Query 003515
Match_columns 814
No_of_seqs 492 out of 4552
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 00:54:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003515.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003515hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.2E-73 6.9E-78 656.3 39.5 628 8-733 2-652 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.4E-54 5.2E-59 528.4 44.8 563 165-780 182-835 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.9E-41 6.2E-46 355.2 15.5 271 172-446 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.8 1.8E-20 3.9E-25 230.6 17.6 231 542-781 57-295 (968)
5 PLN00113 leucine-rich repeat r 99.8 9.7E-19 2.1E-23 215.4 16.2 181 598-782 160-344 (968)
6 KOG0444 Cytoskeletal regulator 99.7 5.3E-19 1.2E-23 185.7 -4.4 238 556-806 129-375 (1255)
7 PLN03210 Resistant to P. syrin 99.6 5.1E-15 1.1E-19 182.6 19.7 222 550-780 656-903 (1153)
8 KOG0444 Cytoskeletal regulator 99.6 3.7E-18 8E-23 179.5 -7.3 220 565-796 116-342 (1255)
9 KOG4194 Membrane glycoprotein 99.5 1.2E-15 2.6E-20 160.0 1.6 213 565-784 210-430 (873)
10 KOG0472 Leucine-rich repeat pr 99.5 2E-15 4.3E-20 151.7 -0.0 90 692-782 428-540 (565)
11 KOG0617 Ras suppressor protein 99.5 7.8E-16 1.7E-20 136.8 -3.7 164 599-770 30-196 (264)
12 KOG4194 Membrane glycoprotein 99.5 3.4E-14 7.4E-19 149.3 6.0 89 697-785 267-356 (873)
13 KOG0617 Ras suppressor protein 99.5 1.4E-15 3E-20 135.3 -4.4 158 621-786 31-189 (264)
14 KOG0472 Leucine-rich repeat pr 99.5 5.5E-16 1.2E-20 155.7 -7.8 210 565-785 81-312 (565)
15 PRK04841 transcriptional regul 99.4 1.7E-11 3.8E-16 150.4 27.4 294 162-496 9-332 (903)
16 PRK15387 E3 ubiquitin-protein 99.3 3.2E-11 6.9E-16 138.4 14.9 211 552-783 223-458 (788)
17 PRK15370 E3 ubiquitin-protein 99.3 9.2E-12 2E-16 143.7 10.4 160 603-781 263-426 (754)
18 KOG0618 Serine/threonine phosp 99.3 3.1E-13 6.8E-18 149.9 -2.8 217 550-782 263-488 (1081)
19 PRK15370 E3 ubiquitin-protein 99.3 2.5E-11 5.5E-16 140.2 12.5 202 552-785 200-403 (754)
20 PRK00411 cdc6 cell division co 99.2 3.7E-09 8E-14 116.5 26.1 285 165-465 28-358 (394)
21 cd00116 LRR_RI Leucine-rich re 99.2 4.8E-12 1E-16 135.5 1.5 219 567-785 43-293 (319)
22 TIGR02928 orc1/cdc6 family rep 99.2 1.3E-08 2.8E-13 110.9 27.8 288 165-465 13-350 (365)
23 TIGR03015 pepcterm_ATPase puta 99.2 6.8E-09 1.5E-13 107.9 23.2 190 175-369 27-242 (269)
24 cd00116 LRR_RI Leucine-rich re 99.1 1.3E-11 2.8E-16 132.1 2.5 216 567-783 15-263 (319)
25 PF05659 RPW8: Arabidopsis bro 99.1 1.9E-09 4.2E-14 97.7 15.4 143 1-143 1-145 (147)
26 COG2909 MalT ATP-dependent tra 99.1 1.5E-08 3.3E-13 113.1 25.3 297 161-499 13-341 (894)
27 PF01637 Arch_ATPase: Archaeal 99.1 5.7E-10 1.2E-14 113.5 10.5 189 169-364 1-233 (234)
28 KOG0618 Serine/threonine phosp 99.1 1.7E-11 3.7E-16 136.3 -1.2 126 674-803 358-486 (1081)
29 KOG4237 Extracellular matrix p 99.1 1.6E-11 3.4E-16 124.0 -1.4 246 553-807 69-361 (498)
30 PRK15387 E3 ubiquitin-protein 99.1 7E-10 1.5E-14 127.5 11.6 125 623-768 342-467 (788)
31 COG3903 Predicted ATPase [Gene 99.0 1.9E-09 4.2E-14 111.2 12.9 287 187-495 13-313 (414)
32 KOG3207 Beta-tubulin folding c 99.0 5.1E-11 1.1E-15 122.1 -0.1 38 599-636 169-210 (505)
33 TIGR00635 ruvB Holliday juncti 99.0 1.4E-08 3E-13 107.6 17.4 265 167-464 4-288 (305)
34 KOG0532 Leucine-rich repeat (L 98.9 8.7E-11 1.9E-15 124.0 -1.2 169 604-783 77-247 (722)
35 PRK00080 ruvB Holliday junctio 98.9 4.4E-08 9.5E-13 104.4 17.9 267 165-464 23-309 (328)
36 PF05729 NACHT: NACHT domain 98.9 9E-09 2E-13 98.4 11.0 136 189-333 1-163 (166)
37 KOG1909 Ran GTPase-activating 98.9 3.8E-10 8.2E-15 112.8 -0.1 245 552-796 31-328 (382)
38 PTZ00112 origin recognition co 98.9 6.6E-07 1.4E-11 101.0 25.0 168 166-335 754-951 (1164)
39 PLN03150 hypothetical protein; 98.8 8.7E-09 1.9E-13 118.9 8.9 107 652-758 419-526 (623)
40 COG3899 Predicted ATPase [Gene 98.8 2.6E-07 5.5E-12 109.5 21.3 306 169-494 2-384 (849)
41 KOG4237 Extracellular matrix p 98.8 4.1E-10 8.9E-15 113.9 -1.9 220 549-778 89-354 (498)
42 PTZ00202 tuzin; Provisional 98.7 7.6E-06 1.6E-10 85.9 27.0 164 158-332 253-433 (550)
43 KOG3207 Beta-tubulin folding c 98.7 3.7E-09 8E-14 108.7 -0.3 204 571-782 117-338 (505)
44 PLN03150 hypothetical protein; 98.7 5.4E-08 1.2E-12 112.4 8.8 106 676-781 419-526 (623)
45 PRK13342 recombination factor 98.6 2.1E-07 4.5E-12 102.3 12.9 174 166-366 11-197 (413)
46 COG2256 MGS1 ATPase related to 98.6 2.2E-07 4.8E-12 95.4 11.6 167 167-360 24-207 (436)
47 PRK07003 DNA polymerase III su 98.6 4.4E-06 9.4E-11 94.2 21.5 188 167-365 16-221 (830)
48 COG4886 Leucine-rich repeat (L 98.6 3.7E-08 8E-13 108.6 5.2 169 602-780 116-287 (394)
49 PRK12402 replication factor C 98.6 1.6E-06 3.4E-11 93.5 17.0 193 167-364 15-225 (337)
50 PF05496 RuvB_N: Holliday junc 98.5 1.9E-06 4.1E-11 83.0 14.3 172 163-369 20-225 (233)
51 PF14580 LRR_9: Leucine-rich r 98.5 5.9E-08 1.3E-12 91.4 3.7 122 651-778 19-148 (175)
52 PRK06893 DNA replication initi 98.5 2.3E-06 4.9E-11 86.0 15.2 144 188-365 39-203 (229)
53 KOG0532 Leucine-rich repeat (L 98.5 6.5E-09 1.4E-13 110.2 -3.4 142 621-773 119-260 (722)
54 PF13401 AAA_22: AAA domain; P 98.5 3.6E-07 7.7E-12 83.4 8.1 116 187-306 3-125 (131)
55 COG4886 Leucine-rich repeat (L 98.5 1.5E-07 3.2E-12 103.8 6.6 181 568-764 109-294 (394)
56 KOG1259 Nischarin, modulator o 98.5 2E-08 4.4E-13 98.0 -0.4 108 650-763 306-415 (490)
57 PRK14961 DNA polymerase III su 98.5 6.4E-06 1.4E-10 88.9 18.4 187 166-363 15-218 (363)
58 COG1474 CDC6 Cdc6-related prot 98.5 1.1E-05 2.3E-10 86.1 19.7 166 166-334 16-204 (366)
59 cd00009 AAA The AAA+ (ATPases 98.5 1.2E-06 2.6E-11 81.7 10.9 120 170-307 1-130 (151)
60 PLN03025 replication factor C 98.5 5.8E-06 1.3E-10 87.7 17.4 174 166-361 12-196 (319)
61 PRK12323 DNA polymerase III su 98.5 4.2E-06 9E-11 93.1 16.3 192 167-364 16-224 (700)
62 KOG4658 Apoptotic ATPase [Sign 98.4 1.2E-07 2.5E-12 111.9 4.2 151 622-779 522-677 (889)
63 KOG1909 Ran GTPase-activating 98.4 2.4E-08 5.2E-13 100.1 -1.4 191 569-759 86-310 (382)
64 PRK00440 rfc replication facto 98.4 2.5E-05 5.4E-10 83.5 21.7 171 167-362 17-200 (319)
65 PRK15386 type III secretion pr 98.4 4.6E-07 1E-11 95.7 7.9 135 621-781 50-188 (426)
66 PRK14949 DNA polymerase III su 98.4 4.4E-06 9.5E-11 96.1 16.2 170 167-363 16-218 (944)
67 KOG1259 Nischarin, modulator o 98.4 1.2E-07 2.5E-12 92.8 2.9 207 569-783 176-412 (490)
68 TIGR03420 DnaA_homol_Hda DnaA 98.4 5.1E-06 1.1E-10 83.8 15.0 160 174-367 24-203 (226)
69 PF14580 LRR_9: Leucine-rich r 98.4 3E-07 6.5E-12 86.7 5.5 126 671-801 15-148 (175)
70 PRK14960 DNA polymerase III su 98.4 6.9E-06 1.5E-10 91.7 16.2 169 167-363 15-217 (702)
71 PRK04195 replication factor C 98.4 2.2E-05 4.7E-10 88.3 20.6 170 165-364 12-201 (482)
72 PF13191 AAA_16: AAA ATPase do 98.4 7.5E-07 1.6E-11 86.8 7.5 48 168-217 1-51 (185)
73 PF14516 AAA_35: AAA-like doma 98.4 0.00013 2.8E-09 77.6 24.8 201 160-372 4-246 (331)
74 PRK09112 DNA polymerase III su 98.3 2.4E-05 5.2E-10 83.2 18.0 194 161-365 17-240 (351)
75 PRK14963 DNA polymerase III su 98.3 1.8E-05 4E-10 88.1 17.8 189 166-362 13-214 (504)
76 PRK08691 DNA polymerase III su 98.3 1.6E-05 3.4E-10 89.8 16.9 168 167-363 16-218 (709)
77 PRK07994 DNA polymerase III su 98.3 1.5E-05 3.2E-10 90.4 16.7 186 167-364 16-219 (647)
78 PRK07471 DNA polymerase III su 98.3 2.9E-05 6.3E-10 83.0 18.1 196 162-365 14-238 (365)
79 PRK13341 recombination factor 98.3 7E-06 1.5E-10 95.0 13.8 168 167-360 28-212 (725)
80 PRK07940 DNA polymerase III su 98.3 1.8E-05 4E-10 85.3 16.1 166 168-365 6-213 (394)
81 PRK05564 DNA polymerase III su 98.3 2.5E-05 5.3E-10 82.8 16.9 169 168-364 5-189 (313)
82 PRK14958 DNA polymerase III su 98.3 1.9E-05 4.1E-10 88.3 16.7 173 167-363 16-218 (509)
83 PRK14957 DNA polymerase III su 98.3 2.3E-05 5E-10 87.5 17.1 173 167-367 16-223 (546)
84 PRK14956 DNA polymerase III su 98.3 1.1E-05 2.3E-10 87.6 13.8 186 167-360 18-217 (484)
85 PRK14964 DNA polymerase III su 98.3 2.8E-05 6.2E-10 85.5 17.2 172 167-362 13-214 (491)
86 PRK08727 hypothetical protein; 98.2 3.1E-05 6.7E-10 78.0 15.9 160 169-362 21-201 (233)
87 TIGR00678 holB DNA polymerase 98.2 3.6E-05 7.8E-10 75.0 15.6 152 177-361 2-187 (188)
88 PRK06645 DNA polymerase III su 98.2 1.6E-05 3.5E-10 88.1 14.6 188 167-362 21-226 (507)
89 PRK14962 DNA polymerase III su 98.2 3.5E-05 7.6E-10 85.2 16.9 178 166-368 13-222 (472)
90 PRK08084 DNA replication initi 98.2 4E-05 8.6E-10 77.3 15.9 166 166-365 22-209 (235)
91 PRK14969 DNA polymerase III su 98.2 5.9E-05 1.3E-09 84.9 18.9 171 167-365 16-221 (527)
92 PRK15386 type III secretion pr 98.2 2.5E-06 5.5E-11 90.2 7.1 133 600-757 50-187 (426)
93 KOG2028 ATPase related to the 98.2 1.9E-05 4.1E-10 79.8 12.8 171 167-360 138-331 (554)
94 cd01128 rho_factor Transcripti 98.2 2.8E-06 6E-11 85.5 6.5 93 187-281 15-113 (249)
95 PRK14951 DNA polymerase III su 98.2 4.8E-05 1E-09 86.1 17.0 190 167-363 16-223 (618)
96 PF13173 AAA_14: AAA domain 98.2 4.2E-06 9.2E-11 75.7 7.0 113 188-325 2-127 (128)
97 KOG2120 SCF ubiquitin ligase, 98.1 8.4E-08 1.8E-12 93.9 -4.9 147 651-797 234-391 (419)
98 TIGR02397 dnaX_nterm DNA polym 98.1 0.00011 2.3E-09 79.9 18.5 171 166-365 13-218 (355)
99 PRK14955 DNA polymerase III su 98.1 3.2E-05 7E-10 84.5 14.0 193 165-363 14-226 (397)
100 PRK05896 DNA polymerase III su 98.1 8.4E-05 1.8E-09 83.1 17.2 191 166-367 15-223 (605)
101 PF13855 LRR_8: Leucine rich r 98.1 2.4E-06 5.3E-11 65.8 3.2 60 651-710 1-60 (61)
102 PRK05642 DNA replication initi 98.1 6.8E-05 1.5E-09 75.5 14.4 144 189-366 46-209 (234)
103 PRK14970 DNA polymerase III su 98.1 0.00015 3.2E-09 78.9 18.1 171 167-362 17-206 (367)
104 PRK08903 DnaA regulatory inact 98.1 0.0001 2.2E-09 74.3 15.2 163 169-369 21-203 (227)
105 PRK09376 rho transcription ter 98.0 1.1E-05 2.4E-10 84.5 8.0 101 178-282 158-267 (416)
106 TIGR02903 spore_lon_C ATP-depe 98.0 0.00011 2.5E-09 84.3 16.6 47 167-213 154-200 (615)
107 PRK09087 hypothetical protein; 98.0 0.0001 2.2E-09 73.6 13.6 135 188-365 44-195 (226)
108 PRK07764 DNA polymerase III su 98.0 0.00014 3.1E-09 85.4 16.7 171 167-362 15-218 (824)
109 PRK09111 DNA polymerase III su 98.0 8E-05 1.7E-09 84.5 13.8 191 165-364 22-232 (598)
110 PRK08451 DNA polymerase III su 98.0 0.00034 7.4E-09 77.8 18.3 169 166-364 13-217 (535)
111 PRK14959 DNA polymerase III su 98.0 0.00017 3.7E-09 81.1 16.1 192 167-369 16-225 (624)
112 PRK07133 DNA polymerase III su 98.0 0.00025 5.4E-09 81.1 17.3 185 166-365 17-220 (725)
113 TIGR03345 VI_ClpV1 type VI sec 97.9 6.6E-05 1.4E-09 89.3 13.0 174 166-359 186-390 (852)
114 PF13855 LRR_8: Leucine rich r 97.9 6.3E-06 1.4E-10 63.5 3.0 57 676-733 2-59 (61)
115 PRK14950 DNA polymerase III su 97.9 0.00033 7.2E-09 80.4 18.0 189 166-364 15-220 (585)
116 PRK14954 DNA polymerase III su 97.9 0.00014 3.1E-09 82.7 14.6 196 166-365 15-229 (620)
117 PF00308 Bac_DnaA: Bacterial d 97.9 0.00052 1.1E-08 68.2 17.0 175 166-364 8-207 (219)
118 PRK07399 DNA polymerase III su 97.9 0.0013 2.8E-08 69.0 20.8 188 168-364 5-220 (314)
119 PF05621 TniB: Bacterial TniB 97.9 0.00038 8.1E-09 70.7 15.9 182 176-361 46-257 (302)
120 PRK06305 DNA polymerase III su 97.9 0.00036 7.7E-09 77.2 17.3 173 166-365 16-223 (451)
121 PRK14952 DNA polymerase III su 97.9 0.00039 8.5E-09 78.6 17.8 190 167-368 13-223 (584)
122 KOG2004 Mitochondrial ATP-depe 97.9 0.00023 4.9E-09 78.6 14.7 152 166-333 410-596 (906)
123 PRK14953 DNA polymerase III su 97.9 0.00055 1.2E-08 76.2 18.2 172 167-365 16-220 (486)
124 PRK14087 dnaA chromosomal repl 97.9 0.00073 1.6E-08 74.7 19.0 160 188-367 141-321 (450)
125 KOG0531 Protein phosphatase 1, 97.9 1.5E-06 3.3E-11 96.0 -2.2 175 570-761 90-269 (414)
126 TIGR02639 ClpA ATP-dependent C 97.9 9.6E-05 2.1E-09 87.3 12.7 148 167-333 182-358 (731)
127 PRK14971 DNA polymerase III su 97.9 0.00051 1.1E-08 78.7 18.0 171 167-362 17-219 (614)
128 TIGR01242 26Sp45 26S proteasom 97.9 0.00013 2.8E-09 79.1 12.4 165 166-359 121-328 (364)
129 TIGR00362 DnaA chromosomal rep 97.8 0.0024 5.2E-08 70.4 22.0 152 188-363 136-308 (405)
130 PHA02544 44 clamp loader, smal 97.8 0.00014 2.9E-09 77.5 11.8 140 165-330 19-170 (316)
131 KOG2543 Origin recognition com 97.8 0.00025 5.5E-09 72.8 12.8 159 166-331 5-191 (438)
132 KOG0989 Replication factor C, 97.8 0.00019 4.1E-09 71.6 11.5 177 165-359 34-224 (346)
133 PRK03992 proteasome-activating 97.8 0.00014 3E-09 79.1 11.2 163 167-358 131-336 (389)
134 PRK12422 chromosomal replicati 97.8 0.0093 2E-07 65.8 25.3 146 189-359 142-307 (445)
135 PRK06647 DNA polymerase III su 97.8 0.00078 1.7E-08 76.3 17.2 185 166-364 15-219 (563)
136 TIGR00767 rho transcription te 97.8 5.1E-05 1.1E-09 80.1 7.1 94 187-282 167-266 (415)
137 KOG2227 Pre-initiation complex 97.7 0.00088 1.9E-08 70.8 15.6 191 164-358 147-361 (529)
138 PRK14965 DNA polymerase III su 97.7 0.00085 1.8E-08 76.7 17.0 190 166-367 15-223 (576)
139 PRK05563 DNA polymerase III su 97.7 0.0015 3.3E-08 74.3 18.7 185 166-362 15-217 (559)
140 PRK14088 dnaA chromosomal repl 97.7 0.0009 1.9E-08 74.0 16.4 175 166-363 105-303 (440)
141 PRK00149 dnaA chromosomal repl 97.7 0.004 8.6E-08 69.6 21.5 152 188-363 148-320 (450)
142 COG0466 Lon ATP-dependent Lon 97.7 0.0042 9E-08 69.4 20.5 152 166-333 322-508 (782)
143 PRK11331 5-methylcytosine-spec 97.7 0.00019 4.1E-09 77.2 9.9 111 167-284 175-285 (459)
144 PRK14948 DNA polymerase III su 97.7 0.0016 3.4E-08 74.7 18.0 189 167-365 16-222 (620)
145 PRK10865 protein disaggregatio 97.6 0.0003 6.6E-09 84.1 12.2 44 167-210 178-221 (857)
146 KOG4341 F-box protein containi 97.6 1.1E-05 2.4E-10 83.2 -0.2 159 646-804 289-463 (483)
147 PRK14086 dnaA chromosomal repl 97.6 0.012 2.5E-07 66.4 23.1 151 189-363 315-486 (617)
148 KOG1859 Leucine-rich repeat pr 97.6 9.6E-07 2.1E-11 96.5 -8.8 106 650-760 186-292 (1096)
149 PRK06620 hypothetical protein; 97.6 0.0011 2.4E-08 65.5 13.3 130 189-363 45-187 (214)
150 PRK05707 DNA polymerase III su 97.6 0.0023 4.9E-08 67.6 16.4 90 269-365 104-203 (328)
151 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00034 7.3E-09 84.1 11.4 148 167-333 173-349 (852)
152 COG0593 DnaA ATPase involved i 97.6 0.0022 4.7E-08 68.5 15.8 147 188-358 113-279 (408)
153 KOG0531 Protein phosphatase 1, 97.6 1.2E-05 2.6E-10 88.8 -1.0 149 571-733 114-265 (414)
154 CHL00095 clpC Clp protease ATP 97.6 0.00045 9.7E-09 82.8 12.0 171 167-357 179-379 (821)
155 PRK08769 DNA polymerase III su 97.5 0.0033 7.1E-08 65.8 16.7 169 174-366 11-209 (319)
156 PF12799 LRR_4: Leucine Rich r 97.5 0.00012 2.6E-09 51.6 3.9 38 724-762 2-39 (44)
157 KOG2120 SCF ubiquitin ligase, 97.5 3.7E-06 8.1E-11 82.6 -5.1 173 551-750 210-390 (419)
158 CHL00181 cbbX CbbX; Provisiona 97.5 0.0023 4.9E-08 66.4 14.7 126 190-335 61-211 (287)
159 TIGR02881 spore_V_K stage V sp 97.5 0.0011 2.5E-08 68.1 12.5 43 168-210 7-64 (261)
160 PF12799 LRR_4: Leucine Rich r 97.5 0.00011 2.3E-09 51.8 3.1 42 747-788 1-42 (44)
161 COG3267 ExeA Type II secretory 97.4 0.007 1.5E-07 59.3 16.0 176 185-367 48-247 (269)
162 PF05673 DUF815: Protein of un 97.4 0.0032 7E-08 61.9 13.8 47 164-210 24-74 (249)
163 TIGR03689 pup_AAA proteasome A 97.4 0.0025 5.5E-08 70.6 14.6 151 167-333 182-378 (512)
164 PRK08116 hypothetical protein; 97.4 0.00062 1.3E-08 69.9 9.0 99 189-306 115-220 (268)
165 TIGR02880 cbbX_cfxQ probable R 97.4 0.0023 5E-08 66.4 13.3 125 190-334 60-209 (284)
166 PF00004 AAA: ATPase family as 97.4 0.00033 7.1E-09 63.7 6.2 21 191-211 1-21 (132)
167 COG2255 RuvB Holliday junction 97.4 0.0025 5.4E-08 63.1 12.3 170 163-367 22-225 (332)
168 PRK08058 DNA polymerase III su 97.4 0.0036 7.8E-08 66.5 14.8 141 169-331 7-180 (329)
169 PRK11034 clpA ATP-dependent Cl 97.4 0.00056 1.2E-08 79.9 9.3 43 168-210 187-229 (758)
170 KOG2035 Replication factor C, 97.3 0.014 3.1E-07 57.6 16.6 219 169-408 15-282 (351)
171 PRK06871 DNA polymerase III su 97.3 0.012 2.6E-07 61.7 17.4 169 175-362 10-200 (325)
172 KOG0991 Replication factor C, 97.3 0.0056 1.2E-07 58.6 13.3 101 166-284 26-126 (333)
173 KOG4579 Leucine-rich repeat (L 97.3 1.7E-05 3.7E-10 69.1 -3.2 111 652-766 28-142 (177)
174 TIGR00602 rad24 checkpoint pro 97.3 0.0017 3.7E-08 73.9 11.6 48 163-210 80-132 (637)
175 PRK06090 DNA polymerase III su 97.3 0.02 4.3E-07 59.9 18.5 160 175-365 11-201 (319)
176 KOG3665 ZYG-1-like serine/thre 97.3 8.6E-05 1.9E-09 85.8 1.1 34 673-708 171-204 (699)
177 smart00382 AAA ATPases associa 97.3 0.0016 3.5E-08 59.7 9.6 90 189-285 3-92 (148)
178 KOG3665 ZYG-1-like serine/thre 97.3 0.00022 4.8E-09 82.4 4.2 144 651-796 122-278 (699)
179 PTZ00361 26 proteosome regulat 97.2 0.00076 1.7E-08 73.6 7.9 163 167-358 183-388 (438)
180 TIGR00763 lon ATP-dependent pr 97.2 0.003 6.5E-08 75.3 13.5 44 167-210 320-369 (775)
181 PRK07993 DNA polymerase III su 97.2 0.013 2.9E-07 62.0 16.9 162 174-363 9-202 (334)
182 PTZ00454 26S protease regulato 97.2 0.0034 7.5E-08 68.0 12.5 164 167-359 145-351 (398)
183 PRK10536 hypothetical protein; 97.2 0.0035 7.5E-08 62.5 11.4 129 168-305 56-211 (262)
184 PRK12608 transcription termina 97.2 0.0017 3.7E-08 68.4 9.6 102 177-280 121-229 (380)
185 PF04665 Pox_A32: Poxvirus A32 97.2 0.00066 1.4E-08 67.3 5.9 36 189-227 14-49 (241)
186 KOG1514 Origin recognition com 97.2 0.014 3.1E-07 65.0 16.6 136 165-305 394-547 (767)
187 PRK10787 DNA-binding ATP-depen 97.1 0.0075 1.6E-07 71.3 15.0 45 166-210 321-371 (784)
188 PF00448 SRP54: SRP54-type pro 97.1 0.00062 1.4E-08 66.2 5.1 57 188-247 1-58 (196)
189 PF13177 DNA_pol3_delta2: DNA 97.1 0.0062 1.4E-07 57.4 11.5 115 171-308 1-143 (162)
190 TIGR01241 FtsH_fam ATP-depende 97.1 0.0048 1E-07 69.8 12.6 163 167-358 55-259 (495)
191 COG0542 clpA ATP-binding subun 97.1 0.014 3.1E-07 67.1 16.0 107 168-288 492-610 (786)
192 PRK08118 topology modulation p 97.0 0.00031 6.8E-09 66.5 2.2 35 189-224 2-37 (167)
193 COG1222 RPT1 ATP-dependent 26S 97.0 0.0093 2E-07 61.2 12.5 172 169-369 153-371 (406)
194 COG1373 Predicted ATPase (AAA+ 97.0 0.0076 1.6E-07 65.7 12.9 127 175-329 25-163 (398)
195 CHL00176 ftsH cell division pr 97.0 0.011 2.4E-07 68.0 14.5 162 167-357 183-386 (638)
196 KOG1859 Leucine-rich repeat pr 97.0 0.00013 2.7E-09 80.5 -1.1 154 622-784 83-268 (1096)
197 PRK10865 protein disaggregatio 97.0 0.04 8.6E-07 66.3 19.4 44 167-210 568-620 (857)
198 TIGR03345 VI_ClpV1 type VI sec 96.9 0.048 1E-06 65.4 19.9 44 167-210 566-618 (852)
199 PF07728 AAA_5: AAA domain (dy 96.9 0.0007 1.5E-08 62.2 3.6 84 191-291 2-85 (139)
200 KOG4579 Leucine-rich repeat (L 96.9 8E-05 1.7E-09 65.0 -2.7 83 696-780 50-133 (177)
201 TIGR02640 gas_vesic_GvpN gas v 96.9 0.019 4.1E-07 59.0 13.7 54 176-237 11-64 (262)
202 PF02562 PhoH: PhoH-like prote 96.9 0.002 4.3E-08 62.4 6.0 127 172-305 5-154 (205)
203 PRK08181 transposase; Validate 96.8 0.0031 6.7E-08 64.4 7.7 98 188-307 106-209 (269)
204 COG5238 RNA1 Ran GTPase-activa 96.8 0.00014 3.1E-09 70.9 -1.9 49 569-617 86-135 (388)
205 PHA00729 NTP-binding motif con 96.8 0.0065 1.4E-07 59.6 9.5 33 178-210 7-39 (226)
206 cd01133 F1-ATPase_beta F1 ATP 96.8 0.0047 1E-07 62.6 8.7 92 188-281 69-173 (274)
207 PF10443 RNA12: RNA12 protein; 96.8 0.076 1.6E-06 56.8 17.8 193 172-371 1-284 (431)
208 KOG2228 Origin recognition com 96.8 0.07 1.5E-06 54.5 16.3 164 167-333 24-219 (408)
209 PRK13531 regulatory ATPase Rav 96.8 0.0043 9.3E-08 67.6 8.5 41 168-210 21-61 (498)
210 PLN00020 ribulose bisphosphate 96.8 0.029 6.3E-07 58.7 13.9 24 187-210 147-170 (413)
211 PRK04132 replication factor C 96.7 0.037 7.9E-07 65.2 16.3 144 196-363 574-729 (846)
212 PRK12377 putative replication 96.7 0.01 2.2E-07 59.8 10.3 75 187-282 100-174 (248)
213 PRK07261 topology modulation p 96.7 0.0043 9.4E-08 59.1 7.1 21 190-210 2-22 (171)
214 PTZ00494 tuzin-like protein; P 96.7 1 2.2E-05 48.2 24.6 162 160-332 364-543 (664)
215 CHL00095 clpC Clp protease ATP 96.7 0.058 1.3E-06 64.9 18.2 44 167-210 509-561 (821)
216 smart00763 AAA_PrkA PrkA AAA d 96.7 0.0021 4.5E-08 67.4 5.0 46 166-211 50-101 (361)
217 KOG2982 Uncharacterized conser 96.7 0.00037 8.1E-09 68.9 -0.5 204 572-780 68-289 (418)
218 PRK06921 hypothetical protein; 96.7 0.0082 1.8E-07 61.5 9.3 39 187-227 116-154 (266)
219 PF01695 IstB_IS21: IstB-like 96.6 0.0035 7.5E-08 60.0 6.0 38 187-227 46-83 (178)
220 PRK06526 transposase; Provisio 96.6 0.0056 1.2E-07 62.1 7.5 23 188-210 98-120 (254)
221 PRK09183 transposase/IS protei 96.6 0.0078 1.7E-07 61.5 8.4 23 188-210 102-124 (259)
222 CHL00195 ycf46 Ycf46; Provisio 96.6 0.024 5.2E-07 63.1 12.8 144 188-358 259-428 (489)
223 PRK06964 DNA polymerase III su 96.5 0.017 3.7E-07 61.0 10.9 86 269-365 130-225 (342)
224 PF13207 AAA_17: AAA domain; P 96.5 0.0018 3.9E-08 57.8 3.1 21 190-210 1-21 (121)
225 KOG0733 Nuclear AAA ATPase (VC 96.5 0.029 6.4E-07 61.4 12.5 90 168-282 191-293 (802)
226 COG1223 Predicted ATPase (AAA+ 96.5 0.023 5.1E-07 55.5 10.5 163 167-358 121-318 (368)
227 COG5238 RNA1 Ran GTPase-activa 96.5 0.00069 1.5E-08 66.2 0.2 214 571-784 54-317 (388)
228 PRK04296 thymidine kinase; Pro 96.5 0.007 1.5E-07 58.8 7.2 110 189-307 3-116 (190)
229 COG0470 HolB ATPase involved i 96.5 0.022 4.8E-07 60.9 11.9 118 168-307 2-149 (325)
230 TIGR02902 spore_lonB ATP-depen 96.5 0.017 3.8E-07 65.5 11.3 44 167-210 65-108 (531)
231 KOG1644 U2-associated snRNP A' 96.5 0.0038 8.3E-08 58.7 4.8 88 696-784 61-154 (233)
232 TIGR02237 recomb_radB DNA repa 96.5 0.0091 2E-07 59.2 8.0 47 188-238 12-58 (209)
233 TIGR03346 chaperone_ClpB ATP-d 96.5 0.019 4.1E-07 69.3 12.0 44 167-210 565-617 (852)
234 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.014 3E-07 59.1 9.4 50 188-237 19-71 (235)
235 COG2812 DnaX DNA polymerase II 96.4 0.018 3.8E-07 63.6 10.5 182 167-360 16-215 (515)
236 COG1484 DnaC DNA replication p 96.4 0.0069 1.5E-07 61.6 6.9 75 187-282 104-178 (254)
237 KOG2739 Leucine-rich acidic nu 96.4 0.0023 5E-08 62.8 3.0 59 650-710 42-102 (260)
238 KOG1644 U2-associated snRNP A' 96.4 0.0044 9.5E-08 58.3 4.6 79 576-662 43-124 (233)
239 PHA02244 ATPase-like protein 96.4 0.026 5.7E-07 59.4 10.8 46 163-210 92-141 (383)
240 KOG0735 AAA+-type ATPase [Post 96.4 0.019 4.1E-07 64.0 10.0 152 188-363 431-614 (952)
241 COG1875 NYN ribonuclease and A 96.4 0.016 3.4E-07 59.7 8.7 134 171-305 228-386 (436)
242 COG1618 Predicted nucleotide k 96.3 0.0039 8.4E-08 56.4 3.8 35 189-225 6-41 (179)
243 TIGR02236 recomb_radA DNA repa 96.3 0.018 3.9E-07 61.0 9.4 57 188-245 95-154 (310)
244 TIGR01243 CDC48 AAA family ATP 96.3 0.015 3.2E-07 69.2 9.7 43 168-210 179-234 (733)
245 PRK09361 radB DNA repair and r 96.3 0.017 3.6E-07 58.1 8.7 45 188-236 23-67 (225)
246 PRK08939 primosomal protein Dn 96.3 0.028 6.1E-07 58.8 10.6 114 171-306 135-260 (306)
247 PRK08699 DNA polymerase III su 96.3 0.033 7.2E-07 58.8 11.1 82 269-361 111-202 (325)
248 PRK06696 uridine kinase; Valid 96.2 0.005 1.1E-07 61.6 4.6 39 172-210 3-44 (223)
249 cd01393 recA_like RecA is a b 96.2 0.02 4.4E-07 57.5 9.0 48 188-237 19-71 (226)
250 TIGR02639 ClpA ATP-dependent C 96.2 0.017 3.7E-07 68.5 9.6 106 167-286 454-568 (731)
251 KOG0741 AAA+-type ATPase [Post 96.2 0.061 1.3E-06 58.0 12.4 139 188-355 538-704 (744)
252 KOG1969 DNA replication checkp 96.2 0.019 4.1E-07 64.2 8.8 75 188-284 326-400 (877)
253 TIGR02238 recomb_DMC1 meiotic 96.2 0.024 5.3E-07 59.4 9.4 59 188-247 96-157 (313)
254 TIGR01243 CDC48 AAA family ATP 96.1 0.067 1.4E-06 63.8 14.2 164 167-359 453-657 (733)
255 KOG0743 AAA+-type ATPase [Post 96.1 0.47 1E-05 50.8 18.5 146 189-372 236-417 (457)
256 COG2607 Predicted ATPase (AAA+ 96.1 0.11 2.3E-06 50.7 12.3 52 167-220 60-115 (287)
257 PRK05541 adenylylsulfate kinas 96.1 0.02 4.4E-07 54.9 7.8 36 187-225 6-41 (176)
258 PRK15455 PrkA family serine pr 96.1 0.0054 1.2E-07 67.7 4.1 43 168-210 77-125 (644)
259 cd01394 radB RadB. The archaea 96.1 0.021 4.5E-07 57.0 8.1 42 188-232 19-60 (218)
260 KOG0734 AAA+-type ATPase conta 96.1 0.0071 1.5E-07 64.9 4.7 44 168-211 305-360 (752)
261 PF14532 Sigma54_activ_2: Sigm 96.1 0.013 2.9E-07 53.6 6.1 42 170-211 1-44 (138)
262 PRK00771 signal recognition pa 96.0 0.026 5.7E-07 61.7 9.2 90 187-280 94-184 (437)
263 TIGR02012 tigrfam_recA protein 96.0 0.019 4.2E-07 59.9 7.8 84 188-281 55-143 (321)
264 PF13604 AAA_30: AAA domain; P 95.9 0.04 8.6E-07 53.8 9.1 110 177-304 7-128 (196)
265 KOG4341 F-box protein containi 95.9 0.0012 2.7E-08 68.6 -1.6 205 569-777 236-459 (483)
266 PRK07952 DNA replication prote 95.9 0.038 8.2E-07 55.6 8.9 48 188-244 99-146 (244)
267 cd03115 SRP The signal recogni 95.9 0.018 4E-07 55.1 6.4 35 190-227 2-36 (173)
268 KOG2739 Leucine-rich acidic nu 95.9 0.0066 1.4E-07 59.7 3.2 107 667-776 35-149 (260)
269 PLN03187 meiotic recombination 95.8 0.04 8.6E-07 58.3 9.3 59 188-247 126-187 (344)
270 KOG0728 26S proteasome regulat 95.8 0.099 2.2E-06 50.8 10.9 144 165-333 144-331 (404)
271 KOG0738 AAA+-type ATPase [Post 95.8 0.22 4.8E-06 51.9 14.0 43 168-210 213-267 (491)
272 KOG0731 AAA+-type ATPase conta 95.8 0.1 2.2E-06 59.9 12.9 167 167-361 311-520 (774)
273 cd00983 recA RecA is a bacter 95.8 0.018 3.9E-07 60.1 6.6 83 188-280 55-142 (325)
274 COG0542 clpA ATP-binding subun 95.8 0.031 6.7E-07 64.4 8.9 148 167-333 170-346 (786)
275 PRK09354 recA recombinase A; P 95.8 0.029 6.3E-07 59.1 8.0 84 188-281 60-148 (349)
276 PRK06547 hypothetical protein; 95.8 0.013 2.9E-07 55.6 4.9 33 178-210 5-37 (172)
277 PRK14722 flhF flagellar biosyn 95.8 0.045 9.7E-07 58.4 9.3 87 188-281 137-225 (374)
278 PRK09270 nucleoside triphospha 95.7 0.051 1.1E-06 54.6 9.3 25 186-210 31-55 (229)
279 PRK06835 DNA replication prote 95.7 0.04 8.7E-07 58.1 8.8 37 188-227 183-219 (329)
280 PRK10867 signal recognition pa 95.7 0.025 5.4E-07 61.8 7.4 24 187-210 99-122 (433)
281 PRK11889 flhF flagellar biosyn 95.7 0.08 1.7E-06 56.3 10.7 23 188-210 241-263 (436)
282 KOG0744 AAA+-type ATPase [Post 95.7 0.038 8.3E-07 55.9 7.9 82 188-281 177-260 (423)
283 TIGR03499 FlhF flagellar biosy 95.7 0.064 1.4E-06 55.7 10.0 87 187-280 193-281 (282)
284 PRK07667 uridine kinase; Provi 95.6 0.016 3.5E-07 56.5 5.0 35 176-210 3-39 (193)
285 COG1419 FlhF Flagellar GTP-bin 95.6 0.064 1.4E-06 56.8 9.6 86 188-280 203-290 (407)
286 COG0563 Adk Adenylate kinase a 95.6 0.025 5.4E-07 54.0 6.0 22 190-211 2-23 (178)
287 TIGR00959 ffh signal recogniti 95.6 0.031 6.8E-07 61.0 7.5 24 187-210 98-121 (428)
288 PRK11034 clpA ATP-dependent Cl 95.6 0.038 8.2E-07 65.0 8.6 106 167-286 458-572 (758)
289 cd01122 GP4d_helicase GP4d_hel 95.6 0.095 2.1E-06 54.3 10.9 52 188-243 30-81 (271)
290 PLN03186 DNA repair protein RA 95.6 0.07 1.5E-06 56.5 9.8 59 188-247 123-184 (342)
291 COG0468 RecA RecA/RadA recombi 95.5 0.083 1.8E-06 53.9 9.9 90 188-280 60-150 (279)
292 PRK04301 radA DNA repair and r 95.5 0.068 1.5E-06 56.7 9.8 57 188-245 102-161 (317)
293 cd00561 CobA_CobO_BtuR ATP:cor 95.5 0.084 1.8E-06 49.0 9.0 116 189-307 3-138 (159)
294 cd01120 RecA-like_NTPases RecA 95.5 0.064 1.4E-06 50.4 8.7 40 190-232 1-40 (165)
295 cd03247 ABCC_cytochrome_bd The 95.5 0.08 1.7E-06 50.9 9.2 23 188-210 28-50 (178)
296 TIGR01360 aden_kin_iso1 adenyl 95.4 0.016 3.5E-07 56.2 4.4 24 187-210 2-25 (188)
297 cd03214 ABC_Iron-Siderophores_ 95.4 0.12 2.5E-06 49.9 10.2 113 188-307 25-158 (180)
298 TIGR01425 SRP54_euk signal rec 95.4 0.23 5E-06 54.0 13.4 24 187-210 99-122 (429)
299 PF08423 Rad51: Rad51; InterP 95.4 0.053 1.1E-06 55.3 8.0 57 188-245 38-97 (256)
300 PF13238 AAA_18: AAA domain; P 95.4 0.011 2.5E-07 53.1 2.9 20 191-210 1-20 (129)
301 TIGR02239 recomb_RAD51 DNA rep 95.4 0.076 1.6E-06 55.9 9.3 58 188-246 96-156 (316)
302 PTZ00035 Rad51 protein; Provis 95.4 0.095 2.1E-06 55.7 10.1 58 188-246 118-178 (337)
303 KOG2982 Uncharacterized conser 95.4 0.0044 9.6E-08 61.6 0.0 138 653-790 47-193 (418)
