BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003512
(814 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CWB|A Chain A, Solution Structure Of The Ubiquitin-Associated Domain Of
Human Bmsc-Ubp And Its Complex With Ubiquitin
pdb|2DEN|A Chain A, Solution Structure Of The Ubiquitin-Associated Domain Of
Human Bmsc-Ubp And Its Complex With Ubiquitin
Length = 108
Score = 35.8 bits (81), Expect = 0.088, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 770 SEWDPILEELQEMGFHDEETNKRLLKKNNGSIKGVVMDLLTG 811
S+W P L++L++MG D+E + R L+ G I+ + + G
Sbjct: 64 SQWQPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAG 105
>pdb|2CP8|A Chain A, Solution Structure Of The Rsgi Ruh-046, A Uba Domain From
Human Next To Brca1 Gene 1 Protein (Kiaa0049 Protein)
R923h Variant
Length = 54
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 775 ILEELQEMGFHDEETNKRLLKKNNGSIKGVVMDLL 809
++ L EMGF D + N RLLKK+N +I VV +LL
Sbjct: 12 LMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELL 46
>pdb|1WR1|B Chain B, The Complex Sturcture Of Dsk2p Uba With Ubiquitin
Length = 58
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 772 WDPILEELQEMGFHDEETNKRLLKKNNGSIKGVVMDLLTGE 812
++ L +L +MGF D + N L+++ GS++G + LL G+
Sbjct: 17 YEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNGD 57
>pdb|2BWE|A Chain A, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
pdb|2BWE|B Chain B, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
pdb|2BWE|C Chain C, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
pdb|2BWE|D Chain D, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
pdb|2BWE|E Chain E, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
pdb|2BWE|F Chain F, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
pdb|2BWE|G Chain G, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
pdb|2BWE|H Chain H, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
pdb|2BWE|I Chain I, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
pdb|2BWE|J Chain J, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
pdb|2BWE|K Chain K, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
pdb|2BWE|L Chain L, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
pdb|2BWE|M Chain M, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
pdb|2BWE|N Chain N, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
pdb|2BWE|O Chain O, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
pdb|2BWE|P Chain P, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
pdb|2BWE|Q Chain Q, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
pdb|2BWE|R Chain R, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
Length = 50
Score = 32.7 bits (73), Expect = 0.92, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 776 LEELQEMGFHDEETNKRLLKKNNGSIKGVVMDLLTGE 812
L +L +MGF D + N L+++ GS++G + LL G+
Sbjct: 13 LRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNGD 49
>pdb|2FFI|A Chain A, Crystal Structure Of Putative 2-pyrone-4,6-dicarboxylic
Acid Hydrolase From Pseudomonas Putida, Northeast
Structural Genomics Target Ppr23.
pdb|2FFI|B Chain B, Crystal Structure Of Putative 2-pyrone-4,6-dicarboxylic
Acid Hydrolase From Pseudomonas Putida, Northeast
Structural Genomics Target Ppr23
Length = 288
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 729 VEQTLLRELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCGVSEWDPILEELQEMGFHDE 787
VEQ L E +G + V LN Q DL G ++W P+LE + E G+H E
Sbjct: 93 VEQATLAEXARLGVRGVRLNLX---------GQDXPDLTG-AQWRPLLERIGEQGWHVE 141
>pdb|2BWB|A Chain A, Crystal Structure Of The Uba Domain Of Dsk2 From S.
Cerevisiae
pdb|2BWB|B Chain B, Crystal Structure Of The Uba Domain Of Dsk2 From S.
Cerevisiae
pdb|2BWB|C Chain C, Crystal Structure Of The Uba Domain Of Dsk2 From S.
Cerevisiae
pdb|2BWB|D Chain D, Crystal Structure Of The Uba Domain Of Dsk2 From S.
Cerevisiae
pdb|2BWB|E Chain E, Crystal Structure Of The Uba Domain Of Dsk2 From S.
Cerevisiae
pdb|2BWB|F Chain F, Crystal Structure Of The Uba Domain Of Dsk2 From S.
Cerevisiae
pdb|2BWB|G Chain G, Crystal Structure Of The Uba Domain Of Dsk2 From S.
Cerevisiae
pdb|2BWB|H Chain H, Crystal Structure Of The Uba Domain Of Dsk2 From S.
Cerevisiae
pdb|2BWB|I Chain I, Crystal Structure Of The Uba Domain Of Dsk2 From S.
