BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003513
(814 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 95/201 (47%), Gaps = 22/201 (10%)
Query: 416 LTKAPADVRGWEMVRRLSLMKNSIENLPTVPTCPHLLT----LFLNRNPLRTITGGFFQS 471
LT P+++ ++L L N + +LP+ H LT L+LN N L+T+ G F+
Sbjct: 28 LTAIPSNIPA--DTKKLDLQSNKLSSLPS--KAFHRLTKLRLLYLNDNKLQTLPAGIFKE 83
Query: 472 MSCLTVLKMSDNIMLRQLPMGI-SKLVSLQLLDISNTSVTELPEDL-KALVNLKCLNLVW 529
+ L L ++DN L+ LP+G+ +LV+L L + + LP + +L L L+L +
Sbjct: 84 LKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142
Query: 530 AKELVVVPQQLLSNFSRLRVLRMFATGFLLSSWHENVAEELLGLKYLE--------VLEI 581
EL +P+ + + L+ LR++ L E ++L LK L+ V E
Sbjct: 143 -NELQSLPKGVFDKLTSLKELRLYNNQ--LKRVPEGAFDKLTELKTLKLDNNQLKRVPEG 199
Query: 582 SFRSFEAYQTFLSSQKLRSCT 602
+F S E + + CT
Sbjct: 200 AFDSLEKLKMLQLQENPWDCT 220
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Query: 432 LSLMKNSIENLPT--VPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQL 489
L L NS+++LP L L+L N L+++ G F ++ LT L +S N L+ L
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSL 91
Query: 490 PMGI-SKLVSLQLLDISNTSVTELPEDL-KALVNLKCLNLVWAKELVVVPQQLLSNFSRL 547
P G+ KL L+ L ++ + LP+ + L LK L L + +L VP + + L
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL-YQNQLKSVPDGVFDRLTSL 150
Query: 548 RVL 550
+ +
Sbjct: 151 QYI 153
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 17/153 (11%)
Query: 385 KMHDVVRDMALWITCEIEKEKEGFLVYAGSGLTKAPADV-RGWEMVRRLSLMKNSIENLP 443
K+HD I+ E +L+ G+ L P V ++ L L++N +++LP
Sbjct: 74 KLHD--------ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125
Query: 444 --TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGI-SKLVSLQ 500
+L L+L N L+++ G F ++ LT L + DN L+ LP G+ KL L+
Sbjct: 126 DGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDL-DNNQLQSLPEGVFDKLTQLK 184
Query: 501 LLDISNTSVTELPED----LKALVNLKCLNLVW 529
L +++ + +P+ L +L ++ LN W
Sbjct: 185 QLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPW 217
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 14/182 (7%)
Query: 429 VRRLSLMKNSIENLP--TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIML 486
+++L + N+I LP P L L L RN L ++ G F + LT L MS+N +
Sbjct: 101 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 160
Query: 487 RQLPMGISKLVSLQLLDISNTSVTELPEDLKALVNL----KCLNLVWAKELVVVPQQLLS 542
R SLQ L +S+ +T + DL + +L NL+ + + ++L +
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLSTLAIPIAVEELDA 218
Query: 543 NFSRLRVLR--MFATGFLLSSWHENVAEELLGLKYLEVLEI--SFRSFEA--YQTFLSSQ 596
+ + + V+R + +L H N+ + L Y ++E+ S+ E Y F+ Q
Sbjct: 219 SHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278
Query: 597 KL 598
+L
Sbjct: 279 RL 280
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 8/165 (4%)
Query: 429 VRRLSLMKNSIENLPT--VPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIML 486
R L L KN I+ L + PHL L LN N + + G F ++ L L + N L
Sbjct: 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RL 92
Query: 487 RQLPMGI-SKLVSLQLLDIS-NTSVTELPEDLKALVNLKCLNLVWAKELVVVPQQLLSNF 544
+ +P+G+ + L +L LDIS N V L + L NLK L V +LV + + S
Sbjct: 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE-VGDNDLVYISHRAFSGL 151
Query: 545 SRLRVLRMFATGFLLSSWHENVAEELLGLKYLEVLEISFRSFEAY 589
+ L L + L+S L GL L + ++ + Y
Sbjct: 152 NSLEQLTLEKCN--LTSIPTEALSHLHGLIVLRLRHLNINAIRDY 194
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 14/184 (7%)
Query: 427 EMVRRLSLMKNSIENLP--TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNI 484
+++L + N+I LP P L L L RN L ++ G F + LT L MS+N
Sbjct: 93 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 152
Query: 485 MLRQLPMGISKLVSLQLLDISNTSVTELPEDLKALVNL----KCLNLVWAKELVVVPQQL 540
+ R SLQ L +S+ +T + DL + +L NL+ + + ++L
Sbjct: 153 LERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLSTLAIPIAVEEL 210
Query: 541 LSNFSRLRVLR--MFATGFLLSSWHENVAEELLGLKYLEVLEI--SFRSFE--AYQTFLS 594
++ + + V+R + +L H N+ + L Y ++E+ S+ E Y F+
Sbjct: 211 DASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK 270
Query: 595 SQKL 598
Q+L
Sbjct: 271 MQRL 274
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 15/137 (10%)
Query: 162 EKAHDIFKTLSKKKFA---LLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDVCGG-MEA 217
E+A D + L +K L+LDD+W+ LK ++ TTR V M
Sbjct: 227 EEAKDRLRILMLRKHPRSLLILDDVWDSWVLK----AFDSQCQILLTTRDKSVTDSVMGP 282
Query: 218 RRMFKV-ACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIGRAMA 276
+ + V + L E E+ V + + LPE A ++ KEC+G PL + IG +
Sbjct: 283 KYVVPVESSLGKEKGLEILSLFVNMKKAD----LPEQAHSIIKECKGSPLVVSLIGALL- 337
Query: 277 YKKTPEEWRYAIEVLRR 293
+ P W Y ++ L+
Sbjct: 338 -RDFPNRWEYYLKQLQN 353
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 15/136 (11%)