304 PRK14974 cell division protein 95.3 0.045 9.8E-07 57.7 7.5 91 187-283 139-234 (336)
305 PRK08533 flagellar accessory p 95.3 0.18 3.8E-06 50.6 11.4 48 188-240 24-71 (230)
306 COG1428 Deoxynucleoside kinase 95.3 0.028 6E-07 53.8 5.2 49 188-242 4-52 (216)
307 KOG0729 26S proteasome regulat 95.3 0.052 1.1E-06 53.1 7.0 87 170-281 180-280 (435)
308 PRK07132 DNA polymerase III su 95.3 1.1 2.3E-05 46.7 17.3 157 177-364 6-184 (299)
309 PF01583 APS_kinase: Adenylyls 95.2 0.03 6.5E-07 51.7 5.1 37 188-227 2-38 (156)
310 cd02025 PanK Pantothenate kina 95.2 0.065 1.4E-06 53.3 7.9 40 190-231 1-41 (220)
311 PF00485 PRK: Phosphoribulokin 95.2 0.014 3.1E-07 57.0 3.1 21 190-210 1-21 (194)
312 PF13481 AAA_25: AAA domain; P 95.2 0.11 2.5E-06 50.5 9.6 42 189-230 33-81 (193)
313 cd02019 NK Nucleoside/nucleoti 95.2 0.015 3.3E-07 45.8 2.6 21 190-210 1-21 (69)
314 KOG0733 Nuclear AAA ATPase (VC 95.2 0.23 5E-06 54.8 12.1 123 188-335 545-694 (802)
315 COG4608 AppF ABC-type oligopep 95.1 0.088 1.9E-06 52.7 8.4 87 187-280 38-136 (268)
316 PRK05022 anaerobic nitric oxid 95.1 0.28 6E-06 55.8 13.6 45 166-210 186-232 (509)
317 PTZ00301 uridine kinase; Provi 95.1 0.033 7.1E-07 54.8 5.4 29 188-218 3-31 (210)
318 cd03238 ABC_UvrA The excision 95.1 0.11 2.3E-06 49.6 8.7 23 188-210 21-43 (176)
319 PRK08233 hypothetical protein; 95.1 0.018 3.9E-07 55.6 3.5 23 188-210 3-25 (182)
320 PF10236 DAP3: Mitochondrial r 95.1 0.37 8E-06 50.7 13.4 49 314-362 258-306 (309)
321 cd03281 ABC_MSH5_euk MutS5 hom 95.0 0.044 9.6E-07 54.2 6.0 23 188-210 29-51 (213)
322 PRK05480 uridine/cytidine kina 95.0 0.021 4.6E-07 56.6 3.7 25 186-210 4-28 (209)
323 PF07693 KAP_NTPase: KAP famil 95.0 0.14 3.1E-06 54.6 10.4 42 174-217 3-47 (325)
324 cd03223 ABCD_peroxisomal_ALDP 95.0 0.23 4.9E-06 47.1 10.4 23 188-210 27-49 (166)
325 TIGR00235 udk uridine kinase. 94.9 0.022 4.8E-07 56.3 3.6 24 187-210 5-28 (207)
326 PF08433 KTI12: Chromatin asso 94.9 0.046 1E-06 56.0 6.0 22 189-210 2-23 (270)
327 PF13671 AAA_33: AAA domain; P 94.9 0.02 4.4E-07 52.7 3.1 21 190-210 1-21 (143)
328 TIGR02974 phageshock_pspF psp 94.9 0.14 3E-06 54.5 9.8 42 169-210 1-44 (329)
329 cd03222 ABC_RNaseL_inhibitor T 94.9 0.23 5E-06 47.4 10.3 24 187-210 24-47 (177)
330 TIGR00064 ftsY signal recognit 94.9 0.069 1.5E-06 54.9 7.2 39 187-228 71-109 (272)
331 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.9 0.18 3.9E-06 46.5 9.3 23 188-210 26-48 (144)
332 PRK06762 hypothetical protein; 94.9 0.022 4.8E-07 54.0 3.4 23 188-210 2-24 (166)
333 TIGR03877 thermo_KaiC_1 KaiC d 94.9 0.19 4.2E-06 50.8 10.3 48 188-240 21-68 (237)
334 cd01131 PilT Pilus retraction 94.9 0.082 1.8E-06 51.7 7.4 22 189-210 2-23 (198)
335 KOG0739 AAA+-type ATPase [Post 94.9 0.41 8.9E-06 48.0 11.9 91 167-281 133-235 (439)
336 KOG0924 mRNA splicing factor A 94.9 0.11 2.4E-06 57.6 8.7 121 178-306 363-509 (1042)
337 KOG2123 Uncharacterized conser 94.9 0.0019 4.1E-08 63.5 -4.0 99 622-729 18-123 (388)
338 TIGR01817 nifA Nif-specific re 94.8 0.31 6.7E-06 55.9 13.0 45 166-210 195-241 (534)
339 PRK11608 pspF phage shock prot 94.8 0.11 2.4E-06 55.2 8.7 44 167-210 6-51 (326)
340 PF12775 AAA_7: P-loop contain 94.8 0.024 5.1E-07 58.3 3.5 33 177-210 23-55 (272)
341 cd03283 ABC_MutS-like MutS-lik 94.8 0.23 5E-06 48.6 10.2 22 189-210 26-47 (199)
342 cd00544 CobU Adenosylcobinamid 94.8 0.11 2.3E-06 49.2 7.6 82 190-280 1-82 (169)
343 cd03228 ABCC_MRP_Like The MRP 94.8 0.17 3.6E-06 48.3 9.1 24 187-210 27-50 (171)
344 PRK03839 putative kinase; Prov 94.8 0.023 5.1E-07 54.7 3.2 21 190-210 2-22 (180)
345 COG0541 Ffh Signal recognition 94.7 0.61 1.3E-05 49.8 13.5 116 188-307 100-251 (451)
346 TIGR00390 hslU ATP-dependent p 94.7 0.067 1.5E-06 57.3 6.5 44 167-210 12-69 (441)
347 PRK14527 adenylate kinase; Pro 94.7 0.058 1.2E-06 52.5 5.7 24 187-210 5-28 (191)
348 PTZ00088 adenylate kinase 1; P 94.6 0.063 1.4E-06 53.6 5.9 20 191-210 9-28 (229)
349 COG3640 CooC CO dehydrogenase 94.6 0.058 1.3E-06 52.4 5.3 43 190-234 2-44 (255)
350 cd03216 ABC_Carb_Monos_I This 94.6 0.11 2.4E-06 49.0 7.3 109 188-307 26-142 (163)
351 KOG0730 AAA+-type ATPase [Post 94.6 0.32 6.9E-06 54.4 11.6 24 187-210 467-490 (693)
352 PF00158 Sigma54_activat: Sigm 94.6 0.13 2.9E-06 48.6 7.8 42 169-210 1-44 (168)
353 PRK10463 hydrogenase nickel in 94.6 0.05 1.1E-06 55.7 5.2 36 182-219 98-133 (290)
354 PRK00625 shikimate kinase; Pro 94.6 0.027 5.9E-07 53.5 3.0 21 190-210 2-22 (173)
355 PRK12723 flagellar biosynthesi 94.6 0.15 3.2E-06 55.1 8.9 89 187-281 173-264 (388)
356 PRK04040 adenylate kinase; Pro 94.5 0.029 6.4E-07 54.2 3.3 23 188-210 2-24 (188)
357 PRK05342 clpX ATP-dependent pr 94.5 0.063 1.4E-06 58.5 6.1 44 167-210 71-130 (412)
358 COG0572 Udk Uridine kinase [Nu 94.5 0.034 7.4E-07 53.9 3.5 24 187-210 7-30 (218)
359 TIGR00554 panK_bact pantothena 94.5 0.12 2.5E-06 53.5 7.5 24 187-210 61-84 (290)
360 PF00910 RNA_helicase: RNA hel 94.4 0.024 5.2E-07 49.2 2.2 20 191-210 1-20 (107)
361 PRK12726 flagellar biosynthesi 94.4 0.23 5E-06 52.6 9.7 88 187-281 205-295 (407)
362 PRK15429 formate hydrogenlyase 94.4 0.19 4.1E-06 59.6 10.3 43 168-210 377-421 (686)
363 PRK06067 flagellar accessory p 94.4 0.15 3.3E-06 51.4 8.3 48 188-240 25-72 (234)
364 PRK05703 flhF flagellar biosyn 94.4 0.17 3.6E-06 55.7 9.1 85 188-280 221-308 (424)
365 PF07726 AAA_3: ATPase family 94.4 0.021 4.5E-07 50.3 1.6 27 191-219 2-28 (131)
366 KOG0736 Peroxisome assembly fa 94.4 0.41 8.9E-06 54.4 11.9 91 167-282 672-775 (953)
367 TIGR00708 cobA cob(I)alamin ad 94.4 0.3 6.6E-06 45.9 9.4 117 188-307 5-140 (173)
368 COG4618 ArpD ABC-type protease 94.4 0.32 7E-06 52.7 10.7 23 188-210 362-384 (580)
369 PF06745 KaiC: KaiC; InterPro 94.3 0.059 1.3E-06 54.1 5.0 48 188-239 19-66 (226)
370 PF00154 RecA: recA bacterial 94.3 0.07 1.5E-06 55.6 5.6 84 188-281 53-141 (322)
371 PF00560 LRR_1: Leucine Rich R 94.3 0.014 3.1E-07 34.0 0.3 20 749-768 2-21 (22)
372 PRK06002 fliI flagellum-specif 94.3 0.13 2.7E-06 56.1 7.7 88 188-280 165-263 (450)
373 COG1121 ZnuC ABC-type Mn/Zn tr 94.3 0.39 8.4E-06 48.1 10.5 23 188-210 30-52 (254)
374 TIGR03881 KaiC_arch_4 KaiC dom 94.3 0.22 4.7E-06 50.1 9.1 39 188-229 20-58 (229)
375 PRK12727 flagellar biosynthesi 94.2 0.19 4.1E-06 55.7 8.9 86 188-281 350-438 (559)
376 cd03282 ABC_MSH4_euk MutS4 hom 94.2 0.12 2.6E-06 50.7 6.7 111 188-307 29-151 (204)
377 COG0464 SpoVK ATPases of the A 94.2 0.3 6.6E-06 55.4 11.0 123 188-335 276-425 (494)
378 cd01135 V_A-ATPase_B V/A-type 94.2 0.15 3.2E-06 51.8 7.4 93 188-281 69-176 (276)
379 TIGR01650 PD_CobS cobaltochela 94.2 0.12 2.6E-06 53.9 6.9 67 163-237 41-107 (327)
380 cd03246 ABCC_Protease_Secretio 94.2 0.18 4E-06 48.1 7.9 23 188-210 28-50 (173)
381 PF03308 ArgK: ArgK protein; 94.1 0.083 1.8E-06 52.5 5.4 61 175-237 14-77 (266)
382 PRK05201 hslU ATP-dependent pr 94.1 0.1 2.2E-06 56.0 6.4 45 166-210 14-72 (443)
383 TIGR00150 HI0065_YjeE ATPase, 94.1 0.069 1.5E-06 47.9 4.4 37 175-211 7-45 (133)
384 PRK05800 cobU adenosylcobinami 94.1 0.11 2.5E-06 49.2 6.2 83 190-280 3-85 (170)
385 PRK00131 aroK shikimate kinase 94.1 0.043 9.2E-07 52.5 3.4 23 188-210 4-26 (175)
386 PRK12597 F0F1 ATP synthase sub 94.1 0.13 2.9E-06 56.3 7.5 92 188-281 143-247 (461)
387 PRK09280 F0F1 ATP synthase sub 94.1 0.2 4.4E-06 54.8 8.7 91 188-280 144-247 (463)
388 cd02023 UMPK Uridine monophosp 94.1 0.034 7.3E-07 54.6 2.6 21 190-210 1-21 (198)
389 PRK05439 pantothenate kinase; 94.1 0.33 7.2E-06 50.6 9.9 44 187-232 85-129 (311)
390 TIGR03878 thermo_KaiC_2 KaiC d 94.1 0.33 7.1E-06 49.7 9.9 39 188-229 36-74 (259)
391 TIGR02322 phosphon_PhnN phosph 94.1 0.041 8.9E-07 53.0 3.2 22 189-210 2-23 (179)
392 PRK06995 flhF flagellar biosyn 94.0 0.26 5.6E-06 54.5 9.6 87 188-281 256-344 (484)
393 PRK14532 adenylate kinase; Pro 94.0 0.21 4.6E-06 48.4 8.2 20 191-210 3-22 (188)
394 PF03193 DUF258: Protein of un 94.0 0.074 1.6E-06 49.4 4.6 35 174-211 24-58 (161)
395 PF08298 AAA_PrkA: PrkA AAA do 94.0 0.083 1.8E-06 55.1 5.4 45 166-210 60-110 (358)
396 cd02024 NRK1 Nicotinamide ribo 94.0 0.036 7.8E-07 53.3 2.6 21 190-210 1-21 (187)
397 TIGR01359 UMP_CMP_kin_fam UMP- 94.0 0.035 7.7E-07 53.6 2.6 21 190-210 1-21 (183)
398 PF12061 DUF3542: Protein of u 94.0 0.08 1.7E-06 53.1 4.9 78 9-86 296-374 (402)
399 PRK07276 DNA polymerase III su 94.0 2.4 5.3E-05 43.8 15.9 62 268-330 101-172 (290)
400 PRK13947 shikimate kinase; Pro 93.9 0.042 9.2E-07 52.4 3.0 21 190-210 3-23 (171)
401 PF07724 AAA_2: AAA domain (Cd 93.9 0.019 4.1E-07 54.5 0.5 42 188-232 3-45 (171)
402 cd03230 ABC_DR_subfamily_A Thi 93.9 0.16 3.4E-06 48.6 6.8 23 188-210 26-48 (173)
403 PRK12724 flagellar biosynthesi 93.9 0.15 3.3E-06 54.9 7.2 23 188-210 223-245 (432)
404 COG0003 ArsA Predicted ATPase 93.9 0.1 2.3E-06 54.5 5.9 49 188-239 2-50 (322)
405 PF05970 PIF1: PIF1-like helic 93.9 0.11 2.4E-06 56.1 6.4 35 176-210 10-44 (364)
406 PRK06217 hypothetical protein; 93.9 0.044 9.4E-07 53.0 2.9 21 190-210 3-23 (183)
407 KOG2123 Uncharacterized conser 93.8 0.0053 1.2E-07 60.5 -3.4 100 574-681 18-123 (388)
408 PRK00889 adenylylsulfate kinas 93.8 0.057 1.2E-06 51.8 3.7 24 187-210 3-26 (175)
409 cd01121 Sms Sms (bacterial rad 93.8 0.18 3.8E-06 54.4 7.7 85 188-280 82-167 (372)
410 KOG3347 Predicted nucleotide k 93.8 0.05 1.1E-06 48.6 2.8 39 188-234 7-45 (176)
411 PF13245 AAA_19: Part of AAA d 93.8 0.1 2.3E-06 41.8 4.5 24 187-210 9-33 (76)
412 PRK14528 adenylate kinase; Pro 93.8 0.12 2.7E-06 49.9 5.9 22 189-210 2-23 (186)
413 COG0488 Uup ATPase components 93.8 0.21 4.6E-06 56.1 8.5 23 188-210 348-370 (530)
414 cd00227 CPT Chloramphenicol (C 93.7 0.049 1.1E-06 52.2 3.0 22 189-210 3-24 (175)
415 KOG1051 Chaperone HSP104 and r 93.7 0.5 1.1E-05 55.7 11.6 105 167-286 562-675 (898)
416 KOG3864 Uncharacterized conser 93.7 0.017 3.8E-07 54.5 -0.1 118 666-801 92-212 (221)
417 PRK12678 transcription termina 93.7 0.12 2.6E-06 57.3 6.1 98 179-280 406-512 (672)
418 cd00984 DnaB_C DnaB helicase C 93.6 0.5 1.1E-05 47.9 10.4 52 188-243 13-64 (242)
419 PF06309 Torsin: Torsin; Inte 93.6 0.1 2.2E-06 45.9 4.4 44 168-211 26-76 (127)
420 COG1936 Predicted nucleotide k 93.6 0.051 1.1E-06 50.2 2.7 20 190-209 2-21 (180)
421 cd02021 GntK Gluconate kinase 93.6 0.047 1E-06 50.8 2.6 21 190-210 1-21 (150)
422 TIGR01039 atpD ATP synthase, F 93.6 0.4 8.6E-06 52.4 9.8 92 188-281 143-247 (461)
423 PF03205 MobB: Molybdopterin g 93.6 0.06 1.3E-06 49.2 3.1 38 189-229 1-39 (140)
424 cd02028 UMPK_like Uridine mono 93.6 0.049 1.1E-06 52.3 2.7 21 190-210 1-21 (179)
425 PRK00279 adk adenylate kinase; 93.6 0.12 2.6E-06 51.4 5.5 21 190-210 2-22 (215)
426 COG2884 FtsE Predicted ATPase 93.6 0.55 1.2E-05 44.2 9.2 24 188-211 28-51 (223)
427 PRK13949 shikimate kinase; Pro 93.5 0.056 1.2E-06 51.3 3.0 21 190-210 3-23 (169)
428 COG1102 Cmk Cytidylate kinase 93.5 0.053 1.2E-06 49.3 2.6 44 190-247 2-45 (179)
429 COG0714 MoxR-like ATPases [Gen 93.5 0.13 2.8E-06 54.9 6.1 63 169-239 26-88 (329)
430 COG2019 AdkA Archaeal adenylat 93.5 0.065 1.4E-06 49.0 3.1 23 188-210 4-26 (189)
431 PF00006 ATP-synt_ab: ATP synt 93.5 0.13 2.7E-06 50.7 5.4 86 189-280 16-114 (215)
432 TIGR03263 guanyl_kin guanylate 93.5 0.057 1.2E-06 52.0 3.0 22 189-210 2-23 (180)
433 TIGR02858 spore_III_AA stage I 93.4 0.53 1.2E-05 48.2 10.1 35 176-210 98-133 (270)
434 PRK09519 recA DNA recombinatio 93.4 0.28 6E-06 57.3 8.9 84 188-281 60-148 (790)
435 PRK10751 molybdopterin-guanine 93.4 0.068 1.5E-06 50.4 3.2 24 187-210 5-28 (173)
436 cd02020 CMPK Cytidine monophos 93.4 0.055 1.2E-06 50.0 2.6 21 190-210 1-21 (147)
437 smart00534 MUTSac ATPase domai 93.4 0.063 1.4E-06 51.9 3.1 21 190-210 1-21 (185)
438 COG0055 AtpD F0F1-type ATP syn 93.4 0.2 4.4E-06 51.8 6.7 93 188-282 147-252 (468)
439 TIGR01351 adk adenylate kinase 93.3 0.11 2.4E-06 51.4 4.9 20 191-210 2-21 (210)
440 TIGR00073 hypB hydrogenase acc 93.3 0.088 1.9E-06 52.0 4.1 30 181-210 15-44 (207)
441 PRK14721 flhF flagellar biosyn 93.3 0.5 1.1E-05 51.4 10.1 23 188-210 191-213 (420)
442 COG1124 DppF ABC-type dipeptid 93.3 0.067 1.4E-06 52.4 3.0 23 188-210 33-55 (252)
443 PRK08927 fliI flagellum-specif 93.3 0.24 5.1E-06 54.0 7.5 88 187-280 157-257 (442)
444 cd01132 F1_ATPase_alpha F1 ATP 93.3 0.29 6.4E-06 49.6 7.7 89 188-281 69-171 (274)
445 PRK08972 fliI flagellum-specif 93.3 0.25 5.4E-06 53.7 7.7 88 188-281 162-262 (444)
446 PRK13948 shikimate kinase; Pro 93.2 0.075 1.6E-06 50.9 3.3 24 187-210 9-32 (182)
447 PRK04328 hypothetical protein; 93.2 0.32 7E-06 49.5 8.2 52 188-245 23-74 (249)
448 cd00071 GMPK Guanosine monopho 93.2 0.064 1.4E-06 48.9 2.7 21 190-210 1-21 (137)
449 PHA02774 E1; Provisional 93.2 0.26 5.6E-06 55.0 7.8 35 176-210 421-456 (613)
450 PF08477 Miro: Miro-like prote 93.2 0.074 1.6E-06 47.0 3.1 22 191-212 2-23 (119)
451 PRK10733 hflB ATP-dependent me 93.2 0.67 1.5E-05 54.1 11.7 43 168-210 153-207 (644)
452 PF02374 ArsA_ATPase: Anion-tr 93.2 0.12 2.5E-06 54.2 5.0 44 189-235 2-45 (305)
453 COG0378 HypB Ni2+-binding GTPa 93.1 0.29 6.2E-06 46.4 6.8 49 188-238 13-61 (202)
454 PF12780 AAA_8: P-loop contain 93.1 0.24 5.1E-06 50.7 6.9 94 170-291 11-109 (268)
455 COG0465 HflB ATP-dependent Zn 93.1 0.061 1.3E-06 60.3 2.8 48 167-214 150-209 (596)
456 PRK12339 2-phosphoglycerate ki 93.1 0.084 1.8E-06 51.3 3.5 23 188-210 3-25 (197)
457 PRK09099 type III secretion sy 93.1 0.26 5.6E-06 54.0 7.5 90 187-281 162-263 (441)
458 PRK14723 flhF flagellar biosyn 93.1 0.54 1.2E-05 54.8 10.4 58 188-247 185-244 (767)
459 PRK09302 circadian clock prote 93.1 0.54 1.2E-05 53.6 10.6 50 187-240 30-79 (509)
460 PRK05917 DNA polymerase III su 93.1 2.5 5.4E-05 43.6 14.2 110 176-307 6-135 (290)
461 PRK14530 adenylate kinase; Pro 93.1 0.071 1.5E-06 53.0 3.0 22 189-210 4-25 (215)
462 PRK10820 DNA-binding transcrip 93.1 0.35 7.6E-06 55.0 8.9 44 167-210 204-249 (520)
463 PRK03846 adenylylsulfate kinas 93.1 0.089 1.9E-06 51.5 3.7 25 186-210 22-46 (198)
464 TIGR00764 lon_rel lon-related 93.0 0.21 4.5E-06 57.7 7.1 73 167-245 18-91 (608)
465 PRK00409 recombination and DNA 93.0 0.62 1.3E-05 55.5 11.2 173 186-384 325-525 (782)
466 PRK14529 adenylate kinase; Pro 93.0 0.3 6.5E-06 48.4 7.3 20 191-210 3-22 (223)
467 PRK10078 ribose 1,5-bisphospho 93.0 0.077 1.7E-06 51.4 3.1 22 189-210 3-24 (186)
468 COG0467 RAD55 RecA-superfamily 93.0 0.15 3.2E-06 52.5 5.4 53 187-245 22-74 (260)
469 KOG1947 Leucine rich repeat pr 93.0 0.016 3.5E-07 65.7 -1.9 186 574-772 187-389 (482)
470 COG0529 CysC Adenylylsulfate k 93.0 0.19 4E-06 46.7 5.3 34 182-217 17-50 (197)
471 TIGR03305 alt_F1F0_F1_bet alte 93.0 0.27 5.8E-06 53.7 7.5 92 188-281 138-242 (449)
472 cd01136 ATPase_flagellum-secre 93.0 0.48 1E-05 49.8 9.1 88 188-281 69-169 (326)
473 PRK00300 gmk guanylate kinase; 93.0 0.074 1.6E-06 52.4 3.0 24 187-210 4-27 (205)
474 PRK10416 signal recognition pa 93.0 0.29 6.3E-06 51.5 7.5 38 187-227 113-150 (318)
475 PF03266 NTPase_1: NTPase; In 93.0 0.077 1.7E-06 50.2 2.9 20 191-210 2-21 (168)
476 cd00820 PEPCK_HprK Phosphoenol 93.0 0.094 2E-06 44.9 3.1 22 188-209 15-36 (107)
477 cd00464 SK Shikimate kinase (S 92.9 0.076 1.6E-06 49.6 2.9 20 191-210 2-21 (154)
478 TIGR02030 BchI-ChlI magnesium 92.9 0.1 2.2E-06 55.2 4.1 43 168-210 5-47 (337)
479 COG1066 Sms Predicted ATP-depe 92.9 0.38 8.3E-06 50.8 8.0 85 188-281 93-178 (456)
480 COG1703 ArgK Putative periplas 92.9 0.16 3.4E-06 51.3 5.1 62 177-239 38-101 (323)
481 cd03285 ABC_MSH2_euk MutS2 hom 92.9 0.083 1.8E-06 52.6 3.2 113 187-307 29-153 (222)
482 PRK05922 type III secretion sy 92.9 0.51 1.1E-05 51.4 9.3 89 187-281 156-257 (434)
483 cd03287 ABC_MSH3_euk MutS3 hom 92.9 0.71 1.5E-05 45.9 9.7 113 187-307 30-154 (222)
484 COG1224 TIP49 DNA helicase TIP 92.9 0.35 7.6E-06 49.9 7.5 46 165-210 37-87 (450)
485 PRK13946 shikimate kinase; Pro 92.8 0.083 1.8E-06 51.0 3.1 23 188-210 10-32 (184)
486 PLN02348 phosphoribulokinase 92.8 0.15 3.3E-06 54.2 5.2 25 186-210 47-71 (395)
487 KOG1970 Checkpoint RAD17-RFC c 92.8 0.64 1.4E-05 50.9 9.7 38 173-210 88-132 (634)
488 PRK13765 ATP-dependent proteas 92.8 0.18 3.8E-06 58.1 6.0 75 166-246 30-105 (637)
489 PRK13407 bchI magnesium chelat 92.8 0.097 2.1E-06 55.3 3.7 44 167-210 8-51 (334)
490 TIGR03498 FliI_clade3 flagella 92.8 0.27 5.8E-06 53.6 7.0 88 188-281 140-240 (418)
491 PRK13975 thymidylate kinase; P 92.8 0.091 2E-06 51.4 3.3 22 189-210 3-24 (196)
492 PTZ00185 ATPase alpha subunit; 92.8 0.51 1.1E-05 51.9 9.0 92 188-281 189-299 (574)
493 TIGR01313 therm_gnt_kin carboh 92.7 0.071 1.5E-06 50.4 2.4 20 191-210 1-20 (163)
494 PF00625 Guanylate_kin: Guanyl 92.7 0.1 2.3E-06 50.3 3.5 30 188-219 2-31 (183)
495 PRK14737 gmk guanylate kinase; 92.7 0.1 2.3E-06 50.3 3.5 24 187-210 3-26 (186)
496 PRK05057 aroK shikimate kinase 92.7 0.089 1.9E-06 50.1 3.0 23 188-210 4-26 (172)
497 COG0703 AroK Shikimate kinase 92.7 0.094 2E-06 49.0 3.0 28 189-218 3-30 (172)
498 cd02027 APSK Adenosine 5'-phos 92.7 0.082 1.8E-06 49.0 2.6 21 190-210 1-21 (149)
499 KOG0727 26S proteasome regulat 92.6 0.15 3.2E-06 49.7 4.2 44 168-211 156-212 (408)
500 KOG1532 GTPase XAB1, interacts 92.6 0.13 2.8E-06 50.8 3.9 58 188-248 19-87 (366)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-73 Score=656.32 Aligned_cols=628 Identities=20% Similarity=0.254 Sum_probs=463.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhHHHHHHHHHHhhHHHhhhccCc
Q 003515 8 GALLGAVFGELLRAVSEAKDKAVMFKDLLEQLESTLQNSTPMIKEIEKLNQVLDLPKHETDTLIEMMRRGEHLVHKCSRV 87 (814)
Q Consensus 8 ~a~~~~v~~kl~~~l~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~ae~~~~~~~~~~~wl~~l~~~~~d~ed~ld~~~~~ 87 (814)
++.++..++++.+.+.+++....+.++.+..|++.|..++++++||+.++........|...+++++|+++|.++.+..
T Consensus 2 ~~~~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v- 80 (889)
T KOG4658|consen 2 GACVSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLV- 80 (889)
T ss_pred CeEEEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3445566788888898999999999999999999999999999999999888777889999999999999999999876
Q ss_pred cccccccchhHHHHHHHHhhhhhhhhccchhhhhhhhhHHHHHHHHHHHHHhhcccccccccccc--c-ccccccCCCCC
Q 003515 88 KWNCFKRYDYAKKIIKLDRSIDTFFRTYIPLQQTRDNRVIMVDLKEVHMMVKRLSGNDRTSWMFN--Q-VGVAGACSAPD 164 (814)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~ 164 (814)
+..... ..+..........+..-....+....++..+..++-.+.+.++.+.....+..... . ...+...+ ..
T Consensus 81 --~~~~~~-~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~-~~ 156 (889)
T KOG4658|consen 81 --EEIERK-ANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRP-IQ 156 (889)
T ss_pred --HHHHHH-HhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCC-CC
Confidence 222111 11111111000111111134556667777778888888888888876553322221 1 11121111 12
Q ss_pred CCCCCCCccchhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchh-hhccCCCcEEEEEecCCCCHHHHHHHHHHH
Q 003515 165 PPPVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQ-VLGKFKDNIFFVTVSQTPNVKGIVQKVYQH 243 (814)
Q Consensus 165 ~~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~ 243 (814)
+... ||.+..++++.+.|..++..+++|+||||+||||||+.++|+.. ++.+|+. ++||.||+.++...++.+|++.
T Consensus 157 ~~~~-VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~-~iWV~VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 157 SESD-VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDG-VIWVVVSKEFTTRKIQQTILER 234 (889)
T ss_pred cccc-ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCce-EEEEEEcccccHHhHHHHHHHH
Confidence 2223 99999999999999988889999999999999999999999988 9999998 8899999999999999999999
Q ss_pred hCCCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCCchH--HHhhhcccCCCeEEEEEccccccC-----CCCcc
Q 003515 244 KGYAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSGSES--LLQKFKFQLPYYKILVTSRSVFPQ-----FGSGY 315 (814)
Q Consensus 244 l~~~~~~~~~~~~~~~~l~~~l-~~l~~kr~LlVlDdv~~~~~~--~~~~~~~~~~gs~iivTtR~~~~~-----~~~~~ 315 (814)
++...+...... .+.++..+ +.+++|||||||||||+..+| +..+++....||||++|||+..+. ....+
T Consensus 235 l~~~~~~~~~~~--~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~ 312 (889)
T KOG4658|consen 235 LGLLDEEWEDKE--EDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPI 312 (889)
T ss_pred hccCCcccchhh--HHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccc
Confidence 887544332221 14444444 566899999999999998764 444555566789999999998433 23479
Q ss_pred ccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHHHHHHhCCCC-hHHHHHHHHHHhcc-cc-ccC
Q 003515 316 DLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGGSLCGKH-PAIWQKRVKEWTQD-VS-VFH 392 (814)
Q Consensus 316 ~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~L~~~~-~~~w~~~l~~~~~~-~~-~~~ 392 (814)
+++.|+++|||+||++.+|.......+..+++|++|+++|+|+|||+.++|+.|+.+. ..+|+++...+... .. ..+
T Consensus 313 ~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~ 392 (889)
T KOG4658|consen 313 EVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSG 392 (889)
T ss_pred cccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCc
Confidence 9999999999999999998886555455799999999999999999999999999985 77999888876543 11 122
Q ss_pred ChHHHHHHHHHHHhhchHHHHHHHhHhCCCCCCcccCHHHHHHHHHHhhccchH-------HHHHHHHHhhhhhhhhhhh
Q 003515 393 SNKEILSCLERSLDALNNEVKECYMDLCSFPEDQRIPITALVDMWMELYELVDE-------LFAIANLHELSNLNLANCV 465 (814)
Q Consensus 393 ~~~~i~~~l~~sy~~L~~~~k~cf~~ls~fp~~~~i~~~~Li~~W~a~~~~~~~-------~~~~~~l~~L~~rsll~~~ 465 (814)
..+.++.++.+||+.||+++|.||+|||+||+||.|+++.|+.+|+|+|++++. ++|++|+.+|++++|++..
T Consensus 393 ~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~ 472 (889)
T KOG4658|consen 393 MEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEE 472 (889)
T ss_pred hhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhc
Confidence 357899999999999998899999999999999999999999999999988652 6899999999999999964
Q ss_pred hhcccCCCCCCccchhhhhhHHHHHHHHHhhccCCccccceeeeeCCCCCCchhhHhhcCCCcccceeeeccCCCccCCc
Q 003515 466 ATRKYASDDSCYNDHFVMQHDLLRELAIYQSTLEPIKQRKRLIIDTSGNNFPEWWMDQKQHPLNASLLSISTDETFSSNW 545 (814)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~mHdlv~d~a~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~Lsi~~~~~~~~~~ 545 (814)
.. .++..+|.|||+|||+|.+++++.....++.+ +..+.... + ..........|++++
T Consensus 473 ~~--------~~~~~~~kmHDvvRe~al~ias~~~~~~e~~i-v~~~~~~~-~--~~~~~~~~~~rr~s~---------- 530 (889)
T KOG4658|consen 473 RD--------EGRKETVKMHDVVREMALWIASDFGKQEENQI-VSDGVGLS-E--IPQVKSWNSVRRMSL---------- 530 (889)
T ss_pred cc--------ccceeEEEeeHHHHHHHHHHhccccccccceE-EECCcCcc-c--cccccchhheeEEEE----------
Confidence 32 13557899999999999999996555433311 22110000 0 000000112222222
Q ss_pred ccCCCCceEEEEEeccCCCCCCChhcCCCCCCcEEEeecccccCcccccccccCCCCCCCEEEecCCCCCCc-ccccccc
Q 003515 546 YDMEAPEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSL-TTVRMKH 624 (814)
Q Consensus 546 ~~~~~~~~~~l~l~~~~~~~~~p~~l~~l~~Lr~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~ 624 (814)
.+ |.+... .....+.
T Consensus 531 -------------------------------------~~---------------------------~~~~~~~~~~~~~~ 546 (889)
T KOG4658|consen 531 -------------------------------------MN---------------------------NKIEHIAGSSENPK 546 (889)
T ss_pred -------------------------------------ec---------------------------cchhhccCCCCCCc
Confidence 21 111111 1111234
Q ss_pred ccccceecccccccccCcccccccCCCCccEEecccCcCcCcCCccccCCCCccEEEeecCCCCCCCchhccCCCCcCEe
Q 003515 625 LQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQML 704 (814)
Q Consensus 625 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L 704 (814)
|++|-+.++.. ........++..+|.|++|||++|...+++|..|++|.+|+||+++++ .+..+|.++++|..|.+|
T Consensus 547 L~tLll~~n~~--~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 547 LRTLLLQRNSD--WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYL 623 (889)
T ss_pred cceEEEeecch--hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhhee
Confidence 44544444432 011122234457899999999999888999999999999999999984 477999999999999999
Q ss_pred ecccCCCCCCCccccCCCCCCCEEeccCC
Q 003515 705 TLASCTDLSALPDTIGNLSNLNFLDISEC 733 (814)
Q Consensus 705 ~L~~~~~~~~lp~~l~~L~~L~~L~l~~~ 733 (814)
++..+..+..+|..+..|++|++|.+..-
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccccccccccchhhhcccccEEEeecc
Confidence 99987777777777777899999987653
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.4e-54 Score=528.38 Aligned_cols=563 Identities=20% Similarity=0.282 Sum_probs=363.1
Q ss_pred CCCCCCCccchhHHHHHHHh--hCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEe---cCC---------
Q 003515 165 PPPVTPGLDVPLQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTV---SQT--------- 230 (814)
Q Consensus 165 ~~~~~vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v---~~~--------- 230 (814)
..+.+|||+..++++..+|. .++.++|+||||||+||||||+++|+ ++..+|+..+ |+.- +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~v-fv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSV-FIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEE-Eeeccccccchhhcccccc
Confidence 44578999999999998886 45689999999999999999999998 7888998744 5531 111
Q ss_pred --CC-HHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH--HHhhhcccCCCeEEEEEcc
Q 003515 231 --PN-VKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES--LLQKFKFQLPYYKILVTSR 305 (814)
Q Consensus 231 --~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~~~--~~~~~~~~~~gs~iivTtR 305 (814)
.. ...++.+++..+......... ....+++ .++++|+||||||||+...+ +.....+..+||+||||||
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~~~~~---~~~~~~~---~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTr 332 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKDIKIY---HLGAMEE---RLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITK 332 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCCcccC---CHHHHHH---HHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeC
Confidence 01 123344444443221111000 0122333 34899999999999875432 2222334568999999999
Q ss_pred cccc----CCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHHHHHHhCCCChHHHHHHH
Q 003515 306 SVFP----QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGGSLCGKHPAIWQKRV 381 (814)
Q Consensus 306 ~~~~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~L~~~~~~~w~~~l 381 (814)
+..+ ....+|+++.|++++||+||+++||+...+ +...++++++|+++|+|+|||++++|++|++++..+|+..+
T Consensus 333 d~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l 411 (1153)
T PLN03210 333 DKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDML 411 (1153)
T ss_pred cHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 9842 234589999999999999999999976542 33457899999999999999999999999999999999999
Q ss_pred HHHhccccccCChHHHHHHHHHHHhhchH-HHHHHHhHhCCCCCCcccCHHHHHHHHHHhhccchHHHHHHHHHhhhhhh
Q 003515 382 KEWTQDVSVFHSNKEILSCLERSLDALNN-EVKECYMDLCSFPEDQRIPITALVDMWMELYELVDELFAIANLHELSNLN 460 (814)
Q Consensus 382 ~~~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~cf~~ls~fp~~~~i~~~~Li~~W~a~~~~~~~~~~~~~l~~L~~rs 460 (814)
.++... .+.+|..+|++||+.|++ ..|.||+++|+||.+..++ .+..|.+.+..+. +..++.|++++
T Consensus 412 ~~L~~~-----~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----~~~l~~L~~ks 479 (1153)
T PLN03210 412 PRLRNG-----LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----NIGLKNLVDKS 479 (1153)
T ss_pred HHHHhC-----ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----hhChHHHHhcC
Confidence 987642 346899999999999987 4999999999999987553 4667877665543 34589999999
Q ss_pred hhhhhhhcccCCCCCCccchhhhhhHHHHHHHHHhhccCCc--cccceeeeeCCCCCCchhhHhhcCCCcccceeeeccC
Q 003515 461 LANCVATRKYASDDSCYNDHFVMQHDLLRELAIYQSTLEPI--KQRKRLIIDTSGNNFPEWWMDQKQHPLNASLLSISTD 538 (814)
Q Consensus 461 ll~~~~~~~~~~~~~~~~~~~~~mHdlv~d~a~~~~~~e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~Lsi~~~ 538 (814)
|++.. ...+.|||++|++|+.++..+.- ..+.+++-. . ++..-. ........++.+++...
