Query 003514
Match_columns 814
No_of_seqs 191 out of 759
Neff 4.7
Searched_HMMs 29240
Date Tue Mar 26 18:05:15 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003514.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1563-1566//hhsearch_pdb/003514hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gia_A Uncharacterized protein 1.0 1 1 35.0 10.3 84 220-314 125-212 (444)
2 3l1l_A Arginine/agmatine antip 1.0 1 1 34.6 7.1 83 221-311 126-212 (445)
3 4djk_A Probable glutamate/gamm 1.0 1 1 34.2 13.8 122 220-348 130-261 (511)
4 2l6n_A Uncharacterized protein 1.0 1 1 16.1 1.7 24 784-809 37-60 (132)
5 3luu_A Uncharacterized protein 1.0 1 1 15.5 1.2 22 784-805 35-56 (101)
6 1us7_B HSP90 CO-chaperone CDC3 1.0 1 1 13.4 -7.9 63 543-605 88-150 (265)
7 1jl0_A Adometdc, S-adenosylmet 1.0 1 1 13.4 2.3 39 723-763 113-151 (334)
8 3o2g_A Gamma-butyrobetaine dio 1.0 1 1 13.3 1.4 12 784-795 32-43 (388)
9 3hbe_X Class IV chitinase CHIA 1.0 1 1 12.8 -0.2 43 315-387 97-144 (204)
10 1mhm_A Adometdc, samdc, S-aden 1.0 1 1 12.7 2.3 21 743-763 62-86 (288)
No 1
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=1.00 E-value=1 Score=35.00 Aligned_cols=84 Identities=18% Similarity=0.241 Sum_probs=45.2
Q ss_pred EEHHHHHHHHHHHHHHCCCCCCCCC---CHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE-CCHHHHHHHHHHCCCCEEEE
Q ss_conf 8404789999998550124221100---0144999999999875434012358442121-49688999987269621344
Q 003514 220 VVLVAVVILVGLFSLQHYGTDRVGW---LFAPIVLLWFLLIGGIGMLNIWKYDSSVLKA-FSPVYIYRYFRRGGRDGWTS 295 (814)
Q Consensus 220 Vv~is~~ILv~LF~~Q~~GT~kvg~---~F~PIm~iWf~~i~~~GiynI~~~~p~Vl~A-lnP~y~~~ff~~~~~~g~~~ 295 (814)
...+++++++.+..+.-+|+...+. .+..+.++=++.+...|+... +|+-+.. ++|.-...+ +..
T Consensus 125 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~~~~~~~~~~~~g~~~~--------~~~ 193 (444)
T 3gia_A 125 IAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---HPSYVIPDLAPSAVSGM--------IFA 193 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CGGGTSCCCSHHHHHHH--------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CHHHCCCCCCCCCHHHH--------HHH
T ss_conf 9999999999999999983899999999999999999999999999975---82215887787535789--------999
Q ss_pred ECCEEEEECCCCCCCCCCC
Q ss_conf 1234443045110025789
Q 003514 296 LGGIMLSITGTEALFADLA 314 (814)
Q Consensus 296 LGgv~LciTG~EAlyADlG 314 (814)
+.-.+.+.+|.|+.-.--+
T Consensus 194 ~~~~~~a~~G~e~~~~~~~ 212 (444)
T 3gia_A 194 SAIFFLSYMGFGVITNASE 212 (444)
T ss_dssp HHHGGGGGTHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999970999998798
No 2
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=1.00 E-value=1 Score=34.58 Aligned_cols=83 Identities=16% Similarity=0.122 Sum_probs=41.4