Query: 162 EKAHDIFKTLSKKKFA---LLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDVCGG-MEA 217
E+A D + L +K L+LDD+W+ LK ++ TTR V M
Sbjct: 221 EEAKDRLRILMLRKHPRSLLILDDVWDSWVLK----AFDSQCQILLTTRDKSVTDSVMGP 276
Query: 218 RRMFKV-ACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIGRAMA 276
+ + V + L E E+ V + + LPE A ++ KEC+G PL + IG +
Sbjct: 277 KYVVPVESSLGKEKGLEILSLFVNMKKAD----LPEQAHSIIKECKGSPLVVSLIGALL- 331
Query: 277 YKKTPEEWRYAIEVLR 292
+ P W Y ++ L+
Sbjct: 332 -RDFPNRWEYYLKQLQ 346
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 9/149 (6%)
Query: 408 FLVYAGSGLTKAPADVRGWEMVRRLSLMKNSIENLPTVP---TCPHLLTLFLNRNPLRTI 464
+L + +G+ ++ G E + L ++++ + + +L+ L ++ R
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436
Query: 465 TGGFFQSMSCLTVLKMSDNIMLRQ-LPMGISKLVSLQLLDISNTSVTEL-PEDLKALVNL 522
G F +S L VLKM+ N LP ++L +L LD+S + +L P +L +L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496
Query: 523 KCLNLVWAKELVVVPQQLLSNFSRLRVLR 551
+ LN+ + +L VP + F RL L+
Sbjct: 497 QVLNMA-SNQLKSVPDGI---FDRLTSLQ 521
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 450 HLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIM--LRQLPMGISKLVSLQLLDISNT 507
HL TL L NP++++ G F +S L L + + L P+G L +L+ L++++
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHN 134
Query: 508 SVT--ELPEDLKALVNLKCLNLVWAK 531
+ +LPE L NL+ L+L K
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNK 160
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 449 PHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMG-ISKLVSLQLLDISNT 507
P L L L+R ++TI G +QS+S L+ L ++ N ++ L +G S L SLQ L T
Sbjct: 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVET 110
Query: 508 SVTEL 512
++ L
Sbjct: 111 NLASL 115
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 454 LFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGI-SKLVSLQLLDISNTSVTEL 512
L+L N L + G F S++ LTVL + N L LP + +LV L+ L + +TEL
Sbjct: 69 LYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCNKLTEL 127
Query: 513 PEDLKALVNLKCLNLVWAKELVVVPQQLLSNFSRLRVLRMFA 554
P ++ L +L L L +L +P S L +F
Sbjct: 128 PRGIERLTHLTHLALD-QNQLKSIPHGAFDRLSSLTHAYLFG 168
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 415 GLTKAPADVRGWEMVRRLSLMKNSIENLP--TVPTCPHLLTLFLNRNPLRTITGGFFQSM 472
GLT P + RL L N +++LP L L L++N ++++ G F +
Sbjct: 18 GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL 75
Query: 473 SCLTVLKMSDNIMLRQLPMGI-SKLVSLQLLDISNTSVTELPEDL 516
+ LT+L + +N L+ LP G+ KL L+ L + + +P+ +
Sbjct: 76 TKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGI 119
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 96/213 (45%), Gaps = 16/213 (7%)
Query: 431 RLSLMKNSIENLPTVPT--CPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQ 488
R + K S +L ++P+ + +L L+ N + I+ Q L L ++ N +
Sbjct: 32 RNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI 91
Query: 489 LPMGISKLVSLQLLDISNTSVTELPED-LKALVNLKCLNLVWAKELVVVPQQLLSNFSRL 547
S L SL+ LD+S ++ L K L +L LNL+ + L S+ ++L
Sbjct: 92 EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151
Query: 548 RVLRMFATGFLLSSWHENVAEELLGLKYLEVLEISFRSFEAYQ-------TFLSSQKLRS 600
++LR+ + ++ + ++ GL +LE LEI ++Y+ +S L
Sbjct: 152 QILRVGN----MDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207
Query: 601 CTHALLLHRF-DREESIDVADLADLEQLNTLDF 632
H LLL F D S++ +L D + L+T F
Sbjct: 208 KQHILLLEIFVDVTSSVECLELRDTD-LDTFHF 239
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 88/193 (45%), Gaps = 11/193 (5%)
Query: 408 FLVYAGSGLTKAPADVRGWEMVRRLSLMKNSIENLPTVP---TCPHLLTLFLNRNPLRTI 464
+L + +G+ ++ G E + L ++++ + + +L+ L ++ R
Sbjct: 401 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 460
Query: 465 TGGFFQSMSCLTVLKMSDNIMLRQ-LPMGISKLVSLQLLDISNTSVTEL-PEDLKALVNL 522
G F +S L VLKM+ N LP ++L +L LD+S + +L P +L +L
Sbjct: 461 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 520
Query: 523 KCLNLVWAK--ELVVVPQQLLSNFSRLRVLRMFATGFLLSSWHENVAEELLGLKYLEVLE 580
+ LN+ L P + L++ L+VL ++ +++S + + L +L + +
Sbjct: 521 QVLNMSHNNFFSLDTFPYKCLNS---LQVLD-YSLNHIMTSKKQELQHFPSSLAFLNLTQ 576
Query: 581 ISFRSFEAYQTFL 593
F +Q+FL
Sbjct: 577 NDFACTCEHQSFL 589
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 450 HLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIM--LRQLPMGISKLVSLQLLDISNT 507
HL TL L NP++++ G F +S L L + + L P+G L +L+ L++++
Sbjct: 101 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHN 158
Query: 508 SVT--ELPEDLKALVNLKCLNLVWAK 531
+ +LPE L NL+ L+L K
Sbjct: 159 LIQSFKLPEYFSNLTNLEHLDLSSNK 184
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 87/211 (41%), Gaps = 17/211 (8%)
Query: 483 NIMLRQLPMGISKLVSLQLLDISNTSVTELPEDLKALVNLKCLNLVWAKELVVVPQQLLS 542
++ L Q P +L LQ I + ELP+ + L+ L L L +P + S
Sbjct: 90 SVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLA-RNPLRALPASIAS 148