T Consensus 480 Li~~~-------------~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~-~--di~~vl-~~~~g~~~v~~i~l~~~ 542 (1153)
T PLN03210 480 LIHVR-------------EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDA-K--DICDVL-EDNTGTKKVLGITLDID 542 (1153)
T ss_pred CEEEc-------------CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCH-H--HHHHHH-HhCcccceeeEEEeccC
Confidence 99852 13589999999999999876642 222333211 0 000000 00011122333332211
Q ss_pred CCccCCc---ccCCCCceEEEEEeccC------CCCCCChhcCCC-CCCcEEEeeccc--ccCcccccccccCCCCCCCE
Q 003515 539 ETFSSNW---YDMEAPEVKVVVLNVRT------KKYTLPKFLEKM-DKLKVMIVTNYG--FFPAELSNIQVFGALSNLKR 606 (814)
Q Consensus 539 ~~~~~~~---~~~~~~~~~~l~l~~~~------~~~~~p~~l~~l-~~Lr~L~l~~~~--~~~~~~~~l~~l~~l~~L~~ 606 (814)
....... .-.++++++.+.+.... ....+|..+..+ .+||.|.+.++. .+|.. -.+.+|+.
T Consensus 543 ~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~-------f~~~~L~~ 615 (1153)
T PLN03210 543 EIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN-------FRPENLVK 615 (1153)
T ss_pred ccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCc-------CCccCCcE
Confidence 1100000 00123344444332211 112344444443 245555555431 22322 13467777
Q ss_pred EEecCCCCCCc--cccccccccccceecccccccccCcccccccCCCCccEEecccCcCcCcCCccccCCCCccEEEeec
Q 003515 607 IRLEHVSLPSL--TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITN 684 (814)
Q Consensus 607 L~l~~n~l~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~ 684 (814)
|++.+|.+..+ ....+++|+.|+++++......+. ...+++|+.|+|++|.....+|..++++++|++|++++
T Consensus 616 L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~ 690 (1153)
T PLN03210 616 LQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR 690 (1153)
T ss_pred EECcCccccccccccccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence 88877777665 234567778888777643332222 22577888888888877778888888888888888888
Q ss_pred CCCCCCCchhccCCCCcCEeecccCCCCCCCccccCC-------------------------------------------
Q 003515 685 CHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGN------------------------------------------- 721 (814)
Q Consensus 685 ~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~------------------------------------------- 721 (814)
|..+..+|..+ ++++|++|++++|..++.+|....+
T Consensus 691 c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l 769 (1153)
T PLN03210 691 CENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPL 769 (1153)
T ss_pred CCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhcccccccc
Confidence 87777888765 6788888888887655544421100
Q ss_pred -------CCCCCEEeccCCCCCCccchhhcCCCCCCEEeccCCC-CCCcChhhhcCCCCCEEEcCCc
Q 003515 722 -------LSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCS-MFELPSSILNLENLEVVKCDEE 780 (814)
Q Consensus 722 -------L~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~-l~~lp~~l~~l~~L~~L~l~~~ 780 (814)
.++|+.|++++|.....+|..++++++|+.|++++|. ++.+|..+ ++++|+.|+++++
T Consensus 770 ~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c 835 (1153)
T PLN03210 770 TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGC 835 (1153)
T ss_pred chhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCC
Confidence 1245555555555555566666666666666666664 55565544 5666666666553
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.9e-41 Score=355.17 Aligned_cols=271 Identities=27% Similarity=0.471 Sum_probs=211.7
Q ss_pred ccchhHHHHHHHhh--CCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC
Q 003515 172 LDVPLQELKLELFK--DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVP 249 (814)
Q Consensus 172 r~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~ 249 (814)
||.++++|.+.|.. ++.++|+|+||||+||||||++++++.+++.+|+. ++|+.++...+..+++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~-v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDG-VIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTE-EEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccc-cccccccccccccccccccccccccccc
Confidence 78899999999997 77999999999999999999999997779999976 8999999999999999999999987744
Q ss_pred C---CCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH--HHhhhcccCCCeEEEEEccccccCC-----CCccccCC
Q 003515 250 E---FQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES--LLQKFKFQLPYYKILVTSRSVFPQF-----GSGYDLKP 319 (814)
Q Consensus 250 ~---~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~~~--~~~~~~~~~~gs~iivTtR~~~~~~-----~~~~~l~~ 319 (814)
. ..........+.+.+ +++++||||||||+...+ +...+.....|++||||||+..+.. ...+++++
T Consensus 80 ~~~~~~~~~~~~~~l~~~L---~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELL---KDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHH---CCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred ccccccccccccccchhhh---ccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3 233444555555554 788999999999987643 3344455567899999999974322 24799999
Q ss_pred CCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHHHHHHhCCC-ChHHHHHHHHHHhccccc-cCChHHH
Q 003515 320 LNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGGSLCGK-HPAIWQKRVKEWTQDVSV-FHSNKEI 397 (814)
Q Consensus 320 L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~L~~~-~~~~w~~~l~~~~~~~~~-~~~~~~i 397 (814)
|+.++|++||.+.++..........++.+++|+++|+|+|||++++|++|+.+ +..+|+..++++...... ......+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999776632334457899999999999999999999999654 578899888876654321 1246789
Q ss_pred HHHHHHHHhhchHHHHHHHhHhCCCCCCcccCHHHHHHHHHHhhccchH
Q 003515 398 LSCLERSLDALNNEVKECYMDLCSFPEDQRIPITALVDMWMELYELVDE 446 (814)
Q Consensus 398 ~~~l~~sy~~L~~~~k~cf~~ls~fp~~~~i~~~~Li~~W~a~~~~~~~ 446 (814)
..++.+||+.||+++|+||+|||+||+++.|+++.|+++|+++|++...
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999999999999999999999999999999999999999998753
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=1.8e-20 Score=230.64 Aligned_cols=231 Identities=18% Similarity=0.321 Sum_probs=153.4
Q ss_pred cCCcccCCCC---ceEEEEEeccCCCCCCChhcCCCCCCcEEEeecccc---cCcccccccccCCCCCCCEEEecCCCCC
Q 003515 542 SSNWYDMEAP---EVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGF---FPAELSNIQVFGALSNLKRIRLEHVSLP 615 (814)
Q Consensus 542 ~~~~~~~~~~---~~~~l~l~~~~~~~~~p~~l~~l~~Lr~L~l~~~~~---~~~~~~~l~~l~~l~~L~~L~l~~n~l~ 615 (814)
.|.|.|+.|. .+..+.+..+...+.+|..+..+++|++|++++|.+ +|..+ +..+++|++|+|++|.+.
T Consensus 57 ~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~-----~~~l~~L~~L~Ls~n~l~ 131 (968)
T PLN00113 57 VCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDI-----FTTSSSLRYLNLSNNNFT 131 (968)
T ss_pred CCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHH-----hccCCCCCEEECcCCccc
Confidence 5678888775 345555554455567788888999999999988643 44433 346778888888888776
Q ss_pred Cc-cccccccccccceecccccccccCcccccccCCCCccEEecccCcCcCcCCccccCCCCccEEEeecCCCCCCCchh
Q 003515 616 SL-TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEG 694 (814)
Q Consensus 616 ~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~ 694 (814)
+. +...+++|++|++++|.+....+.. +..+++|++|+|++|.+.+.+|..++++++|++|++++|.+.+.+|..
T Consensus 132 ~~~p~~~l~~L~~L~Ls~n~~~~~~p~~----~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 207 (968)
T PLN00113 132 GSIPRGSIPNLETLDLSNNMLSGEIPND----IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE 207 (968)
T ss_pred cccCccccCCCCEEECcCCcccccCChH----HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH
Confidence 54 3445677777777777655333221 235667777777777666667777777777777777776666666766
Q ss_pred ccCCCCcCEeecccCCCCCCCccccCCCCCCCEEeccCCCCCCccchhhcCCCCCCEEeccCCCCC-CcChhhhcCCCCC
Q 003515 695 IGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMF-ELPSSILNLENLE 773 (814)
Q Consensus 695 ~~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~ 773 (814)
++++++|++|++++|...+.+|..++++++|++|++++|...+.+|..++++++|++|++++|.++ .+|..+.++++|+
T Consensus 208 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 287 (968)
T PLN00113 208 LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLI 287 (968)
T ss_pred HcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcC
Confidence 777777777777766666666666666667777776666655566666666666666666666654 4555666666666
Q ss_pred EEEcCCch
Q 003515 774 VVKCDEET 781 (814)
Q Consensus 774 ~L~l~~~~ 781 (814)
.|+++++.
T Consensus 288 ~L~Ls~n~ 295 (968)
T PLN00113 288 SLDLSDNS 295 (968)
T ss_pred EEECcCCe
Confidence 66665543
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.78 E-value=9.7e-19 Score=215.39 Aligned_cols=181 Identities=23% Similarity=0.280 Sum_probs=111.6
Q ss_pred cCCCCCCCEEEecCCCCCCcc---ccccccccccceecccccccccCcccccccCCCCccEEecccCcCcCcCCccccCC
Q 003515 598 FGALSNLKRIRLEHVSLPSLT---TVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDI 674 (814)
Q Consensus 598 l~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l 674 (814)
++++++|++|++++|.+.+.. ...+++|++|++.+|.+....+.. +..+++|+.|+|++|.+.+.+|..++++
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~L~~n~l~~~~p~~l~~l 235 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE----LGQMKSLKWIYLGYNNLSGEIPYEIGGL 235 (968)
T ss_pred HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH----HcCcCCccEEECcCCccCCcCChhHhcC
Confidence 345556666666666554331 234555566666555543322211 2255666666666666666666666666
Q ss_pred CCccEEEeecCCCCCCCchhccCCCCcCEeecccCCCCCCCccccCCCCCCCEEeccCCCCCCccchhhcCCCCCCEEec
Q 003515 675 VSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCL 754 (814)
Q Consensus 675 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l 754 (814)
++|++|++++|.+.+.+|..++++++|++|++++|...+.+|..+.++++|+.|++++|...+.+|..+.++++|+.|++
T Consensus 236 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 315 (968)
T PLN00113 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315 (968)
T ss_pred CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEEC
Confidence 66666666666666666666666666666666666666666666666666777777666655666666666777777777
Q ss_pred cCCCCC-CcChhhhcCCCCCEEEcCCchh
Q 003515 755 KGCSMF-ELPSSILNLENLEVVKCDEETA 782 (814)
Q Consensus 755 ~~~~l~-~lp~~l~~l~~L~~L~l~~~~~ 782 (814)
++|.++ .+|..+.++++|+.|++.++..
T Consensus 316 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 344 (968)
T PLN00113 316 FSNNFTGKIPVALTSLPRLQVLQLWSNKF 344 (968)
T ss_pred CCCccCCcCChhHhcCCCCCEEECcCCCC
Confidence 776655 5566666777777777766544
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.69 E-value=5.3e-19 Score=185.70 Aligned_cols=238 Identities=21% Similarity=0.307 Sum_probs=169.1
Q ss_pred EEEecc-CCCCCCChh-cCCCCCCcEEEeeccc--ccCcccccccccCCCCCCCEEEecCCCCCCccc---ccccccccc
Q 003515 556 VVLNVR-TKKYTLPKF-LEKMDKLKVMIVTNYG--FFPAELSNIQVFGALSNLKRIRLEHVSLPSLTT---VRMKHLQNV 628 (814)
Q Consensus 556 l~l~~~-~~~~~~p~~-l~~l~~Lr~L~l~~~~--~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~L~~L 628 (814)
++|+++ +...+||.. +.+++.|-+|++++|. .+|..+ ..|.+|++|.|++|.+..+.. +.+.+|++|
T Consensus 129 iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~------RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vL 202 (1255)
T KOG0444|consen 129 IVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQI------RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVL 202 (1255)
T ss_pred EEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHH------HHHhhhhhhhcCCChhhHHHHhcCccchhhhhh
Confidence 455555 333566643 4566677777777653 244443 456667777777776655532 334455555
Q ss_pred ceeccccccc-ccCcccccccCCCCccEEecccCcCcCcCCccccCCCCccEEEeecCCCCCCCchhccCCCCcCEeecc
Q 003515 629 SLVMCNVDQV-VQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLA 707 (814)
Q Consensus 629 ~l~~~~~~~~-~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~ 707 (814)
.+++...... .|. ....+.+|..++++.|+ +..+|+.+-++.+|+.|+|++|. +.++.-..+.+.+|++|+++
T Consensus 203 hms~TqRTl~N~Pt----sld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlS 276 (1255)
T KOG0444|consen 203 HMSNTQRTLDNIPT----SLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLS 276 (1255)
T ss_pred hcccccchhhcCCC----chhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccc
Confidence 5555432211 111 12256778888888776 55678888888888888888865 55566667778888888888
Q ss_pred cCCCCCCCccccCCCCCCCEEeccCCCCC-CccchhhcCCCCCCEEeccCCCCCCcChhhhcCCCCCEEEcCCchhhhhH
Q 003515 708 SCTDLSALPDTIGNLSNLNFLDISECLNI-QELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEVVKCDEETAYQWE 786 (814)
Q Consensus 708 ~~~~~~~lp~~l~~L~~L~~L~l~~~~~~-~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~ 786 (814)
.|+ +..+|..+.+|++|+.|.+.+|... ..+|++||+|..|+.+...+|.+.-+|.+++.|..|+.|.++.|.....+
T Consensus 277 rNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLP 355 (1255)
T KOG0444|consen 277 RNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLP 355 (1255)
T ss_pred cch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeech
Confidence 864 6788999999999999998887432 46899999999999999999999889999999999999999988888887
Q ss_pred hhhhcCCCcEEEeecccccc
Q 003515 787 YFQLGQAKFRIEVIQEDINL 806 (814)
Q Consensus 787 ~~~~~l~~l~i~~~~~~~~l 806 (814)
.--|-+|.|++.+.+++.+|
T Consensus 356 eaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 356 EAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhhhcCCcceeeccCCcCc
Confidence 77787899998888776554
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.63 E-value=5.1e-15 Score=182.62 Aligned_cols=222 Identities=23% Similarity=0.360 Sum_probs=136.3
Q ss_pred CCceEEEEEeccCCCCCCChhcCCCCCCcEEEeecccccCcccccccccCCCCCCCEEEecCCCCCCccccccccccccc
Q 003515 550 APEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSLTTVRMKHLQNVS 629 (814)
Q Consensus 550 ~~~~~~l~l~~~~~~~~~p~~l~~l~~Lr~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~ 629 (814)
+++++.+.+..+.....+|..+.++++|+.|++++|..+ ..++...++++|++|++++|......+....+|+.|+
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L----~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~ 731 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL----EILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLD 731 (1153)
T ss_pred CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc----CccCCcCCCCCCCEEeCCCCCCccccccccCCcCeee
Confidence 345555555554444556666666666666666654221 1111111344555555555432111111223444444
Q ss_pred eecccccccccCc----------------------c---cccccCCCCccEEecccCcCcCcCCccccCCCCccEEEeec
Q 003515 630 LVMCNVDQVVQNS----------------------T---FHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITN 684 (814)
Q Consensus 630 l~~~~~~~~~~~~----------------------~---~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~ 684 (814)
+.++.+..++... . ......+++|+.|+|++|+..+.+|.+++++++|+.|++++
T Consensus 732 L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~ 811 (1153)
T PLN03210 732 LDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN 811 (1153)
T ss_pred cCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCC
Confidence 4444332221110 0 00011235778888888877777888888888888888888
Q ss_pred CCCCCCCchhccCCCCcCEeecccCCCCCCCccccCCCCCCCEEeccCCCCCCccchhhcCCCCCCEEeccCCC-CCCcC
Q 003515 685 CHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCS-MFELP 763 (814)
Q Consensus 685 ~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~-l~~lp 763 (814)
|..++.+|..+ ++++|++|++++|..+..+|.. .++|+.|++++| .+..+|..++.+++|+.|++++|+ ++.+|
T Consensus 812 C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 812 CINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVS 886 (1153)
T ss_pred CCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccC
Confidence 87777777765 6788888888888777777653 357788888876 456788888888888888888876 77788
Q ss_pred hhhhcCCCCCEEEcCCc
Q 003515 764 SSILNLENLEVVKCDEE 780 (814)
Q Consensus 764 ~~l~~l~~L~~L~l~~~ 780 (814)
..+.++++|+.+++.++
T Consensus 887 ~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 887 LNISKLKHLETVDFSDC 903 (1153)
T ss_pred cccccccCCCeeecCCC
Confidence 77888888888876654
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.63 E-value=3.7e-18 Score=179.48 Aligned_cols=220 Identities=22% Similarity=0.288 Sum_probs=165.9
Q ss_pred CCCChhcCCCCCCcEEEeeccc--ccCcccccccccCCCCCCCEEEecCCCCCCcc--ccccccccccceeccccccccc
Q 003515 565 YTLPKFLEKMDKLKVMIVTNYG--FFPAELSNIQVFGALSNLKRIRLEHVSLPSLT--TVRMKHLQNVSLVMCNVDQVVQ 640 (814)
Q Consensus 565 ~~~p~~l~~l~~Lr~L~l~~~~--~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~~~~~~~~~ 640 (814)
..+|..+.+.+++-+|++++|. .+|..+ |-+|..|-+|+|++|.+..++ ...+.+|++|.+++|.++.+.-
T Consensus 116 ~EvP~~LE~AKn~iVLNLS~N~IetIPn~l-----finLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQL 190 (1255)
T KOG0444|consen 116 REVPTNLEYAKNSIVLNLSYNNIETIPNSL-----FINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQL 190 (1255)
T ss_pred hhcchhhhhhcCcEEEEcccCccccCCchH-----HHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHH
Confidence 3455555666666666666543 244443 566777777888888877774 3467788888888887665422
Q ss_pred CcccccccCCCCccEEecccCcCc-CcCCccccCCCCccEEEeecCCCCCCCchhccCCCCcCEeecccCCCCCCCcccc
Q 003515 641 NSTFHFSDAFPNLLEIDIDYCNDL-IELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTI 719 (814)
Q Consensus 641 ~~~~~~~~~l~~L~~L~L~~~~~~-~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l 719 (814)
.-. ..+++|++|++++.+-+ ..+|.++..|.+|+.+|++.|. +..+|+.+-++++|+.|+|++|. +..+...+
T Consensus 191 rQL----PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~ 264 (1255)
T KOG0444|consen 191 RQL----PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNK-ITELNMTE 264 (1255)
T ss_pred hcC----ccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCc-eeeeeccH
Confidence 111 15677888888887643 4589999999999999999764 78899999999999999999975 56777778
Q ss_pred CCCCCCCEEeccCCCCCCccchhhcCCCCCCEEeccCCCCC--CcChhhhcCCCCCEEEcCCchhhhhHhhhhcCCCcE
Q 003515 720 GNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMF--ELPSSILNLENLEVVKCDEETAYQWEYFQLGQAKFR 796 (814)
Q Consensus 720 ~~L~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~--~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~ 796 (814)
+...+|+.|+++.| .+..+|+.+.+|+.|+.|++.+|+++ .||++|++|.+|+++...+|.....+.--..+++|+
T Consensus 265 ~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~ 342 (1255)
T KOG0444|consen 265 GEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQ 342 (1255)
T ss_pred HHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHH
Confidence 88899999999998 57899999999999999999999966 899999999999999888877666543322255544
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.54 E-value=1.2e-15 Score=159.98 Aligned_cols=213 Identities=18% Similarity=0.200 Sum_probs=165.3
Q ss_pred CCCC-hhcCCCCCCcEEEeecccccCcccccccccCCCCCCCEEEecCCCCCCc---cccccccccccceeccccccccc
Q 003515 565 YTLP-KFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSL---TTVRMKHLQNVSLVMCNVDQVVQ 640 (814)
Q Consensus 565 ~~~p-~~l~~l~~Lr~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~~~~~~~~~ 640 (814)
..+| ..|+++++|+.|++..|.+--.+. ..|.+|++|+.|.|..|.+..+ ..-.+.+++.|+|..|.+.....
T Consensus 210 ttLp~r~Fk~L~~L~~LdLnrN~irive~---ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~ 286 (873)
T KOG4194|consen 210 TTLPQRSFKRLPKLESLDLNRNRIRIVEG---LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE 286 (873)
T ss_pred cccCHHHhhhcchhhhhhccccceeeehh---hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc
Confidence 4455 567889999999999875422222 2378899999999999998887 34456788889999888776654
Q ss_pred CcccccccCCCCccEEecccCcCcCcCCccccCCCCccEEEeecCCCCCCCchhccCCCCcCEeecccCCCCCCCccccC
Q 003515 641 NSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIG 720 (814)
Q Consensus 641 ~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~ 720 (814)
... .+++.|+.|+|++|.+...-+++....++|+.|+|++|.+..--+.++..|..|++|+|+.|....---..+.
T Consensus 287 g~l----fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~ 362 (873)
T KOG4194|consen 287 GWL----FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV 362 (873)
T ss_pred ccc----cccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH
Confidence 433 2789999999999988777788888889999999999886666667888899999999999764433334577
Q ss_pred CCCCCCEEeccCCCCCCccc---hhhcCCCCCCEEeccCCCCCCcCh-hhhcCCCCCEEEcCCchhhh
Q 003515 721 NLSNLNFLDISECLNIQELP---ERIGELCSLKTLCLKGCSMFELPS-SILNLENLEVVKCDEETAYQ 784 (814)
Q Consensus 721 ~L~~L~~L~l~~~~~~~~lp---~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~ 784 (814)
.+++|+.|++++|.....+- ..+..|++|+.|.+.+|++..+|. .+..++.|+.|++.+|....
T Consensus 363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCccee
Confidence 88999999999986654443 335679999999999999998884 67889999999998875544
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.51 E-value=2e-15 Score=151.71 Aligned_cols=90 Identities=26% Similarity=0.378 Sum_probs=61.2
Q ss_pred chhccCCCCcCEeecccCCCCCCCccccCCCCCCCEEeccCCCC----------------------CCccch-hhcCCCC
Q 003515 692 PEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLN----------------------IQELPE-RIGELCS 748 (814)
Q Consensus 692 p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~----------------------~~~lp~-~l~~l~~ 748 (814)
|..++.+++|..|+|++| .+..+|..++.+..|+.|+++.|.+ ++.++. ++..|.+
T Consensus 428 ~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~n 506 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRN 506 (565)
T ss_pred hHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhh
Confidence 333455666666777653 4567777777777777777776632 233333 3677788
Q ss_pred CCEEeccCCCCCCcChhhhcCCCCCEEEcCCchh
Q 003515 749 LKTLCLKGCSMFELPSSILNLENLEVVKCDEETA 782 (814)
Q Consensus 749 L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~ 782 (814)
|.+|++.+|.+..+|+.+++|++|+.|.+++|..
T Consensus 507 L~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 507 LTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred cceeccCCCchhhCChhhccccceeEEEecCCcc
Confidence 8888888888888888888888888888877643
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=7.8e-16 Score=136.84 Aligned_cols=164 Identities=25% Similarity=0.449 Sum_probs=108.9
Q ss_pred CCCCCCCEEEecCCCCCCc--cccccccccccceecccccccccCcccccccCCCCccEEecccCcCcCcCCccccCCCC
Q 003515 599 GALSNLKRIRLEHVSLPSL--TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVS 676 (814)
Q Consensus 599 ~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~ 676 (814)
-.+++...|-|+.|+++.. ....+.+|+.|++.+|.+..++.... .++.|+.|+++-|. +..+|.+|+.++.
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~is-----sl~klr~lnvgmnr-l~~lprgfgs~p~ 103 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSIS-----SLPKLRILNVGMNR-LNILPRGFGSFPA 103 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhh-----hchhhhheecchhh-hhcCccccCCCch
Confidence 3444555566666666655 23456666666666666665554433 56777777777654 4556777777777
Q ss_pred ccEEEeecCCCCC-CCchhccCCCCcCEeecccCCCCCCCccccCCCCCCCEEeccCCCCCCccchhhcCCCCCCEEecc
Q 003515 677 IKKLRITNCHKLS-ALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLK 755 (814)
Q Consensus 677 L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~ 755 (814)
|+.||+.+|.+.. .+|..|-.++.|+.|+|++|. ...+|..+++|++|+.|.+.+|. +-.+|.+++.++.|++|+++
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhcc
Confidence 7777777665433 466666666777777777753 45677777777777777777763 45677777777777777777
Q ss_pred CCCCCCcChhhhcCC
Q 003515 756 GCSMFELPSSILNLE 770 (814)
Q Consensus 756 ~~~l~~lp~~l~~l~ 770 (814)
+|.++.+|+.++++.
T Consensus 182 gnrl~vlppel~~l~ 196 (264)
T KOG0617|consen 182 GNRLTVLPPELANLD 196 (264)
T ss_pred cceeeecChhhhhhh
Confidence 777777777666543
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.47 E-value=3.4e-14 Score=149.29 Aligned_cols=89 Identities=19% Similarity=0.096 Sum_probs=47.2
Q ss_pred CCCCcCEeecccCCCCCCCccccCCCCCCCEEeccCCCCCCccchhhcCCCCCCEEeccCCCCCCcCh-hhhcCCCCCEE
Q 003515 697 KLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPS-SILNLENLEVV 775 (814)
Q Consensus 697 ~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L 775 (814)
.+.++++|+|..|+....--.++.+|++|++|+++.|.....-++....+++|++|+|++|.++.+++ .+.-|..|+.|
T Consensus 267 ~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~L 346 (873)
T KOG4194|consen 267 GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEEL 346 (873)
T ss_pred eecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhh
Confidence 34444455555444332223445556666666666655444445555556666666666666665543 34455555555
Q ss_pred EcCCchhhhh
Q 003515 776 KCDEETAYQW 785 (814)
Q Consensus 776 ~l~~~~~~~~ 785 (814)
+++.|+....
T Consensus 347 nLs~Nsi~~l 356 (873)
T KOG4194|consen 347 NLSHNSIDHL 356 (873)
T ss_pred cccccchHHH
Confidence 5555554444
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=1.4e-15 Score=135.28 Aligned_cols=158 Identities=22% Similarity=0.358 Sum_probs=140.6
Q ss_pred ccccccccceecccccccccCcccccccCCCCccEEecccCcCcCcCCccccCCCCccEEEeecCCCCCCCchhccCCCC
Q 003515 621 RMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVN 700 (814)
Q Consensus 621 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 700 (814)
.+.+...|.++.|++....+... .+.+|++|++++|+ ..++|.+|+.+++|+.|+++-|. +..+|..||.++-
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia-----~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~ 103 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIA-----ELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPA 103 (264)
T ss_pred chhhhhhhhcccCceeecCCcHH-----Hhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hhcCccccCCCch
Confidence 46788889999999888777654 68999999999987 67899999999999999999865 7789999999999
Q ss_pred cCEeecccCCCC-CCCccccCCCCCCCEEeccCCCCCCccchhhcCCCCCCEEeccCCCCCCcChhhhcCCCCCEEEcCC
Q 003515 701 LQMLTLASCTDL-SALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEVVKCDE 779 (814)
Q Consensus 701 L~~L~L~~~~~~-~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~ 779 (814)
|+.|+|+.|+.. ..+|..+..++.|+.|++++|. .+.+|..++++++|+.|.+.+|.+-.+|..++.|+.|+.|++.+
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccc
Confidence 999999987654 4789999999999999999984 67899999999999999999999999999999999999999999
Q ss_pred chhhhhH
Q 003515 780 ETAYQWE 786 (814)
Q Consensus 780 ~~~~~~~ 786 (814)
|+....+
T Consensus 183 nrl~vlp 189 (264)
T KOG0617|consen 183 NRLTVLP 189 (264)
T ss_pred ceeeecC
Confidence 8776643
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.46 E-value=5.5e-16 Score=155.69 Aligned_cols=210 Identities=23% Similarity=0.328 Sum_probs=142.3
Q ss_pred CCCChhcCCCCCCcEEEeeccc--ccCccccccc-----------------ccCCCCCCCEEEecCCCCCCcc--ccccc
Q 003515 565 YTLPKFLEKMDKLKVMIVTNYG--FFPAELSNIQ-----------------VFGALSNLKRIRLEHVSLPSLT--TVRMK 623 (814)
Q Consensus 565 ~~~p~~l~~l~~Lr~L~l~~~~--~~~~~~~~l~-----------------~l~~l~~L~~L~l~~n~l~~~~--~~~l~ 623 (814)
..+|++++++.+++.++++.+. .+|.++.++. .++.+..|..++..+|++.+++ ...+.
T Consensus 81 ~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~ 160 (565)
T KOG0472|consen 81 SQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLS 160 (565)
T ss_pred hhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHH
Confidence 5566667777666666666653 2444432111 1234444555555555555552 23345
Q ss_pred cccccceecccccccccCcccccccCCCCccEEecccCcCcCcCCccccCCCCccEEEeecCCCCCCCchhccCCCCcCE
Q 003515 624 HLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQM 703 (814)
Q Consensus 624 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 703 (814)
+|..|++.+++...+.+... .++.|++|+..+| .++.+|..++.|.+|..|++..|. +..+| .|+.+..|..
T Consensus 161 ~l~~l~~~~n~l~~l~~~~i-----~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lP-ef~gcs~L~E 232 (565)
T KOG0472|consen 161 KLSKLDLEGNKLKALPENHI-----AMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNK-IRFLP-EFPGCSLLKE 232 (565)
T ss_pred HHHHhhccccchhhCCHHHH-----HHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcc-cccCC-CCCccHHHHH
Confidence 55666666666555444332 3667777777775 466777778888888888888754 66777 5777777888
Q ss_pred eecccCCCCCCCccccC-CCCCCCEEeccCCCCCCccchhhcCCCCCCEEeccCCCCCCcChhhhcCCCCCEEEcCCchh
Q 003515 704 LTLASCTDLSALPDTIG-NLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEVVKCDEETA 782 (814)
Q Consensus 704 L~L~~~~~~~~lp~~l~-~L~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~ 782 (814)
|.+..| .+..+|..++ +|++|..||+.+| .+..+|+++..+.+|+.|++++|.++.+|..+++| .|+.|-+.+|-.
T Consensus 233 lh~g~N-~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 233 LHVGEN-QIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred HHhccc-HHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence 887764 4567776655 7888888888887 57888888888888888898888888888888888 888888887765
Q ss_pred hhh
Q 003515 783 YQW 785 (814)
Q Consensus 783 ~~~ 785 (814)
...
T Consensus 310 rTi 312 (565)
T KOG0472|consen 310 RTI 312 (565)
T ss_pred HHH
Confidence 554
No 15
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.44 E-value=1.7e-11 Score=150.42 Aligned_cols=294 Identities=14% Similarity=0.163 Sum_probs=182.3
Q ss_pred CCCCCCCCCCccchhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEec-CCCCHHHHHHHH
Q 003515 162 APDPPPVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVS-QTPNVKGIVQKV 240 (814)
Q Consensus 162 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~-~~~~~~~~~~~i 240 (814)
+|..+..+|-|+.-.+.+-. ....+++.|+|++|.||||++..+.+ .++. +.|+++. ...+...+...+
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~------~~~~-~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAA------GKNN-LGWYSLDESDNQPERFASYL 78 (903)
T ss_pred CCCCccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHH------hCCC-eEEEecCcccCCHHHHHHHH
Confidence 45555667777655444422 23578999999999999999998875 2333 7799996 445666777777
Q ss_pred HHHhCCCCCCC-CCh---------HHHHHHHHHHhccc--CCCcEEEEEeCCCCCch----HHHhhhccc-CCCeEEEEE
Q 003515 241 YQHKGYAVPEF-QTD---------EDAINDLERLLKPI--RPEAILLVLDDVWSGSE----SLLQKFKFQ-LPYYKILVT 303 (814)
Q Consensus 241 ~~~l~~~~~~~-~~~---------~~~~~~l~~~l~~l--~~kr~LlVlDdv~~~~~----~~~~~~~~~-~~gs~iivT 303 (814)
+..++...+.. ... ......+..++..+ .+.+++|||||+...++ ..+..+... .++.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 77764221110 000 11112233333222 26899999999965432 234444433 346788899
Q ss_pred ccccccC-------CCCccccC----CCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHHHHHHhCCC
Q 003515 304 SRSVFPQ-------FGSGYDLK----PLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGGSLCGK 372 (814)
Q Consensus 304 tR~~~~~-------~~~~~~l~----~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~L~~~ 372 (814)
||..... .+....+. +|+.+|+.++|...... .-..+...+|.+.|+|.|+++..++..++..
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~------~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~ 232 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS------PIEAAESSRLCDDVEGWATALQLIALSARQN 232 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC------CCCHHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 9985211 12234455 99999999999765422 1236678899999999999999988776543
Q ss_pred ChHHHHHHHHHHhccccccCChHHHHHHHH-HHHhhchHHHHHHHhHhCCCCCCcccCHHHHHHHHHHhhccchHHHHHH
Q 003515 373 HPAIWQKRVKEWTQDVSVFHSNKEILSCLE-RSLDALNNEVKECYMDLCSFPEDQRIPITALVDMWMELYELVDELFAIA 451 (814)
Q Consensus 373 ~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~-~sy~~L~~~~k~cf~~ls~fp~~~~i~~~~Li~~W~a~~~~~~~~~~~~ 451 (814)
+... ......+.. .....+...+. ..++.||++.+..+...|+++ .|+.+.+-.+ .+. ..+.+
T Consensus 233 ~~~~-~~~~~~~~~-----~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l------~~~-~~~~~ 296 (903)
T PRK04841 233 NSSL-HDSARRLAG-----INASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRV------TGE-ENGQM 296 (903)
T ss_pred CCch-hhhhHhhcC-----CCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHH------cCC-CcHHH
Confidence 2100 011111100 01234555443 348899999999999999997 3443332221 122 25578
Q ss_pred HHHhhhhhhhhhhhhhcccCCCCCCccchhhhhhHHHHHHHHHhh
Q 003515 452 NLHELSNLNLANCVATRKYASDDSCYNDHFVMQHDLLRELAIYQS 496 (814)
Q Consensus 452 ~l~~L~~rsll~~~~~~~~~~~~~~~~~~~~~mHdlv~d~a~~~~ 496 (814)
.+++|.+.+++.... ..+...|+.|++++++.+...
T Consensus 297 ~L~~l~~~~l~~~~~---------~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 297 RLEELERQGLFIQRM---------DDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred HHHHHHHCCCeeEee---------cCCCCEEehhHHHHHHHHHHH
Confidence 899999999864211 112346788999999997664
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.28 E-value=3.2e-11 Score=138.38 Aligned_cols=211 Identities=19% Similarity=0.192 Sum_probs=114.5
Q ss_pred ceEEEEEeccCCCCCCChhcCCCCCCcEEEeecccc--cCcccccccc-------cC----CCCCCCEEEecCCCCCCcc
Q 003515 552 EVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGF--FPAELSNIQV-------FG----ALSNLKRIRLEHVSLPSLT 618 (814)
Q Consensus 552 ~~~~l~l~~~~~~~~~p~~l~~l~~Lr~L~l~~~~~--~~~~~~~l~~-------l~----~l~~L~~L~l~~n~l~~~~ 618 (814)
.++.+.+..+. ...+|. ..++|++|++++|.+ +|....++.. +. ...+|+.|++++|++..++
T Consensus 223 ~L~~L~L~~N~-Lt~LP~---lp~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP 298 (788)
T PRK15387 223 HITTLVIPDNN-LTSLPA---LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLP 298 (788)
T ss_pred CCCEEEccCCc-CCCCCC---CCCCCcEEEecCCccCcccCcccccceeeccCCchhhhhhchhhcCEEECcCCcccccc
Confidence 34445444432 234553 246788888887633 2322111111 00 1124555566666555543
Q ss_pred ccccccccccceecccccccccCcc------------cccccCCCCccEEecccCcCcCcCCccccCCCCccEEEeecCC
Q 003515 619 TVRMKHLQNVSLVMCNVDQVVQNST------------FHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCH 686 (814)
Q Consensus 619 ~~~l~~L~~L~l~~~~~~~~~~~~~------------~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~ 686 (814)
. .+++|+.|++++|.+..+..... ..+.....+|+.|+|++|++. .+|.. ..+|+.|++++|.
T Consensus 299 ~-~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~ 373 (788)
T PRK15387 299 V-LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNR 373 (788)
T ss_pred c-cccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccC-CCCCC---Ccccceehhhccc
Confidence 2 24566777776665554322100 000000113444444444322 23331 1234444444443
Q ss_pred CCCCCchhccCCCCcCEeecccCCCCCCCccccCCCCCCCEEeccCCCCCCccchhhcCCCCCCEEeccCCCCCCcChhh
Q 003515 687 KLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSI 766 (814)
Q Consensus 687 ~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l 766 (814)
+..+|.. ..+|+.|++++|.. ..+|.. .++|+.|++++|. +..+|... .+|+.|++++|.++.+|..+
T Consensus 374 -L~~LP~l---~~~L~~LdLs~N~L-t~LP~l---~s~L~~LdLS~N~-LssIP~l~---~~L~~L~Ls~NqLt~LP~sl 441 (788)
T PRK15387 374 -LTSLPAL---PSGLKELIVSGNRL-TSLPVL---PSELKELMVSGNR-LTSLPMLP---SGLLSLSVYRNQLTRLPESL 441 (788)
T ss_pred -cccCccc---ccccceEEecCCcc-cCCCCc---ccCCCEEEccCCc-CCCCCcch---hhhhhhhhccCcccccChHH
Confidence 2234432 24677777777653 456643 3578888888875 45677543 46788999999999999999
Q ss_pred hcCCCCCEEEcCCchhh
Q 003515 767 LNLENLEVVKCDEETAY 783 (814)
Q Consensus 767 ~~l~~L~~L~l~~~~~~ 783 (814)
+++++|+.|++++|...
T Consensus 442 ~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 442 IHLSSETTVNLEGNPLS 458 (788)
T ss_pred hhccCCCeEECCCCCCC
Confidence 99999999999988554
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.28 E-value=9.2e-12 Score=143.74 Aligned_cols=160 Identities=18% Similarity=0.279 Sum_probs=81.1
Q ss_pred CCCEEEecCCCCCCccccccccccccceecccccccccCcccccccCCCCccEEecccCcCcCcCCccccCCCCccEEEe
Q 003515 603 NLKRIRLEHVSLPSLTTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRI 682 (814)
Q Consensus 603 ~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l 682 (814)
+|++|++++|++..++...+.+|+.|++++|.+..+... -.++|+.|++++|.+. .+|..+ .++|++|++
T Consensus 263 ~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~-------lp~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~L 332 (754)
T PRK15370 263 ALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLPAH-------LPSGITHLNVQSNSLT-ALPETL--PPGLKTLEA 332 (754)
T ss_pred CCCEEECcCCccCccccccCCCCcEEECCCCccccCccc-------chhhHHHHHhcCCccc-cCCccc--cccceeccc
Confidence 455555555555544332234555555555544432211 0124555555555433 344433 245666666
Q ss_pred ecCCCCCCCchhccCCCCcCEeecccCCCCCCCccccCCCCCCCEEeccCCCCCCccchhhcCCCCCCEEeccCCCCCCc
Q 003515 683 TNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFEL 762 (814)
Q Consensus 683 ~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~l 762 (814)
++|.+ ..+|..+. ++|+.|++++|.. ..+|..+. ++|+.|++++|. +..+|..+. .+|+.|++++|+++.+
T Consensus 333 s~N~L-t~LP~~l~--~sL~~L~Ls~N~L-~~LP~~lp--~~L~~LdLs~N~-Lt~LP~~l~--~sL~~LdLs~N~L~~L 403 (754)
T PRK15370 333 GENAL-TSLPASLP--PELQVLDVSKNQI-TVLPETLP--PTITTLDVSRNA-LTNLPENLP--AALQIMQASRNNLVRL 403 (754)
T ss_pred cCCcc-ccCChhhc--CcccEEECCCCCC-CcCChhhc--CCcCEEECCCCc-CCCCCHhHH--HHHHHHhhccCCcccC
Confidence 66543 33554442 4666666666543 34554432 466666666653 345555543 2466666666666655
Q ss_pred Chhhhc----CCCCCEEEcCCch
Q 003515 763 PSSILN----LENLEVVKCDEET 781 (814)
Q Consensus 763 p~~l~~----l~~L~~L~l~~~~ 781 (814)
|..+.+ ++.+..|++.+|.
