Confidence 99999999999999999999999976 478999999999999998754 56799999999999999999999774
Q ss_pred ---CcceeeecCCCCeeecCeEEEEecChHHHHHHHHhhhhcCCCccccCCCCCCCCeEEEEEEEEEEeccccCCceeEE
Q 003511 168 ---AHLELREDPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYCNQVMRG 244 (814)
Q Consensus 168 ---~~L~ired~~~g~~V~gLtev~V~S~ee~~~lL~~G~~~R~~~~T~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~S 244 (814)
..+.+++++.++++|.|++++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+............|
T Consensus 156 ~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~~s 235 (334)
T cd01375 156 ESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRLS 235 (334)
T ss_pred ccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999998665555677889
Q ss_pred EEEEEEcCCCcccccccCcchhhHHHHHhhHhHHHHHHHHHHhcCCCCCCCcccccccchhhhhhcccCCCCcceeEEEe
Q 003511 245 KLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVAT 324 (814)
Q Consensus 245 kL~fVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~VI~aLs~~~k~~~~hIPYRdSKLTrLLkdsLGGnskT~mIat 324 (814)
+|+|||||||||..+++..+..++|+..||+||++|++||.+|+... ..||||||||||+||+|+|||||+|+||+|
T Consensus 236 ~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~---~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~ 312 (334)
T cd01375 236 KLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKA---RTHVPYRNSKLTHVLRDSLGGNCKTVMLAT 312 (334)
T ss_pred EEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCC---CCCCCCcccHHHHHHHHhcCCCceEEEEEE
Confidence 99999999999999999999999999999999999999999998754 358999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHHHHh
Q 003511 325 ISPVDSQYHHTLNTLKYADRAK 346 (814)
Q Consensus 325 ISPs~~~~eETlsTLrfA~Rak 346 (814)
|||+..+++||++||+||+|++
T Consensus 313 vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 313 IWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred eCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999985
No 20
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=2.8e-72 Score=612.29 Aligned_cols=319 Identities=37% Similarity=0.624 Sum_probs=293.2
Q ss_pred CceEEEEEeCCCCCCcC--CCCeEEEeCC--cEEEEECCCCCchhhhhccccCCcceeeeeeecCCCCCcHHHHHHHHhh
Q 003511 13 TTLTVAIKCRPLTEREQ--GRDIVRVKHD--KEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGPGCTNLDVYTACISS 88 (814)
Q Consensus 13 ~~IkV~VRvRPl~~~E~--~~~~v~v~~~--~~Vvv~dp~~~~~~~~~~~~~~~~k~F~FD~VF~~~atQeeVy~~~v~p 88 (814)
++|+|+||+||+.+.|. ...++.+.+. ..+.+.++ ....+.|.||+||+++++|++||+. +.|
T Consensus 2 ~~i~V~vRirP~~~~e~~~~~~~~~~~~~~~~~i~~~~~------------~~~~~~f~fD~vf~~~~~q~~v~~~-v~p 68 (329)
T cd01366 2 GNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKG------------TGKKKSFSFDRVFDPDASQEDVFEE-VSP 68 (329)
T ss_pred CCEEEEEEcCcCCccccCCCccEEEEcCCCceEEEEeCC------------CCCceEEecCEEECCCCCHHHHHHH-HHH
Confidence 68999999999999885 3456777655 44444332 1346789999999999999999997 699
Q ss_pred hHhhhccCcceEEEeeccCCCCcceeeccCCCCCCchhhhHHHHHHHHhhcCC-CCeEEEEEEEEEEecceeeeccccc-
Q 003511 89 VISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTIFDLIKKDKN-SDEFEVSCSYLEVYNEVIYDLLEKS- 166 (814)
Q Consensus 89 lV~~vl~GyN~tIfAYGqTGSGKTyTM~G~~~~~GIIpral~~LF~~i~~~~~-~~~f~VsvSylEIYnE~I~DLL~~~- 166 (814)
+|+++++|+|+||||||+|||||||||+|+..++||+||++++||+.+..... ...|.|++||+|||||+|+|||++.
T Consensus 69 ~v~~~~~G~~~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~ 148 (329)
T cd01366 69 LVQSALDGYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKP 148 (329)
T ss_pred HHHHHhCCCceEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCc
Confidence 99999999999999999999999999999999999999999999999987654 5789999999999999999999986
Q ss_pred --cCcceeeecCCCCeeecCeEEEEecChHHHHHHHHhhhhcCCCccccCCCCCCCCeEEEEEEEEEEeccccCCceeEE
Q 003511 167 --SAHLELREDPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYCNQVMRG 244 (814)
Q Consensus 167 --~~~L~ired~~~g~~V~gLtev~V~S~ee~~~lL~~G~~~R~~~~T~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~S 244 (814)
...+.+++++.++++|.|++++.|.|++|+..+|..|.++|.++.|.+|..|||||+||+|+|.+.... .+....|
T Consensus 149 ~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~--~~~~~~s 226 (329)
T cd01366 149 APKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ--TGEQTRG 226 (329)
T ss_pred CCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC--CCcEEEE
Confidence 678999999999999999999999999999999999999999999999999999999999999987654 3567889
Q ss_pred EEEEEEcCCCcccccccCcchhhHHHHHhhHhHHHHHHHHHHhcCCCCCCCcccccccchhhhhhcccCCCCcceeEEEe
Q 003511 245 KLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVAT 324 (814)
Q Consensus 245 kL~fVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~VI~aLs~~~k~~~~hIPYRdSKLTrLLkdsLGGnskT~mIat 324 (814)
+|+||||||+|+..+++..+.+++|+..||+||.+|++||.+|+.. ..||||||||||+||+|+||||++|+||+|
T Consensus 227 ~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~----~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~ 302 (329)
T cd01366 227 KLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSK----DSHVPYRNSKLTYLLQDSLGGNSKTLMFVN 302 (329)
T ss_pred EEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcC----CCcCCCcccHhHHHHHHhcCCCceEEEEEE
Confidence 9999999999999999999999999999999999999999999875 368999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHHHHhhccc
Q 003511 325 ISPVDSQYHHTLNTLKYADRAKKIKT 350 (814)
Q Consensus 325 ISPs~~~~eETlsTLrfA~Rak~Ikn 350 (814)
|||...+++||++||+||+||++|++
T Consensus 303 vsp~~~~~~etl~tL~~a~~~~~i~~ 328 (329)
T cd01366 303 ISPLESNLSETLCSLRFASRVRSVEL 328 (329)
T ss_pred eCCchhhHHHHHHHHHHHHHhhcccC
Confidence 99999999999999999999999986
No 21
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=1.7e-71 Score=606.89 Aligned_cols=330 Identities=45% Similarity=0.701 Sum_probs=303.6
Q ss_pred ceEEEEEeCCCCCCcCC---CCeEEEeCC--cEEEEECCCCCchhhhhccccCCcceeeeeeecCCCCCcHHHHHHHHhh
Q 003511 14 TLTVAIKCRPLTEREQG---RDIVRVKHD--KEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGPGCTNLDVYTACISS 88 (814)
Q Consensus 14 ~IkV~VRvRPl~~~E~~---~~~v~v~~~--~~Vvv~dp~~~~~~~~~~~~~~~~k~F~FD~VF~~~atQeeVy~~~v~p 88 (814)
+|+|+|||||+...|.. ..++.+.+. ..|++.++. +...++.|.||+||+++++|++||+.++.|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~----------~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p 70 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPK----------NRKEEKKFTFDKVFGATASQEDVFEETAAP 70 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCC----------CCCCCeEEecCEEECCCCChHHHHHHHHHH
Confidence 58999999999998853 346666544 366666543 234578999999999999999999999999
Q ss_pred hHhhhccCcceEEEeeccCCCCcceeeccCCCCCCchhhhHHHHHHHHhhcCCCCeEEEEEEEEEEecceeeeccccccC
Q 003511 89 VISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKSSA 168 (814)
Q Consensus 89 lV~~vl~GyN~tIfAYGqTGSGKTyTM~G~~~~~GIIpral~~LF~~i~~~~~~~~f~VsvSylEIYnE~I~DLL~~~~~ 168 (814)
+|+.+++|+|+||||||+|||||||||+|+..++||+||++++||+.+........|.|+|||+|||+|+|+|||++.+.
T Consensus 71 ~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~ 150 (335)
T smart00129 71 LVDSVLEGYNATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPK 150 (335)
T ss_pred HHHHHhcCCceeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCC
Confidence 99999999999999999999999999999999999999999999999987766778999999999999999999999889
Q ss_pred cceeeecCCCCeeecCeEEEEecChHHHHHHHHhhhhcCCCccccCCCCCCCCeEEEEEEEEEEeccccCCceeEEEEEE
Q 003511 169 HLELREDPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYCNQVMRGKLSL 248 (814)
Q Consensus 169 ~L~ired~~~g~~V~gLtev~V~S~ee~~~lL~~G~~~R~~~~T~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~SkL~f 248 (814)
.+.+++++.+++++.|++++.|.|++|++++|..|.++|.+++|.+|..|||||+||+|+|.+............|+|+|
T Consensus 151 ~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~ 230 (335)
T smart00129 151 KLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNL 230 (335)
T ss_pred CcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999875444456778999999
Q ss_pred EEcCCCcccccccCcchhhHHHHHhhHhHHHHHHHHHHhcCCCCCCCcccccccchhhhhhcccCCCCcceeEEEeeCCC
Q 003511 249 VDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPV 328 (814)
Q Consensus 249 VDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~VI~aLs~~~k~~~~hIPYRdSKLTrLLkdsLGGnskT~mIatISPs 328 (814)
|||||+|+....++.+.+++|+..||+||.+|++||.+|++.. +..|||||+|+||+||+++|+|+++|+||+||||.
T Consensus 231 VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~--~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~ 308 (335)
T smart00129 231 VDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQ--KSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPS 308 (335)
T ss_pred EECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcC--CCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCC
Confidence 9999999999999999999999999999999999999998753 24699999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHhhcccccccc
Q 003511 329 DSQYHHTLNTLKYADRAKKIKTHIQKN 355 (814)
Q Consensus 329 ~~~~eETlsTLrfA~Rak~Ikn~~~~N 355 (814)
..+++||++||+||+++++|++.|++|
T Consensus 309 ~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 309 LSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred ccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 999999999999999999999999764
No 22
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=1.5e-70 Score=597.26 Aligned_cols=323 Identities=46% Similarity=0.736 Sum_probs=298.2
Q ss_pred ceEEEEEeCCCCCCc--CCCCeEEEeCCcEEEEECCCCCchhhhhccccCCcceeeeeeecCCCCCcHHHHHHHHhhhHh
Q 003511 14 TLTVAIKCRPLTERE--QGRDIVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGPGCTNLDVYTACISSVIS 91 (814)
Q Consensus 14 ~IkV~VRvRPl~~~E--~~~~~v~v~~~~~Vvv~dp~~~~~~~~~~~~~~~~k~F~FD~VF~~~atQeeVy~~~v~plV~ 91 (814)
+|+|+||+||+...| ....++.+.++++|++.+|... ....++.|.||+||+++++|++||+.++.|+|+
T Consensus 1 ~i~V~vRvrP~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~ 72 (328)
T cd00106 1 NIRVVVRIRPLNGRESKSEESCITVDDNKTVTLTPPKDG--------RKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVE 72 (328)
T ss_pred CeEEEEEcCCCCcccccCCCcEEEECCCCEEEEecCccc--------cCcCceEEECCeEEcCCCCHHHHHHHHHHHHHH
Confidence 589999999999877 3556788877788888886532 234578999999999999999999999999999
Q ss_pred hhccCcceEEEeeccCCCCcceeeccCCCCCCchhhhHHHHHHHHhhcCC-CCeEEEEEEEEEEecceeeeccccc--cC
Q 003511 92 GVVQGLNATVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTIFDLIKKDKN-SDEFEVSCSYLEVYNEVIYDLLEKS--SA 168 (814)
Q Consensus 92 ~vl~GyN~tIfAYGqTGSGKTyTM~G~~~~~GIIpral~~LF~~i~~~~~-~~~f~VsvSylEIYnE~I~DLL~~~--~~ 168 (814)
++++|+|+||||||+|||||||||+|+..++|||||++++||+.+..... ...|.|++||+|||+|+|+|||++. ..
T Consensus 73 ~~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~ 152 (328)
T cd00106 73 SVLEGYNGTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSK 152 (328)
T ss_pred HHhCCCceeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCC
Confidence 99999999999999999999999999999999999999999999987653 4679999999999999999999997 88
Q ss_pred cceeeecCCCCeeecCeEEEEecChHHHHHHHHhhhhcCCCccccCCCCCCCCeEEEEEEEEEEeccccCCceeEEEEEE
Q 003511 169 HLELREDPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYCNQVMRGKLSL 248 (814)
Q Consensus 169 ~L~ired~~~g~~V~gLtev~V~S~ee~~~lL~~G~~~R~~~~T~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~SkL~f 248 (814)
.+.+++++.+++++.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+............|+|+|
T Consensus 153 ~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~ 232 (328)
T cd00106 153 PLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNL 232 (328)
T ss_pred CcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999987765333478899999
Q ss_pred EEcCCCcccccccCcchhhHHHHHhhHhHHHHHHHHHHhcCCCCCCCcccccccchhhhhhcccCCCCcceeEEEeeCCC
Q 003511 249 VDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPV 328 (814)
Q Consensus 249 VDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~VI~aLs~~~k~~~~hIPYRdSKLTrLLkdsLGGnskT~mIatISPs 328 (814)
|||||+|+....+..+.+++|+..||+||.+|++||.+|+...+ ..|||||+||||+||+|+|+|+++|+||+||+|.
T Consensus 233 VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~--~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~ 310 (328)
T cd00106 233 VDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQK--KKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPS 310 (328)
T ss_pred EECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCC--CCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCc
Confidence 99999999999999999999999999999999999999987652 3689999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHh
Q 003511 329 DSQYHHTLNTLKYADRAK 346 (814)
Q Consensus 329 ~~~~eETlsTLrfA~Rak 346 (814)
..+++||++||+||+|||
T Consensus 311 ~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 311 SENYDETLSTLRFASRAK 328 (328)
T ss_pred hhhHHHHHHHHHHHHhcC
Confidence 999999999999999986
No 23
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-69 Score=613.99 Aligned_cols=345 Identities=36% Similarity=0.621 Sum_probs=308.7
Q ss_pred CCCCceEEEEEeCCCCCCcCCCCeEEEeCCcEEEEECCCCCchhhhhccccCCcceeeeeeecCCCCCcHHHHHHHHhhh
Q 003511 10 KKSTTLTVAIKCRPLTEREQGRDIVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGPGCTNLDVYTACISSV 89 (814)
Q Consensus 10 ~~~~~IkV~VRvRPl~~~E~~~~~v~v~~~~~Vvv~dp~~~~~~~~~~~~~~~~k~F~FD~VF~~~atQeeVy~~~v~pl 89 (814)
.....|.|++|+||+.+.-....|++|.++.+|++..|.-...+.. ......++.|.|.+||+|+++|.+||+.++.|+
T Consensus 28 ~~~d~v~v~~rvrP~~~~~~~~g~l~v~n~~tivL~~P~d~~~~~~-~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~pl 106 (809)
T KOG0247|consen 28 ESKDPVLVVCRVRPLSDASEDEGCLRVINEETIVLETPEDSFARRS-VNGGQMEKKFSFTKVFGPSVTQADVFDTTVAPL 106 (809)
T ss_pred hhhcchheeEeecCCCCCccccceEEEeccceeEeeCcHHHHhhhc-cCccceeeEeeeeeecCCCccHHHHHHHHhHHH
Confidence 4457899999999998755567899999999999987753222211 244566899999999999999999999999999
Q ss_pred HhhhccCcceEEEeeccCCCCcceeeccCCCCCCchhhhHHHHHHHHhhcC-----------------------------
Q 003511 90 ISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTIFDLIKKDK----------------------------- 140 (814)
Q Consensus 90 V~~vl~GyN~tIfAYGqTGSGKTyTM~G~~~~~GIIpral~~LF~~i~~~~----------------------------- 140 (814)
|.+++.|.|..+|+||.|||||||||+|++.++||+||+++.||..|....
T Consensus 107 V~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr~ 186 (809)
T KOG0247|consen 107 VKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKRE 186 (809)
T ss_pred HHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999999999999999985410
Q ss_pred -----------------------------------CCCeEEEEEEEEEEecceeeeccccccC------cceeeecCCCC
Q 003511 141 -----------------------------------NSDEFEVSCSYLEVYNEVIYDLLEKSSA------HLELREDPMHG 179 (814)
Q Consensus 141 -----------------------------------~~~~f~VsvSylEIYnE~I~DLL~~~~~------~L~ired~~~g 179 (814)
.+..|.|.|||+|||||-|||||.+.+. ...+++|.++.
T Consensus 187 ~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~~~ 266 (809)
T KOG0247|consen 187 AMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDTNGN 266 (809)
T ss_pred hccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhccCCC
Confidence 1235899999999999999999986532 26788999999
Q ss_pred eeecCeEEEEecChHHHHHHHHhhhhcCCCccccCCCCCCCCeEEEEEEEEEEeccccCCceeEEEEEEEEcCCCccccc
Q 003511 180 IVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYCNQVMRGKLSLVDLAGSERASE 259 (814)
Q Consensus 180 ~~V~gLtev~V~S~ee~~~lL~~G~~~R~~~~T~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~SkL~fVDLAGSER~~~ 259 (814)
.+|+|+++|.|.|.+|++++|..|.++|++++|..|..|||||+||+|.+.+-...+.......|.|.|||||||||..+
T Consensus 267 ~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGSERt~r 346 (809)
T KOG0247|consen 267 MYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGSERTNR 346 (809)
T ss_pred eeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeeecccchhccc
Confidence 99999999999999999999999999999999999999999999999999988777666788899999999999999999
Q ss_pred ccCcchhhHHHHHhhHhHHHHHHHHHHhcCCCCC-CCcccccccchhhhhhcccCCCCcceeEEEeeCCCCCChHHHHHH
Q 003511 260 ANSGGQKLRDGANINRSLLALANCINALGKPQKK-GLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNT 338 (814)
Q Consensus 260 t~~~g~rlkE~~~INkSL~aLg~VI~aLs~~~k~-~~~hIPYRdSKLTrLLkdsLGGnskT~mIatISPs~~~~eETlsT 338 (814)
+++.|.|++|+++||.||++||+||.+|...++. ...+|||||||||++++.+|.|..+.+||+||+|.+.+|+|+++.
T Consensus 347 tq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEnl~v 426 (809)
T KOG0247|consen 347 TQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDENLNV 426 (809)
T ss_pred ccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHHHHH
Confidence 9999999999999999999999999999876543 236899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccccc
Q 003511 339 LKYADRAKKIKTHIQKN 355 (814)
Q Consensus 339 LrfA~Rak~Ikn~~~~N 355 (814)
|+||..|..|.....++
T Consensus 427 lkFaeiaq~v~v~~~~~ 443 (809)
T KOG0247|consen 427 LKFAEIAQEVEVARPVI 443 (809)
T ss_pred HHHHHhcccccccCccc
Confidence 99999999998765544
No 24
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=7.4e-71 Score=643.01 Aligned_cols=327 Identities=37% Similarity=0.607 Sum_probs=294.1
Q ss_pred CCceEEEEEeCCCCCCcCCCC---eEEEeCCcEEEEECCCCCchhhhhccccCCcceeeeeeecCCCCCcHHHHHHHHhh
Q 003511 12 STTLTVAIKCRPLTEREQGRD---IVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGPGCTNLDVYTACISS 88 (814)
Q Consensus 12 ~~~IkV~VRvRPl~~~E~~~~---~v~v~~~~~Vvv~dp~~~~~~~~~~~~~~~~k~F~FD~VF~~~atQeeVy~~~v~p 88 (814)
.++|+|++||||+.+.|.... ++...+...|.+..|.... ....+.|.||+||+|.++|++||.+ +.|
T Consensus 313 kGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~f~fdkVf~p~~sQ~~VF~e-~~~ 383 (670)
T KOG0239|consen 313 KGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGD--------KLEPQSFKFDKVFGPLASQDDVFEE-VSP 383 (670)
T ss_pred hcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCC--------CCccccceeeeecCCcccHHHHHHH-HHH
Confidence 489999999999999886542 2222222346666654311 1123369999999999999999966 899
Q ss_pred hHhhhccCcceEEEeeccCCCCcceeecc-CCCCCCchhhhHHHHHHHHhhcCCCCeEEEEEEEEEEecceeeeccccc-
Q 003511 89 VISGVVQGLNATVFAYGSTGSGKTYTMVG-TKSDPGLMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKS- 166 (814)
Q Consensus 89 lV~~vl~GyN~tIfAYGqTGSGKTyTM~G-~~~~~GIIpral~~LF~~i~~~~~~~~f~VsvSylEIYnE~I~DLL~~~- 166 (814)
+|.++|+|||+||||||||||||||||.| +++++|||||++++||..+........|.+.+||+|||||.|+|||++.
T Consensus 384 lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~ 463 (670)
T KOG0239|consen 384 LVQSALDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDES 463 (670)
T ss_pred HHHHHhcCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccc
Confidence 99999999999999999999999999999 6899999999999999999988888899999999999999999999987
Q ss_pred -cCcceeeecCCCCeeecCeEEEEecChHHHHHHHHhhhhcCCCccccCCCCCCCCeEEEEEEEEEEeccccCCceeEEE
Q 003511 167 -SAHLELREDPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYCNQVMRGK 245 (814)
Q Consensus 167 -~~~L~ired~~~g~~V~gLtev~V~S~ee~~~lL~~G~~~R~~~~T~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~Sk 245 (814)
...+.|++++.++++|.+++.+.|.+.+++..+++.|..+|++++|.+|..|||||+||+|+|.-.+.. .+....+.
T Consensus 464 ~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~--t~~~~~g~ 541 (670)
T KOG0239|consen 464 YVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINEL--TGIRVTGV 541 (670)
T ss_pred cccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccC--cccccccc
Confidence 478999999999999999999999999999999999999999999999999999999999999876433 36677899
Q ss_pred EEEEEcCCCcccccccCcchhhHHHHHhhHhHHHHHHHHHHhcCCCCCCCcccccccchhhhhhcccCCCCcceeEEEee
Q 003511 246 LSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATI 325 (814)
Q Consensus 246 L~fVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~VI~aLs~~~k~~~~hIPYRdSKLTrLLkdsLGGnskT~mIatI 325 (814)
|+|||||||||++++++.|.|++|+.+||+||++||.||.||+.. ..||||||||||+||+|+|||++||+|+++|
T Consensus 542 l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k----~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~i 617 (670)
T KOG0239|consen 542 LNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASK----RSHIPYRNSKLTQLLQDSLGGDSKTLMFVNI 617 (670)
T ss_pred eeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhc----CCCCcccccchHHHhHhhhCCccceeeEEEe
Confidence 999999999999999999999999999999999999999999873 3699999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHhhcccccc
Q 003511 326 SPVDSQYHHTLNTLKYADRAKKIKTHIQ 353 (814)
Q Consensus 326 SPs~~~~eETlsTLrfA~Rak~Ikn~~~ 353 (814)
||...++.||+++|+||.|++.+..-+.
T Consensus 618 sP~~~~~~Etl~sL~FA~rv~~~~lG~a 645 (670)
T KOG0239|consen 618 SPAAAALFETLCSLRFATRVRSVELGSA 645 (670)
T ss_pred CccHHHHhhhhhccchHHHhhceecccc
Confidence 9999999999999999999999875543
No 25
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=7.8e-70 Score=593.25 Aligned_cols=318 Identities=44% Similarity=0.732 Sum_probs=279.3
Q ss_pred EeCCCCCCcCCCC---eEEEeCC--cEEEEECCCCCchhhhhccccCCcceeeeeeecCCCCCcHHHHHHHHhhhHhhhc
Q 003511 20 KCRPLTEREQGRD---IVRVKHD--KEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGPGCTNLDVYTACISSVISGVV 94 (814)
Q Consensus 20 RvRPl~~~E~~~~---~v~v~~~--~~Vvv~dp~~~~~~~~~~~~~~~~k~F~FD~VF~~~atQeeVy~~~v~plV~~vl 94 (814)
||||+++.|.... ++.+.+. ...... .........+.|.||+||+++++|++||+.++.|+|++++
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l 71 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQS---------VNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVL 71 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEE---------TTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHH
T ss_pred CcCCCCHHHHhCCCcEEEEecCCcccccccc---------ccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999985332 2333221 111111 1123445678999999999999999999999999999999
Q ss_pred cCcceEEEeeccCCCCcceeeccC--CCCCCchhhhHHHHHHHHhhcCCC--CeEEEEEEEEEEecceeeeccccc----
Q 003511 95 QGLNATVFAYGSTGSGKTYTMVGT--KSDPGLMVLSLHTIFDLIKKDKNS--DEFEVSCSYLEVYNEVIYDLLEKS---- 166 (814)
Q Consensus 95 ~GyN~tIfAYGqTGSGKTyTM~G~--~~~~GIIpral~~LF~~i~~~~~~--~~f~VsvSylEIYnE~I~DLL~~~---- 166 (814)
+|+|+||||||+|||||||||+|+ ..++|||||++++||..+...... ..|.|+|||+|||||+|+|||++.
T Consensus 72 ~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~ 151 (335)
T PF00225_consen 72 DGYNATIFAYGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKS 151 (335)
T ss_dssp TT-EEEEEEEESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSST
T ss_pred cCCceEEEeeccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCcccccc
Confidence 999999999999999999999999 889999999999999999886653 589999999999999999999987
Q ss_pred cCcceeeecCCCC-eeecCeEEEEecChHHHHHHHHhhhhcCCCccccCCCCCCCCeEEEEEEEEEEeccccCC--ceeE
Q 003511 167 SAHLELREDPMHG-IVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYCN--QVMR 243 (814)
Q Consensus 167 ~~~L~ired~~~g-~~V~gLtev~V~S~ee~~~lL~~G~~~R~~~~T~~N~~SSRSHaIftI~V~~~~~~~~~~--~~~~ 243 (814)
...+.+++++..| ++|.|++++.|.+++|++.+|..|.++|.++.|.+|..|||||+||+|+|.+........ ....
T Consensus 152 ~~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~ 231 (335)
T PF00225_consen 152 RKPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKH 231 (335)
T ss_dssp TSEBEEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEE
T ss_pred ccccceeeccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceee
Confidence 3579999999876 999999999999999999999999999999999999999999999999999988765433 2578
Q ss_pred EEEEEEEcCCCcccccccC-cchhhHHHHHhhHhHHHHHHHHHHhcCCCCCCCcccccccchhhhhhcccCCCCcceeEE
Q 003511 244 GKLSLVDLAGSERASEANS-GGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMV 322 (814)
Q Consensus 244 SkL~fVDLAGSER~~~t~~-~g~rlkE~~~INkSL~aLg~VI~aLs~~~k~~~~hIPYRdSKLTrLLkdsLGGnskT~mI 322 (814)
|+|+||||||+|+..+.++ .+.+++|+..||+||.+|++||.+|+.. ....||||||||||+||+|+|||||+|+||
T Consensus 232 s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~--~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I 309 (335)
T PF00225_consen 232 SRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQG--SKQSHVPYRDSKLTRLLKDSLGGNSKTILI 309 (335)
T ss_dssp EEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCT--TSTSSSCGGGSHHHHHTGGGTSSSSEEEEE
T ss_pred cceeeeecccccccccccccccccccccceecchhhhhhhhHhhhhcc--ccchhhhhhcccccceecccccccccceeE
Confidence 9999999999999998886 4888999999999999999999999986 234799999999999999999999999999
Q ss_pred EeeCCCCCChHHHHHHHHHHHHHhhc
Q 003511 323 ATISPVDSQYHHTLNTLKYADRAKKI 348 (814)
Q Consensus 323 atISPs~~~~eETlsTLrfA~Rak~I 348 (814)
+||+|...+++||++||+||++||+|
T Consensus 310 ~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 310 VCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp EEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred EEcCCccccHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999987
No 26
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.3e-69 Score=593.89 Aligned_cols=328 Identities=39% Similarity=0.637 Sum_probs=295.3
Q ss_pred CCCceEEEEEeCCCCCCcC---CCCeEEEeCCcEEEEECCCCCchhhhhccccCCcceeeeeeecCCCCCcHHHHHHHHh
Q 003511 11 KSTTLTVAIKCRPLTEREQ---GRDIVRVKHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGPGCTNLDVYTACIS 87 (814)
Q Consensus 11 ~~~~IkV~VRvRPl~~~E~---~~~~v~v~~~~~Vvv~dp~~~~~~~~~~~~~~~~k~F~FD~VF~~~atQeeVy~~~v~ 87 (814)
....|.|+||-||++.+|. .-++|.|+.+..++|+.|....+....+.+ +.|.||++||+.++++.||+.+++
T Consensus 206 ~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn----~~F~FDyaFDe~~sNe~VYrfTa~ 281 (676)
T KOG0246|consen 206 NEHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLEN----QKFRFDYAFDESASNELVYRFTAK 281 (676)
T ss_pred ccceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhh----ceEEEeeecccccchHHHHHHhhh
Confidence 4478999999999999995 457899988888999999887775544443 689999999999999999999999
Q ss_pred hhHhhhccCcceEEEeeccCCCCcceeeccCCC------CCCchhhhHHHHHHHHhhcC-CCCeEEEEEEEEEEecceee
Q 003511 88 SVISGVVQGLNATVFAYGSTGSGKTYTMVGTKS------DPGLMVLSLHTIFDLIKKDK-NSDEFEVSCSYLEVYNEVIY 160 (814)
Q Consensus 88 plV~~vl~GyN~tIfAYGqTGSGKTyTM~G~~~------~~GIIpral~~LF~~i~~~~-~~~~f~VsvSylEIYnE~I~ 160 (814)
|||..+|+|--+|+||||||||||||||-|.-. ..||..++.+|+|..+.... ....+.|.|||||||+.+||
T Consensus 282 PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvf 361 (676)
T KOG0246|consen 282 PLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVY 361 (676)
T ss_pred HHHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchh
Confidence 999999999999999999999999999988643 35999999999999987522 23478999999999999999
Q ss_pred eccccccCcceeeecCCCCeeecCeEEEEecChHHHHHHHHhhhhcCCCccccCCCCCCCCeEEEEEEEEEEeccccCCc
Q 003511 161 DLLEKSSAHLELREDPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYCNQ 240 (814)
Q Consensus 161 DLL~~~~~~L~ired~~~g~~V~gLtev~V~S~ee~~~lL~~G~~~R~~~~T~~N~~SSRSHaIftI~V~~~~~~~~~~~ 240 (814)
|||+. ...|.+.||.+..+.|.||++..|.+.+|++.+|+.|++.|+++.|..|..||||||||+|.+.... ..
T Consensus 362 DLL~~-k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~-----~~ 435 (676)
T KOG0246|consen 362 DLLND-KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG-----EF 435 (676)
T ss_pred hhhcc-ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC-----cc
Confidence 99997 6789999999999999999999999999999999999999999999999999999999999997532 24
Q ss_pred eeEEEEEEEEcCCCccccccc-CcchhhHHHHHhhHhHHHHHHHHHHhcCCCCCCCcccccccchhhhhhcccCCC-Ccc
Q 003511 241 VMRGKLSLVDLAGSERASEAN-SGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTRILKDGLSG-NSQ 318 (814)
Q Consensus 241 ~~~SkL~fVDLAGSER~~~t~-~~g~rlkE~~~INkSL~aLg~VI~aLs~~~k~~~~hIPYRdSKLTrLLkdsLGG-nsk 318 (814)
..+||+.||||||+||...|. ++.++..||+.||+||+||..||.||... ..|+|||.||||.+|+|||-| |++
T Consensus 436 k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~n----k~H~PFR~SKLTqVLRDSFIGenSr 511 (676)
T KOG0246|consen 436 KLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRN----KSHLPFRGSKLTQVLRDSFIGENSR 511 (676)
T ss_pred eeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCC----CCCCCchhhhHHHHHHHhhcCCCCc
Confidence 678999999999999988764 56677889999999999999999999764 369999999999999999988 999
Q ss_pred eeEEEeeCCCCCChHHHHHHHHHHHHHhhccccc
Q 003511 319 TVMVATISPVDSQYHHTLNTLKYADRAKKIKTHI 352 (814)
Q Consensus 319 T~mIatISPs~~~~eETlsTLrfA~Rak~Ikn~~ 352 (814)
||||+||||.....|.||+|||||+|+|......
T Consensus 512 TcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~ 545 (676)
T KOG0246|consen 512 TCMIATISPGISSCEHTLNTLRYADRVKELSVDG 545 (676)
T ss_pred eEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999999999986443
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-66 Score=603.24 Aligned_cols=337 Identities=41% Similarity=0.618 Sum_probs=293.0
Q ss_pred eCCCCCCcCCC---CeEEE-eCCcEEEEECCCCCchhhhhccccCCcceeeeeeecCCCCCcHHHHHHHHhhhHhhhccC
Q 003511 21 CRPLTEREQGR---DIVRV-KHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGPGCTNLDVYTACISSVISGVVQG 96 (814)
Q Consensus 21 vRPl~~~E~~~---~~v~v-~~~~~Vvv~dp~~~~~~~~~~~~~~~~k~F~FD~VF~~~atQeeVy~~~v~plV~~vl~G 96 (814)
|||+...|..+ .|+.+ +...+|++. ...+|+||+||+....|.++|+.++.|+++.+++|
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig----------------~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~g 64 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIG----------------KDASFTYDKVFLDLESQKEVYESCVRPLREKLFAG 64 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeec----------------CCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhh
Confidence 69998888532 34443 234445443 25789999999999999999999999999999999
Q ss_pred cceEEEeeccCCCCcceeeccC----CCCCCchhhhHHHHHHHHhhcCCCCeEEEEEEEEEEecceeeecccccc--Ccc
Q 003511 97 LNATVFAYGSTGSGKTYTMVGT----KSDPGLMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEKSS--AHL 170 (814)
Q Consensus 97 yN~tIfAYGqTGSGKTyTM~G~----~~~~GIIpral~~LF~~i~~~~~~~~f~VsvSylEIYnE~I~DLL~~~~--~~L 170 (814)
||+||+|||||||||||||.+. ..+.|+|||++.++|..+..... ..|.|.|||+|||+|.|+|||.+.. ..+
T Consensus 65 ynatvlaygQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~~~~~i 143 (913)
T KOG0244|consen 65 YNATVLAYGQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSRLKANI 143 (913)
T ss_pred hcceeeeecccCCCceeecccccccccccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhhhhhce
Confidence 9999999999999999999876 23459999999999999988664 7899999999999999999998543 357
Q ss_pred eeeecCCCCeeecCeEEEEecChHHHHHHHHhhhhcCCCccccCCCCCCCCeEEEEEEEEEEeccccCCceeEEEEEEEE
Q 003511 171 ELREDPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYCNQVMRGKLSLVD 250 (814)
Q Consensus 171 ~ired~~~g~~V~gLtev~V~S~ee~~~lL~~G~~~R~~~~T~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~SkL~fVD 250 (814)
.+++ +.+++.+.|++++.|.+..+++..|..|...|++++|+||..|||||+||+|.++++.... .....++||+|||
T Consensus 144 ~~~e-~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~-~~s~~~sKlhlVD 221 (913)
T KOG0244|consen 144 KLRE-PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLS-KRSSFCSKLHLVD 221 (913)
T ss_pred eccc-cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhh-ccchhhhhhheee
Confidence 7777 7888999999999999999999999999999999999999999999999999998755433 2345679999999
Q ss_pred cCCCcccccccCcchhhHHHHHhhHhHHHHHHHHHHhcCCCCCCCcccccccchhhhhhcccCCCCcceeEEEeeCCCCC
Q 003511 251 LAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDS 330 (814)
Q Consensus 251 LAGSER~~~t~~~g~rlkE~~~INkSL~aLg~VI~aLs~~~k~~~~hIPYRdSKLTrLLkdsLGGnskT~mIatISPs~~ 330 (814)
||||||.++|++.|.|++||.+||.+|++|||||+||.+..+ ..|||||||||||||+|+||||+.|+||+||||+..
T Consensus 222 LAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk--~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpads 299 (913)
T KOG0244|consen 222 LAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKK--GGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADS 299 (913)
T ss_pred ccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhc--CCcccchHHHHHHHHHHHhcCCcceeeeeecChhhh
Confidence 999999999999999999999999999999999999998665 579999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhhcccccccccccccccchHHHHHHHHHHHHHH
Q 003511 331 QYHHTLNTLKYADRAKKIKTHIQKNIGSIDTHVSDYQRMIDNLQIEVC 378 (814)
Q Consensus 331 ~~eETlsTLrfA~Rak~Ikn~~~~N~~~~~~~~~~~~~~I~~L~~Ei~ 378 (814)
+++||++||+||.||++|+|+|.+|..+...++..++..|+.|+.++.
T Consensus 300 n~~EtlnTl~ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell 347 (913)
T KOG0244|consen 300 NAQETLNTLRYADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELL 347 (913)
T ss_pred hhhhHHHHHHHhhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999985544444444444444444443
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.4e-62 Score=569.22 Aligned_cols=317 Identities=46% Similarity=0.720 Sum_probs=288.2
Q ss_pred cceeeeeeecCCCCCcHHHHHHHHhhhHhhhccCcceEEEeeccCCCCcceeeccCCCCCCchhhhHHHHHHHHhhcCCC
Q 003511 63 EKNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTIFDLIKKDKNS 142 (814)
Q Consensus 63 ~k~F~FD~VF~~~atQeeVy~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM~G~~~~~GIIpral~~LF~~i~~~~~~ 142 (814)
..+|.||+||++.++|++||+.++.|+++.++.|||+||||||||||||||||.|...++||||+++.+||+.+......
T Consensus 55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~ 134 (568)
T COG5059 55 EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMT 134 (568)
T ss_pred ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred CeEEEEEEEEEEecceeeeccccccCcceeeecCCCCeeecCeEEEEecChHHHHHHHHhhhhcCCCccccCCCCCCCCe
Q 003511 143 DEFEVSCSYLEVYNEVIYDLLEKSSAHLELREDPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSH 222 (814)
Q Consensus 143 ~~f~VsvSylEIYnE~I~DLL~~~~~~L~ired~~~g~~V~gLtev~V~S~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH 222 (814)
..|.|.|||+|||||+++|||.+....+.++++...+++|.|++++.+.+.+|++.+|++|..+|+++.|.+|..|||||
T Consensus 135 ~~~~v~is~lEiYnEk~~DLl~~~~~~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRsh 214 (568)
T COG5059 135 KDFAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSH 214 (568)
T ss_pred cceeeEeehhHHHhhHHHhhccCccccccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccce
Confidence 78999999999999999999998877788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEEEeccccCCceeEEEEEEEEcCCCcccccccCcchhhHHHHHhhHhHHHHHHHHHHhcCCCCCCCccccccc
Q 003511 223 AVLEITVKRRQKTEYCNQVMRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRN 302 (814)
Q Consensus 223 aIftI~V~~~~~~~~~~~~~~SkL~fVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~VI~aLs~~~k~~~~hIPYRd 302 (814)
+||+++|.+..... +....++|+||||||||++..++..+.+++|+..||+||.+||+||++|.+. ++..|||||+
T Consensus 215 si~~i~~~~~~~~~--~~~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~--~~~~~ipyRe 290 (568)
T COG5059 215 SIFQIELASKNKVS--GTSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDK--KKSGHIPYRE 290 (568)
T ss_pred EEEEEEEEEeccCc--cceecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhcc--ccCCccchhh
Confidence 99999999887654 3333479999999999999999999999999999999999999999999874 3457999999
Q ss_pred chhhhhhcccCCCCcceeEEEeeCCCCCChHHHHHHHHHHHHHhhccccccccc-ccccccchHHHHHHHHHHHHHHHHH
Q 003511 303 SKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKIKTHIQKNI-GSIDTHVSDYQRMIDNLQIEVCRLK 381 (814)
Q Consensus 303 SKLTrLLkdsLGGnskT~mIatISPs~~~~eETlsTLrfA~Rak~Ikn~~~~N~-~~~~~~~~~~~~~I~~L~~Ei~~Lk 381 (814)
|||||||+++|||+++|+|||||+|+..+++||.+||+||.||+.|++.+..|. .....++..+...+...+.++..++
T Consensus 291 skLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 370 (568)
T COG5059 291 SKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIEILV 370 (568)
T ss_pred hHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhhhhHH
Confidence 999999999999999999999999999999999999999999999999999885 2223344444445555555555554
Q ss_pred HH
Q 003511 382 KE 383 (814)
Q Consensus 382 ~e 383 (814)
..
T Consensus 371 ~~ 372 (568)
T COG5059 371 FR 372 (568)
T ss_pred HH
Confidence 44
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=8.4e-49 Score=395.73 Aligned_cols=178 Identities=44% Similarity=0.698 Sum_probs=167.5
Q ss_pred HHHHHHhhhHhhhccCcceEEEeeccCCCCcceeeccCCCCCCchhhhHHHHHHHHhhcCCCCeEEEEEEEEEEecceee
Q 003511 81 VYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIY 160 (814)
Q Consensus 81 Vy~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM~G~~~~~GIIpral~~LF~~i~~~~~~~~f~VsvSylEIYnE~I~ 160 (814)
||+.++ |+|+.+++|||+||||||||||||||||+|+..++||+||++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~----------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD----------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH-----------------------------
Confidence 999999 99999999999999999999999999999999999999999988
Q ss_pred eccccccCcceeeecCCCCeeecCeEEEEecChHHHHHHHHhhhhcCCCccccCCCCCCCCeEEEEEEEEEEecccc-CC
Q 003511 161 DLLEKSSAHLELREDPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEY-CN 239 (814)
Q Consensus 161 DLL~~~~~~L~ired~~~g~~V~gLtev~V~S~ee~~~lL~~G~~~R~~~~T~~N~~SSRSHaIftI~V~~~~~~~~-~~ 239 (814)
+++++..|.++|.++.|.+|..|||||+||+|+|.+...... ..
T Consensus 58 -----------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~~~ 102 (186)
T cd01363 58 -----------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATE 102 (186)
T ss_pred -----------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCCCcc
Confidence 789999999999999999999999999999999998765432 24
Q ss_pred ceeEEEEEEEEcCCCcccccccCcchhhHHHHHhhHhHHHHHHHHHHhcCCCCCCCcccccccchhhhhhcccCCCCcce
Q 003511 240 QVMRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALGKPQKKGLAYVPYRNSKLTRILKDGLSGNSQT 319 (814)
Q Consensus 240 ~~~~SkL~fVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~VI~aLs~~~k~~~~hIPYRdSKLTrLLkdsLGGnskT 319 (814)
....++|+||||||||+..+++..+.+++|++.||+||.+|++||.+|++.+ .||||||||||+||+|+|||||+|
T Consensus 103 ~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~----~~vpyr~SkLT~lL~~~L~g~~~t 178 (186)
T cd01363 103 QPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERD----SHVPYRESKLTRLLQDSLGGNSRT 178 (186)
T ss_pred ceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCC----CCCCCcccHHHHHHHHhcCCCCeE
Confidence 5678999999999999999999999999999999999999999999998754 589999999999999999999999
Q ss_pred eEEEeeCC
Q 003511 320 VMVATISP 327 (814)
Q Consensus 320 ~mIatISP 327 (814)
+||+||||
T Consensus 179 ~~i~~vsP 186 (186)
T cd01363 179 LMVACISP 186 (186)
T ss_pred EEEEEeCc
Confidence 99999998
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=97.17 E-value=1.3e-06 Score=103.17 Aligned_cols=206 Identities=25% Similarity=0.278 Sum_probs=129.6
Q ss_pred cceeeeeeecCCCCCcHHHHHHHHhhhHhhhccCcceEEEeeccCCCCcceeeccCCCCCCchhhhHHHHHHHHhhcCC-
Q 003511 63 EKNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTIFDLIKKDKN- 141 (814)
Q Consensus 63 ~k~F~FD~VF~~~atQeeVy~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM~G~~~~~GIIpral~~LF~~i~~~~~- 141 (814)
...|.||.+|.....+..++.. ....++..++| +++||++++++++||.- ...++..-.+...|..+.....
T Consensus 352 ~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~ 424 (568)
T COG5059 352 IEEIKFDLSEDRSEIEILVFRE-QSQLSQSSLSG----IFAYMQSLKKETETLKS--RIDLIMKSIISGTFERKKLLKEE 424 (568)
T ss_pred HHHHHhhhhhhhhhhhhHHHHH-HHhhhhhhhhh----HHHHHhhhhhhhhcccc--hhhhhhhhhhhhhhhhhhhhhhh
Confidence 3578999999999998888854 56667777777 89999999999999942 2345555555677766654321
Q ss_pred CCeEEEEEEEEEEecceeeeccccccC---c-----ceeeecCCCCeeecCeEEEEecChHHHHHHHHhhhhcCCCcccc
Q 003511 142 SDEFEVSCSYLEVYNEVIYDLLEKSSA---H-----LELREDPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTE 213 (814)
Q Consensus 142 ~~~f~VsvSylEIYnE~I~DLL~~~~~---~-----L~ired~~~g~~V~gLtev~V~S~ee~~~lL~~G~~~R~~~~T~ 213 (814)
...+...+-++++|-....++...... . ..++.+. +. +.........+..... .....+..+.+.
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 497 (568)
T COG5059 425 GWKYKSTLQFLRIEIDRLLLLREEELSKKKTKIHKLNKLRHDL-----SS-LLSSIPEETSDRVESE-KASKLRSSASTK 497 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-----HH-hhhhcchhhhhhhhhh-hhccchhhcccc
Confidence 112222233333431111111111100 0 0111110 00 0001111111111111 567778889999
Q ss_pred CCCCCCCCeEEEEEEEEEEeccccCCceeEEEEEEEEcCCCcccccccCcchhhHHHHHhhHhHHHHHHHHHHhc
Q 003511 214 ANGTSSRSHAVLEITVKRRQKTEYCNQVMRGKLSLVDLAGSERASEANSGGQKLRDGANINRSLLALANCINALG 288 (814)
Q Consensus 214 ~N~~SSRSHaIftI~V~~~~~~~~~~~~~~SkL~fVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~VI~aLs 288 (814)
.|..++++|.+|........... .... ++.|||||+||. -....|.++++...+|++|..++.+|.++.
T Consensus 498 ~n~~~~~~~~~~~~~~~~~~~~~--~~~~---~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 498 LNLRSSRSHSKFRDHLNGSNSST--KELS---LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred hhhhhcccchhhhhcccchhhhh--HHHH---hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 99999999999987765433222 1111 799999999999 888999999999999999999999998874
No 31
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.05 E-value=0.3 Score=59.63 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhccCC
Q 003511 369 MIDNLQIEVCRLKKELADKDS 389 (814)
Q Consensus 369 ~I~~L~~Ei~~Lk~eL~~~~~ 389 (814)
.+..|+.|+++||.+|...+.
T Consensus 419 a~~rLE~dvkkLraeLq~~Rq 439 (697)
T PF09726_consen 419 AISRLEADVKKLRAELQSSRQ 439 (697)
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 456788888888888876543
No 32
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.51 E-value=0.31 Score=59.48 Aligned_cols=42 Identities=17% Similarity=0.284 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Q 003511 529 ANIELQFEMAMRDQVIHNQRAAQRQLWNLLMRSGVDEKHLLDLAA 573 (814)
Q Consensus 529 ~~~elq~e~~~r~~~I~~~r~~~~~lW~~l~~~~~~~~~~~~~~~ 573 (814)
...|++.+...-...+..+-.-+-++.++.+.+ ++++.|+..
T Consensus 505 ~~kel~~r~~aaqet~yDrdqTI~KfRelva~L---qdqlqe~~d 546 (1243)
T KOG0971|consen 505 ARKELQKRVEAAQETVYDRDQTIKKFRELVAHL---QDQLQELTD 546 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 344555555555555666666666777777777 777777665
No 33
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.44 E-value=0.86 Score=55.85 Aligned_cols=38 Identities=24% Similarity=0.096 Sum_probs=22.6
Q ss_pred HhhhhhHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhc
Q 003511 524 RILGMANIELQFEMAMRDQVIHNQRAAQRQLWNLLMRS 561 (814)
Q Consensus 524 ~~l~~~~~elq~e~~~r~~~I~~~r~~~~~lW~~l~~~ 561 (814)
|++.....--|.-+.=+++.|-..|+..+.|=..|--+
T Consensus 507 kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~ 544 (1243)
T KOG0971|consen 507 KELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQEL 544 (1243)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444445557777777777777666666554
No 34
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.31 E-value=1 Score=55.20 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 480 DEAGINYQKEIEENESRRCELQKMID 505 (814)
Q Consensus 480 ~e~~~~~q~eie~~e~~~~~Le~~l~ 505 (814)
+.++..++.++...+++...||.++.
