Query 003513
Match_columns 814
No_of_seqs 490 out of 4305
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 00:52:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 9.7E-90 2.1E-94 788.5 41.8 769 7-794 95-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.1E-71 2.5E-76 677.0 43.0 706 1-763 106-913 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 3.8E-43 8.2E-48 367.4 19.3 279 75-355 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 7.4E-23 1.6E-27 250.6 15.1 353 406-777 95-463 (968)
5 PLN00113 leucine-rich repeat r 99.9 2.2E-22 4.7E-27 246.5 15.6 345 408-776 144-509 (968)
6 KOG0444 Cytoskeletal regulator 99.9 1.8E-23 3.9E-28 217.5 -3.5 330 406-761 34-380 (1255)
7 PLN03210 Resistant to P. syrin 99.8 7.1E-21 1.5E-25 232.9 16.5 303 445-780 554-907 (1153)
8 KOG0444 Cytoskeletal regulator 99.8 1.6E-22 3.5E-27 210.4 -6.1 344 410-780 13-376 (1255)
9 KOG4194 Membrane glycoprotein 99.8 1.2E-21 2.7E-26 202.8 0.4 318 424-774 99-447 (873)
10 KOG4194 Membrane glycoprotein 99.8 5.8E-21 1.3E-25 197.9 4.6 320 407-761 55-409 (873)
11 KOG0472 Leucine-rich repeat pr 99.8 6.1E-21 1.3E-25 189.4 -5.3 307 409-754 188-539 (565)
12 KOG0472 Leucine-rich repeat pr 99.7 1.2E-19 2.6E-24 180.3 -9.0 167 412-590 145-313 (565)
13 PRK15387 E3 ubiquitin-protein 99.6 1.8E-15 3.9E-20 171.8 13.3 243 392-691 189-431 (788)
14 KOG0618 Serine/threonine phosp 99.6 1.2E-16 2.6E-21 175.2 1.1 87 429-517 47-134 (1081)
15 KOG0617 Ras suppressor protein 99.5 9.1E-17 2E-21 141.4 -5.5 161 421-591 27-190 (264)
16 PRK04841 transcriptional regul 99.5 8.2E-13 1.8E-17 161.4 25.9 293 65-399 9-333 (903)
17 PRK15370 E3 ubiquitin-protein 99.5 8.1E-14 1.7E-18 159.6 10.4 240 406-691 180-424 (754)
18 KOG0617 Ras suppressor protein 99.5 8.3E-16 1.8E-20 135.4 -5.0 162 438-636 22-184 (264)
19 PRK15387 E3 ubiquitin-protein 99.4 3.6E-13 7.9E-18 153.2 11.0 255 428-754 202-456 (788)
20 PRK15370 E3 ubiquitin-protein 99.4 3.1E-13 6.7E-18 154.9 8.3 141 428-589 179-319 (754)
21 COG2909 MalT ATP-dependent tra 99.4 4E-11 8.8E-16 132.2 23.5 297 64-400 13-340 (894)
22 PRK00411 cdc6 cell division co 99.4 7.2E-11 1.6E-15 129.3 25.2 294 68-379 28-358 (394)
23 KOG0618 Serine/threonine phosp 99.4 5E-14 1.1E-18 155.0 0.2 298 413-761 7-327 (1081)
24 KOG4237 Extracellular matrix p 99.4 1.2E-14 2.7E-19 144.8 -4.5 291 407-728 49-355 (498)
25 KOG4658 Apoptotic ATPase [Sign 99.3 4.8E-13 1E-17 155.7 5.1 327 407-762 526-866 (889)
26 TIGR02928 orc1/cdc6 family rep 99.3 8.7E-10 1.9E-14 119.5 27.2 294 69-379 14-350 (365)
27 PRK00080 ruvB Holliday junctio 99.3 4.2E-11 9.2E-16 126.7 15.8 277 69-381 24-312 (328)
28 PF01637 Arch_ATPase: Archaeal 99.3 2.6E-11 5.7E-16 122.7 11.6 193 72-270 1-233 (234)
29 TIGR00635 ruvB Holliday juncti 99.3 3.7E-10 8E-15 118.9 20.6 277 70-382 4-292 (305)
30 TIGR03015 pepcterm_ATPase puta 99.3 1E-09 2.2E-14 113.5 23.4 177 91-275 42-242 (269)
31 KOG4237 Extracellular matrix p 99.2 3.5E-12 7.5E-17 127.6 1.6 247 407-668 70-355 (498)
32 KOG4341 F-box protein containi 99.2 5.9E-13 1.3E-17 134.2 -3.9 309 449-806 138-468 (483)
33 cd00116 LRR_RI Leucine-rich re 99.2 1.1E-11 2.4E-16 132.0 2.6 139 446-587 20-178 (319)
34 PF05729 NACHT: NACHT domain 99.1 1.3E-09 2.8E-14 103.7 11.7 139 93-239 1-163 (166)
35 cd00116 LRR_RI Leucine-rich re 99.0 1.7E-10 3.6E-15 122.9 5.9 256 426-691 22-316 (319)
36 COG2256 MGS1 ATPase related to 99.0 1.8E-08 3.8E-13 102.6 18.0 221 71-319 25-266 (436)
37 KOG0532 Leucine-rich repeat (L 99.0 2.2E-11 4.8E-16 127.5 -2.9 190 407-611 53-245 (722)
38 PF14580 LRR_9: Leucine-rich r 99.0 3.3E-10 7.2E-15 105.7 5.2 105 425-532 17-125 (175)
39 PF14580 LRR_9: Leucine-rich r 99.0 7.6E-10 1.7E-14 103.3 6.5 124 405-530 20-150 (175)
40 KOG4341 F-box protein containi 99.0 2E-11 4.4E-16 123.3 -4.3 285 428-760 139-443 (483)
41 PRK06893 DNA replication initi 99.0 8.1E-09 1.8E-13 102.9 13.7 152 91-275 38-207 (229)
42 COG3899 Predicted ATPase [Gene 99.0 1.1E-08 2.4E-13 120.2 16.9 305 72-397 2-385 (849)
43 PRK07003 DNA polymerase III su 98.8 1.6E-07 3.5E-12 104.7 19.8 180 70-273 16-223 (830)
44 PRK13342 recombination factor 98.8 9.7E-08 2.1E-12 104.3 17.9 177 70-274 12-199 (413)
45 PRK04195 replication factor C 98.8 2.8E-07 6E-12 102.8 21.2 182 69-276 13-207 (482)
46 KOG0532 Leucine-rich repeat (L 98.8 1.8E-10 4E-15 120.7 -3.9 165 412-588 83-248 (722)
47 PF05496 RuvB_N: Holliday junc 98.8 4.8E-08 1E-12 93.0 12.6 174 69-276 23-226 (233)
48 TIGR03420 DnaA_homol_Hda DnaA 98.8 4.1E-08 8.9E-13 98.6 12.5 167 75-275 22-205 (226)
49 KOG1259 Nischarin, modulator o 98.8 1.8E-09 4E-14 104.3 1.8 181 419-636 206-410 (490)
50 COG2255 RuvB Holliday junction 98.8 7.9E-07 1.7E-11 86.4 19.0 192 70-275 26-227 (332)
51 PRK14960 DNA polymerase III su 98.8 3.5E-07 7.6E-12 101.0 18.8 189 70-270 15-218 (702)
52 COG3903 Predicted ATPase [Gene 98.8 2.5E-08 5.4E-13 102.4 8.9 288 91-400 13-316 (414)
53 PTZ00112 origin recognition co 98.7 3.9E-07 8.4E-12 102.1 18.3 171 69-241 754-951 (1164)
54 KOG3207 Beta-tubulin folding c 98.7 2.5E-09 5.4E-14 109.1 1.1 209 446-691 118-335 (505)
55 COG4886 Leucine-rich repeat (L 98.7 1E-08 2.3E-13 112.4 6.0 179 421-638 110-290 (394)
56 PRK08727 hypothetical protein; 98.7 1.8E-07 3.8E-12 93.6 13.5 163 72-268 21-201 (233)
57 KOG3207 Beta-tubulin folding c 98.7 3.1E-09 6.8E-14 108.4 0.6 158 425-588 119-285 (505)
58 PRK08084 DNA replication initi 98.7 2.9E-07 6.3E-12 92.1 14.4 171 70-274 23-212 (235)
59 PRK14961 DNA polymerase III su 98.7 7.9E-07 1.7E-11 95.3 18.3 190 70-271 16-220 (363)
60 KOG1259 Nischarin, modulator o 98.7 2.5E-09 5.5E-14 103.4 -0.8 131 422-557 279-411 (490)
61 PRK12323 DNA polymerase III su 98.7 3.6E-07 7.8E-12 100.7 15.5 193 70-271 16-225 (700)
62 PRK12402 replication factor C 98.7 4.3E-07 9.3E-12 97.4 16.1 192 70-271 15-226 (337)
63 PRK14949 DNA polymerase III su 98.7 5.6E-07 1.2E-11 102.6 16.7 178 70-271 16-220 (944)
64 KOG2028 ATPase related to the 98.6 6.5E-07 1.4E-11 89.4 14.7 174 71-266 139-331 (554)
65 KOG2120 SCF ubiquitin ligase, 98.6 9.5E-10 2.1E-14 106.4 -5.2 161 499-695 187-351 (419)
66 PRK05564 DNA polymerase III su 98.6 1.5E-06 3.3E-11 91.5 17.9 175 71-271 5-190 (313)
67 PLN03025 replication factor C 98.6 5.8E-07 1.3E-11 94.8 14.4 177 70-268 13-197 (319)
68 PRK14963 DNA polymerase III su 98.6 1.7E-06 3.7E-11 95.7 18.5 190 70-269 14-215 (504)
69 PF00308 Bac_DnaA: Bacterial d 98.6 6.7E-07 1.4E-11 88.3 13.8 183 70-274 9-211 (219)
70 PRK13341 recombination factor 98.6 1.5E-06 3.2E-11 99.9 18.5 173 70-270 28-216 (725)
71 PRK08691 DNA polymerase III su 98.6 8.5E-07 1.8E-11 99.1 15.9 178 70-271 16-220 (709)
72 PF14516 AAA_35: AAA-like doma 98.6 1.3E-05 2.8E-10 84.7 23.8 199 67-277 8-245 (331)
73 COG1474 CDC6 Cdc6-related prot 98.6 5E-06 1.1E-10 88.0 20.5 190 69-263 16-229 (366)
74 PRK00440 rfc replication facto 98.6 1.8E-06 3.8E-11 91.9 17.5 177 70-270 17-202 (319)
75 KOG2120 SCF ubiquitin ligase, 98.6 2.5E-09 5.5E-14 103.5 -3.9 182 473-694 185-375 (419)
76 PRK06645 DNA polymerase III su 98.6 2.5E-06 5.3E-11 93.9 18.1 192 70-269 21-227 (507)
77 cd00009 AAA The AAA+ (ATPases 98.6 4.7E-07 1E-11 84.0 11.0 120 73-210 1-131 (151)
78 PRK14957 DNA polymerase III su 98.5 2.6E-06 5.7E-11 94.3 17.8 181 70-273 16-223 (546)
79 PRK05642 DNA replication initi 98.5 1E-06 2.2E-11 88.1 13.3 172 71-275 21-212 (234)
80 PF13401 AAA_22: AAA domain; P 98.5 1.6E-07 3.5E-12 85.1 6.9 116 91-208 3-125 (131)
81 PRK07471 DNA polymerase III su 98.5 4.3E-06 9.2E-11 88.8 18.3 195 70-272 19-239 (365)
82 PRK09087 hypothetical protein; 98.5 1.3E-06 2.8E-11 86.5 13.5 143 91-275 43-199 (226)
83 PRK09112 DNA polymerase III su 98.5 3.1E-06 6.7E-11 89.3 16.7 194 70-272 23-241 (351)
84 PRK14951 DNA polymerase III su 98.5 2.8E-06 6.1E-11 95.3 17.1 194 70-271 16-225 (618)
85 PF13191 AAA_16: AAA ATPase do 98.5 2.5E-07 5.5E-12 89.6 7.8 45 72-116 2-48 (185)
86 TIGR02397 dnaX_nterm DNA polym 98.5 4.7E-06 1E-10 90.0 18.4 181 70-273 14-220 (355)
87 PRK14956 DNA polymerase III su 98.5 2.6E-06 5.6E-11 91.8 15.9 189 70-269 18-220 (484)
88 PTZ00202 tuzin; Provisional 98.5 3.2E-06 6.9E-11 88.1 15.8 162 64-239 256-434 (550)
89 PRK14964 DNA polymerase III su 98.5 3.2E-06 7E-11 92.2 16.9 179 70-270 13-216 (491)
90 PRK05896 DNA polymerase III su 98.5 2.6E-06 5.5E-11 94.4 16.0 191 70-272 16-222 (605)
91 PRK14962 DNA polymerase III su 98.5 4.1E-06 8.9E-11 91.9 17.6 184 70-275 14-223 (472)
92 COG4886 Leucine-rich repeat (L 98.5 8E-08 1.7E-12 105.4 4.1 172 407-589 119-292 (394)
93 PRK07994 DNA polymerase III su 98.5 3.1E-06 6.7E-11 95.2 16.4 192 70-272 16-221 (647)
94 PRK14969 DNA polymerase III su 98.5 3.9E-06 8.4E-11 93.8 17.1 179 70-271 16-221 (527)
95 PRK08903 DnaA regulatory inact 98.5 1.8E-06 3.9E-11 86.5 12.9 166 73-275 22-203 (227)
96 KOG1909 Ran GTPase-activating 98.4 4.8E-08 1E-12 97.2 0.9 215 447-693 28-281 (382)
97 PRK14958 DNA polymerase III su 98.4 4.1E-06 8.8E-11 93.0 15.8 178 70-270 16-219 (509)
98 PF13173 AAA_14: AAA domain 98.4 6.5E-07 1.4E-11 80.5 7.8 117 92-231 2-127 (128)
99 PRK09111 DNA polymerase III su 98.4 6.1E-06 1.3E-10 92.9 17.2 195 70-272 24-234 (598)
100 PRK07940 DNA polymerase III su 98.4 9.8E-06 2.1E-10 86.7 17.0 171 70-272 5-214 (394)
101 cd01128 rho_factor Transcripti 98.4 4.8E-07 1E-11 90.3 6.6 92 91-186 15-115 (249)
102 TIGR00678 holB DNA polymerase 98.4 9.1E-06 2E-10 78.7 15.3 157 81-267 3-187 (188)
103 KOG1909 Ran GTPase-activating 98.4 4.2E-08 9E-13 97.7 -1.1 241 422-693 25-309 (382)
104 PRK14959 DNA polymerase III su 98.4 1.3E-05 2.8E-10 89.4 18.2 194 70-275 16-225 (624)
105 PLN03150 hypothetical protein; 98.4 6.4E-07 1.4E-11 103.0 7.9 89 451-539 420-509 (623)
106 PRK07764 DNA polymerase III su 98.4 1.1E-05 2.5E-10 93.9 18.1 176 70-269 15-219 (824)
107 PF13855 LRR_8: Leucine rich r 98.4 5.1E-07 1.1E-11 69.0 4.6 60 449-509 1-61 (61)
108 PRK14955 DNA polymerase III su 98.3 9.1E-06 2E-10 88.2 15.7 196 70-270 16-227 (397)
109 PRK14087 dnaA chromosomal repl 98.3 7.9E-06 1.7E-10 89.6 15.2 166 92-275 141-323 (450)
110 PRK08451 DNA polymerase III su 98.3 1.9E-05 4.2E-10 87.0 18.2 177 70-272 14-219 (535)
111 PRK14971 DNA polymerase III su 98.3 1.8E-05 3.9E-10 89.9 18.3 177 70-269 17-220 (614)
112 PRK07133 DNA polymerase III su 98.3 1.5E-05 3.2E-10 90.3 17.1 185 70-271 18-219 (725)
113 PRK14952 DNA polymerase III su 98.3 1.8E-05 3.8E-10 88.7 17.4 182 70-275 13-224 (584)
114 PRK14088 dnaA chromosomal repl 98.3 1E-05 2.3E-10 88.6 15.4 181 71-272 107-306 (440)
115 TIGR01242 26Sp45 26S proteasom 98.3 6.2E-06 1.3E-10 88.8 13.5 167 71-265 123-328 (364)
116 PRK14953 DNA polymerase III su 98.3 2.5E-05 5.5E-10 86.2 17.8 176 70-272 16-221 (486)
117 TIGR00362 DnaA chromosomal rep 98.3 1.8E-05 4E-10 86.6 16.5 158 92-271 136-310 (405)
118 PRK14970 DNA polymerase III su 98.3 3.8E-05 8.2E-10 83.1 18.4 177 70-268 17-206 (367)
119 PRK14954 DNA polymerase III su 98.3 2.3E-05 5.1E-10 88.4 17.2 194 70-268 16-225 (620)
120 PRK14950 DNA polymerase III su 98.3 3.4E-05 7.3E-10 88.0 18.4 193 70-273 16-223 (585)
121 PRK06305 DNA polymerase III su 98.3 3.7E-05 8.1E-10 84.4 17.9 175 70-268 17-219 (451)
122 TIGR02903 spore_lon_C ATP-depe 98.2 1.4E-05 2.9E-10 91.3 14.6 200 69-274 153-398 (615)
123 PRK09376 rho transcription ter 98.2 3.7E-06 8.1E-11 87.3 8.8 92 91-186 168-268 (416)
124 PLN03150 hypothetical protein; 98.2 2.3E-06 5E-11 98.4 7.1 106 474-585 419-526 (623)
125 PRK14948 DNA polymerase III su 98.2 6E-05 1.3E-09 85.7 18.3 194 70-273 16-224 (620)
126 PRK06620 hypothetical protein; 98.2 1.9E-05 4.2E-10 77.5 12.1 135 93-271 45-189 (214)
127 PRK00149 dnaA chromosomal repl 98.2 3.3E-05 7.2E-10 85.6 15.3 158 92-271 148-322 (450)
128 PF05621 TniB: Bacterial TniB 98.2 6.1E-05 1.3E-09 75.7 15.4 189 77-270 44-260 (302)
129 PHA02544 44 clamp loader, smal 98.2 2.4E-05 5.1E-10 82.9 13.4 142 69-237 20-171 (316)
130 KOG1859 Leucine-rich repeat pr 98.1 5.5E-08 1.2E-12 105.2 -6.8 158 420-588 102-268 (1096)
131 TIGR03345 VI_ClpV1 type VI sec 98.1 2.6E-05 5.7E-10 92.2 14.6 178 70-265 187-390 (852)
132 PRK12422 chromosomal replicati 98.1 2.8E-05 6E-10 85.0 13.7 150 92-265 141-307 (445)
133 PRK03992 proteasome-activating 98.1 5.5E-05 1.2E-09 81.7 16.0 166 71-264 132-336 (389)
134 PRK05563 DNA polymerase III su 98.1 0.0001 2.2E-09 83.1 18.7 188 70-269 16-218 (559)
135 PRK06647 DNA polymerase III su 98.1 7.2E-05 1.6E-09 84.0 17.3 190 70-271 16-220 (563)
136 PF13855 LRR_8: Leucine rich r 98.1 2.5E-06 5.5E-11 65.2 3.7 57 427-483 1-59 (61)
137 PRK14086 dnaA chromosomal repl 98.1 7.4E-05 1.6E-09 83.1 15.8 159 92-272 314-489 (617)
138 TIGR00767 rho transcription te 98.1 1.5E-05 3.2E-10 83.5 9.7 94 91-186 167-267 (415)
139 TIGR02881 spore_V_K stage V sp 98.0 3.6E-05 7.7E-10 78.7 11.7 151 71-242 7-194 (261)
140 KOG2543 Origin recognition com 98.0 0.0001 2.2E-09 75.0 14.3 164 69-238 5-192 (438)
141 PRK11331 5-methylcytosine-spec 98.0 3.8E-05 8.1E-10 81.9 11.8 108 70-186 175-284 (459)
142 PTZ00361 26 proteosome regulat 98.0 7.5E-05 1.6E-09 80.8 14.3 149 71-243 184-371 (438)
143 PRK14965 DNA polymerase III su 98.0 0.00013 2.9E-09 82.7 16.7 192 70-273 16-223 (576)
144 KOG0531 Protein phosphatase 1, 98.0 1E-06 2.2E-11 96.8 -0.7 106 423-532 91-198 (414)
145 TIGR02639 ClpA ATP-dependent C 98.0 6.3E-05 1.4E-09 88.4 13.9 154 71-240 183-359 (731)
146 KOG0989 Replication factor C, 98.0 5.7E-05 1.2E-09 74.6 10.7 185 69-271 35-231 (346)
147 COG3267 ExeA Type II secretory 97.9 0.00054 1.2E-08 66.4 16.5 177 91-273 50-247 (269)
148 PRK05707 DNA polymerase III su 97.9 0.00041 8.8E-09 72.7 17.0 92 173-271 105-203 (328)
149 COG0593 DnaA ATPase involved i 97.9 7.3E-05 1.6E-09 78.9 11.3 148 91-263 112-278 (408)
150 KOG2982 Uncharacterized conser 97.9 2.7E-06 5.9E-11 82.9 0.5 100 428-530 46-156 (418)
151 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.7E-10 56.0 3.7 38 474-512 2-39 (44)
152 PRK07399 DNA polymerase III su 97.9 0.00045 9.8E-09 72.0 17.0 194 71-272 5-222 (314)
153 TIGR03689 pup_AAA proteasome A 97.9 0.00026 5.6E-09 77.8 15.8 155 71-241 183-380 (512)
154 PTZ00454 26S protease regulato 97.9 0.00029 6.3E-09 75.8 15.6 167 71-265 146-351 (398)
155 PF05673 DUF815: Protein of un 97.9 0.00058 1.3E-08 66.5 15.7 48 69-116 26-76 (249)
156 KOG2227 Pre-initiation complex 97.9 0.00081 1.8E-08 70.5 17.4 171 69-242 149-341 (529)
157 CHL00095 clpC Clp protease ATP 97.8 8.8E-05 1.9E-09 88.3 11.8 152 71-238 180-353 (821)
158 PRK11034 clpA ATP-dependent Cl 97.8 0.00017 3.8E-09 83.6 13.5 154 71-240 187-363 (758)
159 TIGR02880 cbbX_cfxQ probable R 97.8 0.00024 5.2E-09 73.2 13.1 152 71-241 23-210 (284)
160 KOG1859 Leucine-rich repeat pr 97.8 4.6E-07 9.9E-12 98.3 -7.0 128 426-558 163-292 (1096)
161 CHL00181 cbbX CbbX; Provisiona 97.8 0.00047 1E-08 71.0 15.1 153 71-242 24-212 (287)
162 TIGR03346 chaperone_ClpB ATP-d 97.8 0.00027 5.9E-09 84.4 15.2 152 71-240 174-350 (852)
163 PRK10865 protein disaggregatio 97.8 0.00015 3.3E-09 86.2 12.5 153 70-239 178-354 (857)
164 PRK10536 hypothetical protein; 97.8 0.00045 9.7E-09 68.2 13.4 132 70-208 55-212 (262)
165 PRK15386 type III secretion pr 97.8 6.7E-05 1.5E-09 79.1 8.1 64 469-538 48-112 (426)
166 KOG0531 Protein phosphatase 1, 97.8 3.9E-06 8.4E-11 92.2 -1.1 170 406-588 97-269 (414)
167 KOG4579 Leucine-rich repeat (L 97.8 2.7E-06 5.9E-11 73.3 -1.9 109 429-539 29-141 (177)
168 KOG2982 Uncharacterized conser 97.8 1.6E-05 3.5E-10 77.6 3.1 227 450-688 46-285 (418)
169 PRK08769 DNA polymerase III su 97.7 0.0012 2.5E-08 68.7 16.7 179 76-272 10-209 (319)
170 PRK08058 DNA polymerase III su 97.7 0.0009 1.9E-08 70.7 16.0 159 71-238 6-181 (329)
171 PF12799 LRR_4: Leucine Rich r 97.7 4E-05 8.8E-10 53.5 3.9 41 497-538 1-41 (44)
172 TIGR01241 FtsH_fam ATP-depende 97.7 0.00098 2.1E-08 74.9 17.0 175 70-271 55-267 (495)
173 KOG3665 ZYG-1-like serine/thre 97.7 2.8E-05 6.1E-10 89.2 3.7 129 427-557 122-262 (699)
174 smart00382 AAA ATPases associa 97.7 0.00018 3.9E-09 65.9 8.5 87 93-186 3-90 (148)
175 CHL00176 ftsH cell division pr 97.6 0.00068 1.5E-08 77.3 14.3 167 70-263 183-386 (638)
176 PF13177 DNA_pol3_delta2: DNA 97.6 0.00081 1.8E-08 62.9 12.4 135 74-227 1-162 (162)
177 PF10443 RNA12: RNA12 protein; 97.6 0.0041 8.8E-08 65.7 18.3 200 75-282 1-289 (431)
178 PRK08116 hypothetical protein; 97.6 0.00013 2.8E-09 74.3 7.2 98 93-208 115-220 (268)
179 COG0466 Lon ATP-dependent Lon 97.6 0.0002 4.4E-09 78.9 8.8 150 69-239 322-508 (782)
180 COG1222 RPT1 ATP-dependent 26S 97.6 0.0019 4.1E-08 65.6 15.0 176 72-275 153-371 (406)
181 PRK15386 type III secretion pr 97.6 0.0001 2.2E-09 77.8 5.8 79 425-514 50-132 (426)
182 KOG1947 Leucine rich repeat pr 97.6 1.4E-05 2.9E-10 90.6 -0.7 66 518-586 241-307 (482)
183 PRK06871 DNA polymerase III su 97.5 0.005 1.1E-07 64.1 17.7 174 78-268 10-200 (325)
184 KOG0733 Nuclear AAA ATPase (VC 97.5 0.0021 4.5E-08 69.6 14.5 167 71-264 191-395 (802)
185 PF02562 PhoH: PhoH-like prote 97.5 0.00026 5.7E-09 67.9 7.2 128 74-208 4-155 (205)
186 KOG0991 Replication factor C, 97.5 0.0004 8.6E-09 65.7 8.0 73 70-144 27-99 (333)
187 PRK07993 DNA polymerase III su 97.5 0.004 8.8E-08 65.5 16.5 177 77-271 9-204 (334)
188 TIGR00602 rad24 checkpoint pro 97.5 0.00077 1.7E-08 76.2 11.7 48 69-116 83-134 (637)
189 PRK12608 transcription termina 97.5 0.00077 1.7E-08 70.4 10.6 107 78-186 119-232 (380)
190 PRK06090 DNA polymerase III su 97.4 0.0051 1.1E-07 63.9 16.3 175 77-272 10-202 (319)
191 PRK08118 topology modulation p 97.4 0.00038 8.2E-09 65.5 7.2 36 93-128 2-37 (167)
192 KOG1644 U2-associated snRNP A' 97.4 0.00034 7.3E-09 65.0 6.3 81 429-510 44-126 (233)
193 PF00004 AAA: ATPase family as 97.4 0.00032 6.9E-09 63.4 6.0 22 95-116 1-22 (132)
194 PRK12377 putative replication 97.4 0.00072 1.6E-08 67.6 8.8 73 92-184 101-173 (248)
195 COG2812 DnaX DNA polymerase II 97.4 0.0017 3.6E-08 71.0 12.1 187 70-268 16-217 (515)
196 PRK08181 transposase; Validate 97.3 0.0011 2.4E-08 67.1 9.3 95 93-208 107-208 (269)
197 KOG3665 ZYG-1-like serine/thre 97.3 0.00016 3.5E-09 83.1 3.5 135 449-585 122-261 (699)
198 PF04665 Pox_A32: Poxvirus A32 97.3 0.00065 1.4E-08 66.8 7.1 37 93-132 14-50 (241)
199 TIGR02640 gas_vesic_GvpN gas v 97.3 0.0067 1.5E-07 61.9 14.8 55 77-140 9-63 (262)
200 PRK04296 thymidine kinase; Pro 97.2 0.00037 8.1E-09 67.2 5.1 113 93-211 3-118 (190)
201 KOG1514 Origin recognition com 97.2 0.011 2.5E-07 65.3 15.9 196 70-272 396-622 (767)
202 TIGR01243 CDC48 AAA family ATP 97.2 0.0067 1.4E-07 71.8 15.5 167 71-265 454-657 (733)
203 TIGR02012 tigrfam_recA protein 97.2 0.0029 6.3E-08 65.5 10.9 135 31-185 4-144 (321)
204 PRK04132 replication factor C 97.2 0.0062 1.3E-07 71.1 14.7 154 97-272 569-732 (846)
205 smart00763 AAA_PrkA PrkA AAA d 97.2 0.0015 3.1E-08 68.1 8.5 47 70-116 51-102 (361)
206 PRK07261 topology modulation p 97.1 0.0015 3.2E-08 61.9 7.9 66 94-185 2-68 (171)
207 PF00448 SRP54: SRP54-type pro 97.1 0.0016 3.5E-08 62.8 8.3 88 93-183 2-92 (196)
208 KOG1947 Leucine rich repeat pr 97.1 9.1E-05 2E-09 83.8 -0.5 243 447-735 186-443 (482)
209 KOG4579 Leucine-rich repeat (L 97.1 8.9E-05 1.9E-09 64.2 -0.5 88 427-516 53-142 (177)
210 cd00983 recA RecA is a bacter 97.1 0.0034 7.4E-08 65.0 11.0 135 31-185 4-144 (325)
211 TIGR02639 ClpA ATP-dependent C 97.1 0.0029 6.2E-08 74.6 11.8 103 70-186 454-565 (731)
212 COG0470 HolB ATPase involved i 97.1 0.0032 6.9E-08 67.1 11.2 140 71-228 2-170 (325)
213 PF07693 KAP_NTPase: KAP famil 97.1 0.012 2.6E-07 62.6 15.6 42 75-116 1-44 (325)
214 cd01120 RecA-like_NTPases RecA 97.1 0.0021 4.5E-08 60.5 8.7 39 94-135 1-39 (165)
215 KOG0741 AAA+-type ATPase [Post 97.1 0.0056 1.2E-07 65.1 12.1 140 91-261 537-704 (744)
216 CHL00195 ycf46 Ycf46; Provisio 97.1 0.006 1.3E-07 67.4 13.1 170 70-265 228-429 (489)
217 TIGR01243 CDC48 AAA family ATP 97.1 0.0052 1.1E-07 72.7 13.6 170 71-267 179-383 (733)
218 KOG1969 DNA replication checkp 97.1 0.001 2.2E-08 73.4 7.0 74 90-186 324-399 (877)
219 PHA00729 NTP-binding motif con 97.1 0.0026 5.6E-08 61.9 9.0 35 81-116 7-41 (226)
220 PRK09354 recA recombinase A; P 97.1 0.0044 9.6E-08 64.6 11.4 135 31-185 9-149 (349)
221 TIGR00763 lon ATP-dependent pr 97.1 0.0037 8E-08 74.1 12.2 47 70-116 320-371 (775)
222 PRK09361 radB DNA repair and r 97.1 0.0024 5.3E-08 63.8 9.1 89 91-184 22-117 (225)
223 cd01393 recA_like RecA is a b 97.1 0.0046 9.9E-08 61.9 11.1 91 91-185 18-125 (226)
224 PRK06921 hypothetical protein; 97.0 0.00069 1.5E-08 68.9 5.0 39 91-131 116-154 (266)
225 PRK10787 DNA-binding ATP-depen 97.0 0.0019 4.2E-08 75.7 9.3 156 69-239 321-506 (784)
226 PRK06526 transposase; Provisio 97.0 0.0012 2.6E-08 66.5 6.4 25 92-116 98-122 (254)
227 KOG0744 AAA+-type ATPase [Post 97.0 0.005 1.1E-07 61.5 10.1 82 92-186 177-262 (423)
228 PRK06964 DNA polymerase III su 97.0 0.036 7.8E-07 58.3 17.3 89 173-272 131-226 (342)
229 COG1223 Predicted ATPase (AAA+ 97.0 0.015 3.3E-07 56.3 12.9 167 70-264 121-318 (368)
230 TIGR02237 recomb_radB DNA repa 97.0 0.0026 5.7E-08 62.7 8.4 90 91-184 11-107 (209)
231 KOG2004 Mitochondrial ATP-depe 97.0 0.0016 3.5E-08 71.7 7.2 153 69-239 410-596 (906)
232 COG0542 clpA ATP-binding subun 97.0 0.0013 2.9E-08 74.8 6.8 107 69-186 490-605 (786)
233 COG5238 RNA1 Ran GTPase-activa 97.0 0.0013 2.8E-08 63.9 5.6 162 426-588 29-228 (388)
234 cd01123 Rad51_DMC1_radA Rad51_ 97.0 0.0044 9.5E-08 62.4 9.9 93 91-185 18-126 (235)
235 PRK09183 transposase/IS protei 96.9 0.0024 5.1E-08 64.9 7.7 25 92-116 102-126 (259)
236 cd01394 radB RadB. The archaea 96.9 0.0059 1.3E-07 60.7 10.4 42 91-135 18-59 (218)
237 KOG0733 Nuclear AAA ATPase (VC 96.9 0.0075 1.6E-07 65.4 11.3 141 91-255 544-710 (802)
238 KOG1644 U2-associated snRNP A' 96.9 0.0016 3.5E-08 60.6 5.4 103 449-554 42-149 (233)
239 PRK07952 DNA replication prote 96.9 0.0062 1.3E-07 60.8 9.9 90 78-186 84-174 (244)
240 PRK10865 protein disaggregatio 96.9 0.0055 1.2E-07 73.1 11.2 61 70-133 568-636 (857)
241 PF08423 Rad51: Rad51; InterP 96.9 0.0047 1E-07 62.5 9.1 93 91-184 37-143 (256)
242 KOG2739 Leucine-rich acidic nu 96.9 0.00064 1.4E-08 66.1 2.7 105 425-530 41-153 (260)
243 PF01695 IstB_IS21: IstB-like 96.9 0.0021 4.5E-08 61.2 6.1 74 91-185 46-119 (178)
244 cd01131 PilT Pilus retraction 96.8 0.0014 3E-08 63.8 4.9 109 93-211 2-111 (198)
245 PF13207 AAA_17: AAA domain; P 96.8 0.00092 2E-08 59.3 3.4 23 94-116 1-23 (121)
246 CHL00095 clpC Clp protease ATP 96.8 0.0028 6.1E-08 75.6 8.4 107 69-186 508-623 (821)
247 KOG0743 AAA+-type ATPase [Post 96.8 0.27 5.8E-06 52.3 21.4 147 93-276 236-414 (457)
248 COG1373 Predicted ATPase (AAA+ 96.8 0.017 3.6E-07 62.6 13.3 136 73-236 20-164 (398)
249 COG1875 NYN ribonuclease and A 96.8 0.0022 4.8E-08 65.2 6.0 133 73-208 227-387 (436)
250 KOG0730 AAA+-type ATPase [Post 96.8 0.026 5.6E-07 62.3 14.4 160 71-253 435-629 (693)
251 PRK05800 cobU adenosylcobinami 96.8 0.00085 1.8E-08 63.1 2.9 152 93-268 2-169 (170)
252 PRK06835 DNA replication prote 96.8 0.0021 4.5E-08 67.3 6.0 36 93-131 184-219 (329)
253 TIGR03877 thermo_KaiC_1 KaiC d 96.8 0.009 2E-07 60.0 10.4 50 90-144 19-68 (237)
254 KOG0735 AAA+-type ATPase [Post 96.8 0.013 2.8E-07 64.8 11.8 158 91-272 430-617 (952)
255 TIGR02902 spore_lonB ATP-depen 96.8 0.031 6.7E-07 63.1 15.5 46 70-116 65-110 (531)
256 cd00544 CobU Adenosylcobinamid 96.8 0.0023 5E-08 60.1 5.5 147 94-266 1-167 (169)
257 TIGR02238 recomb_DMC1 meiotic 96.8 0.0077 1.7E-07 62.7 9.9 93 91-184 95-201 (313)
258 KOG2228 Origin recognition com 96.7 0.013 2.7E-07 59.2 10.6 165 70-239 24-219 (408)
259 PLN03187 meiotic recombination 96.7 0.01 2.3E-07 62.2 10.5 93 91-184 125-231 (344)
260 COG0542 clpA ATP-binding subun 96.7 0.0075 1.6E-07 68.9 10.0 152 71-239 171-346 (786)
261 PF10236 DAP3: Mitochondrial r 96.7 0.07 1.5E-06 55.7 16.5 49 220-268 258-306 (309)
262 COG5238 RNA1 Ran GTPase-activa 96.7 0.00039 8.5E-09 67.3 -0.2 84 447-531 28-131 (388)
263 cd01133 F1-ATPase_beta F1 ATP 96.7 0.004 8.6E-08 62.6 6.8 93 91-186 68-175 (274)
264 TIGR03346 chaperone_ClpB ATP-d 96.7 0.0069 1.5E-07 72.6 10.0 62 70-134 565-634 (852)
265 PRK06067 flagellar accessory p 96.7 0.013 2.8E-07 58.9 10.5 89 90-184 23-130 (234)
266 PRK06696 uridine kinase; Valid 96.6 0.0029 6.3E-08 63.0 5.6 43 74-116 2-46 (223)
267 PRK08699 DNA polymerase III su 96.6 0.029 6.3E-07 58.8 13.2 66 173-238 112-184 (325)
268 PRK10733 hflB ATP-dependent me 96.6 0.02 4.4E-07 66.2 13.1 149 71-242 153-338 (644)
269 COG1484 DnaC DNA replication p 96.6 0.0093 2E-07 60.2 9.1 75 91-185 104-178 (254)
270 KOG2739 Leucine-rich acidic nu 96.6 0.00097 2.1E-08 64.9 1.9 104 447-554 41-152 (260)
271 TIGR03345 VI_ClpV1 type VI sec 96.6 0.0056 1.2E-07 72.8 8.6 47 70-116 566-620 (852)
272 KOG2123 Uncharacterized conser 96.6 0.00024 5.1E-09 69.1 -2.5 86 448-537 18-105 (388)
273 KOG2123 Uncharacterized conser 96.6 0.00024 5.3E-09 69.0 -2.5 94 409-503 24-123 (388)
274 PRK08939 primosomal protein Dn 96.6 0.014 3E-07 60.7 10.1 113 74-207 135-259 (306)
275 cd01121 Sms Sms (bacterial rad 96.5 0.0078 1.7E-07 64.2 8.4 86 91-185 81-169 (372)
276 KOG0734 AAA+-type ATPase conta 96.5 0.026 5.6E-07 60.4 11.9 46 71-116 305-361 (752)
277 COG0572 Udk Uridine kinase [Nu 96.5 0.0068 1.5E-07 58.2 7.1 79 91-175 7-85 (218)
278 cd03115 SRP The signal recogni 96.5 0.0099 2.1E-07 56.6 8.4 88 94-184 2-92 (173)
279 TIGR02858 spore_III_AA stage I 96.5 0.019 4.2E-07 58.2 10.5 125 79-211 98-231 (270)
280 PRK04301 radA DNA repair and r 96.5 0.02 4.4E-07 60.3 11.1 59 91-150 101-162 (317)
281 PRK05541 adenylylsulfate kinas 96.5 0.0063 1.4E-07 58.1 6.6 37 91-130 6-42 (176)
282 PRK00771 signal recognition pa 96.5 0.022 4.8E-07 61.9 11.4 89 91-183 94-184 (437)
283 PF00154 RecA: recA bacterial 96.5 0.028 6E-07 58.1 11.4 136 32-186 2-143 (322)
284 PF03215 Rad17: Rad17 cell cyc 96.5 0.036 7.8E-07 61.8 13.1 55 71-130 20-78 (519)
285 PRK10463 hydrogenase nickel in 96.5 0.02 4.3E-07 58.1 10.2 27 90-116 102-128 (290)
286 PRK10867 signal recognition pa 96.4 0.023 5E-07 61.6 11.2 91 91-183 99-192 (433)
287 PRK13531 regulatory ATPase Rav 96.4 0.0043 9.3E-08 67.2 5.6 44 70-116 20-63 (498)
288 TIGR02239 recomb_RAD51 DNA rep 96.4 0.018 4E-07 60.1 10.0 61 90-151 94-157 (316)
289 PTZ00035 Rad51 protein; Provis 96.4 0.026 5.7E-07 59.5 11.1 95 90-185 116-224 (337)
290 KOG0731 AAA+-type ATPase conta 96.4 0.073 1.6E-06 60.7 15.0 171 71-268 312-521 (774)
291 PRK09519 recA DNA recombinatio 96.4 0.03 6.5E-07 64.7 12.3 134 32-185 10-149 (790)
292 PRK04328 hypothetical protein; 96.4 0.016 3.5E-07 58.6 9.1 41 91-134 22-62 (249)
293 KOG0736 Peroxisome assembly fa 96.4 0.11 2.3E-06 58.5 15.6 93 71-186 673-776 (953)
294 PF06309 Torsin: Torsin; Inte 96.4 0.034 7.3E-07 48.4 9.5 46 71-116 26-77 (127)
295 COG2607 Predicted ATPase (AAA+ 96.3 0.019 4.1E-07 55.2 8.6 47 70-116 60-109 (287)
296 PRK07132 DNA polymerase III su 96.3 0.15 3.2E-06 52.7 16.0 168 78-272 4-186 (299)
297 COG1066 Sms Predicted ATP-depe 96.3 0.015 3.3E-07 60.5 8.5 86 92-185 93-179 (456)
298 PLN00020 ribulose bisphosphate 96.3 0.0066 1.4E-07 62.9 5.8 145 91-266 147-333 (413)
299 PRK14974 cell division protein 96.3 0.036 7.8E-07 58.1 11.4 90 91-184 139-232 (336)
300 cd00561 CobA_CobO_BtuR ATP:cor 96.3 0.016 3.5E-07 53.3 7.7 113 93-210 3-139 (159)
301 COG1102 Cmk Cytidylate kinase 96.3 0.0088 1.9E-07 53.7 5.7 45 94-152 2-46 (179)
302 PRK11889 flhF flagellar biosyn 96.3 0.036 7.9E-07 58.3 11.1 88 91-183 240-329 (436)
303 PRK15455 PrkA family serine pr 96.3 0.0049 1.1E-07 67.6 5.0 46 71-116 77-127 (644)
304 COG1618 Predicted nucleotide k 96.3 0.005 1.1E-07 55.3 4.1 25 92-116 5-29 (179)
305 PRK13695 putative NTPase; Prov 96.2 0.0061 1.3E-07 58.0 5.1 23 94-116 2-24 (174)
306 TIGR00064 ftsY signal recognit 96.2 0.026 5.6E-07 57.7 9.7 90 91-184 71-164 (272)
307 KOG0652 26S proteasome regulat 96.2 0.18 4E-06 48.9 14.6 160 71-255 172-371 (424)
308 KOG0739 AAA+-type ATPase [Post 96.2 0.061 1.3E-06 53.3 11.6 167 71-265 134-335 (439)
309 PF13604 AAA_30: AAA domain; P 96.2 0.0032 6.9E-08 61.1 3.0 26 91-116 17-42 (196)
310 PF00485 PRK: Phosphoribulokin 96.2 0.039 8.4E-07 53.6 10.6 82 94-178 1-87 (194)
311 KOG2035 Replication factor C, 96.2 0.16 3.5E-06 50.1 14.3 227 71-316 14-282 (351)
312 TIGR03881 KaiC_arch_4 KaiC dom 96.2 0.033 7.2E-07 55.7 10.5 46 91-141 19-64 (229)
313 KOG1051 Chaperone HSP104 and r 96.2 0.026 5.6E-07 65.6 10.6 103 70-186 562-672 (898)
314 TIGR00959 ffh signal recogniti 96.2 0.024 5.2E-07 61.5 9.7 91 92-184 99-192 (428)
315 PF14532 Sigma54_activ_2: Sigm 96.2 0.0053 1.1E-07 55.9 4.0 44 73-116 1-45 (138)
316 PRK14722 flhF flagellar biosyn 96.2 0.02 4.3E-07 60.7 8.7 88 92-184 137-225 (374)
317 PLN03186 DNA repair protein RA 96.2 0.034 7.4E-07 58.5 10.4 93 91-184 122-228 (342)
318 TIGR02236 recomb_radA DNA repa 96.2 0.043 9.3E-07 57.8 11.4 59 91-150 94-155 (310)
319 COG4608 AppF ABC-type oligopep 96.1 0.027 5.9E-07 55.8 8.9 121 91-215 38-176 (268)
320 PRK11823 DNA repair protein Ra 96.1 0.021 4.6E-07 62.8 9.2 85 91-184 79-166 (446)
321 PRK08233 hypothetical protein; 96.1 0.02 4.3E-07 55.0 8.0 25 92-116 3-27 (182)
322 PF13481 AAA_25: AAA domain; P 96.1 0.022 4.8E-07 55.3 8.1 42 93-134 33-81 (193)
323 COG0464 SpoVK ATPases of the A 96.1 0.039 8.4E-07 62.4 11.2 149 71-242 243-426 (494)
324 PRK05973 replicative DNA helic 96.1 0.05 1.1E-06 53.9 10.4 49 91-144 63-111 (237)
325 cd03214 ABC_Iron-Siderophores_ 96.0 0.024 5.2E-07 54.3 8.1 117 92-212 25-161 (180)
326 cd03247 ABCC_cytochrome_bd The 96.0 0.033 7.2E-07 53.2 9.0 123 92-223 28-169 (178)
327 TIGR03499 FlhF flagellar biosy 96.0 0.027 5.9E-07 58.0 8.8 87 91-182 193-280 (282)
328 PF06745 KaiC: KaiC; InterPro 96.0 0.013 2.9E-07 58.5 6.4 89 91-185 18-126 (226)
329 TIGR01425 SRP54_euk signal rec 96.0 0.029 6.2E-07 60.5 9.1 38 91-131 99-136 (429)
330 PRK11034 clpA ATP-dependent Cl 96.0 0.014 3.1E-07 68.0 7.3 103 70-186 458-569 (758)
331 TIGR02655 circ_KaiC circadian 96.0 0.041 8.8E-07 61.6 10.7 99 80-184 250-363 (484)
332 KOG0728 26S proteasome regulat 96.0 0.4 8.6E-06 46.4 15.5 163 72-259 148-351 (404)
333 PF13238 AAA_18: AAA domain; P 96.0 0.0056 1.2E-07 54.9 3.2 22 95-116 1-22 (129)
334 PF03308 ArgK: ArgK protein; 96.0 0.013 2.9E-07 57.6 5.9 59 78-137 14-73 (266)
335 PF01583 APS_kinase: Adenylyls 96.0 0.0077 1.7E-07 55.1 3.9 35 93-130 3-37 (156)
336 PRK06547 hypothetical protein; 96.0 0.011 2.4E-07 55.7 5.2 33 83-116 7-39 (172)
337 COG0467 RAD55 RecA-superfamily 95.9 0.067 1.4E-06 54.7 11.3 50 90-144 21-70 (260)
338 cd03228 ABCC_MRP_Like The MRP 95.9 0.026 5.7E-07 53.5 7.7 123 91-223 27-167 (171)
339 cd01124 KaiC KaiC is a circadi 95.9 0.024 5.3E-07 54.7 7.7 45 94-143 1-45 (187)
340 PRK07667 uridine kinase; Provi 95.9 0.017 3.7E-07 55.9 6.5 38 79-116 3-41 (193)
341 cd01129 PulE-GspE PulE/GspE Th 95.9 0.022 4.8E-07 58.0 7.3 120 73-207 62-182 (264)
342 COG4088 Predicted nucleotide k 95.8 0.0045 9.7E-08 57.8 1.9 24 93-116 2-25 (261)
343 cd01125 repA Hexameric Replica 95.8 0.067 1.4E-06 53.9 10.7 141 94-234 3-199 (239)
344 COG4133 CcmA ABC-type transpor 95.8 0.044 9.5E-07 50.8 8.2 34 93-129 29-62 (209)
345 cd03246 ABCC_Protease_Secretio 95.8 0.024 5.2E-07 53.9 6.9 125 92-223 28-168 (173)
346 PTZ00301 uridine kinase; Provi 95.8 0.017 3.8E-07 56.3 6.0 25 92-116 3-27 (210)
347 COG1136 SalX ABC-type antimicr 95.8 0.055 1.2E-06 52.8 9.2 126 92-223 31-215 (226)
348 COG1703 ArgK Putative periplas 95.8 0.018 3.9E-07 57.5 5.9 61 79-140 37-98 (323)
349 PRK05342 clpX ATP-dependent pr 95.8 0.038 8.2E-07 59.8 9.1 48 69-116 70-132 (412)
350 cd02019 NK Nucleoside/nucleoti 95.8 0.0082 1.8E-07 46.9 2.9 23 94-116 1-23 (69)
351 PRK12727 flagellar biosynthesi 95.7 0.04 8.6E-07 60.5 8.9 89 91-184 349-438 (559)
352 COG2842 Uncharacterized ATPase 95.7 0.24 5.3E-06 49.7 13.6 106 69-186 71-177 (297)
353 PRK12726 flagellar biosynthesi 95.7 0.046 1E-06 57.4 9.0 88 91-184 205-295 (407)
354 cd03223 ABCD_peroxisomal_ALDP 95.7 0.072 1.6E-06 50.1 9.7 122 91-223 26-160 (166)
355 KOG2170 ATPase of the AAA+ sup 95.7 0.03 6.6E-07 55.7 7.1 102 70-186 82-190 (344)
356 PRK12678 transcription termina 95.7 0.012 2.7E-07 64.3 4.9 101 82-186 406-515 (672)
357 TIGR00416 sms DNA repair prote 95.7 0.04 8.7E-07 60.7 9.0 95 80-184 81-180 (454)
358 PF00006 ATP-synt_ab: ATP synt 95.7 0.047 1E-06 53.3 8.5 98 83-186 6-117 (215)
359 PRK13765 ATP-dependent proteas 95.7 0.019 4.1E-07 65.4 6.6 74 70-149 31-104 (637)
360 PRK08533 flagellar accessory p 95.7 0.065 1.4E-06 53.4 9.7 49 91-144 23-71 (230)
361 cd03238 ABC_UvrA The excision 95.7 0.044 9.4E-07 51.9 7.9 120 92-223 21-161 (176)
362 COG0468 RecA RecA/RadA recombi 95.7 0.063 1.4E-06 54.4 9.5 92 90-185 58-152 (279)
363 COG2884 FtsE Predicted ATPase 95.6 0.056 1.2E-06 50.2 8.0 121 91-215 27-203 (223)
364 PRK15453 phosphoribulokinase; 95.6 0.065 1.4E-06 53.9 9.2 80 91-173 4-89 (290)
365 KOG1532 GTPase XAB1, interacts 95.6 0.073 1.6E-06 52.1 9.1 62 91-153 18-88 (366)
366 PRK12723 flagellar biosynthesi 95.6 0.064 1.4E-06 57.4 9.8 90 91-184 173-264 (388)
367 TIGR00235 udk uridine kinase. 95.6 0.027 5.9E-07 55.3 6.5 26 91-116 5-30 (207)
368 PRK00889 adenylylsulfate kinas 95.6 0.034 7.3E-07 53.0 7.0 26 91-116 3-28 (175)
369 PF07728 AAA_5: AAA domain (dy 95.6 0.028 6.1E-07 51.2 6.1 42 95-142 2-43 (139)
370 PF07726 AAA_3: ATPase family 95.6 0.0073 1.6E-07 52.6 2.0 28 95-125 2-29 (131)
371 PF00910 RNA_helicase: RNA hel 95.6 0.0089 1.9E-07 51.5 2.6 22 95-116 1-22 (107)
372 TIGR01420 pilT_fam pilus retra 95.6 0.021 4.7E-07 60.7 6.1 104 92-207 122-228 (343)
373 COG1419 FlhF Flagellar GTP-bin 95.6 0.11 2.3E-06 54.8 10.9 72 92-166 203-275 (407)
374 TIGR03575 selen_PSTK_euk L-ser 95.5 0.043 9.4E-07 57.4 8.1 22 95-116 2-23 (340)
375 TIGR00390 hslU ATP-dependent p 95.5 0.035 7.6E-07 59.0 7.3 47 70-116 12-71 (441)
376 TIGR00150 HI0065_YjeE ATPase, 95.5 0.024 5.3E-07 50.4 5.3 40 77-116 6-46 (133)
377 TIGR03878 thermo_KaiC_2 KaiC d 95.5 0.037 8.1E-07 56.3 7.4 40 91-133 35-74 (259)
378 PRK09270 nucleoside triphospha 95.5 0.023 5E-07 56.8 5.8 27 90-116 31-57 (229)
379 PF13306 LRR_5: Leucine rich r 95.5 0.043 9.2E-07 49.1 7.1 117 423-547 8-128 (129)
380 COG0714 MoxR-like ATPases [Gen 95.5 0.034 7.4E-07 59.0 7.4 65 70-143 24-88 (329)
381 KOG0727 26S proteasome regulat 95.5 0.26 5.7E-06 47.7 12.3 157 72-252 157-352 (408)
382 COG0465 HflB ATP-dependent Zn 95.5 0.23 4.9E-06 55.6 13.8 170 70-266 150-356 (596)
383 COG1428 Deoxynucleoside kinase 95.5 0.012 2.5E-07 55.8 3.3 47 92-144 4-50 (216)
384 PRK05703 flhF flagellar biosyn 95.5 0.051 1.1E-06 59.3 8.7 87 92-183 221-308 (424)
385 PRK05480 uridine/cytidine kina 95.5 0.013 2.9E-07 57.7 3.9 26 91-116 5-30 (209)
386 PF13671 AAA_33: AAA domain; P 95.5 0.012 2.6E-07 53.9 3.4 23 94-116 1-23 (143)
387 PRK10416 signal recognition pa 95.5 0.15 3.3E-06 53.3 11.9 89 91-184 113-206 (318)
388 cd03216 ABC_Carb_Monos_I This 95.5 0.023 4.9E-07 53.4 5.2 110 92-211 26-144 (163)
389 PRK12724 flagellar biosynthesi 95.5 0.053 1.1E-06 57.9 8.4 83 92-182 223-307 (432)
390 cd01135 V_A-ATPase_B V/A-type 95.5 0.048 1E-06 54.8 7.7 96 91-186 68-178 (276)
391 TIGR00764 lon_rel lon-related 95.4 0.044 9.5E-07 62.8 8.4 75 70-150 18-92 (608)
392 KOG3928 Mitochondrial ribosome 95.4 0.34 7.3E-06 50.7 13.8 58 218-275 403-460 (461)
393 PRK05201 hslU ATP-dependent pr 95.4 0.045 9.8E-07 58.2 7.7 48 69-116 14-74 (443)
394 PF08433 KTI12: Chromatin asso 95.4 0.033 7.1E-07 56.7 6.6 25 93-117 2-26 (270)
395 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.4 0.045 9.7E-07 50.1 6.9 100 91-212 25-130 (144)
396 PRK05439 pantothenate kinase; 95.4 0.17 3.6E-06 52.4 11.6 27 90-116 84-110 (311)
397 TIGR03498 FliI_clade3 flagella 95.4 0.069 1.5E-06 57.6 9.2 92 91-186 139-242 (418)
398 TIGR00554 panK_bact pantothena 95.4 0.1 2.2E-06 53.5 10.0 26 91-116 61-86 (290)
399 cd02025 PanK Pantothenate kina 95.4 0.069 1.5E-06 52.8 8.6 23 94-116 1-23 (220)
400 cd03230 ABC_DR_subfamily_A Thi 95.4 0.026 5.5E-07 53.7 5.4 115 92-213 26-159 (173)
401 COG0003 ArsA Predicted ATPase 95.4 0.026 5.6E-07 58.6 5.6 49 92-143 2-50 (322)
402 PRK06762 hypothetical protein; 95.4 0.015 3.2E-07 54.9 3.6 25 92-116 2-26 (166)
403 PRK06002 fliI flagellum-specif 95.4 0.041 8.9E-07 59.5 7.3 90 92-186 165-266 (450)
404 cd02027 APSK Adenosine 5'-phos 95.4 0.046 9.9E-07 50.4 6.8 23 94-116 1-23 (149)
405 PRK03839 putative kinase; Prov 95.3 0.015 3.2E-07 55.8 3.5 23 94-116 2-24 (180)
406 PRK06217 hypothetical protein; 95.3 0.031 6.7E-07 53.7 5.7 24 93-116 2-25 (183)
407 PF12775 AAA_7: P-loop contain 95.3 0.021 4.5E-07 58.4 4.6 58 79-141 22-79 (272)
408 cd01132 F1_ATPase_alpha F1 ATP 95.3 0.08 1.7E-06 53.3 8.6 91 91-186 68-173 (274)
409 PRK08972 fliI flagellum-specif 95.3 0.03 6.5E-07 60.2 5.9 91 91-186 161-264 (444)
410 PF07724 AAA_2: AAA domain (Cd 95.3 0.015 3.3E-07 54.7 3.4 42 92-136 3-45 (171)
411 TIGR01360 aden_kin_iso1 adenyl 95.2 0.016 3.5E-07 56.0 3.6 26 91-116 2-27 (188)
412 PF00560 LRR_1: Leucine Rich R 95.2 0.0082 1.8E-07 34.7 0.9 16 475-491 2-17 (22)
413 COG0563 Adk Adenylate kinase a 95.2 0.03 6.5E-07 53.1 5.2 23 94-116 2-24 (178)
414 PRK14527 adenylate kinase; Pro 95.2 0.036 7.8E-07 53.6 5.8 26 91-116 5-30 (191)
415 KOG0735 AAA+-type ATPase [Post 95.2 0.22 4.8E-06 55.6 12.0 148 92-267 701-872 (952)
416 COG1126 GlnQ ABC-type polar am 95.2 0.093 2E-06 50.0 8.1 118 92-213 28-200 (240)
417 cd03229 ABC_Class3 This class 95.2 0.039 8.4E-07 52.7 5.9 25 92-116 26-50 (178)
418 PRK08927 fliI flagellum-specif 95.2 0.059 1.3E-06 58.2 7.7 91 91-186 157-260 (442)
419 cd02028 UMPK_like Uridine mono 95.2 0.042 9E-07 52.4 6.0 23 94-116 1-23 (179)
420 COG3640 CooC CO dehydrogenase 95.1 0.035 7.7E-07 53.4 5.3 42 94-137 2-43 (255)
421 PTZ00088 adenylate kinase 1; P 95.1 0.019 4.2E-07 56.8 3.8 23 94-116 8-30 (229)
422 PRK00625 shikimate kinase; Pro 95.1 0.018 4E-07 54.3 3.4 23 94-116 2-24 (173)
423 PF13245 AAA_19: Part of AAA d 95.1 0.05 1.1E-06 43.3 5.4 25 92-116 10-34 (76)
424 COG3598 RepA RecA-family ATPas 95.1 0.1 2.3E-06 52.5 8.6 101 80-183 80-203 (402)
425 PF02374 ArsA_ATPase: Anion-tr 95.1 0.021 4.6E-07 59.4 4.2 47 92-141 1-47 (305)
426 cd02029 PRK_like Phosphoribulo 95.1 0.069 1.5E-06 53.3 7.5 79 94-175 1-85 (277)
427 PRK04040 adenylate kinase; Pro 95.1 0.019 4.2E-07 55.1 3.6 25 92-116 2-26 (188)
428 TIGR00708 cobA cob(I)alamin ad 95.1 0.096 2.1E-06 48.8 8.0 115 92-210 5-141 (173)
429 cd01122 GP4d_helicase GP4d_hel 95.1 0.15 3.1E-06 52.6 10.3 52 92-147 30-81 (271)
430 PF01078 Mg_chelatase: Magnesi 95.1 0.04 8.6E-07 52.8 5.4 44 70-116 3-46 (206)
431 cd01136 ATPase_flagellum-secre 95.0 0.081 1.8E-06 55.0 8.2 91 91-186 68-171 (326)
432 KOG0726 26S proteasome regulat 95.0 0.19 4.1E-06 49.8 10.0 49 72-123 187-247 (440)
433 PRK09099 type III secretion sy 95.0 0.071 1.5E-06 57.9 7.9 92 91-186 162-265 (441)
434 PRK08149 ATP synthase SpaL; Va 95.0 0.089 1.9E-06 56.8 8.5 91 91-186 150-253 (428)
435 PRK00131 aroK shikimate kinase 95.0 0.022 4.8E-07 54.2 3.7 25 92-116 4-28 (175)
436 PRK05917 DNA polymerase III su 95.0 0.55 1.2E-05 48.0 13.7 39 78-116 5-43 (290)
437 PRK14721 flhF flagellar biosyn 94.9 0.14 2.9E-06 55.4 9.8 60 92-152 191-251 (420)
438 PRK09280 F0F1 ATP synthase sub 94.9 0.14 3E-06 55.7 9.8 94 91-186 143-250 (463)
439 PRK05922 type III secretion sy 94.9 0.059 1.3E-06 58.1 7.0 91 91-186 156-259 (434)
440 PF00625 Guanylate_kin: Guanyl 94.9 0.035 7.5E-07 53.3 4.7 36 92-130 2-37 (183)
441 PRK12597 F0F1 ATP synthase sub 94.9 0.067 1.4E-06 58.3 7.3 94 91-186 142-249 (461)
442 COG2274 SunT ABC-type bacterio 94.9 0.18 3.8E-06 58.6 11.0 26 91-116 498-523 (709)
443 TIGR01359 UMP_CMP_kin_fam UMP- 94.8 0.019 4.2E-07 55.1 2.9 23 94-116 1-23 (183)
444 COG4618 ArpD ABC-type protease 94.8 0.05 1.1E-06 58.3 6.0 24 93-116 363-386 (580)
445 COG3854 SpoIIIAA ncharacterize 94.8 0.093 2E-06 50.2 7.1 118 82-207 128-251 (308)
446 KOG0738 AAA+-type ATPase [Post 94.8 0.27 5.8E-06 51.0 10.8 24 93-116 246-269 (491)
447 PRK10875 recD exonuclease V su 94.8 0.086 1.9E-06 60.1 8.3 114 92-207 167-300 (615)
448 PF02456 Adeno_IVa2: Adenoviru 94.8 0.41 9E-06 48.1 11.8 170 92-275 87-298 (369)
449 PRK05986 cob(I)alamin adenolsy 94.8 0.1 2.2E-06 49.5 7.3 115 92-210 22-159 (191)
450 PRK06995 flhF flagellar biosyn 94.8 0.11 2.4E-06 57.0 8.8 60 92-152 256-316 (484)
451 PRK00279 adk adenylate kinase; 94.8 0.1 2.3E-06 51.5 8.0 23 94-116 2-24 (215)
452 PF08298 AAA_PrkA: PrkA AAA do 94.8 0.046 1E-06 56.5 5.5 47 70-116 61-112 (358)
453 TIGR01650 PD_CobS cobaltochela 94.8 0.073 1.6E-06 55.0 7.0 61 69-138 44-104 (327)
454 COG0541 Ffh Signal recognition 94.8 0.28 6.1E-06 51.9 11.2 102 78-182 78-190 (451)
455 KOG3347 Predicted nucleotide k 94.8 0.05 1.1E-06 48.2 4.8 25 92-116 7-31 (176)
456 PRK13947 shikimate kinase; Pro 94.8 0.027 5.9E-07 53.4 3.6 23 94-116 3-25 (171)
457 COG0488 Uup ATPase components 94.8 0.08 1.7E-06 59.2 7.7 132 92-224 348-510 (530)
458 cd00227 CPT Chloramphenicol (C 94.7 0.03 6.5E-07 53.3 3.9 24 93-116 3-26 (175)
459 PRK07594 type III secretion sy 94.7 0.1 2.3E-06 56.4 8.3 91 91-186 154-257 (433)
460 PF13306 LRR_5: Leucine rich r 94.7 0.095 2.1E-06 46.8 7.0 104 444-554 7-112 (129)
461 PLN02348 phosphoribulokinase 94.7 0.22 4.7E-06 52.8 10.3 38 79-116 36-73 (395)
462 cd00984 DnaB_C DnaB helicase C 94.7 0.2 4.3E-06 50.6 10.0 51 92-146 13-63 (242)
463 cd02024 NRK1 Nicotinamide ribo 94.7 0.023 4.9E-07 54.2 2.8 23 94-116 1-23 (187)
464 PRK03846 adenylylsulfate kinas 94.7 0.044 9.6E-07 53.3 4.9 26 91-116 23-48 (198)
465 PRK09302 circadian clock prote 94.7 0.2 4.4E-06 56.7 10.9 88 91-184 272-373 (509)
466 PRK09302 circadian clock prote 94.7 0.16 3.5E-06 57.5 10.1 96 85-185 23-141 (509)
467 PF00560 LRR_1: Leucine Rich R 94.6 0.018 3.9E-07 33.2 1.3 21 498-518 1-21 (22)
468 cd02023 UMPK Uridine monophosp 94.6 0.024 5.1E-07 55.3 2.8 23 94-116 1-23 (198)
469 cd02021 GntK Gluconate kinase 94.6 0.025 5.4E-07 52.3 2.8 23 94-116 1-23 (150)
470 COG4240 Predicted kinase [Gene 94.6 0.19 4.1E-06 48.0 8.4 85 90-176 48-135 (300)
471 TIGR01069 mutS2 MutS2 family p 94.6 0.015 3.2E-07 68.3 1.6 25 91-115 321-345 (771)
472 CHL00206 ycf2 Ycf2; Provisiona 94.6 0.35 7.6E-06 60.6 12.9 25 92-116 1630-1654(2281)
473 PF05970 PIF1: PIF1-like helic 94.6 0.07 1.5E-06 57.4 6.6 38 78-116 9-46 (364)
474 cd00267 ABC_ATPase ABC (ATP-bi 94.6 0.071 1.5E-06 49.7 5.9 111 92-213 25-144 (157)
475 COG1121 ZnuC ABC-type Mn/Zn tr 94.6 0.18 3.8E-06 50.1 8.7 119 93-211 31-201 (254)
476 cd00071 GMPK Guanosine monopho 94.5 0.03 6.5E-07 50.7 3.1 23 94-116 1-23 (137)
477 TIGR02322 phosphon_PhnN phosph 94.5 0.031 6.6E-07 53.5 3.4 24 93-116 2-25 (179)
478 COG0529 CysC Adenylylsulfate k 94.5 0.05 1.1E-06 49.9 4.4 26 91-116 22-47 (197)
479 PHA02244 ATPase-like protein 94.5 0.081 1.8E-06 55.4 6.5 45 69-116 95-143 (383)
480 KOG0651 26S proteasome regulat 94.5 0.089 1.9E-06 52.7 6.4 26 91-116 165-190 (388)
481 PRK13949 shikimate kinase; Pro 94.5 0.037 8E-07 52.2 3.7 24 93-116 2-25 (169)
482 TIGR02030 BchI-ChlI magnesium 94.5 0.057 1.2E-06 56.8 5.5 46 70-116 4-49 (337)
483 PF03266 NTPase_1: NTPase; In 94.5 0.031 6.7E-07 52.5 3.1 22 95-116 2-23 (168)
484 PRK13768 GTPase; Provisional 94.5 0.051 1.1E-06 55.1 4.9 37 92-131 2-38 (253)
485 PRK14723 flhF flagellar biosyn 94.4 0.15 3.3E-06 58.9 9.1 88 92-184 185-273 (767)
486 COG5635 Predicted NTPase (NACH 94.4 0.15 3.3E-06 61.2 9.6 195 92-292 222-448 (824)
487 PRK07721 fliI flagellum-specif 94.4 0.14 3E-06 55.9 8.4 92 91-186 157-260 (438)
488 TIGR01039 atpD ATP synthase, F 94.4 0.12 2.5E-06 56.1 7.7 94 91-186 142-249 (461)
489 PRK13407 bchI magnesium chelat 94.4 0.06 1.3E-06 56.4 5.3 46 70-116 8-53 (334)
490 PRK07196 fliI flagellum-specif 94.4 0.13 2.9E-06 55.6 8.0 91 91-186 154-257 (434)
491 COG1936 Predicted nucleotide k 94.3 0.034 7.4E-07 50.9 3.0 20 94-113 2-21 (180)
492 cd03281 ABC_MSH5_euk MutS5 hom 94.3 0.039 8.4E-07 54.3 3.7 24 92-115 29-52 (213)
493 COG1117 PstB ABC-type phosphat 94.3 0.14 3.1E-06 48.5 7.1 43 71-116 15-57 (253)
494 PF03205 MobB: Molybdopterin g 94.3 0.058 1.2E-06 48.9 4.5 39 93-133 1-39 (140)
495 PRK10751 molybdopterin-guanine 94.3 0.044 9.6E-07 51.3 3.8 26 91-116 5-30 (173)
496 COG1124 DppF ABC-type dipeptid 94.3 0.053 1.1E-06 52.6 4.3 25 92-116 33-57 (252)
497 KOG0927 Predicted transporter 94.3 0.086 1.9E-06 56.9 6.3 33 92-124 101-133 (614)
498 cd02020 CMPK Cytidine monophos 94.3 0.032 7E-07 51.3 2.9 23 94-116 1-23 (147)
499 PF02367 UPF0079: Uncharacteri 94.3 0.073 1.6E-06 46.6 4.8 25 92-116 15-39 (123)
500 cd01130 VirB11-like_ATPase Typ 94.3 0.05 1.1E-06 52.4 4.3 93 93-192 26-118 (186)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=9.7e-90 Score=788.47 Aligned_cols=769 Identities=42% Similarity=0.727 Sum_probs=642.7
Q ss_pred chhhcccccCCcCCCChhhHhHHHHHHHHHHHHHHHHHhcCCccccccC-CCCcccccccCCCCCcc-cchhHHHHHHHH
Q 003513 7 SQEIDKLCLGGYCSRNCKSSYKFGRKVVKRLRDVKALKGEGVFEEVAAP-DPELISAADERPTEPTV-VGLQSQLEQVWR 84 (814)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-vGr~~~~~~l~~ 84 (814)
.+..|+-|+..+|++....-|.+++++.+.+++++.+..++.+...... .+ +.....+|..+.. ||.+..++++++
T Consensus 95 ~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~--~~~~e~~~~~~~~~VG~e~~~~kl~~ 172 (889)
T KOG4658|consen 95 SVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDP--REKVETRPIQSESDVGLETMLEKLWN 172 (889)
T ss_pred HHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccc--hhhcccCCCCccccccHHHHHHHHHH
Confidence 3567888999999988888899999999999999999988877766542 22 2333333433333 999999999999
Q ss_pred HHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHH
Q 003513 85 CLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKA 164 (814)
Q Consensus 85 ~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 164 (814)
.|.++ +..+++|+||||+||||||++++++..+++.+|+.++||.||+.++...++++|+..++.....+.....++.+
T Consensus 173 ~L~~d-~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~ 251 (889)
T KOG4658|consen 173 RLMED-DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELA 251 (889)
T ss_pred HhccC-CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHH
Confidence 99988 44999999999999999999999999548999999999999999999999999999999877666666678999
Q ss_pred HHHHHHhccCceEEEEccccCccccccccccCCC---CcEEEEecCCcccccc-CCccceEEeccCCHHhHHHHHHHHhc
Q 003513 165 HDIFKTLSKKKFALLLDDLWERVDLKKIGVPLPK---NSAVVFTTRFVDVCGG-MEARRMFKVACLSDEDAWELFREKVG 240 (814)
Q Consensus 165 ~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~~---~~~iiiTtR~~~~~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~ 240 (814)
..|.+.|+++|+|||+||||+..+|+.++.|++. ||+|++|||++.|+.. ++....++++.|+.+|||.||.+.++
T Consensus 252 ~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~ 331 (889)
T KOG4658|consen 252 SKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVG 331 (889)
T ss_pred HHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhc
Confidence 9999999999999999999999999999999988 6999999999999988 88888999999999999999999999
Q ss_pred cccccCCCChHHHHHHHHHHcCCChHHHHHHHHHhccCCCHHHHHHHHHHHhhh-hcccCCCchhhhhhhhhhccCCCch
Q 003513 241 EETIESHHSLPELAQTVAKECRGLPLALITIGRAMAYKKTPEEWRYAIEVLRRS-ASEFAGLGKEVYPLLKFSYDCLPND 319 (814)
Q Consensus 241 ~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~~l~~~-~~~~~~~~~~i~~~l~~sy~~L~~~ 319 (814)
.......+.++++|++|+++|+|+|||++++|+.|+.+++..+|+++.+.+.+. ..+.+++.+.++++|++||+.|++
T Consensus 332 ~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~- 410 (889)
T KOG4658|consen 332 PNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE- 410 (889)
T ss_pred cccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH-
Confidence 886566667999999999999999999999999999999999999999999887 666677788999999999999995
Q ss_pred hhHHHHhhhcCCCCCCccChHHHHHHHHhcCCCCCc--ccccchhhHHHHHHHHHhccccccc----CcceeehHHHHHH
Q 003513 320 AIRSCFLYCCLYPEDFSIDKRDLIDCWMCEGFLEGD--KFGTQNQGYYIVGTLVHACLLEEVE----DDQVKMHDVVRDM 393 (814)
Q Consensus 320 ~~k~~fl~~~~fp~~~~i~~~~li~~w~~~g~~~~~--~~~~~~~~~~~l~~L~~~~ll~~~~----~~~~~mH~lv~~~ 393 (814)
++|.||+|||+||+||.|+++.++.+|+|+||+.+. +..+++.|+.++.+|++++|+.... ..+|+|||+||+|
T Consensus 411 ~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~ 490 (889)
T KOG4658|consen 411 ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREM 490 (889)
T ss_pred HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHH
Confidence 999999999999999999999999999999999885 7889999999999999999999863 3789999999999
Q ss_pred HHHHHhhhccccccEEEEcCCCcccCCCCccCcccEEEEEcccCCCcCCCCCCCCCcccEEEcccCC--Cccccchhhcc
Q 003513 394 ALWITCEIEKEKEGFLVYAGSGLTKAPADVRGWEMVRRLSLMKNSIENLPTVPTCPHLLTLFLNRNP--LRTITGGFFQS 471 (814)
Q Consensus 394 a~~i~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~ 471 (814)
|.+++++.+.++++.++.++.+.... +....|...|++++.+|.+..++.-..+++|++|-+.+|. +..++..||..
T Consensus 491 al~ias~~~~~~e~~iv~~~~~~~~~-~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~ 569 (889)
T KOG4658|consen 491 ALWIASDFGKQEENQIVSDGVGLSEI-PQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRS 569 (889)
T ss_pred HHHHhccccccccceEEECCcCcccc-ccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhh
Confidence 99999988887787777777666666 5567789999999999999999988899999999999996 78888889999
Q ss_pred CCcccEEEccCCccccccCcccccccccCEEEecCCCCcccChhhhcCCCCceeccccccccceeCccccCCCcccceee
Q 003513 472 MSCLTVLKMSDNIMLRQLPMGISKLVSLQLLDISNTSVTELPEDLKALVNLKCLNLVWAKELVVVPQQLLSNFSRLRVLR 551 (814)
Q Consensus 472 l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~ 551 (814)
|+.|++|||++|..+.++|++|+.|.+||||+++++.++.+|.++++|.+|.+|++..+..+..+| +....|++|++|.
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLRVLR 648 (889)
T ss_pred CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc-chhhhcccccEEE
Confidence 999999999999999999999999999999999999999999999999999999999988766664 4466799999999
Q ss_pred ccccCcccchhhhchHHHHcCCCCccEEEEEecChhhHHHHhccccccccceeeeecccCCCCcccccCccCCCCCcEEE
Q 003513 552 MFATGFLLSSWHENVAEELLGLKYLEVLEISFRSFEAYQTFLSSQKLRSCTHALLLHRFDREESIDVADLADLEQLNTLD 631 (814)
Q Consensus 552 l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 631 (814)
+..... ........++..+++|+.+.+...+...+..+.....+.++.+.+.+.++.. .....++..+.+|+.|.
T Consensus 649 l~~s~~---~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~--~~~~~~~~~l~~L~~L~ 723 (889)
T KOG4658|consen 649 LPRSAL---SNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSK--RTLISSLGSLGNLEELS 723 (889)
T ss_pred eecccc---ccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccccc--ceeecccccccCcceEE
Confidence 987652 2355677888889999988887666544444444444455555555544221 22235678899999999
Q ss_pred eccCCCcceEEecccccccccCCcc-ccCCccEEeeecCcccccccccccCCCCcEEEEecChhhHHHhccCCCCCcCCc
Q 003513 632 FYGCGCIKGLKIDCNDMVQKSRQPY-VFRSLEKVTVRFCRNLRHLTFLVFAPNLKSISVRYCDDMEEIISAGEFDDIPEM 710 (814)
Q Consensus 632 l~~~~~l~~l~~~~~~~~~~~~~~~-~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 710 (814)
+.+|...+.. ..|... .... .|+++.++.+.+|...+.+.|....|+|+.|.+..|..+++++....... .+
T Consensus 724 i~~~~~~e~~-~~~~~~----~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~--~l 796 (889)
T KOG4658|consen 724 ILDCGISEIV-IEWEES----LIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALL--EL 796 (889)
T ss_pred EEcCCCchhh-cccccc----cchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhh--hc
Confidence 9999876532 233221 1111 26788899999999999999988999999999999999988865322111 01
Q ss_pred cccCCCCCCCccee-ccccccccccccCCCCCCCCccEEEEeCCCCCCCCCCCCCC-CCC--cceEEEechhhhccCccc
Q 003513 711 TGIINSPFAKLQRL-ELWGLVRLKSIYWKPLPLPRLKVLQVWGCDSLKKLPLDSNS-ANG--RRILIRGVEDWWRRLQWE 786 (814)
Q Consensus 711 ~~~~~~~~~~L~~L-~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~-~~l--~~~~i~~~~~~~~~l~~~ 786 (814)
. .....|+++..+ .+.+.+.+..+.+....++.|+.+.+..||++.++|..... ... ..+....+..|.+++.|.
T Consensus 797 ~-~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~ 875 (889)
T KOG4658|consen 797 K-ELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWE 875 (889)
T ss_pred c-cEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCccceeeEEeh
Confidence 0 124567788888 58888888888777777888999999999999999986544 111 223333444567899999
Q ss_pred chhhhccc
Q 003513 787 DEATQNAF 794 (814)
Q Consensus 787 ~~~~~~~~ 794 (814)
++..+..+
T Consensus 876 ~~~~~~~~ 883 (889)
T KOG4658|consen 876 DELTKLRF 883 (889)
T ss_pred hhhhhhhc
Confidence 98777654
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.1e-71 Score=677.04 Aligned_cols=706 Identities=19% Similarity=0.260 Sum_probs=493.5
Q ss_pred CCCCCCchhhcccccCCcCCCChhh-HhHHHHHHHHHHHHHHHHHhcC--Cc-------cccccCCCCcccccccCCCCC
Q 003513 1 MGRDGGSQEIDKLCLGGYCSRNCKS-SYKFGRKVVKRLRDVKALKGEG--VF-------EEVAAPDPELISAADERPTEP 70 (814)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~ 70 (814)
|+|||+|||+|+|+|+.+|.++... ..+..++|++++.+++.+.|.. .. ..+...... .-...+.....
T Consensus 106 y~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~-~l~~~~~~~~~ 184 (1153)
T PLN03210 106 YGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLG-KLNLTPSNDFE 184 (1153)
T ss_pred ecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHH-hhccccCcccc
Confidence 9999999999999999998665432 2367889999999999998853 11 111111110 00111222346
Q ss_pred cccchhHHHHHHHHHHhc-CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEE---CCc-----------c
Q 003513 71 TVVGLQSQLEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVV---SKD-----------L 135 (814)
Q Consensus 71 ~~vGr~~~~~~l~~~L~~-~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~---~~~-----------~ 135 (814)
.+|||+++++++..+|.. .+++++|+|+||||+||||||+++|++. ...|++.+|+.. +.. .
T Consensus 185 ~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~ 261 (1153)
T PLN03210 185 DFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDDY 261 (1153)
T ss_pred cccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhccccccccc
Confidence 799999999999998854 3578999999999999999999999988 778998888752 111 0
Q ss_pred C-HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCcccccccccc---CCCCcEEEEecCCccc
Q 003513 136 Q-LEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWERVDLKKIGVP---LPKNSAVVFTTRFVDV 211 (814)
Q Consensus 136 ~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~---~~~~~~iiiTtR~~~~ 211 (814)
. ...+++.++..+....+ ..... ...+++.++++|+||||||||+..+++.+... ++.|++||||||++.+
T Consensus 262 ~~~~~l~~~~l~~il~~~~-~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~v 336 (1153)
T PLN03210 262 NMKLHLQRAFLSEILDKKD-IKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHF 336 (1153)
T ss_pred chhHHHHHHHHHHHhCCCC-cccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHH
Confidence 1 12344555554422111 01111 24577889999999999999999888777443 3569999999999999
Q ss_pred cccCCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHHHHhccCCCHHHHHHHHHHH
Q 003513 212 CGGMEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIGRAMAYKKTPEEWRYAIEVL 291 (814)
Q Consensus 212 ~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~~l 291 (814)
+..++..++|+++.|+++|||+||.++||... .+++++.+++++|+++|+|+||||+++|++|++ ++..+|+.+++++
T Consensus 337 l~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L 414 (1153)
T PLN03210 337 LRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRL 414 (1153)
T ss_pred HHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHH
Confidence 88777788999999999999999999999765 345568899999999999999999999999987 6889999999998
Q ss_pred hhhhcccCCCchhhhhhhhhhccCCCchhhHHHHhhhcCCCCCCccChHHHHHHHHhcCCCCCcccccchhhHHHHHHHH
Q 003513 292 RRSASEFAGLGKEVYPLLKFSYDCLPNDAIRSCFLYCCLYPEDFSIDKRDLIDCWMCEGFLEGDKFGTQNQGYYIVGTLV 371 (814)
Q Consensus 292 ~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~~fl~~~~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~l~~L~ 371 (814)
+... +.+|..+|++||+.|+++..|.||+++|+|+.+..++ .+..|++.+.+.. +..++.|+
T Consensus 415 ~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~---------~~~l~~L~ 476 (1153)
T PLN03210 415 RNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV---------NIGLKNLV 476 (1153)
T ss_pred HhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc---------hhChHHHH
Confidence 7643 3489999999999998745899999999999887654 3566777654432 22389999
Q ss_pred HhcccccccCcceeehHHHHHHHHHHHhhhc--cccccEEEEcC----------------------CCcc----------
Q 003513 372 HACLLEEVEDDQVKMHDVVRDMALWITCEIE--KEKEGFLVYAG----------------------SGLT---------- 417 (814)
Q Consensus 372 ~~~ll~~~~~~~~~mH~lv~~~a~~i~~~~~--~~~~~~l~~~~----------------------~~~~---------- 417 (814)
++||++.. .+++.|||++|+||+++++++. +.++.+++... ..+.
T Consensus 477 ~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~ 555 (1153)
T PLN03210 477 DKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFK 555 (1153)
T ss_pred hcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHh
Confidence 99999876 4689999999999999997653 12222332110 0000
Q ss_pred -----------------------cCCCCccCc-ccEEEEEcccCCCcCCCCCCCCCcccEEEcccCCCccccchhhccCC
Q 003513 418 -----------------------KAPADVRGW-EMVRRLSLMKNSIENLPTVPTCPHLLTLFLNRNPLRTITGGFFQSMS 473 (814)
Q Consensus 418 -----------------------~~p~~~~~~-~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 473 (814)
.+|..+..+ .+++.|.+.++.+..+|....+.+|+.|++.++.+..++.. +..++
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l~ 634 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSLT 634 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-cccCC
Confidence 111222222 24666666666666666555677888888888887777665 57889
Q ss_pred cccEEEccCCccccccCcccccccccCEEEecCC-CCcccChhhhcCCCCceeccccccccceeCccccCCCcccceeec
Q 003513 474 CLTVLKMSDNIMLRQLPMGISKLVSLQLLDISNT-SVTELPEDLKALVNLKCLNLVWAKELVVVPQQLLSNFSRLRVLRM 552 (814)
Q Consensus 474 ~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l 552 (814)
+|++|+|+++..++.+| .++.+++|++|++++| .+.++|..++++++|+.|++++|..++.+|.. + ++++|+.|++
T Consensus 635 ~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~L 711 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNL 711 (1153)
T ss_pred CCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeC
Confidence 99999999887778888 5888899999999988 67789999999999999999999888888875 3 7889999999
Q ss_pred cccCcccchhhhchHHHHcCCCCccEEEEEecChhhHHHHhccccccccceeeeecccCCCC------cccccCccCCCC
Q 003513 553 FATGFLLSSWHENVAEELLGLKYLEVLEISFRSFEAYQTFLSSQKLRSCTHALLLHRFDREE------SIDVADLADLEQ 626 (814)
Q Consensus 553 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~------~~~~~~l~~l~~ 626 (814)
++|... ..++. ...+|+.|+++.|.+..++.... ..+|..|.+..+.... .........+++
T Consensus 712 sgc~~L-----~~~p~---~~~nL~~L~L~~n~i~~lP~~~~----l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 712 SGCSRL-----KSFPD---ISTNISWLDLDETAIEEFPSNLR----LENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred CCCCCc-----ccccc---ccCCcCeeecCCCcccccccccc----ccccccccccccchhhccccccccchhhhhcccc
Confidence 888652 22221 23577888888777655443221 1234444443322100 000000111345
Q ss_pred CcEEEeccCCCcceEEecccccccccCCccccCCccEEeeecCcccccccccccCCCCcEEEEecChhhHHHhccCC---
Q 003513 627 LNTLDFYGCGCIKGLKIDCNDMVQKSRQPYVFRSLEKVTVRFCRNLRHLTFLVFAPNLKSISVRYCDDMEEIISAGE--- 703 (814)
Q Consensus 627 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~--- 703 (814)
|+.|++++|+.+..++ .....+++|+.|+|++|..++.+|....+++|+.|++++|..++.++....
T Consensus 780 L~~L~Ls~n~~l~~lP----------~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~ 849 (1153)
T PLN03210 780 LTRLFLSDIPSLVELP----------SSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNIS 849 (1153)
T ss_pred chheeCCCCCCccccC----------hhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccC
Confidence 6666666655444321 122345666666666666666555444556666666666655544322100
Q ss_pred -----CCCcCCccccCCCCCCCcceeccccccccccccCCCCCCCCccEEEEeCCCCCCCCCCCC
Q 003513 704 -----FDDIPEMTGIINSPFAKLQRLELWGLVRLKSIYWKPLPLPRLKVLQVWGCDSLKKLPLDS 763 (814)
Q Consensus 704 -----~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~ 763 (814)
.+.+..++ .....+++|+.|++.+|++++.++.....+++|+.|++++|++|+.++...
T Consensus 850 ~L~Ls~n~i~~iP-~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~ 913 (1153)
T PLN03210 850 DLNLSRTGIEEVP-WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNG 913 (1153)
T ss_pred EeECCCCCCccCh-HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCC
Confidence 00011111 234568899999999999999988888888999999999999998877644
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.8e-43 Score=367.43 Aligned_cols=279 Identities=35% Similarity=0.651 Sum_probs=229.0
Q ss_pred hhHHHHHHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCC
Q 003513 75 LQSQLEQVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCND 153 (814)
Q Consensus 75 r~~~~~~l~~~L~~~-~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 153 (814)
||.++++|.+.|.+. ++.++|+|+||||+||||||++++++. ....+|+.++|+.++...+..+++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 799999999999882 489999999999999999999999995 348999999999999999999999999999988754
Q ss_pred CC-CCCCHHHHHHHHHHHhccCceEEEEccccCccccccccccCCC---CcEEEEecCCccccccCCc-cceEEeccCCH
Q 003513 154 SW-KNKSLEEKAHDIFKTLSKKKFALLLDDLWERVDLKKIGVPLPK---NSAVVFTTRFVDVCGGMEA-RRMFKVACLSD 228 (814)
Q Consensus 154 ~~-~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~~---~~~iiiTtR~~~~~~~~~~-~~~~~l~~L~~ 228 (814)
.. ...+.++....+.+.++++++||||||||+...++.+...++. |++||||||+..++..+.. ...+++++|+.
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 33 5667888999999999999999999999999988777655443 8999999999988776554 67899999999
Q ss_pred HhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHHHHhccCCCHHHHHHHHHHHhhhhcccCCCchhhhhh
Q 003513 229 EDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIGRAMAYKKTPEEWRYAIEVLRRSASEFAGLGKEVYPL 308 (814)
Q Consensus 229 ~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~ 308 (814)
+||++||.+.++.......+..++.+++|++.|+|+||||+++|++++.+.+..+|..+++.+.....+..+....++.+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999865423345668899999999999999999999999665577899999998888765544456789999
Q ss_pred hhhhccCCCchhhHHHHhhhcCCCCCCccChHHHHHHHHhcCCCCCc
Q 003513 309 LKFSYDCLPNDAIRSCFLYCCLYPEDFSIDKRDLIDCWMCEGFLEGD 355 (814)
Q Consensus 309 l~~sy~~L~~~~~k~~fl~~~~fp~~~~i~~~~li~~w~~~g~~~~~ 355 (814)
+.+||+.|++ ++|.||++||+||+++.|+++.++.+|+++|++...
T Consensus 240 l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 240 LELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999999 899999999999999999999999999999998764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=7.4e-23 Score=250.60 Aligned_cols=353 Identities=16% Similarity=0.156 Sum_probs=236.2
Q ss_pred ccEEEEcCCCcc-cCCCCcc-CcccEEEEEcccCCCcCCCCCCCCCcccEEEcccCCCccccchhhccCCcccEEEccCC
Q 003513 406 EGFLVYAGSGLT-KAPADVR-GWEMVRRLSLMKNSIENLPTVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDN 483 (814)
Q Consensus 406 ~~~l~~~~~~~~-~~p~~~~-~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 483 (814)
-..+...++.+. .+|..+. .+.+|++|++++|.+........+++|++|++++|.+....+..++++++|++|+|++|
T Consensus 95 L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n 174 (968)
T PLN00113 95 IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN 174 (968)
T ss_pred CCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccC
Confidence 355666666665 5665544 77888888888888775444567888899999888877655555888899999999888
Q ss_pred ccccccCcccccccccCEEEecCCCCc-ccChhhhcCCCCceeccccccccceeCccccCCCcccceeeccccCcccchh
Q 003513 484 IMLRQLPMGISKLVSLQLLDISNTSVT-ELPEDLKALVNLKCLNLVWAKELVVVPQQLLSNFSRLRVLRMFATGFLLSSW 562 (814)
Q Consensus 484 ~~~~~lp~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~ 562 (814)
.....+|..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+
T Consensus 175 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l----- 248 (968)
T PLN00113 175 VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNL----- 248 (968)
T ss_pred cccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCcee-----
Confidence 555678888888999999999888776 67888888999999999888776677766 78888999999888876
Q ss_pred hhchHHHHcCCCCccEEEEEecChhhHHHHhccccccccceeeeecccCCCCcccccCccCCCCCcEEEeccCCCcceEE
Q 003513 563 HENVAEELLGLKYLEVLEISFRSFEAYQTFLSSQKLRSCTHALLLHRFDREESIDVADLADLEQLNTLDFYGCGCIKGLK 642 (814)
Q Consensus 563 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~ 642 (814)
.+..+..+..+++|+.|+++.|.+.+.. ........+|+.|+++++.-...++ ..+..+++|+.|++++|.....+
T Consensus 249 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~n~~~~~~- 324 (968)
T PLN00113 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPI--PPSIFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTGKI- 324 (968)
T ss_pred ccccChhHhCCCCCCEEECcCCeeeccC--chhHhhccCcCEEECcCCeeccCCC-hhHcCCCCCcEEECCCCccCCcC-
Confidence 4567778888888888888887764311 1111223477888887765433333 45667788888888887643322
Q ss_pred ecccccccccCCccccCCccEEeeecCccccccc-ccccCCCCcEEEEecChhhHHHhcc----CCCC-------CcCCc
Q 003513 643 IDCNDMVQKSRQPYVFRSLEKVTVRFCRNLRHLT-FLVFAPNLKSISVRYCDDMEEIISA----GEFD-------DIPEM 710 (814)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~----~~~~-------~~~~~ 710 (814)
+ .....+++|+.|+|++|.....+| .+..+++|+.|++++|.....++.. .... .+...
T Consensus 325 ~---------~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~ 395 (968)
T PLN00113 325 P---------VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE 395 (968)
T ss_pred C---------hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEeccc
Confidence 1 122357778888888775443444 4566778888888775422111100 0000 00000
Q ss_pred cccCCCCCCCcceeccccccccccccCCCCCCCCccEEEEeCCCCCCCCCCCC-CCCCCcceEEEech
Q 003513 711 TGIINSPFAKLQRLELWGLVRLKSIYWKPLPLPRLKVLQVWGCDSLKKLPLDS-NSANGRRILIRGVE 777 (814)
Q Consensus 711 ~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~-~~~~l~~~~i~~~~ 777 (814)
.......+++|+.|.+.+|.--..+|.....+++|+.|++++|.--..+|... ...+++.+.+.+|.
T Consensus 396 ~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 396 IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463 (968)
T ss_pred CCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence 00223457788888888875444666666778888888888774322333221 22556666666554
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=2.2e-22 Score=246.51 Aligned_cols=345 Identities=18% Similarity=0.156 Sum_probs=184.7
Q ss_pred EEEEcCCCcc-cCCCCccCcccEEEEEcccCCCc-CCC-CCCCCCcccEEEcccCCCccccchhhccCCcccEEEccCCc
Q 003513 408 FLVYAGSGLT-KAPADVRGWEMVRRLSLMKNSIE-NLP-TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNI 484 (814)
Q Consensus 408 ~l~~~~~~~~-~~p~~~~~~~~l~~L~l~~~~~~-~l~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 484 (814)
.+...++.+. .+|..+.++.+|++|++++|.+. .+| .+.++++|++|++++|.+....+..++++++|++|+|++|.
T Consensus 144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223 (968)
T ss_pred EEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence 3444444443 34455666666666666666654 233 35566666666666666554444446666666666666664
Q ss_pred cccccCcccccccccCEEEecCCCCc-ccChhhhcCCCCceeccccccccceeCccccCCCcccceeeccccCcccchhh
Q 003513 485 MLRQLPMGISKLVSLQLLDISNTSVT-ELPEDLKALVNLKCLNLVWAKELVVVPQQLLSNFSRLRVLRMFATGFLLSSWH 563 (814)
Q Consensus 485 ~~~~lp~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~ 563 (814)
....+|..++.+++|++|++++|.+. .+|..++++++|+.|++++|.....+|.. +.++++|+.|++++|.+ .
T Consensus 224 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l-----~ 297 (968)
T PLN00113 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDNSL-----S 297 (968)
T ss_pred cCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEEECcCCee-----c
Confidence 34456666666666666666666555 55666666666666666666554455544 55666666666666655 3
Q ss_pred hchHHHHcCCCCccEEEEEecChhhHHHHhccccccccceeeeecccCCCCcccccCccCCCCCcEEEeccCCCcceEEe
Q 003513 564 ENVAEELLGLKYLEVLEISFRSFEAYQTFLSSQKLRSCTHALLLHRFDREESIDVADLADLEQLNTLDFYGCGCIKGLKI 643 (814)
Q Consensus 564 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~ 643 (814)
+..+..+..+++|+.|++++|.+.... .......++|+.|.++++.....++ ..+..+++|+.|++++|.....+ +
T Consensus 298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~Ls~n~l~~~~-p 373 (968)
T PLN00113 298 GEIPELVIQLQNLEILHLFSNNFTGKI--PVALTSLPRLQVLQLWSNKFSGEIP-KNLGKHNNLTVLDLSTNNLTGEI-P 373 (968)
T ss_pred cCCChhHcCCCCCcEEECCCCccCCcC--ChhHhcCCCCCEEECcCCCCcCcCC-hHHhCCCCCcEEECCCCeeEeeC-C
Confidence 445555666666666666666543211 0111123456666666655433333 34556667777777666422211 1
Q ss_pred ccccc---------------ccccCCccccCCccEEeeecCccccccc-ccccCCCCcEEEEecChhhHHHhccCCCCCc
Q 003513 644 DCNDM---------------VQKSRQPYVFRSLEKVTVRFCRNLRHLT-FLVFAPNLKSISVRYCDDMEEIISAGEFDDI 707 (814)
Q Consensus 644 ~~~~~---------------~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 707 (814)
.+... ...+.....+++|+.|++++|.....+| .+..+++|+.|+++++. +...+.