Q ss_pred EHHHHHHHHHHHHHHCCCCCCCCCC---HHHHHHHHHHHHHHHHHHHCCCCCCCEE-EECCHHHHHHHHHHCCCCEEEEE
Q ss_conf 4047899999985501242211000---1449999999998754340123584421-21496889999872696213441
Q 003514 221 VLVAVVILVGLFSLQHYGTDRVGWL---FAPIVLLWFLLIGGIGMLNIWKYDSSVL-KAFSPVYIYRYFRRGGRDGWTSL 296 (814)
Q Consensus 221 v~is~~ILv~LF~~Q~~GT~kvg~~---F~PIm~iWf~~i~~~GiynI~~~~p~Vl-~AlnP~y~~~ff~~~~~~g~~~L 296 (814)
..+++++++.+..+.-+|.+..+.. +.++.++=++.+...|+. ..+|..+ ..++|.-.. ....-+..+
T Consensus 126 ~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 197 (445)
T 3l1l_A 126 TITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWF---WFRGETYMAAWNVSGLG-----TFGAIQSTL 197 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTST---TCCCCCCCCC----------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCHHHCCCCCCCCCCC-----CHHHHHHHH
T ss_conf 9999999999999999563999999999999999999999999999---95715306656766775-----078999999
Q ss_pred CCEEEEECCCCCCCC
Q ss_conf 234443045110025
Q 003514 297 GGIMLSITGTEALFA 311 (814)
Q Consensus 297 Ggv~LciTG~EAlyA 311 (814)
...+.+.+|-|+.-.
T Consensus 198 ~~~~~af~G~e~~~~ 212 (445)
T 3l1l_A 198 NVTLWSFIGVESASV 212 (445)
T ss_dssp HHHHHTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999974999999
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=1.00 E-value=1 Score=34.24 Aligned_cols=122 Identities=17% Similarity=0.193 Sum_probs=63.7
Q ss_pred EEHHHHHHHHHHHHHHCCCCCCCCCCHHHH----HHHHHHHHHHHHHHHCCCCCCCEE----EECCHHHHHHHHHHCCCC
Q ss_conf 840478999999855012422110001449----999999998754340123584421----214968899998726962
Q 003514 220 VVLVAVVILVGLFSLQHYGTDRVGWLFAPI----VLLWFLLIGGIGMLNIWKYDSSVL----KAFSPVYIYRYFRRGGRD 291 (814)
Q Consensus 220 Vv~is~~ILv~LF~~Q~~GT~kvg~~F~PI----m~iWf~~i~~~GiynI~~~~p~Vl----~AlnP~y~~~ff~~~~~~ 291 (814)
...+++++++.+..+.-+|....+....-. +++-++.+...|++.+...+|.-+ ..+.|.. .+..
T Consensus 130 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 202 (511)
T 4djk_A 130 KTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDF-------SKVG 202 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCT-------TSTT
T ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-------CCCH
T ss_conf 999999999999999981809999998999999999999999999999994698666667612258886-------6413
Q ss_pred EEEEECCEEEEECCCCCCCCCCCCCC--CCCEEEHHHHHHHHHHHHHHCCHHHHHHCCC
Q ss_conf 13441234443045110025789988--7410001467787889875100034650058
Q 003514 292 GWTSLGGIMLSITGTEALFADLAHFP--VSAIQIAFTVVVFPCLLLAYSGQAAYLMNHQ 348 (814)
Q Consensus 292 g~~~LGgv~LciTG~EAlyADlGHF~--~~~I~~aw~~~v~P~LiL~Y~GQaA~l~~~p 348 (814)
+|..+..++.+.+|-|+.-.--+... +|.+..+-..-+.-+.++-....-++...-|