T Consensus 551 E~E~~~lr~elk~kee~~~~~e~~~~ 576 (697)
T PF09726_consen 551 ESELKKLRRELKQKEEQIRELESELQ 576 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666666554
No 35
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.14 E-value=1.7 Score=48.36 Aligned_cols=213 Identities=16% Similarity=0.175 Sum_probs=116.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhccCC------CCCCCcchhhhhhHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 363 VSDYQRMIDNLQIEVCRLKKELADKDS------QPSVKPAEKAADDEL-SWLNVLSLEISENAQERINLQNALFELEETN 435 (814)
Q Consensus 363 ~~~~~~~I~~L~~Ei~~Lk~eL~~~~~------~~~~~~~~~~~~~e~-~~l~~l~~~~~e~~~e~~~lq~~l~elee~~ 435 (814)
-+.|+.+++.|+.....|++....... .....|.. ....+ ..+...+++......+...|++.+.|++.++
T Consensus 25 rDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~--~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~ 102 (319)
T PF09789_consen 25 RDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEK--ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDI 102 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCccc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 357788888888888888876654331 11122211 00111 1122222222233334445555666666555
Q ss_pred HHHHHHHHHHHHHHHHH---HHcccchHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003511 436 LRIRAELQYLDDAIAKK---QAIGKDDAV---VEALKSRRQIILDNIRENDEAGINYQKEIEENESRRCELQKMIDEAVS 509 (814)
Q Consensus 436 ~~~~~e~~~l~~~~~~~---~~~~k~~~~---~e~l~~~~q~l~~~~~~~~e~~~~~q~eie~~e~~~~~Le~~l~~~i~ 509 (814)
.-+++.+.......... .......+. .|.+..+...+...++-..+...++..+-+.+..+...|-++|..++.
T Consensus 103 KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~ 182 (319)
T PF09789_consen 103 KLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILN 182 (319)
T ss_pred HHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 55555443221110000 000111112 233344444444455555555566677777888888899999998888
Q ss_pred ccchhH--HHHHHHHHHhhhhhHHHHHHHHHHhHhHHHHHHHHHHH-HHHHHHhcc----------cchHHHHHHHHhcC
Q 003511 510 SNGNKT--YLRILSQYRILGMANIELQFEMAMRDQVIHNQRAAQRQ-LWNLLMRSG----------VDEKHLLDLAAKHG 576 (814)
Q Consensus 510 ~~~~~~--~~~lL~k~~~l~~~~~elq~e~~~r~~~I~~~r~~~~~-lW~~l~~~~----------~~~~~~~~~~~~~~ 576 (814)
.++.+- +=.++...+-|-.....+|.|..+-++.|..|+.+..+ --.-+..+| ++.++|.++.....
T Consensus 183 g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~k~~~~~~k~~~~~~~~~~~v~s~kQv~~ll~~~~ 262 (319)
T PF09789_consen 183 GDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALERKRKKGIIKLGNSASSNLTGVMSAKQVKELLESES 262 (319)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCCcccccccHHHHHHHHhccc
Confidence 766542 33556666666667777888888888889988887763 222233333 67788888776654
Q ss_pred c
Q 003511 577 I 577 (814)
Q Consensus 577 ~ 577 (814)
.
T Consensus 263 ~ 263 (319)
T PF09789_consen 263 N 263 (319)
T ss_pred c
Confidence 3
No 36
>PRK11637 AmiB activator; Provisional
Probab=96.10 E-value=3.8 Score=47.26 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=11.7
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 003511 532 ELQFEMAMRDQVIHNQRAAQRQLWNLLM 559 (814)
Q Consensus 532 elq~e~~~r~~~I~~~r~~~~~lW~~l~ 559 (814)
.|..+.......|.+++....++=..|.
T Consensus 223 ~L~~~~~~~~~~l~~l~~~~~~L~~~I~ 250 (428)
T PRK11637 223 GLESSLQKDQQQLSELRANESRLRDSIA 250 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444
No 37
>PRK09039 hypothetical protein; Validated
Probab=95.96 E-value=1.8 Score=48.75 Aligned_cols=37 Identities=8% Similarity=-0.004 Sum_probs=27.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003511 474 DNIRENDEAGINYQKEIEENESRRCELQKMIDEAVSS 510 (814)
Q Consensus 474 ~~~~~~~e~~~~~q~eie~~e~~~~~Le~~l~~~i~~ 510 (814)
..+.+..-.+..++.+|+.++.+...|+..|..+...
T Consensus 130 ~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~ 166 (343)
T PRK09039 130 QVSARALAQVELLNQQIAALRRQLAALEAALDASEKR 166 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444566778888999999888888888866654
No 38
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.74 E-value=3.7 Score=52.45 Aligned_cols=13 Identities=38% Similarity=0.498 Sum_probs=11.1
Q ss_pred eeccCCCCcceee
Q 003511 103 AYGSTGSGKTYTM 115 (814)
Q Consensus 103 AYGqTGSGKTyTM 115 (814)
-+|++|||||..|
T Consensus 28 i~G~NGsGKS~il 40 (1164)
T TIGR02169 28 ISGPNGSGKSNIG 40 (1164)
T ss_pred EECCCCCCHHHHH
Confidence 4799999999865
No 39
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.63 E-value=5.3 Score=45.25 Aligned_cols=57 Identities=26% Similarity=0.235 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHhcCCCCC--CCcccccccchhhhhhcccCCCCcceeEEEeeCCCCCChHHHHHHHHHHH
Q 003511 276 SLLALANCINALGKPQKK--GLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPVDSQYHHTLNTLKYAD 343 (814)
Q Consensus 276 SL~aLg~VI~aLs~~~k~--~~~hIPYRdSKLTrLLkdsLGGnskT~mIatISPs~~~~eETlsTLrfA~ 343 (814)
+.+.||.||..+++.-.+ +..|. +|+. |- .-.|.+|++|-...---.-||..|=.++
T Consensus 8 ~vlvLgGVIA~~gD~ig~kvGkarL--------rlF~--LR-PkqTAvlvtvltG~liSA~tLailf~~~ 66 (499)
T COG4372 8 FVLVLGGVIAYAGDTIGKKVGKARL--------RLFG--LR-PKQTAVLVTVLTGMLISAATLAILFLLN 66 (499)
T ss_pred HHHHHHhHHHHHhhHHHhhhhHHHH--------hHhc--cC-cccceeehhhhhcchhhHHHHHHHHHhh
Confidence 567899999999773211 11221 1110 11 3456777776544333345666554443
No 40
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.52 E-value=4.6 Score=51.62 Aligned_cols=11 Identities=18% Similarity=0.292 Sum_probs=7.1
Q ss_pred ChHHHHHHHHh
Q 003511 192 SADKILELLNL 202 (814)
Q Consensus 192 S~ee~~~lL~~ 202 (814)
+..++..++..
T Consensus 118 ~~~~~~~~l~~ 128 (1164)
T TIGR02169 118 RLSEIHDFLAA 128 (1164)
T ss_pred cHHHHHHHHHH
Confidence 56777776653
No 41
>PRK11637 AmiB activator; Provisional
Probab=95.51 E-value=6.4 Score=45.43 Aligned_cols=22 Identities=14% Similarity=-0.105 Sum_probs=10.6
Q ss_pred hhhhhHHHHHHHHHHhHhHHHH
Q 003511 525 ILGMANIELQFEMAMRDQVIHN 546 (814)
Q Consensus 525 ~l~~~~~elq~e~~~r~~~I~~ 546 (814)
..+....+|+.+..-....|++
T Consensus 230 ~~~~~l~~l~~~~~~L~~~I~~ 251 (428)
T PRK11637 230 KDQQQLSELRANESRLRDSIAR 251 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555554444445544
No 42
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.32 E-value=2.3 Score=51.58 Aligned_cols=94 Identities=14% Similarity=0.199 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----chhHHH------------HHHHHHH
Q 003511 461 VVEALKSRRQIILDNIRENDEAGINYQKEIEENESRRCELQKMIDEAVSSN----GNKTYL------------RILSQYR 524 (814)
Q Consensus 461 ~~e~l~~~~q~l~~~~~~~~e~~~~~q~eie~~e~~~~~Le~~l~~~i~~~----~~~~~~------------~lL~k~~ 524 (814)
.++.+...++.++.++.+....+.++|..+..+--+...|...|.+.-... .++..| +|-++..
T Consensus 473 ~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqld 552 (1118)
T KOG1029|consen 473 EIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLD 552 (1118)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555554444211111 111111 3344444
Q ss_pred hhhhhHHHHHHHHHHhHhHHHHHHHHHHHH
Q 003511 525 ILGMANIELQFEMAMRDQVIHNQRAAQRQL 554 (814)
Q Consensus 525 ~l~~~~~elq~e~~~r~~~I~~~r~~~~~l 554 (814)
+++.+.+....+++++++-+.++|+....+
T Consensus 553 elskE~esk~~eidi~n~qlkelk~~~~~q 582 (1118)
T KOG1029|consen 553 ELSKETESKLNEIDIFNNQLKELKEDVNSQ 582 (1118)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 555555556667788888877777654443
No 43
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.28 E-value=4.3 Score=49.52 Aligned_cols=87 Identities=23% Similarity=0.264 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCC-CCCCcch-hhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 365 DYQRMIDNLQIEVCRLKKELADKDSQ-PSVKPAE-KAADDELSWLNVLSLEISENAQERINLQNALFELEETNLRIRAEL 442 (814)
Q Consensus 365 ~~~~~I~~L~~Ei~~Lk~eL~~~~~~-~~~~~~~-~~~~~e~~~l~~l~~~~~e~~~e~~~lq~~l~elee~~~~~~~e~ 442 (814)
+.+..|.+|+.+...|.+-+.+.... .++.... +...-+. -..++.......+....++.++..|+..+.+++.+.
T Consensus 45 ~aeniiqdlrserdalhe~lvdkaglneSviie~sk~vstqe--triyRrdv~llEddlk~~~sQiriLQn~c~~lE~ek 122 (1265)
T KOG0976|consen 45 DAENIIQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQE--TRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEK 122 (1265)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHH--HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888877777666543321 1211110 0000000 111222333333444456666666666677777777
Q ss_pred HHHHHHHHHHH
Q 003511 443 QYLDDAIAKKQ 453 (814)
Q Consensus 443 ~~l~~~~~~~~ 453 (814)
+.|++.++..+
T Consensus 123 q~lQ~ti~~~q 133 (1265)
T KOG0976|consen 123 QKLQDTIQGAQ 133 (1265)
T ss_pred HHHHHHHHHHH
Confidence 77766665433
No 44
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.21 E-value=6.2 Score=51.35 Aligned_cols=75 Identities=17% Similarity=0.149 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhhHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhc
Q 003511 482 AGINYQKEIEENESRRCELQKMIDEAVSSNGNKTYLRILSQYRILGMANIELQFEMAMRDQVIHNQRAAQRQLWNLLMRS 561 (814)
Q Consensus 482 ~~~~~q~eie~~e~~~~~Le~~l~~~i~~~~~~~~~~lL~k~~~l~~~~~elq~e~~~r~~~I~~~r~~~~~lW~~l~~~ 561 (814)
.+..++.+++.++.+...+...+..+. +....+..+...++....++..++......+++.++....+|..+..+
T Consensus 398 ~l~~l~~~i~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 472 (1163)
T COG1196 398 ELEELKREIESLEERLERLSERLEDLK-----EELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAEL 472 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443333 223344444444455556666666666666666666666666665555
No 45
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=95.11 E-value=0.036 Score=64.48 Aligned_cols=92 Identities=26% Similarity=0.450 Sum_probs=64.2
Q ss_pred ceeeeeeecCCCCCcHHHHHHHHhhhHhhhccCcceEEEeeccCCCCcceeeccC---CCCCCchh----hhHHHHHHHH
Q 003511 64 KNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGT---KSDPGLMV----LSLHTIFDLI 136 (814)
Q Consensus 64 k~F~FD~VF~~~atQeeVy~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM~G~---~~~~GIIp----ral~~LF~~i 136 (814)
..|..-.-|.|.-+|- ..+..+|+++-+|.-.-+ -.|.|||||||||--- -.-|-+|. -...+||..+
T Consensus 3 ~~F~l~s~f~PaGDQP----~AI~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Ef 77 (663)
T COG0556 3 KPFKLHSPFKPAGDQP----EAIAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEF 77 (663)
T ss_pred CceEeccCCCCCCCcH----HHHHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHH
Confidence 3566667788888875 457778888878876554 4599999999999541 12233221 1356788888
Q ss_pred hhcCCCCeEEEEEEEEEEecceee
Q 003511 137 KKDKNSDEFEVSCSYLEVYNEVIY 160 (814)
Q Consensus 137 ~~~~~~~~f~VsvSylEIYnE~I~ 160 (814)
++--....+...|||+..|.-..|
T Consensus 78 k~fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 78 KEFFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HHhCcCcceEEEeeeccccCcccc
Confidence 776666678888999999976543
No 46
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.07 E-value=3 Score=52.64 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccC
Q 003511 367 QRMIDNLQIEVCRLKKELADKD 388 (814)
Q Consensus 367 ~~~I~~L~~Ei~~Lk~eL~~~~ 388 (814)
.+-+++|++-|..+++-|....
T Consensus 1467 ~~s~~el~~Li~~v~~Flt~~~ 1488 (1758)
T KOG0994|consen 1467 EESNRELRNLIQQVRDFLTQPD 1488 (1758)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC
Confidence 3344555555555555555443
No 47
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.95 E-value=8 Score=46.04 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhHhHHHHHHH
Q 003511 530 NIELQFEMAMRDQVIHNQRA 549 (814)
Q Consensus 530 ~~elq~e~~~r~~~I~~~r~ 549 (814)
..||-.-.+.||..+++...
T Consensus 310 ~~EL~~~~~~RDrt~aeLh~ 329 (546)
T PF07888_consen 310 RKELSDAVNVRDRTMAELHQ 329 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455556778888888876
No 48
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.79 E-value=2.1 Score=47.39 Aligned_cols=26 Identities=38% Similarity=0.420 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 422 INLQNALFELEETNLRIRAELQYLDD 447 (814)
Q Consensus 422 ~~lq~~l~elee~~~~~~~e~~~l~~ 447 (814)
..|++++..+|++|..++.+..+|..
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~ 188 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKT 188 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34778888899999999999887753
No 49
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=94.34 E-value=15 Score=47.00 Aligned_cols=18 Identities=11% Similarity=0.067 Sum_probs=10.9
Q ss_pred CccceecccccccccCCC
Q 003511 664 PSTYLKLRNCSEQWIDST 681 (814)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~ 681 (814)
..+||.|....+.+.+|.
T Consensus 1056 ~~~~~~~~~~~~~~~~~~ 1073 (1179)
T TIGR02168 1056 GEAELRLTDPEDLLEAGI 1073 (1179)
T ss_pred CeEEEEeCCCCcccccCc
Confidence 567888875544454443
No 50
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.30 E-value=9.9 Score=50.14 Aligned_cols=19 Identities=26% Similarity=0.172 Sum_probs=11.1
Q ss_pred HHHHHhcccchHHHHHHHHhcC
Q 003511 555 WNLLMRSGVDEKHLLDLAAKHG 576 (814)
Q Consensus 555 W~~l~~~~~~~~~~~~~~~~~~ 576 (814)
++.+... +.+|.++..+.+
T Consensus 1027 ~~~l~el---~~eI~~l~~~~~ 1045 (1311)
T TIGR00606 1027 ENELKEV---EEELKQHLKEMG 1045 (1311)
T ss_pred HHHHHHH---HHHHHHHHHHHh
Confidence 6666666 566665555444
No 51
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.27 E-value=18 Score=44.93 Aligned_cols=9 Identities=33% Similarity=0.597 Sum_probs=3.8
Q ss_pred CcceEEEee
Q 003511 96 GLNATVFAY 104 (814)
Q Consensus 96 GyN~tIfAY 104 (814)
||..||-+|
T Consensus 101 ~Yg~lI~~Y 109 (980)
T KOG0980|consen 101 GYGPLIRAY 109 (980)
T ss_pred cchHHHHHH
Confidence 444444333
No 52
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.12 E-value=4.1 Score=42.39 Aligned_cols=68 Identities=13% Similarity=0.094 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhhHHHHHHHHHHhHhHHHHHHH
Q 003511 481 EAGINYQKEIEENESRRCELQKMIDEAVSSNGNKTYLRILSQYRILGMANIELQFEMAMRDQVIHNQRA 549 (814)
Q Consensus 481 e~~~~~q~eie~~e~~~~~Le~~l~~~i~~~~~~~~~~lL~k~~~l~~~~~elq~e~~~r~~~I~~~r~ 549 (814)
..+..++..++..+.+...|+..+.-.. ..-.+.+..--.+.+.+......++.++..-.+.|.++-+
T Consensus 125 ~kL~~~~~~l~~~~~ki~~Lek~leL~~-k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer 192 (194)
T PF15619_consen 125 RKLSQLEQKLQEKEKKIQELEKQLELEN-KSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKER 192 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555566666666666666655322 2334555555666777777888888888888888877643
No 53
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.09 E-value=14 Score=48.27 Aligned_cols=40 Identities=15% Similarity=0.085 Sum_probs=21.4
Q ss_pred CccceecccccccccCCCCcccccCCCCCcccccccccccc
Q 003511 664 PSTYLKLRNCSEQWIDSTPGSWFETPGKHPQDFRSSCPEIR 704 (814)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (814)
-.|+|.|....|-...|--- .-..|||..+.+..-|-+=+
T Consensus 1033 G~a~L~l~~~dd~l~~Giei-~a~ppgK~~~~l~~LSGGEK 1072 (1163)
T COG1196 1033 GTAELELTEPDDPLTAGIEI-SARPPGKKLQSLSLLSGGEK 1072 (1163)
T ss_pred CeeEEEeCCCCchhhcCcEE-EEECCCCCccchhhcCCcHH
Confidence 36888888876654444211 12245665665555444433
No 54
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.06 E-value=3.8 Score=48.67 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcc
Q 003511 364 SDYQRMIDNLQIEVCRLKKELADK 387 (814)
Q Consensus 364 ~~~~~~I~~L~~Ei~~Lk~eL~~~ 387 (814)
..++..|..|+.|+..|+..+..+
T Consensus 109 a~~e~ei~kl~~e~~elr~~~~~~ 132 (546)
T KOG0977|consen 109 AKLEIEITKLREELKELRKKLEKA 132 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 455667888888888888877665
No 55
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.00 E-value=11 Score=47.68 Aligned_cols=15 Identities=40% Similarity=0.738 Sum_probs=12.5
Q ss_pred EeeccCCCCcceeec
Q 003511 102 FAYGSTGSGKTYTMV 116 (814)
Q Consensus 102 fAYGqTGSGKTyTM~ 116 (814)
|.-|+.||||+-.|.
T Consensus 66 fI~G~NGSGKSAIlt 80 (1074)
T KOG0250|consen 66 FIVGNNGSGKSAILT 80 (1074)
T ss_pred EeecCCCCcHHHHHH
Confidence 778999999986663
No 56
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.99 E-value=11 Score=40.70 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 411 SLEISENAQERINLQNALFELEETNLRIRAELQYLDDAI 449 (814)
Q Consensus 411 ~~~~~e~~~e~~~lq~~l~elee~~~~~~~e~~~l~~~~ 449 (814)
+.++.........++..+..++.+..++..+++.+...+
T Consensus 37 ~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~ 75 (239)
T COG1579 37 KAELEALNKALEALEIELEDLENQVSQLESEIQEIRERI 75 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444455555566666666666665554433
No 57
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.90 E-value=11 Score=47.69 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=15.4
Q ss_pred CCCCcccchhhhhccccceeccCC
Q 003511 638 GLWDPARTVCREEHRRSYYFLSHD 661 (814)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~ 661 (814)
+-|+.+---|----+..|-.-||-
T Consensus 508 ~KWa~aIE~~L~n~lnaFiv~sh~ 531 (1074)
T KOG0250|consen 508 PKWALAIERCLGNLLNAFIVTSHK 531 (1074)
T ss_pred cHHHHHHHHHHHHhhhhheeCCHh
Confidence 468777777766666666555543
No 58
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.90 E-value=5.7 Score=52.74 Aligned_cols=51 Identities=25% Similarity=0.339 Sum_probs=27.6
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHhc--ccc-hHHHHHHHHhcCceecccc
Q 003511 533 LQFEMAMRDQVIHNQRAAQRQLWNLLMRS--GVD-EKHLLDLAAKHGITIEDWS 583 (814)
Q Consensus 533 lq~e~~~r~~~I~~~r~~~~~lW~~l~~~--~~~-~~~~~~~~~~~~~~~e~~~ 583 (814)
++.++.--++-+++|+.+.+-+-+--+++ .++ ...+-.++.+++-.+|+..
T Consensus 518 ~~~~~~~l~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (1486)
T PRK04863 518 LRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLS 571 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555444444433333 333 5566688888888887763
No 59
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=93.90 E-value=5.4 Score=48.70 Aligned_cols=32 Identities=28% Similarity=0.279 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 003511 528 MANIELQFEMAMRDQVIHNQRAAQRQLWNLLM 559 (814)
Q Consensus 528 ~~~~elq~e~~~r~~~I~~~r~~~~~lW~~l~ 559 (814)
++|.-|...+.-||.=|+..|++-|.|-.-++
T Consensus 522 kEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma 553 (861)
T PF15254_consen 522 KENQILGITLRQRDAEIERLRELTRTLQNSMA 553 (861)
T ss_pred hhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556667677777766665554443
No 60
>PRK03918 chromosome segregation protein; Provisional
Probab=93.82 E-value=20 Score=44.85 Aligned_cols=13 Identities=38% Similarity=0.672 Sum_probs=11.0
Q ss_pred eeccCCCCcceee
Q 003511 103 AYGSTGSGKTYTM 115 (814)
Q Consensus 103 AYGqTGSGKTyTM 115 (814)
-+|++|||||..|
T Consensus 28 i~G~nG~GKStil 40 (880)
T PRK03918 28 IIGQNGSGKSSIL 40 (880)
T ss_pred EEcCCCCCHHHHH
Confidence 6799999998654
No 61
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.75 E-value=16 Score=43.18 Aligned_cols=68 Identities=29% Similarity=0.380 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCcchhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 367 QRMIDNLQIEVCRLKKELADKDSQPSVKPAEKAADDELSWLNVLSLEISENAQERINLQNALFELEETNLRIRAELQYLD 446 (814)
Q Consensus 367 ~~~I~~L~~Ei~~Lk~eL~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~e~~~e~~~lq~~l~elee~~~~~~~e~~~l~ 446 (814)
...++.|+.||++|-.+|.+.... ...+.+.-+ +..++...|++++.+++..-...+.|+..+.
T Consensus 7 eq~ve~lr~eierLT~el~q~t~e-----~~qaAeyGL-----------~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtk 70 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTTEE-----KIQAAEYGL-----------ELLEEKEDLKQQLEELEAEYDLARTELDQTK 70 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999888764310 011111111 1223334455566666665555555555544
Q ss_pred HHHH
Q 003511 447 DAIA 450 (814)
Q Consensus 447 ~~~~ 450 (814)
..+.
T Consensus 71 eal~ 74 (772)
T KOG0999|consen 71 EALG 74 (772)
T ss_pred HHHH
Confidence 4443
No 62
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=93.70 E-value=15 Score=48.19 Aligned_cols=46 Identities=20% Similarity=0.214 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHhcccchHHHHHHH
Q 003511 527 GMANIELQFEMAMRDQVIHN-QRAAQRQLWNLLMRSGVDEKHLLDLA 572 (814)
Q Consensus 527 ~~~~~elq~e~~~r~~~I~~-~r~~~~~lW~~l~~~~~~~~~~~~~~ 572 (814)
+.....++.++.-+.+-+.+ +++....+=+.|++.|++...|.++.
T Consensus 731 d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~ 777 (1201)
T PF12128_consen 731 DEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLK 777 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 33444444444333333333 33444555577888888876666443
No 63
>PRK03918 chromosome segregation protein; Provisional
Probab=93.68 E-value=16 Score=45.78 Aligned_cols=12 Identities=8% Similarity=0.152 Sum_probs=5.4
Q ss_pred cChHHHHHHHHh
Q 003511 191 HSADKILELLNL 202 (814)
Q Consensus 191 ~S~ee~~~lL~~ 202 (814)
.+..++...+..
T Consensus 108 ~~~~~~~~~i~~ 119 (880)
T PRK03918 108 EGDSSVREWVER 119 (880)
T ss_pred ccHHHHHHHHHH
Confidence 344444444443
No 64
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.58 E-value=14 Score=44.03 Aligned_cols=20 Identities=30% Similarity=0.210 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 003511 366 YQRMIDNLQIEVCRLKKELA 385 (814)
Q Consensus 366 ~~~~I~~L~~Ei~~Lk~eL~ 385 (814)
++..++..+.|...|.++..
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~ 160 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENE 160 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666665544
No 65
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.51 E-value=4.6 Score=44.76 Aligned_cols=84 Identities=20% Similarity=0.217 Sum_probs=45.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcchhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 362 HVSDYQRMIDNLQIEVCRLKKELADKDSQPSVKPAEKAADDELSWLNVLSLEISENAQERINLQNALFELEETNLRIRAE 441 (814)
Q Consensus 362 ~~~~~~~~I~~L~~Ei~~Lk~eL~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~e~~~e~~~lq~~l~elee~~~~~~~e 441 (814)
+...+++.++.|+.|+..|+.+-........ ...+.+..-+.....++.++-.+...|...|..-.+.+.+++.+
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~-----~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEE 235 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETD-----TYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEE 235 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh-----hccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999988665432110 11111211233333444444444455555555555556666666
Q ss_pred HHHHHHHHH
Q 003511 442 LQYLDDAIA 450 (814)
Q Consensus 442 ~~~l~~~~~ 450 (814)
+-.|...+.
T Consensus 236 It~Llsqiv 244 (306)
T PF04849_consen 236 ITSLLSQIV 244 (306)
T ss_pred HHHHHHHHH
Confidence 655544443
No 66
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.48 E-value=0.044 Score=57.48 Aligned_cols=49 Identities=27% Similarity=0.409 Sum_probs=31.9
Q ss_pred ceeeeeeecCCCCCcHHHHHHHHhhhHhhhccCcceEEEeeccCCCCcceee
Q 003511 64 KNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 64 k~F~FD~VF~~~atQeeVy~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM 115 (814)
..|+||.-+.. ..++..|. .+..+.+.--..+|. +|-||++|+||||.|
T Consensus 3 ~~~tFdnfv~g-~~N~~a~~-~~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL 51 (219)
T PF00308_consen 3 PKYTFDNFVVG-ESNELAYA-AAKAIAENPGERYNP-LFLYGPSGLGKTHLL 51 (219)
T ss_dssp TT-SCCCS--T-TTTHHHHH-HHHHHHHSTTTSSSE-EEEEESTTSSHHHHH
T ss_pred CCCccccCCcC-CcHHHHHH-HHHHHHhcCCCCCCc-eEEECCCCCCHHHHH
Confidence 46999997653 34677774 455666652233455 788999999999965
No 67
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.44 E-value=10 Score=44.79 Aligned_cols=16 Identities=25% Similarity=0.540 Sum_probs=12.5
Q ss_pred EEEeeccCCCCcceee
Q 003511 100 TVFAYGSTGSGKTYTM 115 (814)
Q Consensus 100 tIfAYGqTGSGKTyTM 115 (814)
..+-+|++|+|||..+
T Consensus 29 ~~~i~G~NG~GKStll 44 (562)
T PHA02562 29 KTLITGKNGAGKSTML 44 (562)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4456899999998754
No 68
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.22 E-value=4.2 Score=48.77 Aligned_cols=44 Identities=30% Similarity=0.314 Sum_probs=19.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 407 LNVLSLEISENAQERINLQNALFELEETNLRIRAELQYLDDAIAKK 452 (814)
Q Consensus 407 l~~l~~~~~e~~~e~~~lq~~l~elee~~~~~~~e~~~l~~~~~~~ 452 (814)
++.++.++.+.......+ .+.+.++.+.....++..|.+.+.++
T Consensus 258 i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE 301 (569)
T PRK04778 258 IQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILERE 301 (569)
T ss_pred HHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433332222 23334444445555555555554443
No 69
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.10 E-value=7 Score=51.91 Aligned_cols=33 Identities=6% Similarity=-0.187 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhc
Q 003511 529 ANIELQFEMAMRDQVIHNQRAAQRQLWNLLMRS 561 (814)
Q Consensus 529 ~~~elq~e~~~r~~~I~~~r~~~~~lW~~l~~~ 561 (814)
.-.+|+..+.-+...+++++.....+-+.|..+
T Consensus 436 SdEeLe~~LenF~aklee~e~qL~elE~kL~~l 468 (1486)
T PRK04863 436 TADNAEDWLEEFQAKEQEATEELLSLEQKLSVA 468 (1486)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666666666655
No 70
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=92.99 E-value=23 Score=46.39 Aligned_cols=22 Identities=0% Similarity=0.166 Sum_probs=12.0
Q ss_pred ceeeccCCCCCCchhhhHHHHH
Q 003511 112 TYTMVGTKSDPGLMVLSLHTIF 133 (814)
Q Consensus 112 TyTM~G~~~~~GIIpral~~LF 133 (814)
-|.|.++...---||+++..++
T Consensus 170 ~fSL~~s~~~~~hI~kli~~vl 191 (1201)
T PF12128_consen 170 RFSLCESSHQYQHIEKLINAVL 191 (1201)
T ss_pred hcCcCCCcccccChHHHHHHHH
Confidence 4666665544455566555444
No 71
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=92.94 E-value=23 Score=43.00 Aligned_cols=16 Identities=31% Similarity=0.663 Sum_probs=8.8
Q ss_pred eeCCCCCChHHHHHHH
Q 003511 324 TISPVDSQYHHTLNTL 339 (814)
Q Consensus 324 tISPs~~~~eETlsTL 339 (814)
.|||....|..-++||
T Consensus 399 ~~ssl~~e~~QRva~l 414 (961)
T KOG4673|consen 399 EVSSLREEYHQRVATL 414 (961)
T ss_pred cccchHHHHHHHHHHH
Confidence 3566555555555555
No 72
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.81 E-value=11 Score=44.39 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccC
Q 003511 365 DYQRMIDNLQIEVCRLKKELADKD 388 (814)
Q Consensus 365 ~~~~~I~~L~~Ei~~Lk~eL~~~~ 388 (814)
.++......+.|+..++..+....
T Consensus 54 Eleaeyd~~R~Eldqtkeal~q~~ 77 (772)
T KOG0999|consen 54 ELEAEYDLARTELDQTKEALGQYR 77 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555666665555443
No 73
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=92.80 E-value=16 Score=41.94 Aligned_cols=67 Identities=13% Similarity=0.083 Sum_probs=35.3
Q ss_pred CCCcceeEEEeeCCCCCChHHHHHHHHHHHHH--hhcccccccccccccccchHHHHHHHHHHHHHHHHHHHHhc
Q 003511 314 SGNSQTVMVATISPVDSQYHHTLNTLKYADRA--KKIKTHIQKNIGSIDTHVSDYQRMIDNLQIEVCRLKKELAD 386 (814)
Q Consensus 314 GGnskT~mIatISPs~~~~eETlsTLrfA~Ra--k~Ikn~~~~N~~~~~~~~~~~~~~I~~L~~Ei~~Lk~eL~~ 386 (814)
.+++..+-|..-++++.-...-.+++-=+-.. ...++... .....-+...+.+++.++.....+|..
T Consensus 128 ~~~s~ii~is~~~~dp~~A~~i~n~~~~~y~~~~~~~~~~~~------~~~~~fl~~ql~~~~~~l~~ae~~l~~ 196 (444)
T TIGR03017 128 SRESSVISIEFSGVDPRFAATVANAFAQAYIDTNIELKVEPA------QKAALWFVQQIAALREDLARAQSKLSA 196 (444)
T ss_pred cCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777888888776666666655322222 22221111 111234455666666666666665554
No 74
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=92.74 E-value=34 Score=46.61 Aligned_cols=49 Identities=16% Similarity=0.090 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhc
Q 003511 513 NKTYLRILSQYRILGMANIELQFEMAMRDQVIHNQRAAQRQLWNLLMRS 561 (814)
Q Consensus 513 ~~~~~~lL~k~~~l~~~~~elq~e~~~r~~~I~~~r~~~~~lW~~l~~~ 561 (814)
+..+..+..+.++|.....+++.++....+..+...+..+.|=+.|..+
T Consensus 1089 ~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l 1137 (1930)
T KOG0161|consen 1089 QAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEEL 1137 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666677777666666666555555554444444444444444
No 75
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.67 E-value=24 Score=44.50 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=22.2
Q ss_pred hccCcceEEEeeccCCCCcceeeccCCCCCCchhhhHHHHHHHHh
Q 003511 93 VVQGLNATVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTIFDLIK 137 (814)
Q Consensus 93 vl~GyN~tIfAYGqTGSGKTyTM~G~~~~~GIIpral~~LF~~i~ 137 (814)
+-.-.|+.| |..||||+--.. -|..++.+.|..+.
T Consensus 23 fSph~NvIV---GrNGSGKSNFF~-------AIrFVLSDey~hLk 57 (1200)
T KOG0964|consen 23 FSPHHNVIV---GRNGSGKSNFFH-------AIRFVLSDEYSHLK 57 (1200)
T ss_pred CCCCcceEe---cCCCCCchhhHH-------HhhhhcccchhhcC
Confidence 334445544 999999975442 24556677777774
No 76
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=92.59 E-value=17 Score=49.25 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=19.9
Q ss_pred hhHhhhc-cCcceEEEeeccCCCCccee
Q 003511 88 SVISGVV-QGLNATVFAYGSTGSGKTYT 114 (814)
Q Consensus 88 plV~~vl-~GyN~tIfAYGqTGSGKTyT 114 (814)
....+.| ++-|.+|+.-|-+|+|||-.
T Consensus 157 ~AYr~mL~~renQSiLiTGESGAGKTeN 184 (1930)
T KOG0161|consen 157 EAYRNMLQDRENQSILITGESGAGKTEN 184 (1930)
T ss_pred HHHHHHHhcCCCceEeeecCCCCCcchh
Confidence 3334444 67899999999999999853
No 77
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=92.39 E-value=37 Score=42.44 Aligned_cols=46 Identities=13% Similarity=0.036 Sum_probs=24.8
Q ss_pred HhhhhhHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhcccchHHHH
Q 003511 524 RILGMANIELQFEMAMRDQVIHNQRAAQRQLWNLLMRSGVDEKHLL 569 (814)
Q Consensus 524 ~~l~~~~~elq~e~~~r~~~I~~~r~~~~~lW~~l~~~~~~~~~~~ 569 (814)
..++.+..-++.++.--+..+.+-.+.....-.-|+.+-..|...+
T Consensus 497 e~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~ 542 (980)
T KOG0980|consen 497 ESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLA 542 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3333344444444444444455555555666666777766666655
No 78
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=91.91 E-value=16 Score=44.83 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHhc
Q 003511 542 QVIHNQRAAQRQLWNLLMRS 561 (814)
Q Consensus 542 ~~I~~~r~~~~~lW~~l~~~ 561 (814)
..|+++-..+++|.++-.++
T Consensus 529 itlrQrDaEi~RL~eLtR~L 548 (861)
T PF15254_consen 529 ITLRQRDAEIERLRELTRTL 548 (861)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555
No 79
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.82 E-value=20 Score=45.07 Aligned_cols=14 Identities=21% Similarity=0.230 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 003511 368 RMIDNLQIEVCRLK 381 (814)
Q Consensus 368 ~~I~~L~~Ei~~Lk 381 (814)
..++.|+.|-+.|+
T Consensus 198 erLreLEeEKeeL~ 211 (1200)
T KOG0964|consen 198 ERLRELEEEKEELE 211 (1200)
T ss_pred HHHHHHHHhHHHHH
Confidence 34445555544443
No 80
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=91.81 E-value=27 Score=41.83 Aligned_cols=31 Identities=10% Similarity=0.172 Sum_probs=24.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHhccCCC
Q 003511 360 DTHVSDYQRMIDNLQIEVCRLKKELADKDSQ 390 (814)
Q Consensus 360 ~~~~~~~~~~I~~L~~Ei~~Lk~eL~~~~~~ 390 (814)
+..+..|-..++.|+.|+..|..+|...+..
T Consensus 48 NDRLA~YIekVR~LEaqN~~L~~di~~lr~~ 78 (546)
T KOG0977|consen 48 NDRLAVYIEKVRFLEAQNRKLEHDINLLRGV 78 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456778888999999999999998776543
No 81
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.72 E-value=37 Score=42.03 Aligned_cols=26 Identities=4% Similarity=-0.018 Sum_probs=17.2
Q ss_pred CCcceeEEEeeCCCCCChHHHHHHHH
Q 003511 315 GNSQTVMVATISPVDSQYHHTLNTLK 340 (814)
Q Consensus 315 GnskT~mIatISPs~~~~eETlsTLr 340 (814)
+++..+-|..-++++.-...-.++|-
T Consensus 152 ~~s~ii~Is~~~~dP~~Aa~iaN~la 177 (754)
T TIGR01005 152 EKTRIIAIEFRSEDPKLAAAIPDAIA 177 (754)
T ss_pred CccEEEEEEEecCCHHHHHHHHHHHH
Confidence 45667777777777766666666653
No 82
>PRK02224 chromosome segregation protein; Provisional
Probab=91.42 E-value=40 Score=42.36 Aligned_cols=13 Identities=38% Similarity=0.585 Sum_probs=10.5
Q ss_pred eeccCCCCcceee
Q 003511 103 AYGSTGSGKTYTM 115 (814)
Q Consensus 103 AYGqTGSGKTyTM 115 (814)
-+|++|||||..+
T Consensus 28 i~G~Ng~GKStil 40 (880)
T PRK02224 28 IHGVNGSGKSSLL 40 (880)
T ss_pred EECCCCCCHHHHH
Confidence 4799999997663
No 83
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.19 E-value=35 Score=45.23 Aligned_cols=38 Identities=11% Similarity=0.092 Sum_probs=21.4
Q ss_pred HhhhhhHHHHHHHHHHh--HhHHHHHHHHHHHHHHHHHhc
Q 003511 524 RILGMANIELQFEMAMR--DQVIHNQRAAQRQLWNLLMRS 561 (814)
Q Consensus 524 ~~l~~~~~elq~e~~~r--~~~I~~~r~~~~~lW~~l~~~ 561 (814)
..+......++..+..+ .+-|.+.+..+..|-.-++..
T Consensus 1008 ~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~ 1047 (1311)
T TIGR00606 1008 DTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQM 1047 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33344555566666666 666666666566665555544
No 84
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.18 E-value=0.18 Score=55.58 Aligned_cols=30 Identities=23% Similarity=0.515 Sum_probs=27.4
Q ss_pred HhhhHhhhccCcceEEEeeccCCCCcceee
Q 003511 86 ISSVISGVVQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 86 v~plV~~vl~GyN~tIfAYGqTGSGKTyTM 115 (814)
+.+++..+++--++.|+.-|+||||||.||
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence 457888899999999999999999999998
No 85
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.15 E-value=34 Score=42.44 Aligned_cols=50 Identities=16% Similarity=0.105 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhcc
Q 003511 513 NKTYLRILSQYRILGMANIELQFEMAMRDQVIHNQRAAQRQLWNLLMRSG 562 (814)
Q Consensus 513 ~~~~~~lL~k~~~l~~~~~elq~e~~~r~~~I~~~r~~~~~lW~~l~~~~ 562 (814)
++.+..++++-.++...+.++|.++.-.++-|+..-+.....=+-+...|
T Consensus 791 qeqv~El~~~l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~ 840 (970)
T KOG0946|consen 791 QEQVIELLKNLSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMG 840 (970)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhh
Confidence 44555666666666677777777776666666655544443333333333
No 86
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.08 E-value=30 Score=44.47 Aligned_cols=29 Identities=21% Similarity=0.367 Sum_probs=22.1
Q ss_pred CccceecccccccccCCCCcccccCCCCCccc
Q 003511 664 PSTYLKLRNCSEQWIDSTPGSWFETPGKHPQD 695 (814)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (814)
--+|+-|++-.+|-.+..| ..||.+-|+-
T Consensus 668 raTFi~LDki~~~~~~l~~---i~tpenvPRL 696 (1293)
T KOG0996|consen 668 RATFIILDKIKDHQKKLAP---ITTPENVPRL 696 (1293)
T ss_pred ceeEEehHhhhhhhhccCC---CCCCCCcchH
Confidence 4578888888777777777 7889887764
No 87
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.05 E-value=22 Score=37.18 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 003511 367 QRMIDNLQIEVCRLKKELA 385 (814)
Q Consensus 367 ~~~I~~L~~Ei~~Lk~eL~ 385 (814)
-.+|..|+.||..+|+...
T Consensus 26 L~lIksLKeei~emkk~e~ 44 (201)
T PF13851_consen 26 LELIKSLKEEIAEMKKKEE 44 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3578888888888876544
No 88
>PRK06893 DNA replication initiation factor; Validated
Probab=90.76 E-value=0.22 Score=52.47 Aligned_cols=48 Identities=15% Similarity=0.220 Sum_probs=32.5
Q ss_pred cceeeeeeecCCCCCcHHHHHHHHhhhHhhhccCcceEEEeeccCCCCcceeec
Q 003511 63 EKNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMV 116 (814)
Q Consensus 63 ~k~F~FD~VF~~~atQeeVy~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 116 (814)
...++||..+..+. ..- +..+...+-.++|..++-||++|+||||.+.
T Consensus 10 ~~~~~fd~f~~~~~-~~~-----~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ 57 (229)
T PRK06893 10 IDDETLDNFYADNN-LLL-----LDSLRKNFIDLQQPFFYIWGGKSSGKSHLLK 57 (229)
T ss_pred CCcccccccccCCh-HHH-----HHHHHHHhhccCCCeEEEECCCCCCHHHHHH
Confidence 35689999886552 221 2222333345778889999999999999763
No 89
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=90.71 E-value=38 Score=39.31 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhc
Q 003511 529 ANIELQFEMAMRDQVIHNQRAAQRQLWNLLMRS 561 (814)
Q Consensus 529 ~~~elq~e~~~r~~~I~~~r~~~~~lW~~l~~~ 561 (814)
...++..++...++.+++.+..-.+|-+.|+.+
T Consensus 211 ~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~ 243 (420)
T COG4942 211 TLAQLNSELSADQKKLEELRANESRLKNEIASA 243 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 445566666666666666666666666666665
No 90
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=90.61 E-value=37 Score=40.94 Aligned_cols=47 Identities=11% Similarity=0.041 Sum_probs=22.7
Q ss_pred hHhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCceecccccCCCCCCCCc
Q 003511 540 RDQVIHNQRAAQRQLWNLLMRSGVDEKHLLDLAAKHGITIEDWSMDSHVGLPER 593 (814)
Q Consensus 540 r~~~I~~~r~~~~~lW~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 593 (814)
+|..|+++|. .|-.--+.+.-+.=++-+-+.+++-...-|..++..+
T Consensus 293 kdr~ie~lr~-------~ln~y~k~~~iv~i~qg~~~~~~s~~e~~p~s~~S~~ 339 (861)
T KOG1899|consen 293 KDRFIESLRN-------YLNNYDKNAQIVRILQGEPSDSMSHSESFPVSSSSTT 339 (861)
T ss_pred hhhHHHHHHH-------HhhhhhhhhhhhhhhcCCCcccccccccccccccccc
Confidence 5555666555 3333322233333444555566655555555555443
No 91
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.59 E-value=38 Score=39.14 Aligned_cols=32 Identities=31% Similarity=0.285 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 421 RINLQNALFELEETNLRIRAELQYLDDAIAKK 452 (814)
Q Consensus 421 ~~~lq~~l~elee~~~~~~~e~~~l~~~~~~~ 452 (814)
..++|.++..+++.+..++..+..|...+.++
T Consensus 299 ~Enlqmr~qqleeentelRs~~arlksl~dkl 330 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIARLKSLADKL 330 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666667777777777766665544443
No 92
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.53 E-value=65 Score=41.65 Aligned_cols=12 Identities=42% Similarity=0.767 Sum_probs=9.9
Q ss_pred eccCCCCcceee
Q 003511 104 YGSTGSGKTYTM 115 (814)
Q Consensus 104 YGqTGSGKTyTM 115 (814)
.||.||||+-.+
T Consensus 114 vGPNGSGKSNVI 125 (1293)
T KOG0996|consen 114 VGPNGSGKSNVI 125 (1293)
T ss_pred ECCCCCCchHHH
Confidence 499999998654
No 93
>PHA02562 46 endonuclease subunit; Provisional
Probab=90.51 E-value=43 Score=39.62 Aligned_cols=13 Identities=15% Similarity=0.273 Sum_probs=6.4
Q ss_pred cchhhhhhcccCC
Q 003511 302 NSKLTRILKDGLS 314 (814)
Q Consensus 302 dSKLTrLLkdsLG 314 (814)
+..-..+|.+.+|
T Consensus 149 ~~er~~il~~l~~ 161 (562)
T PHA02562 149 APARRKLVEDLLD 161 (562)
T ss_pred hHhHHHHHHHHhC
Confidence 3444555555554
No 94
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=90.41 E-value=30 Score=42.00 Aligned_cols=36 Identities=11% Similarity=0.169 Sum_probs=20.6
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhc
Q 003511 536 EMAMRDQVIHNQRAAQRQLWNLLMRSGVDEKHLLDLAAKH 575 (814)
Q Consensus 536 e~~~r~~~I~~~r~~~~~lW~~l~~~~~~~~~~~~~~~~~ 575 (814)
.+.+=+|| ..|++-+.+.+.=-..+ +++|=-+..+-
T Consensus 493 IlEIv~NI-~KQk~eI~KIl~DTr~l---QkeiN~l~gkL 528 (594)
T PF05667_consen 493 ILEIVKNI-RKQKEEIEKILSDTREL---QKEINSLTGKL 528 (594)
T ss_pred HHHHHHhH-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 34444443 44554477777777777 66665554443
No 95
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=90.38 E-value=62 Score=41.18 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=17.8
Q ss_pred CCCCChHHHHHHHHHHHHHhhcccc
Q 003511 327 PVDSQYHHTLNTLKYADRAKKIKTH 351 (814)
Q Consensus 327 Ps~~~~eETlsTLrfA~Rak~Ikn~ 351 (814)
|+..+-+-+...+.|++|+-..+..
T Consensus 248 ~d~~ykerlmDs~fykdRveelked 272 (1195)
T KOG4643|consen 248 PDTTYKERLMDSDFYKDRVEELKED 272 (1195)
T ss_pred CCCccchhhhhhHHHHHHHHHHHhh
Confidence 4455566777888889988877643
No 96
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.20 E-value=26 Score=43.13 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=12.2
Q ss_pred HHHhhhHhhhccCcce
Q 003511 84 ACISSVISGVVQGLNA 99 (814)
Q Consensus 84 ~~v~plV~~vl~GyN~ 99 (814)
.++-.||...|.|+..
T Consensus 72 SIAmkLi~lkLqG~~l 87 (1118)
T KOG1029|consen 72 SIAMKLIKLKLQGIQL 87 (1118)
T ss_pred HHHHHHHHHHhcCCcC
Confidence 4567788888888875
No 97
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=89.91 E-value=54 Score=40.06 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccC
Q 003511 365 DYQRMIDNLQIEVCRLKKELADKD 388 (814)
Q Consensus 365 ~~~~~I~~L~~Ei~~Lk~eL~~~~ 388 (814)
.....|..|...|.+|+.++....