T Consensus 374 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~------- 445 (968)
T PLN00113 374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN-LQGRIN------- 445 (968)
T ss_pred hhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc-ccCccC-------
Confidence 11110 0011122334555555555553222222 23445555555555532 221111
Q ss_pred CCccccCCCCCCCcceeccccccccccccCCCCCCCCccEEEEeCCCCCCCCCCCCC-CCCCcceEEEec
Q 003513 708 PEMTGIINSPFAKLQRLELWGLVRLKSIYWKPLPLPRLKVLQVWGCDSLKKLPLDSN-SANGRRILIRGV 776 (814)
Q Consensus 708 ~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~-~~~l~~~~i~~~ 776 (814)
.....+++|+.|++.+|.-...+|... ..++|+.|++++|.--..+|.... ..+++.+.+++|
T Consensus 446 -----~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 509 (968)
T PLN00113 446 -----SRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN 509 (968)
T ss_pred -----hhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCC
Confidence 123457778888888776555555433 357788888887744334443222 245555665544
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=1.8e-23 Score=217.46 Aligned_cols=330 Identities=20% Similarity=0.238 Sum_probs=227.9
Q ss_pred ccEEEEcCCCcccCCCCccCcccEEEEEcccCCCcCCC-CCCCCCcccEEEcccCCC--ccccchhhccCCcccEEEccC
Q 003513 406 EGFLVYAGSGLTKAPADVRGWEMVRRLSLMKNSIENLP-TVPTCPHLLTLFLNRNPL--RTITGGFFQSMSCLTVLKMSD 482 (814)
Q Consensus 406 ~~~l~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~~--~~~~~~~~~~l~~L~~L~L~~ 482 (814)
-.|+.+...++..+|..++.+.+|++|++.+|++..+- .++.++.||.+++.+|.+ .++|++ +-.+..|.+||||.
T Consensus 34 ~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLSh 112 (1255)
T KOG0444|consen 34 MTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSH 112 (1255)
T ss_pred eeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecch
Confidence 47899999999999999999999999999999987765 578889999999999885 466777 44789999999999
Q ss_pred CccccccCcccccccccCEEEecCCCCcccChhh-hcCCCCceeccccccccceeCccccCCCcccceeeccccCcccch
Q 003513 483 NIMLRQLPMGISKLVSLQLLDISNTSVTELPEDL-KALVNLKCLNLVWAKELVVVPQQLLSNFSRLRVLRMFATGFLLSS 561 (814)
Q Consensus 483 ~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~ 561 (814)
| .+.+.|..+..-+++-.|+||+|+|.++|..+ -+|..|-.|||++|+ +..+|+. +.+|.+|++|.+++|.+
T Consensus 113 N-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ-~RRL~~LqtL~Ls~NPL---- 185 (1255)
T KOG0444|consen 113 N-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQ-IRRLSMLQTLKLSNNPL---- 185 (1255)
T ss_pred h-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHH-HHHHhhhhhhhcCCChh----
Confidence 9 88999999999999999999999999998754 688889999999885 5888887 78899999999998877
Q ss_pred hhhchHHHHcCCCCccEEEEEecChhhHHHHhccccccccceeeeecccCCCCcccccCccCCCCCcEEEeccCCCcceE
Q 003513 562 WHENVAEELLGLKYLEVLEISFRSFEAYQTFLSSQKLRSCTHALLLHRFDREESIDVADLADLEQLNTLDFYGCGCIKGL 641 (814)
Q Consensus 562 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l 641 (814)
...-...+-.+++|+.|.+++...+ ...+..++.-..+|..++++.+. +..++ ..+-++++|+.|+|++|...+ +
T Consensus 186 -~hfQLrQLPsmtsL~vLhms~TqRT-l~N~Ptsld~l~NL~dvDlS~N~-Lp~vP-ecly~l~~LrrLNLS~N~ite-L 260 (1255)
T KOG0444|consen 186 -NHFQLRQLPSMTSLSVLHMSNTQRT-LDNIPTSLDDLHNLRDVDLSENN-LPIVP-ECLYKLRNLRRLNLSGNKITE-L 260 (1255)
T ss_pred -hHHHHhcCccchhhhhhhcccccch-hhcCCCchhhhhhhhhccccccC-CCcch-HHHhhhhhhheeccCcCceee-e
Confidence 3444555566667777777765532 22233333333455555555433 33333 566677888888888876322 2
Q ss_pred EecccccccccCCccccCCccEEeeecCccccccc-ccccCCCCcEEEEecChhhHHHhccCCCC------------CcC
Q 003513 642 KIDCNDMVQKSRQPYVFRSLEKVTVRFCRNLRHLT-FLVFAPNLKSISVRYCDDMEEIISAGEFD------------DIP 708 (814)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~------------~~~ 708 (814)
...- ..-.+|++|+|+.+ .++.+| .+..+++|+.|.+.+ ++++--......+ ..-
T Consensus 261 ~~~~----------~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN~L 328 (1255)
T KOG0444|consen 261 NMTE----------GEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANNKL 328 (1255)
T ss_pred eccH----------HHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhcccc
Confidence 1110 12345666666663 455554 344555555555544 2221100000000 000
Q ss_pred CccccCCCCCCCcceeccccccccccccCCCCCCCCccEEEEeCCCCCCCCCC
Q 003513 709 EMTGIINSPFAKLQRLELWGLVRLKSIYWKPLPLPRLKVLQVWGCDSLKKLPL 761 (814)
Q Consensus 709 ~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~ 761 (814)
.+-+..+..|++|+.|.|.. ..|-.+|..+.-++.|+.|+++..|+|.--|.
T Consensus 329 ElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 329 ELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred ccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 11113455678888888875 56777888888889999999999998876554
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=7.1e-21 Score=232.87 Aligned_cols=303 Identities=19% Similarity=0.236 Sum_probs=171.9
Q ss_pred CCCCCcccEEEcccCCCc-------cccchhhccC-CcccEEEccCCccccccCcccccccccCEEEecCCCCcccChhh
Q 003513 445 VPTCPHLLTLFLNRNPLR-------TITGGFFQSM-SCLTVLKMSDNIMLRQLPMGISKLVSLQLLDISNTSVTELPEDL 516 (814)
Q Consensus 445 ~~~l~~L~~L~l~~~~~~-------~~~~~~~~~l-~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i 516 (814)
+.++++|+.|.+..+... .+|.. +..+ .+||+|++.++ .++.+|..+ .+.+|+.|+++++++..+|..+
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~-~~~lp~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~ 630 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEG-FDYLPPKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQGSKLEKLWDGV 630 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcc-hhhcCcccEEEEecCC-CCCCCCCcC-CccCCcEEECcCcccccccccc
Confidence 455666666666443211 12222 2233 24666666655 555555544 3455666666666555555555
Q ss_pred hcCCCCceeccccccccceeCccccCCCcccceeeccccCcccchhhhchHHHHcCCCCccEEEEEecC-hhhHHHHhcc
Q 003513 517 KALVNLKCLNLVWAKELVVVPQQLLSNFSRLRVLRMFATGFLLSSWHENVAEELLGLKYLEVLEISFRS-FEAYQTFLSS 595 (814)
Q Consensus 517 ~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~ 595 (814)
..+++|+.|++++|..+..+|. ++.+++|+.|++.+|.. ...++..+.++++|+.|++++|. +..++..
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~-----L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--- 700 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSS-----LVELPSSIQYLNKLEDLDMSRCENLEILPTG--- 700 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCC-----ccccchhhhccCCCCEEeCCCCCCcCccCCc---
Confidence 5566666666655555555553 45556666666655544 23445555555666666655432 2222111
Q ss_pred ccccccceeeeecccCCCCcccccCccCCCCCcEEEeccCCCcceEEec-------------------ccccccc-cCCc
Q 003513 596 QKLRSCTHALLLHRFDREESIDVADLADLEQLNTLDFYGCGCIKGLKID-------------------CNDMVQK-SRQP 655 (814)
Q Consensus 596 ~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~-------------------~~~~~~~-~~~~ 655 (814)
. ..++|+.|.+++|..+..++. ...+|+.|+++++. ++.++.. +...... +...
T Consensus 701 i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~ 774 (1153)
T PLN03210 701 I-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMT 774 (1153)
T ss_pred C-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCc-cccccccccccccccccccccchhhccccccccchhhh
Confidence 1 123455555555543332220 12344444444433 1111100 0000000 0111
Q ss_pred cccCCccEEeeecCccccccc-ccccCCCCcEEEEecChhhHHHhccCCCCCcCCccccCCCCCCCcceecccccccc--
Q 003513 656 YVFRSLEKVTVRFCRNLRHLT-FLVFAPNLKSISVRYCDDMEEIISAGEFDDIPEMTGIINSPFAKLQRLELWGLVRL-- 732 (814)
Q Consensus 656 ~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L-- 732 (814)
..+++|+.|+|++|+.+..+| .++.+++|+.|+|++|+.++.++.. ..+++|+.|++++|.++
T Consensus 775 ~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~--------------~~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 775 MLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG--------------INLESLESLDLSGCSRLRT 840 (1153)
T ss_pred hccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC--------------CCccccCEEECCCCCcccc
Confidence 235789999999998888776 5788999999999999988876431 13455555555555444
Q ss_pred ------------------ccccCCCCCCCCccEEEEeCCCCCCCCCCCCCC-CCCcceEEEechhhh
Q 003513 733 ------------------KSIYWKPLPLPRLKVLQVWGCDSLKKLPLDSNS-ANGRRILIRGVEDWW 780 (814)
Q Consensus 733 ------------------~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~-~~l~~~~i~~~~~~~ 780 (814)
+.+|..+..+++|+.|++.+|++|+.+|..... .+++.+.+.+|..+.
T Consensus 841 ~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 841 FPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred ccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 444555566899999999999999999986544 778888999998775
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=1.6e-22 Score=210.41 Aligned_cols=344 Identities=19% Similarity=0.264 Sum_probs=252.9
Q ss_pred EEcCCCcc--cCCCCccCcccEEEEEcccCCCcCCC-CCCCCCcccEEEcccCCCccccchhhccCCcccEEEccCCccc
Q 003513 410 VYAGSGLT--KAPADVRGWEMVRRLSLMKNSIENLP-TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIML 486 (814)
Q Consensus 410 ~~~~~~~~--~~p~~~~~~~~l~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 486 (814)
..+++++. .+|.+...++.+++|.|....+..+| .++.|.+|+.|.+.+|.+..+... +..++.||.++++.| ++
T Consensus 13 DfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LRsv~~R~N-~L 90 (1255)
T KOG0444|consen 13 DFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE-LSDLPRLRSVIVRDN-NL 90 (1255)
T ss_pred cccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh-hccchhhHHHhhhcc-cc
Confidence 34455544 57788889999999999999999998 488999999999999998888776 889999999999998 55
Q ss_pred c--ccCcccccccccCEEEecCCCCcccChhhhcCCCCceeccccccccceeCccccCCCcccceeeccccCcccchhhh
Q 003513 487 R--QLPMGISKLVSLQLLDISNTSVTELPEDLKALVNLKCLNLVWAKELVVVPQQLLSNFSRLRVLRMFATGFLLSSWHE 564 (814)
Q Consensus 487 ~--~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~ 564 (814)
+ -+|..|-.+..|..|+||+|++++.|..+...+++-.|+|++|.+ ..+|..++.+|+.|-.|++++|.+ .
T Consensus 91 KnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~NrL------e 163 (1255)
T KOG0444|consen 91 KNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSNNRL------E 163 (1255)
T ss_pred ccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcc-ccCCchHHHhhHhHhhhccccchh------h
Confidence 4 579999999999999999999999999999999999999999864 899998899999999999999987 6
Q ss_pred chHHHHcCCCCccEEEEEecChhhHHHHhccccccccceeeeecccCCCCcccccCccCCCCCcEEEeccCCCcceEEec
Q 003513 565 NVAEELLGLKYLEVLEISFRSFEAYQTFLSSQKLRSCTHALLLHRFDREESIDVADLADLEQLNTLDFYGCGCIKGLKID 644 (814)
Q Consensus 565 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~ 644 (814)
..|..+..+.+|++|.+++|.+.-+. ...+....+|+.|.+++.....+--..++..+.||+.+|++.|. +..+
T Consensus 164 ~LPPQ~RRL~~LqtL~Ls~NPL~hfQ--LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~v--- 237 (1255)
T KOG0444|consen 164 MLPPQIRRLSMLQTLKLSNNPLNHFQ--LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIV--- 237 (1255)
T ss_pred hcCHHHHHHhhhhhhhcCCChhhHHH--HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcc---
Confidence 78888999999999999999865432 12222345677788877654332222677788999999998765 4322
Q ss_pred ccccccccCCccccCCccEEeeecCccccccc-ccccCCCCcEEEEecChhhHHHhcc-------------CCCCCcCCc
Q 003513 645 CNDMVQKSRQPYVFRSLEKVTVRFCRNLRHLT-FLVFAPNLKSISVRYCDDMEEIISA-------------GEFDDIPEM 710 (814)
Q Consensus 645 ~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~-------------~~~~~~~~~ 710 (814)
|.....+++|+.|+|+++ .++.+. ..+.-.+|+.|+++. ++++.++.. .+--....+
T Consensus 238 -------Pecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~FeGi 308 (1255)
T KOG0444|consen 238 -------PECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTFEGI 308 (1255)
T ss_pred -------hHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccCcccccCC
Confidence 223346899999999995 577665 245567899999988 666655321 000000111
Q ss_pred cccCCCCCCCcceeccccccccccccCCCCCCCCccEEEEeCCCCCCCCCCCCCC-CCCcceEEEechhhh
Q 003513 711 TGIINSPFAKLQRLELWGLVRLKSIYWKPLPLPRLKVLQVWGCDSLKKLPLDSNS-ANGRRILIRGVEDWW 780 (814)
Q Consensus 711 ~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~-~~l~~~~i~~~~~~~ 780 (814)
+ ...+.+..|+.+...+ .+|+-+|.+...|+.|+.|.+ +|..|-+||..... ..++.+.++.++++.
T Consensus 309 P-SGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L-~~NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 309 P-SGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKL-DHNRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred c-cchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcc-cccceeechhhhhhcCCcceeeccCCcCcc
Confidence 1 1223333444444444 345556666666777777776 35566677765433 566777777776654
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=1.2e-21 Score=202.78 Aligned_cols=318 Identities=19% Similarity=0.265 Sum_probs=144.2
Q ss_pred cCcccEEEEEcccCCCcCCCCCCCCC-cccEEEcccCCCccccchhhccCCcccEEEccCCccccccCc-ccccccccCE
Q 003513 424 RGWEMVRRLSLMKNSIENLPTVPTCP-HLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPM-GISKLVSLQL 501 (814)
Q Consensus 424 ~~~~~l~~L~l~~~~~~~l~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~ 501 (814)
.++.+|+.+++..|.++.+|.++... +|+.|+|.+|.+..+..+.+..++.||.||||.| .+.++|. ++..-.++++
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKK 177 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceE
Confidence 34444555555555555555443322 2555555555444444444444555555555555 4444432 1222244455
Q ss_pred EEecCCCCcccC-hhhhcCCCCceeccccccccceeCccccCCCcccceeeccccCcccchhhhchHHHHcCC-------
Q 003513 502 LDISNTSVTELP-EDLKALVNLKCLNLVWAKELVVVPQQLLSNFSRLRVLRMFATGFLLSSWHENVAEELLGL------- 573 (814)
Q Consensus 502 L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l------- 573 (814)
|+|++|.|+.+. ..+..+.+|..|.|+.|+. +.+|...+.+|+.|+.|++..|.+ .......+.+|
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNri-ttLp~r~Fk~L~~L~~LdLnrN~i-----rive~ltFqgL~Sl~nlk 251 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRNRI-TTLPQRSFKRLPKLESLDLNRNRI-----RIVEGLTFQGLPSLQNLK 251 (873)
T ss_pred EeeccccccccccccccccchheeeecccCcc-cccCHHHhhhcchhhhhhccccce-----eeehhhhhcCchhhhhhh
Confidence 555555444332 2334444444455544432 444444444445555554444433 11112223344
Q ss_pred -----------------CCccEEEEEecChhhHHHHhccccccccceeeeecccCCCCcccccCccCCCCCcEEEeccCC
Q 003513 574 -----------------KYLEVLEISFRSFEAYQTFLSSQKLRSCTHALLLHRFDREESIDVADLADLEQLNTLDFYGCG 636 (814)
Q Consensus 574 -----------------~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 636 (814)
.++++|+++.|++..+.. .+.--...|+.|+++.+. ...+.+.+..-.++|+.|+|++|.
T Consensus 252 lqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~--g~lfgLt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N~ 328 (873)
T KOG4194|consen 252 LQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE--GWLFGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSNR 328 (873)
T ss_pred hhhcCcccccCcceeeecccceeecccchhhhhhc--ccccccchhhhhccchhh-hheeecchhhhcccceeEeccccc
Confidence 444445554444433221 001111233344443322 122222223333444444444443
Q ss_pred CcceEEecccccccccCCccccCCccEEeeecCccccccc--ccccCCCCcEEEEecChhhHHHhccCCCCCcCCccccC
Q 003513 637 CIKGLKIDCNDMVQKSRQPYVFRSLEKVTVRFCRNLRHLT--FLVFAPNLKSISVRYCDDMEEIISAGEFDDIPEMTGII 714 (814)
Q Consensus 637 ~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~ 714 (814)
++.++...+ ..+..|+.|.|+.+ ++.++. .+..+.+|++|+|++ +.+.-.++. ....
T Consensus 329 -i~~l~~~sf---------~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~-N~ls~~IED---------aa~~ 387 (873)
T KOG4194|consen 329 -ITRLDEGSF---------RVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRS-NELSWCIED---------AAVA 387 (873)
T ss_pred -cccCChhHH---------HHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcC-CeEEEEEec---------chhh
Confidence 221222111 23445555555553 333332 233455666666555 222211110 1134
Q ss_pred CCCCCCcceeccccccccccccCC-CCCCCCccEEEEeCCCCCCCC-CCCCCCCCCcceEEE
Q 003513 715 NSPFAKLQRLELWGLVRLKSIYWK-PLPLPRLKVLQVWGCDSLKKL-PLDSNSANGRRILIR 774 (814)
Q Consensus 715 ~~~~~~L~~L~L~~~~~L~~l~~~-~~~~~~L~~L~i~~C~~L~~l-p~~~~~~~l~~~~i~ 774 (814)
..++|+|++|.+.+ .++++++.. +..+++||.|++.+.+ +.++ |-.+.+..++.+.+.
T Consensus 388 f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 388 FNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA-IASIQPNAFEPMELKELVMN 447 (873)
T ss_pred hccchhhhheeecC-ceeeecchhhhccCcccceecCCCCc-ceeecccccccchhhhhhhc
Confidence 56789999999998 578888753 4568999999988764 3333 333334555555443
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=5.8e-21 Score=197.89 Aligned_cols=320 Identities=19% Similarity=0.240 Sum_probs=210.8
Q ss_pred cEEEEcCCCcccCC-CCccC--cccEEEEEcccCCCcCCC--CCCCCCcccEEEcccCCCccccchhhccCCcccEEEcc
Q 003513 407 GFLVYAGSGLTKAP-ADVRG--WEMVRRLSLMKNSIENLP--TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMS 481 (814)
Q Consensus 407 ~~l~~~~~~~~~~p-~~~~~--~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 481 (814)
..+..++..++.+. ..+.+ .+..+.|++++|.+.++. .+.++++|+.+.+.+|.++.+|.. .....||+.|+|.
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f-~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRF-GHESGHLEKLDLR 133 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccc-cccccceeEEeee
Confidence 44555565555431 01111 135678999999988765 478999999999999999888762 4556679999999
Q ss_pred CCcccccc-CcccccccccCEEEecCCCCcccCh-hhhcCCCCceeccccccccceeCccccCCCcccceeeccccCccc
Q 003513 482 DNIMLRQL-PMGISKLVSLQLLDISNTSVTELPE-DLKALVNLKCLNLVWAKELVVVPQQLLSNFSRLRVLRMFATGFLL 559 (814)
Q Consensus 482 ~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~ 559 (814)
+| .+.++ .+.+..++.|+.||||.|.|+++|. .+..-.++++|+|++|.+ +.+..+.+..+.+|-.|.++.|.+
T Consensus 134 ~N-~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~I-t~l~~~~F~~lnsL~tlkLsrNri-- 209 (873)
T KOG4194|consen 134 HN-LISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRI-TTLETGHFDSLNSLLTLKLSRNRI-- 209 (873)
T ss_pred cc-ccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccc-cccccccccccchheeeecccCcc--
Confidence 99 66665 4568889999999999999998874 466668999999999965 677777799999999999999988
Q ss_pred chhhhchHHHHcCCCCccEEEEEecChhhHH--------HHhccc--------------cccccceeeeecccCCCCccc
Q 003513 560 SSWHENVAEELLGLKYLEVLEISFRSFEAYQ--------TFLSSQ--------------KLRSCTHALLLHRFDREESID 617 (814)
Q Consensus 560 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--------~~~~~~--------------~~~~~l~~L~l~~~~~~~~~~ 617 (814)
+.-.+..+.+|++|+.|++..|.+...+ ++.... -.+..++.|.|..+. +..+.
T Consensus 210 ---ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~-l~~vn 285 (873)
T KOG4194|consen 210 ---TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR-LQAVN 285 (873)
T ss_pred ---cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch-hhhhh
Confidence 5556677888999999999988754331 111000 011223333333222 11122
Q ss_pred ccCccCCCCCcEEEeccCCCcceEEecccccccccCCccccCCccEEeeecCccccccc--ccccCCCCcEEEEecChhh
Q 003513 618 VADLADLEQLNTLDFYGCGCIKGLKIDCNDMVQKSRQPYVFRSLEKVTVRFCRNLRHLT--FLVFAPNLKSISVRYCDDM 695 (814)
Q Consensus 618 ~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l 695 (814)
-..+-+++.|+.|+++.|. +..+.++.. ...++|+.|+|+++ .++.++ .+..+..|++|.|+. +.+
T Consensus 286 ~g~lfgLt~L~~L~lS~Na-I~rih~d~W---------sftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~-Nsi 353 (873)
T KOG4194|consen 286 EGWLFGLTSLEQLDLSYNA-IQRIHIDSW---------SFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSH-NSI 353 (873)
T ss_pred cccccccchhhhhccchhh-hheeecchh---------hhcccceeEecccc-ccccCChhHHHHHHHhhhhcccc-cch
Confidence 2334445666666666554 333333322 24567777777664 455554 244566677777766 555
Q ss_pred HHHhccCCCCCcCCccccCCCCCCCcceeccccccccc----cccCCCCCCCCccEEEEeCCCCCCCCCC
Q 003513 696 EEIISAGEFDDIPEMTGIINSPFAKLQRLELWGLVRLK----SIYWKPLPLPRLKVLQVWGCDSLKKLPL 761 (814)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~----~l~~~~~~~~~L~~L~i~~C~~L~~lp~ 761 (814)
+.+.. .....+.+|++|+|.+.. +. +-...+..+++|++|.+.|. +|+++|.
T Consensus 354 ~~l~e------------~af~~lssL~~LdLr~N~-ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~k 409 (873)
T KOG4194|consen 354 DHLAE------------GAFVGLSSLHKLDLRSNE-LSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPK 409 (873)
T ss_pred HHHHh------------hHHHHhhhhhhhcCcCCe-EEEEEecchhhhccchhhhheeecCc-eeeecch
Confidence 55533 456677888888887732 22 21222345888999988765 5555554
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.77 E-value=6.1e-21 Score=189.37 Aligned_cols=307 Identities=22% Similarity=0.303 Sum_probs=207.5
Q ss_pred EEEcCCCcccCCCCccCcccEEEEEcccCCCcCCCCCCCCCcccEEEcccCCCccccchhhccCCcccEEEccCCccccc
Q 003513 409 LVYAGSGLTKAPADVRGWEMVRRLSLMKNSIENLPTVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQ 488 (814)
Q Consensus 409 l~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~ 488 (814)
+....+.++.+|+.+++++++..|++..|.+..+|.|.+|+.|..|.+..|.++.+|....+++.+|.+|||+.| .+++
T Consensus 188 ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke 266 (565)
T KOG0472|consen 188 LDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKE 266 (565)
T ss_pred cccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-cccc
Confidence 444556788999999999999999999999999999999999999999999999999998889999999999999 9999
Q ss_pred cCcccccccccCEEEecCCCCcccChhhhcCCCCceeccccccccceeCccccCC-------------------------
Q 003513 489 LPMGISKLVSLQLLDISNTSVTELPEDLKALVNLKCLNLVWAKELVVVPQQLLSN------------------------- 543 (814)
Q Consensus 489 lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~------------------------- 543 (814)
+|..++.+++|.+||+++|.|+.+|.+++++ +|+.|-+.||.. ..+-.+++.+
T Consensus 267 ~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl-rTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~ 344 (565)
T KOG0472|consen 267 VPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL-RTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGT 344 (565)
T ss_pred CchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch-HHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccc
Confidence 9999999999999999999999999999999 999999988864 3332222211
Q ss_pred ----------------CcccceeeccccCcccchhhhchHHHHcCC---CCccEEEEEecChhhHHHHhcccccccccee
Q 003513 544 ----------------FSRLRVLRMFATGFLLSSWHENVAEELLGL---KYLEVLEISFRSFEAYQTFLSSQKLRSCTHA 604 (814)
Q Consensus 544 ----------------l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 604 (814)
+.+.+.|++++-.. ..+|.+...- .-.+..+++.|.+..++.-... .......
T Consensus 345 e~~~t~~~~~~~~~~~~i~tkiL~~s~~ql------t~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~--lkelvT~ 416 (565)
T KOG0472|consen 345 ETAMTLPSESFPDIYAIITTKILDVSDKQL------TLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVE--LKELVTD 416 (565)
T ss_pred cccCCCCCCcccchhhhhhhhhhccccccc------ccCCHHHHHHhhhcceEEEecccchHhhhhhhhHH--HHHHHHH
Confidence 11222222221111 1122222111 1244555555555444321111 0011111
Q ss_pred eeecccCCCCcccccCccCCCCCcEEEeccCCCcceEEecccccccccCCccccCCccEEeeecCcccccccccccC-CC
Q 003513 605 LLLHRFDREESIDVADLADLEQLNTLDFYGCGCIKGLKIDCNDMVQKSRQPYVFRSLEKVTVRFCRNLRHLTFLVFA-PN 683 (814)
Q Consensus 605 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l-~~ 683 (814)
+.++.. ..+.....++.+++|..|+++++. +.+++.+. +.+..|+.|+++.+ .+..+|.+... ..
T Consensus 417 l~lsnn--~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e~----------~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~ 482 (565)
T KOG0472|consen 417 LVLSNN--KISFVPLELSQLQKLTFLDLSNNL-LNDLPEEM----------GSLVRLQTLNLSFN-RFRMLPECLYELQT 482 (565)
T ss_pred HHhhcC--ccccchHHHHhhhcceeeecccch-hhhcchhh----------hhhhhhheeccccc-ccccchHHHhhHHH
Confidence 222211 112222446667888888887765 44443333 34667888888886 45555543332 23
Q ss_pred CcEEEEecChhhHHHhccCCCCCcCCccccCCCCCCCcceeccccccccccccCCCCCCCCccEEEEeCCC
Q 003513 684 LKSISVRYCDDMEEIISAGEFDDIPEMTGIINSPFAKLQRLELWGLVRLKSIYWKPLPLPRLKVLQVWGCD 754 (814)
Q Consensus 684 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~ 754 (814)
|+.+-.++ +++..+.. .....+.+|..|+|.+ ..+..+|...++|.+|++|.+.|.|
T Consensus 483 lEtllas~-nqi~~vd~------------~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 483 LETLLASN-NQIGSVDP------------SGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred HHHHHhcc-ccccccCh------------HHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 33333333 44444322 2456788888999988 5788999999999999999998885
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.69 E-value=1.2e-19 Score=180.29 Aligned_cols=167 Identities=22% Similarity=0.299 Sum_probs=101.2
Q ss_pred cCCCcccCCCCccCcccEEEEEcccCCCcCCCC-CCCCCcccEEEcccCCCccccchhhccCCcccEEEccCCccccccC
Q 003513 412 AGSGLTKAPADVRGWEMVRRLSLMKNSIENLPT-VPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLP 490 (814)
Q Consensus 412 ~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp 490 (814)
.++++..+|+++..+.++..+.+.+|.+..+|. .-.++.|+.|+...|-++.+|+. ++.|..|..|+|..| .+..+|
T Consensus 145 ~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~-lg~l~~L~~LyL~~N-ki~~lP 222 (565)
T KOG0472|consen 145 TNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPE-LGGLESLELLYLRRN-KIRFLP 222 (565)
T ss_pred cccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChh-hcchhhhHHHHhhhc-ccccCC
Confidence 334445555555555555555555555554442 22355555555555555555555 555555555555555 555555
Q ss_pred cccccccccCEEEecCCCCcccChhhh-cCCCCceeccccccccceeCccccCCCcccceeeccccCcccchhhhchHHH
Q 003513 491 MGISKLVSLQLLDISNTSVTELPEDLK-ALVNLKCLNLVWAKELVVVPQQLLSNFSRLRVLRMFATGFLLSSWHENVAEE 569 (814)
Q Consensus 491 ~~i~~l~~L~~L~l~~~~l~~lp~~i~-~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 569 (814)
+|..+..|+.|+++.|+|+.+|..+. ++.+|..||+++|+ +++.|.+ +..+++|+.|++++|.+ ...+..
T Consensus 223 -ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde-~clLrsL~rLDlSNN~i------s~Lp~s 293 (565)
T KOG0472|consen 223 -EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDE-ICLLRSLERLDLSNNDI------SSLPYS 293 (565)
T ss_pred -CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc-cccCchH-HHHhhhhhhhcccCCcc------ccCCcc
Confidence 55555566666666666666665554 67777777777775 3677776 66777777777777765 456667
Q ss_pred HcCCCCccEEEEEecChhhHH
Q 003513 570 LLGLKYLEVLEISFRSFEAYQ 590 (814)
Q Consensus 570 l~~l~~L~~L~l~~~~~~~~~ 590 (814)
++++ +|+.|-+.+|.+..+.
T Consensus 294 Lgnl-hL~~L~leGNPlrTiR 313 (565)
T KOG0472|consen 294 LGNL-HLKFLALEGNPLRTIR 313 (565)
T ss_pred cccc-eeeehhhcCCchHHHH
Confidence 7777 7777777777765554
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=1.8e-15 Score=171.77 Aligned_cols=243 Identities=23% Similarity=0.178 Sum_probs=159.6
Q ss_pred HHHHHHHhhhccccccEEEEcCCCcccCCCCccCcccEEEEEcccCCCcCCCCCCCCCcccEEEcccCCCccccchhhcc
Q 003513 392 DMALWITCEIEKEKEGFLVYAGSGLTKAPADVRGWEMVRRLSLMKNSIENLPTVPTCPHLLTLFLNRNPLRTITGGFFQS 471 (814)
Q Consensus 392 ~~a~~i~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 471 (814)
..|....+++...+...+.+.++.+..+|+.+. .+++.|++.+|.++.+|.. +++|++|++++|.++.+|..
T Consensus 189 ~~a~~r~~~Cl~~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---- 260 (788)
T PRK15387 189 AAVVQKMRACLNNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---- 260 (788)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----
Confidence 344444444444556778888999999988775 4799999999999999864 68999999999999887642
Q ss_pred CCcccEEEccCCccccccCcccccccccCEEEecCCCCcccChhhhcCCCCceeccccccccceeCccccCCCcccceee
Q 003513 472 MSCLTVLKMSDNIMLRQLPMGISKLVSLQLLDISNTSVTELPEDLKALVNLKCLNLVWAKELVVVPQQLLSNFSRLRVLR 551 (814)
Q Consensus 472 l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~ 551 (814)
.++|+.|++++| .+..+|.. ..+|+.|++++|+++.+|.. +++|+.|++++|.. ..+|.. . .+|+.|+
T Consensus 261 p~sL~~L~Ls~N-~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L-~~Lp~l-p---~~L~~L~ 328 (788)
T PRK15387 261 PPGLLELSIFSN-PLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQL-ASLPAL-P---SELCKLW 328 (788)
T ss_pred ccccceeeccCC-chhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCcc-ccCCCC-c---ccccccc
Confidence 478999999999 78888853 35788999999999999863 47899999999865 566652 2 4577888
Q ss_pred ccccCcccchhhhchHHHHcCCCCccEEEEEecChhhHHHHhccccccccceeeeecccCCCCcccccCccCCCCCcEEE
Q 003513 552 MFATGFLLSSWHENVAEELLGLKYLEVLEISFRSFEAYQTFLSSQKLRSCTHALLLHRFDREESIDVADLADLEQLNTLD 631 (814)
Q Consensus 552 l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 631 (814)
+.+|.+ ..++. -..+|+.|++++|.+..++.. ..+++.|.+.++. +..++ .+ ..+|+.|+
T Consensus 329 Ls~N~L------~~LP~---lp~~Lq~LdLS~N~Ls~LP~l------p~~L~~L~Ls~N~-L~~LP--~l--~~~L~~Ld 388 (788)
T PRK15387 329 AYNNQL------TSLPT---LPSGLQELSVSDNQLASLPTL------PSELYKLWAYNNR-LTSLP--AL--PSGLKELI 388 (788)
T ss_pred cccCcc------ccccc---cccccceEecCCCccCCCCCC------Ccccceehhhccc-cccCc--cc--ccccceEE
Confidence 888776 22221 124788999998887654432 2244445444432 12221 11 23566666
Q ss_pred eccCCCcceEEecccccccccCCccccCCccEEeeecCcccccccccccCCCCcEEEEec
Q 003513 632 FYGCGCIKGLKIDCNDMVQKSRQPYVFRSLEKVTVRFCRNLRHLTFLVFAPNLKSISVRY 691 (814)
Q Consensus 632 l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~ 691 (814)
+++|. ++.++ ..+++|+.|+++++ .++.+|.+ +.+|+.|++++
T Consensus 389 Ls~N~-Lt~LP-------------~l~s~L~~LdLS~N-~LssIP~l--~~~L~~L~Ls~ 431 (788)
T PRK15387 389 VSGNR-LTSLP-------------VLPSELKELMVSGN-RLTSLPML--PSGLLSLSVYR 431 (788)
T ss_pred ecCCc-ccCCC-------------CcccCCCEEEccCC-cCCCCCcc--hhhhhhhhhcc
Confidence 65554 22111 01245666666664 34444422 33455555555
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.60 E-value=1.2e-16 Score=175.23 Aligned_cols=87 Identities=32% Similarity=0.513 Sum_probs=50.7
Q ss_pred EEEEEcccCCCcCCC-CCCCCCcccEEEcccCCCccccchhhccCCcccEEEccCCccccccCcccccccccCEEEecCC
Q 003513 429 VRRLSLMKNSIENLP-TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGISKLVSLQLLDISNT 507 (814)
Q Consensus 429 l~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~ 507 (814)
|+.|++++|.+...| .+..+.+|+.|.++.|.+...|.+ ..++.+|++|+|.+| .++.+|.++..+++|++|+++.|
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s-~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS~N 124 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSS-CSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLSFN 124 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchh-hhhhhcchhheeccc-hhhcCchhHHhhhcccccccchh
Confidence 556666666655555 345555666666666665555533 555666666666666 55666666666666666666666
Q ss_pred CCcccChhhh
Q 003513 508 SVTELPEDLK 517 (814)
Q Consensus 508 ~l~~lp~~i~ 517 (814)
++..+|..+.
T Consensus 125 ~f~~~Pl~i~ 134 (1081)
T KOG0618|consen 125 HFGPIPLVIE 134 (1081)
T ss_pred ccCCCchhHH
Confidence 5555554443
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=9.1e-17 Score=141.43 Aligned_cols=161 Identities=20% Similarity=0.348 Sum_probs=131.8
Q ss_pred CCccCcccEEEEEcccCCCcCCC-CCCCCCcccEEEcccCCCccccchhhccCCcccEEEccCCccccccCccccccccc
Q 003513 421 ADVRGWEMVRRLSLMKNSIENLP-TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGISKLVSL 499 (814)
Q Consensus 421 ~~~~~~~~l~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L 499 (814)
+.+..++++.+|.+++|.+..+| .+..+.+|++|++++|+++.+|.+ ++.+++||.|++.-| .+..+|..++.++-|
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFGSFPAL 104 (264)
T ss_pred ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCccccCCCchh
Confidence 44556778888888888888765 578888888888888888888877 788888888888888 778888888888888
Q ss_pred CEEEecCCCCc--ccChhhhcCCCCceeccccccccceeCccccCCCcccceeeccccCcccchhhhchHHHHcCCCCcc
Q 003513 500 QLLDISNTSVT--ELPEDLKALVNLKCLNLVWAKELVVVPQQLLSNFSRLRVLRMFATGFLLSSWHENVAEELLGLKYLE 577 (814)
Q Consensus 500 ~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~ 577 (814)
+.||+.+|++. .+|..+-.+..|+-|++++|.+ +.+|++ ++++++|+.|.+..|.. ...|.+++.+..|+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~d-vg~lt~lqil~lrdndl------l~lpkeig~lt~lr 176 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPD-VGKLTNLQILSLRDNDL------LSLPKEIGDLTRLR 176 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChh-hhhhcceeEEeeccCch------hhCcHHHHHHHHHH
Confidence 88888888776 6788888888888888888865 777877 78888888888888776 56788888888888
Q ss_pred EEEEEecChhhHHH
Q 003513 578 VLEISFRSFEAYQT 591 (814)
Q Consensus 578 ~L~l~~~~~~~~~~ 591 (814)
.|.+.+|.+..++.
T Consensus 177 elhiqgnrl~vlpp 190 (264)
T KOG0617|consen 177 ELHIQGNRLTVLPP 190 (264)
T ss_pred HHhcccceeeecCh
Confidence 88888888765543
No 16
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.53 E-value=8.2e-13 Score=161.40 Aligned_cols=293 Identities=16% Similarity=0.208 Sum_probs=186.3
Q ss_pred cCCCCCcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECC-ccCHHHHHHH
Q 003513 65 ERPTEPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSK-DLQLEKIQET 143 (814)
Q Consensus 65 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~ 143 (814)
+|+..+.+|-|+.-.+.+ ......+++.|+|++|.||||++.++.+.. + .++|+++.. +.+...+...
T Consensus 9 ~p~~~~~~~~R~rl~~~l----~~~~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~ 77 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKL----SGANNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASY 77 (903)
T ss_pred CCCCccccCcchHHHHHH----hcccCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHH
Confidence 344456788888666655 333367899999999999999999988643 2 589999864 4455666666
Q ss_pred HHHHhCCCCCC-----------CCCCCHHHHHHHHHHHhc--cCceEEEEccccCcc------ccccccccCCCCcEEEE
Q 003513 144 IGKKIGLCNDS-----------WKNKSLEEKAHDIFKTLS--KKKFALLLDDLWERV------DLKKIGVPLPKNSAVVF 204 (814)
Q Consensus 144 i~~~l~~~~~~-----------~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~------~~~~~~~~~~~~~~iii 204 (814)
++..++..... ....+.......+...+. +++++|||||+.... .+..+....+++.++||
T Consensus 78 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~ 157 (903)
T PRK04841 78 LIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVV 157 (903)
T ss_pred HHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEE
Confidence 66666311100 011223334444444443 579999999996542 23333344566889999
Q ss_pred ecCCccccc--cCC-ccceEEec----cCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHHHHhcc
Q 003513 205 TTRFVDVCG--GME-ARRMFKVA----CLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIGRAMAY 277 (814)
Q Consensus 205 TtR~~~~~~--~~~-~~~~~~l~----~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~ 277 (814)
|||...... .+. .....++. +|+.+|+.++|....+... ..+.+.+|.+.|+|+|+++..++..+..
T Consensus 158 ~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 158 LSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI------EAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred EeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC------CHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 999743221 111 12345555 9999999999987765422 1567889999999999999998877754
Q ss_pred CCCHHHHHHHHHHHhhhhcccCCC-chhhhhhhhh-hccCCCchhhHHHHhhhcCCCCCCccChHHHHHHHHhcCCCCCc
Q 003513 278 KKTPEEWRYAIEVLRRSASEFAGL-GKEVYPLLKF-SYDCLPNDAIRSCFLYCCLYPEDFSIDKRDLIDCWMCEGFLEGD 355 (814)
Q Consensus 278 ~~~~~~w~~~l~~l~~~~~~~~~~-~~~i~~~l~~-sy~~L~~~~~k~~fl~~~~fp~~~~i~~~~li~~w~~~g~~~~~ 355 (814)
..... ......+ .+. ...+...+.- .++.||+ +.+.++...|+++ .++.+ +...- ..
T Consensus 232 ~~~~~--~~~~~~~-------~~~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---~~~~~-l~~~l-----~~-- 290 (903)
T PRK04841 232 NNSSL--HDSARRL-------AGINASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---SMNDA-LIVRV-----TG-- 290 (903)
T ss_pred CCCch--hhhhHhh-------cCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---cCCHH-HHHHH-----cC--
Confidence 22100 0111111 110 1235544433 4789999 7999999999987 23322 22211 11
Q ss_pred ccccchhhHHHHHHHHHhccccc-c--cCcceeehHHHHHHHHHHHh
Q 003513 356 KFGTQNQGYYIVGTLVHACLLEE-V--EDDQVKMHDVVRDMALWITC 399 (814)
Q Consensus 356 ~~~~~~~~~~~l~~L~~~~ll~~-~--~~~~~~mH~lv~~~a~~i~~ 399 (814)
.+.....+++|.+.+++.. . +...|++|++++++.+....
T Consensus 291 ----~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 291 ----EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred ----CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence 2234677999999999653 2 23479999999999987653
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=8.1e-14 Score=159.61 Aligned_cols=240 Identities=23% Similarity=0.275 Sum_probs=156.8
Q ss_pred ccEEEEcCCCcccCCCCccCcccEEEEEcccCCCcCCCCCCCCCcccEEEcccCCCccccchhhccCCcccEEEccCCcc
Q 003513 406 EGFLVYAGSGLTKAPADVRGWEMVRRLSLMKNSIENLPTVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIM 485 (814)
Q Consensus 406 ~~~l~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 485 (814)
...+.+.+.++..+|..+. .+++.|++++|.+..+|.. .+++|++|++++|.++.+|..+ ..+|+.|+|++| .
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N-~ 252 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPATL---PDTIQEMELSIN-R 252 (754)
T ss_pred ceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChh-hccCCCEEECCCCccccCChhh---hccccEEECcCC-c
Confidence 4456677778888876654 4788999999998888753 2368999999999888877653 347899999999 7
Q ss_pred ccccCcccccccccCEEEecCCCCcccChhhhcCCCCceeccccccccceeCccccCCCcccceeeccccCcccchhhhc
Q 003513 486 LRQLPMGISKLVSLQLLDISNTSVTELPEDLKALVNLKCLNLVWAKELVVVPQQLLSNFSRLRVLRMFATGFLLSSWHEN 565 (814)
Q Consensus 486 ~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 565 (814)
+..+|..+. .+|++|++++|+++.+|..+. .+|+.|++++|.. ..+|.. +. ++|+.|++++|.+ ..
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~L-t~LP~~-lp--~sL~~L~Ls~N~L------t~ 318 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSI-RTLPAH-LP--SGITHLNVQSNSL------TA 318 (754)
T ss_pred cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCcc-ccCccc-ch--hhHHHHHhcCCcc------cc
Confidence 778887664 479999999999988887664 5899999998854 667754 22 4788888888776 12
Q ss_pred hHHHHcCCCCccEEEEEecChhhHHHHhccccccccceeeeecccCCCCcccccCccCCCCCcEEEeccCCCcceEEecc
Q 003513 566 VAEELLGLKYLEVLEISFRSFEAYQTFLSSQKLRSCTHALLLHRFDREESIDVADLADLEQLNTLDFYGCGCIKGLKIDC 645 (814)
Q Consensus 566 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~ 645 (814)
++..+ .++|+.|+++.|.+..++.. ++++|+.|.++++. +..++ ..+ .++|+.|+|++|. +..++..
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt~LP~~-----l~~sL~~L~Ls~N~-L~~LP-~~l--p~~L~~LdLs~N~-Lt~LP~~- 385 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALTSLPAS-----LPPELQVLDVSKNQ-ITVLP-ETL--PPTITTLDVSRNA-LTNLPEN- 385 (754)
T ss_pred CCccc--cccceeccccCCccccCChh-----hcCcccEEECCCCC-CCcCC-hhh--cCCcCEEECCCCc-CCCCCHh-
Confidence 23222 25788888888776654421 23466666666654 22222 122 2466677776664 3222111
Q ss_pred cccccccCCccccCCccEEeeecCcccccccc-----cccCCCCcEEEEec
Q 003513 646 NDMVQKSRQPYVFRSLEKVTVRFCRNLRHLTF-----LVFAPNLKSISVRY 691 (814)
Q Consensus 646 ~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~-----l~~l~~L~~L~l~~ 691 (814)
...+|+.|++++| +++.+|. ...++++..|++.+
T Consensus 386 -----------l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~ 424 (754)
T PRK15370 386 -----------LPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEY 424 (754)
T ss_pred -----------HHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeC
Confidence 1235666666664 3444431 12345666666665
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=8.3e-16 Score=135.42 Aligned_cols=162 Identities=24% Similarity=0.401 Sum_probs=139.4
Q ss_pred CCcCCCCCCCCCcccEEEcccCCCccccchhhccCCcccEEEccCCccccccCcccccccccCEEEecCCCCcccChhhh
Q 003513 438 SIENLPTVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGISKLVSLQLLDISNTSVTELPEDLK 517 (814)
Q Consensus 438 ~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~ 517 (814)
++..+|.+..+++.+.|.+++|.++.+|+. +..+.+|++|++++| .++++|.+|+.+++|+.|+++-|++..+|.+++
T Consensus 22 sf~~~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred cHhhcccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 355677788889999999999999999998 889999999999999 999999999999999999999999999999999
Q ss_pred cCCCCceeccccccccc-eeCccccCCCcccceeeccccCcccchhhhchHHHHcCCCCccEEEEEecChhhHHHHhccc
Q 003513 518 ALVNLKCLNLVWAKELV-VVPQQLLSNFSRLRVLRMFATGFLLSSWHENVAEELLGLKYLEVLEISFRSFEAYQTFLSSQ 596 (814)
Q Consensus 518 ~l~~L~~L~l~~~~~l~-~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 596 (814)
.++-|+.||+.+|...+ .+|.. +-.++.|+.|++.+|.+ +..|.+++++++|+.|.+..|.+..++
T Consensus 100 s~p~levldltynnl~e~~lpgn-ff~m~tlralyl~dndf------e~lp~dvg~lt~lqil~lrdndll~lp------ 166 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDNDF------EILPPDVGKLTNLQILSLRDNDLLSLP------ 166 (264)
T ss_pred CCchhhhhhccccccccccCCcc-hhHHHHHHHHHhcCCCc------ccCChhhhhhcceeEEeeccCchhhCc------
Confidence 99999999999987654 35655 66789999999999877 678899999999999999988765443
Q ss_pred cccccceeeeecccCCCCcccccCccCCCCCcEEEeccCC
Q 003513 597 KLRSCTHALLLHRFDREESIDVADLADLEQLNTLDFYGCG 636 (814)
Q Consensus 597 ~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 636 (814)
..++.++.|+.|+|.++.
T Consensus 167 ----------------------keig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 167 ----------------------KEIGDLTRLRELHIQGNR 184 (264)
T ss_pred ----------------------HHHHHHHHHHHHhcccce
Confidence 345556777777777765
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.43 E-value=3.6e-13 Score=153.18 Aligned_cols=255 Identities=20% Similarity=0.153 Sum_probs=187.7
Q ss_pred cEEEEEcccCCCcCCCCCCCCCcccEEEcccCCCccccchhhccCCcccEEEccCCccccccCcccccccccCEEEecCC
Q 003513 428 MVRRLSLMKNSIENLPTVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGISKLVSLQLLDISNT 507 (814)
Q Consensus 428 ~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~ 507 (814)
+-..|+++.+.+..+|.-. .++|+.|.+.+|.++.+|. ..++|++|+|++| .++.+|.. .++|+.|++++|
T Consensus 202 ~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCC----CCCCCcEEEecCC-ccCcccCc---ccccceeeccCC
Confidence 3557899999999888621 2589999999999988775 3689999999999 88888853 468999999999
Q ss_pred CCcccChhhhcCCCCceeccccccccceeCccccCCCcccceeeccccCcccchhhhchHHHHcCCCCccEEEEEecChh
Q 003513 508 SVTELPEDLKALVNLKCLNLVWAKELVVVPQQLLSNFSRLRVLRMFATGFLLSSWHENVAEELLGLKYLEVLEISFRSFE 587 (814)
Q Consensus 508 ~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 587 (814)
.++.+|.. ..+|+.|++++|.. ..+|.. .++|+.|++++|.+ ..++. -..+|+.|.+++|.+.
T Consensus 273 ~L~~Lp~l---p~~L~~L~Ls~N~L-t~LP~~----p~~L~~LdLS~N~L------~~Lp~---lp~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 273 PLTHLPAL---PSGLCKLWIFGNQL-TSLPVL----PPGLQELSVSDNQL------ASLPA---LPSELCKLWAYNNQLT 335 (788)
T ss_pred chhhhhhc---hhhcCEEECcCCcc-cccccc----ccccceeECCCCcc------ccCCC---CcccccccccccCccc
Confidence 99988863 36788999999864 677752 47899999999876 12221 1246788889988887
Q ss_pred hHHHHhccccccccceeeeecccCCCCcccccCccCCCCCcEEEeccCCCcceEEecccccccccCCccccCCccEEeee
Q 003513 588 AYQTFLSSQKLRSCTHALLLHRFDREESIDVADLADLEQLNTLDFYGCGCIKGLKIDCNDMVQKSRQPYVFRSLEKVTVR 667 (814)
Q Consensus 588 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~ 667 (814)
.++. +...|+.|+++++. +..++ .+ ..+|+.|++++|. +..++ ..+.+|+.|+|+
T Consensus 336 ~LP~------lp~~Lq~LdLS~N~-Ls~LP--~l--p~~L~~L~Ls~N~-L~~LP-------------~l~~~L~~LdLs 390 (788)
T PRK15387 336 SLPT------LPSGLQELSVSDNQ-LASLP--TL--PSELYKLWAYNNR-LTSLP-------------ALPSGLKELIVS 390 (788)
T ss_pred cccc------cccccceEecCCCc-cCCCC--CC--Ccccceehhhccc-cccCc-------------ccccccceEEec
Confidence 6554 23478888888765 33332 12 3578888888765 33221 124579999999
Q ss_pred cCcccccccccccCCCCcEEEEecChhhHHHhccCCCCCcCCccccCCCCCCCcceeccccccccccccCCCCCCCCccE
Q 003513 668 FCRNLRHLTFLVFAPNLKSISVRYCDDMEEIISAGEFDDIPEMTGIINSPFAKLQRLELWGLVRLKSIYWKPLPLPRLKV 747 (814)
Q Consensus 668 ~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~ 747 (814)
++ .++.+|.. .++|+.|+++++ .++.++ ..+.+|+.|++.++ .++.+|..+..+++|+.
T Consensus 391 ~N-~Lt~LP~l--~s~L~~LdLS~N-~LssIP----------------~l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~ 449 (788)
T PRK15387 391 GN-RLTSLPVL--PSELKELMVSGN-RLTSLP----------------MLPSGLLSLSVYRN-QLTRLPESLIHLSSETT 449 (788)
T ss_pred CC-cccCCCCc--ccCCCEEEccCC-cCCCCC----------------cchhhhhhhhhccC-cccccChHHhhccCCCe
Confidence 86 56766643 478999999995 344331 12357888999884 68889988888999999
Q ss_pred EEEeCCC
Q 003513 748 LQVWGCD 754 (814)
Q Consensus 748 L~i~~C~ 754 (814)
|++++++
T Consensus 450 LdLs~N~ 456 (788)
T PRK15387 450 VNLEGNP 456 (788)
T ss_pred EECCCCC
Confidence 9999874
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.41 E-value=3.1e-13 Score=154.88 Aligned_cols=141 Identities=23% Similarity=0.382 Sum_probs=108.0
Q ss_pred cEEEEEcccCCCcCCCCCCCCCcccEEEcccCCCccccchhhccCCcccEEEccCCccccccCcccccccccCEEEecCC
Q 003513 428 MVRRLSLMKNSIENLPTVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGISKLVSLQLLDISNT 507 (814)
Q Consensus 428 ~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~ 507 (814)
+...|.+.++.+..+|.. -.++|+.|++++|.++.+|..++ .+|++|++++| .++.+|..+. .+|+.|++++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPAC-IPEQITTLILDNNELKSLPENLQ---GNIKTLYANSN-QLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred CceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChhhc---cCCCEEECCCC-ccccCChhhh--ccccEEECcCC
Confidence 456788988888888852 13689999999999998887643 58999999999 7888987654 47999999999
Q ss_pred CCcccChhhhcCCCCceeccccccccceeCccccCCCcccceeeccccCcccchhhhchHHHHcCCCCccEEEEEecChh
Q 003513 508 SVTELPEDLKALVNLKCLNLVWAKELVVVPQQLLSNFSRLRVLRMFATGFLLSSWHENVAEELLGLKYLEVLEISFRSFE 587 (814)
Q Consensus 508 ~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 587 (814)
.+.++|..+. .+|+.|++++|.. ..+|.. +. .+|+.|++++|.+ ..++..+. ++|+.|+++.|.+.
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N~L-~~LP~~-l~--~sL~~L~Ls~N~L------t~LP~~lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHNKI-SCLPEN-LP--EELRYLSVYDNSI------RTLPAHLP--SGITHLNVQSNSLT 317 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCCcc-Cccccc-cC--CCCcEEECCCCcc------ccCcccch--hhHHHHHhcCCccc
Confidence 9999998775 5899999998754 678875 32 5899999999876 12222221 35777777777665
Q ss_pred hH
Q 003513 588 AY 589 (814)
Q Consensus 588 ~~ 589 (814)
.+
T Consensus 318 ~L 319 (754)
T PRK15370 318 AL 319 (754)
T ss_pred cC
Confidence 43
No 21
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.40 E-value=4e-11 Score=132.23 Aligned_cols=297 Identities=17% Similarity=0.172 Sum_probs=200.0
Q ss_pred ccCCCCCcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCc-cCHHHHHH
Q 003513 64 DERPTEPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKD-LQLEKIQE 142 (814)
Q Consensus 64 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~ 142 (814)
.+|..+...|-|..- .+.|....+.+.+.|..|+|.|||||+.+++... ..-..|.|+++... .+...+..
T Consensus 13 ~~P~~~~~~v~R~rL----~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~ 84 (894)
T COG2909 13 VRPVRPDNYVVRPRL----LDRLRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLS 84 (894)
T ss_pred CCCCCcccccccHHH----HHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHH
Confidence 333334556777654 4555555678999999999999999999998843 44568999998654 46777888
Q ss_pred HHHHHhCCCCCC-----------CCCCCHHHHHHHHHHHhcc--CceEEEEccccCc------cccccccccCCCCcEEE
Q 003513 143 TIGKKIGLCNDS-----------WKNKSLEEKAHDIFKTLSK--KKFALLLDDLWER------VDLKKIGVPLPKNSAVV 203 (814)
Q Consensus 143 ~i~~~l~~~~~~-----------~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~------~~~~~~~~~~~~~~~ii 203 (814)
-++..++..... ....+...+...+...+.. ++..+||||..-. ..++.+....|++-..|
T Consensus 85 yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lv 164 (894)
T COG2909 85 YLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLV 164 (894)
T ss_pred HHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEE
Confidence 888777632210 1234455566666666554 6899999997533 34556666677899999
Q ss_pred EecCCcccccc--CC-ccceEEec----cCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHHHHhc
Q 003513 204 FTTRFVDVCGG--ME-ARRMFKVA----CLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIGRAMA 276 (814)
Q Consensus 204 iTtR~~~~~~~--~~-~~~~~~l~----~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~ 276 (814)
||||+..-... +. .....++. .++.+|+.++|....+.. -.+..+..+.+...|.+-|+..++=.++
T Consensus 165 v~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~------Ld~~~~~~L~~~teGW~~al~L~aLa~~ 238 (894)
T COG2909 165 VTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP------LDAADLKALYDRTEGWAAALQLIALALR 238 (894)
T ss_pred EEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC------CChHHHHHHHhhcccHHHHHHHHHHHcc
Confidence 99997754321 11 12233333 488999999998875332 2267788999999999999999998877
Q ss_pred cCCCHHHHHHHHHHHhhhhcccCCCchhhhhhh-hhhccCCCchhhHHHHhhhcCCCCCCccChHHHHHHHHhcCCCCCc
Q 003513 277 YKKTPEEWRYAIEVLRRSASEFAGLGKEVYPLL-KFSYDCLPNDAIRSCFLYCCLYPEDFSIDKRDLIDCWMCEGFLEGD 355 (814)
Q Consensus 277 ~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l-~~sy~~L~~~~~k~~fl~~~~fp~~~~i~~~~li~~w~~~g~~~~~ 355 (814)
++.+.+.-...+. +...-+..-| .-.++.||+ +++.+++-+|+++. -..+|+..-.
T Consensus 239 ~~~~~~q~~~~Ls----------G~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~----f~~eL~~~Lt-------- 295 (894)
T COG2909 239 NNTSAEQSLRGLS----------GAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSR----FNDELCNALT-------- 295 (894)
T ss_pred CCCcHHHHhhhcc----------chHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHH----hhHHHHHHHh--------
Confidence 4444433322111 1111222222 345789999 79999999999864 1233443222
Q ss_pred ccccchhhHHHHHHHHHhcccccc---cCcceeehHHHHHHHHHHHhh
Q 003513 356 KFGTQNQGYYIVGTLVHACLLEEV---EDDQVKMHDVVRDMALWITCE 400 (814)
Q Consensus 356 ~~~~~~~~~~~l~~L~~~~ll~~~---~~~~~~mH~lv~~~a~~i~~~ 400 (814)
.++.+...+++|.+++|+-.. +...|+.|+++.+|.+.--..
T Consensus 296 ---g~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 296 ---GEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred ---cCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 234566779999999998643 578899999999998755443
No 22
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.39 E-value=7.2e-11 Score=129.30 Aligned_cols=294 Identities=15% Similarity=0.084 Sum_probs=173.5
Q ss_pred CCCcccchhHHHHHHHHHHhc---CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHH
Q 003513 68 TEPTVVGLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETI 144 (814)
Q Consensus 68 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 144 (814)
.+..++||++++++|...+.+ +.....+.|+|++|+|||++++.++++.. .....-.++++++....+...++..+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~-~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELE-EIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH-HhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 456799999999999999854 23456788999999999999999999872 22222356777777777788899999
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHhc--cCceEEEEccccCcc------ccccccccC---CC-CcEEEEecCCcccc
Q 003513 145 GKKIGLCNDSWKNKSLEEKAHDIFKTLS--KKKFALLLDDLWERV------DLKKIGVPL---PK-NSAVVFTTRFVDVC 212 (814)
Q Consensus 145 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~------~~~~~~~~~---~~-~~~iiiTtR~~~~~ 212 (814)
+.++..........+.++....+.+.++ +++.+||||+++... .+..+.... .. +..+|.++.+..+.
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchh
Confidence 9988652211123356677777777775 356899999998642 222322211 11 23356666554432
Q ss_pred ccCC-------ccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHc----CCChHHHHHHHHHh--c--c
Q 003513 213 GGME-------ARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKEC----RGLPLALITIGRAM--A--Y 277 (814)
Q Consensus 213 ~~~~-------~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~----~g~Plal~~~~~~l--~--~ 277 (814)
.... ....+.+++++.++..+++..++.... ....-.++....|++.+ |..+.|+.++-... + .
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~-~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGF-YPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhc-ccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 2111 124689999999999999998763211 01111133444444444 55667766654322 1 1
Q ss_pred C---CCHHHHHHHHHHHhhhhcccCCCchhhhhhhhhhccCCCchhhHHHHhhhcCC-C-CCCccChHHHHHH--HHhcC
Q 003513 278 K---KTPEEWRYAIEVLRRSASEFAGLGKEVYPLLKFSYDCLPNDAIRSCFLYCCLY-P-EDFSIDKRDLIDC--WMCEG 350 (814)
Q Consensus 278 ~---~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~~fl~~~~f-p-~~~~i~~~~li~~--w~~~g 350 (814)
. -+.+....+.+.... ....-.+..||. +.|..+..++.. . ....+...++... .++..
T Consensus 266 ~~~~I~~~~v~~a~~~~~~-------------~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKSEI-------------VHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred CCCCcCHHHHHHHHHHHHH-------------HHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 1 245566655554321 122346788988 555555444422 2 1123444444432 22211
Q ss_pred CCCCcccccchhhHHHHHHHHHhcccccc
Q 003513 351 FLEGDKFGTQNQGYYIVGTLVHACLLEEV 379 (814)
Q Consensus 351 ~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 379 (814)
+-. ..........+++.|.+.++|...
T Consensus 332 ~~~--~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 332 LGY--EPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred cCC--CcCcHHHHHHHHHHHHhcCCeEEE
Confidence 100 111234567789999999998754
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.39 E-value=5e-14 Score=155.03 Aligned_cols=298 Identities=21% Similarity=0.229 Sum_probs=191.3
Q ss_pred CCCcccCCCCccCcccEEEEEcccCCCcCCC--CCCCCCcccEEEcccCCCccccchhhccCCcccEEEccCCccccccC
Q 003513 413 GSGLTKAPADVRGWEMVRRLSLMKNSIENLP--TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLP 490 (814)
Q Consensus 413 ~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp 490 (814)
...++-+|..+-.-..+..|++..|.+...| ...++-+|++|++++|.+...|.. +..+.+|+.|+++.| .+.++|
T Consensus 7 ~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~-it~l~~L~~ln~s~n-~i~~vp 84 (1081)
T KOG0618|consen 7 DEQLELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQ-ITLLSHLRQLNLSRN-YIRSVP 84 (1081)
T ss_pred cccCcccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCch-hhhHHHHhhcccchh-hHhhCc
Confidence 3345556555544455777888888776644 345677799999999998887776 788999999999999 899999
Q ss_pred cccccccccCEEEecCCCCcccChhhhcCCCCceeccccccccceeCccccCCCcccceeeccccCcccc----------
Q 003513 491 MGISKLVSLQLLDISNTSVTELPEDLKALVNLKCLNLVWAKELVVVPQQLLSNFSRLRVLRMFATGFLLS---------- 560 (814)
Q Consensus 491 ~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~---------- 560 (814)
.+++++.+|++|.|.+|.+..+|.++..+++|++|++++|++ ..+|.- +..++.++.+..++|.....
T Consensus 85 ~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f-~~~Pl~-i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~ 162 (1081)
T KOG0618|consen 85 SSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHF-GPIPLV-IEVLTAEEELAASNNEKIQRLGQTSIKKLD 162 (1081)
T ss_pred hhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhcc-CCCchh-HHhhhHHHHHhhhcchhhhhhccccchhhh
Confidence 999999999999999999999999999999999999999976 566654 66777777777776622100
Q ss_pred ----hhhhchHHHHcCCCCccEEEEEecChhhHHHHhccccccccceeeeecccCCCCcccc-----cCc-cCCCCCcEE
Q 003513 561 ----SWHENVAEELLGLKYLEVLEISFRSFEAYQTFLSSQKLRSCTHALLLHRFDREESIDV-----ADL-ADLEQLNTL 630 (814)
Q Consensus 561 ----~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-----~~l-~~l~~L~~L 630 (814)
.....++.++..+++ .|++..|.+.. ++++.+..++.+.. ..+ -.-++|+.|
T Consensus 163 l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~----------------~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L 224 (1081)
T KOG0618|consen 163 LRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV----------------LDLSNLANLEVLHCERNQLSELEISGPSLTAL 224 (1081)
T ss_pred hhhhhcccchhcchhhhhe--eeecccchhhh----------------hhhhhccchhhhhhhhcccceEEecCcchhee
Confidence 001222333333333 35555555431 11112221111110 001 012566777
Q ss_pred EeccCCCcceEEecccccccccCCccccCCccEEeeecCccccccc-ccccCCCCcEEEEecChhhHHHhccCCCCCcCC
Q 003513 631 DFYGCGCIKGLKIDCNDMVQKSRQPYVFRSLEKVTVRFCRNLRHLT-FLVFAPNLKSISVRYCDDMEEIISAGEFDDIPE 709 (814)
Q Consensus 631 ~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 709 (814)
+.+.|+..+ +.. .+...+|++++++.. ++..+| |+..+++|+.|.+.. +.+..++.
T Consensus 225 ~a~~n~l~~-~~~-----------~p~p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~-N~l~~lp~--------- 281 (1081)
T KOG0618|consen 225 YADHNPLTT-LDV-----------HPVPLNLQYLDISHN-NLSNLPEWIGACANLEALNANH-NRLVALPL--------- 281 (1081)
T ss_pred eeccCccee-ecc-----------ccccccceeeecchh-hhhcchHHHHhcccceEecccc-hhHHhhHH---------
Confidence 777766442 111 134678999999985 455554 788999999999888 55655532
Q ss_pred ccccCCCCCCCcceeccccccccccccCCCCCCCCccEEEEeCCCCCCCCCC
Q 003513 710 MTGIINSPFAKLQRLELWGLVRLKSIYWKPLPLPRLKVLQVWGCDSLKKLPL 761 (814)
Q Consensus 710 ~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~ 761 (814)
......+|+.|.+..| .++.+|.....+.+|+.|++... +|..+|.
T Consensus 282 ----ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N-~L~~lp~ 327 (1081)
T KOG0618|consen 282 ----RISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSN-NLPSLPD 327 (1081)
T ss_pred ----HHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhc-cccccch
Confidence 2334445555555553 45555554445566666666544 4444444
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.38 E-value=1.2e-14 Score=144.85 Aligned_cols=291 Identities=19% Similarity=0.263 Sum_probs=194.6
Q ss_pred cEEEEcCCCcccCCCCccCcccEEEEEcccCCCcCCC--CCCCCCcccEEEcccCCCccccchhhccCCcccEEEccCCc
Q 003513 407 GFLVYAGSGLTKAPADVRGWEMVRRLSLMKNSIENLP--TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNI 484 (814)
Q Consensus 407 ~~l~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 484 (814)
..+...+.++..+|..+. .....+.|..|.++.+| .|..+++||.|+|++|.++.+.+..|.+++.|-.|-+.++.
T Consensus 49 ~~VdCr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred ceEEccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 567777888999987766 46778889999999998 48999999999999999999999999999999888888855
Q ss_pred cccccCcc-cccccccCEEEecCCCCcccC-hhhhcCCCCceeccccccccceeCccccCCCcccceeeccccCcccc--
Q 003513 485 MLRQLPMG-ISKLVSLQLLDISNTSVTELP-EDLKALVNLKCLNLVWAKELVVVPQQLLSNFSRLRVLRMFATGFLLS-- 560 (814)
Q Consensus 485 ~~~~lp~~-i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~-- 560 (814)
.|+++|+. +++|..|+.|.+..|++..++ ..+..|++|..|.+.+|.. ..++.+.+..+.+++.+.+..+..+..
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcCccccccc
Confidence 99999864 789999999999999998654 5678999999999999865 788887788999999998887764211
Q ss_pred -hhh----hchHHHHcCCCCccEEEEEecChhhHHHHhccccccccceee---eecccCCCCcccccCccCCCCCcEEEe
Q 003513 561 -SWH----ENVAEELLGLKYLEVLEISFRSFEAYQTFLSSQKLRSCTHAL---LLHRFDREESIDVADLADLEQLNTLDF 632 (814)
Q Consensus 561 -~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L---~l~~~~~~~~~~~~~l~~l~~L~~L~l 632 (814)
.|. ...+.+++.........+..+.+....+ ..+.-+++.+ ....|......+...+..+++|++|++
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a----~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnl 281 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDA----RKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNL 281 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccch----hhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEecc
Confidence 010 0111111111111111111111100000 0000011111 111222222333356888999999999
Q ss_pred ccCCCcceEEecccccccccCCccccCCccEEeeecCccccccc--ccccCCCCcEEEEecChhhHHHhccCCCCCcCCc
Q 003513 633 YGCGCIKGLKIDCNDMVQKSRQPYVFRSLEKVTVRFCRNLRHLT--FLVFAPNLKSISVRYCDDMEEIISAGEFDDIPEM 710 (814)
Q Consensus 633 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 710 (814)
++|. ++.+...|+. ....++.|.|..+ ++..+. .+..+..|+.|+|.+ ++|+.+..
T Consensus 282 snN~-i~~i~~~aFe---------~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~---------- 339 (498)
T KOG4237|consen 282 SNNK-ITRIEDGAFE---------GAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYD-NQITTVAP---------- 339 (498)
T ss_pred CCCc-cchhhhhhhc---------chhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecC-CeeEEEec----------
Confidence 8876 5555555554 5778888888874 566654 356788888888888 55555422
Q ss_pred cccCCCCCCCcceecccc
Q 003513 711 TGIINSPFAKLQRLELWG 728 (814)
Q Consensus 711 ~~~~~~~~~~L~~L~L~~ 728 (814)
.......+|.+|.+..
T Consensus 340 --~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 340 --GAFQTLFSLSTLNLLS 355 (498)
T ss_pred --ccccccceeeeeehcc
Confidence 2344445566666553
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.35 E-value=4.8e-13 Score=155.67 Aligned_cols=327 Identities=21% Similarity=0.284 Sum_probs=197.5
Q ss_pred cEEEEcCCCcccCCCCccCcccEEEEEcccCC--CcCCCC--CCCCCcccEEEcccCC-CccccchhhccCCcccEEEcc
Q 003513 407 GFLVYAGSGLTKAPADVRGWEMVRRLSLMKNS--IENLPT--VPTCPHLLTLFLNRNP-LRTITGGFFQSMSCLTVLKMS 481 (814)
Q Consensus 407 ~~l~~~~~~~~~~p~~~~~~~~l~~L~l~~~~--~~~l~~--~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~L~ 481 (814)
+.+...++.+..++.+. ...+++.|-+..|. +..++. |..++.|++|++++|. +..+|.+ ++++-+||||+|+
T Consensus 526 rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~ 603 (889)
T KOG4658|consen 526 RRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLS 603 (889)
T ss_pred eEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-Hhhhhhhhccccc
Confidence 45666666777774443 34579999999886 666765 8899999999999987 5666655 9999999999999
Q ss_pred CCccccccCcccccccccCEEEecCC-CCcccChhhhcCCCCceeccccccccceeCccccCCCcccceeeccccCcccc
Q 003513 482 DNIMLRQLPMGISKLVSLQLLDISNT-SVTELPEDLKALVNLKCLNLVWAKELVVVPQQLLSNFSRLRVLRMFATGFLLS 560 (814)
Q Consensus 482 ~~~~~~~lp~~i~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~ 560 (814)
++ .+..+|.++++|..|.+|++..+ .+..+|.....|.+|++|.+..... ......++.+.+|++|....+...
T Consensus 604 ~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~--~~~~~~l~el~~Le~L~~ls~~~~-- 678 (889)
T KOG4658|consen 604 DT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSAL--SNDKLLLKELENLEHLENLSITIS-- 678 (889)
T ss_pred CC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccc--ccchhhHHhhhcccchhhheeecc--
Confidence 99 89999999999999999999998 4556666667799999999976541 111112444455555544433220
Q ss_pred hhhhchHHHHcCCCCccEEEEEec-ChhhHHHHhccccccccceeeeecccCCCCccc--ccC--cc-CCCCCcEEEecc
Q 003513 561 SWHENVAEELLGLKYLEVLEISFR-SFEAYQTFLSSQKLRSCTHALLLHRFDREESID--VAD--LA-DLEQLNTLDFYG 634 (814)
Q Consensus 561 ~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~--l~-~l~~L~~L~l~~ 634 (814)
.......+..+..|+.+...-. ................+++.|.+..|...+... ... .. .++++..+.+.+
T Consensus 679 --s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~ 756 (889)
T KOG4658|consen 679 --SVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILN 756 (889)
T ss_pred --hhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhc
Confidence 1123344444444442221111 001112223333445678888888887643221 011 11 144677777777
Q ss_pred CCCcceEEecccccccccCCccccCCccEEeeecCccccccc-ccccCCCCcEEEEecChhhHHHhccCCCCCcCCcccc
Q 003513 635 CGCIKGLKIDCNDMVQKSRQPYVFRSLEKVTVRFCRNLRHLT-FLVFAPNLKSISVRYCDDMEEIISAGEFDDIPEMTGI 713 (814)
Q Consensus 635 ~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~ 713 (814)
|..... +.|.. ..++|+.|.+..|..++.+. ....+..++.+.+.. +.+.......+..+++.+. .
T Consensus 757 ~~~~r~--l~~~~---------f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f-~~~~~l~~~~~l~~l~~i~-~ 823 (889)
T KOG4658|consen 757 CHMLRD--LTWLL---------FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPF-NKLEGLRMLCSLGGLPQLY-W 823 (889)
T ss_pred cccccc--cchhh---------ccCcccEEEEecccccccCCCHHHHhhhcccEEecc-cccccceeeecCCCCceeE-e
Confidence 776663 34442 57899999999998877653 333344444322222 2222110000000111110 1
Q ss_pred CCCCCCCcceeccccccccccccCCCCCCCCccEEEEeCC-CCCCCCCCC
Q 003513 714 INSPFAKLQRLELWGLVRLKSIYWKPLPLPRLKVLQVWGC-DSLKKLPLD 762 (814)
Q Consensus 714 ~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C-~~L~~lp~~ 762 (814)
..-.+++|+.+.+..||++.. +|.+.++.+.+| +.+..+|.+
T Consensus 824 ~~l~~~~l~~~~ve~~p~l~~-------~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 824 LPLSFLKLEELIVEECPKLGK-------LPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred cccCccchhheehhcCccccc-------CccccccceeccccceeecCCc
Confidence 233444566666666655554 567778888887 888888864
No 26
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.31 E-value=8.7e-10 Score=119.49 Aligned_cols=294 Identities=16% Similarity=0.169 Sum_probs=173.1
Q ss_pred CCcccchhHHHHHHHHHHhc---CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCC---CeEEEEEECCccCHHHHHH
Q 003513 69 EPTVVGLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDF---DYVIWVVVSKDLQLEKIQE 142 (814)
Q Consensus 69 ~~~~vGr~~~~~~l~~~L~~---~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f---~~~~wv~~~~~~~~~~~~~ 142 (814)
+..++||++++++|...|.. ++....+.|+|++|+|||++++.+++...+..... -.++|+++....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 45799999999999999864 33456899999999999999999998762211111 2467888877777888999
Q ss_pred HHHHHh---CCCCCCCCCCCHHHHHHHHHHHhc--cCceEEEEccccCcc----c-ccccccc-----CC-CCcEEEEec
Q 003513 143 TIGKKI---GLCNDSWKNKSLEEKAHDIFKTLS--KKKFALLLDDLWERV----D-LKKIGVP-----LP-KNSAVVFTT 206 (814)
Q Consensus 143 ~i~~~l---~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~----~-~~~~~~~-----~~-~~~~iiiTt 206 (814)
.|++++ +..... ...+..+....+.+.+. +++++||||+++... + +..+... .+ ....+|++|
T Consensus 94 ~i~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 94 ELANQLRGSGEEVPT-TGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHhhcCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 999988 332111 12244555666666664 467899999998661 1 2222111 11 133455555
Q ss_pred CCccccccCC-------ccceEEeccCCHHhHHHHHHHHhccc--cccCCCChHHHHHHHHHHcCCChHHHHHHHHH-h-
Q 003513 207 RFVDVCGGME-------ARRMFKVACLSDEDAWELFREKVGEE--TIESHHSLPELAQTVAKECRGLPLALITIGRA-M- 275 (814)
Q Consensus 207 R~~~~~~~~~-------~~~~~~l~~L~~~ea~~l~~~~~~~~--~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~-l- 275 (814)
........+. ....+.+++++.+|..+++..++... ....+++..+...+++....|.|..+..+... .
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4443211111 12468999999999999999887421 11122333345556777778888554332211 1
Q ss_pred -c--c---CCCHHHHHHHHHHHhhhhcccCCCchhhhhhhhhhccCCCchhhHHHHhhhcCC--CCCCccChHHHHHHHH
Q 003513 276 -A--Y---KKTPEEWRYAIEVLRRSASEFAGLGKEVYPLLKFSYDCLPNDAIRSCFLYCCLY--PEDFSIDKRDLIDCWM 347 (814)
Q Consensus 276 -~--~---~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~~fl~~~~f--p~~~~i~~~~li~~w~ 347 (814)
+ . .-+.+....+.+.+.. ....-++..|+. +.+..+..++.. .++..+...++...+-
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~~~-------------~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~ 318 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKIEK-------------DRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYK 318 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 1 1 1244455544443321 222345668887 556555444321 1334456665555331
Q ss_pred --hcCCCCCcccccchhhHHHHHHHHHhcccccc
Q 003513 348 --CEGFLEGDKFGTQNQGYYIVGTLVHACLLEEV 379 (814)
Q Consensus 348 --~~g~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 379 (814)
++. +.. ..........+++.|...++++..
T Consensus 319 ~~~~~-~~~-~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 319 EVCED-IGV-DPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHh-cCC-CCCcHHHHHHHHHHHHhcCCeEEE
Confidence 221 111 223456677889999999999864
No 27
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.30 E-value=4.2e-11 Score=126.73 Aligned_cols=277 Identities=13% Similarity=0.101 Sum_probs=159.3
Q ss_pred CCcccchhHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHH
Q 003513 69 EPTVVGLQSQLEQVWRCLVQ----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETI 144 (814)
Q Consensus 69 ~~~~vGr~~~~~~l~~~L~~----~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 144 (814)
-.+|+|+++.++++...+.. +...+.+.|+|++|+||||+|+.+++.. ...+ .++.... ......+..+
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~---~~~~~~~-~~~~~~l~~~ 96 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM---GVNI---RITSGPA-LEKPGDLAAI 96 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh---CCCe---EEEeccc-ccChHHHHHH
Confidence 35699999999999887753 2346788999999999999999999987 3222 1222211 1111222233
Q ss_pred HHHhCCCC----CCCCCCCHHHHHHHHHHHhccCceEEEEccccCccccccccccCCCCcEEEEecCCccccccC--Ccc
Q 003513 145 GKKIGLCN----DSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDVCGGM--EAR 218 (814)
Q Consensus 145 ~~~l~~~~----~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~~~~~iiiTtR~~~~~~~~--~~~ 218 (814)
+..+.... ++...-+ ......+...+.+.+..+|+|+..+...+.. .+++.+-|..|+|...+...+ ...
T Consensus 97 l~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~l~~~~li~at~~~~~l~~~L~sRf~ 172 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIRL---DLPPFTLIGATTRAGLLTSPLRDRFG 172 (328)
T ss_pred HHhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCccccceee---cCCCceEEeecCCcccCCHHHHHhcC
Confidence 33332111 0000001 1122335556666777777777655444332 223356666777755443221 123
Q ss_pred ceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHHHHhccCCCHHHHHHHHHHHhhhhccc
Q 003513 219 RMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIGRAMAYKKTPEEWRYAIEVLRRSASEF 298 (814)
Q Consensus 219 ~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~~l~~~~~~~ 298 (814)
..+++++++.+|..+++.+.+.......+ ++.+..|++.|+|.|..+..+...+. .|.... ....-.
T Consensus 173 ~~~~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~~~~I~- 239 (328)
T PRK00080 173 IVQRLEFYTVEELEKIVKRSARILGVEID---EEGALEIARRSRGTPRIANRLLRRVR------DFAQVK---GDGVIT- 239 (328)
T ss_pred eeeecCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---CCCCCC-
Confidence 46899999999999999998875543333 67789999999999976655554331 222110 000000
Q ss_pred CCCchhhhhhhhhhccCCCchhhHHHHh-hhcCCCCCCccChHHHHHHHHhcCCCCCcccccchhhHHHHH-HHHHhccc
Q 003513 299 AGLGKEVYPLLKFSYDCLPNDAIRSCFL-YCCLYPEDFSIDKRDLIDCWMCEGFLEGDKFGTQNQGYYIVG-TLVHACLL 376 (814)
Q Consensus 299 ~~~~~~i~~~l~~sy~~L~~~~~k~~fl-~~~~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~l~-~L~~~~ll 376 (814)
...-......+...+..|++ ..+..+. ....|+.+ .+..+.+.... .......+..++ .|++.+|+
T Consensus 240 ~~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l----------g~~~~~~~~~~e~~Li~~~li 307 (328)
T PRK00080 240 KEIADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL----------GEERDTIEDVYEPYLIQQGFI 307 (328)
T ss_pred HHHHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH----------CCCcchHHHHhhHHHHHcCCc
Confidence 00001334455667788887 5666664 56666655 45555443321 122334455567 89999999
Q ss_pred ccccC
Q 003513 377 EEVED 381 (814)
Q Consensus 377 ~~~~~ 381 (814)
+....
T Consensus 308 ~~~~~ 312 (328)
T PRK00080 308 QRTPR 312 (328)
T ss_pred ccCCc
Confidence 86643
No 28
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.26 E-value=2.6e-11 Score=122.73 Aligned_cols=193 Identities=19% Similarity=0.203 Sum_probs=104.1
Q ss_pred ccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHH--------
Q 003513 72 VVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQET-------- 143 (814)
Q Consensus 72 ~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~-------- 143 (814)
|+||++++++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+.. ...-..++|+..........+...
T Consensus 1 F~gR~~el~~l~~~l~~~-~~~~~~l~G~rg~GKTsLl~~~~~~~---~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG-PSQHILLYGPRGSGKTSLLKEFINEL---KEKGYKVVYIDFLEESNESSLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH---SSEEEEEESTTSSHHHHHHHHHHHC---T--EECCCHHCCTTBSHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhh-cCcEEEEEcCCcCCHHHHHHHHHHHh---hhcCCcEEEEecccchhhhHHHHHHHHHHHHH
Confidence 799999999999988775 56899999999999999999999987 222224455544333322221111
Q ss_pred -HHHHhCC--CCCC------CCCCCHHHHHHHHHHHhc--cCceEEEEccccCcc-ccc---c-------ccccC--CCC
Q 003513 144 -IGKKIGL--CNDS------WKNKSLEEKAHDIFKTLS--KKKFALLLDDLWERV-DLK---K-------IGVPL--PKN 199 (814)
Q Consensus 144 -i~~~l~~--~~~~------~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~-~~~---~-------~~~~~--~~~ 199 (814)
+...++. .... ............+.+.++ +++++||+||++... ... . +.... ..+
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 156 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN 156 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC
Confidence 1111211 1000 011222333444445443 356999999997665 111 1 11111 124
Q ss_pred cEEEEecCCccccc--------cCCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHH
Q 003513 200 SAVVFTTRFVDVCG--------GMEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALIT 270 (814)
Q Consensus 200 ~~iiiTtR~~~~~~--------~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 270 (814)
..+|++.-...... ..+....+.+++|+.+|+++++...+... ... +.-++..++|+..+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 44555544333321 12333459999999999999999976433 122 22366779999999999998864
No 29
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.26 E-value=3.7e-10 Score=118.94 Aligned_cols=277 Identities=16% Similarity=0.152 Sum_probs=159.7
Q ss_pred CcccchhHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHH
Q 003513 70 PTVVGLQSQLEQVWRCLVQ----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIG 145 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~----~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 145 (814)
..|||+++.+++|..++.. .+....+.++|++|+|||+||+.+++.. ...+ ..+..........+. ..+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~l~-~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM---GVNL---KITSGPALEKPGDLA-AIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCE---EEeccchhcCchhHH-HHH
Confidence 3689999999999988863 2245678999999999999999999987 3222 122221111222222 222
Q ss_pred HHhCCCC----CCCCCCCHHHHHHHHHHHhccCceEEEEccccCccccccccccCCCCcEEEEecCCccccccC--Cccc
Q 003513 146 KKIGLCN----DSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDVCGGM--EARR 219 (814)
Q Consensus 146 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~~~~~iiiTtR~~~~~~~~--~~~~ 219 (814)
..++... ++...-+ ......+...+.+.+..+|+|+..+...+.. +.++.+-|.+||+...+...+ ....
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~li~~t~~~~~l~~~l~sR~~~ 152 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DLPPFTLVGATTRAGMLTSPLRDRFGI 152 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cCCCeEEEEecCCccccCHHHHhhcce
Confidence 2222111 1101111 1233456667777777788887666554443 233456677788865443221 1234
Q ss_pred eEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHHHHhccCCCHHHHHHHHHHHhhhhcccC
Q 003513 220 MFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIGRAMAYKKTPEEWRYAIEVLRRSASEFA 299 (814)
Q Consensus 220 ~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~~l~~~~~~~~ 299 (814)
.+++++++.+|..+++.+.+.......+ ++....|++.|+|.|..+..++..+. ..+. ..+..... .
T Consensus 153 ~~~l~~l~~~e~~~il~~~~~~~~~~~~---~~al~~ia~~~~G~pR~~~~ll~~~~--------~~a~-~~~~~~it-~ 219 (305)
T TIGR00635 153 ILRLEFYTVEELAEIVSRSAGLLNVEIE---PEAALEIARRSRGTPRIANRLLRRVR--------DFAQ-VRGQKIIN-R 219 (305)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHHhCCCcchHHHHHHHHH--------HHHH-HcCCCCcC-H
Confidence 6899999999999999988865432222 67788999999999987765554321 1100 00000000 0
Q ss_pred CCchhhhhhhhhhccCCCchhhHHHHh-hhcCCCCCCccChHHHHHHHHhcCCCCCcccccchhhHHHHH-HHHHhcccc
Q 003513 300 GLGKEVYPLLKFSYDCLPNDAIRSCFL-YCCLYPEDFSIDKRDLIDCWMCEGFLEGDKFGTQNQGYYIVG-TLVHACLLE 377 (814)
Q Consensus 300 ~~~~~i~~~l~~sy~~L~~~~~k~~fl-~~~~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~l~-~L~~~~ll~ 377 (814)
..-......+...|..+++ +.+..+. ..+.+..+ .+..+++.... ..........++ .|++++|++
T Consensus 220 ~~v~~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~l----------g~~~~~~~~~~e~~Li~~~li~ 287 (305)
T TIGR00635 220 DIALKALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAAL----------GEDADTIEDVYEPYLLQIGFLQ 287 (305)
T ss_pred HHHHHHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHHh----------CCCcchHHHhhhHHHHHcCCcc
Confidence 0001223335667888888 5666665 44666543 34444433221 122345556677 699999998
Q ss_pred cccCc
Q 003513 378 EVEDD 382 (814)
Q Consensus 378 ~~~~~ 382 (814)
....+
T Consensus 288 ~~~~g 292 (305)
T TIGR00635 288 RTPRG 292 (305)
T ss_pred cCCch
Confidence 65433
No 30
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.26 E-value=1e-09 Score=113.46 Aligned_cols=177 Identities=14% Similarity=0.191 Sum_probs=112.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKT 170 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 170 (814)
+..++.|+|++|+||||+++.+++.. .. ... .++|+ +....+..+++..|+..++.... ..+.......+.+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~~ 114 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELEDF 114 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHHH
Confidence 35689999999999999999999987 21 111 22333 33345677889999999887642 22223333333332
Q ss_pred h-----ccCceEEEEccccCcc--ccccc---cccCC-C--CcEEEEecCCccccccC----------CccceEEeccCC
Q 003513 171 L-----SKKKFALLLDDLWERV--DLKKI---GVPLP-K--NSAVVFTTRFVDVCGGM----------EARRMFKVACLS 227 (814)
Q Consensus 171 l-----~~~~~LlVlDdv~~~~--~~~~~---~~~~~-~--~~~iiiTtR~~~~~~~~----------~~~~~~~l~~L~ 227 (814)
+ .+++.++|+||++... .++.+ ..... . ...|++|.... ....+ .....+.+++++
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~ 193 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLD 193 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCC
Confidence 2 5688999999998752 22222 11111 1 23455555432 11110 113467899999
Q ss_pred HHhHHHHHHHHhcccccc-CCCChHHHHHHHHHHcCCChHHHHHHHHHh
Q 003513 228 DEDAWELFREKVGEETIE-SHHSLPELAQTVAKECRGLPLALITIGRAM 275 (814)
Q Consensus 228 ~~ea~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 275 (814)
.+|..+++...+...... ...-.++..+.|++.++|.|..|..++..+
T Consensus 194 ~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 194 REETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999998876432211 112336888999999999999999998766
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.21 E-value=3.5e-12 Score=127.65 Aligned_cols=247 Identities=19% Similarity=0.216 Sum_probs=172.9
Q ss_pred cEEEEcCCCcccCCC-CccCcccEEEEEcccCCCcCCC--CCCCCCcccEEEccc-CCCccccchhhccCCcccEEEccC
Q 003513 407 GFLVYAGSGLTKAPA-DVRGWEMVRRLSLMKNSIENLP--TVPTCPHLLTLFLNR-NPLRTITGGFFQSMSCLTVLKMSD 482 (814)
Q Consensus 407 ~~l~~~~~~~~~~p~-~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~ 482 (814)
.-+.++.++++.+|+ .|+.+++||+|+|++|.++.+. .|.+++.|.+|-+.+ |.++.++...|+++..|+.|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 456778889999986 5888999999999999999875 588999988888877 889999999999999999999999
Q ss_pred Ccccccc-CcccccccccCEEEecCCCCcccCh-hhhcCCCCceecccccccc------------ceeCccccCCCcccc
Q 003513 483 NIMLRQL-PMGISKLVSLQLLDISNTSVTELPE-DLKALVNLKCLNLVWAKEL------------VVVPQQLLSNFSRLR 548 (814)
Q Consensus 483 ~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l------------~~~p~~~i~~l~~L~ 548 (814)
| .+..+ ...+..+++|..|.+..|.+..++. .+..+..++++.+.-|... ...|.. ++.++...
T Consensus 150 n-~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie-tsgarc~~ 227 (498)
T KOG4237|consen 150 N-HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE-TSGARCVS 227 (498)
T ss_pred h-hhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh-cccceecc
Confidence 8 66654 4567889999999999999998887 6788889999988766521 111211 22222222
Q ss_pred eeeccccCccc--------------------c-hhhhchHHHHcCCCCccEEEEEecChhhHHHHhccccccccceeeee
Q 003513 549 VLRMFATGFLL--------------------S-SWHENVAEELLGLKYLEVLEISFRSFEAYQTFLSSQKLRSCTHALLL 607 (814)
Q Consensus 549 ~L~l~~~~~~~--------------------~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l 607 (814)
-..+....+.+ . .........+..+++|++|++++|.++.++.- +.+-...++.|.|
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~--aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG--AFEGAAELQELYL 305 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh--hhcchhhhhhhhc
Confidence 22222111100 0 11222344588999999999999998877641 1122236777777
Q ss_pred cccCCCCcccccCccCCCCCcEEEeccCCCcceEEecccccccccCCccccCCccEEeeec
Q 003513 608 HRFDREESIDVADLADLEQLNTLDFYGCGCIKGLKIDCNDMVQKSRQPYVFRSLEKVTVRF 668 (814)
Q Consensus 608 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~ 668 (814)
..+. ++.+.-..+..+.+|+.|+|++|. ++.+.+..+ ..+.+|.+|.|-.
T Consensus 306 ~~N~-l~~v~~~~f~~ls~L~tL~L~~N~-it~~~~~aF---------~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 306 TRNK-LEFVSSGMFQGLSGLKTLSLYDNQ-ITTVAPGAF---------QTLFSLSTLNLLS 355 (498)
T ss_pred Ccch-HHHHHHHhhhccccceeeeecCCe-eEEEecccc---------cccceeeeeehcc
Confidence 6654 344444578888999999999987 443333332 2466788888754
No 32
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.21 E-value=5.9e-13 Score=134.24 Aligned_cols=309 Identities=17% Similarity=0.148 Sum_probs=145.6
Q ss_pred CcccEEEcccCCCccc--cchhhccCCcccEEEccCCcccccc--CcccccccccCEEEecCC-CCcc--cChhhhcCCC
Q 003513 449 PHLLTLFLNRNPLRTI--TGGFFQSMSCLTVLKMSDNIMLRQL--PMGISKLVSLQLLDISNT-SVTE--LPEDLKALVN 521 (814)
Q Consensus 449 ~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~l--p~~i~~l~~L~~L~l~~~-~l~~--lp~~i~~l~~ 521 (814)
..|+.|.+.++.-... ...+..+++++..|++.+|..+++- -+.-..+++|++|++..| .++. +......+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3567777777752111 2234556777777777777544431 112235666777777765 5552 2223345666
Q ss_pred CceeccccccccceeC-ccccCCCcccceeeccccCcccchhhhchHHHHcCCCCccEEEEEecChhhHHHHhccccccc
Q 003513 522 LKCLNLVWAKELVVVP-QQLLSNFSRLRVLRMFATGFLLSSWHENVAEELLGLKYLEVLEISFRSFEAYQTFLSSQKLRS 600 (814)
Q Consensus 522 L~~L~l~~~~~l~~~p-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 600 (814)
|++|+++.|..+..-. +.....+.+|+.+...+| .....+.+......+.
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC-----------------------------~e~~le~l~~~~~~~~ 268 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC-----------------------------LELELEALLKAAAYCL 268 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhccc-----------------------------ccccHHHHHHHhccCh
Confidence 7777777665433200 111233444444444443 2222333332222222
Q ss_pred cceeeeecccCCCCcccccCcc-CCCCCcEEEeccCCCcceEEecccccccccCCccccCCccEEeeecCccccccc--c
Q 003513 601 CTHALLLHRFDREESIDVADLA-DLEQLNTLDFYGCGCIKGLKIDCNDMVQKSRQPYVFRSLEKVTVRFCRNLRHLT--F 677 (814)
Q Consensus 601 ~l~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~ 677 (814)
-+..+++..|..+++..+..+. .+..|+.|+.++|..+.+....... ....+|+.|.++.|..+++.. .