T Consensus 404 P~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 404 PESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred chhHHHHhhcCCCccEEEeeCCC
Confidence 554432 3556666666554
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.26 E-value=3.1e-13 Score=149.85 Aligned_cols=217 Identities=21% Similarity=0.313 Sum_probs=151.3
Q ss_pred CCceEEEEEeccCCCCCCChhcCCCCCCcEEEeeccc--ccCcccccccccCCCCCCCEEEecCCCCCCccccccc----
Q 003515 550 APEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYG--FFPAELSNIQVFGALSNLKRIRLEHVSLPSLTTVRMK---- 623 (814)
Q Consensus 550 ~~~~~~l~l~~~~~~~~~p~~l~~l~~Lr~L~l~~~~--~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~l~---- 623 (814)
|.+++.+..+.+.. ..+|..+..+.+|+.|.+..|. .+|.. ++.++.|++|+|..|+++.++...+.
T Consensus 263 ~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~------le~~~sL~tLdL~~N~L~~lp~~~l~v~~~ 335 (1081)
T KOG0618|consen 263 CANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIPPF------LEGLKSLRTLDLQSNNLPSLPDNFLAVLNA 335 (1081)
T ss_pred cccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCc------ccccceeeeeeehhccccccchHHHhhhhH
Confidence 33444443333322 4445555555555555555442 23333 35688899999999998888554333
Q ss_pred cccccceecccccccccCcccccccCCCCccEEecccCcCcCcCCccccCCCCccEEEeecCCCCCCCch-hccCCCCcC
Q 003515 624 HLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPE-GIGKLVNLQ 702 (814)
Q Consensus 624 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~ 702 (814)
.|+.|..+.+.+........ ..++.|+.|++.+|.+....-.-+.++.+|+.|+|++|. ++.+|. .+.+|..|+
T Consensus 336 ~l~~ln~s~n~l~~lp~~~e----~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~Le 410 (1081)
T KOG0618|consen 336 SLNTLNVSSNKLSTLPSYEE----NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELE 410 (1081)
T ss_pred HHHHHhhhhccccccccccc----hhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHHHHhchHHhH
Confidence 24445555444443332111 146789999999998887655558888999999999976 566664 567899999
Q ss_pred EeecccCCCCCCCccccCCCCCCCEEeccCCCCCCccchhhcCCCCCCEEeccCCCCC--CcChhhhcCCCCCEEEcCCc
Q 003515 703 MLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMF--ELPSSILNLENLEVVKCDEE 780 (814)
Q Consensus 703 ~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~--~lp~~l~~l~~L~~L~l~~~ 780 (814)
.|+|+|| .+..+|.++.++..|+.|...+| .+..+| ++..++.|+.+|++.|.++ .+|..... ++|+.|++.+|
T Consensus 411 eL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN-~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN 486 (1081)
T KOG0618|consen 411 ELNLSGN-KLTTLPDTVANLGRLHTLRAHSN-QLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGN 486 (1081)
T ss_pred HHhcccc-hhhhhhHHHHhhhhhHHHhhcCC-ceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCC
Confidence 9999996 57899999999999999998887 567888 8999999999999999987 44444443 89999999988
Q ss_pred hh
Q 003515 781 TA 782 (814)
Q Consensus 781 ~~ 782 (814)
..
T Consensus 487 ~~ 488 (1081)
T KOG0618|consen 487 TR 488 (1081)
T ss_pred cc
Confidence 63
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.26 E-value=2.5e-11 Score=140.16 Aligned_cols=202 Identities=20% Similarity=0.312 Sum_probs=128.8
Q ss_pred ceEEEEEeccCCCCCCChhcCCCCCCcEEEeecccc--cCcccccccccCCCCCCCEEEecCCCCCCccccccccccccc
Q 003515 552 EVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGF--FPAELSNIQVFGALSNLKRIRLEHVSLPSLTTVRMKHLQNVS 629 (814)
Q Consensus 552 ~~~~l~l~~~~~~~~~p~~l~~l~~Lr~L~l~~~~~--~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~ 629 (814)
.+..+.+..+.. ..+|..+. ++|+.|++++|.+ +|.. -.++|+.|+|++|.+..++.....+|+.|+
T Consensus 200 ~L~~L~Ls~N~L-tsLP~~l~--~nL~~L~Ls~N~LtsLP~~--------l~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~ 268 (754)
T PRK15370 200 QITTLILDNNEL-KSLPENLQ--GNIKTLYANSNQLTSIPAT--------LPDTIQEMELSINRITELPERLPSALQSLD 268 (754)
T ss_pred CCcEEEecCCCC-CcCChhhc--cCCCEEECCCCccccCChh--------hhccccEEECcCCccCcCChhHhCCCCEEE
Confidence 344444443322 34555443 4677777776533 2221 123577777777777666444455677777
Q ss_pred eecccccccccCcccccccCCCCccEEecccCcCcCcCCccccCCCCccEEEeecCCCCCCCchhccCCCCcCEeecccC
Q 003515 630 LVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASC 709 (814)
Q Consensus 630 l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~ 709 (814)
+++|.+..+... -.++|+.|++++|++. .+|..+. .+|++|++++|.+. .+|..+ .++|++|++++|
T Consensus 269 Ls~N~L~~LP~~-------l~~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N 335 (754)
T PRK15370 269 LFHNKISCLPEN-------LPEELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGEN 335 (754)
T ss_pred CcCCccCccccc-------cCCCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCccc--cccceeccccCC
Confidence 777766543221 1246777787777644 4555442 46777777776543 456543 367888888887
Q ss_pred CCCCCCccccCCCCCCCEEeccCCCCCCccchhhcCCCCCCEEeccCCCCCCcChhhhcCCCCCEEEcCCchhhhh
Q 003515 710 TDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEVVKCDEETAYQW 785 (814)
Q Consensus 710 ~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~ 785 (814)
. +..+|..+. ++|+.|++++|. +..+|..+. ++|+.|++++|.++.+|..+.. .|+.|++++|....+
T Consensus 336 ~-Lt~LP~~l~--~sL~~L~Ls~N~-L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~~--sL~~LdLs~N~L~~L 403 (754)
T PRK15370 336 A-LTSLPASLP--PELQVLDVSKNQ-ITVLPETLP--PTITTLDVSRNALTNLPENLPA--ALQIMQASRNNLVRL 403 (754)
T ss_pred c-cccCChhhc--CcccEEECCCCC-CCcCChhhc--CCcCEEECCCCcCCCCCHhHHH--HHHHHhhccCCcccC
Confidence 5 445776553 689999999885 556777664 6899999999999988887753 577888888766544
No 20
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.21 E-value=3.7e-09 Score=116.46 Aligned_cols=285 Identities=13% Similarity=0.122 Sum_probs=164.6
Q ss_pred CCCCCCCccchhHHHHHHHh----hCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccC-CCcEEEEEecCCCCHHHHHHH
Q 003515 165 PPPVTPGLDVPLQELKLELF----KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF-KDNIFFVTVSQTPNVKGIVQK 239 (814)
Q Consensus 165 ~~~~~vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~~wv~v~~~~~~~~~~~~ 239 (814)
.|+.++||++++++|...+. ......+.|+|++|+|||++++.++++ ..... ...++++++....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~--l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEE--LEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 45678999999999998885 233466889999999999999999984 33222 222457777777788899999
Q ss_pred HHHHhCCC-CCCC-CChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc----hHHHhhhc---ccCCCeE--EEEEccccc
Q 003515 240 VYQHKGYA-VPEF-QTDEDAINDLERLLKPIRPEAILLVLDDVWSGS----ESLLQKFK---FQLPYYK--ILVTSRSVF 308 (814)
Q Consensus 240 i~~~l~~~-~~~~-~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~----~~~~~~~~---~~~~gs~--iivTtR~~~ 308 (814)
++.++... .+.. ....+....+.+.+.. .+++.+||||+++... ...+..+. ...++++ +|.++....
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDE-RDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcc
Confidence 99998752 2211 1233444444444421 3567899999997532 22222221 1223333 555554331
Q ss_pred -----------cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHc----CCchhHHHHHHHHh----
Q 003515 309 -----------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRAC----KGCPLALTVVGGSL---- 369 (814)
Q Consensus 309 -----------~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~----~g~Plai~~~~~~L---- 369 (814)
......+.+++++.++..+++..++...... ..-.++..+.|++.+ |..+.|+.++-...
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~-~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYP-GVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhccc-CCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 0012357899999999999998776322111 011244445555554 55677777654322
Q ss_pred -CCC---ChHHHHHHHHHHhccccccCChHHHHHHHHHHHhhchHHHHHHHhHhCCC-CC-CcccCHHHHHHHHH--Hhh
Q 003515 370 -CGK---HPAIWQKRVKEWTQDVSVFHSNKEILSCLERSLDALNNEVKECYMDLCSF-PE-DQRIPITALVDMWM--ELY 441 (814)
Q Consensus 370 -~~~---~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~ls~f-p~-~~~i~~~~Li~~W~--a~~ 441 (814)
++. +.+....++.... .....-.+..||.+.|..+..++.. .. ...+....+...-. ...
T Consensus 264 ~~~~~~I~~~~v~~a~~~~~------------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKSE------------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred HcCCCCcCHHHHHHHHHHHH------------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 111 2444444443321 1234456789999888776655422 21 13355555543321 111
Q ss_pred -ccch--HHHHHHHHHhhhhhhhhhhh
Q 003515 442 -ELVD--ELFAIANLHELSNLNLANCV 465 (814)
Q Consensus 442 -~~~~--~~~~~~~l~~L~~rsll~~~ 465 (814)
.+.+ .....+++.+|...+++...
T Consensus 332 ~~~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 332 LGYEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred cCCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 1111 13556788888888888753
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.18 E-value=4.8e-12 Score=135.46 Aligned_cols=219 Identities=19% Similarity=0.141 Sum_probs=147.9
Q ss_pred CChhcCCCCCCcEEEeeccccc--Ccccccc-cccCCCCCCCEEEecCCCCCCc---ccccc---ccccccceecccccc
Q 003515 567 LPKFLEKMDKLKVMIVTNYGFF--PAELSNI-QVFGALSNLKRIRLEHVSLPSL---TTVRM---KHLQNVSLVMCNVDQ 637 (814)
Q Consensus 567 ~p~~l~~l~~Lr~L~l~~~~~~--~~~~~~l-~~l~~l~~L~~L~l~~n~l~~~---~~~~l---~~L~~L~l~~~~~~~ 637 (814)
++..+...+.|+.|+++++... +..+..+ ..+..+++|++|++++|.+... ....+ ++|+.|++++|.+..
T Consensus 43 i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~ 122 (319)
T cd00116 43 LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD 122 (319)
T ss_pred HHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch
Confidence 5666777888899988875433 2222111 2356688999999999988643 11223 349999999887653
Q ss_pred cccCcccccccCC-CCccEEecccCcCcCc----CCccccCCCCccEEEeecCCCCC----CCchhccCCCCcCEeeccc
Q 003515 638 VVQNSTFHFSDAF-PNLLEIDIDYCNDLIE----LPDGLCDIVSIKKLRITNCHKLS----ALPEGIGKLVNLQMLTLAS 708 (814)
Q Consensus 638 ~~~~~~~~~~~~l-~~L~~L~L~~~~~~~~----lp~~i~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~L~~ 708 (814)
............+ ++|+.|++++|.+.+. ++..+..+.+|++|++++|.+.+ .++..+..+++|+.|++++
T Consensus 123 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 202 (319)
T cd00116 123 RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN 202 (319)
T ss_pred HHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccC
Confidence 1111111112245 8899999999987632 44556777889999999987663 2444566678999999999
Q ss_pred CCCCC----CCccccCCCCCCCEEeccCCCCCCccchhhc-----CCCCCCEEeccCCCCC-----CcChhhhcCCCCCE
Q 003515 709 CTDLS----ALPDTIGNLSNLNFLDISECLNIQELPERIG-----ELCSLKTLCLKGCSMF-----ELPSSILNLENLEV 774 (814)
Q Consensus 709 ~~~~~----~lp~~l~~L~~L~~L~l~~~~~~~~lp~~l~-----~l~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~ 774 (814)
|.... .++..+..+++|++|++++|......+..+. ..+.|+.|++++|.++ .+...+.++++|+.
T Consensus 203 n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~ 282 (319)
T cd00116 203 NGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLE 282 (319)
T ss_pred CccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccE
Confidence 86542 3445667788999999999865442222221 2478999999999886 34556777889999
Q ss_pred EEcCCchhhhh
Q 003515 775 VKCDEETAYQW 785 (814)
Q Consensus 775 L~l~~~~~~~~ 785 (814)
+++++|.....
T Consensus 283 l~l~~N~l~~~ 293 (319)
T cd00116 283 LDLRGNKFGEE 293 (319)
T ss_pred EECCCCCCcHH
Confidence 99988766543
No 22
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.17 E-value=1.3e-08 Score=110.88 Aligned_cols=288 Identities=15% Similarity=0.143 Sum_probs=163.5
Q ss_pred CCCCCCCccchhHHHHHHHhh----CCcEEEEEEcCCCCCHHHHHHHHhhchhhh-cc--CCCcEEEEEecCCCCHHHHH
Q 003515 165 PPPVTPGLDVPLQELKLELFK----DGRQVIVVSAPGGYGKTTLVKKLCKDDQVL-GK--FKDNIFFVTVSQTPNVKGIV 237 (814)
Q Consensus 165 ~~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~--F~~~~~wv~v~~~~~~~~~~ 237 (814)
.|+.++||++++++|..+|.. ...+.+.|+|++|+|||++++.++++-.-. .. .+..++|+++....+...++
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 345789999999999998873 335679999999999999999999742111 11 11235688887777888999
Q ss_pred HHHHHHhC---CCCCCC-CChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc---hHHHhhhc-c----cCC--CeEEEEE
Q 003515 238 QKVYQHKG---YAVPEF-QTDEDAINDLERLLKPIRPEAILLVLDDVWSGS---ESLLQKFK-F----QLP--YYKILVT 303 (814)
Q Consensus 238 ~~i~~~l~---~~~~~~-~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~---~~~~~~~~-~----~~~--gs~iivT 303 (814)
..|++++. ...+.. ....+....+...+.. .+++++||||+++... ...+..+. . ..+ ...+|.+
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNE-RGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHh-cCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 99999883 322211 1222233333333311 3678899999997651 22222221 1 112 2344444
Q ss_pred ccccc----------cCC-CCccccCCCCHHHHHHHHHHHcccC--CCCCCCCChHHHHHHHHHcCCchhHH-HHHHHHh
Q 003515 304 SRSVF----------PQF-GSGYDLKPLNDEAARTLFRYSANLQ--DGNSYIPDENLVNKILRACKGCPLAL-TVVGGSL 369 (814)
Q Consensus 304 tR~~~----------~~~-~~~~~l~~L~~~~~~~Lf~~~a~~~--~~~~~~~~~~~~~~i~~~~~g~Plai-~~~~~~L 369 (814)
+.... ... ...+.+++++.++..+++..++... ......+..+....++....|.|..+ .++-...
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~ 251 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAG 251 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 43321 011 1357899999999999998876311 11111111234445666677888433 3322211
Q ss_pred -----CC---CChHHHHHHHHHHhccccccCChHHHHHHHHHHHhhchHHHHHHHhHhCCC--CCCcccCHHHHHHHHH-
Q 003515 370 -----CG---KHPAIWQKRVKEWTQDVSVFHSNKEILSCLERSLDALNNEVKECYMDLCSF--PEDQRIPITALVDMWM- 438 (814)
Q Consensus 370 -----~~---~~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~ls~f--p~~~~i~~~~Li~~W~- 438 (814)
.+ -+.+..+.++.... .....-.+..||.+.+..+..++.. .++..+....+...+-
T Consensus 252 ~~a~~~~~~~it~~~v~~a~~~~~------------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 252 EIAEREGAERVTEDHVEKAQEKIE------------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 11 12333333333221 1233456778898888666554321 1334466666666443
Q ss_pred --Hhhccch--HHHHHHHHHhhhhhhhhhhh
Q 003515 439 --ELYELVD--ELFAIANLHELSNLNLANCV 465 (814)
Q Consensus 439 --a~~~~~~--~~~~~~~l~~L~~rsll~~~ 465 (814)
......+ .....+++..|...+++...
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 320 VCEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 1111111 14677888888888888853
No 23
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.15 E-value=6.8e-09 Score=107.94 Aligned_cols=190 Identities=19% Similarity=0.237 Sum_probs=119.4
Q ss_pred hhHHHHHHHh---hCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCC
Q 003515 175 PLQELKLELF---KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEF 251 (814)
Q Consensus 175 ~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~ 251 (814)
..+++...+. ....+++.|+|++|+|||||++.+++. ... ....+.|+ +....+..+++..+...++.....
T Consensus 27 ~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~--l~~-~~~~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~- 101 (269)
T TIGR03015 27 GHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKR--LDQ-ERVVAAKL-VNTRVDAEDLLRMVAADFGLETEG- 101 (269)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHh--cCC-CCeEEeee-eCCCCCHHHHHHHHHHHcCCCCCC-
Confidence 3344444443 444668999999999999999999973 221 11112233 234457788999999988765432
Q ss_pred CChHHHHHHHHHHh-c-ccCCCcEEEEEeCCCCCchHHHhhh---ccc----CCCeEEEEEccccc----c--C------
Q 003515 252 QTDEDAINDLERLL-K-PIRPEAILLVLDDVWSGSESLLQKF---KFQ----LPYYKILVTSRSVF----P--Q------ 310 (814)
Q Consensus 252 ~~~~~~~~~l~~~l-~-~l~~kr~LlVlDdv~~~~~~~~~~~---~~~----~~gs~iivTtR~~~----~--~------ 310 (814)
.........+...+ . ...+++.+||+||++......+..+ ... .....|++|..... . .
T Consensus 102 ~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~ 181 (269)
T TIGR03015 102 RDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQ 181 (269)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHh
Confidence 22233344454444 2 2368889999999988664433322 211 12234556554321 0 0
Q ss_pred -CCCccccCCCCHHHHHHHHHHHcccCCCCCCCC-ChHHHHHHHHHcCCchhHHHHHHHHh
Q 003515 311 -FGSGYDLKPLNDEAARTLFRYSANLQDGNSYIP-DENLVNKILRACKGCPLALTVVGGSL 369 (814)
Q Consensus 311 -~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~-~~~~~~~i~~~~~g~Plai~~~~~~L 369 (814)
....+.+++++.+|..+++...+...+...... .++..+.|++.++|.|..|..++..+
T Consensus 182 r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 182 RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 122578999999999999987664332211122 36889999999999999999988865
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.14 E-value=1.3e-11 Score=132.07 Aligned_cols=216 Identities=18% Similarity=0.127 Sum_probs=153.0
Q ss_pred CChhcCCCCCCcEEEeecccccCccccccc-ccCCCCCCCEEEecCCCCCCc---------cccccccccccceeccccc
Q 003515 567 LPKFLEKMDKLKVMIVTNYGFFPAELSNIQ-VFGALSNLKRIRLEHVSLPSL---------TTVRMKHLQNVSLVMCNVD 636 (814)
Q Consensus 567 ~p~~l~~l~~Lr~L~l~~~~~~~~~~~~l~-~l~~l~~L~~L~l~~n~l~~~---------~~~~l~~L~~L~l~~~~~~ 636 (814)
.+..+..+.+|+.|++.+++..+.....+. .+...++|++++++++.+... ....+++|+.|++.+|.+.
T Consensus 15 ~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 15 ATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred hHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 445667788899999999876443322222 356778899999999988731 2234679999999998876
Q ss_pred ccccCcccccccCCCCccEEecccCcCcC----cCCccccCC-CCccEEEeecCCCCC----CCchhccCCCCcCEeecc
Q 003515 637 QVVQNSTFHFSDAFPNLLEIDIDYCNDLI----ELPDGLCDI-VSIKKLRITNCHKLS----ALPEGIGKLVNLQMLTLA 707 (814)
Q Consensus 637 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~----~lp~~i~~l-~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~L~ 707 (814)
.........+... ++|+.|++++|.+.. .+...+..+ ++|+.|++++|.+.+ .++..+..+++|++|+++
T Consensus 95 ~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~ 173 (319)
T cd00116 95 PDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLA 173 (319)
T ss_pred hhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECc
Confidence 4333222223333 669999999998763 234456677 899999999998763 344556778899999999
Q ss_pred cCCCCC----CCccccCCCCCCCEEeccCCCCCC----ccchhhcCCCCCCEEeccCCCCCC-cChhh-h----cCCCCC
Q 003515 708 SCTDLS----ALPDTIGNLSNLNFLDISECLNIQ----ELPERIGELCSLKTLCLKGCSMFE-LPSSI-L----NLENLE 773 (814)
Q Consensus 708 ~~~~~~----~lp~~l~~L~~L~~L~l~~~~~~~----~lp~~l~~l~~L~~L~l~~~~l~~-lp~~l-~----~l~~L~ 773 (814)
+|...+ .++..+..+++|++|++++|.... .++..+..+++|++|++++|.++. .+..+ . ..+.|+
T Consensus 174 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~ 253 (319)
T cd00116 174 NNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLL 253 (319)
T ss_pred CCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCce
Confidence 987653 244456667899999999986543 345566788999999999999873 12222 2 247999
Q ss_pred EEEcCCchhh
Q 003515 774 VVKCDEETAY 783 (814)
Q Consensus 774 ~L~l~~~~~~ 783 (814)
.|++.++...
T Consensus 254 ~L~l~~n~i~ 263 (319)
T cd00116 254 TLSLSCNDIT 263 (319)
T ss_pred EEEccCCCCC
Confidence 9999887653
No 25
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=99.13 E-value=1.9e-09 Score=97.70 Aligned_cols=143 Identities=43% Similarity=0.748 Sum_probs=132.6
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHhhhccCCC-hhHHHHHHHHHHhhHH
Q 003515 1 MAVAFVGGALLGAVFGELLRAVSEAKDKAVMFKDLLEQLESTLQNSTPMIKEIEKLNQVLDLP-KHETDTLIEMMRRGEH 79 (814)
Q Consensus 1 MA~~~v~~a~~~~v~~kl~~~l~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~ae~~~~~~~~~-~~wl~~l~~~~~d~ed 79 (814)
|++++|+||+++++++.+...+.+..+....++.-+++|..+++.|..++++.+..+...+.. +..+++|.+.+.+|++
T Consensus 1 ~~~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~ 80 (147)
T PF05659_consen 1 PIAELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKE 80 (147)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHH
Confidence 678889999999999999999999999999999999999999999999999999988776666 8999999999999999
Q ss_pred HhhhccCcc-ccccccchhHHHHHHHHhhhhhhhhccchhhhhhhhhHHHHHHHHHHHHHhhccc
Q 003515 80 LVHKCSRVK-WNCFKRYDYAKKIIKLDRSIDTFFRTYIPLQQTRDNRVIMVDLKEVHMMVKRLSG 143 (814)
Q Consensus 80 ~ld~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~ 143 (814)
++..|...+ |++++.+.|++++..+...+.+|++...+.+..++++++...+.++...++.+..
T Consensus 81 LV~k~sk~~r~n~~kk~~y~~Ki~~le~~l~~f~~v~~q~~~~~D~~~l~~~~~e~~~kl~~i~~ 145 (147)
T PF05659_consen 81 LVEKCSKVRRWNLYKKPRYARKIEELEESLRRFIQVDLQLHQLRDIKELLAKMSEMNTKLDDITR 145 (147)
T ss_pred HHHHhccccHHHHHhhHhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999998875 4888999999999999999999999999999999999999999999998887643
No 26
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.12 E-value=1.5e-08 Score=113.10 Aligned_cols=297 Identities=19% Similarity=0.216 Sum_probs=190.0
Q ss_pred CCCCCCCCCCCccchhHHHHHHHhh-CCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCC-CCHHHHHH
Q 003515 161 SAPDPPPVTPGLDVPLQELKLELFK-DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQT-PNVKGIVQ 238 (814)
Q Consensus 161 ~~~~~~~~~vGr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~-~~~~~~~~ 238 (814)
.+|..+...|-|. .+.+.|.. .+.+.+.|.-++|.|||||+.+.+. +....- .+.|.++++. .++..+..
T Consensus 13 ~~P~~~~~~v~R~----rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~--~~~~~~--~v~Wlslde~dndp~rF~~ 84 (894)
T COG2909 13 VRPVRPDNYVVRP----RLLDRLRRANDYRLILISAPAGFGKTTLLAQWRE--LAADGA--AVAWLSLDESDNDPARFLS 84 (894)
T ss_pred CCCCCcccccccH----HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHH--hcCccc--ceeEeecCCccCCHHHHHH
Confidence 3444455666665 44555553 4689999999999999999999875 333333 3779999764 56888888
Q ss_pred HHHHHhCCCCCCCCChHH----------HHHHHHHHhccc--CCCcEEEEEeCCCCCchH----HHhhh-cccCCCeEEE
Q 003515 239 KVYQHKGYAVPEFQTDED----------AINDLERLLKPI--RPEAILLVLDDVWSGSES----LLQKF-KFQLPYYKIL 301 (814)
Q Consensus 239 ~i~~~l~~~~~~~~~~~~----------~~~~l~~~l~~l--~~kr~LlVlDdv~~~~~~----~~~~~-~~~~~gs~ii 301 (814)
-++..++...+...+... ...-+..++..+ -.++..+||||-.-..+. -+..| ....++-.+|
T Consensus 85 yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lv 164 (894)
T COG2909 85 YLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLV 164 (894)
T ss_pred HHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEE
Confidence 888888755544322111 111222223222 246799999997543322 22222 3345688999
Q ss_pred EEccccccC-C------CCcccc----CCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHHHHHHhC
Q 003515 302 VTSRSVFPQ-F------GSGYDL----KPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGGSLC 370 (814)
Q Consensus 302 vTtR~~~~~-~------~~~~~l----~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~L~ 370 (814)
||||+...- . +...++ =.++.+|+-++|...... +-.+...+.+.+..+|-+-|+..++=.++
T Consensus 165 v~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l------~Ld~~~~~~L~~~teGW~~al~L~aLa~~ 238 (894)
T COG2909 165 VTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL------PLDAADLKALYDRTEGWAAALQLIALALR 238 (894)
T ss_pred EEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC------CCChHHHHHHHhhcccHHHHHHHHHHHcc
Confidence 999997321 1 113333 358899999999876422 22366789999999999999999998888
Q ss_pred CCC-hHHHHHHHHHHhccccccCChHHHHH-HHHHHHhhchHHHHHHHhHhCCCCCCcccCHHHHHHHHHHhhccchHHH
Q 003515 371 GKH-PAIWQKRVKEWTQDVSVFHSNKEILS-CLERSLDALNNEVKECYMDLCSFPEDQRIPITALVDMWMELYELVDELF 448 (814)
Q Consensus 371 ~~~-~~~w~~~l~~~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~k~cf~~ls~fp~~~~i~~~~Li~~W~a~~~~~~~~~ 448 (814)
+.+ .+. .+..+. ...+.+.. ...--++.||+++|..++-||+++. |. ..|+..- ...+.
T Consensus 239 ~~~~~~q---~~~~Ls------G~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~---f~-~eL~~~L------tg~~n 299 (894)
T COG2909 239 NNTSAEQ---SLRGLS------GAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR---FN-DELCNAL------TGEEN 299 (894)
T ss_pred CCCcHHH---Hhhhcc------chHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH---hh-HHHHHHH------hcCCc
Confidence 433 332 121111 01222222 3345678999999999999999865 11 2333321 11136
Q ss_pred HHHHHHhhhhhhhhhhhhhcccCCCCCCccchhhhhhHHHHHHHHHhhccC
Q 003515 449 AIANLHELSNLNLANCVATRKYASDDSCYNDHFVMQHDLLRELAIYQSTLE 499 (814)
Q Consensus 449 ~~~~l~~L~~rsll~~~~~~~~~~~~~~~~~~~~~mHdlv~d~a~~~~~~e 499 (814)
+...+++|-+++|+-.. ...+...|+.|.++.||-+.....+
T Consensus 300 g~amLe~L~~~gLFl~~---------Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 300 GQAMLEELERRGLFLQR---------LDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred HHHHHHHHHhCCCceee---------ecCCCceeehhHHHHHHHHhhhccc
Confidence 77889999999997631 1345678999999999987655443
No 27
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.07 E-value=5.7e-10 Score=113.47 Aligned_cols=189 Identities=21% Similarity=0.260 Sum_probs=99.7
Q ss_pred CCCccchhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhhc-cCCCcEEEEEecCCCCHHHHHHH--------
Q 003515 169 TPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLG-KFKDNIFFVTVSQTPNVKGIVQK-------- 239 (814)
Q Consensus 169 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~~wv~v~~~~~~~~~~~~-------- 239 (814)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++.+.+ .... .+. ++|+...+..........
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~~--~~y~~~~~~~~~~~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFIN--ELKEKGYK--VVYIDFLEESNESSLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHH--HCT--EEC--CCHHCCTTBSHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHH--HhhhcCCc--EEEEecccchhhhHHHHHHHHHHHHH
Confidence 799999999999999877788999999999999999999998 3322 222 335555444332221111
Q ss_pred -HHHHhCCCCCC----------CCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc------hHHHhh----hcc---cC
Q 003515 240 -VYQHKGYAVPE----------FQTDEDAINDLERLLKPIRPEAILLVLDDVWSGS------ESLLQK----FKF---QL 295 (814)
Q Consensus 240 -i~~~l~~~~~~----------~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~------~~~~~~----~~~---~~ 295 (814)
+.+.+....+. ..........+.+.+.. .+++.+||+||+.... ..+... +.. ..
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 155 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKK-KGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQ 155 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHH-CHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----T
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHh-cCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccC
Confidence 11112111100 01112223333333311 3455999999985433 121111 111 22
Q ss_pred CCeEEEEEccccc--c---------CCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHH
Q 003515 296 PYYKILVTSRSVF--P---------QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTV 364 (814)
Q Consensus 296 ~gs~iivTtR~~~--~---------~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 364 (814)
+.+.|+++|.... . .....+.+++|+.+++++++....... ... +..++..++|...+||+|..|..
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 3345555554321 0 111158999999999999999865333 111 12366779999999999998764
No 28
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.06 E-value=1.7e-11 Score=136.30 Aligned_cols=126 Identities=17% Similarity=0.300 Sum_probs=101.0
Q ss_pred CCCccEEEeecCCCCCCCchhccCCCCcCEeecccCCCCCCCc-cccCCCCCCCEEeccCCCCCCccchhhcCCCCCCEE
Q 003515 674 IVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALP-DTIGNLSNLNFLDISECLNIQELPERIGELCSLKTL 752 (814)
Q Consensus 674 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp-~~l~~L~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L 752 (814)
+..|+.|++.+|.+....-+-+.++.+|+.|+|+.|+ ++.+| ..+.+|..|++|+++|| .+..+|..+.+++.|++|
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTL 435 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHH
Confidence 4568888888888777666668889999999999975 56777 46788899999999998 688999999999999999
Q ss_pred eccCCCCCCcChhhhcCCCCCEEEcCCchhhhhHhhhhcCC--CcEEEeeccc
Q 003515 753 CLKGCSMFELPSSILNLENLEVVKCDEETAYQWEYFQLGQA--KFRIEVIQED 803 (814)
Q Consensus 753 ~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~--~l~i~~~~~~ 803 (814)
...+|.+..+| .+.+++.|+.+|++.|...... ++.+.| +|+-.+..++
T Consensus 436 ~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~-l~~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 436 RAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVT-LPEALPSPNLKYLDLSGN 486 (1081)
T ss_pred hhcCCceeech-hhhhcCcceEEecccchhhhhh-hhhhCCCcccceeeccCC
Confidence 99999999998 8999999999999988776643 222244 6665555443
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.06 E-value=1.6e-11 Score=123.95 Aligned_cols=246 Identities=14% Similarity=0.118 Sum_probs=133.3
Q ss_pred eEEEEEeccCCCCCCChhcCCCCCCcEEEeecccccCcccccccccCCCCCCCEEEec-CCCCCCcccccccc---cccc
Q 003515 553 VKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLE-HVSLPSLTTVRMKH---LQNV 628 (814)
Q Consensus 553 ~~~l~l~~~~~~~~~p~~l~~l~~Lr~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~-~n~l~~~~~~~l~~---L~~L 628 (814)
...+.|+-+....--|.+|+.+++||.|+++.|++.--.... |..+++|.+|-+. +|+|+.++...|.. |+.|
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~A---F~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDA---FKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHh---hhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 344455555444444556777777777777776432111111 3455555444443 36666664443433 3334
Q ss_pred ceecccccccccCcccccccCCCCccEEecccCcCcCcCCc-cccCCCCccEEEeecCCCC------------CCCchhc
Q 003515 629 SLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPD-GLCDIVSIKKLRITNCHKL------------SALPEGI 695 (814)
Q Consensus 629 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~------------~~lp~~~ 695 (814)
.+..|++.-.... .+..+++|..|.+..|.+ ..++. .+..+..++.+.+..|.++ ...|..+
T Consensus 146 llNan~i~Cir~~----al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet 220 (498)
T KOG4237|consen 146 LLNANHINCIRQD----ALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET 220 (498)
T ss_pred hcChhhhcchhHH----HHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence 4443433332222 222566666667766653 33444 4566666666666555421 1112222
Q ss_pred cCCCCcCEeec-------------------------ccCCCCCCCc-cccCCCCCCCEEeccCCCCCCccchhhcCCCCC
Q 003515 696 GKLVNLQMLTL-------------------------ASCTDLSALP-DTIGNLSNLNFLDISECLNIQELPERIGELCSL 749 (814)
Q Consensus 696 ~~l~~L~~L~L-------------------------~~~~~~~~lp-~~l~~L~~L~~L~l~~~~~~~~lp~~l~~l~~L 749 (814)
+.+.-..-..+ +.|......| ..+..|++|+.|++++|.....-+.++..+..+
T Consensus 221 sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l 300 (498)
T KOG4237|consen 221 SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL 300 (498)
T ss_pred ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhh
Confidence 22111111111 1111122233 346788999999999987666667778888899
Q ss_pred CEEeccCCCCCCcCh-hhhcCCCCCEEEcCCchhhh--hHhhhhcCCCcE-EEeeccccccc
Q 003515 750 KTLCLKGCSMFELPS-SILNLENLEVVKCDEETAYQ--WEYFQLGQAKFR-IEVIQEDINLY 807 (814)
Q Consensus 750 ~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~--~~~~~~~l~~l~-i~~~~~~~~l~ 807 (814)
++|.|..|++..+-. .+..+.+|+.|++.+|+... |..|.+ +..|. +....|++++|
T Consensus 301 ~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~-~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 301 QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQT-LFSLSTLNLLSNPFNCN 361 (498)
T ss_pred hhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccc-cceeeeeehccCcccCc
Confidence 999999998876544 45788899999998887765 344433 22222 44445544443
No 30
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.05 E-value=7e-10 Score=127.50 Aligned_cols=125 Identities=20% Similarity=0.173 Sum_probs=93.5
Q ss_pred ccccccceecccccccccCcccccccCCCCccEEecccCcCcCcCCccccCCCCccEEEeecCCCCCCCchhccCCCCcC
Q 003515 623 KHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQ 702 (814)
Q Consensus 623 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 702 (814)
.+|+.|++++|.+..++. ..++|+.|++++|.+. .+|.. +.+|+.|++++|.+ ..+|.. .++|+
T Consensus 342 ~~Lq~LdLS~N~Ls~LP~--------lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~L-t~LP~l---~s~L~ 405 (788)
T PRK15387 342 SGLQELSVSDNQLASLPT--------LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRL-TSLPVL---PSELK 405 (788)
T ss_pred cccceEecCCCccCCCCC--------CCcccceehhhccccc-cCccc---ccccceEEecCCcc-cCCCCc---ccCCC
Confidence 356777777766554322 2357889999998755 57764 35799999999874 457753 46899
Q ss_pred EeecccCCCCCCCccccCCCCCCCEEeccCCCCCCccchhhcCCCCCCEEeccCCCCC-CcChhhhc
Q 003515 703 MLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMF-ELPSSILN 768 (814)
Q Consensus 703 ~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~-~lp~~l~~ 768 (814)
.|++++|.. ..+|.. ..+|+.|++++|. +..+|..++++++|+.|++++|+++ ..|..+.+
T Consensus 406 ~LdLS~N~L-ssIP~l---~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 406 ELMVSGNRL-TSLPML---PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred EEEccCCcC-CCCCcc---hhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 999999874 568864 3578889999985 6789999999999999999999988 44444533
No 31
>COG3903 Predicted ATPase [General function prediction only]
Probab=99.04 E-value=1.9e-09 Score=111.19 Aligned_cols=287 Identities=19% Similarity=0.201 Sum_probs=197.4
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhc
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLK 266 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 266 (814)
..+.+.++|.|||||||++-.+.. ++..|+.++.++......+...+.-.+...++....+ .+.....+...
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~-- 84 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRR-- 84 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHH--
Confidence 357899999999999999998875 7778998887777777777777777777777765432 22223233333
Q ss_pred ccCCCcEEEEEeCCCCCch---HHHhhhcccCCCeEEEEEccccccCCCC-ccccCCCCHH-HHHHHHHHHcccCCCC--
Q 003515 267 PIRPEAILLVLDDVWSGSE---SLLQKFKFQLPYYKILVTSRSVFPQFGS-GYDLKPLNDE-AARTLFRYSANLQDGN-- 339 (814)
Q Consensus 267 ~l~~kr~LlVlDdv~~~~~---~~~~~~~~~~~gs~iivTtR~~~~~~~~-~~~l~~L~~~-~~~~Lf~~~a~~~~~~-- 339 (814)
+.++|.++|+||.....+ .....+..+.+.-.|+.|+|......+. .+.+++|+.. ++.++|...+......
T Consensus 85 -~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~ 163 (414)
T COG3903 85 -IGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFW 163 (414)
T ss_pred -HhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhcccee
Confidence 378999999999743322 1344455566677899999988655444 7788888876 6999998776443322
Q ss_pred CCCCChHHHHHHHHHcCCchhHHHHHHHHhCCCChHHHHHHHHH----Hhcc-ccccCChHHHHHHHHHHHhhchHHHHH
Q 003515 340 SYIPDENLVNKILRACKGCPLALTVVGGSLCGKHPAIWQKRVKE----WTQD-VSVFHSNKEILSCLERSLDALNNEVKE 414 (814)
Q Consensus 340 ~~~~~~~~~~~i~~~~~g~Plai~~~~~~L~~~~~~~w~~~l~~----~~~~-~~~~~~~~~i~~~l~~sy~~L~~~~k~ 414 (814)
-.......+.+|+++.+|.|++|...++..+......-...+++ +... .............+.+||.-|....+.