Cerevisiae
Length = 46
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 776 LEELQEMGFHDEETNKRLLKKNNGSIKGVVMDLLTG 811
L +L +MGF D + N L+++ GS++G + LL G
Sbjct: 11 LRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 46
>pdb|2DIP|A Chain A, Solution Structure Of The Zz Domain Of Zinc Finger Swim
Domain Containing Protein 2
Length = 98
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 15/69 (21%)
Query: 377 HKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRG 436
H G+ C+ C PI G +K +Y LC CF D H H FR
Sbjct: 29 HLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECF------------DSYCHLSHTFTFR- 75
Query: 437 LYDHRQNFW 445
+ R W
Sbjct: 76 --EKRNQKW 82
>pdb|1OPI|A Chain A, Solution Structure Of The Third Rna Recognition Motif
(Rrm) Of U2af65 In Complex With An N-Terminal Sf1
Peptide
pdb|2M0G|B Chain B, Structure, Phosphorylation And U2af65 Binding Of The
Nterminal Domain Of Splicing Factor 1 During 3 Splice
Site Recognition
Length = 104
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 532 SVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVDP 589
S+EI P DGV V G I V+FT+ + M +G KF RV V DP
Sbjct: 43 SIEIPRPVDGVEVPGCGKIFVEFTSV-----FDCQKAMQGLTGRKFANRVVVTKYCDP 95
>pdb|1O0P|A Chain A, Solution Structure Of The Third Rna Recognition Motif
(Rrm) Of U2af65 In Complex With An N-Terminal Sf1
Peptide
Length = 104
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 532 SVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVDP 589
S+EI P DGV V G I V+FT+ + M +G KF RV V DP
Sbjct: 43 SIEIPRPVDGVEVPGCGKIFVEFTSV-----FDCQKAMQGLTGRKFANRVVVTKYCDP 95
>pdb|2O70|A Chain A, Structure Of Ohcu Decarboxylase From Zebrafish
pdb|2O70|B Chain B, Structure Of Ohcu Decarboxylase From Zebrafish
pdb|2O70|C Chain C, Structure Of Ohcu Decarboxylase From Zebrafish
pdb|2O70|D Chain D, Structure Of Ohcu Decarboxylase From Zebrafish
pdb|2O70|E Chain E, Structure Of Ohcu Decarboxylase From Zebrafish
pdb|2O70|F Chain F, Structure Of Ohcu Decarboxylase From Zebrafish
pdb|2O73|A Chain A, Structure Of Ohcu Decarboxylase In Complex With Allantoin
pdb|2O73|B Chain B, Structure Of Ohcu Decarboxylase In Complex With Allantoin
pdb|2O73|C Chain C, Structure Of Ohcu Decarboxylase In Complex With Allantoin
pdb|2O73|D Chain D, Structure Of Ohcu Decarboxylase In Complex With Allantoin
pdb|2O73|E Chain E, Structure Of Ohcu Decarboxylase In Complex With Allantoin
pdb|2O73|F Chain F, Structure Of Ohcu Decarboxylase In Complex With Allantoin
pdb|2O74|A Chain A, Structure Of Ohcu Decarboxylase In Complex With Guanine
pdb|2O74|B Chain B, Structure Of Ohcu Decarboxylase In Complex With Guanine
pdb|2O74|C Chain C, Structure Of Ohcu Decarboxylase In Complex With Guanine
pdb|2O74|D Chain D, Structure Of Ohcu Decarboxylase In Complex With Guanine
pdb|2O74|E Chain E, Structure Of Ohcu Decarboxylase In Complex With Guanine
pdb|2O74|F Chain F, Structure Of Ohcu Decarboxylase In Complex With Guanine
Length = 174
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 93 FGKAYARSSGSSTPLRSPRIQHPLPDIDSKISEILKSVPEPLREAISKLSTDVASK 148
FG + S + S R L DI+++ISE + S+P+ +E I + D+A +
Sbjct: 18 FGNVVEKCPLISAAIWSYRPFKDLADIEARISEFIHSLPDSGKEGILRCHPDLAGR 73
>pdb|2FC7|A Chain A, Solution Structure Of The Zz Domain Of Zzz3 Protein
Length = 82
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 377 HKGVRCDGCGVHPITGPRFKSK---VKDDYDLCSICFAAMGSEADYIRIDRPVH--YRHP 431
H G +CD CG+ PI G R+ + + D C C + E D + D + YR
Sbjct: 19 HVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCL-HETDIHKEDHQLEPIYRSS 77
Query: 432 RPFRG 436
P G
Sbjct: 78 GPSSG 82
>pdb|2W3R|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3S|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W54|A Chain A, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|C Chain C, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|E Chain E, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|G Chain G, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W55|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
Length = 462
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 328 RTADLGGNLSTNCPFSGIPVANESAGSSRHPRRGHFKRGFNRDALMGMFHKGVRCDGCGV 387
+ A +GGN++ P P A + G+S RRG +R + + K R G V
Sbjct: 277 QVATIGGNIANGSPIGDGPPALIAMGASLTLRRGQERRRMPLEDFFLEYRKQDRRPGEFV 336
Query: 388 HPITGPR-------FKSKVKDDYDLCSIC 409
+T P+ +K + D D+ ++C
Sbjct: 337 ESVTLPKSAPGLRCYKLSKRFDQDISAVC 365
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,032,967
Number of Sequences: 62578
Number of extensions: 1034596
Number of successful extensions: 1595
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1584
Number of HSP's gapped (non-prelim): 18
length of query: 814
length of database: 14,973,337
effective HSP length: 107
effective length of query: 707
effective length of database: 8,277,491
effective search space: 5852186137
effective search space used: 5852186137
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)