T Consensus 47 ~~~~~V~eLE~sL~eLk~q~~~~~ 70 (617)
T PF15070_consen 47 HDISRVQELERSLSELKNQMAEPP 70 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccC
Confidence 344567778888888887776644
No 98
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=89.71 E-value=30 Score=44.30 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCC
Q 003511 368 RMIDNLQIEVCRLKKELADKDSQP 391 (814)
Q Consensus 368 ~~I~~L~~Ei~~Lk~eL~~~~~~~ 391 (814)
.++++-..|+..|-+++..--.+.
T Consensus 1464 ~q~~~s~~el~~Li~~v~~Flt~~ 1487 (1758)
T KOG0994|consen 1464 SQMEESNRELRNLIQQVRDFLTQP 1487 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344444444444444444433333
No 99
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=89.58 E-value=63 Score=40.12 Aligned_cols=18 Identities=17% Similarity=0.241 Sum_probs=8.5
Q ss_pred hHhHHHHHHHHHHHHHHH
Q 003511 540 RDQVIHNQRAAQRQLWNL 557 (814)
Q Consensus 540 r~~~I~~~r~~~~~lW~~ 557 (814)
+.+.|+++.+++-++.++
T Consensus 454 rrraIeQcnemv~rir~l 471 (1265)
T KOG0976|consen 454 RRRAIEQCNEMVDRIRAL 471 (1265)
T ss_pred HhhHHHHHHHHHHHHHHH
Confidence 444555555544444433
No 100
>PRK09039 hypothetical protein; Validated
Probab=89.45 E-value=18 Score=40.95 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=12.0
Q ss_pred EEeeCCCCCChHHHHHHHHHH
Q 003511 322 VATISPVDSQYHHTLNTLKYA 342 (814)
Q Consensus 322 IatISPs~~~~eETlsTLrfA 342 (814)
=+.|+|. |-+.++||=+.
T Consensus 12 ~~~~wpg---~vd~~~~ll~~ 29 (343)
T PRK09039 12 GVDYWPG---FVDALSTLLLV 29 (343)
T ss_pred CCCCCch---HHHHHHHHHHH
Confidence 3567775 66778887654
No 101
>PRK02224 chromosome segregation protein; Provisional
Probab=89.43 E-value=69 Score=40.34 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 003511 365 DYQRMIDNLQIEVCRLKKELA 385 (814)
Q Consensus 365 ~~~~~I~~L~~Ei~~Lk~eL~ 385 (814)
.+...++.+..++..|..++.
T Consensus 472 ~~~~~~~~~~~~~~~le~~l~ 492 (880)
T PRK02224 472 EDRERVEELEAELEDLEEEVE 492 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554443
No 102
>PRK06620 hypothetical protein; Validated
Probab=89.02 E-value=0.17 Score=52.88 Aligned_cols=50 Identities=30% Similarity=0.395 Sum_probs=33.4
Q ss_pred cceeeeeeecCCCCCcHHHHHHHHhhhHhhhccCcc---eEEEeeccCCCCcceeec
Q 003511 63 EKNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLN---ATVFAYGSTGSGKTYTMV 116 (814)
Q Consensus 63 ~k~F~FD~VF~~~atQeeVy~~~v~plV~~vl~GyN---~tIfAYGqTGSGKTyTM~ 116 (814)
...|+||..+..++ +...|.. +..+.+. -|+| -.++-||++||||||.+.
T Consensus 10 ~~~~tfd~Fvvg~~-N~~a~~~-~~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 10 SSKYHPDEFIVSSS-NDQAYNI-IKNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCCchhhEeccc-HHHHHHH-HHHHHHc--cccCCCcceEEEECCCCCCHHHHHH
Confidence 45789998776554 4557754 3334432 1343 358999999999999874
No 103
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.01 E-value=52 Score=38.37 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 464 ALKSRRQIILDNIRENDEAGINYQKEIEENESRRCELQKMIDE 506 (814)
Q Consensus 464 ~l~~~~q~l~~~~~~~~e~~~~~q~eie~~e~~~~~Le~~l~~ 506 (814)
.+..+...+..++++.++.+.++..+-.++.++.+.+.+.|.+
T Consensus 386 ~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~R 428 (521)
T KOG1937|consen 386 VYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNR 428 (521)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555666777788877777777777777777777777766663
No 104
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=88.77 E-value=7.9 Score=41.61 Aligned_cols=10 Identities=20% Similarity=0.202 Sum_probs=4.4
Q ss_pred CceecccccC
Q 003511 576 GITIEDWSMD 585 (814)
Q Consensus 576 ~~~~e~~~~~ 585 (814)
|..--||.|-
T Consensus 197 g~~C~GC~m~ 206 (239)
T COG1579 197 GRVCGGCHMK 206 (239)
T ss_pred CCcccCCeee
Confidence 3344455444
No 105
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=88.72 E-value=60 Score=40.66 Aligned_cols=86 Identities=27% Similarity=0.332 Sum_probs=43.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhccCCCCCC--Ccch---hhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 361 THVSDYQRMIDNLQIEVCRLKKELADKDSQPSV--KPAE---KAADDELSWLNVLSLEISENAQERINLQNALFELEETN 435 (814)
Q Consensus 361 ~~~~~~~~~I~~L~~Ei~~Lk~eL~~~~~~~~~--~~~~---~~~~~e~~~l~~l~~~~~e~~~e~~~lq~~l~elee~~ 435 (814)
..+..+.+.|+.|+.||..|+..+......... +..+ .........++.+..++.....+...++..+..+.+..
T Consensus 238 ~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~ 317 (775)
T PF10174_consen 238 TKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQD 317 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 344555666666777777776654322211000 0000 00000112255566677777777777777777666665
Q ss_pred HHHHHHHHHHH
Q 003511 436 LRIRAELQYLD 446 (814)
Q Consensus 436 ~~~~~e~~~l~ 446 (814)
...+.-+..+.
T Consensus 318 ~d~r~hi~~lk 328 (775)
T PF10174_consen 318 SDMRQHIEVLK 328 (775)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 106
>PLN02939 transferase, transferring glycosyl groups
Probab=88.62 E-value=41 Score=42.93 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhccC
Q 003511 373 LQIEVCRLKKELADKD 388 (814)
Q Consensus 373 L~~Ei~~Lk~eL~~~~ 388 (814)
|..+++.|+.+|....
T Consensus 199 ~~~~~~~~~~~~~~~~ 214 (977)
T PLN02939 199 LEEQLEKLRNELLIRG 214 (977)
T ss_pred hHHHHHHHhhhhhccc
Confidence 5566666776666544
No 107
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=88.48 E-value=16 Score=35.37 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003511 462 VEALKSRRQIILDNIRENDEAGINYQKEIEENESRRC 498 (814)
Q Consensus 462 ~e~l~~~~q~l~~~~~~~~e~~~~~q~eie~~e~~~~ 498 (814)
.+.+..+.+.+++.+.+..+...+++.+|..++...+
T Consensus 77 l~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 77 LEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYR 113 (120)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777777777776666544
No 108
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.40 E-value=9.5 Score=42.54 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=16.3
Q ss_pred hHHHHHHHHhcCceecccccCCCCCCCCc
Q 003511 565 EKHLLDLAAKHGITIEDWSMDSHVGLPER 593 (814)
Q Consensus 565 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 593 (814)
=-.+.=+|.+.|+...+..+-|.-+.+..
T Consensus 179 ~LLL~~la~~l~~~f~~y~l~P~Gs~S~I 207 (314)
T PF04111_consen 179 ALLLQTLAKKLNFKFQRYRLVPMGSFSKI 207 (314)
T ss_dssp HHHHHHHHHHCT---SSEEEE--GGG-EE
T ss_pred HHHHHHHHHHhCCCcccceeEecCCCCEE
Confidence 33466889999999999988875544443
No 109
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=88.14 E-value=74 Score=40.53 Aligned_cols=37 Identities=11% Similarity=-0.051 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhcccc
Q 003511 528 MANIELQFEMAMRDQVIHNQRAAQRQLWNLLMRSGVD 564 (814)
Q Consensus 528 ~~~~elq~e~~~r~~~I~~~r~~~~~lW~~l~~~~~~ 564 (814)
..+..++.+...++.-|..-++++-..-+-|..+-+-
T Consensus 325 ~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~~~ 361 (1072)
T KOG0979|consen 325 NKLESLKKAAEKRQKRIEKAKKMILDAQAELQETEDP 361 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCc
Confidence 3455555566666666666666666666666655443
No 110
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.94 E-value=40 Score=41.31 Aligned_cols=35 Identities=31% Similarity=0.356 Sum_probs=27.4
Q ss_pred hhhhHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHh
Q 003511 526 LGMANIELQFEMAMRDQVIHNQRAAQRQLWNLLMR 560 (814)
Q Consensus 526 l~~~~~elq~e~~~r~~~I~~~r~~~~~lW~~l~~ 560 (814)
|+....+|+.+.--|.+.+.+.+.-...||++|-.
T Consensus 231 L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn~l~t 265 (660)
T KOG4302|consen 231 LDKMVKKLKEEKKQRLQKLQDLRTKLLELWNLLDT 265 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34566667777777888899999999999998743
No 111
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.92 E-value=49 Score=36.99 Aligned_cols=19 Identities=21% Similarity=0.142 Sum_probs=13.5
Q ss_pred hHHHHHHHHhcCceecccc
Q 003511 565 EKHLLDLAAKHGITIEDWS 583 (814)
Q Consensus 565 ~~~~~~~~~~~~~~~e~~~ 583 (814)
|.++-.|...+|+.|.+..
T Consensus 282 k~~~~~Le~~~gw~~~~~~ 300 (325)
T PF08317_consen 282 KAKVDALEKLTGWKIVSIS 300 (325)
T ss_pred HHHHHHHHHHHCcEEEEEe
Confidence 5556677888998886554
No 112
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=87.72 E-value=72 Score=38.47 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003511 424 LQNALFELEETNLRIRAELQYLD 446 (814)
Q Consensus 424 lq~~l~elee~~~~~~~e~~~l~ 446 (814)
+...+..+++.+..+..++.++.
T Consensus 315 l~~~l~~~~e~~~~l~~Ei~~l~ 337 (569)
T PRK04778 315 LPDFLEHAKEQNKELKEEIDRVK 337 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555554443
No 113
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=87.66 E-value=0.32 Score=58.47 Aligned_cols=51 Identities=27% Similarity=0.372 Sum_probs=35.8
Q ss_pred cceeeeeeecCCCCCcHHHHHHHHhhhHhhhccCcceEEEeeccCCCCcceeec
Q 003511 63 EKNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMV 116 (814)
Q Consensus 63 ~k~F~FD~VF~~~atQeeVy~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 116 (814)
...|+||..+-.. .+..+| ..+..++++.-.+||. ||-||.+|+||||.+.
T Consensus 282 ~~~~TFDnFvvG~-sN~~A~-aaa~avae~~~~~~Np-L~LyG~sGsGKTHLL~ 332 (617)
T PRK14086 282 NPKYTFDTFVIGA-SNRFAH-AAAVAVAEAPAKAYNP-LFIYGESGLGKTHLLH 332 (617)
T ss_pred CCCCCHhhhcCCC-ccHHHH-HHHHHHHhCccccCCc-EEEECCCCCCHHHHHH
Confidence 4579998865433 345556 3455666655556786 7999999999999774
No 114
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=87.50 E-value=50 Score=40.96 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=24.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 473 LDNIRENDEAGINYQKEIEENESRRCELQKMIDEAV 508 (814)
Q Consensus 473 ~~~~~~~~e~~~~~q~eie~~e~~~~~Le~~l~~~i 508 (814)
+..++.+.-....++.+|..++++...|...+.+++
T Consensus 113 vs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~ 148 (717)
T PF09730_consen 113 VSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAA 148 (717)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566777888888888877777777665
No 115
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=87.37 E-value=86 Score=40.76 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003511 366 YQRMIDNLQIEVCRLKKEL 384 (814)
Q Consensus 366 ~~~~I~~L~~Ei~~Lk~eL 384 (814)
...++++|+..+++++.+.
T Consensus 463 ~~~~~keL~e~i~~lk~~~ 481 (1317)
T KOG0612|consen 463 LEEMDKELEETIEKLKSEE 481 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445666666666665543
No 116
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=87.36 E-value=79 Score=38.52 Aligned_cols=41 Identities=22% Similarity=0.200 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 465 LKSRRQIILDNIRENDEAGINYQKEIEENESRRCELQKMID 505 (814)
Q Consensus 465 l~~~~q~l~~~~~~~~e~~~~~q~eie~~e~~~~~Le~~l~ 505 (814)
...+.-.|+.+++++.+.|.+.-.+...+.++++.|...|.
T Consensus 489 Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~ 529 (594)
T PF05667_consen 489 YTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLD 529 (594)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777666666655566666666665555555
No 117
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.76 E-value=0.31 Score=56.95 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=25.3
Q ss_pred hhHhhhccCcceEEEeeccCCCCcceeecc
Q 003511 88 SVISGVVQGLNATVFAYGSTGSGKTYTMVG 117 (814)
Q Consensus 88 plV~~vl~GyN~tIfAYGqTGSGKTyTM~G 117 (814)
..+..+++.-++.|+.-|+||||||.||+.
T Consensus 248 ~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 248 ARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 345567788889999999999999999974
No 118
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=86.56 E-value=0.48 Score=53.99 Aligned_cols=50 Identities=28% Similarity=0.387 Sum_probs=32.1
Q ss_pred cceeeeeeecCCCCCcHHHHHHHHhhhHhhhccCcceEEEeeccCCCCcceee
Q 003511 63 EKNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 63 ~k~F~FD~VF~~~atQeeVy~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM 115 (814)
...|+||.-.- +..+...|. .+..+.+.--..+| .++-||++|+||||.+
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~-~~~~~~~~~~~~~n-~l~l~G~~G~GKThL~ 153 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHA-AALAVAENPGKAYN-PLFIYGGVGLGKTHLL 153 (405)
T ss_pred CCCCccccccc-CCcHHHHHH-HHHHHHhCcCccCC-eEEEECCCCCcHHHHH
Confidence 46799998442 344555663 35555554222244 4778999999999976
No 119
>PRK12377 putative replication protein; Provisional
Probab=86.38 E-value=0.43 Score=51.30 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=34.4
Q ss_pred eeeeeecCCCCCcHHHHHHHHhhhHhhhccCcceEEEeeccCCCCcceeec
Q 003511 66 YCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMV 116 (814)
Q Consensus 66 F~FD~VF~~~atQeeVy~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 116 (814)
.+||.-......|..++. .+..+++.+..+. ..++-||++|+||||.+.
T Consensus 71 ~tFdnf~~~~~~~~~a~~-~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~ 119 (248)
T PRK12377 71 CSFANYQVQNDGQRYALS-QAKSIADELMTGC-TNFVFSGKPGTGKNHLAA 119 (248)
T ss_pred CCcCCcccCChhHHHHHH-HHHHHHHHHHhcC-CeEEEECCCCCCHHHHHH
Confidence 367765544556666664 4666777766654 467889999999999774
No 120
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=86.30 E-value=0.48 Score=54.95 Aligned_cols=49 Identities=29% Similarity=0.377 Sum_probs=33.4
Q ss_pred cceeeeeeecCCCCCcHHHHHHHHhhhHhhhccCcceEEEeeccCCCCcceee
Q 003511 63 EKNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 63 ~k~F~FD~VF~~~atQeeVy~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM 115 (814)
...|+||.-+-. ..+...|.. +..+.++ -..||. +|-||++|+||||.|
T Consensus 99 ~~~~tFdnFv~g-~~n~~a~~~-~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl 147 (440)
T PRK14088 99 NPDYTFENFVVG-PGNSFAYHA-ALEVAKN-PGRYNP-LFIYGGVGLGKTHLL 147 (440)
T ss_pred CCCCcccccccC-CchHHHHHH-HHHHHhC-cCCCCe-EEEEcCCCCcHHHHH
Confidence 457999986643 445566654 4444443 123675 899999999999977
No 121
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=86.19 E-value=45 Score=36.13 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003511 428 LFELEETNLRIRAELQYL 445 (814)
Q Consensus 428 l~elee~~~~~~~e~~~l 445 (814)
...++..+.++..|+..+
T Consensus 61 nrdl~t~nqrl~~E~e~~ 78 (333)
T KOG1853|consen 61 NRDLETRNQRLTTEQERN 78 (333)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455555555444
No 122
>PRK08084 DNA replication initiation factor; Provisional
Probab=85.87 E-value=0.57 Score=49.54 Aligned_cols=48 Identities=13% Similarity=0.302 Sum_probs=31.2
Q ss_pred cceeeeeeecCCCCCcHHHHHHHHhhhHhhhccCcceEEEeeccCCCCcceeec
Q 003511 63 EKNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMV 116 (814)
Q Consensus 63 ~k~F~FD~VF~~~atQeeVy~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 116 (814)
...|+||.-+.. .+...+.. +..+.. ......++-||++|+||||.+.
T Consensus 16 ~~~~~fd~f~~~--~n~~a~~~-l~~~~~---~~~~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 16 PDDETFASFYPG--DNDSLLAA-LQNALR---QEHSGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CCcCCccccccC--ccHHHHHH-HHHHHh---CCCCCeEEEECCCCCCHHHHHH
Confidence 346788876644 55666643 444432 1122468999999999999774
No 123
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=85.81 E-value=0.55 Score=54.40 Aligned_cols=50 Identities=30% Similarity=0.400 Sum_probs=32.8
Q ss_pred cceeeeeeecCCCCCcHHHHHHHHhhhHhhhccCcceEEEeeccCCCCcceee
Q 003511 63 EKNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 63 ~k~F~FD~VF~~~atQeeVy~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM 115 (814)
...|+||.-.. +..+...|.. +..+.++--..+| .++-||++|+||||.+
T Consensus 116 ~~~~tfd~fv~-g~~n~~a~~~-~~~~~~~~~~~~~-~l~l~G~~G~GKThL~ 165 (450)
T PRK00149 116 NPKYTFDNFVV-GKSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLL 165 (450)
T ss_pred CCCCccccccc-CCCcHHHHHH-HHHHHhCcCccCC-eEEEECCCCCCHHHHH
Confidence 46789988443 2355556643 4555554323455 4788999999999977
No 124
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=85.74 E-value=49 Score=34.61 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=13.9
Q ss_pred HHHHHHHHhcccchHHHHHH
Q 003511 552 RQLWNLLMRSGVDEKHLLDL 571 (814)
Q Consensus 552 ~~lW~~l~~~~~~~~~~~~~ 571 (814)
..|=.+|.+++++...+-.+
T Consensus 164 aqL~evl~~~nldp~~~~~v 183 (201)
T PF13851_consen 164 AQLNEVLAAANLDPAALSQV 183 (201)
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 35667888888888755443
No 125
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=85.72 E-value=1.2 Score=49.43 Aligned_cols=21 Identities=43% Similarity=0.669 Sum_probs=17.1
Q ss_pred cCcceEEEeeccCCCCcceee
Q 003511 95 QGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 95 ~GyN~tIfAYGqTGSGKTyTM 115 (814)
.+....++.||++|+|||+++
T Consensus 37 ~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 37 GSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCCCCcEEEECCCCCCHHHHH
Confidence 345567899999999999865
No 126
>PRK08116 hypothetical protein; Validated
Probab=85.71 E-value=0.4 Score=51.94 Aligned_cols=51 Identities=22% Similarity=0.344 Sum_probs=34.4
Q ss_pred ceeeeeeecCCCCCcHHHHHHHHhhhHhhhcc--CcceEEEeeccCCCCcceeec
Q 003511 64 KNYCFDRAFGPGCTNLDVYTACISSVISGVVQ--GLNATVFAYGSTGSGKTYTMV 116 (814)
Q Consensus 64 k~F~FD~VF~~~atQeeVy~~~v~plV~~vl~--GyN~tIfAYGqTGSGKTyTM~ 116 (814)
..++||.-. .+..+...|. .+...++++.. ..+..++-||++|+||||.+.
T Consensus 80 ~~~tFdnf~-~~~~~~~a~~-~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 80 RNSTFENFL-FDKGSEKAYK-IARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA 132 (268)
T ss_pred Hhcchhccc-CChHHHHHHH-HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence 357787654 3455555663 46666666543 345568999999999999763
No 127
>PRK06835 DNA replication protein DnaC; Validated
Probab=85.50 E-value=0.38 Score=53.80 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=23.6
Q ss_pred HhhhHhhhccCcceEEEeeccCCCCcceeecc
Q 003511 86 ISSVISGVVQGLNATVFAYGSTGSGKTYTMVG 117 (814)
Q Consensus 86 v~plV~~vl~GyN~tIfAYGqTGSGKTyTM~G 117 (814)
+...++++-.+. -.|+-||++|+||||.+.+
T Consensus 172 ~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 172 CKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 455777766554 5589999999999997744
No 128
>PRK11281 hypothetical protein; Provisional
Probab=85.35 E-value=1.3e+02 Score=39.27 Aligned_cols=24 Identities=4% Similarity=0.007 Sum_probs=11.7
Q ss_pred HhHHHHHHHHHHHHHHHHHhcccc
Q 003511 541 DQVIHNQRAAQRQLWNLLMRSGVD 564 (814)
Q Consensus 541 ~~~I~~~r~~~~~lW~~l~~~~~~ 564 (814)
++.+.+.++-.+++-+.+.-++.|
T Consensus 312 ~~~l~~~~q~~~~i~eqi~~l~~s 335 (1113)
T PRK11281 312 KNWLDRLTQSERNIKEQISVLKGS 335 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 334444445455555555555443
No 129
>PRK09087 hypothetical protein; Validated
Probab=85.02 E-value=0.53 Score=49.68 Aligned_cols=48 Identities=19% Similarity=0.137 Sum_probs=31.6
Q ss_pred cceeeeeeecCCCCCcHHHHHHHHhhhHhhhccCcceEEEeeccCCCCcceeec
Q 003511 63 EKNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMV 116 (814)
Q Consensus 63 ~k~F~FD~VF~~~atQeeVy~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 116 (814)
...|+||.-+..+++ ..+|.. +.....-.+-.++-||++||||||.+.
T Consensus 15 ~~~~~~~~Fi~~~~N-~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 15 DPAYGRDDLLVTESN-RAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCCChhceeecCch-HHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence 356889987754444 447753 232222235558999999999999774
No 130
>PRK05642 DNA replication initiation factor; Validated
Probab=84.54 E-value=0.85 Score=48.25 Aligned_cols=49 Identities=12% Similarity=0.329 Sum_probs=28.5
Q ss_pred cceeeeeeecCCCCCcHHHHHHHHhhhHhhhccCc-ceEEEeeccCCCCcceee
Q 003511 63 EKNYCFDRAFGPGCTNLDVYTACISSVISGVVQGL-NATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 63 ~k~F~FD~VF~~~atQeeVy~~~v~plV~~vl~Gy-N~tIfAYGqTGSGKTyTM 115 (814)
...|+||.-+... +...+.. +..+.+.. .+. ...++-||++|+||||-+
T Consensus 13 ~~~~tfdnF~~~~--~~~a~~~-~~~~~~~~-~~~~~~~l~l~G~~G~GKTHLl 62 (234)
T PRK05642 13 RDDATFANYYPGA--NAAALGY-VERLCEAD-AGWTESLIYLWGKDGVGRSHLL 62 (234)
T ss_pred CCcccccccCcCC--hHHHHHH-HHHHhhcc-ccCCCCeEEEECCCCCCHHHHH
Confidence 3468999877432 3333322 22222211 122 246789999999999976
No 131
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=84.43 E-value=31 Score=40.65 Aligned_cols=84 Identities=14% Similarity=0.081 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcchhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 364 SDYQRMIDNLQIEVCRLKKELADKDSQPSVKPAEKAADDELSWLNVLSLEISENAQERINLQNALFELEETNLRIRAELQ 443 (814)
Q Consensus 364 ~~~~~~I~~L~~Ei~~Lk~eL~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~e~~~e~~~lq~~l~elee~~~~~~~e~~ 443 (814)
+.++..++.+..|+.+|+.+-.....- .+.+.. .+........+++.+.-..-..+++.+....+++.++.+++-
T Consensus 162 EaL~ekLk~~~een~~lr~k~~llk~E-t~~~~~----keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~s 236 (596)
T KOG4360|consen 162 EALQEKLKPLEEENTQLRSKAMLLKTE-TLTYEE----KEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENS 236 (596)
T ss_pred HHHHhhcCChHHHHHHHHHHHHHHHhh-hcchhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666654322211 111111 111112222333333333334455555556666666667766
Q ss_pred HHHHHHHHH
Q 003511 444 YLDDAIAKK 452 (814)
Q Consensus 444 ~l~~~~~~~ 452 (814)
+|...+...
T Consensus 237 kLlsql~d~ 245 (596)
T KOG4360|consen 237 KLLSQLVDL 245 (596)
T ss_pred HHHHHHHhh
Confidence 666555443
No 132
>PRK06526 transposase; Provisional
Probab=84.34 E-value=0.5 Score=50.87 Aligned_cols=45 Identities=22% Similarity=0.257 Sum_probs=27.0
Q ss_pred eeeecCCCCCcHHHHHHHHhhhHhhhccCcceEEEeeccCCCCcceeecc
Q 003511 68 FDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVG 117 (814)
Q Consensus 68 FD~VF~~~atQeeVy~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM~G 117 (814)
||.-+.+.-++..+..-.....++ .+.| |+.||++|+||||.+.+
T Consensus 73 fd~~~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 73 FDFDHQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred ccCccCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHH
Confidence 333344444554444433333333 4444 78999999999998854
No 133
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=84.24 E-value=1.5 Score=49.78 Aligned_cols=37 Identities=24% Similarity=0.558 Sum_probs=25.2
Q ss_pred HhhhccCc-ceEEEeeccCCCCcceeeccCCCCCCchhhhHHHHHHHHhhcC
Q 003511 90 ISGVVQGL-NATVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTIFDLIKKDK 140 (814)
Q Consensus 90 V~~vl~Gy-N~tIfAYGqTGSGKTyTM~G~~~~~GIIpral~~LF~~i~~~~ 140 (814)
+..++.|. ...++.||.||||||.|+ +.+++.+....
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~--------------~~v~~~l~~~~ 70 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATV--------------KFVMEELEESS 70 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHHH--------------HHHHHHHHhhh
Confidence 33344443 334999999999999866 66777766544
No 134
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=84.08 E-value=77 Score=35.45 Aligned_cols=30 Identities=20% Similarity=0.395 Sum_probs=21.6
Q ss_pred HHHH-HHHhHhHHHHHHHHHHHHHHHHHhcc
Q 003511 533 LQFE-MAMRDQVIHNQRAAQRQLWNLLMRSG 562 (814)
Q Consensus 533 lq~e-~~~r~~~I~~~r~~~~~lW~~l~~~~ 562 (814)
|..+ ..+.-.+=++|...+++||-.+..+-
T Consensus 161 Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~ 191 (310)
T PF09755_consen 161 LRREKVDLENTLEQEQEALVNRLWKQMDKLE 191 (310)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 45555666788889999999988883
No 135
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=84.04 E-value=0.66 Score=53.98 Aligned_cols=48 Identities=23% Similarity=0.381 Sum_probs=31.6
Q ss_pred eeeeeeecCCCCCcHHHHHHHHhhhHhhhccCcceEEEeeccCCCCcceee
Q 003511 65 NYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 65 ~F~FD~VF~~~atQeeVy~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM 115 (814)
.|+||.-...+ +++..|. .+..++.+--..|| .+|-||.+|+||||.|
T Consensus 111 ~~tFdnFv~g~-~n~~A~~-aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl 158 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFI-AVQTVSKNPGISYN-PLFIYGESGMGKTHLL 158 (450)
T ss_pred ccchhcccCCC-cHHHHHH-HHHHHHhCcCcccC-ceEEECCCCCcHHHHH
Confidence 58999866444 4555663 35555443212345 4789999999999977
No 136
>PRK07952 DNA replication protein DnaC; Validated
Probab=83.98 E-value=0.73 Score=49.46 Aligned_cols=51 Identities=12% Similarity=0.170 Sum_probs=33.7
Q ss_pred ceeeeeeecCCCCCcHHHHHHHHhhhHhhhccCcceEEEeeccCCCCcceeec
Q 003511 64 KNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMV 116 (814)
Q Consensus 64 k~F~FD~VF~~~atQeeVy~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 116 (814)
...+||...-....|..++.. +...++++..|.. .++-+|.+|+||||.+.
T Consensus 67 ~~~tFdnf~~~~~~q~~al~~-a~~~~~~~~~~~~-~~~l~G~~GtGKThLa~ 117 (244)
T PRK07952 67 QNCSFENYRVECEGQMNALSK-ARQYVEEFDGNIA-SFIFSGKPGTGKNHLAA 117 (244)
T ss_pred cCCccccccCCCchHHHHHHH-HHHHHHhhccCCc-eEEEECCCCCCHHHHHH
Confidence 346777654444456666644 5555666555543 67899999999999774
No 137
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=83.90 E-value=83 Score=37.92 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003511 430 ELEETNLRIRAELQYLDDAIAK 451 (814)
Q Consensus 430 elee~~~~~~~e~~~l~~~~~~ 451 (814)
+.++.+.....++..|-+.+.+
T Consensus 275 ~~~~~~~~i~~~Id~lYd~le~ 296 (560)
T PF06160_consen 275 EVEEENEEIEERIDQLYDILEK 296 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555444433
No 138
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=83.78 E-value=0.59 Score=45.62 Aligned_cols=32 Identities=28% Similarity=0.394 Sum_probs=20.9
Q ss_pred HhhhHhhhccC-cceEEEeeccCCCCcceeecc
Q 003511 86 ISSVISGVVQG-LNATVFAYGSTGSGKTYTMVG 117 (814)
Q Consensus 86 v~plV~~vl~G-yN~tIfAYGqTGSGKTyTM~G 117 (814)
+..+++.+-.+ ....++..++||||||++|..
T Consensus 12 i~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 12 IARIINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 33344443333 345566778999999999974
No 139
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=83.44 E-value=1.5e+02 Score=38.13 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=12.1
Q ss_pred hhhHHHHHHHHHHhHhHHHHHHHHH
Q 003511 527 GMANIELQFEMAMRDQVIHNQRAAQ 551 (814)
Q Consensus 527 ~~~~~elq~e~~~r~~~I~~~r~~~ 551 (814)
.++..+|+.++..-++.+++....+
T Consensus 821 ~lE~e~l~~e~~~~k~~l~~~~~~~ 845 (1174)
T KOG0933|consen 821 QLEHEELEKEISSLKQQLEQLEKQI 845 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555444444444333
No 140
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=82.89 E-value=1e+02 Score=36.05 Aligned_cols=67 Identities=10% Similarity=0.099 Sum_probs=33.1
Q ss_pred CCCcceeEEEeeCCCCCChHHHHHHHH--HHHHHhhcccccccccccccccchHHHHHHHHHHHHHHHHHHHHhc
Q 003511 314 SGNSQTVMVATISPVDSQYHHTLNTLK--YADRAKKIKTHIQKNIGSIDTHVSDYQRMIDNLQIEVCRLKKELAD 386 (814)
Q Consensus 314 GGnskT~mIatISPs~~~~eETlsTLr--fA~Rak~Ikn~~~~N~~~~~~~~~~~~~~I~~L~~Ei~~Lk~eL~~ 386 (814)
.|++..+=|..-++++.-..+-.+++- |-..-...+. ........-+...+.+++.++.....+|..
T Consensus 118 ~~~s~vi~Is~~~~dP~~Aa~i~n~l~~~yi~~~~~~~~------~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~ 186 (498)
T TIGR03007 118 AGRDNLFTISYEDKDPELAKDVVQTLLTIFVEETLGSKR------QDSDSAQRFIDEQIKTYEKKLEAAENRLKA 186 (498)
T ss_pred cCCCCeEEEEeeCCCHHHHHHHHHHHHHHHHHhhcccch------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777766666666642 2111111110 011112233455566666666666666554
No 141
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.78 E-value=62 Score=33.90 Aligned_cols=27 Identities=19% Similarity=0.487 Sum_probs=21.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhccCC
Q 003511 363 VSDYQRMIDNLQIEVCRLKKELADKDS 389 (814)
Q Consensus 363 ~~~~~~~I~~L~~Ei~~Lk~eL~~~~~ 389 (814)
-......|..|..|+.+++.+|...+.
T Consensus 28 ~dSve~KIskLDaeL~k~~~Qi~k~R~ 54 (218)
T KOG1655|consen 28 SDSVEKKISKLDAELCKYKDQIKKTRP 54 (218)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345567899999999999999987654
No 142
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=82.77 E-value=1.4e+02 Score=40.04 Aligned_cols=47 Identities=15% Similarity=0.099 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 003511 465 LKSRRQIILDNIRENDEAGINYQKEIEENESRRCELQKMIDEAVSSN 511 (814)
Q Consensus 465 l~~~~q~l~~~~~~~~e~~~~~q~eie~~e~~~~~Le~~l~~~i~~~ 511 (814)
+........+.+....+.+...+.+++.++.+...++.++..+-.+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~ 327 (1353)
T TIGR02680 281 LSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSP 327 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 33334444455555555666666667777777777777777665554
No 143
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.59 E-value=1.2e+02 Score=36.53 Aligned_cols=31 Identities=13% Similarity=-0.016 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 003511 529 ANIELQFEMAMRDQVIHNQRAAQRQLWNLLM 559 (814)
Q Consensus 529 ~~~elq~e~~~r~~~I~~~r~~~~~lW~~l~ 559 (814)
.+.-||....-...+|+++++.++.+-..|.
T Consensus 440 ~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~ 470 (581)
T KOG0995|consen 440 ELETLQEHFSNKASTIEEKIQILGEIELELK 470 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444555555554444444333
No 144
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=82.47 E-value=1.3e+02 Score=36.85 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=13.3
Q ss_pred EEEeeccCCCCcceee
Q 003511 100 TVFAYGSTGSGKTYTM 115 (814)
Q Consensus 100 tIfAYGqTGSGKTyTM 115 (814)
.++-+|+.|+|||..|
T Consensus 30 ~~~i~G~Ng~GKttll 45 (650)
T TIGR03185 30 IILIGGLNGAGKTTLL 45 (650)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4557899999999876
No 145
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.41 E-value=82 Score=34.54 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=20.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 474 DNIRENDEAGINYQKEIEENESRRCELQKMIDE 506 (814)
Q Consensus 474 ~~~~~~~e~~~~~q~eie~~e~~~~~Le~~l~~ 506 (814)
.++.+....+..++.+|+.+++.+.+.++.|..
T Consensus 73 ~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 73 KEIDQSKAEIKKLQKEIAELKENIVERQELLKK 105 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455566667777776666666666663
No 146
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=82.30 E-value=0.9 Score=41.77 Aligned_cols=19 Identities=32% Similarity=0.543 Sum_probs=15.2
Q ss_pred cceEEEeeccCCCCcceee
Q 003511 97 LNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 97 yN~tIfAYGqTGSGKTyTM 115 (814)
....++.+|++|+|||+++
T Consensus 18 ~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3446788999999999755
No 147
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=82.28 E-value=88 Score=34.79 Aligned_cols=82 Identities=20% Similarity=0.195 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHhhhhhHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 003511 480 DEAGINYQKEIEENESRRCELQKMIDEAVSSN--GNKTYLRILSQYRILGMANIELQFEMAMRDQVIHNQRAAQRQLWNL 557 (814)
Q Consensus 480 ~e~~~~~q~eie~~e~~~~~Le~~l~~~i~~~--~~~~~~~lL~k~~~l~~~~~elq~e~~~r~~~I~~~r~~~~~lW~~ 557 (814)
...+.++..++..+..+...+.+.+.++.+.- -...+..+..+..++.....+|+.++.-....|.+.++.++.+-+-
T Consensus 157 ~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~e 236 (294)
T COG1340 157 NEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNE 236 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33445566777777777777777777555432 1233445555556666777778887766666666666666666666
Q ss_pred HHhc
Q 003511 558 LMRS 561 (814)
Q Consensus 558 l~~~ 561 (814)
|..+
T Consensus 237 lre~ 240 (294)
T COG1340 237 LREL 240 (294)
T ss_pred HHHH
Confidence 6555
No 148
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=82.03 E-value=57 Score=32.40 Aligned_cols=13 Identities=15% Similarity=0.136 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 003511 493 NESRRCELQKMID 505 (814)
Q Consensus 493 ~e~~~~~Le~~l~ 505 (814)
+..+...|+++|.
T Consensus 78 l~rriq~LEeele 90 (143)
T PF12718_consen 78 LNRRIQLLEEELE 90 (143)
T ss_pred HHhhHHHHHHHHH
Confidence 3333333333333
No 149
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=82.02 E-value=1.3 Score=45.96 Aligned_cols=48 Identities=19% Similarity=0.342 Sum_probs=30.8
Q ss_pred cceeeeeeecCCCCCcHHHHHHHHhhhHhhhccCcceEEEeeccCCCCcceee
Q 003511 63 EKNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 63 ~k~F~FD~VF~~~atQeeVy~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM 115 (814)
...|+||..+... ++.+. ..+..++.. .+.+..|+-||++|+||||.+
T Consensus 12 ~~~~~~d~f~~~~--~~~~~-~~l~~~~~~--~~~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 12 PPPPTFDNFVAGE--NAELV-ARLRELAAG--PVADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred CChhhhcccccCC--cHHHH-HHHHHHHhc--cCCCCeEEEECCCCCCHHHHH
Confidence 4568999988322 23343 334444442 233457889999999999865
No 150
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=82.00 E-value=1.2 Score=50.16 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=16.9
Q ss_pred cCcceEEEeeccCCCCcceee
Q 003511 95 QGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 95 ~GyN~tIfAYGqTGSGKTyTM 115 (814)
.+....++-||++|+|||+++
T Consensus 52 ~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 52 GSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 344566889999999999865
No 151
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=81.93 E-value=1.3e+02 Score=37.79 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=16.4
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHhc
Q 003511 533 LQFEMAMRDQVIHNQRAAQRQLWNLLMRS 561 (814)
Q Consensus 533 lq~e~~~r~~~I~~~r~~~~~lW~~l~~~ 561 (814)
+|..+.+++..|....++++.+-+=+..+
T Consensus 229 lq~~ie~Kd~ki~~lEr~l~~le~Ei~~L 257 (775)
T PF10174_consen 229 LQTVIEEKDTKIASLERMLRDLEDEIYRL 257 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666655555544444433
No 152
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=81.71 E-value=84 Score=34.16 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003511 484 INYQKEIEENESRRCELQ 501 (814)
Q Consensus 484 ~~~q~eie~~e~~~~~Le 501 (814)
..+++.|.+++....-||
T Consensus 108 eql~kyiReLEQaNDdLE 125 (333)
T KOG1853|consen 108 EQLRKYIRELEQANDDLE 125 (333)
T ss_pred HHHHHHHHHHHHhccHHH
Confidence 334444554444433333
No 153
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=81.67 E-value=1.5e+02 Score=36.93 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=31.6
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHh
Q 003511 532 ELQFEMAMRDQVIHNQRAAQRQLWNLLMRSGVDEKHLLDLAAK 574 (814)
Q Consensus 532 elq~e~~~r~~~I~~~r~~~~~lW~~l~~~~~~~~~~~~~~~~ 574 (814)
++..+..+....|+++|......-..|..-|=+...-+.+.|+
T Consensus 637 ~~Ere~t~~rD~l~~~r~~ld~qI~RLsqP~GseD~RL~~LAe 679 (1480)
T COG3096 637 EREREATVERDELGARKNALDEEIERLSQPGGSEDQRLNALAE 679 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHH
Confidence 3445667777777888877888888888888888877765554
No 154
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=81.12 E-value=40 Score=33.14 Aligned_cols=29 Identities=7% Similarity=0.252 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHhcCcee
Q 003511 545 HNQRAAQRQLWNLLMRSGVDEKHLLDLAAKHGITI 579 (814)
Q Consensus 545 ~~~r~~~~~lW~~l~~~~~~~~~~~~~~~~~~~~~ 579 (814)
.++.+++..+|..+... |.++|+++|+++
T Consensus 105 ~~~~~~~~~i~~~i~~~------v~~~a~~~g~~~ 133 (158)
T PF03938_consen 105 QEEQELLQPIQKKINKA------VEEYAKENGYDL 133 (158)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHHTT-SE
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHcCCeE
Confidence 33446788888888655 779999999875
No 155
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=80.93 E-value=33 Score=41.14 Aligned_cols=18 Identities=39% Similarity=0.733 Sum_probs=13.1
Q ss_pred cCcceEEEeeccCCCCcceee
Q 003511 95 QGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 95 ~GyN~tIfAYGqTGSGKTyTM 115 (814)
.|+|+ -+|.||||||-.|
T Consensus 22 ~g~~v---itG~nGaGKS~ll 39 (563)
T TIGR00634 22 RGLTV---LTGETGAGKSMII 39 (563)
T ss_pred CCeEE---EECCCCCCHHHHH
Confidence 45443 5699999998655
No 156
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=80.91 E-value=76 Score=33.16 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 003511 463 EALKSRRQIILDNIRENDEAGINYQKEIE 491 (814)
Q Consensus 463 e~l~~~~q~l~~~~~~~~e~~~~~q~eie 491 (814)
+.|..+...+...+.+.+..+..+...++
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek~le 149 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEKQLE 149 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555544444444
No 157
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=80.79 E-value=77 Score=33.15 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Q 003511 364 SDYQRMIDNLQIEVCRLKKELAD 386 (814)
Q Consensus 364 ~~~~~~I~~L~~Ei~~Lk~eL~~ 386 (814)
.++-.-|++|+.-..+|..+...
T Consensus 4 ~dL~~~v~dL~~~n~~L~~en~k 26 (193)
T PF14662_consen 4 SDLLSCVEDLQLNNQKLADENAK 26 (193)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHH
Confidence 46677788888888888877554
No 158
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=80.79 E-value=27 Score=38.95 Aligned_cols=11 Identities=18% Similarity=-0.037 Sum_probs=6.9
Q ss_pred cCceecccccC
Q 003511 575 HGITIEDWSMD 585 (814)
Q Consensus 575 ~~~~~e~~~~~ 585 (814)
+.-||.|-++-
T Consensus 149 ~fGTINGlRLG 159 (314)
T PF04111_consen 149 PFGTINGLRLG 159 (314)
T ss_dssp TEEEETTEEE-
T ss_pred CeeeECCeeec
Confidence 45678877665
No 159
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=80.70 E-value=1.3e+02 Score=35.76 Aligned_cols=31 Identities=23% Similarity=0.119 Sum_probs=17.9
Q ss_pred hhhhhHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 003511 525 ILGMANIELQFEMAMRDQVIHNQRAAQRQLW 555 (814)
Q Consensus 525 ~l~~~~~elq~e~~~r~~~I~~~r~~~~~lW 555 (814)
.+.++..|||..-+-.++.+++-.+..+++.
T Consensus 272 ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 272 QLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555666666666656666665555455443
No 160
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=80.51 E-value=95 Score=35.97 Aligned_cols=23 Identities=22% Similarity=0.078 Sum_probs=16.9
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHH
Q 003511 535 FEMAMRDQVIHNQRAAQRQLWNL 557 (814)
Q Consensus 535 ~e~~~r~~~I~~~r~~~~~lW~~ 557 (814)
.+..+|....+.||..++.|-+.
T Consensus 286 Ee~~~reen~rlQrkL~~e~erR 308 (552)
T KOG2129|consen 286 EEVDHREENERLQRKLINELERR 308 (552)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888777777665
No 161
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=80.17 E-value=2e+02 Score=37.64 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Q 003511 364 SDYQRMIDNLQIEVCRLKKELAD 386 (814)
Q Consensus 364 ~~~~~~I~~L~~Ei~~Lk~eL~~ 386 (814)
.+|++.|++...++.+++++|..
T Consensus 68 ~~~~~~i~~ap~~~~~~~~~l~~ 90 (1109)
T PRK10929 68 KQYQQVIDNFPKLSAELRQQLNN 90 (1109)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHh
Confidence 45666777777777777777664
No 162
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=80.09 E-value=1.7 Score=44.67 Aligned_cols=47 Identities=21% Similarity=0.460 Sum_probs=31.0
Q ss_pred cceeeeeeecCCCCCcHHHHHHHHhhhHhhhccCcceEEEeeccCCCCcceee
Q 003511 63 EKNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 63 ~k~F~FD~VF~~~atQeeVy~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM 115 (814)
...|+||.... + .+..+++. +..++. .+....|+-||++|+||||..
T Consensus 9 ~~~~~~~~~~~-~-~~~~~~~~-l~~~~~---~~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 9 PDDPTFDNFYA-G-GNAELLAA-LRQLAA---GKGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCchhhcCcCc-C-CcHHHHHH-HHHHHh---cCCCCeEEEECCCCCCHHHHH
Confidence 44688887763 2 44555543 333322 455678999999999999866
No 163
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=80.01 E-value=43 Score=35.92 Aligned_cols=39 Identities=10% Similarity=0.012 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 467 SRRQIILDNIRENDEAGINYQKEIEENESRRCELQKMID 505 (814)
Q Consensus 467 ~~~q~l~~~~~~~~e~~~~~q~eie~~e~~~~~Le~~l~ 505 (814)
..++.|+++.....+.+.....+|..++....+++.+..
T Consensus 39 kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~ 77 (230)
T PF10146_consen 39 KEMEELLQERMAHVEELRQINQDINTLENIIKQAESERN 77 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444555554444444444433
No 164
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=79.96 E-value=2.1 Score=46.10 Aligned_cols=130 Identities=23% Similarity=0.281 Sum_probs=72.0
Q ss_pred eeeeeeecCCCCCcHHHHHHHHhhhHhhhccCcce-EEEeeccCCCCcceeeccCCCCCCchhhhHHHHHHHHhhcCCCC
Q 003511 65 NYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNA-TVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTIFDLIKKDKNSD 143 (814)
Q Consensus 65 ~F~FD~VF~~~atQeeVy~~~v~plV~~vl~GyN~-tIfAYGqTGSGKTyTM~G~~~~~GIIpral~~LF~~i~~~~~~~ 143 (814)
...+|...+-+...+.+.+.+ ..+++|..+ -++.||..|||||.++ ..|........
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt-----~~Fl~G~pannvLL~G~rGtGKSSlV--------------kall~~y~~~G--- 80 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENT-----EQFLQGLPANNVLLWGARGTGKSSLV--------------KALLNEYADQG--- 80 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHH-----HHHHcCCCCcceEEecCCCCCHHHHH--------------HHHHHHHhhcC---
Confidence 345566665554444444432 566777754 3667999999998765 44444443322
Q ss_pred eEEEEEEEEEEecceeeeccccccCcceeeecCCC-CeeecCeEEEE-ecChHHHHHHHHhhhhcCCCccccCCCCCCCC
Q 003511 144 EFEVSCSYLEVYNEVIYDLLEKSSAHLELREDPMH-GIVVAGLRCIK-VHSADKILELLNLGNSRRKTENTEANGTSSRS 221 (814)
Q Consensus 144 ~f~VsvSylEIYnE~I~DLL~~~~~~L~ired~~~-g~~V~gLtev~-V~S~ee~~~lL~~G~~~R~~~~T~~N~~SSRS 221 (814)
+-.+||..+.+.||-.--. .++..+.. =+++.+|+--. =.++..+..+|+-|...| ....-..++|.|-
T Consensus 81 -----LRlIev~k~~L~~l~~l~~---~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyATSNRR 151 (249)
T PF05673_consen 81 -----LRLIEVSKEDLGDLPELLD---LLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYATSNRR 151 (249)
T ss_pred -----ceEEEECHHHhccHHHHHH---HHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEecchh
Confidence 4578888887777632100 00111111 12333443111 134666777777776555 5556667777777
Q ss_pred eEEE
Q 003511 222 HAVL 225 (814)
Q Consensus 222 HaIf 225 (814)
|.|=
T Consensus 152 HLv~ 155 (249)
T PF05673_consen 152 HLVP 155 (249)
T ss_pred hccc
Confidence 7764
No 165
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=79.90 E-value=1.1e+02 Score=34.49 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhhHHHHHHHHHHhHhHHHHHH
Q 003511 482 AGINYQKEIEENESRRCELQKMIDEAVSSNGNKTYLRILSQYRILGMANIELQFEMAMRDQVIHNQR 548 (814)
Q Consensus 482 ~~~~~q~eie~~e~~~~~Le~~l~~~i~~~~~~~~~~lL~k~~~l~~~~~elq~e~~~r~~~I~~~r 548 (814)
++..++.+..+.+++-.+|-.+|++++.. + ..+.+.|.. .-.|-..-+..|+--|.+.+
T Consensus 149 qL~~l~~e~~Ekeeesq~LnrELaE~lay---q--q~L~~eyQa---tf~eq~~ml~kRQ~yI~~LE 207 (401)
T PF06785_consen 149 QLDALQQECGEKEEESQTLNRELAEALAY---Q--QELNDEYQA---TFVEQHSMLDKRQAYIGKLE 207 (401)
T ss_pred hHHHHHHHHhHhHHHHHHHHHHHHHHHHH---H--HHHHHHhhc---ccccchhhhHHHHHHHHHHH
Confidence 44455666666666667777777766542 1 122333322 33333444566666666644
No 166
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=79.78 E-value=1.9e+02 Score=37.11 Aligned_cols=55 Identities=15% Similarity=0.098 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhcccchHHHHHH
Q 003511 514 KTYLRILSQYRILGMANIELQFEMAMRDQVIHNQRAAQRQLWNLLMRSGVDEKHLLDL 571 (814)
Q Consensus 514 ~~~~~lL~k~~~l~~~~~elq~e~~~r~~~I~~~r~~~~~lW~~l~~~~~~~~~~~~~ 571 (814)
.+.-+++.-++.+..+-.|++..+--....|++...++.++-+..--+ +.++...
