Query 003514
Match_columns 814
No_of_seqs 191 out of 759
Neff 4.7
Searched_HMMs 13730
Date Tue Mar 26 18:09:52 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003514.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1563-1566//hhsearch_scop/003514hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 4.7 77 0.0056 7.7 3.8 32 384-422 42-73 (173)
2 d1or7a2 a.177.1.1 (A:-1-111) S 3.7 1E+02 0.0075 6.9 2.6 25 772-796 73-97 (113)
3 d2h8pc1 f.14.1.1 (C:22-78) Pot 3.6 1.1E+02 0.0077 6.8 1.6 42 329-394 13-54 (57)
4 d1dx5i1 g.3.11.1 (I:345-387) T 2.8 1.4E+02 0.01 6.0 0.2 28 623-653 13-40 (43)
5 d2e74h1 f.23.27.1 (H:3-29) Pet 2.8 1.4E+02 0.01 6.0 2.1 19 523-541 5-23 (27)
6 d1ovya_ c.55.4.1 (A:) Ribosoma 2.8 1.5E+02 0.011 5.9 1.1 17 602-618 6-22 (97)
7 d2j5ha1 g.3.11.7 (A:1-39) Crip 2.7 1.4E+02 0.01 6.0 -0.1 8 519-526 7-14 (39)
8 d1mkfa_ b.116.1.1 (A:) Viral c 2.7 1.5E+02 0.011 5.8 0.4 19 67-85 280-298 (371)
9 d2ccaa1 a.93.1.3 (A:26-435) Ca 2.6 75 0.0055 7.8 -1.6 15 311-325 68-82 (410)
10 d1ug8a_ d.68.7.1 (A:) Poly(A)- 2.6 1.5E+02 0.011 5.7 0.6 28 644-671 1-28 (87)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=4.66 E-value=77 Score=7.75 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 500569999999999998677562446899999819986
Q 003514 384 SIYWPVFIVATAAAIVASQATISATFSIIKQALALGCFP 422 (814)
Q Consensus 384 ~~~wP~~vlAtlAaIIASQA~Isg~FSii~Qai~Lg~fP 422 (814)
..|.|+ ++-++.-+++|+.. ++-+++++|-.-
T Consensus 42 a~fiPl--i~~~gGN~G~Qs~t-----i~iR~La~g~i~ 73 (173)
T d2yvxa3 42 AFYVPV--LLGTGGNTGNQSAT-----LIIRALATRDLD 73 (173)
T ss_dssp CCCSHH--HHHHHHHHHHHHHH-----HHHHHHHTTCSC
T ss_pred HHHHHH--HHCCCCHHHHHHHH-----HHHHHHHCCCCC
T ss_conf 999999--92587639999999-----999998603433
No 2
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=3.69 E-value=1e+02 Score=6.92 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9636899999999999732038874
Q 003514 772 SKFYKKIAIDYIYAFLRKICRENSV 796 (814)
Q Consensus 772 SsflKKlvIN~~Y~FLRkNcR~~~~ 796 (814)
.+|+.+++.|.+++++|++-|.+..
T Consensus 73 ~~wl~~I~~n~~~d~~R~~~r~~~~ 97 (113)
T d1or7a2 73 YTWLYRIAVNTAKNYLVAQGRRPPS 97 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCTH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999999999999996478888
No 3
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=3.59 E-value=1.1e+02 Score=6.83 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=25.2
Q ss_pred HHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 878898751000346500588434643102460000167999988777788999850056999999
Q 003514 329 VFPCLLLAYSGQAAYLMNHQDHVVDAFYRSIPAQLVEGLGSGAWPYRGLRSDPSDSIYWPVFIVAT 394 (814)
Q Consensus 329 v~P~LiL~Y~GQaA~l~~~p~~~~n~Fy~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~wP~~vlAt 394 (814)
.+-++++--++-..|+..+.. .+.-|.++|+ .++|-+.-+.|
T Consensus 13 ~~~~i~i~~~s~~~y~~E~~~--~~~~f~sip~----------------------a~WWaivT~TT 54 (57)
T d2h8pc1 13 VLLVIVLLAGSYLAVLAERGA--PGAQLITYPR----------------------ALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS--TTCCCCSHHH----------------------HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCH----------------------HHHHHEEEEEC
T ss_conf 999999999999999983589--9755364506----------------------44645035431
No 4
>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.82 E-value=1.4e+02 Score=5.98 Aligned_cols=28 Identities=11% Similarity=0.409 Sum_probs=20.6
Q ss_pred EEEEEEECCCCCCEEEEEEEEEECCCCCCHH
Q ss_conf 7999775699977899999863034789717
Q 003514 623 RFLVKRIGPKNFHMFRCVARYGYKDLHKKDE 653 (814)
Q Consensus 623 R~~v~~i~~~~~~~yRvvvRYGY~D~~~~~~ 653 (814)
.+.-..+++ +=|||+.+-||+-.++.|.