T Consensus 269 ~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg--------~~~~~L~~l~l~~c~~fsd~~ft~ 340 (483)
T KOG4341|consen 269 EILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALG--------QHCHNLQVLELSGCQQFSDRGFTM 340 (483)
T ss_pred HhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh--------cCCCceEEEeccccchhhhhhhhh
Confidence 2333333344433333322222 2345555555555554432221111 234556666666665544332 1
Q ss_pred c-ccCCCCcEEEEecChhhHHH-hccCCCCCcCCccccCCCCCCCcceeccccccccccc-----cCCCCCCCCccEEEE
Q 003513 678 L-VFAPNLKSISVRYCDDMEEI-ISAGEFDDIPEMTGIINSPFAKLQRLELWGLVRLKSI-----YWKPLPLPRLKVLQV 750 (814)
Q Consensus 678 l-~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l-----~~~~~~~~~L~~L~i 750 (814)
+ ...+.|+.|++..|..+.+- .. .....+|.|+.|.+++|...++. ...-.++..|+.+.+
T Consensus 341 l~rn~~~Le~l~~e~~~~~~d~tL~------------sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL 408 (483)
T KOG4341|consen 341 LGRNCPHLERLDLEECGLITDGTLA------------SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLEL 408 (483)
T ss_pred hhcCChhhhhhcccccceehhhhHh------------hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeee
Confidence 1 23456666666665544333 11 23345666666666666555533 222233555666666
Q ss_pred eCCCCCCCCCCCCCC--CCCcceEEEechhhhc-cCcccchhhhc-ccccccccceeccC
Q 003513 751 WGCDSLKKLPLDSNS--ANGRRILIRGVEDWWR-RLQWEDEATQN-AFRLCFQPLLRIGG 806 (814)
Q Consensus 751 ~~C~~L~~lp~~~~~--~~l~~~~i~~~~~~~~-~l~~~~~~~~~-~~~~~~~~~~~~~~ 806 (814)
.+||.++.--+..+. .+++.+++.+|....+ ..+--....++ ..+.+|-|.+|+++
T Consensus 409 ~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a~~t~p~~ 468 (483)
T KOG4341|consen 409 DNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFAPVTPPGF 468 (483)
T ss_pred cCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhccCCCCccc
Confidence 666666553332222 4556666666665542 11111122222 24566766666543
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.15 E-value=1.1e-11 Score=131.97 Aligned_cols=139 Identities=22% Similarity=0.175 Sum_probs=73.9
Q ss_pred CCCCcccEEEcccCCCccc----cchhhccCCcccEEEccCCcccc-------ccCcccccccccCEEEecCCCCc-ccC
Q 003513 446 PTCPHLLTLFLNRNPLRTI----TGGFFQSMSCLTVLKMSDNIMLR-------QLPMGISKLVSLQLLDISNTSVT-ELP 513 (814)
Q Consensus 446 ~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~~~~~~-------~lp~~i~~l~~L~~L~l~~~~l~-~lp 513 (814)
..+.+|+.|+++++.++.. ....+...+.|++|+++++ .+. .++..+..+++|++|++++|.+. ..+
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 3445577777777765322 1222455666777777766 222 12334555667777777776665 333
Q ss_pred hhhhcCCC---Cceeccccccccc----eeCccccCCC-cccceeeccccCcccchhhhchHHHHcCCCCccEEEEEecC
Q 003513 514 EDLKALVN---LKCLNLVWAKELV----VVPQQLLSNF-SRLRVLRMFATGFLLSSWHENVAEELLGLKYLEVLEISFRS 585 (814)
Q Consensus 514 ~~i~~l~~---L~~L~l~~~~~l~----~~p~~~i~~l-~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 585 (814)
..+..+.+ |++|++++|.... .+... +..+ ++|+.|++.+|.+.. .........+..+++|++|+++.|.
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~-~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEG-ASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHH-HHhCCCCceEEEcCCCcCCc-hHHHHHHHHHHhCCCcCEEECcCCC
Confidence 44444443 7777777665421 11111 3444 666777776666511 1112334455555666666666665
Q ss_pred hh
Q 003513 586 FE 587 (814)
Q Consensus 586 ~~ 587 (814)
+.
T Consensus 177 l~ 178 (319)
T cd00116 177 IG 178 (319)
T ss_pred Cc
Confidence 44
No 34
>PF05729 NACHT: NACHT domain
Probab=99.06 E-value=1.3e-09 Score=103.73 Aligned_cols=139 Identities=19% Similarity=0.313 Sum_probs=89.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCC---CCeEEEEEECCccCHH---HHHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 003513 93 GIIGLYGMGGVGKTTLLTQINNKFVDNPKD---FDYVIWVVVSKDLQLE---KIQETIGKKIGLCNDSWKNKSLEEKAHD 166 (814)
Q Consensus 93 ~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~---f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 166 (814)
+++.|+|.+|+||||+++.++.+....... +..++|+......... .+...|........ ..... .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~---~ 72 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-----APIEE---L 72 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-----hhhHH---H
Confidence 579999999999999999999887332211 4567777765543322 34444444432211 11111 2
Q ss_pred HHHHh-ccCceEEEEccccCccc-------------ccccccc-CCCCcEEEEecCCccc---cccCCccceEEeccCCH
Q 003513 167 IFKTL-SKKKFALLLDDLWERVD-------------LKKIGVP-LPKNSAVVFTTRFVDV---CGGMEARRMFKVACLSD 228 (814)
Q Consensus 167 l~~~l-~~~~~LlVlDdv~~~~~-------------~~~~~~~-~~~~~~iiiTtR~~~~---~~~~~~~~~~~l~~L~~ 228 (814)
+...+ +.+++++|+|++++... +..+... .+.+.+++||+|.... .........+++.+|++
T Consensus 73 ~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 73 LQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSE 152 (166)
T ss_pred HHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCH
Confidence 22222 56899999999976532 1122221 3558999999998765 23334446899999999
Q ss_pred HhHHHHHHHHh
Q 003513 229 EDAWELFREKV 239 (814)
Q Consensus 229 ~ea~~l~~~~~ 239 (814)
++..+++.++.
T Consensus 153 ~~~~~~~~~~f 163 (166)
T PF05729_consen 153 EDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHh
Confidence 99999998775
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.05 E-value=1.7e-10 Score=122.90 Aligned_cols=256 Identities=21% Similarity=0.118 Sum_probs=123.9
Q ss_pred cccEEEEEcccCCCcC-----CC-CCCCCCcccEEEcccCCCcc------ccchhhccCCcccEEEccCCccccccCccc
Q 003513 426 WEMVRRLSLMKNSIEN-----LP-TVPTCPHLLTLFLNRNPLRT------ITGGFFQSMSCLTVLKMSDNIMLRQLPMGI 493 (814)
Q Consensus 426 ~~~l~~L~l~~~~~~~-----l~-~~~~l~~L~~L~l~~~~~~~------~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i 493 (814)
+..++.|.+.++.+.. ++ .+...++|+.|+++++.+.. .....+..+++|++|++++|......+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 3445566666555422 11 23344556666666555431 111234456666666666663322333334
Q ss_pred ccccc---cCEEEecCCCCc-----ccChhhhcC-CCCceeccccccccc----eeCccccCCCcccceeeccccCcccc
Q 003513 494 SKLVS---LQLLDISNTSVT-----ELPEDLKAL-VNLKCLNLVWAKELV----VVPQQLLSNFSRLRVLRMFATGFLLS 560 (814)
Q Consensus 494 ~~l~~---L~~L~l~~~~l~-----~lp~~i~~l-~~L~~L~l~~~~~l~----~~p~~~i~~l~~L~~L~l~~~~~~~~ 560 (814)
..+.+ |++|++++|++. .+...+..+ ++|+.|++++|.... .++.. +..+++|++|++.+|.+. .
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~-~ 179 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELNLANNGIG-D 179 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEECcCCCCc-h
Confidence 33333 666666666554 122334445 666666666665431 11211 344556666666665541 1
Q ss_pred hhhhchHHHHcCCCCccEEEEEecChhhHH--HHhccccccccceeeeecccCCCCcccccCcc-----CCCCCcEEEec
Q 003513 561 SWHENVAEELLGLKYLEVLEISFRSFEAYQ--TFLSSQKLRSCTHALLLHRFDREESIDVADLA-----DLEQLNTLDFY 633 (814)
Q Consensus 561 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~-----~l~~L~~L~l~ 633 (814)
......+..+..+++|+.|++++|.+.... .+.......++|+.|.++++.- ....+..+. ..++|++|+++
T Consensus 180 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l-~~~~~~~l~~~~~~~~~~L~~L~l~ 258 (319)
T cd00116 180 AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL-TDAGAAALASALLSPNISLLTLSLS 258 (319)
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC-chHHHHHHHHHHhccCCCceEEEcc
Confidence 111223334445556666666666543221 2222233345566666666542 211111111 24788999998
Q ss_pred cCCCcceEEecccccccccCCccccCCccEEeeecCccccccc------ccccC-CCCcEEEEec
Q 003513 634 GCGCIKGLKIDCNDMVQKSRQPYVFRSLEKVTVRFCRNLRHLT------FLVFA-PNLKSISVRY 691 (814)
Q Consensus 634 ~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~------~l~~l-~~L~~L~l~~ 691 (814)
+|.... . .... .......+++|+.++++++. ++.-+ .+... +.|++|++.+
T Consensus 259 ~n~i~~-~--~~~~---l~~~~~~~~~L~~l~l~~N~-l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 259 CNDITD-D--GAKD---LAEVLAEKESLLELDLRGNK-FGEEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred CCCCCc-H--HHHH---HHHHHhcCCCccEEECCCCC-CcHHHHHHHHHHHhhcCCchhhcccCC
Confidence 886321 0 0000 01112345789999998864 44221 12233 5777776654
No 36
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.01 E-value=1.8e-08 Score=102.58 Aligned_cols=221 Identities=18% Similarity=0.144 Sum_probs=125.7
Q ss_pred cccchhHHH--HHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCc-cCHHHHHHHHHHH
Q 003513 71 TVVGLQSQL--EQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKD-LQLEKIQETIGKK 147 (814)
Q Consensus 71 ~~vGr~~~~--~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~ 147 (814)
++||.+..+ ..++..+.+.+.+....+||++|+||||||+.++... ...|.. ++.. .++.++.
T Consensus 25 e~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~-----~sAv~~gvkdlr------ 90 (436)
T COG2256 25 EVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFEA-----LSAVTSGVKDLR------ 90 (436)
T ss_pred HhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCceEE-----eccccccHHHHH------
Confidence 456655433 1222222233378888999999999999999999987 555532 2221 1222222
Q ss_pred hCCCCCCCCCCCHHHHHHHHHH-HhccCceEEEEccccCc--cccccccccCCCCcEEEE--ecCCcccc---ccCCccc
Q 003513 148 IGLCNDSWKNKSLEEKAHDIFK-TLSKKKFALLLDDLWER--VDLKKIGVPLPKNSAVVF--TTRFVDVC---GGMEARR 219 (814)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~--~~~~~~~~~~~~~~~iii--TtR~~~~~---~~~~~~~ 219 (814)
+.++.-++ ...+++.+|++|.|..- .+-+.+......|.-|+| ||.++... .......
T Consensus 91 --------------~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~ 156 (436)
T COG2256 91 --------------EIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRAR 156 (436)
T ss_pred --------------HHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhh
Confidence 22222222 23478999999999743 555556555555777776 66666541 2223467
Q ss_pred eEEeccCCHHhHHHHHHHHhccccccC---CC-ChHHHHHHHHHHcCCChHHHHHH---HHHhccCC---CHHHHHHHHH
Q 003513 220 MFKVACLSDEDAWELFREKVGEETIES---HH-SLPELAQTVAKECRGLPLALITI---GRAMAYKK---TPEEWRYAIE 289 (814)
Q Consensus 220 ~~~l~~L~~~ea~~l~~~~~~~~~~~~---~~-~~~~~~~~i~~~~~g~Plal~~~---~~~l~~~~---~~~~w~~~l~ 289 (814)
++++++|+.+|..+++.+.+-...... .. -.++....++..++|=-.++-.. +..+.... +.+..++.++
T Consensus 157 vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~ 236 (436)
T COG2256 157 VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQ 236 (436)
T ss_pred eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHh
Confidence 899999999999999998443221111 11 12456678888988865443222 22222211 2333333332
Q ss_pred HHhhhhcccCCCchhhhhhhhhhccCCCch
Q 003513 290 VLRRSASEFAGLGKEVYPLLKFSYDCLPND 319 (814)
Q Consensus 290 ~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~ 319 (814)
.-........+...++.++|.-|...-.++
T Consensus 237 ~~~~~~Dk~gD~hYdliSA~hKSvRGSD~d 266 (436)
T COG2256 237 RRSARFDKDGDAHYDLISALHKSVRGSDPD 266 (436)
T ss_pred hhhhccCCCcchHHHHHHHHHHhhccCCcC
Confidence 221111222222346778888888877774
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.01 E-value=2.2e-11 Score=127.49 Aligned_cols=190 Identities=28% Similarity=0.355 Sum_probs=143.1
Q ss_pred cEEEEcCCCcccCCCCc--cCcccEEEEEcccCCCcCCC-CCCCCCcccEEEcccCCCccccchhhccCCcccEEEccCC
Q 003513 407 GFLVYAGSGLTKAPADV--RGWEMVRRLSLMKNSIENLP-TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDN 483 (814)
Q Consensus 407 ~~l~~~~~~~~~~p~~~--~~~~~l~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 483 (814)
..+.+.+..++.+|..- ..+......+++.|.+..+| ....|..|..+.++.|.+..++.. +.++..|.+|||+.|
T Consensus 53 g~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~N 131 (722)
T KOG0532|consen 53 GRLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSN 131 (722)
T ss_pred cccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccc
Confidence 34555666666665322 23445567788888888887 466778888899999888888776 788999999999999
Q ss_pred ccccccCcccccccccCEEEecCCCCcccChhhhcCCCCceeccccccccceeCccccCCCcccceeeccccCcccchhh
Q 003513 484 IMLRQLPMGISKLVSLQLLDISNTSVTELPEDLKALVNLKCLNLVWAKELVVVPQQLLSNFSRLRVLRMFATGFLLSSWH 563 (814)
Q Consensus 484 ~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~ 563 (814)
.+..+|..++.|+ |+.|-+++|+++.+|..++.+..|.+||.+.|.. ..+|.. ++.+.+|+.|++..|.+
T Consensus 132 -qlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei-~slpsq-l~~l~slr~l~vrRn~l------ 201 (722)
T KOG0532|consen 132 -QLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI-QSLPSQ-LGYLTSLRDLNVRRNHL------ 201 (722)
T ss_pred -hhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhh-hhchHH-hhhHHHHHHHHHhhhhh------
Confidence 8888898888876 8999999999999999999888999999988864 677766 78899999999888776
Q ss_pred hchHHHHcCCCCccEEEEEecChhhHHHHhccccccccceeeeecccC
Q 003513 564 ENVAEELLGLKYLEVLEISFRSFEAYQTFLSSQKLRSCTHALLLHRFD 611 (814)
Q Consensus 564 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~ 611 (814)
..+++++..|+ |..|++++|.+..++.-+. .+++|+.|.|.+++
T Consensus 202 ~~lp~El~~Lp-Li~lDfScNkis~iPv~fr---~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 202 EDLPEELCSLP-LIRLDFSCNKISYLPVDFR---KMRHLQVLQLENNP 245 (722)
T ss_pred hhCCHHHhCCc-eeeeecccCceeecchhhh---hhhhheeeeeccCC
Confidence 56777777554 7888888888776653222 23355666665543
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=3.3e-10 Score=105.74 Aligned_cols=105 Identities=28% Similarity=0.384 Sum_probs=25.6
Q ss_pred CcccEEEEEcccCCCcCCCCCC-CCCcccEEEcccCCCccccchhhccCCcccEEEccCCccccccCccc-ccccccCEE
Q 003513 425 GWEMVRRLSLMKNSIENLPTVP-TCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGI-SKLVSLQLL 502 (814)
Q Consensus 425 ~~~~l~~L~l~~~~~~~l~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i-~~l~~L~~L 502 (814)
+..+++.|+|.+|.+..+..+. .+.+|+.|++++|.++.+.. +..+++|++|++++| .++.++..+ ..+++|++|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCccccchHHhCCcCCEE
Confidence 3344556666666655555444 35555555555555554432 445555555555555 455544333 235555555
Q ss_pred EecCCCCcccC--hhhhcCCCCceeccccccc
Q 003513 503 DISNTSVTELP--EDLKALVNLKCLNLVWAKE 532 (814)
Q Consensus 503 ~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~ 532 (814)
++++|+|..+- ..+..+++|+.|++.+|+.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 55555554321 2344555555555555543
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.98 E-value=7.6e-10 Score=103.32 Aligned_cols=124 Identities=26% Similarity=0.311 Sum_probs=57.8
Q ss_pred cccEEEEcCCCcccCCCCcc-CcccEEEEEcccCCCcCCCCCCCCCcccEEEcccCCCccccchhhccCCcccEEEccCC
Q 003513 405 KEGFLVYAGSGLTKAPADVR-GWEMVRRLSLMKNSIENLPTVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDN 483 (814)
Q Consensus 405 ~~~~l~~~~~~~~~~p~~~~-~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 483 (814)
+..-+...++.+..+ ..+. .+.+++.|++++|.+..++.+..+++|++|++++|.++.+.+.+...+++|++|+|++|
T Consensus 20 ~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 20 KLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN 98 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS
T ss_pred ccccccccccccccc-cchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC
Confidence 456688889999888 5666 57899999999999999999999999999999999999887654567999999999999
Q ss_pred ccccccC--cccccccccCEEEecCCCCcccC----hhhhcCCCCceeccccc
Q 003513 484 IMLRQLP--MGISKLVSLQLLDISNTSVTELP----EDLKALVNLKCLNLVWA 530 (814)
Q Consensus 484 ~~~~~lp--~~i~~l~~L~~L~l~~~~l~~lp----~~i~~l~~L~~L~l~~~ 530 (814)
.+..+- ..+..+++|++|++.+|.+...+ .-+..+++|+.||-...
T Consensus 99 -~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 99 -KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp ----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred -cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 666543 35678999999999999888554 24678899999986543
No 40
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.98 E-value=2e-11 Score=123.33 Aligned_cols=285 Identities=15% Similarity=0.150 Sum_probs=155.8
Q ss_pred cEEEEEcccCCCcCCCC----CCCCCcccEEEcccCC-Cccc-cchhhccCCcccEEEccCCccccccC--ccccccccc
Q 003513 428 MVRRLSLMKNSIENLPT----VPTCPHLLTLFLNRNP-LRTI-TGGFFQSMSCLTVLKMSDNIMLRQLP--MGISKLVSL 499 (814)
Q Consensus 428 ~l~~L~l~~~~~~~l~~----~~~l~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~L~~~~~~~~lp--~~i~~l~~L 499 (814)
.++.|++.++.-....+ -..|++++.|.+.+|. +++. ..++-..+++|++|+|..|..++... .....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 57888888876544432 3679999999999987 3322 23334579999999999987776532 234578999
Q ss_pred CEEEecCC-CCcc--cChhhhcCCCCceeccccccccceeCcccc----CCCcccceeeccccCcccchhhhchHHHHcC
Q 003513 500 QLLDISNT-SVTE--LPEDLKALVNLKCLNLVWAKELVVVPQQLL----SNFSRLRVLRMFATGFLLSSWHENVAEELLG 572 (814)
Q Consensus 500 ~~L~l~~~-~l~~--lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i----~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 572 (814)
++|++++| .++. +..-...+.+|+.+.+.||.. .+...+ +.+.-+..+++..|..+.+ ......-..
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e---~~le~l~~~~~~~~~i~~lnl~~c~~lTD---~~~~~i~~~ 292 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE---LELEALLKAAAYCLEILKLNLQHCNQLTD---EDLWLIACG 292 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhccccc---ccHHHHHHHhccChHhhccchhhhccccc---hHHHHHhhh
Confidence 99999999 6663 433445667788888888743 232222 2233344455445533211 111111122
Q ss_pred CCCccEEEEEecChhhHHHHhccccccccceeeeecccCCCCcccccCcc-CCCCCcEEEeccCCCcceEEecccccccc
Q 003513 573 LKYLEVLEISFRSFEAYQTFLSSQKLRSCTHALLLHRFDREESIDVADLA-DLEQLNTLDFYGCGCIKGLKIDCNDMVQK 651 (814)
Q Consensus 573 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~~ 651 (814)
+..|+. +..++|...++..+..++ +..+|+.|-+++|..+++.......
T Consensus 293 c~~lq~--------------------------l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~---- 342 (483)
T KOG4341|consen 293 CHALQV--------------------------LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG---- 342 (483)
T ss_pred hhHhhh--------------------------hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh----
Confidence 334444 444444444444433433 3456666666666655433222221
Q ss_pred cCCccccCCccEEeeecCccccccc---ccccCCCCcEEEEecChhhHHHhccCCCCCcCCccccCCCCCCCcceecccc
Q 003513 652 SRQPYVFRSLEKVTVRFCRNLRHLT---FLVFAPNLKSISVRYCDDMEEIISAGEFDDIPEMTGIINSPFAKLQRLELWG 728 (814)
Q Consensus 652 ~~~~~~~~~L~~L~L~~c~~l~~l~---~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 728 (814)
.+.+.|+.+++..|....+-. .-..+|.|+.|.++.|..+++... .++. ........|+.|.|.+
T Consensus 343 ----rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi-------~~l~-~~~c~~~~l~~lEL~n 410 (483)
T KOG4341|consen 343 ----RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGI-------RHLS-SSSCSLEGLEVLELDN 410 (483)
T ss_pred ----cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhh-------hhhh-hccccccccceeeecC
Confidence 345566666666665433321 112456666666666665554411 0000 1223445566666666
Q ss_pred ccccccccC-CCCCCCCccEEEEeCCCCCCCCC
Q 003513 729 LVRLKSIYW-KPLPLPRLKVLQVWGCDSLKKLP 760 (814)
Q Consensus 729 ~~~L~~l~~-~~~~~~~L~~L~i~~C~~L~~lp 760 (814)
|+.+++-.. ....+++|+.+++.+|....+-+
T Consensus 411 ~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 411 CPLITDATLEHLSICRNLERIELIDCQDVTKEA 443 (483)
T ss_pred CCCchHHHHHHHhhCcccceeeeechhhhhhhh
Confidence 665553221 22335666666666665555443
No 41
>PRK06893 DNA replication initiation factor; Validated
Probab=98.96 E-value=8.1e-09 Score=102.95 Aligned_cols=152 Identities=16% Similarity=0.239 Sum_probs=94.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKT 170 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 170 (814)
..+.+.|+|++|+|||+||+++++... .....+.|+.+... ..... .+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~~~---~~~~~-----------------------~~~~~ 88 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLSKS---QYFSP-----------------------AVLEN 88 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHHHh---hhhhH-----------------------HHHhh
Confidence 446789999999999999999999872 22345677765311 00000 11111
Q ss_pred hccCceEEEEccccCc---ccccc-c---cccC-CCCcEEEE-ecCC---------ccccccCCccceEEeccCCHHhHH
Q 003513 171 LSKKKFALLLDDLWER---VDLKK-I---GVPL-PKNSAVVF-TTRF---------VDVCGGMEARRMFKVACLSDEDAW 232 (814)
Q Consensus 171 l~~~~~LlVlDdv~~~---~~~~~-~---~~~~-~~~~~iii-TtR~---------~~~~~~~~~~~~~~l~~L~~~ea~ 232 (814)
++ +.-+|||||+|.. .+++. + .... ..+..+|+ |++. +.+..++.....++++++++++.+
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 22 2348999999864 22221 1 1111 12555544 4543 233444455678999999999999
Q ss_pred HHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHHHHh
Q 003513 233 ELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIGRAM 275 (814)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 275 (814)
+++.+.+.......+ +++..-|++.+.|..-.+..+-..+
T Consensus 168 ~iL~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 168 IVLQRNAYQRGIELS---DEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 999998875443344 7778888888887776665544433
No 42
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.96 E-value=1.1e-08 Score=120.19 Aligned_cols=305 Identities=15% Similarity=0.202 Sum_probs=173.7
Q ss_pred ccchhHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHH---HHHHHHHH
Q 003513 72 VVGLQSQLEQVWRCLVQ--EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLE---KIQETIGK 146 (814)
Q Consensus 72 ~vGr~~~~~~l~~~L~~--~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~---~~~~~i~~ 146 (814)
++||+.+++.|...+.. .+...++.|.|..|||||+|+++|.....+.+..|-...+-....+.... +..+.+..
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 79999999999999875 34677999999999999999999999984332322222222222222221 22222222
Q ss_pred -------------------HhCCCCC-------------C-------CCCCCHHHH-----HHHHHHHh-ccCceEEEEc
Q 003513 147 -------------------KIGLCND-------------S-------WKNKSLEEK-----AHDIFKTL-SKKKFALLLD 181 (814)
Q Consensus 147 -------------------~l~~~~~-------------~-------~~~~~~~~~-----~~~l~~~l-~~~~~LlVlD 181 (814)
.+|.... . ......... ...+.... +.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 2222110 0 000111111 11222222 3469999999
Q ss_pred cc-cCcccc----ccccccCC--C--CcEEE--EecCCc--cccccCCccceEEeccCCHHhHHHHHHHHhccccccCCC
Q 003513 182 DL-WERVDL----KKIGVPLP--K--NSAVV--FTTRFV--DVCGGMEARRMFKVACLSDEDAWELFREKVGEETIESHH 248 (814)
Q Consensus 182 dv-~~~~~~----~~~~~~~~--~--~~~ii--iTtR~~--~~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~ 248 (814)
|+ |.+..- +.+....+ . ...|. .|.+.. .+.........+.|.||+..+...+.....+... .
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~----~ 237 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK----L 237 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----c
Confidence 99 544221 11111111 0 11222 222221 1122223446899999999999999999887533 2
Q ss_pred ChHHHHHHHHHHcCCChHHHHHHHHHhccC------CCHHHHHHHHHHHhhhhcccCCCchhhhhhhhhhccCCCchhhH
Q 003513 249 SLPELAQTVAKECRGLPLALITIGRAMAYK------KTPEEWRYAIEVLRRSASEFAGLGKEVYPLLKFSYDCLPNDAIR 322 (814)
Q Consensus 249 ~~~~~~~~i~~~~~g~Plal~~~~~~l~~~------~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k 322 (814)
...+....|+++..|+|+.+..+-..+... .+...|..-...+.. .... +.+...+..-.+.||. ..+
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~----~~~~-~~vv~~l~~rl~kL~~-~t~ 311 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI----LATT-DAVVEFLAARLQKLPG-TTR 311 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC----chhh-HHHHHHHHHHHhcCCH-HHH
Confidence 236788999999999999999988887653 344555543322221 1111 2355567888999998 789
Q ss_pred HHHhhhcCCCCCCccChHHHHHHHHhcCCCCCcccccchhhHHHHHHHHHhcccccc-------cCc---ceeehHHHHH
Q 003513 323 SCFLYCCLYPEDFSIDKRDLIDCWMCEGFLEGDKFGTQNQGYYIVGTLVHACLLEEV-------EDD---QVKMHDVVRD 392 (814)
Q Consensus 323 ~~fl~~~~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~l~~L~~~~ll~~~-------~~~---~~~mH~lv~~ 392 (814)
..+-..|++...|. .+.|...+.. .....+....+.|....++... ... +-..|+.+++
T Consensus 312 ~Vl~~AA~iG~~F~--l~~La~l~~~---------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqq 380 (849)
T COG3899 312 EVLKAAACIGNRFD--LDTLAALAED---------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQ 380 (849)
T ss_pred HHHHHHHHhCccCC--HHHHHHHHhh---------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHH
Confidence 99999999886655 3333333321 2223444445555555444321 111 1256888888
Q ss_pred HHHHH
Q 003513 393 MALWI 397 (814)
Q Consensus 393 ~a~~i 397 (814)
.|-..
T Consensus 381 aaY~~ 385 (849)
T COG3899 381 AAYNL 385 (849)
T ss_pred HHhcc
Confidence 77543
No 43
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.85 E-value=1.6e-07 Score=104.72 Aligned_cols=180 Identities=14% Similarity=0.148 Sum_probs=112.0
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCC-------------------CCeEEEEE
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKD-------------------FDYVIWVV 130 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~-------------------f~~~~wv~ 130 (814)
.++||.+..++.|.+++..+.-...+.++|..|+||||+|+.+++.+. .... |.-+++++
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn-Ce~~~~~~PCG~C~sCr~I~~G~h~DviEID 94 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN-CETGVTSQPCGVCRACREIDEGRFVDYVEMD 94 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CccCCCCCCCcccHHHHHHhcCCCceEEEec
Confidence 468999999999999998773455668999999999999999998762 1111 11123332
Q ss_pred ECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-hccCceEEEEccccCccc--cccc---cccCCCCcEEEE
Q 003513 131 VSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKT-LSKKKFALLLDDLWERVD--LKKI---GVPLPKNSAVVF 204 (814)
Q Consensus 131 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~--~~~~---~~~~~~~~~iii 204 (814)
.+....++++. +.+...... ..++.-++|||+++.... +..+ ....+.+.++|+
T Consensus 95 Aas~rgVDdIR--------------------eLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FIL 154 (830)
T PRK07003 95 AASNRGVDEMA--------------------ALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFIL 154 (830)
T ss_pred ccccccHHHHH--------------------HHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 22221111111 111111100 124556899999986532 3333 222344788888
Q ss_pred ecCCcccc--ccCCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChH-HHHHHHH
Q 003513 205 TTRFVDVC--GGMEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPL-ALITIGR 273 (814)
Q Consensus 205 TtR~~~~~--~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 273 (814)
||++..-. ........++++.++.++..+.+.+.+..+....+ .+....|++.++|... ++..+-.
T Consensus 155 aTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id---~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 155 ATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFE---PQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred EECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 77755432 11233568999999999999999988765443223 6778889999998664 5555443
No 44
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.84 E-value=9.7e-08 Score=104.31 Aligned_cols=177 Identities=16% Similarity=0.191 Sum_probs=107.1
Q ss_pred CcccchhHHHHH---HHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHH
Q 003513 70 PTVVGLQSQLEQ---VWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGK 146 (814)
Q Consensus 70 ~~~vGr~~~~~~---l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 146 (814)
.++||++..+.. +..++..+ ....+.|+|++|+||||+|+.+++.. ...|. .+..+. .....+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~-~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~~---~l~a~~-~~~~~i------ 77 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG-RLSSMILWGPPGTGKTTLARIIAGAT---DAPFE---ALSAVT-SGVKDL------ 77 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC-CCceEEEECCCCCCHHHHHHHHHHHh---CCCEE---EEeccc-ccHHHH------
Confidence 458999888666 77777655 66788899999999999999999986 33331 222111 111111
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHH-hccCceEEEEccccCc--cccccccccCCCCcEEEE--ecCCccc--c-ccCCcc
Q 003513 147 KIGLCNDSWKNKSLEEKAHDIFKT-LSKKKFALLLDDLWER--VDLKKIGVPLPKNSAVVF--TTRFVDV--C-GGMEAR 218 (814)
Q Consensus 147 ~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~--~~~~~~~~~~~~~~~iii--TtR~~~~--~-~~~~~~ 218 (814)
.+........ ..+++.+|++|+++.. .+.+.+...+..+..++| ||.+... . ......
T Consensus 78 --------------r~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att~n~~~~l~~aL~SR~ 143 (413)
T PRK13342 78 --------------REVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRA 143 (413)
T ss_pred --------------HHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCCCChhhhccHHHhccc
Confidence 1111122111 1457889999999864 233333333344555555 3443321 1 111223
Q ss_pred ceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHHHH
Q 003513 219 RMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIGRA 274 (814)
Q Consensus 219 ~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 274 (814)
..+.+.+++.++..+++.+.+.........-.++....|++.++|.+..+..+...
T Consensus 144 ~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 144 QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 67999999999999999887543210000223667788999999999877555443
No 45
>PRK04195 replication factor C large subunit; Provisional
Probab=98.83 E-value=2.8e-07 Score=102.82 Aligned_cols=182 Identities=21% Similarity=0.198 Sum_probs=113.7
Q ss_pred CCcccchhHHHHHHHHHHhc---CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHH
Q 003513 69 EPTVVGLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIG 145 (814)
Q Consensus 69 ~~~~vGr~~~~~~l~~~L~~---~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 145 (814)
-..++|.+..++++.+|+.. +...+.+.|+|++|+||||+|+.++++. . ++ ++-++.++..+...+...+.
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el---~--~~-~ielnasd~r~~~~i~~~i~ 86 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY---G--WE-VIELNASDQRTADVIERVAG 86 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc---C--CC-EEEEcccccccHHHHHHHHH
Confidence 34689999999999999864 2236889999999999999999999987 2 32 33444444333333332222
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCccc------cccccccC-CCCcEEEEecCCcccc-c--cC
Q 003513 146 KKIGLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWERVD------LKKIGVPL-PKNSAVVFTTRFVDVC-G--GM 215 (814)
Q Consensus 146 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~------~~~~~~~~-~~~~~iiiTtR~~~~~-~--~~ 215 (814)
...... .....++-+||||+++.... +..+...+ ..+..||+|+.+..-. . ..
T Consensus 87 ~~~~~~-----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 87 EAATSG-----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HhhccC-----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhhHh
Confidence 211100 00113678999999976422 22221111 1245566666543211 1 11
Q ss_pred CccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHHHHhc
Q 003513 216 EARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIGRAMA 276 (814)
Q Consensus 216 ~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~ 276 (814)
.....+++.+++.++....+...+.......+ .+....|++.++|-...+......+.
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 23467999999999999999888755443333 67889999999997766654443343
No 46
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.82 E-value=1.8e-10 Score=120.74 Aligned_cols=165 Identities=24% Similarity=0.339 Sum_probs=79.8
Q ss_pred cCCCcccCCCCccCcccEEEEEcccCCCcCCC-CCCCCCcccEEEcccCCCccccchhhccCCcccEEEccCCccccccC
Q 003513 412 AGSGLTKAPADVRGWEMVRRLSLMKNSIENLP-TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLP 490 (814)
Q Consensus 412 ~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp 490 (814)
+.+.+.++|..+..+..|+.+.+..|.+..+| .+.++..|.+|+++.|++..+|.. +. .--|++|-+++| +++.+|
T Consensus 83 srNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~-lC-~lpLkvli~sNN-kl~~lp 159 (722)
T KOG0532|consen 83 SRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG-LC-DLPLKVLIVSNN-KLTSLP 159 (722)
T ss_pred cccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh-hh-cCcceeEEEecC-ccccCC
Confidence 33444445444444445555555555554444 244455555555555554444443 21 222455555555 455555
Q ss_pred cccccccccCEEEecCCCCcccChhhhcCCCCceeccccccccceeCccccCCCcccceeeccccCcccchhhhchHHHH
Q 003513 491 MGISKLVSLQLLDISNTSVTELPEDLKALVNLKCLNLVWAKELVVVPQQLLSNFSRLRVLRMFATGFLLSSWHENVAEEL 570 (814)
Q Consensus 491 ~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l 570 (814)
..|+.+..|..|+.+.|.+..+|..++.+.+|+.|++..|+. ..+|.+ +. .-.|..|+++.|.+ ..+|-.+
T Consensus 160 ~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l-~~lp~E-l~-~LpLi~lDfScNki------s~iPv~f 230 (722)
T KOG0532|consen 160 EEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHL-EDLPEE-LC-SLPLIRLDFSCNKI------SYLPVDF 230 (722)
T ss_pred cccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhh-hhCCHH-Hh-CCceeeeecccCce------eecchhh
Confidence 555555555555555555555555555555555555554432 344444 22 23344555554443 3444455
Q ss_pred cCCCCccEEEEEecChhh
Q 003513 571 LGLKYLEVLEISFRSFEA 588 (814)
Q Consensus 571 ~~l~~L~~L~l~~~~~~~ 588 (814)
.+|++|++|-|.+|.+..
T Consensus 231 r~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 231 RKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhhhheeeeeccCCCCC
Confidence 555555555555554443
No 47
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.82 E-value=4.8e-08 Score=93.02 Aligned_cols=174 Identities=19% Similarity=0.226 Sum_probs=96.0
Q ss_pred CCcccchhHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHH
Q 003513 69 EPTVVGLQSQLEQVWRCLVQ----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETI 144 (814)
Q Consensus 69 ~~~~vGr~~~~~~l~~~L~~----~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 144 (814)
-.+|||.++.++++.-++.. ++....+.+||++|+||||||..+++.. ...|. ++....-....++ ..+
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~i~k~~dl-~~i 95 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPAIEKAGDL-AAI 95 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC--SCHHH-HHH
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchhhhhHHHH-HHH
Confidence 35799999998887655532 2357889999999999999999999998 44442 2222110011111 111
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCcc---------cccc---------------ccccCCCCc
Q 003513 145 GKKIGLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWERV---------DLKK---------------IGVPLPKNS 200 (814)
Q Consensus 145 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---------~~~~---------------~~~~~~~~~ 200 (814)
+..+ +++-+|.+|++.... .++. +...+++-+
T Consensus 96 l~~l------------------------~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 96 LTNL------------------------KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp HHT--------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred HHhc------------------------CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 1111 133456667665320 0111 111223345
Q ss_pred EEEEecCCccccccCCc--cceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHHHHhc
Q 003513 201 AVVFTTRFVDVCGGMEA--RRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIGRAMA 276 (814)
Q Consensus 201 ~iiiTtR~~~~~~~~~~--~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~ 276 (814)
-|=.|||...+...+.. .-+.+++..+.+|-.+++.+.+..-....+ ++.+.+|++.+.|-|.-+.-+-..++
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~---~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEID---EDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE----HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 56678987655433322 235689999999999999988765443333 78899999999999987666555443
No 48
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.81 E-value=4.1e-08 Score=98.56 Aligned_cols=167 Identities=14% Similarity=0.146 Sum_probs=103.9
Q ss_pred hhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCC
Q 003513 75 LQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDS 154 (814)
Q Consensus 75 r~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 154 (814)
.+..++++.+++... ....+.|+|+.|+|||+||+.+++.. .......++++++.-. ...
T Consensus 22 ~~~~~~~l~~~~~~~-~~~~lll~G~~G~GKT~la~~~~~~~---~~~~~~~~~i~~~~~~------~~~---------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGK-GDRFLYLWGESGSGKSHLLQAACAAA---EERGKSAIYLPLAELA------QAD---------- 81 (226)
T ss_pred cHHHHHHHHHHHhcC-CCCeEEEECCCCCCHHHHHHHHHHHH---HhcCCcEEEEeHHHHH------HhH----------
Confidence 455777777775544 56789999999999999999999887 2233345666543221 000
Q ss_pred CCCCCHHHHHHHHHHHhccCceEEEEccccCccc----cccccccC----CCCcEEEEecCCccc---------cccCCc
Q 003513 155 WKNKSLEEKAHDIFKTLSKKKFALLLDDLWERVD----LKKIGVPL----PKNSAVVFTTRFVDV---------CGGMEA 217 (814)
Q Consensus 155 ~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----~~~~~~~~----~~~~~iiiTtR~~~~---------~~~~~~ 217 (814)
..+.+.+++ .-+|||||++.... .+.+...+ ..+..+|+||+.... ...+..
T Consensus 82 ----------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~ 150 (226)
T TIGR03420 82 ----------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAW 150 (226)
T ss_pred ----------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhc
Confidence 011112222 24899999975421 12221111 125688888875321 112222
Q ss_pred cceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHHHHh
Q 003513 218 RRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIGRAM 275 (814)
Q Consensus 218 ~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 275 (814)
...+++.+++++|...++...+.......+ ++..+.|++.+.|+|..+..+...+
T Consensus 151 ~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 151 GLVFQLPPLSDEEKIAALQSRAARRGLQLP---DEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred CeeEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 357999999999999999876543222222 6777889999999998887765443
No 49
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.78 E-value=1.8e-09 Score=104.35 Aligned_cols=181 Identities=18% Similarity=0.232 Sum_probs=126.0
Q ss_pred CCCCccCcccEEEEEcccCCCcCCCCC-CCCCcccEEEcccCCCccccc-----------------------hhhccCCc
Q 003513 419 APADVRGWEMVRRLSLMKNSIENLPTV-PTCPHLLTLFLNRNPLRTITG-----------------------GFFQSMSC 474 (814)
Q Consensus 419 ~p~~~~~~~~l~~L~l~~~~~~~l~~~-~~l~~L~~L~l~~~~~~~~~~-----------------------~~~~~l~~ 474 (814)
+|-.+..++++..+.++.+.-+.+..+ ..-|.|.++.+....+...+. ..+..+..
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~ 285 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQE 285 (490)
T ss_pred cccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhh
Confidence 344455667788888887766655443 233567777776654322111 01223567
Q ss_pred ccEEEccCCccccccCcccccccccCEEEecCCCCcccChhhhcCCCCceeccccccccceeCccccCCCcccceeeccc
Q 003513 475 LTVLKMSDNIMLRQLPMGISKLVSLQLLDISNTSVTELPEDLKALVNLKCLNLVWAKELVVVPQQLLSNFSRLRVLRMFA 554 (814)
Q Consensus 475 L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~ 554 (814)
|..||||+| .++.+-+++.-++.++.|++++|.+.++-. +..+++|++||+++|.. ..+.. .-.++.+.++|.+..
T Consensus 286 LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~L-s~~~G-wh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 286 LTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLL-AECVG-WHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhcccccc-chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchh-Hhhhh-hHhhhcCEeeeehhh
Confidence 888899998 888888888888889999999988887754 78888899999988854 44432 245778888888887
Q ss_pred cCcccchhhhchHHHHcCCCCccEEEEEecChhhHHHHhccccccccceeeeecccCCCCcccccCccCCCCCcEEEecc
Q 003513 555 TGFLLSSWHENVAEELLGLKYLEVLEISFRSFEAYQTFLSSQKLRSCTHALLLHRFDREESIDVADLADLEQLNTLDFYG 634 (814)
Q Consensus 555 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 634 (814)
|.+ ...+.++++-+|..|+++.|++..++.. ..+++++.|+.|.+.+
T Consensus 362 N~i-------E~LSGL~KLYSLvnLDl~~N~Ie~ldeV--------------------------~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 362 NKI-------ETLSGLRKLYSLVNLDLSSNQIEELDEV--------------------------NHIGNLPCLETLRLTG 408 (490)
T ss_pred hhH-------hhhhhhHhhhhheeccccccchhhHHHh--------------------------cccccccHHHHHhhcC
Confidence 754 4566677777888888888887665432 4567778888888887
Q ss_pred CC
Q 003513 635 CG 636 (814)
Q Consensus 635 ~~ 636 (814)
|+
T Consensus 409 NP 410 (490)
T KOG1259|consen 409 NP 410 (490)
T ss_pred CC
Confidence 77
No 50
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.77 E-value=7.9e-07 Score=86.36 Aligned_cols=192 Identities=17% Similarity=0.182 Sum_probs=108.1
Q ss_pred CcccchhHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHH
Q 003513 70 PTVVGLQSQLEQVWRCLVQ----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIG 145 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~----~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 145 (814)
.+|||.++.++++.-.+.. +.....+.++|++|.||||||.-+++.. ...+. ++.........-+..|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em---gvn~k----~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL---GVNLK----ITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh---cCCeE----ecccccccChhhHHHHH
Confidence 4689999999998777754 2357799999999999999999999998 32221 11111111111122222
Q ss_pred HHhCCCCCCCCCCCHHHHH----HHHHHHhccCceEEEEccccCccccccccccCCCCcEEEEecCCccccccCC--ccc
Q 003513 146 KKIGLCNDSWKNKSLEEKA----HDIFKTLSKKKFALLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDVCGGME--ARR 219 (814)
Q Consensus 146 ~~l~~~~~~~~~~~~~~~~----~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~~~~~iiiTtR~~~~~~~~~--~~~ 219 (814)
..+.-.+ -.--+....+. +.+.-.+.+-+.=+++.--. .-..+...+++-.-|=.|||...+...+. -.-
T Consensus 99 t~Le~~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp---~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi 174 (332)
T COG2255 99 TNLEEGD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGP---AARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGI 174 (332)
T ss_pred hcCCcCC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCC---ccceEeccCCCeeEeeeccccccccchhHHhcCC
Confidence 2221110 00000111111 11111222222222222211 11122233444556668999665543332 234
Q ss_pred eEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHHHHh
Q 003513 220 MFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIGRAM 275 (814)
Q Consensus 220 ~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 275 (814)
+.+++..+.+|-.+++.+.+..-....+ ++.+.+|+++..|-|.-..-+-+..
T Consensus 175 ~~rlefY~~~eL~~Iv~r~a~~l~i~i~---~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 175 IQRLEFYTVEELEEIVKRSAKILGIEID---EEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred eeeeecCCHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHhccCCcHHHHHHHHHH
Confidence 6789999999999999998865443333 7889999999999997665555443
No 51
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=3.5e-07 Score=101.02 Aligned_cols=189 Identities=12% Similarity=0.124 Sum_probs=110.1
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhC
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIG 149 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 149 (814)
..+||.+..++.|.+++..+.-...+.++|+.|+||||+|+.+++.. ....... . .....-...+.+...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L-nC~~~~~------~-~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL-NCETGVT------S-TPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-CCCcCCC------C-CCCccCHHHHHHhcCCC
Confidence 46899999999999999877445688999999999999999999886 2111100 0 00000011111111000
Q ss_pred CCC---CCCCCCCHHHHHHHHHHH-----hccCceEEEEccccCcc--ccccc---cccCCCCcEEEEecCCcc-cc-cc
Q 003513 150 LCN---DSWKNKSLEEKAHDIFKT-----LSKKKFALLLDDLWERV--DLKKI---GVPLPKNSAVVFTTRFVD-VC-GG 214 (814)
Q Consensus 150 ~~~---~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~~--~~~~~---~~~~~~~~~iiiTtR~~~-~~-~~ 214 (814)
... +.......++... +... ..+++-++|||+++... ....+ ....+.+..+|++|.+.. +. ..
T Consensus 87 pDviEIDAAs~~~VddIRe-li~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TI 165 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTRE-LLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITV 165 (702)
T ss_pred CceEEecccccCCHHHHHH-HHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHH
Confidence 000 0000111222111 1111 13566799999998652 22222 222334677777776433 21 11
Q ss_pred CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHH
Q 003513 215 MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALIT 270 (814)
Q Consensus 215 ~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 270 (814)
......+++++++.++..+.+.+.+.......+ .+....|++.++|.+..+..
T Consensus 166 lSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id---~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 166 ISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD---QDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred HHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 234568999999999999999888765442222 67778899999998865543
No 52
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.75 E-value=2.5e-08 Score=102.39 Aligned_cols=288 Identities=19% Similarity=0.173 Sum_probs=191.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCC-CeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDF-DYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFK 169 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 169 (814)
..+.+.++|.|||||||++-++.+ . ...| +.+.++...+-.+...+.-.+...++.+. .+-+.....+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~-----~~g~~~~~~~~~ 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHV-----QPGDSAVDTLVR 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhccccc-----ccchHHHHHHHH
Confidence 358999999999999999999999 4 3444 57778888888888888888888888754 233445567777
Q ss_pred HhccCceEEEEccccCcccc-----ccccccCCCCcEEEEecCCccccccCCccceEEeccCCHH-hHHHHHHHHhcccc
Q 003513 170 TLSKKKFALLLDDLWERVDL-----KKIGVPLPKNSAVVFTTRFVDVCGGMEARRMFKVACLSDE-DAWELFREKVGEET 243 (814)
Q Consensus 170 ~l~~~~~LlVlDdv~~~~~~-----~~~~~~~~~~~~iiiTtR~~~~~~~~~~~~~~~l~~L~~~-ea~~l~~~~~~~~~ 243 (814)
...++|.++|+||..+..+- ..+.. -...-.|+.|+|..-. ........+.+|+.- ++.++|...+....
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all~-~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~ 159 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALLG-ACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVA 159 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHHc-cchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhc
Confidence 88899999999998655321 11111 1114567888885332 235567788888864 89999987764322
Q ss_pred --ccCCCChHHHHHHHHHHcCCChHHHHHHHHHhccCCCHHHHH----HHHHHHhhhhcccCCCchhhhhhhhhhccCCC
Q 003513 244 --IESHHSLPELAQTVAKECRGLPLALITIGRAMAYKKTPEEWR----YAIEVLRRSASEFAGLGKEVYPLLKFSYDCLP 317 (814)
Q Consensus 244 --~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~----~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~ 317 (814)
............+|.+..+|.|++|..+++..+. ....... +....+........--+....+.+.+||.-|.
T Consensus 160 ~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~s-l~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLt 238 (414)
T COG3903 160 LSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRS-LSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLT 238 (414)
T ss_pred cceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHh-cCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhh
Confidence 1223344678889999999999999999988875 3332222 22222332211111223467889999999999
Q ss_pred chhhHHHHhhhcCCCCCCccChHHHHHHHHhcCCCCCcccccchhhHHHHHHHHHhcccccc---cCcceeehHHHHHHH
Q 003513 318 NDAIRSCFLYCCLYPEDFSIDKRDLIDCWMCEGFLEGDKFGTQNQGYYIVGTLVHACLLEEV---EDDQVKMHDVVRDMA 394 (814)
Q Consensus 318 ~~~~k~~fl~~~~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~l~~L~~~~ll~~~---~~~~~~mH~lv~~~a 394 (814)
. ..+..|..++.|...|.-.. ..|.+.|-.- ......+...+..+++++++.-. ..-.++.-+-++.|+
T Consensus 239 g-we~~~~~rLa~~~g~f~~~l----~~~~a~g~~~---~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Ya 310 (414)
T COG3903 239 G-WERALFGRLAVFVGGFDLGL----ALAVAAGADV---DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYA 310 (414)
T ss_pred h-HHHHHhcchhhhhhhhcccH----HHHHhcCCcc---ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHH
Confidence 8 78889999999988776542 2344333211 11223444557788888887654 344566666677777
Q ss_pred HHHHhh
Q 003513 395 LWITCE 400 (814)
Q Consensus 395 ~~i~~~ 400 (814)
...-++
T Consensus 311 laeL~r 316 (414)
T COG3903 311 LAELHR 316 (414)
T ss_pred HHHHHh
Confidence 665554
No 53
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.74 E-value=3.9e-07 Score=102.12 Aligned_cols=171 Identities=13% Similarity=0.101 Sum_probs=108.3
Q ss_pred CCcccchhHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHhhhccC--CCCC--CeEEEEEECCccCHHHH
Q 003513 69 EPTVVGLQSQLEQVWRCLVQ----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDN--PKDF--DYVIWVVVSKDLQLEKI 140 (814)
Q Consensus 69 ~~~~vGr~~~~~~l~~~L~~----~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~--~~~f--~~~~wv~~~~~~~~~~~ 140 (814)
+..+.|||+++++|...|.. .+...++.|+|++|.|||++++.|.+.+.+. .... -.+++|.+..-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 46789999999999998865 2234578899999999999999998876321 1111 13677887777788889
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc---cCceEEEEccccCcc-----ccccccc-cCCCCcEEEE--ecCCc
Q 003513 141 QETIGKKIGLCNDSWKNKSLEEKAHDIFKTLS---KKKFALLLDDLWERV-----DLKKIGV-PLPKNSAVVF--TTRFV 209 (814)
Q Consensus 141 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~~~~LlVlDdv~~~~-----~~~~~~~-~~~~~~~iii--TtR~~ 209 (814)
+..|..++..... .......+....+...+. +...+||||+++... .+-.+.. +...+++|++ +|.+.
T Consensus 834 YqvI~qqL~g~~P-~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 834 YQVLYKQLFNKKP-PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHcCCCC-CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 9999988843321 122233345555555542 224589999997542 1211111 1112445443 34322
Q ss_pred cc--------cccCCccceEEeccCCHHhHHHHHHHHhcc
Q 003513 210 DV--------CGGMEARRMFKVACLSDEDAWELFREKVGE 241 (814)
Q Consensus 210 ~~--------~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~ 241 (814)
.. ...+. ...+..++++.+|..+++..++..
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHh
Confidence 21 12222 234677999999999999998864
No 54
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.5e-09 Score=109.08 Aligned_cols=209 Identities=20% Similarity=0.187 Sum_probs=113.2
Q ss_pred CCCCcccEEEcccCCCccccc-hhhccCCcccEEEccCCcccc---ccCcccccccccCEEEecCCCCcccCh--hhhcC
Q 003513 446 PTCPHLLTLFLNRNPLRTITG-GFFQSMSCLTVLKMSDNIMLR---QLPMGISKLVSLQLLDISNTSVTELPE--DLKAL 519 (814)
Q Consensus 446 ~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~---~lp~~i~~l~~L~~L~l~~~~l~~lp~--~i~~l 519 (814)
+++++|+...|.++.+...+. .....|++++.|||+.| .+. .+-.-+..|++|+.|+++.|++...-. .-..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 466778888888777654442 34667788888888877 333 233345567777777777776652211 11345
Q ss_pred CCCceeccccccccceeCccccCCCcccceeeccccCcccchhhhchHHHHcCCCCccEEEEEecChhhHHHHhcccccc
Q 003513 520 VNLKCLNLVWAKELVVVPQQLLSNFSRLRVLRMFATGFLLSSWHENVAEELLGLKYLEVLEISFRSFEAYQTFLSSQKLR 599 (814)
Q Consensus 520 ~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 599 (814)
++|+.|.++.|.....--......+++|+.|++..|... ........-++.|+.|+|+.|.+..+
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-----~~~~~~~~i~~~L~~LdLs~N~li~~---------- 261 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-----LIKATSTKILQTLQELDLSNNNLIDF---------- 261 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-----ceecchhhhhhHHhhccccCCccccc----------
Confidence 667777777775533222223455667777777666321 10111111234455555555554332
Q ss_pred ccceeeeecccCCCCcccccCccCCCCCcEEEeccCCCcceE-EecccccccccCCccccCCccEEeeecCcc--ccccc
Q 003513 600 SCTHALLLHRFDREESIDVADLADLEQLNTLDFYGCGCIKGL-KIDCNDMVQKSRQPYVFRSLEKVTVRFCRN--LRHLT 676 (814)
Q Consensus 600 ~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~--l~~l~ 676 (814)
......+.++.|..|+++.|.. .++ .++.. .......|++|++|++..++- +.++.
T Consensus 262 ----------------~~~~~~~~l~~L~~Lnls~tgi-~si~~~d~~----s~~kt~~f~kL~~L~i~~N~I~~w~sl~ 320 (505)
T KOG3207|consen 262 ----------------DQGYKVGTLPGLNQLNLSSTGI-ASIAEPDVE----SLDKTHTFPKLEYLNISENNIRDWRSLN 320 (505)
T ss_pred ----------------ccccccccccchhhhhccccCc-chhcCCCcc----chhhhcccccceeeecccCccccccccc
Confidence 2223455667777777776652 221 11110 011124578888888887643 33344
Q ss_pred ccccCCCCcEEEEec
Q 003513 677 FLVFAPNLKSISVRY 691 (814)
Q Consensus 677 ~l~~l~~L~~L~l~~ 691 (814)
.+..+++|+.|.+..
T Consensus 321 ~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 321 HLRTLENLKHLRITL 335 (505)
T ss_pred hhhccchhhhhhccc
Confidence 445566777766443
No 55
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.73 E-value=1e-08 Score=112.39 Aligned_cols=179 Identities=26% Similarity=0.370 Sum_probs=130.5
Q ss_pred CCccCcccEEEEEcccCCCcCCCCCCCCC--cccEEEcccCCCccccchhhccCCcccEEEccCCccccccCcccccccc
Q 003513 421 ADVRGWEMVRRLSLMKNSIENLPTVPTCP--HLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGISKLVS 498 (814)
Q Consensus 421 ~~~~~~~~l~~L~l~~~~~~~l~~~~~l~--~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~ 498 (814)
..+.....+..|++.++.+..++...... +|+.|++++|.+..++.. +..+++|+.|++++| .+.++|...+.+++
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~ 187 (394)
T COG4886 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLLSNLSN 187 (394)
T ss_pred hhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCc-hhhhhhhhhhhhhh
Confidence 34445567888888888888888765554 788888888888777533 678888888888888 78888877778888
Q ss_pred cCEEEecCCCCcccChhhhcCCCCceeccccccccceeCccccCCCcccceeeccccCcccchhhhchHHHHcCCCCccE
Q 003513 499 LQLLDISNTSVTELPEDLKALVNLKCLNLVWAKELVVVPQQLLSNFSRLRVLRMFATGFLLSSWHENVAEELLGLKYLEV 578 (814)
Q Consensus 499 L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~ 578 (814)
|+.|++++|++..+|..+..+..|+.|.+++|.... .+.. +.++.++..|.+.++.. ...+..+..+++++.
T Consensus 188 L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~-~~~~-~~~~~~l~~l~l~~n~~------~~~~~~~~~l~~l~~ 259 (394)
T COG4886 188 LNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE-LLSS-LSNLKNLSGLELSNNKL------EDLPESIGNLSNLET 259 (394)
T ss_pred hhheeccCCccccCchhhhhhhhhhhhhhcCCccee-cchh-hhhcccccccccCCcee------eeccchhccccccce
Confidence 888888888888888877777778888888875433 3333 67788888887666654 223566677777888
Q ss_pred EEEEecChhhHHHHhccccccccceeeeecccCCCCcccccCccCCCCCcEEEeccCCCc
Q 003513 579 LEISFRSFEAYQTFLSSQKLRSCTHALLLHRFDREESIDVADLADLEQLNTLDFYGCGCI 638 (814)
Q Consensus 579 L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l 638 (814)
|+++.|.+..+ ..++.+.+|+.|+++++...
T Consensus 260 L~~s~n~i~~i-----------------------------~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 260 LDLSNNQISSI-----------------------------SSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ecccccccccc-----------------------------ccccccCccCEEeccCcccc
Confidence 88777665432 22566778888888776543
No 56
>PRK08727 hypothetical protein; Validated
Probab=98.71 E-value=1.8e-07 Score=93.56 Aligned_cols=163 Identities=13% Similarity=0.092 Sum_probs=97.2
Q ss_pred ccc-hhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCC
Q 003513 72 VVG-LQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGL 150 (814)
Q Consensus 72 ~vG-r~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 150 (814)
|++ -...+..+.....+. ....+.|+|..|+|||+|++++++... .....+.|+...+ ....+.
T Consensus 21 f~~~~~n~~~~~~~~~~~~-~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~------~~~~~~----- 85 (233)
T PRK08727 21 YIAAPDGLLAQLQALAAGQ-SSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQA------AAGRLR----- 85 (233)
T ss_pred ccCCcHHHHHHHHHHHhcc-CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHH------hhhhHH-----
Confidence 444 334444443333322 446799999999999999999999872 2233566765322 111111
Q ss_pred CCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCcc---ccc-ccccc----CCCCcEEEEecCCccc---------cc
Q 003513 151 CNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWERV---DLK-KIGVP----LPKNSAVVFTTRFVDV---------CG 213 (814)
Q Consensus 151 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~~~-~~~~~----~~~~~~iiiTtR~~~~---------~~ 213 (814)
...+.+ .+.-+||+||+.... .++ .+..- ...+..||+|++...- ..
T Consensus 86 ---------------~~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S 149 (233)
T PRK08727 86 ---------------DALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS 149 (233)
T ss_pred ---------------HHHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH
Confidence 111111 233589999986432 111 11111 1126679999985322 12
Q ss_pred cCCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHH
Q 003513 214 GMEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLAL 268 (814)
Q Consensus 214 ~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 268 (814)
++.....+++++++.++-.+++.+++.......+ ++...-|++.++|-.-.+
T Consensus 150 Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 150 RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 2333568999999999999999987754333333 677788888888766554
No 57
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=3.1e-09 Score=108.39 Aligned_cols=158 Identities=17% Similarity=0.176 Sum_probs=105.1
Q ss_pred CcccEEEEEcccCCCcCCC---CCCCCCcccEEEcccCCCcccc--chhhccCCcccEEEccCCccccccCcc--ccccc
Q 003513 425 GWEMVRRLSLMKNSIENLP---TVPTCPHLLTLFLNRNPLRTIT--GGFFQSMSCLTVLKMSDNIMLRQLPMG--ISKLV 497 (814)
Q Consensus 425 ~~~~l~~L~l~~~~~~~l~---~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~lp~~--i~~l~ 497 (814)
++++|+.++|.++.+...+ ....|++++.|+|+.|-+.... ..+...+|+|+.|+|+.| .+....++ -..+.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhhh
Confidence 4567788888877776655 3567888888888888654332 344677888888888888 44332221 23567
Q ss_pred ccCEEEecCCCCc--ccChhhhcCCCCceeccccccccceeCccccCCCcccceeeccccCcccchhhhchHHHHcCCCC
Q 003513 498 SLQLLDISNTSVT--ELPEDLKALVNLKCLNLVWAKELVVVPQQLLSNFSRLRVLRMFATGFLLSSWHENVAEELLGLKY 575 (814)
Q Consensus 498 ~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~ 575 (814)
+|+.|.++.|.++ .+-..+..+++|+.|++.+|.....-... ..-++.|+.|++++|.++ ........+.++.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li----~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLI----DFDQGYKVGTLPG 272 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccc----ccccccccccccc
Confidence 8888888888887 44445567888888888887432221111 345677888888888763 1222345667788
Q ss_pred ccEEEEEecChhh
Q 003513 576 LEVLEISFRSFEA 588 (814)
Q Consensus 576 L~~L~l~~~~~~~ 588 (814)
|+.|+++.+++..
T Consensus 273 L~~Lnls~tgi~s 285 (505)
T KOG3207|consen 273 LNQLNLSSTGIAS 285 (505)
T ss_pred hhhhhccccCcch
Confidence 8888888776654
No 58
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.69 E-value=2.9e-07 Score=92.12 Aligned_cols=171 Identities=16% Similarity=0.145 Sum_probs=101.8
Q ss_pred CcccchhH-HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHh
Q 003513 70 PTVVGLQS-QLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKI 148 (814)
Q Consensus 70 ~~~vGr~~-~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 148 (814)
..++|... .+..+.++.... ..+.+.|+|+.|+|||+|++.+++... .....+.++.+.....
T Consensus 23 ~f~~~~n~~a~~~l~~~~~~~-~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~------------ 86 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALRQE-HSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAW------------ 86 (235)
T ss_pred ccccCccHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhh------------
Confidence 34457433 333333333333 456899999999999999999999872 2234566766532100
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCc---cccc----ccccc-CCCC-cEEEEecCCccc--------
Q 003513 149 GLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWER---VDLK----KIGVP-LPKN-SAVVFTTRFVDV-------- 211 (814)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~~~----~~~~~-~~~~-~~iiiTtR~~~~-------- 211 (814)
...+ +.+.+.+ --+|++||+... .+++ .+... ...| .++|+||+....
T Consensus 87 ----------~~~~----~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~ 151 (235)
T PRK08084 87 ----------FVPE----VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPD 151 (235)
T ss_pred ----------hhHH----HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHH
Confidence 0011 1111111 237899999653 2222 11112 1224 479999985432
Q ss_pred -cccCCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHHHH
Q 003513 212 -CGGMEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIGRA 274 (814)
Q Consensus 212 -~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 274 (814)
..++....+++++++++++-.+++.+++.......+ +++..-|++.+.|..-.+..+-..
T Consensus 152 L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~---~~v~~~L~~~~~~d~r~l~~~l~~ 212 (235)
T PRK08084 152 LASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELP---EDVGRFLLKRLDREMRTLFMTLDQ 212 (235)
T ss_pred HHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhhcCCHHHHHHHHHH
Confidence 233445578999999999999999887654333333 777888888888776665554433
No 59
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=7.9e-07 Score=95.27 Aligned_cols=190 Identities=16% Similarity=0.204 Sum_probs=107.2
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhC
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIG 149 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 149 (814)
.+++|.+..++.+.+.+..+.-...+.++|+.|+||||+|+.+++... ....... .+...-.....+.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~-c~~~~~~-------~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN-CQNGITS-------NPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc-CCCCCCC-------CCCCCCHHHHHHhcCCC
Confidence 468999999999999988763445678999999999999999998862 1111000 00000000111111000
Q ss_pred CCC---CCCCCCCHHHHHHHHHHHh-----ccCceEEEEccccCcc--ccccc---cccCCCCcEEEEecCCcc-cccc-
Q 003513 150 LCN---DSWKNKSLEEKAHDIFKTL-----SKKKFALLLDDLWERV--DLKKI---GVPLPKNSAVVFTTRFVD-VCGG- 214 (814)
Q Consensus 150 ~~~---~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~~~~~---~~~~~~~~~iiiTtR~~~-~~~~- 214 (814)
... +.......++ +..+.+.+ .+++-++|+|+++... .+..+ ....+....+|++|.+.. +...
T Consensus 88 ~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI 166 (363)
T PRK14961 88 LDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTI 166 (363)
T ss_pred CceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHH
Confidence 000 0000011111 12222222 2455699999997653 22222 222334667777665432 2211
Q ss_pred CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHH
Q 003513 215 MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITI 271 (814)
Q Consensus 215 ~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 271 (814)
.+....+++.+++.+|..+.+...+.......+ ++.+..|++.++|.|..+...
T Consensus 167 ~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~---~~al~~ia~~s~G~~R~al~~ 220 (363)
T PRK14961 167 LSRCLQFKLKIISEEKIFNFLKYILIKESIDTD---EYALKLIAYHAHGSMRDALNL 220 (363)
T ss_pred HhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 122468999999999999999887654331222 567788999999988654333
No 60
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.68 E-value=2.5e-09 Score=103.41 Aligned_cols=131 Identities=24% Similarity=0.371 Sum_probs=105.9
Q ss_pred CccCcccEEEEEcccCCCcCCC-CCCCCCcccEEEcccCCCccccchhhccCCcccEEEccCCccccccCcccccccccC
Q 003513 422 DVRGWEMVRRLSLMKNSIENLP-TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGISKLVSLQ 500 (814)
Q Consensus 422 ~~~~~~~l~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 500 (814)
.+..|+.|..+++++|.+..+. +..-.|.+|.|++++|.+..+.. +..+++|..||||+| .+.++-..=.+|-|.+
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGN-LLAECVGWHLKLGNIK 355 (490)
T ss_pred ecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccc-hhHhhhhhHhhhcCEe
Confidence 3456888999999999988876 45667899999999999766554 778999999999999 6766654455778899
Q ss_pred EEEecCCCCcccChhhhcCCCCceeccccccccceeCc-cccCCCcccceeeccccCc
Q 003513 501 LLDISNTSVTELPEDLKALVNLKCLNLVWAKELVVVPQ-QLLSNFSRLRVLRMFATGF 557 (814)
Q Consensus 501 ~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~-~~i~~l~~L~~L~l~~~~~ 557 (814)
+|.|+.|.+..+ ++++++.+|..||+++|++ ..+.. ..|++++.|++|.+.+|.+
T Consensus 356 tL~La~N~iE~L-SGL~KLYSLvnLDl~~N~I-e~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 356 TLKLAQNKIETL-SGLRKLYSLVNLDLSSNQI-EELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred eeehhhhhHhhh-hhhHhhhhheeccccccch-hhHHHhcccccccHHHHHhhcCCCc
Confidence 999999999888 5789999999999999865 44331 2289999999999998876
No 61
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=3.6e-07 Score=100.68 Aligned_cols=193 Identities=16% Similarity=0.147 Sum_probs=108.5
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCC-CCeEEEEEECCccCHHHHHHHHHHH-
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKD-FDYVIWVVVSKDLQLEKIQETIGKK- 147 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~- 147 (814)
.++||.+..++.|.+++..+.-...+.++|+.|+||||+|+.+++.+.-.... -.... +.....-...+.|...
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~----~~PCG~C~sC~~I~aG~ 91 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT----AQPCGQCRACTEIDAGR 91 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC----CCCCcccHHHHHHHcCC
Confidence 46899999999999999887445567899999999999999999887210000 00000 0000000111111100
Q ss_pred ----hCCCCCCCCCCCHHHHHHHHHHH----hccCceEEEEccccCc--ccccccc---ccCCCCcEEEEecC-Cccccc
Q 003513 148 ----IGLCNDSWKNKSLEEKAHDIFKT----LSKKKFALLLDDLWER--VDLKKIG---VPLPKNSAVVFTTR-FVDVCG 213 (814)
Q Consensus 148 ----l~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~--~~~~~~~---~~~~~~~~iiiTtR-~~~~~~ 213 (814)
+.+.. ......++....+... ..++.-++|||+++.. .....++ ..-+.++++|++|. ...+..
T Consensus 92 hpDviEIdA--as~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlp 169 (700)
T PRK12323 92 FVDYIEMDA--ASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 (700)
T ss_pred CCcceEecc--cccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhh
Confidence 00000 0111222222222111 1356679999999865 2223332 22233566555554 333322
Q ss_pred c-CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHH
Q 003513 214 G-MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITI 271 (814)
Q Consensus 214 ~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 271 (814)
. ......+.++.++.++..+.+.+.+.......+ .+....|++.++|.|.-...+
T Consensus 170 TIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d---~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 170 TVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE---VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 1 123568999999999999999887654332222 556788999999999755443
No 62
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.67 E-value=4.3e-07 Score=97.37 Aligned_cols=192 Identities=13% Similarity=0.130 Sum_probs=110.7
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCC-eEEEEEECCccCHHHHHHHHHH--
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFD-YVIWVVVSKDLQLEKIQETIGK-- 146 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~-- 146 (814)
..++|++..++++..++..+ ..+.+.++|+.|+||||+|+.+++... ...+. ..+.++++... ......+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~-~~~~lll~Gp~GtGKT~la~~~~~~l~--~~~~~~~~~~i~~~~~~--~~~~~~~~~~~ 89 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP-NLPHLLVQGPPGSGKTAAVRALARELY--GDPWENNFTEFNVADFF--DQGKKYLVEDP 89 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhc--CcccccceEEechhhhh--hcchhhhhcCc
Confidence 46899999999999988766 556788999999999999999999872 12222 23444443211 000000000
Q ss_pred ----HhCCCCCCCCCCCHHHHHHHHHHHh------ccCceEEEEccccCcc-----ccccccccCCCCcEEEEecCCcc-
Q 003513 147 ----KIGLCNDSWKNKSLEEKAHDIFKTL------SKKKFALLLDDLWERV-----DLKKIGVPLPKNSAVVFTTRFVD- 210 (814)
Q Consensus 147 ----~l~~~~~~~~~~~~~~~~~~l~~~l------~~~~~LlVlDdv~~~~-----~~~~~~~~~~~~~~iiiTtR~~~- 210 (814)
.++... . ...........+.+.. .+.+-+||+||++... .+..+....+..+++|+|+....
T Consensus 90 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 90 RFAHFLGTDK-R-IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred chhhhhhhhh-h-hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 000000 0 0000111122221111 1345589999997542 12222223344677887775432
Q ss_pred ccccC-CccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHH
Q 003513 211 VCGGM-EARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITI 271 (814)
Q Consensus 211 ~~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 271 (814)
+...+ .....+++.+++.++...++.+.+.......+ .+....+++.++|.+-.+...
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~---~~al~~l~~~~~gdlr~l~~~ 226 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD---DDGLELIAYYAGGDLRKAILT 226 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 22111 22357899999999999999887654432222 678889999999987665443
No 63
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=5.6e-07 Score=102.59 Aligned_cols=178 Identities=15% Similarity=0.154 Sum_probs=109.1
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCC-------------------CCeEEEEE
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKD-------------------FDYVIWVV 130 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~-------------------f~~~~wv~ 130 (814)
..+||.+..++.|.+++..+.-...+.++|+.|+||||+|+.+++.+. .... |.-+++++
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln-ce~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN-CEQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc-CccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 468999999999999988762334558999999999999999999872 1111 11112221
Q ss_pred ECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhccCceEEEEccccCc--cccccc---cccCCCCcEEEE
Q 003513 131 VSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFK-TLSKKKFALLLDDLWER--VDLKKI---GVPLPKNSAVVF 204 (814)
Q Consensus 131 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~--~~~~~~---~~~~~~~~~iii 204 (814)
......+.. ..++...+.. -..+++-++|||+++.. .....+ ....+...++|+
T Consensus 95 Aas~~kVDd--------------------IReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFIL 154 (944)
T PRK14949 95 AASRTKVDD--------------------TRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLL 154 (944)
T ss_pred cccccCHHH--------------------HHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 111111111 1111211111 12467789999999765 233332 232344666666
Q ss_pred ecCCc-ccccc-CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHH
Q 003513 205 TTRFV-DVCGG-MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITI 271 (814)
Q Consensus 205 TtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 271 (814)
+|.+. .+... ......+++++|+.++....+.+.+....... ..+....|++.++|.|.-+..+
T Consensus 155 aTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~---edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 155 ATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPF---EAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred ECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 55543 33211 12346899999999999999988765432222 2677889999999988755444
No 64
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.64 E-value=6.5e-07 Score=89.38 Aligned_cols=174 Identities=18% Similarity=0.167 Sum_probs=105.4
Q ss_pred cccchhHHHHH--HHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHh
Q 003513 71 TVVGLQSQLEQ--VWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKI 148 (814)
Q Consensus 71 ~~vGr~~~~~~--l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 148 (814)
++||.+..+-+ +...+.+.+..+.+.+||++|+||||||+.++..- +.+- +.||..|....-.+-.+.|.++-
T Consensus 139 dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts---k~~S--yrfvelSAt~a~t~dvR~ife~a 213 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS---KKHS--YRFVELSATNAKTNDVRDIFEQA 213 (554)
T ss_pred HhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc---CCCc--eEEEEEeccccchHHHHHHHHHH
Confidence 46776654422 33333333488999999999999999999999886 3322 56777665443333333333321
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccC--ccccccccccCCCCcEEEE--ecCCccc---cccCCccceE
Q 003513 149 GLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWE--RVDLKKIGVPLPKNSAVVF--TTRFVDV---CGGMEARRMF 221 (814)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~~~~~~~~~~~iii--TtR~~~~---~~~~~~~~~~ 221 (814)
. =...+.++|.+|.+|.|.. ..+-+.|......|.-++| ||.++.. ...+....++
T Consensus 214 q-----------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~Vf 276 (554)
T KOG2028|consen 214 Q-----------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVF 276 (554)
T ss_pred H-----------------HHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhcccee
Confidence 1 0122456889999999963 4555555444444766665 7777654 2233456789
Q ss_pred EeccCCHHhHHHHHHHHhc---cccc---cCCC----ChHHHHHHHHHHcCCChH
Q 003513 222 KVACLSDEDAWELFREKVG---EETI---ESHH----SLPELAQTVAKECRGLPL 266 (814)
Q Consensus 222 ~l~~L~~~ea~~l~~~~~~---~~~~---~~~~----~~~~~~~~i~~~~~g~Pl 266 (814)
.|++|+.++...++.+... .... ..+. -...+..-++..|+|-..
T Consensus 277 vLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 277 VLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred EeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 9999999999999987432 2111 1111 123445566667777554
No 65
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=9.5e-10 Score=106.36 Aligned_cols=161 Identities=20% Similarity=0.159 Sum_probs=72.5
Q ss_pred cCEEEecCCCCc--ccChhhhcCCCCceeccccccccceeCccccCCCcccceeeccccCcccchhhhchHHHHcCCCCc
Q 003513 499 LQLLDISNTSVT--ELPEDLKALVNLKCLNLVWAKELVVVPQQLLSNFSRLRVLRMFATGFLLSSWHENVAEELLGLKYL 576 (814)
Q Consensus 499 L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L 576 (814)
|++|||+++.|+ ++---+..+.+|+.|.+.++..-..+... +.+-.+|+.|+++.|+-+.. ...---+.+++.|
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~---n~~~ll~~scs~L 262 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTE---NALQLLLSSCSRL 262 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccch---hHHHHHHHhhhhH
Confidence 566666666554 34334455555666655555433323222 44455555555555433111 1111122344444
Q ss_pred cEEEEEecChhhHHHHhccccccccceeeeecccCCCCcccccCccCCCCCcEEEeccCCCcceEEecccccccccCCcc
Q 003513 577 EVLEISFRSFEAYQTFLSSQKLRSCTHALLLHRFDREESIDVADLADLEQLNTLDFYGCGCIKGLKIDCNDMVQKSRQPY 656 (814)
Q Consensus 577 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 656 (814)
..|+++++....... + +.+..++ ++|..|+|+||...- ...... .-..
T Consensus 263 ~~LNlsWc~l~~~~V----------------------t-v~V~his--e~l~~LNlsG~rrnl--~~sh~~-----tL~~ 310 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKV----------------------T-VAVAHIS--ETLTQLNLSGYRRNL--QKSHLS-----TLVR 310 (419)
T ss_pred hhcCchHhhccchhh----------------------h-HHHhhhc--hhhhhhhhhhhHhhh--hhhHHH-----HHHH
Confidence 444444443221110 0 0011222 567777777765211 000000 0012
Q ss_pred ccCCccEEeeecCccccc--ccccccCCCCcEEEEecChhh
Q 003513 657 VFRSLEKVTVRFCRNLRH--LTFLVFAPNLKSISVRYCDDM 695 (814)
Q Consensus 657 ~~~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~l~~c~~l 695 (814)
.+++|..|+|++|..++. +..+.+|+.|++|.++.|..+
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC
Confidence 456666666666665553 123445666666666666543
No 66
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=1.5e-06 Score=91.47 Aligned_cols=175 Identities=14% Similarity=0.190 Sum_probs=110.5
Q ss_pred cccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhcc---CCCCCCeEEEEE-ECCccCHHHHHHHHHH
Q 003513 71 TVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVD---NPKDFDYVIWVV-VSKDLQLEKIQETIGK 146 (814)
Q Consensus 71 ~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~---~~~~f~~~~wv~-~~~~~~~~~~~~~i~~ 146 (814)
.++|.+..++.+.+.+..+.-.+...++|+.|+||||+|+.++..... ...++|...|.. -+....++++.. +.+
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~-~~~ 83 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRN-IIE 83 (313)
T ss_pred hccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHH-HHH
Confidence 578999999999999987744567789999999999999999986521 134556555543 122223333222 222
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCc--cccccc---cccCCCCcEEEEecCCcccc-cc-CCccc
Q 003513 147 KIGLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWER--VDLKKI---GVPLPKNSAVVFTTRFVDVC-GG-MEARR 219 (814)
Q Consensus 147 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~~---~~~~~~~~~iiiTtR~~~~~-~~-~~~~~ 219 (814)
.+... -..+++-++|+|+++.. .....+ ..-.++++.+|++|.+.... .. .....
T Consensus 84 ~~~~~------------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~ 145 (313)
T PRK05564 84 EVNKK------------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQ 145 (313)
T ss_pred HHhcC------------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhce
Confidence 22111 01245667777777543 333333 23334588888888655422 11 12356
Q ss_pred eEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHH
Q 003513 220 MFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITI 271 (814)
Q Consensus 220 ~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 271 (814)
.+++.++++++....+.+...... .+.+..++..++|.|..+...
T Consensus 146 ~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 146 IYKLNRLSKEEIEKFISYKYNDIK-------EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred eeeCCCcCHHHHHHHHHHHhcCCC-------HHHHHHHHHHcCCCHHHHHHH
Confidence 899999999999888876643221 455778899999998765433
No 67
>PLN03025 replication factor C subunit; Provisional
Probab=98.61 E-value=5.8e-07 Score=94.81 Aligned_cols=177 Identities=14% Similarity=0.153 Sum_probs=106.9
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCC-eEEEEEECCccCHHHHHHHHHHHh
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFD-YVIWVVVSKDLQLEKIQETIGKKI 148 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l 148 (814)
.+++|.++.++.|..++..+ ..+.+.++|++|+||||+|+.+++... ...|. .++-+..++......+...+ ...
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~-~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~~vr~~i-~~~ 88 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG-NMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGIDVVRNKI-KMF 88 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHHHHHHHH-HHH
Confidence 45899999898888877665 566788999999999999999999862 22232 22222333322222222111 111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCcc-----ccccccccCCCCcEEEEecCCcc-cccc-CCccceE
Q 003513 149 GLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWERV-----DLKKIGVPLPKNSAVVFTTRFVD-VCGG-MEARRMF 221 (814)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----~~~~~~~~~~~~~~iiiTtR~~~-~~~~-~~~~~~~ 221 (814)
.... . ..-.++.-++|||+++... .+.......+..+++|+++.... +... ......+
T Consensus 89 ~~~~---~------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i 153 (319)
T PLN03025 89 AQKK---V------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIV 153 (319)
T ss_pred Hhcc---c------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcc
Confidence 0000 0 0001346799999997652 12222233344677777665332 2111 1124579
Q ss_pred EeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHH
Q 003513 222 KVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLAL 268 (814)
Q Consensus 222 ~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 268 (814)
+++++++++....+...+.......+ ++....|++.++|-...+
T Consensus 154 ~f~~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 154 RFSRLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 99999999999999888765443333 667888999998866444
No 68
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=1.7e-06 Score=95.66 Aligned_cols=190 Identities=19% Similarity=0.150 Sum_probs=109.1
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhC
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIG 149 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 149 (814)
.+++|.+..++.|..++..+.-...+.++|+.|+||||+|+.+++.. ...+.+...+|.+.+... +......-...++
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l-~c~~~~~~~cg~C~sc~~-i~~~~h~dv~el~ 91 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV-NCSGEDPKPCGECESCLA-VRRGAHPDVLEID 91 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH-hccCCCCCCCCcChhhHH-HhcCCCCceEEec
Confidence 45899999999999988877334566999999999999999999987 211222223333321100 0000000000000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHh-----ccCceEEEEccccCc--cccccccccC---CCCcEEEEecC-CccccccC-Cc
Q 003513 150 LCNDSWKNKSLEEKAHDIFKTL-----SKKKFALLLDDLWER--VDLKKIGVPL---PKNSAVVFTTR-FVDVCGGM-EA 217 (814)
Q Consensus 150 ~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~~~~~~---~~~~~iiiTtR-~~~~~~~~-~~ 217 (814)
.. .....+. +..+.+.+ .+++-++|+|+++.. ..+..+...+ +....+|++|. ...+.... ..
T Consensus 92 ~~----~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 92 AA----SNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred cc----ccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc
Confidence 00 0111111 12222222 346679999999754 2233332222 23455555554 33332211 23
Q ss_pred cceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHH
Q 003513 218 RRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALI 269 (814)
Q Consensus 218 ~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 269 (814)
...+++.+++.++..+.+.+.+.......+ ++....|++.++|.+.-+.
T Consensus 167 c~~~~f~~ls~~el~~~L~~i~~~egi~i~---~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 167 TQHFRFRRLTEEEIAGKLRRLLEAEGREAE---PEALQLVARLADGAMRDAE 215 (504)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 568999999999999999988754432222 6778899999999886553
No 69
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.60 E-value=6.7e-07 Score=88.25 Aligned_cols=183 Identities=17% Similarity=0.175 Sum_probs=103.8
Q ss_pred Ccccch-hHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHH
Q 003513 70 PTVVGL-QSQLEQVWRCLVQE--PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGK 146 (814)
Q Consensus 70 ~~~vGr-~~~~~~l~~~L~~~--~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 146 (814)
..++|- .+..-.....+.++ .....+.|+|..|+|||.|++++++...+... -..+++++ ..++...+..
T Consensus 9 nfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~-~~~v~y~~------~~~f~~~~~~ 81 (219)
T PF00308_consen 9 NFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHP-GKRVVYLS------AEEFIREFAD 81 (219)
T ss_dssp CS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCT-TS-EEEEE------HHHHHHHHHH
T ss_pred cCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccc-cccceeec------HHHHHHHHHH
Confidence 344574 33333444444443 23457899999999999999999998732222 23566764 3455555555
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCccc---ccc-cc---cc-CCCCcEEEEecCCccc-------
Q 003513 147 KIGLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWERVD---LKK-IG---VP-LPKNSAVVFTTRFVDV------- 211 (814)
Q Consensus 147 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~---~~~-~~---~~-~~~~~~iiiTtR~~~~------- 211 (814)
.+.. ... ..+.+.++ .-=+|++||++.... ++. +. .. ...|.+||+|++....
T Consensus 82 ~~~~-------~~~----~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~ 149 (219)
T PF00308_consen 82 ALRD-------GEI----EEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLP 149 (219)
T ss_dssp HHHT-------TSH----HHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-H
T ss_pred HHHc-------ccc----hhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccCh
Confidence 4421 111 23333344 344889999976422 111 11 11 1237899999964422
Q ss_pred --cccCCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHHHH
Q 003513 212 --CGGMEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIGRA 274 (814)
Q Consensus 212 --~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 274 (814)
..++...-+++++++++++-.+++.+++.......+ ++++.-|++.+.+..-.+..+-..
T Consensus 150 ~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~---~~v~~~l~~~~~~~~r~L~~~l~~ 211 (219)
T PF00308_consen 150 DLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELP---EEVIEYLARRFRRDVRELEGALNR 211 (219)
T ss_dssp HHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S----HHHHHHHHHHTTSSHHHHHHHHHH
T ss_pred hhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCc---HHHHHHHHHhhcCCHHHHHHHHHH
Confidence 122334568999999999999999999876554444 677777888777666655554433
No 70
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.60 E-value=1.5e-06 Score=99.91 Aligned_cols=173 Identities=21% Similarity=0.273 Sum_probs=100.8
Q ss_pred CcccchhHHHH---HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHH
Q 003513 70 PTVVGLQSQLE---QVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGK 146 (814)
Q Consensus 70 ~~~vGr~~~~~---~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 146 (814)
.+|+|++..+. .+.+.+..+ ....+.|+|++|+||||+|+.+++.. ...|. .++... ..+.
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~-~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~---~lna~~-~~i~-------- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD-RVGSLILYGPPGVGKTTLARIIANHT---RAHFS---SLNAVL-AGVK-------- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHHHHHh---cCcce---eehhhh-hhhH--------
Confidence 45899988774 455555555 66788999999999999999999886 34441 111110 0011
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHh--ccCceEEEEccccCc--cccccccccCCCCcEEEEe--cCCcc--ccc-cCCc
Q 003513 147 KIGLCNDSWKNKSLEEKAHDIFKTL--SKKKFALLLDDLWER--VDLKKIGVPLPKNSAVVFT--TRFVD--VCG-GMEA 217 (814)
Q Consensus 147 ~l~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~--~~~~~~~~~~~~~~~iiiT--tR~~~--~~~-~~~~ 217 (814)
+..+......+.+ .+++.+|||||++.. .+.+.+...+..+..++|+ |.+.. +.. ....
T Consensus 92 ------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTTenp~~~l~~aL~SR 159 (725)
T PRK13341 92 ------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVSR 159 (725)
T ss_pred ------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecCCChHhhhhhHhhcc
Confidence 1111122222222 246779999999754 3333443333445555553 34321 111 1112
Q ss_pred cceEEeccCCHHhHHHHHHHHhcccc----ccCCCChHHHHHHHHHHcCCChHHHHH
Q 003513 218 RRMFKVACLSDEDAWELFREKVGEET----IESHHSLPELAQTVAKECRGLPLALIT 270 (814)
Q Consensus 218 ~~~~~l~~L~~~ea~~l~~~~~~~~~----~~~~~~~~~~~~~i~~~~~g~Plal~~ 270 (814)
...+.+++++.++...++.+.+.... ...-.-.++....|++.+.|....+..
T Consensus 160 ~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln 216 (725)
T PRK13341 160 SRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLN 216 (725)
T ss_pred ccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHH
Confidence 45799999999999999988764110 001112266778899999987654433
No 71
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.60 E-value=8.5e-07 Score=99.06 Aligned_cols=178 Identities=13% Similarity=0.157 Sum_probs=108.2
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCC-------------------CCeEEEEE
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKD-------------------FDYVIWVV 130 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~-------------------f~~~~wv~ 130 (814)
.++||.+..++.|..++..+.-...+.++|+.|+||||+|+.++..+. .... |.-++.++
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln-C~~~~~~~pCg~C~sCr~i~~g~~~DvlEid 94 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN-CENAQHGEPCGVCQSCTQIDAGRYVDLLEID 94 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc-ccCCCCCCCCcccHHHHHHhccCccceEEEe
Confidence 468999999999999998773455789999999999999999988751 1111 11111222
Q ss_pred ECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhccCceEEEEccccCccc--c---ccccccCCCCcEEEE
Q 003513 131 VSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFK-TLSKKKFALLLDDLWERVD--L---KKIGVPLPKNSAVVF 204 (814)
Q Consensus 131 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~--~---~~~~~~~~~~~~iii 204 (814)
......++. ..+.+..... -..+++-++|||+++.... . .+.....+..+++|+
T Consensus 95 aAs~~gVd~--------------------IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fIL 154 (709)
T PRK08691 95 AASNTGIDN--------------------IREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFIL 154 (709)
T ss_pred ccccCCHHH--------------------HHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEE
Confidence 111111111 1111111110 0135667999999976432 2 222222234667777
Q ss_pred ecCCcc-cccc-CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHH
Q 003513 205 TTRFVD-VCGG-MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITI 271 (814)
Q Consensus 205 TtR~~~-~~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 271 (814)
+|.+.. +... .+....+++.+++.++....+.+.+.......+ .+....|++.++|.+.-+..+
T Consensus 155 aTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id---~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 155 ATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE---PPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred EeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHhCCCHHHHHHH
Confidence 665433 2211 123456888999999999999988765442222 667889999999988655443
No 72
>PF14516 AAA_35: AAA-like domain
Probab=98.59 E-value=1.3e-05 Score=84.69 Aligned_cols=199 Identities=14% Similarity=0.160 Sum_probs=123.2
Q ss_pred CCCCcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCc-----cCHHHHH
Q 003513 67 PTEPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKD-----LQLEKIQ 141 (814)
Q Consensus 67 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~ 141 (814)
+..+.+|+|...-+++.+.+.+. -..+.|.|+-.+|||+|...+.+.. ...-..++++++..- .+.+.++
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~--G~~~~I~apRq~GKTSll~~l~~~l---~~~~~~~v~id~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQP--GSYIRIKAPRQMGKTSLLLRLLERL---QQQGYRCVYIDLQQLGSAIFSDLEQFL 82 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcC--CCEEEEECcccCCHHHHHHHHHHHH---HHCCCEEEEEEeecCCCcccCCHHHHH
Confidence 34567899997788888888763 2689999999999999999999887 222335668876542 2345444
Q ss_pred ----HHHHHHhCCCCCC---C--CCCCHHHHHHHHHHHh-c--cCceEEEEccccCccccc----cccc-----------
Q 003513 142 ----ETIGKKIGLCNDS---W--KNKSLEEKAHDIFKTL-S--KKKFALLLDDLWERVDLK----KIGV----------- 194 (814)
Q Consensus 142 ----~~i~~~l~~~~~~---~--~~~~~~~~~~~l~~~l-~--~~~~LlVlDdv~~~~~~~----~~~~----------- 194 (814)
..+.+++++...- + ...........+.+.+ + +++.+|+||+++...... .+..
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence 4555555554310 0 1112223333444433 2 589999999997552211 1100
Q ss_pred -cCCCCcEEEE-ec-CCcccc----ccCCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHH
Q 003513 195 -PLPKNSAVVF-TT-RFVDVC----GGMEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLA 267 (814)
Q Consensus 195 -~~~~~~~iii-Tt-R~~~~~----~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 267 (814)
+....-++++ .+ +..... ........++|++++.+|...|+.++-..-. ....++|...+||+|.-
T Consensus 163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-------~~~~~~l~~~tgGhP~L 235 (331)
T PF14516_consen 163 NPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-------QEQLEQLMDWTGGHPYL 235 (331)
T ss_pred CcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-------HHHHHHHHHHHCCCHHH
Confidence 0001122222 22 111111 1123445799999999999999988743211 34489999999999999
Q ss_pred HHHHHHHhcc
Q 003513 268 LITIGRAMAY 277 (814)
Q Consensus 268 l~~~~~~l~~ 277 (814)
+..++..+..
T Consensus 236 v~~~~~~l~~ 245 (331)
T PF14516_consen 236 VQKACYLLVE 245 (331)
T ss_pred HHHHHHHHHH
Confidence 9999999865
No 73
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=5e-06 Score=88.01 Aligned_cols=190 Identities=16% Similarity=0.209 Sum_probs=127.1
Q ss_pred CCcccchhHHHHHHHHHHhc---CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHH
Q 003513 69 EPTVVGLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIG 145 (814)
Q Consensus 69 ~~~~vGr~~~~~~l~~~L~~---~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 145 (814)
+..+.+|+++++++...|.. ++...-+.|+|..|.|||+.++.+.+.........+ +++|++....+..+++..|+
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHH
Confidence 34589999999999998865 323445999999999999999999999833323333 89999999999999999999
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhc--cCceEEEEccccCcccc-----ccccccCCC-CcE--EEEecCCcc-----
Q 003513 146 KKIGLCNDSWKNKSLEEKAHDIFKTLS--KKKFALLLDDLWERVDL-----KKIGVPLPK-NSA--VVFTTRFVD----- 210 (814)
Q Consensus 146 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~-----~~~~~~~~~-~~~--iiiTtR~~~----- 210 (814)
.+++... .......+....+.+.+. ++.+++|||+++....- -.+...... .++ ||..+-+..
T Consensus 95 ~~~~~~p--~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 95 NKLGKVP--LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HHcCCCC--CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHh
Confidence 9996222 133455666677777774 47899999999765322 122111111 333 333443332
Q ss_pred ---ccccCCccceEEeccCCHHhHHHHHHHHhcc---ccccCCCChHHHHHHHHHHcCC
Q 003513 211 ---VCGGMEARRMFKVACLSDEDAWELFREKVGE---ETIESHHSLPELAQTVAKECRG 263 (814)
Q Consensus 211 ---~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~---~~~~~~~~~~~~~~~i~~~~~g 263 (814)
+...++.. .+..++-+.+|-.+++..++.. .. ..++..-+.+..++..-+|
T Consensus 173 d~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~-~~~~~vl~lia~~~a~~~G 229 (366)
T COG1474 173 DPRVKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAG-VIDDDVLKLIAALVAAESG 229 (366)
T ss_pred hhhhhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCC-CcCccHHHHHHHHHHHcCc
Confidence 22333333 3889999999999999988742 22 3344445555555555554
No 74
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.58 E-value=1.8e-06 Score=91.87 Aligned_cols=177 Identities=15% Similarity=0.173 Sum_probs=106.9
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEE--CCccCHHHHHHHHHHH
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVV--SKDLQLEKIQETIGKK 147 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~ 147 (814)
.+++|+++.++.+..++..+ ..+.+.|+|+.|+||||+|+.+++... ...+. ..++.+ +.......+...+...
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~-~~~~~ll~G~~G~GKt~~~~~l~~~l~--~~~~~-~~~i~~~~~~~~~~~~~~~~i~~~ 92 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK-NMPHLLFAGPPGTGKTTAALALARELY--GEDWR-ENFLELNASDERGIDVIRNKIKEF 92 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHc--CCccc-cceEEeccccccchHHHHHHHHHH
Confidence 45899999999999988765 556689999999999999999999862 12221 122222 2222222111111111
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCcc-----ccccccccCCCCcEEEEecCCcc-cccc-CCccce
Q 003513 148 IGLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWERV-----DLKKIGVPLPKNSAVVFTTRFVD-VCGG-MEARRM 220 (814)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----~~~~~~~~~~~~~~iiiTtR~~~-~~~~-~~~~~~ 220 (814)
..... .....+-++|+|+++... .+..+....+..+.+|+++.... +... ......