T Consensus 164 l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~ 243 (414)
T COG3903 164 LTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERA 243 (414)
T ss_pred ecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHH
Confidence 22334678999999999999999999999987654443333332 2111 111113346788999999999999999
Q ss_pred HHhHhCCCCCCcccCHHHHHHHHHHhhccc--hHHHHHHHHHhhhhhhhhhhhhhcccCCCCCCccchhhhhhHHHHHHH
Q 003515 415 CYMDLCSFPEDQRIPITALVDMWMELYELV--DELFAIANLHELSNLNLANCVATRKYASDDSCYNDHFVMQHDLLRELA 492 (814)
Q Consensus 415 cf~~ls~fp~~~~i~~~~Li~~W~a~~~~~--~~~~~~~~l~~L~~rsll~~~~~~~~~~~~~~~~~~~~~mHdlv~d~a 492 (814)
-|..++.|...+.-. ...|.+.|... +.......+..+++++++.... ......|+.-+-.+.++
T Consensus 244 ~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~---------~~~~a~~Rl~eT~r~Ya 310 (414)
T COG3903 244 LFGRLAVFVGGFDLG----LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALD---------LLGRARYRLLETGRRYA 310 (414)
T ss_pred Hhcchhhhhhhhccc----HHHHHhcCCccccchHHHHHHHHHHhhccchhhhh---------hhhHHHHHHHHHHHHHH
Confidence 999999998877544 34566544432 2245667778888999877533 23445677777777776
Q ss_pred HHh
Q 003515 493 IYQ 495 (814)
Q Consensus 493 ~~~ 495 (814)
..+
T Consensus 311 lae 313 (414)
T COG3903 311 LAE 313 (414)
T ss_pred HHH
Confidence 544
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=5.1e-11 Score=122.05 Aligned_cols=38 Identities=26% Similarity=0.500 Sum_probs=16.9
Q ss_pred CCCCCCCEEEecCCCCCCc----cccccccccccceeccccc
Q 003515 599 GALSNLKRIRLEHVSLPSL----TTVRMKHLQNVSLVMCNVD 636 (814)
Q Consensus 599 ~~l~~L~~L~l~~n~l~~~----~~~~l~~L~~L~l~~~~~~ 636 (814)
..|++|+.|+|+.|.+... ....+++|+.|.++.|+++
T Consensus 169 eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls 210 (505)
T KOG3207|consen 169 EQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLS 210 (505)
T ss_pred HhcccchhcccccccccCCccccchhhhhhhheEEeccCCCC
Confidence 4445555555555544322 2223444555555554443
No 33
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.99 E-value=1.4e-08 Score=107.62 Aligned_cols=265 Identities=13% Similarity=0.072 Sum_probs=143.6
Q ss_pred CCCCCccchhHHHHHHHhh-----CCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHH
Q 003515 167 PVTPGLDVPLQELKLELFK-----DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVY 241 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~ 241 (814)
..|||++..+++|..++.. .....+.++|++|+|||+||+.+++ ..... ...+..+.......+ ...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~--~~~~~----~~~~~~~~~~~~~~l-~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIAN--EMGVN----LKITSGPALEKPGDL-AAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCC----EEEeccchhcCchhH-HHHH
Confidence 3589999999999888862 3355688999999999999999987 33322 222222211122222 2222
Q ss_pred HHhCCCC----CCCCC-hHHHHHHHHHHhcccCCCcEEEEEeCCCCCchHHHhhhccc-CCCeEEEEEcccccc------
Q 003515 242 QHKGYAV----PEFQT-DEDAINDLERLLKPIRPEAILLVLDDVWSGSESLLQKFKFQ-LPYYKILVTSRSVFP------ 309 (814)
Q Consensus 242 ~~l~~~~----~~~~~-~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~~~~~~~~~~~-~~gs~iivTtR~~~~------ 309 (814)
..++... ++... .....+.+.. .+.+.+..+|+|+...... +... .+.+-|..||+....
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~---~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYP---AMEDFRLDIVIGKGPSARS-----VRLDLPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhH---HHhhhheeeeeccCccccc-----eeecCCCeEEEEecCCccccCHHHHh
Confidence 2222111 00000 0111122222 2244445566665433211 1111 224555566665421
Q ss_pred CCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHHHHHHhCCCChHHHHHHHHHHhcccc
Q 003515 310 QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGGSLCGKHPAIWQKRVKEWTQDVS 389 (814)
Q Consensus 310 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~L~~~~~~~w~~~l~~~~~~~~ 389 (814)
..+..+.+++++.++..+++.+.+..... .-.++....|++.|+|.|..+..++..+ |... .......
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~---~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a--~~~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNV---EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFA--QVRGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHH--HHcCCCC
Confidence 12346789999999999999987754322 1236778899999999997665555432 1100 0000000
Q ss_pred cc-CChHHHHHHHHHHHhhchHHHHHHHh-HhCCCCCCcccCHHHHHHHHHHhhccchHHHHHHHHH-hhhhhhhhhh
Q 003515 390 VF-HSNKEILSCLERSLDALNNEVKECYM-DLCSFPEDQRIPITALVDMWMELYELVDELFAIANLH-ELSNLNLANC 464 (814)
Q Consensus 390 ~~-~~~~~i~~~l~~sy~~L~~~~k~cf~-~ls~fp~~~~i~~~~Li~~W~a~~~~~~~~~~~~~l~-~L~~rsll~~ 464 (814)
.. ..-......+...|..|+++.+..+. .++.++.+ .+..+.+.... ..+. ..++..++ .|++++|++.
T Consensus 217 it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l----g~~~-~~~~~~~e~~Li~~~li~~ 288 (305)
T TIGR00635 217 INRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL----GEDA-DTIEDVYEPYLLQIGFLQR 288 (305)
T ss_pred cCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh----CCCc-chHHHhhhHHHHHcCCccc
Confidence 00 00012222345567788888777666 55667544 45555444332 1122 36777788 6999999973
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.94 E-value=8.7e-11 Score=124.00 Aligned_cols=169 Identities=25% Similarity=0.407 Sum_probs=134.7
Q ss_pred CCEEEecCCCCCCc--cccccccccccceecccccccccCcccccccCCCCccEEecccCcCcCcCCccccCCCCccEEE
Q 003515 604 LKRIRLEHVSLPSL--TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLR 681 (814)
Q Consensus 604 L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 681 (814)
-...+++.|.+..+ ....|..|..|.+..|.+........ .+..|.+|+|+.|+ +..+|..++.|+ |+.|-
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~-----~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAIC-----NLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLI 149 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhh-----hhhHHHHhhhccch-hhcCChhhhcCc-ceeEE
Confidence 34567788888777 34456778888888776655444332 67788999999887 557888888877 88888
Q ss_pred eecCCCCCCCchhccCCCCcCEeecccCCCCCCCccccCCCCCCCEEeccCCCCCCccchhhcCCCCCCEEeccCCCCCC
Q 003515 682 ITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFE 761 (814)
Q Consensus 682 l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~ 761 (814)
+++|. ++.+|..++.+..|..|+.+.|. +..+|..++++.+|+.|++..| .+..+|.++..|+ |..||++.|+++.
T Consensus 150 ~sNNk-l~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn-~l~~lp~El~~Lp-Li~lDfScNkis~ 225 (722)
T KOG0532|consen 150 VSNNK-LTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRN-HLEDLPEELCSLP-LIRLDFSCNKISY 225 (722)
T ss_pred EecCc-cccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhh-hhhhCCHHHhCCc-eeeeecccCceee
Confidence 88754 78889889988899999998864 6788888999999999999887 4678888888664 8899999999999
Q ss_pred cChhhhcCCCCCEEEcCCchhh
Q 003515 762 LPSSILNLENLEVVKCDEETAY 783 (814)
Q Consensus 762 lp~~l~~l~~L~~L~l~~~~~~ 783 (814)
||..+.+|+.|++|-+++|-.+
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred cchhhhhhhhheeeeeccCCCC
Confidence 9999999999999998887544
No 35
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.91 E-value=4.4e-08 Score=104.44 Aligned_cols=267 Identities=15% Similarity=0.101 Sum_probs=143.6
Q ss_pred CCCCCCCccchhHHHHHHHhh-----CCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHH
Q 003515 165 PPPVTPGLDVPLQELKLELFK-----DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQK 239 (814)
Q Consensus 165 ~~~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~ 239 (814)
.-++|+|++..++.+..++.. ...+.+.|+|++|+|||+||+.+++ ..... +.++..+. ......+..
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~--~l~~~----~~~~~~~~-~~~~~~l~~ 95 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIAN--EMGVN----IRITSGPA-LEKPGDLAA 95 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHH--HhCCC----eEEEeccc-ccChHHHHH
Confidence 345789999999998877762 2356788999999999999999998 33322 22222221 111112222
Q ss_pred HHHHhCCCCC----CCCC-hHHHHHHHHHHhcccCCCcEEEEEeCCCCCchHHHhhhcccCC-CeEEEEEccccccC---
Q 003515 240 VYQHKGYAVP----EFQT-DEDAINDLERLLKPIRPEAILLVLDDVWSGSESLLQKFKFQLP-YYKILVTSRSVFPQ--- 310 (814)
Q Consensus 240 i~~~l~~~~~----~~~~-~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~-gs~iivTtR~~~~~--- 310 (814)
++..++...- +... .....+.+... +.+.+..+|+|+...... .....+ .+-|..|++.....
T Consensus 96 ~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~---~e~~~~~~~l~~~~~~~~-----~~~~l~~~~li~at~~~~~l~~~L 167 (328)
T PRK00080 96 ILTNLEEGDVLFIDEIHRLSPVVEEILYPA---MEDFRLDIMIGKGPAARS-----IRLDLPPFTLIGATTRAGLLTSPL 167 (328)
T ss_pred HHHhcccCCEEEEecHhhcchHHHHHHHHH---HHhcceeeeeccCccccc-----eeecCCCceEEeecCCcccCCHHH
Confidence 2222211100 0000 00011111111 123333444444322110 011112 34455666644211
Q ss_pred ---CCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHHHHHHhCCCChHHHHHHHHHHhcc
Q 003515 311 ---FGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGGSLCGKHPAIWQKRVKEWTQD 387 (814)
Q Consensus 311 ---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~L~~~~~~~w~~~l~~~~~~ 387 (814)
.+..+++++++.++..+++.+.+..... .-.++....|++.|+|.|-.+..+...+ ..|. ... ..
T Consensus 168 ~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~---~~~~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a-~~~---~~ 235 (328)
T PRK00080 168 RDRFGIVQRLEFYTVEELEKIVKRSARILGV---EIDEEGALEIARRSRGTPRIANRLLRRV-----RDFA-QVK---GD 235 (328)
T ss_pred HHhcCeeeecCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHcCCCchHHHHHHHHH-----HHHH-HHc---CC
Confidence 3446899999999999999988755332 1236789999999999996555544432 1221 110 00
Q ss_pred cccc-CChHHHHHHHHHHHhhchHHHHHHHh-HhCCCCCCcccCHHHHHHHHHHhhccchHHHHHHHHH-hhhhhhhhhh
Q 003515 388 VSVF-HSNKEILSCLERSLDALNNEVKECYM-DLCSFPEDQRIPITALVDMWMELYELVDELFAIANLH-ELSNLNLANC 464 (814)
Q Consensus 388 ~~~~-~~~~~i~~~l~~sy~~L~~~~k~cf~-~ls~fp~~~~i~~~~Li~~W~a~~~~~~~~~~~~~l~-~L~~rsll~~ 464 (814)
..+. ..-......+...+..|++..+..+. ....|+.+ .+..+.+.... -.+...+++.++ .|++.+|++.
T Consensus 236 ~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l-----g~~~~~~~~~~e~~Li~~~li~~ 309 (328)
T PRK00080 236 GVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL-----GEERDTIEDVYEPYLIQQGFIQR 309 (328)
T ss_pred CCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH-----CCCcchHHHHhhHHHHHcCCccc
Confidence 0000 01112334455667788888777775 66778766 46666654432 112246677777 8999999974
No 36
>PF05729 NACHT: NACHT domain
Probab=98.90 E-value=9e-09 Score=98.36 Aligned_cols=136 Identities=24% Similarity=0.344 Sum_probs=85.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhhchhhhcc----CCCcEEEEEecCCCCHH---HHHHHHHHHhCCCCCCCCChHHHHHHH
Q 003515 189 QVIVVSAPGGYGKTTLVKKLCKDDQVLGK----FKDNIFFVTVSQTPNVK---GIVQKVYQHKGYAVPEFQTDEDAINDL 261 (814)
Q Consensus 189 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~~wv~v~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l 261 (814)
+++.|+|.+|+||||+++.++.+-..... +.. ++|+..++..... .+...+......... .....+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------~~~~~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPY-PFFFSLRDISDSNNSRSLADLLFDQLPESIA------PIEELL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceE-EEEEeehhhhhccccchHHHHHHHhhccchh------hhHHHH
Confidence 57899999999999999999874333332 233 6677776544332 344444444332211 111122
Q ss_pred HHHhcccCCCcEEEEEeCCCCCch-----------HHHhhhccc--CCCeEEEEEcccccc-------CCCCccccCCCC
Q 003515 262 ERLLKPIRPEAILLVLDDVWSGSE-----------SLLQKFKFQ--LPYYKILVTSRSVFP-------QFGSGYDLKPLN 321 (814)
Q Consensus 262 ~~~l~~l~~kr~LlVlDdv~~~~~-----------~~~~~~~~~--~~gs~iivTtR~~~~-------~~~~~~~l~~L~ 321 (814)
...++ +.++++||+|++++... .++..+... .++++++||+|.... .....+.+.+|+
T Consensus 74 ~~~~~--~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 74 QELLE--KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HHHHH--cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 22222 67899999999865432 123333333 568999999998632 122368999999
Q ss_pred HHHHHHHHHHHc
Q 003515 322 DEAARTLFRYSA 333 (814)
Q Consensus 322 ~~~~~~Lf~~~a 333 (814)
+++..+++.++.
T Consensus 152 ~~~~~~~~~~~f 163 (166)
T PF05729_consen 152 EEDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999997754
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.86 E-value=3.8e-10 Score=112.81 Aligned_cols=245 Identities=16% Similarity=0.169 Sum_probs=171.6
Q ss_pred ceEEEEEeccCCCC----CCChhcCCCCCCcEEEeecc--cc----cCcccccc-cccCCCCCCCEEEecCCCCCCc---
Q 003515 552 EVKVVVLNVRTKKY----TLPKFLEKMDKLKVMIVTNY--GF----FPAELSNI-QVFGALSNLKRIRLEHVSLPSL--- 617 (814)
Q Consensus 552 ~~~~l~l~~~~~~~----~~p~~l~~l~~Lr~L~l~~~--~~----~~~~~~~l-~~l~~l~~L~~L~l~~n~l~~~--- 617 (814)
.++.+.|+.++... .+.+.+.+.+.|+..++++. |. +|..+..| +.+..++.|++|+||+|.|..-
T Consensus 31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~ 110 (382)
T KOG1909|consen 31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR 110 (382)
T ss_pred ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH
Confidence 34444444443321 24566778889999998873 22 44444333 3467778999999999987543
Q ss_pred ----cccccccccccceecccccccccCc---------ccccccCCCCccEEecccCcCcCc----CCccccCCCCccEE
Q 003515 618 ----TTVRMKHLQNVSLVMCNVDQVVQNS---------TFHFSDAFPNLLEIDIDYCNDLIE----LPDGLCDIVSIKKL 680 (814)
Q Consensus 618 ----~~~~l~~L~~L~l~~~~~~~~~~~~---------~~~~~~~l~~L~~L~L~~~~~~~~----lp~~i~~l~~L~~L 680 (814)
....+..|+.|.+.+|++...-+.. ...-...-+.|+++..++|.+... +...+...+.|+.+
T Consensus 111 ~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leev 190 (382)
T KOG1909|consen 111 GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEV 190 (382)
T ss_pred HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceE
Confidence 2335788999999999887654333 112223557899999999875432 34456777899999
Q ss_pred EeecCCCCCC----CchhccCCCCcCEeecccCCCCC----CCccccCCCCCCCEEeccCCCCCCccchhh-----cCCC
Q 003515 681 RITNCHKLSA----LPEGIGKLVNLQMLTLASCTDLS----ALPDTIGNLSNLNFLDISECLNIQELPERI-----GELC 747 (814)
Q Consensus 681 ~l~~~~~~~~----lp~~~~~l~~L~~L~L~~~~~~~----~lp~~l~~L~~L~~L~l~~~~~~~~lp~~l-----~~l~ 747 (814)
.++.|.+... +...+..+++|+.|+|++|++.. .+...+..+++|+.|++++|.....-...+ ...+
T Consensus 191 r~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p 270 (382)
T KOG1909|consen 191 RLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAP 270 (382)
T ss_pred EEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCC
Confidence 9999875432 34567789999999999998754 244567778899999999997655433222 3578
Q ss_pred CCCEEeccCCCCC-----CcChhhhcCCCCCEEEcCCchh----hhhHhhhhcCCCcE
Q 003515 748 SLKTLCLKGCSMF-----ELPSSILNLENLEVVKCDEETA----YQWEYFQLGQAKFR 796 (814)
Q Consensus 748 ~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~~~----~~~~~~~~~l~~l~ 796 (814)
+|+.|.+.+|.++ .+-..+...+.|..|++++|+. ..+..+...++..+
T Consensus 271 ~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~~~~~~~~ 328 (382)
T KOG1909|consen 271 SLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIASKFDTAH 328 (382)
T ss_pred CCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHHHhccccc
Confidence 9999999999987 2334567899999999999987 66777776565544
No 38
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.86 E-value=6.6e-07 Score=100.98 Aligned_cols=168 Identities=17% Similarity=0.192 Sum_probs=104.5
Q ss_pred CCCCCCccchhHHHHHHHhh----CC-cEEEEEEcCCCCCHHHHHHHHhhchhh---hccCC-CcEEEEEecCCCCHHHH
Q 003515 166 PPVTPGLDVPLQELKLELFK----DG-RQVIVVSAPGGYGKTTLVKKLCKDDQV---LGKFK-DNIFFVTVSQTPNVKGI 236 (814)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~----~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~F~-~~~~wv~v~~~~~~~~~ 236 (814)
|+.++||++|+++|...|.. .+ ..++.|+|.+|.|||++++.|.+.-.- ....+ ..+++|.+....+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 46789999999999888862 22 357789999999999999999873211 11222 33568887777788889
Q ss_pred HHHHHHHhCCCCCCCCChHHHHHHHHHHhccc---CCCcEEEEEeCCCCCc---hH-HHhhhcc-cCCCeEEEE--Eccc
Q 003515 237 VQKVYQHKGYAVPEFQTDEDAINDLERLLKPI---RPEAILLVLDDVWSGS---ES-LLQKFKF-QLPYYKILV--TSRS 306 (814)
Q Consensus 237 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~l---~~kr~LlVlDdv~~~~---~~-~~~~~~~-~~~gs~iiv--TtR~ 306 (814)
...|.+++....+. ........+..++..+ .+...+||||+++... ++ +...+.+ ...+++|++ +|..
T Consensus 834 YqvI~qqL~g~~P~--~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 834 YQVLYKQLFNKKPP--NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHcCCCCC--ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc
Confidence 99999888544332 1112223344444322 2334689999986432 22 3222322 234555444 3322
Q ss_pred c-c----------cCCCCccccCCCCHHHHHHHHHHHccc
Q 003515 307 V-F----------PQFGSGYDLKPLNDEAARTLFRYSANL 335 (814)
Q Consensus 307 ~-~----------~~~~~~~~l~~L~~~~~~~Lf~~~a~~ 335 (814)
. . ......+..++++.++-.+++..++..
T Consensus 912 lDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred hhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh
Confidence 1 0 111124667999999999999988753
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.81 E-value=8.7e-09 Score=118.89 Aligned_cols=107 Identities=13% Similarity=0.288 Sum_probs=96.2
Q ss_pred CccEEecccCcCcCcCCccccCCCCccEEEeecCCCCCCCchhccCCCCcCEeecccCCCCCCCccccCCCCCCCEEecc
Q 003515 652 NLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDIS 731 (814)
Q Consensus 652 ~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~ 731 (814)
.+..|+|++|.+.+.+|..++++++|+.|+|++|.+.+.+|..++.+++|+.|+|++|...+.+|..+++|++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999989999999999999999999999888999999999999999999999888999999999999999999
Q ss_pred CCCCCCccchhhcCC-CCCCEEeccCCC
Q 003515 732 ECLNIQELPERIGEL-CSLKTLCLKGCS 758 (814)
Q Consensus 732 ~~~~~~~lp~~l~~l-~~L~~L~l~~~~ 758 (814)
+|...+.+|..++.+ .++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 998888999888763 567788888887
No 40
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.81 E-value=2.6e-07 Score=109.45 Aligned_cols=306 Identities=18% Similarity=0.243 Sum_probs=174.2
Q ss_pred CCCccchhHHHHHHHh---hCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEe---cCCCC---HHHHHHH
Q 003515 169 TPGLDVPLQELKLELF---KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTV---SQTPN---VKGIVQK 239 (814)
Q Consensus 169 ~vGr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v---~~~~~---~~~~~~~ 239 (814)
++||+.+++.|...+. .....++.+.|..|||||+|+++|.. .+.+.+.. .+--.+ ..... ..+.+++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~-~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK--PITQQRGY-FIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH--HHhcccee-eeHhhcccccCCCchHHHHHHHHH
Confidence 6899999999998887 34467999999999999999999997 55544221 111111 11111 1122222
Q ss_pred HHHH-------------------hCCCCCC------------------CC--C--hHHHHH-HHHHHh--cccCCCcEEE
Q 003515 240 VYQH-------------------KGYAVPE------------------FQ--T--DEDAIN-DLERLL--KPIRPEAILL 275 (814)
Q Consensus 240 i~~~-------------------l~~~~~~------------------~~--~--~~~~~~-~l~~~l--~~l~~kr~Ll 275 (814)
++.+ ++..... .. . .....+ .+...+ -.-+.|+.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 2222 2211100 00 0 001111 122222 1225779999
Q ss_pred EEeCC-CCCchH--HHhhhcccCC-----CeEEE--EEccccc------cCCCCccccCCCCHHHHHHHHHHHcccCCCC
Q 003515 276 VLDDV-WSGSES--LLQKFKFQLP-----YYKIL--VTSRSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGN 339 (814)
Q Consensus 276 VlDdv-~~~~~~--~~~~~~~~~~-----gs~ii--vTtR~~~------~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 339 (814)
|+||+ |.+..+ ++..+....+ ...|. .|.+... ....+.+.+.||+..+...+.........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~-- 236 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK-- 236 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc--
Confidence 99999 544433 3333333222 11222 2333221 12224799999999999999987763322
Q ss_pred CCCCChHHHHHHHHHcCCchhHHHHHHHHhCCC-------ChHHHHHHHHHHhccccccCChHHHHHHHHHHHhhchHHH
Q 003515 340 SYIPDENLVNKILRACKGCPLALTVVGGSLCGK-------HPAIWQKRVKEWTQDVSVFHSNKEILSCLERSLDALNNEV 412 (814)
Q Consensus 340 ~~~~~~~~~~~i~~~~~g~Plai~~~~~~L~~~-------~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~ 412 (814)
....+..+.|.++..|+|+.+..+-..+... +...|...+..... ....+++...+..-.+.||...
T Consensus 237 --~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~----~~~~~~vv~~l~~rl~kL~~~t 310 (849)
T COG3899 237 --LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI----LATTDAVVEFLAARLQKLPGTT 310 (849)
T ss_pred --cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC----chhhHHHHHHHHHHHhcCCHHH
Confidence 2347789999999999999999988888653 24455433332221 1223346667899999999999
Q ss_pred HHHHhHhCCCCCCcccCHHHHHHHHHHhhccchHHHHHHHHHhhhhhhhhhhhhhcccCCCCCCccch-hhhhhHHHHHH
Q 003515 413 KECYMDLCSFPEDQRIPITALVDMWMELYELVDELFAIANLHELSNLNLANCVATRKYASDDSCYNDH-FVMQHDLLREL 491 (814)
Q Consensus 413 k~cf~~ls~fp~~~~i~~~~Li~~W~a~~~~~~~~~~~~~l~~L~~rsll~~~~~~~~~~~~~~~~~~-~~~mHdlv~d~ 491 (814)
|+.+...|++-. .|+...|...|-. . ....+....+.|....++-..+..... ...... |-..||.+++.
T Consensus 311 ~~Vl~~AA~iG~--~F~l~~La~l~~~---~-~~~~a~~l~~al~e~lI~~~~~~yr~~---~~~~~~~Y~F~H~~vqqa 381 (849)
T COG3899 311 REVLKAAACIGN--RFDLDTLAALAED---S-PALEAAALLDALQEGLILPLSETYRFG---SNVDIATYKFLHDRVQQA 381 (849)
T ss_pred HHHHHHHHHhCc--cCCHHHHHHHHhh---c-hHHHHHHHHHHhHhhceeccccccccc---cccchhhHHhhHHHHHHH
Confidence 999999999854 4556666665531 1 113445555555554444321110000 011111 33469999988
Q ss_pred HHH
Q 003515 492 AIY 494 (814)
Q Consensus 492 a~~ 494 (814)
|-.
T Consensus 382 aY~ 384 (849)
T COG3899 382 AYN 384 (849)
T ss_pred Hhc
Confidence 754
No 41
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.81 E-value=4.1e-10 Score=113.94 Aligned_cols=220 Identities=16% Similarity=0.193 Sum_probs=147.1
Q ss_pred CCCceEEEEEeccCCCCCCChhcCCCCCCcEEEeecccc---cCcccccccccCCCCCCCEEEecCCCCCCc---ccccc
Q 003515 549 EAPEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGF---FPAELSNIQVFGALSNLKRIRLEHVSLPSL---TTVRM 622 (814)
Q Consensus 549 ~~~~~~~l~l~~~~~~~~~p~~l~~l~~Lr~L~l~~~~~---~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~---~~~~l 622 (814)
..++++.+.|..+.....-|.+|..+..|-.|.+.+++. +|+.. |++|..|+.|.+.-|.+..+ ....+
T Consensus 89 ~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~-----F~gL~slqrLllNan~i~Cir~~al~dL 163 (498)
T KOG4237|consen 89 TLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA-----FGGLSSLQRLLLNANHINCIRQDALRDL 163 (498)
T ss_pred chhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH-----hhhHHHHHHHhcChhhhcchhHHHHHHh
Confidence 456777777777766677789999999999888877433 44443 78999999999999998877 44567
Q ss_pred ccccccceecccccccccCcccccccCCCCccEEecccCcCc------------CcCCccccCCCC--------------
Q 003515 623 KHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDL------------IELPDGLCDIVS-------------- 676 (814)
Q Consensus 623 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~------------~~lp~~i~~l~~-------------- 676 (814)
++|+-|.+.+|.+..+..... ..+..++.+++..|.+. ...|..++....
T Consensus 164 ~~l~lLslyDn~~q~i~~~tf----~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~ 239 (498)
T KOG4237|consen 164 PSLSLLSLYDNKIQSICKGTF----QGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQE 239 (498)
T ss_pred hhcchhcccchhhhhhccccc----cchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhccc
Confidence 778888888887766544333 25667777777666521 112222222111
Q ss_pred --------ccEE---EeecCCCCCCCc-hhccCCCCcCEeecccCCCCCCCccccCCCCCCCEEeccCCCCCCcc-chhh
Q 003515 677 --------IKKL---RITNCHKLSALP-EGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQEL-PERI 743 (814)
Q Consensus 677 --------L~~L---~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~l-p~~l 743 (814)
++.+ -.+.|.....-| ..|.+|++|++|+|++|.....-+..+..+..++.|.+..|. +..+ ...+
T Consensus 240 ~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f 318 (498)
T KOG4237|consen 240 DARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMF 318 (498)
T ss_pred chhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhh
Confidence 1111 111222233333 256788899999998887777777788888888888888874 3433 3446
Q ss_pred cCCCCCCEEeccCCCCCCc-ChhhhcCCCCCEEEcC
Q 003515 744 GELCSLKTLCLKGCSMFEL-PSSILNLENLEVVKCD 778 (814)
Q Consensus 744 ~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~ 778 (814)
..+..|++|+|++|.|+.+ |..+..+..|..|++-
T Consensus 319 ~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 319 QGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL 354 (498)
T ss_pred hccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence 7888888888888888844 5566777777777543
No 42
>PTZ00202 tuzin; Provisional
Probab=98.75 E-value=7.6e-06 Score=85.95 Aligned_cols=164 Identities=14% Similarity=0.115 Sum_probs=106.3
Q ss_pred ccCCCCCCCCCCCCccchhHHHHHHHhhC---CcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHH
Q 003515 158 GACSAPDPPPVTPGLDVPLQELKLELFKD---GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVK 234 (814)
Q Consensus 158 ~~~~~~~~~~~~vGr~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 234 (814)
...+.|..+..|+||++++.++...|.+. ..+++.|+|++|+|||||++.+.. ... +. .++++.. +..
T Consensus 253 ~~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~--~l~--~~--qL~vNpr---g~e 323 (550)
T PTZ00202 253 TLQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVR--KEG--MP--AVFVDVR---GTE 323 (550)
T ss_pred cccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHh--cCC--ce--EEEECCC---CHH
Confidence 34567778889999999999999888632 256899999999999999999986 222 22 3344333 679
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHhc---ccCCCcEEEEEeCCCCCc-h---HHHhhhcccCCCeEEEEEcccc
Q 003515 235 GIVQKVYQHKGYAVPEFQTDEDAINDLERLLK---PIRPEAILLVLDDVWSGS-E---SLLQKFKFQLPYYKILVTSRSV 307 (814)
Q Consensus 235 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~---~l~~kr~LlVlDdv~~~~-~---~~~~~~~~~~~gs~iivTtR~~ 307 (814)
+++..++.++|... .....+....+++.+. ..++++.+||+-==...+ . ...-.+...-.-|.|++---.+
T Consensus 324 ElLr~LL~ALGV~p--~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~drr~ch~v~evple 401 (550)
T PTZ00202 324 DTLRSVVKALGVPN--VEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALACDRRLCHVVIEVPLE 401 (550)
T ss_pred HHHHHHHHHcCCCC--cccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHccchhheeeeeehHh
Confidence 99999999999732 2233455666766662 123777777774211110 0 0112233333457777765544
Q ss_pred ccCCC-------CccccCCCCHHHHHHHHHHH
Q 003515 308 FPQFG-------SGYDLKPLNDEAARTLFRYS 332 (814)
Q Consensus 308 ~~~~~-------~~~~l~~L~~~~~~~Lf~~~ 332 (814)
...+. ..|-+++++.++|.+.-.+.
T Consensus 402 slt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 402 SLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 22211 16889999999998876553
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=3.7e-09 Score=108.67 Aligned_cols=204 Identities=17% Similarity=0.202 Sum_probs=150.4
Q ss_pred cCCCCCCcEEEeecccc--cCcccccccccCCCCCCCEEEecCCCCCCc-----cccccccccccceecccccccccCcc
Q 003515 571 LEKMDKLKVMIVTNYGF--FPAELSNIQVFGALSNLKRIRLEHVSLPSL-----TTVRMKHLQNVSLVMCNVDQVVQNST 643 (814)
Q Consensus 571 l~~l~~Lr~L~l~~~~~--~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~-----~~~~l~~L~~L~l~~~~~~~~~~~~~ 643 (814)
=+++++||.+.+.++.. .+.+ .....|++++.|+|+.|-+... ....+++|+.|+++.|.+...+....
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~----~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~ 192 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIE----EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT 192 (505)
T ss_pred hhhHHhhhheeecCccccccchh----hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc
Confidence 36789999999998633 3322 2357899999999999988776 45679999999999998776655433
Q ss_pred cccccCCCCccEEecccCcCcCc-CCccccCCCCccEEEeecCCCCCCCchhccCCCCcCEeecccCCCCCCCc--cccC
Q 003515 644 FHFSDAFPNLLEIDIDYCNDLIE-LPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALP--DTIG 720 (814)
Q Consensus 644 ~~~~~~l~~L~~L~L~~~~~~~~-lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp--~~l~ 720 (814)
. ..+++|+.|.|+.|++... +-.....+++|+.|++.+|..+..-..+..-++.|+.|+|++|+.. ..+ ..++
T Consensus 193 ~---~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~ 268 (505)
T KOG3207|consen 193 T---LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVG 268 (505)
T ss_pred h---hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccc
Confidence 2 2678999999999987633 2233456889999999998544333333455889999999997654 444 5678
Q ss_pred CCCCCCEEeccCCCCCC-ccchh-----hcCCCCCCEEeccCCCCCCcC--hhhhcCCCCCEEEcCCchh
Q 003515 721 NLSNLNFLDISECLNIQ-ELPER-----IGELCSLKTLCLKGCSMFELP--SSILNLENLEVVKCDEETA 782 (814)
Q Consensus 721 ~L~~L~~L~l~~~~~~~-~lp~~-----l~~l~~L~~L~l~~~~l~~lp--~~l~~l~~L~~L~l~~~~~ 782 (814)
.|+.|..|+++.|.... .+|+. ...+++|+.|++..|++.+.+ ..+..+++|+.|.|..+..
T Consensus 269 ~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 99999999999875432 34443 356889999999999987655 3567778888887765533
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.65 E-value=5.4e-08 Score=112.38 Aligned_cols=106 Identities=25% Similarity=0.382 Sum_probs=96.8
Q ss_pred CccEEEeecCCCCCCCchhccCCCCcCEeecccCCCCCCCccccCCCCCCCEEeccCCCCCCccchhhcCCCCCCEEecc
Q 003515 676 SIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLK 755 (814)
Q Consensus 676 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~ 755 (814)
.++.|+|++|.+.+.+|..++.+++|+.|+|++|...+.+|..++.+++|+.|++++|...+.+|..+++|++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 48899999999999999999999999999999999889999999999999999999999889999999999999999999
Q ss_pred CCCCC-CcChhhhcC-CCCCEEEcCCch
Q 003515 756 GCSMF-ELPSSILNL-ENLEVVKCDEET 781 (814)
Q Consensus 756 ~~~l~-~lp~~l~~l-~~L~~L~l~~~~ 781 (814)
+|.++ .+|..+..+ .++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 99988 899888764 466778887764
No 45
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.65 E-value=2.1e-07 Score=102.31 Aligned_cols=174 Identities=15% Similarity=0.143 Sum_probs=104.3
Q ss_pred CCCCCCccchhHH---HHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHH
Q 003515 166 PPVTPGLDVPLQE---LKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQ 242 (814)
Q Consensus 166 ~~~~vGr~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~ 242 (814)
-+++||++..+.. +..++.....+.+.++|++|+||||||+.+++ ..... |+.++......+-++.+++
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~--~~~~~------~~~l~a~~~~~~~ir~ii~ 82 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAG--ATDAP------FEALSAVTSGVKDLREVIE 82 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHH--HhCCC------EEEEecccccHHHHHHHHH
Confidence 3567898877665 77777777777888999999999999999987 33222 3333322111111122221
Q ss_pred HhCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchHHHhhhccc-CCCeEEEE--Eccccc-------cCCC
Q 003515 243 HKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSESLLQKFKFQ-LPYYKILV--TSRSVF-------PQFG 312 (814)
Q Consensus 243 ~l~~~~~~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~~~~~~~~~~~-~~gs~iiv--TtR~~~-------~~~~ 312 (814)
.. .... ..+++.+|++|+++.........+... ..|..++| ||.+.. ..-.
T Consensus 83 ~~-----------------~~~~--~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att~n~~~~l~~aL~SR~ 143 (413)
T PRK13342 83 EA-----------------RQRR--SAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRA 143 (413)
T ss_pred HH-----------------HHhh--hcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCCCChhhhccHHHhccc
Confidence 11 1101 146788999999987654433333221 23444444 344331 1112
Q ss_pred CccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHHHH
Q 003515 313 SGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVG 366 (814)
Q Consensus 313 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 366 (814)
..+.+.+++.++..+++.+.+.........-.++..+.|++.|+|.|..+..+.
T Consensus 144 ~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 144 QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 378999999999999998765331111101236778889999999997665433
No 46
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.64 E-value=2.2e-07 Score=95.45 Aligned_cols=167 Identities=17% Similarity=0.206 Sum_probs=101.7
Q ss_pred CCCCCccchh---HHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHH
Q 003515 167 PVTPGLDVPL---QELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQH 243 (814)
Q Consensus 167 ~~~vGr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~ 243 (814)
+++||.+.-+ .-|-.++....+.-.-.||++|+||||||+.+.. ..... +..++-..+-..-++.+++.
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~------f~~~sAv~~gvkdlr~i~e~ 95 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAG--TTNAA------FEALSAVTSGVKDLREIIEE 95 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHH--hhCCc------eEEeccccccHHHHHHHHHH
Confidence 4456644332 3344556677788888999999999999999987 33333 33444333322222333322
Q ss_pred hCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchHHHhhhccc-CCCeEEEE--EccccccC-------CCC
Q 003515 244 KGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSESLLQKFKFQ-LPYYKILV--TSRSVFPQ-------FGS 313 (814)
Q Consensus 244 l~~~~~~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~~~~~~~~~~~-~~gs~iiv--TtR~~~~~-------~~~ 313 (814)
. +. ....|++.+|++|.|..-....-+.|.+. ..|.-|+| ||-++... -..
T Consensus 96 a-----------------~~--~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~ 156 (436)
T COG2256 96 A-----------------RK--NRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRAR 156 (436)
T ss_pred H-----------------HH--HHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhh
Confidence 1 11 11158999999999977664444444433 45666665 56665322 223
Q ss_pred ccccCCCCHHHHHHHHHHHcccCCCC---CCCCC-hHHHHHHHHHcCCchh
Q 003515 314 GYDLKPLNDEAARTLFRYSANLQDGN---SYIPD-ENLVNKILRACKGCPL 360 (814)
Q Consensus 314 ~~~l~~L~~~~~~~Lf~~~a~~~~~~---~~~~~-~~~~~~i~~~~~g~Pl 360 (814)
++++++|+.++-.+++.+.+...... ..... ++....++..++|--.
T Consensus 157 vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 157 VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 89999999999999998843222211 11112 5577788999988654
No 47
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.60 E-value=4.4e-06 Score=94.19 Aligned_cols=188 Identities=15% Similarity=0.139 Sum_probs=108.7
Q ss_pred CCCCCccchhHHHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHH--
Q 003515 167 PVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQH-- 243 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~-- 243 (814)
+++||.+..++.|.+++..+. .+.+.++|..|+||||+|+.+.+.-.....+. . ..+..-.....|...
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~----~----~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT----S----QPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC----C----CCCcccHHHHHHhcCCC
Confidence 467999999999999988665 45678999999999999998876211111100 0 001100111111100
Q ss_pred ---hCCCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEccccccCC----
Q 003515 244 ---KGYAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVFPQF---- 311 (814)
Q Consensus 244 ---l~~~~~~~~~~~~~~~~l~~~l-~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~~~~---- 311 (814)
+..+.......++..+.+.... .-..++.-++|||++...... ++..+....+..++|+||++.....
T Consensus 88 ~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIr 167 (830)
T PRK07003 88 VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVL 167 (830)
T ss_pred ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhh
Confidence 0000000001111111111111 112456678999999876643 4444444455788888888763221
Q ss_pred --CCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCch-hHHHHH
Q 003515 312 --GSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCP-LALTVV 365 (814)
Q Consensus 312 --~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~ 365 (814)
...+.++.++.++..+.+.+.+...+. .-.++..+.|++.++|.. -|+..+
T Consensus 168 SRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI---~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 168 SRCLQFNLKQMPAGHIVSHLERILGEERI---AFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred hheEEEecCCcCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 227899999999999999887644332 113677889999999866 455543
No 48
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.60 E-value=3.7e-08 Score=108.59 Aligned_cols=169 Identities=26% Similarity=0.458 Sum_probs=77.9
Q ss_pred CCCCEEEecCCCCCCccc--cccc-cccccceecccccccccCcccccccCCCCccEEecccCcCcCcCCccccCCCCcc
Q 003515 602 SNLKRIRLEHVSLPSLTT--VRMK-HLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIK 678 (814)
Q Consensus 602 ~~L~~L~l~~n~l~~~~~--~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 678 (814)
+.+..|++.+|.+..+.. ..+. +|+.|++.++.+..+... ...+++|+.|+++.|+ ...+|...+.++.|+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-----~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~ 189 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-----LRNLPNLKNLDLSFND-LSDLPKLLSNLSNLN 189 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-----hhccccccccccCCch-hhhhhhhhhhhhhhh
Confidence 344444444444444421 1121 455555555444433211 1144555555555554 233444333455555
Q ss_pred EEEeecCCCCCCCchhccCCCCcCEeecccCCCCCCCccccCCCCCCCEEeccCCCCCCccchhhcCCCCCCEEeccCCC
Q 003515 679 KLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCS 758 (814)
Q Consensus 679 ~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 758 (814)
.|++++|. +..+|..++.+.+|++|.+++|. ....+..+.++.++..|.+.+| ....+|..++.+++|++|++++|.