T Consensus 203 ~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~ 261 (511)
T 4djk_A 203 TLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIP 261 (511)
T ss_dssp TTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECC
T ss_conf 99999999999932988888898642865430699999999999999999999970637
No 4
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=1.00 E-value=1 Score=16.09 Aligned_cols=24 Identities=17% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEE
Q ss_conf 99997320388743335988847623
Q 003514 784 YAFLRKICRENSVIFNVPHESLLNVG 809 (814)
Q Consensus 784 Y~FLRkNcR~~~~~L~IPh~sLIEVG 809 (814)
|.|||.||+.+...-.- .+++..|
T Consensus 37 ~~wLRd~Cpcaec~~~~--qr~l~~~ 60 (132)
T 2l6n_A 37 CELLRVYSPSAEVHGHG--NPVLVTH 60 (132)
T ss_dssp HHHHHHSCSCSSSSSSS--CCCCCCC
T ss_pred HHHHHHCCCCCCCCCCC--CCCCCCC
T ss_conf 99998559980439845--4404567
No 5
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=1.00 E-value=1 Score=15.55 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCCCCCCCCCCCE
Q ss_conf 9999732038874333598884
Q 003514 784 YAFLRKICRENSVIFNVPHESL 805 (814)
Q Consensus 784 Y~FLRkNcR~~~~~L~IPh~sL 805 (814)
|.|||.||+.+...-.-+..++
T Consensus 35 ~~wLRd~c~ca~c~~~~t~qr~ 56 (101)
T 3luu_A 35 FEHLRVECPCAECKGHTPDQAQ 56 (101)
T ss_dssp HHHHHHTCCCC----------C
T ss_pred HHHHHHHCCCHHHCCCCCCCCC
T ss_conf 9999751988455476678612
No 6
>1us7_B HSP90 CO-chaperone CDC37; chaperone CO-chaperone regulation, ATP-binding, H shock,; 2.3A {Homo sapiens} SCOP: a.205.1.1 PDB: 2k5b_B 2w0g_A
Probab=1.00 E-value=1 Score=13.43 Aligned_cols=63 Identities=21% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHCCCCCCCCEECCEEEEEECCCCCCCHHHHHHHHHCCCCCEEE
Q ss_conf 499999888723889688984399999842211179970688886236788753177433279
Q 003514 543 GTVKRYEFEMHSKVSMAWILGLGPSLGLVRVPGIGLVYTELASGVPHIFSHFITNLPAIHSVV 605 (814)
Q Consensus 543 G~~~~~~~~~~~~~~~~~~~~l~~~~~~~rvpG~gif~t~~~~giP~~f~h~i~~~~alhev~ 605 (814)
|...+-+.-.++.+-+..++++...++...-.|+..||++....-|.+...|.+-.....+++
T Consensus 88 gk~~~m~qvaHQ~llLQYIlELak~L~~dpr~~v~~FF~ki~~~~~~~~~~F~ddV~~~~~RI 150 (265)
T 1us7_B 88 EKCALMEQVAHQTIVMQFILELAKSLKVDPRACFRQFFTKIKTADRQYMEGFNDELEAFKERV 150 (265)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 789999999999999999999998759980549999999882048699999999999999999
No 7
>1jl0_A Adometdc, S-adenosylmethionine decarboxylase proenzyme; spermidine biosynthesis, lyase, pyruvate, sandwich, allosteric enzyme, pyruvoyl; 1.50A {Homo sapiens} SCOP: d.156.1.1 PDB: 1msv_A 1i7b_A* 1i79_A* 1i72_A* 1i7c_A* 1i7m_A* 3dz6_A* 3dz2_A* 3dz5_A* 3dz4_A* 3dz7_A* 3h0w_A* 3h0v_A* 1jen_A 3dz3_A* 3ep9_A 3ep6_A* 3ep3_A* 3ep8_A* 3ep5_A* ...