T Consensus 467 e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~el---keQ~kt~ 521 (1195)
T KOG4643|consen 467 EELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNEL---KEQYKTC 521 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 344466666677777777777776666677777777666665555444 4444433
No 167
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=79.78 E-value=61 Score=31.39 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=15.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhc
Q 003511 362 HVSDYQRMIDNLQIEVCRLKKELAD 386 (814)
Q Consensus 362 ~~~~~~~~I~~L~~Ei~~Lk~eL~~ 386 (814)
.+..+.+.|+.++.|+..|+.++..
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~ 41 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELAR 41 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777776666554
No 168
>PRK08181 transposase; Validated
Probab=79.09 E-value=1.3 Score=48.14 Aligned_cols=21 Identities=29% Similarity=0.638 Sum_probs=17.3
Q ss_pred cCcceEEEeeccCCCCcceeecc
Q 003511 95 QGLNATVFAYGSTGSGKTYTMVG 117 (814)
Q Consensus 95 ~GyN~tIfAYGqTGSGKTyTM~G 117 (814)
.|.| |+-||++|+||||.+.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHH
Confidence 5555 78999999999998755
No 169
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=79.06 E-value=2.6e+02 Score=38.28 Aligned_cols=56 Identities=11% Similarity=0.196 Sum_probs=30.2
Q ss_pred CChHHHHHHHHHHHHHhhcccccccccccccccchHHHHHHHHHHHHHHHHHHHHhccC
Q 003511 330 SQYHHTLNTLKYADRAKKIKTHIQKNIGSIDTHVSDYQRMIDNLQIEVCRLKKELADKD 388 (814)
Q Consensus 330 ~~~eETlsTLrfA~Rak~Ikn~~~~N~~~~~~~~~~~~~~I~~L~~Ei~~Lk~eL~~~~ 388 (814)
...+.-.+-+.|-.+=+.|...-.- + ....-..+...+..++..+..|+..|...+
T Consensus 1146 ~g~sdL~~iv~~LR~Ekei~~tk~~-~--lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r 1201 (1822)
T KOG4674|consen 1146 LGLSDLQNIVSFLRKEKEIAETKLD-T--LKRENARLKQQVASLNRTIDDLQRSLTAER 1201 (1822)
T ss_pred cchHHHHHHHHHHHhHHHHHhhhHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355667778888888877532110 0 011112345556666666666666665443
No 170
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=78.89 E-value=1.2e+02 Score=37.81 Aligned_cols=14 Identities=7% Similarity=0.207 Sum_probs=7.9
Q ss_pred CCceEEEEEeCCCC
Q 003511 12 STTLTVAIKCRPLT 25 (814)
Q Consensus 12 ~~~IkV~VRvRPl~ 25 (814)
+++..+.+|.-|+.
T Consensus 124 ~g~~~i~Crt~~v~ 137 (717)
T PF10168_consen 124 DGKKEINCRTVPVD 137 (717)
T ss_pred CCCcceeEEEEEec
Confidence 44556666665553
No 171
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=78.45 E-value=44 Score=40.83 Aligned_cols=17 Identities=18% Similarity=0.419 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 003511 369 MIDNLQIEVCRLKKELA 385 (814)
Q Consensus 369 ~I~~L~~Ei~~Lk~eL~ 385 (814)
.+..++.|+..+..+|.
T Consensus 399 ~~~~~e~el~~l~~~l~ 415 (650)
T TIGR03185 399 ELRELEEELAEVDKKIS 415 (650)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444444444444443
No 172
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=78.34 E-value=74 Score=35.84 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcc
Q 003511 364 SDYQRMIDNLQIEVCRLKKELADK 387 (814)
Q Consensus 364 ~~~~~~I~~L~~Ei~~Lk~eL~~~ 387 (814)
..-+...++|+...++|+.+|-..
T Consensus 95 ~e~q~e~~qL~~qnqkL~nqL~~~ 118 (401)
T PF06785_consen 95 EERQQESEQLQSQNQKLKNQLFHV 118 (401)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344455667777777777776543
No 173
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=78.21 E-value=32 Score=42.07 Aligned_cols=38 Identities=21% Similarity=0.140 Sum_probs=31.7
Q ss_pred HHHHhhhhhHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 003511 521 SQYRILGMANIELQFEMAMRDQVIHNQRAAQRQLWNLL 558 (814)
Q Consensus 521 ~k~~~l~~~~~elq~e~~~r~~~I~~~r~~~~~lW~~l 558 (814)
.+..++.....+||.+...|-..+-+.+..+..+|..|
T Consensus 160 ~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~L 197 (660)
T KOG4302|consen 160 EKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVL 197 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666888999999999999999999899999876
No 174
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=77.80 E-value=1.9e+02 Score=36.06 Aligned_cols=34 Identities=21% Similarity=0.394 Sum_probs=17.4
Q ss_pred CcceeeecCCCC--e---eecCeEEEEecChHHHHHHHH
Q 003511 168 AHLELREDPMHG--I---VVAGLRCIKVHSADKILELLN 201 (814)
Q Consensus 168 ~~L~ired~~~g--~---~V~gLtev~V~S~ee~~~lL~ 201 (814)
.++.+..|+... + +-.|+..+.+.=...+..++.
T Consensus 367 cpI~L~~Dp~~~~ryy~~H~~GvH~V~L~wl~~L~~fl~ 405 (717)
T PF10168_consen 367 CPIRLHRDPLNPDRYYCYHNAGVHSVTLPWLSALQEFLE 405 (717)
T ss_pred cceEEEecCCCCceEEEEecCccEEEEeccHHHHHHHhc
Confidence 356666666432 2 234666677654444444443
No 175
>PRK08939 primosomal protein DnaI; Reviewed
Probab=77.71 E-value=1.2 Score=49.29 Aligned_cols=52 Identities=19% Similarity=0.274 Sum_probs=32.7
Q ss_pred eeeeeeecCCCCCcHHHHHHHHhhhHhhhccC-cceEEEeeccCCCCcceeecc
Q 003511 65 NYCFDRAFGPGCTNLDVYTACISSVISGVVQG-LNATVFAYGSTGSGKTYTMVG 117 (814)
Q Consensus 65 ~F~FD~VF~~~atQeeVy~~~v~plV~~vl~G-yN~tIfAYGqTGSGKTyTM~G 117 (814)
..+||.+-..+..+..++.. +...++....| ..-.++-||++|+||||.+.+
T Consensus 123 ~atf~~~~~~~~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred cCcHHHhcCCChHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 34565543333355566654 45666665543 234689999999999998754
No 176
>PRK08727 hypothetical protein; Validated
Probab=77.55 E-value=1.6 Score=46.18 Aligned_cols=45 Identities=18% Similarity=0.308 Sum_probs=26.5
Q ss_pred cceeeeeeecCCCCCcHHHHHHHHhhhHhhhccCc-ceEEEeeccCCCCcceee
Q 003511 63 EKNYCFDRAFGPGCTNLDVYTACISSVISGVVQGL-NATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 63 ~k~F~FD~VF~~~atQeeVy~~~v~plV~~vl~Gy-N~tIfAYGqTGSGKTyTM 115 (814)
...|+||.-+..++ + .... +..+. .|. .-.|+-||++|+||||.+
T Consensus 13 ~~~~~f~~f~~~~~-n--~~~~-~~~~~----~~~~~~~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 13 PSDQRFDSYIAAPD-G--LLAQ-LQALA----AGQSSDWLYLSGPAGTGKTHLA 58 (233)
T ss_pred CCcCChhhccCCcH-H--HHHH-HHHHH----hccCCCeEEEECCCCCCHHHHH
Confidence 34578888664333 2 2221 12221 122 234899999999999976
No 177
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=77.30 E-value=1.9e+02 Score=35.67 Aligned_cols=33 Identities=12% Similarity=0.175 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhc
Q 003511 529 ANIELQFEMAMRDQVIHNQRAAQRQLWNLLMRS 561 (814)
Q Consensus 529 ~~~elq~e~~~r~~~I~~~r~~~~~lW~~l~~~ 561 (814)
....|+++....++++..+.++-+.+-+-+...
T Consensus 496 ~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~ 528 (961)
T KOG4673|consen 496 LITKLQSEENKLKSILRDKEETEKLLQETIEKH 528 (961)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 566789999999999999988777777766555
No 178
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=77.05 E-value=0.86 Score=41.40 Aligned_cols=17 Identities=41% Similarity=0.468 Sum_probs=14.7
Q ss_pred EEeeccCCCCcceeecc
Q 003511 101 VFAYGSTGSGKTYTMVG 117 (814)
Q Consensus 101 IfAYGqTGSGKTyTM~G 117 (814)
++.+|+||+|||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 56789999999999865
No 179
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=76.76 E-value=2e+02 Score=35.67 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=14.3
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHhc
Q 003511 360 DTHVSDYQRMIDNLQIEVCRLKKELAD 386 (814)
Q Consensus 360 ~~~~~~~~~~I~~L~~Ei~~Lk~eL~~ 386 (814)
+..+.........|+..++.+..+|..
T Consensus 104 da~lrq~eekn~slqerLelaE~~l~q 130 (916)
T KOG0249|consen 104 DADLRQNEEKNRSLQERLELAEPKLQQ 130 (916)
T ss_pred chhhchhHHhhhhhhHHHHHhhHhhHh
Confidence 334444455555566666555555544
No 180
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=76.61 E-value=2.4e+02 Score=36.50 Aligned_cols=20 Identities=15% Similarity=0.109 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHhc
Q 003511 542 QVIHNQRAAQRQLWNLLMRS 561 (814)
Q Consensus 542 ~~I~~~r~~~~~lW~~l~~~ 561 (814)
.+-.+..+.+..+|..++..
T Consensus 571 ~~~~~l~~~~~~~~~~v~~~ 590 (1041)
T KOG0243|consen 571 DFQSQLSENLSTLHGLVASS 590 (1041)
T ss_pred HHhhhhhHHHHHHHHHHhhh
Confidence 33334445566666666554
No 181
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=76.38 E-value=1.6e+02 Score=34.44 Aligned_cols=19 Identities=11% Similarity=0.102 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 003511 369 MIDNLQIEVCRLKKELADK 387 (814)
Q Consensus 369 ~I~~L~~Ei~~Lk~eL~~~ 387 (814)
.++-|+.++.+++.+|...
T Consensus 162 ~~~fl~~ql~~~~~~L~~a 180 (498)
T TIGR03007 162 AQRFIDEQIKTYEKKLEAA 180 (498)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555543
No 182
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=76.30 E-value=2.4e+02 Score=36.33 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=12.6
Q ss_pred EEEEecChHHHHHHHHhhhhcCC
Q 003511 186 RCIKVHSADKILELLNLGNSRRK 208 (814)
Q Consensus 186 tev~V~S~ee~~~lL~~G~~~R~ 208 (814)
-.+.|.+..-.-+||++|.-.|.
T Consensus 549 ynvVv~te~tgkqLLq~g~l~rR 571 (1174)
T KOG0933|consen 549 YNVVVDTEDTGKQLLQRGNLRRR 571 (1174)
T ss_pred eeEEeechHHHHHHhhcccccce
Confidence 34455555555566666655553
No 183
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=76.28 E-value=35 Score=35.29 Aligned_cols=13 Identities=23% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 003511 370 IDNLQIEVCRLKK 382 (814)
Q Consensus 370 I~~L~~Ei~~Lk~ 382 (814)
+..|..+...|..
T Consensus 33 ~~~l~~~~~~l~~ 45 (194)
T PF08614_consen 33 TSLLKAENEQLQP 45 (194)
T ss_dssp -------------
T ss_pred ccccccccccccc
Confidence 3444444444444
No 184
>PRK10436 hypothetical protein; Provisional
Probab=76.23 E-value=1.1 Score=52.56 Aligned_cols=28 Identities=32% Similarity=0.436 Sum_probs=22.6
Q ss_pred hHhhhccCcceEEEeeccCCCCcceeec
Q 003511 89 VISGVVQGLNATVFAYGSTGSGKTYTMV 116 (814)
Q Consensus 89 lV~~vl~GyN~tIfAYGqTGSGKTyTM~ 116 (814)
.+..++..-++.|+..|+||||||.||+
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 3445566677889999999999999984
No 185
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=76.15 E-value=1.5 Score=50.44 Aligned_cols=51 Identities=27% Similarity=0.387 Sum_probs=31.5
Q ss_pred cceeeeeeecCCCCCcHHHHHHHHhhhHhhhccCcceEEEeeccCCCCcceeec
Q 003511 63 EKNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMV 116 (814)
Q Consensus 63 ~k~F~FD~VF~~~atQeeVy~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 116 (814)
...|+||.-.... ++.-.|. .+..+-+..-.-|| -||-||.+|+||||.|.
T Consensus 81 ~~~ytFdnFv~g~-~N~~A~a-a~~~va~~~g~~~n-plfi~G~~GlGKTHLl~ 131 (408)
T COG0593 81 NPKYTFDNFVVGP-SNRLAYA-AAKAVAENPGGAYN-PLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCCchhheeeCC-chHHHHH-HHHHHHhccCCcCC-cEEEECCCCCCHHHHHH
Confidence 4579999865433 4444552 23333332212255 47899999999999883
No 186
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=76.08 E-value=3.2 Score=52.03 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=17.2
Q ss_pred cCcceEEEeeccCCCCcceee
Q 003511 95 QGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 95 ~GyN~tIfAYGqTGSGKTyTM 115 (814)
.|-+.+||.||++|+|||.|+
T Consensus 778 sgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 778 SGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred CCCCceEEEECCCCCCHHHHH
Confidence 345567889999999999876
No 187
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=75.88 E-value=1e+02 Score=38.40 Aligned_cols=35 Identities=11% Similarity=0.176 Sum_probs=28.7
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHhcccchHHHHHH
Q 003511 537 MAMRDQVIHNQRAAQRQLWNLLMRSGVDEKHLLDL 571 (814)
Q Consensus 537 ~~~r~~~I~~~r~~~~~lW~~l~~~~~~~~~~~~~ 571 (814)
-.++..|+.-.+++...+-.++...||.-+.++..
T Consensus 600 ~~lkeki~~~~~Ei~~eie~v~~S~gL~~~~~~k~ 634 (762)
T PLN03229 600 DDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKK 634 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhh
Confidence 46788888888888889999999999988866643
No 188
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=75.77 E-value=1.1 Score=53.69 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=23.1
Q ss_pred hHhhhccCcceEEEeeccCCCCcceeec
Q 003511 89 VISGVVQGLNATVFAYGSTGSGKTYTMV 116 (814)
Q Consensus 89 lV~~vl~GyN~tIfAYGqTGSGKTyTM~ 116 (814)
.+..++..-++.|+..|+||||||.||.
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~ 334 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLY 334 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 3456667778899999999999999984
No 189
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=75.47 E-value=1.1e+02 Score=34.50 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=12.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhcc
Q 003511 363 VSDYQRMIDNLQIEVCRLKKELADK 387 (814)
Q Consensus 363 ~~~~~~~I~~L~~Ei~~Lk~eL~~~ 387 (814)
+..++..+.+++.++.-|+..++..
T Consensus 88 v~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 88 VEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHhh
Confidence 3344455555555555555555443
No 190
>PF13245 AAA_19: Part of AAA domain
Probab=75.41 E-value=1.3 Score=39.09 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=17.3
Q ss_pred HhhhccCcceEEEeeccCCCCcceeec
Q 003511 90 ISGVVQGLNATVFAYGSTGSGKTYTMV 116 (814)
Q Consensus 90 V~~vl~GyN~tIfAYGqTGSGKTyTM~ 116 (814)
|...+. -+..++.-|+.|||||+|+.
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence 344445 23334458999999999874
No 191
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=75.35 E-value=2.4 Score=45.67 Aligned_cols=51 Identities=18% Similarity=0.133 Sum_probs=34.2
Q ss_pred ceeeeeeecCCCCCcHHHHHHHHhhhHhhhccCcceEEEeeccCCCCcceeecc
Q 003511 64 KNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVG 117 (814)
Q Consensus 64 k~F~FD~VF~~~atQeeVy~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM~G 117 (814)
++|.|..+-.....+..++.. +..+++.+-+|.| ++-||++|+||||...+
T Consensus 74 k~~~~~d~~~~~~~~~~~l~~-~~~~~~~~~~~~n--l~l~G~~G~GKThLa~A 124 (254)
T COG1484 74 KTFEEFDFEFQPGIDKKALED-LASLVEFFERGEN--LVLLGPPGVGKTHLAIA 124 (254)
T ss_pred CCcccccccCCcchhHHHHHH-HHHHHHHhccCCc--EEEECCCCCcHHHHHHH
Confidence 556655554555567778854 5666666554444 56799999999997643
No 192
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=75.28 E-value=1.2e+02 Score=32.35 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 003511 369 MIDNLQIEVCRLKKELAD 386 (814)
Q Consensus 369 ~I~~L~~Ei~~Lk~eL~~ 386 (814)
.|..|+.++...+..+..
T Consensus 2 K~~~l~~eld~~~~~~~~ 19 (237)
T PF00261_consen 2 KIQQLKDELDEAEERLEE 19 (237)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 466777777777666543
No 193
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=74.98 E-value=2.6e+02 Score=36.04 Aligned_cols=38 Identities=26% Similarity=0.469 Sum_probs=24.4
Q ss_pred EeeccCCCCcceeec----cCCCCCCchhhhHHHHHHHHhhcC
Q 003511 102 FAYGSTGSGKTYTMV----GTKSDPGLMVLSLHTIFDLIKKDK 140 (814)
Q Consensus 102 fAYGqTGSGKTyTM~----G~~~~~GIIpral~~LF~~i~~~~ 140 (814)
|..|+.||||+..+. |-...|-++.|+ ..+=..|....
T Consensus 46 mIiGpNGSGKSSiVcAIcLglgG~Pk~lGRa-k~VgeyIK~G~ 87 (1072)
T KOG0979|consen 46 MIIGPNGSGKSSIVCAICLGLGGKPKLLGRA-KKVGEYIKRGE 87 (1072)
T ss_pred eEECCCCCCchHHHHHHHHHcCCChhhccch-hHHHHHHhcCC
Confidence 566999999998764 345667777776 33334454433
No 194
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=74.83 E-value=1.1e+02 Score=31.92 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 003511 365 DYQRMIDNLQIEVCRLKKELA 385 (814)
Q Consensus 365 ~~~~~I~~L~~Ei~~Lk~eL~ 385 (814)
+++.--+.|..|+..|+..+.
T Consensus 12 dL~~~n~~L~~en~kL~~~ve 32 (193)
T PF14662_consen 12 DLQLNNQKLADENAKLQRSVE 32 (193)
T ss_pred HHHHHhHHHHHHHHHHHHHHH
Confidence 333334445555555554443
No 195
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=74.53 E-value=2.2e+02 Score=37.30 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=21.5
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhcC
Q 003511 536 EMAMRDQVIHNQRAAQRQLWNLLMRSGVDEKHLLDLAAKHG 576 (814)
Q Consensus 536 e~~~r~~~I~~~r~~~~~lW~~l~~~~~~~~~~~~~~~~~~ 576 (814)
.+..|..++.+.-+....+=..+..+-+++.|+.+...+-.
T Consensus 384 ll~~rr~LL~~L~~~~~~~l~~l~~L~~~q~QL~~~~~~l~ 424 (1109)
T PRK10929 384 QLRTQRELLNSLLSGGDTLILELTKLKVANSQLEDALKEVN 424 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554455555555555566666665444444
No 196
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=74.43 E-value=95 Score=30.81 Aligned_cols=39 Identities=15% Similarity=0.307 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003511 463 EALKSRRQIILDNIRENDEAGINYQKEIEENESRRCELQ 501 (814)
Q Consensus 463 e~l~~~~q~l~~~~~~~~e~~~~~q~eie~~e~~~~~Le 501 (814)
+.|..+.+.+-+.+...+..+......+++...+..+++
T Consensus 76 E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~e 114 (143)
T PF12718_consen 76 EQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFE 114 (143)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 445555555555555444444444444443333333333
No 197
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=74.35 E-value=89 Score=37.88 Aligned_cols=16 Identities=13% Similarity=0.202 Sum_probs=10.0
Q ss_pred CchhhhHHHHHHHHhh
Q 003511 123 GLMVLSLHTIFDLIKK 138 (814)
Q Consensus 123 GIIpral~~LF~~i~~ 138 (814)
|.|.++...|=+.+..
T Consensus 164 ~av~~~~reIee~L~~ 179 (652)
T COG2433 164 GAVKRVVREIEEKLDE 179 (652)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5666666666666654
No 198
>PRK11281 hypothetical protein; Provisional
Probab=74.33 E-value=1.6e+02 Score=38.57 Aligned_cols=16 Identities=13% Similarity=0.351 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 003511 489 EIEENESRRCELQKMI 504 (814)
Q Consensus 489 eie~~e~~~~~Le~~l 504 (814)
.+.+...+..+++.+|
T Consensus 164 ~lsea~~RlqeI~~~L 179 (1113)
T PRK11281 164 ALYANSQRLQQIRNLL 179 (1113)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444444
No 199
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=74.22 E-value=2.2e+02 Score=34.95 Aligned_cols=12 Identities=42% Similarity=0.780 Sum_probs=7.8
Q ss_pred CccccccCCCCC
Q 003511 799 SCIPSFDANGSN 810 (814)
Q Consensus 799 ~~~~~~~~~~~~ 810 (814)
.|||.|-.+.-|
T Consensus 598 pcipffy~~~~~ 609 (617)
T PF15070_consen 598 PCIPFFYRADEN 609 (617)
T ss_pred Ccccceeecccc
Confidence 588888665443
No 200
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.85 E-value=2.5e+02 Score=35.37 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 003511 364 SDYQRMIDNLQIEVCRLKKEL 384 (814)
Q Consensus 364 ~~~~~~I~~L~~Ei~~Lk~eL 384 (814)
.+|+.+|+.++-+++.||+..
T Consensus 660 ~kyK~lI~~lD~~~e~lkQ~~ 680 (970)
T KOG0946|consen 660 QKYKGLIRELDYQIENLKQME 680 (970)
T ss_pred HHHHHHHHHHhhHHHHHHHHH
Confidence 345566666666666665543
No 201
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=73.77 E-value=1.3 Score=40.14 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=14.6
Q ss_pred eEEEeeccCCCCcceee
Q 003511 99 ATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 99 ~tIfAYGqTGSGKTyTM 115 (814)
..++-+|++|||||+++
T Consensus 3 ~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 3 EVILIVGPPGSGKTTLA 19 (148)
T ss_pred CEEEEECCCCCcHHHHH
Confidence 35788999999999877
No 202
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=73.70 E-value=1.5 Score=42.49 Aligned_cols=26 Identities=38% Similarity=0.586 Sum_probs=19.3
Q ss_pred HhhhccCcceEEEeeccCCCCcceeecc
Q 003511 90 ISGVVQGLNATVFAYGSTGSGKTYTMVG 117 (814)
Q Consensus 90 V~~vl~GyN~tIfAYGqTGSGKTyTM~G 117 (814)
++.+++|.| ++..|+||+|||.....
T Consensus 8 ~~~i~~~~~--~li~aptGsGKT~~~~~ 33 (169)
T PF00270_consen 8 IEAIISGKN--VLISAPTGSGKTLAYIL 33 (169)
T ss_dssp HHHHHTTSE--EEEECSTTSSHHHHHHH
T ss_pred HHHHHcCCC--EEEECCCCCccHHHHHH
Confidence 344456666 67889999999988753
No 203
>PLN02939 transferase, transferring glycosyl groups
Probab=73.69 E-value=2.7e+02 Score=36.03 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHH-HHHHhhh----hhHHHHHHHHHHhHhHHHHHHH
Q 003511 490 IEENESRRCELQKMIDEAVSSNGNKTYLRIL-SQYRILG----MANIELQFEMAMRDQVIHNQRA 549 (814)
Q Consensus 490 ie~~e~~~~~Le~~l~~~i~~~~~~~~~~lL-~k~~~l~----~~~~elq~e~~~r~~~I~~~r~ 549 (814)
-+.++.+...|+..|.++.-++-.-+.+.++ .|.+.++ .-..|+++++.+.+.-|.+-++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (977)
T PLN02939 326 NQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQD 390 (977)
T ss_pred chHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777888888776665544555555 4555443 3445566666666665555444
No 204
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=73.68 E-value=1.5 Score=51.65 Aligned_cols=28 Identities=29% Similarity=0.461 Sum_probs=22.5
Q ss_pred hHhhhccCcceEEEeeccCCCCcceeec
Q 003511 89 VISGVVQGLNATVFAYGSTGSGKTYTMV 116 (814)
Q Consensus 89 lV~~vl~GyN~tIfAYGqTGSGKTyTM~ 116 (814)
.+..++..-++.|+..|+||||||.||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 3445666677788999999999999984
No 205
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=73.50 E-value=2.8e+02 Score=35.88 Aligned_cols=12 Identities=50% Similarity=0.792 Sum_probs=10.4
Q ss_pred eccCCCCcceee
Q 003511 104 YGSTGSGKTYTM 115 (814)
Q Consensus 104 YGqTGSGKTyTM 115 (814)
.||.||||+-.|
T Consensus 31 IGPNGSGKSNlM 42 (1141)
T KOG0018|consen 31 IGPNGSGKSNLM 42 (1141)
T ss_pred eCCCCCchHHHH
Confidence 399999998777
No 206
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=73.44 E-value=1.6e+02 Score=33.09 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003511 366 YQRMIDNLQIEVCRLKKEL 384 (814)
Q Consensus 366 ~~~~I~~L~~Ei~~Lk~eL 384 (814)
++..+..|+.++.+|+.++
T Consensus 79 ~~~~l~~l~~~~~~l~a~~ 97 (423)
T TIGR01843 79 VEADAAELESQVLRLEAEV 97 (423)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 3444555555555555444
No 207
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=73.22 E-value=1e+02 Score=36.02 Aligned_cols=26 Identities=12% Similarity=-0.064 Sum_probs=15.3
Q ss_pred HhhhhhHHHHHHHHHHhHhHHHHHHH
Q 003511 524 RILGMANIELQFEMAMRDQVIHNQRA 549 (814)
Q Consensus 524 ~~l~~~~~elq~e~~~r~~~I~~~r~ 549 (814)
...+....+||.++.=-+=.|..|.+
T Consensus 431 ~s~d~~I~dLqEQlrDlmf~le~qqk 456 (493)
T KOG0804|consen 431 GSKDEKITDLQEQLRDLMFFLEAQQK 456 (493)
T ss_pred HHHHHHHHHHHHHHHhHheehhhhhh
Confidence 34455666777776555555555555
No 208
>PF13514 AAA_27: AAA domain
Probab=73.03 E-value=3e+02 Score=35.99 Aligned_cols=13 Identities=31% Similarity=0.659 Sum_probs=11.8
Q ss_pred eeccCCCCcceee
Q 003511 103 AYGSTGSGKTYTM 115 (814)
Q Consensus 103 AYGqTGSGKTyTM 115 (814)
.||+.-+|||++|
T Consensus 1 IyGpNEAGKST~l 13 (1111)
T PF13514_consen 1 IYGPNEAGKSTLL 13 (1111)
T ss_pred CCCCCCCCHHHHH
Confidence 3999999999988
No 209
>PRK01156 chromosome segregation protein; Provisional
Probab=72.68 E-value=2.7e+02 Score=35.29 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=12.5
Q ss_pred EEEeeccCCCCcceee
Q 003511 100 TVFAYGSTGSGKTYTM 115 (814)
Q Consensus 100 tIfAYGqTGSGKTyTM 115 (814)
..+-+|++|||||..+
T Consensus 25 i~~I~G~NGsGKSsil 40 (895)
T PRK01156 25 INIITGKNGAGKSSIV 40 (895)
T ss_pred eEEEECCCCCCHHHHH
Confidence 3457799999998763
No 210
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=72.62 E-value=2.5e+02 Score=34.88 Aligned_cols=16 Identities=25% Similarity=0.152 Sum_probs=7.9
Q ss_pred HHHHHHHHHhcccchH
Q 003511 551 QRQLWNLLMRSGVDEK 566 (814)
Q Consensus 551 ~~~lW~~l~~~~~~~~ 566 (814)
..+|-.+|.+.|..-+
T Consensus 610 ~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 610 LERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHhccccc
Confidence 4445555555554433
No 211
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=72.47 E-value=1.4 Score=45.27 Aligned_cols=17 Identities=47% Similarity=0.702 Sum_probs=15.2
Q ss_pred eEEEeeccCCCCcceee
Q 003511 99 ATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 99 ~tIfAYGqTGSGKTyTM 115 (814)
+.|+-.|+||||||+++
T Consensus 2 GlilI~GptGSGKTTll 18 (198)
T cd01131 2 GLVLVTGPTGSGKSTTL 18 (198)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 57888999999999987
No 212
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=72.44 E-value=3.8e+02 Score=36.88 Aligned_cols=78 Identities=19% Similarity=0.165 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHhccchhHHHHHHHHHHhhhhhHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 003511 484 INYQKEIEENESRRCELQKMIDE--------AVSSNGNKTYLRILSQYRILGMANIELQFEMAMRDQVIHNQRAAQRQLW 555 (814)
Q Consensus 484 ~~~q~eie~~e~~~~~Le~~l~~--------~i~~~~~~~~~~lL~k~~~l~~~~~elq~e~~~r~~~I~~~r~~~~~lW 555 (814)
..++..++.+......|+..|.. ++.-.+-..++.....+..+.-.|..|+.+....-..|++.++.++.+-
T Consensus 1177 ~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~kl~ 1256 (1822)
T KOG4674|consen 1177 ARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQELRDKIEKLN 1256 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555552 1122234445555555555556777888887777778888888888877
Q ss_pred HHHHhc
Q 003511 556 NLLMRS 561 (814)
Q Consensus 556 ~~l~~~ 561 (814)
.-++-+
T Consensus 1257 ~el~pl 1262 (1822)
T KOG4674|consen 1257 FELAPL 1262 (1822)
T ss_pred hhHhhH
Confidence 777766
No 213
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=72.37 E-value=2.5 Score=46.99 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=27.0
Q ss_pred CCCCcHHHHHHHHhhhHhhhccCcc-eEEEeeccCCCCcceee
Q 003511 74 PGCTNLDVYTACISSVISGVVQGLN-ATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 74 ~~atQeeVy~~~v~plV~~vl~GyN-~tIfAYGqTGSGKTyTM 115 (814)
|.+.-+.++++.+..++.+.+.+.+ --.+-||+.|+|||.|.
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 3333344555555555555555533 34678999999999987
No 214
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=72.13 E-value=1.9e+02 Score=36.46 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=18.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 475 NIRENDEAGINYQKEIEENESRRCELQKMID 505 (814)
Q Consensus 475 ~~~~~~e~~~~~q~eie~~e~~~~~Le~~l~ 505 (814)
.++..+-.....+.+++.+..+...|+.+|.
T Consensus 660 ~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele 690 (769)
T PF05911_consen 660 SYESLETRLKDLEAEAEELQSKISSLEEELE 690 (769)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444555666677777777777766
No 215
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=72.11 E-value=1.3 Score=47.39 Aligned_cols=27 Identities=33% Similarity=0.603 Sum_probs=18.0
Q ss_pred hhHhhhccCcceEEEeeccCCCCcceee
Q 003511 88 SVISGVVQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 88 plV~~vl~GyN~tIfAYGqTGSGKTyTM 115 (814)
.++...+.+ .+.|+..|.||||||.+|
T Consensus 118 ~~l~~~v~~-~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 118 EFLRSAVRG-RGNILISGPTGSGKTTLL 144 (270)
T ss_dssp HHHHHCHHT-TEEEEEEESTTSSHHHHH
T ss_pred HHHhhcccc-ceEEEEECCCccccchHH
Confidence 333333333 345666799999999987
No 216
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=71.88 E-value=1.3 Score=41.40 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=12.6
Q ss_pred ceEEEeeccCCCCcceee
Q 003511 98 NATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 98 N~tIfAYGqTGSGKTyTM 115 (814)
..+++.+|++|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 356889999999999865
No 217
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=71.73 E-value=2.9 Score=48.77 Aligned_cols=50 Identities=22% Similarity=0.262 Sum_probs=32.7
Q ss_pred cceeeeeeecCCCCCcHHHHHHHHhhhHhhh--ccC--cceEEEeeccCCCCcceee
Q 003511 63 EKNYCFDRAFGPGCTNLDVYTACISSVISGV--VQG--LNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 63 ~k~F~FD~VF~~~atQeeVy~~~v~plV~~v--l~G--yN~tIfAYGqTGSGKTyTM 115 (814)
...|+||.-.-. .+++..| ..+..+.+.. ..| ||. +|-||++|+||||.+
T Consensus 105 ~~~~tFdnFv~g-~~N~~a~-~~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl 158 (445)
T PRK12422 105 DPLMTFANFLVT-PENDLPH-RILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLM 158 (445)
T ss_pred CccccccceeeC-CcHHHHH-HHHHHHHhccccccCCCCce-EEEEcCCCCCHHHHH
Confidence 467999986643 3555555 3455555432 223 454 678999999999977
No 218
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=71.63 E-value=1.8 Score=48.49 Aligned_cols=29 Identities=28% Similarity=0.481 Sum_probs=21.0
Q ss_pred hhHhhhccCcceEEEeeccCCCCcceeec
Q 003511 88 SVISGVVQGLNATVFAYGSTGSGKTYTMV 116 (814)
Q Consensus 88 plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 116 (814)
+.+..++.--.+.|+..|+||||||+||.
T Consensus 112 ~~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 112 PVLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 34444444345778899999999999883
No 219
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=70.93 E-value=1.9 Score=43.68 Aligned_cols=29 Identities=28% Similarity=0.458 Sum_probs=20.4
Q ss_pred hhhHhhhccCcceEEEeeccCCCCcceee
Q 003511 87 SSVISGVVQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 87 ~plV~~vl~GyN~tIfAYGqTGSGKTyTM 115 (814)
..+.+.+-.|.+..++.||+.|+|||+.|
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 34444444566788999999999999865
No 220
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=70.80 E-value=2.9 Score=48.07 Aligned_cols=52 Identities=19% Similarity=0.294 Sum_probs=34.1
Q ss_pred ceeeeeeecCCCCCcHHHHHHHHhhhHh-hhcc--C--cceEEEeeccCCCCcceee
Q 003511 64 KNYCFDRAFGPGCTNLDVYTACISSVIS-GVVQ--G--LNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 64 k~F~FD~VF~~~atQeeVy~~~v~plV~-~vl~--G--yN~tIfAYGqTGSGKTyTM 115 (814)
-..+|+.|-+.+..-+++-+.+..|+.. ..+. | ....|+-||++|+|||+..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 3567888877666556666555555553 2332 2 2356889999999999754
No 221
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=70.61 E-value=4.9 Score=46.81 Aligned_cols=99 Identities=19% Similarity=0.165 Sum_probs=45.4
Q ss_pred EEEEEeCCCCCCcCC--CCeEEEeCC-cEEEEECCCCCchhhhhccccCCcceeeeeeecCCCCCcHHHHHHHHhhhHhh
Q 003511 16 TVAIKCRPLTEREQG--RDIVRVKHD-KEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGPGCTNLDVYTACISSVISG 92 (814)
Q Consensus 16 kV~VRvRPl~~~E~~--~~~v~v~~~-~~Vvv~dp~~~~~~~~~~~~~~~~k~F~FD~VF~~~atQeeVy~~~v~plV~~ 92 (814)
..+|++.+..+++.- ...|.+.+. ..|+-+-|... +.......-...-.-+|+.|.+-+..-+++.+.+..|+...
T Consensus 128 ~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~-d~~~~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p 206 (438)
T PTZ00361 128 EYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEV-DPLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHP 206 (438)
T ss_pred EEEEeccCcCCHhhCCCCCEEEEcCCCCceEecCcccc-chhhhhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCH
Confidence 678888888777642 223333332 22222212111 11000000011112345556544444445554444454432
Q ss_pred -hcc--Cc--ceEEEeeccCCCCcceee
Q 003511 93 -VVQ--GL--NATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 93 -vl~--Gy--N~tIfAYGqTGSGKTyTM 115 (814)
.+. |. .-.|+-||++|||||.+.
T Consensus 207 ~~~~~~gi~~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 207 ELYDDIGIKPPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred HHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 111 11 124778999999999754
No 222
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=70.42 E-value=2 Score=48.87 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=16.3
Q ss_pred cceEEEeeccCCCCcceee
Q 003511 97 LNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 97 yN~tIfAYGqTGSGKTyTM 115 (814)
.++.|+..|+||||||+||
T Consensus 148 ~~GlilI~G~TGSGKTT~l 166 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA 166 (372)
T ss_pred cCCEEEEECCCCCCHHHHH
Confidence 4567888999999999988
No 223
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=70.29 E-value=2 Score=48.57 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=18.2
Q ss_pred ccCcceEEEeeccCCCCcceee
Q 003511 94 VQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 94 l~GyN~tIfAYGqTGSGKTyTM 115 (814)
+.--.+.|+..|+||||||.||
T Consensus 130 ~~~~~glilI~GpTGSGKTTtL 151 (358)
T TIGR02524 130 IAPQEGIVFITGATGSGKSTLL 151 (358)
T ss_pred HhccCCEEEEECCCCCCHHHHH
Confidence 3334688999999999999988
No 224
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=70.25 E-value=8.8 Score=41.20 Aligned_cols=54 Identities=22% Similarity=0.290 Sum_probs=33.2
Q ss_pred EecChHHHHHHHHhhhhcCCCccccCCCCCCCCeEEEEEEEEEEeccccCCceeEEEEEEEEcCCCccc
Q 003511 189 KVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRRQKTEYCNQVMRGKLSLVDLAGSERA 257 (814)
Q Consensus 189 ~V~S~ee~~~lL~~G~~~R~~~~T~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~SkL~fVDLAGSER~ 257 (814)
.+.+.+++...+...... .... + ..-|.-++.|.|..... -.|+||||+|-.+.
T Consensus 85 ~~~~~~~v~~~i~~~~~~-~~~~---~--~~~s~~~i~l~i~~p~~---------~~ltLIDlPGl~~~ 138 (240)
T smart00053 85 KFTDFDEVRNEIEAETDR-VTGT---N--KGISPVPINLRVYSPHV---------LNLTLIDLPGITKV 138 (240)
T ss_pred ccCCHHHHHHHHHHHHHH-hcCC---C--CcccCcceEEEEeCCCC---------CceEEEeCCCcccc
Confidence 346788888888766542 1111 1 22355677777764322 35899999998643
No 225
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=70.18 E-value=1.6 Score=45.36 Aligned_cols=15 Identities=47% Similarity=0.855 Sum_probs=12.8
Q ss_pred EEeeccCCCCcceee
Q 003511 101 VFAYGSTGSGKTYTM 115 (814)
Q Consensus 101 IfAYGqTGSGKTyTM 115 (814)
+..+|.||||||+|+
T Consensus 26 ~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTV 40 (229)
T ss_pred EEEECCCCCCHHHHH
Confidence 446799999999988
No 226
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=70.04 E-value=5.5 Score=44.80 Aligned_cols=52 Identities=21% Similarity=0.303 Sum_probs=30.2
Q ss_pred ceeeeeeecCCCCCcHHHHHHHHhhhHhh-hcc--Cc--ceEEEeeccCCCCcceee
Q 003511 64 KNYCFDRAFGPGCTNLDVYTACISSVISG-VVQ--GL--NATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 64 k~F~FD~VF~~~atQeeVy~~~v~plV~~-vl~--Gy--N~tIfAYGqTGSGKTyTM 115 (814)
..+.||.+.+-+..-+++.+.+..|+... .+. |. ...|+-||++|+|||++.
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 34566666665544455554444443321 111 11 335889999999999765
No 227
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=69.93 E-value=1.5e+02 Score=32.57 Aligned_cols=19 Identities=37% Similarity=0.307 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003511 487 QKEIEENESRRCELQKMID 505 (814)
Q Consensus 487 q~eie~~e~~~~~Le~~l~ 505 (814)
+++|...++.+.+|+++++
T Consensus 192 ~kei~~~re~i~el~e~I~ 210 (258)
T PF15397_consen 192 QKEIVQFREEIDELEEEIP 210 (258)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 228
>PRK06921 hypothetical protein; Provisional
Probab=69.81 E-value=2.9 Score=45.31 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=21.1
Q ss_pred HhhhHhhhcc---CcceEEEeeccCCCCcceeec
Q 003511 86 ISSVISGVVQ---GLNATVFAYGSTGSGKTYTMV 116 (814)
Q Consensus 86 v~plV~~vl~---GyN~tIfAYGqTGSGKTyTM~ 116 (814)
+...++++-. +....|+-||++|+||||.+.
T Consensus 102 ~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~ 135 (266)
T PRK06921 102 AVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLT 135 (266)
T ss_pred HHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHH
Confidence 4455555432 234467899999999999774
No 229
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=69.58 E-value=5.2 Score=48.93 Aligned_cols=89 Identities=24% Similarity=0.406 Sum_probs=55.9
Q ss_pred eeeeecCCCCCcHHHHHHHHhhhHhhhccCcceEEEeeccCCCCcceeeccCC---CCCCchh----hhHHHHHHHHhhc
Q 003511 67 CFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTK---SDPGLMV----LSLHTIFDLIKKD 139 (814)
Q Consensus 67 ~FD~VF~~~atQeeVy~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM~G~~---~~~GIIp----ral~~LF~~i~~~ 139 (814)
....=|.|.-.|..-++. +++.+-+|....+ .+|.||||||+||-.-- ..|-||. .....|+..+..-
T Consensus 3 ~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~~-l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~f 77 (655)
T TIGR00631 3 KLHSPFQPAGDQPKAIAK----LVEGLTDGEKHQT-LLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKEF 77 (655)
T ss_pred eeccCCCCChHHHHHHHH----HHHhhhcCCCcEE-EECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHh
Confidence 334447777788776655 4555556642323 68999999999996532 2233322 2345666666554
Q ss_pred CCCCeEEEEEEEEEEecceee
Q 003511 140 KNSDEFEVSCSYLEVYNEVIY 160 (814)
Q Consensus 140 ~~~~~f~VsvSylEIYnE~I~ 160 (814)
-....+...|||+..|.-..|
T Consensus 78 ~p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 78 FPENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred CCCCeEEEEeeecccCCcccc
Confidence 444457888999999976543
No 230
>PF12846 AAA_10: AAA-like domain
Probab=69.50 E-value=1.7 Score=45.96 Aligned_cols=19 Identities=42% Similarity=0.583 Sum_probs=15.8
Q ss_pred ceEEEeeccCCCCcceeec
Q 003511 98 NATVFAYGSTGSGKTYTMV 116 (814)
Q Consensus 98 N~tIfAYGqTGSGKTyTM~ 116 (814)
|.-++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4567888999999998873
No 231
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=69.14 E-value=2.3 Score=46.02 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=19.3
Q ss_pred hhhccCcceEEEeeccCCCCcceeec
Q 003511 91 SGVVQGLNATVFAYGSTGSGKTYTMV 116 (814)
Q Consensus 91 ~~vl~GyN~tIfAYGqTGSGKTyTM~ 116 (814)
..++..-.+.|+-.|+||||||.||.
T Consensus 73 ~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 73 RKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 44454445667788999999999883
No 232
>PRK10869 recombination and repair protein; Provisional
Probab=69.11 E-value=1.5e+02 Score=35.75 Aligned_cols=18 Identities=33% Similarity=0.708 Sum_probs=13.0
Q ss_pred cCcceEEEeeccCCCCcceee
Q 003511 95 QGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 95 ~GyN~tIfAYGqTGSGKTyTM 115 (814)
.|+|+ -.|.||||||-.|
T Consensus 22 ~glnv---itGetGaGKS~il 39 (553)
T PRK10869 22 SGMTV---ITGETGAGKSIAI 39 (553)
T ss_pred CCcEE---EECCCCCChHHHH
Confidence 46665 4599999997533
No 233
>PRK10884 SH3 domain-containing protein; Provisional
Probab=68.85 E-value=53 Score=34.61 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccC
Q 003511 366 YQRMIDNLQIEVCRLKKELADKD 388 (814)
Q Consensus 366 ~~~~I~~L~~Ei~~Lk~eL~~~~ 388 (814)
....+..|+.|+..|+.+|+...
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999998888744
No 234
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=68.41 E-value=1e+02 Score=33.01 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=22.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 470 QIILDNIRENDEAGINYQKEIEENESRRCELQKMIDEAV 508 (814)
Q Consensus 470 q~l~~~~~~~~e~~~~~q~eie~~e~~~~~Le~~l~~~i 508 (814)
..+++++.+.+-.....|..++.++.+..+|++++..+.
T Consensus 152 eeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 152 EELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 344455555555555566666666666666666666444
No 235
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=68.27 E-value=2.2e+02 Score=34.41 Aligned_cols=30 Identities=7% Similarity=-0.041 Sum_probs=15.1
Q ss_pred eeeecCCCCCcHHHHHHHHhhhHhhhccCc
Q 003511 68 FDRAFGPGCTNLDVYTACISSVISGVVQGL 97 (814)
Q Consensus 68 FD~VF~~~atQeeVy~~~v~plV~~vl~Gy 97 (814)
+..|||.--+-..--+.+-..++..+++++
T Consensus 49 ~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dV 78 (607)
T KOG0240|consen 49 KTYVFDRVFSPNATQEDVYEFAAKPIVDDV 78 (607)
T ss_pred ccceeeeecCCCccHHHHHHHHHHHHHHHH
Confidence 445555444444444444455555555553
No 236
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=67.45 E-value=3.7 Score=41.81 Aligned_cols=19 Identities=37% Similarity=0.651 Sum_probs=15.4
Q ss_pred eEEEeeccCCCCcceeecc
Q 003511 99 ATVFAYGSTGSGKTYTMVG 117 (814)
Q Consensus 99 ~tIfAYGqTGSGKTyTM~G 117 (814)
-.++-+|++|+||||...+
T Consensus 48 ~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH
Confidence 3488999999999997754
No 237
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=66.99 E-value=2.9e+02 Score=33.29 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 003511 365 DYQRMIDNLQIEVCRLKKELAD 386 (814)
Q Consensus 365 ~~~~~I~~L~~Ei~~Lk~eL~~ 386 (814)
.+...|.....++..|..+|..
T Consensus 248 ~~~~~i~~a~~~i~~L~~~l~~ 269 (582)
T PF09731_consen 248 DLNSLIAHAKERIDALQKELAE 269 (582)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666655543
No 238
>PF13166 AAA_13: AAA domain
Probab=66.77 E-value=3.1e+02 Score=33.63 Aligned_cols=14 Identities=43% Similarity=0.745 Sum_probs=11.5
Q ss_pred EEEeeccCCCCcce
Q 003511 100 TVFAYGSTGSGKTY 113 (814)
Q Consensus 100 tIfAYGqTGSGKTy 113 (814)
.-+-||..|||||.