T Consensus 190 ~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 190 NLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNN-KLEDLPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred heeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCc-eeeeccchhccccccceecccccc
Confidence 55555533 44455444444445555555542 2233444445555555554443 223334445555555555555555
Q ss_pred CCCcChhhhcCCCCCEEEcCCc
Q 003515 759 MFELPSSILNLENLEVVKCDEE 780 (814)
Q Consensus 759 l~~lp~~l~~l~~L~~L~l~~~ 780 (814)
++.++. ++.+.+|+.|+++++
T Consensus 267 i~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 267 ISSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred cccccc-ccccCccCEEeccCc
Confidence 555544 555555555555443
No 49
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.57 E-value=1.6e-06 Score=93.46 Aligned_cols=193 Identities=14% Similarity=0.137 Sum_probs=109.1
Q ss_pred CCCCCccchhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhhc-cCCCcEEEEEecCCCCHH-HHHH---HHH
Q 003515 167 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLG-KFKDNIFFVTVSQTPNVK-GIVQ---KVY 241 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~~wv~v~~~~~~~-~~~~---~i~ 241 (814)
+.++|++..++.+..++..+..+.+.++|++|+||||+|+.+++ .+.. .+......+++++..+.. ..+. ...
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~--~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAR--ELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFA 92 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHH--HhcCcccccceEEechhhhhhcchhhhhcCcchh
Confidence 56799999999999888876666788999999999999999987 3322 233334455543321100 0000 000
Q ss_pred HHhCCCCCCCCChHHHHHHHHHHh-c--ccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEccccc------
Q 003515 242 QHKGYAVPEFQTDEDAINDLERLL-K--PIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------ 308 (814)
Q Consensus 242 ~~l~~~~~~~~~~~~~~~~l~~~l-~--~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------ 308 (814)
..++..........+....+.+.. . ...+.+-+||+||+...... +...+....+.+++|+|+....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L 172 (337)
T PRK12402 93 HFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPI 172 (337)
T ss_pred hhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhh
Confidence 000000000000111112111111 1 11244568999999655432 2222333344577888775431
Q ss_pred cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHH
Q 003515 309 PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTV 364 (814)
Q Consensus 309 ~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 364 (814)
...+..+++.+++.++..+.+...+...+.. -..+..+.+++.++|.+-.+..
T Consensus 173 ~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~---~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 173 RSRCLPLFFRAPTDDELVDVLESIAEAEGVD---YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred cCCceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 1223368889999999998888766443321 1367888999999998755443
No 50
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.54 E-value=1.9e-06 Score=82.95 Aligned_cols=172 Identities=21% Similarity=0.270 Sum_probs=92.3
Q ss_pred CCCCCCCCCccchhHHHHHHHh-----hCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHH
Q 003515 163 PDPPPVTPGLDVPLQELKLELF-----KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIV 237 (814)
Q Consensus 163 ~~~~~~~vGr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~ 237 (814)
|..-++|||.+.-++.+.-++. .+...-+.+||++|+||||||.-+++ .....| .+++.+.....
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~----~~~sg~~i~k~---- 89 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNF----KITSGPAIEKA---- 89 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--E----EEEECCC--SC----
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCe----EeccchhhhhH----
Confidence 3344678999888887654444 23467789999999999999999998 444443 23332110011
Q ss_pred HHHHHHhCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhcc--------cCCC--------
Q 003515 238 QKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKF--------QLPY-------- 297 (814)
Q Consensus 238 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~~~----~~~~~~~--------~~~g-------- 297 (814)
..+...+..++ ++-+|++|++..-... +...... .+++
T Consensus 90 ---------------------~dl~~il~~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l 147 (233)
T PF05496_consen 90 ---------------------GDLAAILTNLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINL 147 (233)
T ss_dssp ---------------------HHHHHHHHT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE-
T ss_pred ---------------------HHHHHHHHhcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccC
Confidence 11222222222 3457888999765522 2222111 1111
Q ss_pred ---eEEEEEccccccC------CCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHHHHHH
Q 003515 298 ---YKILVTSRSVFPQ------FGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGGS 368 (814)
Q Consensus 298 ---s~iivTtR~~~~~------~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 368 (814)
+-|=.|||..... .+...+++..+.+|-.++..+.+..-+. .-.++.+.+|++.+.|-|--+.-+-+.
T Consensus 148 ~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i---~i~~~~~~~Ia~rsrGtPRiAnrll~r 224 (233)
T PF05496_consen 148 PPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI---EIDEDAAEEIARRSRGTPRIANRLLRR 224 (233)
T ss_dssp ---EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT----EE-HHHHHHHHHCTTTSHHHHHHHHHH
T ss_pred CCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHhcCCChHHHHHHHHH
Confidence 2344677776322 2235689999999999999887644332 123788999999999999765544443
Q ss_pred h
Q 003515 369 L 369 (814)
Q Consensus 369 L 369 (814)
.
T Consensus 225 v 225 (233)
T PF05496_consen 225 V 225 (233)
T ss_dssp H
T ss_pred H
Confidence 3
No 51
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.53 E-value=5.9e-08 Score=91.43 Aligned_cols=122 Identities=25% Similarity=0.344 Sum_probs=40.3
Q ss_pred CCccEEecccCcCcCcCCcccc-CCCCccEEEeecCCCCCCCchhccCCCCcCEeecccCCCCCCCcccc-CCCCCCCEE
Q 003515 651 PNLLEIDIDYCNDLIELPDGLC-DIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTI-GNLSNLNFL 728 (814)
Q Consensus 651 ~~L~~L~L~~~~~~~~lp~~i~-~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l-~~L~~L~~L 728 (814)
.+++.|+|.+|.+.. + +.++ .+.+|+.|++++|. +..++ .+..+++|++|++++|.. ..++..+ ..+++|+.|
T Consensus 19 ~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~N~I-~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSNNRI-SSISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccc-c-cchhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCCCCC-CccccchHHhCCcCCEE
Confidence 345556666654332 2 2243 35666677776655 33443 355666777777766543 3443333 246677777
Q ss_pred eccCCCCCCccc--hhhcCCCCCCEEeccCCCCCCcCh----hhhcCCCCCEEEcC
Q 003515 729 DISECLNIQELP--ERIGELCSLKTLCLKGCSMFELPS----SILNLENLEVVKCD 778 (814)
Q Consensus 729 ~l~~~~~~~~lp--~~l~~l~~L~~L~l~~~~l~~lp~----~l~~l~~L~~L~l~ 778 (814)
++++|.. ..+. ..+..+++|+.|++.+|+++.-+. .+..+|+|+.||-.
T Consensus 94 ~L~~N~I-~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 94 YLSNNKI-SDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ECcCCcC-CChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 7766633 2221 245667777777777777764432 45777888877643
No 52
>PRK06893 DNA replication initiation factor; Validated
Probab=98.52 E-value=2.3e-06 Score=85.97 Aligned_cols=144 Identities=17% Similarity=0.197 Sum_probs=88.5
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcc
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKP 267 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 267 (814)
.+.+.++|.+|+|||+|++++++ ........ +.|+++.... .... +.++.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~-~~y~~~~~~~---~~~~------------------------~~~~~ 88 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSN--HYLLNQRT-AIYIPLSKSQ---YFSP------------------------AVLEN 88 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCC-eEEeeHHHhh---hhhH------------------------HHHhh
Confidence 46789999999999999999998 34333333 5677763210 0000 11111
Q ss_pred cCCCcEEEEEeCCCCCc---hH---HHhhhccc-CCCeEEE-EEccccc-------------cCCCCccccCCCCHHHHH
Q 003515 268 IRPEAILLVLDDVWSGS---ES---LLQKFKFQ-LPYYKIL-VTSRSVF-------------PQFGSGYDLKPLNDEAAR 326 (814)
Q Consensus 268 l~~kr~LlVlDdv~~~~---~~---~~~~~~~~-~~gs~ii-vTtR~~~-------------~~~~~~~~l~~L~~~~~~ 326 (814)
+. +.-+|||||+|... ++ +...+... ..|..+| +|++... ...+..+++++++.++.+
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 12 23489999998642 11 22222221 2355554 4554421 123347899999999999
Q ss_pred HHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHHH
Q 003515 327 TLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVV 365 (814)
Q Consensus 327 ~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 365 (814)
+++.+.+...+. .-.+++..-|++.+.|..-.+..+
T Consensus 168 ~iL~~~a~~~~l---~l~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 168 IVLQRNAYQRGI---ELSDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHH
Confidence 999988865432 223778889999998877655543
No 53
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.51 E-value=6.5e-09 Score=110.17 Aligned_cols=142 Identities=20% Similarity=0.298 Sum_probs=105.1
Q ss_pred ccccccccceecccccccccCcccccccCCCCccEEecccCcCcCcCCccccCCCCccEEEeecCCCCCCCchhccCCCC
Q 003515 621 RMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVN 700 (814)
Q Consensus 621 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 700 (814)
.+..|..|+++.|.+..+.... .+--|+.|-+++|+ ++.+|..|+.+.+|..||.+.|. +..+|..++.+..
T Consensus 119 ~L~~lt~l~ls~NqlS~lp~~l------C~lpLkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~s 190 (722)
T KOG0532|consen 119 NLEALTFLDLSSNQLSHLPDGL------CDLPLKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTS 190 (722)
T ss_pred hhhHHHHhhhccchhhcCChhh------hcCcceeEEEecCc-cccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHH
Confidence 3445555555555444333221 23357777777765 67889999988899999999875 6778888999999
Q ss_pred cCEeecccCCCCCCCccccCCCCCCCEEeccCCCCCCccchhhcCCCCCCEEeccCCCCCCcChhhhcCCCCC
Q 003515 701 LQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSILNLENLE 773 (814)
Q Consensus 701 L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~ 773 (814)
|+.|+++.|. +..+|..+..| .|..||+++| .+..+|-.|.+|+.|++|-|.+|++..-|..|+-.-.+.
T Consensus 191 lr~l~vrRn~-l~~lp~El~~L-pLi~lDfScN-kis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVH 260 (722)
T KOG0532|consen 191 LRDLNVRRNH-LEDLPEELCSL-PLIRLDFSCN-KISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVH 260 (722)
T ss_pred HHHHHHhhhh-hhhCCHHHhCC-ceeeeecccC-ceeecchhhhhhhhheeeeeccCCCCCChHHHHhcccee
Confidence 9999999865 56778777744 5888999876 678899999999999999999999988887776444443
No 54
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.50 E-value=3.6e-07 Score=83.39 Aligned_cols=116 Identities=22% Similarity=0.401 Sum_probs=75.9
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhhchhhhccC----CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHH
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF----KDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLE 262 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 262 (814)
+.+++.|+|.+|+|||++++.+.++ ....+ ...++|+.++...+...+...|+.+++..........+..+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHH
Confidence 3578999999999999999999873 22210 34578999988889999999999999977655334445555555
Q ss_pred HHhcccCCCcEEEEEeCCCCC-chHHHhhhcc--cCCCeEEEEEccc
Q 003515 263 RLLKPIRPEAILLVLDDVWSG-SESLLQKFKF--QLPYYKILVTSRS 306 (814)
Q Consensus 263 ~~l~~l~~kr~LlVlDdv~~~-~~~~~~~~~~--~~~gs~iivTtR~ 306 (814)
+.+. +.+..+||+||+..- ....+..+.. ...+.++|+..+.
T Consensus 81 ~~l~--~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALD--RRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHH--HCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHH--hcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 5553 233379999999665 4433333321 2566777777654
No 55
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.50 E-value=1.5e-07 Score=103.80 Aligned_cols=181 Identities=28% Similarity=0.430 Sum_probs=139.8
Q ss_pred ChhcCCCCCCcEEEeecccc--cCcccccccccCCC-CCCCEEEecCCCCCCc--cccccccccccceecccccccccCc
Q 003515 568 PKFLEKMDKLKVMIVTNYGF--FPAELSNIQVFGAL-SNLKRIRLEHVSLPSL--TTVRMKHLQNVSLVMCNVDQVVQNS 642 (814)
Q Consensus 568 p~~l~~l~~Lr~L~l~~~~~--~~~~~~~l~~l~~l-~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~~~~~~~~~~~ 642 (814)
+..+..++.+..|.+.++.. +|... ..+ ++|+.|++++|++..+ ....+++|+.|++.+|.+..+....
T Consensus 109 ~~~~~~~~~l~~L~l~~n~i~~i~~~~------~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~ 182 (394)
T COG4886 109 ISELLELTNLTSLDLDNNNITDIPPLI------GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLL 182 (394)
T ss_pred chhhhcccceeEEecCCcccccCcccc------ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhh
Confidence 44556667888888887643 33332 334 3899999999999887 6778999999999999887765543
Q ss_pred ccccccCCCCccEEecccCcCcCcCCccccCCCCccEEEeecCCCCCCCchhccCCCCcCEeecccCCCCCCCccccCCC
Q 003515 643 TFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNL 722 (814)
Q Consensus 643 ~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~L 722 (814)
. ..++|+.|++++|. ...+|..+..+.+|+.|.+++|. .-..+..+.++.++..|.+.+|. ...+|..++.+
T Consensus 183 ~-----~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~l 254 (394)
T COG4886 183 S-----NLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNK-LEDLPESIGNL 254 (394)
T ss_pred h-----hhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCce-eeeccchhccc
Confidence 2 57889999999987 56678877777889999999875 44566678889999999977754 45557888899
Q ss_pred CCCCEEeccCCCCCCccchhhcCCCCCCEEeccCCCCCCcCh
Q 003515 723 SNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPS 764 (814)
Q Consensus 723 ~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~ 764 (814)
++|+.|++++| .+..++. ++.+.+|+.|+++++.+..++.
T Consensus 255 ~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 255 SNLETLDLSNN-QISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccceeccccc-ccccccc-ccccCccCEEeccCccccccch
Confidence 99999999997 4666665 8899999999999998764443
No 56
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.49 E-value=2e-08 Score=98.00 Aligned_cols=108 Identities=26% Similarity=0.274 Sum_probs=44.3
Q ss_pred CCCccEEecccCcCcCcCCccccCCCCccEEEeecCCCCCCCchhccCCCCcCEeecccCCCCCCCccccCCCCCCCEEe
Q 003515 650 FPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLD 729 (814)
Q Consensus 650 l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~ 729 (814)
.|.+++|++++|.+... ..+..+++|+.||+++|. +..+..+-.+|-|.++|.|++|. +..+ ..+++|.+|..|+
T Consensus 306 ~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La~N~-iE~L-SGL~KLYSLvnLD 380 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLAQNK-IETL-SGLRKLYSLVNLD 380 (490)
T ss_pred ccceeEEeccccceeee--hhhhhcccceEeecccch-hHhhhhhHhhhcCEeeeehhhhh-Hhhh-hhhHhhhhheecc
Confidence 34444455544443221 113444444455554433 22233333344444444444432 1122 2334444455555
Q ss_pred ccCCCCCCcc--chhhcCCCCCCEEeccCCCCCCcC
Q 003515 730 ISECLNIQEL--PERIGELCSLKTLCLKGCSMFELP 763 (814)
Q Consensus 730 l~~~~~~~~l--p~~l~~l~~L~~L~l~~~~l~~lp 763 (814)
+.+|. +..+ ..+||+|+.|+++.+.+|++..+|
T Consensus 381 l~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 381 LSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred ccccc-hhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 54442 2211 123445555555555555544333
No 57
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=6.4e-06 Score=88.87 Aligned_cols=187 Identities=16% Similarity=0.120 Sum_probs=105.8
Q ss_pred CCCCCCccchhHHHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHh
Q 003515 166 PPVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHK 244 (814)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l 244 (814)
-++++|.+..++.+.+.+..+. .+.+.++|+.|+||||+|+.+++. +...... . ..++..-....++....
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~--l~c~~~~-----~-~~pc~~c~~c~~~~~~~ 86 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKS--LNCQNGI-----T-SNPCRKCIICKEIEKGL 86 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHH--hcCCCCC-----C-CCCCCCCHHHHHHhcCC
Confidence 3567999999999988888655 456789999999999999999872 2111000 0 00000000001111000
Q ss_pred CCCC----CCCCChHHHHHHHHHHhc--ccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEccccc------
Q 003515 245 GYAV----PEFQTDEDAINDLERLLK--PIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------ 308 (814)
Q Consensus 245 ~~~~----~~~~~~~~~~~~l~~~l~--~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------ 308 (814)
..+. +......+....+.+.+. ...+++-++|+|++..-... ++..+....+..++|++|.+..
T Consensus 87 ~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI 166 (363)
T PRK14961 87 CLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTI 166 (363)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHH
Confidence 0000 000011111222222221 12356679999999766543 4444444445677777775542
Q ss_pred cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHH
Q 003515 309 PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 363 (814)
Q Consensus 309 ~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 363 (814)
..-...+++.+++.++..+.+...+...+. .-.++.+..|++.++|.|..+.
T Consensus 167 ~SRc~~~~~~~l~~~el~~~L~~~~~~~g~---~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 167 LSRCLQFKLKIISEEKIFNFLKYILIKESI---DTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred HhhceEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 111237899999999999888876644322 1135678889999999886433
No 58
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.1e-05 Score=86.08 Aligned_cols=166 Identities=16% Similarity=0.203 Sum_probs=112.8
Q ss_pred CCCCCCccchhHHHHHHHh----hCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCc-EEEEEecCCCCHHHHHHHH
Q 003515 166 PPVTPGLDVPLQELKLELF----KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDN-IFFVTVSQTPNVKGIVQKV 240 (814)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~-~~wv~v~~~~~~~~~~~~i 240 (814)
|+.+.+|+++++++...|. .....-+.|+|.+|+|||+.++.|.+ ++....... +++|++-...+..+++..|
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 4458999999999998887 23344499999999999999999998 665554443 6799999999999999999
Q ss_pred HHHhCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCch----HHHhhhcccCC-CeEEEE--Ecccc-c----
Q 003515 241 YQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSE----SLLQKFKFQLP-YYKILV--TSRSV-F---- 308 (814)
Q Consensus 241 ~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~~----~~~~~~~~~~~-gs~iiv--TtR~~-~---- 308 (814)
+..++..........+....+.+.+.. .++.++||||+++.... -+..-+..... .++|++ .+-+. .
T Consensus 94 ~~~~~~~p~~g~~~~~~~~~l~~~~~~-~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 94 LNKLGKVPLTGDSSLEILKRLYDNLSK-KGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HHHcCCCCCCCCchHHHHHHHHHHHHh-cCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHh
Confidence 999984433334455556666666632 68899999999854321 12222222222 344333 22221 0
Q ss_pred ------cCCCCccccCCCCHHHHHHHHHHHcc
Q 003515 309 ------PQFGSGYDLKPLNDEAARTLFRYSAN 334 (814)
Q Consensus 309 ------~~~~~~~~l~~L~~~~~~~Lf~~~a~ 334 (814)
.-....+..++-+.+|-.+.+..++-
T Consensus 173 d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 173 DPRVKSSLGPSEIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred hhhhhhccCcceeeeCCCCHHHHHHHHHHHHH
Confidence 01111467888999999999887763
No 59
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.46 E-value=1.2e-06 Score=81.66 Aligned_cols=120 Identities=15% Similarity=0.180 Sum_probs=73.3
Q ss_pred CCccchhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC
Q 003515 170 PGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVP 249 (814)
Q Consensus 170 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~ 249 (814)
+|++..+.++...+.....+.+.|+|.+|+|||++++.+++. ... ....++++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~--~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANE--LFR-PGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHH--hhc-CCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 478888899988887666788999999999999999999983 322 23346677765544332221111100
Q ss_pred CCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc----hHHHhhhccc------CCCeEEEEEcccc
Q 003515 250 EFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGS----ESLLQKFKFQ------LPYYKILVTSRSV 307 (814)
Q Consensus 250 ~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~----~~~~~~~~~~------~~gs~iivTtR~~ 307 (814)
...... ......++.+||+||++... ..+...+... ..+..+|+||...
T Consensus 72 --------~~~~~~-~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 --------LVRLLF-ELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred --------hHhHHH-HhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 000111 11124577899999998542 2233333322 3578888888764
No 60
>PLN03025 replication factor C subunit; Provisional
Probab=98.46 E-value=5.8e-06 Score=87.74 Aligned_cols=174 Identities=12% Similarity=0.096 Sum_probs=105.7
Q ss_pred CCCCCCccchhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhh-hccCCCcEEEEEecCCCCHHHHHHHHHHHh
Q 003515 166 PPVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQV-LGKFKDNIFFVTVSQTPNVKGIVQKVYQHK 244 (814)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l 244 (814)
-++++|.++.++.|..++.....+-+.++|++|+||||+|+.+++ .. ...|...++-++.++..... ..+.+++.+
T Consensus 12 l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~--~l~~~~~~~~~~eln~sd~~~~~-~vr~~i~~~ 88 (319)
T PLN03025 12 LDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAH--ELLGPNYKEAVLELNASDDRGID-VVRNKIKMF 88 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHH--HHhcccCccceeeecccccccHH-HHHHHHHHH
Confidence 356789888888888877766666688999999999999999987 33 22333222222323322222 222222211
Q ss_pred CCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEccccc------cCCCCc
Q 003515 245 GYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------PQFGSG 314 (814)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------~~~~~~ 314 (814)
.... .....++.-++|+|+++.-... +...+....+.+++|+++.... ..-...
T Consensus 89 ~~~~----------------~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~ 152 (319)
T PLN03025 89 AQKK----------------VTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAI 152 (319)
T ss_pred Hhcc----------------ccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhc
Confidence 1000 0000245679999999765533 2233333344577777775442 112337
Q ss_pred cccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhH
Q 003515 315 YDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLA 361 (814)
Q Consensus 315 ~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Pla 361 (814)
++++++++++..+.+...+...+.. -.++....|++.++|-.-.
T Consensus 153 i~f~~l~~~~l~~~L~~i~~~egi~---i~~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 153 VRFSRLSDQEILGRLMKVVEAEKVP---YVPEGLEAIIFTADGDMRQ 196 (319)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHH
Confidence 8999999999999888877443321 1266788999999987643
No 61
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=4.2e-06 Score=93.10 Aligned_cols=192 Identities=13% Similarity=0.089 Sum_probs=106.5
Q ss_pred CCCCCccchhHHHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHH--
Q 003515 167 PVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQH-- 243 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~-- 243 (814)
+++||-+.-++.|.+++..+. .+.+.++|..|+||||+|+.+.+. +...=..+.--+. ++.+..-.....|...
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAka--LnC~~p~~~~g~~-~~PCG~C~sC~~I~aG~h 92 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKS--LNCTGADGEGGIT-AQPCGQCRACTEIDAGRF 92 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCccccccCC-CCCCcccHHHHHHHcCCC
Confidence 467999999999999998666 456789999999999999998862 2110000000000 0000000111111100
Q ss_pred ---hCCCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEccccccC-----
Q 003515 244 ---KGYAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVFPQ----- 310 (814)
Q Consensus 244 ---l~~~~~~~~~~~~~~~~l~~~l-~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~~~----- 310 (814)
+..+.......++..+.+.... ....++.-++|||++...... ++..+.....++++|++|.+...-
T Consensus 93 pDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIr 172 (700)
T PRK12323 93 VDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVL 172 (700)
T ss_pred CcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHH
Confidence 0000000011112122122111 112567779999999876643 444444444566766666654211
Q ss_pred -CCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHH
Q 003515 311 -FGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTV 364 (814)
Q Consensus 311 -~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 364 (814)
-...+.++.++.++..+.+.+.+...+. .-.++..+.|++.++|.|.-+..
T Consensus 173 SRCq~f~f~~ls~eei~~~L~~Il~~Egi---~~d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 173 SRCLQFNLKQMPPGHIVSHLDAILGEEGI---AHEVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred HHHHhcccCCCChHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 1227899999999999988876643322 11355678899999999964443
No 62
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.44 E-value=1.2e-07 Score=111.94 Aligned_cols=151 Identities=28% Similarity=0.430 Sum_probs=116.8
Q ss_pred cccccccceecccccccccCcccccccCCCCccEEecccCcC-cCcCCc-cccCCCCccEEEeecCCCCCCCchhccCCC
Q 003515 622 MKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCND-LIELPD-GLCDIVSIKKLRITNCHKLSALPEGIGKLV 699 (814)
Q Consensus 622 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~-~~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 699 (814)
....+...+.++......... ..+.|++|-+.+|.. ...++. .|..++.|++||+++|...+.+|.+++.|-
T Consensus 522 ~~~~rr~s~~~~~~~~~~~~~------~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li 595 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHIAGSS------ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV 595 (889)
T ss_pred hhheeEEEEeccchhhccCCC------CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence 345566666666655444332 466899999998863 444444 378899999999999999999999999999
Q ss_pred CcCEeecccCCCCCCCccccCCCCCCCEEeccCCCCCCccchhhcCCCCCCEEeccCCCCC---CcChhhhcCCCCCEEE
Q 003515 700 NLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMF---ELPSSILNLENLEVVK 776 (814)
Q Consensus 700 ~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~---~lp~~l~~l~~L~~L~ 776 (814)
+|++|++++ +.+..+|..+++|.+|.+|++..+.....+|.....|++|++|.+...... ..-..+.+|++|+.+.
T Consensus 596 ~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls 674 (889)
T KOG4658|consen 596 HLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLS 674 (889)
T ss_pred hhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhe
Confidence 999999999 557899999999999999999998777777776777999999999876522 2234556677777666
Q ss_pred cCC
Q 003515 777 CDE 779 (814)
Q Consensus 777 l~~ 779 (814)
+..
T Consensus 675 ~~~ 677 (889)
T KOG4658|consen 675 ITI 677 (889)
T ss_pred eec
Confidence 543
No 63
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.44 E-value=2.4e-08 Score=100.10 Aligned_cols=191 Identities=16% Similarity=0.189 Sum_probs=136.4
Q ss_pred hhcCCCCCCcEEEeecccccCccccccc-ccCCCCCCCEEEecCCCCCCc----------------ccccccccccccee
Q 003515 569 KFLEKMDKLKVMIVTNYGFFPAELSNIQ-VFGALSNLKRIRLEHVSLPSL----------------TTVRMKHLQNVSLV 631 (814)
Q Consensus 569 ~~l~~l~~Lr~L~l~~~~~~~~~~~~l~-~l~~l~~L~~L~l~~n~l~~~----------------~~~~l~~L~~L~l~ 631 (814)
+++-.+++|++|+|++|.+-|..+..|. .+.++.+|++|.|.+|-+... ....-+.||++...
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 4556677899999999877776655443 356788899999999876543 11234578888888
Q ss_pred cccccccccCcccccccCCCCccEEecccCcCcCc----CCccccCCCCccEEEeecCCCCCC----CchhccCCCCcCE
Q 003515 632 MCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIE----LPDGLCDIVSIKKLRITNCHKLSA----LPEGIGKLVNLQM 703 (814)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~----lp~~i~~l~~L~~L~l~~~~~~~~----lp~~~~~l~~L~~ 703 (814)
+|.+...........+...+.|+.+.+..|.+... +...+..+++|+.|||.+|++... +...+..+++|+.
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 77665544443444555678999999999875432 334567899999999999987653 4455667899999
Q ss_pred eecccCCCCCCCcc----cc-CCCCCCCEEeccCCCCCCc----cchhhcCCCCCCEEeccCCCC
Q 003515 704 LTLASCTDLSALPD----TI-GNLSNLNFLDISECLNIQE----LPERIGELCSLKTLCLKGCSM 759 (814)
Q Consensus 704 L~L~~~~~~~~lp~----~l-~~L~~L~~L~l~~~~~~~~----lp~~l~~l~~L~~L~l~~~~l 759 (814)
|++++|.....-.. .+ ...++|+.|.+.+|..... +-..+...+.|..|+|++|.+
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 99999875433221 11 2368999999999865442 334456789999999999998
No 64
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.44 E-value=2.5e-05 Score=83.45 Aligned_cols=171 Identities=15% Similarity=0.185 Sum_probs=104.8
Q ss_pred CCCCCccchhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhh-ccCCCcEEEEEe--cCCCCHHHHHHHHHHH
Q 003515 167 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVL-GKFKDNIFFVTV--SQTPNVKGIVQKVYQH 243 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~~wv~v--~~~~~~~~~~~~i~~~ 243 (814)
++++|+++.++.+..++.....+.+.++|.+|+||||+|+.+++ ... ..+.. .++.+ ++...... ....+..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~--~l~~~~~~~--~~i~~~~~~~~~~~~-~~~~i~~ 91 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAR--ELYGEDWRE--NFLELNASDERGIDV-IRNKIKE 91 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHH--HHcCCcccc--ceEEeccccccchHH-HHHHHHH
Confidence 45789999999999998876666789999999999999999987 322 22222 13333 22222111 1111111
Q ss_pred hCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEccccc------cCCCC
Q 003515 244 KGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------PQFGS 313 (814)
Q Consensus 244 l~~~~~~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------~~~~~ 313 (814)
+. .........+-+|++|++...... +...+....+.+.+|+++.... .....
T Consensus 92 ~~-----------------~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~ 154 (319)
T PRK00440 92 FA-----------------RTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCA 154 (319)
T ss_pred HH-----------------hcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhh
Confidence 11 000001234668999998655432 3333333345577777775431 11223
Q ss_pred ccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHH
Q 003515 314 GYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLAL 362 (814)
Q Consensus 314 ~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai 362 (814)
.+++.+++.++....+...+...+. .-.++....+++.++|.+.-+
T Consensus 155 ~~~~~~l~~~ei~~~l~~~~~~~~~---~i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 155 VFRFSPLKKEAVAERLRYIAENEGI---EITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 6889999999998888877654332 113678889999999988653
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.43 E-value=4.6e-07 Score=95.68 Aligned_cols=135 Identities=27% Similarity=0.457 Sum_probs=85.5
Q ss_pred ccccccccceecccccccccCcccccccCCCCccEEecccCcCcCcCCccccCCCCccEEEeecCCCCCCCchhccCCCC
Q 003515 621 RMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVN 700 (814)
Q Consensus 621 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 700 (814)
.+.+++.|++++|.+..++ . -.++|+.|.+++|..+..+|..+ ..+|++|++++|..+..+|..
T Consensus 50 ~~~~l~~L~Is~c~L~sLP-~-------LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------ 113 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP-V-------LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------ 113 (426)
T ss_pred HhcCCCEEEeCCCCCcccC-C-------CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------
Confidence 3688999999998665553 1 23469999999988888888766 368999999998767777754
Q ss_pred cCEeecccC--CCCCCCccccCCCCCCCEEeccCCCCC--CccchhhcCCCCCCEEeccCCCCCCcChhhhcCCCCCEEE
Q 003515 701 LQMLTLASC--TDLSALPDTIGNLSNLNFLDISECLNI--QELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEVVK 776 (814)
Q Consensus 701 L~~L~L~~~--~~~~~lp~~l~~L~~L~~L~l~~~~~~--~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~ 776 (814)
|++|.+..+ ..++.+|.+ |+.|.+.++... ..+|.. --++|++|++++|....+|..+. .+|+.|.
T Consensus 114 Le~L~L~~n~~~~L~~LPss------Lk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 114 VRSLEIKGSATDSIKNVPNG------LTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLP--ESLQSIT 183 (426)
T ss_pred cceEEeCCCCCcccccCcch------Hhheeccccccccccccccc--cCCcccEEEecCCCcccCccccc--ccCcEEE
Confidence 555666543 234556654 445555432111 111110 01567888888777555555444 4677777
Q ss_pred cCCch
Q 003515 777 CDEET 781 (814)
Q Consensus 777 l~~~~ 781 (814)
++.+.
T Consensus 184 ls~n~ 188 (426)
T PRK15386 184 LHIEQ 188 (426)
T ss_pred ecccc
Confidence 66543
No 66
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=4.4e-06 Score=96.09 Aligned_cols=170 Identities=18% Similarity=0.161 Sum_probs=106.5
Q ss_pred CCCCCccchhHHHHHHHhhCCc-EEEEEEcCCCCCHHHHHHHHhhchhhhcc-C----CCc---------------EEEE
Q 003515 167 PVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVLGK-F----KDN---------------IFFV 225 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F----~~~---------------~~wv 225 (814)
.++||.+.-++.|.+++..+.. ..+.++|..|+||||+|+.+++ .+... . +|+ ++++
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk--~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEi 93 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAK--GLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEV 93 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHH--hccCccCCCCCCCCCchHHHHHhcCCCceEEEe
Confidence 4679999999999888887664 4568999999999999999987 33211 0 110 1111
Q ss_pred EecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeE
Q 003515 226 TVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYK 299 (814)
Q Consensus 226 ~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~ 299 (814)
+.+.. ...+.+..+...+ ....+++-++|||++..-... ++..+.......+
T Consensus 94 dAas~----------------------~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vr 151 (944)
T PRK14949 94 DAASR----------------------TKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVK 151 (944)
T ss_pred ccccc----------------------cCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeE
Confidence 11110 1111122222222 112577889999999776543 3444444445677
Q ss_pred EEEEccccccC------CCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHH
Q 003515 300 ILVTSRSVFPQ------FGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 363 (814)
Q Consensus 300 iivTtR~~~~~------~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 363 (814)
+|++|.+...- -...|++++|+.++..+.+.+.+...+. .-.++....|++.++|.|--+.
T Consensus 152 FILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI---~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 152 FLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL---PFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred EEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 77776654211 1237999999999999988876643221 1236778899999999885443
No 67
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.42 E-value=1.2e-07 Score=92.82 Aligned_cols=207 Identities=21% Similarity=0.282 Sum_probs=122.0
Q ss_pred hhcCCCCCCcEEEeecc-------cccCcccccccccCCCCCCCEEEecCCCCCCcc--ccccccccccceecccccccc
Q 003515 569 KFLEKMDKLKVMIVTNY-------GFFPAELSNIQVFGALSNLKRIRLEHVSLPSLT--TVRMKHLQNVSLVMCNVDQVV 639 (814)
Q Consensus 569 ~~l~~l~~Lr~L~l~~~-------~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~~~~~~~~ 639 (814)
..+.-+..|.+|.+++. .++|.-++ | .+.-..+|+.+.++.+.-..+. ...-+.|.++...........
T Consensus 176 hildf~~~l~~l~vs~~~~p~~~sni~~~~l~-f-~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~ 253 (490)
T KOG1259|consen 176 HVLDFCTQLVALVVTPVKDPIDRSNIIPNRLS-F-NLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVP 253 (490)
T ss_pred HHHHhhhheeEEEecCCCCCCccccccccccc-c-chHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccc
Confidence 34455788899988873 12232221 1 1344567777777776544331 112245666666554332211
Q ss_pred cCcc----c---------------ccccCCCCccEEecccCcCcCcCCccccCCCCccEEEeecCCCCCCCchhccCCCC
Q 003515 640 QNST----F---------------HFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVN 700 (814)
Q Consensus 640 ~~~~----~---------------~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 700 (814)
...+ . .....+..|+.|||++|. ..++-.++.-++.++.|++++|.+ ..+. ++..|++
T Consensus 254 ~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i-~~v~-nLa~L~~ 330 (490)
T KOG1259|consen 254 SLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRI-RTVQ-NLAELPQ 330 (490)
T ss_pred cccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccc-hhhhhhhhhhccceeEEeccccce-eeeh-hhhhccc
Confidence 1000 0 011234567778888775 445666666677788888887653 3333 2666778
Q ss_pred cCEeecccCCCCCCCccccCCCCCCCEEeccCCCCCCccchhhcCCCCCCEEeccCCCCCCcC--hhhhcCCCCCEEEcC
Q 003515 701 LQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELP--SSILNLENLEVVKCD 778 (814)
Q Consensus 701 L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp--~~l~~l~~L~~L~l~ 778 (814)
|+.|+|++|. +..+..+-.+|-|.+.|.+.+| .+..+. ++++|=+|..|++++|++..+- ..|++|+.|+.+.+.
T Consensus 331 L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La~N-~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 331 LQLLDLSGNL-LAECVGWHLKLGNIKTLKLAQN-KIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred ceEeecccch-hHhhhhhHhhhcCEeeeehhhh-hHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence 8888887754 4445445556667777777776 344554 6777778888888888776432 467788888877777
Q ss_pred Cchhh
Q 003515 779 EETAY 783 (814)
Q Consensus 779 ~~~~~ 783 (814)
+|-..
T Consensus 408 ~NPl~ 412 (490)
T KOG1259|consen 408 GNPLA 412 (490)
T ss_pred CCCcc
Confidence 66443
No 68
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.42 E-value=5.1e-06 Score=83.83 Aligned_cols=160 Identities=18% Similarity=0.240 Sum_probs=96.8
Q ss_pred chhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCC
Q 003515 174 VPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQT 253 (814)
Q Consensus 174 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~ 253 (814)
..++.+.+++.....+.+.|+|.+|+|||+||+.+++. ....... +++++++...+ ..
T Consensus 24 ~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~-~~~i~~~~~~~------~~------------- 81 (226)
T TIGR03420 24 ELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAA--AEERGKS-AIYLPLAELAQ------AD------------- 81 (226)
T ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCc-EEEEeHHHHHH------hH-------------
Confidence 35666766655556778999999999999999999973 3323322 55666543211 00
Q ss_pred hHHHHHHHHHHhcccCCCcEEEEEeCCCCCch------HHHhhhcc-cCCCeEEEEEcccccc-----------C--CCC
Q 003515 254 DEDAINDLERLLKPIRPEAILLVLDDVWSGSE------SLLQKFKF-QLPYYKILVTSRSVFP-----------Q--FGS 313 (814)
Q Consensus 254 ~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~~------~~~~~~~~-~~~gs~iivTtR~~~~-----------~--~~~ 313 (814)
...+..+++ .-+||+||++.... .+...+.. ...+..+|+||+.... . .+.
T Consensus 82 --------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~ 152 (226)
T TIGR03420 82 --------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGL 152 (226)
T ss_pred --------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCe
Confidence 011111122 23899999965431 12222211 1234578888875421 0 134
Q ss_pred ccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHHHHH
Q 003515 314 GYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGG 367 (814)
Q Consensus 314 ~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 367 (814)
.++++++++++...++...+..... .-.++..+.+++.+.|.|..+..+..
T Consensus 153 ~i~l~~l~~~e~~~~l~~~~~~~~~---~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 153 VFQLPPLSDEEKIAALQSRAARRGL---QLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred eEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 6889999999999998875532221 11366778888889999887765543
No 69
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.42 E-value=3e-07 Score=86.70 Aligned_cols=126 Identities=20% Similarity=0.310 Sum_probs=51.0
Q ss_pred ccCCCCccEEEeecCCCCCCCchhcc-CCCCcCEeecccCCCCCCCccccCCCCCCCEEeccCCCCCCccchhh-cCCCC
Q 003515 671 LCDIVSIKKLRITNCHKLSALPEGIG-KLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERI-GELCS 748 (814)
Q Consensus 671 i~~l~~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~l-~~l~~ 748 (814)
+.+..+++.|+|.+|. +..+. .++ .+.+|+.|++++|.. ..++ .+..+++|+.|++++|. +..++.++ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~-I~~Ie-~L~~~l~~L~~L~Ls~N~I-~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQ-ISTIE-NLGATLDKLEVLDLSNNQI-TKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred cccccccccccccccc-ccccc-chhhhhcCCCEEECCCCCC-cccc-CccChhhhhhcccCCCC-CCccccchHHhCCc
Confidence 4566789999999976 44454 466 588999999999864 4554 57789999999999984 56676556 46999
Q ss_pred CCEEeccCCCCCCcC--hhhhcCCCCCEEEcCCchhhh----hHhhhhcCCCcEEEeec
Q 003515 749 LKTLCLKGCSMFELP--SSILNLENLEVVKCDEETAYQ----WEYFQLGQAKFRIEVIQ 801 (814)
Q Consensus 749 L~~L~l~~~~l~~lp--~~l~~l~~L~~L~l~~~~~~~----~~~~~~~l~~l~i~~~~ 801 (814)
|++|++++|.+..+. ..+..+++|+.|++.+|.... ...+...+|.|+..+..