Query: 543 NFSRLRVLRMFA-------TGFLLSSWHENVAEELLGLKYLEVLEISFRSFEAYQTFLS- 594
+RLR L + A L S+ + L+ L+ L + RS A L
Sbjct: 149 -LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQN 207
Query: 595 --SQKLRSCTHALL---LHRFDREESIDVADLADLEQLNTLDFYGCGCIKGLKI-DCNDM 648
S K+R+ + L +H + E +D+ L + F G +K L + DC+++
Sbjct: 208 LKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCSNL 266
Query: 649 VQKSRQPYVFRSLEKVTVRFCRNLRHLTFLV 679
+ + LEK+ +R C NL L L+
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 451 LLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGISK---------LVSLQL 501
L TL L RNPLR + S++ L L + L +LP ++ LV+LQ
Sbjct: 129 LETLTLARNPLRALPASIA-SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 502 LDISNTSVTELPEDLKALVNLKCLNL 527
L + T + LP + L NLK L +
Sbjct: 188 LRLEWTGIRSLPASIANLQNLKSLKI 213
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 88/193 (45%), Gaps = 11/193 (5%)
Query: 408 FLVYAGSGLTKAPADVRGWEMVRRLSLMKNSIENLPTVP---TCPHLLTLFLNRNPLRTI 464
+L + +G+ ++ G E + L ++++ + + +L+ L ++ R
Sbjct: 82 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141
Query: 465 TGGFFQSMSCLTVLKMSDNIMLRQ-LPMGISKLVSLQLLDISNTSVTEL-PEDLKALVNL 522
G F +S L VLKM+ N LP ++L +L LD+S + +L P +L +L
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201
Query: 523 KCLNLVWAK--ELVVVPQQLLSNFSRLRVLRMFATGFLLSSWHENVAEELLGLKYLEVLE 580
+ LN+ L P + L++ L+VL ++ +++S + + L +L + +
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNS---LQVLD-YSLNHIMTSKKQELQHFPSSLAFLNLTQ 257
Query: 581 ISFRSFEAYQTFL 593
F +Q+FL
Sbjct: 258 NDFACTCEHQSFL 270
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 97/241 (40%), Gaps = 49/241 (20%)
Query: 403 KEKEGFLVYAGSGLTKAPADVRGWEMVRRLSLMKNSIENLPT--VPTCPHLLTLFLNRNP 460
K G L SGLT+A V+ L L N I + + C +L L L N
Sbjct: 11 KGSSGSLNSIPSGLTEA---------VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 61
Query: 461 LRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGISKLVSLQLLDISNTSVTELPED-LKAL 519
+ TI F S+ SL+ LD+S ++ L K L
Sbjct: 62 INTIEEDSFSSLG------------------------SLEHLDLSYNYLSNLSSSWFKPL 97
Query: 520 VNLKCLNLVWAKELVVVPQQLLSNFSRLRVLRMFATGFLLSSWHENVAEELLGLKYLEVL 579
+L LNL+ + L S+ ++L++LR+ + ++ + ++ GL +LE L
Sbjct: 98 SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN----MDTFTKIQRKDFAGLTFLEEL 153
Query: 580 EISFRSFEAYQ-------TFLSSQKLRSCTHALLLHRF-DREESIDVADLADLEQLNTLD 631
EI ++Y+ +S L H LLL F D S++ +L D + L+T
Sbjct: 154 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD-LDTFH 212
Query: 632 F 632
F
Sbjct: 213 F 213
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 429 VRRLSLMKNSIENLPTVPTCPHLLTLFLNRNPLRTITGGFFQSMSCL 475
++ L + +N + LP P LL L ++RN L+++ G F ++ L
Sbjct: 453 LKELYISRNKLMTLPDASLLPMLLVLKISRNQLKSVPDGIFDRLTSL 499
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 88/193 (45%), Gaps = 11/193 (5%)
Query: 408 FLVYAGSGLTKAPADVRGWEMVRRLSLMKNSIENLPTVP---TCPHLLTLFLNRNPLRTI 464
+L + +G+ ++ G E + L ++++ + + +L+ L ++ R
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436
Query: 465 TGGFFQSMSCLTVLKMSDNIMLRQ-LPMGISKLVSLQLLDISNTSVTEL-PEDLKALVNL 522
G F +S L VLKM+ N LP ++L +L LD+S + +L P +L +L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496
Query: 523 KCLNLVWAK--ELVVVPQQLLSNFSRLRVLRMFATGFLLSSWHENVAEELLGLKYLEVLE 580
+ LN+ L P + L++ L+VL ++ +++S + + L +L + +
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNS---LQVLD-YSLNHIMTSKKQELQHFPSSLAFLNLTQ 552
Query: 581 ISFRSFEAYQTFL 593
F +Q+FL
Sbjct: 553 NDFACTCEHQSFL 565
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 450 HLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIM--LRQLPMGISKLVSLQLLDISNT 507
HL TL L NP++++ G F +S L L + + L P+G L +L+ L++++
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHN 134
Query: 508 SVT--ELPEDLKALVNLKCLNLVWAK 531
+ +LPE L NL+ L+L K
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNK 160
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 15/137 (10%)
Query: 162 EKAHDIFKTLSKKKFA---LLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDVCGG-MEA 217
E+A D + L +K L+LDD+W+ LK ++ TTR V M
Sbjct: 221 EEAKDRLRVLMLRKHPRSLLILDDVWDPWVLK----AFDNQCQILLTTRDKSVTDSVMGP 276
Query: 218 RRMFKV-ACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIGRAMA 276
+ + V + L E E+ V + LP A ++ KEC+G PL + IG +
Sbjct: 277 KHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALL- 331
Query: 277 YKKTPEEWRYAIEVLRR 293
+ P W Y + L+
Sbjct: 332 -RDFPNRWAYYLRQLQN 347
>pdb|1PII|A Chain A, Three-Dimensional Structure Of The Bifunctional Enzyme
Phosphoribosylanthranilate Isomerase:
Indoleglycerolphosphate Synthase From Escherichia Coli
Refined At 2.0 Angstroms Resolution
Length = 452
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 29/140 (20%)