T Consensus 18 ~n~IYG~NGsGKSt 31 (712)
T PF13166_consen 18 INLIYGRNGSGKST 31 (712)
T ss_pred eEEEECCCCCCHHH
Confidence 34689999999984
No 239
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=66.70 E-value=1.1e+02 Score=35.33 Aligned_cols=77 Identities=13% Similarity=0.279 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhhHHHHHHH-HHHhHhHHHHHHHHHHHHHHHHHhcccchHH
Q 003511 489 EIEENESRRCELQKMIDEAVSSNGNKTYLRILSQYRILGMANIELQFE-MAMRDQVIHNQRAAQRQLWNLLMRSGVDEKH 567 (814)
Q Consensus 489 eie~~e~~~~~Le~~l~~~i~~~~~~~~~~lL~k~~~l~~~~~elq~e-~~~r~~~I~~~r~~~~~lW~~l~~~~~~~~~ 567 (814)
.+++-+-+...||+++...++- |. .+...|+.+ ..|...+=.+-.+..|.+|+.|... +.+
T Consensus 252 ~LqEEr~R~erLEeqlNd~~el-------------Hq--~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~---qtR 313 (395)
T PF10267_consen 252 ALQEERYRYERLEEQLNDLTEL-------------HQ--NEIYNLKQELASMEEKMAYQSYERARDIWEVMESC---QTR 313 (395)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH-------------HH--HHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHH---HHH
Confidence 3344444555567666655531 11 123335555 4567777777778899999999888 777
Q ss_pred HHHHH---HhcCceecccc
Q 003511 568 LLDLA---AKHGITIEDWS 583 (814)
Q Consensus 568 ~~~~~---~~~~~~~e~~~ 583 (814)
|..|= ..|.+.+||-.
T Consensus 314 isklE~~~~Qq~~q~e~~~ 332 (395)
T PF10267_consen 314 ISKLEQQQQQQVVQLEGTE 332 (395)
T ss_pred HHHHHHHHhhhhhhhcccc
Confidence 76543 34556677654
No 240
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=66.51 E-value=1.9 Score=50.71 Aligned_cols=65 Identities=22% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhhHHHHHHHHHHhHhHHHHHHHH
Q 003511 482 AGINYQKEIEENESRRCELQKMIDEAVSSNGNKTYLRILSQYRILGMANIELQFEMAMRDQVIHNQRAA 550 (814)
Q Consensus 482 ~~~~~q~eie~~e~~~~~Le~~l~~~i~~~~~~~~~~lL~k~~~l~~~~~elq~e~~~r~~~I~~~r~~ 550 (814)
.+.+++..++.-|++.++++++.+..+.+. +-+|+.-..+|..+..+|+..+..|+.||+.|.+-
T Consensus 409 ll~qyq~RLedSE~RLr~QQ~eKd~qmksI----I~RL~~vEeELrre~~~m~~~~~~kqrii~aQ~~~ 473 (495)
T PF12004_consen 409 LLLQYQARLEDSEERLRRQQEEKDSQMKSI----ISRLMAVEEELRREHAEMQAVLDHKQRIIDAQEKR 473 (495)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHhhhhhHHHHHHHhhhhHHHHHHH----HhhhhhhhhhhhhhHHHHhcccccchHHHHHhhhh
Confidence 345677777777777777777666555432 22444445666778888999999999999888773
No 241
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=66.12 E-value=2.6 Score=43.35 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=17.8
Q ss_pred HhhhccCcceEEEeeccCCCCcceee
Q 003511 90 ISGVVQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 90 V~~vl~GyN~tIfAYGqTGSGKTyTM 115 (814)
|..++...+..++..|+.||||||+|
T Consensus 10 ~~~~l~~~~~~~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 10 VRAILTSGDRVSVLQGPAGTGKTTLL 35 (196)
T ss_dssp HHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred HHHHHhcCCeEEEEEECCCCCHHHHH
Confidence 33444444444556899999999987
No 242
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=66.10 E-value=2.3e+02 Score=31.84 Aligned_cols=6 Identities=17% Similarity=0.180 Sum_probs=2.2
Q ss_pred HHHHHH
Q 003511 281 ANCINA 286 (814)
Q Consensus 281 g~VI~a 286 (814)
..|+.|
T Consensus 52 ~~~v~A 57 (312)
T smart00787 52 DQYVVA 57 (312)
T ss_pred HHHHHH
Confidence 333333
No 243
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=66.08 E-value=1.9e+02 Score=30.86 Aligned_cols=21 Identities=10% Similarity=0.219 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 003511 366 YQRMIDNLQIEVCRLKKELAD 386 (814)
Q Consensus 366 ~~~~I~~L~~Ei~~Lk~eL~~ 386 (814)
++..+..++..+..+..+|..
T Consensus 6 l~~eld~~~~~~~~~~~~l~~ 26 (237)
T PF00261_consen 6 LKDELDEAEERLEEAEEKLKE 26 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555543
No 244
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=66.00 E-value=1.9e+02 Score=30.97 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003511 486 YQKEIEENESRRCELQKMID 505 (814)
Q Consensus 486 ~q~eie~~e~~~~~Le~~l~ 505 (814)
.+++++..+++..++.+.+.
T Consensus 82 ~~~~i~~~r~~l~~~~~~l~ 101 (302)
T PF10186_consen 82 LRKRIEQKRERLEELRESLE 101 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334433333333333333
No 245
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=65.95 E-value=2.7 Score=41.38 Aligned_cols=39 Identities=21% Similarity=0.426 Sum_probs=21.8
Q ss_pred hhhHhhhccCcceEEEeeccCCCCcceeeccCCCCCCchhhhHHHHHHHHhhc
Q 003511 87 SSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTIFDLIKKD 139 (814)
Q Consensus 87 ~plV~~vl~GyN~tIfAYGqTGSGKTyTM~G~~~~~GIIpral~~LF~~i~~~ 139 (814)
..+++....|....++.+|.+|+|||+.+ +.++..+...
T Consensus 13 ~~~l~~~~~~~~~~~ll~G~~G~GKT~ll--------------~~~~~~~~~~ 51 (185)
T PF13191_consen 13 RDLLDAAQSGSPRNLLLTGESGSGKTSLL--------------RALLDRLAER 51 (185)
T ss_dssp HHTTGGTSS-----EEE-B-TTSSHHHHH--------------HHHHHHHHHH
T ss_pred HHHHHHHHcCCCcEEEEECCCCCCHHHHH--------------HHHHHHHHhc
Confidence 33444445677788999999999999854 5566666554
No 246
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=65.90 E-value=4.3 Score=46.36 Aligned_cols=51 Identities=24% Similarity=0.285 Sum_probs=29.4
Q ss_pred eeeeeeecCCCCCcHHHHHHHHhhhHh-hhcc--C--cceEEEeeccCCCCcceee
Q 003511 65 NYCFDRAFGPGCTNLDVYTACISSVIS-GVVQ--G--LNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 65 ~F~FD~VF~~~atQeeVy~~~v~plV~-~vl~--G--yN~tIfAYGqTGSGKTyTM 115 (814)
.+.||.|-+-+..-+++.+.+..|+.. ..+. | ....|+-||++|+|||+..
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 455666655544445555544444443 2222 1 2345888999999999644
No 247
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=65.85 E-value=3e+02 Score=34.19 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=10.9
Q ss_pred HhhHhHHHHHHHHHHhc
Q 003511 272 NINRSLLALANCINALG 288 (814)
Q Consensus 272 ~INkSL~aLg~VI~aLs 288 (814)
.|=+|=..+.+||..|.
T Consensus 79 eiL~Sr~v~~~VV~~L~ 95 (754)
T TIGR01005 79 EILSSNEILKQVVDKLG 95 (754)
T ss_pred HHHccHHHHHHHHHHcC
Confidence 34456667777777764
No 248
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=65.75 E-value=3.5 Score=45.11 Aligned_cols=31 Identities=32% Similarity=0.493 Sum_probs=24.6
Q ss_pred HhhhHhhhccCcceEEEeeccCCCCcceeec
Q 003511 86 ISSVISGVVQGLNATVFAYGSTGSGKTYTMV 116 (814)
Q Consensus 86 v~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 116 (814)
+.+++.++.--.-+.|+..|.|||||+.||-
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 3456777666667788899999999999983
No 249
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=65.64 E-value=58 Score=29.35 Aligned_cols=54 Identities=19% Similarity=0.092 Sum_probs=36.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhhHHHHHHHHHHhHhH
Q 003511 478 ENDEAGINYQKEIEENESRRCELQKMIDEAVSSNGNKTYLRILSQYRILGMANIELQFEMAMRDQV 543 (814)
Q Consensus 478 ~~~e~~~~~q~eie~~e~~~~~Le~~l~~~i~~~~~~~~~~lL~k~~~l~~~~~elq~e~~~r~~~ 543 (814)
...++|.-+|.+|++++++...|.++...+-++ -..|..+|..|+.+...+..-
T Consensus 15 qAvdtI~LLqmEieELKekn~~L~~e~~~~~~~------------r~~L~~en~qLk~E~~~Wqer 68 (79)
T PRK15422 15 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQ------------REELERENNHLKEQQNGWQER 68 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------HHHHHHHHHHHHHHHHHHHHH
Confidence 344566778999999999999888887765543 133455666676666655443
No 250
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=65.61 E-value=3.4e+02 Score=33.64 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=9.9
Q ss_pred hHhHHHHHHHHHHhcC
Q 003511 274 NRSLLALANCINALGK 289 (814)
Q Consensus 274 NkSL~aLg~VI~aLs~ 289 (814)
+.-+..+..++.+|..
T Consensus 61 ~s~~~~~~~~l~~Lqn 76 (716)
T KOG4593|consen 61 KSLLMQLEDELMQLQN 76 (716)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4445667777777744
No 251
>PRK09183 transposase/IS protein; Provisional
Probab=65.58 E-value=4.2 Score=43.88 Aligned_cols=44 Identities=23% Similarity=0.376 Sum_probs=25.1
Q ss_pred eeeecCCCCCcHHHHHHHHhhhHhhhccCcceEEEeeccCCCCcceeec
Q 003511 68 FDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMV 116 (814)
Q Consensus 68 FD~VF~~~atQeeVy~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 116 (814)
||.-|.+..+...+..-..-.. +-.|.| |+-+|++|+||||.+.
T Consensus 77 fd~~~~~~~~~~~i~~L~~~~~---i~~~~~--v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 77 YDFTFATGAPQKQLQSLRSLSF---IERNEN--IVLLGPSGVGKTHLAI 120 (259)
T ss_pred cccccCCCCCHHHHHHHhcCCc---hhcCCe--EEEEeCCCCCHHHHHH
Confidence 4444555555444432211112 334554 5678999999999774
No 252
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=65.55 E-value=2.1e+02 Score=35.57 Aligned_cols=15 Identities=47% Similarity=0.437 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 003511 429 FELEETNLRIRAELQ 443 (814)
Q Consensus 429 ~elee~~~~~~~e~~ 443 (814)
..++..+.++..+++
T Consensus 166 ~kl~~~~qe~naeL~ 180 (916)
T KOG0249|consen 166 RKLEEQLEELNAELQ 180 (916)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333433
No 253
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=65.49 E-value=2e+02 Score=30.88 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhcccchH-------HHHHHHHhcCceeccc
Q 003511 549 AAQRQLWNLLMRSGVDEK-------HLLDLAAKHGITIEDW 582 (814)
Q Consensus 549 ~~~~~lW~~l~~~~~~~~-------~~~~~~~~~~~~~e~~ 582 (814)
+.+.+|-++|..+.++-. +++..-.+-|.+|+-+
T Consensus 131 ~Rl~~L~~~l~~~dv~~~ek~r~vlea~~~E~~yg~~i~~~ 171 (251)
T PF11932_consen 131 ERLARLRAMLDDADVSLAEKFRRVLEAYQIEMEYGRTIEVY 171 (251)
T ss_pred HHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhCCceeEE
Confidence 334455555555555443 2234556778887766
No 254
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=65.35 E-value=3.9 Score=46.19 Aligned_cols=36 Identities=22% Similarity=0.511 Sum_probs=27.5
Q ss_pred CCcHHHHHHHHhhhHhhhccCcceEEEeeccCCCCcceee
Q 003511 76 CTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 76 atQeeVy~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM 115 (814)
..|+.+|+.++..+.. .+| ..+|.-|+-||||||.+
T Consensus 4 ~eQ~~~~~~v~~~~~~--~~~--~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIEN--EEG--LNFFVTGPAGTGKSFLI 39 (364)
T ss_pred HHHHHHHHHHHHHHHc--cCC--cEEEEEcCCCCChhHHH
Confidence 4688999887666543 344 46688999999999966
No 255
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=65.25 E-value=2e+02 Score=31.16 Aligned_cols=13 Identities=8% Similarity=-0.181 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHhc
Q 003511 549 AAQRQLWNLLMRS 561 (814)
Q Consensus 549 ~~~~~lW~~l~~~ 561 (814)
.++..+.+.|..+
T Consensus 148 ~lid~~i~~l~~l 160 (250)
T PRK14474 148 QIVGIFIARLEHL 160 (250)
T ss_pred HHHHHHHHHhccc
Confidence 4444444444444
No 256
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=64.93 E-value=3.2 Score=42.00 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=15.9
Q ss_pred HhhhccCcceEEEeeccCCCCcceeec
Q 003511 90 ISGVVQGLNATVFAYGSTGSGKTYTMV 116 (814)
Q Consensus 90 V~~vl~GyN~tIfAYGqTGSGKTyTM~ 116 (814)
|..++.--. ..+..|+.|||||+|+.
T Consensus 10 i~~~~~~~~-~~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 10 IQSALSSNG-ITLIQGPPGTGKTTTLA 35 (236)
T ss_dssp HHHHCTSSE--EEEE-STTSSHHHHHH
T ss_pred HHHHHcCCC-CEEEECCCCCChHHHHH
Confidence 344443333 45668999999998874
No 257
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=64.90 E-value=2.4e+02 Score=33.14 Aligned_cols=40 Identities=13% Similarity=0.059 Sum_probs=19.6
Q ss_pred EEecChHHHHHHHHhhhhcCCCccccCCCCCCCCeEEEEEEEEEE
Q 003511 188 IKVHSADKILELLNLGNSRRKTENTEANGTSSRSHAVLEITVKRR 232 (814)
Q Consensus 188 v~V~S~ee~~~lL~~G~~~R~~~~T~~N~~SSRSHaIftI~V~~~ 232 (814)
+...+..++..++..-+-. ...+- ..--.|++|...|+-.
T Consensus 120 IkFr~q~da~~Fy~efNGk-~Fn~l----e~e~Chll~V~~ve~~ 159 (493)
T KOG0804|consen 120 IKFRDQADADTFYEEFNGK-QFNSL----EPEVCHLLYVDRVEVT 159 (493)
T ss_pred EEeccchhHHHHHHHcCCC-cCCCC----CccceeEEEEEEEEEE
Confidence 5566777777766543221 11111 1113577776655544
No 258
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=64.76 E-value=2.9e+02 Score=32.64 Aligned_cols=6 Identities=33% Similarity=0.827 Sum_probs=3.3
Q ss_pred HHHHHH
Q 003511 79 LDVYTA 84 (814)
Q Consensus 79 eeVy~~ 84 (814)
+++|..
T Consensus 54 ed~ysT 59 (527)
T PF15066_consen 54 EDIYST 59 (527)
T ss_pred HHHHhh
Confidence 566643
No 259
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=64.69 E-value=39 Score=41.94 Aligned_cols=34 Identities=18% Similarity=0.365 Sum_probs=25.0
Q ss_pred HHHHHHhhhHhhhc-cCcceEEEeeccCCCCcceee
Q 003511 81 VYTACISSVISGVV-QGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 81 Vy~~~v~plV~~vl-~GyN~tIfAYGqTGSGKTyTM 115 (814)
||. ++......++ .|.|.||+.-|.+|||||.|.
T Consensus 74 ifa-iA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 74 VFA-IADKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred HHH-HHHHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 553 3433343333 689999999999999999876
No 260
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=64.43 E-value=3.4 Score=43.72 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=16.7
Q ss_pred ccCcceEEEeeccCCCCcceee
Q 003511 94 VQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 94 l~GyN~tIfAYGqTGSGKTyTM 115 (814)
+......++.+|++|+|||+++
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHH
Confidence 3434556788999999999755
No 261
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=64.13 E-value=3.5e+02 Score=33.26 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=15.0
Q ss_pred CCccceecccccccccCCCCcc
Q 003511 663 SPSTYLKLRNCSEQWIDSTPGS 684 (814)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~ 684 (814)
.++.|--+|...-+|-.|-+++
T Consensus 556 ~~~~~~air~~~~~~Ep~~r~~ 577 (904)
T KOG4721|consen 556 GILDLPAIRTAVPPHEPGGRGS 577 (904)
T ss_pred CCcCchhhhccCCccCCCCCCC
Confidence 3667777888888887665444
No 262
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=64.09 E-value=2.9e+02 Score=32.35 Aligned_cols=25 Identities=12% Similarity=-0.090 Sum_probs=13.2
Q ss_pred HhhhhhHHHHHHHHHHhHhHHHHHH
Q 003511 524 RILGMANIELQFEMAMRDQVIHNQR 548 (814)
Q Consensus 524 ~~l~~~~~elq~e~~~r~~~I~~~r 548 (814)
........||+....--.+.|+.-+
T Consensus 220 ~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 220 SADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3334455556555555555555555
No 263
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=63.68 E-value=2.7 Score=38.80 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=12.7
Q ss_pred EEeeccCCCCcceee
Q 003511 101 VFAYGSTGSGKTYTM 115 (814)
Q Consensus 101 IfAYGqTGSGKTyTM 115 (814)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 578999999999754
No 264
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=63.48 E-value=39 Score=41.70 Aligned_cols=35 Identities=20% Similarity=0.392 Sum_probs=25.2
Q ss_pred HHHHHHHhhhHhhhc-cCcceEEEeeccCCCCcceee
Q 003511 80 DVYTACISSVISGVV-QGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 80 eVy~~~v~plV~~vl-~GyN~tIfAYGqTGSGKTyTM 115 (814)
-||. ++......++ .|.|.||+.-|.+|||||.|.
T Consensus 74 Hifa-vA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 74 HVFA-IADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CHHH-HHHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 4663 3333333333 689999999999999999876
No 265
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=63.47 E-value=1.9e+02 Score=29.98 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 003511 364 SDYQRMIDNLQIEVCRLKKELA 385 (814)
Q Consensus 364 ~~~~~~I~~L~~Ei~~Lk~eL~ 385 (814)
..++..|.+++..+..|...+.
T Consensus 19 ~~LQ~KV~qYr~rc~ele~~l~ 40 (182)
T PF15035_consen 19 QRLQAKVLQYRKRCAELEQQLS 40 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555553
No 266
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=63.36 E-value=2.6 Score=43.60 Aligned_cols=16 Identities=44% Similarity=0.605 Sum_probs=14.1
Q ss_pred EEEeeccCCCCcceee
Q 003511 100 TVFAYGSTGSGKTYTM 115 (814)
Q Consensus 100 tIfAYGqTGSGKTyTM 115 (814)
.|+-.|+||+|||.|+
T Consensus 3 vi~lvGptGvGKTTt~ 18 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTI 18 (196)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCchHhHH
Confidence 4677899999999987
No 267
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=63.33 E-value=3.6e+02 Score=33.81 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=9.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 003511 470 QIILDNIRENDEAGINYQKEIE 491 (814)
Q Consensus 470 q~l~~~~~~~~e~~~~~q~eie 491 (814)
..+++.+.+.++.-+.+|+.+.
T Consensus 93 ~rll~dyselEeENislQKqvs 114 (717)
T PF09730_consen 93 ARLLQDYSELEEENISLQKQVS 114 (717)
T ss_pred HHHhhhhHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 268
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=63.26 E-value=3.2e+02 Score=32.55 Aligned_cols=10 Identities=40% Similarity=0.581 Sum_probs=5.2
Q ss_pred HHHHhcccch
Q 003511 556 NLLMRSGVDE 565 (814)
Q Consensus 556 ~~l~~~~~~~ 565 (814)
++|..+|+.+
T Consensus 212 rILE~sGL~~ 221 (475)
T PRK10361 212 RVLEASGLRE 221 (475)
T ss_pred HHHHHhCCCc
Confidence 4555555544
No 269
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.16 E-value=3e+02 Score=32.23 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=27.5
Q ss_pred HhhhHhhhccCcceEEEeeccCCCCcceeeccCCCCCCchhhhHHHHHHHHhhcC
Q 003511 86 ISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTIFDLIKKDK 140 (814)
Q Consensus 86 v~plV~~vl~GyN~tIfAYGqTGSGKTyTM~G~~~~~GIIpral~~LF~~i~~~~ 140 (814)
=+++|.....+.|.-||.. .-+=|.-+ ...|-+|..+..+...+....
T Consensus 45 WrdlI~~~s~~~g~~if~~--lr~lq~~F-----~r~~~vPlsLd~Vi~~l~~~G 92 (439)
T KOG2911|consen 45 WRDLILKYSRKSGRRIFLV--LRTLQELF-----SRGGGVPLSLDTVIDYLIQEG 92 (439)
T ss_pred HHHHHHHHhhhcCCeEeeH--HHHHHHHh-----ccCCCcCccHHHHHHHHHhcc
Confidence 3566666677777777763 11111111 234667778887777776543
No 270
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=62.76 E-value=6.6 Score=48.96 Aligned_cols=23 Identities=43% Similarity=0.576 Sum_probs=19.0
Q ss_pred HhhhccCcceEEEeeccCCCCccee
Q 003511 90 ISGVVQGLNATVFAYGSTGSGKTYT 114 (814)
Q Consensus 90 V~~vl~GyN~tIfAYGqTGSGKTyT 114 (814)
+..+.+|.|+.|+| +||||||-+
T Consensus 31 ~~~i~~G~nvLiiA--PTGsGKTeA 53 (814)
T COG1201 31 IPEIHSGENVLIIA--PTGSGKTEA 53 (814)
T ss_pred HHHHhCCCceEEEc--CCCCChHHH
Confidence 34567999998887 999999865
No 271
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=62.54 E-value=6.6 Score=45.01 Aligned_cols=51 Identities=14% Similarity=0.272 Sum_probs=38.8
Q ss_pred cceeeeeeecCCCCCcHHHHHHHHhhhHhhhcc----CcceEEEeeccCCCCcce
Q 003511 63 EKNYCFDRAFGPGCTNLDVYTACISSVISGVVQ----GLNATVFAYGSTGSGKTY 113 (814)
Q Consensus 63 ~k~F~FD~VF~~~atQeeVy~~~v~plV~~vl~----GyN~tIfAYGqTGSGKTy 113 (814)
.+++.||.+.+.-.--..+.+.++..+..+++. -.---+.-||+.|+|||+
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTl 163 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSF 163 (413)
T ss_pred hhhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHH
Confidence 356788888776666677888888888888774 223457789999999986
No 272
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=62.30 E-value=3.7e+02 Score=32.98 Aligned_cols=12 Identities=8% Similarity=0.003 Sum_probs=6.1
Q ss_pred cccCCCCccccc
Q 003511 676 QWIDSTPGSWFE 687 (814)
Q Consensus 676 ~~~~~~~~~~~~ 687 (814)
+.-+|.|+..|.
T Consensus 414 ~kr~~~~g~~~~ 425 (861)
T KOG1899|consen 414 LKRNGNEGANHN 425 (861)
T ss_pred ccccCCcccccc
Confidence 344555555554
No 273
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=62.07 E-value=2.2e+02 Score=33.26 Aligned_cols=23 Identities=17% Similarity=0.353 Sum_probs=11.6
Q ss_pred eecccccCCCCCCCCccCCCCCC
Q 003511 578 TIEDWSMDSHVGLPERKKSMDFS 600 (814)
Q Consensus 578 ~~e~~~~~~~~~~~~~~~~~~~~ 600 (814)
++=|-++---.|+|....+-+.+
T Consensus 425 ~lcGf~iv~nngl~~l~~sl~s~ 447 (575)
T KOG4403|consen 425 SLCGFQIVNNNGLPSLNRSLYSD 447 (575)
T ss_pred HHhCceeecCCCchHHHHHHhcc
Confidence 34455555555666544444433
No 274
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=62.01 E-value=2.4e+02 Score=30.78 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=17.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhccCCC
Q 003511 363 VSDYQRMIDNLQIEVCRLKKELADKDSQ 390 (814)
Q Consensus 363 ~~~~~~~I~~L~~Ei~~Lk~eL~~~~~~ 390 (814)
+..|-..++.|+.++..|..+|......
T Consensus 13 la~YIekVr~LE~~N~~Le~~i~~~~~~ 40 (312)
T PF00038_consen 13 LASYIEKVRFLEQENKRLESEIEELREK 40 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence 4456667777888888888877765543
No 275
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.90 E-value=94 Score=27.46 Aligned_cols=30 Identities=23% Similarity=0.221 Sum_probs=22.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 478 ENDEAGINYQKEIEENESRRCELQKMIDEA 507 (814)
Q Consensus 478 ~~~e~~~~~q~eie~~e~~~~~Le~~l~~~ 507 (814)
...+++.-+|.+|++++++...|.++...+
T Consensus 15 qAvdTI~LLQmEieELKEknn~l~~e~q~~ 44 (79)
T COG3074 15 QAIDTITLLQMEIEELKEKNNSLSQEVQNA 44 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 334566678888999998888888776643
No 276
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=61.89 E-value=5.1 Score=43.80 Aligned_cols=42 Identities=21% Similarity=0.300 Sum_probs=25.6
Q ss_pred eeeeeecCCCCCcHHHHHHHHhhhHhhhccCcceEEEeeccCCCCcceee
Q 003511 66 YCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 66 F~FD~VF~~~atQeeVy~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM 115 (814)
-.||.+.+ |+++.+. +..++ -.|....++-||++|+|||+++
T Consensus 12 ~~~~~~~g----~~~~~~~-L~~~~---~~~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 12 ALLEDILG----QDEVVER-LSRAV---DSPNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred CcHHHhcC----CHHHHHH-HHHHH---hCCCCceEEEECCCCCCHHHHH
Confidence 34777764 4444433 22222 2344335788999999999876
No 277
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=61.75 E-value=3.5e+02 Score=32.56 Aligned_cols=40 Identities=30% Similarity=0.255 Sum_probs=17.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 407 LNVLSLEISENAQERINLQNALFELEETNLRIRAELQYLDDA 448 (814)
Q Consensus 407 l~~l~~~~~e~~~e~~~lq~~l~elee~~~~~~~e~~~l~~~ 448 (814)
++.+..++.++......| .+.+.++.+.....+++.+-+.
T Consensus 257 ~~~L~~~l~~~~~~l~~L--eld~aeeel~~I~e~ie~lYd~ 296 (570)
T COG4477 257 LERLKEQLVENSELLTQL--ELDEAEEELGLIQEKIESLYDL 296 (570)
T ss_pred HHHHHHHHHHHHhHHHHh--hhhhHHHHHHHHHHHHHHHHHH
Confidence 445555554433333222 2334444444444444444333
No 278
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=61.73 E-value=4.1 Score=45.49 Aligned_cols=27 Identities=33% Similarity=0.495 Sum_probs=18.4
Q ss_pred hhHhhhccCcceEEEeeccCCCCcceee
Q 003511 88 SVISGVVQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 88 plV~~vl~GyN~tIfAYGqTGSGKTyTM 115 (814)
.++..++.+. ..|+..|.||||||++|
T Consensus 139 ~~L~~~v~~~-~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 139 EAIIAAVRAH-RNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 3445555543 45666699999999766
No 279
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=61.24 E-value=1e+02 Score=31.06 Aligned_cols=55 Identities=16% Similarity=0.120 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhhHHHHHHHH
Q 003511 480 DEAGINYQKEIEENESRRCELQKMIDEAVSSNGNKTYLRILSQYRILGMANIELQFEM 537 (814)
Q Consensus 480 ~e~~~~~q~eie~~e~~~~~Le~~l~~~i~~~~~~~~~~lL~k~~~l~~~~~elq~e~ 537 (814)
+..+.+++.++..++.....|+.+|..+.+.--..+ +......+..++.+|+..+
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~e---l~~~i~~l~~e~~~l~~kL 132 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSEPTNEE---LREEIEELEEEIEELEEKL 132 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666666666666555432222 2223334444444444443
No 280
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=61.07 E-value=5.2e+02 Score=34.21 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=8.6
Q ss_pred CcceEEEeeccCCCCcceee
Q 003511 96 GLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 96 GyN~tIfAYGqTGSGKTyTM 115 (814)
|.=+=|...-..+|||-|.|
T Consensus 86 GaFGEV~lVr~k~t~~VYAM 105 (1317)
T KOG0612|consen 86 GAFGEVALVRHKSTEKVYAM 105 (1317)
T ss_pred cccceeEEEEeeccccchhH
Confidence 33333433344444444444
No 281
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=61.03 E-value=3.5 Score=45.45 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=18.9
Q ss_pred hhHhhhccCcceEEEeeccCCCCcceee
Q 003511 88 SVISGVVQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 88 plV~~vl~GyN~tIfAYGqTGSGKTyTM 115 (814)
.++..++.+ ...|+..|.||||||++|
T Consensus 123 ~~L~~~v~~-~~~ilI~G~tGSGKTTll 149 (299)
T TIGR02782 123 DVLREAVLA-RKNILVVGGTGSGKTTLA 149 (299)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 334444443 356778899999999877
No 282
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=61.01 E-value=4.6 Score=45.27 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=18.7
Q ss_pred hhhHhhhccCcceEEEeeccCCCCcceee
Q 003511 87 SSVISGVVQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 87 ~plV~~vl~GyN~tIfAYGqTGSGKTyTM 115 (814)
..++..++.+. ..|+..|.||||||.+|
T Consensus 150 ~~~L~~~v~~~-~nili~G~tgSGKTTll 177 (332)
T PRK13900 150 KEFLEHAVISK-KNIIISGGTSTGKTTFT 177 (332)
T ss_pred HHHHHHHHHcC-CcEEEECCCCCCHHHHH
Confidence 34444444433 34667799999999877
No 283
>PF13479 AAA_24: AAA domain
Probab=60.98 E-value=3.7 Score=42.77 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=16.5
Q ss_pred ceEEEeeccCCCCcceeecc
Q 003511 98 NATVFAYGSTGSGKTYTMVG 117 (814)
Q Consensus 98 N~tIfAYGqTGSGKTyTM~G 117 (814)
+..++.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 45688999999999987754
No 284
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=60.56 E-value=2.7e+02 Score=30.74 Aligned_cols=14 Identities=43% Similarity=0.562 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 003511 369 MIDNLQIEVCRLKKE 383 (814)
Q Consensus 369 ~I~~L~~Ei~~Lk~e 383 (814)
+-..|..|+ .++..
T Consensus 136 LydlL~kE~-~lr~~ 149 (267)
T PF10234_consen 136 LYDLLGKEV-ELREE 149 (267)
T ss_pred HHHHHhchH-hHHHH
Confidence 344445554 34433
No 285
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=59.62 E-value=32 Score=42.36 Aligned_cols=35 Identities=23% Similarity=0.405 Sum_probs=26.1
Q ss_pred HHHHHHHhhhHhhhc-cCcceEEEeeccCCCCcceee
Q 003511 80 DVYTACISSVISGVV-QGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 80 eVy~~~v~plV~~vl-~GyN~tIfAYGqTGSGKTyTM 115 (814)
-|| .++.....+++ .|.|.||+.-|.+|||||.+.
T Consensus 68 Hif-avA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 68 HVF-AIADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CHH-HHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 466 34444444444 589999999999999999876
No 286
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=59.49 E-value=3.4e+02 Score=31.65 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 003511 365 DYQRMIDNLQIEVCRLKKELAD 386 (814)
Q Consensus 365 ~~~~~I~~L~~Ei~~Lk~eL~~ 386 (814)
.++..+..++.++.+|+.++..
T Consensus 101 ~~~~~~~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 101 LLEQQLDNLKDQKKSLDTLKQS 122 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777788888777654
No 287
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=58.91 E-value=4.4 Score=37.39 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=13.4
Q ss_pred EEEeeccCCCCcceee
Q 003511 100 TVFAYGSTGSGKTYTM 115 (814)
Q Consensus 100 tIfAYGqTGSGKTyTM 115 (814)
.|+-.|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999754
No 288
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=58.88 E-value=4.3e+02 Score=32.55 Aligned_cols=55 Identities=20% Similarity=0.283 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHhHhHHHHHH--HHHHHHH---HHHHhcccchHHHHHHHHhcCceecccccCC
Q 003511 529 ANIELQFEMAMRDQVIHNQR--AAQRQLW---NLLMRSGVDEKHLLDLAAKHGITIEDWSMDS 586 (814)
Q Consensus 529 ~~~elq~e~~~r~~~I~~~r--~~~~~lW---~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 586 (814)
...+...+..++=+-|++.| .+...|| +.+...++.-.++.|.-..+ ||++.++.
T Consensus 168 ~w~~~~~~~c~~fQ~~Ee~rl~~lk~~l~~~~~~is~~~~~~~q~~E~~k~~---le~~sv~~ 227 (611)
T KOG2398|consen 168 DWEQEMTDLCLKFQEIEESRLSFLKEELWLFANQISESCVKIDQVMEEFKLT---LESCSVDE 227 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHh---hccCCHHH
Confidence 44444444444444444443 4455566 67888899989988887776 78887773
No 289
>PRK09343 prefoldin subunit beta; Provisional
Probab=58.82 E-value=1.8e+02 Score=28.08 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003511 482 AGINYQKEIEENESRRCELQKMIDEAVS 509 (814)
Q Consensus 482 ~~~~~q~eie~~e~~~~~Le~~l~~~i~ 509 (814)
.+..+.+..+.++++..+++..|.+++.
T Consensus 86 ~ik~lekq~~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 86 RSRTLEKQEKKLREKLKELQAKINEMLS 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555554443
No 290
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=58.60 E-value=50 Score=40.84 Aligned_cols=35 Identities=17% Similarity=0.399 Sum_probs=25.5
Q ss_pred HHHHHHHhhhHhhhc-cCcceEEEeeccCCCCcceee
Q 003511 80 DVYTACISSVISGVV-QGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 80 eVy~~~v~plV~~vl-~GyN~tIfAYGqTGSGKTyTM 115 (814)
-||. ++......++ .|.|.||+.-|.+|||||.|.
T Consensus 73 Hiya-iA~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 73 HIFA-IADNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CHHH-HHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 4663 3444443333 589999999999999999876
No 291
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=58.30 E-value=4.3e+02 Score=32.39 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=15.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 477 RENDEAGINYQKEIEENESRRCELQKMIDEA 507 (814)
Q Consensus 477 ~~~~e~~~~~q~eie~~e~~~~~Le~~l~~~ 507 (814)
+.+-.++..+..++..+.....+|+..|...
T Consensus 313 e~~~~qI~~le~~l~~~~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 313 EKHKAQISALEKELKAKISELEELKEKLNSR 343 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344445555555555555555555555433
No 292
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=58.11 E-value=2.9e+02 Score=30.35 Aligned_cols=31 Identities=19% Similarity=0.127 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 003511 528 MANIELQFEMAMRDQVIHNQRAAQRQLWNLL 558 (814)
Q Consensus 528 ~~~~elq~e~~~r~~~I~~~r~~~~~lW~~l 558 (814)
..|..|+.++......|.+..+.+..|-+-.
T Consensus 186 ~~N~~m~kei~~~re~i~el~e~I~~L~~eV 216 (258)
T PF15397_consen 186 LENQVMQKEIVQFREEIDELEEEIPQLRAEV 216 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777776555554433
No 293
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=57.76 E-value=8.4 Score=44.23 Aligned_cols=18 Identities=39% Similarity=0.547 Sum_probs=15.9
Q ss_pred ceEEEeeccCCCCcceee
Q 003511 98 NATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 98 N~tIfAYGqTGSGKTyTM 115 (814)
...|+.+|+||+|||.|+
T Consensus 174 ~~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTI 191 (388)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457889999999999997
No 294
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=57.69 E-value=3.7e+02 Score=31.52 Aligned_cols=30 Identities=27% Similarity=0.244 Sum_probs=21.6
Q ss_pred HHHHHHhcCceecccccCCCCCCCCccCCC
Q 003511 568 LLDLAAKHGITIEDWSMDSHVGLPERKKSM 597 (814)
Q Consensus 568 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 597 (814)
+.-++.+-|+....-.+-|+-+.++.+.-.
T Consensus 315 L~~l~~kig~~~~~y~lvp~GshSyI~~~~ 344 (447)
T KOG2751|consen 315 LHTLANKIGLNFVRYRLVPMGSHSYIKKRM 344 (447)
T ss_pred HHHHHHhcCcccceeeeecccchhHHHHhc
Confidence 346788888888888888877777655443
No 295
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.43 E-value=3e+02 Score=30.33 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003511 491 EENESRRCELQKMIDEAV 508 (814)
Q Consensus 491 e~~e~~~~~Le~~l~~~i 508 (814)
+.+..-..+++.++..+.
T Consensus 172 e~l~al~~e~e~~~~~L~ 189 (265)
T COG3883 172 ETLVALQNELETQLNSLN 189 (265)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333334444444333
No 296
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=57.43 E-value=6.3e+02 Score=34.07 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q 003511 369 MIDNLQIEVCRLKKELA 385 (814)
Q Consensus 369 ~I~~L~~Ei~~Lk~eL~ 385 (814)
.|.+|+.+|..|..++.
T Consensus 743 ri~el~~~IaeL~~~i~ 759 (1353)
T TIGR02680 743 RIAELDARLAAVDDELA 759 (1353)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 297
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=57.34 E-value=2.9e+02 Score=30.18 Aligned_cols=17 Identities=29% Similarity=0.344 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003511 366 YQRMIDNLQIEVCRLKK 382 (814)
Q Consensus 366 ~~~~I~~L~~Ei~~Lk~ 382 (814)
++..|..|+.|+..|+.
T Consensus 122 le~~i~~L~eEl~fl~~ 138 (312)
T PF00038_consen 122 LENQIQSLKEELEFLKQ 138 (312)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34445555555554443
No 298
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.34 E-value=3.9e+02 Score=31.60 Aligned_cols=9 Identities=33% Similarity=0.394 Sum_probs=4.4
Q ss_pred ccCCCCcce
Q 003511 311 DGLSGNSQT 319 (814)
Q Consensus 311 dsLGGnskT 319 (814)
|.+|.+++|
T Consensus 194 d~wg~~~~t 202 (521)
T KOG1937|consen 194 DQWGNSSHT 202 (521)
T ss_pred HHHhccCCc
Confidence 444555554
No 299
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=57.09 E-value=5.6 Score=38.47 Aligned_cols=18 Identities=39% Similarity=0.423 Sum_probs=14.3
Q ss_pred EEEeeccCCCCcceeecc
Q 003511 100 TVFAYGSTGSGKTYTMVG 117 (814)
Q Consensus 100 tIfAYGqTGSGKTyTM~G 117 (814)
.++..|+||||||.++..
T Consensus 26 ~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 26 DVILAAPTGSGKTLAALL 43 (201)
T ss_pred cEEEECCCCCchhHHHHH
Confidence 456779999999997754
No 300
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=56.84 E-value=5.6 Score=40.34 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=17.2
Q ss_pred hHhhhccCcceEEEeeccCCCCcceee
Q 003511 89 VISGVVQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 89 lV~~vl~GyN~tIfAYGqTGSGKTyTM 115 (814)
++...+.. ...+.-.|+||||||.+|
T Consensus 17 ~l~~~v~~-g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 17 YLWLAVEA-RKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHhC-CCEEEEECCCCCCHHHHH
Confidence 33333433 234567799999999876
No 301
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=56.41 E-value=1.3e+02 Score=35.91 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=22.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003511 472 ILDNIRENDEAGINYQKEIEENESRRCELQKMIDEAVS 509 (814)
Q Consensus 472 l~~~~~~~~e~~~~~q~eie~~e~~~~~Le~~l~~~i~ 509 (814)
+.+++.+......++..++++++++...|+.+|..+..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 136 NGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33344444445555666666677777777777665543
No 302
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.32 E-value=4.5e+02 Score=32.05 Aligned_cols=97 Identities=14% Similarity=0.145 Sum_probs=56.4
Q ss_pred HHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003511 406 WLNVLSLEI-SENAQERINLQNALFELEETNLRIRAELQYLDDAIAKKQAIGKDDAVVEALKSRRQIILDNIRENDEAGI 484 (814)
Q Consensus 406 ~l~~l~~~~-~e~~~e~~~lq~~l~elee~~~~~~~e~~~l~~~~~~~~~~~k~~~~~e~l~~~~q~l~~~~~~~~e~~~ 484 (814)
.|+.++.-. .+.+.....|+.+|....+.+..+...+..++.....+ ......+...+..+..+.+-..+.-.
T Consensus 445 ~M~E~~Dt~~~~dV~~~~sL~~~LeqAsK~CRIL~~RL~K~~R~q~R~------~~~~~~d~~kIK~LE~e~R~S~~Ls~ 518 (852)
T KOG4787|consen 445 QMNELKDTVFKSDVQKVISLATKLEQANKQCRILNERLNKLHRKQVRD------GEIQYSDELKIKILELEKRLSEKLAI 518 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHHHHHHhh------hhhccchHHHHHHHHHHHHHHHHHHH
Confidence 344444322 34556667788888877777777777776655421111 11112222233344445555556667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 485 NYQKEIEENESRRCELQKMIDEAV 508 (814)
Q Consensus 485 ~~q~eie~~e~~~~~Le~~l~~~i 508 (814)
+++.+++.++..+..+++++..+-
T Consensus 519 ~L~~ElE~~~~~~~~~e~~~evL~ 542 (852)
T KOG4787|consen 519 DLVSELEGKIPTIDEIEQCCEVLA 542 (852)
T ss_pred HHHHHHHhhcCcHhHHHHHHHHHH
Confidence 788888888888888888776544
No 303
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=55.90 E-value=6.9 Score=43.85 Aligned_cols=16 Identities=44% Similarity=0.578 Sum_probs=13.9
Q ss_pred EEEeeccCCCCcceee
Q 003511 100 TVFAYGSTGSGKTYTM 115 (814)
Q Consensus 100 tIfAYGqTGSGKTyTM 115 (814)
.|+..|.||||||++|
T Consensus 146 nilI~G~tGSGKTTll 161 (323)
T PRK13833 146 NIVISGGTGSGKTTLA 161 (323)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4677899999999987
No 304
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=55.78 E-value=1.8e+02 Score=35.44 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 479 NDEAGINYQKEIEENESRRCELQKMIDEAV 508 (814)
Q Consensus 479 ~~e~~~~~q~eie~~e~~~~~Le~~l~~~i 508 (814)
..+....++-++++++.+...|+.+|.++.
T Consensus 434 l~~e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 434 LEEENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555555555433
No 305
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=55.41 E-value=4e+02 Score=31.12 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=14.1
Q ss_pred HHHHhcCceecccccCCCCCCCC
Q 003511 570 DLAAKHGITIEDWSMDSHVGLPE 592 (814)
Q Consensus 570 ~~~~~~~~~~e~~~~~~~~~~~~ 592 (814)
++...+...+-++++......|.
T Consensus 398 e~~~~~~~~~~n~rvIs~A~~P~ 420 (458)
T COG3206 398 ELSIQEASPIGNARVISPAVPPL 420 (458)
T ss_pred HHHHhhcCCCCceeEeccccCCC
Confidence 44445567777777765555554
No 306
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=55.40 E-value=37 Score=41.88 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=25.1
Q ss_pred HHHHHHHhhhHhhhc-cCcceEEEeeccCCCCcceee
Q 003511 80 DVYTACISSVISGVV-QGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 80 eVy~~~v~plV~~vl-~GyN~tIfAYGqTGSGKTyTM 115 (814)
-||. ++......++ .|.|.||+.-|.+|||||.|.
T Consensus 68 Hifa-iA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 68 HIYA-LADNAYRSMKSENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred CHHH-HHHHHHHHHHHcCCCceEEEEcCCCCCcchHH
Confidence 3563 3333333333 689999999999999999876
No 307
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=55.37 E-value=4.8e+02 Score=32.02 Aligned_cols=26 Identities=12% Similarity=0.358 Sum_probs=11.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003511 470 QIILDNIRENDEAGINYQKEIEENES 495 (814)
Q Consensus 470 q~l~~~~~~~~e~~~~~q~eie~~e~ 495 (814)
..++.++.+....+..++.+++.++.
T Consensus 238 ~lim~eLe~aq~ri~~lE~e~e~L~~ 263 (629)
T KOG0963|consen 238 SLIMTELEDAQQRIVFLEREVEQLRE 263 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443333
No 308
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=55.02 E-value=6.1e+02 Score=33.14 Aligned_cols=40 Identities=13% Similarity=0.267 Sum_probs=27.2
Q ss_pred cccCCCCcceeEEEeeCCCCCChHHHHHHHHHHHHHhhcc
Q 003511 310 KDGLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAKKIK 349 (814)
Q Consensus 310 kdsLGGnskT~mIatISPs~~~~eETlsTLrfA~Rak~Ik 349 (814)
+.+.+|.+.+.||-.=.-+...|-+.|..+.+--+|+++-
T Consensus 89 ~R~I~~G~seY~IDne~VT~eeY~~eLekinIlVkARNFL 128 (1141)
T KOG0018|consen 89 TRAINGGTSEYMIDNEIVTREEYLEELEKINILVKARNFL 128 (1141)
T ss_pred hhhhcCCceeEEEcceeccHHHHHHHHhhcceeeeeeeEE
Confidence 3344566777888776666666777777777776777653
No 309
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=54.94 E-value=1.9e+02 Score=27.21 Aligned_cols=33 Identities=24% Similarity=0.153 Sum_probs=18.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 476 IRENDEAGINYQKEIEENESRRCELQKMIDEAV 508 (814)
Q Consensus 476 ~~~~~e~~~~~q~eie~~e~~~~~Le~~l~~~i 508 (814)
++..+..+..+.+.++.++.+..++++.|.+++
T Consensus 76 ~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 76 KETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344555566666666666666666665554
No 310
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=54.92 E-value=4.3e+02 Score=31.36 Aligned_cols=7 Identities=43% Similarity=0.695 Sum_probs=3.5
Q ss_pred EEEEEEc
Q 003511 245 KLSLVDL 251 (814)
Q Consensus 245 kL~fVDL 251 (814)
.+.+.||
T Consensus 225 ~f~~~dl 231 (527)
T PF15066_consen 225 CFNLLDL 231 (527)
T ss_pred chhhHhh
Confidence 3445555
No 311
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=54.87 E-value=2.9e+02 Score=29.39 Aligned_cols=62 Identities=16% Similarity=0.167 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhhHHHHHHHHHHhHhHHHHHHH
Q 003511 483 GINYQKEIEENESRRCELQKMIDEAVSSNGNKTYLRILSQYRILGMANIELQFEMAMRDQVIHNQRA 549 (814)
Q Consensus 483 ~~~~q~eie~~e~~~~~Le~~l~~~i~~~~~~~~~~lL~k~~~l~~~~~elq~e~~~r~~~I~~~r~ 549 (814)
...++.++..+..+...|+.++...... +++..+ +...+......++..+..-.+.|.++|.
T Consensus 152 ~~~l~ae~~~l~~~~~~le~el~s~~~r---q~L~~~--qrdl~~~~~~~l~~~l~~Lq~~ln~~R~ 213 (240)
T PF12795_consen 152 RWLLQAELAALEAQIEMLEQELLSNNNR---QELLQL--QRDLLKARIQRLQQQLQALQNLLNQKRR 213 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcHHH---HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667777777777666522211 111111 1112223444455566666666666664
No 312
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=54.75 E-value=4.4 Score=43.25 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=15.3
Q ss_pred cceEEEeeccCCCCcceeec
Q 003511 97 LNATVFAYGSTGSGKTYTMV 116 (814)
Q Consensus 97 yN~tIfAYGqTGSGKTyTM~ 116 (814)
.++.++..|..|||||+||.