T Consensus 13 E~qCqP~~~---~~Y~CiCaeGFaP~p~~Ph 40 (43)
T d1dx5i1 13 EYQCQPLDQ---TSYLCVCAEGFAPIPHEPH 40 (43)
T ss_dssp SSEEEECSS---SCEEEECCTTEEEETTEEE
T ss_pred CEEEEECCC---CCCEEEECCCCCCCCCCCC
T ss_conf 034151798---7526781266545899866
No 5
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.82 E-value=1.4e+02 Score=5.98 Aligned_cols=19 Identities=37% Similarity=0.964 Sum_probs=9.8
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q ss_conf 7088999999998776655
Q 003514 523 GWVPLVIAAAFLVIMYVWH 541 (814)
Q Consensus 523 gW~pl~la~v~~~iM~~W~ 541 (814)
||+.++.-+.-..-|..|-
T Consensus 5 gwv~llvvftwsiamvvwg 23 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWG 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHEEEEEEEC
T ss_conf 5758888763223468871
No 6
>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=2.76 E-value=1.5e+02 Score=5.90 Aligned_cols=17 Identities=18% Similarity=0.147 Sum_probs=6.1
Q ss_pred CEEEEEEEEEEEEECCC
Q ss_conf 32799999888300145
Q 003514 602 HSVVVFVCVKYLPVYTV 618 (814)
Q Consensus 602 hev~Vfl~Ik~~~vP~V 618 (814)
|...||-|-++.-..-+
T Consensus 6 pRL~V~kSnkhiyaQlI 22 (97)
T d1ovya_ 6 PRLSVFRSNKHIYAQII 22 (97)
T ss_dssp CSEEEEEETTEEEEEEE
T ss_pred CEEEEEEECCEEEEEEE
T ss_conf 78999983783899999
No 7
>d2j5ha1 g.3.11.7 (A:1-39) Cripto growth factor {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.74 E-value=1.4e+02 Score=6.02 Aligned_cols=8 Identities=38% Similarity=1.223 Sum_probs=0.0
Q ss_pred CCCCCCHH
Q ss_conf 35787088
Q 003514 519 VDQGGWVP 526 (814)
Q Consensus 519 v~~GgW~p 526 (814)
||||-|+|
T Consensus 7 vpHg~w~~ 14 (39)
T d2j5ha1 7 ILHGTWLP 14 (39)
T ss_dssp CCCTTCSS
T ss_pred CCCCCEEC
T ss_conf 34876110
No 8
>d1mkfa_ b.116.1.1 (A:) Viral chemokine binding protein m3 {Murid herpesvirus 4, MuHV-4 [TaxId: 33708]}
Probab=2.68 E-value=1.5e+02 Score=5.81 Aligned_cols=19 Identities=37% Similarity=0.630 Sum_probs=0.0
Q ss_pred CCHHHHHHCCCCCCCCCCC
Q ss_conf 5401132013688989948
Q 003514 67 TSPLYVFYNTFPHGIDDPE 85 (814)
Q Consensus 67 TSPLYv~~~~f~~~~~~~~ 85 (814)
|||+||+..-|.....+.+
T Consensus 280 ~~P~YVm~~YF~St~~N~~ 298 (371)
T d1mkfa_ 280 TSPVYVMAAYFDSTHENPV 298 (371)
T ss_dssp CSCEEEEEEEECCCCCCTT
T ss_pred CCCEEEEEEEECCCCCCCC
T ss_conf 6740678875066666766
No 9
>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=2.64 E-value=75 Score=7.82 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=0.0
Q ss_pred CCCCCCCCCCEEEHH
Q ss_conf 578998874100014
Q 003514 311 ADLAHFPVSAIQIAF 325 (814)
Q Consensus 311 ADlGHF~~~~I~~aw 325 (814)
||-||++..=||+||
T Consensus 68 aD~G~ygP~lVRlAW 82 (410)
T d2ccaa1 68 ADYGHYGPLFIRMAW 82 (410)
T ss_dssp CGGGCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHH
T ss_conf 545663300110022
No 10
>d1ug8a_ d.68.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.63 E-value=1.5e+02 Score=5.74 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=0.0
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3034789717799989999999998522
Q 003514 644 GYKDLHKKDENFEKKLFDSLFLFVRLEA 671 (814)
Q Consensus 644 GY~D~~~~~~~fe~~lv~~L~eFI~~E~ 671 (814)
|=.-.+++.+.|.+.+++++.+|+..|.
T Consensus 1 g~~~~~~d~k~fI~~v~erIe~fL~see 28 (87)
T d1ug8a_ 1 GSSGSSGDQKKFIDQVIEKIEDFLQSEE 28 (87)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9988715678999999999999970866
Done!