Probab=1.00 E-value=1 Score=13.39 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 77521333467556799642688999997572791999530
Q 003514 723 SPLHVNSTVMSSSQMSSHTETDELEFLNSCRDAGVVHILGN 763 (814)
Q Consensus 723 ~~vrf~~~~~~~~~~~~~~veeEl~~L~~AkeaGVvYILG~ 763 (814)
+|-.|.-+...+.+ ...-++|.+.|++....|.+|++|+
T Consensus 113 sRknf~fP~~Q~~p--H~sf~eEv~~L~~~F~~G~aY~~G~ 151 (334)
T 1jl0_A 113 SRKNFMKPSHQGYP--HRNFQEEIEFLNAIFPNGAGYCMGR 151 (334)
T ss_dssp EEECCSSGGGCCTT--CSSHHHHHHHHHTTCSSEEEEEESC
T ss_pred CCCCCCCCCCCCCC--CCCHHHHHHHHHHHCCCCCEEEECC
T ss_conf 46478883658876--5898999999998647872799379
No 8
>3o2g_A Gamma-butyrobetaine dioxygenase; gamma-butyrobetaine hydroxylase, 2-OXOG dioxygenase 1, oxidoreductase, structural genomics; HET: OGA NM2; 1.78A {Homo sapiens} PDB: 3ms5_A* 3n6w_A
Probab=1.00 E-value=1 Score=13.31 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCC
Q ss_conf 999973203887
Q 003514 784 YAFLRKICRENS 795 (814)
Q Consensus 784 Y~FLRkNcR~~~ 795 (814)
|.|||.||+.+.
T Consensus 32 ~~wLRd~C~c~~ 43 (388)
T 3o2g_A 32 AVWLRDNCPCSD 43 (388)
T ss_dssp HHHHHHTCCSTT
T ss_pred HHHHHHCCCCCC
T ss_conf 799975499964
No 9
>3hbe_X Class IV chitinase CHIA4-PA2; endochitinase, family 19, conformational changes, chitin-binding, glycosidase, hydrolase; 1.55A {Picea abies} SCOP: d.2.1.0 PDB: 3hbd_A 3hbh_A
Probab=1.00 E-value=1 Score=12.84 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=0.0
Q ss_pred CCCCCCEEEHHHHHHHHHHHHHHCCHHHH----HHCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 98874100014677878898751000346----500588434-64310246000016799998877778899985005
Q 003514 315 HFPVSAIQIAFTVVVFPCLLLAYSGQAAY----LMNHQDHVV-DAFYRSIPAQLVEGLGSGAWPYRGLRSDPSDSIYW 387 (814)
Q Consensus 315 HF~~~~I~~aw~~~v~P~LiL~Y~GQaA~----l~~~p~~~~-n~Fy~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~w 387 (814)
.+||.+||++|-. ||---+.+ |+.||+.+. +|-+..... ..||
T Consensus 97 Y~GRG~IQLTg~~--------NY~~~g~~lg~Dll~nPdlva~dp~~a~~sA----------------------~wfW 144 (204)
T 3hbe_X 97 YHGRGPLQLSWNY--------NYGAAGKSIGFDGLNNPEKVGQDSTISFKTA----------------------VWFW 144 (204)
T ss_dssp CCCBTTTTBCSHH--------HHHHHHHHHTSCTTTCGGGGGTCHHHHHHHH----------------------HHHH
T ss_pred CCCCCCEECCCHH--------HHHHHHHHHCCCCCCCHHHHHHCHHHHHHHH----------------------HHHH
T ss_conf 6478853436288--------9999999958861359899854879999878----------------------7654
No 10
>1mhm_A Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP: d.156.1.1
Probab=1.00 E-value=1 Score=12.66 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH----HCCCEEEEEE
Q ss_conf 68899999757----2791999530
Q 003514 743 TDELEFLNSCR----DAGVVHILGN 763 (814)
Q Consensus 743 eeEl~~L~~Ak----eaGVvYILG~ 763 (814)
+||.+.|++.. ..|.+|++|+
T Consensus 62 ~eEV~~L~~~F~~~~~~G~aY~~G~ 86 (288)
T 1mhm_A 62 SEEVAVLDGYFGKLAAGSKAVIMGS 86 (288)
T ss_dssp HHHHHHHHHHHTTSTTCEEEEEESS
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 9999999998621379961689489
Done!