T Consensus 93 ~~~~~-----------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 93 ARTAP-----------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred HhcCC-----------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhe
Confidence 00000 001245689999986542 23333233344677777664322 2111 122347
Q ss_pred EEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHH
Q 003513 221 FKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALIT 270 (814)
Q Consensus 221 ~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 270 (814)
+++.+++.++....+...+.......+ ++....+++.++|.+.-+..
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~~~i~---~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEGIEIT---DDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 899999999999999888765442222 67788999999998876433
No 75
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2.5e-09 Score=103.46 Aligned_cols=182 Identities=21% Similarity=0.232 Sum_probs=126.9
Q ss_pred CcccEEEccCCcccc--ccCcccccccccCEEEecCCCCc-ccChhhhcCCCCceeccccccccceeC-ccccCCCcccc
Q 003513 473 SCLTVLKMSDNIMLR--QLPMGISKLVSLQLLDISNTSVT-ELPEDLKALVNLKCLNLVWAKELVVVP-QQLLSNFSRLR 548 (814)
Q Consensus 473 ~~L~~L~L~~~~~~~--~lp~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~p-~~~i~~l~~L~ 548 (814)
..|++|||++. .++ .+..-++.|.+|+.|++.+..+. .+-..+.+-.+|+.|+++.|.-++... .-++.+|+.|.
T Consensus 185 sRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 46999999998 554 34455778899999999999887 566678888999999999997655443 23468899999
Q ss_pred eeeccccCcccchhhhchHHH-HcCC-CCccEEEEEecChhhHHHHhccccccccceeeeecccCCCCcccccC-ccCCC
Q 003513 549 VLRMFATGFLLSSWHENVAEE-LLGL-KYLEVLEISFRSFEAYQTFLSSQKLRSCTHALLLHRFDREESIDVAD-LADLE 625 (814)
Q Consensus 549 ~L~l~~~~~~~~~~~~~~~~~-l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~-l~~l~ 625 (814)
.|++++|..... .... +.+. ++|..|+++++...-.. -.++. ..+++
T Consensus 264 ~LNlsWc~l~~~-----~Vtv~V~hise~l~~LNlsG~rrnl~~-------------------------sh~~tL~~rcp 313 (419)
T KOG2120|consen 264 ELNLSWCFLFTE-----KVTVAVAHISETLTQLNLSGYRRNLQK-------------------------SHLSTLVRRCP 313 (419)
T ss_pred hcCchHhhccch-----hhhHHHhhhchhhhhhhhhhhHhhhhh-------------------------hHHHHHHHhCC
Confidence 999999987321 1111 1111 46777777754321100 01122 24579
Q ss_pred CCcEEEeccCCCcceEEecccccccccCCccccCCccEEeeecCccccc--ccccccCCCCcEEEEecChh
Q 003513 626 QLNTLDFYGCGCIKGLKIDCNDMVQKSRQPYVFRSLEKVTVRFCRNLRH--LTFLVFAPNLKSISVRYCDD 694 (814)
Q Consensus 626 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~l~~c~~ 694 (814)
+|.+||++.|..+++ +.. ..+..|+.|++|.++.|..+.- +-.+...|+|.+|++.+|-.
T Consensus 314 ~l~~LDLSD~v~l~~---~~~------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 314 NLVHLDLSDSVMLKN---DCF------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred ceeeeccccccccCc---hHH------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 999999999988774 221 1224689999999999986532 22356789999999999754
No 76
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=2.5e-06 Score=93.92 Aligned_cols=192 Identities=16% Similarity=0.139 Sum_probs=108.0
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCe-EEEEEECCccCHHHHHHHHHHHh
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDY-VIWVVVSKDLQLEKIQETIGKKI 148 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l 148 (814)
.+++|.+..++.+...+..+.-.+.+.++|+.|+||||+|+.+++... ....... --+..+. .-.....+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln-c~~~~~~~~~~~~C~----~C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN-CSALITENTTIKTCE----QCTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CccccccCcCcCCCC----CChHHHHHhcCC
Confidence 458999999999988887773456889999999999999999999872 1111000 0000000 000111111000
Q ss_pred CCCC---CCCCCCCHHHHHHHHHHH----hccCceEEEEccccCc--ccccccc---ccCCCCcEEEE-ecCCccccccC
Q 003513 149 GLCN---DSWKNKSLEEKAHDIFKT----LSKKKFALLLDDLWER--VDLKKIG---VPLPKNSAVVF-TTRFVDVCGGM 215 (814)
Q Consensus 149 ~~~~---~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~--~~~~~~~---~~~~~~~~iii-TtR~~~~~~~~ 215 (814)
.... +.......++....+... +.+++-++|+|+++.. ..+..+. ...+..+.+|+ ||+...+....
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI 175 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATI 175 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHH
Confidence 0000 000111222222211111 2356779999999864 2233332 22233566655 44444443221
Q ss_pred -CccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHH
Q 003513 216 -EARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALI 269 (814)
Q Consensus 216 -~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 269 (814)
.....+++.+++.+|....+...+.......+ ++....|++.++|.+.-+.
T Consensus 176 ~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie---~eAL~~Ia~~s~GslR~al 227 (507)
T PRK06645 176 ISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD---IEALRIIAYKSEGSARDAV 227 (507)
T ss_pred HhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 23457999999999999999988865442222 5677889999999875543
No 77
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.56 E-value=4.7e-07 Score=84.05 Aligned_cols=120 Identities=23% Similarity=0.156 Sum_probs=73.5
Q ss_pred cchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCC
Q 003513 73 VGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCN 152 (814)
Q Consensus 73 vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 152 (814)
+|++..++++...+... ..+.+.|+|++|+||||+|+.+++.. ......++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~-~~~~v~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~----- 71 (151)
T cd00009 1 VGQEEAIEALREALELP-PPKNLLLYGPPGTGKTTLARAIANEL---FRPGAPFLYLNASDLLEGLVVAELFGHF----- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHh---hcCCCCeEEEehhhhhhhhHHHHHhhhh-----
Confidence 47889999999888765 45789999999999999999999987 2333456777655433222221111100
Q ss_pred CCCCCCCHHHHHHHHHHHhccCceEEEEccccCc-----cccccccccC------CCCcEEEEecCCcc
Q 003513 153 DSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWER-----VDLKKIGVPL------PKNSAVVFTTRFVD 210 (814)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----~~~~~~~~~~------~~~~~iiiTtR~~~ 210 (814)
............++.++|+||++.. ..+....... ..+..||+||....
T Consensus 72 ---------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ---------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ---------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999853 2222221111 34788888888544
No 78
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=2.6e-06 Score=94.28 Aligned_cols=181 Identities=18% Similarity=0.176 Sum_probs=109.0
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCC------------------CCCCeEEEEEE
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP------------------KDFDYVIWVVV 131 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~------------------~~f~~~~wv~~ 131 (814)
.+++|.+..++.+...+..+.-...+.++|+.|+||||+|+.+++...... ..|..+++++.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 468999999999999998763445688999999999999999998762100 01222233322
Q ss_pred CCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-hccCceEEEEccccCcc--ccc---cccccCCCCcEEEE-
Q 003513 132 SKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKT-LSKKKFALLLDDLWERV--DLK---KIGVPLPKNSAVVF- 204 (814)
Q Consensus 132 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~--~~~---~~~~~~~~~~~iii- 204 (814)
.....++++ .+....+... ..+++-++|+|+++... ... .+....+..+.+|+
T Consensus 96 as~~gvd~i--------------------r~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~ 155 (546)
T PRK14957 96 ASRTGVEET--------------------KEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILA 155 (546)
T ss_pred ccccCHHHH--------------------HHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEE
Confidence 222122111 1222222111 23567799999997542 222 22233344565665
Q ss_pred ecCCcccccc-CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChH-HHHHHHH
Q 003513 205 TTRFVDVCGG-MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPL-ALITIGR 273 (814)
Q Consensus 205 TtR~~~~~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 273 (814)
||....+... ......+++++++.++....+.+.+....... .++....|++.++|.+. |+..+-.
T Consensus 156 Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~---e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 156 TTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINS---DEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred ECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4443333322 23357899999999999988887664433222 26677889999999765 4444433
No 79
>PRK05642 DNA replication initiation factor; Validated
Probab=98.54 E-value=1e-06 Score=88.07 Aligned_cols=172 Identities=16% Similarity=0.216 Sum_probs=100.4
Q ss_pred cccchhHHHHHHHHHHhcC-C--CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHH
Q 003513 71 TVVGLQSQLEQVWRCLVQE-P--AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKK 147 (814)
Q Consensus 71 ~~vGr~~~~~~l~~~L~~~-~--~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 147 (814)
.++|......+..+.+..+ + ....+.|+|..|+|||+|++++++... .....++|++..+ +...
T Consensus 21 F~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~---~~~~~v~y~~~~~------~~~~---- 87 (234)
T PRK05642 21 YYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFE---QRGEPAVYLPLAE------LLDR---- 87 (234)
T ss_pred cCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEeeHHH------HHhh----
Confidence 3446554444333333221 1 236789999999999999999998762 2234567776422 2111
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCc---ccccc-c---cccC-CCCcEEEEecCCccc--------
Q 003513 148 IGLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWER---VDLKK-I---GVPL-PKNSAVVFTTRFVDV-------- 211 (814)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~~~~-~---~~~~-~~~~~iiiTtR~~~~-------- 211 (814)
...+.+.+++-. +||+||+... ..++. + .... ..|..||+|++....
T Consensus 88 ----------------~~~~~~~~~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~ 150 (234)
T PRK05642 88 ----------------GPELLDNLEQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPD 150 (234)
T ss_pred ----------------hHHHHHhhhhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCcc
Confidence 012233333333 6788999633 22221 2 1111 237788998874332
Q ss_pred -cccCCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHHHHh
Q 003513 212 -CGGMEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIGRAM 275 (814)
Q Consensus 212 -~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 275 (814)
..++....+++++++++++-.+++..++.......+ +++..-|++.+.|-.-.+..+-..|
T Consensus 151 L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 151 LKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLT---DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 122334467899999999999999977644332233 6777778888777666655544333
No 80
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.54 E-value=1.6e-07 Score=85.14 Aligned_cols=116 Identities=22% Similarity=0.263 Sum_probs=78.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccC--CCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDN--PKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIF 168 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 168 (814)
+.+++.|+|.+|+|||++++.++++.... ...-..++|+.+....+...+...|+.+++..... ..+..+....+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHH
Confidence 35789999999999999999999986210 00134678999888889999999999999876532 356777888888
Q ss_pred HHhccCce-EEEEccccCc-c--ccccccccC-CCCcEEEEecCC
Q 003513 169 KTLSKKKF-ALLLDDLWER-V--DLKKIGVPL-PKNSAVVFTTRF 208 (814)
Q Consensus 169 ~~l~~~~~-LlVlDdv~~~-~--~~~~~~~~~-~~~~~iiiTtR~ 208 (814)
+.+...+. +||+|+++.. . .++.+..-. ..+.++|+..+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 88877655 9999999765 2 122221111 336777776664
No 81
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=4.3e-06 Score=88.76 Aligned_cols=195 Identities=12% Similarity=0.046 Sum_probs=110.1
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCC-CCCe-EEEEEECCccCHHHHHHHHHHH
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPK-DFDY-VIWVVVSKDLQLEKIQETIGKK 147 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~-~f~~-~~wv~~~~~~~~~~~~~~i~~~ 147 (814)
..++|.+..++.+.+.+..+.-...+.++|+.|+||+|+|..+++...-... .... ..=...-.........+.|...
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~ 98 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAG 98 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHcc
Confidence 5689999999999999988734556889999999999999999887631110 0000 0000000000001111222111
Q ss_pred hCCC-------CCCC-----CCCCHHHHHHHHHHHhc-----cCceEEEEccccCc--cc---cccccccCCCCcEEEEe
Q 003513 148 IGLC-------NDSW-----KNKSLEEKAHDIFKTLS-----KKKFALLLDDLWER--VD---LKKIGVPLPKNSAVVFT 205 (814)
Q Consensus 148 l~~~-------~~~~-----~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~--~~---~~~~~~~~~~~~~iiiT 205 (814)
-... .+.. ..-.+++ +..+.+.+. +++.++|+||++.. .. +-+.....+.++.+|++
T Consensus 99 ~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~ 177 (365)
T PRK07471 99 AHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLV 177 (365)
T ss_pred CCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 0000 0000 1112233 334444442 46779999999754 22 22222333446667776
Q ss_pred cCCcc-cccc-CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHH
Q 003513 206 TRFVD-VCGG-MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIG 272 (814)
Q Consensus 206 tR~~~-~~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 272 (814)
|.+.. +... ......+.+.+++.++..+++.+...... .+....+++.++|.|+.+..+.
T Consensus 178 t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-------~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 178 SHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-------DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred ECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-------HHHHHHHHHHcCCCHHHHHHHh
Confidence 66553 2211 22356899999999999999988643211 2333788999999998765543
No 82
>PRK09087 hypothetical protein; Validated
Probab=98.53 E-value=1.3e-06 Score=86.46 Aligned_cols=143 Identities=15% Similarity=0.160 Sum_probs=91.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKT 170 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 170 (814)
..+.+.|+|+.|+|||+|++.++... . ..+++.. .+...+...
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~---~-----~~~i~~~------~~~~~~~~~----------------------- 85 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS---D-----ALLIHPN------EIGSDAANA----------------------- 85 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc---C-----CEEecHH------HcchHHHHh-----------------------
Confidence 34679999999999999999988765 1 1233221 111111111
Q ss_pred hccCceEEEEccccCcc----cccccccc-CCCCcEEEEecCCc---------cccccCCccceEEeccCCHHhHHHHHH
Q 003513 171 LSKKKFALLLDDLWERV----DLKKIGVP-LPKNSAVVFTTRFV---------DVCGGMEARRMFKVACLSDEDAWELFR 236 (814)
Q Consensus 171 l~~~~~LlVlDdv~~~~----~~~~~~~~-~~~~~~iiiTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~l~~ 236 (814)
+.+ -+|++||++... .+-.+... ...|..||+|++.. .+..++....++++++++.++-.+++.
T Consensus 86 ~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 86 AAE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred hhc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 111 278889996431 12111111 22278899988742 233344556789999999999999999
Q ss_pred HHhccccccCCCChHHHHHHHHHHcCCChHHHHHHHHHh
Q 003513 237 EKVGEETIESHHSLPELAQTVAKECRGLPLALITIGRAM 275 (814)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 275 (814)
+++.......+ +++..-|++.+.|..-++..+-..+
T Consensus 164 ~~~~~~~~~l~---~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 164 KLFADRQLYVD---PHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHHHHcCCCCC---HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 98865443334 7788889998888887776544333
No 83
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=3.1e-06 Score=89.29 Aligned_cols=194 Identities=11% Similarity=0.083 Sum_probs=111.8
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCC-CCCeEEEEEECCccCHHHHHHHHHHH-
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPK-DFDYVIWVVVSKDLQLEKIQETIGKK- 147 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~- 147 (814)
..++|.++..+.+...+..+.....+.|+|+.|+||||+|..+++....... .+.... ...........+.+...
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~~i~~~~ 99 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWRQIAQGA 99 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHHHHHcCC
Confidence 4689999999999999988744567999999999999999999998732100 011110 00111111233333222
Q ss_pred ------hCCCCCCC-----CCCCHHHHHHHHHHHh-----ccCceEEEEccccCcc--c---cccccccCCCCcEE-EEe
Q 003513 148 ------IGLCNDSW-----KNKSLEEKAHDIFKTL-----SKKKFALLLDDLWERV--D---LKKIGVPLPKNSAV-VFT 205 (814)
Q Consensus 148 ------l~~~~~~~-----~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~---~~~~~~~~~~~~~i-iiT 205 (814)
+..+.+.. ..-..++ +..+.+.+ .+++-++|+|+++... . +-+.....+.+..+ ++|
T Consensus 100 hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 100 HPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 10000000 1112333 33444444 2466799999997542 1 22222223334554 455
Q ss_pred cCCccccccC-CccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHH
Q 003513 206 TRFVDVCGGM-EARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIG 272 (814)
Q Consensus 206 tR~~~~~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 272 (814)
++...+.... .....+++.+++.++..+++.+...... -.++....|++.++|.|.....+.
T Consensus 179 ~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 179 HSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4433332111 2346899999999999999988432111 124567889999999998765544
No 84
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=2.8e-06 Score=95.33 Aligned_cols=194 Identities=14% Similarity=0.154 Sum_probs=108.7
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCC-CCCeEEEEEECCccCHHHHHHHHHHHh
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPK-DFDYVIWVVVSKDLQLEKIQETIGKKI 148 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l 148 (814)
.++||-+..++.|.+++..+.-...+.++|+.|+||||+|+.+++.+.-... ....... .....-...+.|...-
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~g~ 91 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDSGR 91 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHcCC
Confidence 4689999999999999888744467799999999999999999887621000 0000000 0011111122221100
Q ss_pred CCC---CCCCCCCCHHHHHHHHHHHh-----ccCceEEEEccccCc--cccccc---cccCCCCcEEEEecCC-ccccc-
Q 003513 149 GLC---NDSWKNKSLEEKAHDIFKTL-----SKKKFALLLDDLWER--VDLKKI---GVPLPKNSAVVFTTRF-VDVCG- 213 (814)
Q Consensus 149 ~~~---~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~~---~~~~~~~~~iiiTtR~-~~~~~- 213 (814)
... .+.......++... +.+.. .++.-++|||+|+.. .....+ ....+....+|++|.+ ..+..
T Consensus 92 h~D~~eldaas~~~Vd~iRe-li~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~T 170 (618)
T PRK14951 92 FVDYTELDAASNRGVDEVQQ-LLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVT 170 (618)
T ss_pred CCceeecCcccccCHHHHHH-HHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHH
Confidence 000 00001112222211 11211 234568999999865 222222 2323346666665543 33321
Q ss_pred cCCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHH
Q 003513 214 GMEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITI 271 (814)
Q Consensus 214 ~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 271 (814)
.......+++++++.++..+.+.+.+...+...+ .+....|++.++|.+.-+..+
T Consensus 171 IlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie---~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 171 VLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE---PQALRLLARAARGSMRDALSL 225 (618)
T ss_pred HHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 1233578999999999999999888755442222 567788999999987655443
No 85
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.51 E-value=2.5e-07 Score=89.63 Aligned_cols=45 Identities=29% Similarity=0.423 Sum_probs=33.3
Q ss_pred ccchhHHHHHHHHHHh--cCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 72 VVGLQSQLEQVWRCLV--QEPAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 72 ~vGr~~~~~~l~~~L~--~~~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
||||+++++++...|. ..+..+.+.|+|++|+|||+|+++++...
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999993 33467899999999999999999999988
No 86
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.50 E-value=4.7e-06 Score=90.00 Aligned_cols=181 Identities=14% Similarity=0.169 Sum_probs=109.0
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccC-CC------------------CCCeEEEEE
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDN-PK------------------DFDYVIWVV 130 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~-~~------------------~f~~~~wv~ 130 (814)
..++|.+..++.+.+++..+.-.+.+.++|+.|+||||+|+.++...... .. +++ +++++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-VIEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEee
Confidence 46899999999999999876445578899999999999999998876211 00 122 22332
Q ss_pred ECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCc--cccccc---cccCCCCcEEEEe
Q 003513 131 VSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWER--VDLKKI---GVPLPKNSAVVFT 205 (814)
Q Consensus 131 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~~---~~~~~~~~~iiiT 205 (814)
........+ .+.+.+.+... -..+++-++|+|+++.. .....+ ....+..+.+|++
T Consensus 93 ~~~~~~~~~-~~~l~~~~~~~------------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 93 AASNNGVDD-IREILDNVKYA------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred ccccCCHHH-HHHHHHHHhcC------------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEE
Confidence 221111111 11111111100 01245568999998654 222222 2222346666666
Q ss_pred cCCcc-cccc-CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHHH
Q 003513 206 TRFVD-VCGG-MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIGR 273 (814)
Q Consensus 206 tR~~~-~~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 273 (814)
|.+.. +... ......+++.+++.++..+.+...+.......+ ++.+..+++.++|.|..+.....
T Consensus 154 ~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~~le 220 (355)
T TIGR02397 154 TTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALSLLD 220 (355)
T ss_pred eCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHHHHH
Confidence 65443 2111 123457889999999999999987754432222 57788899999999976655443
No 87
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=2.6e-06 Score=91.76 Aligned_cols=189 Identities=14% Similarity=0.089 Sum_probs=107.5
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhC
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIG 149 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 149 (814)
.++||.+..+..|..++..+.-...+.++|+.|+||||+|+.+++... .. .... ...+..... ...+.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln-ce-~~~~--~~pCg~C~s----C~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN-CE-NPIG--NEPCNECTS----CLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC-cc-cccC--ccccCCCcH----HHHHHccCC
Confidence 468999999999999988773234689999999999999999999872 11 1100 000111111 111111110
Q ss_pred CCC---CCCCCCCH---HHHHHHHHHH-hccCceEEEEccccCc--ccccccccc---CCCCcEEEEecC-Ccccccc-C
Q 003513 150 LCN---DSWKNKSL---EEKAHDIFKT-LSKKKFALLLDDLWER--VDLKKIGVP---LPKNSAVVFTTR-FVDVCGG-M 215 (814)
Q Consensus 150 ~~~---~~~~~~~~---~~~~~~l~~~-l~~~~~LlVlDdv~~~--~~~~~~~~~---~~~~~~iiiTtR-~~~~~~~-~ 215 (814)
... +....... .+....+... ..++.-++|||+++.. ..+.++... .+....+|.+|. ...+... .
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 000 00001111 1222222211 2356679999999754 233333222 223555554444 3333221 2
Q ss_pred CccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHH
Q 003513 216 EARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALI 269 (814)
Q Consensus 216 ~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 269 (814)
.....|.+.+++.++..+.+.+.+...+...+ ++....|++.++|.+.-+.
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e---~eAL~~Ia~~S~Gd~RdAL 220 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIENVQYD---QEGLFWIAKKGDGSVRDML 220 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCChHHHHH
Confidence 23467999999999999999888754432222 6778899999999886443
No 88
>PTZ00202 tuzin; Provisional
Probab=98.50 E-value=3.2e-06 Score=88.07 Aligned_cols=162 Identities=16% Similarity=0.167 Sum_probs=100.9
Q ss_pred ccCCCCCcccchhHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHH
Q 003513 64 DERPTEPTVVGLQSQLEQVWRCLVQE--PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQ 141 (814)
Q Consensus 64 ~~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 141 (814)
.-++..+.|+||++++.++...|.+. +..+++.|+|++|+|||||++.+.... . + ..++++.. +..+++
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l---~--~-~qL~vNpr---g~eElL 326 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE---G--M-PAVFVDVR---GTEDTL 326 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC---C--c-eEEEECCC---CHHHHH
Confidence 34455678999999999999999652 235699999999999999999999776 2 1 13333332 679999
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-----c-cCceEEEEccccCccccccc-----cccC-CCCcEEEEecCCc
Q 003513 142 ETIGKKIGLCNDSWKNKSLEEKAHDIFKTL-----S-KKKFALLLDDLWERVDLKKI-----GVPL-PKNSAVVFTTRFV 209 (814)
Q Consensus 142 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~-~~~~LlVlDdv~~~~~~~~~-----~~~~-~~~~~iiiTtR~~ 209 (814)
+.++.++|.+.. ....++...|.+.+ . +++.+||+-= .+-..+..+ .... ..-|+|++----+
T Consensus 327 r~LL~ALGV~p~----~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-reg~~l~rvyne~v~la~drr~ch~v~evple 401 (550)
T PTZ00202 327 RSVVKALGVPNV----EACGDLLDFISEACRRAKKMNGETPLLVLKL-REGSSLQRVYNEVVALACDRRLCHVVIEVPLE 401 (550)
T ss_pred HHHHHHcCCCCc----ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCCcHHHHHHHHHHHHccchhheeeeeehHh
Confidence 999999998432 22234444444433 2 5667777632 111111111 0000 0146666543322
Q ss_pred ccc---ccCCccceEEeccCCHHhHHHHHHHHh
Q 003513 210 DVC---GGMEARRMFKVACLSDEDAWELFREKV 239 (814)
Q Consensus 210 ~~~---~~~~~~~~~~l~~L~~~ea~~l~~~~~ 239 (814)
.+- ..+..-..|-+++++.++|.++..+..
T Consensus 402 slt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 402 SLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 221 112234578999999999998877654
No 89
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=3.2e-06 Score=92.18 Aligned_cols=179 Identities=16% Similarity=0.140 Sum_probs=109.4
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccC-C-----------------CCCCeEEEEEE
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDN-P-----------------KDFDYVIWVVV 131 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~-~-----------------~~f~~~~wv~~ 131 (814)
.++||.+..++.+.+.+..+.-.+.+.++|+.|+||||+|+.++....-. . ..+.-++.++.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida 92 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA 92 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec
Confidence 46899999999998888877334589999999999999999998754100 0 11122344444
Q ss_pred CCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCcc--cccc---ccccCCCCcEEEEec
Q 003513 132 SKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWERV--DLKK---IGVPLPKNSAVVFTT 206 (814)
Q Consensus 132 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~---~~~~~~~~~~iiiTt 206 (814)
+....++++.. +.+...- .-..+++-++|+|+++... .... .....++...+|++|
T Consensus 93 as~~~vddIR~-Iie~~~~------------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 93 ASNTSVDDIKV-ILENSCY------------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred ccCCCHHHHHH-HHHHHHh------------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 33333333221 1111100 0013466789999997542 2222 223233466666655
Q ss_pred C-Ccccccc-CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHH
Q 003513 207 R-FVDVCGG-MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALIT 270 (814)
Q Consensus 207 R-~~~~~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 270 (814)
. ...+... ......+++.+++.++..+.+.+.+......-+ ++....|++.++|.+..+..
T Consensus 154 te~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~---~eAL~lIa~~s~GslR~als 216 (491)
T PRK14964 154 TEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD---EESLKLIAENSSGSMRNALF 216 (491)
T ss_pred CChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 3 3333221 223567999999999999999988765442222 66778899999998865433
No 90
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.49 E-value=2.6e-06 Score=94.36 Aligned_cols=191 Identities=14% Similarity=0.152 Sum_probs=106.0
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhC
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIG 149 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 149 (814)
..++|++..++.+.+++..+.-.+.+.++|+.|+||||+|+.+++... -.. |... .....-...+.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~-C~~------~~~~-~~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN-CLN------PKDG-DCCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CCC------CCCC-CCCcccHHHHHHHcCCC
Confidence 468999999999999988764456788999999999999999998872 111 1100 00011111111111100
Q ss_pred CCC---CCCCCCCHHHHHHHHHHH-----hccCceEEEEccccCc--cccccc---cccCCCCcEEEEec-CCcccccc-
Q 003513 150 LCN---DSWKNKSLEEKAHDIFKT-----LSKKKFALLLDDLWER--VDLKKI---GVPLPKNSAVVFTT-RFVDVCGG- 214 (814)
Q Consensus 150 ~~~---~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~~~~~---~~~~~~~~~iiiTt-R~~~~~~~- 214 (814)
... +.......++. +.+.+. ..+++-++|+|+++.. .....+ ..-.+....+|++| ....+...
T Consensus 88 ~DiieIdaas~igVd~I-ReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI 166 (605)
T PRK05896 88 VDIVELDAASNNGVDEI-RNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTI 166 (605)
T ss_pred CceEEeccccccCHHHH-HHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHH
Confidence 000 00000111111 111111 1234457999999754 222222 22223355555544 33333211
Q ss_pred CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChH-HHHHHH
Q 003513 215 MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPL-ALITIG 272 (814)
Q Consensus 215 ~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~ 272 (814)
......+++.+++.++....+...+.......+ .+.+..+++.++|.+. |+..+-
T Consensus 167 ~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 167 ISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred HhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 223468999999999999999887654332222 5678889999999765 444433
No 91
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=4.1e-06 Score=91.89 Aligned_cols=184 Identities=20% Similarity=0.223 Sum_probs=106.5
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCC-C-----------------CCeEEEEEE
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPK-D-----------------FDYVIWVVV 131 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~-~-----------------f~~~~wv~~ 131 (814)
.++||.+..++.|...+..+.-.+.+.++|++|+||||+|+.+++....... . ...++.++.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~a 93 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDA 93 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeC
Confidence 4689999988888888776633356899999999999999999987621100 0 111222222
Q ss_pred CCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCc--ccccccc---ccCCCCcEEEEec
Q 003513 132 SKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWER--VDLKKIG---VPLPKNSAVVFTT 206 (814)
Q Consensus 132 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~~~---~~~~~~~~iiiTt 206 (814)
+....+..+. .+.+.... .-..+++-++|+|+++.. .....+. ...+....+|++|
T Consensus 94 a~~~gid~iR-~i~~~~~~------------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilat 154 (472)
T PRK14962 94 ASNRGIDEIR-KIRDAVGY------------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLAT 154 (472)
T ss_pred cccCCHHHHH-HHHHHHhh------------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 2222222221 12111100 012346679999999754 2222222 2222344444444
Q ss_pred CC-cccccc-CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCC-ChHHHHHHHHHh
Q 003513 207 RF-VDVCGG-MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRG-LPLALITIGRAM 275 (814)
Q Consensus 207 R~-~~~~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~~~l 275 (814)
.+ ..+... ......+++.+++.++....+.+.+.......+ ++....|++.++| .+.++..+....
T Consensus 155 tn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~---~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 155 TNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID---REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred CChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 33 233221 123468999999999999999888754332222 6677889988865 566766665543
No 92
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.49 E-value=8e-08 Score=105.42 Aligned_cols=172 Identities=30% Similarity=0.368 Sum_probs=145.0
Q ss_pred cEEEEcCCCcccCCCCccCcc-cEEEEEcccCCCcCCC-CCCCCCcccEEEcccCCCccccchhhccCCcccEEEccCCc
Q 003513 407 GFLVYAGSGLTKAPADVRGWE-MVRRLSLMKNSIENLP-TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNI 484 (814)
Q Consensus 407 ~~l~~~~~~~~~~p~~~~~~~-~l~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 484 (814)
..+...++.+..+|+...... +++.|++++|.+..+| .+..+++|+.|++++|.+..++.. ....+.|+.|++++|
T Consensus 119 ~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L~ls~N- 196 (394)
T COG4886 119 TSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLSGN- 196 (394)
T ss_pred eEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhh-hhhhhhhhheeccCC-
Confidence 456667788888977777774 9999999999999996 789999999999999999888875 448999999999999
Q ss_pred cccccCcccccccccCEEEecCCCCcccChhhhcCCCCceeccccccccceeCccccCCCcccceeeccccCcccchhhh
Q 003513 485 MLRQLPMGISKLVSLQLLDISNTSVTELPEDLKALVNLKCLNLVWAKELVVVPQQLLSNFSRLRVLRMFATGFLLSSWHE 564 (814)
Q Consensus 485 ~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~ 564 (814)
.+..+|..+..+.+|++|.+++|.+...+..+.++.++..|.+.++.. ..++.. ++.+.+|+.|++++|.+ .
T Consensus 197 ~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~-~~~~~~-~~~l~~l~~L~~s~n~i------~ 268 (394)
T COG4886 197 KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL-EDLPES-IGNLSNLETLDLSNNQI------S 268 (394)
T ss_pred ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee-eeccch-hccccccceeccccccc------c
Confidence 999999888888889999999998888888899999999999887754 444443 78999999999999876 2
Q ss_pred chHHHHcCCCCccEEEEEecChhhH
Q 003513 565 NVAEELLGLKYLEVLEISFRSFEAY 589 (814)
Q Consensus 565 ~~~~~l~~l~~L~~L~l~~~~~~~~ 589 (814)
.+.. +..+.+++.|+++++.....
T Consensus 269 ~i~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 269 SISS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cccc-ccccCccCEEeccCcccccc
Confidence 2222 88899999999998876543
No 93
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.48 E-value=3.1e-06 Score=95.19 Aligned_cols=192 Identities=15% Similarity=0.106 Sum_probs=108.9
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhC
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIG 149 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 149 (814)
.++||.+..++.|...+..+.-...+.++|+.|+||||+|+.+++... ....+. ......-...+.|...-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~-c~~~~~-------~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLN-CETGIT-------ATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhh-hccCCC-------CCCCCCCHHHHHHHcCCC
Confidence 468999999999999988773334568999999999999999998872 111100 000011112222211000
Q ss_pred CCC---CCCCCCCHHHH---HHHHHHH-hccCceEEEEccccCc--cccccc---cccCCCCcEEEEecCC-cccccc-C
Q 003513 150 LCN---DSWKNKSLEEK---AHDIFKT-LSKKKFALLLDDLWER--VDLKKI---GVPLPKNSAVVFTTRF-VDVCGG-M 215 (814)
Q Consensus 150 ~~~---~~~~~~~~~~~---~~~l~~~-l~~~~~LlVlDdv~~~--~~~~~~---~~~~~~~~~iiiTtR~-~~~~~~-~ 215 (814)
... +.......++. +..+... ..+++-++|||+++.. .....+ ....+...++|++|.+ ..+... .
T Consensus 88 ~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~ 167 (647)
T PRK07994 88 VDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 (647)
T ss_pred CCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHH
Confidence 000 00001112221 1111111 2456779999999755 222222 2333345666655544 333221 2
Q ss_pred CccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHH
Q 003513 216 EARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIG 272 (814)
Q Consensus 216 ~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 272 (814)
.....+.+++++.++..+.+.+.+....... .++....|++.++|.+.-+..+.
T Consensus 168 SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~---e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 168 SRCLQFHLKALDVEQIRQQLEHILQAEQIPF---EPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred hhheEeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 2357899999999999999988764332222 25667889999999887554443
No 94
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=3.9e-06 Score=93.82 Aligned_cols=179 Identities=16% Similarity=0.137 Sum_probs=106.8
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCC-------------------CCCeEEEEE
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPK-------------------DFDYVIWVV 130 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~-------------------~f~~~~wv~ 130 (814)
.++||.+..++.+..++..+.-...+.++|+.|+||||+|+.++.... ... .|.-+++++
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~-c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~ 94 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN-CETGVTATPCGVCSACLEIDSGRFVDLIEVD 94 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHhcCCCCceeEee
Confidence 468999999999999998773345678999999999999999988762 111 011122222
Q ss_pred ECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCccc--cc---cccccCCCCcEEEEe
Q 003513 131 VSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWERVD--LK---KIGVPLPKNSAVVFT 205 (814)
Q Consensus 131 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~---~~~~~~~~~~~iiiT 205 (814)
.+....++++. .+.+.... .-..+++-++|+|+++.... .. +.....+..+.+|++
T Consensus 95 ~~~~~~vd~ir-~l~~~~~~------------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~ 155 (527)
T PRK14969 95 AASNTQVDAMR-ELLDNAQY------------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILA 155 (527)
T ss_pred ccccCCHHHHH-HHHHHHhh------------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEE
Confidence 22111111111 11111100 00135667999999976522 22 222333446666665
Q ss_pred cCCc-ccccc-CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChH-HHHHH
Q 003513 206 TRFV-DVCGG-MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPL-ALITI 271 (814)
Q Consensus 206 tR~~-~~~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 271 (814)
|.+. .+... ......+++++++.++..+.+.+.+....... .++....|++.++|.+. |+..+
T Consensus 156 t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~---~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 156 TTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF---DATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred eCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 5433 33211 12346899999999999998888765433222 25667889999999875 44444
No 95
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.46 E-value=1.8e-06 Score=86.50 Aligned_cols=166 Identities=14% Similarity=0.135 Sum_probs=97.9
Q ss_pred cchhHHH-HHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCC
Q 003513 73 VGLQSQL-EQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLC 151 (814)
Q Consensus 73 vGr~~~~-~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 151 (814)
.|..... ..+.++.......+.+.|+|..|+|||+||+.+++...+ .. ..+.+++..... ..+
T Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~--~~-~~~~~i~~~~~~------~~~------- 85 (227)
T PRK08903 22 AGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASY--GG-RNARYLDAASPL------LAF------- 85 (227)
T ss_pred cCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHh--CC-CcEEEEehHHhH------HHH-------
Confidence 3554444 444444342234578899999999999999999998621 22 234555543211 000
Q ss_pred CCCCCCCCHHHHHHHHHHHhccCceEEEEccccCccc--cccccccC----CCCc-EEEEecCCccccc--------cCC
Q 003513 152 NDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWERVD--LKKIGVPL----PKNS-AVVFTTRFVDVCG--------GME 216 (814)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~~----~~~~-~iiiTtR~~~~~~--------~~~ 216 (814)
.. ....-++|+||++.... ...+...+ ..+. .+|+|++...... .+.
T Consensus 86 -----------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~ 147 (227)
T PRK08903 86 -----------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLG 147 (227)
T ss_pred -----------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHh
Confidence 01 12334788999965421 11121111 1233 4666666433211 222
Q ss_pred ccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHHHHh
Q 003513 217 ARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIGRAM 275 (814)
Q Consensus 217 ~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 275 (814)
....++++++++++-..++.+.+.......+ ++....+++...|++..+..+...+
T Consensus 148 ~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 148 WGLVYELKPLSDADKIAALKAAAAERGLQLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred cCeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2468999999999888888775543332333 6788889999999999887777655
No 96
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.44 E-value=4.8e-08 Score=97.25 Aligned_cols=215 Identities=19% Similarity=0.130 Sum_probs=97.6
Q ss_pred CCCcccEEEcccCCCccc----cchhhccCCcccEEEccCC---ccccccCcc-------cccccccCEEEecCCCCc--
Q 003513 447 TCPHLLTLFLNRNPLRTI----TGGFFQSMSCLTVLKMSDN---IMLRQLPMG-------ISKLVSLQLLDISNTSVT-- 510 (814)
Q Consensus 447 ~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~~---~~~~~lp~~-------i~~l~~L~~L~l~~~~l~-- 510 (814)
.+..++.+++++|.+..- ....+.+.++|+..++++- +...++|+. +-.+++|++|+||.|-+.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 344445555555543211 1122444555666666553 111223322 234456666666666443
Q ss_pred ---ccChhhhcCCCCceeccccccccceeCccc-------------cCCCcccceeeccccCcccchhhhchHHHHcCCC
Q 003513 511 ---ELPEDLKALVNLKCLNLVWAKELVVVPQQL-------------LSNFSRLRVLRMFATGFLLSSWHENVAEELLGLK 574 (814)
Q Consensus 511 ---~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~-------------i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~ 574 (814)
.+-.-+.++..|++|+|.+|.. +...... ++.-+.|+++....|.. .+.........+...+
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl-en~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGL-GPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL-ENGGATALAEAFQSHP 185 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCC-ChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc-ccccHHHHHHHHHhcc
Confidence 2233445666677777766643 1111110 23334566665555544 1222233444555556
Q ss_pred CccEEEEEecChhhHHHHhccccccccceeeeecccCCCCcccccCccCCCCCcEEEeccCCCcceEEecccccccccCC
Q 003513 575 YLEVLEISFRSFEAYQTFLSSQKLRSCTHALLLHRFDREESIDVADLADLEQLNTLDFYGCGCIKGLKIDCNDMVQKSRQ 654 (814)
Q Consensus 575 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 654 (814)
.|+.+.+..|.+..-. .+ .-...+..+++|+.|||..|..... .+......
T Consensus 186 ~leevr~~qN~I~~eG----------------------~~-al~eal~~~~~LevLdl~DNtft~e------gs~~Laka 236 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEG----------------------VT-ALAEALEHCPHLEVLDLRDNTFTLE------GSVALAKA 236 (382)
T ss_pred ccceEEEecccccCch----------------------hH-HHHHHHHhCCcceeeecccchhhhH------HHHHHHHH
Confidence 6666666655432100 00 0013345566666666666542210 00000112
Q ss_pred ccccCCccEEeeecCcccccccc-------cccCCCCcEEEEecCh
Q 003513 655 PYVFRSLEKVTVRFCRNLRHLTF-------LVFAPNLKSISVRYCD 693 (814)
Q Consensus 655 ~~~~~~L~~L~L~~c~~l~~l~~-------l~~l~~L~~L~l~~c~ 693 (814)
...+++|+.|++++|. +++=.. -...|+|+.|.+.+|.
T Consensus 237 L~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred hcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcch
Confidence 2345567777777763 332110 1236777777777743
No 97
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=4.1e-06 Score=92.96 Aligned_cols=178 Identities=16% Similarity=0.136 Sum_probs=108.1
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCC-------------------CCCeEEEEE
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPK-------------------DFDYVIWVV 130 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~-------------------~f~~~~wv~ 130 (814)
.++||-+..++.|.+++..+.-...+.++|+.|+||||+|+.+++... -.. .+.-++.++
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~-c~~~~~~~pCg~C~~C~~i~~g~~~d~~eid 94 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN-CEKGVSANPCNDCENCREIDEGRFPDLFEVD 94 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc-CCCCCCcccCCCCHHHHHHhcCCCceEEEEc
Confidence 468999999999999998773345678999999999999999998762 111 111233333
Q ss_pred ECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCc--cccc---cccccCCCCcEEEEe
Q 003513 131 VSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWER--VDLK---KIGVPLPKNSAVVFT 205 (814)
Q Consensus 131 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~---~~~~~~~~~~~iiiT 205 (814)
.+....++++. .+++.+... -..++.-++|||+++.. .... +.....+..+++|++
T Consensus 95 aas~~~v~~iR-~l~~~~~~~------------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIla 155 (509)
T PRK14958 95 AASRTKVEDTR-ELLDNIPYA------------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILA 155 (509)
T ss_pred ccccCCHHHHH-HHHHHHhhc------------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 32222222221 122211100 11356668999999864 2222 222333456777766
Q ss_pred cCCc-ccccc-CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHH
Q 003513 206 TRFV-DVCGG-MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALIT 270 (814)
Q Consensus 206 tR~~-~~~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 270 (814)
|.+. .+... ......+++++++.++....+...+.......+ .+....|++.++|.+.-+..
T Consensus 156 ttd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~---~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 156 TTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE---NAALDLLARAANGSVRDALS 219 (509)
T ss_pred ECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHH
Confidence 5433 22211 123457899999999988888777654432222 56677899999998865443
No 98
>PF13173 AAA_14: AAA domain
Probab=98.43 E-value=6.5e-07 Score=80.46 Aligned_cols=117 Identities=18% Similarity=0.145 Sum_probs=76.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTL 171 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 171 (814)
.+++.|.|+.|+||||++++++.+. . ....+++++..+....... ..+ ....+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~---~-~~~~~~yi~~~~~~~~~~~------------------~~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL---L-PPENILYINFDDPRDRRLA------------------DPD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh---c-ccccceeeccCCHHHHHHh------------------hhh-hHHHHHHhh
Confidence 4789999999999999999999987 2 4456777766544221100 000 222333333
Q ss_pred ccCceEEEEccccCccccccccccCC---CCcEEEEecCCcccccc------CCccceEEeccCCHHhH
Q 003513 172 SKKKFALLLDDLWERVDLKKIGVPLP---KNSAVVFTTRFVDVCGG------MEARRMFKVACLSDEDA 231 (814)
Q Consensus 172 ~~~~~LlVlDdv~~~~~~~~~~~~~~---~~~~iiiTtR~~~~~~~------~~~~~~~~l~~L~~~ea 231 (814)
..++.+++||++....+|......+- .+.+|++|+.+...... .+....+++.||+-.|.
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 44788999999988877665533322 25799999886655321 12334689999998774
No 99
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.43 E-value=6.1e-06 Score=92.95 Aligned_cols=195 Identities=14% Similarity=0.130 Sum_probs=110.7
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCC-eEEEEEECCccCHHHHHHHHHHHh
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFD-YVIWVVVSKDLQLEKIQETIGKKI 148 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l 148 (814)
.++||.+..++.|.+.+..+.-...+.++|+.|+||||+|+.+++...-....-. ...+- ....-.-.+.|...-
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~i~~g~ 99 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQAIMEGR 99 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHHHhcCC
Confidence 4689999999999999988744557899999999999999999987621100000 00000 001111112222111
Q ss_pred CCCC---CCCCCCCHHHHHHHHHHHh-----ccCceEEEEccccCcc--ccccc---cccCCCCcEEEEec-CCcccccc
Q 003513 149 GLCN---DSWKNKSLEEKAHDIFKTL-----SKKKFALLLDDLWERV--DLKKI---GVPLPKNSAVVFTT-RFVDVCGG 214 (814)
Q Consensus 149 ~~~~---~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~~~~~---~~~~~~~~~iiiTt-R~~~~~~~ 214 (814)
.... +.......++.. .+.+.+ .+++-++|+|+++... ....+ ....+.++.+|++| ....+...
T Consensus 100 h~Dv~e~~a~s~~gvd~IR-eIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~t 178 (598)
T PRK09111 100 HVDVLEMDAASHTGVDDIR-EIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVT 178 (598)
T ss_pred CCceEEecccccCCHHHHH-HHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHH
Confidence 0000 000111122211 122222 2456689999997552 22222 23334466666554 43333221
Q ss_pred -CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHH
Q 003513 215 -MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIG 272 (814)
Q Consensus 215 -~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 272 (814)
......+++..++.++....+.+.+.......+ ++....|++.++|.+.-+....
T Consensus 179 I~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~---~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 179 VLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE---DEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 123468999999999999999988754432222 5778899999999987654443
No 100
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=9.8e-06 Score=86.74 Aligned_cols=171 Identities=15% Similarity=0.110 Sum_probs=103.7
Q ss_pred CcccchhHHHHHHHHHHhcCC---------CceEEEEEcCCCCcHHHHHHHHHhhhccCC------------------CC
Q 003513 70 PTVVGLQSQLEQVWRCLVQEP---------AAGIIGLYGMGGVGKTTLLTQINNKFVDNP------------------KD 122 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~---------~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~------------------~~ 122 (814)
..++|.+..++.|.+.+..+. -.+.+.++|+.|+|||++|+.++....-.. .|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 358999999999999997752 346688999999999999999988652110 01
Q ss_pred CCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-----ccCceEEEEccccCcc--c---cccc
Q 003513 123 FDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTL-----SKKKFALLLDDLWERV--D---LKKI 192 (814)
Q Consensus 123 f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~---~~~~ 192 (814)
.+ +.++.... .....++ +..+.+.. .+++-++|+|+++... . +-+.
T Consensus 85 pD-~~~i~~~~----------------------~~i~i~~-iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~ 140 (394)
T PRK07940 85 PD-VRVVAPEG----------------------LSIGVDE-VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKA 140 (394)
T ss_pred CC-EEEecccc----------------------ccCCHHH-HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHH
Confidence 11 11221100 0111222 12222222 2455688889997541 1 2222
Q ss_pred cccCCCCcEEEEecCCc-ccccc-CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHH
Q 003513 193 GVPLPKNSAVVFTTRFV-DVCGG-MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALIT 270 (814)
Q Consensus 193 ~~~~~~~~~iiiTtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 270 (814)
....+++..+|++|.+. .+... ......+.+.+++.++..+.+.+..+. + ++.+..+++.++|.|.....
T Consensus 141 LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~-----~---~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 141 VEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV-----D---PETARRAARASQGHIGRARR 212 (394)
T ss_pred hhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC-----C---HHHHHHHHHHcCCCHHHHHH
Confidence 23334466666666553 33221 123468999999999999988754321 1 45678899999999976544
Q ss_pred HH
Q 003513 271 IG 272 (814)
Q Consensus 271 ~~ 272 (814)
+.
T Consensus 213 l~ 214 (394)
T PRK07940 213 LA 214 (394)
T ss_pred Hh
Confidence 43
No 101
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.39 E-value=4.8e-07 Score=90.30 Aligned_cols=92 Identities=15% Similarity=0.118 Sum_probs=62.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCc--cCHHHHHHHHHHHhCCCCCCCCCCCHH------H
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKD--LQLEKIQETIGKKIGLCNDSWKNKSLE------E 162 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~------~ 162 (814)
.-..++|+|++|+|||||++.+++.. . ..+|+.++|+.+... .++.++++.+...+-...- +..... .
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l-~-~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~--~~~~~~~~~~~~~ 90 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAI-T-KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF--DEPPERHVQVAEM 90 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-c-cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC--CCCHHHHHHHHHH
Confidence 44788999999999999999999998 3 238999999997776 7899999999333221110 111111 1
Q ss_pred HHHHHHHH-hccCceEEEEccccCc
Q 003513 163 KAHDIFKT-LSKKKFALLLDDLWER 186 (814)
Q Consensus 163 ~~~~l~~~-l~~~~~LlVlDdv~~~ 186 (814)
........ -.++++++++|++...
T Consensus 91 ~~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 91 VLEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHHCCCCEEEEEECHHHh
Confidence 11222222 2478999999998654
No 102
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.39 E-value=9.1e-06 Score=78.71 Aligned_cols=157 Identities=17% Similarity=0.175 Sum_probs=90.2
Q ss_pred HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCC-------------------CCCCeEEEEEEC-CccCHHHH
Q 003513 81 QVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP-------------------KDFDYVIWVVVS-KDLQLEKI 140 (814)
Q Consensus 81 ~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~-------------------~~f~~~~wv~~~-~~~~~~~~ 140 (814)
.+.+.+..+.-...+.++|+.|+||||+|+.++....... .+.+ ..++... .....+++
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d-~~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPD-LHRLEPEGQSIKVDQV 81 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCc-EEEeccccCcCCHHHH
Confidence 4555555552346799999999999999999998872210 1111 1222111 11111111
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-hccCceEEEEccccCcc--c---cccccccCCCCcEEEEecCCc-cccc
Q 003513 141 QETIGKKIGLCNDSWKNKSLEEKAHDIFKT-LSKKKFALLLDDLWERV--D---LKKIGVPLPKNSAVVFTTRFV-DVCG 213 (814)
Q Consensus 141 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~--~---~~~~~~~~~~~~~iiiTtR~~-~~~~ 213 (814)
. .+.+. +... ..+.+-++|+||++... . +..+....+..+.+|++|++. .+..
T Consensus 82 ~-~i~~~-------------------~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~ 141 (188)
T TIGR00678 82 R-ELVEF-------------------LSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLP 141 (188)
T ss_pred H-HHHHH-------------------HccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChH
Confidence 1 11111 1110 12456789999987542 1 222223333466677666543 2211
Q ss_pred c-CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHH
Q 003513 214 G-MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLA 267 (814)
Q Consensus 214 ~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 267 (814)
. ......+++.+++.+|..+.+.+. + . + ++.+..|++.++|.|..
T Consensus 142 ~i~sr~~~~~~~~~~~~~~~~~l~~~-g-i----~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 142 TIRSRCQVLPFPPLSEEALLQWLIRQ-G-I----S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred HHHhhcEEeeCCCCCHHHHHHHHHHc-C-C----C---HHHHHHHHHHcCCCccc
Confidence 1 123458999999999999999887 2 1 1 56788999999998863
No 103
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.39 E-value=4.2e-08 Score=97.69 Aligned_cols=241 Identities=15% Similarity=0.098 Sum_probs=147.8
Q ss_pred CccCcccEEEEEcccCCCcCC------CCCCCCCcccEEEcccCC----Cccccc------hhhccCCcccEEEccCCcc
Q 003513 422 DVRGWEMVRRLSLMKNSIENL------PTVPTCPHLLTLFLNRNP----LRTITG------GFFQSMSCLTVLKMSDNIM 485 (814)
Q Consensus 422 ~~~~~~~l~~L~l~~~~~~~l------~~~~~l~~L~~L~l~~~~----~~~~~~------~~~~~l~~L~~L~L~~~~~ 485 (814)
....+..+..++|++|.+..= +.+.+.++|+..++++-- ...+|+ ..+..+++|++||||.|-.
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 344567899999999987531 235566788988888753 122222 1255788999999999933
Q ss_pred cccc----CcccccccccCEEEecCCCCccc--------------ChhhhcCCCCceeccccccccceeCcc----ccCC
Q 003513 486 LRQL----PMGISKLVSLQLLDISNTSVTEL--------------PEDLKALVNLKCLNLVWAKELVVVPQQ----LLSN 543 (814)
Q Consensus 486 ~~~l----p~~i~~l~~L~~L~l~~~~l~~l--------------p~~i~~l~~L~~L~l~~~~~l~~~p~~----~i~~ 543 (814)
-... -.-|.++..|++|.|.+|.+... -+.+++-++|+.+....|.. ...+.. .+..
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl-en~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL-ENGGATALAEAFQS 183 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc-ccccHHHHHHHHHh
Confidence 2222 23456789999999999987622 12345677899999888754 554432 2566
Q ss_pred CcccceeeccccCcccchhhhchHHHHcCCCCccEEEEEecChhhHHHHhccccccccceeeeecccCCCCcccccCccC
Q 003513 544 FSRLRVLRMFATGFLLSSWHENVAEELLGLKYLEVLEISFRSFEAYQTFLSSQKLRSCTHALLLHRFDREESIDVADLAD 623 (814)
Q Consensus 544 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~ 623 (814)
.+.|+.+.+..|.+.. .........+.++++|+.|+|..|.++.-....-. ..++.
T Consensus 184 ~~~leevr~~qN~I~~-eG~~al~eal~~~~~LevLdl~DNtft~egs~~La-----------------------kaL~s 239 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRP-EGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA-----------------------KALSS 239 (382)
T ss_pred ccccceEEEecccccC-chhHHHHHHHHhCCcceeeecccchhhhHHHHHHH-----------------------HHhcc
Confidence 7899999999988732 22245677899999999999999987654332111 33555
Q ss_pred CCCCcEEEeccCCCcceEEecccccccccCCccccCCccEEeeecCccccc-c-----cccccCCCCcEEEEecCh
Q 003513 624 LEQLNTLDFYGCGCIKGLKIDCNDMVQKSRQPYVFRSLEKVTVRFCRNLRH-L-----TFLVFAPNLKSISVRYCD 693 (814)
Q Consensus 624 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~-l-----~~l~~l~~L~~L~l~~c~ 693 (814)
+++|+.|++++|. +++-...... -......++|+.|.+.+|. ++. - ..+...|.|+.|+|++|.
T Consensus 240 ~~~L~El~l~dcl-l~~~Ga~a~~----~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 240 WPHLRELNLGDCL-LENEGAIAFV----DALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred cchheeecccccc-cccccHHHHH----HHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 5666666666664 1110000000 0000235667777776653 221 0 112335666677666643
No 104
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=1.3e-05 Score=89.38 Aligned_cols=194 Identities=14% Similarity=0.164 Sum_probs=109.5
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhC
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIG 149 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 149 (814)
.+++|.+..++.|.+.+..+.-...+.++|+.|+||||+|+.+++... ....... .....-...+.|.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~-C~~~~~~-------~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN-CETAPTG-------EPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc-ccCCCCC-------CCCcccHHHHHHhcCCC
Confidence 468999999888888887763357888999999999999999998872 1111000 00000111111111100
Q ss_pred CCC---CCCCCCCHHHHHHHHHHH-----hccCceEEEEccccCc--cccccc---cccCCCCcEEEEecCC-cccccc-
Q 003513 150 LCN---DSWKNKSLEEKAHDIFKT-----LSKKKFALLLDDLWER--VDLKKI---GVPLPKNSAVVFTTRF-VDVCGG- 214 (814)
Q Consensus 150 ~~~---~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~~~~~---~~~~~~~~~iiiTtR~-~~~~~~- 214 (814)
... +.......++ +..+.+. ..+++-++|||+++.. .....+ ....+....+|++|.+ ..+...
T Consensus 88 pDv~eId~a~~~~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI 166 (624)
T PRK14959 88 VDVVEIDGASNRGIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTI 166 (624)
T ss_pred CceEEEecccccCHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHH
Confidence 000 0000011111 1112222 2356679999999765 222222 2222235556555543 333211
Q ss_pred CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCCh-HHHHHHHHHh
Q 003513 215 MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLP-LALITIGRAM 275 (814)
Q Consensus 215 ~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~~~l 275 (814)
......+++++++.+|....+...+.......+ .+.+..|++.++|.+ .|+..+...+
T Consensus 167 ~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id---~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 167 VSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD---PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 123457899999999999999887654432222 677888999999965 5777766544
No 105
>PLN03150 hypothetical protein; Provisional
Probab=98.37 E-value=6.4e-07 Score=102.96 Aligned_cols=89 Identities=27% Similarity=0.354 Sum_probs=44.2
Q ss_pred ccEEEcccCCCccccchhhccCCcccEEEccCCccccccCcccccccccCEEEecCCCCc-ccChhhhcCCCCceecccc
Q 003513 451 LLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGISKLVSLQLLDISNTSVT-ELPEDLKALVNLKCLNLVW 529 (814)
Q Consensus 451 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~ 529 (814)
++.|+|++|.+.+..+..+.++++|++|+|++|.....+|..++.+++|++|+|++|++. .+|..++++++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 444555555544333333455555555555555222345555555555555555555554 4455555555555555555
Q ss_pred ccccceeCcc
Q 003513 530 AKELVVVPQQ 539 (814)
Q Consensus 530 ~~~l~~~p~~ 539 (814)
|.....+|..
T Consensus 500 N~l~g~iP~~ 509 (623)
T PLN03150 500 NSLSGRVPAA 509 (623)
T ss_pred CcccccCChH
Confidence 5444444443
No 106
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=1.1e-05 Score=93.93 Aligned_cols=176 Identities=15% Similarity=0.118 Sum_probs=107.0
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCC---------------------CeEEE
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDF---------------------DYVIW 128 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f---------------------~~~~w 128 (814)
.++||.+..++.|...+..+.-...+.++|+.|+||||+|+.+++.+. -.... .-+++
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~-C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~e 93 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN-CVEGPTSTPCGECDSCVALAPGGPGSLDVTE 93 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhC-cccCCCCCCCcccHHHHHHHcCCCCCCcEEE
Confidence 458999999999999998873345688999999999999999998872 11110 01222
Q ss_pred EEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH-HHhccCceEEEEccccCc--cc---cccccccCCCCcEE
Q 003513 129 VVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIF-KTLSKKKFALLLDDLWER--VD---LKKIGVPLPKNSAV 202 (814)
Q Consensus 129 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~--~~---~~~~~~~~~~~~~i 202 (814)
++......++++. ++...+. .-..++.-++|||+++.. .. +.++....+..+.+
T Consensus 94 idaas~~~Vd~iR--------------------~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~f 153 (824)
T PRK07764 94 IDAASHGGVDDAR--------------------ELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKF 153 (824)
T ss_pred ecccccCCHHHHH--------------------HHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 2221111122111 1111111 112356668999999755 22 33333434456666
Q ss_pred EEecC-Ccccccc-CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHH
Q 003513 203 VFTTR-FVDVCGG-MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALI 269 (814)
Q Consensus 203 iiTtR-~~~~~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 269 (814)
|++|. ...+... ......|++..++.++..+.+.+.+.......+ .+....|++.++|.+..+.
T Consensus 154 Il~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id---~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 154 IFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE---PGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred EEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 66554 3333321 234568999999999999999887644332222 5667889999999885443
No 107
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.36 E-value=5.1e-07 Score=69.03 Aligned_cols=60 Identities=35% Similarity=0.527 Sum_probs=37.8
Q ss_pred CcccEEEcccCCCccccchhhccCCcccEEEccCCccccccC-cccccccccCEEEecCCCC
Q 003513 449 PHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLP-MGISKLVSLQLLDISNTSV 509 (814)
Q Consensus 449 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~~l 509 (814)
++|++|++++|.++.+++..|.++++|++|++++| .++.++ ..+..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 35666666666666666666666666666666666 555543 3456666666666666643
No 108
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=9.1e-06 Score=88.22 Aligned_cols=196 Identities=12% Similarity=0.112 Sum_probs=107.6
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEE-CCccCHHHHHHHHHHHh
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVV-SKDLQLEKIQETIGKKI 148 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l 148 (814)
.+++|.+..++.|.+++..+.-...+.++|+.|+||||+|..+++... -...+....|... ......-...+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~-c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc-CCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 468999999999998888773334588999999999999999998872 1111110001100 00000111111111110
Q ss_pred CCCC---CCCCCCCHHHHHHHHHHHh-----ccCceEEEEccccCcc--ccccc---cccCCCCcEEEEec-CCcccccc
Q 003513 149 GLCN---DSWKNKSLEEKAHDIFKTL-----SKKKFALLLDDLWERV--DLKKI---GVPLPKNSAVVFTT-RFVDVCGG 214 (814)
Q Consensus 149 ~~~~---~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~~~~~---~~~~~~~~~iiiTt-R~~~~~~~ 214 (814)
.... +.......++.. .+.+.+ .+++-++|+|+++... .+..+ ....++.+.+|++| +...+...
T Consensus 95 ~~n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~t 173 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (397)
T ss_pred CCCeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHH
Confidence 0000 000111122222 233333 2456689999987542 22222 22233356665554 43333221
Q ss_pred C-CccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHH
Q 003513 215 M-EARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALIT 270 (814)
Q Consensus 215 ~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 270 (814)
. .....+++.++++++..+.+...+.......+ ++.+..|++.++|.+--+..
T Consensus 174 l~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~---~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 174 IASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD---ADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 1 22457899999999999988887643322222 77889999999998864444
No 109
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.35 E-value=7.9e-06 Score=89.57 Aligned_cols=166 Identities=11% Similarity=0.104 Sum_probs=104.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTL 171 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 171 (814)
..-+.|+|..|+|||+|++++++...+ ...-..+++++ ..++...+...++.. ......+.+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~-~~~~~~v~yv~------~~~f~~~~~~~l~~~---------~~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIES-NFSDLKVSYMS------GDEFARKAVDILQKT---------HKEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEE------HHHHHHHHHHHHHHh---------hhHHHHHHHHh
Confidence 456899999999999999999997622 12223455554 345666666655421 01223344444
Q ss_pred ccCceEEEEccccCcc---c-ccccccc----CCCCcEEEEecCCcc---------ccccCCccceEEeccCCHHhHHHH
Q 003513 172 SKKKFALLLDDLWERV---D-LKKIGVP----LPKNSAVVFTTRFVD---------VCGGMEARRMFKVACLSDEDAWEL 234 (814)
Q Consensus 172 ~~~~~LlVlDdv~~~~---~-~~~~~~~----~~~~~~iiiTtR~~~---------~~~~~~~~~~~~l~~L~~~ea~~l 234 (814)
+ ..-+||+||+.... . .+.+..- ...+..||+|+.... +..++...-++.+++++.++-.++
T Consensus 205 ~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 205 C-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred c-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 4 34478899996542 1 1222111 122667888876432 223334456788999999999999
Q ss_pred HHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHHHHh
Q 003513 235 FREKVGEETIESHHSLPELAQTVAKECRGLPLALITIGRAM 275 (814)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 275 (814)
+.+++...... ..-.+++..-|++.++|.|..+..+...+
T Consensus 284 L~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 284 IKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 99987543211 12237888999999999998887666443
No 110
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=1.9e-05 Score=87.01 Aligned_cols=177 Identities=13% Similarity=0.110 Sum_probs=108.6
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCC-CCC-----------------CeEEEEEE
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP-KDF-----------------DYVIWVVV 131 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~-~~f-----------------~~~~wv~~ 131 (814)
..+||-+..++.+...+..+.-.+++.++|+.|+||||+|+.+++...... ... ..++.++.
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~elda 93 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDA 93 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecc
Confidence 468999999999999998773345668999999999999999988762110 010 01222221
Q ss_pred CCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH----hccCceEEEEccccCcc--cccc---ccccCCCCcEE
Q 003513 132 SKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKT----LSKKKFALLLDDLWERV--DLKK---IGVPLPKNSAV 202 (814)
Q Consensus 132 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~--~~~~---~~~~~~~~~~i 202 (814)
+....+ ++....+... ..+++-++|+|+++... .... .....+..+.+
T Consensus 94 as~~gI-----------------------d~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~F 150 (535)
T PRK08451 94 ASNRGI-----------------------DDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKF 150 (535)
T ss_pred ccccCH-----------------------HHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEE
Confidence 111112 2222222110 12456689999997552 2222 22223557777
Q ss_pred EEecCCcc-ccc-cCCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHH
Q 003513 203 VFTTRFVD-VCG-GMEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIG 272 (814)
Q Consensus 203 iiTtR~~~-~~~-~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 272 (814)
|++|.+.. +.. .......+++.+++.++..+.+.+.+...+...+ ++.+..|++.++|.+.-+....
T Consensus 151 IL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~---~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 151 ILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE---PEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred EEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHH
Confidence 77666532 211 1123468999999999999999887754432222 6788899999999986554443
No 111
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.8e-05 Score=89.85 Aligned_cols=177 Identities=15% Similarity=0.186 Sum_probs=108.6
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhcc--------------------CCCCCCeEEEE
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVD--------------------NPKDFDYVIWV 129 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~--------------------~~~~f~~~~wv 129 (814)
..++|.+..++.|...+..+.-.+.+.++|+.|+||||+|+.++....- ...+|+ +..+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-IHEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-eEEe
Confidence 4689999999999999987734456889999999999999999887620 011232 2222
Q ss_pred EECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCcc--c---cccccccCCCCcEEEE
Q 003513 130 VVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWERV--D---LKKIGVPLPKNSAVVF 204 (814)
Q Consensus 130 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~---~~~~~~~~~~~~~iii 204 (814)
+......+.++...+ +++... -..+++-++|+|+++... . +..+....+.++.+|+
T Consensus 96 d~~~~~~vd~Ir~li-~~~~~~------------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 96 DAASNNSVDDIRNLI-EQVRIP------------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred cccccCCHHHHHHHH-HHHhhC------------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 322222222222211 111100 012456688999987552 2 3333333344666655
Q ss_pred -ecCCcccccc-CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHH
Q 003513 205 -TTRFVDVCGG-MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALI 269 (814)
Q Consensus 205 -TtR~~~~~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 269 (814)
|++...+... ......+++.+++.++....+.+.+.......+ .+.+..|++.++|...-+.
T Consensus 157 ~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~---~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 157 ATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE---PEALNVIAQKADGGMRDAL 220 (614)
T ss_pred EeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 4444444322 234568999999999999999887755442222 5678899999999775443
No 112
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=1.5e-05 Score=90.32 Aligned_cols=185 Identities=14% Similarity=0.155 Sum_probs=105.2
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhC
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIG 149 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 149 (814)
..++|.+..++.+..++..+.-.+.+.++|+.|+||||+|+.++....- ....+ .+-.+ ...... .+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC-~~~~~--~~~pC-------~~C~~~---~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNC-SHKTD--LLEPC-------QECIEN---VN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc-cccCC--CCCch-------hHHHHh---hc
Confidence 4589999999999999988744566789999999999999999987621 11000 00000 000000 00
Q ss_pred CCCC-----CCCCCCHHHHHHHHHHHh-----ccCceEEEEccccCc--cccccc---cccCCCCcEEE-EecCCccccc
Q 003513 150 LCND-----SWKNKSLEEKAHDIFKTL-----SKKKFALLLDDLWER--VDLKKI---GVPLPKNSAVV-FTTRFVDVCG 213 (814)
Q Consensus 150 ~~~~-----~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~~---~~~~~~~~~ii-iTtR~~~~~~ 213 (814)
...+ .......++ ++.+.+.+ .+++-++|+|+++.. ..+.++ ..-.+....+| +|++...+..
T Consensus 85 ~~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163 (725)
T ss_pred CCCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence 0000 000011121 22222222 356679999998754 222222 22223355545 4544444432
Q ss_pred c-CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHH
Q 003513 214 G-MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITI 271 (814)
Q Consensus 214 ~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 271 (814)
. ......+++.+++.++..+.+...+.......+ .+.+..|++.++|.+.-+..+
T Consensus 164 TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id---~eAl~~LA~lS~GslR~Alsl 219 (725)
T PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFILEKENISYE---KNALKLIAKLSSGSLRDALSI 219 (725)
T ss_pred HHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 1 223468999999999999999886644332222 566888999999977544333
No 113
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.8e-05 Score=88.72 Aligned_cols=182 Identities=15% Similarity=0.129 Sum_probs=107.6
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCC---------------------CeEEE
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDF---------------------DYVIW 128 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f---------------------~~~~w 128 (814)
.++||.+..++.|..++..+.-...+.++|+.|+||||+|+.++.... -.... .-++.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~-c~~~~~~~pCg~C~~C~~i~~~~~~~~dvie 91 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLN-CAQGPTATPCGVCESCVALAPNGPGSIDVVE 91 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-cccCCCCCcccccHHHHHhhcccCCCceEEE
Confidence 468999999999999998773344578999999999999999998762 11110 01112
Q ss_pred EEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-hccCceEEEEccccCc--cccc---cccccCCCCcEE
Q 003513 129 VVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKT-LSKKKFALLLDDLWER--VDLK---KIGVPLPKNSAV 202 (814)
Q Consensus 129 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~--~~~~---~~~~~~~~~~~i 202 (814)
++.+....++++ .++...+... ..+++-++|+|+++.. .... +...-.+....+
T Consensus 92 idaas~~gvd~i--------------------Rel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~f 151 (584)
T PRK14952 92 LDAASHGGVDDT--------------------RELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIF 151 (584)
T ss_pred eccccccCHHHH--------------------HHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEE
Confidence 221111111111 1111111111 1345669999998754 2222 222333445665
Q ss_pred EEec-CCcccccc-CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChH-HHHHHHHHh
Q 003513 203 VFTT-RFVDVCGG-MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPL-ALITIGRAM 275 (814)
Q Consensus 203 iiTt-R~~~~~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~~l 275 (814)
|++| ....+... ......+++.+++.++..+.+.+.+.......+ .+....|++.++|.+. ++..+-..+
T Consensus 152 IL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~---~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 152 IFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD---DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred EEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6554 43333221 223568999999999999999887654432222 5677889999999875 444444433
No 114
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.32 E-value=1e-05 Score=88.59 Aligned_cols=181 Identities=19% Similarity=0.145 Sum_probs=107.8
Q ss_pred cccchhHHH--HHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHh
Q 003513 71 TVVGLQSQL--EQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKI 148 (814)
Q Consensus 71 ~~vGr~~~~--~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 148 (814)
.++|-.... ....+.....+....+.|+|+.|+|||+||+++++...+ ...-..++|++. .++...+...+
T Consensus 107 Fv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~-~~~~~~v~yi~~------~~f~~~~~~~~ 179 (440)
T PRK14088 107 FVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITS------EKFLNDLVDSM 179 (440)
T ss_pred cccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEEH------HHHHHHHHHHH
Confidence 345754332 233333332323456999999999999999999998722 111135667653 34555555554
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCccc---c-cccccc----CCCCcEEEEecC-Cccc--------
Q 003513 149 GLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWERVD---L-KKIGVP----LPKNSAVVFTTR-FVDV-------- 211 (814)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~---~-~~~~~~----~~~~~~iiiTtR-~~~~-------- 211 (814)
.. ...+ .+.+....+.-+||+||++.... . +.+... ...+..||+||. .+.-
T Consensus 180 ~~-------~~~~----~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL 248 (440)
T PRK14088 180 KE-------GKLN----EFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRL 248 (440)
T ss_pred hc-------ccHH----HHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHH
Confidence 31 1122 23333334556899999974311 1 112111 122667888885 3221
Q ss_pred cccCCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHH
Q 003513 212 CGGMEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIG 272 (814)
Q Consensus 212 ~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 272 (814)
..++....++++++.+.++-.+++.+.+.......+ +++..-|++.+.|.-..+.-+-
T Consensus 249 ~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~---~ev~~~Ia~~~~~~~R~L~g~l 306 (440)
T PRK14088 249 VSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELP---EEVLNFVAENVDDNLRRLRGAI 306 (440)
T ss_pred hhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHhccccCHHHHHHHH
Confidence 223344568899999999999999988764432333 7788899999988766554443
No 115
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.32 E-value=6.2e-06 Score=88.77 Aligned_cols=167 Identities=19% Similarity=0.242 Sum_probs=98.8
Q ss_pred cccchhHHHHHHHHHHhc---C---------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHH
Q 003513 71 TVVGLQSQLEQVWRCLVQ---E---------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLE 138 (814)
Q Consensus 71 ~~vGr~~~~~~l~~~L~~---~---------~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 138 (814)
.+.|+++.+++|.+.+.. . ...+-+.|+|++|+|||++|+++++.. ...| +.+.. .
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~~----~ 190 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG----S 190 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecch----H
Confidence 478999999999887642 1 124568999999999999999999987 3333 22211 1
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-ccCceEEEEccccCcc----------------cccccccc---C--
Q 003513 139 KIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTL-SKKKFALLLDDLWERV----------------DLKKIGVP---L-- 196 (814)
Q Consensus 139 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~----------------~~~~~~~~---~-- 196 (814)
.+.... .+ ........+.+.. ...+.+|+|||++... .+..+... +
T Consensus 191 ~l~~~~---~g---------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 191 ELVRKY---IG---------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred HHHHHh---hh---------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 111111 10 1112222233322 3467899999987531 01111111 1
Q ss_pred CCCcEEEEecCCccc-----cccCCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCCh
Q 003513 197 PKNSAVVFTTRFVDV-----CGGMEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLP 265 (814)
Q Consensus 197 ~~~~~iiiTtR~~~~-----~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 265 (814)
..+..||.||..... .........+.++..+.++..++|..++.......+. ....+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~----~~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV----DLEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC----CHHHHHHHcCCCC
Confidence 126778888875432 2222235679999999999999999887554322211 2456777777654
No 116
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=2.5e-05 Score=86.21 Aligned_cols=176 Identities=14% Similarity=0.147 Sum_probs=105.1
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCC------------------CCCeEEEEEE
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPK------------------DFDYVIWVVV 131 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~------------------~f~~~~wv~~ 131 (814)
..++|.+..++.+..++..+.-.+.+.++|+.|+||||+|+.++........ .+..+++++.
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida 95 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA 95 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence 4689999999999999987634456678999999999999999887621000 0111222222
Q ss_pred CCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-----ccCceEEEEccccCcc--ccccc---cccCCCCcE
Q 003513 132 SKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTL-----SKKKFALLLDDLWERV--DLKKI---GVPLPKNSA 201 (814)
Q Consensus 132 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~~~~~---~~~~~~~~~ 201 (814)
+.... .++ +..+.+.. .+++-++|+|+++... ....+ ....+....
T Consensus 96 as~~g-----------------------vd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 96 ASNRG-----------------------IDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred ccCCC-----------------------HHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 11111 111 11222222 3566799999987542 22222 222233445
Q ss_pred EEE-ecCCcccccc-CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHH
Q 003513 202 VVF-TTRFVDVCGG-MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIG 272 (814)
Q Consensus 202 iii-TtR~~~~~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 272 (814)
+|+ ||+...+... ......+.+.+++.++....+.+.+.......+ .+.+..|++.++|.+..+....
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id---~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE---EKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 554 4443333211 123457899999999999999887654332222 5777889999999876554444
No 117
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.28 E-value=1.8e-05 Score=86.57 Aligned_cols=158 Identities=20% Similarity=0.196 Sum_probs=97.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTL 171 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 171 (814)
...+.|+|+.|+|||+|++++++...+ ...-..+++++. .++...+...+... .. ..+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~-~~~~~~v~yi~~------~~~~~~~~~~~~~~-------~~----~~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILE-NNPNAKVVYVSS------EKFTNDFVNALRNN-------KM----EEFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH-hCCCCcEEEEEH------HHHHHHHHHHHHcC-------CH----HHHHHHH
Confidence 457899999999999999999998732 111234566643 33444454444311 12 2233333
Q ss_pred ccCceEEEEccccCcccc----ccccc---c-CCCCcEEEEecCCcc---------ccccCCccceEEeccCCHHhHHHH
Q 003513 172 SKKKFALLLDDLWERVDL----KKIGV---P-LPKNSAVVFTTRFVD---------VCGGMEARRMFKVACLSDEDAWEL 234 (814)
Q Consensus 172 ~~~~~LlVlDdv~~~~~~----~~~~~---~-~~~~~~iiiTtR~~~---------~~~~~~~~~~~~l~~L~~~ea~~l 234 (814)
++ .-+|||||++....- +.+.. . ...+..+|+|+.... +..++.....+.+++.+.++-.++
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 33 348889999753211 11111 1 123667888876321 223334445799999999999999
Q ss_pred HHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHH
Q 003513 235 FREKVGEETIESHHSLPELAQTVAKECRGLPLALITI 271 (814)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 271 (814)
+.+++.......+ +++...|++.+.|..-.+..+
T Consensus 277 l~~~~~~~~~~l~---~e~l~~ia~~~~~~~r~l~~~ 310 (405)
T TIGR00362 277 LQKKAEEEGLELP---DEVLEFIAKNIRSNVRELEGA 310 (405)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHH
Confidence 9998865443333 678888899988887755443
No 118
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=3.8e-05 Score=83.06 Aligned_cols=177 Identities=15% Similarity=0.196 Sum_probs=104.1
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccC-----CCCCCe-EEEEEECCccCHHHHHHH
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDN-----PKDFDY-VIWVVVSKDLQLEKIQET 143 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~-----~~~f~~-~~wv~~~~~~~~~~~~~~ 143 (814)
.+++|.+..++.+.+.+..+.-.+.+.++|+.|+||||+|+.+++..... ...|.. ++-+......++.++. .
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~-~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIR-N 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHH-H
Confidence 45899999999999999876445688999999999999999998876210 011211 1111111111111211 1
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCcc--ccccc---cccCCCCcEEEEec-CCcccccc-CC
Q 003513 144 IGKKIGLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWERV--DLKKI---GVPLPKNSAVVFTT-RFVDVCGG-ME 216 (814)
Q Consensus 144 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~~---~~~~~~~~~iiiTt-R~~~~~~~-~~ 216 (814)
+.+.+... -..+++-++|+|+++... .+..+ ....+..+.+|++| ....+... ..
T Consensus 96 l~~~~~~~------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~s 157 (367)
T PRK14970 96 LIDQVRIP------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS 157 (367)
T ss_pred HHHHHhhc------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHh
Confidence 11111000 012455689999986542 23333 12223345555554 33333221 12
Q ss_pred ccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHH
Q 003513 217 ARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLAL 268 (814)
Q Consensus 217 ~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 268 (814)
....+++.++++++....+...+.......+ ++.+..+++.++|.+-.+
T Consensus 158 r~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 158 RCQIFDFKRITIKDIKEHLAGIAVKEGIKFE---DDALHIIAQKADGALRDA 206 (367)
T ss_pred cceeEecCCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 3457899999999999999887754432223 678888999999876644
No 119
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=2.3e-05 Score=88.38 Aligned_cols=194 Identities=13% Similarity=0.137 Sum_probs=106.5
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEE-ECCccCHHHHHHHHHHHh
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVV-VSKDLQLEKIQETIGKKI 148 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l 148 (814)
..+||.+..++.|.+.+..+.-...+.++|+.|+||||+|+.+++... -....+.-.|.. .......-...+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~-c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC-CCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 468999999999999888763345688999999999999999998872 111111001111 000011111111111110
Q ss_pred CCCC---CCCCCCCHHHHHHHHHHHh-----ccCceEEEEccccCcc--c---cccccccCCCCcEEEEec-CCcccccc
Q 003513 149 GLCN---DSWKNKSLEEKAHDIFKTL-----SKKKFALLLDDLWERV--D---LKKIGVPLPKNSAVVFTT-RFVDVCGG 214 (814)
Q Consensus 149 ~~~~---~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~---~~~~~~~~~~~~~iiiTt-R~~~~~~~ 214 (814)
.... +.......++... +.+.+ .+++-++|+|+++... . +.++....+..+.+|++| +...+...
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~-l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQ-LRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (620)
T ss_pred CCCeEEecccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 0000 0001111222222 22222 3456689999987652 2 222223233355555444 43333221
Q ss_pred -CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHH
Q 003513 215 -MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLAL 268 (814)
Q Consensus 215 -~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 268 (814)
......+++.+++.++....+.+.+.......+ .+.+..|++.++|..--+
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~---~eal~~La~~s~Gdlr~a 225 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID---ADALQLIARKAQGSMRDA 225 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHH
Confidence 234568999999999999888877653322222 678889999999966533
No 120
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=3.4e-05 Score=87.99 Aligned_cols=193 Identities=14% Similarity=0.160 Sum_probs=110.0
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhC
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIG 149 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 149 (814)
.++||.+..++.|..++..+.-...+.++|+.|+||||+|+.+++... ....... ....+.....+.|.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~-c~~~~~~------~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN-CTTNDPK------GRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc-CCCCCCC------CCCCccCHHHHHHhcCCC
Confidence 468999999999998888763345678999999999999999998861 1110000 001111222333322211
Q ss_pred CCC---CCCCCCCHHHHHHHHHHHh-----ccCceEEEEccccCc--ccccccc---ccCCCCcEEEEecCCc-ccccc-
Q 003513 150 LCN---DSWKNKSLEEKAHDIFKTL-----SKKKFALLLDDLWER--VDLKKIG---VPLPKNSAVVFTTRFV-DVCGG- 214 (814)
Q Consensus 150 ~~~---~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~~~---~~~~~~~~iiiTtR~~-~~~~~- 214 (814)
... +.......++. ..+.+.+ .+++-++|||+++.. .....+. ...+..+.+|+++.+. .+...
T Consensus 89 ~d~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 89 VDVIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CeEEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 100 00001112221 1222222 245678999998754 2233332 2223356666655432 22211
Q ss_pred CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHHH
Q 003513 215 MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIGR 273 (814)
Q Consensus 215 ~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 273 (814)
......+++..++.++....+...+.......+ .+.+..|++.++|.+..+...-.
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~---~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE---PGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 123457889999999999999887755432222 67788999999999876554443
No 121
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=3.7e-05 Score=84.36 Aligned_cols=175 Identities=16% Similarity=0.186 Sum_probs=104.1
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCC--------------------CCCeEEEE
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPK--------------------DFDYVIWV 129 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~--------------------~f~~~~wv 129 (814)
.+++|.+..++.+.+.+..+.-...+.++|+.|+||||+|+.+++....... +++ ++++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~i 95 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLEI 95 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEEe
Confidence 4689999999999999987633467889999999999999999987621100 111 1111
Q ss_pred EECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhccCceEEEEccccCcc--c---cccccccCCCCcEEE
Q 003513 130 VVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFK-TLSKKKFALLLDDLWERV--D---LKKIGVPLPKNSAVV 203 (814)
Q Consensus 130 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~--~---~~~~~~~~~~~~~ii 203 (814)
.......++++. +....+.. -..+++-++|+|+++... . +..+....+.+..+|
T Consensus 96 ~g~~~~gid~ir--------------------~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~I 155 (451)
T PRK06305 96 DGASHRGIEDIR--------------------QINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFF 155 (451)
T ss_pred eccccCCHHHHH--------------------HHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEE
Confidence 111111111111 11111110 113567789999986542 2 222222223466666
Q ss_pred EecC-Ccccccc-CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHH
Q 003513 204 FTTR-FVDVCGG-MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLAL 268 (814)
Q Consensus 204 iTtR-~~~~~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 268 (814)
++|. ...+... ......+++.++++++....+...+.......+ ++.+..|++.++|.+.-+
T Consensus 156 l~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~---~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 156 LATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETS---REALLPIARAAQGSLRDA 219 (451)
T ss_pred EEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 6553 3233221 123467999999999999988887654332222 677889999999976533
No 122
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.24 E-value=1.4e-05 Score=91.29 Aligned_cols=200 Identities=16% Similarity=0.091 Sum_probs=111.2
Q ss_pred CCcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCC---CeEEEEEECC---ccCHHHHHH
Q 003513 69 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDF---DYVIWVVVSK---DLQLEKIQE 142 (814)
Q Consensus 69 ~~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f---~~~~wv~~~~---~~~~~~~~~ 142 (814)
-+.++|++..+..+.+.+... ....+.|+|++|+||||+|+.+++.. .....+ ...-|+.+.. ..+...+..
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~~-~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVASP-FPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred HHhceeCcHHHHHHHHHHhcC-CCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 356899999999988877644 55689999999999999999998765 222222 1223443321 112222211
Q ss_pred HH---------------HHHhCCCC----------------CCCCCCCHHHHHHHHHHHhccCceEEEEccccCc--ccc
Q 003513 143 TI---------------GKKIGLCN----------------DSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWER--VDL 189 (814)
Q Consensus 143 ~i---------------~~~l~~~~----------------~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~ 189 (814)
.+ +...+... ++...- ....+..+.+.++++++.++-|+.|.. ..|
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~ 309 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVP 309 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCcccc
Confidence 11 11112110 010111 123456777778888888887666543 223
Q ss_pred ccccccCCC---CcEEEE--ecCCccccc-cC-CccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcC
Q 003513 190 KKIGVPLPK---NSAVVF--TTRFVDVCG-GM-EARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECR 262 (814)
Q Consensus 190 ~~~~~~~~~---~~~iii--TtR~~~~~~-~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 262 (814)
..+...+.. ...|++ ||++..... .+ .....+.+.+++.+|.++++.+.+.......+ +++...|.+++.
T Consensus 310 ~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls---~eal~~L~~ys~ 386 (615)
T TIGR02903 310 KYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLA---AGVEELIARYTI 386 (615)
T ss_pred hhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHCCC
Confidence 333222222 233444 566443211 11 12346789999999999999998754321111 455566666665
Q ss_pred CChHHHHHHHHH
Q 003513 263 GLPLALITIGRA 274 (814)
Q Consensus 263 g~Plal~~~~~~ 274 (814)
.-+.++..++..
T Consensus 387 ~gRraln~L~~~ 398 (615)
T TIGR02903 387 EGRKAVNILADV 398 (615)
T ss_pred cHHHHHHHHHHH
Confidence 456666655544
No 123
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.23 E-value=3.7e-06 Score=87.32 Aligned_cols=92 Identities=14% Similarity=0.160 Sum_probs=62.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCcc--CHHHHHHHHHHHhCCCCCCCCCCCHHH------
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDL--QLEKIQETIGKKIGLCNDSWKNKSLEE------ 162 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~------ 162 (814)
.-+...|+|++|+||||||+++++... ..+|+.++|+.+.+.. ++.++++.+...+-... .+......
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~--~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st--~d~~~~~~~~~a~~ 243 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSIT--TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST--FDEPAERHVQVAEM 243 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHH--hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC--CCCCHHHHHHHHHH
Confidence 345678999999999999999999983 2389999999998887 78888888863221111 11111111
Q ss_pred HHHHHHHH-hccCceEEEEccccCc
Q 003513 163 KAHDIFKT-LSKKKFALLLDDLWER 186 (814)
Q Consensus 163 ~~~~l~~~-l~~~~~LlVlDdv~~~ 186 (814)
........ -.+++++|++|++...
T Consensus 244 ~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 244 VIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHcCCCEEEEEEChHHH
Confidence 11111111 2579999999998654
No 124
>PLN03150 hypothetical protein; Provisional
Probab=98.19 E-value=2.3e-06 Score=98.40 Aligned_cols=106 Identities=22% Similarity=0.343 Sum_probs=79.5
Q ss_pred cccEEEccCCccccccCcccccccccCEEEecCCCCc-ccChhhhcCCCCceeccccccccceeCccccCCCcccceeec
Q 003513 474 CLTVLKMSDNIMLRQLPMGISKLVSLQLLDISNTSVT-ELPEDLKALVNLKCLNLVWAKELVVVPQQLLSNFSRLRVLRM 552 (814)
Q Consensus 474 ~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l 552 (814)
.++.|+|++|.....+|..++.+++|+.|+|++|.+. .+|..++.+++|+.|++++|.....+|.. ++++++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 4777888888555577888888888888888888887 77888888888888888888776677765 788888888888
Q ss_pred cccCcccchhhhchHHHHcCC-CCccEEEEEecC
Q 003513 553 FATGFLLSSWHENVAEELLGL-KYLEVLEISFRS 585 (814)
Q Consensus 553 ~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~ 585 (814)
++|.+ .+.+|..+..+ .++..+++.+|.
T Consensus 498 s~N~l-----~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSL-----SGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcc-----cccCChHHhhccccCceEEecCCc
Confidence 88876 55666666543 345556655543
No 125
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=6e-05 Score=85.69 Aligned_cols=194 Identities=15% Similarity=0.123 Sum_probs=108.5
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhC
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIG 149 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 149 (814)
..++|.+..++.|..++..+.-.+.+.++|+.|+||||+|+.++.... . ...+... ......-...+.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~-c-~~~~~~~----~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN-C-LNSDKPT----PEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc-C-CCcCCCC----CCCCcccHHHHHHhcCCC
Confidence 458999999999999998773446788999999999999999999872 1 1111000 001111222223322211
Q ss_pred CCC---CCCCCCCHHHHHHHHHHHh-----ccCceEEEEccccCc--cccccc---cccCCCCcEEEEecCCc-ccccc-
Q 003513 150 LCN---DSWKNKSLEEKAHDIFKTL-----SKKKFALLLDDLWER--VDLKKI---GVPLPKNSAVVFTTRFV-DVCGG- 214 (814)
Q Consensus 150 ~~~---~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~~---~~~~~~~~~iiiTtR~~-~~~~~- 214 (814)
... +.......++.. .+.+.+ .+++-++|||+++.. .....+ ....+....+|++|.+. .+...
T Consensus 90 ~D~~ei~~~~~~~vd~IR-eii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIR-ELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred ccEEEEeccccCCHHHHH-HHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 100 000111122221 121221 245668999999754 222233 22222355555544433 23221
Q ss_pred CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHHH
Q 003513 215 MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIGR 273 (814)
Q Consensus 215 ~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 273 (814)
......+++..++.++....+...+.......+ .+.+..|++.++|.+..+.....
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is---~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE---PEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 123467888999999988888877654332222 56788999999998865544433
No 126
>PRK06620 hypothetical protein; Validated
Probab=98.17 E-value=1.9e-05 Score=77.48 Aligned_cols=135 Identities=15% Similarity=0.062 Sum_probs=82.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 003513 93 GIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLS 172 (814)
Q Consensus 93 ~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 172 (814)
+.+.|+|++|+|||+|++.+++.. .. .++. ..+. . + +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~--~~~~----------------------~-~-------~~~- 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIK--DIFF----------------------N-E-------EIL- 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcc--hhhh----------------------c-h-------hHH-
Confidence 679999999999999999987765 21 2221 0000 0 0 011
Q ss_pred cCceEEEEccccCccc--cccccccC-CCCcEEEEecCCcccc-------ccCCccceEEeccCCHHhHHHHHHHHhccc
Q 003513 173 KKKFALLLDDLWERVD--LKKIGVPL-PKNSAVVFTTRFVDVC-------GGMEARRMFKVACLSDEDAWELFREKVGEE 242 (814)
Q Consensus 173 ~~~~LlVlDdv~~~~~--~~~~~~~~-~~~~~iiiTtR~~~~~-------~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~ 242 (814)
+..-++++||++...+ +-.+...+ ..|..||+|++..... .++...-+++++++++++-.+++.+.+...
T Consensus 84 ~~~d~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 84 EKYNAFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred hcCCEEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 1234788899974422 11111111 3377899998854431 223334589999999999888888876543
Q ss_pred cccCCCChHHHHHHHHHHcCCChHHHHHH
Q 003513 243 TIESHHSLPELAQTVAKECRGLPLALITI 271 (814)
Q Consensus 243 ~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 271 (814)
....+ +++..-|++.+.|---.+.-+
T Consensus 164 ~l~l~---~ev~~~L~~~~~~d~r~l~~~ 189 (214)
T PRK06620 164 SVTIS---RQIIDFLLVNLPREYSKIIEI 189 (214)
T ss_pred CCCCC---HHHHHHHHHHccCCHHHHHHH
Confidence 32333 677777887777655544433
No 127
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.16 E-value=3.3e-05 Score=85.61 Aligned_cols=158 Identities=19% Similarity=0.187 Sum_probs=97.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTL 171 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 171 (814)
...+.|+|+.|+|||+||+++++...+ ...-..+++++. ..+...+...+.. ... ..+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~-~~~~~~v~yi~~------~~~~~~~~~~~~~-------~~~----~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILE-KNPNAKVVYVTS------EKFTNDFVNALRN-------NTM----EEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEEEH------HHHHHHHHHHHHc-------CcH----HHHHHHH
Confidence 467899999999999999999999822 111234566643 2333444444321 111 2233334
Q ss_pred ccCceEEEEccccCccc----cccccc---c-CCCCcEEEEecCCcc---------ccccCCccceEEeccCCHHhHHHH
Q 003513 172 SKKKFALLLDDLWERVD----LKKIGV---P-LPKNSAVVFTTRFVD---------VCGGMEARRMFKVACLSDEDAWEL 234 (814)
Q Consensus 172 ~~~~~LlVlDdv~~~~~----~~~~~~---~-~~~~~~iiiTtR~~~---------~~~~~~~~~~~~l~~L~~~ea~~l 234 (814)
+ +.-+|||||++.... .+.+.. . ...+..||+||.... +..++....++++++.+.++-.++
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 4 344899999964311 111211 1 122566888876432 123444456899999999999999
Q ss_pred HHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHH
Q 003513 235 FREKVGEETIESHHSLPELAQTVAKECRGLPLALITI 271 (814)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 271 (814)
+.+++.......+ +++..-|++.++|....+..+
T Consensus 289 l~~~~~~~~~~l~---~e~l~~ia~~~~~~~R~l~~~ 322 (450)
T PRK00149 289 LKKKAEEEGIDLP---DEVLEFIAKNITSNVRELEGA 322 (450)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHcCcCCCHHHHHHH
Confidence 9998864332333 778889999999887755433
No 128
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.16 E-value=6.1e-05 Score=75.73 Aligned_cols=189 Identities=15% Similarity=0.139 Sum_probs=116.4
Q ss_pred HHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCC---CCeEEEEEECCccCHHHHHHHHHHHhCCC
Q 003513 77 SQLEQVWRCLVQE--PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKD---FDYVIWVVVSKDLQLEKIQETIGKKIGLC 151 (814)
Q Consensus 77 ~~~~~l~~~L~~~--~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 151 (814)
+.++++.++|... ..++.+.|+|.+|+|||++++.+...+....+. --.|+.|.....++...+...|+.+++.+
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 3455566656543 357789999999999999999999887321111 11577888888999999999999999987
Q ss_pred CCCCCCCCHHHHHHHHHHHhcc-CceEEEEccccCcc-----c---cccccccCCC---CcEEEEecCCc--------cc
Q 003513 152 NDSWKNKSLEEKAHDIFKTLSK-KKFALLLDDLWERV-----D---LKKIGVPLPK---NSAVVFTTRFV--------DV 211 (814)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~~-----~---~~~~~~~~~~---~~~iiiTtR~~--------~~ 211 (814)
.. ...............++. +--+||||++.+.- + .-.....+++ =+-|.|-|+.. +.
T Consensus 124 ~~--~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QL 201 (302)
T PF05621_consen 124 YR--PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQL 201 (302)
T ss_pred cC--CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHH
Confidence 64 233444555555566655 55699999997641 1 1111112222 23455555522 22
Q ss_pred cccCCccceEEeccCCH-HhHHHHHHHHhcccc--ccCCCChHHHHHHHHHHcCCChHHHHH
Q 003513 212 CGGMEARRMFKVACLSD-EDAWELFREKVGEET--IESHHSLPELAQTVAKECRGLPLALIT 270 (814)
Q Consensus 212 ~~~~~~~~~~~l~~L~~-~ea~~l~~~~~~~~~--~~~~~~~~~~~~~i~~~~~g~Plal~~ 270 (814)
+.+ ..++.++.... +|...|+......-. ....-..++.+..|.+.++|+.=-+..