Query: 459 NPLRTITGGFFQSMSCLTVLKMSDNIMLRQLP-------MGISKLVS------------L 499
+P + ++Q+ +CL +L + D+ RQL MG+ VS
Sbjct: 119 DPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIALGA 178
Query: 500 QLLDISNTSVTELPEDLKALVNLKCLNLVWAKELVVVPQQLLSNFSRLRVLRMFATGFLL 559
+++ I+N + +L DL + L + V+ + ++ ++++R L FA GFL+
Sbjct: 179 KVVGINNRDLRDLSIDLN---RTRELAPKLGHNVTVISESGINTYAQVRELSHFANGFLI 235
Query: 560 SS-------WHENVAEELLG 572
S H V LLG
Sbjct: 236 GSALMAHDDLHAAVRRVLLG 255
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 432 LSLMKNSIENLP--TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQL 489
L L N + +LP L L+L N L+++ G F ++ L L+++ N L+ +
Sbjct: 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSI 146
Query: 490 PMG-ISKLVSLQLLDISNTSVTELPE 514
P G KL +LQ L +S + +P
Sbjct: 147 PAGAFDKLTNLQTLSLSTNQLQSVPH 172
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 432 LSLMKNSIENLP--TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQL 489
L L N + +LP L L+L N L+++ G F ++ L L+++ N L+ +
Sbjct: 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSI 146
Query: 490 PMG-ISKLVSLQLLDISNTSVTELPE 514
P G KL +LQ L +S + +P
Sbjct: 147 PAGAFDKLTNLQTLSLSTNQLQSVPH 172
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 450 HLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMG-ISKLVSLQLLDISNTS 508
HL L L+RN +RTI G F ++ L L++ DN L +P G L L+ L + N
Sbjct: 89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNP 147
Query: 509 VTELPE-DLKALVNLKCLNLVWAKELVVVPQQLLSNFSRLRVLRM 552
+ +P + +L+ L+L K L + + S LR L +
Sbjct: 148 IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL 192
>pdb|1JCM|P Chain P, Trpc Stability Mutant Containing An Engineered Disulphide
Bridge And In Complex With A Cdrp-Related Substrate
Length = 259
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 29/140 (20%)
Query: 459 NPLRTITGGFFQSMSCLTVLKMSDNIMLRQLP-------MGISKLVS------------L 499
+P + ++Q+ +CL +L + D+ RQL MG+ VS
Sbjct: 119 DPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIALGA 178
Query: 500 QLLDISNTSVTELPEDLKALVNLKCLNLVWAKELVVVPQQLLSNFSRLRVLRMFATGFLL 559
+++ I+N + +L DL + L + V+ + ++ ++++R L FA GFL+
Sbjct: 179 KVVGINNRDLCDLSIDLN---RTRELAPKLGHNVTVISESGINTYAQVRELSHFANGFLI 235
Query: 560 SS-------WHENVAEELLG 572
S H V LLG
Sbjct: 236 GSALMAHDDLHAAVRRVLLG 255
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 11/136 (8%)
Query: 450 HLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGISK-LVSLQLLDISNTS 508
HL TL L+R L+ + G F+ ++ L L + DN L+ LP + L +L L +
Sbjct: 105 HLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-NLQALPDNTFRDLGNLTHLFLHGNR 163
Query: 509 VTELPEDLKALVNLKCLN--LVWAKELVVVPQQLLSNFSRLRVLRMFATGFLLSSWHENV 566
+ +PE A L L+ L+ + V + RL L +FA +
Sbjct: 164 IPSVPE--HAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLP----- 216
Query: 567 AEELLGLKYLEVLEIS 582
AE L+ L+ L+ L ++
Sbjct: 217 AEVLVPLRSLQYLRLN 232
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 450 HLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIM--LRQLPMGISKLVSLQLLDISNT 507
HL TL L NP++++ G F +S L L + + L P+G L +L+ L++++
Sbjct: 78 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHN 135
Query: 508 SVT--ELPEDLKALVNLKCLNLVWAK 531
+ +LPE L NL+ L+L K
Sbjct: 136 LIQSFKLPEYFSNLTNLEHLDLSSNK 161
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 449 PHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMG-ISKLVSLQLLDISNT 507
P L L L+R ++TI G +QS+S L+ L ++ N ++ L +G S L SLQ L T
Sbjct: 53 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVET 111
Query: 508 SVTELPEDLKALVNLKCLNLVWAKELVVVPQQLLSNF 544
+L +L N +L KEL V L+ +F
Sbjct: 112 -------NLASLENFPIGHLKTLKELNVA-HNLIQSF 140
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 450 HLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIM--LRQLPMGISKLVSLQLLDISNT 507
HL TL L NP++++ G F +S L L + + L P+G L +L+ L++++
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHN 134
Query: 508 SVT--ELPEDLKALVNLKCLNLVWAK 531
+ +LPE L NL+ L+L K
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNK 160
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 449 PHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMG-ISKLVSLQLLDISNT 507
P L L L+R ++TI G +QS+S L+ L ++ N ++ L +G S L SLQ L T
Sbjct: 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVET 110
Query: 508 SVTEL 512
++ L
Sbjct: 111 NLASL 115
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 450 HLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIM--LRQLPMGISKLVSLQLLDISNT 507
HL TL L NP++++ G F +S L L + + L P+G L +L+ L++++
Sbjct: 79 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHN 136
Query: 508 SVT--ELPEDLKALVNLKCLNL 527
+ +LPE L NL+ L+L
Sbjct: 137 LIQSFKLPEYFSNLTNLEHLDL 158