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~ 31 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLL 31 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHH
Confidence 56677888999999999983
No 313
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=54.02 E-value=3.1e+02 Score=29.42 Aligned_cols=26 Identities=15% Similarity=0.040 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHh
Q 003511 547 QRAAQRQLWNLLMRSGVDEKHLLDLAAK 574 (814)
Q Consensus 547 ~r~~~~~lW~~l~~~~~~~~~~~~~~~~ 574 (814)
++.++.++...|..+ +..+-..++.-
T Consensus 146 ~~~lid~~i~~l~~l--~~~~~~~l~~~ 171 (246)
T TIGR03321 146 EERMVDVFVQRLRTL--DPDEKAALAEA 171 (246)
T ss_pred HHHHHHHHHHHhhcC--CHHHHHHHHHH
Confidence 445555555555444 34444444443
No 314
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=54.01 E-value=4 Score=37.76 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=19.5
Q ss_pred EEeeccCCCCcceeeccCCCCCCchhhhHHHHHHHH
Q 003511 101 VFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTIFDLI 136 (814)
Q Consensus 101 IfAYGqTGSGKTyTM~G~~~~~GIIpral~~LF~~i 136 (814)
|+-||++|.|||+.+ -.++.+|.+.+
T Consensus 1 I~i~G~~G~GKS~l~----------~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA----------KELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHH----------HHHHHHHHHHh
Confidence 578999999999866 34566666665
No 315
>PTZ00464 SNF-7-like protein; Provisional
Probab=53.98 E-value=3e+02 Score=29.25 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Q 003511 364 SDYQRMIDNLQIEVCRLKKELAD 386 (814)
Q Consensus 364 ~~~~~~I~~L~~Ei~~Lk~eL~~ 386 (814)
..+...|..|..|+...|+.+..
T Consensus 28 ~~l~kKi~~ld~E~~~ak~~~k~ 50 (211)
T PTZ00464 28 EVVDARINKIDAELMKLKEQIQR 50 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777777766654
No 316
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=53.92 E-value=6.9 Score=42.66 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=16.0
Q ss_pred cCc-ceEEEeeccCCCCcceee
Q 003511 95 QGL-NATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 95 ~Gy-N~tIfAYGqTGSGKTyTM 115 (814)
.|. ...++-||++|+|||+.+
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la 60 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVA 60 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHH
Confidence 443 356667999999999876
No 317
>PHA00729 NTP-binding motif containing protein
Probab=53.89 E-value=9.6 Score=40.65 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=20.7
Q ss_pred HhhhHhhhccCcceEEEeeccCCCCcceee
Q 003511 86 ISSVISGVVQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 86 v~plV~~vl~GyN~tIfAYGqTGSGKTyTM 115 (814)
++.+++.+..|-=..|+.+|.+|+||||..
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA 34 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYA 34 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHH
Confidence 344555554433347899999999999854
No 318
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=53.86 E-value=6.3 Score=44.46 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=18.5
Q ss_pred hhhccCcceEEEeeccCCCCcceeec
Q 003511 91 SGVVQGLNATVFAYGSTGSGKTYTMV 116 (814)
Q Consensus 91 ~~vl~GyN~tIfAYGqTGSGKTyTM~ 116 (814)
-.++.+. +.|+..|.||||||+++-
T Consensus 167 ~~av~~r-~NILisGGTGSGKTTlLN 191 (355)
T COG4962 167 RRAVGIR-CNILISGGTGSGKTTLLN 191 (355)
T ss_pred HHHHhhc-eeEEEeCCCCCCHHHHHH
Confidence 3334444 778888999999998873
No 319
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=53.62 E-value=4.9e+02 Score=31.64 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=20.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHHHHHHhhcccccccc
Q 003511 320 VMVATISPVDSQYHHTLNTLKYADRAKKIKTHIQKN 355 (814)
Q Consensus 320 ~mIatISPs~~~~eETlsTLrfA~Rak~Ikn~~~~N 355 (814)
.+++.++|. ++-.-|..|..---+-+|.+....+
T Consensus 147 s~~a~gspH--~WP~iL~mlhWlvdlI~~~t~~v~~ 180 (581)
T KOG0995|consen 147 SLQAAGSPH--NWPHILGMLHWLVDLIRINTALVED 180 (581)
T ss_pred hhccCCCCC--ccHHHHHHHHHHHHHHHHhHHHhhc
Confidence 667777774 3556677776655555555444433
No 320
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=53.60 E-value=4.1e+02 Score=30.81 Aligned_cols=34 Identities=15% Similarity=0.092 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhc
Q 003511 528 MANIELQFEMAMRDQVIHNQRAAQRQLWNLLMRS 561 (814)
Q Consensus 528 ~~~~elq~e~~~r~~~I~~~r~~~~~lW~~l~~~ 561 (814)
.....+-.+++.|+..|.++.+-..++..-+..+
T Consensus 238 ~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~l 271 (499)
T COG4372 238 AQISQKAQQIAARAEQIRERERQLQRLETAQARL 271 (499)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445555555555544444444443333
No 321
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=53.58 E-value=6 Score=37.45 Aligned_cols=14 Identities=36% Similarity=0.629 Sum_probs=12.4
Q ss_pred EEeeccCCCCccee
Q 003511 101 VFAYGSTGSGKTYT 114 (814)
Q Consensus 101 IfAYGqTGSGKTyT 114 (814)
|+..|.+|||||+.
T Consensus 2 ii~~G~pgsGKSt~ 15 (143)
T PF13671_consen 2 IILCGPPGSGKSTL 15 (143)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999974
No 322
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.56 E-value=4.8e+02 Score=31.56 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhhHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 003511 480 DEAGINYQKEIEENESRRCELQKMIDEAVSSNGNKTYLRILSQYRILGMANIELQFEMAMRDQVIHNQRAAQRQLWNLLM 559 (814)
Q Consensus 480 ~e~~~~~q~eie~~e~~~~~Le~~l~~~i~~~~~~~~~~lL~k~~~l~~~~~elq~e~~~r~~~I~~~r~~~~~lW~~l~ 559 (814)
.++|..++++...+.++...|+..+.++.++ ...+-.-...|-+....+++++.-++=.|+.+++..-.|-+-|.
T Consensus 330 ~EeIe~~~ke~kdLkEkv~~lq~~l~eke~s-----l~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLk 404 (654)
T KOG4809|consen 330 LEEIESFRKENKDLKEKVNALQAELTEKESS-----LIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLK 404 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666555543 22222222333444445556666666666677666666666665
Q ss_pred hc
Q 003511 560 RS 561 (814)
Q Consensus 560 ~~ 561 (814)
.|
T Consensus 405 kA 406 (654)
T KOG4809|consen 405 KA 406 (654)
T ss_pred HH
Confidence 55
No 323
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=53.47 E-value=2.7e+02 Score=32.23 Aligned_cols=29 Identities=14% Similarity=0.221 Sum_probs=15.9
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHhcccchHHHH
Q 003511 538 AMRDQVIHNQRAAQRQLWNLLMRSGVDEKHLL 569 (814)
Q Consensus 538 ~~r~~~I~~~r~~~~~lW~~l~~~~~~~~~~~ 569 (814)
.|...+-.+--+..|..|+.|... +.+|.
T Consensus 335 smeervaYQsyERaRdIqEalEsc---qtris 363 (455)
T KOG3850|consen 335 SMEERVAYQSYERARDIQEALESC---QTRIS 363 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 344444444445566677766665 55554
No 324
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=53.32 E-value=3.1e+02 Score=29.33 Aligned_cols=34 Identities=9% Similarity=0.052 Sum_probs=14.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 472 ILDNIRENDEAGINYQKEIEENESRRCELQKMID 505 (814)
Q Consensus 472 l~~~~~~~~e~~~~~q~eie~~e~~~~~Le~~l~ 505 (814)
+.+.+....+.+...+.++++++.........+.
T Consensus 75 l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 75 LRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444433
No 325
>PRK00846 hypothetical protein; Provisional
Probab=53.26 E-value=85 Score=28.23 Aligned_cols=55 Identities=11% Similarity=0.049 Sum_probs=38.2
Q ss_pred HhhhhhHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCceeccc
Q 003511 524 RILGMANIELQFEMAMRDQVIHNQRAAQRQLWNLLMRSGVDEKHLLDLAAKHGITIEDW 582 (814)
Q Consensus 524 ~~l~~~~~elq~e~~~r~~~I~~~r~~~~~lW~~l~~~~~~~~~~~~~~~~~~~~~e~~ 582 (814)
+.++.-..+|+..++.-+.+|++..+++.++|..+..+ +.+|. +..++-..++..
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L---~~ql~-~L~~rL~~~~~s 63 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARN---AELIR-HLLEDLGKVRST 63 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHhccc
Confidence 34455666788888999999999999999999999888 44443 333333444433
No 326
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=52.99 E-value=4.7 Score=38.36 Aligned_cols=15 Identities=40% Similarity=0.594 Sum_probs=12.9
Q ss_pred EEeeccCCCCcceee
Q 003511 101 VFAYGSTGSGKTYTM 115 (814)
Q Consensus 101 IfAYGqTGSGKTyTM 115 (814)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999754
No 327
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=52.90 E-value=43 Score=41.35 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=19.6
Q ss_pred cCcceEEEeeccCCCCcceee
Q 003511 95 QGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 95 ~GyN~tIfAYGqTGSGKTyTM 115 (814)
.|.|.||+.-|.+|||||.|.
T Consensus 85 ~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 85 EGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred cCCCceEEEECCCCCCchhHH
Confidence 689999999999999999876
No 328
>PRK14143 heat shock protein GrpE; Provisional
Probab=52.78 E-value=2.2e+02 Score=30.75 Aligned_cols=14 Identities=29% Similarity=0.582 Sum_probs=10.7
Q ss_pred hHHHHHHHHhcCce
Q 003511 565 EKHLLDLAAKHGIT 578 (814)
Q Consensus 565 ~~~~~~~~~~~~~~ 578 (814)
.++++++.+++||+
T Consensus 155 ~k~l~~~L~k~GV~ 168 (238)
T PRK14143 155 YKQLVDVLKRLGVS 168 (238)
T ss_pred HHHHHHHHHHCCCe
Confidence 45777888888886
No 329
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=52.78 E-value=3.2e+02 Score=29.27 Aligned_cols=10 Identities=20% Similarity=0.206 Sum_probs=5.5
Q ss_pred CceecccccC
Q 003511 576 GITIEDWSMD 585 (814)
Q Consensus 576 ~~~~e~~~~~ 585 (814)
-|+++|.++.
T Consensus 174 ~i~~dG~~~~ 183 (251)
T PF11932_consen 174 TITLDGEERQ 183 (251)
T ss_pred EEeECCeEEE
Confidence 3556666543
No 330
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=52.47 E-value=4.7 Score=41.18 Aligned_cols=16 Identities=38% Similarity=0.634 Sum_probs=12.0
Q ss_pred EEEeeccCCCCcceee
Q 003511 100 TVFAYGSTGSGKTYTM 115 (814)
Q Consensus 100 tIfAYGqTGSGKTyTM 115 (814)
-++.+|.||||||.+|
T Consensus 40 h~li~G~tgsGKS~~l 55 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLL 55 (205)
T ss_dssp SEEEE--TTSSHHHHH
T ss_pred eEEEEcCCCCCccHHH
Confidence 4688999999999876
No 331
>PRK06547 hypothetical protein; Provisional
Probab=52.43 E-value=11 Score=38.23 Aligned_cols=28 Identities=32% Similarity=0.355 Sum_probs=18.7
Q ss_pred hhHhhhccCcceEEEeeccCCCCcceee
Q 003511 88 SVISGVVQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 88 plV~~vl~GyN~tIfAYGqTGSGKTyTM 115 (814)
.++..+..+.--.|..+|.+|||||+.-
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 3444444555556667799999999643
No 332
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=52.15 E-value=5.6e+02 Score=31.93 Aligned_cols=17 Identities=12% Similarity=0.204 Sum_probs=8.9
Q ss_pred hhhHhhhccCcceEEEe
Q 003511 87 SSVISGVVQGLNATVFA 103 (814)
Q Consensus 87 ~plV~~vl~GyN~tIfA 103 (814)
+.++..|++-.|-.+-.
T Consensus 97 r~v~~~VV~~L~L~~~~ 113 (726)
T PRK09841 97 RMILGKTIAELNLRDIV 113 (726)
T ss_pred HHHHHHHHHHhCCceEE
Confidence 45555666555554433
No 333
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=51.97 E-value=8.1 Score=38.93 Aligned_cols=21 Identities=38% Similarity=0.551 Sum_probs=15.9
Q ss_pred hhccCcceEEEeeccCCCCccee
Q 003511 92 GVVQGLNATVFAYGSTGSGKTYT 114 (814)
Q Consensus 92 ~vl~GyN~tIfAYGqTGSGKTyT 114 (814)
.+++|.| ++..++||+|||.+
T Consensus 32 ~~~~~~~--~li~~~TG~GKT~~ 52 (203)
T cd00268 32 PLLSGRD--VIGQAQTGSGKTAA 52 (203)
T ss_pred HHhcCCc--EEEECCCCCcHHHH
Confidence 3445777 46778999999976
No 334
>PRK00106 hypothetical protein; Provisional
Probab=51.92 E-value=5.1e+02 Score=31.37 Aligned_cols=20 Identities=10% Similarity=0.126 Sum_probs=8.5
Q ss_pred HhHhHHHHHHHHHHHHHHHH
Q 003511 539 MRDQVIHNQRAAQRQLWNLL 558 (814)
Q Consensus 539 ~r~~~I~~~r~~~~~lW~~l 558 (814)
+++....+...+++..-+-.
T Consensus 178 ~~~~~~~~~~~~i~~~e~~a 197 (535)
T PRK00106 178 TENKLTHEIATRIREAEREV 197 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 335
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=51.70 E-value=2.6e+02 Score=27.93 Aligned_cols=33 Identities=15% Similarity=0.088 Sum_probs=22.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003511 477 RENDEAGINYQKEIEENESRRCELQKMIDEAVS 509 (814)
Q Consensus 477 ~~~~e~~~~~q~eie~~e~~~~~Le~~l~~~i~ 509 (814)
......+..+|.-++.+..++..||+.+..++.
T Consensus 100 ~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~ 132 (146)
T PF08702_consen 100 INQPSNIRVLQNILRSNRQKIQRLEQDIDQQER 132 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777777888888888877776554
No 336
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=51.59 E-value=5.6 Score=44.89 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=18.1
Q ss_pred hhHhhhccCcceEEEeeccCCCCcceee
Q 003511 88 SVISGVVQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 88 plV~~vl~GyN~tIfAYGqTGSGKTyTM 115 (814)
.++..++.+ ...|+..|+||||||++|
T Consensus 153 ~~l~~~v~~-~~nilI~G~tGSGKTTll 179 (344)
T PRK13851 153 AFLHACVVG-RLTMLLCGPTGSGKTTMS 179 (344)
T ss_pred HHHHHHHHc-CCeEEEECCCCccHHHHH
Confidence 344444432 234677899999999987
No 337
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=51.56 E-value=4.6e+02 Score=30.70 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=14.0
Q ss_pred CCCCCCcccchhhhhccccceeccCC
Q 003511 636 PAGLWDPARTVCREEHRRSYYFLSHD 661 (814)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (814)
-.+.||.....|-. +|++.|.|
T Consensus 284 tiK~WDl~k~~C~k----t~l~~S~c 305 (459)
T KOG0288|consen 284 TIKLWDLQKAYCSK----TVLPGSQC 305 (459)
T ss_pred hhhhhhhhhhheec----cccccccc
Confidence 35678887777753 45555655
No 338
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=51.56 E-value=1.9e+02 Score=32.36 Aligned_cols=13 Identities=31% Similarity=0.501 Sum_probs=10.4
Q ss_pred HHHHhcCceeccc
Q 003511 570 DLAAKHGITIEDW 582 (814)
Q Consensus 570 ~~~~~~~~~~e~~ 582 (814)
++.++|||.|-+-
T Consensus 168 eli~khGlVlv~~ 180 (302)
T PF09738_consen 168 ELIEKHGLVLVPD 180 (302)
T ss_pred HHHHHCCeeeCCC
Confidence 5669999998764
No 339
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=51.49 E-value=23 Score=40.35 Aligned_cols=128 Identities=15% Similarity=0.217 Sum_probs=64.5
Q ss_pred CCceEEEEEeCCCCCCcCCCC--eEEEe-CCcEEEEECCCCCchhhhhccccCCcceeeeeeecCCCCCcHHHHHHHHhh
Q 003511 12 STTLTVAIKCRPLTEREQGRD--IVRVK-HDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGPGCTNLDVYTACISS 88 (814)
Q Consensus 12 ~~~IkV~VRvRPl~~~E~~~~--~v~v~-~~~~Vvv~dp~~~~~~~~~~~~~~~~k~F~FD~VF~~~atQeeVy~~~v~p 88 (814)
++.-+.+|++.+.-+++.-.+ .|.+. +.-.|+.+=|......+....- ...-.-+|+.|=+-+..-++|.+.+--|
T Consensus 92 ~~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v-~e~PdvtY~dIGGL~~Qi~EirE~VELP 170 (406)
T COG1222 92 STGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEV-EEKPDVTYEDIGGLDEQIQEIREVVELP 170 (406)
T ss_pred CCCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeee-ccCCCCChhhccCHHHHHHHHHHHhccc
Confidence 345578888888877764222 23333 2222222212211110000000 0011223344433333446677666666
Q ss_pred hHhh-hc--cCcc--eEEEeeccCCCCcceeec--------------cCC---CCCCchhhhHHHHHHHHhhcC
Q 003511 89 VISG-VV--QGLN--ATVFAYGSTGSGKTYTMV--------------GTK---SDPGLMVLSLHTIFDLIKKDK 140 (814)
Q Consensus 89 lV~~-vl--~GyN--~tIfAYGqTGSGKTyTM~--------------G~~---~~~GIIpral~~LF~~i~~~~ 140 (814)
+.+- .+ =|.. -.|+-||+.|||||-.-- |+. .--|==+|.+++||....+..
T Consensus 171 L~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lAreka 244 (406)
T COG1222 171 LKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKA 244 (406)
T ss_pred ccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcC
Confidence 6642 22 2443 258999999999974321 111 012555799999999877654
No 340
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=51.34 E-value=2.5e+02 Score=29.14 Aligned_cols=85 Identities=19% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccchhHHHHHHHHHHhhhhhHHHHHHHHHHhH----hHHHHHH
Q 003511 474 DNIRENDEAGINYQKEIEENESRRCELQKMID-EAVSSNGNKTYLRILSQYRILGMANIELQFEMAMRD----QVIHNQR 548 (814)
Q Consensus 474 ~~~~~~~e~~~~~q~eie~~e~~~~~Le~~l~-~~i~~~~~~~~~~lL~k~~~l~~~~~elq~e~~~r~----~~I~~~r 548 (814)
+........+..++.+++.++.+..+|+..+. .........+-..+|.+...|.....+|+.++.... ..|++.+
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~ 141 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLK 141 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 003511 549 AAQRQLWNLL 558 (814)
Q Consensus 549 ~~~~~lW~~l 558 (814)
+......+.+
T Consensus 142 ~~~~~~~~~a 151 (188)
T PF03962_consen 142 EEIKIAKEAA 151 (188)
T ss_pred HHHHHHHHHH
No 341
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=51.25 E-value=2.5e+02 Score=27.60 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003511 485 NYQKEIEENESRRCELQKMI 504 (814)
Q Consensus 485 ~~q~eie~~e~~~~~Le~~l 504 (814)
.+..++...+.+...|++.|
T Consensus 130 q~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 130 QYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555443
No 342
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=51.23 E-value=7.5e+02 Score=33.09 Aligned_cols=11 Identities=18% Similarity=0.157 Sum_probs=4.4
Q ss_pred HHHHHHHhHhH
Q 003511 533 LQFEMAMRDQV 543 (814)
Q Consensus 533 lq~e~~~r~~~ 543 (814)
++.+++.+++-
T Consensus 976 ~~e~l~~~~~~ 986 (1294)
T KOG0962|consen 976 SEEHLEERDNE 986 (1294)
T ss_pred HHHHHHHHHHH
Confidence 33334444333
No 343
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=51.11 E-value=24 Score=38.49 Aligned_cols=71 Identities=21% Similarity=0.302 Sum_probs=42.2
Q ss_pred eecCCCCCcHHHHHHHHhhhHhhhc---cCcc--eEEEeeccCCCCcceeec--------------cCC---CCCCchhh
Q 003511 70 RAFGPGCTNLDVYTACISSVISGVV---QGLN--ATVFAYGSTGSGKTYTMV--------------GTK---SDPGLMVL 127 (814)
Q Consensus 70 ~VF~~~atQeeVy~~~v~plV~~vl---~GyN--~tIfAYGqTGSGKTyTM~--------------G~~---~~~GIIpr 127 (814)
.|=+-+..-++|-+.+--|+...=| =|.+ -.|+.||+.|+|||-..- |+. ..-|=-||
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegpr 235 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPR 235 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcH
Confidence 3333444445555555555554322 1332 358899999999974321 111 12367799
Q ss_pred hHHHHHHHHhhcC
Q 003511 128 SLHTIFDLIKKDK 140 (814)
Q Consensus 128 al~~LF~~i~~~~ 140 (814)
.++++|....+..
T Consensus 236 mvrdvfrlakena 248 (408)
T KOG0727|consen 236 MVRDVFRLAKENA 248 (408)
T ss_pred HHHHHHHHHhccC
Confidence 9999999877654
No 344
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=50.83 E-value=1.5e+02 Score=29.28 Aligned_cols=82 Identities=18% Similarity=0.272 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccch------hHHHHHHHHHHhhhhhHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhc
Q 003511 488 KEIEENESRRCELQKMIDEAVSSNGN------KTYLRILSQYRILGMANIELQFEMAMRDQVIHNQRAAQRQLWNLLMRS 561 (814)
Q Consensus 488 ~eie~~e~~~~~Le~~l~~~i~~~~~------~~~~~lL~k~~~l~~~~~elq~e~~~r~~~I~~~r~~~~~lW~~l~~~ 561 (814)
.+.+++++....++..|+..++..-+ +.+-.++.....-.....++...+..-+..|..+++..++||..-+..
T Consensus 40 ~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s~~~ 119 (142)
T PF04048_consen 40 HRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEAKSLLGCRREELKELWQRSQEY 119 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444444444555555544443211 122233332233233455566677777778888888899999887764
Q ss_pred ccchHHHHHHHH
Q 003511 562 GVDEKHLLDLAA 573 (814)
Q Consensus 562 ~~~~~~~~~~~~ 573 (814)
++|+++..
T Consensus 120 ----~~mi~iL~ 127 (142)
T PF04048_consen 120 ----KEMIEILD 127 (142)
T ss_pred ----HHHHHHHH
Confidence 66666554
No 345
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=50.79 E-value=5e+02 Score=32.36 Aligned_cols=29 Identities=14% Similarity=0.086 Sum_probs=19.3
Q ss_pred CCCcceeEEEeeCCCCCChHHHHHHHHHH
Q 003511 314 SGNSQTVMVATISPVDSQYHHTLNTLKYA 342 (814)
Q Consensus 314 GGnskT~mIatISPs~~~~eETlsTLrfA 342 (814)
++++.++-|..-++.+.-...-+++|-=+
T Consensus 224 ~~~s~ii~Is~~~~dP~~Aa~ilN~la~~ 252 (726)
T PRK09841 224 SKESGMLELTMTGDDPQLITRILNSIANN 252 (726)
T ss_pred CCCCCeEEEEEeCCCHHHHHHHHHHHHHH
Confidence 44566777777788777666666666433
No 346
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=50.67 E-value=5.2e+02 Score=31.04 Aligned_cols=190 Identities=14% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCC--CCCCCcchhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 003511 367 QRMIDNLQIEVCRLKKELADKDS--QPSVKPAEKAADDELSWLNVLSLEISENAQERINLQNAL---FELEETNLRIRAE 441 (814)
Q Consensus 367 ~~~I~~L~~Ei~~Lk~eL~~~~~--~~~~~~~~~~~~~e~~~l~~l~~~~~e~~~e~~~lq~~l---~elee~~~~~~~e 441 (814)
...+..|..||.+||..|..... ....................+...+.+...+...|...+ ..++........+
T Consensus 171 ~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~ 250 (522)
T PF05701_consen 171 EEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAE 250 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHcccchHH------------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003511 442 LQYLDDAIAKKQAIGKDDAV------------VEALKSRRQIILDNIRENDEAGINYQKEIEENESRRCELQKMIDEAVS 509 (814)
Q Consensus 442 ~~~l~~~~~~~~~~~k~~~~------------~e~l~~~~q~l~~~~~~~~e~~~~~q~eie~~e~~~~~Le~~l~~~i~ 509 (814)
+..|...+.......-.... +..+....+....++......+..++..++.++.+.......+..+-
T Consensus 251 l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lk- 329 (522)
T PF05701_consen 251 LESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLK- 329 (522)
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred ccchhHHHHHHHHHHhhhhhHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhc
Q 003511 510 SNGNKTYLRILSQYRILGMANIELQFEMAMRDQVIHNQRAAQRQLWNLLMRS 561 (814)
Q Consensus 510 ~~~~~~~~~lL~k~~~l~~~~~elq~e~~~r~~~I~~~r~~~~~lW~~l~~~ 561 (814)
+..-..-..+..|......++.++..-..--...++..-.+|..|-.+
T Consensus 330 ----e~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql 377 (522)
T PF05701_consen 330 ----EREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQL 377 (522)
T ss_pred ----HHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
No 347
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=50.47 E-value=6.7 Score=36.01 Aligned_cols=15 Identities=40% Similarity=0.401 Sum_probs=12.5
Q ss_pred EEeeccCCCCcceee
Q 003511 101 VFAYGSTGSGKTYTM 115 (814)
Q Consensus 101 IfAYGqTGSGKTyTM 115 (814)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 577899999999754
No 348
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=50.37 E-value=4.1e+02 Score=29.77 Aligned_cols=15 Identities=27% Similarity=0.248 Sum_probs=9.6
Q ss_pred hcccchHHHHHHHHh
Q 003511 560 RSGVDEKHLLDLAAK 574 (814)
Q Consensus 560 ~~~~~~~~~~~~~~~ 574 (814)
.-|.+..+|-.+-++
T Consensus 270 ~r~~t~~Ev~~Lk~~ 284 (325)
T PF08317_consen 270 CRGWTRSEVKRLKAK 284 (325)
T ss_pred hcCCCHHHHHHHHHH
Confidence 456667777766655
No 349
>PF15294 Leu_zip: Leucine zipper
Probab=50.27 E-value=4e+02 Score=29.61 Aligned_cols=21 Identities=38% Similarity=0.452 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 003511 366 YQRMIDNLQIEVCRLKKELAD 386 (814)
Q Consensus 366 ~~~~I~~L~~Ei~~Lk~eL~~ 386 (814)
+...|..|+.|+..||..|..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~ 150 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKS 150 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777766553
No 350
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=50.25 E-value=6.3e+02 Score=31.91 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhcc
Q 003511 528 MANIELQFEMAMRDQVIHNQRAAQRQLWNLLMRSG 562 (814)
Q Consensus 528 ~~~~elq~e~~~r~~~I~~~r~~~~~lW~~l~~~~ 562 (814)
..-..+.+.-.++.---.-++....++|.-.....
T Consensus 208 ~if~~i~R~~~l~~~Y~~~r~~~l~~~W~~~~~~~ 242 (766)
T PF10191_consen 208 KIFSSIGREPQLEQYYCKCRKAPLQRLWQEYCQSD 242 (766)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33344555555666666666777888888777765
No 351
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=50.17 E-value=2.7e+02 Score=28.72 Aligned_cols=23 Identities=22% Similarity=0.175 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003511 486 YQKEIEENESRRCELQKMIDEAV 508 (814)
Q Consensus 486 ~q~eie~~e~~~~~Le~~l~~~i 508 (814)
++.+...++++...|+++-.+++
T Consensus 156 L~l~~~~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 156 LQLQLNMLEEKLRKLEEENRELV 178 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333
No 352
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=50.06 E-value=28 Score=39.66 Aligned_cols=47 Identities=23% Similarity=0.392 Sum_probs=27.2
Q ss_pred ceeee-e-eecCCCCCcHHHHHHHHhhhHhhhc--cCcceEEEeeccCCCCccee
Q 003511 64 KNYCF-D-RAFGPGCTNLDVYTACISSVISGVV--QGLNATVFAYGSTGSGKTYT 114 (814)
Q Consensus 64 k~F~F-D-~VF~~~atQeeVy~~~v~plV~~vl--~GyN~tIfAYGqTGSGKTyT 114 (814)
+.|.| | .||+. ++.-+.++.-+-.... ...+-.+.-.|++|||||..
T Consensus 44 ~~y~~F~~~~~G~----~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStl 94 (361)
T smart00763 44 KRYRFFDHDFFGM----EEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSL 94 (361)
T ss_pred eeccccchhccCc----HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHH
Confidence 34543 4 78874 4444444433322222 23456678899999999863
No 353
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=49.72 E-value=6.5 Score=42.92 Aligned_cols=17 Identities=41% Similarity=0.577 Sum_probs=14.1
Q ss_pred EEEeeccCCCCcceeec
Q 003511 100 TVFAYGSTGSGKTYTMV 116 (814)
Q Consensus 100 tIfAYGqTGSGKTyTM~ 116 (814)
.|.-.|+||+|||+|+.
T Consensus 196 vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLA 212 (282)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56666999999999983
No 354
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=49.72 E-value=7.3 Score=39.46 Aligned_cols=17 Identities=29% Similarity=0.433 Sum_probs=14.3
Q ss_pred eEEEeeccCCCCcceee
Q 003511 99 ATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 99 ~tIfAYGqTGSGKTyTM 115 (814)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788999999999854
No 355
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.39 E-value=5.7e+02 Score=31.21 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----chhHHHHHHHHHHhhh-----hhHHHHH
Q 003511 465 LKSRRQIILDNIREND-EAGINYQKEIEENESRRCELQKMIDEAVSSN----GNKTYLRILSQYRILG-----MANIELQ 534 (814)
Q Consensus 465 l~~~~q~l~~~~~~~~-e~~~~~q~eie~~e~~~~~Le~~l~~~i~~~----~~~~~~~lL~k~~~l~-----~~~~elq 534 (814)
+++++..+.+.+.+.+ .+...++++++...+..+-|+..|.++-... +.+.+...+++-=+++ ..-+.|+
T Consensus 442 ~QA~M~E~~Dt~~~~dV~~~~sL~~~LeqAsK~CRIL~~RL~K~~R~q~R~~~~~~~d~~kIK~LE~e~R~S~~Ls~~L~ 521 (852)
T KOG4787|consen 442 EQAQMNELKDTVFKSDVQKVISLATKLEQANKQCRILNERLNKLHRKQVRDGEIQYSDELKIKILELEKRLSEKLAIDLV 521 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555444333 3456778888877777777777776443211 1122222222222222 1234466
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHhcccchHHHHH-HHHhcCceecccccC
Q 003511 535 FEMAMRDQVIHNQRAAQRQLWNLLMRSGVDEKHLLD-LAAKHGITIEDWSMD 585 (814)
Q Consensus 535 ~e~~~r~~~I~~~r~~~~~lW~~l~~~~~~~~~~~~-~~~~~~~~~e~~~~~ 585 (814)
.++.-....|.+...+..-|-..+ +.+ -.++|-++++|..-|
T Consensus 522 ~ElE~~~~~~~~~e~~~evL~~~~---------~~t~~l~Kq~L~~~~~q~d 564 (852)
T KOG4787|consen 522 SELEGKIPTIDEIEQCCEVLAAVE---------TQTGRLCKQFLKIDHAQKD 564 (852)
T ss_pred HHHHhhcCcHhHHHHHHHHHHHHh---------hhHHHHHHHHHHhcccCcc
Confidence 666555555555544333332222 222 234566666666544
No 356
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=49.35 E-value=71 Score=39.55 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=24.7
Q ss_pred HHHHHHhhhHhhhc-cCcceEEEeeccCCCCcceee
Q 003511 81 VYTACISSVISGVV-QGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 81 Vy~~~v~plV~~vl-~GyN~tIfAYGqTGSGKTyTM 115 (814)
|| .++......++ .|.|.||+.-|.+|||||.+.
T Consensus 69 if-aiA~~Ay~~m~~~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 69 IF-AIAEEAYKQMTRDEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred HH-HHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 55 23333333333 799999999999999999876
No 357
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=49.32 E-value=32 Score=37.38 Aligned_cols=58 Identities=19% Similarity=0.265 Sum_probs=36.1
Q ss_pred HHHHHhhhHhhhccCcceEEEeeccCCCCcceeeccCCCCCCchhhhHHHHHHHHhhcCCCCeEEEEEEEEE
Q 003511 82 YTACISSVISGVVQGLNATVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTIFDLIKKDKNSDEFEVSCSYLE 153 (814)
Q Consensus 82 y~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM~G~~~~~GIIpral~~LF~~i~~~~~~~~f~VsvSylE 153 (814)
|...+..+|.+.=..-+.+|.-+|+=|||||+.| +.+.+.+.......-+.|.++.++
T Consensus 4 ~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l--------------~~l~~~L~~~~~~~~~~i~fn~w~ 61 (325)
T PF07693_consen 4 YAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFL--------------NMLKEELKEDNKEKYIFIYFNAWE 61 (325)
T ss_pred HHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHH--------------HHHHHHHhcccccceeeEEEcccc
Confidence 4444444554432356788999999999999844 677777766522334445554444
No 358
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=49.32 E-value=13 Score=41.78 Aligned_cols=98 Identities=16% Similarity=0.186 Sum_probs=53.6
Q ss_pred EEEEEeCCCCCCcCCCCeEEE-eCCcEEEEECCCCCchhhhhccccCCcceeeeeeecCCCCCcHHHHHHHHhhhHhhhc
Q 003511 16 TVAIKCRPLTEREQGRDIVRV-KHDKEVVVLDPDFSKDYLDHIQNRTKEKNYCFDRAFGPGCTNLDVYTACISSVISGVV 94 (814)
Q Consensus 16 kV~VRvRPl~~~E~~~~~v~v-~~~~~Vvv~dp~~~~~~~~~~~~~~~~k~F~FD~VF~~~atQeeVy~~~v~plV~~vl 94 (814)
+-+|+||--.+++.-..=.+| .+=.++.++.--.....+...-.......|+||.|=+-...-.++-+.+.-|+++..|
T Consensus 78 ryvvg~~~~~D~~~i~~G~rv~ldittltIm~~lprevd~vy~m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~l 157 (388)
T KOG0651|consen 78 RYVVGCRRSVDKEKIARGTRVVLDITTLTIMRGLPREVDLVYNMSHEDPRNISFENVGGLFYQIRELREVIELPLTNPEL 157 (388)
T ss_pred cEEEEcccccchhhhccCceeeeeeeeeehhcccchHHHHHHHhhhcCccccCHHHhCChHHHHHHHHhheEeeccCchh
Confidence 334888887776641111111 1222333333111111111112234467899999987655555666666678887644
Q ss_pred -c--Ccc--eEEEeeccCCCCcce
Q 003511 95 -Q--GLN--ATVFAYGSTGSGKTY 113 (814)
Q Consensus 95 -~--GyN--~tIfAYGqTGSGKTy 113 (814)
. |.. -.+.-||+.|+|||+
T Consensus 158 f~rvgIk~Pkg~ll~GppGtGKTl 181 (388)
T KOG0651|consen 158 FLRVGIKPPKGLLLYGPPGTGKTL 181 (388)
T ss_pred ccccCCCCCceeEEeCCCCCchhH
Confidence 2 333 246899999999986
No 359
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=49.18 E-value=9.5 Score=40.09 Aligned_cols=19 Identities=37% Similarity=0.587 Sum_probs=13.1
Q ss_pred cceEEEeeccCCCCcceee
Q 003511 97 LNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 97 yN~tIfAYGqTGSGKTyTM 115 (814)
-+-.+++.|+.|||||+.-
T Consensus 18 ~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH
T ss_pred hCCeEEEECCCCCcHHHHH
Confidence 4457899999999999754
No 360
>PRK01156 chromosome segregation protein; Provisional
Probab=49.05 E-value=6.7e+02 Score=31.87 Aligned_cols=16 Identities=13% Similarity=0.303 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 003511 367 QRMIDNLQIEVCRLKK 382 (814)
Q Consensus 367 ~~~I~~L~~Ei~~Lk~ 382 (814)
...+..|..++..++.
T Consensus 422 ~~~i~~l~~~i~~l~~ 437 (895)
T PRK01156 422 SSKVSSLNQRIRALRE 437 (895)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 361
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=49.00 E-value=9.5 Score=37.25 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=18.4
Q ss_pred EEEeeccCCCCcceeeccCCCCCCchhhhHHHHHHH
Q 003511 100 TVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTIFDL 135 (814)
Q Consensus 100 tIfAYGqTGSGKTyTM~G~~~~~GIIpral~~LF~~ 135 (814)
.+--.|+||+||||+- ..+.+.||..
T Consensus 55 VlSfHG~tGtGKn~v~----------~liA~~ly~~ 80 (127)
T PF06309_consen 55 VLSFHGWTGTGKNFVS----------RLIAEHLYKS 80 (127)
T ss_pred EEEeecCCCCcHHHHH----------HHHHHHHHhc
Confidence 3445699999999953 3466677764
No 362
>PTZ00424 helicase 45; Provisional
Probab=48.90 E-value=8.8 Score=43.16 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=18.5
Q ss_pred hHhhhccCcceEEEeeccCCCCcceee
Q 003511 89 VISGVVQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 89 lV~~vl~GyN~tIfAYGqTGSGKTyTM 115 (814)
.+..+++|.|. +..++||||||.+.
T Consensus 58 ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 58 GIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 34456788885 46689999999764
No 363
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=48.89 E-value=10 Score=45.25 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=22.3
Q ss_pred HhhhHhhhccCcc--eEEEeeccCCCCcceee
Q 003511 86 ISSVISGVVQGLN--ATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 86 v~plV~~vl~GyN--~tIfAYGqTGSGKTyTM 115 (814)
++..++..+.|.. ..++.+|++|+|||.|+
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 4555666555543 46788999999999988
No 364
>PRK10869 recombination and repair protein; Provisional
Probab=48.78 E-value=5.6e+02 Score=30.95 Aligned_cols=9 Identities=56% Similarity=0.530 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 003511 424 LQNALFELE 432 (814)
Q Consensus 424 lq~~l~ele 432 (814)
++-++.|++
T Consensus 190 l~fql~Ei~ 198 (553)
T PRK10869 190 LQYQLKELN 198 (553)
T ss_pred HHHHHHHHH
Confidence 333334433
No 365
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=48.50 E-value=5.4e+02 Score=30.65 Aligned_cols=162 Identities=12% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH----HHHHHHHHHHHHHHhHHH
Q 003511 408 NVLSLEISENAQERIN-LQNALFELEETNLRIRAELQYLDDAIAKKQAIGKDDAVVEA----LKSRRQIILDNIRENDEA 482 (814)
Q Consensus 408 ~~l~~~~~e~~~e~~~-lq~~l~elee~~~~~~~e~~~l~~~~~~~~~~~k~~~~~e~----l~~~~q~l~~~~~~~~e~ 482 (814)
+..++++...+.+... +-.++..+..++.++.+.++....+....+..+........ +..-...|-...+++--+
T Consensus 252 ~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~ 331 (622)
T COG5185 252 EPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGK 331 (622)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhhHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhcc
Q 003511 483 GINYQKEIEENESRRCELQKMIDEAVSSNGNKTYLRILSQYRILGMANIELQFEMAMRDQVIHNQRAAQRQLWNLLMRSG 562 (814)
Q Consensus 483 ~~~~q~eie~~e~~~~~Le~~l~~~i~~~~~~~~~~lL~k~~~l~~~~~elq~e~~~r~~~I~~~r~~~~~lW~~l~~~~ 562 (814)
+..++.+|+..|++.+.|+...+.+-..-.++. .-.+++...-.+..+|-.++.+-.-.+...+..+...-..+.+.
T Consensus 332 l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~--Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~- 408 (622)
T COG5185 332 LEKLKSEIELKEEEIKALQSNIDELHKQLRKQG--ISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGI- 408 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHH-
Q ss_pred cchHHHHHHHHh
Q 003511 563 VDEKHLLDLAAK 574 (814)
Q Consensus 563 ~~~~~~~~~~~~ 574 (814)
-+.+.+...+
T Consensus 409 --~~slek~~~~ 418 (622)
T COG5185 409 --FKSLEKTLRQ 418 (622)
T ss_pred --HHHHHHHHHH
No 366
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=48.40 E-value=3.4e+02 Score=32.96 Aligned_cols=33 Identities=30% Similarity=0.377 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 410 LSLEISENAQERINLQNALFELEETNLRIRAEL 442 (814)
Q Consensus 410 l~~~~~e~~~e~~~lq~~l~elee~~~~~~~e~ 442 (814)
|+.++....+-..+|++++.++|++..+.+.++
T Consensus 341 LrgElea~kqak~Klee~i~elEEElk~~k~ea 373 (832)
T KOG2077|consen 341 LRGELEAVKQAKLKLEEKIRELEEELKKAKAEA 373 (832)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444556666666666655555543
No 367
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=48.38 E-value=3.4e+02 Score=28.29 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003511 490 IEENESRRCELQKMIDEA 507 (814)
Q Consensus 490 ie~~e~~~~~Le~~l~~~ 507 (814)
...++.+...|++.+...
T Consensus 93 k~~~e~~~~~l~~~~~~~ 110 (221)
T PF04012_consen 93 KADLEEQAERLEQQLDQA 110 (221)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 368
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=48.12 E-value=12 Score=41.37 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=19.8
Q ss_pred HhhhHhhhccCcceEEEeeccCCCCcceee
Q 003511 86 ISSVISGVVQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 86 v~plV~~vl~GyN~tIfAYGqTGSGKTyTM 115 (814)
+..++..++.+. ..|+-.|+||||||..|
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHH
Confidence 345566566544 34556699999999866
No 369
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=47.58 E-value=1.8e+02 Score=34.43 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003511 423 NLQNALFELEETNLRIRAELQYL 445 (814)
Q Consensus 423 ~lq~~l~elee~~~~~~~e~~~l 445 (814)
++++++.++..+|..++.|.+.|
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L 92 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERL 92 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566666666666665544
No 370
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=47.41 E-value=6e+02 Score=30.90 Aligned_cols=213 Identities=16% Similarity=0.158 Sum_probs=94.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhcC--ceecccccCCCCCCCC-
Q 003511 516 YLRILSQYRILGMANIELQFEMAMRDQVIHNQRAAQRQLWNLLMRSGVDEKHLLDLAAKHG--ITIEDWSMDSHVGLPE- 592 (814)
Q Consensus 516 ~~~lL~k~~~l~~~~~elq~e~~~r~~~I~~~r~~~~~lW~~l~~~~~~~~~~~~~~~~~~--~~~e~~~~~~~~~~~~- 592 (814)
.+++-++-.-|+-+.+|+..--.-|+.|-+++++.+.+.-+.-+-+ .+|+ +..| .+-+|-+..|+
T Consensus 655 rlrle~qRQrLERErmErERLEreRM~ve~eRr~eqeRihreReel-----------Rrqqetlrye-qerrP~~rrpyd 722 (940)
T KOG4661|consen 655 RLRLERQRQRLERERMERERLERERMKVEEERRDEQERIHREREEL-----------RRQQETLRYE-QERRPRFRRPYD 722 (940)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhHHHH-----------hhccceeeec-cCCCCCcCCccc
Confidence 3344444444555555665555566888888887676654432222 2222 2333 33344443332
Q ss_pred --ccCCCCCCCCCCCCCCCCCCCCcccCCCceeEe-cccCCccCCCCCCCCCcccchhhhhcccc----------ceecc
Q 003511 593 --RKKSMDFSPGRYTRSGCSPCIGQLYSRSSCIFQ-HHEDFSSRFSPAGLWDPARTVCREEHRRS----------YYFLS 659 (814)
Q Consensus 593 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 659 (814)
++.--++.... ---.-.-|+-+.-..- .||||.++. +|.++. +.+=|-|--+| |-.-.
T Consensus 723 lDrrdDaYwpe~k------r~a~~drY~sdf~R~D~rfhDfdhrd--RG~y~D-hs~DrregSrsmmgd~regqHyp~~~ 793 (940)
T KOG4661|consen 723 LDRRDDAYWPESK------RKAVLDRYSSDFKRLDYRFHDFDHRD--RGAYDD-HSNDRREGSRSMMGDYREGQHYPLSG 793 (940)
T ss_pred ccccccccCchhh------hhhHhhhhhccccccccccccccccc--cccccc-cccccccccccccccchhhcccCccC
Confidence 11111111111 0111223333322222 468888875 444433 23333332222 22223
Q ss_pred CCCCCccceecccccccccCCCCccccc----CCCCCccc--ccccccccccccCCCccCcCCCCCCCcccccccccccc
Q 003511 660 HDHSPSTYLKLRNCSEQWIDSTPGSWFE----TPGKHPQD--FRSSCPEIRTLASPFSESYLPASHHSADFCQLFKDVWN 733 (814)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (814)
|-|--|.|+.-+.+-++|.+--.--..+ -|-+ |.+ .-++.-...+ -.-..|+.++-..+-...+- -|.
T Consensus 794 ~~hGGp~erHgrdsrdGwgGygsdKr~seGrGlppp-pr~Rdwg~h~rR~d~---hs~r~wqgs~dgG~a~r~h~--rWq 867 (940)
T KOG4661|consen 794 TVHGGPSERHGRDSRDGWGGYGSDKRNSEGRGLPPP-PRDRDWGSHYRRDDS---HSLRRWQGSSDGGGAYRSHS--RWQ 867 (940)
T ss_pred ccCCCchhhccCccCCCcccccccccccCCCCCCCC-Cccccccccccccch---hhhhhhccCCCCcccccccc--ccc
Confidence 4455666999999999997643222221 1111 222 1111111111 01123332222222222221 188
Q ss_pred ccccCCCCCCCcceeecCCCcc
Q 003511 734 ITKRQNPLEGPQFEITSSPDFY 755 (814)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~ 755 (814)
--.|-|.+.+-.--|+|++-.+
T Consensus 868 GGers~sG~sGpGHm~nrgg~s 889 (940)
T KOG4661|consen 868 GGERSHSGSSGPGHMTNRGGKS 889 (940)
T ss_pred CCcccccCCCCCcccccccccc
Confidence 8888888877666777765443
No 371
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=46.93 E-value=4.6e+02 Score=29.37 Aligned_cols=38 Identities=21% Similarity=0.187 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 468 RRQIILDNIRENDEAGINYQKEIEENESRRCELQKMID 505 (814)
Q Consensus 468 ~~q~l~~~~~~~~e~~~~~q~eie~~e~~~~~Le~~l~ 505 (814)
+.+.+.+...+.-+.+.++-.++++++.+...+++++-
T Consensus 180 ki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~v 217 (294)
T COG1340 180 KIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFV 217 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444455555555555544443
No 372
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=46.84 E-value=32 Score=39.18 Aligned_cols=41 Identities=27% Similarity=0.447 Sum_probs=28.7
Q ss_pred hhHhhhccCcceEEEeeccCCCCcceeeccC------CCCCCchhhhHH
Q 003511 88 SVISGVVQGLNATVFAYGSTGSGKTYTMVGT------KSDPGLMVLSLH 130 (814)
Q Consensus 88 plV~~vl~GyN~tIfAYGqTGSGKTyTM~G~------~~~~GIIpral~ 130 (814)
.+|..+|+|.+| +-...||||||..+-++ .+..|+...++.
T Consensus 36 ~cIpkILeGrdc--ig~AkTGsGKT~AFaLPil~rLsedP~giFalvlT 82 (442)
T KOG0340|consen 36 ACIPKILEGRDC--IGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLT 82 (442)
T ss_pred hhhHHHhccccc--ccccccCCCcchhhhHHHHHhhccCCCcceEEEec
Confidence 345667899987 45678999999988775 233476665554
No 373
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=46.81 E-value=16 Score=41.49 Aligned_cols=28 Identities=39% Similarity=0.586 Sum_probs=21.3
Q ss_pred hhHhhhccCcc---eEEEeeccCCCCcceeec
Q 003511 88 SVISGVVQGLN---ATVFAYGSTGSGKTYTMV 116 (814)
Q Consensus 88 plV~~vl~GyN---~tIfAYGqTGSGKTyTM~ 116 (814)
|+++..|.|.- -|||+ |+||||||.-|.