T Consensus 202 a~R---F~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 202 ASR---FEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred Hhc---cCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 222 23556666654 455555544322111 122234478899999999998755443
No 129
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.15 E-value=2.4e-05 Score=82.92 Aligned_cols=142 Identities=14% Similarity=0.175 Sum_probs=86.1
Q ss_pred CCcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHh
Q 003513 69 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKI 148 (814)
Q Consensus 69 ~~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 148 (814)
-.+++|.+...+.+..++..+....++.++|++|+||||+|+.+++.. ... +..++.+. .....+...+..
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~---~~~i~~~~-~~~~~i~~~l~~-- 90 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAE---VLFVNGSD-CRIDFVRNRLTR-- 90 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Ccc---ceEeccCc-ccHHHHHHHHHH--
Confidence 356899999999999998876445677779999999999999999876 222 23444433 112222111111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHH--hccCceEEEEccccCc--c----ccccccccCCCCcEEEEecCCcccc-c-cCCcc
Q 003513 149 GLCNDSWKNKSLEEKAHDIFKT--LSKKKFALLLDDLWER--V----DLKKIGVPLPKNSAVVFTTRFVDVC-G-GMEAR 218 (814)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~l~~~--l~~~~~LlVlDdv~~~--~----~~~~~~~~~~~~~~iiiTtR~~~~~-~-~~~~~ 218 (814)
+... +.+.+-++|+||++.. . .+..+....+.++++|+||...... . .....
T Consensus 91 ------------------~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 91 ------------------FASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred ------------------HHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 1111 1234568999999754 1 1222223334578899888644321 1 01123
Q ss_pred ceEEeccCCHHhHHHHHHH
Q 003513 219 RMFKVACLSDEDAWELFRE 237 (814)
Q Consensus 219 ~~~~l~~L~~~ea~~l~~~ 237 (814)
..+.++..+.++..+++..
T Consensus 153 ~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEeCCCCHHHHHHHHHH
Confidence 4677878888888776654
No 130
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.14 E-value=5.5e-08 Score=105.20 Aligned_cols=158 Identities=22% Similarity=0.286 Sum_probs=92.2
Q ss_pred CCCccCcccEEEEEcccCCCcCCCCCCCC-CcccEEEcccCC--Cccccchh---hc---cCCcccEEEccCCccccccC
Q 003513 420 PADVRGWEMVRRLSLMKNSIENLPTVPTC-PHLLTLFLNRNP--LRTITGGF---FQ---SMSCLTVLKMSDNIMLRQLP 490 (814)
Q Consensus 420 p~~~~~~~~l~~L~l~~~~~~~l~~~~~l-~~L~~L~l~~~~--~~~~~~~~---~~---~l~~L~~L~L~~~~~~~~lp 490 (814)
|-++..+++||+|-+.++++..+-.+..+ .+|+.|.-.+.. +..+...- +. ....|.+.+.++| .+..+-
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN-~L~~mD 180 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYN-RLVLMD 180 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchh-hHHhHH
Confidence 45677789999999999987654332222 123333322221 11110000 11 1335666677777 666666
Q ss_pred cccccccccCEEEecCCCCcccChhhhcCCCCceeccccccccceeCccccCCCcccceeeccccCcccchhhhchHHHH
Q 003513 491 MGISKLVSLQLLDISNTSVTELPEDLKALVNLKCLNLVWAKELVVVPQQLLSNFSRLRVLRMFATGFLLSSWHENVAEEL 570 (814)
Q Consensus 491 ~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l 570 (814)
.++.-++.|+.|+|++|+++..- .+..|++|+||||++|. +..+|.-....+. |+.|.+.+|.+ .....+
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN~l-------~tL~gi 250 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNNAL-------TTLRGI 250 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeecccHH-------HhhhhH
Confidence 66667777777777777777664 56677777777777774 3555542112222 77777776644 344556
Q ss_pred cCCCCccEEEEEecChhh
Q 003513 571 LGLKYLEVLEISFRSFEA 588 (814)
Q Consensus 571 ~~l~~L~~L~l~~~~~~~ 588 (814)
.+|.+|+.|+++.|-+.+
T Consensus 251 e~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred HhhhhhhccchhHhhhhc
Confidence 667777777777665544
No 131
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.14 E-value=2.6e-05 Score=92.15 Aligned_cols=178 Identities=14% Similarity=0.159 Sum_probs=100.9
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCC----CCeEE-EEEECCccCHHHHHHHH
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKD----FDYVI-WVVVSKDLQLEKIQETI 144 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~----f~~~~-wv~~~~~~~~~~~~~~i 144 (814)
..+|||+.++++++..|... ...-+.++|++|+||||+|+.+++++.. ... ....+ .++.+. + +
T Consensus 187 d~~iGr~~ei~~~i~~l~r~-~~~n~lLvG~pGvGKTal~~~La~~i~~-~~v~~~l~~~~i~~l~l~~------l---~ 255 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR-RQNNPILTGEAGVGKTAVVEGLALRIAA-GDVPPALRNVRLLSLDLGL------L---Q 255 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC-CcCceeEECCCCCCHHHHHHHHHHHHhh-CCCCccccCCeEEEeehhh------h---h
Confidence 35899999999999998776 4456679999999999999999998722 111 11222 222211 0 0
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHhc--cCceEEEEccccCcc-------ccc--ccccc-CCCC-cEEEEecCCccc
Q 003513 145 GKKIGLCNDSWKNKSLEEKAHDIFKTLS--KKKFALLLDDLWERV-------DLK--KIGVP-LPKN-SAVVFTTRFVDV 211 (814)
Q Consensus 145 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~-------~~~--~~~~~-~~~~-~~iiiTtR~~~~ 211 (814)
+ + . ....+.++.+..+.+.++ +++.+|++|++.... ..+ .+..| +..| -++|-||...+.
T Consensus 256 a---g-~---~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~ 328 (852)
T TIGR03345 256 A---G-A---SVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEY 328 (852)
T ss_pred c---c-c---ccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHH
Confidence 0 0 0 012233444444444443 468999999986542 111 12223 3334 556655554322
Q ss_pred cc-------cCCccceEEeccCCHHhHHHHHHHHhccccc-cCCCChHHHHHHHHHHcCCCh
Q 003513 212 CG-------GMEARRMFKVACLSDEDAWELFREKVGEETI-ESHHSLPELAQTVAKECRGLP 265 (814)
Q Consensus 212 ~~-------~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P 265 (814)
.. .......+.+++++.+++.+++......... ..-.-..+....+++.+.+..
T Consensus 329 ~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 329 KKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred hhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 10 0112358999999999999998655422110 000112555666777665443
No 132
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.14 E-value=2.8e-05 Score=85.00 Aligned_cols=150 Identities=14% Similarity=0.107 Sum_probs=91.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTL 171 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 171 (814)
..-+.|+|+.|+|||+|++++++... .....+++++ ...+...+...+... . ...+++..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~---~~~~~v~yi~------~~~f~~~~~~~l~~~-------~----~~~f~~~~ 200 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR---ESGGKILYVR------SELFTEHLVSAIRSG-------E----MQRFRQFY 200 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH---HcCCCEEEee------HHHHHHHHHHHHhcc-------h----HHHHHHHc
Confidence 35789999999999999999999872 2223456654 234444555444211 1 12233333
Q ss_pred ccCceEEEEccccCccc----ccccccc----CCCCcEEEEecCCc---------cccccCCccceEEeccCCHHhHHHH
Q 003513 172 SKKKFALLLDDLWERVD----LKKIGVP----LPKNSAVVFTTRFV---------DVCGGMEARRMFKVACLSDEDAWEL 234 (814)
Q Consensus 172 ~~~~~LlVlDdv~~~~~----~~~~~~~----~~~~~~iiiTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~l 234 (814)
+ ..-+|++||+..... .+.+... ...|..||+||... .+..++.....+++.+++.++-.++
T Consensus 201 ~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~i 279 (445)
T PRK12422 201 R-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSF 279 (445)
T ss_pred c-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHH
Confidence 3 344888899865321 1111111 12366788888542 1233344456899999999999999
Q ss_pred HHHHhccccccCCCChHHHHHHHHHHcCCCh
Q 003513 235 FREKVGEETIESHHSLPELAQTVAKECRGLP 265 (814)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 265 (814)
+.+++.......+ +++..-|++.+.|.-
T Consensus 280 L~~k~~~~~~~l~---~evl~~la~~~~~di 307 (445)
T PRK12422 280 LERKAEALSIRIE---ETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhcCCCH
Confidence 9988765432333 566666777777654
No 133
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.14 E-value=5.5e-05 Score=81.75 Aligned_cols=166 Identities=17% Similarity=0.266 Sum_probs=96.8
Q ss_pred cccchhHHHHHHHHHHhc---C---------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHH
Q 003513 71 TVVGLQSQLEQVWRCLVQ---E---------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLE 138 (814)
Q Consensus 71 ~~vGr~~~~~~l~~~L~~---~---------~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 138 (814)
.+.|+++.++++.+.+.. . ...+-|.++|++|+|||++|+++++.. ... |+.++. .
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~-----~i~v~~----~ 199 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NAT-----FIRVVG----S 199 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCC-----EEEeeh----H
Confidence 367999999999887632 0 235678999999999999999999987 322 222221 1
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-ccCceEEEEccccCcc------------c----ccccc---ccCC-
Q 003513 139 KIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTL-SKKKFALLLDDLWERV------------D----LKKIG---VPLP- 197 (814)
Q Consensus 139 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~------------~----~~~~~---~~~~- 197 (814)
.+.... .+ ........+.+.. ...+.+|+|||++... . +..+. ..+.
T Consensus 200 ~l~~~~---~g---------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 200 ELVQKF---IG---------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred HHhHhh---cc---------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 111111 11 1122233333333 3467899999997531 0 11111 1111
Q ss_pred -CCcEEEEecCCccccc-----cCCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCC
Q 003513 198 -KNSAVVFTTRFVDVCG-----GMEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGL 264 (814)
Q Consensus 198 -~~~~iiiTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 264 (814)
.+..||.||....... .......++++..+.++-.++|+.++.......+.+ ...+++.+.|.
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGA 336 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCC
Confidence 2566777776543321 112345799999999999999998876543222222 35566666663
No 134
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=0.0001 Score=83.15 Aligned_cols=188 Identities=17% Similarity=0.135 Sum_probs=105.2
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhC
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIG 149 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 149 (814)
.+++|.+..++.+.+++..+.-.+.+.++|+.|+||||+|+.++.... ....-+. .+.+.-...+.|.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~-c~~~~~~-------~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVN-CLNPPDG-------EPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCCC-------CCCCccHHHHHHhcCCC
Confidence 468999999999999998774456677899999999999999988762 1110000 00000111111111100
Q ss_pred CCC---CCCCCCCHHHHHHHHHHHh-----ccCceEEEEccccCc--cccccc---cccCCCCcEEEEec-CCcccccc-
Q 003513 150 LCN---DSWKNKSLEEKAHDIFKTL-----SKKKFALLLDDLWER--VDLKKI---GVPLPKNSAVVFTT-RFVDVCGG- 214 (814)
Q Consensus 150 ~~~---~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~~---~~~~~~~~~iiiTt-R~~~~~~~- 214 (814)
... +.......++ +..+.+.. .+++-++|+|+++.. .....+ ....+....+|++| ....+...
T Consensus 88 ~dv~eidaas~~~vd~-ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI 166 (559)
T PRK05563 88 MDVIEIDAASNNGVDE-IRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATI 166 (559)
T ss_pred CCeEEeeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHH
Confidence 000 0000111121 12222221 345678899999754 222222 22223355555544 43333221
Q ss_pred CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHH
Q 003513 215 MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALI 269 (814)
Q Consensus 215 ~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 269 (814)
......+++.+++.++..+.+...+...+...+ .+.+..|++.++|.+..+.
T Consensus 167 ~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 167 LSRCQRFDFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 123457889999999999999887754332222 5677889999999876443
No 135
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=7.2e-05 Score=84.01 Aligned_cols=190 Identities=16% Similarity=0.129 Sum_probs=107.3
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhC
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIG 149 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 149 (814)
.+++|-+..++.+..++..+.-.+.+.++|+.|+||||+|+.+++... ....... ..+.. -...+.|...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~-c~~~~~~---~pC~~----C~~C~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLN-CVNGPTP---MPCGE----CSSCKSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc-cccCCCC---CCCcc----chHHHHHHcCCC
Confidence 468999999999999998774455788999999999999999999862 1111000 00000 000011111000
Q ss_pred CC---CCCCCCCCHHHHHHHHHHH-----hccCceEEEEccccCcc--ccccc---cccCCCCcEEEEecCC-cccccc-
Q 003513 150 LC---NDSWKNKSLEEKAHDIFKT-----LSKKKFALLLDDLWERV--DLKKI---GVPLPKNSAVVFTTRF-VDVCGG- 214 (814)
Q Consensus 150 ~~---~~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~~--~~~~~---~~~~~~~~~iiiTtR~-~~~~~~- 214 (814)
.. .+.......++.. .+.+. ..+++-++|+|+++... ....+ ....+....+|++|.. ..+...
T Consensus 88 ~dv~~idgas~~~vddIr-~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI 166 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVR-QIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATI 166 (563)
T ss_pred CCeEEecCcccCCHHHHH-HHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHH
Confidence 00 0000011222221 12111 23566789999987542 22222 2223346666665543 222211
Q ss_pred CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHH
Q 003513 215 MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITI 271 (814)
Q Consensus 215 ~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 271 (814)
......+++.+++.++..+.+.+.+.......+ ++.+..|++.++|.+..+...
T Consensus 167 ~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id---~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 167 KSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE---DEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHhceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 123457899999999999999887754332222 677888999999988655443
No 136
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.11 E-value=2.5e-06 Score=65.17 Aligned_cols=57 Identities=30% Similarity=0.466 Sum_probs=53.0
Q ss_pred ccEEEEEcccCCCcCCC--CCCCCCcccEEEcccCCCccccchhhccCCcccEEEccCC
Q 003513 427 EMVRRLSLMKNSIENLP--TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDN 483 (814)
Q Consensus 427 ~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 483 (814)
++|+.|++++|.+..+| .+..+++|++|++++|.+..+++..|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 36889999999999988 4789999999999999999999999999999999999999
No 137
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.09 E-value=7.4e-05 Score=83.07 Aligned_cols=159 Identities=19% Similarity=0.141 Sum_probs=98.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTL 171 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 171 (814)
...+.|+|..|+|||.|++++++...+ ...-..+++++. .++...+...+.. .. ...+.+.+
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~-~~~g~~V~Yita------eef~~el~~al~~-------~~----~~~f~~~y 375 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARR-LYPGTRVRYVSS------EEFTNEFINSIRD-------GK----GDSFRRRY 375 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeH------HHHHHHHHHHHHh-------cc----HHHHHHHh
Confidence 346899999999999999999998722 112234566643 4444444443321 11 12233333
Q ss_pred ccCceEEEEccccCccc---c-ccc---cccC-CCCcEEEEecCCc---------cccccCCccceEEeccCCHHhHHHH
Q 003513 172 SKKKFALLLDDLWERVD---L-KKI---GVPL-PKNSAVVFTTRFV---------DVCGGMEARRMFKVACLSDEDAWEL 234 (814)
Q Consensus 172 ~~~~~LlVlDdv~~~~~---~-~~~---~~~~-~~~~~iiiTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~l 234 (814)
++ -=+|||||+..... + +.+ ...+ ..+..|||||+.. .+..++...-+++|++.+.+.-.++
T Consensus 376 ~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aI 454 (617)
T PRK14086 376 RE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAI 454 (617)
T ss_pred hc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHH
Confidence 33 34788899964421 1 111 1111 2267788988753 1234445567899999999999999
Q ss_pred HHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHH
Q 003513 235 FREKVGEETIESHHSLPELAQTVAKECRGLPLALITIG 272 (814)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 272 (814)
+.+++.......+ ++++.-|++.+.+..-.|.-+-
T Consensus 455 L~kka~~r~l~l~---~eVi~yLa~r~~rnvR~LegaL 489 (617)
T PRK14086 455 LRKKAVQEQLNAP---PEVLEFIASRISRNIRELEGAL 489 (617)
T ss_pred HHHHHHhcCCCCC---HHHHHHHHHhccCCHHHHHHHH
Confidence 9998865543344 6778888888877665554433
No 138
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.08 E-value=1.5e-05 Score=83.47 Aligned_cols=94 Identities=15% Similarity=0.103 Sum_probs=63.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCc--cCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH--
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKD--LQLEKIQETIGKKIGLCNDSWKNKSLEEKAHD-- 166 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~-- 166 (814)
.-..++|+|++|.|||||++.+++.+. .++|+..+|+.+.+. .++.++++.+...+-...-+............
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~--~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT--RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc--ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 346789999999999999999999983 347999999998866 68999999995443222111011111111111
Q ss_pred --HHHH-hccCceEEEEccccCc
Q 003513 167 --IFKT-LSKKKFALLLDDLWER 186 (814)
Q Consensus 167 --l~~~-l~~~~~LlVlDdv~~~ 186 (814)
.... -++++++|++|++...
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHH
Confidence 1121 2579999999998654
No 139
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.05 E-value=3.6e-05 Score=78.73 Aligned_cols=151 Identities=14% Similarity=0.127 Sum_probs=79.9
Q ss_pred cccchhHHHHHHHHHHhc--------------CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccC
Q 003513 71 TVVGLQSQLEQVWRCLVQ--------------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQ 136 (814)
Q Consensus 71 ~~vGr~~~~~~l~~~L~~--------------~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 136 (814)
.++|.+..+++|.+.... .+....+.++|++|+||||+|+.+++...+.. .-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~-~~~~~~~v~~~~~-- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMN-VLSKGHLIEVERA-- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcC-cccCCceEEecHH--
Confidence 478988877666543210 12456788999999999999999988752211 1111122333221
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCcc----------ccccccccC---CCCcEEE
Q 003513 137 LEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWERV----------DLKKIGVPL---PKNSAVV 203 (814)
Q Consensus 137 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~~~~~~~~---~~~~~ii 203 (814)
++... ..+ .........+ +.. ..-+|++|+++... .+..+.... .....+|
T Consensus 84 --~l~~~---~~g--------~~~~~~~~~~-~~a--~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vi 147 (261)
T TIGR02881 84 --DLVGE---YIG--------HTAQKTREVI-KKA--LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLI 147 (261)
T ss_pred --Hhhhh---hcc--------chHHHHHHHH-Hhc--cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEE
Confidence 11111 000 1111111112 211 23488999997521 222222221 1234555
Q ss_pred EecCCccc----------cccCCccceEEeccCCHHhHHHHHHHHhccc
Q 003513 204 FTTRFVDV----------CGGMEARRMFKVACLSDEDAWELFREKVGEE 242 (814)
Q Consensus 204 iTtR~~~~----------~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~ 242 (814)
+++..... ..+ ....+.+++++.+|-.+++.+.+...
T Consensus 148 la~~~~~~~~~~~~~p~L~sR--f~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 148 LAGYSDEMDYFLSLNPGLRSR--FPISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred ecCCcchhHHHHhcChHHHhc--cceEEEECCCCHHHHHHHHHHHHHHc
Confidence 55543222 122 23468999999999999999887543
No 140
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.04 E-value=0.0001 Score=74.99 Aligned_cols=164 Identities=19% Similarity=0.218 Sum_probs=108.4
Q ss_pred CCcccchhHHHHHHHHHHhcCCC--ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHH
Q 003513 69 EPTVVGLQSQLEQVWRCLVQEPA--AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGK 146 (814)
Q Consensus 69 ~~~~vGr~~~~~~l~~~L~~~~~--~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 146 (814)
.+.|.+|+..++.+...+..... ..+|.|+|-+|.|||.+.+++.+.. .. ..+|+++-..++...+...|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n~---~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---NL---ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---CC---cceeeehHHhccHHHHHHHHHH
Confidence 46789999999999999876532 3456999999999999999999886 22 3589999999999999999999
Q ss_pred HhCCCCCCCCCC-----CHHHHHHHHHHH--hc--cCceEEEEccccCcccccccccc--------CCCCcEEEEecCCc
Q 003513 147 KIGLCNDSWKNK-----SLEEKAHDIFKT--LS--KKKFALLLDDLWERVDLKKIGVP--------LPKNSAVVFTTRFV 209 (814)
Q Consensus 147 ~l~~~~~~~~~~-----~~~~~~~~l~~~--l~--~~~~LlVlDdv~~~~~~~~~~~~--------~~~~~~iiiTtR~~ 209 (814)
+.+....+.... .....+..+.++ .. ++.++||+|+++...+..+...+ .....-+|+++-..
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~ 158 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPS 158 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccc
Confidence 986333211111 111223333332 22 35899999999877665554222 12233344444322
Q ss_pred cc---cccCCccc--eEEeccCCHHhHHHHHHHH
Q 003513 210 DV---CGGMEARR--MFKVACLSDEDAWELFREK 238 (814)
Q Consensus 210 ~~---~~~~~~~~--~~~l~~L~~~ea~~l~~~~ 238 (814)
.. ...++... ++..+.-+.+|..+++.+.
T Consensus 159 ~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 159 CEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 11 22233333 5667888999999988664
No 141
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.03 E-value=3.8e-05 Score=81.91 Aligned_cols=108 Identities=18% Similarity=0.203 Sum_probs=72.2
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhC
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIG 149 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 149 (814)
.++++.+..++.+...|... +.+.++|++|+|||++|+.+++.. .....++.+.|+.+++..+..++...+.-. +
T Consensus 175 ~d~~i~e~~le~l~~~L~~~---~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~ 249 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK---KNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-G 249 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC---CCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhcccCCC-C
Confidence 35788899999999998866 678889999999999999999987 444577889999999887766665322100 0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhc--cCceEEEEccccCc
Q 003513 150 LCNDSWKNKSLEEKAHDIFKTLS--KKKFALLLDDLWER 186 (814)
Q Consensus 150 ~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~ 186 (814)
.. ....+ .-....+.+..+ ++++++|+|++...
T Consensus 250 vg---y~~~~-G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 250 VG---FRRKD-GIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred CC---eEecC-chHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 00 00000 011111222222 46899999998754
No 142
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.03 E-value=7.5e-05 Score=80.79 Aligned_cols=149 Identities=16% Similarity=0.236 Sum_probs=88.1
Q ss_pred cccchhHHHHHHHHHHhc-----------C-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHH
Q 003513 71 TVVGLQSQLEQVWRCLVQ-----------E-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLE 138 (814)
Q Consensus 71 ~~vGr~~~~~~l~~~L~~-----------~-~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 138 (814)
++.|.+..+++|.+.+.- + ...+.+.++|++|+|||++|+.+++.. ...| +.+..+.
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~f---i~V~~se----- 252 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATF---LRVVGSE----- 252 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCE---EEEecch-----
Confidence 367889999888877631 0 234578899999999999999999987 3333 1221111
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHH-HHhccCceEEEEccccCccc----------------ccccccc---C--
Q 003513 139 KIQETIGKKIGLCNDSWKNKSLEEKAHDIF-KTLSKKKFALLLDDLWERVD----------------LKKIGVP---L-- 196 (814)
Q Consensus 139 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~~~----------------~~~~~~~---~-- 196 (814)
+.... .+ .....+..+. ....+.+.+++||+++.... +..+... +
T Consensus 253 -L~~k~---~G---------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 253 -LIQKY---LG---------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred -hhhhh---cc---------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 11110 01 1112222222 23345788999999864210 0111111 1
Q ss_pred CCCcEEEEecCCccccc-----cCCccceEEeccCCHHhHHHHHHHHhcccc
Q 003513 197 PKNSAVVFTTRFVDVCG-----GMEARRMFKVACLSDEDAWELFREKVGEET 243 (814)
Q Consensus 197 ~~~~~iiiTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~ 243 (814)
..+..||+||....... .......+++...+.++..++|..++....
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~ 371 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMT 371 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCC
Confidence 12567888887544322 123456799999999999999998875443
No 143
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00013 Score=82.69 Aligned_cols=192 Identities=14% Similarity=0.124 Sum_probs=106.0
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhC
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIG 149 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 149 (814)
.++||.+..++.|.+.+..+.-.+.+.++|+.|+||||+|+.+++... -...... .....-.....|...-.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~-c~~~~~~-------~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALN-CEQGLTA-------EPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc-CCCCCCC-------CCCCccHHHHHHhcCCC
Confidence 468999999999999988773345678999999999999999988862 1111000 00000011111110000
Q ss_pred CCC---CCCCCCCHHHHHHHHHHHh-----ccCceEEEEccccCcc--c---cccccccCCCCcEEEEec-CCcccccc-
Q 003513 150 LCN---DSWKNKSLEEKAHDIFKTL-----SKKKFALLLDDLWERV--D---LKKIGVPLPKNSAVVFTT-RFVDVCGG- 214 (814)
Q Consensus 150 ~~~---~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~---~~~~~~~~~~~~~iiiTt-R~~~~~~~- 214 (814)
... +.......++ +..+.+.+ .+++-++|+|+++... . +.+.....+....+|++| ....+...
T Consensus 88 ~d~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 88 VDVFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred CCeeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHH
Confidence 000 0000111111 12222222 2455689999997542 2 222223333456666544 43333321
Q ss_pred CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChH-HHHHHHH
Q 003513 215 MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPL-ALITIGR 273 (814)
Q Consensus 215 ~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 273 (814)
......+++.+++.++....+...+.......+ .+....|++.++|... |+..+-.
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~---~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 167 LSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS---DAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred HHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 223567889999999999888877654332222 6777889999999664 4444433
No 144
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.00 E-value=1e-06 Score=96.77 Aligned_cols=106 Identities=26% Similarity=0.447 Sum_probs=67.1
Q ss_pred ccCcccEEEEEcccCCCcCCCC-CCCCCcccEEEcccCCCccccchhhccCCcccEEEccCCccccccCcccccccccCE
Q 003513 423 VRGWEMVRRLSLMKNSIENLPT-VPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGISKLVSLQL 501 (814)
Q Consensus 423 ~~~~~~l~~L~l~~~~~~~l~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 501 (814)
+..+.+++.|++.+|.+..+.. +..+++|++|++++|.++.+.. +..++.|+.|++++| .+..+. .+..+++|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGN-LISDIS-GLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccC-cchhcc-CCccchhhhc
Confidence 4455667777777777776666 6667777777777776665544 455666777777777 555554 4444666777
Q ss_pred EEecCCCCcccChh-hhcCCCCceeccccccc
Q 003513 502 LDISNTSVTELPED-LKALVNLKCLNLVWAKE 532 (814)
Q Consensus 502 L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~ 532 (814)
+++++|.++.++.. +..+.+|+.+++.+|..
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGNSI 198 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCCch
Confidence 77777766655432 45666666666666543
No 145
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.99 E-value=6.3e-05 Score=88.40 Aligned_cols=154 Identities=16% Similarity=0.242 Sum_probs=91.1
Q ss_pred cccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCC--CCC-CeEEEEEECCccCHHHHHHHHHHH
Q 003513 71 TVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP--KDF-DYVIWVVVSKDLQLEKIQETIGKK 147 (814)
Q Consensus 71 ~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~--~~f-~~~~wv~~~~~~~~~~~~~~i~~~ 147 (814)
.++||+++++++++.|... ...-+.++|++|+|||++|+.+++...... ..+ ...+|. + +...+.. .
T Consensus 183 ~~igr~~ei~~~~~~L~~~-~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~a----~ 252 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRR-KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLLA----G 252 (731)
T ss_pred cccCcHHHHHHHHHHHhcC-CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHhh----h
Confidence 5899999999999988776 445667999999999999999999873211 111 223332 1 1111111 0
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHhc-cCceEEEEccccCcc----------cccccccc-CCCC-cEEEEecCCccccc-
Q 003513 148 IGLCNDSWKNKSLEEKAHDIFKTLS-KKKFALLLDDLWERV----------DLKKIGVP-LPKN-SAVVFTTRFVDVCG- 213 (814)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~----------~~~~~~~~-~~~~-~~iiiTtR~~~~~~- 213 (814)
.. ...+.++.+..+.+.++ .++.+|++|+++... +...+..| +..| -++|-+|...+...
T Consensus 253 ~~------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~ 326 (731)
T TIGR02639 253 TK------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYKNH 326 (731)
T ss_pred cc------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHHHH
Confidence 00 12244555555555543 468999999987431 11222222 3333 34554444322100
Q ss_pred ------cCCccceEEeccCCHHhHHHHHHHHhc
Q 003513 214 ------GMEARRMFKVACLSDEDAWELFREKVG 240 (814)
Q Consensus 214 ------~~~~~~~~~l~~L~~~ea~~l~~~~~~ 240 (814)
.......+++++++.++..+++.....
T Consensus 327 ~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~ 359 (731)
T TIGR02639 327 FEKDRALSRRFQKIDVGEPSIEETVKILKGLKE 359 (731)
T ss_pred hhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHH
Confidence 001234789999999999999987653
No 146
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.97 E-value=5.7e-05 Score=74.63 Aligned_cols=185 Identities=15% Similarity=0.183 Sum_probs=113.0
Q ss_pred CCcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCC-eEEEEEECCccCHHHHHHHHHHH
Q 003513 69 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFD-YVIWVVVSKDLQLEKIQETIGKK 147 (814)
Q Consensus 69 ~~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~ 147 (814)
-.+++|.+..+..+.+.+... ..+....+|++|.|||+-|.+++... -..+-|. .++=.++|....+.-+...+
T Consensus 35 ~de~~gQe~vV~~L~~a~~~~-~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGisvvr~Ki--- 109 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLRR-ILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGISVVREKI--- 109 (346)
T ss_pred HHhhcchHHHHHHHHHHHhhc-CCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccccccccchhhhh---
Confidence 456899999999999999884 78999999999999999999999987 3334443 33434454443332111111
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHh--ccCc-eEEEEccccCc--ccccc---ccccCCCCcEEEEecCCcc-cccc-CCc
Q 003513 148 IGLCNDSWKNKSLEEKAHDIFKTL--SKKK-FALLLDDLWER--VDLKK---IGVPLPKNSAVVFTTRFVD-VCGG-MEA 217 (814)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~l~~~l--~~~~-~LlVlDdv~~~--~~~~~---~~~~~~~~~~iiiTtR~~~-~~~~-~~~ 217 (814)
.+............ ..++ -++|||+++.. +.|.+ ....++...+.|+.+.... +... ...
T Consensus 110 ----------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SR 179 (346)
T KOG0989|consen 110 ----------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSR 179 (346)
T ss_pred ----------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhh
Confidence 11111111100000 0123 47889999765 33333 3334444666655444322 2211 123
Q ss_pred cceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCCh-HHHHHH
Q 003513 218 RRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLP-LALITI 271 (814)
Q Consensus 218 ~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~ 271 (814)
...+..++|.+++..+-++..+..++..-+ .+..+.|++.++|-= -|+.++
T Consensus 180 C~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 180 CQKFRFKKLKDEDIVDRLEKIASKEGVDID---DDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred HHHhcCCCcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCcHHHHHHHH
Confidence 456889999999999999998876664444 677888999998843 344433
No 147
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.94 E-value=0.00054 Score=66.37 Aligned_cols=177 Identities=15% Similarity=0.213 Sum_probs=104.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEE-CCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVV-SKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFK 169 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 169 (814)
+..++.|+|.-|.|||++.++..... .+. +... +.+ ....+...+...|...+..........-.++....+.+
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~---~~d-~~~~-v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASL---NED-QVAV-VVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAA 124 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhc---CCC-ceEE-EEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Confidence 45699999999999999999666655 111 2222 332 34456778888888888763211111122223333333
Q ss_pred Hh-ccCc-eEEEEccccCc--ccccccc---ccCCCC---cEEEEecCCccccc--------cC--CccceEEeccCCHH
Q 003513 170 TL-SKKK-FALLLDDLWER--VDLKKIG---VPLPKN---SAVVFTTRFVDVCG--------GM--EARRMFKVACLSDE 229 (814)
Q Consensus 170 ~l-~~~~-~LlVlDdv~~~--~~~~~~~---~~~~~~---~~iiiTtR~~~~~~--------~~--~~~~~~~l~~L~~~ 229 (814)
.. +++| +.+++||..+. ..++.+. ..-.++ -+|+..-. +.+.. .. ...-.|++.|++.+
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gq-p~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQ-PKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCC-cccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 33 4566 99999998754 2333321 110111 12333222 11111 11 11223899999999
Q ss_pred hHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHHH
Q 003513 230 DAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIGR 273 (814)
Q Consensus 230 ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 273 (814)
+...+++.+..+.....+--..+....|.....|.|.+|..++.
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99999998876544222223356677899999999999988873
No 148
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=0.00041 Score=72.73 Aligned_cols=92 Identities=10% Similarity=0.071 Sum_probs=58.2
Q ss_pred cCceEEEEccccCc--cc---cccccccCCCCcEEEEecCCcc-cccc-CCccceEEeccCCHHhHHHHHHHHhcccccc
Q 003513 173 KKKFALLLDDLWER--VD---LKKIGVPLPKNSAVVFTTRFVD-VCGG-MEARRMFKVACLSDEDAWELFREKVGEETIE 245 (814)
Q Consensus 173 ~~~~LlVlDdv~~~--~~---~~~~~~~~~~~~~iiiTtR~~~-~~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~ 245 (814)
+++-++|||+++.. .. +-+.....++++.+|+||.+.. +... ......+.+.+++.+++.+.+.+......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~~-- 182 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPESD-- 182 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccCC--
Confidence 34556678999754 22 2222233344677777776553 3221 22356799999999999999987642211
Q ss_pred CCCChHHHHHHHHHHcCCChHHHHHH
Q 003513 246 SHHSLPELAQTVAKECRGLPLALITI 271 (814)
Q Consensus 246 ~~~~~~~~~~~i~~~~~g~Plal~~~ 271 (814)
.+.+..++..++|.|..+..+
T Consensus 183 -----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 -----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -----hHHHHHHHHHcCCCHHHHHHH
Confidence 445667889999999866544
No 149
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.92 E-value=7.3e-05 Score=78.94 Aligned_cols=148 Identities=20% Similarity=0.214 Sum_probs=91.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCC--eEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFD--YVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIF 168 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 168 (814)
....+.|||..|.|||.|++++.+.. ..... .+++++ .+.....+...+.. .....++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~~------se~f~~~~v~a~~~-----------~~~~~Fk 171 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYLT------SEDFTNDFVKALRD-----------NEMEKFK 171 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEecc------HHHHHHHHHHHHHh-----------hhHHHHH
Confidence 47799999999999999999999998 33333 344442 33344444433321 1233444
Q ss_pred HHhccCceEEEEccccCccc----cccccccC----CCCcEEEEecCCcc---------ccccCCccceEEeccCCHHhH
Q 003513 169 KTLSKKKFALLLDDLWERVD----LKKIGVPL----PKNSAVVFTTRFVD---------VCGGMEARRMFKVACLSDEDA 231 (814)
Q Consensus 169 ~~l~~~~~LlVlDdv~~~~~----~~~~~~~~----~~~~~iiiTtR~~~---------~~~~~~~~~~~~l~~L~~~ea 231 (814)
+.. .-=++++||++.... -+.+...+ ..|..||+|++... +..++...-++++.+.+.+..
T Consensus 172 ~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r 249 (408)
T COG0593 172 EKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETR 249 (408)
T ss_pred Hhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHH
Confidence 444 334889999975322 12222222 22668999996432 233445567899999999999
Q ss_pred HHHHHHHhccccccCCCChHHHHHHHHHHcCC
Q 003513 232 WELFREKVGEETIESHHSLPELAQTVAKECRG 263 (814)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 263 (814)
..++.+++.......+ +++..-|++....
T Consensus 250 ~aiL~kka~~~~~~i~---~ev~~~la~~~~~ 278 (408)
T COG0593 250 LAILRKKAEDRGIEIP---DEVLEFLAKRLDR 278 (408)
T ss_pred HHHHHHHHHhcCCCCC---HHHHHHHHHHhhc
Confidence 9999998765553444 4455555554443
No 150
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=2.7e-06 Score=82.91 Aligned_cols=100 Identities=23% Similarity=0.310 Sum_probs=67.4
Q ss_pred cEEEEEcccCCCcCCCCC----CCCCcccEEEcccCCCcccc--chhhccCCcccEEEccCCc---cccccCcccccccc
Q 003513 428 MVRRLSLMKNSIENLPTV----PTCPHLLTLFLNRNPLRTIT--GGFFQSMSCLTVLKMSDNI---MLRQLPMGISKLVS 498 (814)
Q Consensus 428 ~l~~L~l~~~~~~~l~~~----~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~L~~~~---~~~~lp~~i~~l~~ 498 (814)
.+..+.+.++.+...-.+ ..++.++.|+|.+|.+.+.. ..++.+||+|++|+|+.|. .++.+| -.+.+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~n 122 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKN 122 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccc
Confidence 344566666665544322 46778888899888876543 3446788999999998882 222333 34568
Q ss_pred cCEEEecCCCCc--ccChhhhcCCCCceeccccc
Q 003513 499 LQLLDISNTSVT--ELPEDLKALVNLKCLNLVWA 530 (814)
Q Consensus 499 L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~ 530 (814)
|+.|-|.++.+. ..-..+..++.++.|+++.|
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 888888888654 55666777888888888776
No 151
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.91 E-value=1.3e-05 Score=56.02 Aligned_cols=38 Identities=32% Similarity=0.579 Sum_probs=17.1
Q ss_pred cccEEEccCCccccccCcccccccccCEEEecCCCCccc
Q 003513 474 CLTVLKMSDNIMLRQLPMGISKLVSLQLLDISNTSVTEL 512 (814)
Q Consensus 474 ~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~l 512 (814)
+|++|++++| .++++|..+++|++|++|++++|+++.+
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 3444444444 4444444444444444444444444433
No 152
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=0.00045 Score=71.98 Aligned_cols=194 Identities=18% Similarity=0.144 Sum_probs=109.5
Q ss_pred cccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCC------------CCCCeEEEEEECCccCHH
Q 003513 71 TVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP------------KDFDYVIWVVVSKDLQLE 138 (814)
Q Consensus 71 ~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~------------~~f~~~~wv~~~~~~~~~ 138 (814)
.++|.+..++.+.+.+..+.-.+...++|+.|+||+++|..++....-.. ....-+.|+.-.....-.
T Consensus 5 ~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~ 84 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGK 84 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccccc
Confidence 58999999999999998874458999999999999999999988762111 111223444321100000
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc-----cCceEEEEccccCcc--c---cccccccCCCCcEEEEecC-
Q 003513 139 KIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLS-----KKKFALLLDDLWERV--D---LKKIGVPLPKNSAVVFTTR- 207 (814)
Q Consensus 139 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~--~---~~~~~~~~~~~~~iiiTtR- 207 (814)
.+-..-++..+........-..++ ++.+.+.+. +++-++|+|+++... . +-+...-.+ .+.+|++|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 85 LITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred ccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECC
Confidence 000111112221110001112222 334444443 467799999987542 1 222222223 445555444
Q ss_pred Ccccccc-CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHH
Q 003513 208 FVDVCGG-MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIG 272 (814)
Q Consensus 208 ~~~~~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 272 (814)
...+... ......+++.++++++..+.+.+...... .......++..++|.|..+..+.
T Consensus 163 ~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 163 PESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred hHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHHHH
Confidence 3333321 23456899999999999999988743211 01124678999999997665433
No 153
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.91 E-value=0.00026 Score=77.83 Aligned_cols=155 Identities=17% Similarity=0.231 Sum_probs=89.3
Q ss_pred cccchhHHHHHHHHHHhc-----------C-CCceEEEEEcCCCCcHHHHHHHHHhhhccC--CCCCCeEEEEEECCccC
Q 003513 71 TVVGLQSQLEQVWRCLVQ-----------E-PAAGIIGLYGMGGVGKTTLLTQINNKFVDN--PKDFDYVIWVVVSKDLQ 136 (814)
Q Consensus 71 ~~vGr~~~~~~l~~~L~~-----------~-~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~--~~~f~~~~wv~~~~~~~ 136 (814)
.+.|.+..+++|.+.+.- + ...+-+.++|++|+|||++|+++++..... ........|+.+....
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e- 261 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE- 261 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh-
Confidence 477899999998887531 1 234678999999999999999999987211 0012234555543321
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-----ccCceEEEEccccCcc---------c-----ccccccc--
Q 003513 137 LEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTL-----SKKKFALLLDDLWERV---------D-----LKKIGVP-- 195 (814)
Q Consensus 137 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~---------~-----~~~~~~~-- 195 (814)
+.. .. ....+..+..+.+.. .+++.+++||+++... + +..+...
T Consensus 262 ---Ll~----ky--------vGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 262 ---LLN----KY--------VGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred ---hcc----cc--------cchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 110 00 011122222222222 2478999999997431 1 1112111
Q ss_pred -CC--CCcEEEEecCCcccc-----ccCCccceEEeccCCHHhHHHHHHHHhcc
Q 003513 196 -LP--KNSAVVFTTRFVDVC-----GGMEARRMFKVACLSDEDAWELFREKVGE 241 (814)
Q Consensus 196 -~~--~~~~iiiTtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~l~~~~~~~ 241 (814)
+. .+..||.||...... +.-.-+..++++..+.++..++|..+...
T Consensus 327 gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 327 GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 11 144556666544332 21133557999999999999999988643
No 154
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.89 E-value=0.00029 Score=75.78 Aligned_cols=167 Identities=16% Similarity=0.228 Sum_probs=95.4
Q ss_pred cccchhHHHHHHHHHHhc-----------C-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHH
Q 003513 71 TVVGLQSQLEQVWRCLVQ-----------E-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLE 138 (814)
Q Consensus 71 ~~vGr~~~~~~l~~~L~~-----------~-~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 138 (814)
++.|.+..+++|.+.+.- + ...+-+.++|++|+|||++|+++++.. ...| +.+.. .
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f---i~i~~------s 213 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF---IRVVG------S 213 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE---EEEeh------H
Confidence 467888888888776531 1 245678999999999999999999986 3333 22211 1
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhccCceEEEEccccCcc------------c----ccccccc---C--
Q 003513 139 KIQETIGKKIGLCNDSWKNKSLEEKAHDIFK-TLSKKKFALLLDDLWERV------------D----LKKIGVP---L-- 196 (814)
Q Consensus 139 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~------------~----~~~~~~~---~-- 196 (814)
.+.... .+ .. ......+.+ .....+.+|+||+++... . +..+... +
T Consensus 214 ~l~~k~---~g--------e~-~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 214 EFVQKY---LG--------EG-PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred HHHHHh---cc--------hh-HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 111111 11 11 122222322 334578999999986421 0 1111111 1
Q ss_pred CCCcEEEEecCCccccc-----cCCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCCh
Q 003513 197 PKNSAVVFTTRFVDVCG-----GMEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLP 265 (814)
Q Consensus 197 ~~~~~iiiTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 265 (814)
..+..||+||....... ....+..++++..+.++...+|..+........+-+ ..++++.+.|.-
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 12567888887554321 113456789999999998888887765433222222 345666666543
No 155
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.87 E-value=0.00058 Score=66.52 Aligned_cols=48 Identities=25% Similarity=0.406 Sum_probs=39.3
Q ss_pred CCcccchhHHHHHHHHHHh---cCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 69 EPTVVGLQSQLEQVWRCLV---QEPAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 69 ~~~~vGr~~~~~~l~~~L~---~~~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
...++|.|..++.|++-.. .+....-+.+||..|.|||++++++.+.+
T Consensus 26 l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 26 LDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 3468999999998877543 34356678889999999999999999988
No 156
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.86 E-value=0.00081 Score=70.53 Aligned_cols=171 Identities=15% Similarity=0.171 Sum_probs=108.5
Q ss_pred CCcccchhHHHHHHHHHHhc---CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHH
Q 003513 69 EPTVVGLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIG 145 (814)
Q Consensus 69 ~~~~vGr~~~~~~l~~~L~~---~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 145 (814)
+..++||+.++..+.+++.. .+....+.|.|-+|.|||.+...++.+....... ..++++.+..-.....++..|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHHHHH
Confidence 45689999999999999865 2467889999999999999999999988322222 2457777766556667777777
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhccC--ceEEEEccccCcc-----cccc-ccccCCCCcEEEEecCCc------cc
Q 003513 146 KKIGLCNDSWKNKSLEEKAHDIFKTLSKK--KFALLLDDLWERV-----DLKK-IGVPLPKNSAVVFTTRFV------DV 211 (814)
Q Consensus 146 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~--~~LlVlDdv~~~~-----~~~~-~~~~~~~~~~iiiTtR~~------~~ 211 (814)
..+--... ......+....+.+..++. .+|+|+|..+... .+-. |..+--.++++|+.---. ..
T Consensus 228 ~~~~q~~~--s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 228 SSLLQDLV--SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHhc--CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 66511000 1122255566666666553 5899999987541 1111 111111255555432110 11
Q ss_pred cccC-----CccceEEeccCCHHhHHHHHHHHhccc
Q 003513 212 CGGM-----EARRMFKVACLSDEDAWELFREKVGEE 242 (814)
Q Consensus 212 ~~~~-----~~~~~~~l~~L~~~ea~~l~~~~~~~~ 242 (814)
...+ -....+..+|.+.++-.+++.++....
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~ 341 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE 341 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc
Confidence 1111 123578889999999999999987544
No 157
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.84 E-value=8.8e-05 Score=88.25 Aligned_cols=152 Identities=20% Similarity=0.263 Sum_probs=90.8
Q ss_pred cccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCC--CCC-CeEEEEEECCccCHHHHHHHHHHH
Q 003513 71 TVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP--KDF-DYVIWVVVSKDLQLEKIQETIGKK 147 (814)
Q Consensus 71 ~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~--~~f-~~~~wv~~~~~~~~~~~~~~i~~~ 147 (814)
.++||+++++++++.|... ...-+.++|++|+|||++|..++....... ... ...+|. + +...+..
T Consensus 180 ~~igr~~ei~~~~~~L~r~-~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a----- 248 (821)
T CHL00095 180 PVIGREKEIERVIQILGRR-TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA----- 248 (821)
T ss_pred CCCCcHHHHHHHHHHHccc-ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc-----
Confidence 4799999999999999876 344567999999999999999999873211 111 233442 1 1111111
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHhc-cCceEEEEccccCcc---------cccccccc-CCC-CcEEEEecCCccccc--
Q 003513 148 IGLCNDSWKNKSLEEKAHDIFKTLS-KKKFALLLDDLWERV---------DLKKIGVP-LPK-NSAVVFTTRFVDVCG-- 213 (814)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~---------~~~~~~~~-~~~-~~~iiiTtR~~~~~~-- 213 (814)
+.. ...+.++.+..+.+.++ .++.+|++|+++... +...+..| +.. .-++|.+|...+...
T Consensus 249 -g~~----~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~i 323 (821)
T CHL00095 249 -GTK----YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHI 323 (821)
T ss_pred -cCC----CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHHH
Confidence 111 22345555555555443 468999999996331 11222222 222 355666665443211
Q ss_pred -----cCCccceEEeccCCHHhHHHHHHHH
Q 003513 214 -----GMEARRMFKVACLSDEDAWELFREK 238 (814)
Q Consensus 214 -----~~~~~~~~~l~~L~~~ea~~l~~~~ 238 (814)
.......+.++..+.+|..+++...
T Consensus 324 e~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 324 EKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred hcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 1112356888999999998888754
No 158
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.83 E-value=0.00017 Score=83.57 Aligned_cols=154 Identities=18% Similarity=0.257 Sum_probs=90.7
Q ss_pred cccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCC---CCeEEEEEECCccCHHHHHHHHHHH
Q 003513 71 TVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKD---FDYVIWVVVSKDLQLEKIQETIGKK 147 (814)
Q Consensus 71 ~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~~i~~~ 147 (814)
.++||+.+++++++.|... ...-+.++|++|+|||++|+.+++........ .+..+|.. +...+ ..
T Consensus 187 ~liGR~~ei~~~i~iL~r~-~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la- 255 (758)
T PRK11034 187 PLIGREKELERAIQVLCRR-RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA- 255 (758)
T ss_pred cCcCCCHHHHHHHHHHhcc-CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc-
Confidence 4899999999999999875 33455689999999999999999876322111 12333321 11111 10
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHh-ccCceEEEEccccCc----------ccccccccc-CCC-CcEEEEecCCccccc-
Q 003513 148 IGLCNDSWKNKSLEEKAHDIFKTL-SKKKFALLLDDLWER----------VDLKKIGVP-LPK-NSAVVFTTRFVDVCG- 213 (814)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~----------~~~~~~~~~-~~~-~~~iiiTtR~~~~~~- 213 (814)
+.. ...+.++....+.+.+ +.++.+|+||+++.. .+...+..| +.. .-++|-+|...+...
T Consensus 256 -G~~----~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~ 330 (758)
T PRK11034 256 -GTK----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNI 330 (758)
T ss_pred -ccc----hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHHHH
Confidence 100 1224445555555544 346789999999743 112112222 222 344555554333210
Q ss_pred ------cCCccceEEeccCCHHhHHHHHHHHhc
Q 003513 214 ------GMEARRMFKVACLSDEDAWELFREKVG 240 (814)
Q Consensus 214 ------~~~~~~~~~l~~L~~~ea~~l~~~~~~ 240 (814)
.......+.+++++.+++.+++.....
T Consensus 331 ~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~ 363 (758)
T PRK11034 331 FEKDRALARRFQKIDITEPSIEETVQIINGLKP 363 (758)
T ss_pred hhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 001224799999999999999987653
No 159
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.82 E-value=0.00024 Score=73.23 Aligned_cols=152 Identities=11% Similarity=0.041 Sum_probs=79.4
Q ss_pred cccchhHHHHHHHHHHh--------c--C----CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccC
Q 003513 71 TVVGLQSQLEQVWRCLV--------Q--E----PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQ 136 (814)
Q Consensus 71 ~~vGr~~~~~~l~~~L~--------~--~----~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 136 (814)
.++|.+..+++|.++.. . + .....+.++|++|+||||+|+.++....+.. .....-|+.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g-~~~~~~~v~v~~--- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLG-YVRKGHLVSVTR--- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcC-CcccceEEEecH---
Confidence 46787776666655321 0 1 0123688999999999999998887762211 111112444432
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCc-----------cccccc---cccCCCCcEE
Q 003513 137 LEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWER-----------VDLKKI---GVPLPKNSAV 202 (814)
Q Consensus 137 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~~~~~~---~~~~~~~~~i 202 (814)
.++ ...+... ........+.+ . ..-+|+||++... .....+ ......+.+|
T Consensus 99 -~~l----~~~~~g~-------~~~~~~~~~~~-a--~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~v 163 (284)
T TIGR02880 99 -DDL----VGQYIGH-------TAPKTKEILKR-A--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVV 163 (284)
T ss_pred -HHH----hHhhccc-------chHHHHHHHHH-c--cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEE
Confidence 122 2111111 11111112222 1 3368999998632 111111 1111225666
Q ss_pred EEecCCcccccc--C------CccceEEeccCCHHhHHHHHHHHhcc
Q 003513 203 VFTTRFVDVCGG--M------EARRMFKVACLSDEDAWELFREKVGE 241 (814)
Q Consensus 203 iiTtR~~~~~~~--~------~~~~~~~l~~L~~~ea~~l~~~~~~~ 241 (814)
|+++........ . .....+++++++.+|..+++...+..
T Consensus 164 I~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 164 ILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred EEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 666653322110 0 12356899999999999999888654
No 160
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.82 E-value=4.6e-07 Score=98.31 Aligned_cols=128 Identities=24% Similarity=0.309 Sum_probs=81.8
Q ss_pred cccEEEEEcccCCCcCCC-CCCCCCcccEEEcccCCCccccchhhccCCcccEEEccCCccccccCcc-cccccccCEEE
Q 003513 426 WEMVRRLSLMKNSIENLP-TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMG-ISKLVSLQLLD 503 (814)
Q Consensus 426 ~~~l~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L~ 503 (814)
|.+|...++++|.+..+. ++.-++.|+.|+|++|.+.+.. ++..|++|++|||++| .+..+|.- ...+ +|+.|.
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhh-hheeee
Confidence 455666666666655443 3455677777777777766554 4677777888888877 66666532 1222 377788
Q ss_pred ecCCCCcccChhhhcCCCCceeccccccccceeCccccCCCcccceeeccccCcc
Q 003513 504 ISNTSVTELPEDLKALVNLKCLNLVWAKELVVVPQQLLSNFSRLRVLRMFATGFL 558 (814)
Q Consensus 504 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~ 558 (814)
+++|.++++ .++.+|.+|+.||+++|-...----..++.|..|+.|++.+|.+.
T Consensus 239 lrnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 239 LRNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ecccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 888777777 467778888888887774322111112566777777777777663
No 161
>CHL00181 cbbX CbbX; Provisional
Probab=97.82 E-value=0.00047 Score=70.98 Aligned_cols=153 Identities=12% Similarity=0.127 Sum_probs=80.9
Q ss_pred cccchhHHHHHHHHHHh--------c--C----CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccC
Q 003513 71 TVVGLQSQLEQVWRCLV--------Q--E----PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQ 136 (814)
Q Consensus 71 ~~vGr~~~~~~l~~~L~--------~--~----~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 136 (814)
.++|.+..+++|.++.. . + +....+.++|++|+||||+|+.+++..... ..-...-|+.++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~-g~~~~~~~~~v~~--- 99 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKL-GYIKKGHLLTVTR--- 99 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHc-CCCCCCceEEecH---
Confidence 47887776665544421 1 1 123358899999999999999998875211 1111112444442
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCc-----------cccccc---cccCCCCcEE
Q 003513 137 LEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWER-----------VDLKKI---GVPLPKNSAV 202 (814)
Q Consensus 137 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~~~~~~---~~~~~~~~~i 202 (814)
..+.... .+. ........+.+ . ..-+|+||++... +....+ ......+.+|
T Consensus 100 -~~l~~~~---~g~--------~~~~~~~~l~~-a--~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~v 164 (287)
T CHL00181 100 -DDLVGQY---IGH--------TAPKTKEVLKK-A--MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVV 164 (287)
T ss_pred -HHHHHHH---hcc--------chHHHHHHHHH-c--cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEE
Confidence 1222111 110 11111112222 1 2349999998642 111111 1112235667
Q ss_pred EEecCCccccc--------cCCccceEEeccCCHHhHHHHHHHHhccc
Q 003513 203 VFTTRFVDVCG--------GMEARRMFKVACLSDEDAWELFREKVGEE 242 (814)
Q Consensus 203 iiTtR~~~~~~--------~~~~~~~~~l~~L~~~ea~~l~~~~~~~~ 242 (814)
|+++....+.. .-.....+.+++++.+|..+++...+...
T Consensus 165 I~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 165 IFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred EEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 77765333211 00134579999999999999998887543
No 162
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.81 E-value=0.00027 Score=84.43 Aligned_cols=152 Identities=17% Similarity=0.223 Sum_probs=89.2
Q ss_pred cccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCC----CCe-EEEEEECCccCHHHHHHHHH
Q 003513 71 TVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKD----FDY-VIWVVVSKDLQLEKIQETIG 145 (814)
Q Consensus 71 ~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~----f~~-~~wv~~~~~~~~~~~~~~i~ 145 (814)
.++||+.++++++..|... ....+.++|++|+|||++|..++.+... ... ... ++.+++ ..+. +
T Consensus 174 ~~igr~~ei~~~~~~l~r~-~~~n~lL~G~pGvGKT~l~~~la~~i~~-~~~p~~l~~~~~~~l~~------~~l~---a 242 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRR-TKNNPVLIGEPGVGKTAIVEGLAQRIVN-GDVPESLKNKRLLALDM------GALI---A 242 (852)
T ss_pred cCCCcHHHHHHHHHHHhcC-CCCceEEEcCCCCCHHHHHHHHHHHHhc-cCCchhhcCCeEEEeeH------HHHh---h
Confidence 4899999999999999776 4455668999999999999999998722 111 112 222221 1111 0
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhc--cCceEEEEccccCcc---------cccccccc-CCCC-cEEEEecCCcccc
Q 003513 146 KKIGLCNDSWKNKSLEEKAHDIFKTLS--KKKFALLLDDLWERV---------DLKKIGVP-LPKN-SAVVFTTRFVDVC 212 (814)
Q Consensus 146 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~---------~~~~~~~~-~~~~-~~iiiTtR~~~~~ 212 (814)
+.. ...+.+..+..+.+.+. +++.+|++|+++... +...+..| +..| -++|.+|...+.-
T Consensus 243 ---~~~----~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 243 ---GAK----YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYR 315 (852)
T ss_pred ---cch----hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHH
Confidence 000 11234444444544443 468999999997442 11122222 2223 4555555433321
Q ss_pred c-------cCCccceEEeccCCHHhHHHHHHHHhc
Q 003513 213 G-------GMEARRMFKVACLSDEDAWELFREKVG 240 (814)
Q Consensus 213 ~-------~~~~~~~~~l~~L~~~ea~~l~~~~~~ 240 (814)
. .......+.++..+.++..+++.....
T Consensus 316 ~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~ 350 (852)
T TIGR03346 316 KYIEKDAALERRFQPVFVDEPTVEDTISILRGLKE 350 (852)
T ss_pred HHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHH
Confidence 0 011234688999999999999987643
No 163
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.79 E-value=0.00015 Score=86.16 Aligned_cols=153 Identities=20% Similarity=0.243 Sum_probs=88.8
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCC--C--CCCeEEEEEECCccCHHHHHHHHH
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP--K--DFDYVIWVVVSKDLQLEKIQETIG 145 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~--~--~f~~~~wv~~~~~~~~~~~~~~i~ 145 (814)
..++||+.+++++++.|... ....+.++|++|+|||++|+.++....... . .-..+++++.+. +..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~-~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~a--- 247 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR-TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LVA--- 247 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC-CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hhh---
Confidence 34899999999999999876 445667999999999999999999873210 0 011233332221 110
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHh--ccCceEEEEccccCcc---------cccccccc-CCCC-cEEEEecCCcccc
Q 003513 146 KKIGLCNDSWKNKSLEEKAHDIFKTL--SKKKFALLLDDLWERV---------DLKKIGVP-LPKN-SAVVFTTRFVDVC 212 (814)
Q Consensus 146 ~~l~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~---------~~~~~~~~-~~~~-~~iiiTtR~~~~~ 212 (814)
+.. ...+.++....+.+.+ .+++.+|++|+++... +...+..| +..| -++|-||...+..
T Consensus 248 ---g~~----~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r 320 (857)
T PRK10865 248 ---GAK----YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYR 320 (857)
T ss_pred ---ccc----hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHH
Confidence 000 1223444444444433 2478999999987542 12222233 2333 4555555433321
Q ss_pred -------ccCCccceEEeccCCHHhHHHHHHHHh
Q 003513 213 -------GGMEARRMFKVACLSDEDAWELFREKV 239 (814)
Q Consensus 213 -------~~~~~~~~~~l~~L~~~ea~~l~~~~~ 239 (814)
........+.+...+.++...+++...
T Consensus 321 ~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 321 QYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 001122356777779999999887664
No 164
>PRK10536 hypothetical protein; Provisional
Probab=97.78 E-value=0.00045 Score=68.20 Aligned_cols=132 Identities=14% Similarity=0.129 Sum_probs=76.9
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEEC----C-----ccCH---
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVS----K-----DLQL--- 137 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~----~-----~~~~--- 137 (814)
..+.+|......+..++.+. .+|.++|++|.|||+||.+++.+... .+.|+.++-..-. + +-+.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~---~lV~i~G~aGTGKT~La~a~a~~~l~-~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK---QLIFATGEAGCGKTWISAAKAAEALI-HKDVDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC---CeEEEECCCCCCHHHHHHHHHHHHHh-cCCeeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 34678888888888888765 59999999999999999999886411 2345544333211 0 0111
Q ss_pred -HHHHHHHHHHhCCCCCCCCCCCHHHHHH--------HHHHHhccCce---EEEEccccCc--cccccccccCCCCcEEE
Q 003513 138 -EKIQETIGKKIGLCNDSWKNKSLEEKAH--------DIFKTLSKKKF---ALLLDDLWER--VDLKKIGVPLPKNSAVV 203 (814)
Q Consensus 138 -~~~~~~i~~~l~~~~~~~~~~~~~~~~~--------~l~~~l~~~~~---LlVlDdv~~~--~~~~~~~~~~~~~~~ii 203 (814)
.-.++.+.+.+..-. .....+.... .-..+++++.+ +||+|++.+. .+...+....+.++++|
T Consensus 131 ~~p~~~pi~D~L~~~~---~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~g~~sk~v 207 (262)
T PRK10536 131 FAPYFRPVYDVLVRRL---GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVI 207 (262)
T ss_pred HHHHHHHHHHHHHHHh---ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhcCCCCEEE
Confidence 112222222221100 0001111110 01235566554 9999999865 45556666677899999
Q ss_pred EecCC
Q 003513 204 FTTRF 208 (814)
Q Consensus 204 iTtR~ 208 (814)
+|--.
T Consensus 208 ~~GD~ 212 (262)
T PRK10536 208 VNGDI 212 (262)
T ss_pred EeCCh
Confidence 98654
No 165
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.77 E-value=6.7e-05 Score=79.09 Aligned_cols=64 Identities=22% Similarity=0.322 Sum_probs=45.9
Q ss_pred hccCCcccEEEccCCccccccCcccccccccCEEEecCC-CCcccChhhhcCCCCceeccccccccceeCc
Q 003513 469 FQSMSCLTVLKMSDNIMLRQLPMGISKLVSLQLLDISNT-SVTELPEDLKALVNLKCLNLVWAKELVVVPQ 538 (814)
Q Consensus 469 ~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~ 538 (814)
+..++++++|++++| .+..+|. --.+|+.|.+++| .++.+|..+. .+|++|++++|..+..+|.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc
Confidence 455788888888888 7888872 1235888888887 6777776553 5788888888865555554
No 166
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.77 E-value=3.9e-06 Score=92.22 Aligned_cols=170 Identities=26% Similarity=0.297 Sum_probs=129.2
Q ss_pred ccEEEEcCCCcccCCCCccCcccEEEEEcccCCCcCCCCCCCCCcccEEEcccCCCccccchhhccCCcccEEEccCCcc
Q 003513 406 EGFLVYAGSGLTKAPADVRGWEMVRRLSLMKNSIENLPTVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIM 485 (814)
Q Consensus 406 ~~~l~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 485 (814)
-..+...++.+..+...+..+.+|++|++++|.+..+..+..++.|+.|++.+|.+..+.. +..++.|+.+++++| .
T Consensus 97 l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~l~~n-~ 173 (414)
T KOG0531|consen 97 LEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG--LESLKSLKLLDLSYN-R 173 (414)
T ss_pred eeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccC--CccchhhhcccCCcc-h
Confidence 4567778888888833388899999999999999999999999999999999999887765 667999999999999 7
Q ss_pred ccccCcc-cccccccCEEEecCCCCcccChhhhcCCCCceeccccccccceeCccccCCCcc--cceeeccccCcccchh
Q 003513 486 LRQLPMG-ISKLVSLQLLDISNTSVTELPEDLKALVNLKCLNLVWAKELVVVPQQLLSNFSR--LRVLRMFATGFLLSSW 562 (814)
Q Consensus 486 ~~~lp~~-i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~--L~~L~l~~~~~~~~~~ 562 (814)
+..+... +..+.+|+.+.+.+|.+..+. .+..+..+..+++..+.. ..+-. +..+.. |+.+++.++..
T Consensus 174 i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i-~~~~~--l~~~~~~~L~~l~l~~n~i----- 244 (414)
T KOG0531|consen 174 IVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKI-SKLEG--LNELVMLHLRELYLSGNRI----- 244 (414)
T ss_pred hhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccc-eeccC--cccchhHHHHHHhcccCcc-----
Confidence 7777643 588899999999999888663 455566666667777754 22222 333444 88899888876
Q ss_pred hhchHHHHcCCCCccEEEEEecChhh
Q 003513 563 HENVAEELLGLKYLEVLEISFRSFEA 588 (814)
Q Consensus 563 ~~~~~~~l~~l~~L~~L~l~~~~~~~ 588 (814)
...+..+..+.++..|++..+....
T Consensus 245 -~~~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 245 -SRSPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred -ccccccccccccccccchhhccccc
Confidence 1222556667777777777666544
No 167
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.76 E-value=2.7e-06 Score=73.26 Aligned_cols=109 Identities=15% Similarity=0.243 Sum_probs=79.3
Q ss_pred EEEEEcccCCCcCCCC----CCCCCcccEEEcccCCCccccchhhccCCcccEEEccCCccccccCcccccccccCEEEe
Q 003513 429 VRRLSLMKNSIENLPT----VPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGISKLVSLQLLDI 504 (814)
Q Consensus 429 l~~L~l~~~~~~~l~~----~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l 504 (814)
+..++|+.+.+..++. +....+|...++++|.+.++|+.|-.+++.+..|+|++| .+.++|..+..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhccc
Confidence 3345555565554432 455667777888888888888887777778888888888 77888888888888888888
Q ss_pred cCCCCcccChhhhcCCCCceeccccccccceeCcc
Q 003513 505 SNTSVTELPEDLKALVNLKCLNLVWAKELVVVPQQ 539 (814)
Q Consensus 505 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~ 539 (814)
+.|.+...|.-+..|.+|-.|+..++.. ..+|.+
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~-~eid~d 141 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENAR-AEIDVD 141 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCcc-ccCcHH
Confidence 8888888887777788888887776643 445543
No 168
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=1.6e-05 Score=77.64 Aligned_cols=227 Identities=14% Similarity=0.074 Sum_probs=120.4
Q ss_pred cccEEEcccCCCcccc--chhhccCCcccEEEccCCccccc---cCcccccccccCEEEecCCCCcccChhh-hcCCCCc
Q 003513 450 HLLTLFLNRNPLRTIT--GGFFQSMSCLTVLKMSDNIMLRQ---LPMGISKLVSLQLLDISNTSVTELPEDL-KALVNLK 523 (814)
Q Consensus 450 ~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~---lp~~i~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~ 523 (814)
-+..|.+.++.+.... ..+-..+.+++.|||.+| .+.. +..-+.+|++|++|+++.|.+..--..+ .-+.+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 3445556666554332 333456788888888888 5543 3444567888888888888765211112 2457788
Q ss_pred eeccccccccceeCccccCCCcccceeeccccCcccchhhhchHHHHcCCCCccEEEEEecChhhHHHHhccccccccce
Q 003513 524 CLNLVWAKELVVVPQQLLSNFSRLRVLRMFATGFLLSSWHENVAEELLGLKYLEVLEISFRSFEAYQTFLSSQKLRSCTH 603 (814)
Q Consensus 524 ~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 603 (814)
.|-|.++.....-....+..++.++.|+++.|++-.-.....-.+.. -+.+++|....|......+........+++.
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~--s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~ 202 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDW--STEVLTLHQLPCLEQLWLNKNKLSRIFPNVN 202 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcccccccccc--chhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence 88887775433333334566777778877777441110011000000 1234444444444444333333333444555
Q ss_pred eeeecccCCCCcccccCccCCCCCcEEEeccCCCcceEEecccccccccCCccccCCccEEeeecCccccccc-------
Q 003513 604 ALLLHRFDREESIDVADLADLEQLNTLDFYGCGCIKGLKIDCNDMVQKSRQPYVFRSLEKVTVRFCRNLRHLT------- 676 (814)
Q Consensus 604 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~------- 676 (814)
.+.+..|+-.+.........++.+..|+++.+. ..+|.. ......|++|..|.+.+.+-+..+.
T Consensus 203 sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~-----idswas----vD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~l 273 (418)
T KOG2982|consen 203 SVFVCEGPLKTESSEKGSEPFPSLSCLNLGANN-----IDSWAS----VDALNGFPQLVDLRVSENPLSDPLRGGERRFL 273 (418)
T ss_pred heeeecCcccchhhcccCCCCCcchhhhhcccc-----cccHHH----HHHHcCCchhheeeccCCcccccccCCcceEE
Confidence 566655543333333444555666666666544 122222 1223457777777777766444332
Q ss_pred ccccCCCCcEEE
Q 003513 677 FLVFAPNLKSIS 688 (814)
Q Consensus 677 ~l~~l~~L~~L~ 688 (814)
.++.+++++.|+
T Consensus 274 lIaRL~~v~vLN 285 (418)
T KOG2982|consen 274 LIARLTKVQVLN 285 (418)
T ss_pred EEeeccceEEec
Confidence 134567777665
No 169
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.75 E-value=0.0012 Score=68.66 Aligned_cols=179 Identities=12% Similarity=0.050 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCe-E----EEEEECCccCHHHHHHHHHHHhCC
Q 003513 76 QSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDY-V----IWVVVSKDLQLEKIQETIGKKIGL 150 (814)
Q Consensus 76 ~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~-~----~wv~~~~~~~~~~~~~~i~~~l~~ 150 (814)
+...+++...+..+.-...+.++|+.|+||+++|..++....- ...... . -|+.....+|+..+. ..
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC-~~~~~~~~c~~c~~~~~g~HPD~~~i~-------~~ 81 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA-SGPDPAAAQRTRQLIAAGTHPDLQLVS-------FI 81 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC-CCCCCCCcchHHHHHhcCCCCCEEEEe-------cC
Confidence 3455667777766634557899999999999999999887621 110000 0 000000001100000 00
Q ss_pred CCCCC----CCCCHHHHHHHHHHHh-----ccCceEEEEccccCcc-----ccccccccCCCCcEEEEecCCc-ccccc-
Q 003513 151 CNDSW----KNKSLEEKAHDIFKTL-----SKKKFALLLDDLWERV-----DLKKIGVPLPKNSAVVFTTRFV-DVCGG- 214 (814)
Q Consensus 151 ~~~~~----~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~-----~~~~~~~~~~~~~~iiiTtR~~-~~~~~- 214 (814)
+.+.. ..-.++ .+..+.+.+ .+++-++|||+++... .+-+...--++++.+|++|.+. .+...
T Consensus 82 p~~~~~k~~~~I~id-qIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTI 160 (319)
T PRK08769 82 PNRTGDKLRTEIVIE-QVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATI 160 (319)
T ss_pred CCcccccccccccHH-HHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHH
Confidence 00000 001122 222333333 2456799999997542 2333333334577666666543 33322
Q ss_pred CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHH
Q 003513 215 MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIG 272 (814)
Q Consensus 215 ~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 272 (814)
..-...+.+.+++.+++.+.+.+. + . + ++.+..++..++|.|+.+..+.
T Consensus 161 rSRCq~i~~~~~~~~~~~~~L~~~-~-~----~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 161 RSRCQRLEFKLPPAHEALAWLLAQ-G-V----S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred HhhheEeeCCCcCHHHHHHHHHHc-C-C----C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 223567899999999999988753 1 1 1 3446778999999998765544
No 170
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.73 E-value=0.0009 Score=70.69 Aligned_cols=159 Identities=8% Similarity=0.007 Sum_probs=85.6
Q ss_pred cccc-hhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhC
Q 003513 71 TVVG-LQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIG 149 (814)
Q Consensus 71 ~~vG-r~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 149 (814)
.++| -+..++.+...+..+.-.....++|+.|+||||+|+.+++...- ....... .+. .-...+.+...-.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c-~~~~~~~---~cg----~C~~c~~~~~~~h 77 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFC-LERNGVE---PCG----TCTNCKRIDSGNH 77 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCC-CCCCCCC---CCC----cCHHHHHHhcCCC
Confidence 3567 77788888888877644566799999999999999999887621 1100000 000 0000111100000
Q ss_pred CC----CCCCCCCCHHHHHHHHHHHh-----ccCceEEEEccccCcc-----ccccccccCCCCcEEEEecCCcc-cccc
Q 003513 150 LC----NDSWKNKSLEEKAHDIFKTL-----SKKKFALLLDDLWERV-----DLKKIGVPLPKNSAVVFTTRFVD-VCGG 214 (814)
Q Consensus 150 ~~----~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~-----~~~~~~~~~~~~~~iiiTtR~~~-~~~~ 214 (814)
.. .........++.. .+.+.+ .+++-++|+|+++... .+.+.....++++.+|++|.+.. +...
T Consensus 78 pD~~~i~~~~~~i~id~ir-~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~T 156 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIR-YLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPT 156 (329)
T ss_pred CCEEEeccccccCCHHHHH-HHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHH
Confidence 00 0000111122222 222222 3456689999987542 23333343445777777776433 2221
Q ss_pred -CCccceEEeccCCHHhHHHHHHHH
Q 003513 215 -MEARRMFKVACLSDEDAWELFREK 238 (814)
Q Consensus 215 -~~~~~~~~l~~L~~~ea~~l~~~~ 238 (814)
......+++.+++.++..+.+.+.
T Consensus 157 IrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 157 ILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HHhhceeeeCCCCCHHHHHHHHHHc
Confidence 233568999999999998888653
No 171
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.73 E-value=4e-05 Score=53.46 Aligned_cols=41 Identities=37% Similarity=0.488 Sum_probs=34.2
Q ss_pred cccCEEEecCCCCcccChhhhcCCCCceeccccccccceeCc
Q 003513 497 VSLQLLDISNTSVTELPEDLKALVNLKCLNLVWAKELVVVPQ 538 (814)
Q Consensus 497 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~ 538 (814)
++|++|++++|+|+.+|..+++|++|+.|++++|+. .+++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i-~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI-SDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC-SBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCC-CCCcC
Confidence 479999999999999998899999999999999965 55554
No 172
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.72 E-value=0.00098 Score=74.94 Aligned_cols=175 Identities=16% Similarity=0.148 Sum_probs=96.8
Q ss_pred CcccchhHHHHHHHHHHh---c--------CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHH
Q 003513 70 PTVVGLQSQLEQVWRCLV---Q--------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLE 138 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~---~--------~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 138 (814)
.+++|.++.++++.+.+. . ....+-+.++|++|+|||++|+.++... ...| +.++. .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~-----~~i~~----~ 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPF-----FSISG----S 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCe-----eeccH----H
Confidence 357898877766655442 1 1234568899999999999999999886 2222 22221 1
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCccc----------------ccccccc---CCC-
Q 003513 139 KIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWERVD----------------LKKIGVP---LPK- 198 (814)
Q Consensus 139 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------------~~~~~~~---~~~- 198 (814)
++.... .+ .........+.......+.+|+|||++.... +..+... +..
T Consensus 123 ~~~~~~---~g--------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 123 DFVEMF---VG--------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred HHHHHH---hc--------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 111111 11 1122223333334445778999999965310 0111111 111
Q ss_pred -CcEEEEecCCccc-----cccCCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCC-ChHHHHHH
Q 003513 199 -NSAVVFTTRFVDV-----CGGMEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRG-LPLALITI 271 (814)
Q Consensus 199 -~~~iiiTtR~~~~-----~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~ 271 (814)
+..||.||..... .+...-+..+.++..+.++-.+++..+........ ......+++.+.| .+-.|..+
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~----~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP----DVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc----chhHHHHHHhCCCCCHHHHHHH
Confidence 4456666654432 12123456789999999999999988765432111 2234578888877 44444433
No 173
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.67 E-value=2.8e-05 Score=89.17 Aligned_cols=129 Identities=22% Similarity=0.262 Sum_probs=79.7
Q ss_pred ccEEEEEcccCCCc--CCC--CCCCCCcccEEEcccCCCccc-cchhhccCCcccEEEccCCccccccCcccccccccCE
Q 003513 427 EMVRRLSLMKNSIE--NLP--TVPTCPHLLTLFLNRNPLRTI-TGGFFQSMSCLTVLKMSDNIMLRQLPMGISKLVSLQL 501 (814)
Q Consensus 427 ~~l~~L~l~~~~~~--~l~--~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 501 (814)
.+|++|++++...- .++ -...+|.|++|.+.+-.+... ......++|+|+.||+|++ +++.+ ..++.|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence 47888888774321 111 124678888888887654222 2233567888888888888 77776 57888888888
Q ss_pred EEecCCCCcccC--hhhhcCCCCceecccccccccee--Ccc---ccCCCcccceeeccccCc
Q 003513 502 LDISNTSVTELP--EDLKALVNLKCLNLVWAKELVVV--PQQ---LLSNFSRLRVLRMFATGF 557 (814)
Q Consensus 502 L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~~--p~~---~i~~l~~L~~L~l~~~~~ 557 (814)
|.+.+-.+..-. ..+-+|++|+.||+|........ ... .-..|++|+.|+.+++..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 887776665322 35667888888888765432211 100 012356666666666554
No 174
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.66 E-value=0.00018 Score=65.93 Aligned_cols=87 Identities=22% Similarity=0.072 Sum_probs=50.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 003513 93 GIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLS 172 (814)
Q Consensus 93 ~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 172 (814)
..+.|+|++|+||||+|+.++... ......++++..+........... ....... ............+.+..+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL---GPPGGGVIYIDGEDILEEVLDQLL-LIIVGGK---KASGSGELRLRLALALAR 75 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc---CCCCCCEEEECCEEccccCHHHHH-hhhhhcc---CCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999988 232234666655443322222111 0001100 122233333445555554
Q ss_pred cC-ceEEEEccccCc
Q 003513 173 KK-KFALLLDDLWER 186 (814)
Q Consensus 173 ~~-~~LlVlDdv~~~ 186 (814)
.. ..++++|+++..
T Consensus 76 ~~~~~viiiDei~~~ 90 (148)
T smart00382 76 KLKPDVLILDEITSL 90 (148)
T ss_pred hcCCCEEEEECCccc
Confidence 44 499999999866
No 175
>CHL00176 ftsH cell division protein; Validated
Probab=97.64 E-value=0.00068 Score=77.26 Aligned_cols=167 Identities=16% Similarity=0.182 Sum_probs=95.3
Q ss_pred CcccchhHHHHHHHHHH---hcC--------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHH
Q 003513 70 PTVVGLQSQLEQVWRCL---VQE--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLE 138 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L---~~~--------~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 138 (814)
.++.|.++.++++.+.+ ... ...+-|.++|++|+|||++|++++... ... |+.++. .
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~----s 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISG----S 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccH----H
Confidence 45788887666665543 321 124568999999999999999999876 222 222221 1
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCcc----------------cccccccc---CC--
Q 003513 139 KIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWERV----------------DLKKIGVP---LP-- 197 (814)
Q Consensus 139 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~~~~~---~~-- 197 (814)
++.... .+ .........+.+..+..+.+|+|||++... .+..+... +.
T Consensus 251 ~f~~~~---~g--------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 251 EFVEMF---VG--------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred HHHHHh---hh--------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 111110 01 011222233444445688999999996431 11122111 11
Q ss_pred CCcEEEEecCCcccc-----ccCCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCC
Q 003513 198 KNSAVVFTTRFVDVC-----GGMEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRG 263 (814)
Q Consensus 198 ~~~~iiiTtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 263 (814)
.+..||.||...... +.-.-+..+.++..+.++-.++++.++...... .......+++.+.|
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~----~d~~l~~lA~~t~G 386 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS----PDVSLELIARRTPG 386 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc----hhHHHHHHHhcCCC
Confidence 245666666654332 111234678999999999999998887543211 13345677888777
No 176
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.63 E-value=0.00081 Score=62.94 Aligned_cols=135 Identities=16% Similarity=0.146 Sum_probs=72.0
Q ss_pred chhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCC-----------------CCeEEEEEECCc--
Q 003513 74 GLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKD-----------------FDYVIWVVVSKD-- 134 (814)
Q Consensus 74 Gr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~-----------------f~~~~wv~~~~~-- 134 (814)
|-++..+.+.+.+..+.-...+.++|+.|+||+++|..+++........ ..-+.|+.....
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 5677788888888777345578999999999999999998886321111 122333322211
Q ss_pred -cCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCc--c---ccccccccCCCCcEEEEecCC
Q 003513 135 -LQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWER--V---DLKKIGVPLPKNSAVVFTTRF 208 (814)
Q Consensus 135 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~---~~~~~~~~~~~~~~iiiTtR~ 208 (814)
..++++. .+...+.... ..+++-++||||++.. . .+.+.....+.++.+|++|++
T Consensus 81 ~i~i~~ir-~i~~~~~~~~------------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSP------------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred hhhHHHHH-HHHHHHHHHH------------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 2222222 2222222111 0245679999999865 2 233333444568999988886
Q ss_pred ccc-cc-cCCccceEEeccCC
Q 003513 209 VDV-CG-GMEARRMFKVACLS 227 (814)
Q Consensus 209 ~~~-~~-~~~~~~~~~l~~L~ 227 (814)
..- .. ...-...+.+.+++
T Consensus 142 ~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 142 PSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GGGS-HHHHTTSEEEEE----
T ss_pred hHHChHHHHhhceEEecCCCC
Confidence 653 11 11223456666553
No 177
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.61 E-value=0.0041 Score=65.67 Aligned_cols=200 Identities=17% Similarity=0.212 Sum_probs=123.9
Q ss_pred hhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHH-HHHHhhhccCCCCCCeEEEEEECCc---cCHHHHHHHHHHHhCC
Q 003513 75 LQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLL-TQINNKFVDNPKDFDYVIWVVVSKD---LQLEKIQETIGKKIGL 150 (814)
Q Consensus 75 r~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa-~~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~ 150 (814)
|.+.+++|..||.+. .-.+|.|.||-|+||+.|+ .++..+. +.+..++|.+- .+-..+.+.++.++|-
T Consensus 1 R~e~~~~L~~wL~e~-~~TFIvV~GPrGSGK~elV~d~~L~~r-------~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY 72 (431)
T PF10443_consen 1 RKEAIEQLKSWLNEN-PNTFIVVQGPRGSGKRELVMDHVLKDR-------KNVLVIDCDQIVKARGDAAFIKNLASQVGY 72 (431)
T ss_pred CchHHHHHHHHHhcC-CCeEEEEECCCCCCccHHHHHHHHhCC-------CCEEEEEChHhhhccChHHHHHHHHHhcCC
Confidence 667899999999987 5579999999999999999 7776664 22777776432 2334445555555431
Q ss_pred CC----------------------CCCCCCCHHHHHHHHHHH----hc--------------------------cCceEE
Q 003513 151 CN----------------------DSWKNKSLEEKAHDIFKT----LS--------------------------KKKFAL 178 (814)
Q Consensus 151 ~~----------------------~~~~~~~~~~~~~~l~~~----l~--------------------------~~~~Ll 178 (814)
-. ...-..+.+.....+.+. |+ .++-+|
T Consensus 73 ~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVV 152 (431)
T PF10443_consen 73 FPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVV 152 (431)
T ss_pred CcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEE
Confidence 11 011122333332222111 11 125689
Q ss_pred EEccccCccc--------cccccccC--CCCcEEEEecCCcccccc----C--CccceEEeccCCHHhHHHHHHHHhccc
Q 003513 179 LLDDLWERVD--------LKKIGVPL--PKNSAVVFTTRFVDVCGG----M--EARRMFKVACLSDEDAWELFREKVGEE 242 (814)
Q Consensus 179 VlDdv~~~~~--------~~~~~~~~--~~~~~iiiTtR~~~~~~~----~--~~~~~~~l~~L~~~ea~~l~~~~~~~~ 242 (814)
||||...... +.++...+ ..-.+||++|-+...... + ...+.+.|...+.+.|.++...+....
T Consensus 153 VIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 153 VIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred EEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccc
Confidence 9999853311 11111111 124678888876654322 2 244678999999999999999987643
Q ss_pred ccc-------------C----CCChHHHHHHHHHHcCCChHHHHHHHHHhccCCCHH
Q 003513 243 TIE-------------S----HHSLPELAQTVAKECRGLPLALITIGRAMAYKKTPE 282 (814)
Q Consensus 243 ~~~-------------~----~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~ 282 (814)
... . ...........++.+||-=.-+..+++.++...++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 233 TEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 100 0 012445567788999999999999999998765543
No 178
>PRK08116 hypothetical protein; Validated
Probab=97.61 E-value=0.00013 Score=74.32 Aligned_cols=98 Identities=26% Similarity=0.311 Sum_probs=57.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 003513 93 GIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLS 172 (814)
Q Consensus 93 ~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 172 (814)
..+.|+|..|+|||+||.++++... .....+++++ ..+++..+........ ..+ ...+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~---~~~~~v~~~~------~~~ll~~i~~~~~~~~----~~~----~~~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI---EKGVPVIFVN------FPQLLNRIKSTYKSSG----KED----ENEIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEE------HHHHHHHHHHHHhccc----ccc----HHHHHHHhc
Confidence 4689999999999999999999983 2234566664 3445555554433211 111 222334444
Q ss_pred cCceEEEEccccC--ccccc--c---cccc-CCCCcEEEEecCC
Q 003513 173 KKKFALLLDDLWE--RVDLK--K---IGVP-LPKNSAVVFTTRF 208 (814)
Q Consensus 173 ~~~~LlVlDdv~~--~~~~~--~---~~~~-~~~~~~iiiTtR~ 208 (814)
+-. ||||||+.. ..+|. . +... ...+..+||||..
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 444 899999942 22221 1 1111 1236779999873
No 179
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0002 Score=78.94 Aligned_cols=150 Identities=19% Similarity=0.269 Sum_probs=90.1
Q ss_pred CCcccchhHHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHH---
Q 003513 69 EPTVVGLQSQLEQVWRCLVQ-----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKI--- 140 (814)
Q Consensus 69 ~~~~vGr~~~~~~l~~~L~~-----~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~--- 140 (814)
+.+.+|.++.+++|++.|.- .-.-++++++||+|+|||.|++.++... ...|-. +.++.-.|..++
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~RkfvR---~sLGGvrDEAEIRGH 395 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKFVR---ISLGGVRDEAEIRGH 395 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCEEE---EecCccccHHHhccc
Confidence 34579999999999998852 2234799999999999999999999998 555522 223222222222
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh---ccCceEEEEccccCc---------ccccccccc-----CCC-----
Q 003513 141 QETIGKKIGLCNDSWKNKSLEEKAHDIFKTL---SKKKFALLLDDLWER---------VDLKKIGVP-----LPK----- 198 (814)
Q Consensus 141 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~---------~~~~~~~~~-----~~~----- 198 (814)
.+.-..+ .--++.+.+ +.+.-|++||.++.. ..+-.++.| |.+
T Consensus 396 RRTYIGa---------------mPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev 460 (782)
T COG0466 396 RRTYIGA---------------MPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEV 460 (782)
T ss_pred ccccccc---------------CChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccC
Confidence 1111111 111333333 346779999998743 111111121 111
Q ss_pred ---CcEEE--EecCCcc-c-cccCCccceEEeccCCHHhHHHHHHHHh
Q 003513 199 ---NSAVV--FTTRFVD-V-CGGMEARRMFKVACLSDEDAWELFREKV 239 (814)
Q Consensus 199 ---~~~ii--iTtR~~~-~-~~~~~~~~~~~l~~L~~~ea~~l~~~~~ 239 (814)
=|.|+ .|..+-+ + ...++.-+++++.+.+++|-.++-+++.
T Consensus 461 ~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 461 PYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred ccchhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 23333 3443333 2 2334455789999999999999888775
No 180
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0019 Score=65.58 Aligned_cols=176 Identities=18% Similarity=0.236 Sum_probs=104.5
Q ss_pred ccchhHHHHHHHHHHhc-----------C-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHH
Q 003513 72 VVGLQSQLEQVWRCLVQ-----------E-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEK 139 (814)
Q Consensus 72 ~vGr~~~~~~l~~~L~~-----------~-~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 139 (814)
+=|-++.+++|.+...- + ...+=|.++|++|.|||-||++|++.- ... |+.+... +-
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~At-----FIrvvgS---El 221 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DAT-----FIRVVGS---EL 221 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---Cce-----EEEeccH---HH
Confidence 34678888888877531 1 356778999999999999999999987 333 3443322 22
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcc-CceEEEEccccCcc------------c----cccc---cccCCC-
Q 003513 140 IQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLSK-KKFALLLDDLWERV------------D----LKKI---GVPLPK- 198 (814)
Q Consensus 140 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~~------------~----~~~~---~~~~~~- 198 (814)
+++-|. +-..++..+.+.-+. .+.+|.+|.++... . +.++ ...|.+
T Consensus 222 VqKYiG-------------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 222 VQKYIG-------------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred HHHHhc-------------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 333222 123445555555554 68899999987431 0 1111 112222
Q ss_pred -CcEEEEecCCcccc-----ccCCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCCh----HHH
Q 003513 199 -NSAVVFTTRFVDVC-----GGMEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLP----LAL 268 (814)
Q Consensus 199 -~~~iiiTtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P----lal 268 (814)
+.|||.+|....+. +.-.-+..++++.-+.+.-.++|+-++.......+-+++ .+++.+.|.- .|+
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sGAdlkai 364 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSGADLKAI 364 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCchHHHHHH
Confidence 78999888765553 222345678888666666667777777655544443444 4555665544 344
Q ss_pred HHHHHHh
Q 003513 269 ITIGRAM 275 (814)
Q Consensus 269 ~~~~~~l 275 (814)
.+=|+++
T Consensus 365 ctEAGm~ 371 (406)
T COG1222 365 CTEAGMF 371 (406)
T ss_pred HHHHhHH
Confidence 4444444
No 181
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.57 E-value=0.0001 Score=77.81 Aligned_cols=79 Identities=23% Similarity=0.344 Sum_probs=43.8
Q ss_pred CcccEEEEEcccCCCcCCCCCCCCCcccEEEcccCC-CccccchhhccCCcccEEEccCCccccccCcccccccccCEEE
Q 003513 425 GWEMVRRLSLMKNSIENLPTVPTCPHLLTLFLNRNP-LRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGISKLVSLQLLD 503 (814)
Q Consensus 425 ~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 503 (814)
.|.++++|++++|.+..+|.+ .++|++|.+++|. ++.+|.. + .++|++|++++|..+..+|. +|+.|+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPE------SVRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCccccccccc------ccceEE
Confidence 345666777777766666632 2357777776654 4343332 2 24667777777655555653 345555
Q ss_pred ecCCC---CcccCh
Q 003513 504 ISNTS---VTELPE 514 (814)
Q Consensus 504 l~~~~---l~~lp~ 514 (814)
++.+. +..+|.
T Consensus 119 L~~n~~~~L~~LPs 132 (426)
T PRK15386 119 IKGSATDSIKNVPN 132 (426)
T ss_pred eCCCCCcccccCcc
Confidence 55443 334554
No 182
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.56 E-value=1.4e-05 Score=90.62 Aligned_cols=66 Identities=20% Similarity=0.057 Sum_probs=29.2
Q ss_pred cCCCCceeccccccccceeCc-cccCCCcccceeeccccCcccchhhhchHHHHcCCCCccEEEEEecCh
Q 003513 518 ALVNLKCLNLVWAKELVVVPQ-QLLSNFSRLRVLRMFATGFLLSSWHENVAEELLGLKYLEVLEISFRSF 586 (814)
Q Consensus 518 ~l~~L~~L~l~~~~~l~~~p~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 586 (814)
.+.+|+.|++++|..+.+.-- .+...+++|++|.+..|..+ ....+......+++|++|+++++..
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~l---t~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNL---TDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCcc---chhHHHHHHHhcCcccEEeeecCcc
Confidence 345555555555543222221 11122555666655444421 1223333334455566666655443
No 183
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.53 E-value=0.005 Score=64.08 Aligned_cols=174 Identities=10% Similarity=0.042 Sum_probs=94.3
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhC-----CCC
Q 003513 78 QLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIG-----LCN 152 (814)
Q Consensus 78 ~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-----~~~ 152 (814)
..+.+.+.+..+.-...+.++|+.|+||+++|..++....-. ..... ...+.-...+.+...-. +..
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~-~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQ-TPQGD-------QPCGQCHSCHLFQAGNHPDFHILEP 81 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCC-CCCCC-------CCCCCCHHHHHHhcCCCCCEEEEcc
Confidence 455666666666345677799999999999999998876211 10000 00000011111110000 000
Q ss_pred CCCCCCCHHHHHHHHHHHh-----ccCceEEEEccccCcc-----ccccccccCCCCcEEEEecCCc-ccccc-CCccce
Q 003513 153 DSWKNKSLEEKAHDIFKTL-----SKKKFALLLDDLWERV-----DLKKIGVPLPKNSAVVFTTRFV-DVCGG-MEARRM 220 (814)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~-----~~~~~~~~~~~~~~iiiTtR~~-~~~~~-~~~~~~ 220 (814)
.....-.+++ +..+.+.+ .+++-++|+|+++... .+-+...--+++..+|++|.+. .+... ......
T Consensus 82 ~~~~~I~id~-iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~ 160 (325)
T PRK06871 82 IDNKDIGVDQ-VREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQT 160 (325)
T ss_pred ccCCCCCHHH-HHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceE
Confidence 0001112222 22233333 3566788999997542 2223333334466777666644 33322 223568
Q ss_pred EEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHH
Q 003513 221 FKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLAL 268 (814)
Q Consensus 221 ~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 268 (814)
+.+.+++++++.+.+.+..... ...+...+..++|.|+.+
T Consensus 161 ~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLA 200 (325)
T ss_pred EeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHH
Confidence 9999999999999988764221 223567788999999644
No 184
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0021 Score=69.56 Aligned_cols=167 Identities=16% Similarity=0.170 Sum_probs=96.2
Q ss_pred cccchhHHHHHHHHHHhc----------C-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHH
Q 003513 71 TVVGLQSQLEQVWRCLVQ----------E-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEK 139 (814)
Q Consensus 71 ~~vGr~~~~~~l~~~L~~----------~-~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 139 (814)
++=|.++.+.++.+.+.. + ...+-|.+||++|.|||.||++++... . +-|+.++.+
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel---~-----vPf~~isAp----- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL---G-----VPFLSISAP----- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc---C-----CceEeecch-----
Confidence 456788888888776642 1 245678899999999999999999998 2 223444332
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCcc----------------c----ccccccc--CC
Q 003513 140 IQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWERV----------------D----LKKIGVP--LP 197 (814)
Q Consensus 140 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~----~~~~~~~--~~ 197 (814)
.|.... ...+++...+.+.+.-+.-+++++||+++... + ++.+... .+
T Consensus 258 ---eivSGv-------SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g 327 (802)
T KOG0733|consen 258 ---EIVSGV-------SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKG 327 (802)
T ss_pred ---hhhccc-------CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCC
Confidence 222222 12234444445555566789999999997541 1 1111111 11
Q ss_pred CCcEEEE-ecCCccccc---cC-CccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCC
Q 003513 198 KNSAVVF-TTRFVDVCG---GM-EARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGL 264 (814)
Q Consensus 198 ~~~~iii-TtR~~~~~~---~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 264 (814)
.+..||- |+|...+-. +. .-+..|.+..-++..-.++++..+.+-....+-++ ++|++..-|.
T Consensus 328 ~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~----~qlA~lTPGf 395 (802)
T KOG0733|consen 328 DPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDF----KQLAKLTPGF 395 (802)
T ss_pred CCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCH----HHHHhcCCCc
Confidence 2333333 455444321 11 23457888888887777777777654443333333 4455555554
No 185
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.50 E-value=0.00026 Score=67.95 Aligned_cols=128 Identities=16% Similarity=0.189 Sum_probs=66.4
Q ss_pred chhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCc--cC-----------HHHH
Q 003513 74 GLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKD--LQ-----------LEKI 140 (814)
Q Consensus 74 Gr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~--~~-----------~~~~ 140 (814)
.+..+-...++.|.+ ..++.+.|++|.|||.||.+.+-+... .+.|+.++++.-.-. .+ ..-.