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 449 PHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMG-ISKLVSLQLLDISNT 507
P L L L+R ++TI G +QS+S L+ L ++ N ++ L +G S L SLQ L T
Sbjct: 54 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVET 112
Query: 508 SVTEL 512
++ L
Sbjct: 113 NLASL 117
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 450 HLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIM--LRQLPMGISKLVSLQLLDISNT 507
HL TL L NP++++ G F +S L L + + L P+G L +L+ L++++
Sbjct: 78 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHN 135
Query: 508 SVT--ELPEDLKALVNLKCLNL 527
+ +LPE L NL+ L+L
Sbjct: 136 LIQSFKLPEYFSNLTNLEHLDL 157
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 449 PHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMG-ISKLVSLQLLDISNT 507
P L L L+R ++TI G +QS+S L+ L ++ N ++ L +G S L SLQ L T
Sbjct: 53 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVET 111
Query: 508 SVTEL 512
++ L
Sbjct: 112 NLASL 116
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Query: 451 LLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGISK-LVSLQLLDISNTSV 509
L TL L+R L+ + G F+ ++ L L + DN L+ LP + L +L L + +
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRI 165
Query: 510 TELPEDLKALVNLKCLN--LVWAKELVVVPQQLLSNFSRLRVLRMFATGFLLSSWHENVA 567
+ +PE +A L L+ L+ + V + RL L +FA LS+
Sbjct: 166 SSVPE--RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN--LSALPTEAL 221
Query: 568 EELLGLKYLEV 578
L L+YL +
Sbjct: 222 APLRALQYLRL 232
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Query: 451 LLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGISK-LVSLQLLDISNTSV 509
L TL L+R L+ + G F+ ++ L L + DN L+ LP + L +L L + +
Sbjct: 106 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRI 164
Query: 510 TELPEDLKALVNLKCLN--LVWAKELVVVPQQLLSNFSRLRVLRMFATGFLLSSWHENVA 567
+ +PE +A L L+ L+ + V + RL L +FA LS+
Sbjct: 165 SSVPE--RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN--LSALPTEAL 220
Query: 568 EELLGLKYLEV 578
L L+YL +
Sbjct: 221 APLRALQYLRL 231
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 86/198 (43%), Gaps = 32/198 (16%)
Query: 413 GSGLTKAPADVRGWEMVRRLSLMKNSIENLPTVPTCPHLLTLFLNRNPLRTITGGFFQSM 472
G+ LT P G ++ LS+ N + +LP +P+ L L+ N L ++
Sbjct: 130 GNQLTSLPVLPPG---LQELSVSDNQLASLPALPS--ELCKLWAYNNQLTSLP----MLP 180
Query: 473 SCLTVLKMSDNIMLRQLPMGISKLVSLQLLDISNTSVTELPEDLKALVNLKCLNLVWAKE 532
S L L +SDN L LP S+L L + TS+ LP LK L+ V
Sbjct: 181 SGLQELSVSDN-QLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELI-------VSGNR 232
Query: 533 LVVVP------QQLLSNFSRLRVLRMFATGFLLSSWHEN----VAEELLGLKY-----LE 577
L +P ++L+ + +RL L M +G L S + N + E L+ L LE
Sbjct: 233 LTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLE 292
Query: 578 VLEISFRSFEAYQTFLSS 595
+S R+ +A + S+
Sbjct: 293 GNPLSERTLQALREITSA 310
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.1 bits (74), Expect = 0.60, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 437 NSIENLPTVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGISKL 496
N I ++ + P L +L+L N + IT ++ L L + DN + +P+ + L
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPL--AGL 195
Query: 497 VSLQLLDISNTSVTELPEDLKALVNLKCLNLV 528
LQ L +S ++ DL+AL LK L+++
Sbjct: 196 TKLQNLYLSKNHIS----DLRALAGLKNLDVL 223
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.1 bits (74), Expect = 0.60, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 437 NSIENLPTVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGISKL 496
N I ++ + P L +L+L N + IT ++ L L + DN + +P+ + L
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPL--AGL 195
Query: 497 VSLQLLDISNTSVTELPEDLKALVNLKCLNLV 528
LQ L +S ++ DL+AL LK L+++
Sbjct: 196 TKLQNLYLSKNHIS----DLRALAGLKNLDVL 223
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.1 bits (74), Expect = 0.60, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 437 NSIENLPTVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGISKL 496
N I ++ + P L +L+L N + IT ++ L L + DN + +P+ + L
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPL--AGL 195
Query: 497 VSLQLLDISNTSVTELPEDLKALVNLKCLNLV 528
LQ L +S ++ DL+AL LK L+++
Sbjct: 196 TKLQNLYLSKNHIS----DLRALAGLKNLDVL 223
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 33.1 bits (74), Expect = 0.70, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 437 NSIENLPTVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGISKL 496
N I ++ + P L +L+L N + IT ++ L L + DN + +P+ + L
Sbjct: 117 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPL--AGL 172
Query: 497 VSLQLLDISNTSVTELPEDLKALVNLKCLNLV 528
LQ L +S ++ DL+AL LK L+++
Sbjct: 173 TKLQNLYLSKNHIS----DLRALAGLKNLDVL 200
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 437 NSIENLPTVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGISKL 496