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFls 291 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFLS 291 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEeh
Confidence 56667777763 47766 999999998774
No 374
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=46.71 E-value=4.6e+02 Score=29.37 Aligned_cols=17 Identities=29% Similarity=0.433 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003511 367 QRMIDNLQIEVCRLKKE 383 (814)
Q Consensus 367 ~~~I~~L~~Ei~~Lk~e 383 (814)
+..|.-|+.||..+|.+
T Consensus 5 q~eia~LrlEidtik~q 21 (305)
T PF14915_consen 5 QDEIAMLRLEIDTIKNQ 21 (305)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555543
No 375
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=46.63 E-value=14 Score=40.28 Aligned_cols=31 Identities=23% Similarity=0.346 Sum_probs=23.3
Q ss_pred HHHhhhHhhhccCcceEEEeeccCCCCcceee
Q 003511 84 ACISSVISGVVQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 84 ~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM 115 (814)
..+.|++ ..+.--+..|-.||+|++|||.++
T Consensus 180 afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 180 AFAAPLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHHHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 3345565 445666778889999999999876
No 376
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=46.61 E-value=14 Score=42.53 Aligned_cols=18 Identities=39% Similarity=0.547 Sum_probs=15.5
Q ss_pred ceEEEeeccCCCCcceee
Q 003511 98 NATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 98 N~tIfAYGqTGSGKTyTM 115 (814)
...|.-.||||-|||+|+
T Consensus 203 ~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 203 KRVIALVGPTGVGKTTTL 220 (407)
T ss_pred CcEEEEECCCCCcHHHHH
Confidence 556677899999999998
No 377
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=46.57 E-value=8.1 Score=42.31 Aligned_cols=16 Identities=44% Similarity=0.785 Sum_probs=13.4
Q ss_pred eEEEeeccCCCCccee
Q 003511 99 ATVFAYGSTGSGKTYT 114 (814)
Q Consensus 99 ~tIfAYGqTGSGKTyT 114 (814)
-.|+-||++|+|||.+
T Consensus 152 knVLFyGppGTGKTm~ 167 (368)
T COG1223 152 KNVLFYGPPGTGKTMM 167 (368)
T ss_pred ceeEEECCCCccHHHH
Confidence 3678999999999854
No 378
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=46.49 E-value=1.9e+02 Score=30.69 Aligned_cols=81 Identities=19% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 423 NLQNALFELEETNLRIRAELQYLDDAIAKKQAIGKDDAVVEALKSRRQIILDNIRENDEAGINYQKEIEENESRRCELQK 502 (814)
Q Consensus 423 ~lq~~l~elee~~~~~~~e~~~l~~~~~~~~~~~k~~~~~e~l~~~~q~l~~~~~~~~e~~~~~q~eie~~e~~~~~Le~ 502 (814)
.|+..+..+++....++.+++.+...-...|..... ....|+.++..++...-+.+.+...++.+|.+++.+..++++
T Consensus 140 ~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~--~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 140 QLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGE--ELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred HHH
Q 003511 503 MID 505 (814)
Q Consensus 503 ~l~ 505 (814)
..+
T Consensus 218 ~~~ 220 (221)
T PF05700_consen 218 NQQ 220 (221)
T ss_pred ccc
No 379
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=46.38 E-value=13 Score=40.24 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=16.0
Q ss_pred cCcceEEEeeccCCCCcceee
Q 003511 95 QGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 95 ~GyN~tIfAYGqTGSGKTyTM 115 (814)
.|...-++-||+.|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 344445788999999999765
No 380
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.30 E-value=4.1e+02 Score=31.15 Aligned_cols=20 Identities=10% Similarity=0.234 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHhccch
Q 003511 494 ESRRCELQKMIDEAVSSNGN 513 (814)
Q Consensus 494 e~~~~~Le~~l~~~i~~~~~ 513 (814)
+..-.+||++|.+++..+++
T Consensus 369 d~~de~lEkEL~~L~~D~~k 388 (439)
T KOG2911|consen 369 DFEDEDLEKELEDLEADEKK 388 (439)
T ss_pred ccchHHHHHHHHHHHhcccc
Confidence 33445677777766665543
No 381
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=46.00 E-value=9.4 Score=40.86 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=14.8
Q ss_pred ceEEEeeccCCCCcceee
Q 003511 98 NATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 98 N~tIfAYGqTGSGKTyTM 115 (814)
...++-||++|||||++.
T Consensus 42 ~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred cceEEEEcCCCCCHHHHH
Confidence 345788999999999865
No 382
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=45.92 E-value=6.2e+02 Score=30.62 Aligned_cols=16 Identities=13% Similarity=0.119 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 003511 369 MIDNLQIEVCRLKKEL 384 (814)
Q Consensus 369 ~I~~L~~Ei~~Lk~eL 384 (814)
.|..++.++..+...|
T Consensus 253 ~i~~i~~~l~~~~~~L 268 (560)
T PF06160_consen 253 EIEQIEEQLEEALALL 268 (560)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 383
>PF13166 AAA_13: AAA domain
Probab=45.79 E-value=6.5e+02 Score=30.84 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccC
Q 003511 364 SDYQRMIDNLQIEVCRLKKELADKD 388 (814)
Q Consensus 364 ~~~~~~I~~L~~Ei~~Lk~eL~~~~ 388 (814)
..+...+..+...+..++..|..+.
T Consensus 325 ~~~~~~~~~l~~~l~~l~~~L~~K~ 349 (712)
T PF13166_consen 325 EELKSAIEALKEELEELKKALEKKI 349 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666665543
No 384
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.65 E-value=4e+02 Score=28.34 Aligned_cols=37 Identities=11% Similarity=0.030 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhcccchHHH
Q 003511 529 ANIELQFEMAMRDQVIHNQRAAQRQLWNLLMRSGVDEKHL 568 (814)
Q Consensus 529 ~~~elq~e~~~r~~~I~~~r~~~~~lW~~l~~~~~~~~~~ 568 (814)
...|-...+.--+..|+++-+.+...|++|+.. +++.
T Consensus 144 ~RsEt~k~l~el~keleel~~~~~s~~~klelr---Rkqf 180 (222)
T KOG3215|consen 144 ARSETDKDLNELKKELEELDDLNNSTETKLELR---RKQF 180 (222)
T ss_pred CcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHH---hhcc
Confidence 344555566666777888888899999999987 5554
No 385
>PRK13764 ATPase; Provisional
Probab=45.47 E-value=9 Score=46.40 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=15.8
Q ss_pred ceEEEeeccCCCCcceeec
Q 003511 98 NATVFAYGSTGSGKTYTMV 116 (814)
Q Consensus 98 N~tIfAYGqTGSGKTyTM~ 116 (814)
...|+..|+||||||+++.
T Consensus 257 ~~~ILIsG~TGSGKTTll~ 275 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQ 275 (602)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3458899999999999883
No 386
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=45.41 E-value=1e+02 Score=29.23 Aligned_cols=47 Identities=28% Similarity=0.358 Sum_probs=35.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 407 LNVLSLEISENAQERINLQNALFELEETNLRIRAELQYLDDAIAKKQ 453 (814)
Q Consensus 407 l~~l~~~~~e~~~e~~~lq~~l~elee~~~~~~~e~~~l~~~~~~~~ 453 (814)
+..+++++.....+...|+..+.++.++|.+++.|.++|.+.+.+..
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666666667777888888999999999999998887766543
No 387
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=45.39 E-value=11 Score=43.26 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=17.5
Q ss_pred hhhccCcceEEEeeccCCCCccee
Q 003511 91 SGVVQGLNATVFAYGSTGSGKTYT 114 (814)
Q Consensus 91 ~~vl~GyN~tIfAYGqTGSGKTyT 114 (814)
..+++|.| +++.++||||||.+
T Consensus 33 ~~~~~g~d--~l~~apTGsGKT~~ 54 (434)
T PRK11192 33 PPALDGRD--VLGSAPTGTGKTAA 54 (434)
T ss_pred HHHhCCCC--EEEECCCCChHHHH
Confidence 34567877 77889999999976
No 388
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=45.39 E-value=13 Score=43.06 Aligned_cols=22 Identities=41% Similarity=0.607 Sum_probs=17.1
Q ss_pred hhhccCcceEEEeeccCCCCccee
Q 003511 91 SGVVQGLNATVFAYGSTGSGKTYT 114 (814)
Q Consensus 91 ~~vl~GyN~tIfAYGqTGSGKTyT 114 (814)
..+++|.| +++.++||||||.+
T Consensus 36 ~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 36 PAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHhcCCC--EEEECCCCCcHHHH
Confidence 34567887 67788999999965
No 389
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=44.79 E-value=8.7 Score=43.90 Aligned_cols=18 Identities=39% Similarity=0.458 Sum_probs=15.4
Q ss_pred ceEEEeeccCCCCcceee
Q 003511 98 NATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 98 N~tIfAYGqTGSGKTyTM 115 (814)
...+.-.|+||+|||+|+
T Consensus 137 g~ii~lvGptGvGKTTti 154 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTT 154 (374)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356778999999999987
No 390
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=44.75 E-value=13 Score=45.66 Aligned_cols=35 Identities=23% Similarity=0.362 Sum_probs=25.3
Q ss_pred HHHHHHHhhhHhhh-ccCcceEEEeeccCCCCcceee
Q 003511 80 DVYTACISSVISGV-VQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 80 eVy~~~v~plV~~v-l~GyN~tIfAYGqTGSGKTyTM 115 (814)
-||. ++......+ ..+.|.||+..|.+|||||.++
T Consensus 67 Hif~-~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 67 HIFA-VAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SHHH-HHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred ccch-hhhcccccccccccccceeeccccccccccch
Confidence 3663 344333333 3688999999999999999986
No 391
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=44.52 E-value=22 Score=43.51 Aligned_cols=47 Identities=23% Similarity=0.442 Sum_probs=30.8
Q ss_pred cCcceEEEeeccCCCCcceeeccCCCCCCchhhhHHHHHHHHhhcCCCCeEEEEEEEEEEec
Q 003511 95 QGLNATVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYN 156 (814)
Q Consensus 95 ~GyN~tIfAYGqTGSGKTyTM~G~~~~~GIIpral~~LF~~i~~~~~~~~f~VsvSylEIYn 156 (814)
+|-.+|+..-|..|||||.|+.+ ++..|-...++.. -.. +.|+||-.
T Consensus 419 ~~~g~~mYIsGvPGtGKT~tV~~----------Vm~~Lq~~s~~~e-~p~----f~yveINg 465 (767)
T KOG1514|consen 419 QGLGSCMYISGVPGTGKTATVLE----------VMKELQTSSAQKE-LPK----FDYVEING 465 (767)
T ss_pred CCCceeEEEecCCCCCceehHHH----------HHHHHHHHHhhcC-CCC----ccEEEEcc
Confidence 47777999999999999999843 5555554443322 222 24777653
No 392
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=44.46 E-value=7.4 Score=47.99 Aligned_cols=10 Identities=20% Similarity=0.421 Sum_probs=5.2
Q ss_pred hHHHHHHHHh
Q 003511 128 SLHTIFDLIK 137 (814)
Q Consensus 128 al~~LF~~i~ 137 (814)
++.+++..|.
T Consensus 36 ~L~evL~qID 45 (713)
T PF05622_consen 36 ALAEVLHQID 45 (713)
T ss_dssp HHHHHHHHH-
T ss_pred HHHHHHHHhC
Confidence 4556666554
No 393
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=44.38 E-value=5.9e+02 Score=29.88 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=16.8
Q ss_pred CCCCcccchhhhhccccce-----eccCCCCCccceeccccccc
Q 003511 638 GLWDPARTVCREEHRRSYY-----FLSHDHSPSTYLKLRNCSEQ 676 (814)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 676 (814)
..|.-...-| |-+++-| +.+-++.++-+.-+.-++++
T Consensus 200 k~W~v~~~k~--~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~ 241 (459)
T KOG0288|consen 200 KLWNVLGEKS--ELISTLAGSLGNITSIDFDSDNKHVIAASNDK 241 (459)
T ss_pred hhhhcccchh--hhhhhhhccCCCcceeeecCCCceEEeecCCC
Confidence 4566555442 3333333 23334445555555555544
No 394
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=44.33 E-value=55 Score=32.32 Aligned_cols=13 Identities=8% Similarity=0.251 Sum_probs=7.8
Q ss_pred ccccC-CCCccccc
Q 003511 675 EQWID-STPGSWFE 687 (814)
Q Consensus 675 ~~~~~-~~~~~~~~ 687 (814)
+.|+| ||.-.||-
T Consensus 107 kTWTGrGR~P~wi~ 120 (134)
T PRK10328 107 KTWTGQGRTPKPIA 120 (134)
T ss_pred CcccCCCCCcHHHH
Confidence 56666 56666664
No 395
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=44.29 E-value=3.7e+02 Score=29.25 Aligned_cols=46 Identities=15% Similarity=0.053 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 460 AVVEALKSRRQIILDNIRENDEAGINYQKEIEENESRRCELQKMID 505 (814)
Q Consensus 460 ~~~e~l~~~~q~l~~~~~~~~e~~~~~q~eie~~e~~~~~Le~~l~ 505 (814)
.+...+.++++...+...+.++.....+.++..++.+...|+..--
T Consensus 79 siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~ 124 (248)
T PF08172_consen 79 SILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNV 124 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666666655555555533
No 396
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=44.14 E-value=5.9e+02 Score=29.86 Aligned_cols=12 Identities=17% Similarity=0.152 Sum_probs=5.4
Q ss_pred HHHHHHHHHHhc
Q 003511 277 LLALANCINALG 288 (814)
Q Consensus 277 L~aLg~VI~aLs 288 (814)
+..|++-|..|.
T Consensus 45 ~e~l~~rv~sls 56 (552)
T KOG2129|consen 45 GESLGARVSSLS 56 (552)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 397
>PRK10536 hypothetical protein; Provisional
Probab=43.93 E-value=13 Score=40.49 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=26.8
Q ss_pred eeeeeeecCCCCCcHHHHHHHHhhhHhhhccCcceEEEeeccCCCCcceee
Q 003511 65 NYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 65 ~F~FD~VF~~~atQeeVy~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM 115 (814)
.|.|..+-+-+..|...... +.+ +.-|+..|++||||||..
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~a--------l~~--~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLKA--------IES--KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred hcCCccccCCCHHHHHHHHH--------Hhc--CCeEEEECCCCCCHHHHH
Confidence 45666666666555544431 223 347899999999999865
No 398
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=43.81 E-value=9.3 Score=39.13 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=13.3
Q ss_pred ceEEEeeccCCCCcceee
Q 003511 98 NATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 98 N~tIfAYGqTGSGKTyTM 115 (814)
-..+|..|+.|||||+++
T Consensus 15 P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp -EEEEEES-TTSTTHHHH
T ss_pred CEEEEEeCCCCCCHHHHH
Confidence 356888899999998755
No 399
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=43.66 E-value=19 Score=40.27 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=14.5
Q ss_pred eEEEeeccCCCCcceee
Q 003511 99 ATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 99 ~tIfAYGqTGSGKTyTM 115 (814)
..|.-.|++|+|||.|+
T Consensus 115 ~vi~lvGpnGsGKTTt~ 131 (318)
T PRK10416 115 FVILVVGVNGVGKTTTI 131 (318)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46667799999999987
No 400
>PLN03025 replication factor C subunit; Provisional
Probab=43.56 E-value=15 Score=40.55 Aligned_cols=42 Identities=24% Similarity=0.425 Sum_probs=24.5
Q ss_pred eeeeecCCCCCcHHHHHHHHhhhHhhhccCcceEEEeeccCCCCcceeec
Q 003511 67 CFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTMV 116 (814)
Q Consensus 67 ~FD~VF~~~atQeeVy~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM~ 116 (814)
+||.|.+ |+++... +..++. .|.-.-++-||++|+|||++..
T Consensus 11 ~l~~~~g----~~~~~~~-L~~~~~---~~~~~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 11 KLDDIVG----NEDAVSR-LQVIAR---DGNMPNLILSGPPGTGKTTSIL 52 (319)
T ss_pred CHHHhcC----cHHHHHH-HHHHHh---cCCCceEEEECCCCCCHHHHHH
Confidence 4555553 4455432 333332 2332346669999999998774
No 401
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=43.46 E-value=8.7 Score=42.90 Aligned_cols=17 Identities=41% Similarity=0.618 Sum_probs=14.0
Q ss_pred EEEeeccCCCCcceeec
Q 003511 100 TVFAYGSTGSGKTYTMV 116 (814)
Q Consensus 100 tIfAYGqTGSGKTyTM~ 116 (814)
....||+|||||++.+-
T Consensus 89 I~~VYGPTG~GKSqLlR 105 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLR 105 (369)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 34579999999999774
No 402
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=43.07 E-value=14 Score=37.73 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=18.0
Q ss_pred hhhccCc---ceEEEeeccCCCCcceee
Q 003511 91 SGVVQGL---NATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 91 ~~vl~Gy---N~tIfAYGqTGSGKTyTM 115 (814)
|.++.|- ...+.-||++|||||...
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3445443 567889999999998643
No 403
>COG5293 Predicted ATPase [General function prediction only]
Probab=42.93 E-value=6.5e+02 Score=29.97 Aligned_cols=24 Identities=8% Similarity=-0.036 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHHhHhHHHHHHHH
Q 003511 527 GMANIELQFEMAMRDQVIHNQRAA 550 (814)
Q Consensus 527 ~~~~~elq~e~~~r~~~I~~~r~~ 550 (814)
++.+.|.|.+-++...++.--+.+
T Consensus 427 ~r~y~e~q~q~~~~~~~~~lF~~~ 450 (591)
T COG5293 427 ERIYTEVQQQCSLFASIGRLFKEM 450 (591)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHH
Confidence 356777888877666554443333
No 404
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=42.85 E-value=8.2e+02 Score=31.16 Aligned_cols=20 Identities=15% Similarity=0.345 Sum_probs=8.2
Q ss_pred HhHhHHHHHHHHHHHHHHHH
Q 003511 539 MRDQVIHNQRAAQRQLWNLL 558 (814)
Q Consensus 539 ~r~~~I~~~r~~~~~lW~~l 558 (814)
++.+-+++.|....++-.++
T Consensus 1089 L~ehelenLrnEieklndkI 1108 (1424)
T KOG4572|consen 1089 LKEHELENLRNEIEKLNDKI 1108 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444444444344444433
No 405
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=42.79 E-value=5.4e+02 Score=29.02 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 003511 365 DYQRMIDNLQIEVCRLKKELAD 386 (814)
Q Consensus 365 ~~~~~I~~L~~Ei~~Lk~eL~~ 386 (814)
.+...+..|+.+...||.+|..
T Consensus 24 ~l~~~~~sL~qen~~Lk~El~~ 45 (310)
T PF09755_consen 24 QLRKRIESLQQENRVLKRELET 45 (310)
T ss_pred HHHHHHHHHHHHhHHHHHHHHH
Confidence 4455566666666666666543
No 406
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=42.57 E-value=12 Score=42.70 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=17.1
Q ss_pred hhhccCcceEEEeeccCCCCcceee
Q 003511 91 SGVVQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 91 ~~vl~GyN~tIfAYGqTGSGKTyTM 115 (814)
..+++|.|. ++-++||||||.+.
T Consensus 40 p~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 40 PLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHhCCCcE--EEECCCCchHHHHH
Confidence 345788874 56679999999753
No 407
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=42.57 E-value=1.9e+02 Score=38.88 Aligned_cols=56 Identities=21% Similarity=0.154 Sum_probs=37.4
Q ss_pred CCCCCCCCCcccCCCceeEecccCCccCCCCCCCCCcccchhhhhccccceeccCCCCCccceeccc
Q 003511 606 RSGCSPCIGQLYSRSSCIFQHHEDFSSRFSPAGLWDPARTVCREEHRRSYYFLSHDHSPSTYLKLRN 672 (814)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (814)
-....+-.+|+|+.++.-.-+ ++-++++--| ++||..-|.-||...-.-+-+|..+
T Consensus 180 ~ta~~~s~s~~~~~s~vets~-----sllsml~t~D------~ee~ar~fLemSss~esCaamR~Sg 235 (2195)
T KOG2122|consen 180 NTAGSGSYSQPRAGSSVETSN-----SLLSMLGTDD------EEEMARTFLEMSSSPESCAAMRRSG 235 (2195)
T ss_pred CCCCCCccCccccccchhhhh-----HHhhhcccCC------HHHHHHHHHHhccCchhhHHHHhcc
Confidence 355667778899998875442 5556666544 6899999999988744444444433
No 408
>PF05729 NACHT: NACHT domain
Probab=42.56 E-value=10 Score=36.25 Aligned_cols=16 Identities=31% Similarity=0.611 Sum_probs=13.7
Q ss_pred EEEeeccCCCCcceee
Q 003511 100 TVFAYGSTGSGKTYTM 115 (814)
Q Consensus 100 tIfAYGqTGSGKTyTM 115 (814)
.++.+|..|+|||..|
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 4678999999999866
No 409
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=42.55 E-value=16 Score=45.41 Aligned_cols=18 Identities=50% Similarity=0.691 Sum_probs=15.1
Q ss_pred ceEEEeeccCCCCcceee
Q 003511 98 NATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 98 N~tIfAYGqTGSGKTyTM 115 (814)
|-.|+.+|+||||||+-+
T Consensus 271 n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQV 288 (1172)
T ss_pred CCeEEEecCCCCCccccc
Confidence 446778899999999877
No 410
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=42.29 E-value=8.3 Score=46.79 Aligned_cols=77 Identities=16% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH---HH--HHHHHhhhhhHHHHHHH-HHHhHhHHHHHHHHHHHHH
Q 003511 482 AGINYQKEIEENESRRCELQKMIDEAVSSNGNKTYL---RI--LSQYRILGMANIELQFE-MAMRDQVIHNQRAAQRQLW 555 (814)
Q Consensus 482 ~~~~~q~eie~~e~~~~~Le~~l~~~i~~~~~~~~~---~l--L~k~~~l~~~~~elq~e-~~~r~~~I~~~r~~~~~lW 555 (814)
...+.+..++.+..+...|++.|+.-.. +.+.++ .. ......++.+..-|+.- ...-+.+|...|..+..+|
T Consensus 222 ~k~~r~~~~~~l~~~i~~LW~~L~~~~e--e~~~F~~~~~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elW 299 (619)
T PF03999_consen 222 EKEEREEKLQELREKIEELWNRLDVPEE--EREAFLEENSGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELW 299 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3344556667777777788887773222 112111 11 11111122222222221 2345567888888899999
Q ss_pred HHHHh
Q 003511 556 NLLMR 560 (814)
Q Consensus 556 ~~l~~ 560 (814)
+++.-
T Consensus 300 d~~~~ 304 (619)
T PF03999_consen 300 DKCHY 304 (619)
T ss_dssp -----
T ss_pred HHhCC
Confidence 98864
No 411
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=42.22 E-value=17 Score=42.75 Aligned_cols=31 Identities=16% Similarity=0.304 Sum_probs=21.4
Q ss_pred cCCCCcceeEEEeeCCCCCChHHHHHHHHHHHHHh
Q 003511 312 GLSGNSQTVMVATISPVDSQYHHTLNTLKYADRAK 346 (814)
Q Consensus 312 sLGGnskT~mIatISPs~~~~eETlsTLrfA~Rak 346 (814)
.+.-..+..+|||++..+. ++..|.+|-|=|
T Consensus 319 ~f~iP~Nl~IIgTMNt~Dr----s~~~lD~AlrRR 349 (459)
T PRK11331 319 RFYVPENVYIIGLMNTADR----SLAVVDYALRRR 349 (459)
T ss_pred cccCCCCeEEEEecCcccc----chhhccHHHHhh
Confidence 3455788999999998874 445666664433
No 412
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=42.19 E-value=3.4e+02 Score=26.48 Aligned_cols=26 Identities=31% Similarity=0.254 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 483 GINYQKEIEENESRRCELQKMIDEAV 508 (814)
Q Consensus 483 ~~~~q~eie~~e~~~~~Le~~l~~~i 508 (814)
+..+++..+.++++..+|+.+|..+.
T Consensus 86 i~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 86 IKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555555555555555444
No 413
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=42.01 E-value=1.8e+02 Score=31.26 Aligned_cols=63 Identities=16% Similarity=0.272 Sum_probs=35.9
Q ss_pred ceeEEEeeCCCCCChHHHHHHHHHHHHHhhcccccccccccccccchHHHHHHHHHHHHHHHHHHHHhc
Q 003511 318 QTVMVATISPVDSQYHHTLNTLKYADRAKKIKTHIQKNIGSIDTHVSDYQRMIDNLQIEVCRLKKELAD 386 (814)
Q Consensus 318 kT~mIatISPs~~~~eETlsTLrfA~Rak~Ikn~~~~N~~~~~~~~~~~~~~I~~L~~Ei~~Lk~eL~~ 386 (814)
...|..-|-+ ..+++.+..|. ..-.+... ..+...+.....|.+..++.|+.+..+|.+-|..
T Consensus 95 ~~~ltiRVP~--~~~~~~l~~l~---~~g~v~~~-~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~k 157 (262)
T PF14257_consen 95 SASLTIRVPA--DKFDSFLDELS---ELGKVTSR-NISSEDVTEQYVDLEARLKNLEAEEERLLELLEK 157 (262)
T ss_pred eEEEEEEECH--HHHHHHHHHHh---ccCceeee-eccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455543 56788777776 11222221 1222333345557777888888888888777664
No 414
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=41.82 E-value=2.3e+02 Score=26.14 Aligned_cols=39 Identities=33% Similarity=0.360 Sum_probs=27.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003511 472 ILDNIRENDEAGINYQKEIEENESRRCELQKMIDEAVSS 510 (814)
Q Consensus 472 l~~~~~~~~e~~~~~q~eie~~e~~~~~Le~~l~~~i~~ 510 (814)
.++.+.+.+++...++.+++.+..++..+-..+.++...
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~ 65 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKA 65 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhC
Confidence 344555556666777888888888888888887766654
No 415
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=41.74 E-value=13 Score=48.39 Aligned_cols=29 Identities=31% Similarity=0.472 Sum_probs=20.1
Q ss_pred hhHhhhccCcceEEEeeccCCCCcceeecc
Q 003511 88 SVISGVVQGLNATVFAYGSTGSGKTYTMVG 117 (814)
Q Consensus 88 plV~~vl~GyN~tIfAYGqTGSGKTyTM~G 117 (814)
.+++.+.+|....++ ..+||||||+||.+
T Consensus 424 ai~~a~~~g~r~~Ll-~maTGSGKT~tai~ 452 (1123)
T PRK11448 424 AVEKAIVEGQREILL-AMATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHHhccCCeEE-EeCCCCCHHHHHHH
Confidence 344455567655444 48999999999875
No 416
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=41.56 E-value=14 Score=42.86 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=18.2
Q ss_pred HhhhccCcceEEEeeccCCCCcceee
Q 003511 90 ISGVVQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 90 V~~vl~GyN~tIfAYGqTGSGKTyTM 115 (814)
+..+++|.| |++-.+||||||.+.
T Consensus 32 i~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 32 IPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 344567887 577789999999763
No 417
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=41.52 E-value=8e+02 Score=30.63 Aligned_cols=216 Identities=15% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCC-----CCCCCcchhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 365 DYQRMIDNLQIEVCRLKKELADKDS-----QPSVKPAEKAADDELSWLNVLSLEISENAQERINLQNALFELEETNLRIR 439 (814)
Q Consensus 365 ~~~~~I~~L~~Ei~~Lk~eL~~~~~-----~~~~~~~~~~~~~e~~~l~~l~~~~~e~~~e~~~lq~~l~elee~~~~~~ 439 (814)
.|...+.+|+.|+.+=+-.-..... +...+.......+-...+..+..++.........+-+.+..|++.+.+++
T Consensus 468 ~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lr 547 (786)
T PF05483_consen 468 HYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLR 547 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--c
Q 003511 440 AELQYLDDAIAKKQA-----IGKDDAVVEALKSRRQIILDNIRENDEAGINYQKEIEENESRRCELQKMIDEAVSSN--G 512 (814)
Q Consensus 440 ~e~~~l~~~~~~~~~-----~~k~~~~~e~l~~~~q~l~~~~~~~~e~~~~~q~eie~~e~~~~~Le~~l~~~i~~~--~ 512 (814)
.++..+...+.+... ..+..+-...+.-........+.-....+..+++.++.......+|+++-..+-... +
T Consensus 548 neles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE 627 (786)
T PF05483_consen 548 NELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAE 627 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCceec
Q 003511 513 NKTYLRILSQYRILGMANIELQFEMAMRDQVIHNQRAAQRQLWNLLMRSGVDEKHLLDLAAKHGITIE 580 (814)
Q Consensus 513 ~~~~~~lL~k~~~l~~~~~elq~e~~~r~~~I~~~r~~~~~lW~~l~~~~~~~~~~~~~~~~~~~~~e 580 (814)
....-.+-.++.-|..+...++....-.-+.+...-+--.-+-+-|++-+---+.++|=|.+..-++|
T Consensus 628 ~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~~EveK~k~~a~EAvK~q~Etd 695 (786)
T PF05483_consen 628 SKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELLGEVEKAKLTADEAVKLQEETD 695 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHH
No 418
>PRK04328 hypothetical protein; Provisional
Probab=41.44 E-value=17 Score=38.90 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=21.4
Q ss_pred hhhHhhhccC---cceEEEeeccCCCCcce
Q 003511 87 SSVISGVVQG---LNATVFAYGSTGSGKTY 113 (814)
Q Consensus 87 ~plV~~vl~G---yN~tIfAYGqTGSGKTy 113 (814)
-+-+|.++.| ...+++.+|.+|||||.
T Consensus 9 i~~LD~lL~GGip~gs~ili~G~pGsGKT~ 38 (249)
T PRK04328 9 IPGMDEILYGGIPERNVVLLSGGPGTGKSI 38 (249)
T ss_pred chhHHHHhcCCCcCCcEEEEEcCCCCCHHH
Confidence 3456777876 47888999999999974
No 419
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.41 E-value=7.3e+02 Score=30.14 Aligned_cols=26 Identities=15% Similarity=0.069 Sum_probs=15.1
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHH
Q 003511 531 IELQFEMAMRDQVIHNQRAAQRQLWN 556 (814)
Q Consensus 531 ~elq~e~~~r~~~I~~~r~~~~~lW~ 556 (814)
.++....+.-.+++++++.-..+|+.
T Consensus 531 ~~tkarl~stqqslaEke~HL~nLr~ 556 (654)
T KOG4809|consen 531 DATKARLASTQQSLAEKEAHLANLRI 556 (654)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666677777765555543
No 420
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=41.27 E-value=9.8 Score=36.03 Aligned_cols=15 Identities=47% Similarity=0.822 Sum_probs=12.6
Q ss_pred EEeeccCCCCcceee
Q 003511 101 VFAYGSTGSGKTYTM 115 (814)
Q Consensus 101 IfAYGqTGSGKTyTM 115 (814)
++-+|++|+|||+.+
T Consensus 2 ~~i~G~~G~GKT~l~ 16 (165)
T cd01120 2 ILVFGPTGSGKTTLA 16 (165)
T ss_pred eeEeCCCCCCHHHHH
Confidence 467899999999865
No 421
>PF13514 AAA_27: AAA domain
Probab=41.08 E-value=9.7e+02 Score=31.48 Aligned_cols=10 Identities=20% Similarity=0.295 Sum_probs=5.7
Q ss_pred eeeeeecCCC
Q 003511 66 YCFDRAFGPG 75 (814)
Q Consensus 66 F~FD~VF~~~ 75 (814)
-.|+.+|+-+
T Consensus 87 ~~f~~iF~~d 96 (1111)
T PF13514_consen 87 ETFEAIFSFD 96 (1111)
T ss_pred HHHHHHHcCC
Confidence 3566666544
No 422
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=41.01 E-value=11 Score=44.45 Aligned_cols=50 Identities=16% Similarity=0.221 Sum_probs=28.3
Q ss_pred eeeeeeecCCCCCcHHHHHHHHhhhHhh-hc----cCcceEEEeeccCCCCcceee
Q 003511 65 NYCFDRAFGPGCTNLDVYTACISSVISG-VV----QGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 65 ~F~FD~VF~~~atQeeVy~~~v~plV~~-vl----~GyN~tIfAYGqTGSGKTyTM 115 (814)
..+||.|.+.+...+++.+ ++..+... .+ ....-.|+-||++|||||+..
T Consensus 51 ~~~~~di~g~~~~k~~l~~-~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELME-IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCHHHhCCHHHHHHHHHH-HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHH
Confidence 5678888775544444432 22222110 11 112235888999999999876
No 423
>PRK11519 tyrosine kinase; Provisional
Probab=40.66 E-value=8.2e+02 Score=30.50 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=17.6
Q ss_pred CcceeEEEeeCCCCCChHHHHHHH
Q 003511 316 NSQTVMVATISPVDSQYHHTLNTL 339 (814)
Q Consensus 316 nskT~mIatISPs~~~~eETlsTL 339 (814)
++.++-|..-++++.-....+++|
T Consensus 226 ~S~ii~Is~~~~dP~~Aa~iaN~l 249 (719)
T PRK11519 226 DTGVLSLTYTGEDREQIRDILNSI 249 (719)
T ss_pred CceEEEEEEEcCCHHHHHHHHHHH
Confidence 466777777788877777777777
No 424
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=40.61 E-value=1.3e+02 Score=28.85 Aligned_cols=45 Identities=27% Similarity=0.265 Sum_probs=34.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 407 LNVLSLEISENAQERINLQNALFELEETNLRIRAELQYLDDAIAK 451 (814)
Q Consensus 407 l~~l~~~~~e~~~e~~~lq~~l~elee~~~~~~~e~~~l~~~~~~ 451 (814)
+..+++++.....+...|+..+.++.++|.+++.|.++|.+.+.+
T Consensus 10 l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666677778888889999999999999888877664
No 425
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=40.60 E-value=1.1e+02 Score=26.51 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHh
Q 003511 528 MANIELQFEMAMRDQVIHNQRAAQRQLWNLLMRSGVDEKHLLDLAAK 574 (814)
Q Consensus 528 ~~~~elq~e~~~r~~~I~~~r~~~~~lW~~l~~~~~~~~~~~~~~~~ 574 (814)
.-..+|+..++.-+..|++..+++.++|..|..+ +.++..+..+
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L---~~~l~~L~~r 47 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRL---QRQLRLLRER 47 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3455677788888888888888888888888888 6665555444
No 426
>PRK04195 replication factor C large subunit; Provisional
Probab=40.41 E-value=16 Score=42.86 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=21.6
Q ss_pred HhhhHhhhccCc-ceEEEeeccCCCCcceee
Q 003511 86 ISSVISGVVQGL-NATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 86 v~plV~~vl~Gy-N~tIfAYGqTGSGKTyTM 115 (814)
+..++.....|. .-.++-||++|+|||++.
T Consensus 26 l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 26 LREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 445555555554 456888999999999765
No 427
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=40.40 E-value=7.3e+02 Score=29.88 Aligned_cols=17 Identities=53% Similarity=0.231 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003511 417 NAQERINLQNALFELEE 433 (814)
Q Consensus 417 ~~~e~~~lq~~l~elee 433 (814)
..++...++.++.++++
T Consensus 187 ~~~eld~L~~ql~ELe~ 203 (563)
T TIGR00634 187 LAQRLDFLQFQLEELEE 203 (563)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33334445555555554
No 428
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=40.38 E-value=5.5e+02 Score=28.46 Aligned_cols=11 Identities=27% Similarity=0.552 Sum_probs=5.7
Q ss_pred HHHHHHHHhcC
Q 003511 279 ALANCINALGK 289 (814)
Q Consensus 279 aLg~VI~aLs~ 289 (814)
.|..++.+.++
T Consensus 177 rlr~a~eafg~ 187 (445)
T KOG2891|consen 177 RLRKAFEAFGE 187 (445)
T ss_pred HHHHHHHHhcc
Confidence 34555555544
No 429
>PRK14151 heat shock protein GrpE; Provisional
Probab=40.09 E-value=4e+02 Score=27.52 Aligned_cols=28 Identities=7% Similarity=0.037 Sum_probs=16.9
Q ss_pred hcccchHHHHHHHHhcCcee---cccccCCC
Q 003511 560 RSGVDEKHLLDLAAKHGITI---EDWSMDSH 587 (814)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~---e~~~~~~~ 587 (814)
+.-+-.+++.++..++||+. .|.+.||+
T Consensus 103 Gv~mi~k~l~~~L~k~Gv~~i~~~G~~FDP~ 133 (176)
T PRK14151 103 GVELTLKMFQDTLKRYQLEAVDPHGEPFNPE 133 (176)
T ss_pred HHHHHHHHHHHHHHHCCCEEeCCCCCCCCHH
Confidence 33334667777888888853 34455544
No 430
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=40.02 E-value=2.9e+02 Score=25.08 Aligned_cols=38 Identities=24% Similarity=0.262 Sum_probs=25.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 407 LNVLSLEISENAQERINLQNALFELEETNLRIRAELQY 444 (814)
Q Consensus 407 l~~l~~~~~e~~~e~~~lq~~l~elee~~~~~~~e~~~ 444 (814)
++.++.++..+++...-||..+.++.+.|..+..+.+.
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666777777777777666665543
No 431
>PRK13342 recombination factor protein RarA; Reviewed
Probab=39.60 E-value=13 Score=42.67 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=16.1
Q ss_pred cCcceEEEeeccCCCCcceee
Q 003511 95 QGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 95 ~GyN~tIfAYGqTGSGKTyTM 115 (814)
.+.-..++-||++|+|||++.
T Consensus 33 ~~~~~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 33 AGRLSSMILWGPPGTGKTTLA 53 (413)
T ss_pred cCCCceEEEECCCCCCHHHHH
Confidence 455456777999999999755
No 432
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=39.59 E-value=17 Score=44.54 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=21.5
Q ss_pred HHhhhHhhhcc-----CcceEEEeeccCCCCcceeecc
Q 003511 85 CISSVISGVVQ-----GLNATVFAYGSTGSGKTYTMVG 117 (814)
Q Consensus 85 ~v~plV~~vl~-----GyN~tIfAYGqTGSGKTyTM~G 117 (814)
.+..+++.+.. |.+..|+. -+||||||+||..
T Consensus 246 av~~~~~~~~~~~~~~~~~~gli~-~~TGsGKT~t~~~ 282 (667)
T TIGR00348 246 AVKKIVESITRKTWGKDERGGLIW-HTQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHHHhcccCCCCceeEEE-EecCCCccHHHHH
Confidence 35566666665 34455544 4899999999953
No 433
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=39.46 E-value=9.3e+02 Score=30.83 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=12.3
Q ss_pred eEEEeeccCCCCcceee
Q 003511 99 ATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 99 ~tIfAYGqTGSGKTyTM 115 (814)
+..+-+|+||||||..|
T Consensus 26 gi~lI~G~nGsGKSSIl 42 (908)
T COG0419 26 GIFLIVGPNGAGKSSIL 42 (908)
T ss_pred CeEEEECCCCCcHHHHH
Confidence 34456799999997543
No 434
>PF13173 AAA_14: AAA domain
Probab=39.26 E-value=12 Score=35.47 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=13.9
Q ss_pred EEEeeccCCCCcceee
Q 003511 100 TVFAYGSTGSGKTYTM 115 (814)
Q Consensus 100 tIfAYGqTGSGKTyTM 115 (814)
.++-+|+.|+|||+.|
T Consensus 4 ~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLL 19 (128)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5678999999999866
No 435
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=39.22 E-value=12 Score=37.03 Aligned_cols=17 Identities=35% Similarity=0.628 Sum_probs=13.8
Q ss_pred eEEEeeccCCCCcceee
Q 003511 99 ATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 99 ~tIfAYGqTGSGKTyTM 115 (814)
+..+-||++|+|||..|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45567899999999866
No 436
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=39.19 E-value=1.2e+02 Score=34.90 Aligned_cols=107 Identities=21% Similarity=0.343 Sum_probs=0.0
Q ss_pred cCcceEEEeeccCCCCcceeeccCCCCCCchhhhHHHHHHH----------HhhcCCCCeEEEEEEEEEEecceeeeccc
Q 003511 95 QGLNATVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTIFDL----------IKKDKNSDEFEVSCSYLEVYNEVIYDLLE 164 (814)
Q Consensus 95 ~GyN~tIfAYGqTGSGKTyTM~G~~~~~GIIpral~~LF~~----------i~~~~~~~~f~VsvSylEIYnE~I~DLL~ 164 (814)
.|+.-+|++.|+.|+|||. +++.||.. +..........+..+-.+|-.+
T Consensus 20 ~Gi~f~im~~G~sG~GKtt--------------fiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~------- 78 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTT--------------FINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEED------- 78 (373)
T ss_pred cCCceEEEEecCCCCchhH--------------HHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecC-------
Q ss_pred cccCcceeeecCCCCeeecCeEEEEecChHHHHHHHHhhhhcCCCccccCCCC----CCCCeEEEEE
Q 003511 165 KSSAHLELREDPMHGIVVAGLRCIKVHSADKILELLNLGNSRRKTENTEANGT----SSRSHAVLEI 227 (814)
Q Consensus 165 ~~~~~L~ired~~~g~~V~gLtev~V~S~ee~~~lL~~G~~~R~~~~T~~N~~----SSRSHaIftI 227 (814)
.-.-.+.+-+.|.-|=.|.+ -.+++-+..+|+.-....-....+.... =.|=|+.+-+
T Consensus 79 ~~~~~l~vIDtpGfGD~idN-----s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYF 140 (373)
T COG5019 79 GFHLNLTVIDTPGFGDFIDN-----SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYF 140 (373)
T ss_pred CeEEEEEEeccCCccccccc-----cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEE
No 437
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=39.14 E-value=7.8e+02 Score=29.83 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003511 425 QNALFELEETNLRIRAELQYL 445 (814)
Q Consensus 425 q~~l~elee~~~~~~~e~~~l 445 (814)
-..+....+.+..+..++..+
T Consensus 315 ~~~l~k~ke~n~~L~~Eie~V 335 (570)
T COG4477 315 PDYLEKAKENNEHLKEEIERV 335 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555443
No 438
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=39.04 E-value=14 Score=40.34 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=14.4
Q ss_pred ceEEEeeccCCCCcceee
Q 003511 98 NATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 98 N~tIfAYGqTGSGKTyTM 115 (814)
+--|+-.|++|||||-++
T Consensus 33 ~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp TEEEEEESSTTSSHHHHH
T ss_pred CCcEEEECCCCCchhHHH
Confidence 446688899999998654
No 439
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=38.87 E-value=3.6e+02 Score=25.92 Aligned_cols=37 Identities=19% Similarity=0.139 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003511 465 LKSRRQIILDNIRENDEAGINYQKEIEENESRRCELQ 501 (814)
Q Consensus 465 l~~~~q~l~~~~~~~~e~~~~~q~eie~~e~~~~~Le 501 (814)
+.+|.+.+...+.+.++...+....+.+++.+..+.+
T Consensus 34 l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~ 70 (140)
T PRK07353 34 VEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASAR 70 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 440
>PF15325 MRI: Modulator of retrovirus infection
Probab=38.86 E-value=51 Score=30.85 Aligned_cols=18 Identities=39% Similarity=0.479 Sum_probs=15.5
Q ss_pred CCCCCCCCCcccCCCcee
Q 003511 606 RSGCSPCIGQLYSRSSCI 623 (814)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~ 623 (814)
.++.+|-+|..+|.|+|.
T Consensus 68 ~pglsps~~p~~s~s~cs 85 (106)
T PF15325_consen 68 APGLSPSQGPGGSDSACS 85 (106)
T ss_pred CCCCCCCCCCCCCCcccC
Confidence 468899999999999993
No 441
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=38.81 E-value=14 Score=41.62 Aligned_cols=15 Identities=47% Similarity=0.787 Sum_probs=12.9
Q ss_pred eEEEeeccCCCCcce
Q 003511 99 ATVFAYGSTGSGKTY 113 (814)
Q Consensus 99 ~tIfAYGqTGSGKTy 113 (814)
+-|+..|+||||||+
T Consensus 98 SNILLiGPTGsGKTl 112 (408)
T COG1219 98 SNILLIGPTGSGKTL 112 (408)
T ss_pred ccEEEECCCCCcHHH
Confidence 457889999999985
No 442
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=38.80 E-value=17 Score=37.79 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=21.8
Q ss_pred hhhHhhhccC---cceEEEeeccCCCCcceee
Q 003511 87 SSVISGVVQG---LNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 87 ~plV~~vl~G---yN~tIfAYGqTGSGKTyTM 115 (814)
-+-+|.++.| ....+.-+|++|||||..+
T Consensus 5 ~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 5 SKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred chhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 3456777775 3567789999999999654
No 443
>PRK14974 cell division protein FtsY; Provisional
Probab=38.34 E-value=29 Score=39.14 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=15.8
Q ss_pred ceEEEeeccCCCCcceee
Q 003511 98 NATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 98 N~tIfAYGqTGSGKTyTM 115 (814)
...|.-.|++|+|||.|+
T Consensus 140 ~~vi~~~G~~GvGKTTti 157 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTI 157 (336)
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 467888999999999987
No 444
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=38.24 E-value=23 Score=38.43 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=21.9
Q ss_pred CcHHHHHHHHhhhHhhhcc--CcceEEEeeccCCCCcceee
Q 003511 77 TNLDVYTACISSVISGVVQ--GLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 77 tQeeVy~~~v~plV~~vl~--GyN~tIfAYGqTGSGKTyTM 115 (814)
.|+++.+. +..++..... +....++-||++|+|||+..
T Consensus 8 G~~~~~~~-l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 8 GQEKVKEQ-LQLFIEAAKMRQEALDHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CHHHHHHH-HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 45555544 3333333221 22234677999999999755
No 445
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=38.08 E-value=21 Score=39.68 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=20.0
Q ss_pred hhccCcceEEEeeccCCCCcceeec
Q 003511 92 GVVQGLNATVFAYGSTGSGKTYTMV 116 (814)
Q Consensus 92 ~vl~GyN~tIfAYGqTGSGKTyTM~ 116 (814)
.--..-+.-++-||+.|||||.+|.
T Consensus 17 ~~~~~~~~r~vL~G~~GsGKS~~L~ 41 (309)
T PF10236_consen 17 ADKSSKNNRYVLTGERGSGKSVLLA 41 (309)
T ss_pred hcccCCceEEEEECCCCCCHHHHHH
Confidence 3345667789999999999998873
No 446
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=38.06 E-value=12 Score=42.95 Aligned_cols=40 Identities=25% Similarity=0.506 Sum_probs=28.5
Q ss_pred cceEEEeeccCCCCcceeeccCCCCCCchhhhHHHHHHHHhhcCCCCeEEEEEEEEEEec
Q 003511 97 LNATVFAYGSTGSGKTYTMVGTKSDPGLMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYN 156 (814)
Q Consensus 97 yN~tIfAYGqTGSGKTyTM~G~~~~~GIIpral~~LF~~i~~~~~~~~f~VsvSylEIYn 156 (814)
+-..|+-||.+||||||++ +.+|+..+. -.|.+..+|-|.
T Consensus 29 ~PS~~~iyG~sgTGKT~~~--------------r~~l~~~n~------~~vw~n~~ecft 68 (438)
T KOG2543|consen 29 IPSIVHIYGHSGTGKTYLV--------------RQLLRKLNL------ENVWLNCVECFT 68 (438)
T ss_pred cceeEEEeccCCCchhHHH--------------HHHHhhcCC------cceeeehHHhcc
Confidence 3345689999999999965 677776522 236777777775
No 447
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=37.97 E-value=26 Score=39.18 Aligned_cols=74 Identities=19% Similarity=0.334 Sum_probs=48.9
Q ss_pred eeeecCCCCCcHHHHHHHHhhh-HhhhccCcc---eEEEeeccCCCCcceeecc-----------CCC------CCCchh
Q 003511 68 FDRAFGPGCTNLDVYTACISSV-ISGVVQGLN---ATVFAYGSTGSGKTYTMVG-----------TKS------DPGLMV 126 (814)
Q Consensus 68 FD~VF~~~atQeeVy~~~v~pl-V~~vl~GyN---~tIfAYGqTGSGKTyTM~G-----------~~~------~~GIIp 126 (814)
.+.|-+-+..-+.+-+.++-|+ .-+++.|-- ..|+.||+.|+||+|.--. -.+ --|=-.