T Consensus 4 p~~~~Q~~~~~al~~---~~~v~~~G~AGTGKT~LA~a~Al~~v~-~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 4 PKNEEQKFALDALLN---NDLVIVNGPAGTGKTFLALAAALELVK-EGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp --SHHHHHHHHHHHH----SEEEEE--TTSSTTHHHHHHHHHHHH-TTS-SEEEEEE-S--TT----SS---------TT
T ss_pred CCCHHHHHHHHHHHh---CCeEEEECCCCCcHHHHHHHHHHHHHH-hCCCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence 345555666666663 379999999999999999998876633 478888888753211 00 1111
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHH------HHHHhccC---ceEEEEccccCc--cccccccccCCCCcEEEEecCC
Q 003513 141 QETIGKKIGLCNDSWKNKSLEEKAHD------IFKTLSKK---KFALLLDDLWER--VDLKKIGVPLPKNSAVVFTTRF 208 (814)
Q Consensus 141 ~~~i~~~l~~~~~~~~~~~~~~~~~~------l~~~l~~~---~~LlVlDdv~~~--~~~~~~~~~~~~~~~iiiTtR~ 208 (814)
...+.+.+..-. .....+..... -..+++|+ ...+|+|++.+. .++..+.-..+.+|+||++--.
T Consensus 80 ~~p~~d~l~~~~---~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 80 LRPIYDALEELF---GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp THHHHHHHTTTS----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE--
T ss_pred HHHHHHHHHHHh---ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcccCCCcEEEEecCc
Confidence 222222222110 11122222211 01223443 569999999875 5777777778889999998653
No 186
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.49 E-value=0.0004 Score=65.67 Aligned_cols=73 Identities=16% Similarity=0.214 Sum_probs=52.5
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHH
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETI 144 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 144 (814)
.++||-++.++.+.-.-.++ +++-+.|.||+|+||||=+..+++... ....-+++.-+..|+...++-+...|
T Consensus 27 ~dIVGNe~tv~rl~via~~g-nmP~liisGpPG~GKTTsi~~LAr~LL-G~~~ke~vLELNASdeRGIDvVRn~I 99 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEG-NMPNLIISGPPGTGKTTSILCLARELL-GDSYKEAVLELNASDERGIDVVRNKI 99 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcC-CCCceEeeCCCCCchhhHHHHHHHHHh-ChhhhhHhhhccCccccccHHHHHHH
Confidence 46899999999887665555 899999999999999999999999872 22233455555555555544444433
No 187
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.48 E-value=0.004 Score=65.49 Aligned_cols=177 Identities=11% Similarity=0.071 Sum_probs=96.1
Q ss_pred HHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCC---CCeEE----EEEECCccCHHHHHHHHHHHhC
Q 003513 77 SQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKD---FDYVI----WVVVSKDLQLEKIQETIGKKIG 149 (814)
Q Consensus 77 ~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~---f~~~~----wv~~~~~~~~~~~~~~i~~~l~ 149 (814)
..-+++.+.+..+.-...+.++|+.|+||+++|..++....-.... -.+.+ ++.....+|+..+.-
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p------- 81 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTP------- 81 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec-------
Confidence 3456677777776456688899999999999999998876211000 00000 000111111110000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHh-----ccCceEEEEccccCcc--c---cccccccCCCCcEEEEecCCc-ccccc-CCc
Q 003513 150 LCNDSWKNKSLEEKAHDIFKTL-----SKKKFALLLDDLWERV--D---LKKIGVPLPKNSAVVFTTRFV-DVCGG-MEA 217 (814)
Q Consensus 150 ~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~---~~~~~~~~~~~~~iiiTtR~~-~~~~~-~~~ 217 (814)
......-.+++. ..+.+.+ .+++-++|+|+++... . +-+...--++++.+|.+|.+. .+... ..-
T Consensus 82 --~~~~~~I~idqi-R~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSR 158 (334)
T PRK07993 82 --EKGKSSLGVDAV-REVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSR 158 (334)
T ss_pred --ccccccCCHHHH-HHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc
Confidence 000001122222 2233333 3567799999987541 1 222223334466666666543 34322 223
Q ss_pred cceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHH
Q 003513 218 RRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITI 271 (814)
Q Consensus 218 ~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 271 (814)
...+.+.+++.+++.+.+.+..+. + .+.+..++..++|.|..+..+
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~~~-----~---~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 159 CRLHYLAPPPEQYALTWLSREVTM-----S---QDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred cccccCCCCCHHHHHHHHHHccCC-----C---HHHHHHHHHHcCCCHHHHHHH
Confidence 457899999999999888654321 1 344778899999999754433
No 188
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.47 E-value=0.00077 Score=76.24 Aligned_cols=48 Identities=19% Similarity=0.314 Sum_probs=40.3
Q ss_pred CCcccchhHHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 69 EPTVVGLQSQLEQVWRCLVQE----PAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 69 ~~~~vGr~~~~~~l~~~L~~~----~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
..+++|.++.++++..++... ...+++.|+|++|+||||+++.++...
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 346899999999999998652 234679999999999999999999876
No 189
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.46 E-value=0.00077 Score=70.40 Aligned_cols=107 Identities=15% Similarity=0.119 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCe-EEEEEECC-ccCHHHHHHHHHHHhCCCCCCC
Q 003513 78 QLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDY-VIWVVVSK-DLQLEKIQETIGKKIGLCNDSW 155 (814)
Q Consensus 78 ~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~-~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~ 155 (814)
...++++.+..-+.-..+.|+|..|+|||||++.+++... .++-+. ++|+.+.+ ..++.++.+.+...+.....+.
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCC
Confidence 3345777776522335679999999999999999999872 223333 35655554 4578899999888766533111
Q ss_pred CCCC---HHHHHHHHHHHh--ccCceEEEEccccCc
Q 003513 156 KNKS---LEEKAHDIFKTL--SKKKFALLLDDLWER 186 (814)
Q Consensus 156 ~~~~---~~~~~~~l~~~l--~~~~~LlVlDdv~~~ 186 (814)
.... ....+..+.+++ ++++++||+|++...
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 1111 111122233333 579999999998644
No 190
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.0051 Score=63.87 Aligned_cols=175 Identities=11% Similarity=0.024 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhC-----CC
Q 003513 77 SQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIG-----LC 151 (814)
Q Consensus 77 ~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-----~~ 151 (814)
...+++.+.+..+.-...+.++|+.|+||+++|..++....-...... .+.. -...+.+...-. +.
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~-----~Cg~----C~sC~~~~~g~HPD~~~i~ 80 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSE-----ACGF----CHSCELMQSGNHPDLHVIK 80 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCC-----CCCC----CHHHHHHHcCCCCCEEEEe
Confidence 345666666666644568899999999999999999887621110000 0000 000111100000 00
Q ss_pred CC-CCCCCCHHHHHHHHHHHh-----ccCceEEEEccccCcc--c---cccccccCCCCcEEEEecCCc-ccccc-CCcc
Q 003513 152 ND-SWKNKSLEEKAHDIFKTL-----SKKKFALLLDDLWERV--D---LKKIGVPLPKNSAVVFTTRFV-DVCGG-MEAR 218 (814)
Q Consensus 152 ~~-~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~---~~~~~~~~~~~~~iiiTtR~~-~~~~~-~~~~ 218 (814)
.+ ....-.+++. ..+.+.+ .+++-++|+|+++... . +-+...--++++.+|++|.+. .+... ....
T Consensus 81 p~~~~~~I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRC 159 (319)
T PRK06090 81 PEKEGKSITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRC 159 (319)
T ss_pred cCcCCCcCCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc
Confidence 00 0011122222 2233333 2456689999987542 1 222223334466666655543 34322 2345
Q ss_pred ceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHH
Q 003513 219 RMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIG 272 (814)
Q Consensus 219 ~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 272 (814)
..+.+.+++.+++.+.+.+.. .+ .+..++..++|.|+.+..+.
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~------~~-----~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 160 QQWVVTPPSTAQAMQWLKGQG------IT-----VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred eeEeCCCCCHHHHHHHHHHcC------Cc-----hHHHHHHHcCCCHHHHHHHh
Confidence 689999999999999886531 11 23567899999999776553
No 191
>PRK08118 topology modulation protein; Reviewed
Probab=97.42 E-value=0.00038 Score=65.52 Aligned_cols=36 Identities=36% Similarity=0.549 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEE
Q 003513 93 GIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIW 128 (814)
Q Consensus 93 ~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~w 128 (814)
+.|.|+|++|+||||||+.+++...-...+|+..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 468999999999999999999987222356777776
No 192
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.40 E-value=0.00034 Score=64.99 Aligned_cols=81 Identities=23% Similarity=0.377 Sum_probs=37.8
Q ss_pred EEEEEcccCCCcCCCCCCCCCcccEEEcccCCCccccchhhccCCcccEEEccCCccccccCc--ccccccccCEEEecC
Q 003513 429 VRRLSLMKNSIENLPTVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPM--GISKLVSLQLLDISN 506 (814)
Q Consensus 429 l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~--~i~~l~~L~~L~l~~ 506 (814)
...++|++|.+..++.+..++.|.+|.+.+|.++.+.+..-..+++|..|.|.+| .+.++.+ -+..|+.|++|.+-+
T Consensus 44 ~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred cceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeecC
Confidence 3345555555555555555555555555555555554443334444555555555 3333211 123344444444444
Q ss_pred CCCc
Q 003513 507 TSVT 510 (814)
Q Consensus 507 ~~l~ 510 (814)
|.++
T Consensus 123 Npv~ 126 (233)
T KOG1644|consen 123 NPVE 126 (233)
T ss_pred Cchh
Confidence 4433
No 193
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.38 E-value=0.00032 Score=63.40 Aligned_cols=22 Identities=41% Similarity=0.469 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 003513 95 IGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 95 i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
|.|+|++|+||||+|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999998
No 194
>PRK12377 putative replication protein; Provisional
Probab=97.37 E-value=0.00072 Score=67.59 Aligned_cols=73 Identities=25% Similarity=0.272 Sum_probs=45.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTL 171 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 171 (814)
...+.++|..|+|||+||.++++... .....++++++ .++...+-..... ..... .+.+.+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~------~~l~~~l~~~~~~------~~~~~----~~l~~l 161 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTV------PDVMSRLHESYDN------GQSGE----KFLQEL 161 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEH------HHHHHHHHHHHhc------cchHH----HHHHHh
Confidence 46799999999999999999999983 33344666654 3444444433211 11111 122222
Q ss_pred ccCceEEEEcccc
Q 003513 172 SKKKFALLLDDLW 184 (814)
Q Consensus 172 ~~~~~LlVlDdv~ 184 (814)
.+-=||||||+.
T Consensus 162 -~~~dLLiIDDlg 173 (248)
T PRK12377 162 -CKVDLLVLDEIG 173 (248)
T ss_pred -cCCCEEEEcCCC
Confidence 355699999994
No 195
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.36 E-value=0.0017 Score=71.04 Aligned_cols=187 Identities=14% Similarity=0.142 Sum_probs=110.9
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhC
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIG 149 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 149 (814)
.++||.+.....|...+..+.-.......|+-|+||||+|+.++... .-... ........-...+.|...-.
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~Akal-NC~~~-------~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKAL-NCENG-------PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHh-cCCCC-------CCCCcchhhhhhHhhhcCCc
Confidence 46799999999999999887455677899999999999999998876 21110 00111111122223322200
Q ss_pred CCC---CCCCCCCHHHHHHHHHHHh-----ccCceEEEEccccCc--ccccccccc---CCCCcEEEEecCCcc-c-ccc
Q 003513 150 LCN---DSWKNKSLEEKAHDIFKTL-----SKKKFALLLDDLWER--VDLKKIGVP---LPKNSAVVFTTRFVD-V-CGG 214 (814)
Q Consensus 150 ~~~---~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~~~~~---~~~~~~iiiTtR~~~-~-~~~ 214 (814)
+.. +......+++ ++.|.+.. +++.=+.|+|.|.-. ..+.++... -|.+..+|++|++.. + ...
T Consensus 88 ~DviEiDaASn~gVdd-iR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TI 166 (515)
T COG2812 88 IDVIEIDAASNTGVDD-IREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTI 166 (515)
T ss_pred ccchhhhhhhccChHH-HHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhh
Confidence 000 0001112222 22233332 345568999999754 333333222 234666666666443 3 222
Q ss_pred CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHH
Q 003513 215 MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLAL 268 (814)
Q Consensus 215 ~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 268 (814)
....+.|.++.++.++-...+...+....+..+ ++...-|++..+|...-.
T Consensus 167 lSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e---~~aL~~ia~~a~Gs~RDa 217 (515)
T COG2812 167 LSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE---EDALSLIARAAEGSLRDA 217 (515)
T ss_pred hhccccccccCCCHHHHHHHHHHHHHhcCCccC---HHHHHHHHHHcCCChhhH
Confidence 345678999999999999999988876654333 666777888887766543
No 196
>PRK08181 transposase; Validated
Probab=97.29 E-value=0.0011 Score=67.08 Aligned_cols=95 Identities=20% Similarity=0.181 Sum_probs=53.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 003513 93 GIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLS 172 (814)
Q Consensus 93 ~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 172 (814)
..+.++|++|+|||.||.++++... .....++|+. ..++...+..... ....... .+.+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~------~~~L~~~l~~a~~-------~~~~~~~----l~~l~ 166 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTR------TTDLVQKLQVARR-------ELQLESA----IAKLD 166 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeee------HHHHHHHHHHHHh-------CCcHHHH----HHHHh
Confidence 5589999999999999999999872 2233456664 3455555543321 1122222 22222
Q ss_pred cCceEEEEccccCcc-------ccccccccCCCCcEEEEecCC
Q 003513 173 KKKFALLLDDLWERV-------DLKKIGVPLPKNSAVVFTTRF 208 (814)
Q Consensus 173 ~~~~LlVlDdv~~~~-------~~~~~~~~~~~~~~iiiTtR~ 208 (814)
+.=||||||+.... .+-.+....-.+..+||||..
T Consensus 167 -~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 167 -KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred -cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 34599999985321 111111111114568888884
No 197
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.29 E-value=0.00016 Score=83.07 Aligned_cols=135 Identities=21% Similarity=0.137 Sum_probs=65.8
Q ss_pred CcccEEEcccCC--CccccchhhccCCcccEEEccCCccc-cccCcccccccccCEEEecCCCCcccChhhhcCCCCcee
Q 003513 449 PHLLTLFLNRNP--LRTITGGFFQSMSCLTVLKMSDNIML-RQLPMGISKLVSLQLLDISNTSVTELPEDLKALVNLKCL 525 (814)
Q Consensus 449 ~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~L~~~~~~-~~lp~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 525 (814)
.+|+.|++++.. ..+.+...-..+|.|+.|.+++-... .++..-..++++|..||+|+|+++.+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 456666666654 22233333334666666666664111 12222334566666666666666666 566666666666
Q ss_pred ccccccccceeC-ccccCCCcccceeeccccCcccch-hhhchHHHHcCCCCccEEEEEecC
Q 003513 526 NLVWAKELVVVP-QQLLSNFSRLRVLRMFATGFLLSS-WHENVAEELLGLKYLEVLEISFRS 585 (814)
Q Consensus 526 ~l~~~~~l~~~p-~~~i~~l~~L~~L~l~~~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~ 585 (814)
.+.+-....... .. +-+|++|+.|+++........ ......+.-..|++|+.|+.+++.
T Consensus 201 ~mrnLe~e~~~~l~~-LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 201 SMRNLEFESYQDLID-LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred hccCCCCCchhhHHH-HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 665533211000 11 345666666666654432111 111122222335556666555444
No 198
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.27 E-value=0.00065 Score=66.81 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=31.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEEC
Q 003513 93 GIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVS 132 (814)
Q Consensus 93 ~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 132 (814)
-.++|+|..|+||||++..+.... ...|..+++++-.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~~ 50 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITPE 50 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEecC
Confidence 367899999999999999999887 7788888777543
No 199
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.27 E-value=0.0067 Score=61.93 Aligned_cols=55 Identities=24% Similarity=0.272 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHH
Q 003513 77 SQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKI 140 (814)
Q Consensus 77 ~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 140 (814)
+.++++..++..+ ..|.|.|++|+|||++|+.++... .. ..+++++....+..++
T Consensus 9 ~l~~~~l~~l~~g---~~vLL~G~~GtGKT~lA~~la~~l---g~---~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 9 RVTSRALRYLKSG---YPVHLRGPAGTGKTTLAMHVARKR---DR---PVMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHHhcC---CeEEEEcCCCCCHHHHHHHHHHHh---CC---CEEEEeCCccCCHHHH
Confidence 3445555555544 466799999999999999999855 22 2455566555544444
No 200
>PRK04296 thymidine kinase; Provisional
Probab=97.25 E-value=0.00037 Score=67.23 Aligned_cols=113 Identities=16% Similarity=0.050 Sum_probs=65.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 003513 93 GIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLS 172 (814)
Q Consensus 93 ~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 172 (814)
.++.|+|+.|.||||+|..++.+. ......++.+. ..++.......++++++............+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~---~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY---EERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH---HHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 578899999999999999999887 23333444442 1112222233456666643322112334444444444 33
Q ss_pred cCceEEEEccccCc--ccccccccc-CCCCcEEEEecCCccc
Q 003513 173 KKKFALLLDDLWER--VDLKKIGVP-LPKNSAVVFTTRFVDV 211 (814)
Q Consensus 173 ~~~~LlVlDdv~~~--~~~~~~~~~-~~~~~~iiiTtR~~~~ 211 (814)
++.-+||+|.+.-. +++.++... -+.|..||+|.++...
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 35568999998643 323333232 2348899999987543
No 201
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.18 E-value=0.011 Score=65.32 Aligned_cols=196 Identities=15% Similarity=0.121 Sum_probs=120.3
Q ss_pred CcccchhHHHHHHHHHHhc---C-CCceEEEEEcCCCCcHHHHHHHHHhhhcc-----CCCCCCeEEEEEECCccCHHHH
Q 003513 70 PTVVGLQSQLEQVWRCLVQ---E-PAAGIIGLYGMGGVGKTTLLTQINNKFVD-----NPKDFDYVIWVVVSKDLQLEKI 140 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~---~-~~~~~i~i~G~gGiGKTtLa~~~~~~~~~-----~~~~f~~~~wv~~~~~~~~~~~ 140 (814)
..+-+|+.+..+|.+.+.. + +..+.+.|.|-+|.|||..+..|.+.... .-..|+ .+.|+.-.-....++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 4567999999999888754 2 34569999999999999999999986521 123454 345555455568999
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc-----cCceEEEEccccCc-----cccccccc-cCCCCcEEEEecC--
Q 003513 141 QETIGKKIGLCNDSWKNKSLEEKAHDIFKTLS-----KKKFALLLDDLWER-----VDLKKIGV-PLPKNSAVVFTTR-- 207 (814)
Q Consensus 141 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~-----~~~~~~~~-~~~~~~~iiiTtR-- 207 (814)
+..|..++... ...+......+..+.. .+..++++|+++.. +.+..+.. |.-.+++++|-+=
T Consensus 475 Y~~I~~~lsg~-----~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 475 YEKIWEALSGE-----RVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHhcccC-----cccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 99999998763 4456666666666653 35688999998643 12222211 2223676655432
Q ss_pred Ccc---------ccccCCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHH
Q 003513 208 FVD---------VCGGMEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIG 272 (814)
Q Consensus 208 ~~~---------~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 272 (814)
... +..++ ....+...+.+.++-.+++..+..+...-.....+=+++.|+...|-.-.|+.+.-
T Consensus 550 TmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~ 622 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICR 622 (767)
T ss_pred cccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHH
Confidence 111 11122 12357778888888888888776544211222233344555555554444444433
No 202
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.17 E-value=0.0067 Score=71.81 Aligned_cols=167 Identities=17% Similarity=0.210 Sum_probs=94.4
Q ss_pred cccchhHHHHHHHHHHhc-----------C-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHH
Q 003513 71 TVVGLQSQLEQVWRCLVQ-----------E-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLE 138 (814)
Q Consensus 71 ~~vGr~~~~~~l~~~L~~-----------~-~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 138 (814)
.+.|.+..+++|.+.+.- + ...+-+.++|++|+|||++|+++++.. ...| +.+...
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f-----i~v~~~---- 521 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF-----IAVRGP---- 521 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEehH----
Confidence 467888888877776531 1 234568899999999999999999987 3333 222211
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhccCceEEEEccccCccc--------------ccccc---ccC--CC
Q 003513 139 KIQETIGKKIGLCNDSWKNKSLEEKAHDIFK-TLSKKKFALLLDDLWERVD--------------LKKIG---VPL--PK 198 (814)
Q Consensus 139 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~--------------~~~~~---~~~--~~ 198 (814)
++ .... .. ..+..+..+.+ .-+..+.+|+||+++.... +..+. ..+ ..
T Consensus 522 ~l----~~~~-------vG-ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~ 589 (733)
T TIGR01243 522 EI----LSKW-------VG-ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELS 589 (733)
T ss_pred HH----hhcc-------cC-cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCC
Confidence 11 1111 11 12223333333 3345789999999864310 11111 111 12
Q ss_pred CcEEEEecCCccccc-----cCCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCCh
Q 003513 199 NSAVVFTTRFVDVCG-----GMEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLP 265 (814)
Q Consensus 199 ~~~iiiTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 265 (814)
+..||.||....... .-..+..+.++..+.++-.++|+.+........+.+ ...+++.+.|.-
T Consensus 590 ~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 590 NVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred CEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 445666775544321 113456788999999999999987654433222212 455667777643
No 203
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.17 E-value=0.0029 Score=65.46 Aligned_cols=135 Identities=16% Similarity=0.181 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHhcCCccccccCCCCcccccccCCCCCcccchhHHHHHHHHHHh-cC-CCceEEEEEcCCCCcHHHH
Q 003513 31 RKVVKRLRDVKALKGEGVFEEVAAPDPELISAADERPTEPTVVGLQSQLEQVWRCLV-QE-PAAGIIGLYGMGGVGKTTL 108 (814)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~-~~-~~~~~i~i~G~gGiGKTtL 108 (814)
+.+..++.+++.-.+++.+-..... . ...... .++.+-+-| .+|. .+ +.-+++-|+|++|+|||||
T Consensus 4 ~~~~~~~~~~~~~~g~~~~~~~~~~-~--~~~~~~--i~TGi~~LD-------~~Lg~GGlp~G~iteI~G~~GsGKTtL 71 (321)
T TIGR02012 4 KALEAALAQIEKQFGKGSIMRLGEK-S--VMDVET--ISTGSLSLD-------LALGVGGLPRGRIIEIYGPESSGKTTL 71 (321)
T ss_pred HHHHHHHHHHHHHcCcceeEECccc-c--cccCce--ecCCCHHHH-------HHhcCCCCcCCeEEEEECCCCCCHHHH
Confidence 3466778888888887743222111 1 011111 112222222 2333 22 3557999999999999999
Q ss_pred HHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHHHHHhc-cCceEEEEcccc
Q 003513 109 LTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDS---WKNKSLEEKAHDIFKTLS-KKKFALLLDDLW 184 (814)
Q Consensus 109 a~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~ 184 (814)
|.+++.... ..-..++|++....++.. .+++++...+. ....+.++....+...++ +..-++|+|.|.
T Consensus 72 aL~~~~~~~---~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 72 ALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHHHHHHH---HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCcEEEEcchh
Confidence 999888762 334567899877655542 35555543321 133456666666666554 456799999985
Q ss_pred C
Q 003513 185 E 185 (814)
Q Consensus 185 ~ 185 (814)
.
T Consensus 144 a 144 (321)
T TIGR02012 144 A 144 (321)
T ss_pred h
Confidence 4
No 204
>PRK04132 replication factor C small subunit; Provisional
Probab=97.16 E-value=0.0062 Score=71.08 Aligned_cols=154 Identities=15% Similarity=0.113 Sum_probs=96.8
Q ss_pred EEc--CCCCcHHHHHHHHHhhhccCCCCC-CeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcc
Q 003513 97 LYG--MGGVGKTTLLTQINNKFVDNPKDF-DYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLSK 173 (814)
Q Consensus 97 i~G--~gGiGKTtLa~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 173 (814)
+.| |.++||||+|..++++.- .+.+ ..++-+++++...+..+...+-+...... .-..
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~--g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~-----------------~~~~ 629 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELF--GENWRHNFLELNASDERGINVIREKVKEFARTKP-----------------IGGA 629 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhh--cccccCeEEEEeCCCcccHHHHHHHHHHHHhcCC-----------------cCCC
Confidence 346 889999999999999861 1222 35677777776666655544433221110 0012
Q ss_pred CceEEEEccccCcc--c---cccccccCCCCcEEEEecCCcc-cccc-CCccceEEeccCCHHhHHHHHHHHhccccccC
Q 003513 174 KKFALLLDDLWERV--D---LKKIGVPLPKNSAVVFTTRFVD-VCGG-MEARRMFKVACLSDEDAWELFREKVGEETIES 246 (814)
Q Consensus 174 ~~~LlVlDdv~~~~--~---~~~~~~~~~~~~~iiiTtR~~~-~~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~ 246 (814)
+.-++|||+++... + +..+....+..+++|+++.+.. +... ......+++.+++.++....+...+.......
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i 709 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL 709 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 45799999998652 2 3333343445777777666443 2221 23357899999999999988887765333222
Q ss_pred CCChHHHHHHHHHHcCCChHHHHHHH
Q 003513 247 HHSLPELAQTVAKECRGLPLALITIG 272 (814)
Q Consensus 247 ~~~~~~~~~~i~~~~~g~Plal~~~~ 272 (814)
+ ++....|++.++|-+..+..+-
T Consensus 710 ~---~e~L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 710 T---EEGLQAILYIAEGDMRRAINIL 732 (846)
T ss_pred C---HHHHHHHHHHcCCCHHHHHHHH
Confidence 2 6678899999999886554433
No 205
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.15 E-value=0.0015 Score=68.12 Aligned_cols=47 Identities=21% Similarity=0.348 Sum_probs=41.4
Q ss_pred CcccchhHHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 70 PTVVGLQSQLEQVWRCLVQ-----EPAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~-----~~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
..++|.++.++++++++.. +...+++.|+|++|+||||||+.+++..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3799999999999999865 2246899999999999999999999988
No 206
>PRK07261 topology modulation protein; Provisional
Probab=97.14 E-value=0.0015 Score=61.87 Aligned_cols=66 Identities=21% Similarity=0.426 Sum_probs=42.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccC-CCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 003513 94 IIGLYGMGGVGKTTLLTQINNKFVDN-PKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLS 172 (814)
Q Consensus 94 ~i~i~G~gGiGKTtLa~~~~~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 172 (814)
.|.|+|++|+||||||+.+.... .. .-+.|...|-.. +...+.++....+.+.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~-~~~~i~~D~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~ 57 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY-NCPVLHLDTLHFQPN-----------------------WQERDDDDMIADISNFLL 57 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh-CCCeEecCCEEeccc-----------------------cccCCHHHHHHHHHHHHh
Confidence 48999999999999999998775 21 123455555211 122234455566666666
Q ss_pred cCceEEEEccccC
Q 003513 173 KKKFALLLDDLWE 185 (814)
Q Consensus 173 ~~~~LlVlDdv~~ 185 (814)
+.+ .|+|+...
T Consensus 58 ~~~--wIidg~~~ 68 (171)
T PRK07261 58 KHD--WIIDGNYS 68 (171)
T ss_pred CCC--EEEcCcch
Confidence 666 67788643
No 207
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.14 E-value=0.0016 Score=62.84 Aligned_cols=88 Identities=20% Similarity=0.232 Sum_probs=54.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCc-cCHHHHHHHHHHHhCCCCCC-CCCCCHHHHHHHHHHH
Q 003513 93 GIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKD-LQLEKIQETIGKKIGLCNDS-WKNKSLEEKAHDIFKT 170 (814)
Q Consensus 93 ~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~~~ 170 (814)
+++.++|+.|+||||.+..++.... ..-..+..++.... ....+-++..++.++++... ....+..+......+.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~---~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLK---LKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHH---HTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHh---hccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 6899999999999998888888772 22446777776433 23456677888888865321 1223444555444444
Q ss_pred hccCc-eEEEEccc
Q 003513 171 LSKKK-FALLLDDL 183 (814)
Q Consensus 171 l~~~~-~LlVlDdv 183 (814)
.+.++ =++++|=.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 44443 46777765
No 208
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.13 E-value=9.1e-05 Score=83.83 Aligned_cols=243 Identities=20% Similarity=0.196 Sum_probs=122.8
Q ss_pred CCCcccEEEcccCC-Cccc-cchhhccCCcccEEEccCC-cccccc----CcccccccccCEEEecCCC-Ccc--cChhh
Q 003513 447 TCPHLLTLFLNRNP-LRTI-TGGFFQSMSCLTVLKMSDN-IMLRQL----PMGISKLVSLQLLDISNTS-VTE--LPEDL 516 (814)
Q Consensus 447 ~l~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~L~~~-~~~~~l----p~~i~~l~~L~~L~l~~~~-l~~--lp~~i 516 (814)
.++.|+.|.+.++. +... ...+...+++|+.|+++++ ...... ......+.+|+.|+++++. ++. +..-.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 36777777777665 3321 1233567788888888762 122211 1233455778888888875 552 22222
Q ss_pred hcCCCCceeccccccccce-eCccccCCCcccceeeccccCcccchhhhchHHHHcCCCCccEEEEEecChhhHHHHhcc
Q 003513 517 KALVNLKCLNLVWAKELVV-VPQQLLSNFSRLRVLRMFATGFLLSSWHENVAEELLGLKYLEVLEISFRSFEAYQTFLSS 595 (814)
Q Consensus 517 ~~l~~L~~L~l~~~~~l~~-~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 595 (814)
..+++|++|.+.+|..++. .-..+..++++|++|++++|..+. .........++++|+.|.+.....
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~---d~~l~~~~~~c~~l~~l~~~~~~~--------- 333 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT---DSGLEALLKNCPNLRELKLLSLNG--------- 333 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch---HHHHHHHHHhCcchhhhhhhhcCC---------
Confidence 3477888888777764222 112234567788888888776631 122333345566666655442221
Q ss_pred ccccccceeeeecccCCCC--cccccCccCCCCCcEEEeccCCCcceEEecccccccccCCccccCCccEEeeecCcccc
Q 003513 596 QKLRSCTHALLLHRFDREE--SIDVADLADLEQLNTLDFYGCGCIKGLKIDCNDMVQKSRQPYVFRSLEKVTVRFCRNLR 673 (814)
Q Consensus 596 ~~~~~~l~~L~l~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~ 673 (814)
+..++.+.+..+.... ......+..+++|+.+.+.+|. .... ...+.+.+|+.++
T Consensus 334 ---c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~-------------------~~~~~l~gc~~l~ 390 (482)
T KOG1947|consen 334 ---CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDL-------------------GLELSLRGCPNLT 390 (482)
T ss_pred ---CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCc-------------------chHHHhcCCcccc
Confidence 1122222222222211 1111234445666666666555 2211 1134445555552
Q ss_pred -cccc-cccCCCCcEEEEecChhhHHHhccCCCCCcCCccccCCCCCCCcceeccccccccccc
Q 003513 674 -HLTF-LVFAPNLKSISVRYCDDMEEIISAGEFDDIPEMTGIINSPFAKLQRLELWGLVRLKSI 735 (814)
Q Consensus 674 -~l~~-l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l 735 (814)
.+.. .....+|+.|++..|...+..... .....+.+++.+.+.+|+.+...
T Consensus 391 ~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~-----------~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 391 ESLELRLCRSDSLRVLNLSDCRLVTDKGLR-----------CLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred hHHHHHhccCCccceEecccCccccccchH-----------HHhhhhhccccCCccCcccccch
Confidence 2211 112333777777777655443110 00011666777777777766643
No 209
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.13 E-value=8.9e-05 Score=64.16 Aligned_cols=88 Identities=26% Similarity=0.382 Sum_probs=76.9
Q ss_pred ccEEEEEcccCCCcCCCC-C-CCCCcccEEEcccCCCccccchhhccCCcccEEEccCCccccccCcccccccccCEEEe
Q 003513 427 EMVRRLSLMKNSIENLPT-V-PTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGISKLVSLQLLDI 504 (814)
Q Consensus 427 ~~l~~L~l~~~~~~~l~~-~-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l 504 (814)
..+...++++|.+.++|. + ..++.+++|++.+|.+.++|.. +..|+.||.|+++.| .+...|..+-.|.+|-+|+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccC-ccccchHHHHHHHhHHHhcC
Confidence 456778888888888773 3 5667899999999999999998 899999999999999 88889999999999999999
Q ss_pred cCCCCcccChhh
Q 003513 505 SNTSVTELPEDL 516 (814)
Q Consensus 505 ~~~~l~~lp~~i 516 (814)
.++.+.++|..+
T Consensus 131 ~~na~~eid~dl 142 (177)
T KOG4579|consen 131 PENARAEIDVDL 142 (177)
T ss_pred CCCccccCcHHH
Confidence 999998888764
No 210
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.13 E-value=0.0034 Score=64.97 Aligned_cols=135 Identities=18% Similarity=0.182 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHhcCCccccccCCCCcccccccCCCCCcccchhHHHHHHHHHHh-cC-CCceEEEEEcCCCCcHHHH
Q 003513 31 RKVVKRLRDVKALKGEGVFEEVAAPDPELISAADERPTEPTVVGLQSQLEQVWRCLV-QE-PAAGIIGLYGMGGVGKTTL 108 (814)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~-~~-~~~~~i~i~G~gGiGKTtL 108 (814)
+.+..++.+++...+++.+-..... . ...... .++.+-+.| .+|. .+ +.-+++-|+|++|+|||||
T Consensus 4 ~~~~~~~~~i~~~~g~~~~~~~~~~-~--~~~~~~--isTGi~~LD-------~~Lg~GGlp~G~iteI~Gp~GsGKTtL 71 (325)
T cd00983 4 KALELALKQIEKKFGKGSIMKLGDD-A--VQDVEV--IPTGSLSLD-------IALGIGGYPKGRIIEIYGPESSGKTTL 71 (325)
T ss_pred HHHHHHHHHHHHHhCCcceEECccc-c--ccCCce--ecCCCHHHH-------HHhcCCCccCCeEEEEECCCCCCHHHH
Confidence 3467778888888887743222211 1 111111 112222222 2333 22 3457899999999999999
Q ss_pred HHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHHHHHhcc-CceEEEEcccc
Q 003513 109 LTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDS---WKNKSLEEKAHDIFKTLSK-KKFALLLDDLW 184 (814)
Q Consensus 109 a~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 184 (814)
|.+++.... .....++|++....++.. .++.++...+. ....+.++....+...++. ..-++|+|.|.
T Consensus 72 al~~~~~~~---~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 72 ALHAIAEAQ---KLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHHHHHH---HcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCCEEEEcchH
Confidence 999887762 334578899887766543 34455543211 1234566666666655543 56799999975
Q ss_pred C
Q 003513 185 E 185 (814)
Q Consensus 185 ~ 185 (814)
.
T Consensus 144 a 144 (325)
T cd00983 144 A 144 (325)
T ss_pred h
Confidence 3
No 211
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.12 E-value=0.0029 Score=74.62 Aligned_cols=103 Identities=17% Similarity=0.257 Sum_probs=61.5
Q ss_pred CcccchhHHHHHHHHHHhc------C--CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHH
Q 003513 70 PTVVGLQSQLEQVWRCLVQ------E--PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQ 141 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~------~--~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 141 (814)
..++|.+..++.+...+.. + ....++.++|+.|+|||+||+.++... . ...+.++.+...+...+
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l---~---~~~~~~d~se~~~~~~~- 526 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL---G---VHLERFDMSEYMEKHTV- 526 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh---c---CCeEEEeCchhhhcccH-
Confidence 4588999999999888763 1 123468899999999999999999877 2 23455555443222111
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHhccCc-eEEEEccccCc
Q 003513 142 ETIGKKIGLCNDSWKNKSLEEKAHDIFKTLSKKK-FALLLDDLWER 186 (814)
Q Consensus 142 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~LlVlDdv~~~ 186 (814)
...+|.+.. ....+ ....+.+.++.++ -+++||+++..
T Consensus 527 ---~~lig~~~g-yvg~~---~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 527 ---SRLIGAPPG-YVGFE---QGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred ---HHHhcCCCC-Ccccc---hhhHHHHHHHhCCCeEEEEechhhc
Confidence 112222110 01111 1223444554444 59999999754
No 212
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.12 E-value=0.0032 Score=67.07 Aligned_cols=140 Identities=14% Similarity=0.101 Sum_probs=81.0
Q ss_pred cccchhHHHHHHHHHHhcCCCceE-EEEEcCCCCcHHHHHHHHHhhhccCCC------------------CCCeEEEEEE
Q 003513 71 TVVGLQSQLEQVWRCLVQEPAAGI-IGLYGMGGVGKTTLLTQINNKFVDNPK------------------DFDYVIWVVV 131 (814)
Q Consensus 71 ~~vGr~~~~~~l~~~L~~~~~~~~-i~i~G~gGiGKTtLa~~~~~~~~~~~~------------------~f~~~~wv~~ 131 (814)
.++|-+....++..+..+.++.+. +.++|+.|+||||+|..+++....... ..+.+..+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 367888888888888875434554 999999999999999999998721110 1123444444
Q ss_pred CCccC---HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCcc-----ccccccccCCCCcEEE
Q 003513 132 SKDLQ---LEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWERV-----DLKKIGVPLPKNSAVV 203 (814)
Q Consensus 132 ~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----~~~~~~~~~~~~~~ii 203 (814)
+.... ..+..+.+.+...... ..++.-++|+|+++... .+.....-.+..+.+|
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~------------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~i 143 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESP------------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFI 143 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCC------------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEE
Confidence 43333 2233333333322211 02567799999997652 2333334445578888
Q ss_pred EecCCcc-cccc-CCccceEEeccCCH
Q 003513 204 FTTRFVD-VCGG-MEARRMFKVACLSD 228 (814)
Q Consensus 204 iTtR~~~-~~~~-~~~~~~~~l~~L~~ 228 (814)
++|.+.. +... ......+++.+.+.
T Consensus 144 l~~n~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 144 LITNDPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred EEcCChhhccchhhhcceeeecCCchH
Confidence 8777332 2221 12334566666333
No 213
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.12 E-value=0.012 Score=62.61 Aligned_cols=42 Identities=21% Similarity=0.385 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 75 LQSQLEQVWRCLVQE--PAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 75 r~~~~~~l~~~L~~~--~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
|+...+.|.+.+.+. ....+|+|.|.=|+||||+.+.+.+..
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455667777777764 467899999999999999999999998
No 214
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.10 E-value=0.0021 Score=60.49 Aligned_cols=39 Identities=28% Similarity=0.455 Sum_probs=30.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCcc
Q 003513 94 IIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDL 135 (814)
Q Consensus 94 ~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 135 (814)
++.|+|++|+||||++..++... ...-..++|+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcch
Confidence 36899999999999999999987 3344567888776553
No 215
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0056 Score=65.13 Aligned_cols=140 Identities=24% Similarity=0.256 Sum_probs=84.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH---
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDI--- 167 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l--- 167 (814)
....+.+.|++|+|||+||..++..- .|..+--+...+ .+|. ++......+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S-----~FPFvKiiSpe~-------------miG~--------sEsaKc~~i~k~ 590 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS-----DFPFVKIISPED-------------MIGL--------SESAKCAHIKKI 590 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc-----CCCeEEEeChHH-------------ccCc--------cHHHHHHHHHHH
Confidence 56688899999999999999998764 666443332111 1121 222223333
Q ss_pred -HHHhccCceEEEEccccCccccccccccC----------------CCCcE--EEEecCCccccccCCc----cceEEec
Q 003513 168 -FKTLSKKKFALLLDDLWERVDLKKIGVPL----------------PKNSA--VVFTTRFVDVCGGMEA----RRMFKVA 224 (814)
Q Consensus 168 -~~~l~~~~~LlVlDdv~~~~~~~~~~~~~----------------~~~~~--iiiTtR~~~~~~~~~~----~~~~~l~ 224 (814)
.+.-+..=-.+|+||+....+|-.++..+ |.|-| |+-||-...+...|+. ...|.++
T Consensus 591 F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 591 FEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred HHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecC
Confidence 33445566799999998776665553322 22444 3446666677776653 3478999
Q ss_pred cCCH-HhHHHHHHHHh-ccccccCCCChHHHHHHHHHHc
Q 003513 225 CLSD-EDAWELFREKV-GEETIESHHSLPELAQTVAKEC 261 (814)
Q Consensus 225 ~L~~-~ea~~l~~~~~-~~~~~~~~~~~~~~~~~i~~~~ 261 (814)
.++. ++..+.+...- +. +.+.+.++.+...++
T Consensus 671 nl~~~~~~~~vl~~~n~fs-----d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEELNIFS-----DDEVRAIAEQLLSKK 704 (744)
T ss_pred ccCchHHHHHHHHHccCCC-----cchhHHHHHHHhccc
Confidence 9987 77777776643 21 223344455555544
No 216
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.09 E-value=0.006 Score=67.36 Aligned_cols=170 Identities=16% Similarity=0.142 Sum_probs=91.6
Q ss_pred CcccchhHHHHHHHHHH---hc-----C-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHH
Q 003513 70 PTVVGLQSQLEQVWRCL---VQ-----E-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKI 140 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L---~~-----~-~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 140 (814)
.++.|.+..++.+.... .. + ...+-|.++|++|.|||.+|+++++.. .-.| +-++.+ .+
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~------~l 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVG------KL 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhH------Hh
Confidence 35678877776665432 11 1 235678999999999999999999987 3222 222211 11
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-hccCceEEEEccccCccc--------------ccccccc---CCCCcEE
Q 003513 141 QETIGKKIGLCNDSWKNKSLEEKAHDIFKT-LSKKKFALLLDDLWERVD--------------LKKIGVP---LPKNSAV 202 (814)
Q Consensus 141 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~--------------~~~~~~~---~~~~~~i 202 (814)
.. .. .. ..+.....+.+. -...+.+|+||+++.... +..+... ...+.-|
T Consensus 296 ~~----~~-------vG-ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~v 363 (489)
T CHL00195 296 FG----GI-------VG-ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFV 363 (489)
T ss_pred cc----cc-------cC-hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEE
Confidence 11 00 01 112222222222 234789999999974311 0001000 1113446
Q ss_pred EEecCCccc-----cccCCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCCh
Q 003513 203 VFTTRFVDV-----CGGMEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLP 265 (814)
Q Consensus 203 iiTtR~~~~-----~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 265 (814)
|.||.+... .+.-.-+..+.++.-+.++-.++|..+......... .......+++.+.|.-
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~--~~~dl~~La~~T~GfS 429 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSW--KKYDIKKLSKLSNKFS 429 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcc--cccCHHHHHhhcCCCC
Confidence 667765432 122234567889989999999999888754321100 0122455666665543
No 217
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.09 E-value=0.0052 Score=72.75 Aligned_cols=170 Identities=17% Similarity=0.140 Sum_probs=93.3
Q ss_pred cccchhHHHHHHHHHHhc---------C---CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHH
Q 003513 71 TVVGLQSQLEQVWRCLVQ---------E---PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLE 138 (814)
Q Consensus 71 ~~vGr~~~~~~l~~~L~~---------~---~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 138 (814)
++.|.+..+++|.+.+.- . ...+.+.|+|++|+|||+||+.+++.. ...| +.++.+
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~---i~i~~~------ 246 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF---ISINGP------ 246 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE---EEEecH------
Confidence 478999999998877631 0 234678899999999999999999987 3222 222211
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCcc----------------ccccccccCCC-CcE
Q 003513 139 KIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWERV----------------DLKKIGVPLPK-NSA 201 (814)
Q Consensus 139 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~~~~~~~~-~~~ 201 (814)
.+. ... ...........+.......+.+|+||+++... ++..+...+.. +..
T Consensus 247 ~i~----~~~-------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 247 EIM----SKY-------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred HHh----ccc-------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 111 000 01111222223333345567899999986431 11111111222 334
Q ss_pred EEE-ecCCcc-cccc----CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHH
Q 003513 202 VVF-TTRFVD-VCGG----MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLA 267 (814)
Q Consensus 202 iii-TtR~~~-~~~~----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 267 (814)
++| ||.... +... ..-...+.+...+.++-.+++........... ......+++.+.|.--+
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~----d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE----DVDLDKLAEVTHGFVGA 383 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc----ccCHHHHHHhCCCCCHH
Confidence 444 454332 1111 12245678888899998888886654322111 22356678888876543
No 218
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.09 E-value=0.001 Score=73.40 Aligned_cols=74 Identities=24% Similarity=0.359 Sum_probs=56.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003513 90 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFK 169 (814)
Q Consensus 90 ~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 169 (814)
+.-+++.++|++|+||||||.-+++.. .| .|+=|.+|+..+...+-..|...+....
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq~~s----------------- 380 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQNHS----------------- 380 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHhhcc-----------------
Confidence 346799999999999999999999876 33 4778888888888777777766654321
Q ss_pred Hh--ccCceEEEEccccCc
Q 003513 170 TL--SKKKFALLLDDLWER 186 (814)
Q Consensus 170 ~l--~~~~~LlVlDdv~~~ 186 (814)
.+ .+++.-||+|.++-.
T Consensus 381 ~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 381 VLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred ccccCCCcceEEEecccCC
Confidence 22 258889999998754
No 219
>PHA00729 NTP-binding motif containing protein
Probab=97.09 E-value=0.0026 Score=61.88 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=28.0
Q ss_pred HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 81 QVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 81 ~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
++++.+... +...|.|+|.+|+||||||..+++..
T Consensus 7 ~~~~~l~~~-~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNN-GFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcC-CeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 344555555 55689999999999999999999885
No 220
>PRK09354 recA recombinase A; Provisional
Probab=97.09 E-value=0.0044 Score=64.65 Aligned_cols=135 Identities=16% Similarity=0.167 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHhcCCccccccCCCCcccccccCCCCCcccchhHHHHHHHHHHh-cC-CCceEEEEEcCCCCcHHHH
Q 003513 31 RKVVKRLRDVKALKGEGVFEEVAAPDPELISAADERPTEPTVVGLQSQLEQVWRCLV-QE-PAAGIIGLYGMGGVGKTTL 108 (814)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~-~~-~~~~~i~i~G~gGiGKTtL 108 (814)
+.+..++.+++.-.+++..-....... ..... .++.+-+- -.+|. .+ +.-+++-|+|++|+|||||
T Consensus 9 ~~~~~~~~~i~~~~g~~~~~~~~~~~~---~~~~~--isTGi~~L-------D~~LG~GGip~G~IteI~G~~GsGKTtL 76 (349)
T PRK09354 9 KALEAALKQIEKQFGKGSIMRLGDDAA---MDVEV--ISTGSLAL-------DIALGIGGLPRGRIVEIYGPESSGKTTL 76 (349)
T ss_pred HHHHHHHHHHHHHhCCCCceEcccccc---cCCce--ecCCcHHH-------HHHhcCCCCcCCeEEEEECCCCCCHHHH
Confidence 446677788888877774322221111 01111 11222222 22343 22 3457999999999999999
Q ss_pred HHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHHHHHhcc-CceEEEEcccc
Q 003513 109 LTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDS---WKNKSLEEKAHDIFKTLSK-KKFALLLDDLW 184 (814)
Q Consensus 109 a~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 184 (814)
|.+++... ...-..++|++....++. ..++.+|...+. ....+.++....+...++. ..-++|+|-|.
T Consensus 77 al~~~~~~---~~~G~~~~yId~E~s~~~-----~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 77 ALHAIAEA---QKAGGTAAFIDAEHALDP-----VYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHHHHHH---HHcCCcEEEECCccchHH-----HHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 99988876 233467899988777664 245555544321 1334566666666666544 56799999985
Q ss_pred C
Q 003513 185 E 185 (814)
Q Consensus 185 ~ 185 (814)
.
T Consensus 149 a 149 (349)
T PRK09354 149 A 149 (349)
T ss_pred h
Confidence 3
No 221
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.08 E-value=0.0037 Score=74.14 Aligned_cols=47 Identities=30% Similarity=0.373 Sum_probs=38.5
Q ss_pred CcccchhHHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 70 PTVVGLQSQLEQVWRCLVQ-----EPAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~-----~~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
..++|.+..++.|.+++.. ....+++.++|++|+|||++|+.+++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999886642 1234589999999999999999999987
No 222
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.07 E-value=0.0024 Score=63.77 Aligned_cols=89 Identities=22% Similarity=0.237 Sum_probs=53.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHH----hCCCCCCCCCCCHH---HH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKK----IGLCNDSWKNKSLE---EK 163 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~----l~~~~~~~~~~~~~---~~ 163 (814)
.-.++.|+|.+|+|||++|.+++.... .....++|++.. .++.+.+.+ ++.. +.....-....+.. +.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERFKQ-IAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHHHH-HHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 457999999999999999999998772 334678999887 555544432 2221 00000000112222 23
Q ss_pred HHHHHHHhccCceEEEEcccc
Q 003513 164 AHDIFKTLSKKKFALLLDDLW 184 (814)
Q Consensus 164 ~~~l~~~l~~~~~LlVlDdv~ 184 (814)
+..+.+.++.+.-++|+|.+.
T Consensus 97 i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 97 IRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHHhcccEEEEeCcH
Confidence 344444444566688888874
No 223
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.06 E-value=0.0046 Score=61.88 Aligned_cols=91 Identities=15% Similarity=0.178 Sum_probs=57.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCC------CeEEEEEECCccCHHHHHHHHHHHhCCCCC-------CCCC
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDF------DYVIWVVVSKDLQLEKIQETIGKKIGLCND-------SWKN 157 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------~~~~ 157 (814)
.-.++.|+|++|+|||+||.+++.... ... ..++|++....++...+.+ ++...+...+ -...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~---~~~~~~g~~~~v~yi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQ---LPGELGGLEGKVVYIDTEGAFRPERLVQ-LAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhh---cccccCCCcceEEEEecCCCCCHHHHHH-HHHHhccchhhhhccEEEEeC
Confidence 457999999999999999999987752 222 5789999887776655543 3333221110 0122
Q ss_pred CCHHHHHHHHHHHhc---c-CceEEEEccccC
Q 003513 158 KSLEEKAHDIFKTLS---K-KKFALLLDDLWE 185 (814)
Q Consensus 158 ~~~~~~~~~l~~~l~---~-~~~LlVlDdv~~ 185 (814)
.+.++....+.+..+ . +.-++|+|.+..
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 345555555555443 3 445899999753
No 224
>PRK06921 hypothetical protein; Provisional
Probab=97.05 E-value=0.00069 Score=68.90 Aligned_cols=39 Identities=33% Similarity=0.393 Sum_probs=29.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEE
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVV 131 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 131 (814)
....+.++|..|+|||+||.++++... ......++|+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence 356799999999999999999999872 121345667654
No 225
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.05 E-value=0.0019 Score=75.73 Aligned_cols=156 Identities=15% Similarity=0.213 Sum_probs=86.2
Q ss_pred CCcccchhHHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHH
Q 003513 69 EPTVVGLQSQLEQVWRCLVQ-----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQET 143 (814)
Q Consensus 69 ~~~~vGr~~~~~~l~~~L~~-----~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 143 (814)
....+|.++.+++|.++|.. .....++.++|++|+||||+|+.++... ...|- -+..+...+...+...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l---~~~~~---~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT---GRKYV---RMALGGVRDEAEIRGH 394 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEE---EEEcCCCCCHHHhccc
Confidence 44689999999999988863 1244689999999999999999999877 33332 2333333333222111
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCccc------cccc---ccc--------------CC-CC
Q 003513 144 IGKKIGLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWERVD------LKKI---GVP--------------LP-KN 199 (814)
Q Consensus 144 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~------~~~~---~~~--------------~~-~~ 199 (814)
-....| .........+... ....-+++||.++.... ...+ ..+ +. .+
T Consensus 395 ~~~~~g--------~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 395 RRTYIG--------SMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred hhccCC--------CCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCc
Confidence 100111 0111122222221 22344788999864311 0111 111 11 13
Q ss_pred cEEEEecCCccccc-cCCccceEEeccCCHHhHHHHHHHHh
Q 003513 200 SAVVFTTRFVDVCG-GMEARRMFKVACLSDEDAWELFREKV 239 (814)
Q Consensus 200 ~~iiiTtR~~~~~~-~~~~~~~~~l~~L~~~ea~~l~~~~~ 239 (814)
..+|.|+.+..+.. ..+-..++++.+++.+|-.++.+++.
T Consensus 466 v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 466 VMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred eEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 44455555433311 11233578999999999988887775
No 226
>PRK06526 transposase; Provisional
Probab=97.02 E-value=0.0012 Score=66.50 Aligned_cols=25 Identities=24% Similarity=0.281 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
...+.|+|++|+|||+||..++...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH
Confidence 3568999999999999999999887
No 227
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.005 Score=61.51 Aligned_cols=82 Identities=16% Similarity=0.189 Sum_probs=52.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccC--CCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDN--PKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFK 169 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 169 (814)
.++|.++||+|.|||+|.+++++.. .+ ...|....-+.+... .++...... ..+-+....+.|.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL-SIR~~~~y~~~~liEinsh----sLFSKWFsE--------SgKlV~kmF~kI~E 243 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL-SIRTNDRYYKGQLIEINSH----SLFSKWFSE--------SGKLVAKMFQKIQE 243 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh-eeeecCccccceEEEEehh----HHHHHHHhh--------hhhHHHHHHHHHHH
Confidence 4789999999999999999999986 33 334444445544432 233333322 12345556667777
Q ss_pred HhccCc--eEEEEccccCc
Q 003513 170 TLSKKK--FALLLDDLWER 186 (814)
Q Consensus 170 ~l~~~~--~LlVlDdv~~~ 186 (814)
.++++. +.+.+|.|...
T Consensus 244 Lv~d~~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 244 LVEDRGNLVFVLIDEVESL 262 (423)
T ss_pred HHhCCCcEEEEEeHHHHHH
Confidence 777655 34557998754
No 228
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.00 E-value=0.036 Score=58.28 Aligned_cols=89 Identities=18% Similarity=0.194 Sum_probs=53.4
Q ss_pred cCceEEEEccccCc--cc---cccccccCCCCcEEEE-ecCCcccccc-CCccceEEeccCCHHhHHHHHHHHhcccccc
Q 003513 173 KKKFALLLDDLWER--VD---LKKIGVPLPKNSAVVF-TTRFVDVCGG-MEARRMFKVACLSDEDAWELFREKVGEETIE 245 (814)
Q Consensus 173 ~~~~LlVlDdv~~~--~~---~~~~~~~~~~~~~iii-TtR~~~~~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~ 245 (814)
+++-++|+|+++.. .. +-+...--++++.+|. |++...+... ..-...+.+.+++.++..+.+.+. +.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~---- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GV---- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CC----
Confidence 45668999998754 22 2222233344565554 5554444322 223468999999999999999775 11
Q ss_pred CCCChHHHHHHHHHHcCCChHHHHHHH
Q 003513 246 SHHSLPELAQTVAKECRGLPLALITIG 272 (814)
Q Consensus 246 ~~~~~~~~~~~i~~~~~g~Plal~~~~ 272 (814)
+ . ...++..++|.|..+..+.
T Consensus 206 -~---~--~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 -A---D--ADALLAEAGGAPLAALALA 226 (342)
T ss_pred -C---h--HHHHHHHcCCCHHHHHHHH
Confidence 1 1 2235778899997655443
No 229
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.99 E-value=0.015 Score=56.32 Aligned_cols=167 Identities=16% Similarity=0.244 Sum_probs=96.5
Q ss_pred CcccchhHHHHH---HHHHHhcC-----CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHH
Q 003513 70 PTVVGLQSQLEQ---VWRCLVQE-----PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQ 141 (814)
Q Consensus 70 ~~~vGr~~~~~~---l~~~L~~~-----~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 141 (814)
.++||.++.+.+ |++.|.+. =..+-|..+|++|.|||.+|+++++.. +-.| +.+. ..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~-----l~vk-------at 185 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPL-----LLVK-------AT 185 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCce-----EEec-------hH
Confidence 357898776543 44455442 146788999999999999999999987 2222 2221 12
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-ccCceEEEEccccCcc----------cc----cccc-----ccCCCCcE
Q 003513 142 ETIGKKIGLCNDSWKNKSLEEKAHDIFKTL-SKKKFALLLDDLWERV----------DL----KKIG-----VPLPKNSA 201 (814)
Q Consensus 142 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~----------~~----~~~~-----~~~~~~~~ 201 (814)
.-|.+..| +....+..+.+.- +.-++++.+|.++... ++ .++. +.-..|..
T Consensus 186 ~liGehVG---------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 186 ELIGEHVG---------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred HHHHHHhh---------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 22333322 2233444444443 3478999999987531 11 1111 11122666
Q ss_pred EEEecCCcccccc---CCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCC
Q 003513 202 VVFTTRFVDVCGG---MEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGL 264 (814)
Q Consensus 202 iiiTtR~~~~~~~---~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 264 (814)
.|.+|.+...... ..-.+.++..--+++|-..++..++..-....+ ...+.++++.+|.
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~----~~~~~~~~~t~g~ 318 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD----ADLRYLAAKTKGM 318 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc----cCHHHHHHHhCCC
Confidence 6767766655432 123456777778889999999888754332222 2245566666664
No 230
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.99 E-value=0.0026 Score=62.70 Aligned_cols=90 Identities=13% Similarity=0.201 Sum_probs=54.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCC---CCCCCCHH---HHH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCND---SWKNKSLE---EKA 164 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~---~~~ 164 (814)
.-+++.|+|++|+|||++|.+++... ......++|++... ++...+.+..........+ -....+.. ...
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~-~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTEG-LSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC-CCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 45799999999999999999998876 23356899999875 5555554432211000000 00111222 234
Q ss_pred HHHHHHhcc-CceEEEEcccc
Q 003513 165 HDIFKTLSK-KKFALLLDDLW 184 (814)
Q Consensus 165 ~~l~~~l~~-~~~LlVlDdv~ 184 (814)
..+.+.+.. +.-++|+|.+.
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcH
Confidence 444444543 45588888874
No 231
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0016 Score=71.67 Aligned_cols=153 Identities=17% Similarity=0.232 Sum_probs=88.8
Q ss_pred CCcccchhHHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHH
Q 003513 69 EPTVVGLQSQLEQVWRCLVQ-----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQET 143 (814)
Q Consensus 69 ~~~~vGr~~~~~~l~~~L~~-----~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 143 (814)
..+.+|.++.+++|.+.+.- .-+-++++++|++|||||.+|+.++... ...|- -+.++.-.+..++-.-
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkFf---RfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL---NRKFF---RFSVGGMTDVAEIKGH 483 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh---CCceE---EEeccccccHHhhccc
Confidence 34569999999999998853 2245799999999999999999999998 33331 2333333333333111
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHhc---cCceEEEEccccCc---------ccccccccc-----CC--------C
Q 003513 144 IGKKIGLCNDSWKNKSLEEKAHDIFKTLS---KKKFALLLDDLWER---------VDLKKIGVP-----LP--------K 198 (814)
Q Consensus 144 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~~~~LlVlDdv~~~---------~~~~~~~~~-----~~--------~ 198 (814)
= ..-+...--++.+.|+ ...-|+.||.|+.. ..+-.+..| |- +
T Consensus 484 R------------RTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~D 551 (906)
T KOG2004|consen 484 R------------RTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVD 551 (906)
T ss_pred c------------eeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccc
Confidence 0 0011111124455554 35678889998743 112222122 10 1
Q ss_pred CcEEEE-ecCCc-c-c-cccCCccceEEeccCCHHhHHHHHHHHh
Q 003513 199 NSAVVF-TTRFV-D-V-CGGMEARRMFKVACLSDEDAWELFREKV 239 (814)
Q Consensus 199 ~~~iii-TtR~~-~-~-~~~~~~~~~~~l~~L~~~ea~~l~~~~~ 239 (814)
=|+|++ .|-+. + + ....+.-++|++.+...+|-..+-.++.
T Consensus 552 LSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 552 LSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred hhheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 356654 33221 1 1 1122344689999999999888777764
No 232
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0013 Score=74.78 Aligned_cols=107 Identities=21% Similarity=0.344 Sum_probs=72.1
Q ss_pred CCcccchhHHHHHHHHHHhc------C--CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHH
Q 003513 69 EPTVVGLQSQLEQVWRCLVQ------E--PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKI 140 (814)
Q Consensus 69 ~~~~vGr~~~~~~l~~~L~~------~--~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 140 (814)
...++|.+..++.+.+.+.. + ....+....|+.|||||-||++++... .+.-+..+-++.|.......+
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~EkHsV 566 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYMEKHSV 566 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHHHHHHH
Confidence 34689999999999998853 1 245688889999999999999999988 444456666666655443333
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhccCce-EEEEccccCc
Q 003513 141 QETIGKKIGLCNDSWKNKSLEEKAHDIFKTLSKKKF-ALLLDDLWER 186 (814)
Q Consensus 141 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~ 186 (814)
.+- +|.+.. .... ++ ...+.+..++++| ++.||+++..
T Consensus 567 SrL----IGaPPG-YVGy--ee-GG~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 567 SRL----IGAPPG-YVGY--EE-GGQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred HHH----hCCCCC-Ccee--cc-ccchhHhhhcCCCeEEEechhhhc
Confidence 333 343321 1111 11 3456677788888 7778999754
No 233
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.97 E-value=0.0013 Score=63.90 Aligned_cols=162 Identities=15% Similarity=0.138 Sum_probs=71.5
Q ss_pred cccEEEEEcccCCCcCC-----C-CCCCCCcccEEEcccCCC----ccccc------hhhccCCcccEEEccCCcccccc
Q 003513 426 WEMVRRLSLMKNSIENL-----P-TVPTCPHLLTLFLNRNPL----RTITG------GFFQSMSCLTVLKMSDNIMLRQL 489 (814)
Q Consensus 426 ~~~l~~L~l~~~~~~~l-----~-~~~~l~~L~~L~l~~~~~----~~~~~------~~~~~l~~L~~L~L~~~~~~~~l 489 (814)
+..+..++|++|.+..- . .+.+-.+|+...+++--. ..++. ..+-+||+|+..+||.|..-...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 44566666666665431 1 233445555555554321 01111 11345666666666666332233
Q ss_pred Cc----ccccccccCEEEecCCCCcccC--------------hhhhcCCCCceeccccccccceeCccc----cCCCccc
Q 003513 490 PM----GISKLVSLQLLDISNTSVTELP--------------EDLKALVNLKCLNLVWAKELVVVPQQL----LSNFSRL 547 (814)
Q Consensus 490 p~----~i~~l~~L~~L~l~~~~l~~lp--------------~~i~~l~~L~~L~l~~~~~l~~~p~~~----i~~l~~L 547 (814)
|. .|++-+.|.+|.+++|.+..+- +....-+.|+......|+. ...|... +..-.+|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl-engs~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL-ENGSKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh-ccCcHHHHHHHHHhhcCc
Confidence 32 2344455666666666543211 1112344555555544432 3333211 1122455
Q ss_pred ceeeccccCcccchhhhchHHHHcCCCCccEEEEEecChhh
Q 003513 548 RVLRMFATGFLLSSWHENVAEELLGLKYLEVLEISFRSFEA 588 (814)
Q Consensus 548 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 588 (814)
+++.+..|.+-......-....+..+++|+.|+|..|.++.
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence 55555555541111112233344455566666666555443
No 234
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.96 E-value=0.0044 Score=62.44 Aligned_cols=93 Identities=16% Similarity=0.236 Sum_probs=55.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCC----CCCeEEEEEECCccCHHHHHHHHHHHhCCCCCC-------CCCCC
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPK----DFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDS-------WKNKS 159 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 159 (814)
.-.++.|+|++|+|||++|.+++..... .. ....++|++....++...+.+ +++..+...+. ....+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~-~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQL-PIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeC-ccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCC
Confidence 4579999999999999999999765411 11 136899999887766554433 33333321110 01122
Q ss_pred HHH---HHHHHHHHhc-c-CceEEEEccccC
Q 003513 160 LEE---KAHDIFKTLS-K-KKFALLLDDLWE 185 (814)
Q Consensus 160 ~~~---~~~~l~~~l~-~-~~~LlVlDdv~~ 185 (814)
.++ ....+.+.+. . +.-++|+|.+..
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 222 3344444443 3 566889998753
No 235
>PRK09183 transposase/IS protein; Provisional
Probab=96.94 E-value=0.0024 Score=64.86 Aligned_cols=25 Identities=36% Similarity=0.402 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
...+.|+|+.|+|||+||..++...
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999998875
No 236
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.93 E-value=0.0059 Score=60.66 Aligned_cols=42 Identities=19% Similarity=0.225 Sum_probs=33.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCcc
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDL 135 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 135 (814)
.-.++.|+|.+|+||||+|.+++... ...-..++|++....+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~e~~~ 59 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDTEGLS 59 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCCCC
Confidence 45799999999999999999999887 2334568888765544
No 237
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0075 Score=65.44 Aligned_cols=141 Identities=18% Similarity=0.233 Sum_probs=83.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKT 170 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 170 (814)
...-|.+||++|.|||-||++|+++. +-.| +.+... +++.... ..-+..+..+.+.
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----ELlNkYV------------GESErAVR~vFqR 599 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----ELLNKYV------------GESERAVRQVFQR 599 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HHHHHHh------------hhHHHHHHHHHHH
Confidence 34568899999999999999999997 4444 444332 1222211 1223334444444
Q ss_pred h-ccCceEEEEccccCccc-------------ccccc---ccCCC--CcEEEEecCCcccc-----ccCCccceEEeccC
Q 003513 171 L-SKKKFALLLDDLWERVD-------------LKKIG---VPLPK--NSAVVFTTRFVDVC-----GGMEARRMFKVACL 226 (814)
Q Consensus 171 l-~~~~~LlVlDdv~~~~~-------------~~~~~---~~~~~--~~~iiiTtR~~~~~-----~~~~~~~~~~l~~L 226 (814)
- ..-+++|.||.++...- +.+++ ..+.. |.-||-+|..+.+. +.-.-+...-++.-
T Consensus 600 AR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lP 679 (802)
T KOG0733|consen 600 ARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLP 679 (802)
T ss_pred hhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCC
Confidence 3 34799999999975411 11111 11111 66677777655552 22234567788888
Q ss_pred CHHhHHHHHHHHhc--cccccCCCChHHHHH
Q 003513 227 SDEDAWELFREKVG--EETIESHHSLPELAQ 255 (814)
Q Consensus 227 ~~~ea~~l~~~~~~--~~~~~~~~~~~~~~~ 255 (814)
+.+|-.++++..+. ......+-+++++++
T Consensus 680 n~~eR~~ILK~~tkn~k~pl~~dVdl~eia~ 710 (802)
T KOG0733|consen 680 NAEERVAILKTITKNTKPPLSSDVDLDEIAR 710 (802)
T ss_pred CHHHHHHHHHHHhccCCCCCCcccCHHHHhh
Confidence 89999999998876 333333444555443
No 238
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.89 E-value=0.0016 Score=60.58 Aligned_cols=103 Identities=21% Similarity=0.278 Sum_probs=65.3
Q ss_pred CcccEEEcccCCCccccchhhccCCcccEEEccCCccccccCccccc-ccccCEEEecCCCCcccC--hhhhcCCCCcee
Q 003513 449 PHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGISK-LVSLQLLDISNTSVTELP--EDLKALVNLKCL 525 (814)
Q Consensus 449 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~-l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L 525 (814)
.+...+++++|.+..+.. |..++.|.+|.|.+| .++.+-..+.. +++|+.|.+.+|+|.++- ..+..+++|++|
T Consensus 42 d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhccc--CCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 356677888887655543 667888888888888 66666545543 456888888888777552 235567777777
Q ss_pred cccccccccee--CccccCCCcccceeeccc
Q 003513 526 NLVWAKELVVV--PQQLLSNFSRLRVLRMFA 554 (814)
Q Consensus 526 ~l~~~~~l~~~--p~~~i~~l~~L~~L~l~~ 554 (814)
.+-+|.....- -..++.++++|+.|+...
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 77766532110 112355666666666554
No 239
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.88 E-value=0.0062 Score=60.78 Aligned_cols=90 Identities=18% Similarity=0.221 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCC
Q 003513 78 QLEQVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWK 156 (814)
Q Consensus 78 ~~~~l~~~L~~~-~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 156 (814)
.+..+.+..... .+...+.++|.+|+|||+||.++++... .....+++++ ..++...+-..... .
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it------~~~l~~~l~~~~~~-----~ 149 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIIT------VADIMSAMKDTFSN-----S 149 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEE------HHHHHHHHHHHHhh-----c
Confidence 344444444331 2345789999999999999999999983 2334566664 34455544433320 1
Q ss_pred CCCHHHHHHHHHHHhccCceEEEEccccCc
Q 003513 157 NKSLEEKAHDIFKTLSKKKFALLLDDLWER 186 (814)
Q Consensus 157 ~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 186 (814)
..+.+ .+.+.+. +.=+|||||+...
T Consensus 150 ~~~~~----~~l~~l~-~~dlLvIDDig~~ 174 (244)
T PRK07952 150 ETSEE----QLLNDLS-NVDLLVIDEIGVQ 174 (244)
T ss_pred cccHH----HHHHHhc-cCCEEEEeCCCCC
Confidence 11222 2333444 3448888998543
No 240
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.87 E-value=0.0055 Score=73.12 Aligned_cols=61 Identities=25% Similarity=0.315 Sum_probs=43.9
Q ss_pred CcccchhHHHHHHHHHHhcC--------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECC
Q 003513 70 PTVVGLQSQLEQVWRCLVQE--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSK 133 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~--------~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 133 (814)
..++|.+..++.+...+... ....++.++|+.|+|||++|+.+++.. .......+.++++.
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l---~~~~~~~i~id~se 636 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM---FDSDDAMVRIDMSE 636 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh---hcCCCcEEEEEhHH
Confidence 45889999999988887531 123478899999999999999999876 22223345555543
No 241
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.86 E-value=0.0047 Score=62.53 Aligned_cols=93 Identities=24% Similarity=0.249 Sum_probs=55.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcc---CCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCC-------CCCCCH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVD---NPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDS-------WKNKSL 160 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 160 (814)
.-.+.=|+|.+|+|||+|+.+++-...- ..+.-..++|++....+..+.+. +|+++.+...+. ....+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 3468899999999999999888655311 12223579999999988887775 456655432210 012233
Q ss_pred HHHHHH---HHHHhcc-CceEEEEcccc
Q 003513 161 EEKAHD---IFKTLSK-KKFALLLDDLW 184 (814)
Q Consensus 161 ~~~~~~---l~~~l~~-~~~LlVlDdv~ 184 (814)
+++... +...+.+ +--|||+|.+.
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHhhccccceEEEEecchH
Confidence 333333 3333333 44588888864
No 242
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.86 E-value=0.00064 Score=66.10 Aligned_cols=105 Identities=27% Similarity=0.299 Sum_probs=54.4
Q ss_pred CcccEEEEEcccCCCcCCCCCCCCCcccEEEcccCC--CccccchhhccCCcccEEEccCCccccccC--cccccccccC
Q 003513 425 GWEMVRRLSLMKNSIENLPTVPTCPHLLTLFLNRNP--LRTITGGFFQSMSCLTVLKMSDNIMLRQLP--MGISKLVSLQ 500 (814)
Q Consensus 425 ~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp--~~i~~l~~L~ 500 (814)
.+..+..+++.+..++.+..+..+++|+.|.++.|. +..-..-....+++|++|++++| .+..+. ..+..+.+|.
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLK 119 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcchh
Confidence 344566666666666666666667777777777773 22211112345566777777666 333210 1233445555
Q ss_pred EEEecCCCCcccC----hhhhcCCCCceeccccc
Q 003513 501 LLDISNTSVTELP----EDLKALVNLKCLNLVWA 530 (814)
Q Consensus 501 ~L~l~~~~l~~lp----~~i~~l~~L~~L~l~~~ 530 (814)
.|++.+|..+.+- ..+.-+++|.+|+-..+
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 5555555443221 12334555555554443
No 243
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.85 E-value=0.0021 Score=61.15 Aligned_cols=74 Identities=28% Similarity=0.374 Sum_probs=43.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKT 170 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 170 (814)
...-+.++|..|+|||.||.++++...+ .-..+.|+. ..+++..+-..- .....+. +.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~---~g~~v~f~~------~~~L~~~l~~~~-------~~~~~~~----~~~~ 105 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR---KGYSVLFIT------ASDLLDELKQSR-------SDGSYEE----LLKR 105 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH---TT--EEEEE------HHHHHHHHHCCH-------CCTTHCH----HHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc---CCcceeEee------cCceeccccccc-------cccchhh----hcCc
Confidence 3467999999999999999999998732 223466664 345555553221 1112222 2233
Q ss_pred hccCceEEEEccccC
Q 003513 171 LSKKKFALLLDDLWE 185 (814)
Q Consensus 171 l~~~~~LlVlDdv~~ 185 (814)
+. +-=||||||+-.
T Consensus 106 l~-~~dlLilDDlG~ 119 (178)
T PF01695_consen 106 LK-RVDLLILDDLGY 119 (178)
T ss_dssp HH-TSSCEEEETCTS
T ss_pred cc-cccEecccccce
Confidence 33 335788999853
No 244
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.84 E-value=0.0014 Score=63.83 Aligned_cols=109 Identities=12% Similarity=0.139 Sum_probs=59.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHH-HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 003513 93 GIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLE-KIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTL 171 (814)
Q Consensus 93 ~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 171 (814)
.+|.|+|+.|+||||++..+.... .......++.- .++.... .-...+..+-.. ..+.......++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t~-e~~~E~~~~~~~~~i~q~~v------g~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILTI-EDPIEFVHESKRSLINQREV------GLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEEE-cCCccccccCccceeeeccc------CCCccCHHHHHHHHh
Confidence 478999999999999999988876 33333333332 1111100 000011111000 111223445566777
Q ss_pred ccCceEEEEccccCccccccccccCCCCcEEEEecCCccc
Q 003513 172 SKKKFALLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDV 211 (814)
Q Consensus 172 ~~~~~LlVlDdv~~~~~~~~~~~~~~~~~~iiiTtR~~~~ 211 (814)
...+=++++|++.+.+.+.........|..++.|+-...+
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTAAETGHLVMSTLHTNSA 111 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHHHHcCCEEEEEecCCcH
Confidence 7778899999998776554433333336667777664443
No 245
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.84 E-value=0.00092 Score=59.35 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 003513 94 IIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 94 ~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
+|+|.|++|+||||+|+.+++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999987
No 246
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.83 E-value=0.0028 Score=75.62 Aligned_cols=107 Identities=18% Similarity=0.246 Sum_probs=63.6
Q ss_pred CCcccchhHHHHHHHHHHhc------C--CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHH
Q 003513 69 EPTVVGLQSQLEQVWRCLVQ------E--PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKI 140 (814)
Q Consensus 69 ~~~~vGr~~~~~~l~~~L~~------~--~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 140 (814)
...++|.+..++.+...+.. + .....+.++|+.|+|||+||+.+++.. ...-...+-++.+...+...+
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l---~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF---FGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh---cCCccceEEEEchhccccccH
Confidence 35689999999999888753 1 123467799999999999999999886 222234455555443322222
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhccCc-eEEEEccccCc
Q 003513 141 QETIGKKIGLCNDSWKNKSLEEKAHDIFKTLSKKK-FALLLDDLWER 186 (814)
Q Consensus 141 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~LlVlDdv~~~ 186 (814)
.+ -+|.+. .....+. ...+.+.++.++ -+++||+++..
T Consensus 585 ~~----l~g~~~-gyvg~~~---~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 585 SK----LIGSPP-GYVGYNE---GGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred HH----hcCCCC-cccCcCc---cchHHHHHHhCCCeEEEECChhhC
Confidence 22 122211 0111111 123445555555 58899999754
No 247
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.27 Score=52.27 Aligned_cols=147 Identities=16% Similarity=0.161 Sum_probs=83.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 003513 93 GIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLS 172 (814)
Q Consensus 93 ~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 172 (814)
|--.++||+|.|||+++.++++.. .|+ ++=+..+.-.+-.+ ++.++.. .
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L-----~yd-IydLeLt~v~~n~d-Lr~LL~~------------------------t 284 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL-----NYD-IYDLELTEVKLDSD-LRHLLLA------------------------T 284 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc-----CCc-eEEeeeccccCcHH-HHHHHHh------------------------C
Confidence 456799999999999999999987 444 22233322211111 2222211 1
Q ss_pred cCceEEEEccccCccccc--------------------cccccCCC------CcEE-EEecCCccc-----cccCCccce
Q 003513 173 KKKFALLLDDLWERVDLK--------------------KIGVPLPK------NSAV-VFTTRFVDV-----CGGMEARRM 220 (814)
Q Consensus 173 ~~~~LlVlDdv~~~~~~~--------------------~~~~~~~~------~~~i-iiTtR~~~~-----~~~~~~~~~ 220 (814)
..+-+||+.|++-..++. -++..+.+ +=|| |+||...+- .+.-..+-.
T Consensus 285 ~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmh 364 (457)
T KOG0743|consen 285 PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMH 364 (457)
T ss_pred CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeE
Confidence 345677888876431110 01111100 2244 567775543 222233456
Q ss_pred EEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHHHHhc
Q 003513 221 FKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIGRAMA 276 (814)
Q Consensus 221 ~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~ 276 (814)
+.+.-=+.+....|+..+.+... + ..++.+|.+...|.-+.=+.++..|-
T Consensus 365 I~mgyCtf~~fK~La~nYL~~~~---~---h~L~~eie~l~~~~~~tPA~V~e~lm 414 (457)
T KOG0743|consen 365 IYMGYCTFEAFKTLASNYLGIEE---D---HRLFDEIERLIEETEVTPAQVAEELM 414 (457)
T ss_pred EEcCCCCHHHHHHHHHHhcCCCC---C---cchhHHHHHHhhcCccCHHHHHHHHh
Confidence 88888999999999999987643 1 34555566666666555555555553
No 248
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.80 E-value=0.017 Score=62.64 Aligned_cols=136 Identities=18% Similarity=0.166 Sum_probs=81.1
Q ss_pred cchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCcc-CHHHHHHHHHHHhCCC
Q 003513 73 VGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDL-QLEKIQETIGKKIGLC 151 (814)
Q Consensus 73 vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~ 151 (814)
..|...+.++.+.+...+. ++.|.|+-++||||+++.+.... ... .+++..-+.. +...+ .
T Consensus 20 ~~~~~~~~~l~~~~~~~~~--i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~~~l-~--------- 81 (398)
T COG1373 20 IERRKLLPRLIKKLDLRPF--IILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDRIEL-L--------- 81 (398)
T ss_pred hhHHhhhHHHHhhcccCCc--EEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcchhhH-H---------
Confidence 3444555666665554422 99999999999999997777766 222 4444332211 11111 0
Q ss_pred CCCCCCCCHHHHHHHHHHHhccCceEEEEccccCccccccccccCCCCc--EEEEecCCcccccc------CCccceEEe
Q 003513 152 NDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWERVDLKKIGVPLPKNS--AVVFTTRFVDVCGG------MEARRMFKV 223 (814)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~~~~--~iiiTtR~~~~~~~------~~~~~~~~l 223 (814)
+....+.+.-..++..++||.|+...+|+.....+-... +|++|+-+...... .+-...+++
T Consensus 82 ----------d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~~v~itgsss~ll~~~~~~~L~GR~~~~~l 151 (398)
T COG1373 82 ----------DLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNLDVLITGSSSSLLSKEISESLAGRGKDLEL 151 (398)
T ss_pred ----------HHHHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccceEEEECCchhhhccchhhhcCCCceeEEE
Confidence 111111111112778999999999988887655443321 67887765544211 133567899
Q ss_pred ccCCHHhHHHHHH
Q 003513 224 ACLSDEDAWELFR 236 (814)
Q Consensus 224 ~~L~~~ea~~l~~ 236 (814)
.||+-.|-..+-.
T Consensus 152 ~PlSF~Efl~~~~ 164 (398)
T COG1373 152 YPLSFREFLKLKG 164 (398)
T ss_pred CCCCHHHHHhhcc
Confidence 9999999876543
No 249
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.80 E-value=0.0022 Score=65.18 Aligned_cols=133 Identities=17% Similarity=0.190 Sum_probs=73.1
Q ss_pred cchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEE-EEE---ECCc---------cCHHH
Q 003513 73 VGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVI-WVV---VSKD---------LQLEK 139 (814)
Q Consensus 73 vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~-wv~---~~~~---------~~~~~ 139 (814)
-+|..+..--.++|.++ .+..|.+.|.+|.|||-||.+..-.....++.|..++ .-. +.++ .-+.-
T Consensus 227 ~prn~eQ~~ALdlLld~-dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~P 305 (436)
T COG1875 227 RPRNAEQRVALDLLLDD-DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGP 305 (436)
T ss_pred CcccHHHHHHHHHhcCC-CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccc
Confidence 34666666667778877 8999999999999999888655433211233443222 111 1111 11222
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHH----------HHHhccC---ceEEEEccccCc--cccccccccCCCCcEEEE
Q 003513 140 IQETIGKKIGLCNDSWKNKSLEEKAHDI----------FKTLSKK---KFALLLDDLWER--VDLKKIGVPLPKNSAVVF 204 (814)
Q Consensus 140 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l----------~~~l~~~---~~LlVlDdv~~~--~~~~~~~~~~~~~~~iii 204 (814)
..+.|..-+..-... .... ...++.+ ..+++|+ +.++|+|.+.+. .++..+....+.|+||+.
T Consensus 306 Wmq~i~DnLE~L~~~-~~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTiltR~G~GsKIVl 383 (436)
T COG1875 306 WMQAIFDNLEVLFSP-NEPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILTRAGEGSKIVL 383 (436)
T ss_pred hHHHHHhHHHHHhcc-cccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHHhccCCCEEEE
Confidence 333443332211100 1111 2222222 1122343 568999999876 566677666778999998
Q ss_pred ecCC
Q 003513 205 TTRF 208 (814)
Q Consensus 205 TtR~ 208 (814)
|--.
T Consensus 384 ~gd~ 387 (436)
T COG1875 384 TGDP 387 (436)
T ss_pred cCCH
Confidence 8763
No 250
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.026 Score=62.27 Aligned_cols=160 Identities=18% Similarity=0.167 Sum_probs=87.4
Q ss_pred cccchhHHHHHHHHHHhc-----------C-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHH
Q 003513 71 TVVGLQSQLEQVWRCLVQ-----------E-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLE 138 (814)
Q Consensus 71 ~~vGr~~~~~~l~~~L~~-----------~-~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 138 (814)
++=|-++.+++|.+...- + ...+-|.++|++|.|||++|+++++.. .-.| +.++..
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nF-----lsvkgp---- 502 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNF-----LSVKGP---- 502 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCe-----eeccCH----
Confidence 333477766666654431 1 356789999999999999999999987 4444 222221
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCccccc-------------cc---cccCCC--Cc
Q 003513 139 KIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWERVDLK-------------KI---GVPLPK--NS 200 (814)
Q Consensus 139 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~-------------~~---~~~~~~--~~ 200 (814)
++ .... ...++..+.+.+.+.-+--+.++.||.++....-+ .+ ...+.. +.
T Consensus 503 EL----~sk~-------vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V 571 (693)
T KOG0730|consen 503 EL----FSKY-------VGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNV 571 (693)
T ss_pred HH----HHHh-------cCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcE
Confidence 11 1111 11222233333333334467899999986542111 11 111112 23
Q ss_pred EEEEecCCcc-c----cccCCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHH
Q 003513 201 AVVFTTRFVD-V----CGGMEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPEL 253 (814)
Q Consensus 201 ~iiiTtR~~~-~----~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~ 253 (814)
-||..|..+. + .+.-..+..+.++.-+.+--.++|+.++......++-+++++
T Consensus 572 ~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~L 629 (693)
T KOG0730|consen 572 LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEEL 629 (693)
T ss_pred EEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHH
Confidence 3343443332 2 121234567888877888888899999866553333334443
No 251
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.80 E-value=0.00085 Score=63.12 Aligned_cols=152 Identities=16% Similarity=0.205 Sum_probs=74.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHHHHHh
Q 003513 93 GIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKN-KSLEEKAHDIFKTL 171 (814)
Q Consensus 93 ~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~l~~~l 171 (814)
.++.|.|.+|+||||+|..++... .. .++++...... -.+..+.|..........+.. .....+...+....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~---~~---~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~ 74 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS---GL---QVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADA 74 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc---CC---CcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhc
Confidence 368999999999999999998875 21 23444433332 334445554333222222211 11122333343333
Q ss_pred ccCceEEEEccccCc----------cc----cccccccCC-CCcEEEEecCCccccccCCccceEEeccCCHHhHHHHHH
Q 003513 172 SKKKFALLLDDLWER----------VD----LKKIGVPLP-KNSAVVFTTRFVDVCGGMEARRMFKVACLSDEDAWELFR 236 (814)
Q Consensus 172 ~~~~~LlVlDdv~~~----------~~----~~~~~~~~~-~~~~iiiTtR~~~~~~~~~~~~~~~l~~L~~~ea~~l~~ 236 (814)
.+ .-++++|.+... .. +..+...+. .+..+|+|+.. +. .+..+.++.-+.|.
T Consensus 75 ~~-~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~~tvVlVs~E--vg----------~g~vp~~~~~r~~~ 141 (170)
T PRK05800 75 AP-GRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLPAKIILVTNE--VG----------MGIVPEYRLGRHFR 141 (170)
T ss_pred CC-CCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCCCCEEEEEcC--Cc----------ccccCCCHHHHHHH
Confidence 33 337889997322 11 111211122 25566777652 21 22334456666777
Q ss_pred HHhccccccCCCChHHHHHHHHHHcCCChHHH
Q 003513 237 EKVGEETIESHHSLPELAQTVAKECRGLPLAL 268 (814)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 268 (814)
...+... +.+...+.++..-..|+|+-+
T Consensus 142 d~lG~ln----q~la~~ad~V~~v~~Gi~~~l 169 (170)
T PRK05800 142 DIAGRLN----QQLAAAADEVYLVVAGLPLKL 169 (170)
T ss_pred HHHHHHH----HHHHHHCCEEEEEeCCCcEec
Confidence 7665433 222333344444445777644
No 252
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.78 E-value=0.0021 Score=67.28 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEE
Q 003513 93 GIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVV 131 (814)
Q Consensus 93 ~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 131 (814)
..+.++|..|+|||+||.++++... .....|+|+++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~---~~g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL---DRGKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEEH
Confidence 7799999999999999999999883 22335677654
No 253
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.77 E-value=0.009 Score=60.04 Aligned_cols=50 Identities=18% Similarity=0.210 Sum_probs=37.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHH
Q 003513 90 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETI 144 (814)
Q Consensus 90 ~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 144 (814)
+.-.++.|.|.+|+|||++|.++.... -..-+.++|++... +..++.+.+
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~---~~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEEeeC--CHHHHHHHH
Confidence 355799999999999999999987765 23356788888755 455555543
No 254
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.013 Score=64.84 Aligned_cols=158 Identities=19% Similarity=0.150 Sum_probs=89.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCcc--CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDL--QLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIF 168 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 168 (814)
....|.|.|+.|+|||+||+++++... ++..-.+.+++++.-. .++.+++.+- ..+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~-------------------~vfs 488 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLN-------------------NVFS 488 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHH-------------------HHHH
Confidence 346789999999999999999999983 5566677777776432 2333333322 2334
Q ss_pred HHhccCceEEEEccccCccc--------c-------c----cc-cccCCCCcE--EEEecCCccc-----cccCCccceE
Q 003513 169 KTLSKKKFALLLDDLWERVD--------L-------K----KI-GVPLPKNSA--VVFTTRFVDV-----CGGMEARRMF 221 (814)
Q Consensus 169 ~~l~~~~~LlVlDdv~~~~~--------~-------~----~~-~~~~~~~~~--iiiTtR~~~~-----~~~~~~~~~~ 221 (814)
+.+.-.+-++||||++-... + . ++ ......+.+ +|.|.....- ....-...+.
T Consensus 489 e~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~ 568 (952)
T KOG0735|consen 489 EALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVI 568 (952)
T ss_pred HHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEE
Confidence 45566889999999863311 0 0 11 011112444 3444442221 1112234467
Q ss_pred EeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCC-ChHHHHHHH
Q 003513 222 KVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRG-LPLALITIG 272 (814)
Q Consensus 222 ~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~ 272 (814)
.+..+...+-.++++....... .....+...-+..+|+| .|.-+.++-
T Consensus 569 ~L~ap~~~~R~~IL~~~~s~~~---~~~~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 569 ALPAPAVTRRKEILTTIFSKNL---SDITMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred ecCCcchhHHHHHHHHHHHhhh---hhhhhHHHHHHHHhcCCccchhHHHHH
Confidence 8888888887777766543322 11113333347778877 455444433
No 255
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.76 E-value=0.031 Score=63.11 Aligned_cols=46 Identities=20% Similarity=0.313 Sum_probs=38.2
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
.+++|.+..++.+...+... ....+.|+|+.|+|||++|+.+++..
T Consensus 65 ~~iiGqs~~i~~l~~al~~~-~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP-NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35899999999998877654 44567899999999999999998753
No 256
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.76 E-value=0.0023 Score=60.07 Aligned_cols=147 Identities=19% Similarity=0.325 Sum_probs=76.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcc
Q 003513 94 IIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLSK 173 (814)
Q Consensus 94 ~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 173 (814)
++.|.|.+|+|||++|.+++... ...++++......+.+ +.+.|..-.......+... +....+.+.+..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~------~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~---E~~~~l~~~l~~ 70 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL------GGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTI---ETPRDLVSALKE 70 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc------CCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEe---ecHHHHHHHHHh
Confidence 36799999999999999997653 2356777766666553 3444333222112222221 222334444422
Q ss_pred --CceEEEEccccCc------c-----------ccccccccCC-CCcEEEEecCCccccccCCccceEEeccCCHHhHHH
Q 003513 174 --KKFALLLDDLWER------V-----------DLKKIGVPLP-KNSAVVFTTRFVDVCGGMEARRMFKVACLSDEDAWE 233 (814)
Q Consensus 174 --~~~LlVlDdv~~~------~-----------~~~~~~~~~~-~~~~iiiTtR~~~~~~~~~~~~~~~l~~L~~~ea~~ 233 (814)
+.-.+++|.+... . .+..+...+. .+..+|++|. ++. .+..+.+..-+
T Consensus 71 ~~~~~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~~~~~~viVsn--EvG----------~g~vp~~~~~r 138 (169)
T cd00544 71 LDPGDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKPGTLILVSN--EVG----------LGVVPENALGR 138 (169)
T ss_pred cCCCCEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHcCCCcEEEEEC--CcC----------CCCCCCCHHHH
Confidence 3347999997321 0 0111212222 2566777765 332 23345566677
Q ss_pred HHHHHhccccccCCCChHHHHHHHHHHcCCChH
Q 003513 234 LFREKVGEETIESHHSLPELAQTVAKECRGLPL 266 (814)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 266 (814)
.|...++.-. +.+...+.+++.-..|+|+
T Consensus 139 ~f~d~lG~ln----q~la~~ad~v~~vv~Gip~ 167 (169)
T cd00544 139 RFRDELGRLN----QRLAALADEVYLVVSGIPL 167 (169)
T ss_pred HHHHHHHHHH----HHHHHHCCEEEEEECCcce
Confidence 7777766433 2223334444444457665
No 257
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.76 E-value=0.0077 Score=62.69 Aligned_cols=93 Identities=16% Similarity=0.196 Sum_probs=58.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccC---CCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCC-------CCCCCH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDN---PKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDS-------WKNKSL 160 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 160 (814)
.-+++-|+|++|+|||+|+.+++-..+.. ...-..++|++....++.+.+.+ ++++++...+. ....+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCH
Confidence 45788899999999999999877543110 12234799999998888888764 56666654321 011233
Q ss_pred HHHHH---HHHHHhc-cCceEEEEcccc
Q 003513 161 EEKAH---DIFKTLS-KKKFALLLDDLW 184 (814)
Q Consensus 161 ~~~~~---~l~~~l~-~~~~LlVlDdv~ 184 (814)
++... .+...+. ++--|+|+|.+.
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 43333 3333333 345588888874
No 258
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.74 E-value=0.013 Score=59.21 Aligned_cols=165 Identities=21% Similarity=0.247 Sum_probs=95.0
Q ss_pred CcccchhHHHHHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCcc-----CHHHHH
Q 003513 70 PTVVGLQSQLEQVWRCLVQE---PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDL-----QLEKIQ 141 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~---~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-----~~~~~~ 141 (814)
..++|-.++...+..++... +....|.|+|+.|.|||+|......+..+.+.+ .+-|...... .+..+.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~---~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGEN---FLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCe---EEEEEECccchhhHHHHHHHH
Confidence 35899999999998888652 456788899999999999998887775233333 3444443332 233444
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcc------CceEEEEccccCccc---------cccc-cccCCCCcEEEEe
Q 003513 142 ETIGKKIGLCNDSWKNKSLEEKAHDIFKTLSK------KKFALLLDDLWERVD---------LKKI-GVPLPKNSAVVFT 205 (814)
Q Consensus 142 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~------~~~LlVlDdv~~~~~---------~~~~-~~~~~~~~~iiiT 205 (814)
+++..++.... ....+..+....+.+.|+. -++++|+|..+--.. +-++ ...-.+-|-|-+|
T Consensus 101 rql~~e~~~~~--k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 101 RQLALELNRIV--KSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHhhhh--eeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 44444433221 1233444555566666642 368888888764311 1111 1111124667789
Q ss_pred cCCcc-------ccccCCccceEEeccCCHHhHHHHHHHHh
Q 003513 206 TRFVD-------VCGGMEARRMFKVACLSDEDAWELFREKV 239 (814)
Q Consensus 206 tR~~~-------~~~~~~~~~~~~l~~L~~~ea~~l~~~~~ 239 (814)
||-.- |-.+...-.++-++.++-++-..+++...
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 98432 22233223345566677777777777665
No 259
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.71 E-value=0.01 Score=62.20 Aligned_cols=93 Identities=15% Similarity=0.157 Sum_probs=58.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcc---CCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCC-------CCCCCH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVD---NPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDS-------WKNKSL 160 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 160 (814)
.-.+.-|+|.+|+|||+|+.+++-..+. ....-..++|++....++.+.+.+ ++++++...+. ....+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCH
Confidence 4578889999999999999988654311 112235889999999888888765 56666654321 112334
Q ss_pred HHHHHH---HHHHhc-cCceEEEEcccc
Q 003513 161 EEKAHD---IFKTLS-KKKFALLLDDLW 184 (814)
Q Consensus 161 ~~~~~~---l~~~l~-~~~~LlVlDdv~ 184 (814)
++.... +...+. .+--|||+|.+.
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 433332 323333 344578888864
No 260
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0075 Score=68.89 Aligned_cols=152 Identities=19% Similarity=0.230 Sum_probs=91.5
Q ss_pred cccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCC--C--CCCeEEEEEECCccCHHHHHHHHHH
Q 003513 71 TVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP--K--DFDYVIWVVVSKDLQLEKIQETIGK 146 (814)
Q Consensus 71 ~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~--~--~f~~~~wv~~~~~~~~~~~~~~i~~ 146 (814)
.++||+++++++++.|... .-.--.++|.+|+|||++|.-++.++.... . ....++-++ +. .