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 999999999987443 467899999999999874432 34444568988876654
No 70
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=6.9e-06 Score=91.66 Aligned_cols=169 Identities=18% Similarity=0.201 Sum_probs=106.9
Q ss_pred CCCCCccchhHHHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhchhhhc---------------------cCCCcEEE
Q 003515 167 PVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLG---------------------KFKDNIFF 224 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~F~~~~~w 224 (814)
+++||.+..++.|..++..+. .+.+.++|+.|+||||+|+.+++. +.. .|.. ++.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~--LnC~~~~~~~pCg~C~sC~~I~~g~hpD-viE 91 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKC--LNCETGVTSTPCEVCATCKAVNEGRFID-LIE 91 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH--hCCCcCCCCCCCccCHHHHHHhcCCCCc-eEE
Confidence 567999999999999998665 567899999999999999998862 211 1111 122
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhcccCCCe
Q 003515 225 VTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYY 298 (814)
Q Consensus 225 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs 298 (814)
++.+....+ ++ ...+.... ....+++-++|+|++..-... ++..+....++.
T Consensus 92 IDAAs~~~V---------------------dd-IReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v 149 (702)
T PRK14960 92 IDAASRTKV---------------------ED-TRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHV 149 (702)
T ss_pred ecccccCCH---------------------HH-HHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCc
Confidence 222111111 11 11111111 112466779999999766533 344444444567
Q ss_pred EEEEEccccc------cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHH
Q 003515 299 KILVTSRSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 363 (814)
Q Consensus 299 ~iivTtR~~~------~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 363 (814)
++|++|.+.. ..-...+++++++.++..+.+.+.+...+. .-.++....|++.++|.+..+.
T Consensus 150 ~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI---~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 150 KFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI---AADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred EEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 7887776642 222337899999999999988877644332 1236678899999999885443
No 71
>PRK04195 replication factor C large subunit; Provisional
Probab=98.39 E-value=2.2e-05 Score=88.27 Aligned_cols=170 Identities=15% Similarity=0.200 Sum_probs=107.2
Q ss_pred CCCCCCCccchhHHHHHHHhh----CCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHH
Q 003515 165 PPPVTPGLDVPLQELKLELFK----DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKV 240 (814)
Q Consensus 165 ~~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i 240 (814)
.-++++|.+..++++.+|+.. ...+.+.|+|++|+||||+|+.++++ . .|+ ++-++.++..+.. .+..+
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e--l--~~~--~ielnasd~r~~~-~i~~~ 84 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND--Y--GWE--VIELNASDQRTAD-VIERV 84 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--c--CCC--EEEEcccccccHH-HHHHH
Confidence 345689999999999999873 12678999999999999999999983 2 132 3345555433322 22222
Q ss_pred HHHhCCCCCCCCChHHHHHHHHHHhcccC-CCcEEEEEeCCCCCch----H----HHhhhcccCCCeEEEEEccccc---
Q 003515 241 YQHKGYAVPEFQTDEDAINDLERLLKPIR-PEAILLVLDDVWSGSE----S----LLQKFKFQLPYYKILVTSRSVF--- 308 (814)
Q Consensus 241 ~~~l~~~~~~~~~~~~~~~~l~~~l~~l~-~kr~LlVlDdv~~~~~----~----~~~~~~~~~~gs~iivTtR~~~--- 308 (814)
+...... ..+. .++.+||+|+++.... . +...+. ..+..||+|+.+..
T Consensus 85 i~~~~~~------------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~ 144 (482)
T PRK04195 85 AGEAATS------------------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPS 144 (482)
T ss_pred HHHhhcc------------------CcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccc
Confidence 2221110 0112 3678999999975431 1 222222 23455677765432
Q ss_pred ----cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHH
Q 003515 309 ----PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTV 364 (814)
Q Consensus 309 ----~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 364 (814)
......+.+.+++.++....+...+...+.. -..+....|++.++|-.-.+..
T Consensus 145 ~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~---i~~eaL~~Ia~~s~GDlR~ain 201 (482)
T PRK04195 145 LRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIE---CDDEALKEIAERSGGDLRSAIN 201 (482)
T ss_pred hhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 1123368899999999988888776544332 1367889999999998765544
No 72
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.38 E-value=7.5e-07 Score=86.77 Aligned_cols=48 Identities=19% Similarity=0.310 Sum_probs=33.2
Q ss_pred CCCCccchhHHHHHHHh---hCCcEEEEEEcCCCCCHHHHHHHHhhchhhhcc
Q 003515 168 VTPGLDVPLQELKLELF---KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGK 217 (814)
Q Consensus 168 ~~vGr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~ 217 (814)
.||||+++++++...|. ....+.+.|+|.+|+|||+|.++++. +...+
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~--~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLD--RLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHH--HHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHH--HHHhc
Confidence 37999999999999993 34478999999999999999999988 44444
No 73
>PF14516 AAA_35: AAA-like domain
Probab=98.37 E-value=0.00013 Score=77.60 Aligned_cols=201 Identities=17% Similarity=0.193 Sum_probs=124.3
Q ss_pred CCCCCCCCCCCCccchhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCC-----CCHH
Q 003515 160 CSAPDPPPVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQT-----PNVK 234 (814)
Q Consensus 160 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~-----~~~~ 234 (814)
.+.|...+..|.|...-+++.+.+.+. ...+.|.|+-.+|||+|..++.+..+- ..+. ++++++... .+..
T Consensus 4 g~~~~~~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~-~~~~--~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 4 GPLPLDSPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGYR--CVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred CCCCCCCCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHH-CCCE--EEEEEeecCCCcccCCHH
Confidence 355666677799996667777777653 468899999999999999999873222 3444 568888652 2455
Q ss_pred HHHHHHHH----HhCCCCC-------CCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCCch------HHHhhhcc---
Q 003515 235 GIVQKVYQ----HKGYAVP-------EFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSGSE------SLLQKFKF--- 293 (814)
Q Consensus 235 ~~~~~i~~----~l~~~~~-------~~~~~~~~~~~l~~~l-~~l~~kr~LlVlDdv~~~~~------~~~~~~~~--- 293 (814)
.+++.++. +++.... ...........+.+.+ +. .+++.+|+||+++.... +++..+..
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~-~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~ 158 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQ-IDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYE 158 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhc-CCCCEEEEEechhhhccCcchHHHHHHHHHHHHH
Confidence 55555544 4443321 0111222333444443 32 37999999999864332 23332221
Q ss_pred c---CC--Ce--EEEEEccccc---------cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCC
Q 003515 294 Q---LP--YY--KILVTSRSVF---------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKG 357 (814)
Q Consensus 294 ~---~~--gs--~iivTtR~~~---------~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g 357 (814)
. .+ .. -|++.+.... -..+..++|++++.+|...|...+... -.+...++|...++|
T Consensus 159 ~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-------~~~~~~~~l~~~tgG 231 (331)
T PF14516_consen 159 QRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-------FSQEQLEQLMDWTGG 231 (331)
T ss_pred hcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-------CCHHHHHHHHHHHCC
Confidence 1 11 11 1222222110 123347899999999999999876421 124449999999999
Q ss_pred chhHHHHHHHHhCCC
Q 003515 358 CPLALTVVGGSLCGK 372 (814)
Q Consensus 358 ~Plai~~~~~~L~~~ 372 (814)
+|.-+..++..+...
T Consensus 232 hP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 232 HPYLVQKACYLLVEE 246 (331)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999988654
No 74
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.33 E-value=2.4e-05 Score=83.18 Aligned_cols=194 Identities=16% Similarity=0.180 Sum_probs=113.3
Q ss_pred CCCCCCCCCCCccchhHHHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhchhhhcc----CCCcEEEEEecCCCCHHH
Q 003515 161 SAPDPPPVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLGK----FKDNIFFVTVSQTPNVKG 235 (814)
Q Consensus 161 ~~~~~~~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~~wv~v~~~~~~~~ 235 (814)
..|.....++|-++..+.+...+.... ...+.|+|..|+||||+|..+.+ .+-.+ +.. . ....++....
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~--~Llc~~~~~~~~-~---~~~~~~~~c~ 90 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLAN--HILSHPDPAEAP-E---TLADPDPASP 90 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHH--HHcCCCccccCc-c---ccCCCCCCCH
Confidence 345566778999999999999888665 45689999999999999998887 33221 111 0 0011111112
Q ss_pred HHHHHHHH-------hCCCCCC------CCChHHHHHHHHHHhc--ccCCCcEEEEEeCCCCCchH----HHhhhcccCC
Q 003515 236 IVQKVYQH-------KGYAVPE------FQTDEDAINDLERLLK--PIRPEAILLVLDDVWSGSES----LLQKFKFQLP 296 (814)
Q Consensus 236 ~~~~i~~~-------l~~~~~~------~~~~~~~~~~l~~~l~--~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~ 296 (814)
..+.+... +...... ..-..+.+..+.+.+. ...+++-++|+|++..-... ++..+.....
T Consensus 91 ~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~ 170 (351)
T PRK09112 91 VWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPA 170 (351)
T ss_pred HHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCC
Confidence 22222211 1000000 0001233344454442 23567789999999766533 4444444334
Q ss_pred CeEEEEEccccc------cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHHH
Q 003515 297 YYKILVTSRSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVV 365 (814)
Q Consensus 297 gs~iivTtR~~~------~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 365 (814)
+..+|++|.... ..-...+.+.+++.++..+.+.+.+.... -.++....+++.++|.|..+..+
T Consensus 171 ~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-----~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 171 RALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-----SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 455555554431 11223799999999999999987432111 12566788999999999865544
No 75
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.8e-05 Score=88.12 Aligned_cols=189 Identities=15% Similarity=0.116 Sum_probs=107.6
Q ss_pred CCCCCCccchhHHHHHHHhhCCc-EEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHh
Q 003515 166 PPVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHK 244 (814)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l 244 (814)
-++++|-+..++.|..++..... ..+.++|++|+||||+|+.+++.-...+.++. ..|.|.+.. .+......-+..+
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~-~cg~C~sc~-~i~~~~h~dv~el 90 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPK-PCGECESCL-AVRRGAHPDVLEI 90 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCC-CCCcChhhH-HHhcCCCCceEEe
Confidence 34679988888888888876654 56699999999999999999873221122211 113222110 0000000000000
Q ss_pred CCCCCCCCChHHHHHHHHHHhc--ccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEccccc------cCCC
Q 003515 245 GYAVPEFQTDEDAINDLERLLK--PIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------PQFG 312 (814)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~l~--~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------~~~~ 312 (814)
.. .. ....+....+.+.+. ...+++-++|+|+++..... ++..+....+.+.+|++|.... ....
T Consensus 91 ~~--~~-~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 91 DA--AS-NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred cc--cc-cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 00 00 011122223333221 12456779999999766543 3444444444566666664431 1123
Q ss_pred CccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHH
Q 003515 313 SGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLAL 362 (814)
Q Consensus 313 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai 362 (814)
..+++.+++.++..+.+.+.+...+.. -.++....|++.++|.+--+
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi~---i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGRE---AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 378999999999999998877544321 13677899999999998544
No 76
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=1.6e-05 Score=89.77 Aligned_cols=168 Identities=14% Similarity=0.194 Sum_probs=105.2
Q ss_pred CCCCCccchhHHHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhchhhhc-------------------cCCCcEEEEE
Q 003515 167 PVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLG-------------------KFKDNIFFVT 226 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~~wv~ 226 (814)
+++||.+..++.|..++..+. .+.+.++|..|+||||+|+.+.+.-.... .|.. ++.++
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~D-vlEid 94 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVD-LLEID 94 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccc-eEEEe
Confidence 467999999999999988666 45789999999999999998876211000 0111 11222
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhc-----ccCCCcEEEEEeCCCCCchH----HHhhhcccCCC
Q 003515 227 VSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLK-----PIRPEAILLVLDDVWSGSES----LLQKFKFQLPY 297 (814)
Q Consensus 227 v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~g 297 (814)
.+....+ +.++++++ -..+++-++|+|++...... ++..+......
T Consensus 95 aAs~~gV-------------------------d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~ 149 (709)
T PRK08691 95 AASNTGI-------------------------DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (709)
T ss_pred ccccCCH-------------------------HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCC
Confidence 1111111 12222221 12356779999999765543 44444444456
Q ss_pred eEEEEEccccccCC------CCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHH
Q 003515 298 YKILVTSRSVFPQF------GSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 363 (814)
Q Consensus 298 s~iivTtR~~~~~~------~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 363 (814)
+++|++|.+..... ...+.++.++.++..+.+.+.+-..+. .-.++....|++.++|.+.-+.
T Consensus 150 v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi---~id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 150 VKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI---AYEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred cEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHhCCCHHHHH
Confidence 77777776542111 126788999999999998877654332 1136678999999999985433
No 77
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=1.5e-05 Score=90.39 Aligned_cols=186 Identities=17% Similarity=0.122 Sum_probs=107.5
Q ss_pred CCCCCccchhHHHHHHHhhCCc-EEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhC
Q 003515 167 PVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKG 245 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~ 245 (814)
+++||-+..++.|...+..+.. ..+.++|..|+||||+|+.+++. +..... . ...++..-...+.|...-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~--L~c~~~-----~-~~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKG--LNCETG-----I-TATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHh--hhhccC-----C-CCCCCCCCHHHHHHHcCCC
Confidence 4679999889988888886654 55789999999999999999862 211100 0 0001111111122211000
Q ss_pred -----CCCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEccccccC----
Q 003515 246 -----YAVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVFPQ---- 310 (814)
Q Consensus 246 -----~~~~~~~~~~~~~~~l~~~l--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~~~---- 310 (814)
.+.... ...+....+...+ ....+++-++|+|++..-... ++..+....+..++|++|.+...-
T Consensus 88 ~D~ieidaas~-~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI 166 (647)
T PRK07994 88 VDLIEIDAASR-TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (647)
T ss_pred CCceeeccccc-CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHH
Confidence 000000 1111122222222 123577789999999776643 444444444566777666655211
Q ss_pred --CCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHH
Q 003515 311 --FGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTV 364 (814)
Q Consensus 311 --~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 364 (814)
-...|.+++++.++..+.+.+.+...+. .-.++....|++.++|.+--+..
T Consensus 167 ~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i---~~e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 167 LSRCLQFHLKALDVEQIRQQLEHILQAEQI---PFEPRALQLLARAADGSMRDALS 219 (647)
T ss_pred HhhheEeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 1237899999999999888876533322 12356778899999998864433
No 78
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=2.9e-05 Score=83.01 Aligned_cols=196 Identities=11% Similarity=0.047 Sum_probs=109.4
Q ss_pred CCCCCCCCCCccchhHHHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEE---EEEecCCCCHHHHH
Q 003515 162 APDPPPVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIF---FVTVSQTPNVKGIV 237 (814)
Q Consensus 162 ~~~~~~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~---wv~v~~~~~~~~~~ 237 (814)
.|.....++|.+..++.+.+.+..+. ...+.++|+.|+||+|+|..+.+.---......... -.++ .....-...
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l-~~~~~c~~c 92 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSL-AIDPDHPVA 92 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccc-cCCCCChHH
Confidence 34455678999988899998888766 456899999999999999888762110110010000 0000 000000111
Q ss_pred HHHHHHhCC-------CCCC------CCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhcccCCCe
Q 003515 238 QKVYQHKGY-------AVPE------FQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYY 298 (814)
Q Consensus 238 ~~i~~~l~~-------~~~~------~~~~~~~~~~l~~~l--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs 298 (814)
+.+...-.. ...+ ..-..+.+..+.+.+ ....+++.++|+||+...+.. ++..+....+++
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 111110000 0000 000112233344443 222467789999999766543 444444444567
Q ss_pred EEEEEcccccc------CCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHHH
Q 003515 299 KILVTSRSVFP------QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVV 365 (814)
Q Consensus 299 ~iivTtR~~~~------~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 365 (814)
.+|++|.+... .-...+.+.+++.++..+++...... ..+.....++..++|.|+.+..+
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-------~~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-------LPDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 77777766521 12237899999999999999875411 12233378899999999866544
No 79
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.29 E-value=7e-06 Score=95.00 Aligned_cols=168 Identities=17% Similarity=0.226 Sum_probs=97.3
Q ss_pred CCCCCccchhH---HHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHH
Q 003515 167 PVTPGLDVPLQ---ELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQH 243 (814)
Q Consensus 167 ~~~vGr~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~ 243 (814)
++++|.+..+. .+...+..+....+.++|++|+||||||+.+++ ....+|. .++... ....++ +
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f~----~lna~~-~~i~di-r----- 94 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIAN--HTRAHFS----SLNAVL-AGVKDL-R----- 94 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHH--HhcCcce----eehhhh-hhhHHH-H-----
Confidence 46799888774 466666666777789999999999999999997 4433331 111110 001110 1
Q ss_pred hCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchHHHhhhccc-CCCeEEEEE--ccccc-------cCCCC
Q 003515 244 KGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSESLLQKFKFQ-LPYYKILVT--SRSVF-------PQFGS 313 (814)
Q Consensus 244 l~~~~~~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~~~~~~~~~~~-~~gs~iivT--tR~~~-------~~~~~ 313 (814)
+........+. ..+++.+|||||++.-.......+... ..|+.++|+ |.+.. ..-..
T Consensus 95 ------------~~i~~a~~~l~-~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTTenp~~~l~~aL~SR~~ 161 (725)
T PRK13341 95 ------------AEVDRAKERLE-RHGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVSRSR 161 (725)
T ss_pred ------------HHHHHHHHHhh-hcCCceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecCCChHhhhhhHhhcccc
Confidence 11111111121 125678999999976554333333322 235555543 34331 11234
Q ss_pred ccccCCCCHHHHHHHHHHHcccCC---CCCCCC-ChHHHHHHHHHcCCchh
Q 003515 314 GYDLKPLNDEAARTLFRYSANLQD---GNSYIP-DENLVNKILRACKGCPL 360 (814)
Q Consensus 314 ~~~l~~L~~~~~~~Lf~~~a~~~~---~~~~~~-~~~~~~~i~~~~~g~Pl 360 (814)
.+.+++|+.++...++.+.+.... ...... .++....|++.+.|..-
T Consensus 162 v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 162 LFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred ceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 789999999999999987653100 001112 36677889999998754
No 80
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=1.8e-05 Score=85.25 Aligned_cols=166 Identities=16% Similarity=0.148 Sum_probs=101.8
Q ss_pred CCCCccchhHHHHHHHhhCC----------cEEEEEEcCCCCCHHHHHHHHhhchhhhcc--------------------
Q 003515 168 VTPGLDVPLQELKLELFKDG----------RQVIVVSAPGGYGKTTLVKKLCKDDQVLGK-------------------- 217 (814)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------- 217 (814)
.++|-+..++.|.+++..+. .+-+.++|+.|+|||++|+.+++. +-..
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~--l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAA--LQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCCCCCCCCCCCHHHHHHhcCC
Confidence 57898888888988888543 466889999999999999998762 1111
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhh
Q 003515 218 FKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKF 291 (814)
Q Consensus 218 F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~l~~kr~LlVlDdv~~~~~~----~~~~~ 291 (814)
++. +.++..... ....+.+..+.+.. ....+++-++|+|++..-... ++..+
T Consensus 84 hpD-~~~i~~~~~---------------------~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~L 141 (394)
T PRK07940 84 HPD-VRVVAPEGL---------------------SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAV 141 (394)
T ss_pred CCC-EEEeccccc---------------------cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHh
Confidence 111 222211100 00111122222222 122456678899999765533 44445
Q ss_pred cccCCCeEEEEEccccc------cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHHH
Q 003515 292 KFQLPYYKILVTSRSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVV 365 (814)
Q Consensus 292 ~~~~~gs~iivTtR~~~------~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 365 (814)
....++..+|++|.+.. ..-...+.+++++.++..+.+.... .. .++.+..+++.++|.|..+..+
T Consensus 142 Eep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~---~~-----~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 142 EEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD---GV-----DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred hcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc---CC-----CHHHHHHHHHHcCCCHHHHHHH
Confidence 44455677777766642 1112378999999999988886432 11 2456788999999999765444
No 81
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=2.5e-05 Score=82.79 Aligned_cols=169 Identities=15% Similarity=0.184 Sum_probs=104.6
Q ss_pred CCCCccchhHHHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhch----hhhccCCCcEEEEEe-cCCCCHHHHHHHHH
Q 003515 168 VTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDD----QVLGKFKDNIFFVTV-SQTPNVKGIVQKVY 241 (814)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~~wv~v-~~~~~~~~~~~~i~ 241 (814)
.++|-+..++.+..++..+. .+.+.++|+.|+||||+|+.+++.- ....|.+. ..|... +....+++ .+++.
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~-~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDI-IEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCe-EEeccccCCCCCHHH-HHHHH
Confidence 46898888889999888655 4677899999999999999998721 11223332 223221 11122222 11222
Q ss_pred HHhCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEcccccc------CC
Q 003515 242 QHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVFP------QF 311 (814)
Q Consensus 242 ~~l~~~~~~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~~------~~ 311 (814)
+.+.. ....+++-++|+|++..-... ++..+....+++.+|++|.+... .-
T Consensus 83 ~~~~~-------------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 83 EEVNK-------------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred HHHhc-------------------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhh
Confidence 22111 112456677888887554432 55556655668888888866532 22
Q ss_pred CCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHH
Q 003515 312 GSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTV 364 (814)
Q Consensus 312 ~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 364 (814)
+..+.+.++++++....+..... ...++.++.++..++|.|.-+..
T Consensus 144 c~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 144 CQIYKLNRLSKEEIEKFISYKYN-------DIKEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred ceeeeCCCcCHHHHHHHHHHHhc-------CCCHHHHHHHHHHcCCCHHHHHH
Confidence 33789999999998887765431 11245577889999999875543
No 82
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=1.9e-05 Score=88.29 Aligned_cols=173 Identities=17% Similarity=0.183 Sum_probs=105.3
Q ss_pred CCCCCccchhHHHHHHHhhCCc-EEEEEEcCCCCCHHHHHHHHhhchhhh-------------------ccCCCcEEEEE
Q 003515 167 PVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVL-------------------GKFKDNIFFVT 226 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~~wv~ 226 (814)
+++||-+.-++.|.+++..+.. ..+.++|+.|+||||+|+.+++.--.. +.|+. ++.++
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d-~~eid 94 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPD-LFEVD 94 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCce-EEEEc
Confidence 4679999999999999986664 567899999999999999988621111 11222 22333
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEE
Q 003515 227 VSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILV 302 (814)
Q Consensus 227 v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iiv 302 (814)
.+....++++ +++++.+.. ....++.-++|+|++..-... ++..+....+.+++|+
T Consensus 95 aas~~~v~~i-R~l~~~~~~-------------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIl 154 (509)
T PRK14958 95 AASRTKVEDT-RELLDNIPY-------------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFIL 154 (509)
T ss_pred ccccCCHHHH-HHHHHHHhh-------------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 2222222221 112221111 112467779999999776543 4444444445677777
Q ss_pred Ecccccc------CCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHH
Q 003515 303 TSRSVFP------QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 363 (814)
Q Consensus 303 TtR~~~~------~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 363 (814)
+|.+... .-...+++++++.++..+.+.+.+...+. .-.++....|++.++|.+.-+.
T Consensus 155 attd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi---~~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 155 ATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV---EFENAALDLLARAANGSVRDAL 218 (509)
T ss_pred EECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHH
Confidence 6655421 11236889999999887777666543322 1135667889999999885443
No 83
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=2.3e-05 Score=87.46 Aligned_cols=173 Identities=18% Similarity=0.228 Sum_probs=105.3
Q ss_pred CCCCCccchhHHHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhchhhhc---------------------cCCCcEEE
Q 003515 167 PVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLG---------------------KFKDNIFF 224 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~F~~~~~w 224 (814)
++++|-+..++.+...+.... ...+.++|+.|+||||+|+.+++ .+.. .|.. +++
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk--~L~c~~~~~~~pCg~C~sC~~i~~~~~~d-lie 92 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAK--CLNCKTGVTAEPCNKCENCVAINNNSFID-LIE 92 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH--HhCCCCCCCCCCCcccHHHHHHhcCCCCc-eEE
Confidence 467999999999998887655 45678999999999999999986 2211 1222 223
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhc--ccCCCcEEEEEeCCCCCchH----HHhhhcccCCCe
Q 003515 225 VTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLK--PIRPEAILLVLDDVWSGSES----LLQKFKFQLPYY 298 (814)
Q Consensus 225 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~--~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs 298 (814)
+.......+.+ ...+...+. ...+++-++|+|++..-... ++..+....+.+
T Consensus 93 idaas~~gvd~----------------------ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v 150 (546)
T PRK14957 93 IDAASRTGVEE----------------------TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYV 150 (546)
T ss_pred eecccccCHHH----------------------HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCc
Confidence 32222112111 111111111 12467779999999765543 444444434456
Q ss_pred EEEEEccccc------cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchh-HHHHHHH
Q 003515 299 KILVTSRSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPL-ALTVVGG 367 (814)
Q Consensus 299 ~iivTtR~~~------~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~ 367 (814)
.+|++|.+.. ..-+..+++++++.++..+.+.+.+...+. .-.++....|++.++|.+- |+..+-.
T Consensus 151 ~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi---~~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 151 KFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI---NSDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred eEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 6665554431 112347899999999988887775533221 2236677889999999764 5554433
No 84
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=1.1e-05 Score=87.64 Aligned_cols=186 Identities=12% Similarity=0.108 Sum_probs=105.3
Q ss_pred CCCCCccchhHHHHHHHhhCCc-EEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhC
Q 003515 167 PVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKG 245 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~ 245 (814)
+++||-+..+..|..++..... ..+.++|+.|+||||+|+.+++ .+...-... ...+....+-..+.......+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk--~Lnce~~~~--~~pCg~C~sC~~i~~g~~~dvi 93 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAK--RLNCENPIG--NEPCNECTSCLEITKGISSDVL 93 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH--hcCcccccC--ccccCCCcHHHHHHccCCccce
Confidence 4679998888889888887664 4689999999999999999987 322111000 0011111111111111100000
Q ss_pred -CCCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEcccccc------CCC
Q 003515 246 -YAVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVFP------QFG 312 (814)
Q Consensus 246 -~~~~~~~~~~~~~~~l~~~l--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~~------~~~ 312 (814)
.+.. .....+....+.+.+ ....++.-++|+|++..-... ++..+........+|.+|..... .-.
T Consensus 94 EIdaa-s~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRC 172 (484)
T PRK14956 94 EIDAA-SNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRC 172 (484)
T ss_pred eechh-hcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhh
Confidence 0000 001112222232222 122466779999999776644 33333333345565655554321 112
Q ss_pred CccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchh
Q 003515 313 SGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPL 360 (814)
Q Consensus 313 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Pl 360 (814)
..|.+.+++.++..+.+.+.+...+. .-.++....|++.++|.+.
T Consensus 173 q~~~f~~ls~~~i~~~L~~i~~~Egi---~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 173 QDFIFKKVPLSVLQDYSEKLCKIENV---QYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred heeeecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCChHH
Confidence 26899999999998888877644332 1236778999999999984
No 85
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=2.8e-05 Score=85.45 Aligned_cols=172 Identities=19% Similarity=0.225 Sum_probs=107.6
Q ss_pred CCCCCccchhHHHHHHHhhCCc-EEEEEEcCCCCCHHHHHHHHhhch------------------hhh-ccCCCcEEEEE
Q 003515 167 PVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDD------------------QVL-GKFKDNIFFVT 226 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~------------------~~~-~~F~~~~~wv~ 226 (814)
+++||.+..++.+.+.+..+.. +.+.++|+.|+||||+|+.++.-- .+. ..+.. ++.++
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D-v~eid 91 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD-VIEID 91 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC-EEEEe
Confidence 4679998888888888876664 478999999999999999887510 000 11122 34444
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEE
Q 003515 227 VSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILV 302 (814)
Q Consensus 227 v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iiv 302 (814)
.+....+.++ +.+++.... .-..+++-++|+|++...... ++..+....+.+++|+
T Consensus 92 aas~~~vddI-R~Iie~~~~-------------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIl 151 (491)
T PRK14964 92 AASNTSVDDI-KVILENSCY-------------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFIL 151 (491)
T ss_pred cccCCCHHHH-HHHHHHHHh-------------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 4333333221 122221110 112456778999999765543 4444554556677777
Q ss_pred Eccccc------cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHH
Q 003515 303 TSRSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLAL 362 (814)
Q Consensus 303 TtR~~~------~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai 362 (814)
+|.... ..-...+++++++.++..+.+.+.+...+. .-.++....|++.++|.+..+
T Consensus 152 atte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi---~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 152 ATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI---EHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred EeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 775431 122337899999999999998887754432 113667888999999987543
No 86
>PRK08727 hypothetical protein; Validated
Probab=98.25 E-value=3.1e-05 Score=77.99 Aligned_cols=160 Identities=19% Similarity=0.167 Sum_probs=94.0
Q ss_pred CCCcc-chhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCC
Q 003515 169 TPGLD-VPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYA 247 (814)
Q Consensus 169 ~vGr~-~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 247 (814)
|++.. ..+..+...........+.|+|..|+|||+|++++++ ....... .+.|+++.+ ....+.
T Consensus 21 f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~--~~~~~~~-~~~y~~~~~------~~~~~~------ 85 (233)
T PRK08727 21 YIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCA--AAEQAGR-SSAYLPLQA------AAGRLR------ 85 (233)
T ss_pred ccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCC-cEEEEeHHH------hhhhHH------
Confidence 44433 3333333333233345799999999999999999988 3333322 356776432 111111
Q ss_pred CCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc---hH---HHhhhcc-cCCCeEEEEEccccccC----------
Q 003515 248 VPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGS---ES---LLQKFKF-QLPYYKILVTSRSVFPQ---------- 310 (814)
Q Consensus 248 ~~~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~---~~---~~~~~~~-~~~gs~iivTtR~~~~~---------- 310 (814)
..++.+ .+.-+||+||+.... .+ +...+.. ...|..||+|++.....
T Consensus 86 ---------------~~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S 149 (233)
T PRK08727 86 ---------------DALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS 149 (233)
T ss_pred ---------------HHHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH
Confidence 111111 233489999985332 11 2222221 12466799999875211
Q ss_pred ---CCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHH
Q 003515 311 ---FGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLAL 362 (814)
Q Consensus 311 ---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai 362 (814)
.+..+++++++.++-.+++.+++...+. .-.++....|++.+.|-.-.+
T Consensus 150 Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l---~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 150 RLAQCIRIGLPVLDDVARAAVLRERAQRRGL---ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHhcCceEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhCCCCHHHH
Confidence 2337899999999999999987754322 223677888999988765444
No 87
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.24 E-value=3.6e-05 Score=75.00 Aligned_cols=152 Identities=21% Similarity=0.243 Sum_probs=91.6
Q ss_pred HHHHHHHhhCCc-EEEEEEcCCCCCHHHHHHHHhhchhhhc---------------------cCCCcEEEEEecCCCCHH
Q 003515 177 QELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVLG---------------------KFKDNIFFVTVSQTPNVK 234 (814)
Q Consensus 177 ~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~F~~~~~wv~v~~~~~~~ 234 (814)
+.+.+.+..... ..+.++|+.|+||||+|+.+.. .+.. .++. ..++......
T Consensus 2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~--~l~~~~~~~~~~c~~~~~c~~~~~~~~~d-~~~~~~~~~~--- 75 (188)
T TIGR00678 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAK--ALLCEQPGGGEPCGECPSCRLIEAGNHPD-LHRLEPEGQS--- 75 (188)
T ss_pred hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH--HHcCCCCCCCCCCCCCHHHHHHHcCCCCc-EEEeccccCc---
Confidence 345566665554 6789999999999999998876 3321 1211 1222211100
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcc--cCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEccccc
Q 003515 235 GIVQKVYQHKGYAVPEFQTDEDAINDLERLLKP--IRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF 308 (814)
Q Consensus 235 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~--l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~ 308 (814)
...+....+.+.+.. ..+.+-++|+||+...... ++..+....+.+.+|++|++..
T Consensus 76 ------------------~~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~ 137 (188)
T TIGR00678 76 ------------------IKVDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPE 137 (188)
T ss_pred ------------------CCHHHHHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChH
Confidence 011112222222211 2456778999998665432 4444444445677777776541
Q ss_pred ------cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhH
Q 003515 309 ------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLA 361 (814)
Q Consensus 309 ------~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Pla 361 (814)
......+.+.+++.++..+.+.+.. . .++.+..|++.++|.|..
T Consensus 138 ~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~g----i-----~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 138 KLLPTIRSRCQVLPFPPLSEEALLQWLIRQG----I-----SEEAAELLLALAGGSPGA 187 (188)
T ss_pred hChHHHHhhcEEeeCCCCCHHHHHHHHHHcC----C-----CHHHHHHHHHHcCCCccc
Confidence 1122378999999999988887761 1 256789999999998863
No 88
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=1.6e-05 Score=88.08 Aligned_cols=188 Identities=19% Similarity=0.214 Sum_probs=104.3
Q ss_pred CCCCCccchhHHHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhC
Q 003515 167 PVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKG 245 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~ 245 (814)
.+++|-+..+..+...+..+. .+.+.++|+.|+||||+|+.+++.-........+--+..+... .-...+.....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i~~~~h 96 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISFNNHNH 96 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHHhcCCC
Confidence 467899888888887777655 4678899999999999999998721111110000000000000 00111110000
Q ss_pred -----CCCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEcccc-c-----
Q 003515 246 -----YAVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSV-F----- 308 (814)
Q Consensus 246 -----~~~~~~~~~~~~~~~l~~~l--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~-~----- 308 (814)
.+.......++ ...+.+.. ....+++-++|+|+++..... ++..+....+.+.+|++|... .
T Consensus 97 ~Dv~eidaas~~~vd~-Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI 175 (507)
T PRK06645 97 PDIIEIDAASKTSVDD-IRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATI 175 (507)
T ss_pred CcEEEeeccCCCCHHH-HHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHH
Confidence 00000011111 11121111 123567789999999876543 444444444566766555433 1
Q ss_pred cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHH
Q 003515 309 PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLAL 362 (814)
Q Consensus 309 ~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai 362 (814)
..-...+++++++.++..+.+.+.+...+. .-.++....|++.++|.+.-+
T Consensus 176 ~SRc~~~ef~~ls~~el~~~L~~i~~~egi---~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 176 ISRCQRYDLRRLSFEEIFKLLEYITKQENL---KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HhcceEEEccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 112236889999999999999888754432 113567788999999987433
No 89
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=3.5e-05 Score=85.18 Aligned_cols=178 Identities=15% Similarity=0.179 Sum_probs=103.4
Q ss_pred CCCCCCccchhHHHHHHHhhCCc-EEEEEEcCCCCCHHHHHHHHhhchhhhcc--C-CC---------------cEEEEE
Q 003515 166 PPVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVLGK--F-KD---------------NIFFVT 226 (814)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F-~~---------------~~~wv~ 226 (814)
-+++||.+...+.|...+..+.. +.+.++|++|+||||+|+.+++.-..... + ++ .+..++
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~ 92 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELD 92 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEe
Confidence 35679988887777777776665 56889999999999999999873111000 0 00 022222
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEE
Q 003515 227 VSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKI 300 (814)
Q Consensus 227 v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~i 300 (814)
.+...... ....+.+.. ....+++-++|+|++..-... ++..+....+...+
T Consensus 93 aa~~~gid----------------------~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 93 AASNRGID----------------------EIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred CcccCCHH----------------------HHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 22111111 112222222 112456779999999654332 33334333334555
Q ss_pred EEEccccc------cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCC-chhHHHHHHHH
Q 003515 301 LVTSRSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKG-CPLALTVVGGS 368 (814)
Q Consensus 301 ivTtR~~~------~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~~~ 368 (814)
|++|.+.. ......+++.+++.++....+...+...+. .-.++....|++.++| ++.|+..+...
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi---~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI---EIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 54544321 122237889999999998888877644322 1136678889988865 46676666553
No 90
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.22 E-value=4e-05 Score=77.30 Aligned_cols=166 Identities=16% Similarity=0.207 Sum_probs=97.1
Q ss_pred CCCCCCccch-hHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHh
Q 003515 166 PPVTPGLDVP-LQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHK 244 (814)
Q Consensus 166 ~~~~vGr~~~-~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l 244 (814)
+..++|.... +..+..+......+.+.|+|+.|+|||+|++.+++ ..... ...+.++.+.....
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~--~~~~~-~~~v~y~~~~~~~~------------ 86 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACA--ELSQR-GRAVGYVPLDKRAW------------ 86 (235)
T ss_pred cccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHH--HHHhC-CCeEEEEEHHHHhh------------
Confidence 3455573322 33333333344557899999999999999999987 33332 23366776643100
Q ss_pred CCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc---hH---HHhhhccc-CCC-eEEEEEcccccc-------
Q 003515 245 GYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGS---ES---LLQKFKFQ-LPY-YKILVTSRSVFP------- 309 (814)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~---~~---~~~~~~~~-~~g-s~iivTtR~~~~------- 309 (814)
.. ..+.+.+ . +.-+|++||+.... .+ +...+... ..| .++|+||+....
T Consensus 87 --------~~----~~~~~~~---~-~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~ 150 (235)
T PRK08084 87 --------FV----PEVLEGM---E-QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLP 150 (235)
T ss_pred --------hh----HHHHHHh---h-hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccH
Confidence 00 0111111 1 12378999995421 11 22222221 133 479999986521
Q ss_pred ------CCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHHH
Q 003515 310 ------QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVV 365 (814)
Q Consensus 310 ------~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 365 (814)
..+.++++++++.++-.+++.+++...+. .-.+++..-|++.+.|..-++..+
T Consensus 151 ~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~---~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 151 DLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGF---ELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhhcCCHHHHHHH
Confidence 23347899999999999998876644321 223788888999998876555443
No 91
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=5.9e-05 Score=84.95 Aligned_cols=171 Identities=19% Similarity=0.218 Sum_probs=104.7
Q ss_pred CCCCCccchhHHHHHHHhhCCc-EEEEEEcCCCCCHHHHHHHHhhchhhhc---------------------cCCCcEEE
Q 003515 167 PVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVLG---------------------KFKDNIFF 224 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~F~~~~~w 224 (814)
.+++|-+..++.+..++..... +.+.++|+.|+||||+|+.+.+. +.. .|.. +++
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~--l~c~~~~~~~pcg~C~~C~~i~~~~~~d-~~e 92 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKS--LNCETGVTATPCGVCSACLEIDSGRFVD-LIE 92 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCCCCCCCCHHHHHHhcCCCCc-eeE
Confidence 4679999999999888886654 56789999999999999998762 211 1111 122
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhcccCCCe
Q 003515 225 VTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYY 298 (814)
Q Consensus 225 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs 298 (814)
+..+.... .+....+.... .-..+++-++|+|++...... ++..+....+.+
T Consensus 93 i~~~~~~~----------------------vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~ 150 (527)
T PRK14969 93 VDAASNTQ----------------------VDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHV 150 (527)
T ss_pred eeccccCC----------------------HHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCE
Confidence 22111111 11111221111 112467789999999766543 444454444566
Q ss_pred EEEEEccccccCC------CCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchh-HHHHH
Q 003515 299 KILVTSRSVFPQF------GSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPL-ALTVV 365 (814)
Q Consensus 299 ~iivTtR~~~~~~------~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 365 (814)
.+|++|.+..... ...++++.++.++..+.+.+.+...+. .-.++....|++.++|.+- |+..+
T Consensus 151 ~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi---~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 151 KFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI---PFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6776665442111 227899999999998888776543322 1235677889999999875 44443
No 92
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.20 E-value=2.5e-06 Score=90.22 Aligned_cols=133 Identities=22% Similarity=0.389 Sum_probs=76.9
Q ss_pred CCCCCCEEEecCCCCCCccccccccccccceecccccccccCcccccccCCCCccEEecccCcCcCcCCccccCCCCccE
Q 003515 600 ALSNLKRIRLEHVSLPSLTTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKK 679 (814)
Q Consensus 600 ~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 679 (814)
.+.++..|++++|.+..++ ....+|+.|.+.+|......+.. -.++|+.|.+++|..+..+|.. |+.