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESE 211 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESE 211 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHH
Confidence 4455555555556666666665 356666654 5799999999999985421 111 125556
Q ss_pred hhHHHHHHHHhhcCC
Q 003511 127 LSLHTIFDLIKKDKN 141 (814)
Q Consensus 127 ral~~LF~~i~~~~~ 141 (814)
+.+..||+...+.+.
T Consensus 212 kLVknLFemARe~kP 226 (439)
T KOG0739|consen 212 KLVKNLFEMARENKP 226 (439)
T ss_pred HHHHHHHHHHHhcCC
Confidence 889999998877664
No 448
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=37.93 E-value=19 Score=42.98 Aligned_cols=42 Identities=26% Similarity=0.391 Sum_probs=27.1
Q ss_pred ceeeeeeecCCCCCcHHHHHHHHhhhHhhhccCcceEEEeeccCCCCcce
Q 003511 64 KNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTY 113 (814)
Q Consensus 64 k~F~FD~VF~~~atQeeVy~~~v~plV~~vl~GyN~tIfAYGqTGSGKTy 113 (814)
+...|+.+++.+.. +..+...+..+....|+-||++|+|||+
T Consensus 60 rp~~f~~iiGqs~~--------i~~l~~al~~~~~~~vLi~Ge~GtGKt~ 101 (531)
T TIGR02902 60 RPKSFDEIIGQEEG--------IKALKAALCGPNPQHVIIYGPPGVGKTA 101 (531)
T ss_pred CcCCHHHeeCcHHH--------HHHHHHHHhCCCCceEEEECCCCCCHHH
Confidence 34567778775432 2222233455566778889999999986
No 449
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=37.76 E-value=12 Score=40.93 Aligned_cols=19 Identities=37% Similarity=0.684 Sum_probs=17.4
Q ss_pred cCcceEEEeeccCCCCcce
Q 003511 95 QGLNATVFAYGSTGSGKTY 113 (814)
Q Consensus 95 ~GyN~tIfAYGqTGSGKTy 113 (814)
.|++-+|+..|++|+|||.
T Consensus 1 kg~~fnImVvG~sG~GKTT 19 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTT 19 (281)
T ss_dssp HEEEEEEEEEECTTSSHHH
T ss_pred CCceEEEEEECCCCCCHHH
Confidence 4888999999999999986
No 450
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=37.72 E-value=21 Score=40.58 Aligned_cols=44 Identities=27% Similarity=0.366 Sum_probs=29.8
Q ss_pred ceeeeeeecCCCCCcHHHHHHHHhhhHhhhccCcceEEEeeccCCCCcceee
Q 003511 64 KNYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 64 k~F~FD~VF~~~atQeeVy~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM 115 (814)
..|.|+.|-+ |+++-......+|+. .-+.|+.+|.+|||||+.+
T Consensus 12 ~~~pf~~ivG----q~~~k~al~~~~~~p----~~~~vli~G~~GtGKs~~a 55 (350)
T CHL00081 12 PVFPFTAIVG----QEEMKLALILNVIDP----KIGGVMIMGDRGTGKSTTI 55 (350)
T ss_pred CCCCHHHHhC----hHHHHHHHHHhccCC----CCCeEEEEcCCCCCHHHHH
Confidence 3788988886 555544444444443 3345779999999999865
No 451
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=37.60 E-value=3e+02 Score=24.53 Aligned_cols=68 Identities=16% Similarity=0.145 Sum_probs=38.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhhHHHHHHHHHHhHhHHHHHH
Q 003511 477 RENDEAGINYQKEIEENESRRCELQKMIDEAVSSNGNKTYLRILSQYRILGMANIELQFEMAMRDQVIHNQR 548 (814)
Q Consensus 477 ~~~~e~~~~~q~eie~~e~~~~~Le~~l~~~i~~~~~~~~~~lL~k~~~l~~~~~elq~e~~~r~~~I~~~r 548 (814)
++.++.+..++++-=.+.-+.--|++.+..... .....++...-+|..+..+|+.++.-++..|.+..
T Consensus 3 rEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~----~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~ 70 (75)
T PF07989_consen 3 REQEEQIDKLKKENFNLKLRIYFLEERLQKLGP----ESIEELLKENIELKVEVESLKRELQEKKKLLKEAE 70 (75)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555566666667776664332 22335555555666677777777666666655443
No 452
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=37.58 E-value=13 Score=31.79 Aligned_cols=15 Identities=33% Similarity=0.589 Sum_probs=12.1
Q ss_pred EEeeccCCCCcceee
Q 003511 101 VFAYGSTGSGKTYTM 115 (814)
Q Consensus 101 IfAYGqTGSGKTyTM 115 (814)
.+-.|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999755
No 453
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=37.55 E-value=3.3e+02 Score=25.08 Aligned_cols=62 Identities=15% Similarity=0.177 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhhHHHHHHHHHHhHhHHHHHHHH
Q 003511 484 INYQKEIEENESRRCELQKMIDEAVSSNGNKTYLRILSQYRILGMANIELQFEMAMRDQVIHNQRAA 550 (814)
Q Consensus 484 ~~~q~eie~~e~~~~~Le~~l~~~i~~~~~~~~~~lL~k~~~l~~~~~elq~e~~~r~~~I~~~r~~ 550 (814)
.....++..++++...|+.++.++- +.+..+......+..++.-|...+..-..+|.+..+.
T Consensus 20 ~~k~~~~~~lE~k~~rl~~Ek~kad-----qkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~ 81 (96)
T PF08647_consen 20 DKKVKELTILEQKKLRLEAEKAKAD-----QKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKET 81 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3334444444444444444443332 2333333333343444444444444444444444443
No 454
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=37.54 E-value=36 Score=36.62 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=24.9
Q ss_pred CCCCCcHHHHHHHHhhhHhhhcc-C-cceEEEeeccCCCCcce
Q 003511 73 GPGCTNLDVYTACISSVISGVVQ-G-LNATVFAYGSTGSGKTY 113 (814)
Q Consensus 73 ~~~atQeeVy~~~v~plV~~vl~-G-yN~tIfAYGqTGSGKTy 113 (814)
++-..|+.+-.. .+.+++.+.. | .-..++-||+.|.|||.
T Consensus 24 ~efiGQ~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKTT 65 (233)
T PF05496_consen 24 DEFIGQEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKTT 65 (233)
T ss_dssp CCS-S-HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHHH
T ss_pred HHccCcHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchhH
Confidence 344468888754 5667776653 2 23457889999999984
No 455
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=37.48 E-value=27 Score=37.51 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=19.3
Q ss_pred HHHhhhHhhhccCcceEEEeeccCCCCcceee
Q 003511 84 ACISSVISGVVQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 84 ~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM 115 (814)
.+...++..+..|.+. +-+|++|+|||...
T Consensus 9 ~l~~~~l~~l~~g~~v--LL~G~~GtGKT~lA 38 (262)
T TIGR02640 9 RVTSRALRYLKSGYPV--HLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHHHHhcCCeE--EEEcCCCCCHHHHH
Confidence 3344445555566554 56899999999643
No 456
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.00 E-value=18 Score=42.12 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=17.6
Q ss_pred HhhhccCcceEEEeeccCCCCcceee
Q 003511 90 ISGVVQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 90 V~~vl~GyN~tIfAYGqTGSGKTyTM 115 (814)
|..+++|.++ ++..+||||||.+.
T Consensus 20 i~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 20 INAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 3456788874 56679999999753
No 457
>PRK14148 heat shock protein GrpE; Provisional
Probab=36.98 E-value=5.2e+02 Score=27.18 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=13.3
Q ss_pred hcccchHHHHHHHHhcCcee
Q 003511 560 RSGVDEKHLLDLAAKHGITI 579 (814)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~ 579 (814)
+.-+-.+++.++.+++||+.
T Consensus 122 Gv~mi~k~l~~vL~k~Gv~~ 141 (195)
T PRK14148 122 GIELTAKMLVDILKKNGVEE 141 (195)
T ss_pred HHHHHHHHHHHHHHHCCCEE
Confidence 33334667778888888864
No 458
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=36.82 E-value=5.7e+02 Score=27.60 Aligned_cols=13 Identities=31% Similarity=0.360 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 003511 424 LQNALFELEETNL 436 (814)
Q Consensus 424 lq~~l~elee~~~ 436 (814)
|+.++..+++...
T Consensus 10 le~rL~q~eee~~ 22 (246)
T PF00769_consen 10 LEERLRQMEEEMR 22 (246)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444333
No 459
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.65 E-value=2.7e+02 Score=32.28 Aligned_cols=18 Identities=11% Similarity=0.311 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 003511 492 ENESRRCELQKMIDEAVS 509 (814)
Q Consensus 492 ~~e~~~~~Le~~l~~~i~ 509 (814)
.+..++.+|+..+++.+.
T Consensus 330 ~i~~~l~ql~rql~~il~ 347 (497)
T KOG3838|consen 330 AIHKQLAQLERQLDKILG 347 (497)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 355666677777765554
No 460
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=36.64 E-value=5.5e+02 Score=27.30 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCcchhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 371 DNLQIEVCRLKKELADKDSQPSVKPAEKAADDELSWLNVLSLEISENAQERINLQNALFELEETN 435 (814)
Q Consensus 371 ~~L~~Ei~~Lk~eL~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~e~~~e~~~lq~~l~elee~~ 435 (814)
..|+.|++.|+.+-.....+....+.. ....+...+.|..+..+.|+.+....|...
T Consensus 31 ~~lE~EL~~lr~qq~~~~~~~~~~~~~--------~~~~L~~~LrEkEErILaLEad~~kWEqkY 87 (205)
T PF12240_consen 31 TRLERELESLRAQQRQGNSSGSSSPSN--------NASNLKELLREKEERILALEADMTKWEQKY 87 (205)
T ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCC--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777776544433332222221 123445566666666777777776666544
No 461
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=36.49 E-value=18 Score=44.23 Aligned_cols=17 Identities=41% Similarity=0.632 Sum_probs=14.5
Q ss_pred EEEeeccCCCCcceeec
Q 003511 100 TVFAYGSTGSGKTYTMV 116 (814)
Q Consensus 100 tIfAYGqTGSGKTyTM~ 116 (814)
.++..|++|||||+|+.
T Consensus 175 ~~lI~GpPGTGKT~t~~ 191 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLV 191 (637)
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 45689999999999884
No 462
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=36.40 E-value=15 Score=40.63 Aligned_cols=17 Identities=41% Similarity=0.616 Sum_probs=14.3
Q ss_pred eEEEeeccCCCCcceee
Q 003511 99 ATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 99 ~tIfAYGqTGSGKTyTM 115 (814)
..++-||++|+|||+..
T Consensus 52 ~~~ll~GppG~GKT~la 68 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLA 68 (328)
T ss_pred CcEEEECCCCccHHHHH
Confidence 35778999999999866
No 463
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=36.13 E-value=5.1e+02 Score=26.83 Aligned_cols=53 Identities=15% Similarity=0.225 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhhHHHHHHHHH
Q 003511 485 NYQKEIEENESRRCELQKMIDEAVSSNGNKTYLRILSQYRILGMANIELQFEMA 538 (814)
Q Consensus 485 ~~q~eie~~e~~~~~Le~~l~~~i~~~~~~~~~~lL~k~~~l~~~~~elq~e~~ 538 (814)
.+.++++...++++++...+..++.-++.. +.........|+.+|.+|..-+.
T Consensus 125 ~~~~~~~~~~~kI~EM~~vM~~ai~~de~~-~~~~qe~i~qL~~EN~~LRelL~ 177 (181)
T PF05769_consen 125 QLSKEVQSQAEKICEMAAVMRKAIELDEEN-SQEEQEIIAQLETENKGLRELLQ 177 (181)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcchhh-hHhHHHHHHHHHHHHHHHHHHHh
Confidence 456677777788888888888888655433 34555555666777777766543
No 464
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=35.95 E-value=9.6e+02 Score=29.93 Aligned_cols=50 Identities=40% Similarity=0.650 Sum_probs=33.9
Q ss_pred CCcceeeccCCCCCCchhhhHHHHHHHHhhcCCCCeEEEEEEEEEEecceeeecccc
Q 003511 109 SGKTYTMVGTKSDPGLMVLSLHTIFDLIKKDKNSDEFEVSCSYLEVYNEVIYDLLEK 165 (814)
Q Consensus 109 SGKTyTM~G~~~~~GIIpral~~LF~~i~~~~~~~~f~VsvSylEIYnE~I~DLL~~ 165 (814)
+|++|++.+.....|++.+....++.......... .++.|++.+.|++..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 111 (670)
T KOG0239|consen 62 AGLTYTMEGSNQPGGLLARLFKELIDLANSDKTSN-------VVEAYNERLRDLLSE 111 (670)
T ss_pred hhhhhhhhhhcCcchhHHHhhhhcccccccCCCch-------hHHHHHHHHhhhccc
Confidence 88999999988888888777776666433322211 456677777777643
No 465
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=35.85 E-value=5.6e+02 Score=27.20 Aligned_cols=139 Identities=18% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCcchhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 366 YQRMIDNLQIEVCRLKKELADKDSQPSVKPAEKAADDELSWLNVLSLEISENAQERINLQNALFELEETNLRIRAELQYL 445 (814)
Q Consensus 366 ~~~~I~~L~~Ei~~Lk~eL~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~e~~~e~~~lq~~l~elee~~~~~~~e~~~l 445 (814)
....|..+..|...+..+|.. .+.++.+.....+.++.-+..-......|.+.+.+............+.|
T Consensus 67 ~~~~i~~~~~erdq~~~dL~s---------~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aL 137 (207)
T PF05010_consen 67 SEAEIQKLLKERDQAYADLNS---------LEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQAL 137 (207)
T ss_pred HHHHHHHHHhhHHHHHHHHHH---------HHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH--HHcccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 003511 446 DDAIAKK--QAIGKDDAVVEALKSRRQIILDNIRENDEAGINYQKEIEENESRRCELQKMIDEAVSSNGN 513 (814)
Q Consensus 446 ~~~~~~~--~~~~k~~~~~e~l~~~~q~l~~~~~~~~e~~~~~q~eie~~e~~~~~Le~~l~~~i~~~~~ 513 (814)
..-...+ .+.+....+..........+...++..+-.+..+...++....+..+|-...+++|+..++
T Consensus 138 K~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k~~k 207 (207)
T PF05010_consen 138 KAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISKMGK 207 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 466
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=35.82 E-value=24 Score=42.98 Aligned_cols=43 Identities=23% Similarity=0.398 Sum_probs=29.2
Q ss_pred eeeeeeecCCCCCcHHHHHHHHhhhHhhhccCcceEEEeeccCCCCcceee
Q 003511 65 NYCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 65 ~F~FD~VF~~~atQeeVy~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyTM 115 (814)
..+||.+++. ...... ++..+..++...|+-||++|+|||+..
T Consensus 150 p~~~~~iiGq----s~~~~~----l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 150 PRAFSEIVGQ----ERAIKA----LLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred cCcHHhceeC----cHHHHH----HHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 4567777753 333332 344555677778899999999999754
No 467
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.81 E-value=8.4e+02 Score=29.24 Aligned_cols=16 Identities=19% Similarity=0.470 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 003511 463 EALKSRRQIILDNIRE 478 (814)
Q Consensus 463 e~l~~~~q~l~~~~~~ 478 (814)
|.|+++.+.|+..++.
T Consensus 414 E~Lr~Kldtll~~ln~ 429 (508)
T KOG3091|consen 414 EELRAKLDTLLAQLNA 429 (508)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4455555555554443
No 468
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=35.73 E-value=4.8e+02 Score=32.95 Aligned_cols=94 Identities=18% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003511 405 SWLNVLSLEISENAQERINLQNALFELEETNLRIRAELQYLDDAIAKKQAIGKDDAVVEALKSRRQIILDNIRENDEAGI 484 (814)
Q Consensus 405 ~~l~~l~~~~~e~~~e~~~lq~~l~elee~~~~~~~e~~~l~~~~~~~~~~~k~~~~~e~l~~~~q~l~~~~~~~~e~~~ 484 (814)
..++.+..+..+..+++.++++.+.++++...+++.+.+.++.. ..+..+.+..+.+.++++.+...+.+.
T Consensus 515 ~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~---------~~~~~~~a~~ea~~~~~~a~~~~~~~i 585 (771)
T TIGR01069 515 VLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKER---------ERNKKLELEKEAQEALKALKKEVESII 585 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003511 485 NYQKEIEENESRRCELQKMIDEA 507 (814)
Q Consensus 485 ~~q~eie~~e~~~~~Le~~l~~~ 507 (814)
..-++-...+....+..+.+...
T Consensus 586 ~~lk~~~~~~~~~~~~~~~~~~~ 608 (771)
T TIGR01069 586 RELKEKKIHKAKEIKSIEDLVKL 608 (771)
T ss_pred HHHHhccccHHHHHHHHHHHHHH
No 469
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=35.65 E-value=20 Score=40.57 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=13.8
Q ss_pred EEeeccCCCCcceeec
Q 003511 101 VFAYGSTGSGKTYTMV 116 (814)
Q Consensus 101 IfAYGqTGSGKTyTM~ 116 (814)
++..|+||||||+++.
T Consensus 2 ~lv~g~tGsGKt~~~v 17 (384)
T cd01126 2 VLVFAPTRSGKGVGFV 17 (384)
T ss_pred eeEecCCCCCCccEEE
Confidence 5788999999999873
No 470
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=35.55 E-value=14 Score=39.18 Aligned_cols=20 Identities=35% Similarity=0.512 Sum_probs=16.4
Q ss_pred ceEEEeeccCCCCcceeecc
Q 003511 98 NATVFAYGSTGSGKTYTMVG 117 (814)
Q Consensus 98 N~tIfAYGqTGSGKTyTM~G 117 (814)
...++-||..|+|||++.-+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~ 31 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKY 31 (220)
T ss_pred CcEEEEECCCCCCHHHHHHh
Confidence 35689999999999987644
No 471
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=35.51 E-value=6.8e+02 Score=28.10 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=15.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHh
Q 003511 361 THVSDYQRMIDNLQIEVCRLKKELA 385 (814)
Q Consensus 361 ~~~~~~~~~I~~L~~Ei~~Lk~eL~ 385 (814)
..+..|...+..|..|+..|..+|.
T Consensus 56 kTi~qy~~QLn~L~aENt~L~SkLe 80 (305)
T PF14915_consen 56 KTIFQYNGQLNVLKAENTMLNSKLE 80 (305)
T ss_pred HHHHHHhhhHHHHHHHHHHHhHHHH
Confidence 3445566666667777777766664
No 472
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.41 E-value=2e+02 Score=25.65 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhcccchHHHH
Q 003511 527 GMANIELQFEMAMRDQVIHNQRAAQRQLWNLLMRSGVDEKHLL 569 (814)
Q Consensus 527 ~~~~~elq~e~~~r~~~I~~~r~~~~~lW~~l~~~~~~~~~~~ 569 (814)
+.-..+|....+.-+++|++..+++-.+|-.+... +.++-
T Consensus 7 E~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~---q~qlr 46 (72)
T COG2900 7 EARIIELEIRLAFQEQTIEELNDALAEQQLVIDKL---QAQLR 46 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 44455677778888899999999999999888777 55544
No 473
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=35.28 E-value=24 Score=36.86 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=20.9
Q ss_pred HhhhHhhhccCc---ceEEEeeccCCCCccee
Q 003511 86 ISSVISGVVQGL---NATVFAYGSTGSGKTYT 114 (814)
Q Consensus 86 v~plV~~vl~Gy---N~tIfAYGqTGSGKTyT 114 (814)
+-+-+|.++.|- ..+++.+|.+|||||+-
T Consensus 10 Gi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l 41 (234)
T PRK06067 10 GNEELDRKLGGGIPFPSLILIEGDHGTGKSVL 41 (234)
T ss_pred CCHHHHHhhCCCCcCCcEEEEECCCCCChHHH
Confidence 345567777533 56778889999999864
No 474
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=35.20 E-value=1e+03 Score=30.05 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=11.4
Q ss_pred ChHHHHHHHHHHHHHhhcc
Q 003511 331 QYHHTLNTLKYADRAKKIK 349 (814)
Q Consensus 331 ~~eETlsTLrfA~Rak~Ik 349 (814)
.+-+.+..|+-..+|+.+.
T Consensus 532 ~lk~Kle~Lk~~~~~~~~s 550 (762)
T PLN03229 532 SLKYKLDMLNEFSRAKALS 550 (762)
T ss_pred HHHHHHHHHHHHHHhhhhc
Confidence 3555666666666666654
No 475
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=35.07 E-value=2.3e+02 Score=33.73 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 003511 368 RMIDNLQIEVCRLKKELAD 386 (814)
Q Consensus 368 ~~I~~L~~Ei~~Lk~eL~~ 386 (814)
..+..|+.++.+|+.+++.
T Consensus 71 ~~~~~l~~~l~~l~~~~~~ 89 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRD 89 (525)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4666667766666665543
No 476
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=34.98 E-value=1.1e+03 Score=30.24 Aligned_cols=305 Identities=16% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCcchhhhhhHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q 003511 366 YQRMIDNLQIEVCRLKKELADKDSQPSVKPAEKAADDELSWLNVLSLEISENAQ-----ERINLQNALFELEETNLRIRA 440 (814)
Q Consensus 366 ~~~~I~~L~~Ei~~Lk~eL~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~e~~~-----e~~~lq~~l~elee~~~~~~~ 440 (814)
.+..|++|..|...|.+.|.........-....-.++...+-..+.++..+..+ +...+...+.+-+........
T Consensus 668 ~~~q~eel~Ke~kElq~rL~~q~KkiDh~ERA~R~EeiPL~e~~~~~~~~~d~e~~e~~Ek~Ri~~~~ae~e~~vk~k~~ 747 (988)
T KOG2072|consen 668 KARQIEELEKERKELQSRLQYQEKKIDHLERAKRLEEIPLIEKAYDERQEEDRELYEAREKQRIEAAIAERESAVKDKKR 747 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH-HHHHcccchHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 003511 441 ELQYLDDAIA-KKQAIGKDDAVVEALKSRRQIILDN------IRENDEAGINYQKEIEENESRRCELQKMIDEAVSSNGN 513 (814)
Q Consensus 441 e~~~l~~~~~-~~~~~~k~~~~~e~l~~~~q~l~~~------~~~~~e~~~~~q~eie~~e~~~~~Le~~l~~~i~~~~~ 513 (814)
-.+.+.+... ++..........+....+.+..++. -+.........+..+.++++++..-+++...+...++.
T Consensus 748 l~rm~~d~~~f~e~vk~~rqs~~~e~~~~~ea~leaer~rl~erk~~R~eerk~~~~re~EEEr~Rr~EEe~~ae~~ee~ 827 (988)
T KOG2072|consen 748 LSRMYDDRDKFKEHVKGERQSEYEEKLKQFEARLEAERNRLAERKRARIEERKQAYYREIEEERARREEEEANAERQEEA 827 (988)
T ss_pred HHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCceecccccCCCCCCCCc
Q 003511 514 KTYLRILSQYRILGMANIELQFEMAMRDQVIHNQRAAQRQLWNLLMRSGVDEKHLLDLAAKHGITIEDWSMDSHVGLPER 593 (814)
Q Consensus 514 ~~~~~lL~k~~~l~~~~~elq~e~~~r~~~I~~~r~~~~~lW~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 593 (814)
++ ..-....+.+.++.+-+.+..-...+-+..|...+.. .+|..+.|...---...+- |.--|.-.+|-.
T Consensus 828 ~e--~akr~~~eRe~e~~~ak~ekqr~re~~ereRr~~eE~--r~~~~~pSr~~~~t~~~r~------~~a~~~~~s~s~ 897 (988)
T KOG2072|consen 828 AE--RAKRTEEEREIENRVAKKEKQRQRETEERERRINEER--RLMRSTPSRLPEETVGDRD------WRAGPDAISPSP 897 (988)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHhhccchhhhcchhcc--cCCCCccccccccccCchh------hhccccCCCCCC
Q ss_pred cCCCCCCCCCCC---CCCCCCCCCcccCCCceeEecccCCccCCCCCCCCCcccchhhhhccccceeccCCCCCccceec
Q 003511 594 KKSMDFSPGRYT---RSGCSPCIGQLYSRSSCIFQHHEDFSSRFSPAGLWDPARTVCREEHRRSYYFLSHDHSPSTYLKL 670 (814)
Q Consensus 594 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (814)
.-++.-.-.++. .-+.+| .+.-||| -.+.-=+++.-+.| ++++.--+-.---++---....+|| -
T Consensus 898 ~a~~~~~WrR~a~~t~~~s~r-~spr~~r-----~~~~R~~~rv~p~~--~~~~gp~ka~~ad~wr~~r~~~gpp----~ 965 (988)
T KOG2072|consen 898 RAPEEAEWRRGAGRTAGGSSR-RSPRFSR-----DDVDRNGDRVPPRG--DPSRGPSKATGADKWRNKREPSGPP----K 965 (988)
T ss_pred CCCcchHHhhccCccCCCCCC-CCCcccc-----ccccccCCCCCCCC--CCCCCccccccchhhhhccCCCCCC----c
Q ss_pred ccccccccCCCCcccccCCCCCccc
Q 003511 671 RNCSEQWIDSTPGSWFETPGKHPQD 695 (814)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (814)
+ |.|.+-|..-.|+.+--+|.+
T Consensus 966 ~---d~w~~prddrr~gp~r~r~~~ 987 (988)
T KOG2072|consen 966 R---DRWSGPRDDRRFGPRRLRDDQ 987 (988)
T ss_pred c---cCCCCCccccccCCCCCCCCC
No 477
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=34.98 E-value=8.1e+02 Score=28.83 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 003511 367 QRMIDNLQIEVCRLKKELA 385 (814)
Q Consensus 367 ~~~I~~L~~Ei~~Lk~eL~ 385 (814)
...+++|..+|++|...|.
T Consensus 172 ~ee~kqlEe~ieeL~qsl~ 190 (446)
T KOG4438|consen 172 EEEVKQLEENIEELNQSLL 190 (446)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456666666666655443
No 478
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=34.85 E-value=4.8e+02 Score=26.09 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 461 VVEALKSRRQIILDNIRENDEAGINYQKEIEENESRRCELQKMID 505 (814)
Q Consensus 461 ~~e~l~~~~q~l~~~~~~~~e~~~~~q~eie~~e~~~~~Le~~l~ 505 (814)
.++.|....+.+..+..+....+..+..+-+.+.......+..+.
T Consensus 53 eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~ 97 (140)
T PF10473_consen 53 EIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVS 97 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555544444444444444444444333333333333
No 479
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=34.82 E-value=3e+02 Score=34.25 Aligned_cols=16 Identities=13% Similarity=0.314 Sum_probs=9.5
Q ss_pred ccceeccCCCCCccce
Q 003511 653 RSYYFLSHDHSPSTYL 668 (814)
Q Consensus 653 ~~~~~~~~~~~~~~~~ 668 (814)
.-.|++.+.+|-|+||
T Consensus 695 ~i~~~v~~~~siP~FL 710 (722)
T PF05557_consen 695 LIEFWVEERNSIPAFL 710 (722)
T ss_dssp HHHHHTTTS--HHHHH
T ss_pred HHHHHHHcCCChhHHH
Confidence 3345567777899987
No 480
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=34.78 E-value=7.5e+02 Score=28.34 Aligned_cols=161 Identities=12% Similarity=0.019 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCcchhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 369 MIDNLQIEVCRLKKELADKDSQPSVKPAEKAADDELSWLNVLSLEISENAQERINLQNALFELEETNLRIRAELQYLDDA 448 (814)
Q Consensus 369 ~I~~L~~Ei~~Lk~eL~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~e~~~e~~~lq~~l~elee~~~~~~~e~~~l~~~ 448 (814)
+...|+.|.++|..+|.- .+...+..+.+...+ ....+-+...-+++.+---+.--...+...+.....-+-+
T Consensus 140 lt~~LEKEReqL~QQiEF------e~~e~kK~E~~k~Kl-~~qLeeEk~RHeqis~mLilEcKka~~KaaEegqKA~ei~ 212 (561)
T KOG1103|consen 140 LTAHLEKEREQLQQQIEF------EIEEKKKAEIAKDKL-EMQLEEEKKRHEQISLMLILECKKALLKAAEEGQKAEEIM 212 (561)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q ss_pred HHHHHHcccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhh
Q 003511 449 IAKKQAIGKDDAVVEALKSRRQIILDNIRENDEAGINYQKEIEENESRRCELQKMIDEAVSSNGNKTYLRILSQYRILGM 528 (814)
Q Consensus 449 ~~~~~~~~k~~~~~e~l~~~~q~l~~~~~~~~e~~~~~q~eie~~e~~~~~Le~~l~~~i~~~~~~~~~~lL~k~~~l~~ 528 (814)
+..+.+....+...+.+...++.-++.--+-+..+.++..+.+.++.++..++...+-+- .+++.+-.-++.+++
T Consensus 213 Lklekdksr~~k~eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lK-----eEmeSLkeiVkdlEA 287 (561)
T KOG1103|consen 213 LKLEKDKSRTKKGEEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLK-----EEMESLKEIVKDLEA 287 (561)
T ss_pred HhhccCccccCCChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhhh
Q ss_pred hHHHHHHHHHHhH
Q 003511 529 ANIELQFEMAMRD 541 (814)
Q Consensus 529 ~~~elq~e~~~r~ 541 (814)
...-+.....++.
T Consensus 288 ~hQh~~pNeqLk~ 300 (561)
T KOG1103|consen 288 DHQHLRPNEQLKG 300 (561)
T ss_pred hhhhcCccccccC
No 481
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=34.78 E-value=8.3e+02 Score=28.84 Aligned_cols=11 Identities=36% Similarity=0.392 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 003511 423 NLQNALFELEE 433 (814)
Q Consensus 423 ~lq~~l~elee 433 (814)
.|+.+...||+
T Consensus 254 qLvhR~h~LEE 264 (502)
T KOG0982|consen 254 QLVHRYHMLEE 264 (502)
T ss_pred HHHHHHHHHHH
Confidence 34433333433
No 482
>PRK00131 aroK shikimate kinase; Reviewed
Probab=34.76 E-value=19 Score=35.09 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=13.2
Q ss_pred EEEeeccCCCCccee
Q 003511 100 TVFAYGSTGSGKTYT 114 (814)
Q Consensus 100 tIfAYGqTGSGKTyT 114 (814)
.|+.+|.+|||||+.
T Consensus 6 ~i~l~G~~GsGKstl 20 (175)
T PRK00131 6 NIVLIGFMGAGKSTI 20 (175)
T ss_pred eEEEEcCCCCCHHHH
Confidence 688999999999864
No 483
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=34.74 E-value=5.6e+02 Score=29.26 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=0.0
Q ss_pred ccCCCCCcccccccccc
Q 003511 686 FETPGKHPQDFRSSCPE 702 (814)
Q Consensus 686 ~~~~~~~~~~~~~~~~~ 702 (814)
|++++.--.+++|+.|+
T Consensus 322 ~~~~~~~~~~~~~~~~~ 338 (342)
T PF06632_consen 322 FSAENMSLETLKNSSPE 338 (342)
T ss_dssp -----------------
T ss_pred ccCCCCcHHHhhcCChh
Confidence 56666656666666664
No 484
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=34.62 E-value=34 Score=35.88 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=21.1
Q ss_pred HHHHHHHhhhHhhhcc-CcceEEEeeccCCCCcceee
Q 003511 80 DVYTACISSVISGVVQ-GLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 80 eVy~~~v~plV~~vl~-GyN~tIfAYGqTGSGKTyTM 115 (814)
.+|..++.-+..-+-. +..-.|.-.|++|||||+.+
T Consensus 14 ~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 14 AVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 3444444433332222 44556667799999999754
No 485
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=34.57 E-value=1.1e+03 Score=30.17 Aligned_cols=168 Identities=11% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCC----------CCCCCcchhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 366 YQRMIDNLQIEVCRLKKELADKDS----------QPSVKPAEKAADDELSWLNVLSLEISENAQERINLQNALFELEETN 435 (814)
Q Consensus 366 ~~~~I~~L~~Ei~~Lk~eL~~~~~----------~~~~~~~~~~~~~e~~~l~~l~~~~~e~~~e~~~lq~~l~elee~~ 435 (814)
....+++|+.|+++|+..+..... ..-..+......+.....+....-..++..+...+-+..++.+...
T Consensus 1090 ~ehelenLrnEieklndkIkdnne~~QVglae~nslmTiekDmcaselfneheeeS~ifdaa~nKiakiHe~AfEieknl 1169 (1424)
T KOG4572|consen 1090 KEHELENLRNEIEKLNDKIKDNNEGDQVGLAEENSLMTIEKDMCASELFNEHEEESGIFDAAGNKIAKIHEIAFEIEKNL 1169 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHhccCCccchhHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Q 003511 436 LRIRAELQYLDDAIAKKQAIGKDDAVVEALKSRRQIILDNIRENDEAGINYQKEIEENESRRCELQKMIDEAVSSNGNKT 515 (814)
Q Consensus 436 ~~~~~e~~~l~~~~~~~~~~~k~~~~~e~l~~~~q~l~~~~~~~~e~~~~~q~eie~~e~~~~~Le~~l~~~i~~~~~~~ 515 (814)
..+-.+++.+- +.++...-...-+.+.+...+....+..+.+.++.......++.+.|....+-+....
T Consensus 1170 keQaielank~-----------dpeLraiead~deeitQkdee~eaiIa~ld~d~dh~~de~ekdreqLi~kLNcekdea 1238 (1424)
T KOG4572|consen 1170 KEQAIELANKG-----------DPELRAIEADIDEEITQKDEETEAIIAMLDIDIDHDRDEIEKDREQLIIKLNCEKDEA 1238 (1424)
T ss_pred HHHHHHHHhcC-----------CchHHHHHhhhhHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccHHHH
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhHhHHHHH
Q 003511 516 YLRILSQYRILGMANIELQFEMAMRDQVIHNQ 547 (814)
Q Consensus 516 ~~~lL~k~~~l~~~~~elq~e~~~r~~~I~~~ 547 (814)
+...+ +..+.+-.....++.-+...++++
T Consensus 1239 iq~al---kafe~e~ei~E~al~eKsk~Lenq 1267 (1424)
T KOG4572|consen 1239 IQGAL---KAFEDEPEIRECALKEKSKALENQ 1267 (1424)
T ss_pred HhhhH---HHhccCHHHHHHHHHHHHHHHHHH
No 486
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=34.55 E-value=37 Score=39.67 Aligned_cols=47 Identities=19% Similarity=0.111 Sum_probs=0.0
Q ss_pred eeecCCCCCcHHHHHHHHhhhHhhhcc--------CcceEEEeeccCCCCcceee
Q 003511 69 DRAFGPGCTNLDVYTACISSVISGVVQ--------GLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 69 D~VF~~~atQeeVy~~~v~plV~~vl~--------GyN~tIfAYGqTGSGKTyTM 115 (814)
..+-..-...+.+.+.+...++.-+-. +.-..|+-+|.+|+|||+|.
T Consensus 58 ~~~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTta 112 (437)
T PRK00771 58 EEPPKGLTPREHVIKIVYEELVKLLGEETEPLVLPLKPQTIMLVGLQGSGKTTTA 112 (437)
T ss_pred ccccccCCcHHHHHHHHHHHHHHHhCCCccccccCCCCeEEEEECCCCCcHHHHH
No 487
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=34.49 E-value=6.9e+02 Score=27.82 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 003511 416 ENAQERINLQNALFELEETNLRIRAELQYLDDAIAKKQAIGKD-DAVVEALKSRRQIILDNIRENDEAGINYQKEIEENE 494 (814)
Q Consensus 416 e~~~e~~~lq~~l~elee~~~~~~~e~~~l~~~~~~~~~~~k~-~~~~e~l~~~~q~l~~~~~~~~e~~~~~q~eie~~e 494 (814)
...++..+|+..+..|.+++.+....+..|+..+.++...... +.....|....+-+.+..+..+.....+..++.-.+
T Consensus 15 ~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke 94 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKE 94 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhH
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhhHHHHHHHH
Q 003511 495 SRRCELQKMIDEAVSSNGNKTYLRILSQYRILGMANIELQFEM 537 (814)
Q Consensus 495 ~~~~~Le~~l~~~i~~~~~~~~~~lL~k~~~l~~~~~elq~e~ 537 (814)
.+..-|+-.|...- +.+..+-...+.+..+..-.|...
T Consensus 95 ~qv~~lEgQl~s~K-----kqie~Leqelkr~KsELErsQ~~~ 132 (307)
T PF10481_consen 95 SQVNFLEGQLNSCK-----KQIEKLEQELKRCKSELERSQQAA 132 (307)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhh
No 488
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=34.44 E-value=4.3e+02 Score=30.04 Aligned_cols=84 Identities=19% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHh--------HHHHHHHH
Q 003511 416 ENAQERINLQNALFELEETNLRIRAELQYLDDAIAKKQAIGKDDAVVEALKSRRQIILDNIREN--------DEAGINYQ 487 (814)
Q Consensus 416 e~~~e~~~lq~~l~elee~~~~~~~e~~~l~~~~~~~~~~~k~~~~~e~l~~~~q~l~~~~~~~--------~e~~~~~q 487 (814)
|-.+|-.+++++..++++........++.+......... .++....+...+.+.+... .+.+.+++
T Consensus 1 e~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~s------sI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~ 74 (330)
T PF07851_consen 1 ECEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSS------SISHQKKRLKELKKSLKRCKKSLSAEERELIEKLE 74 (330)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003511 488 KEIEENESRRCELQKMID 505 (814)
Q Consensus 488 ~eie~~e~~~~~Le~~l~ 505 (814)
++|.+.+....++|..|+
T Consensus 75 ~~Ik~r~~~l~DmEa~LP 92 (330)
T PF07851_consen 75 EDIKERRCQLFDMEAFLP 92 (330)
T ss_pred HHHHHHHhhHHHHHhhCC
No 489
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=34.38 E-value=9.9e+02 Score=30.26 Aligned_cols=109 Identities=11% Similarity=0.073 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhhHHHHHHH-
Q 003511 458 DDAVVEALKSRRQIILDNIRENDEAGINYQKEIEENESRRCELQKMIDEAVSSNGNKTYLRILSQYRILGMANIELQFE- 536 (814)
Q Consensus 458 ~~~~~e~l~~~~q~l~~~~~~~~e~~~~~q~eie~~e~~~~~Le~~l~~~i~~~~~~~~~~lL~k~~~l~~~~~elq~e- 536 (814)
..++.+...+.......++++..+.+...+.++++...+..++.+++.+... .+-.+...++....++..+
T Consensus 495 p~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~--------~l~~~~~~l~~~~~~~~~~a 566 (771)
T TIGR01069 495 PHFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKK--------ELEQEMEELKERERNKKLEL 566 (771)
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHh
Q 003511 537 MAMRDQVIHNQRAAQRQLWNLLMRSGVDEKHLLDLAAK 574 (814)
Q Consensus 537 ~~~r~~~I~~~r~~~~~lW~~l~~~~~~~~~~~~~~~~ 574 (814)
..--.++|.+-|+..+.+-+.|.....++..+.++.++
T Consensus 567 ~~ea~~~~~~a~~~~~~~i~~lk~~~~~~~~~~~~~~~ 604 (771)
T TIGR01069 567 EKEAQEALKALKKEVESIIRELKEKKIHKAKEIKSIED 604 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
No 490
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=34.37 E-value=18 Score=35.98 Aligned_cols=13 Identities=54% Similarity=0.851 Sum_probs=0.0
Q ss_pred EEeeccCCCCcce
Q 003511 101 VFAYGSTGSGKTY 113 (814)
Q Consensus 101 IfAYGqTGSGKTy 113 (814)
|+.+|..|||||+
T Consensus 2 i~i~G~pGsGKst 14 (183)
T TIGR01359 2 VFVLGGPGSGKGT 14 (183)
T ss_pred EEEECCCCCCHHH
No 491
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=34.36 E-value=16 Score=42.47 Aligned_cols=16 Identities=50% Similarity=0.617 Sum_probs=0.0
Q ss_pred EEEeeccCCCCcceee
Q 003511 100 TVFAYGSTGSGKTYTM 115 (814)
Q Consensus 100 tIfAYGqTGSGKTyTM 115 (814)
.|+-.|+||+|||+|+
T Consensus 223 ~i~~vGptGvGKTTt~ 238 (424)
T PRK05703 223 VVALVGPTGVGKTTTL 238 (424)
T ss_pred EEEEECCCCCCHHHHH
No 492
>PRK05580 primosome assembly protein PriA; Validated
Probab=34.25 E-value=23 Score=43.64 Aligned_cols=40 Identities=20% Similarity=-0.012 Sum_probs=0.0
Q ss_pred eeeeeecCCCCCcHHHHHHHHhhhHhhhccCcceEEEeeccCCCCcc
Q 003511 66 YCFDRAFGPGCTNLDVYTACISSVISGVVQGLNATVFAYGSTGSGKT 112 (814)
Q Consensus 66 F~FD~VF~~~atQeeVy~~~v~plV~~vl~GyN~tIfAYGqTGSGKT 112 (814)
+.++.-+.....|.++++.+...+ ....++.+|+||||||
T Consensus 137 ~~~~~~~~Lt~~Q~~ai~~i~~~~-------~~~~~Ll~~~TGSGKT 176 (679)
T PRK05580 137 DPAFEPPTLNPEQAAAVEAIRAAA-------GFSPFLLDGVTGSGKT 176 (679)
T ss_pred ccccCCCCCCHHHHHHHHHHHhcc-------CCCcEEEECCCCChHH
No 493
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=34.08 E-value=18 Score=44.74 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=0.0
Q ss_pred eeeeeeecCCCCCcHHHHHHHHhh-----hHhhhccCcceEEEeeccCCCCcceee
Q 003511 65 NYCFDRAFGPGCTNLDVYTACISS-----VISGVVQGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 65 ~F~FD~VF~~~atQeeVy~~~v~p-----lV~~vl~GyN~tIfAYGqTGSGKTyTM 115 (814)
.++||.|-+.+..-+.+.+.+..| +...+--...-.|+-||++|||||+.+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHH
No 494
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=33.97 E-value=5.2e+02 Score=26.30 Aligned_cols=102 Identities=14% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhhHHHHHHHHHHh
Q 003511 461 VVEALKSRRQIILDNIRENDEAGINYQKEIEENESRRCELQKMIDEAVSSNGNKTYLRILSQYRILGMANIELQFEMAMR 540 (814)
Q Consensus 461 ~~e~l~~~~q~l~~~~~~~~e~~~~~q~eie~~e~~~~~Le~~l~~~i~~~~~~~~~~lL~k~~~l~~~~~elq~e~~~r 540 (814)
+...+.+|.+.+...+.+.++...+.+..+++++.+..+-+.+..+.+.. -....--.....+.....+....+.--
T Consensus 52 v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~---A~~~a~~~~e~~~~~a~~ea~~~~~~A 128 (184)
T PRK13455 52 IGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAA---AKDEAQAAAEQAKADLEASIARRLAAA 128 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHh
Q 003511 541 DQVIHNQRAAQRQLWNLLMRSGVDEKHLLDLAAK 574 (814)
Q Consensus 541 ~~~I~~~r~~~~~lW~~l~~~~~~~~~~~~~~~~ 574 (814)
..-|+..++ ..+..+ ++++.|+|.+
T Consensus 129 ~~~I~~ek~------~a~~~l---~~~i~~lA~~ 153 (184)
T PRK13455 129 EDQIASAEA------AAVKAV---RDRAVSVAVA 153 (184)
T ss_pred HHHHHHHHH------HHHHHH---HHHHHHHHHH
No 495
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=33.96 E-value=23 Score=36.70 Aligned_cols=23 Identities=35% Similarity=0.680 Sum_probs=0.0
Q ss_pred Hhhhc-cCc--ceEEEeeccCCCCcc
Q 003511 90 ISGVV-QGL--NATVFAYGSTGSGKT 112 (814)
Q Consensus 90 V~~vl-~Gy--N~tIfAYGqTGSGKT 112 (814)
+|.++ .|+ +.+++.+|++|||||
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT 33 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKT 33 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcH
No 496
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=33.95 E-value=14 Score=45.73 Aligned_cols=146 Identities=16% Similarity=0.177 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcchhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003511 362 HVSDYQRMIDNLQIEVCRLKKELADKDSQPSVKPAEKAADDELSWLNVLSLEISENAQERINLQNALFELEETNLRIRAE 441 (814)
Q Consensus 362 ~~~~~~~~I~~L~~Ei~~Lk~eL~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~e~~~e~~~lq~~l~elee~~~~~~~e 441 (814)
.+..+...|.+|+.++..|..+-........--..-+...+....++.--+.+.+..++...+++++.+|++.|..+...
T Consensus 268 ~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~ 347 (713)
T PF05622_consen 268 ELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLET 347 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003511 442 LQYLDDAIAKKQAIGKDDAVVEALKSRRQIILDNIRENDEAGINYQKEIEENESRRCELQKMIDEAVSS 510 (814)
Q Consensus 442 ~~~l~~~~~~~~~~~k~~~~~e~l~~~~q~l~~~~~~~~e~~~~~q~eie~~e~~~~~Le~~l~~~i~~ 510 (814)
...|++.+.+...... ..+.++.+...+-....+.......+..++..++++...|+.+...++..
T Consensus 348 ~~~LEeel~~~~~~~~---qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e 413 (713)
T PF05622_consen 348 KAMLEEELKKARALKS---QLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEE 413 (713)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=33.75 E-value=34 Score=42.24 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=0.0
Q ss_pred HHHHHHhhhHhhhccCcceEEEeeccCCCCccee
Q 003511 81 VYTACISSVISGVVQGLNATVFAYGSTGSGKTYT 114 (814)
Q Consensus 81 Vy~~~v~plV~~vl~GyN~tIfAYGqTGSGKTyT 114 (814)
||.-.-...-.=+-.|.|.||+.-|.+|||||.|
T Consensus 75 ifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~ 108 (677)
T cd01383 75 VYAIADTAYNEMMRDEVNQSIIISGESGAGKTET 108 (677)
T ss_pred HHHHHHHHHHHHHHcCCCceEEEecCCCCCcchH
No 498
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=33.72 E-value=3.9e+02 Score=24.75 Aligned_cols=102 Identities=14% Similarity=0.153 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHH
Q 003511 400 ADDELSWLNVLSLEISENAQERINLQNALFELEETNLRIRA--ELQYLDDAIAKKQAIGKDDAVVEALKSRRQIILDNIR 477 (814)
Q Consensus 400 ~~~e~~~l~~l~~~~~e~~~e~~~lq~~l~elee~~~~~~~--e~~~l~~~~~~~~~~~k~~~~~e~l~~~~q~l~~~~~ 477 (814)
.......++.++.++......+..+...+.|.+.....+.. .-...-..+..--.....++..+.|..+.+.+...+.
T Consensus 1 ~q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~ 80 (105)
T cd00632 1 VQEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIK 80 (105)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q 003511 478 ENDEAGINYQKEIEENESRRCELQ 501 (814)
Q Consensus 478 ~~~e~~~~~q~eie~~e~~~~~Le 501 (814)
.....+..+.+++.+++.+..+++
T Consensus 81 ~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 81 RLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
No 499
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=33.68 E-value=16 Score=40.05 Aligned_cols=15 Identities=47% Similarity=0.733 Sum_probs=0.0
Q ss_pred EEeeccCCCCcceee
Q 003511 101 VFAYGSTGSGKTYTM 115 (814)
Q Consensus 101 IfAYGqTGSGKTyTM 115 (814)
+.-.|++|||||+||
T Consensus 30 ~vliGpSGsGKTTtL 44 (309)
T COG1125 30 LVLIGPSGSGKTTTL 44 (309)
T ss_pred EEEECCCCCcHHHHH
No 500
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=33.67 E-value=19 Score=39.30 Aligned_cols=21 Identities=24% Similarity=0.559 Sum_probs=0.0
Q ss_pred cCcceEEEeeccCCCCcceee
Q 003511 95 QGLNATVFAYGSTGSGKTYTM 115 (814)
Q Consensus 95 ~GyN~tIfAYGqTGSGKTyTM 115 (814)
.|+...|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Done!