T Consensus 171 PvIGRd~EI~r~iqIL~RR-~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD------~g-------~ 236 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRR-TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD------LG-------S 236 (786)
T ss_pred CCcChHHHHHHHHHHHhcc-CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec------HH-------H
Confidence 3799999999999999764 111224789999999999999998873210 0 011111111 11 1
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHhcc-CceEEEEccccCcc----------cccccccc-CCCC-cEEEEecCCcccc-
Q 003513 147 KIGLCNDSWKNKSLEEKAHDIFKTLSK-KKFALLLDDLWERV----------DLKKIGVP-LPKN-SAVVFTTRFVDVC- 212 (814)
Q Consensus 147 ~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~~----------~~~~~~~~-~~~~-~~iiiTtR~~~~~- 212 (814)
..... ....+.++....+.+.++. .+++|.+|.+.... +...+..| +..| -++|-.|...+.-
T Consensus 237 LvAGa---kyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk 313 (786)
T COG0542 237 LVAGA---KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRK 313 (786)
T ss_pred Hhccc---cccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHH
Confidence 11111 1456777777777777653 58999999986531 11222233 3333 4555444322211
Q ss_pred ------ccCCccceEEeccCCHHhHHHHHHHHh
Q 003513 213 ------GGMEARRMFKVACLSDEDAWELFREKV 239 (814)
Q Consensus 213 ------~~~~~~~~~~l~~L~~~ea~~l~~~~~ 239 (814)
......+.+.+...+.+++.++++...
T Consensus 314 ~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 314 YIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 111234678999999999999998765
No 261
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.69 E-value=0.07 Score=55.70 Aligned_cols=49 Identities=20% Similarity=0.171 Sum_probs=36.1
Q ss_pred eEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHH
Q 003513 220 MFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLAL 268 (814)
Q Consensus 220 ~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 268 (814)
++++++++.+|+..++.-+....-.......+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999888754442222344566677777779999754
No 262
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.69 E-value=0.00039 Score=67.33 Aligned_cols=84 Identities=23% Similarity=0.268 Sum_probs=50.4
Q ss_pred CCCcccEEEcccCCCccccc----hhhccCCcccEEEccCCccc----cccCc-------ccccccccCEEEecCCCCc-
Q 003513 447 TCPHLLTLFLNRNPLRTITG----GFFQSMSCLTVLKMSDNIML----RQLPM-------GISKLVSLQLLDISNTSVT- 510 (814)
Q Consensus 447 ~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~L~~~~~~----~~lp~-------~i~~l~~L~~L~l~~~~l~- 510 (814)
.+..+..++|++|.+..-.. ..+.+-++|++.+++.- .. .++|+ .+-+|++|+..+||.|-+.
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 46677788888887543222 22455677888877764 11 12332 3446677777777777554
Q ss_pred ccC----hhhhcCCCCceecccccc
Q 003513 511 ELP----EDLKALVNLKCLNLVWAK 531 (814)
Q Consensus 511 ~lp----~~i~~l~~L~~L~l~~~~ 531 (814)
+.| ..+.+-..|.||.+++|.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCC
Confidence 333 334566777777777764
No 263
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.68 E-value=0.004 Score=62.65 Aligned_cols=93 Identities=19% Similarity=0.345 Sum_probs=56.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCC-eEEEEEECCc-cCHHHHHHHHHHHhCCCC-----CCCCCCCHHH-
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFD-YVIWVVVSKD-LQLEKIQETIGKKIGLCN-----DSWKNKSLEE- 162 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~- 162 (814)
.-+.++|.|.+|+||||||+++++.. ..+|+ .++++-+.+. ..+.++.+.+.+.-.... ...+.....+
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 34678999999999999999999988 33444 4455555443 345666666654321111 0011111111
Q ss_pred ----HHHHHHHHh--c-cCceEEEEccccCc
Q 003513 163 ----KAHDIFKTL--S-KKKFALLLDDLWER 186 (814)
Q Consensus 163 ----~~~~l~~~l--~-~~~~LlVlDdv~~~ 186 (814)
..-.+.+++ + ++.+|+|+||+...
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 122345555 3 88999999998654
No 264
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.66 E-value=0.0069 Score=72.58 Aligned_cols=62 Identities=26% Similarity=0.311 Sum_probs=46.2
Q ss_pred CcccchhHHHHHHHHHHhcC--------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCc
Q 003513 70 PTVVGLQSQLEQVWRCLVQE--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKD 134 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~--------~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 134 (814)
..++|.+..++.+...+... ....++.++|+.|+|||++|+.++... .......+.++.+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l---~~~~~~~i~~d~s~~ 634 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL---FDDEDAMVRIDMSEY 634 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---cCCCCcEEEEechhh
Confidence 45899999999999988641 124578899999999999999999886 333344555665543
No 265
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.66 E-value=0.013 Score=58.95 Aligned_cols=89 Identities=16% Similarity=0.229 Sum_probs=57.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCC---------------
Q 003513 90 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDS--------------- 154 (814)
Q Consensus 90 ~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--------------- 154 (814)
+.-.++.|+|.+|+|||++|.+++.... ..-..++|++.... ..++.+.+ ++++.....
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~---~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~ 96 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGAL---KQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTE 96 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHH---hCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccc
Confidence 3567999999999999999999977652 23467889988654 45555553 334332210
Q ss_pred ---CCCCCHHHHHHHHHHHhcc-CceEEEEcccc
Q 003513 155 ---WKNKSLEEKAHDIFKTLSK-KKFALLLDDLW 184 (814)
Q Consensus 155 ---~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 184 (814)
......+.....+.+.++. +.-++|+|.+.
T Consensus 97 ~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 97 GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0122345566666666654 56689999875
No 266
>PRK06696 uridine kinase; Validated
Probab=96.63 E-value=0.0029 Score=62.96 Aligned_cols=43 Identities=12% Similarity=0.235 Sum_probs=36.7
Q ss_pred chhHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 74 GLQSQLEQVWRCLVQ--EPAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 74 Gr~~~~~~l~~~L~~--~~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
.|++.+++|.+.+.. .+...+|+|.|.+|+||||+|+.++...
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 477788888888764 3467899999999999999999999987
No 267
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.63 E-value=0.029 Score=58.85 Aligned_cols=66 Identities=18% Similarity=0.153 Sum_probs=38.9
Q ss_pred cCceEEEEccccCcc-----ccccccccCCCCcEEEEecCCcc-cccc-CCccceEEeccCCHHhHHHHHHHH
Q 003513 173 KKKFALLLDDLWERV-----DLKKIGVPLPKNSAVVFTTRFVD-VCGG-MEARRMFKVACLSDEDAWELFREK 238 (814)
Q Consensus 173 ~~~~LlVlDdv~~~~-----~~~~~~~~~~~~~~iiiTtR~~~-~~~~-~~~~~~~~l~~L~~~ea~~l~~~~ 238 (814)
+++-++|+|+++... .+.++....+.+..+|++|.+.. +... ......+.+.+++.+++.+.+.+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 344456668876431 12222232344666777776554 3221 123467899999999999888654
No 268
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.61 E-value=0.02 Score=66.20 Aligned_cols=149 Identities=15% Similarity=0.103 Sum_probs=82.4
Q ss_pred cccchhHHHHHHHHHH---hcC--------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHH
Q 003513 71 TVVGLQSQLEQVWRCL---VQE--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEK 139 (814)
Q Consensus 71 ~~vGr~~~~~~l~~~L---~~~--------~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 139 (814)
++.|.+...+++.+.. ... .-.+-|.|+|++|.|||++|+.++... ...| +.+..+.
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~~------ 220 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSD------ 220 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehHH------
Confidence 4567766665555443 221 113458999999999999999999887 3333 2222211
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCccc----------------ccccc---ccCCC--
Q 003513 140 IQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWERVD----------------LKKIG---VPLPK-- 198 (814)
Q Consensus 140 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------------~~~~~---~~~~~-- 198 (814)
+.... .+ .........+.......+.+|+||+++.... +..+. ..+..
T Consensus 221 ~~~~~---~g--------~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~ 289 (644)
T PRK10733 221 FVEMF---VG--------VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 289 (644)
T ss_pred hHHhh---hc--------ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC
Confidence 11110 01 1122222333333345788999999875411 11111 11111
Q ss_pred CcEEEEecCCcccccc-----CCccceEEeccCCHHhHHHHHHHHhccc
Q 003513 199 NSAVVFTTRFVDVCGG-----MEARRMFKVACLSDEDAWELFREKVGEE 242 (814)
Q Consensus 199 ~~~iiiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~ 242 (814)
+.-+|.||........ -..+..+.++..+.++-.++++.+....
T Consensus 290 ~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~ 338 (644)
T PRK10733 290 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV 338 (644)
T ss_pred CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC
Confidence 4455567765553221 1235678888888888888888877543
No 269
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.61 E-value=0.0093 Score=60.20 Aligned_cols=75 Identities=23% Similarity=0.282 Sum_probs=46.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKT 170 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 170 (814)
...-+.++|.+|+|||.||.+++++.. ..--.+.+++ ..++...+.....-. . ....+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~---~~g~sv~f~~------~~el~~~Lk~~~~~~-------~---~~~~l~~~ 164 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL---KAGISVLFIT------APDLLSKLKAAFDEG-------R---LEEKLLRE 164 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH---HcCCeEEEEE------HHHHHHHHHHHHhcC-------c---hHHHHHHH
Confidence 456789999999999999999999983 3333566664 445566665544311 1 11122222
Q ss_pred hccCceEEEEccccC
Q 003513 171 LSKKKFALLLDDLWE 185 (814)
Q Consensus 171 l~~~~~LlVlDdv~~ 185 (814)
++ +-=||||||+-.
T Consensus 165 l~-~~dlLIiDDlG~ 178 (254)
T COG1484 165 LK-KVDLLIIDDIGY 178 (254)
T ss_pred hh-cCCEEEEecccC
Confidence 22 234899999843
No 270
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.61 E-value=0.00097 Score=64.86 Aligned_cols=104 Identities=26% Similarity=0.284 Sum_probs=59.7
Q ss_pred CCCcccEEEcccCCCccccchhhccCCcccEEEccCC--ccccccCcccccccccCEEEecCCCCc---ccChhhhcCCC
Q 003513 447 TCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDN--IMLRQLPMGISKLVSLQLLDISNTSVT---ELPEDLKALVN 521 (814)
Q Consensus 447 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~--~~~~~lp~~i~~l~~L~~L~l~~~~l~---~lp~~i~~l~~ 521 (814)
.+..|..|++.+..++.+.. |..+++|++|.++.| +....++....++++|++|++++|+++ +++ .+..+.+
T Consensus 41 ~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELEN 117 (260)
T ss_pred cccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcc
Confidence 34455556666655443332 456777777777777 444455555556677777777777655 332 3556677
Q ss_pred CceeccccccccceeC---ccccCCCcccceeeccc
Q 003513 522 LKCLNLVWAKELVVVP---QQLLSNFSRLRVLRMFA 554 (814)
Q Consensus 522 L~~L~l~~~~~l~~~p---~~~i~~l~~L~~L~l~~ 554 (814)
|..|++.+|.... +- ..++.-+++|.+|+-..
T Consensus 118 L~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 118 LKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhhcccCCccc-cccHHHHHHHHhhhhccccccc
Confidence 7777777764322 21 12234455666665543
No 271
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.61 E-value=0.0056 Score=72.82 Aligned_cols=47 Identities=26% Similarity=0.382 Sum_probs=39.1
Q ss_pred CcccchhHHHHHHHHHHhc------C--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 70 PTVVGLQSQLEQVWRCLVQ------E--PAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~------~--~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
..++|.+..++.+.+.+.. + ....++.++|+.|+|||.+|++++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999888742 1 234578999999999999999998887
No 272
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.00024 Score=69.09 Aligned_cols=86 Identities=23% Similarity=0.183 Sum_probs=50.8
Q ss_pred CCcccEEEcccCCCccccchhhccCCcccEEEccCCccccccCcccccccccCEEEecCCCCcccC--hhhhcCCCCcee
Q 003513 448 CPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLPMGISKLVSLQLLDISNTSVTELP--EDLKALVNLKCL 525 (814)
Q Consensus 448 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L 525 (814)
+.+.+.|+.++|.+.++. +..+|+.|++|.||-| .++.+. .+..|.+|+.|+|+.|.|..+- .-+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeecc-ccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 445566667777665543 2556777777777776 555554 4556666666666666655442 234566666666
Q ss_pred ccccccccceeC
Q 003513 526 NLVWAKELVVVP 537 (814)
Q Consensus 526 ~l~~~~~l~~~p 537 (814)
-|..|...+..+
T Consensus 94 WL~ENPCc~~ag 105 (388)
T KOG2123|consen 94 WLDENPCCGEAG 105 (388)
T ss_pred hhccCCcccccc
Confidence 666655444433
No 273
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.00024 Score=68.98 Aligned_cols=94 Identities=23% Similarity=0.367 Sum_probs=60.0
Q ss_pred EEEcCCCcccCCCCccCcccEEEEEcccCCCcCCCCCCCCCcccEEEcccCCCccccc-hhhccCCcccEEEccCCcccc
Q 003513 409 LVYAGSGLTKAPADVRGWEMVRRLSLMKNSIENLPTVPTCPHLLTLFLNRNPLRTITG-GFFQSMSCLTVLKMSDNIMLR 487 (814)
Q Consensus 409 l~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~ 487 (814)
+..-|.++.++ +-...++.|++|+|+-|.+..+.++..|++|+.|.|..|.+..+.. ..+.++|+||.|-|..|+...
T Consensus 24 LNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 24 LNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCG 102 (388)
T ss_pred hcccCCCccHH-HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCccc
Confidence 33445556555 4455667777888887887777777778888888887777655532 235677777777777764444
Q ss_pred ccCc-----ccccccccCEEE
Q 003513 488 QLPM-----GISKLVSLQLLD 503 (814)
Q Consensus 488 ~lp~-----~i~~l~~L~~L~ 503 (814)
.-+. .+..|++|+.||
T Consensus 103 ~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 103 EAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccchhHHHHHHHHcccchhcc
Confidence 3322 244556666554
No 274
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.56 E-value=0.014 Score=60.70 Aligned_cols=113 Identities=20% Similarity=0.196 Sum_probs=64.0
Q ss_pred chhHHHHHHHHHHhc---CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCC
Q 003513 74 GLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGL 150 (814)
Q Consensus 74 Gr~~~~~~l~~~L~~---~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 150 (814)
+|....+...+++.. ++..+-+.|+|..|+|||.||.++++... ..-..+.++++ ..+...+....+.
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~---~~g~~v~~~~~------~~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA---KKGVSSTLLHF------PEFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCEEEEEH------HHHHHHHHHHHhc
Confidence 455555555555543 12346799999999999999999999983 22234566654 3455555544321
Q ss_pred CCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCc--cccc--cccccC-----CCCcEEEEecC
Q 003513 151 CNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWER--VDLK--KIGVPL-----PKNSAVVFTTR 207 (814)
Q Consensus 151 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~--~~~~~~-----~~~~~iiiTtR 207 (814)
.+..+ ..+.++ +-=||||||+-.. .+|. .+...+ ..+..+|+||.
T Consensus 206 -------~~~~~----~l~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 206 -------GSVKE----KIDAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred -------CcHHH----HHHHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 12222 222222 4458999998533 2222 121111 23567888887
No 275
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.55 E-value=0.0078 Score=64.19 Aligned_cols=86 Identities=23% Similarity=0.357 Sum_probs=52.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSW---KNKSLEEKAHDI 167 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 167 (814)
.-.++.|.|.+|+|||||+.+++.... .....++|++.... ..++. .-+++++...+.. ...+.++....+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 346999999999999999999998872 33356888876443 34432 2245565433221 122333333322
Q ss_pred HHHhccCceEEEEccccC
Q 003513 168 FKTLSKKKFALLLDDLWE 185 (814)
Q Consensus 168 ~~~l~~~~~LlVlDdv~~ 185 (814)
. +.+.-++|+|.+..
T Consensus 155 ~---~~~~~lVVIDSIq~ 169 (372)
T cd01121 155 E---ELKPDLVIIDSIQT 169 (372)
T ss_pred H---hcCCcEEEEcchHH
Confidence 1 23667899999753
No 276
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.026 Score=60.41 Aligned_cols=46 Identities=26% Similarity=0.320 Sum_probs=36.3
Q ss_pred cccchh---HHHHHHHHHHhcC-------CC-ceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 71 TVVGLQ---SQLEQVWRCLVQE-------PA-AGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 71 ~~vGr~---~~~~~l~~~L~~~-------~~-~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
++-|-| .++++|++.|.+. ++ .+-|.++|++|.|||-||++++-+.
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 355655 4678888888763 22 4678899999999999999999987
No 277
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.54 E-value=0.0068 Score=58.24 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=48.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKT 170 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 170 (814)
.+.+|+|.|.+|+||||+|+.++..+ +...-.+ ++.. ++-...-.....+......+....-+.+-....|...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~---~~~~~~~--I~~D-~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL---GVEKVVV--ISLD-DYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh---CcCcceE--eecc-ccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 45799999999999999999999998 3332222 2111 1111111222222333333444556677777888888
Q ss_pred hccCc
Q 003513 171 LSKKK 175 (814)
Q Consensus 171 l~~~~ 175 (814)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88877
No 278
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.54 E-value=0.0099 Score=56.57 Aligned_cols=88 Identities=20% Similarity=0.165 Sum_probs=47.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCcc-CHHHHHHHHHHHhCCCCCC-CCCCCHHHHHHH-HHHH
Q 003513 94 IIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDL-QLEKIQETIGKKIGLCNDS-WKNKSLEEKAHD-IFKT 170 (814)
Q Consensus 94 ~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~-l~~~ 170 (814)
++.++|++|+||||+++.++.... ..-..++.++..... ...+.+...++..+++... ....+..+.... +...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~---~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK---KKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHA 78 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH---HCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 678999999999999999998872 222345555543221 2233344444554432111 122344444333 3333
Q ss_pred hccCceEEEEcccc
Q 003513 171 LSKKKFALLLDDLW 184 (814)
Q Consensus 171 l~~~~~LlVlDdv~ 184 (814)
..+..-++|+|-.-
T Consensus 79 ~~~~~d~viiDt~g 92 (173)
T cd03115 79 REENFDVVIVDTAG 92 (173)
T ss_pred HhCCCCEEEEECcc
Confidence 34444456677754
No 279
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.50 E-value=0.019 Score=58.24 Aligned_cols=125 Identities=14% Similarity=0.069 Sum_probs=69.5
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEE---ECCccCHHHHHHHHHHHhC-CCCCC
Q 003513 79 LEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVV---VSKDLQLEKIQETIGKKIG-LCNDS 154 (814)
Q Consensus 79 ~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~---~~~~~~~~~~~~~i~~~l~-~~~~~ 154 (814)
.+.+...|.+.+....++|.|+.|.|||||++.++... . ...+.+++. +.......++ +.... .....
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~---~-~~~G~i~~~g~~v~~~d~~~ei----~~~~~~~~q~~ 169 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARIL---S-TGISQLGLRGKKVGIVDERSEI----AGCVNGVPQHD 169 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCcc---C-CCCceEEECCEEeecchhHHHH----HHHhccccccc
Confidence 34445555544456789999999999999999999887 2 223344442 2111112223 22221 11110
Q ss_pred -C---CCCCHHHHHHHHHHHhc-cCceEEEEccccCccccccccccCCCCcEEEEecCCccc
Q 003513 155 -W---KNKSLEEKAHDIFKTLS-KKKFALLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDV 211 (814)
Q Consensus 155 -~---~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~~~~~~~~~~~~~~~iiiTtR~~~~ 211 (814)
. +..+.......+...+. ..+=++|+|.+...+.+..+......|..+|+||-+..+
T Consensus 170 ~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 170 VGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALHAGVSIIATAHGRDV 231 (270)
T ss_pred ccccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEechhHH
Confidence 0 00011111223344433 578899999987766555554444458889999986544
No 280
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.49 E-value=0.02 Score=60.32 Aligned_cols=59 Identities=20% Similarity=0.319 Sum_probs=42.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCC---CCCCeEEEEEECCccCHHHHHHHHHHHhCC
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNP---KDFDYVIWVVVSKDLQLEKIQETIGKKIGL 150 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 150 (814)
.-.++-|+|++|+|||+++.+++....... ..-..++|++....++.+.+.+ +++.++.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~ 162 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGL 162 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCC
Confidence 457889999999999999999987652111 1114899999988888777654 3445543
No 281
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.48 E-value=0.0063 Score=58.10 Aligned_cols=37 Identities=24% Similarity=0.464 Sum_probs=30.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEE
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVV 130 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~ 130 (814)
...+|.+.|+.|+||||+|+.++... ...+..+++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEe
Confidence 34699999999999999999999988 44555666663
No 282
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.47 E-value=0.022 Score=61.89 Aligned_cols=89 Identities=24% Similarity=0.227 Sum_probs=52.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCc-cCHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKD-LQLEKIQETIGKKIGLCNDSW-KNKSLEEKAHDIF 168 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 168 (814)
...+|.++|.+|+||||+|..++..+. . ..+ .+..+++... ....+.++.++.+++++.... ...+....+....
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~-~-~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK-K-KGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-H-cCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 367999999999999999999998872 2 222 4444544321 123455666777776643211 1223334344444
Q ss_pred HHhccCceEEEEccc
Q 003513 169 KTLSKKKFALLLDDL 183 (814)
Q Consensus 169 ~~l~~~~~LlVlDdv 183 (814)
+..++. -++|+|..
T Consensus 171 ~~~~~~-DvVIIDTA 184 (437)
T PRK00771 171 EKFKKA-DVIIVDTA 184 (437)
T ss_pred HHhhcC-CEEEEECC
Confidence 444444 56888876
No 283
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.46 E-value=0.028 Score=58.14 Aligned_cols=136 Identities=15% Similarity=0.151 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHhcCCccccccCCCCcccccccCCCCCcccchhHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHH
Q 003513 32 KVVKRLRDVKALKGEGVFEEVAAPDPELISAADERPTEPTVVGLQSQLEQVWRCLVQE--PAAGIIGLYGMGGVGKTTLL 109 (814)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~i~i~G~gGiGKTtLa 109 (814)
.+..++.+++.-.+++.+-....... ....... ++ | ...|-..|..+ +.-+++-|+|+.|+||||||
T Consensus 2 ~l~~~~~~i~k~~g~~~i~~lg~~~~--~~~~~~i--~T---G----~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLa 70 (322)
T PF00154_consen 2 ALEKALKQIEKKFGKGSIMRLGDNAE--SQNIEVI--ST---G----SPALDYALGIGGLPRGRIVEIYGPESSGKTTLA 70 (322)
T ss_dssp HHHHHHHHHHHHHTTTSSEETTS-C---GCSS-EE-------S-----HHHHHHTSSSSEETTSEEEEEESTTSSHHHHH
T ss_pred hHHHHHHHHHHHhCCCceeecCCccc--ccccceE--ec---C----CcccchhhccCccccCceEEEeCCCCCchhhhH
Confidence 45677888888888774432222111 0001111 11 2 12222334323 34579999999999999999
Q ss_pred HHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHHHHHhccC-ceEEEEccccC
Q 003513 110 TQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSW---KNKSLEEKAHDIFKTLSKK-KFALLLDDLWE 185 (814)
Q Consensus 110 ~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~ 185 (814)
..+.... ......++|++....++. ..++.+|+..+.. ..+..++..+.+.+.++.. --++|+|-|-.
T Consensus 71 L~~ia~~---q~~g~~~a~ID~e~~ld~-----~~a~~lGvdl~rllv~~P~~~E~al~~~e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 71 LHAIAEA---QKQGGICAFIDAEHALDP-----EYAESLGVDLDRLLVVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHHH---HHTT-EEEEEESSS---H-----HHHHHTT--GGGEEEEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT
T ss_pred HHHHHhh---hcccceeEEecCcccchh-----hHHHhcCccccceEEecCCcHHHHHHHHHHHhhcccccEEEEecCcc
Confidence 9998877 233467899998776554 3445556544321 2445677777777777543 45889999854
Q ss_pred c
Q 003513 186 R 186 (814)
Q Consensus 186 ~ 186 (814)
.
T Consensus 143 l 143 (322)
T PF00154_consen 143 L 143 (322)
T ss_dssp -
T ss_pred c
Confidence 4
No 284
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.45 E-value=0.036 Score=61.77 Aligned_cols=55 Identities=24% Similarity=0.390 Sum_probs=42.4
Q ss_pred cccchhHHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEE
Q 003513 71 TVVGLQSQLEQVWRCLVQE----PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVV 130 (814)
Q Consensus 71 ~~vGr~~~~~~l~~~L~~~----~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~ 130 (814)
+++--.+-++++..||... ...+++.++|++|+||||.++.++++. .|+.+=|..
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 3444566788888888652 346799999999999999999999986 466666764
No 285
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.45 E-value=0.02 Score=58.11 Aligned_cols=27 Identities=33% Similarity=0.399 Sum_probs=25.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 90 PAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 90 ~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
.+..+|.|.|.+|.|||||+..+....
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999999987
No 286
>PRK10867 signal recognition particle protein; Provisional
Probab=96.43 E-value=0.023 Score=61.64 Aligned_cols=91 Identities=16% Similarity=0.224 Sum_probs=47.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCcc-CHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDL-QLEKIQETIGKKIGLCNDSW-KNKSLEEKAHDIF 168 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 168 (814)
...+|.++|++|+||||.|..++..+.+ . .-..+..|++.... ...+-++..++..+++.-.. ...++........
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~-~-~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKK-K-KKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH-h-cCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH
Confidence 3679999999999999999998887721 1 12334555443221 11223344555555432110 1223444443333
Q ss_pred HHhccCce-EEEEccc
Q 003513 169 KTLSKKKF-ALLLDDL 183 (814)
Q Consensus 169 ~~l~~~~~-LlVlDdv 183 (814)
+..+.+.+ ++|+|-.
T Consensus 177 ~~a~~~~~DvVIIDTa 192 (433)
T PRK10867 177 EEAKENGYDVVIVDTA 192 (433)
T ss_pred HHHHhcCCCEEEEeCC
Confidence 33333333 5555554
No 287
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.43 E-value=0.0043 Score=67.17 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=39.7
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
..++||++.++.+...+..+ ..|.|.|++|+|||++|+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag---~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG---ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccC---CCEEEECCCChhHHHHHHHHHHHh
Confidence 35899999999999998877 678899999999999999999876
No 288
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.40 E-value=0.018 Score=60.13 Aligned_cols=61 Identities=16% Similarity=0.229 Sum_probs=41.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhcc---CCCCCCeEEEEEECCccCHHHHHHHHHHHhCCC
Q 003513 90 PAAGIIGLYGMGGVGKTTLLTQINNKFVD---NPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLC 151 (814)
Q Consensus 90 ~~~~~i~i~G~gGiGKTtLa~~~~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 151 (814)
..-.++.|+|.+|+|||||+..++..... ....-..++|++....+....+ ..+++.++..
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~ 157 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLN 157 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCC
Confidence 35679999999999999999988764311 1112246799998887777664 3455555543
No 289
>PTZ00035 Rad51 protein; Provisional
Probab=96.39 E-value=0.026 Score=59.52 Aligned_cols=95 Identities=17% Similarity=0.201 Sum_probs=56.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhcc---CCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCC-------CCCCC
Q 003513 90 PAAGIIGLYGMGGVGKTTLLTQINNKFVD---NPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDS-------WKNKS 159 (814)
Q Consensus 90 ~~~~~i~i~G~gGiGKTtLa~~~~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 159 (814)
..-.++.|+|..|+|||||+..++-.... ....-..++|++....++.+.+ .+++++.+...+. ....+
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~ 194 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYN 194 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCC
Confidence 34679999999999999999988765410 1112346789998877777664 3445555543210 01223
Q ss_pred HHHHHHHH---HHHhc-cCceEEEEccccC
Q 003513 160 LEEKAHDI---FKTLS-KKKFALLLDDLWE 185 (814)
Q Consensus 160 ~~~~~~~l---~~~l~-~~~~LlVlDdv~~ 185 (814)
.++....+ .+.+. .+--|||+|-+..
T Consensus 195 ~e~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 195 HEHQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 33333333 22332 3456888888743
No 290
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.073 Score=60.68 Aligned_cols=171 Identities=15% Similarity=0.135 Sum_probs=100.8
Q ss_pred cccchhHHH---HHHHHHHhcC--------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHH
Q 003513 71 TVVGLQSQL---EQVWRCLVQE--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEK 139 (814)
Q Consensus 71 ~~vGr~~~~---~~l~~~L~~~--------~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 139 (814)
++.|-|+.+ +++++.|... .-.+=+.++|++|.|||-||++++-+. . |=|+.++..
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA---g-----VPF~svSGS----- 378 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---G-----VPFFSVSGS----- 378 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc---C-----CceeeechH-----
Confidence 567877654 5555566542 235678899999999999999999987 2 334444432
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-ccCceEEEEccccCccccc-----------------ccc---ccCCC
Q 003513 140 IQETIGKKIGLCNDSWKNKSLEEKAHDIFKTL-SKKKFALLLDDLWERVDLK-----------------KIG---VPLPK 198 (814)
Q Consensus 140 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~~~-----------------~~~---~~~~~ 198 (814)
+..+.+... . ...+..+...- +..+.++.+|+++...--+ ++. ..+..
T Consensus 379 ---EFvE~~~g~-------~-asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 379 ---EFVEMFVGV-------G-ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred ---HHHHHhccc-------c-hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 222222111 0 22333333333 3467899999987542211 111 11111
Q ss_pred --CcEEEEecCCccccc-----cCCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHH
Q 003513 199 --NSAVVFTTRFVDVCG-----GMEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLAL 268 (814)
Q Consensus 199 --~~~iiiTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 268 (814)
+.-++-+|+...+.+ .-.-+..+.++.-+..+-.++|.-++...... .+..++++ |+...-|.+=|.
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHHH
Confidence 333444665555532 22345678888888999999999888655422 34456666 888888887553
No 291
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.38 E-value=0.03 Score=64.66 Aligned_cols=134 Identities=15% Similarity=0.131 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHhcCCccccccCCCCcccccccCCCCCcccchhHHHHHHHHHHh-cC-CCceEEEEEcCCCCcHHHHH
Q 003513 32 KVVKRLRDVKALKGEGVFEEVAAPDPELISAADERPTEPTVVGLQSQLEQVWRCLV-QE-PAAGIIGLYGMGGVGKTTLL 109 (814)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~-~~-~~~~~i~i~G~gGiGKTtLa 109 (814)
.+.+++.+++...+++.+-....... ..... .+ .|- ..|-..|. .+ ..-+++-|+|++|+||||||
T Consensus 10 ~~~~~~~~~~~~~g~~~~~~l~~~~~---~~v~~--is---TGi----~~LD~lLg~GGip~GsiteI~G~~GsGKTtLa 77 (790)
T PRK09519 10 ALELAVAQIEKSYGKGSVMRLGDEAR---QPISV--IP---TGS----IALDVALGIGGLPRGRVIEIYGPESSGKTTVA 77 (790)
T ss_pred HHHHHHHHHHHHhccchhcccccccc---cCCce--ec---CCc----HHHHHhhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 46677778887777774432221111 00100 01 222 22223343 22 34678999999999999999
Q ss_pred HHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHHHHHhcc-CceEEEEccccC
Q 003513 110 TQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDS---WKNKSLEEKAHDIFKTLSK-KKFALLLDDLWE 185 (814)
Q Consensus 110 ~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~ 185 (814)
.+++.... ..-..++|++....++. ..++++|+..+. ......++....+.+.++. +.-|+|+|.+..
T Consensus 78 l~~~~~a~---~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~a 149 (790)
T PRK09519 78 LHAVANAQ---AAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDIVVIDSVAA 149 (790)
T ss_pred HHHHHHHH---HcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCCeEEEEcchhh
Confidence 88776652 23356899988776663 367777765432 1334556666666666544 567999999853
No 292
>PRK04328 hypothetical protein; Provisional
Probab=96.36 E-value=0.016 Score=58.62 Aligned_cols=41 Identities=17% Similarity=0.138 Sum_probs=32.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCc
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKD 134 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 134 (814)
.-.++.|.|.+|.|||+||.+++... ...-+.++|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCC
Confidence 45799999999999999999987765 233456888887654
No 293
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.11 Score=58.54 Aligned_cols=93 Identities=20% Similarity=0.253 Sum_probs=60.8
Q ss_pred cccchhHHHHHHHHHHhc----------C-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHH
Q 003513 71 TVVGLQSQLEQVWRCLVQ----------E-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEK 139 (814)
Q Consensus 71 ~~vGr~~~~~~l~~~L~~----------~-~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 139 (814)
++=|.++.+.+|.+-+.- + ....-|.++|++|.|||-+|++|+.+. . .-|+.|..+ +
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc---s-----L~FlSVKGP----E 740 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC---S-----LNFLSVKGP----E 740 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc---e-----eeEEeecCH----H
Confidence 345788888888877642 1 235578899999999999999999998 3 345555443 1
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCc
Q 003513 140 IQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWER 186 (814)
Q Consensus 140 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 186 (814)
+++.- +| .+++.+.+.+.+.-..++++|.||.++..
T Consensus 741 LLNMY---VG--------qSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 741 LLNMY---VG--------QSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHHHH---hc--------chHHHHHHHHHHhhccCCeEEEecccccc
Confidence 22221 11 23333344444444568999999999764
No 294
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.35 E-value=0.034 Score=48.42 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=36.0
Q ss_pred cccchhHHHHHHHHHHhc----C--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 71 TVVGLQSQLEQVWRCLVQ----E--PAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 71 ~~vGr~~~~~~l~~~L~~----~--~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
.++|.+-..+.+.+.+.+ . ++.-|++++|+.|+|||.+++.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 578877666666666643 2 356699999999999999999999884
No 295
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.35 E-value=0.019 Score=55.23 Aligned_cols=47 Identities=28% Similarity=0.449 Sum_probs=38.1
Q ss_pred CcccchhHHHHHHHHHHh---cCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 70 PTVVGLQSQLEQVWRCLV---QEPAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~---~~~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
..++|-|...+.+++--. .+....-|.+||.-|.|||.|++++.+.+
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 458999988888876542 33345678899999999999999999998
No 296
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.32 E-value=0.15 Score=52.66 Aligned_cols=168 Identities=15% Similarity=0.088 Sum_probs=93.8
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhcc-------CCCCCCeEEEEEE-CCccCHHHHHHHHHHHhC
Q 003513 78 QLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVD-------NPKDFDYVIWVVV-SKDLQLEKIQETIGKKIG 149 (814)
Q Consensus 78 ~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~-------~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~ 149 (814)
.++.+.+.+..+.-.++..++|..|.||+++|..+++...- ...+-+.+.+++. .....++++. .+.+.+.
T Consensus 4 ~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~ 82 (299)
T PRK07132 4 WIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLY 82 (299)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhc
Confidence 34455556655534566679999999999999999888611 1112223333321 1222233332 2222221
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCccc-----cccccccCCCCcEEEEecC-Ccccccc-CCccceEE
Q 003513 150 LCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWERVD-----LKKIGVPLPKNSAVVFTTR-FVDVCGG-MEARRMFK 222 (814)
Q Consensus 150 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-----~~~~~~~~~~~~~iiiTtR-~~~~~~~-~~~~~~~~ 222 (814)
... .-.+++-++|+|+++.... +.++..-.|+++.+|++|. ...+... ......++
T Consensus 83 ~~~-----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~ 145 (299)
T PRK07132 83 FSS-----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFN 145 (299)
T ss_pred cCC-----------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEE
Confidence 110 0014777899999865422 3333344455677766554 3333322 23467899
Q ss_pred eccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHH
Q 003513 223 VACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIG 272 (814)
Q Consensus 223 l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 272 (814)
+.++++++..+.+... + . + ++.+..++...+|.-.|+..+.
T Consensus 146 f~~l~~~~l~~~l~~~-~-~----~---~~~a~~~a~~~~~~~~a~~~~~ 186 (299)
T PRK07132 146 VKEPDQQKILAKLLSK-N-K----E---KEYNWFYAYIFSNFEQAEKYIN 186 (299)
T ss_pred CCCCCHHHHHHHHHHc-C-C----C---hhHHHHHHHHcCCHHHHHHHHh
Confidence 9999999999888764 1 1 1 3456667777776335555543
No 297
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.015 Score=60.50 Aligned_cols=86 Identities=26% Similarity=0.374 Sum_probs=55.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTL 171 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 171 (814)
-.+|.|-|-+|||||||..+++.+.. ... .+.+|+..+. ..++ +.-+++++...+... .-.+...+.|.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA---~~~-~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~-l~aEt~~e~I~~~l 164 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLA---KRG-KVLYVSGEES--LQQI-KLRADRLGLPTNNLY-LLAETNLEDIIAEL 164 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHH---hcC-cEEEEeCCcC--HHHH-HHHHHHhCCCccceE-EehhcCHHHHHHHH
Confidence 36899999999999999999999983 232 6888765544 3333 344567776543211 11222233444444
Q ss_pred c-cCceEEEEccccC
Q 003513 172 S-KKKFALLLDDLWE 185 (814)
Q Consensus 172 ~-~~~~LlVlDdv~~ 185 (814)
. .++-++|+|-+..
T Consensus 165 ~~~~p~lvVIDSIQT 179 (456)
T COG1066 165 EQEKPDLVVIDSIQT 179 (456)
T ss_pred HhcCCCEEEEeccce
Confidence 3 5788999999754
No 298
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.31 E-value=0.0066 Score=62.86 Aligned_cols=145 Identities=14% Similarity=0.182 Sum_probs=79.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFK- 169 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~- 169 (814)
....++|||++|.|||.+|++++... .-.| +.++. .++. ... ..+.+..+..+.+
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~el---g~~~-----i~vsa----~eL~----sk~--------vGEsEk~IR~~F~~ 202 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKM---GIEP-----IVMSA----GELE----SEN--------AGEPGKLIRQRYRE 202 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHc---CCCe-----EEEEH----HHhh----cCc--------CCcHHHHHHHHHHH
Confidence 56799999999999999999999998 3332 33321 1111 111 1122222222222
Q ss_pred ---Hh--ccCceEEEEccccCcc------------cc--cccc----c-------------cCCCCcEEEEecCCccccc
Q 003513 170 ---TL--SKKKFALLLDDLWERV------------DL--KKIG----V-------------PLPKNSAVVFTTRFVDVCG 213 (814)
Q Consensus 170 ---~l--~~~~~LlVlDdv~~~~------------~~--~~~~----~-------------~~~~~~~iiiTtR~~~~~~ 213 (814)
.. ++++.+|+||+++... ++ ..+. . .-..+..||+||.+.....
T Consensus 203 A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LD 282 (413)
T PLN00020 203 AADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLY 282 (413)
T ss_pred HHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCC
Confidence 11 4689999999986331 00 0111 0 0112567788887665421
Q ss_pred c--CC---ccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChH
Q 003513 214 G--ME---ARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPL 266 (814)
Q Consensus 214 ~--~~---~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 266 (814)
. .. -+..| ..-+.++-.++++.+..... .+ .....+|++...|-|+
T Consensus 283 pALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~--l~---~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 283 APLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDG--VS---REDVVKLVDTFPGQPL 333 (413)
T ss_pred HhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCC--CC---HHHHHHHHHcCCCCCc
Confidence 1 11 12233 33456666777776654433 11 3556668888888775
No 299
>PRK14974 cell division protein FtsY; Provisional
Probab=96.30 E-value=0.036 Score=58.09 Aligned_cols=90 Identities=17% Similarity=0.173 Sum_probs=50.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccC--HHHHHHHHHHHhCCCCCC-CCCCCHHHHHHHH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQ--LEKIQETIGKKIGLCNDS-WKNKSLEEKAHDI 167 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l 167 (814)
+..+|.++|+.|+||||++..++..+. ...+ .++.+.. +.+. ...-++..+..++.+... ....+....+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~--~~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK--KNGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 357999999999999999999888772 2223 3444443 2222 223345667777654311 1122333333222
Q ss_pred HHHhc-cCceEEEEcccc
Q 003513 168 FKTLS-KKKFALLLDDLW 184 (814)
Q Consensus 168 ~~~l~-~~~~LlVlDdv~ 184 (814)
.+..+ ...=++++|-.-
T Consensus 215 i~~~~~~~~DvVLIDTaG 232 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAG 232 (336)
T ss_pred HHHHHhCCCCEEEEECCC
Confidence 22222 222388889874
No 300
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.29 E-value=0.016 Score=53.30 Aligned_cols=113 Identities=21% Similarity=0.151 Sum_probs=61.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECC---ccCHHHHHHHHHHHh-----CCCCCCCCCCCHHH--
Q 003513 93 GIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSK---DLQLEKIQETIGKKI-----GLCNDSWKNKSLEE-- 162 (814)
Q Consensus 93 ~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l-----~~~~~~~~~~~~~~-- 162 (814)
..|-|++..|.||||+|...+-+. ..+-..+.++..-+ ...-...++.+- .+ +.. ..+...+.++
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra---~~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~-~~~~~~~~~~~~ 77 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA---LGHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRG-FFWTTENDEEDI 77 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCC-CccCCCChHHHH
Confidence 467888888999999999988887 23333455554322 223333333331 00 000 0011111222
Q ss_pred -----HHHHHHHHhcc-CceEEEEccccCc--------cccccccccCCCCcEEEEecCCcc
Q 003513 163 -----KAHDIFKTLSK-KKFALLLDDLWER--------VDLKKIGVPLPKNSAVVFTTRFVD 210 (814)
Q Consensus 163 -----~~~~l~~~l~~-~~~LlVlDdv~~~--------~~~~~~~~~~~~~~~iiiTtR~~~ 210 (814)
.....++.+.. .-=|||||++-.. +++.++...-+.+..+|+|.|+..
T Consensus 78 ~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 78 AAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 12223333433 3459999998533 334444444556889999999754
No 301
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.29 E-value=0.0088 Score=53.74 Aligned_cols=45 Identities=22% Similarity=0.419 Sum_probs=35.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCC
Q 003513 94 IIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCN 152 (814)
Q Consensus 94 ~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 152 (814)
+|.|.|++|+||||+|+.+++.. .-.+ + +...++++|++..|+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~-----v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKL-----V------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCce-----e------eccHHHHHHHHHcCCCH
Confidence 68999999999999999999987 2222 1 23468899999888754
No 302
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.28 E-value=0.036 Score=58.34 Aligned_cols=88 Identities=19% Similarity=0.163 Sum_probs=49.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCcc-CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDL-QLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFK 169 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 169 (814)
+.++|+|+|++|+||||++..++.... ..-..+..++..... ...+-++..++.++.+.. ...+...+...+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~---~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~~ 314 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH---GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALTY 314 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH---HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHHH
Confidence 347999999999999999999998772 222345555543321 122223344455554431 12344454444433
Q ss_pred Hhcc-CceEEEEccc
Q 003513 170 TLSK-KKFALLLDDL 183 (814)
Q Consensus 170 ~l~~-~~~LlVlDdv 183 (814)
.-.. +.=++++|-.
T Consensus 315 lk~~~~~DvVLIDTa 329 (436)
T PRK11889 315 FKEEARVDYILIDTA 329 (436)
T ss_pred HHhccCCCEEEEeCc
Confidence 3221 2346777876
No 303
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.27 E-value=0.0049 Score=67.60 Aligned_cols=46 Identities=24% Similarity=0.388 Sum_probs=40.5
Q ss_pred cccchhHHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 71 TVVGLQSQLEQVWRCLVQ-----EPAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 71 ~~vGr~~~~~~l~~~L~~-----~~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
+++|.++.+++|++.|.. +...+++.++|++|+||||||+.+++-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 579999999999999832 2356899999999999999999999987
No 304
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.27 E-value=0.005 Score=55.30 Aligned_cols=25 Identities=48% Similarity=0.539 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
..-|+|+|++|+||||+++.+++..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 4568999999999999999999988
No 305
>PRK13695 putative NTPase; Provisional
Probab=96.25 E-value=0.0061 Score=58.03 Aligned_cols=23 Identities=48% Similarity=0.686 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 003513 94 IIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 94 ~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
.++|+|.+|+|||||++.+++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998876
No 306
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.23 E-value=0.026 Score=57.70 Aligned_cols=90 Identities=21% Similarity=0.228 Sum_probs=50.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCH--HHHHHHHHHHhCCCCC-CCCCCCHHHH-HHH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQL--EKIQETIGKKIGLCND-SWKNKSLEEK-AHD 166 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~-~~~~~~~~~~-~~~ 166 (814)
..+++.++|++|+||||++..++... ...-..+.+++... +.. .+-+...++..+...- .....+.... ...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l---~~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL---KKQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH---HhcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 46899999999999999999999887 23334566666543 222 2333445555554321 0011223232 233
Q ss_pred HHHHhccCceEEEEcccc
Q 003513 167 IFKTLSKKKFALLLDDLW 184 (814)
Q Consensus 167 l~~~l~~~~~LlVlDdv~ 184 (814)
+.....+..=++|+|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 333333444578888763
No 307
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.18 Score=48.92 Aligned_cols=160 Identities=16% Similarity=0.198 Sum_probs=86.4
Q ss_pred cccchhHHHHHHHHHHhc---------C---CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHH
Q 003513 71 TVVGLQSQLEQVWRCLVQ---------E---PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLE 138 (814)
Q Consensus 71 ~~vGr~~~~~~l~~~L~~---------~---~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 138 (814)
++=|-+..++++++.+.- + ...+-|..+|++|.|||-+|++.+.+- ...|-. .. ...
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT---~aTFLK-----LA---gPQ 240 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT---NATFLK-----LA---GPQ 240 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc---cchHHH-----hc---chH
Confidence 356788999999888731 0 245678899999999999999998875 333311 00 011
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcc-CceEEEEccccCcc--------------------ccccccccCC
Q 003513 139 KIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLSK-KKFALLLDDLWERV--------------------DLKKIGVPLP 197 (814)
Q Consensus 139 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~~--------------------~~~~~~~~~~ 197 (814)
-++.- + .+...++......-+. .+.++.+|.++..- -+.++ ..|.
T Consensus 241 LVQMf------I-------GdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQL-DGFs 306 (424)
T KOG0652|consen 241 LVQMF------I-------GDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQL-DGFS 306 (424)
T ss_pred HHhhh------h-------cchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhh-cCCC
Confidence 11111 1 1222333333333344 57889999876320 01111 1122
Q ss_pred C--CcEEEEecCCcccc-----ccCCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHH
Q 003513 198 K--NSAVVFTTRFVDVC-----GGMEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQ 255 (814)
Q Consensus 198 ~--~~~iiiTtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~ 255 (814)
. ..+||.+|..-.+. +.-..+..++.+--+++.-.++++-++.......+-.++++++
T Consensus 307 s~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaR 371 (424)
T KOG0652|consen 307 SDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELAR 371 (424)
T ss_pred CccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhh
Confidence 2 67888877655442 2223344566544444444445544544444445555565554
No 308
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.061 Score=53.32 Aligned_cols=167 Identities=18% Similarity=0.203 Sum_probs=92.5
Q ss_pred cccchhHHHHHHHHHHh---------cCC--CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHH
Q 003513 71 TVVGLQSQLEQVWRCLV---------QEP--AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEK 139 (814)
Q Consensus 71 ~~vGr~~~~~~l~~~L~---------~~~--~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 139 (814)
++-|-+...+.|.+... .++ .-+-|.++|++|.||+.||++|+... . .-|+.+|...
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---n-----STFFSvSSSD---- 201 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---N-----STFFSVSSSD---- 201 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---C-----CceEEeehHH----
Confidence 45677888887777542 121 35689999999999999999999987 2 2234455432
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc-cCceEEEEccccCc---------cccccc----c---ccCCC---C
Q 003513 140 IQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLS-KKKFALLLDDLWER---------VDLKKI----G---VPLPK---N 199 (814)
Q Consensus 140 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~---------~~~~~~----~---~~~~~---~ 199 (814)
+ ...+.. .-+.++..+.+.-+ +++-+|.+|.++.. +..+.+ . ...+. |
T Consensus 202 L----vSKWmG--------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~g 269 (439)
T KOG0739|consen 202 L----VSKWMG--------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDG 269 (439)
T ss_pred H----HHHHhc--------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCc
Confidence 2 222211 23556666666554 58899999998743 111111 0 11122 5
Q ss_pred cEEEEecCCccccccC---CccceEEeccCCHHhHHH-HHHHHhccccccCCCChHHHHHHHHHHcCCCh
Q 003513 200 SAVVFTTRFVDVCGGM---EARRMFKVACLSDEDAWE-LFREKVGEETIESHHSLPELAQTVAKECRGLP 265 (814)
Q Consensus 200 ~~iiiTtR~~~~~~~~---~~~~~~~l~~L~~~ea~~-l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 265 (814)
.-|+-+|..+-+.... .-...|-+ ||.+..|.+ +|+-+.+... ..-.+...+++.++..|.-
T Consensus 270 vLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp---~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTP---HVLTEQDFKELARKTEGYS 335 (439)
T ss_pred eEEEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCc---cccchhhHHHHHhhcCCCC
Confidence 5566667655443211 11222333 455555554 5555555432 1223455666777766543
No 309
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.22 E-value=0.0032 Score=61.09 Aligned_cols=26 Identities=35% Similarity=0.494 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
+-++..|.|++|.||||+++.+....
T Consensus 17 ~~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp TCSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHH
Confidence 34789999999999999999988877
No 310
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.22 E-value=0.039 Score=53.57 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=45.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCCC---eEEEEEECCccCHHHHHHHHHHHh--CCCCCCCCCCCHHHHHHHHH
Q 003513 94 IIGLYGMGGVGKTTLLTQINNKFVDNPKDFD---YVIWVVVSKDLQLEKIQETIGKKI--GLCNDSWKNKSLEEKAHDIF 168 (814)
Q Consensus 94 ~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~~~~~~l~ 168 (814)
+|+|.|++|+||||+|+.++..+.+ .... ....+.............. .... ....+....-+.+.+...+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~--~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK--RGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT--CTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc--cCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 6999999999999999999998821 2222 2333332222211222211 1111 11112234556777777777
Q ss_pred HHhccCceEE
Q 003513 169 KTLSKKKFAL 178 (814)
Q Consensus 169 ~~l~~~~~Ll 178 (814)
...+++.+-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 6666666444
No 311
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.22 E-value=0.16 Score=50.06 Aligned_cols=227 Identities=12% Similarity=0.140 Sum_probs=123.8
Q ss_pred cccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccC---CCCCCeEEEEEECCc----------cC-
Q 003513 71 TVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDN---PKDFDYVIWVVVSKD----------LQ- 136 (814)
Q Consensus 71 ~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~---~~~f~~~~wv~~~~~----------~~- 136 (814)
.+.++++....+......+ +.+.+.++|+.|.||-|.+..+.+..-.. +-.-+..-|.+.+.. ..
T Consensus 14 ~l~~~~e~~~~Lksl~~~~-d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTG-DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred hcccHHHHHHHHHHhcccC-CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceE
Confidence 3677777777777665534 78999999999999999888887775211 112234445443322 00
Q ss_pred ----------HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhccCce-EEEEccccCc-----cccccccccCCCCc
Q 003513 137 ----------LEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLSKKKF-ALLLDDLWER-----VDLKKIGVPLPKNS 200 (814)
Q Consensus 137 ----------~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~-----~~~~~~~~~~~~~~ 200 (814)
-+-+.++++....... . .+.-.++.| ++|+-.+++. ..++.-.......+
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~------q--------ie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~ 158 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQ------Q--------IETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNC 158 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhc------c--------hhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCc
Confidence 0112222222211100 0 000012344 5555555433 12332233334478
Q ss_pred EEEEecCCcc--ccccCCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHHHHhc-c
Q 003513 201 AVVFTTRFVD--VCGGMEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIGRAMA-Y 277 (814)
Q Consensus 201 ~iiiTtR~~~--~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~-~ 277 (814)
|+|+...+.. +...-...-.+++...+++|....+...+..++...+ .+.+.+|+++++|+-.-...+-..++ +
T Consensus 159 RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~ 235 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVN 235 (351)
T ss_pred eEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 8876433211 1111123446899999999999999998877665455 88999999999986543333322222 1
Q ss_pred C---------CCHHHHHHHHHHHhhhhcccCCCchhhhhhhhhhccCC
Q 003513 278 K---------KTPEEWRYAIEVLRRSASEFAGLGKEVYPLLKFSYDCL 316 (814)
Q Consensus 278 ~---------~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L 316 (814)
+ -..-+|+.++.+..+..-.-+. .+.+..+-..=|+-|
T Consensus 236 n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs-~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 236 NEPFTANSQVIPKPDWEIYIQEIARVILKEQS-PAKLLEVRGRLYELL 282 (351)
T ss_pred cccccccCCCCCCccHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHH
Confidence 1 1345899888777655322111 124444444445544
No 312
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.22 E-value=0.033 Score=55.74 Aligned_cols=46 Identities=28% Similarity=0.322 Sum_probs=33.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQ 141 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 141 (814)
.-.++.|.|.+|+||||+|.+++.... ..-+.++|++.... .+++.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~~--~~~i~ 64 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEES--RESII 64 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccCC--HHHHH
Confidence 457999999999999999999876542 23457888876443 34443
No 313
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.026 Score=65.61 Aligned_cols=103 Identities=16% Similarity=0.235 Sum_probs=71.4
Q ss_pred CcccchhHHHHHHHHHHhcC-----C--CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHH
Q 003513 70 PTVVGLQSQLEQVWRCLVQE-----P--AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQE 142 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~-----~--~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 142 (814)
..++|.++.+..|.+.+... . ...++.+.|+.|+|||-||++++... .+..+..+-++.+....
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse~~e------ 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSEFQE------ 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhhhhh------
Confidence 34788888888888888652 1 45688899999999999999999988 66666667666554322
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHHhccCce-EEEEccccCc
Q 003513 143 TIGKKIGLCNDSWKNKSLEEKAHDIFKTLSKKKF-ALLLDDLWER 186 (814)
Q Consensus 143 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~ 186 (814)
+.+.++.+. ..-..+....+.+.+++++| +|.||||+..
T Consensus 633 -vskligsp~----gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 633 -VSKLIGSPP----GYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred -hhhccCCCc----ccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 333333321 11223344578888888887 5567999855
No 314
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.19 E-value=0.024 Score=61.50 Aligned_cols=91 Identities=20% Similarity=0.207 Sum_probs=51.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCcc-CHHHHHHHHHHHhCCCCCC-CCCCCHHHHHHHHHH
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDL-QLEKIQETIGKKIGLCNDS-WKNKSLEEKAHDIFK 169 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~~ 169 (814)
..++.++|++|+||||.|..++..... ..-..+..+++.... ...+-+...+...+++... ....++........+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~--~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKK--KQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH--hCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 579999999999999999999887611 112245555543221 2233344555666554321 122344455444444
Q ss_pred HhccCce-EEEEcccc
Q 003513 170 TLSKKKF-ALLLDDLW 184 (814)
Q Consensus 170 ~l~~~~~-LlVlDdv~ 184 (814)
....+.+ ++|+|-.-
T Consensus 177 ~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 177 YAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 4444444 77777753
No 315
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.17 E-value=0.0053 Score=55.86 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=32.3
Q ss_pred cchhHHHHHHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 73 VGLQSQLEQVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 73 vGr~~~~~~l~~~L~~~-~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
||+...++++.+.+..- ....-|.|+|..|+||+++|+.+....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 57777777777777541 234667899999999999999888876
No 316
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.16 E-value=0.02 Score=60.68 Aligned_cols=88 Identities=22% Similarity=0.260 Sum_probs=51.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCc-cCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKD-LQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKT 170 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 170 (814)
-.++.++|+.|+||||++..++..... ......+..++.... ....+-++..++.++++... ..+..+....+ ..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~-~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~--~~~~~~l~~~l-~~ 212 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVM-RFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA--VKDGGDLQLAL-AE 212 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe--cCCcccHHHHH-HH
Confidence 469999999999999999999987611 222235666653321 23445566667777765421 11222222222 33
Q ss_pred hccCceEEEEcccc
Q 003513 171 LSKKKFALLLDDLW 184 (814)
Q Consensus 171 l~~~~~LlVlDdv~ 184 (814)
+.++ -++++|..-
T Consensus 213 l~~~-DlVLIDTaG 225 (374)
T PRK14722 213 LRNK-HMVLIDTIG 225 (374)
T ss_pred hcCC-CEEEEcCCC
Confidence 3444 456689873
No 317
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.16 E-value=0.034 Score=58.50 Aligned_cols=93 Identities=12% Similarity=0.193 Sum_probs=57.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcc---CCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCC-------CCCCCH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVD---NPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDS-------WKNKSL 160 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 160 (814)
.-.++-|+|.+|+|||+|+..++-.... ....-..++|++....+..+.+. +|++.++...+. ....+.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~~~~~l~~i~~~~~~~~ 200 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLNGADVLENVAYARAYNT 200 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCChhhhccceEEEecCCH
Confidence 4578889999999999999988754311 01122379999999988887764 556666654311 011233
Q ss_pred HHHHHHHH---HHh-ccCceEEEEcccc
Q 003513 161 EEKAHDIF---KTL-SKKKFALLLDDLW 184 (814)
Q Consensus 161 ~~~~~~l~---~~l-~~~~~LlVlDdv~ 184 (814)
+.....+. ..+ ..+.-|||+|-+.
T Consensus 201 e~~~~ll~~~~~~~~~~~~~LIVIDSI~ 228 (342)
T PLN03186 201 DHQSELLLEAASMMAETRFALMIVDSAT 228 (342)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEeCcH
Confidence 33333332 223 2345688888864
No 318
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.15 E-value=0.043 Score=57.75 Aligned_cols=59 Identities=19% Similarity=0.256 Sum_probs=42.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccC---CCCCCeEEEEEECCccCHHHHHHHHHHHhCC
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDN---PKDFDYVIWVVVSKDLQLEKIQETIGKKIGL 150 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 150 (814)
.-.++-|+|++|+||||++.+++...... ...-..++||+....++.+.+.+ +++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 45788999999999999999998775210 00113799999988888776653 4455544
No 319
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.14 E-value=0.027 Score=55.81 Aligned_cols=121 Identities=17% Similarity=0.123 Sum_probs=71.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECC-----ccCHHHHHHHHHHHhCCCCCCC-----CCCCH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSK-----DLQLEKIQETIGKKIGLCNDSW-----KNKSL 160 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~~~-----~~~~~ 160 (814)
.-.+++|+|..|.||||+++.+..-. .... +.+++...+ .....+-..++++..|+..+.. .-..-
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~---~pt~-G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE---EPTS-GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc---CCCC-ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 34689999999999999999998876 3232 334443221 2223444566667767544211 11222
Q ss_pred HHHHHHHHHHhccCceEEEEccccCcccc------ccccccCCC--CcEEEEecCCccccccC
Q 003513 161 EEKAHDIFKTLSKKKFALLLDDLWERVDL------KKIGVPLPK--NSAVVFTTRFVDVCGGM 215 (814)
Q Consensus 161 ~~~~~~l~~~l~~~~~LlVlDdv~~~~~~------~~~~~~~~~--~~~iiiTtR~~~~~~~~ 215 (814)
+...-.|.+.+.-++-++|.|..-..-+. ..+...+.. |...++.|-+-.+...+
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhh
Confidence 23334466778889999999997544221 111111111 66777777766665543
No 320
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.13 E-value=0.021 Score=62.82 Aligned_cols=85 Identities=22% Similarity=0.339 Sum_probs=51.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSW---KNKSLEEKAHDI 167 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 167 (814)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++.... ..++... +++++...+.. ...+.++....+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i 152 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLEAILATI 152 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHH
Confidence 346999999999999999999998873 22346788876543 4444332 45555432111 112333333322
Q ss_pred HHHhccCceEEEEcccc
Q 003513 168 FKTLSKKKFALLLDDLW 184 (814)
Q Consensus 168 ~~~l~~~~~LlVlDdv~ 184 (814)
. +.+.-++|+|.+.
T Consensus 153 ~---~~~~~lVVIDSIq 166 (446)
T PRK11823 153 E---EEKPDLVVIDSIQ 166 (446)
T ss_pred H---hhCCCEEEEechh
Confidence 2 2355678888864
No 321
>PRK08233 hypothetical protein; Provisional
Probab=96.11 E-value=0.02 Score=54.96 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
..+|+|.|.+|+||||+|+.++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999999887
No 322
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.07 E-value=0.022 Score=55.30 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCC-------CCeEEEEEECCc
Q 003513 93 GIIGLYGMGGVGKTTLLTQINNKFVDNPKD-------FDYVIWVVVSKD 134 (814)
Q Consensus 93 ~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~-------f~~~~wv~~~~~ 134 (814)
.++.|.|++|+||||++.+++......... -..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 588999999999999999998887432221 237888876655
No 323
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.039 Score=62.35 Aligned_cols=149 Identities=17% Similarity=0.143 Sum_probs=85.4
Q ss_pred cccchhHHHHHHHHHHh---c--------C-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHH
Q 003513 71 TVVGLQSQLEQVWRCLV---Q--------E-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLE 138 (814)
Q Consensus 71 ~~vGr~~~~~~l~~~L~---~--------~-~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 138 (814)
.+.|.+...+.+.+... . + ...+.+.++|++|.|||.||+++++.. ...|-.+.+ .
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~-----~---- 310 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKG-----S---- 310 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeC-----H----
Confidence 34566665555554432 1 1 245689999999999999999999976 444432211 1
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCccccc-------------ccccc---CCC--Cc
Q 003513 139 KIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWERVDLK-------------KIGVP---LPK--NS 200 (814)
Q Consensus 139 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~-------------~~~~~---~~~--~~ 200 (814)
. +.... ...........+....+..+.+|.+|+++...... .+... ... +.
T Consensus 311 ~----l~sk~-------vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v 379 (494)
T COG0464 311 E----LLSKW-------VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGV 379 (494)
T ss_pred H----Hhccc-------cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCce
Confidence 1 11111 11122222333334445789999999997542211 11111 112 44
Q ss_pred EEEEecCCcccccc-----CCccceEEeccCCHHhHHHHHHHHhccc
Q 003513 201 AVVFTTRFVDVCGG-----MEARRMFKVACLSDEDAWELFREKVGEE 242 (814)
Q Consensus 201 ~iiiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~ 242 (814)
.||-||..+..... ..-...+.+..-+.++..+.|..+....
T Consensus 380 ~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~ 426 (494)
T COG0464 380 LVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDK 426 (494)
T ss_pred EEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhccc
Confidence 45555554443221 1345688999999999999999988643
No 324
>PRK05973 replicative DNA helicase; Provisional
Probab=96.05 E-value=0.05 Score=53.90 Aligned_cols=49 Identities=14% Similarity=0.172 Sum_probs=35.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETI 144 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 144 (814)
.-.++.|.|.+|+|||++|.+++.... ..-..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a---~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM---KSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEEeCC--HHHHHHHH
Confidence 347899999999999999999988762 23456777776554 45555554
No 325
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.04 E-value=0.024 Score=54.27 Aligned_cols=117 Identities=21% Similarity=0.278 Sum_probs=64.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEEC--CccCHHHHHH------HHHHHhCCCCC---CC-CCCC
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVS--KDLQLEKIQE------TIGKKIGLCND---SW-KNKS 159 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~--~~~~~~~~~~------~i~~~l~~~~~---~~-~~~~ 159 (814)
-.+++|.|+.|.|||||++.++... ....+.+++.-. ...+...... ++++.+++... .. .-..
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 4689999999999999999998865 223344444311 1112222211 14555554321 00 1122
Q ss_pred HHHHHHHHHHHhccCceEEEEccccCccc------cccccccCC-C-CcEEEEecCCcccc
Q 003513 160 LEEKAHDIFKTLSKKKFALLLDDLWERVD------LKKIGVPLP-K-NSAVVFTTRFVDVC 212 (814)
Q Consensus 160 ~~~~~~~l~~~l~~~~~LlVlDdv~~~~~------~~~~~~~~~-~-~~~iiiTtR~~~~~ 212 (814)
-+...-.+...+-..+-++++|+....-+ +..+...+. . +..||++|.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 23333445666677888999999754322 222222222 2 56788888765543
No 326
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.02 E-value=0.033 Score=53.18 Aligned_cols=123 Identities=17% Similarity=0.207 Sum_probs=63.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCC------------C-CCC
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDS------------W-KNK 158 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------------~-~~~ 158 (814)
-.+++|.|+.|.|||||++.++... . ...+.+++... ++......+...++.-... . .-.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~-~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS 100 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL---K-PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFS 100 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC---C-CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCC
Confidence 3689999999999999999998875 1 12334444321 1111111111222110000 0 011
Q ss_pred CHHHHHHHHHHHhccCceEEEEccccCccc------cccccccCCCCcEEEEecCCccccccCCccceEEe
Q 003513 159 SLEEKAHDIFKTLSKKKFALLLDDLWERVD------LKKIGVPLPKNSAVVFTTRFVDVCGGMEARRMFKV 223 (814)
Q Consensus 159 ~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~------~~~~~~~~~~~~~iiiTtR~~~~~~~~~~~~~~~l 223 (814)
.-+...-.+...+-.++-++++|+..+.-+ +..+...+..+..||++|.+...... .++.+.+
T Consensus 101 ~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 122233345556667888999999764422 11221222236778888887665532 3444444
No 327
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.02 E-value=0.027 Score=58.03 Aligned_cols=87 Identities=25% Similarity=0.303 Sum_probs=48.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCcc-CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDL-QLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFK 169 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 169 (814)
..++++|+|++|+||||++..++.... ....-..+..++..... .....+....+.++.+.. ...+.......+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~-~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~- 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFV-LEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALD- 268 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHH-
Confidence 346999999999999999999988772 11112356666654321 122333445555555432 1233334333333
Q ss_pred HhccCceEEEEcc
Q 003513 170 TLSKKKFALLLDD 182 (814)
Q Consensus 170 ~l~~~~~LlVlDd 182 (814)
.+.+ .=++++|.
T Consensus 269 ~~~~-~d~vliDt 280 (282)
T TIGR03499 269 RLRD-KDLILIDT 280 (282)
T ss_pred HccC-CCEEEEeC
Confidence 3333 34777775
No 328
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.02 E-value=0.013 Score=58.50 Aligned_cols=89 Identities=24% Similarity=0.246 Sum_probs=57.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCC-CCeEEEEEECCccCHHHHHHHHHHHhCCCC--------------CCC
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKD-FDYVIWVVVSKDLQLEKIQETIGKKIGLCN--------------DSW 155 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--------------~~~ 155 (814)
.-.++.|.|.+|+|||++|.+++.... .. -+.++|++...+ .+++.+.+. .++... ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~---~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGL---KNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhh---hhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEecccc
Confidence 457999999999999999999876652 22 456888876554 355554433 333211 000
Q ss_pred ----CCCCHHHHHHHHHHHhcc-CceEEEEccccC
Q 003513 156 ----KNKSLEEKAHDIFKTLSK-KKFALLLDDLWE 185 (814)
Q Consensus 156 ----~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~ 185 (814)
...+.+.....+.+.++. +.-.+|+|.+..
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~ 126 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSA 126 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHH
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCEEEEECHHH
Confidence 035677788888887765 567999999753
No 329
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.00 E-value=0.029 Score=60.50 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=28.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEE
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVV 131 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 131 (814)
...+|.++|+.|+||||+|..++..+ . ..-..++.+++
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l-~--~~G~kV~lV~~ 136 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY-Q--RKGFKPCLVCA 136 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-H--HCCCCEEEEcC
Confidence 35799999999999999999998877 2 22224555544
No 330
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.98 E-value=0.014 Score=67.97 Aligned_cols=103 Identities=18% Similarity=0.251 Sum_probs=61.2
Q ss_pred CcccchhHHHHHHHHHHhc--------CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHH
Q 003513 70 PTVVGLQSQLEQVWRCLVQ--------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQ 141 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~--------~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 141 (814)
..++|.++.++.|...+.. +.....+.++|+.|+|||++|+.++... .. ..+.++++.......
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l---~~---~~i~id~se~~~~~~-- 529 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GI---ELLRFDMSEYMERHT-- 529 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh---CC---CcEEeechhhccccc--
Confidence 4589999999999988862 1224578999999999999999998887 22 234455544322111
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHhccC-ceEEEEccccCc
Q 003513 142 ETIGKKIGLCNDSWKNKSLEEKAHDIFKTLSKK-KFALLLDDLWER 186 (814)
Q Consensus 142 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~ 186 (814)
+..-+|.+. ..... .....+.+.++.+ .-+++||+++..
T Consensus 530 --~~~LiG~~~-gyvg~---~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 530 --VSRLIGAPP-GYVGF---DQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred --HHHHcCCCC-Ccccc---cccchHHHHHHhCCCcEEEeccHhhh
Confidence 122223221 00110 1112233444444 459999999754
No 331
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.98 E-value=0.041 Score=61.61 Aligned_cols=99 Identities=16% Similarity=0.136 Sum_probs=61.8
Q ss_pred HHHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCC----
Q 003513 80 EQVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDS---- 154 (814)
Q Consensus 80 ~~l~~~L~~~-~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---- 154 (814)
..+-+.|..+ ..-.++.|.|++|+|||||+.+++.... ..-+.++++.... +..++.+.+ +.+|...+.
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~ 323 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQ 323 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhC
Confidence 3344444443 3457999999999999999999998873 3345677776544 456666553 455543211
Q ss_pred ---------CCCCCHHHHHHHHHHHhcc-CceEEEEcccc
Q 003513 155 ---------WKNKSLEEKAHDIFKTLSK-KKFALLLDDLW 184 (814)
Q Consensus 155 ---------~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 184 (814)
......++.+..+.+.+.. +.-.+|+|.+.
T Consensus 324 g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 324 GLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred CcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 0122345666666666654 55678888864
No 332
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.4 Score=46.39 Aligned_cols=163 Identities=18% Similarity=0.285 Sum_probs=90.1
Q ss_pred ccc-hhHHHHHHHHHHhc---------C---CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHH
Q 003513 72 VVG-LQSQLEQVWRCLVQ---------E---PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLE 138 (814)
Q Consensus 72 ~vG-r~~~~~~l~~~L~~---------~---~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 138 (814)
+|| -+..+++|.+.+.- . ...+-+.++|++|.|||-||+++++.- ...|+.+|.. +
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgs---e 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGS---E 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechH---H
Confidence 455 47777777665531 1 245678899999999999999999875 2345666543 3
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhccCceEEEEccccCcc------------c--------cccccccCC
Q 003513 139 KIQETIGKKIGLCNDSWKNKSLEEKAHDIFK-TLSKKKFALLLDDLWERV------------D--------LKKIGVPLP 197 (814)
Q Consensus 139 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~------------~--------~~~~~~~~~ 197 (814)
-+++-|.+. ...+..+.- .-..-+-++.+|.++... . +.++ ..|.
T Consensus 217 lvqk~igeg-------------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnql-dgfe 282 (404)
T KOG0728|consen 217 LVQKYIGEG-------------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQL-DGFE 282 (404)
T ss_pred HHHHHhhhh-------------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhc-cccc
Confidence 344433321 111111111 112457788888886531 0 1111 1122
Q ss_pred --CCcEEEEecCCcccc-----ccCCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHH
Q 003513 198 --KNSAVVFTTRFVDVC-----GGMEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAK 259 (814)
Q Consensus 198 --~~~~iiiTtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 259 (814)
.+-+||.+|..-++. +.-..+..++.++-+++.-.++++-+....+.-.--+++.+|.++.-
T Consensus 283 atknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~g 351 (404)
T KOG0728|consen 283 ATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPG 351 (404)
T ss_pred cccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCC
Confidence 267888877655443 22234556888888877777777665433332222334555544433
No 333
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.97 E-value=0.0056 Score=54.89 Aligned_cols=22 Identities=36% Similarity=0.771 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 003513 95 IGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 95 i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
|+|.|+.|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998884
No 334
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.97 E-value=0.013 Score=57.55 Aligned_cols=59 Identities=22% Similarity=0.245 Sum_probs=39.0
Q ss_pred HHHHHHHHHhc-CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCH
Q 003513 78 QLEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQL 137 (814)
Q Consensus 78 ~~~~l~~~L~~-~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 137 (814)
...++++.+.. .++..+|+|+|++|.|||||.-++...+. ..++--.++-|+-|++++=
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~-~~g~~VaVlAVDPSSp~tG 73 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELR-ERGKRVAVLAVDPSSPFTG 73 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHH-HTT--EEEEEE-GGGGCC-
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHh-hcCCceEEEEECCCCCCCC
Confidence 44555555544 34678999999999999999999999883 2344446777776666653
No 335
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.95 E-value=0.0077 Score=55.13 Aligned_cols=35 Identities=29% Similarity=0.255 Sum_probs=28.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEE
Q 003513 93 GIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVV 130 (814)
Q Consensus 93 ~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~ 130 (814)
.+|.|+|.+|+||||||+++.+.+ ......+.+++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L---~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRL---FARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH---HHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEec
Confidence 589999999999999999999998 34445667765
No 336
>PRK06547 hypothetical protein; Provisional
Probab=95.95 E-value=0.011 Score=55.70 Aligned_cols=33 Identities=24% Similarity=0.195 Sum_probs=26.9
Q ss_pred HHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 83 WRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 83 ~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
...+... ...+|+|.|++|+||||+|+.++...
T Consensus 7 ~~~~~~~-~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 7 AARLCGG-GMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHhhcC-CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3334444 67899999999999999999998875
No 337
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.95 E-value=0.067 Score=54.69 Aligned_cols=50 Identities=22% Similarity=0.321 Sum_probs=39.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHH
Q 003513 90 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETI 144 (814)
Q Consensus 90 ~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 144 (814)
+.-+++.|+|.+|+|||++|.++.... ....+.++||+.... ...+.+..
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~--~~~l~~~~ 70 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES--PEELLENA 70 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC--HHHHHHHH
Confidence 456899999999999999999999988 455788999988765 34444443
No 338
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.93 E-value=0.026 Score=53.50 Aligned_cols=123 Identities=20% Similarity=0.205 Sum_probs=63.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCc--cCHHHHHHHHHHHhCCCC-C-CCCCCC-------
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKD--LQLEKIQETIGKKIGLCN-D-SWKNKS------- 159 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~-~-~~~~~~------- 159 (814)
.-.+++|.|+.|.|||||++.++.-. . ...+.+++..... ...... ...++.-. + .....+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~---~-~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS 98 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY---D-PTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILS 98 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC---C-CCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhC
Confidence 34789999999999999999998875 2 2234444432110 011111 11111100 0 000001
Q ss_pred -HHHHHHHHHHHhccCceEEEEccccCcc------ccccccccCCCCcEEEEecCCccccccCCccceEEe
Q 003513 160 -LEEKAHDIFKTLSKKKFALLLDDLWERV------DLKKIGVPLPKNSAVVFTTRFVDVCGGMEARRMFKV 223 (814)
Q Consensus 160 -~~~~~~~l~~~l~~~~~LlVlDdv~~~~------~~~~~~~~~~~~~~iiiTtR~~~~~~~~~~~~~~~l 223 (814)
-+...-.+...+-.++-++++|+-.+.- .+..+...+..+..||++|.+...... .++++.+
T Consensus 99 ~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 99 GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 1122233555666788899999975432 222222223335678888887665542 3444444
No 339
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.93 E-value=0.024 Score=54.65 Aligned_cols=45 Identities=24% Similarity=0.186 Sum_probs=32.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHH
Q 003513 94 IIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQET 143 (814)
Q Consensus 94 ~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 143 (814)
++.|.|++|+|||++|.+++.... ..-..++|++... +.+++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCC--CHHHHHHH
Confidence 367999999999999999988763 3335678887654 35555444
No 340
>PRK07667 uridine kinase; Provisional
Probab=95.92 E-value=0.017 Score=55.90 Aligned_cols=38 Identities=18% Similarity=0.395 Sum_probs=29.8
Q ss_pred HHHHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 79 LEQVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 79 ~~~l~~~L~~~-~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
.+.|.+.+... +...+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555555442 355799999999999999999999987
No 341
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.87 E-value=0.022 Score=57.97 Aligned_cols=120 Identities=20% Similarity=0.191 Sum_probs=63.1
Q ss_pred cchhH-HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCC
Q 003513 73 VGLQS-QLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLC 151 (814)
Q Consensus 73 vGr~~-~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 151 (814)
.|... .++.+..++.. ...+|.|.|+.|.||||++..+.... ...-..++.+.-........+ .++...
T Consensus 62 lg~~~~~~~~l~~~~~~--~~GlilisG~tGSGKTT~l~all~~i---~~~~~~iitiEdp~E~~~~~~-----~q~~v~ 131 (264)
T cd01129 62 LGLKPENLEIFRKLLEK--PHGIILVTGPTGSGKTTTLYSALSEL---NTPEKNIITVEDPVEYQIPGI-----NQVQVN 131 (264)
T ss_pred cCCCHHHHHHHHHHHhc--CCCEEEEECCCCCcHHHHHHHHHhhh---CCCCCeEEEECCCceecCCCc-----eEEEeC
Confidence 34443 33444444433 34689999999999999999888776 222223333321111111100 011111
Q ss_pred CCCCCCCCHHHHHHHHHHHhccCceEEEEccccCccccccccccCCCCcEEEEecC
Q 003513 152 NDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWERVDLKKIGVPLPKNSAVVFTTR 207 (814)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~~~~~iiiTtR 207 (814)
..........+...++..+=.++++++.+.+....+......|..++-|.-
T Consensus 132 -----~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~aa~tGh~v~tTlH 182 (264)
T cd01129 132 -----EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQAALTGHLVLSTLH 182 (264)
T ss_pred -----CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHHHHcCCcEEEEec
Confidence 111113445667777888889999999887655443232223444443333
No 342
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.85 E-value=0.0045 Score=57.79 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 93 GIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 93 ~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
+.|.++|.+|+||||+|++++...
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 578899999999999999999987
No 343
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.85 E-value=0.067 Score=53.90 Aligned_cols=141 Identities=13% Similarity=0.185 Sum_probs=71.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCC---------CCCeEEEEEECCcc-CHHHHHHHHHHHhCCCCC---------C
Q 003513 94 IIGLYGMGGVGKTTLLTQINNKFVDNPK---------DFDYVIWVVVSKDL-QLEKIQETIGKKIGLCND---------S 154 (814)
Q Consensus 94 ~i~i~G~gGiGKTtLa~~~~~~~~~~~~---------~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---------~ 154 (814)
+..|+|++|+|||+||..++........ .-..+++++...+. .+..=+..+...++.... .
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 5679999999999999999876532111 12245666655433 233333444443321110 0
Q ss_pred C-----CC---CCHHHHHHHHHHHh-ccCceEEEEccccC--------cccccccccc---C--CCCcEEEEecCCcccc
Q 003513 155 W-----KN---KSLEEKAHDIFKTL-SKKKFALLLDDLWE--------RVDLKKIGVP---L--PKNSAVVFTTRFVDVC 212 (814)
Q Consensus 155 ~-----~~---~~~~~~~~~l~~~l-~~~~~LlVlDdv~~--------~~~~~~~~~~---~--~~~~~iiiTtR~~~~~ 212 (814)
. .. .........+.+.+ ..+.-++|+|-+.. ......+... + ..|+.||+++....-.
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~ 162 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGS 162 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence 0 00 01222334444433 34677999997632 1111111111 1 1277788777644221
Q ss_pred c--------cC-------CccceEEeccCCHHhHHHH
Q 003513 213 G--------GM-------EARRMFKVACLSDEDAWEL 234 (814)
Q Consensus 213 ~--------~~-------~~~~~~~l~~L~~~ea~~l 234 (814)
. .. .....+.+.+++++|+.++
T Consensus 163 ~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~~ 199 (239)
T cd01125 163 AKDGDTQEAARGASALVDGARWVRALTRMTSEEAEKM 199 (239)
T ss_pred ccCcccccccCcHHHHhcccceEEEEeeCCHHHHHhc
Confidence 1 00 1224678888888888773
No 344
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.044 Score=50.84 Aligned_cols=34 Identities=32% Similarity=0.487 Sum_probs=26.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEE
Q 003513 93 GIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWV 129 (814)
Q Consensus 93 ~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv 129 (814)
..+.|.|+.|+|||||.+.++--. +..-..+.|-
T Consensus 29 e~~~i~G~NG~GKTtLLRilaGLl---~p~~G~v~~~ 62 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAGLL---RPDAGEVYWQ 62 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHccc---CCCCCeEEec
Confidence 578999999999999999998876 3333345554
No 345
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.81 E-value=0.024 Score=53.90 Aligned_cols=125 Identities=14% Similarity=0.160 Sum_probs=62.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECC--ccCHHHHHHHHHHHhCCCCCCCC-------CCCHHH
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSK--DLQLEKIQETIGKKIGLCNDSWK-------NKSLEE 162 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~~-------~~~~~~ 162 (814)
-.+++|.|+.|.|||||++.++... . ...+.+++.... ........+.+.-... ...-.. -..-+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q-~~~~~~~tv~~~lLS~G~~ 102 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL---R-PTSGRVRLDGADISQWDPNELGDHVGYLPQ-DDELFSGSIAENILSGGQR 102 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc---C-CCCCeEEECCEEcccCCHHHHHhheEEECC-CCccccCcHHHHCcCHHHH
Confidence 3689999999999999999998875 2 223344432111 1111222111110000 000000 011222
Q ss_pred HHHHHHHHhccCceEEEEccccCccc------cccccccC-CCCcEEEEecCCccccccCCccceEEe
Q 003513 163 KAHDIFKTLSKKKFALLLDDLWERVD------LKKIGVPL-PKNSAVVFTTRFVDVCGGMEARRMFKV 223 (814)
Q Consensus 163 ~~~~l~~~l~~~~~LlVlDdv~~~~~------~~~~~~~~-~~~~~iiiTtR~~~~~~~~~~~~~~~l 223 (814)
..-.+...+-.++-++++|+....-| +..+...+ ..|..||++|.+..... . .++++.+
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~-~d~v~~l 168 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-S-ADRILVL 168 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 23335555666777999999754322 22222222 22667888887766543 2 3444444
No 346
>PTZ00301 uridine kinase; Provisional
Probab=95.81 E-value=0.017 Score=56.29 Aligned_cols=25 Identities=36% Similarity=0.663 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
..+|+|.|.+|+||||||+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999998876
No 347
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.80 E-value=0.055 Score=52.75 Aligned_cols=126 Identities=13% Similarity=0.172 Sum_probs=73.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEE----------------------CCcc--------------
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVV----------------------SKDL-------------- 135 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~----------------------~~~~-------------- 135 (814)
-.+++|+|+.|+|||||...+.--. +. -.+.+++.. -+.+
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ld---~p-t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~l 106 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGGLD---KP-TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVEL 106 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc---CC-CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHh
Confidence 3689999999999999998887543 11 222333321 0111
Q ss_pred ----------CHHHHHHHHHHHhCCCCCC-----CCCCCHHHHHHHHHHHhccCceEEEEccccCc------cccccccc
Q 003513 136 ----------QLEKIQETIGKKIGLCNDS-----WKNKSLEEKAHDIFKTLSKKKFALLLDDLWER------VDLKKIGV 194 (814)
Q Consensus 136 ----------~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------~~~~~~~~ 194 (814)
...+....+++.+++.... ..-..-++..-.+.+.+-..+-+|+-|+-... ..+..+..
T Consensus 107 pl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~ 186 (226)
T COG1136 107 PLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLR 186 (226)
T ss_pred HHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHH
Confidence 1233445556666664211 12233444555677778888889999985322 22223322
Q ss_pred cCC--CCcEEEEecCCccccccCCccceEEe
Q 003513 195 PLP--KNSAVVFTTRFVDVCGGMEARRMFKV 223 (814)
Q Consensus 195 ~~~--~~~~iiiTtR~~~~~~~~~~~~~~~l 223 (814)
.+. .|..||+.|-++.++... +.++.+
T Consensus 187 ~~~~~~g~tii~VTHd~~lA~~~--dr~i~l 215 (226)
T COG1136 187 ELNKERGKTIIMVTHDPELAKYA--DRVIEL 215 (226)
T ss_pred HHHHhcCCEEEEEcCCHHHHHhC--CEEEEE
Confidence 222 277899999999887753 444444
No 348
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.80 E-value=0.018 Score=57.49 Aligned_cols=61 Identities=25% Similarity=0.320 Sum_probs=45.0
Q ss_pred HHHHHHHHhc-CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHH
Q 003513 79 LEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKI 140 (814)
Q Consensus 79 ~~~l~~~L~~-~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 140 (814)
-.+++..+.. .++..+|+|+|.+|+|||||.-.+...+ ..+++--.|+-|+-|++++-..+
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsi 98 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSI 98 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCccc
Confidence 3455555544 3577899999999999999999999888 33455567777887777764444
No 349
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.79 E-value=0.038 Score=59.84 Aligned_cols=48 Identities=21% Similarity=0.220 Sum_probs=37.0
Q ss_pred CCcccchhHHHHHHHHHHhc-------C--------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 69 EPTVVGLQSQLEQVWRCLVQ-------E--------PAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 69 ~~~~vGr~~~~~~l~~~L~~-------~--------~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
...+||.+..++.+...+.. . -..+.+.++|++|+|||++|+.++...
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 34689999999888655521 0 023568999999999999999999876
No 350
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.77 E-value=0.0082 Score=46.90 Aligned_cols=23 Identities=30% Similarity=0.601 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 003513 94 IIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 94 ~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
+|+|.|..|+||||+|+.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 351
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.73 E-value=0.04 Score=60.47 Aligned_cols=89 Identities=21% Similarity=0.302 Sum_probs=47.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCcc-CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDL-QLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFK 169 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 169 (814)
...+|+|+|++|+||||++..++..... .+....+..++..... .....++.....+++... ...+...+...+ +
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~-~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL-~ 424 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAA-QHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLL-E 424 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH-hcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHH-H
Confidence 3479999999999999999999887621 2222345555542211 122223333444444321 112233333333 3
Q ss_pred HhccCceEEEEcccc
Q 003513 170 TLSKKKFALLLDDLW 184 (814)
Q Consensus 170 ~l~~~~~LlVlDdv~ 184 (814)
.+. ..=+||+|..-
T Consensus 425 ~l~-~~DLVLIDTaG 438 (559)
T PRK12727 425 RLR-DYKLVLIDTAG 438 (559)
T ss_pred Hhc-cCCEEEecCCC
Confidence 333 34588888863
No 352
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.73 E-value=0.24 Score=49.69 Aligned_cols=106 Identities=9% Similarity=0.135 Sum_probs=71.4
Q ss_pred CCcccchhHHHHHHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHH
Q 003513 69 EPTVVGLQSQLEQVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKK 147 (814)
Q Consensus 69 ~~~~vGr~~~~~~l~~~L~~~-~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 147 (814)
.+.|+|-... +++...+... ..-+.+.++|+.|+|||+-++.+++.. +..+.+..++.++...+...+...
T Consensus 71 ~~~~l~tkt~-r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~-------p~~~l~~~~p~~~a~~~i~~i~~~ 142 (297)
T COG2842 71 APDFLETKTV-RRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSN-------PNALLIEADPSYTALVLILIICAA 142 (297)
T ss_pred cccccccchh-HhHhhhhhhhhhcCceEEEeccccchhHHHHHhhcccC-------ccceeecCChhhHHHHHHHHHHHH
Confidence 4567775543 2333333321 123488999999999999999998876 234444566666666666666666
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCc
Q 003513 148 IGLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWER 186 (814)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 186 (814)
.... ...........+...+++..-+++.|+.+..
T Consensus 143 ~~~~----~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L 177 (297)
T COG2842 143 AFGA----TDGTINDLTERLMIRLRDTVRLIIVDEADRL 177 (297)
T ss_pred Hhcc----cchhHHHHHHHHHHHHccCcceeeeehhhcc
Confidence 5543 3456667777777888888889999997654
No 353
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.73 E-value=0.046 Score=57.38 Aligned_cols=88 Identities=20% Similarity=0.171 Sum_probs=54.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccC-HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQ-LEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFK 169 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 169 (814)
..+++.++|+.|+||||++..++.... ..-..+.+++...... ...-++..++.++++.. ...+..+....+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~---~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~- 278 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL---KQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQ- 278 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHH-
Confidence 467999999999999999999988762 2224567776643322 23445556666665431 2234555544443
Q ss_pred Hhc--cCceEEEEcccc
Q 003513 170 TLS--KKKFALLLDDLW 184 (814)
Q Consensus 170 ~l~--~~~~LlVlDdv~ 184 (814)
.++ +..=++++|-.-
T Consensus 279 ~l~~~~~~D~VLIDTAG 295 (407)
T PRK12726 279 YMTYVNCVDHILIDTVG 295 (407)
T ss_pred HHHhcCCCCEEEEECCC
Confidence 333 344677788763
No 354
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.72 E-value=0.072 Score=50.14 Aligned_cols=122 Identities=14% Similarity=0.151 Sum_probs=62.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCC--C---CeEEEEEECCccCH--HHHHHHHHHHhCCCCCCCCCCCHHHH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKD--F---DYVIWVVVSKDLQL--EKIQETIGKKIGLCNDSWKNKSLEEK 163 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~--f---~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~ 163 (814)
.-.+++|.|+.|.|||||++.++.......+. + ..+.++ .+.... ..+...+... .. ..-..-+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~--~~LS~G~~~ 98 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WD--DVLSGGEQQ 98 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CC--CCCCHHHHH
Confidence 34689999999999999999998875111110 0 112222 222111 1222222210 11 112233334
Q ss_pred HHHHHHHhccCceEEEEccccCccc------cccccccCCCCcEEEEecCCccccccCCccceEEe
Q 003513 164 AHDIFKTLSKKKFALLLDDLWERVD------LKKIGVPLPKNSAVVFTTRFVDVCGGMEARRMFKV 223 (814)
Q Consensus 164 ~~~l~~~l~~~~~LlVlDdv~~~~~------~~~~~~~~~~~~~iiiTtR~~~~~~~~~~~~~~~l 223 (814)
.-.+.+.+-.++-++++|+-.+.-+ +.++.... +..||++|.+..... ..++++.+
T Consensus 99 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~--~~d~i~~l 160 (166)
T cd03223 99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK--FHDRVLDL 160 (166)
T ss_pred HHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh--hCCEEEEE
Confidence 4455666667788899999754322 22221222 456777777665432 23444444
No 355
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.72 E-value=0.03 Score=55.74 Aligned_cols=102 Identities=14% Similarity=0.140 Sum_probs=60.3
Q ss_pred CcccchhHHHHHHHHHHhc----C--CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHH
Q 003513 70 PTVVGLQSQLEQVWRCLVQ----E--PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQET 143 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~----~--~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 143 (814)
..++|..-.++.|+..+.+ . .+.-+++++|..|+||.-+++.+++...+..-+-+.| ..
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V---------------~~ 146 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFV---------------HH 146 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhH---------------HH
Confidence 4578877777777777754 2 3566999999999999999999999873322222211 11
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHhc-cCceEEEEccccCc
Q 003513 144 IGKKIGLCNDSWKNKSLEEKAHDIFKTLS-KKKFALLLDDLWER 186 (814)
Q Consensus 144 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~ 186 (814)
+......+.......--+++...+++.++ -+|-|+|+|+++..
T Consensus 147 fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 147 FVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred hhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 11112111110001112233344444443 38999999999865
No 356
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.72 E-value=0.012 Score=64.25 Aligned_cols=101 Identities=20% Similarity=0.206 Sum_probs=53.9
Q ss_pred HHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEE-ECCc-cCHHHHHHHHHHHhCCCCCCCCCCC
Q 003513 82 VWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVV-VSKD-LQLEKIQETIGKKIGLCNDSWKNKS 159 (814)
Q Consensus 82 l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~-~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~ 159 (814)
+++.+..=+.-....|+|++|+|||||++.+++.... .+-+..+++. +... ..+.++.+.+-..+-... .+...
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~--n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT--~D~p~ 481 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITT--NNPECHLMVVLVDERPEEVTDMQRSVKGEVIAST--FDRPP 481 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhh--cCCCeEEEEEEEeCchhhHHHHHHhccceEEEEC--CCCCH
Confidence 4444443224467889999999999999999997732 2333343333 3332 234444444311111110 01111
Q ss_pred -----HHHHHHHHHHHh--ccCceEEEEccccCc
Q 003513 160 -----LEEKAHDIFKTL--SKKKFALLLDDLWER 186 (814)
Q Consensus 160 -----~~~~~~~l~~~l--~~~~~LlVlDdv~~~ 186 (814)
....+-.+.+++ .++.+||++|++...
T Consensus 482 ~~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 482 SDHTTVAELAIERAKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchHH
Confidence 111222234444 579999999998644
No 357
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.71 E-value=0.04 Score=60.69 Aligned_cols=95 Identities=23% Similarity=0.327 Sum_probs=53.5
Q ss_pred HHHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCC---C
Q 003513 80 EQVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDS---W 155 (814)
Q Consensus 80 ~~l~~~L~~~-~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~ 155 (814)
..+-+.|..+ ..-.++.|.|.+|+|||||+.+++.... ..-..++|++.... ..++.. -+.+++...+. .
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a---~~g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~ 154 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLA---KNQMKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVL 154 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEc
Confidence 3343444433 3457999999999999999999988772 22246788876543 344332 23344433211 0
Q ss_pred CCCCHHHHHHHHHHHhc-cCceEEEEcccc
Q 003513 156 KNKSLEEKAHDIFKTLS-KKKFALLLDDLW 184 (814)
Q Consensus 156 ~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~ 184 (814)
...+.++ +.+.++ .+.-++|+|.+.
T Consensus 155 ~e~~~~~----I~~~i~~~~~~~vVIDSIq 180 (454)
T TIGR00416 155 SETNWEQ----ICANIEEENPQACVIDSIQ 180 (454)
T ss_pred CCCCHHH----HHHHHHhcCCcEEEEecch
Confidence 1223333 333332 255678888864
No 358
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.71 E-value=0.047 Score=53.32 Aligned_cols=98 Identities=23% Similarity=0.337 Sum_probs=57.5
Q ss_pred HHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCc-cCHHHHHHHHHHHhCCCC-----CCCC
Q 003513 83 WRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKD-LQLEKIQETIGKKIGLCN-----DSWK 156 (814)
Q Consensus 83 ~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-----~~~~ 156 (814)
++.|..=..-..++|.|.+|+|||+|+.++++.. . -+.++++.+.+. .++.++.+.+...-.... .. .
T Consensus 6 ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~---~--~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t-~ 79 (215)
T PF00006_consen 6 IDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQ---D--ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAAT-S 79 (215)
T ss_dssp HHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHC---T--TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEE-T
T ss_pred eccccccccCCEEEEEcCcccccchhhHHHHhcc---c--ccceeeeeccccchhHHHHHHHHhhccccccccccccc-c
Confidence 4444431123678999999999999999999987 2 244577777654 456666666644311110 00 1
Q ss_pred CCCHHHH------HHHHHHHh--ccCceEEEEccccCc
Q 003513 157 NKSLEEK------AHDIFKTL--SKKKFALLLDDLWER 186 (814)
Q Consensus 157 ~~~~~~~------~~~l~~~l--~~~~~LlVlDdv~~~ 186 (814)
....... .-.+.+++ +++++|+|+||+...