N I ++ + P L +L+L N + IT ++ L L + DN + R +P+ ++L
Sbjct: 120 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIRRIVPL--ARL 175
Query: 497 VSLQLLDISNTSVTELPEDLKALVNLKCLNLVWAKELVVVPQQLLSNF 544
LQ L +S +++L L+ L NL L L +++E + P SN
Sbjct: 176 TKLQNLYLSKNHISDL-RALRGLKNLDVLEL-FSQEALNKPINHQSNL 221
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 437 NSIENLPTVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGISKL 496
N I ++ + P L +L+L N + IT ++ L L + DN + +P+ + L
Sbjct: 119 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPL--AGL 174
Query: 497 VSLQLLDISNTSVTELPEDLKALVNLKCLNLV 528
LQ L +S ++ DL+AL LK L+++
Sbjct: 175 TKLQNLYLSKNHIS----DLRALAGLKNLDVL 202
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 449 PHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNI---MLRQLPMGISKLVSLQLLDIS 505
PHL+ L L RN L I F+ S + L++ +N + ++ +G+ +L +L L D
Sbjct: 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ 113
Query: 506 NTSVTELPEDLKALVNLKCLNLV 528
+ V +P + L +L LNL
Sbjct: 114 ISCV--MPGSFEHLNSLTSLNLA 134
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 15/137 (10%)
Query: 162 EKAHDIFKTLSKKKFA---LLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDVCGG-MEA 217
E+A D + L +K L+LDD+W+ LK ++ TT V M
Sbjct: 228 EEAKDRLRVLMLRKHPRSLLILDDVWDPWVLK----AFDNQCQILLTTSDKSVTDSVMGP 283
Query: 218 RRMFKV-ACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIGRAMA 276
+ + V + L E E+ V + LP A ++ KEC+G PL + IG +
Sbjct: 284 KHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALL- 338
Query: 277 YKKTPEEWRYAIEVLRR 293
+ P W Y + L+
Sbjct: 339 -RDFPNRWAYYLRQLQN 354
>pdb|3EMU|A Chain A, Crystal Structure Of A Leucine Rich Repeat And Phosphatase
Domain Containing Protein From Entamoeba Histolytica
Length = 161
Score = 32.7 bits (73), Expect = 0.82, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 376 LEEVEDDQVKMHDVVRDMALWITCEIEKEKEGFLVYAGSGLTKAPADVRGWEM-VRRLSL 434
L+ V ++ +++D + + +I I++ KEG L+ +G+G+ KAPA V + M +RLS
Sbjct: 59 LDIVSEEGHQLYDSIPNAIKFIIRSIQR-KEGVLIISGTGVNKAPAIVIAFLMYYQRLSF 117
Query: 435 MK--NSIENL 442
+ N ++ L
Sbjct: 118 INAFNKVQGL 127
>pdb|3N8H|A Chain A, Crystal Structure Of Pantoate-Beta-Alanine Ligase From
Franc Tularensis
pdb|3N8H|B Chain B, Crystal Structure Of Pantoate-Beta-Alanine Ligase From
Franc Tularensis
pdb|3QTT|A Chain A, Crystal Structure Of Pantoate-Beta-Alanine Ligase From
Francisella Tularensis Complexed With Beta-Gamma Atp And
Beta-Alanine
pdb|3QTT|B Chain B, Crystal Structure Of Pantoate-Beta-Alanine Ligase From
Francisella Tularensis Complexed With Beta-Gamma Atp And
Beta-Alanine
Length = 264
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 683 NLKSISVRYCDDMEEIISAGEFDDIPEMTGIINSPFAKLQRLE 725
NL S + + + EI+ +F ++ E+T INS AKLQ ++
Sbjct: 193 NLTSTDIEIANKIYEILRQDDFSNLEELTNKINSTGAKLQYIQ 235
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 483 NIMLRQLPMGISKLVSLQLLDISNTSVTELPEDLKALVNLKCLNLVWAKELVVVPQQLLS 542
N+ + + I K L L ++ S+TELP ++K L NL+ L+L + L +P +L S
Sbjct: 233 NLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGS 291
Query: 543 NFSRLRVLRMF 553
F +L+ F
Sbjct: 292 CF-QLKYFYFF 301
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 475 LTVLKMSDNIMLRQLPMGISKLVSLQLLDISNTSVTELPEDLKALVNLK 523
LT L ++ N L +LP I L +L++LD+S+ +T LP +L + LK
Sbjct: 249 LTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296
>pdb|1JSW|A Chain A, Native L-Aspartate Ammonia Lyase
pdb|1JSW|B Chain B, Native L-Aspartate Ammonia Lyase
pdb|1JSW|C Chain C, Native L-Aspartate Ammonia Lyase
pdb|1JSW|D Chain D, Native L-Aspartate Ammonia Lyase
Length = 478
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 11/72 (15%)
Query: 480 MSDNIML-------RQLPM----GISKLVSLQLLDISNTSVTELPEDLKALVNLKCLNLV 528
MS+NI + R++P G+ L +++ ISN ++++PE ++ +V +K +
Sbjct: 1 MSNNIRIEEDLLGTREVPADAYYGVHTLRAIENFYISNNKISDIPEFVRGMVMVKKAAAM 60
Query: 529 WAKELVVVPQQL 540
KEL +P+ +
Sbjct: 61 ANKELQTIPKSV 72
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 430 RRLSLMKNSIENL-PTV-PTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLR 487
+RL L N I L P V +L L+ N N L I G F ++ LT L ++DN L+
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLK 94
Query: 488 QLPMG 492
+P G
Sbjct: 95 SIPRG 99
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 440 ENLPTVPT-CPHLLT-LFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGISKLV 497
+ L +PT P +T + L +N ++ I G F L + +S+N + P L
Sbjct: 21 KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 498 SLQLLDISNTSVTELPEDL 516
SL L + +TELP+ L
Sbjct: 81 SLNSLVLYGNKITELPKSL 99
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 440 ENLPTVPT-CPHLLT-LFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGISKLV 497
+ L +PT P +T + L +N ++ I G F L + +S+N + P L
Sbjct: 21 KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 498 SLQLLDISNTSVTELPEDL 516
SL L + +TELP+ L
Sbjct: 81 SLNSLVLYGNKITELPKSL 99
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 437 NSIENLPTVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGISKL 496
N I ++ + P L +L+L N + IT ++ L L + DN + +P+ + L
Sbjct: 122 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPL--AGL 177
Query: 497 VSLQLLDISNTSVTELPEDLKALVNLKCLNLV 528
LQ L +S ++ DL+AL LK L+++
Sbjct: 178 TKLQNLYLSKNHIS----DLRALAGLKNLDVL 205
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 454 LFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGISKLVSLQLLDISNTSVTEL 512
L L+ NPL I+ + L +L +S N++ L + L +L+ LD++N V EL
Sbjct: 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDL--ESLSTLRTLDLNNNYVQEL 95
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 413 GSGLTKA-PADVRGWEMVRRLSLMKNSIENLP--TVPTCPHLLTLFLNRNPLRTITGGFF 469
G+ +TK A ++G + +L L NSI + ++ PHL L LN N L + GG
Sbjct: 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA 260
Query: 470 QSMSCLTVLKMSDNI 484
V ++NI
Sbjct: 261 DHKYIQVVYLHNNNI 275
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 413 GSGLTKA-PADVRGWEMVRRLSLMKNSIENLP--TVPTCPHLLTLFLNRNPLRTITGGFF 469
G+ +TK A ++G + +L L NSI + ++ PHL L LN N L + GG
Sbjct: 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA 260
Query: 470 QSMSCLTVLKMSDNI 484
V ++NI
Sbjct: 261 DHKYIQVVYLHNNNI 275
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 449 PHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMG-ISKLVSLQLLDISNT 507
P L L L+R ++TI G +QS+S L+ L ++ N ++ L +G S L SLQ L
Sbjct: 54 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKL----- 107
Query: 508 SVTELPEDLKALVNLKCLNLVWAKELVVVPQQLLSNF 544
L +L +L N +L KEL V L+ +F
Sbjct: 108 --VALETNLASLENFPIGHLKTLKELNVA-HNLIQSF 141
>pdb|3HV8|A Chain A, Crystal Structure Of Fimx Eal Domain From Pseudomonas
Aeruginosa Bound To C-Di-Gmp
Length = 268
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 792 NAFRLCFQPLLRIGGAGHDLYE 813
N+FRL FQP++ + G H+ YE
Sbjct: 31 NSFRLLFQPVISLRGDSHENYE 52
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 454 LFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGISKLVSLQLLDISNTSVTEL 512
L L+ NPL I+ + L +L +S N++ L + L +L+ LD++N V EL
Sbjct: 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDL--ESLSTLRTLDLNNNYVQEL 95
>pdb|3HV9|A Chain A, Crystal Structure Of Fimx Eal Domain From Pseudomonas
Aeruginosa
Length = 265
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 792 NAFRLCFQPLLRIGGAGHDLYE 813
N+FRL FQP++ + G H+ YE
Sbjct: 28 NSFRLLFQPVISLRGDSHENYE 49
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 471 SMSCLTVLKMSDNIMLRQLPMGISKLVSLQLLDISNTSVTELPEDLKALVNLKCLNLVWA 530
++ L L +S N L+ LP+ L +L +LD+S +T LP L AL L L ++
Sbjct: 75 TLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLP--LGALRGLGELQELYL 131
Query: 531 K--ELVVVPQQLLSNFSRLRVLRM 552
K EL +P LL+ +L L +
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSL 155
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 471 SMSCLTVLKMSDNIMLRQLPMGISKLVSLQLLDISNTSVTELPEDLKALVNLKCLNLVWA 530
++ L L +S N L+ LP+ L +L +LD+S +T LP L AL L L ++
Sbjct: 75 TLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLP--LGALRGLGELQELYL 131
Query: 531 K--ELVVVPQQLLSNFSRLRVLRM 552
K EL +P LL+ +L L +
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSL 155
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 471 SMSCLTVLKMSDNIMLRQLPMGISKLVSLQLLDISNTSVTELPEDLKALVNLKCLNLVWA 530
++ L L +S N L+ LP+ L +L +LD+S +T LP L AL L L ++
Sbjct: 75 TLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLP--LGALRGLGELQELYL 131
Query: 531 K--ELVVVPQQLLSNFSRLRVLRM 552
K EL +P LL+ +L L +
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSL 155
>pdb|4J40|A Chain A, Crystal Structure Of The Dual-domain Ggdef-eal Module Of
Fimx From Pseudomonas Aeruginosa
pdb|4J40|B Chain B, Crystal Structure Of The Dual-domain Ggdef-eal Module Of
Fimx From Pseudomonas Aeruginosa
Length = 437
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 792 NAFRLCFQPLLRIGGAGHDLYE 813
N+FRL FQP++ + G H+ YE
Sbjct: 200 NSFRLLFQPVISLRGDSHENYE 221
>pdb|4AFY|A Chain A, Crystal Structure Of The Fimx Eal Domain In Complex With
Reaction Product Pgpg
pdb|4AFY|B Chain B, Crystal Structure Of The Fimx Eal Domain In Complex With
Reaction Product Pgpg
pdb|4AG0|A Chain A, Crystal Structure Of Fimx Eal Domain
pdb|4AG0|B Chain B, Crystal Structure Of Fimx Eal Domain
Length = 274
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 792 NAFRLCFQPLLRIGGAGHDLYE 813
N+FRL FQP++ + G H+ YE
Sbjct: 37 NSFRLLFQPVISLRGDSHENYE 58