T Consensus 80 ~~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dsltr~ 117 (215)
T PF00006_consen 80 DEPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLTRW 117 (215)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHHHH
T ss_pred hhhHHHHhhhhccchhhhHHHhhcCCceeehhhhhHHH
Confidence 1111111 11223333 589999999998543
No 359
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.69 E-value=0.019 Score=65.43 Aligned_cols=74 Identities=15% Similarity=0.193 Sum_probs=57.5
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhC
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIG 149 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 149 (814)
..++|.++.++.|...+... +.+.++|++|+||||+|+.+++... ..+++.++|..- ...+...+.+.+..++|
T Consensus 31 ~~vigq~~a~~~L~~~~~~~---~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR---RHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPN-PEDPNNPKIRTVPAGKG 104 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC---CeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeC-CCcchHHHHHHHHHhcC
Confidence 46899999999888777655 4789999999999999999998862 334677888755 44467777777776665
No 360
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.68 E-value=0.065 Score=53.42 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=33.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETI 144 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 144 (814)
.-.++.|.|..|.||||+|.+++....+ .-..+++++... +..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~---~g~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQ---NGYSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---CCCcEEEEeCCC--CHHHHHHHH
Confidence 3469999999999999998777665521 224567776333 456666665
No 361
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.67 E-value=0.044 Score=51.92 Aligned_cols=120 Identities=18% Similarity=0.157 Sum_probs=61.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcc--CCCC---C--CeEEEEEECCccCHHHHHHHHHHHhCCCCC--C--CCCCC-
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVD--NPKD---F--DYVIWVVVSKDLQLEKIQETIGKKIGLCND--S--WKNKS- 159 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~--~~~~---f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~--~~~~~- 159 (814)
-.+++|+|+.|+|||||.+.+..+.-+ .... + ..+.|+ .+ .+.++.+++... . ...-+
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 468999999999999999988632100 0101 1 012332 11 456666665421 0 01111
Q ss_pred HHHHHHHHHHHhccC--ceEEEEccccCcc------ccccccccCC-CCcEEEEecCCccccccCCccceEEe
Q 003513 160 LEEKAHDIFKTLSKK--KFALLLDDLWERV------DLKKIGVPLP-KNSAVVFTTRFVDVCGGMEARRMFKV 223 (814)
Q Consensus 160 ~~~~~~~l~~~l~~~--~~LlVlDdv~~~~------~~~~~~~~~~-~~~~iiiTtR~~~~~~~~~~~~~~~l 223 (814)
-+...-.+...+-.+ +-++++|+....- .+......+. .|..||++|.+...... .+.++.+
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 222233344555556 7788899975431 1222111111 36778888887665432 3444444
No 362
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.67 E-value=0.063 Score=54.39 Aligned_cols=92 Identities=20% Similarity=0.121 Sum_probs=57.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003513 90 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFK 169 (814)
Q Consensus 90 ~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 169 (814)
+.-+++=|+|+.|.||||+|.+++-.. ......++|++....++++.+..--...+.- .--....+.++....+..
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~-l~v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQLGVDLLDN-LLVSQPDTGEQQLEIAEK 133 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHHHHHhhhcc-eeEecCCCHHHHHHHHHH
Confidence 456799999999999999999987776 3344489999999988877664333221110 000123344443333333
Q ss_pred ---HhccCceEEEEccccC
Q 003513 170 ---TLSKKKFALLLDDLWE 185 (814)
Q Consensus 170 ---~l~~~~~LlVlDdv~~ 185 (814)
....+--|+|+|.|-.
T Consensus 134 ~~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 134 LARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HHHhccCCCCEEEEecCcc
Confidence 3333356899998753
No 363
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.62 E-value=0.056 Score=50.23 Aligned_cols=121 Identities=20% Similarity=0.222 Sum_probs=69.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEE---C------------------Ccc--------------
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVV---S------------------KDL-------------- 135 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~---~------------------~~~-------------- 135 (814)
.-.++.|+|++|.||||+.+.+|... + .-.+.+|+.- + +++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e-~---pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~ 102 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEE-R---PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL 102 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhh-c---CCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhh
Confidence 34689999999999999999999886 2 1123444421 0 000
Q ss_pred -------CHHHHHH---HHHHHhCCCCC----CCCCCCHHHHHHHHHHHhccCceEEEEcccc----Ccccc--cccccc
Q 003513 136 -------QLEKIQE---TIGKKIGLCND----SWKNKSLEEKAHDIFKTLSKKKFALLLDDLW----ERVDL--KKIGVP 195 (814)
Q Consensus 136 -------~~~~~~~---~i~~~l~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~----~~~~~--~~~~~~ 195 (814)
...++.+ +.++..|+... ...-..-++..-.|.+.+-+++-+|+-|.-. -+-.| ..+...
T Consensus 103 pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfee 182 (223)
T COG2884 103 PLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEE 182 (223)
T ss_pred hhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHH
Confidence 1122222 23333343321 0122334455556777777888899998753 11111 122222
Q ss_pred CCC-CcEEEEecCCccccccC
Q 003513 196 LPK-NSAVVFTTRFVDVCGGM 215 (814)
Q Consensus 196 ~~~-~~~iiiTtR~~~~~~~~ 215 (814)
+.. |..||++|-+..+...+
T Consensus 183 inr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 183 INRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HhhcCcEEEEEeccHHHHHhc
Confidence 333 99999999998876655
No 364
>PRK15453 phosphoribulokinase; Provisional
Probab=95.61 E-value=0.065 Score=53.94 Aligned_cols=80 Identities=15% Similarity=0.120 Sum_probs=46.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECC--ccCHHHHHHHH--HHHhCCCCCC--CCCCCHHHHH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSK--DLQLEKIQETI--GKKIGLCNDS--WKNKSLEEKA 164 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i--~~~l~~~~~~--~~~~~~~~~~ 164 (814)
...+|+|.|.+|+||||+|+.+++.+ ...-..+..++... ..+..+....+ .++-+.+-+. .+..+.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if---~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF---RRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH---hhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 45799999999999999999999877 22212244444332 12333332222 2222222222 3566777777
Q ss_pred HHHHHHhcc
Q 003513 165 HDIFKTLSK 173 (814)
Q Consensus 165 ~~l~~~l~~ 173 (814)
..++++.++
T Consensus 81 ~~l~~l~~~ 89 (290)
T PRK15453 81 QLFREYGET 89 (290)
T ss_pred HHHHHHhcC
Confidence 777776554
No 365
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.60 E-value=0.073 Score=52.14 Aligned_cols=62 Identities=26% Similarity=0.369 Sum_probs=38.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEE-------ECCccCHHHH--HHHHHHHhCCCCC
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVV-------VSKDLQLEKI--QETIGKKIGLCND 153 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~-------~~~~~~~~~~--~~~i~~~l~~~~~ 153 (814)
...+|.++||+|+||||..+.++.... .+..-..++-++ ..-+.++++. .+...++-++..+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~-~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPN 88 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLH-AKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPN 88 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHh-hccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCC
Confidence 456899999999999999999988872 222223444443 1223344433 4566666665543
No 366
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.60 E-value=0.064 Score=57.41 Aligned_cols=90 Identities=20% Similarity=0.212 Sum_probs=53.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCC-CCCCeEEEEEECCcc-CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNP-KDFDYVIWVVVSKDL-QLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIF 168 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~-~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 168 (814)
..++|.++|+.|+||||.+..++..+.... ..-..+..+++.... ....-++..++.++++.. ...+.......+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHHH
Confidence 357999999999999999999988762111 123355555554321 122336666776776431 2223344333333
Q ss_pred HHhccCceEEEEcccc
Q 003513 169 KTLSKKKFALLLDDLW 184 (814)
Q Consensus 169 ~~l~~~~~LlVlDdv~ 184 (814)
+ + .+.-++++|-.-
T Consensus 251 ~-~-~~~DlVLIDTaG 264 (388)
T PRK12723 251 Q-S-KDFDLVLVDTIG 264 (388)
T ss_pred H-h-CCCCEEEEcCCC
Confidence 3 2 345688889873
No 367
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.59 E-value=0.027 Score=55.32 Aligned_cols=26 Identities=38% Similarity=0.537 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
...+|+|+|++|+||||||+.++...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999876
No 368
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.59 E-value=0.034 Score=53.00 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
...+|+|+|++|+||||+|+.++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999999987
No 369
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.57 E-value=0.028 Score=51.19 Aligned_cols=42 Identities=31% Similarity=0.349 Sum_probs=32.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHH
Q 003513 95 IGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQE 142 (814)
Q Consensus 95 i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 142 (814)
|.|+|++|+|||+||+.+++.. .. ...-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~---~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GR---PVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TC---EEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hc---ceEEEEecccccccccee
Confidence 6799999999999999999987 22 344567777777777654
No 370
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.56 E-value=0.0073 Score=52.64 Aligned_cols=28 Identities=36% Similarity=0.495 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhccCCCCCCe
Q 003513 95 IGLYGMGGVGKTTLLTQINNKFVDNPKDFDY 125 (814)
Q Consensus 95 i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~ 125 (814)
|.|+|.+|+||||+|+.++... ...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCceeE
Confidence 6799999999999999999998 666653
No 371
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.56 E-value=0.0089 Score=51.51 Aligned_cols=22 Identities=36% Similarity=0.714 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 003513 95 IGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 95 i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
|.|+|++|+|||++|+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999998887
No 372
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.56 E-value=0.021 Score=60.70 Aligned_cols=104 Identities=15% Similarity=0.152 Sum_probs=58.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHH---HHHHHhCCCCCCCCCCCHHHHHHHHH
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQE---TIGKKIGLCNDSWKNKSLEEKAHDIF 168 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~---~i~~~l~~~~~~~~~~~~~~~~~~l~ 168 (814)
...+.|.|+.|.||||+++.+.... .......++. +.++. +.... .+..+-.. ..+.......+.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~t-iEdp~--E~~~~~~~~~i~q~ev------g~~~~~~~~~l~ 189 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIIT-IEDPI--EYVHRNKRSLINQREV------GLDTLSFANALR 189 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEE-EcCCh--hhhccCccceEEcccc------CCCCcCHHHHHH
Confidence 4789999999999999999998876 3333344443 22221 11100 00000000 111123445567
Q ss_pred HHhccCceEEEEccccCccccccccccCCCCcEEEEecC
Q 003513 169 KTLSKKKFALLLDDLWERVDLKKIGVPLPKNSAVVFTTR 207 (814)
Q Consensus 169 ~~l~~~~~LlVlDdv~~~~~~~~~~~~~~~~~~iiiTtR 207 (814)
..++..+=.+++|.+.+.+...........|..++.|.-
T Consensus 190 ~~lr~~pd~i~vgEird~~~~~~~l~aa~tGh~v~~T~H 228 (343)
T TIGR01420 190 AALREDPDVILIGEMRDLETVELALTAAETGHLVFGTLH 228 (343)
T ss_pred HhhccCCCEEEEeCCCCHHHHHHHHHHHHcCCcEEEEEc
Confidence 778889999999999876654432222223555555554
No 373
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.55 E-value=0.11 Score=54.80 Aligned_cols=72 Identities=25% Similarity=0.261 Sum_probs=41.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCc-cCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKD-LQLEKIQETIGKKIGLCNDSWKNKSLEEKAHD 166 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 166 (814)
-++|.++|+.|+||||-...++.++. ....-..+..|+.... ....+-++..++-++++.. ...+..+....
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~-~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~--vv~~~~el~~a 275 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV-MLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE--VVYSPKELAEA 275 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH-hhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE--EecCHHHHHHH
Confidence 68999999999999755444555441 1233345667765432 2334445666777776542 23344444333
No 374
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.54 E-value=0.043 Score=57.40 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 003513 95 IGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 95 i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
+++.|++|.||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999887
No 375
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.53 E-value=0.035 Score=59.00 Aligned_cols=47 Identities=21% Similarity=0.247 Sum_probs=38.4
Q ss_pred CcccchhHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 70 PTVVGLQSQLEQVWRCLVQE-------------PAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~-------------~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
..++|.++.++.+.-.+... -..+.|.++|++|+|||++|+.++...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999998887666531 123688999999999999999999987
No 376
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.53 E-value=0.024 Score=50.36 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 77 SQLEQVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 77 ~~~~~l~~~L~~~-~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
++.+++-+.|... +.-.+|.+.|.-|.||||+++.++...
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3444554544432 234689999999999999999999986
No 377
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.52 E-value=0.037 Score=56.29 Aligned_cols=40 Identities=23% Similarity=0.348 Sum_probs=31.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECC
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSK 133 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 133 (814)
.-.++.|.|++|+|||++|.+++.... ..-+.+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecC
Confidence 457999999999999999999877652 2345788888764
No 378
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.51 E-value=0.023 Score=56.75 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 90 PAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 90 ~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
+...+++|.|+.|.|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999887
No 379
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.51 E-value=0.043 Score=49.13 Aligned_cols=117 Identities=19% Similarity=0.364 Sum_probs=41.9
Q ss_pred ccCcccEEEEEcccCCCcCCC--CCCCCCcccEEEcccCCCccccchhhccCCcccEEEccCCccccccC-ccccccccc
Q 003513 423 VRGWEMVRRLSLMKNSIENLP--TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLP-MGISKLVSL 499 (814)
Q Consensus 423 ~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~l~~L 499 (814)
+.++.+++.+.+.. .+..++ .+..+++|+.+.+..+ +..+....|.+++.|+.+.+..+ +..++ ..+..+.+|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--ccccccccccccccc
Confidence 34444555555542 333333 3455555666666553 55555555556655666666432 22222 233445556
Q ss_pred CEEEecCCCCcccCh-hhhcCCCCceeccccccccceeCccccCCCccc
Q 003513 500 QLLDISNTSVTELPE-DLKALVNLKCLNLVWAKELVVVPQQLLSNFSRL 547 (814)
Q Consensus 500 ~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L 547 (814)
+.+.+..+ +..++. .+.++ +|+.+.+..+ +..++...+.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence 66665443 443332 23343 5555555431 234444444444444
No 380
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.51 E-value=0.034 Score=59.02 Aligned_cols=65 Identities=26% Similarity=0.294 Sum_probs=50.6
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHH
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQET 143 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 143 (814)
..++|+++.+..+...+..+ +.+.+.|++|+|||+||+.++... .. ..+++.+.......++...
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~---~~vll~G~PG~gKT~la~~lA~~l---~~---~~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG---GHVLLEGPPGVGKTLLARALARAL---GL---PFVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC---CCEEEECCCCccHHHHHHHHHHHh---CC---CeEEEecCCCCCHHHhcCc
Confidence 34899999999988888877 678899999999999999999998 32 3456666666666655433
No 381
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.26 Score=47.66 Aligned_cols=157 Identities=17% Similarity=0.247 Sum_probs=82.6
Q ss_pred ccchhHHHHHHHHHHh----c-------C-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHH
Q 003513 72 VVGLQSQLEQVWRCLV----Q-------E-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEK 139 (814)
Q Consensus 72 ~vGr~~~~~~l~~~L~----~-------~-~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 139 (814)
+=|.|-.+++|.+... . + ...+-|.++|++|.|||.||++|++.- ...| +.+... +-
T Consensus 157 iggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t---~a~f-----irvvgs---ef 225 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAF-----IRVVGS---EF 225 (408)
T ss_pred cccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc---chhe-----eeeccH---HH
Confidence 3456666666655432 1 1 256778899999999999999999986 4444 322211 11
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-ccCceEEEEccccCcc------------cccc----c---cccCCC-
Q 003513 140 IQETIGKKIGLCNDSWKNKSLEEKAHDIFKTL-SKKKFALLLDDLWERV------------DLKK----I---GVPLPK- 198 (814)
Q Consensus 140 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~------------~~~~----~---~~~~~~- 198 (814)
+++ .+|-. . ..+..+.+.- .+-+.++.+|.++... .++. + ...|..
T Consensus 226 vqk----ylgeg--------p-rmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~ 292 (408)
T KOG0727|consen 226 VQK----YLGEG--------P-RMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT 292 (408)
T ss_pred HHH----HhccC--------c-HHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc
Confidence 221 22211 1 1222233322 3568889999986431 1111 1 111222
Q ss_pred -CcEEEEecCCccc-----cccCCccceEEeccCCHHhHHHHHHHHhccccccCCCChHH
Q 003513 199 -NSAVVFTTRFVDV-----CGGMEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPE 252 (814)
Q Consensus 199 -~~~iiiTtR~~~~-----~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~ 252 (814)
+.++|.+|..... .+.-..+..++..--+..+-.-.|..........++-++++
T Consensus 293 ~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~ 352 (408)
T KOG0727|consen 293 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLED 352 (408)
T ss_pred cceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHH
Confidence 7788877653332 22222345567665555666666766655444334434443
No 382
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.23 Score=55.59 Aligned_cols=170 Identities=15% Similarity=0.136 Sum_probs=89.9
Q ss_pred CcccchhHHHHHHHH---HHhcC--------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHH
Q 003513 70 PTVVGLQSQLEQVWR---CLVQE--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLE 138 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~---~L~~~--------~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 138 (814)
.++-|.|+.++++.+ .|.+. .-.+-|.++|++|.|||.||++++.+. .+ ..| ..|...-++
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-~V-PFf------~iSGS~FVe 221 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-GV-PFF------SISGSDFVE 221 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-CC-Cce------eccchhhhh
Confidence 456888876665554 55542 124578899999999999999999987 32 222 122111010
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhccCceEEEEccccCccc----------------cccc---cccCCC-
Q 003513 139 KIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWERVD----------------LKKI---GVPLPK- 198 (814)
Q Consensus 139 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------------~~~~---~~~~~~- 198 (814)
++ .|. ......+.+.+..++-++++++|.++.... +.++ ...+..
T Consensus 222 -mf------VGv--------GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 222 -MF------VGV--------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred -hh------cCC--------CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 00 111 222333445555667789999999875421 1111 122332
Q ss_pred -CcEEEEecCCcccc-----ccCCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChH
Q 003513 199 -NSAVVFTTRFVDVC-----GGMEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPL 266 (814)
Q Consensus 199 -~~~iiiTtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 266 (814)
|-.|+..|..++|. +.-.-+..+.++.-+-..-.++++-++........-++.. |++.+-|.--
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~----iAr~tpGfsG 356 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKK----IARGTPGFSG 356 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHH----HhhhCCCccc
Confidence 33344444444443 2223345666666666666667765554333222222222 6666666543
No 383
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.50 E-value=0.012 Score=55.82 Aligned_cols=47 Identities=30% Similarity=0.419 Sum_probs=32.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHH
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETI 144 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 144 (814)
..+|+|-||-|+||||||+.+++.. + |. +++-.+.+++-++.....+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l---~--~~-~~~E~vednp~L~~FY~d~ 50 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL---G--FK-VFYELVEDNPFLDLFYEDP 50 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh---C--Cc-eeeecccCChHHHHHHHhH
Confidence 4789999999999999999999998 2 22 2333344444444444444
No 384
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.49 E-value=0.051 Score=59.32 Aligned_cols=87 Identities=22% Similarity=0.249 Sum_probs=49.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccC-HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQ-LEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKT 170 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 170 (814)
.+++.++|++|+||||++..++.... .......+..++...... ...-++..++.++++.. ...+..+....+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~-~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA-LLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH-
Confidence 36899999999999999999888762 012234566776543211 12233444555555432 12333444444433
Q ss_pred hccCceEEEEccc
Q 003513 171 LSKKKFALLLDDL 183 (814)
Q Consensus 171 l~~~~~LlVlDdv 183 (814)
+. ..=++|+|..
T Consensus 297 ~~-~~DlVlIDt~ 308 (424)
T PRK05703 297 LR-DCDVILIDTA 308 (424)
T ss_pred hC-CCCEEEEeCC
Confidence 22 3467888865
No 385
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.48 E-value=0.013 Score=57.66 Aligned_cols=26 Identities=38% Similarity=0.556 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
+..+|+|.|.+|+||||||+.++..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999886
No 386
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.48 E-value=0.012 Score=53.88 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 003513 94 IIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 94 ~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
+|.+.|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 58899999999999999999876
No 387
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.47 E-value=0.15 Score=53.26 Aligned_cols=89 Identities=18% Similarity=0.216 Sum_probs=48.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCH---HHHHHHHHHHhCCCCCC-CCCCCHH-HHHH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQL---EKIQETIGKKIGLCNDS-WKNKSLE-EKAH 165 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~---~~~~~~i~~~l~~~~~~-~~~~~~~-~~~~ 165 (814)
...+++++|++|+||||++..++... ...-..+..++.. .+.. ++ +.......+++.-. ....+.. ....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l---~~~g~~V~Li~~D-~~r~~a~eq-l~~~a~~~~i~~~~~~~~~dpa~~v~~ 187 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY---KAQGKKVLLAAGD-TFRAAAIEQ-LQVWGERVGVPVIAQKEGADPASVAFD 187 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH---HhcCCeEEEEecC-ccchhhHHH-HHHHHHHcCceEEEeCCCCCHHHHHHH
Confidence 45799999999999999999999887 2222345545432 2222 22 22334444433210 0112222 2223
Q ss_pred HHHHHhccCceEEEEcccc
Q 003513 166 DIFKTLSKKKFALLLDDLW 184 (814)
Q Consensus 166 ~l~~~l~~~~~LlVlDdv~ 184 (814)
.+.....+.-=++|+|-.-
T Consensus 188 ~l~~~~~~~~D~ViIDTaG 206 (318)
T PRK10416 188 AIQAAKARGIDVLIIDTAG 206 (318)
T ss_pred HHHHHHhCCCCEEEEeCCC
Confidence 3443344444578888863
No 388
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.47 E-value=0.023 Score=53.40 Aligned_cols=110 Identities=22% Similarity=0.246 Sum_probs=60.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCc--cCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKD--LQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFK 169 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 169 (814)
-.+++|.|+.|.|||||.+.++... ....+.+++....- .+..... ...++... .-..-+...-.+.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~~---qLS~G~~qrl~lar 95 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDAR---RAGIAMVY---QLSVGERQMVEIAR 95 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHHH---hcCeEEEE---ecCHHHHHHHHHHH
Confidence 3689999999999999999998775 23344555532111 1111111 11111100 11223333444556
Q ss_pred HhccCceEEEEccccCccc------cccccccC-CCCcEEEEecCCccc
Q 003513 170 TLSKKKFALLLDDLWERVD------LKKIGVPL-PKNSAVVFTTRFVDV 211 (814)
Q Consensus 170 ~l~~~~~LlVlDdv~~~~~------~~~~~~~~-~~~~~iiiTtR~~~~ 211 (814)
.+-.++-++++|+....-| +..+...+ ..+..||++|.+...
T Consensus 96 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 96 ALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred HHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 6667788999999754322 21221222 236678888887653
No 389
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.46 E-value=0.053 Score=57.94 Aligned_cols=83 Identities=16% Similarity=0.195 Sum_probs=44.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCcc-CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDL-QLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKT 170 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 170 (814)
..++.++|++|+||||++..++.... .... ..+..++..... .....++..++.++++.. .... ...+.+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~-~~~G-~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~-----~~~~-~~~l~~~ 294 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYF-LHMG-KSVSLYTTDNYRIAAIEQLKRYADTMGMPFY-----PVKD-IKKFKET 294 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-HhcC-CeEEEecccchhhhHHHHHHHHHHhcCCCee-----ehHH-HHHHHHH
Confidence 46899999999999999999987541 1222 234444432211 122334445555555321 1111 2234444
Q ss_pred hcc-CceEEEEcc
Q 003513 171 LSK-KKFALLLDD 182 (814)
Q Consensus 171 l~~-~~~LlVlDd 182 (814)
+.. ..=++|+|-
T Consensus 295 l~~~~~D~VLIDT 307 (432)
T PRK12724 295 LARDGSELILIDT 307 (432)
T ss_pred HHhCCCCEEEEeC
Confidence 432 334588884
No 390
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.46 E-value=0.048 Score=54.83 Aligned_cols=96 Identities=14% Similarity=0.136 Sum_probs=58.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcc-CCCCCCeEEEEEECCc-cCHHHHHHHHHHHhCCCC-----CCCCCCCHHH-
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVD-NPKDFDYVIWVVVSKD-LQLEKIQETIGKKIGLCN-----DSWKNKSLEE- 162 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~-~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~- 162 (814)
.-+.++|.|..|+|||+|+.+++++..- .+.+-+.++++-+.+. .+..++...+.+.-.+.. ...+.....+
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 3467899999999999999999887510 1123467788877654 356677776665422211 0011111111
Q ss_pred ----HHHHHHHHhc---cCceEEEEccccCc
Q 003513 163 ----KAHDIFKTLS---KKKFALLLDDLWER 186 (814)
Q Consensus 163 ----~~~~l~~~l~---~~~~LlVlDdv~~~ 186 (814)
..-.+.++++ ++++|+++||+...
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 1233455552 68999999998654
No 391
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.45 E-value=0.044 Score=62.76 Aligned_cols=75 Identities=16% Similarity=0.178 Sum_probs=51.8
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhC
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIG 149 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 149 (814)
..++|.++.++.+...+... +.+.++|++|+||||+|+.+++... ...|..++++. ....+...+++.++..++
T Consensus 18 ~~viG~~~a~~~l~~a~~~~---~~~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~~-n~~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK---RNVLLIGEPGVGKSMLAKAMAELLP--DEELEDILVYP-NPEDPNMPRIVEVPAGEG 91 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC---CCEEEECCCCCCHHHHHHHHHHHcC--chhheeEEEEe-CCCCCchHHHHHHHHhhc
Confidence 46899999888887777665 3666999999999999999998872 22333334332 223345566777776665
Q ss_pred C
Q 003513 150 L 150 (814)
Q Consensus 150 ~ 150 (814)
.
T Consensus 92 ~ 92 (608)
T TIGR00764 92 R 92 (608)
T ss_pred h
Confidence 3
No 392
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=95.45 E-value=0.34 Score=50.69 Aligned_cols=58 Identities=9% Similarity=-0.062 Sum_probs=35.0
Q ss_pred cceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHHHHh
Q 003513 218 RRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIGRAM 275 (814)
Q Consensus 218 ~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 275 (814)
..+++++..+.+|+.++..-+....-......-++--+++.=..+|+|--+..++..+
T Consensus 403 f~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 403 FVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred cCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcCCCHHHHHHHHHhc
Confidence 3568899999999999876654322111011113445566666789996556555544
No 393
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.43 E-value=0.045 Score=58.25 Aligned_cols=48 Identities=23% Similarity=0.272 Sum_probs=39.3
Q ss_pred CCcccchhHHHHHHHHHHhc---------C----CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 69 EPTVVGLQSQLEQVWRCLVQ---------E----PAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 69 ~~~~vGr~~~~~~l~~~L~~---------~----~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
...++|.++.++.+..++.. + ...+.|.++|+.|+|||++|+.++...
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999887743 1 013688999999999999999999987
No 394
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.43 E-value=0.033 Score=56.66 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhc
Q 003513 93 GIIGLYGMGGVGKTTLLTQINNKFV 117 (814)
Q Consensus 93 ~~i~i~G~gGiGKTtLa~~~~~~~~ 117 (814)
+.|.|+|.+|+||||+|+++...+.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 5789999999999999999999873
No 395
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.41 E-value=0.045 Score=50.12 Aligned_cols=100 Identities=23% Similarity=0.228 Sum_probs=55.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKT 170 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 170 (814)
.-.+++|.|..|.|||||++.++... ....+.+|++... .++.-. .-..-+...-.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~~~~-------------~i~~~~---~lS~G~~~rv~lara 84 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL----EPDEGIVTWGSTV-------------KIGYFE---QLSGGEKMRLALAKL 84 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC----CCCceEEEECCeE-------------EEEEEc---cCCHHHHHHHHHHHH
Confidence 34789999999999999999998875 2223444443110 000000 011122333345556
Q ss_pred hccCceEEEEccccCcc------ccccccccCCCCcEEEEecCCcccc
Q 003513 171 LSKKKFALLLDDLWERV------DLKKIGVPLPKNSAVVFTTRFVDVC 212 (814)
Q Consensus 171 l~~~~~LlVlDdv~~~~------~~~~~~~~~~~~~~iiiTtR~~~~~ 212 (814)
+-.++-++++|+....- .+.++.... +..||++|.+....
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 66677899999975431 122221112 35677777765543
No 396
>PRK05439 pantothenate kinase; Provisional
Probab=95.40 E-value=0.17 Score=52.37 Aligned_cols=27 Identities=30% Similarity=0.350 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 90 PAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 90 ~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
+..-+|+|.|.+|+||||+|+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998866
No 397
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.39 E-value=0.069 Score=57.64 Aligned_cols=92 Identities=23% Similarity=0.246 Sum_probs=53.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCC-----CCCCCCCHHH---
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCN-----DSWKNKSLEE--- 162 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~--- 162 (814)
.-..++|.|..|+|||||++.++... .. ...++.....+...+.++.+..+..-++.. ...+......
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~---~~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT---DA-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC---CC-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 34689999999999999999888765 22 233444334444455666655444332211 0011111111
Q ss_pred --HHHHHHHHh--ccCceEEEEccccCc
Q 003513 163 --KAHDIFKTL--SKKKFALLLDDLWER 186 (814)
Q Consensus 163 --~~~~l~~~l--~~~~~LlVlDdv~~~ 186 (814)
.+-.+.+++ +++++|+++||+...
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 122345555 578999999998654
No 398
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.38 E-value=0.1 Score=53.48 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
...+|+|.|..|+||||+|+.+....
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999998887665
No 399
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.38 E-value=0.069 Score=52.78 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 003513 94 IIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 94 ~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
+|+|.|..|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 400
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.38 E-value=0.026 Score=53.69 Aligned_cols=115 Identities=21% Similarity=0.263 Sum_probs=60.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCC-CCC--CCCC---------CC
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGL-CND--SWKN---------KS 159 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~~--~~~~---------~~ 159 (814)
-.+++|+|+.|.|||||++.++... ....+.+++....-.... ..+...++. ..+ .... ..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~ 98 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL----KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSG 98 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCH
Confidence 4689999999999999999998865 123444554321110000 111111111 000 0000 11
Q ss_pred HHHHHHHHHHHhccCceEEEEccccCccc------cccccccCC-CCcEEEEecCCccccc
Q 003513 160 LEEKAHDIFKTLSKKKFALLLDDLWERVD------LKKIGVPLP-KNSAVVFTTRFVDVCG 213 (814)
Q Consensus 160 ~~~~~~~l~~~l~~~~~LlVlDdv~~~~~------~~~~~~~~~-~~~~iiiTtR~~~~~~ 213 (814)
-+...-.+...+..++-++++|+....-| +..+...+. .|..||++|.+.....
T Consensus 99 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 12223345666677889999999754322 222222221 2677888888765433
No 401
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.36 E-value=0.026 Score=58.59 Aligned_cols=49 Identities=27% Similarity=0.333 Sum_probs=36.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHH
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQET 143 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 143 (814)
.+++.+.|.||+||||+|.+.+-..+ .....+.-|......++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA---~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA---ESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH---HcCCcEEEEEeCCCCchHhhhcc
Confidence 57999999999999999999877773 22244777777666666666544
No 402
>PRK06762 hypothetical protein; Provisional
Probab=95.36 E-value=0.015 Score=54.95 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
..+|.|.|++|+||||+|+.++...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999886
No 403
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.36 E-value=0.041 Score=59.47 Aligned_cols=90 Identities=19% Similarity=0.197 Sum_probs=51.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHh-----CCCCCCCCCCCHH-----
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKI-----GLCNDSWKNKSLE----- 161 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-----~~~~~~~~~~~~~----- 161 (814)
-..++|+|..|+|||||++.++... .....++++...+..++.++........ +.-. ..+.....
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~-qsd~~~~~r~~~~ 239 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVA-TSDESPMMRRLAP 239 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEE-cCCCCHHHHHHHH
Confidence 3689999999999999999887654 2233555554434445555444333322 1100 00111111
Q ss_pred HHHHHHHHHh--ccCceEEEEccccCc
Q 003513 162 EKAHDIFKTL--SKKKFALLLDDLWER 186 (814)
Q Consensus 162 ~~~~~l~~~l--~~~~~LlVlDdv~~~ 186 (814)
...-.+.+++ +++++|+++||+...
T Consensus 240 ~~a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 240 LTATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchHHH
Confidence 1122244444 478999999998654
No 404
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.35 E-value=0.046 Score=50.39 Aligned_cols=23 Identities=35% Similarity=0.658 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 003513 94 IIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 94 ~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
+|.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999987
No 405
>PRK03839 putative kinase; Provisional
Probab=95.30 E-value=0.015 Score=55.76 Aligned_cols=23 Identities=43% Similarity=0.658 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 003513 94 IIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 94 ~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
.|.|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999987
No 406
>PRK06217 hypothetical protein; Validated
Probab=95.29 E-value=0.031 Score=53.68 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 93 GIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 93 ~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
..|.|.|.+|+||||+|++++...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999887
No 407
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.29 E-value=0.021 Score=58.39 Aligned_cols=58 Identities=22% Similarity=0.346 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHH
Q 003513 79 LEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQ 141 (814)
Q Consensus 79 ~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 141 (814)
...+++.+... -+-+.++|+.|+|||++++.+.... . ...| .+.-+..+...+...++
T Consensus 22 ~~~ll~~l~~~--~~pvLl~G~~GtGKT~li~~~l~~l-~-~~~~-~~~~~~~s~~Tts~~~q 79 (272)
T PF12775_consen 22 YSYLLDLLLSN--GRPVLLVGPSGTGKTSLIQNFLSSL-D-SDKY-LVITINFSAQTTSNQLQ 79 (272)
T ss_dssp HHHHHHHHHHC--TEEEEEESSTTSSHHHHHHHHHHCS-T-TCCE-EEEEEES-TTHHHHHHH
T ss_pred HHHHHHHHHHc--CCcEEEECCCCCchhHHHHhhhccC-C-cccc-ceeEeeccCCCCHHHHH
Confidence 34555555544 3567899999999999999988775 1 1221 23445555544444444
No 408
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.27 E-value=0.08 Score=53.29 Aligned_cols=91 Identities=14% Similarity=0.145 Sum_probs=51.7
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHhhhccCCCCCCeE-EEEEECCc-cCHHHHHHHHHHHhCCCC-----CCCCCCCHHH
Q 003513 91 AAGIIGLYGMGGVGKTTLL-TQINNKFVDNPKDFDYV-IWVVVSKD-LQLEKIQETIGKKIGLCN-----DSWKNKSLEE 162 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa-~~~~~~~~~~~~~f~~~-~wv~~~~~-~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~ 162 (814)
.-+.++|.|..|+|||+|| ..+.+.. . -+.+ +++-+... ....++.+.+.+.-.... ...+......
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~---~--~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK---G--KKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc---C--CCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 3467899999999999996 5555443 2 2333 55555544 456677776664322111 0111111111
Q ss_pred -----HHHHHHHHh--ccCceEEEEccccCc
Q 003513 163 -----KAHDIFKTL--SKKKFALLLDDLWER 186 (814)
Q Consensus 163 -----~~~~l~~~l--~~~~~LlVlDdv~~~ 186 (814)
.+-.+.+++ +++.+|+|+||+...
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 122334444 578999999998654
No 409
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.27 E-value=0.03 Score=60.20 Aligned_cols=91 Identities=22% Similarity=0.271 Sum_probs=53.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCc-cCHHHHHHHHHHHhCCCC-----CCCCCCCHHH--
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKD-LQLEKIQETIGKKIGLCN-----DSWKNKSLEE-- 162 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~-- 162 (814)
.-..++|.|..|+|||||++.++... ..+.++..-+... ..+.++...++..-+... ...+......
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 34679999999999999999998654 2245555655543 345556555544322211 0001111111
Q ss_pred ---HHHHHHHHh--ccCceEEEEccccCc
Q 003513 163 ---KAHDIFKTL--SKKKFALLLDDLWER 186 (814)
Q Consensus 163 ---~~~~l~~~l--~~~~~LlVlDdv~~~ 186 (814)
.+-.+.+++ +++++|+++||+...
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 122244555 579999999998654
No 410
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.26 E-value=0.015 Score=54.73 Aligned_cols=42 Identities=24% Similarity=0.184 Sum_probs=33.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCC-CCCCeEEEEEECCccC
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNP-KDFDYVIWVVVSKDLQ 136 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~-~~f~~~~wv~~~~~~~ 136 (814)
..++.+.|+.|+|||.+|+.+++.. . +.....+-++.+.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l---~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELL---FVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHH---T-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHh---ccCCccchHHHhhhcccc
Confidence 5688999999999999999999998 4 5556667777665443
No 411
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.25 E-value=0.016 Score=55.96 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
+.++|+|.|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999999775
No 412
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.25 E-value=0.0082 Score=34.69 Aligned_cols=16 Identities=38% Similarity=0.563 Sum_probs=6.4
Q ss_pred ccEEEccCCccccccCc
Q 003513 475 LTVLKMSDNIMLRQLPM 491 (814)
Q Consensus 475 L~~L~L~~~~~~~~lp~ 491 (814)
|++|||++| .++.+|.
T Consensus 2 L~~Ldls~n-~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPS 17 (22)
T ss_dssp ESEEEETSS-EESEEGT
T ss_pred ccEEECCCC-cCEeCCh
Confidence 344444444 3333433
No 413
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.22 E-value=0.03 Score=53.07 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 003513 94 IIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 94 ~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
.|.|.|++|.||||+|+.+++.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 414
>PRK14527 adenylate kinase; Provisional
Probab=95.18 E-value=0.036 Score=53.64 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
...+|.|+|++|+||||+|+.++...
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34789999999999999999998876
No 415
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.22 Score=55.57 Aligned_cols=148 Identities=20% Similarity=0.221 Sum_probs=82.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH-HH
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIF-KT 170 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~ 170 (814)
..-|.++|++|.|||.||-+++... . .-+|.+..+ + ++.. .+|. + ++.++.+. +.
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~---~-----~~fisvKGP---E-lL~K---yIGa--------S-Eq~vR~lF~rA 756 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNS---N-----LRFISVKGP---E-LLSK---YIGA--------S-EQNVRDLFERA 756 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhC---C-----eeEEEecCH---H-HHHH---Hhcc--------c-HHHHHHHHHHh
Confidence 3468899999999999999998886 2 335555443 2 2222 2221 2 33344444 44
Q ss_pred hccCceEEEEccccCcc-------------ccccccccCC-----CCcEEEE-ecCCccc----cccCCccceEEeccCC
Q 003513 171 LSKKKFALLLDDLWERV-------------DLKKIGVPLP-----KNSAVVF-TTRFVDV----CGGMEARRMFKVACLS 227 (814)
Q Consensus 171 l~~~~~LlVlDdv~~~~-------------~~~~~~~~~~-----~~~~iii-TtR~~~~----~~~~~~~~~~~l~~L~ 227 (814)
-.-+++++.||..+... .+.++.-.+. .|.-|+. |||..-+ .+.-.-++.+.-+.-+
T Consensus 757 ~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~ 836 (952)
T KOG0735|consen 757 QSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPD 836 (952)
T ss_pred hccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCC
Confidence 45699999999987541 1112211111 1555554 5664332 2222334455566667
Q ss_pred HHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHH
Q 003513 228 DEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLA 267 (814)
Q Consensus 228 ~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 267 (814)
+.|-.++|...+..-.... ....+-++.+.+|.--|
T Consensus 837 ~~eRl~il~~ls~s~~~~~----~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 837 EPERLEILQVLSNSLLKDT----DVDLECLAQKTDGFTGA 872 (952)
T ss_pred cHHHHHHHHHHhhccCCcc----ccchHHHhhhcCCCchh
Confidence 7788888877654322122 23345566777766544
No 416
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.17 E-value=0.093 Score=50.00 Aligned_cols=118 Identities=17% Similarity=0.191 Sum_probs=65.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEEC-------------------Ccc-----------------
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVS-------------------KDL----------------- 135 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~-------------------~~~----------------- 135 (814)
-.+++|+|+.|+|||||.+-+..-. ..-.+.+|++.. +.+
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE----~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLE----EPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCc----CCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 3689999999999999999775542 222344555421 111
Q ss_pred --------CHHHHHHHHHHHhCCCCCC----CCCCCHHHHHHHHHHHhccCceEEEEccccCccccccc------cccCC
Q 003513 136 --------QLEKIQETIGKKIGLCNDS----WKNKSLEEKAHDIFKTLSKKKFALLLDDLWERVDLKKI------GVPLP 197 (814)
Q Consensus 136 --------~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~------~~~~~ 197 (814)
..++....+++..|+.... ..-..-++..-.|.+.|.=++-++.||...+.-|-+-. ...+.
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA 183 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLA 183 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHH
Confidence 1344455556666654311 11223334444567777778889999998765332211 12222
Q ss_pred -CCcEEEEecCCccccc
Q 003513 198 -KNSAVVFTTRFVDVCG 213 (814)
Q Consensus 198 -~~~~iiiTtR~~~~~~ 213 (814)
.|-..|+.|-....+.
T Consensus 184 ~eGmTMivVTHEM~FAr 200 (240)
T COG1126 184 EEGMTMIIVTHEMGFAR 200 (240)
T ss_pred HcCCeEEEEechhHHHH
Confidence 2655555555444433
No 417
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.17 E-value=0.039 Score=52.73 Aligned_cols=25 Identities=40% Similarity=0.518 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
-.+++|.|+.|.|||||++.++...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998765
No 418
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.16 E-value=0.059 Score=58.23 Aligned_cols=91 Identities=16% Similarity=0.220 Sum_probs=53.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECC-ccCHHHHHHHHHHHhCCCC-----CCCCCCCHHH--
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSK-DLQLEKIQETIGKKIGLCN-----DSWKNKSLEE-- 162 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~-- 162 (814)
.-..++|+|..|+|||||+++++... . .+.++++-+.. ...+.++....+..-++.. ...+......
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~---~--~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA---D--ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc---C--CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 44688999999999999999998765 2 23445555544 3345455544443322211 0011111111
Q ss_pred ---HHHHHHHHh--ccCceEEEEccccCc
Q 003513 163 ---KAHDIFKTL--SKKKFALLLDDLWER 186 (814)
Q Consensus 163 ---~~~~l~~~l--~~~~~LlVlDdv~~~ 186 (814)
.+-.+.+++ +++++|+++||+...
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 122344555 579999999998654
No 419
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.15 E-value=0.042 Score=52.43 Aligned_cols=23 Identities=35% Similarity=0.751 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 003513 94 IIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 94 ~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
+|+|.|.+|+||||||+.++...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999987
No 420
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.14 E-value=0.035 Score=53.36 Aligned_cols=42 Identities=33% Similarity=0.424 Sum_probs=30.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCH
Q 003513 94 IIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQL 137 (814)
Q Consensus 94 ~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 137 (814)
.|+|+|-||+||||+|..++.... ..+-..+.-|+...++++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~--~~~~~~VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLL--SKGGYNVLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHH--hcCCceEEEEeCCCCCCh
Confidence 589999999999999999776662 222134666776666544
No 421
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.13 E-value=0.019 Score=56.80 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 003513 94 IIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 94 ~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
.|.|.|++|+||||+|+.+++.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999986
No 422
>PRK00625 shikimate kinase; Provisional
Probab=95.12 E-value=0.018 Score=54.28 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 003513 94 IIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 94 ~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
.|.|+|++|+||||+++.+++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999887
No 423
>PF13245 AAA_19: Part of AAA domain
Probab=95.12 E-value=0.05 Score=43.26 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=18.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
.+++.|.|++|.|||+++.......
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3678889999999995555554444
No 424
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=95.11 E-value=0.1 Score=52.46 Aligned_cols=101 Identities=21% Similarity=0.231 Sum_probs=56.8
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCC-------CCeEEEEEECCc-cCHHHHHHHHHHHhCCC
Q 003513 80 EQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKD-------FDYVIWVVVSKD-LQLEKIQETIGKKIGLC 151 (814)
Q Consensus 80 ~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~-------f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~ 151 (814)
+-|-+++.++ -++.|+|.||+|||||+...+=.....++- -..+++|++... .++-.=++.+..+++++
T Consensus 80 ~lId~~fr~g---~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLs 156 (402)
T COG3598 80 QLIDEFFRKG---YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLS 156 (402)
T ss_pred hhhhHHhhcC---eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCC
Confidence 3344444444 456678999999999997665443222222 246777776543 24455567777777775
Q ss_pred CCCCCCCCH--------------HHHHHHHHHHhcc-CceEEEEccc
Q 003513 152 NDSWKNKSL--------------EEKAHDIFKTLSK-KKFALLLDDL 183 (814)
Q Consensus 152 ~~~~~~~~~--------------~~~~~~l~~~l~~-~~~LlVlDdv 183 (814)
..+....+. ..+.+++...+.+ ++-++|+|-.
T Consensus 157 Padvrn~dltd~~Gaa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~ 203 (402)
T COG3598 157 PADVRNMDLTDVSGAADESDVLSPKLYRRFEKILEQKRPDFVVIDPF 203 (402)
T ss_pred hHhhhheeccccccCCCccccccHHHHHHHHHHHHHhCCCeEEEcch
Confidence 422111110 1233344444444 5568899975
No 425
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.11 E-value=0.021 Score=59.36 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=31.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHH
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQ 141 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 141 (814)
++++.+.|-||+||||+|.+.+-..++ .-..+.-++.....++.+++
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~---~G~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALAR---RGKRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHH---TTS-EEEEESSTTTHHHHHH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhh---CCCCeeEeecCCCccHHHHh
Confidence 378999999999999999988887743 22346666555544444443
No 426
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.11 E-value=0.069 Score=53.28 Aligned_cols=79 Identities=13% Similarity=0.054 Sum_probs=45.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCc--cCHHHHHHHHHHH--hCCCCCC--CCCCCHHHHHHHH
Q 003513 94 IIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKD--LQLEKIQETIGKK--IGLCNDS--WKNKSLEEKAHDI 167 (814)
Q Consensus 94 ~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~--l~~~~~~--~~~~~~~~~~~~l 167 (814)
+|+|.|..|+||||+|+.+.+.+ +..-..+..++...- .+....-..+..+ -+.+-+. ....+.+.+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l---~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF---AREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---HhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence 58999999999999999999887 222123444443221 1222222222222 2222222 3556777777777
Q ss_pred HHHhccCc
Q 003513 168 FKTLSKKK 175 (814)
Q Consensus 168 ~~~l~~~~ 175 (814)
+.+.+++.
T Consensus 78 ~~L~~g~~ 85 (277)
T cd02029 78 RTYGETGR 85 (277)
T ss_pred HHHHcCCC
Confidence 77776543
No 427
>PRK04040 adenylate kinase; Provisional
Probab=95.10 E-value=0.019 Score=55.07 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
..+|+|+|++|+||||+++.++...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999987
No 428
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.10 E-value=0.096 Score=48.84 Aligned_cols=115 Identities=19% Similarity=0.129 Sum_probs=61.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEE---EEEECCccCHHHHHHHHHH---HhCCCCCCCCCCC------
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVI---WVVVSKDLQLEKIQETIGK---KIGLCNDSWKNKS------ 159 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~---wv~~~~~~~~~~~~~~i~~---~l~~~~~~~~~~~------ 159 (814)
...|-|++..|.||||.|..++-+.. .+--.++ |+.......-...+..+.- +.+... .+...+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~---~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~-~~~~~~~~~~~~ 80 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL---GHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGF-TWETQNREADTA 80 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH---HCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCC-eecCCCcHHHHH
Confidence 35788888899999999999888872 2222343 3333322233333333200 001100 011111
Q ss_pred -HHHHHHHHHHHhccCc-eEEEEccccCc--------cccccccccCCCCcEEEEecCCcc
Q 003513 160 -LEEKAHDIFKTLSKKK-FALLLDDLWER--------VDLKKIGVPLPKNSAVVFTTRFVD 210 (814)
Q Consensus 160 -~~~~~~~l~~~l~~~~-~LlVlDdv~~~--------~~~~~~~~~~~~~~~iiiTtR~~~ 210 (814)
..+.....++.+...+ =|+|||.+-.. +++..+...-|++..||+|-|+..
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 1122233344444444 49999998532 344444455566899999999763
No 429
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.06 E-value=0.15 Score=52.63 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=37.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHH
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKK 147 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 147 (814)
-.++.|.|.+|+||||++.+++.... ..+-..++|++.... ..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEcccC--HHHHHHHHHHH
Confidence 46889999999999999999988762 222457889877653 45555555443
No 430
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.05 E-value=0.04 Score=52.80 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=34.0
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
..++|.+..+..+.-..... .-+.+.|++|+|||++|+.+..-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~---h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG---HHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC-----EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhcCcHHHHHHHHHHHcCC---CCeEEECCCCCCHHHHHHHHHHhC
Confidence 45899998888887666644 688999999999999999997654
No 431
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.04 E-value=0.081 Score=55.04 Aligned_cols=91 Identities=23% Similarity=0.284 Sum_probs=52.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEEC-CccCHHHHHHHHHHHhCCCC-----CCCCCCCHHH--
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVS-KDLQLEKIQETIGKKIGLCN-----DSWKNKSLEE-- 162 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~-- 162 (814)
.-..++|.|..|.|||||++.++... .. +..+..-+. +..++.++.......-++.. ...+......
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~---~~--~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGT---TA--DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC---CC--CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 34678999999999999999988765 22 223333333 34456666655555433211 0111111111
Q ss_pred ---HHHHHHHHh--ccCceEEEEccccCc
Q 003513 163 ---KAHDIFKTL--SKKKFALLLDDLWER 186 (814)
Q Consensus 163 ---~~~~l~~~l--~~~~~LlVlDdv~~~ 186 (814)
..-.+.+++ +++.+|+++||+...
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccchHH
Confidence 122234444 579999999998654
No 432
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.19 Score=49.80 Aligned_cols=49 Identities=31% Similarity=0.451 Sum_probs=37.7
Q ss_pred ccchhHHHHHHHHHHhc---------C---CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCC
Q 003513 72 VVGLQSQLEQVWRCLVQ---------E---PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDF 123 (814)
Q Consensus 72 ~vGr~~~~~~l~~~L~~---------~---~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f 123 (814)
+=|-+..+++|.+...- + ...+-|.++|.+|.|||-||++|++.- ...|
T Consensus 187 iGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT---SATF 247 (440)
T KOG0726|consen 187 IGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT---SATF 247 (440)
T ss_pred cccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc---chhh
Confidence 44678888888877531 1 245678899999999999999999987 4444
No 433
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.02 E-value=0.071 Score=57.86 Aligned_cols=92 Identities=21% Similarity=0.249 Sum_probs=55.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCC-----CCCCCCHHH---
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCND-----SWKNKSLEE--- 162 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~--- 162 (814)
.-..++|.|..|+|||||++.++... .. -..+++....+...+.++.+.+...-++... ..+......
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~---~~-d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGT---QC-DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CC-CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 44789999999999999999998765 21 1245555545555666666666544332110 001111111
Q ss_pred --HHHHHHHHh--ccCceEEEEccccCc
Q 003513 163 --KAHDIFKTL--SKKKFALLLDDLWER 186 (814)
Q Consensus 163 --~~~~l~~~l--~~~~~LlVlDdv~~~ 186 (814)
..-.+.+++ +++++|+++||+...
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 222344555 478999999998654
No 434
>PRK08149 ATP synthase SpaL; Validated
Probab=95.00 E-value=0.089 Score=56.79 Aligned_cols=91 Identities=14% Similarity=0.257 Sum_probs=53.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEEC-CccCHHHHHHHHHHHhCCCC-----CCCCCCCHH---
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVS-KDLQLEKIQETIGKKIGLCN-----DSWKNKSLE--- 161 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~--- 161 (814)
.-..++|+|..|+|||||+..++... .-+.++...+. +..++.++............ ...+.....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 34688999999999999999888754 12333333333 33456666666655432211 001111111
Q ss_pred --HHHHHHHHHh--ccCceEEEEccccCc
Q 003513 162 --EKAHDIFKTL--SKKKFALLLDDLWER 186 (814)
Q Consensus 162 --~~~~~l~~~l--~~~~~LlVlDdv~~~ 186 (814)
..+..+.+++ +++++||++||+...
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 1223344554 579999999998654
No 435
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.99 E-value=0.022 Score=54.20 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
...|.|+|++|+||||+|+.++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999987
No 436
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.98 E-value=0.55 Score=47.98 Aligned_cols=39 Identities=10% Similarity=0.039 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 78 QLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 78 ~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
.-+++...+..+.-.....++|+.|+||+++|..++...
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~l 43 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLI 43 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHH
Confidence 456667777766445677799999999999999998876
No 437
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.95 E-value=0.14 Score=55.39 Aligned_cols=60 Identities=25% Similarity=0.331 Sum_probs=36.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECC-ccCHHHHHHHHHHHhCCCC
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSK-DLQLEKIQETIGKKIGLCN 152 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~ 152 (814)
-.+++++|+.|+||||++..++.... .......+..+.... .....+-+...++.++++.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~-~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~ 251 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAV-IRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSV 251 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCce
Confidence 46999999999999999998887541 122223344443322 1123333556666666554
No 438
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.94 E-value=0.14 Score=55.75 Aligned_cols=94 Identities=18% Similarity=0.310 Sum_probs=57.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCc-cCHHHHHHHHHHHhCCCC-----CCCCCCCHHH--
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKD-LQLEKIQETIGKKIGLCN-----DSWKNKSLEE-- 162 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~-- 162 (814)
.-..++|.|.+|+|||||+.+++..... ++-+.++++-+... ..+.++.+.+...-.... ...+......
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~--~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAK--EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh--cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3467899999999999999998777621 22245666666543 356666666665422211 0011111111
Q ss_pred ---HHHHHHHHh---ccCceEEEEccccCc
Q 003513 163 ---KAHDIFKTL---SKKKFALLLDDLWER 186 (814)
Q Consensus 163 ---~~~~l~~~l---~~~~~LlVlDdv~~~ 186 (814)
.+-.+.+++ +++++|+++|++...
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 223355665 678999999999654
No 439
>PRK05922 type III secretion system ATPase; Validated
Probab=94.93 E-value=0.059 Score=58.14 Aligned_cols=91 Identities=14% Similarity=0.227 Sum_probs=51.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEEC-CccCHHHHHHHHHHHhCCCCC-----CCCCCCHH---
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVS-KDLQLEKIQETIGKKIGLCND-----SWKNKSLE--- 161 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~--- 161 (814)
.-..++|.|..|+|||||++.++... . . +..+++.+. ....+...+.+.......... ..+.....
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~---~-~-d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS---K-S-TINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC---C-C-CceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 34578999999999999999998765 2 2 222332232 233444555554433322110 00111111
Q ss_pred --HHHHHHHHHh--ccCceEEEEccccCc
Q 003513 162 --EKAHDIFKTL--SKKKFALLLDDLWER 186 (814)
Q Consensus 162 --~~~~~l~~~l--~~~~~LlVlDdv~~~ 186 (814)
..+-.+.+++ +++++|+++||+...
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 1223345555 579999999999654
No 440
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.88 E-value=0.035 Score=53.33 Aligned_cols=36 Identities=33% Similarity=0.480 Sum_probs=30.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEE
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVV 130 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~ 130 (814)
.+++.|+|+.|+|||||+..+.... ...|..+++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeec
Confidence 4789999999999999999999988 67776555554
No 441
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.87 E-value=0.067 Score=58.32 Aligned_cols=94 Identities=18% Similarity=0.251 Sum_probs=58.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCc-cCHHHHHHHHHHHhCCCC-----CCCCCCCHH---
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKD-LQLEKIQETIGKKIGLCN-----DSWKNKSLE--- 161 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-----~~~~~~~~~--- 161 (814)
.-..++|.|.+|+|||||+.+++.... +.+-+.++++-+... ..+.++...+...-.+.. ...+.....
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~--~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS--KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 346789999999999999999988872 224567777766543 355666666654322211 000111111
Q ss_pred --HHHHHHHHHh---ccCceEEEEccccCc
Q 003513 162 --EKAHDIFKTL---SKKKFALLLDDLWER 186 (814)
Q Consensus 162 --~~~~~l~~~l---~~~~~LlVlDdv~~~ 186 (814)
..+-.+.+++ +++++|+++||+...
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 1223355555 378999999999654
No 442
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.85 E-value=0.18 Score=58.60 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
.-..|+|+|..|+|||||++.+..-.
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987765
No 443
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.85 E-value=0.019 Score=55.14 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 003513 94 IIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 94 ~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
+|.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999876
No 444
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.84 E-value=0.05 Score=58.26 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 93 GIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 93 ~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
..++|+|+.|.||||||+.+.--.
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHccc
Confidence 689999999999999999987654
No 445
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=94.83 E-value=0.093 Score=50.21 Aligned_cols=118 Identities=19% Similarity=0.166 Sum_probs=65.0
Q ss_pred HHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCC--eEEEEEECCccC---HHHHHHHHHHHhCCCCCCCC
Q 003513 82 VWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFD--YVIWVVVSKDLQ---LEKIQETIGKKIGLCNDSWK 156 (814)
Q Consensus 82 l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~--~~~wv~~~~~~~---~~~~~~~i~~~l~~~~~~~~ 156 (814)
++..|.+. +..-..|.|++|+|||||.+.++.-.+.....|- .++-++-+.... ...-+..++.+..+.
T Consensus 128 li~~ly~~-g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVl----- 201 (308)
T COG3854 128 LIKDLYQN-GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVL----- 201 (308)
T ss_pred HHHHHHhc-CceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhc-----
Confidence 44445444 4445779999999999999999888744334453 344444322110 000112222222211
Q ss_pred CCCHHHHHHHHHHHhc-cCceEEEEccccCccccccccccCCCCcEEEEecC
Q 003513 157 NKSLEEKAHDIFKTLS-KKKFALLLDDLWERVDLKKIGVPLPKNSAVVFTTR 207 (814)
Q Consensus 157 ~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~~~~~~~~~~~~~~~iiiTtR 207 (814)
+..-...-+....+ --+=++|+|.+-...+-.++...+..|.++|.|.-
T Consensus 202 --d~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~~~GVkli~TaH 251 (308)
T COG3854 202 --DPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTALHAGVKLITTAH 251 (308)
T ss_pred --ccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHHhcCcEEEEeec
Confidence 11111122222232 35779999999887776666555566888887765
No 446
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.83 E-value=0.27 Score=50.96 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 93 GIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 93 ~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
+-|.++|++|.|||-||++||.+.
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhh
Confidence 468899999999999999999997
No 447
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.83 E-value=0.086 Score=60.13 Aligned_cols=114 Identities=19% Similarity=0.291 Sum_probs=59.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhC---CCCCCCCCCCHHHHHHHHH
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIG---LCNDSWKNKSLEEKAHDIF 168 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~---~~~~~~~~~~~~~~~~~l~ 168 (814)
.++..|.|.+|.||||+++.+.....+....-...+.+..........+.+.+...+. ...+ ........+..|+
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~--~~~~~~~~a~TiH 244 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDE--QKKRIPEEASTLH 244 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchh--hhhcCCCchHHHH
Confidence 3689999999999999999888776222111123455544443334444444443221 1100 0000001123334
Q ss_pred HHhcc------------Cc---eEEEEccccCc--cccccccccCCCCcEEEEecC
Q 003513 169 KTLSK------------KK---FALLLDDLWER--VDLKKIGVPLPKNSAVVFTTR 207 (814)
Q Consensus 169 ~~l~~------------~~---~LlVlDdv~~~--~~~~~~~~~~~~~~~iiiTtR 207 (814)
+.|.- .+ -++|+|.+.-. ..+..+...+++++++|+--=
T Consensus 245 rlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~~~~rlIlvGD 300 (615)
T PRK10875 245 RLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALPPHARVIFLGD 300 (615)
T ss_pred HHhCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcccCCEEEEecc
Confidence 44321 11 28999997533 334444455667888876543
No 448
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=94.82 E-value=0.41 Score=48.06 Aligned_cols=170 Identities=16% Similarity=0.201 Sum_probs=91.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCcc----CHHHHHHHHHHHhCCCC---------------
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDL----QLEKIQETIGKKIGLCN--------------- 152 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~----~~~~~~~~i~~~l~~~~--------------- 152 (814)
.-+.+|+|+.|.|||.|.+.+.... .+..--+.|+||+-.... .....-.++.+.=-...
T Consensus 87 P~I~~VYGPTG~GKSqLlRNLis~~-lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t~~P~ 165 (369)
T PF02456_consen 87 PFIGVVYGPTGSGKSQLLRNLISCQ-LIQPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTGTFRPK 165 (369)
T ss_pred ceEEEEECCCCCCHHHHHHHhhhcC-cccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeecccccccccc
Confidence 3467799999999999999998775 567778899999754332 12222333333211100
Q ss_pred ---------CCCCCCCHHHHHHHHHHHhccCceEEEEccccCc----cccccccccC--------C--CCcEEEEecCCc
Q 003513 153 ---------DSWKNKSLEEKAHDIFKTLSKKKFALLLDDLWER----VDLKKIGVPL--------P--KNSAVVFTTRFV 209 (814)
Q Consensus 153 ---------~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----~~~~~~~~~~--------~--~~~~iiiTtR~~ 209 (814)
.....-+++.-...+.+.-+..++-||+|..-+. ..+..+...+ + .|-.|+|.--+.
T Consensus 166 Fv~msy~e~t~~~NldI~~p~NiF~~Aa~~GPiaIImDECMe~Lg~~~~is~fFHAlPSKL~~rfp~CTgy~VfVVLHNm 245 (369)
T PF02456_consen 166 FVEMSYDEATSPENLDITNPNNIFAQAAKKGPIAIIMDECMEKLGSHKSISKFFHALPSKLHDRFPKCTGYYVFVVLHNM 245 (369)
T ss_pred ceeecHhhhCCccccCCCCchHHHHHHHhcCCEEEEhHHHHHHhcCCCChhHHHhcCcHHHhhhccCCceeEEEEEeccC
Confidence 0011223333445567777889999999997432 2333332332 2 255555544433
Q ss_pred cccccCCccceEEeccCCHHhHHHHHHHHhccccccCCCChHHHHHHHHHHcCCChHHHHHHHHHh
Q 003513 210 DVCGGMEARRMFKVACLSDEDAWELFREKVGEETIESHHSLPELAQTVAKECRGLPLALITIGRAM 275 (814)
Q Consensus 210 ~~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 275 (814)
......+ ..+-.|+ -.|.--...+.-.--.+.+=|-.+.+|+|.||..+-..+
T Consensus 246 nPR~d~g-GNI~~LK------------iqAK~HIiSp~~~p~QlsRFin~yt~glp~~i~~LLKdi 298 (369)
T PF02456_consen 246 NPRRDIG-GNIANLK------------IQAKCHIISPKMHPSQLSRFINNYTKGLPTAISLLLKDI 298 (369)
T ss_pred CcccccC-CCccchh------------hhceeeeecCCCCHHHHHHHHHHhccCCChhHHHHHHHH
Confidence 2221111 1111110 001000012222335677788889999999997766433
No 449
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.81 E-value=0.1 Score=49.50 Aligned_cols=115 Identities=20% Similarity=0.122 Sum_probs=62.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECC---ccCHHHHHHHHH--HH--hCCCCCCCCCCCHH---
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSK---DLQLEKIQETIG--KK--IGLCNDSWKNKSLE--- 161 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~--~~--l~~~~~~~~~~~~~--- 161 (814)
...|-|+|..|-||||.|..++-+. ..+--.|..+..-+ ...-...+..+. .- .+.. -.+...+.+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra---~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~-~~~~~~~~~e~~ 97 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRA---VGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTG-FTWETQDRERDI 97 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHH---HHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCC-CcccCCCcHHHH
Confidence 4689999999999999999988887 23333444444322 223333333321 00 0110 001111111
Q ss_pred ----HHHHHHHHHhcc-CceEEEEccccCc--------cccccccccCCCCcEEEEecCCcc
Q 003513 162 ----EKAHDIFKTLSK-KKFALLLDDLWER--------VDLKKIGVPLPKNSAVVFTTRFVD 210 (814)
Q Consensus 162 ----~~~~~l~~~l~~-~~~LlVlDdv~~~--------~~~~~~~~~~~~~~~iiiTtR~~~ 210 (814)
+.....++.+.. +-=|||||.+-.. +++.++...-|.+..||+|-|+..
T Consensus 98 ~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 98 AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 122333444444 4459999998532 334444444566889999999653
No 450
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.80 E-value=0.11 Score=56.99 Aligned_cols=60 Identities=22% Similarity=0.266 Sum_probs=37.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCc-cCHHHHHHHHHHHhCCCC
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKD-LQLEKIQETIGKKIGLCN 152 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~ 152 (814)
..+++++|+.|+||||.+..++... ........+..++.... ....+-++..++..++..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~-~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv 316 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC-VMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPV 316 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH-HHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCe
Confidence 4699999999999999999999876 21222224555554321 223344555566666543
No 451
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.80 E-value=0.1 Score=51.49 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 003513 94 IIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 94 ~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
.|.|+|++|+||||+|+.++..+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999876
No 452
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.79 E-value=0.046 Score=56.55 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=41.7
Q ss_pred CcccchhHHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 70 PTVVGLQSQLEQVWRCLVQ-----EPAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~-----~~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
..|+|.++.++++++.+.. +..-+++.+.|+.|.||||||..+-+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4799999999999999864 2467899999999999999999998887
No 453
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.79 E-value=0.073 Score=55.05 Aligned_cols=61 Identities=15% Similarity=0.210 Sum_probs=41.9
Q ss_pred CCcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHH
Q 003513 69 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLE 138 (814)
Q Consensus 69 ~~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 138 (814)
.+.++=..+....+...+..+ +.|.|.|++|+||||+|+.++... ... .+.|.++...+..
T Consensus 44 d~~y~f~~~~~~~vl~~l~~~---~~ilL~G~pGtGKTtla~~lA~~l---~~~---~~rV~~~~~l~~~ 104 (327)
T TIGR01650 44 DPAYLFDKATTKAICAGFAYD---RRVMVQGYHGTGKSTHIEQIAARL---NWP---CVRVNLDSHVSRI 104 (327)
T ss_pred CCCccCCHHHHHHHHHHHhcC---CcEEEEeCCCChHHHHHHHHHHHH---CCC---eEEEEecCCCChh
Confidence 344555555666777777655 569999999999999999999988 322 2345555544443
No 454
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.77 E-value=0.28 Score=51.93 Aligned_cols=102 Identities=17% Similarity=0.168 Sum_probs=57.0
Q ss_pred HHHHHHHHHhc-C-------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEEC-CccCHHHHHHHHHHHh
Q 003513 78 QLEQVWRCLVQ-E-------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVS-KDLQLEKIQETIGKKI 148 (814)
Q Consensus 78 ~~~~l~~~L~~-~-------~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l 148 (814)
..++|++.|.. + +...+|-++|.-|.||||-|-.+++.+. .+-..+.-|.+. ..+..-+-++.++++.
T Consensus 78 V~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lk---k~~~kvllVaaD~~RpAA~eQL~~La~q~ 154 (451)
T COG0541 78 VYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLK---KKGKKVLLVAADTYRPAAIEQLKQLAEQV 154 (451)
T ss_pred HHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHH---HcCCceEEEecccCChHHHHHHHHHHHHc
Confidence 34556666652 1 2467999999999999999999999982 222223333221 1223345577888888
Q ss_pred CCCCCCC-CCCCHHHHHHHHHHHhccCc-eEEEEcc
Q 003513 149 GLCNDSW-KNKSLEEKAHDIFKTLSKKK-FALLLDD 182 (814)
Q Consensus 149 ~~~~~~~-~~~~~~~~~~~l~~~l~~~~-~LlVlDd 182 (814)
+++.-.. ...++.+.+..-.+..+... =++|+|=
T Consensus 155 ~v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDT 190 (451)
T COG0541 155 GVPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDT 190 (451)
T ss_pred CCceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 7754221 23344444444333333332 2444444
No 455
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.77 E-value=0.05 Score=48.17 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
.+-|.|+|-+|+||||+|.+++...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 4568899999999999999999665
No 456
>PRK13947 shikimate kinase; Provisional
Probab=94.76 E-value=0.027 Score=53.42 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 003513 94 IIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 94 ~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
.|.|+|++|+||||+|+.+++..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 457
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.76 E-value=0.08 Score=59.15 Aligned_cols=132 Identities=17% Similarity=0.190 Sum_probs=73.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCC-----CCCeEEEEEECC-----c----------c-C-HHHHHHHHHHHhC
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPK-----DFDYVIWVVVSK-----D----------L-Q-LEKIQETIGKKIG 149 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~-----~f~~~~wv~~~~-----~----------~-~-~~~~~~~i~~~l~ 149 (814)
-..|+|+|+.|+|||||.+.+........+ ..-.+.|++-.. . . + .+.-.+..+.+++
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 367999999999999999999776521111 111223332111 0 0 1 1455566666666
Q ss_pred CCCCCC----C-CCCHHHHHHHHHHHhccCceEEEEccccCccccccc---cccCCC-CcEEEEecCCccccccCCccce
Q 003513 150 LCNDSW----K-NKSLEEKAHDIFKTLSKKKFALLLDDLWERVDLKKI---GVPLPK-NSAVVFTTRFVDVCGGMEARRM 220 (814)
Q Consensus 150 ~~~~~~----~-~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~---~~~~~~-~~~iiiTtR~~~~~~~~~~~~~ 220 (814)
...+.. . -..-+...-.+...+-.++-+||||.-.|.-|++.+ ...+.. .+.||+.|-++....... ...
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va-~~i 506 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVA-TRI 506 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhc-ceE
Confidence 654321 0 111222233345556678999999998776444332 111222 566788888877765543 444
Q ss_pred EEec
Q 003513 221 FKVA 224 (814)
Q Consensus 221 ~~l~ 224 (814)
+.++
T Consensus 507 ~~~~ 510 (530)
T COG0488 507 WLVE 510 (530)
T ss_pred EEEc
Confidence 5554
No 458
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.75 E-value=0.03 Score=53.33 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 93 GIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 93 ~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998876
No 459
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.74 E-value=0.1 Score=56.35 Aligned_cols=91 Identities=22% Similarity=0.272 Sum_probs=51.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEEC-CccCHHHHHHHHHHHhCCCC-----CCCCCCCHHHH-
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVS-KDLQLEKIQETIGKKIGLCN-----DSWKNKSLEEK- 163 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~- 163 (814)
.-..++|.|..|+|||||++.++... . .+..++..+. +...+.+...+....-.... ...+....+..
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~---~--~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~ 228 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP---D--ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVR 228 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC---C--CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHH
Confidence 44689999999999999999888765 2 2334444443 34445555555432211100 00111112211
Q ss_pred ----HHHHHHHh--ccCceEEEEccccCc
Q 003513 164 ----AHDIFKTL--SKKKFALLLDDLWER 186 (814)
Q Consensus 164 ----~~~l~~~l--~~~~~LlVlDdv~~~ 186 (814)
+-.+.+++ +++++|+++||+...
T Consensus 229 a~~~a~tiAEyfrd~G~~VLl~~Dsltr~ 257 (433)
T PRK07594 229 ALFVATTIAEFFRDNGKRVVLLADSLTRY 257 (433)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCHHHH
Confidence 22345555 578999999999654
No 460
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.73 E-value=0.095 Score=46.81 Aligned_cols=104 Identities=16% Similarity=0.315 Sum_probs=60.1
Q ss_pred CCCCCCcccEEEcccCCCccccchhhccCCcccEEEccCCccccccC-cccccccccCEEEecCCCCcccCh-hhhcCCC
Q 003513 444 TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNIMLRQLP-MGISKLVSLQLLDISNTSVTELPE-DLKALVN 521 (814)
Q Consensus 444 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~ 521 (814)
.+.++++|+.+.+.. .+..+....|.++++|+.+.+..+ +..++ ..+..+.+|+.+.+.. .+..++. .+..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 366788888888875 467777777888888998888775 44443 3466777888888866 5555543 3456888
Q ss_pred CceeccccccccceeCccccCCCcccceeeccc
Q 003513 522 LKCLNLVWAKELVVVPQQLLSNFSRLRVLRMFA 554 (814)
Q Consensus 522 L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~ 554 (814)
|+.+++..+ +..++...+.++ +|+.+.+..
T Consensus 83 l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 888888653 466776667776 888887664
No 461
>PLN02348 phosphoribulokinase
Probab=94.72 E-value=0.22 Score=52.81 Aligned_cols=38 Identities=26% Similarity=0.454 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 79 LEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 79 ~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
...+.......+...+|+|.|.+|+||||+|+.+.+.+
T Consensus 36 ~~~~~~~~~~~~~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 36 ASSVVVALAADDGTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred hHHHHHhhccCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444444444467899999999999999999999987
No 462
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.70 E-value=0.2 Score=50.62 Aligned_cols=51 Identities=16% Similarity=0.207 Sum_probs=36.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHH
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGK 146 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 146 (814)
-.++.|.|.+|+|||++|.+++.... ..+-..++|++... +..++...+..
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~--~~~g~~vly~s~E~--~~~~~~~r~~~ 63 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIA--KKQGKPVLFFSLEM--SKEQLLQRLLA 63 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCceEEEeCCC--CHHHHHHHHHH
Confidence 36899999999999999999888763 22234678877655 45566665543
No 463
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.70 E-value=0.023 Score=54.20 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 003513 94 IIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 94 ~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
+|+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999886
No 464
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.68 E-value=0.044 Score=53.33 Aligned_cols=26 Identities=19% Similarity=0.431 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
...+|+|+|++|+||||||+.+....
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 55799999999999999999999876
No 465
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.68 E-value=0.2 Score=56.73 Aligned_cols=88 Identities=17% Similarity=0.195 Sum_probs=56.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCC-------------CCCC
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCND-------------SWKN 157 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------------~~~~ 157 (814)
.-.++.|.|.+|+|||++|.+++... ...-+.++|++.... .+++.+.+ +.++...+ ....
T Consensus 272 ~g~~~li~G~~G~GKT~l~~~~~~~~---~~~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 345 (509)
T PRK09302 272 RGSIILVSGATGTGKTLLASKFAEAA---CRRGERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPES 345 (509)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhCCCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCccc
Confidence 45688899999999999999998876 234467888877654 45554443 34443211 0112
Q ss_pred CCHHHHHHHHHHHhcc-CceEEEEcccc
Q 003513 158 KSLEEKAHDIFKTLSK-KKFALLLDDLW 184 (814)
Q Consensus 158 ~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 184 (814)
...++....+.+.++. +.-++|+|.+.
T Consensus 346 ~~~~~~~~~i~~~i~~~~~~~vVIDslt 373 (509)
T PRK09302 346 YGLEDHLIIIKREIEEFKPSRVAIDPLS 373 (509)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 2345556666666644 45588999874
No 466
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.66 E-value=0.16 Score=57.49 Aligned_cols=96 Identities=18% Similarity=0.112 Sum_probs=59.1
Q ss_pred HHhcC-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCC---------
Q 003513 85 CLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDS--------- 154 (814)
Q Consensus 85 ~L~~~-~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--------- 154 (814)
.|..+ +.-+++.|.|.+|+|||+||.+++.... ...-+.++|++.... .+++.+.+.. ++.....
T Consensus 23 ~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~--~~~ge~~lyis~ee~--~~~i~~~~~~-~g~d~~~~~~~g~l~~ 97 (509)
T PRK09302 23 ITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGI--KRFDEPGVFVTFEES--PEDIIRNVAS-FGWDLQKLIDEGKLFI 97 (509)
T ss_pred hhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH--HhcCCCEEEEEccCC--HHHHHHHHHH-cCCCHHHHhhCCeEEE
Confidence 34433 3458999999999999999999887652 222467889887664 4555554432 3322100
Q ss_pred ------------CCCCCHHHHHHHHHHHhcc-CceEEEEccccC
Q 003513 155 ------------WKNKSLEEKAHDIFKTLSK-KKFALLLDDLWE 185 (814)
Q Consensus 155 ------------~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~ 185 (814)
....+.+.....+.+.++. +.-.+|+|.+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~ 141 (509)
T PRK09302 98 LDASPDPSEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEA 141 (509)
T ss_pred EecCcccccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHH
Confidence 0112345555666666543 556799999864
No 467
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.64 E-value=0.018 Score=33.24 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=15.2
Q ss_pred ccCEEEecCCCCcccChhhhc
Q 003513 498 SLQLLDISNTSVTELPEDLKA 518 (814)
Q Consensus 498 ~L~~L~l~~~~l~~lp~~i~~ 518 (814)
+|++|++++|+++++|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 477788888877777776554
No 468
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.61 E-value=0.024 Score=55.32 Aligned_cols=23 Identities=43% Similarity=0.680 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 003513 94 IIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 94 ~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
+|+|.|+.|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 469
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.59 E-value=0.025 Score=52.31 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 003513 94 IIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 94 ~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
++.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998875
No 470
>COG4240 Predicted kinase [General function prediction only]
Probab=94.58 E-value=0.19 Score=48.00 Aligned_cols=85 Identities=11% Similarity=0.006 Sum_probs=50.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCC---CCCCCCCCCHHHHHHH
Q 003513 90 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGL---CNDSWKNKSLEEKAHD 166 (814)
Q Consensus 90 ~~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~---~~~~~~~~~~~~~~~~ 166 (814)
++.-+++|.|+.|+||||++..++..... +.. +.+...+..+-.-...-+-.++++... ...-....+..-....
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~-kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAA-KGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHH-hcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 46779999999999999999999998832 222 466666554433333333344444210 0001123455666666
Q ss_pred HHHHhccCce
Q 003513 167 IFKTLSKKKF 176 (814)
Q Consensus 167 l~~~l~~~~~ 176 (814)
+....+++.-
T Consensus 126 Lnai~~g~~~ 135 (300)
T COG4240 126 LNAIARGGPT 135 (300)
T ss_pred HHHHhcCCCC
Confidence 6666666643
No 471
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.58 E-value=0.015 Score=68.28 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNK 115 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~ 115 (814)
+.++++|+|+.|.||||+.+.+.-.
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHH
Confidence 3479999999999999999988765
No 472
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.58 E-value=0.35 Score=60.56 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
.+-|.++|++|.|||.||+++|.+.
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhc
Confidence 4578899999999999999999986
No 473
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.58 E-value=0.07 Score=57.36 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 78 QLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 78 ~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
..+.+++.+... ....+.|.|.||.|||+|.+++.+..
T Consensus 9 ~~~~v~~~~~~~-~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 9 VFDTVIEAIENE-EGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHcc-CCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 445555555544 55788999999999999999999988
No 474
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.57 E-value=0.071 Score=49.70 Aligned_cols=111 Identities=23% Similarity=0.266 Sum_probs=60.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCcc--CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDL--QLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFK 169 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 169 (814)
-.+++|+|..|.|||||++.++... ....+.+++...... ....... .++... .-..-+...-.+..
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~~~~~~~~----~i~~~~---qlS~G~~~r~~l~~ 93 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKLPLEELRR----RIGYVP---QLSGGQRQRVALAR 93 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccCCHHHHHh----ceEEEe---eCCHHHHHHHHHHH
Confidence 3789999999999999999998876 233455555432111 1112211 111100 01122333334556
Q ss_pred HhccCceEEEEccccCccc------cccccccC-CCCcEEEEecCCccccc
Q 003513 170 TLSKKKFALLLDDLWERVD------LKKIGVPL-PKNSAVVFTTRFVDVCG 213 (814)
Q Consensus 170 ~l~~~~~LlVlDdv~~~~~------~~~~~~~~-~~~~~iiiTtR~~~~~~ 213 (814)
.+...+-++++|+....-| +..+...+ ..+..++++|.+.....
T Consensus 94 ~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 94 ALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 6666788999999864422 21211111 12467888887665543
No 475
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.56 E-value=0.18 Score=50.11 Aligned_cols=119 Identities=17% Similarity=0.222 Sum_probs=67.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCC----------CC---CeEEEEEECC----cc--CH----------------
Q 003513 93 GIIGLYGMGGVGKTTLLTQINNKFVDNPK----------DF---DYVIWVVVSK----DL--QL---------------- 137 (814)
Q Consensus 93 ~~i~i~G~gGiGKTtLa~~~~~~~~~~~~----------~f---~~~~wv~~~~----~~--~~---------------- 137 (814)
.+++|+|+.|.|||||.+.+.--.....+ .. ..+.||.=.. .+ ++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 79999999999999999999874410000 01 2455553111 00 11
Q ss_pred ------HHHHHHHHHHhCCCC---CCCCC-CCHHHHHHHHHHHhccCceEEEEccccCc------cccccccccCCC-Cc
Q 003513 138 ------EKIQETIGKKIGLCN---DSWKN-KSLEEKAHDIFKTLSKKKFALLLDDLWER------VDLKKIGVPLPK-NS 200 (814)
Q Consensus 138 ------~~~~~~i~~~l~~~~---~~~~~-~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------~~~~~~~~~~~~-~~ 200 (814)
.+...+.+++.++.. ..... ..-+...-.|.+.|.+++=|++||.--.. ..+..+...+.. |.
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~ 190 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 234445555555432 11122 22333445567788999999999985432 222223222222 88
Q ss_pred EEEEecCCccc
Q 003513 201 AVVFTTRFVDV 211 (814)
Q Consensus 201 ~iiiTtR~~~~ 211 (814)
-|+++|-+-..
T Consensus 191 tIl~vtHDL~~ 201 (254)
T COG1121 191 TVLMVTHDLGL 201 (254)
T ss_pred EEEEEeCCcHH
Confidence 89999987654
No 476
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.54 E-value=0.03 Score=50.74 Aligned_cols=23 Identities=48% Similarity=0.761 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 003513 94 IIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 94 ~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
.|+|+|+.|+|||||++.++...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999876
No 477
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.54 E-value=0.031 Score=53.52 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 93 GIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 93 ~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
.+++|+|+.|+||||+++.++...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998876
No 478
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.52 E-value=0.05 Score=49.90 Aligned_cols=26 Identities=27% Similarity=0.574 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
...+|.++|.+|.||||+|.+++...
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 55799999999999999999999998
No 479
>PHA02244 ATPase-like protein
Probab=94.50 E-value=0.081 Score=55.43 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=31.4
Q ss_pred CCcccchhHHHH----HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 69 EPTVVGLQSQLE----QVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 69 ~~~~vGr~~~~~----~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
+..++|....+. .+..++..+ .-|.|+|++|+|||+||+++++..
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~~---~PVLL~GppGtGKTtLA~aLA~~l 143 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNAN---IPVFLKGGAGSGKNHIAEQIAEAL 143 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhcC---CCEEEECCCCCCHHHHHHHHHHHh
Confidence 344677655443 344444333 357789999999999999999986
No 480
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.089 Score=52.67 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
....++|||++|.|||-+|+.|+...
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~m 190 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATM 190 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhc
Confidence 35689999999999999999999988
No 481
>PRK13949 shikimate kinase; Provisional
Probab=94.48 E-value=0.037 Score=52.19 Aligned_cols=24 Identities=38% Similarity=0.414 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 93 GIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 93 ~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
+.|.|+|+.|+||||+++.++...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999999999987
No 482
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.48 E-value=0.057 Score=56.77 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=38.3
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
..+||.++.+..+.-.+.+. +..-+.|.|..|+|||||++.+..-.
T Consensus 4 ~~ivgq~~~~~al~~~~~~~-~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDP-KIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcCC-CCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 35799999998887777664 45667899999999999999998765
No 483
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.47 E-value=0.031 Score=52.48 Aligned_cols=22 Identities=45% Similarity=0.623 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 003513 95 IGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 95 i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
|.|+|..|+|||||++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999887
No 484
>PRK13768 GTPase; Provisional
Probab=94.46 E-value=0.051 Score=55.08 Aligned_cols=37 Identities=27% Similarity=0.239 Sum_probs=27.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEE
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVV 131 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 131 (814)
..+++|.|+||+||||++..++.... ..-..++.++.
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~---~~g~~v~~i~~ 38 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLE---EQGYDVAIVNL 38 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHH---hcCCceEEEEC
Confidence 36899999999999999999988872 22234555543
No 485
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.45 E-value=0.15 Score=58.92 Aligned_cols=88 Identities=20% Similarity=0.303 Sum_probs=50.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCc-cCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKD-LQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKT 170 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 170 (814)
..+++++|+.|+||||.+..++..+. .......+..++.... ....+-++..++.++++.. ...+..+....+ +.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~-~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~--~~~~~~~l~~al-~~ 260 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV-AREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH--AVKDAADLRFAL-AA 260 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH-HHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc--ccCCHHHHHHHH-HH
Confidence 46999999999999999998887661 1122234555543321 1234556666677766442 223444443333 23
Q ss_pred hccCceEEEEcccc
Q 003513 171 LSKKKFALLLDDLW 184 (814)
Q Consensus 171 l~~~~~LlVlDdv~ 184 (814)
++++. ++++|=.-
T Consensus 261 ~~~~D-~VLIDTAG 273 (767)
T PRK14723 261 LGDKH-LVLIDTVG 273 (767)
T ss_pred hcCCC-EEEEeCCC
Confidence 34433 66666653
No 486
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=94.43 E-value=0.15 Score=61.17 Aligned_cols=195 Identities=16% Similarity=0.092 Sum_probs=98.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCC-CCCeEEEEEECC----ccCHH--HHHHHHHHHhCCCCCCCCCCCHHHHH
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPK-DFDYVIWVVVSK----DLQLE--KIQETIGKKIGLCNDSWKNKSLEEKA 164 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~-~f~~~~wv~~~~----~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~ 164 (814)
..-+.|+|.+|.||||+.+.++-....... .=+..+++.+.. ..... .+..-+...+... ....+..
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~------~~~~~~~ 295 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQ------GIAKQLI 295 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhcc------CCcchhh
Confidence 457899999999999999998877632221 112334443321 00111 2222222222211 1122222
Q ss_pred HHHHHHhccCceEEEEccccCcc------cccccc--ccCCCCcEEEEecCCccccccCCccceEEeccCCHHhHHHHHH
Q 003513 165 HDIFKTLSKKKFALLLDDLWERV------DLKKIG--VPLPKNSAVVFTTRFVDVCGGMEARRMFKVACLSDEDAWELFR 236 (814)
Q Consensus 165 ~~l~~~l~~~~~LlVlDdv~~~~------~~~~~~--~~~~~~~~iiiTtR~~~~~~~~~~~~~~~l~~L~~~ea~~l~~ 236 (814)
....++++..++++++|.++... ....+. .+--+...+|+|+|....-.........++..+.++.-.+...
T Consensus 296 ~~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~ 375 (824)
T COG5635 296 EAHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFIL 375 (824)
T ss_pred HHHHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHH
Confidence 23367888999999999987642 111111 1111289999999865543333334456666666655444333
Q ss_pred HHhc-----ccc-ccCCC--Ch----HHHHHHHHHHcCCChHHHHHHHHHhccC-----CCHHHHHHHHHHHh
Q 003513 237 EKVG-----EET-IESHH--SL----PELAQTVAKECRGLPLALITIGRAMAYK-----KTPEEWRYAIEVLR 292 (814)
Q Consensus 237 ~~~~-----~~~-~~~~~--~~----~~~~~~i~~~~~g~Plal~~~~~~l~~~-----~~~~~w~~~l~~l~ 292 (814)
.... ... ....+ .+ .--..+-++.....|+.+...+...... ...+.++.+++.+-
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~ 448 (824)
T COG5635 376 YQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALL 448 (824)
T ss_pred HHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHH
Confidence 1111 000 01111 00 0011233344488899998888444311 34555666555443
No 487
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=94.43 E-value=0.14 Score=55.90 Aligned_cols=92 Identities=20% Similarity=0.200 Sum_probs=51.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCC-----CCCCCCCHH----
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCN-----DSWKNKSLE---- 161 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~---- 161 (814)
.-..++|.|..|+|||||++.+.... .. ...++++...+..++.++.......-+... ...+.....
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~~---~~-~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~ 232 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARNT---SA-DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKG 232 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccc---CC-CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHH
Confidence 45789999999999999999888765 22 234555544444445554333222111100 000111111
Q ss_pred -HHHHHHHHHh--ccCceEEEEccccCc
Q 003513 162 -EKAHDIFKTL--SKKKFALLLDDLWER 186 (814)
Q Consensus 162 -~~~~~l~~~l--~~~~~LlVlDdv~~~ 186 (814)
..+-.+.+++ +++++|+++||+...
T Consensus 233 ~~~a~~iAEyfr~~g~~Vll~~Dsltr~ 260 (438)
T PRK07721 233 AYTATAIAEYFRDQGLNVMLMMDSVTRV 260 (438)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeChHHH
Confidence 1222344555 579999999998543
No 488
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.42 E-value=0.12 Score=56.07 Aligned_cols=94 Identities=17% Similarity=0.302 Sum_probs=57.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCc-cCHHHHHHHHHHHhCCCC-----CCCCCCCHHH--
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKD-LQLEKIQETIGKKIGLCN-----DSWKNKSLEE-- 162 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~-- 162 (814)
.-..++|.|.+|+|||||+.+++.... .++-..++++-+... ..+.++.+.+...-.... ...+......
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~--~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHH--hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 346789999999999999999887762 122346677766543 456677776654322211 0111111121
Q ss_pred ---HHHHHHHHh---ccCceEEEEccccCc
Q 003513 163 ---KAHDIFKTL---SKKKFALLLDDLWER 186 (814)
Q Consensus 163 ---~~~~l~~~l---~~~~~LlVlDdv~~~ 186 (814)
.+-.+.+++ +++++|+++||+...
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 223355665 468999999999654
No 489
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.36 E-value=0.06 Score=56.45 Aligned_cols=46 Identities=17% Similarity=0.321 Sum_probs=37.2
Q ss_pred CcccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 70 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 70 ~~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
..++|.++.++.+.-.+.+. +...+.+.|..|+||||+|+.+..-.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~-~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDP-GIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhcc-CCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 45899999999887655433 34568999999999999999998775
No 490
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=94.35 E-value=0.13 Score=55.56 Aligned_cols=91 Identities=22% Similarity=0.252 Sum_probs=48.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEEC-CccCHHHHHHHHHHHhCCCC-------CCC---CCCC
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVS-KDLQLEKIQETIGKKIGLCN-------DSW---KNKS 159 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~-------~~~---~~~~ 159 (814)
.-..++|.|..|+|||||++.+.... . .+..+...+. +..++.++.......-+... .+. ....
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~~---~--~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~ 228 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYT---Q--ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIK 228 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhccc---C--CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHH
Confidence 44789999999999999999887754 1 1222222222 22233343333333322211 000 0111
Q ss_pred HHHHHHHHHHHh--ccCceEEEEccccCc
Q 003513 160 LEEKAHDIFKTL--SKKKFALLLDDLWER 186 (814)
Q Consensus 160 ~~~~~~~l~~~l--~~~~~LlVlDdv~~~ 186 (814)
..+.+..+.+++ +++++|+++||+...
T Consensus 229 a~e~a~~iAEyfr~~g~~Vll~~Dsltr~ 257 (434)
T PRK07196 229 ATELCHAIATYYRDKGHDVLLLVDSLTRY 257 (434)
T ss_pred HHHHHHHHHHHhhhccCCEEEeecchhHH
Confidence 122233344443 578999999998654
No 491
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.35 E-value=0.034 Score=50.86 Aligned_cols=20 Identities=40% Similarity=0.655 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 003513 94 IIGLYGMGGVGKTTLLTQIN 113 (814)
Q Consensus 94 ~i~i~G~gGiGKTtLa~~~~ 113 (814)
.|+|+|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999988
No 492
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.35 E-value=0.039 Score=54.27 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNK 115 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~ 115 (814)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999998743
No 493
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.35 E-value=0.14 Score=48.55 Aligned_cols=43 Identities=28% Similarity=0.374 Sum_probs=29.3
Q ss_pred cccchhHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 71 TVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 71 ~~vGr~~~~~~l~~~L~~~~~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
.++|-...++.|-=.+ +...|.++.|+.|+||||+.+.+..-.
T Consensus 15 ~yYg~~~aL~~i~l~i---~~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 15 LYYGDKHALKDINLDI---PKNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred EEECchhhhccCceec---cCCceEEEECCCCcCHHHHHHHHHhhc
Confidence 4677444444332211 345899999999999999999876544
No 494
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.35 E-value=0.058 Score=48.94 Aligned_cols=39 Identities=18% Similarity=0.338 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECC
Q 003513 93 GIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSK 133 (814)
Q Consensus 93 ~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 133 (814)
++|.|+|+.|+|||||++.+.+... +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 4799999999999999999999983 24455555555544
No 495
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.33 E-value=0.044 Score=51.27 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 91 AAGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 91 ~~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
...+++|+|..|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 46799999999999999999999887
No 496
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.31 E-value=0.053 Score=52.63 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
-.+++|+|..|+|||||++.++--.
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhccc
Confidence 3689999999999999999998765
No 497
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=94.31 E-value=0.086 Score=56.92 Aligned_cols=33 Identities=36% Similarity=0.542 Sum_probs=26.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCC
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKFVDNPKDFD 124 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~ 124 (814)
-+-.+|+|++|.||||+.+.++.+......+++
T Consensus 101 g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d 133 (614)
T KOG0927|consen 101 GRRYGLIGPNGSGKSTFLRAIAGREVPIPEHID 133 (614)
T ss_pred CceEEEEcCCCCcHhHHHHHHhcCCCCCCcccc
Confidence 367899999999999999999988644444444
No 498
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.30 E-value=0.032 Score=51.28 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 003513 94 IIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 94 ~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
+|.|.|+.|+||||+|+.++...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 499
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=94.30 E-value=0.073 Score=46.61 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 003513 92 AGIIGLYGMGGVGKTTLLTQINNKF 116 (814)
Q Consensus 92 ~~~i~i~G~gGiGKTtLa~~~~~~~ 116 (814)
-.+|.+.|.=|.||||+++.++...
T Consensus 15 g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 15 GDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHc
Confidence 3899999999999999999999886
No 500
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.30 E-value=0.05 Score=52.35 Aligned_cols=93 Identities=17% Similarity=0.161 Sum_probs=48.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEECCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 003513 93 GIIGLYGMGGVGKTTLLTQINNKFVDNPKDFDYVIWVVVSKDLQLEKIQETIGKKIGLCNDSWKNKSLEEKAHDIFKTLS 172 (814)
Q Consensus 93 ~~i~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 172 (814)
..+.|.|+.|.||||+++.+.... ... ..++.+ ........-..... ++..................+...++
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i---~~~-~~~i~i--ed~~E~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~lR 98 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFI---PPD-ERIITI--EDTAELQLPHPNWV-RLVTRPGNVEGSGEVTMADLLRSALR 98 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc---CCC-CCEEEE--CCccccCCCCCCEE-EEEEecCCCCCCCccCHHHHHHHHhc
Confidence 689999999999999999998876 222 223322 11110000000000 00000000001112233445556677
Q ss_pred cCceEEEEccccCccccccc
Q 003513 173 KKKFALLLDDLWERVDLKKI 192 (814)
Q Consensus 173 ~~~~LlVlDdv~~~~~~~~~ 192 (814)
..+=.++++.+.+.+.+..+
T Consensus 99 ~~pd~i~igEir~~ea~~~~ 118 (186)
T cd01130 99 MRPDRIIVGEVRGGEALDLL 118 (186)
T ss_pred cCCCEEEEEccCcHHHHHHH
Confidence 77888899999877655433
Done!