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 416 LTKAPADVRGWEMVRRLSLMKNSIENLPTVPTCPHLLTLFLNRNPLRTITGGFFQSMSCL 475
+ K A + + + L+L N+IE + ++ +L L L RN ++ I L
Sbjct: 38 IEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIEN-LDAVADTL 96
Query: 476 TVLKMSDNIMLRQLPMGISKLVSLQLLDISNTSVTELPE--DLKALVNLKCLNL 527
L +S N + GI KLV+L++L +SN +T E L AL L+ L L
Sbjct: 97 EELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 148
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 416 LTKAPADVRGWEMVRRLSLMKNSIENLPTVPTCPHLLTLFLNRNPLRTITGGFFQSMSCL 475
+ K A + + + L+L N+IE + ++ +L L L RN ++ I L
Sbjct: 37 IEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIEN-LDAVADTL 95
Query: 476 TVLKMSDNIMLRQLPMGISKLVSLQLLDISNTSVTELPE--DLKALVNLKCLNL 527
L +S N + GI KLV+L++L +SN +T E L AL L+ L L
Sbjct: 96 EELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 147
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 471 SMSCLTVLKMSDNIMLRQLPMGISKLVSLQLLDISNTSVTELPEDLKALVNLKCLNLVWA 530
++ L L +S N L+ LP+ L +L +LD+S +T LP L AL L L ++
Sbjct: 75 TLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLP--LGALRGLGELQELYL 131
Query: 531 K--ELVVVPQQLLSNFSRLRVLRM 552
K EL +P LL+ +L L +
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSL 155
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 429 VRRLSLMKNSIENLPTVPTCPHLLTLFLNRNPLRTITGGFFQSMSCL 475
++ L + +N ++ LP P LL + ++RN L+++ G F ++ L
Sbjct: 453 LQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSL 499
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 471 SMSCLTVLKMSDNIMLRQLPMGISKLVSLQLLDISNTSVTELPEDLKALVNLKCLNLVWA 530
++ L L +S N L+ LP+ L +L +LD+S +T LP L AL L L ++
Sbjct: 75 TLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLP--LGALRGLGELQELYL 131
Query: 531 K--ELVVVPQQLLSNFSRLRVLRM 552
K EL +P LL+ +L L +
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSL 155
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 471 SMSCLTVLKMSDNIMLRQLPMGISKLVSLQLLDISNTSVTELPEDLKALVNLKCLNLVWA 530
++ L L +S N L+ LP+ L +L +LD+S +T LP L AL L L ++
Sbjct: 75 TLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLP--LGALRGLGELQELYL 131
Query: 531 K--ELVVVPQQLLSNFSRLRVLRM 552
K EL +P LL+ +L L +
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSL 155
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 16/102 (15%)
Query: 471 SMSCLTVLKMSDNIMLRQL--------PMGISKLVSLQLLDISNTSVTELPED-LKALVN 521
S S ++ +MLR++ P L +L +LD+SN ++ + ED L+ L N
Sbjct: 446 STSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLEN 505
Query: 522 LKCLNL-------VWAKELVVVPQQLLSNFSRLRVLRMFATG 556
L+ L+ +W + P L S L +L + + G
Sbjct: 506 LEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESNG 547
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 437 NSIENLPTVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGISKL 496
N I ++ + P L +L+L N + IT ++ L L + DN + +P+ + L
Sbjct: 122 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPL--AGL 177
Query: 497 VSLQLLDISNTSVTELPEDLKALVNLKCLNLV 528
LQ L +S ++ DL+AL LK L+++
Sbjct: 178 TKLQNLYLSKNHIS----DLRALAGLKNLDVL 205
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 437 NSIENLPTVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGISKL 496
N I ++ + P L +L+L N + IT ++ L L + DN + +P+ + L
Sbjct: 120 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPL--AGL 175
Query: 497 VSLQLLDISNTSVTELPEDLKALVNLKCLNLV 528
LQ L +S ++ DL+AL LK L+++
Sbjct: 176 TKLQNLYLSKNHIS----DLRALAGLKNLDVL 203
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 471 SMSCLTVLKMSDNIMLRQLPMGISKLVSLQLLDISNTSVTELPEDLKALVNLKCLNLVWA 530
++ L L +S N L+ LP+ L +L +LD+S +T LP L AL L L ++
Sbjct: 75 TLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLP--LGALRGLGELQELYL 131
Query: 531 K--ELVVVPQQLLSNFSRLRVLRM 552
K EL +P LL+ +L L +
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSL 155
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 471 SMSCLTVLKMSDNIMLRQLPMGISKLVSLQLLDISNTSVTELPEDLKALVNLKCLNLVWA 530
++ L L +S N L+ LP+ L +L +LD+S +T LP L AL L L ++
Sbjct: 76 TLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLP--LGALRGLGELQELYL 132
Query: 531 K--ELVVVPQQLLSNFSRLRVLRM 552
K EL +P LL+ +L L +
Sbjct: 133 KGNELKTLPPGLLTPTPKLEKLSL 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,980,995
Number of Sequences: 62578
Number of extensions: 979006
Number of successful extensions: 2382
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 2255
Number of HSP's gapped (non-prelim): 179
length of query: 814
length of database: 14,973,337
effective HSP length: 107
effective length of query: 707
effective length of database: 8,277,491
effective search space: 5852186137
effective search space used: 5852186137
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)