T Consensus 50 ~~~~l~~L~Is~c~L~sLP-~LP~sLtsL~Lsnc~nLtsLP~~------LP~nLe~L~Ls~Cs~L~sLP~s------Le~ 116 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP-VLPNELTEITIENCNNLTTLPGS------IPEGLEKLTVCHCPEISGLPES------VRS 116 (426)
T ss_pred HhcCCCEEEeCCCCCcccC-CCCCCCcEEEccCCCCcccCCch------hhhhhhheEccCcccccccccc------cce
Confidence 3466677777777666664 23456888888776543332221 1257999999998666666653 666
Q ss_pred EEeecCC--CCCCCchhccCCCCcCEeecccCCCC--CCCccccCCC-CCCCEEeccCCCCCCccchhhcCCCCCCEEec
Q 003515 680 LRITNCH--KLSALPEGIGKLVNLQMLTLASCTDL--SALPDTIGNL-SNLNFLDISECLNIQELPERIGELCSLKTLCL 754 (814)
Q Consensus 680 L~l~~~~--~~~~lp~~~~~l~~L~~L~L~~~~~~--~~lp~~l~~L-~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l 754 (814)
|++.++. .++.+|+ +|+.|.+.+++.. ..+|. .| ++|++|++++|... .+|..+. .+|+.|++
T Consensus 117 L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 117 LEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred EEeCCCCCcccccCcc------hHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 6676533 2445554 3556665433211 11121 12 47888888877543 3444333 47777777
Q ss_pred cCC
Q 003515 755 KGC 757 (814)
Q Consensus 755 ~~~ 757 (814)
+.|
T Consensus 185 s~n 187 (426)
T PRK15386 185 HIE 187 (426)
T ss_pred ccc
Confidence 765
No 93
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.20 E-value=1.9e-05 Score=79.79 Aligned_cols=171 Identities=16% Similarity=0.143 Sum_probs=104.6
Q ss_pred CCCCCccchhH---HHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHH
Q 003515 167 PVTPGLDVPLQ---ELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQH 243 (814)
Q Consensus 167 ~~~vGr~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~ 243 (814)
+++||.+.-+. -|.+++.++.++.+.+||++|+||||||+.+....+-.. .++|..|-...-..-++.|+++
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S-----yrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS-----YRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc-----eEEEEEeccccchHHHHHHHHH
Confidence 34566554432 344555678889999999999999999999987332222 4578887665544445555544
Q ss_pred hCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchHHHhhhcc-cCCCeEEEE--EccccccCC-------CC
Q 003515 244 KGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSESLLQKFKF-QLPYYKILV--TSRSVFPQF-------GS 313 (814)
Q Consensus 244 l~~~~~~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~~~~~~~~~~-~~~gs~iiv--TtR~~~~~~-------~~ 313 (814)
-. +. ..+.++|..|++|.|..-....-+.|.+ ...|+-++| ||.++.... ..
T Consensus 213 aq-----------------~~-~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~ 274 (554)
T KOG2028|consen 213 AQ-----------------NE-KSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCR 274 (554)
T ss_pred HH-----------------HH-HhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhccc
Confidence 21 00 1236789999999996554433334433 345665555 666663222 22
Q ss_pred ccccCCCCHHHHHHHHHHHcc--cCC----CCCCCC----ChHHHHHHHHHcCCchh
Q 003515 314 GYDLKPLNDEAARTLFRYSAN--LQD----GNSYIP----DENLVNKILRACKGCPL 360 (814)
Q Consensus 314 ~~~l~~L~~~~~~~Lf~~~a~--~~~----~~~~~~----~~~~~~~i~~~~~g~Pl 360 (814)
++.++.|+.++...++.+..- +.. ..-+.+ ...+.+-++..|.|-..
T Consensus 275 VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 275 VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred eeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 789999999999888877321 111 111111 14466677777888653
No 94
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.18 E-value=2.8e-06 Score=85.49 Aligned_cols=93 Identities=15% Similarity=0.110 Sum_probs=59.6
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCC--CCHHHHHHHHHHHhCCCCCCCCChH--HHHHHHH
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQT--PNVKGIVQKVYQHKGYAVPEFQTDE--DAINDLE 262 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~--~~~~~~~~~i~~~l~~~~~~~~~~~--~~~~~l~ 262 (814)
....++|+|++|+|||||++.++++.... +|+. +.|+.+.+. .++.++++.+...+-....+.+... .....+.
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv-~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEV-YLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCe-EEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 35678999999999999999999854333 7887 669997666 7899999998333211111111111 1111111
Q ss_pred HHhc--ccCCCcEEEEEeCCC
Q 003515 263 RLLK--PIRPEAILLVLDDVW 281 (814)
Q Consensus 263 ~~l~--~l~~kr~LlVlDdv~ 281 (814)
...+ .-.+++.++++|++.
T Consensus 93 ~~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHH
Confidence 1111 125899999999984
No 95
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=4.8e-05 Score=86.15 Aligned_cols=190 Identities=16% Similarity=0.217 Sum_probs=104.4
Q ss_pred CCCCCccchhHHHHHHHhhCCc-EEEEEEcCCCCCHHHHHHHHhhchhhhccCC-CcEEEEEecCCCCHHHHHHHHHHHh
Q 003515 167 PVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFK-DNIFFVTVSQTPNVKGIVQKVYQHK 244 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~~wv~v~~~~~~~~~~~~i~~~l 244 (814)
+++||-+.-++.|.+++..+.. ..+.++|..|+||||+|+.+.+.--...... .+.-. ..+..-.....|...-
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~g~ 91 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDSGR 91 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHcCC
Confidence 4679988888888888886664 6678999999999999999865211000000 00000 0111111111111000
Q ss_pred CCCCCCCCC-hHHHHHHHHHHh-----cccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEccccc------
Q 003515 245 GYAVPEFQT-DEDAINDLERLL-----KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------ 308 (814)
Q Consensus 245 ~~~~~~~~~-~~~~~~~l~~~l-----~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------ 308 (814)
..+.-+... .....+.+++++ .-..++.-++|||+++..... ++..+......+++|++|.+..
T Consensus 92 h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TI 171 (618)
T PRK14951 92 FVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTV 171 (618)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHH
Confidence 000000000 001112222222 112456668999999876643 3333333334567776665431
Q ss_pred cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHH
Q 003515 309 PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 363 (814)
Q Consensus 309 ~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 363 (814)
..-+..++++.++.++..+.+.+.+...+. .-.++....|++.++|.+.-+.
T Consensus 172 lSRc~~~~f~~Ls~eei~~~L~~i~~~egi---~ie~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 172 LSRCLQFNLRPMAPETVLEHLTQVLAAENV---PAEPQALRLLARAARGSMRDAL 223 (618)
T ss_pred HHhceeeecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 222347899999999999888877644332 1135678899999999875443
No 96
>PF13173 AAA_14: AAA domain
Probab=98.17 E-value=4.2e-06 Score=75.72 Aligned_cols=113 Identities=26% Similarity=0.351 Sum_probs=69.7
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHh-c
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL-K 266 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~ 266 (814)
.+++.|.|+.|+|||||+++++++.. -+..++++++.+.........+ +.+.+ +
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~~~---------------------~~~~~~~ 56 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLADPD---------------------LLEYFLE 56 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhhhh---------------------hHHHHHH
Confidence 36899999999999999999987322 2233668876553221110000 11111 2
Q ss_pred ccCCCcEEEEEeCCCCCchH--HHhhhcccCCCeEEEEEccccccC--------CCC--ccccCCCCHHHH
Q 003515 267 PIRPEAILLVLDDVWSGSES--LLQKFKFQLPYYKILVTSRSVFPQ--------FGS--GYDLKPLNDEAA 325 (814)
Q Consensus 267 ~l~~kr~LlVlDdv~~~~~~--~~~~~~~~~~gs~iivTtR~~~~~--------~~~--~~~l~~L~~~~~ 325 (814)
....+..+|+||++....++ .+..+....+..+|++|+.+.... .|. .+++.||+-.|.
T Consensus 57 ~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 57 LIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred hhccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 22347889999999766543 344444445678999999875211 111 578888887763
No 97
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=8.4e-08 Score=93.89 Aligned_cols=147 Identities=17% Similarity=0.226 Sum_probs=67.6
Q ss_pred CCccEEecccCcCcCcC--CccccCCCCccEEEeecCCCCCCCch-hccC-CCCcCEeecccCCCC---CCCccccCCCC
Q 003515 651 PNLLEIDIDYCNDLIEL--PDGLCDIVSIKKLRITNCHKLSALPE-GIGK-LVNLQMLTLASCTDL---SALPDTIGNLS 723 (814)
Q Consensus 651 ~~L~~L~L~~~~~~~~l--p~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~-l~~L~~L~L~~~~~~---~~lp~~l~~L~ 723 (814)
.+|+.|+|+.|+..++- ---+.+++.|..|+|++|....+.-. .+.. -.+|..|+|+||... ..+......++
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp 313 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCP 313 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCC
Confidence 44555555555433221 11234556666666666554332211 1111 135566666655321 12222334556
Q ss_pred CCCEEeccCCCCCCc-cchhhcCCCCCCEEeccCCCC-C-CcChhhhcCCCCCEEEcCCchhh-hhHhhhhcCCCcEE
Q 003515 724 NLNFLDISECLNIQE-LPERIGELCSLKTLCLKGCSM-F-ELPSSILNLENLEVVKCDEETAY-QWEYFQLGQAKFRI 797 (814)
Q Consensus 724 ~L~~L~l~~~~~~~~-lp~~l~~l~~L~~L~l~~~~l-~-~lp~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~l~i 797 (814)
+|.+||+++|..+.. +-..+-+++.|++|.++.|-. - +---.+.+.+.|..|+..+.-.. ..+-+...+|+++|
T Consensus 314 ~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 314 NLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI 391 (419)
T ss_pred ceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccc
Confidence 666666666644432 223345666666666666651 1 11113455666666655443222 23333333555554
No 98
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.14 E-value=0.00011 Score=79.90 Aligned_cols=171 Identities=16% Similarity=0.184 Sum_probs=104.8
Q ss_pred CCCCCCccchhHHHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhchhhhc----------------------cCCCcE
Q 003515 166 PPVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLG----------------------KFKDNI 222 (814)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----------------------~F~~~~ 222 (814)
-..++|.+..++.+.+++.... .+.+.++|++|+||||+|+.+... +.. +++ +
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~--l~~~~~~~~~~c~~c~~c~~~~~~~~~~--~ 88 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKA--LNCQNGPDGEPCNECESCKEINSGSSLD--V 88 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCCCCCCCCHHHHHHhcCCCCC--E
Confidence 3467999999999999888655 457889999999999999988762 211 111 1
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhcccCC
Q 003515 223 FFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLP 296 (814)
Q Consensus 223 ~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~ 296 (814)
.+++.+..... +....+.+.+ ....+++-++|+|++...... ++..+....+
T Consensus 89 ~~~~~~~~~~~----------------------~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~ 146 (355)
T TIGR02397 89 IEIDAASNNGV----------------------DDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPE 146 (355)
T ss_pred EEeeccccCCH----------------------HHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcc
Confidence 22222111111 1111222222 112356668999998655432 4444443344
Q ss_pred CeEEEEEccccc------cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHHH
Q 003515 297 YYKILVTSRSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVV 365 (814)
Q Consensus 297 gs~iivTtR~~~------~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 365 (814)
.+.+|++|.+.. ......+++.++++++..+.+...+...+. .-.++.+..+++.++|.|..+...
T Consensus 147 ~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~---~i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 147 HVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI---KIEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred ceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCChHHHHHH
Confidence 567677765432 112336788899999998888876644332 113578888999999998655543
No 99
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=3.2e-05 Score=84.48 Aligned_cols=193 Identities=14% Similarity=0.109 Sum_probs=105.3
Q ss_pred CCCCCCCccchhHHHHHHHhhCCc-EEEEEEcCCCCCHHHHHHHHhhchhhhc--cCCCcEEEEE-ecCCCCHHHHHHHH
Q 003515 165 PPPVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVLG--KFKDNIFFVT-VSQTPNVKGIVQKV 240 (814)
Q Consensus 165 ~~~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~~wv~-v~~~~~~~~~~~~i 240 (814)
.-++++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++ .+.. .+.. .-|.. +..++..-...+.+
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~--~l~c~~~~~~-~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAK--AVNCQRMIDD-ADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHH--HhcCCCCcCc-ccccccCCCCCCCCHHHHHH
Confidence 345679988888888888876665 4588999999999999999886 3321 1100 00110 00111111111111
Q ss_pred HHHhCCCCCC----CCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEcccccc-
Q 003515 241 YQHKGYAVPE----FQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVFP- 309 (814)
Q Consensus 241 ~~~l~~~~~~----~~~~~~~~~~l~~~l--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~~- 309 (814)
......+... .....+.+..+.+.+ .-..+++-++|+|++..-... ++..+....+.+.+|++|.....
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 1110000000 001112222222222 122456678999998765432 44444444456676666643311
Q ss_pred -----CCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHH
Q 003515 310 -----QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 363 (814)
Q Consensus 310 -----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 363 (814)
.....++++++++++..+.+...+...+. .-.++.+..|++.++|.+--+.
T Consensus 171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~---~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI---SVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 11236889999999988888776533221 1136788999999999885333
No 100
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=8.4e-05 Score=83.12 Aligned_cols=191 Identities=16% Similarity=0.192 Sum_probs=105.5
Q ss_pred CCCCCCccchhHHHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHh
Q 003515 166 PPVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHK 244 (814)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l 244 (814)
-..++|.+..++.+.+++..+. .+.+.++|+.|+||||+|+.+++ .+... -|... ..+..-...+.+....
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk--~L~C~-----~~~~~-~~Cg~C~sCr~i~~~~ 86 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAK--AINCL-----NPKDG-DCCNSCSVCESINTNQ 86 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCC-----CCCCC-CCCcccHHHHHHHcCC
Confidence 3567999999999998887654 45788999999999999999986 22110 01110 1111111111111110
Q ss_pred CCCCC----CCCChHHHHHHHHHHhc--ccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEccccc------
Q 003515 245 GYAVP----EFQTDEDAINDLERLLK--PIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------ 308 (814)
Q Consensus 245 ~~~~~----~~~~~~~~~~~l~~~l~--~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------ 308 (814)
..... ......+..+.+..... ...+++-++|+|++..-... ++..+....+.+.+|++|....
T Consensus 87 h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI 166 (605)
T PRK05896 87 SVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTI 166 (605)
T ss_pred CCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHH
Confidence 00000 00011111222222221 12344557999999765433 3333333334566666664431
Q ss_pred cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchh-HHHHHHH
Q 003515 309 PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPL-ALTVVGG 367 (814)
Q Consensus 309 ~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~ 367 (814)
..-+..+++.++++++....+...+...+.. -.++.+..+++.++|.+. |+..+-.
T Consensus 167 ~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~---Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 167 ISRCQRYNFKKLNNSELQELLKSIAKKEKIK---IEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HhhhhhcccCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 1123478999999999988888766443221 125678899999999764 4444443
No 101
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.09 E-value=2.4e-06 Score=65.79 Aligned_cols=60 Identities=25% Similarity=0.396 Sum_probs=32.0
Q ss_pred CCccEEecccCcCcCcCCccccCCCCccEEEeecCCCCCCCchhccCCCCcCEeecccCC
Q 003515 651 PNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCT 710 (814)
Q Consensus 651 ~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~ 710 (814)
|+|+.|++++|.+..-.+..+..+++|++|++++|.+...-|..|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 345566666654433333455566666666666555433333455556666666665553
No 102
>PRK05642 DNA replication initiation factor; Validated
Probab=98.08 E-value=6.8e-05 Score=75.49 Aligned_cols=144 Identities=15% Similarity=0.204 Sum_probs=88.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhccc
Q 003515 189 QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPI 268 (814)
Q Consensus 189 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~l 268 (814)
..+.|+|..|+|||.|++++++ ..... ..++.|++..+ +... ...+.+.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~--~~~~~-~~~v~y~~~~~------~~~~------------------~~~~~~~~--- 95 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACL--RFEQR-GEPAVYLPLAE------LLDR------------------GPELLDNL--- 95 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHhC-CCcEEEeeHHH------HHhh------------------hHHHHHhh---
Confidence 5789999999999999999987 33322 23466776532 1111 01111112
Q ss_pred CCCcEEEEEeCCCCCc---h---HHHhhhcc-cCCCeEEEEEcccccc-------------CCCCccccCCCCHHHHHHH
Q 003515 269 RPEAILLVLDDVWSGS---E---SLLQKFKF-QLPYYKILVTSRSVFP-------------QFGSGYDLKPLNDEAARTL 328 (814)
Q Consensus 269 ~~kr~LlVlDdv~~~~---~---~~~~~~~~-~~~gs~iivTtR~~~~-------------~~~~~~~l~~L~~~~~~~L 328 (814)
++-. +||+||+.... . .+..-+.. ...|..+|+|++.... ..+..+++++++.++-.+.
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 2222 67899995321 1 13333322 2346788998876421 1233688999999999999
Q ss_pred HHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHHHH
Q 003515 329 FRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVG 366 (814)
Q Consensus 329 f~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 366 (814)
+..++..... .-.+++..-|++.+.|..-.+..+-
T Consensus 175 l~~ka~~~~~---~l~~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 175 LQLRASRRGL---HLTDEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHHHHHcCC---CCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 9866644321 1236788889999988766555443
No 103
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=0.00015 Score=78.90 Aligned_cols=171 Identities=15% Similarity=0.172 Sum_probs=101.0
Q ss_pred CCCCCccchhHHHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhchhhhc--------cCCCcEEEEEecCCCCHHHHH
Q 003515 167 PVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLG--------KFKDNIFFVTVSQTPNVKGIV 237 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------~F~~~~~wv~v~~~~~~~~~~ 237 (814)
++++|.+..++.+.+.+.... .+.+.++|++|+||||+|+.+.+ .+.. .|...++-+......+..+ .
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~--~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i 93 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILAR--KINQPGYDDPNEDFSFNIFELDAASNNSVDD-I 93 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH--HhcCCCCCCCCCCCCcceEEeccccCCCHHH-H
Confidence 467999999999999988655 45888999999999999999976 3321 2222222221111111111 1
Q ss_pred HHHHHHhCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEccccc-----
Q 003515 238 QKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF----- 308 (814)
Q Consensus 238 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~----- 308 (814)
..+++.+.. ....+++-++|+|++...... ++..+....+.+.+|++|....
T Consensus 94 ~~l~~~~~~-------------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 94 RNLIDQVRI-------------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred HHHHHHHhh-------------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 111211110 112345668999998654432 2222333233456666554331
Q ss_pred -cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHH
Q 003515 309 -PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLAL 362 (814)
Q Consensus 309 -~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai 362 (814)
......++.+++++++....+...+...+.. -.++....+++.++|.+-.+
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~---i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK---FEDDALHIIAQKADGALRDA 206 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHhCCCCHHHH
Confidence 1122378899999999988888776543321 13678888999999976533
No 104
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.06 E-value=0.0001 Score=74.26 Aligned_cols=163 Identities=19% Similarity=0.200 Sum_probs=92.6
Q ss_pred CCCccchhHHHH-HHHh-hCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCC
Q 003515 169 TPGLDVPLQELK-LELF-KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGY 246 (814)
Q Consensus 169 ~vGr~~~~~~l~-~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~ 246 (814)
+.|..++..... ++.. ....+.+.|+|..|+|||+||+.+++.. ..... .+.+++..+... . +
T Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~-~~~~~--~~~~i~~~~~~~------~----~-- 85 (227)
T PRK08903 21 VAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA-SYGGR--NARYLDAASPLL------A----F-- 85 (227)
T ss_pred ccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH-HhCCC--cEEEEehHHhHH------H----H--
Confidence 345554443333 3333 1335678999999999999999999832 12222 244665433110 0 0
Q ss_pred CCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhccc-CCCe-EEEEEcccccc----------C
Q 003515 247 AVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQ-LPYY-KILVTSRSVFP----------Q 310 (814)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~-~~gs-~iivTtR~~~~----------~ 310 (814)
.. ....-+||+||+.....+ +...+... ..+. .+|+|++.... .
T Consensus 86 ----------------~~----~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr 145 (227)
T PRK08903 86 ----------------DF----DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTR 145 (227)
T ss_pred ----------------hh----cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHH
Confidence 00 123347899999643322 22222211 2333 46666664310 1
Q ss_pred --CCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHHHHHHh
Q 003515 311 --FGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGGSL 369 (814)
Q Consensus 311 --~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~L 369 (814)
.+..++++++++++-..++.+.+-..+. .-.++....+++.+.|.+..+..+-..+
T Consensus 146 ~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v---~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 146 LGWGLVYELKPLSDADKIAALKAAAAERGL---QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HhcCeEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 1247889999998877777664422221 1236788889999999998877665544
No 105
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.05 E-value=1.1e-05 Score=84.49 Aligned_cols=101 Identities=15% Similarity=0.136 Sum_probs=62.8
Q ss_pred HHHHHHh-hCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCC--CHHHHHHHHHHHhCCCCCCCCCh
Q 003515 178 ELKLELF-KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTP--NVKGIVQKVYQHKGYAVPEFQTD 254 (814)
Q Consensus 178 ~l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~--~~~~~~~~i~~~l~~~~~~~~~~ 254 (814)
++++++. -..-...+|+|++|+||||||+++|++.... +|+. ..|+.+.+.. .+.++++.+...+-....+.+..
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv-~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~ 235 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEV-HLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAE 235 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCe-EEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHH
Confidence 3445554 2234578899999999999999999954443 8988 6699998877 67777777763211111111111
Q ss_pred H------HHHHHHHHHhcccCCCcEEEEEeCCCC
Q 003515 255 E------DAINDLERLLKPIRPEAILLVLDDVWS 282 (814)
Q Consensus 255 ~------~~~~~l~~~l~~l~~kr~LlVlDdv~~ 282 (814)
. ......+.+. ..+++++|++|++..
T Consensus 236 ~~~~~a~~~ie~Ae~~~--e~G~dVlL~iDsItR 267 (416)
T PRK09376 236 RHVQVAEMVIEKAKRLV--EHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHHHHHHHH--HcCCCEEEEEEChHH
Confidence 1 1111111111 268999999999843
No 106
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.03 E-value=0.00011 Score=84.31 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=39.9
Q ss_pred CCCCCccchhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchh
Q 003515 167 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQ 213 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 213 (814)
+.++|++..+..+...+.......+.|+|++|+||||+|+.+++...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~ 200 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAK 200 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 46799999999988887766667899999999999999999987543
No 107
>PRK09087 hypothetical protein; Validated
Probab=98.00 E-value=0.0001 Score=73.58 Aligned_cols=135 Identities=15% Similarity=0.139 Sum_probs=85.7
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcc
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKP 267 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 267 (814)
.+.+.|+|..|+|||+|++.+++. . . +.+++.. .+...+... +
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~--~----~--~~~i~~~------~~~~~~~~~---------------------~-- 86 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK--S----D--ALLIHPN------EIGSDAANA---------------------A-- 86 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh--c----C--CEEecHH------HcchHHHHh---------------------h--
Confidence 467999999999999999988863 1 1 2244331 111111111 0
Q ss_pred cCCCcEEEEEeCCCCCc---hHHHhhhcc-cCCCeEEEEEccccc-------------cCCCCccccCCCCHHHHHHHHH
Q 003515 268 IRPEAILLVLDDVWSGS---ESLLQKFKF-QLPYYKILVTSRSVF-------------PQFGSGYDLKPLNDEAARTLFR 330 (814)
Q Consensus 268 l~~kr~LlVlDdv~~~~---~~~~~~~~~-~~~gs~iivTtR~~~-------------~~~~~~~~l~~L~~~~~~~Lf~ 330 (814)
.+ -+|++||+.... +.+...+.. ...|..+|+|++... ...+..+++++++.++-.+++.
T Consensus 87 -~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 87 -AE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred -hc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 11 278889995422 233333322 234678999988541 1234489999999999999999
Q ss_pred HHcccCCCCCCCCChHHHHHHHHHcCCchhHHHHH
Q 003515 331 YSANLQDGNSYIPDENLVNKILRACKGCPLALTVV 365 (814)
Q Consensus 331 ~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 365 (814)
+.+...+. .-.+++..-|++.+.|..-++..+
T Consensus 164 ~~~~~~~~---~l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 164 KLFADRQL---YVDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHHHcCC---CCCHHHHHHHHHHhhhhHHHHHHH
Confidence 88744322 123788889999999887766643
No 108
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=0.00014 Score=85.44 Aligned_cols=171 Identities=13% Similarity=0.132 Sum_probs=103.8
Q ss_pred CCCCCccchhHHHHHHHhhCCc-EEEEEEcCCCCCHHHHHHHHhhchhhhccC---CCc-----------------EEEE
Q 003515 167 PVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVLGKF---KDN-----------------IFFV 225 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~-----------------~~wv 225 (814)
.++||.+..++.|..++..+.. +.+.++|..|+||||+|+.+.+.-...... .|+ ++++
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~ei 94 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEI 94 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEe
Confidence 4679999889999999886664 568899999999999999998631111110 111 1111
Q ss_pred EecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeE
Q 003515 226 TVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYK 299 (814)
Q Consensus 226 ~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~ 299 (814)
+.... ...+.+..+.+.+ .-..++.-++|||++...... ++..+......+.
T Consensus 95 daas~----------------------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~ 152 (824)
T PRK07764 95 DAASH----------------------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLK 152 (824)
T ss_pred ccccc----------------------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeE
Confidence 11111 0112222232222 223566778999999776543 4444444445667
Q ss_pred EEEEccccc------cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHH
Q 003515 300 ILVTSRSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLAL 362 (814)
Q Consensus 300 iivTtR~~~------~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai 362 (814)
+|++|.+.. ..-+..|++..++.++..+.+.+.+...+. .-..+....|++.++|.+..+
T Consensus 153 fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv---~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 153 FIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV---PVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred EEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 676664432 122347899999999988888776533322 113566788999999988433
No 109
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=8e-05 Score=84.54 Aligned_cols=191 Identities=16% Similarity=0.156 Sum_probs=108.6
Q ss_pred CCCCCCCccchhHHHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCC---cEEEEEecCCCCHHHHHHHH
Q 003515 165 PPPVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKD---NIFFVTVSQTPNVKGIVQKV 240 (814)
Q Consensus 165 ~~~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~---~~~wv~v~~~~~~~~~~~~i 240 (814)
.-.+++|.+..++.|.+++..+. ...+.++|+.|+||||+|+.+++ .+...... +.-+- .+..-.-...|
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk--~L~c~~~~~~~~~~~~----~cg~c~~C~~i 95 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILAR--ALNYEGPDGDGGPTID----LCGVGEHCQAI 95 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHH--hhCcCCccccCCCccc----cCcccHHHHHH
Confidence 33567999999999999888666 44688999999999999999987 22211110 00000 01111111112
Q ss_pred HHHhCCCCC----CCCChHHHHHHHHHHhc--ccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEccccc--
Q 003515 241 YQHKGYAVP----EFQTDEDAINDLERLLK--PIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF-- 308 (814)
Q Consensus 241 ~~~l~~~~~----~~~~~~~~~~~l~~~l~--~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~-- 308 (814)
...-..+.- ......+.+..+.+.++ -..+++-++|+|++...... ++..+....+.+.+|++|....
T Consensus 96 ~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kl 175 (598)
T PRK09111 96 MEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKV 175 (598)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhh
Confidence 111100000 00011112222222221 12456678999999765532 4444444455677776664321
Q ss_pred ----cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHH
Q 003515 309 ----PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTV 364 (814)
Q Consensus 309 ----~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 364 (814)
..-...+++..++.++....+.+.+...+. .-.++....|++.++|.+.-+..
T Consensus 176 l~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi---~i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 176 PVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV---EVEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 112237889999999999998887643332 11357788999999999865543
No 110
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=0.00034 Score=77.84 Aligned_cols=169 Identities=13% Similarity=0.195 Sum_probs=105.6
Q ss_pred CCCCCCccchhHHHHHHHhhCCc-EEEEEEcCCCCCHHHHHHHHhhchhhh-cc-------------------CCCcEEE
Q 003515 166 PPVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVL-GK-------------------FKDNIFF 224 (814)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~-------------------F~~~~~w 224 (814)
-++++|-+..++.+...+..+.. +++.++|..|+||||+|+.+++ .+- .. +...++.
T Consensus 13 fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk--~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~e 90 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFAR--ALVCEQGPSSTPCDTCIQCQSALENRHIDIIE 90 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHH--HhcCCCCCCCCCCcccHHHHHHhhcCCCeEEE
Confidence 34679988888888888876664 4678999999999999998876 221 00 1111222
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhc-----ccCCCcEEEEEeCCCCCchH----HHhhhcccC
Q 003515 225 VTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLK-----PIRPEAILLVLDDVWSGSES----LLQKFKFQL 295 (814)
Q Consensus 225 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~ 295 (814)
+..+....+ +.+++.++ -..+++-++|+|++...... ++..+....
T Consensus 91 ldaas~~gI-------------------------d~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp 145 (535)
T PRK08451 91 MDAASNRGI-------------------------DDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPP 145 (535)
T ss_pred eccccccCH-------------------------HHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcC
Confidence 221111111 12222221 11356679999999766543 444444444
Q ss_pred CCeEEEEEccccc------cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHH
Q 003515 296 PYYKILVTSRSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTV 364 (814)
Q Consensus 296 ~gs~iivTtR~~~------~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 364 (814)
+.+.+|++|.+.. ..-...+++.+++.++..+.+.+.+...+. .-.++.+..|++.++|.+.-+..
T Consensus 146 ~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi---~i~~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 146 SYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV---SYEPEALEILARSGNGSLRDTLT 217 (535)
T ss_pred CceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHHH
Confidence 5677777776642 112337899999999998888776644332 11367888999999999854443
No 111
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00017 Score=81.14 Aligned_cols=192 Identities=16% Similarity=0.161 Sum_probs=108.5
Q ss_pred CCCCCccchhHHHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhC
Q 003515 167 PVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKG 245 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~ 245 (814)
++++|-+..++.|..++..+. ...+.++|+.|+||||+|+.+++. +...... . ...++.-...+.|.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~--L~C~~~~-----~-~~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKA--LNCETAP-----T-GEPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHh--ccccCCC-----C-CCCCcccHHHHHHhcCCC
Confidence 466898877778877777655 577889999999999999998872 2110000 0 001111111111111100
Q ss_pred CCCCCC----CChHHHHHHHHHHhc--ccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEccccc------c
Q 003515 246 YAVPEF----QTDEDAINDLERLLK--PIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------P 309 (814)
Q Consensus 246 ~~~~~~----~~~~~~~~~l~~~l~--~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------~ 309 (814)
.+.... ....+....+.+.+. ...+++-+||+|++..-... ++..+....+...+|++|.... .
T Consensus 88 pDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~ 167 (624)
T PRK14959 88 VDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIV 167 (624)
T ss_pred CceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHH
Confidence 000000 011122222333331 22467779999999766533 4444433334566666665531 1
Q ss_pred CCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCch-hHHHHHHHHh
Q 003515 310 QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCP-LALTVVGGSL 369 (814)
Q Consensus 310 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~~~L 369 (814)
.-...+++++++.++..+.+...+...+. .-.++.++.|++.++|.+ .|+..+...+
T Consensus 168 SRcq~i~F~pLs~~eL~~~L~~il~~egi---~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 168 SRCQHFTFTRLSEAGLEAHLTKVLGREGV---DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhhccccCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 11237899999999999888876644332 113678889999999965 6777776544
No 112
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=0.00025 Score=81.09 Aligned_cols=185 Identities=16% Similarity=0.211 Sum_probs=103.3
Q ss_pred CCCCCCccchhHHHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhchhhhc-cCCCcEEEEEecCCCCHHHHHHHHHH-
Q 003515 166 PPVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLG-KFKDNIFFVTVSQTPNVKGIVQKVYQ- 242 (814)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~~wv~v~~~~~~~~~~~~i~~- 242 (814)
-..++|.+..++.+..++..+. .+.+.++|+.|+||||+|+.+++ .+-. +... . +-.+.. ......
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk--~LnC~~~~~-~-~~pC~~-------C~~~~~~ 85 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFAN--ALNCSHKTD-L-LEPCQE-------CIENVNN 85 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHH--HhcccccCC-C-CCchhH-------HHHhhcC
Confidence 3467999988999999888655 55678999999999999999876 2211 1000 0 000000 000000
Q ss_pred H---hCCCCCCCCChHHHHHHHHHHhc--ccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEccccc-----
Q 003515 243 H---KGYAVPEFQTDEDAINDLERLLK--PIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF----- 308 (814)
Q Consensus 243 ~---l~~~~~~~~~~~~~~~~l~~~l~--~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~----- 308 (814)
. +...... ....+.++.+.+.+. ...+++-++|+|++..-... ++..+....+.+.+|++|....
T Consensus 86 ~~Dvieidaas-n~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 86 SLDIIEMDAAS-NNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred CCcEEEEeccc-cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 0 0000000 011122233333332 12467779999999765433 3333443334555555554331
Q ss_pred -cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchh-HHHHH
Q 003515 309 -PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPL-ALTVV 365 (814)
Q Consensus 309 -~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 365 (814)
..-...+++.+++.++..+.+...+...+. .-..+.+..|++.++|.+. |+..+
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI---~id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENI---SYEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 112347899999999998888776543322 1135678899999999775 44433
No 113
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.94 E-value=6.6e-05 Score=89.34 Aligned_cols=174 Identities=13% Similarity=0.135 Sum_probs=99.7
Q ss_pred CCCCCCccchhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhhcc------CCCcEEEEEecCCCCHHHHHHH
Q 003515 166 PPVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGK------FKDNIFFVTVSQTPNVKGIVQK 239 (814)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~~wv~v~~~~~~~~~~~~ 239 (814)
-+.++||+.++.++++.|......-+.++|.+|+||||+|+.+++ ++... ....++.++++.-.
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~--~i~~~~v~~~l~~~~i~~l~l~~l~-------- 255 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLAL--RIAAGDVPPALRNVRLLSLDLGLLQ-------- 255 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHH--HHhhCCCCccccCCeEEEeehhhhh--------
Confidence 356799999999999999876666677999999999999999987 44222 12223333332210
Q ss_pred HHHHhCCCCCCCCChHHHHHHHHHHhccc--CCCcEEEEEeCCCCCc--------hH---HHhhhcccCCCeEEEEEccc
Q 003515 240 VYQHKGYAVPEFQTDEDAINDLERLLKPI--RPEAILLVLDDVWSGS--------ES---LLQKFKFQLPYYKILVTSRS 306 (814)
Q Consensus 240 i~~~l~~~~~~~~~~~~~~~~l~~~l~~l--~~kr~LlVlDdv~~~~--------~~---~~~~~~~~~~gs~iivTtR~ 306 (814)
.. .....+...+++.+++.+ .+++.+|++|++.... .+ ++.+... ...-++|-||..
T Consensus 256 -----ag----~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~-~G~l~~IgaTT~ 325 (852)
T TIGR03345 256 -----AG----ASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA-RGELRTIAATTW 325 (852)
T ss_pred -----cc----cccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh-CCCeEEEEecCH
Confidence 00 001122234444444322 2578999999985321 11 2222211 112456655553
Q ss_pred c-c---cC-------CCCccccCCCCHHHHHHHHHHHcccCCCCCCCC-ChHHHHHHHHHcCCch
Q 003515 307 V-F---PQ-------FGSGYDLKPLNDEAARTLFRYSANLQDGNSYIP-DENLVNKILRACKGCP 359 (814)
Q Consensus 307 ~-~---~~-------~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~-~~~~~~~i~~~~~g~P 359 (814)
. . .. --..+.+++++.++..+++....-......... .++....+++.+.+..
T Consensus 326 ~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 326 AEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred HHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 2 1 11 112789999999999999865432211111111 2566777788776543
No 114
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.94 E-value=6.3e-06 Score=63.46 Aligned_cols=57 Identities=33% Similarity=0.579 Sum_probs=22.4
Q ss_pred CccEEEeecCCCCCCCc-hhccCCCCcCEeecccCCCCCCCccccCCCCCCCEEeccCC
Q 003515 676 SIKKLRITNCHKLSALP-EGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISEC 733 (814)
Q Consensus 676 ~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~ 733 (814)
+|++|++++|. +..+| ..+..+++|++|++++|.....-|..+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 34444444443 22222 23344444444444443332222233444444444444443
No 115
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00033 Score=80.43 Aligned_cols=189 Identities=16% Similarity=0.178 Sum_probs=108.6
Q ss_pred CCCCCCccchhHHHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHh
Q 003515 166 PPVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHK 244 (814)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l 244 (814)
-+++||.+..++.|..++.... ...+.++|..|+||||+|+.+++ .+...... .-...++.-...+.+....
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~--~l~c~~~~-----~~~~~c~~c~~c~~i~~~~ 87 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAK--AVNCTTND-----PKGRPCGTCEMCRAIAEGS 87 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHH--HhcCCCCC-----CCCCCCccCHHHHHHhcCC
Confidence 3467999988888888887655 35678999999999999999986 32211100 0001112222333333221
Q ss_pred CCCC----CCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEccccc------
Q 003515 245 GYAV----PEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------ 308 (814)
Q Consensus 245 ~~~~----~~~~~~~~~~~~l~~~l--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------ 308 (814)
..+. .......+....+.+.+ ....+++-++|+|++..-... ++..+....+.+.+|+++.+..
T Consensus 88 ~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 88 AVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 1110 00001112222333322 112456779999998655433 4444444445667776665431
Q ss_pred cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHH
Q 003515 309 PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTV 364 (814)
Q Consensus 309 ~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 364 (814)
......+.+..++.++....+...+...+.. -.++.+..|++.++|.+..+..
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~egl~---i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGIN---LEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 1122367888999999888888776443321 1367788999999999865444
No 116
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00014 Score=82.66 Aligned_cols=196 Identities=14% Similarity=0.155 Sum_probs=104.7
Q ss_pred CCCCCCccchhHHHHHHHhhCCc-EEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEE-ecCCCCHHHHHHHHHHH
Q 003515 166 PPVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVT-VSQTPNVKGIVQKVYQH 243 (814)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~-v~~~~~~~~~~~~i~~~ 243 (814)
-..+||-+..++.|..++..+.. ..+.++|+.|+||||+|+.+++.--....... ..|.. +.+.+..-...+.+...
T Consensus 15 f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~-~~~~~~~~~~Cg~C~sC~~~~~g 93 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDD-PVYLQEVTEPCGECESCRDFDAG 93 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCc-cccccccCCCCccCHHHHHHhcc
Confidence 35679988888888888876554 55889999999999999988862111111110 00110 00111111111111111
Q ss_pred hCCCCCC----CCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEccccc-----
Q 003515 244 KGYAVPE----FQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF----- 308 (814)
Q Consensus 244 l~~~~~~----~~~~~~~~~~l~~~l--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~----- 308 (814)
-..+... .....+.+..+.+.+ .-..+++-++|+|++..-... ++..+....+.+.+|++|....
T Consensus 94 ~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 94 TSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (620)
T ss_pred CCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 0000000 001111222222222 122456678999998765432 4444444344566665554331
Q ss_pred -cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchh-HHHHH
Q 003515 309 -PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPL-ALTVV 365 (814)
Q Consensus 309 -~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 365 (814)
...+..+++.+++.++....+.+.+...+. .-.++.+..|++.++|..- |+..+
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~i~~~egi---~I~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQMICRAEGI---QIDADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 122347899999999988887766543221 1136788999999999664 44433
No 117
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.92 E-value=0.00052 Score=68.23 Aligned_cols=175 Identities=17% Similarity=0.232 Sum_probs=98.9
Q ss_pred CCCCCCccch-hHHHHHHHhh-C--CcEEEEEEcCCCCCHHHHHHHHhhchhhhccC-CCcEEEEEecCCCCHHHHHHHH
Q 003515 166 PPVTPGLDVP-LQELKLELFK-D--GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF-KDNIFFVTVSQTPNVKGIVQKV 240 (814)
Q Consensus 166 ~~~~vGr~~~-~~~l~~~L~~-~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~~wv~v~~~~~~~~~~~~i 240 (814)
+..++|-..+ .-.....+.. . ....+.|+|..|+|||.|.+++++ ...... ..++++++ ..++...+
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~------~~~f~~~~ 79 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYLS------AEEFIREF 79 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEEE------HHHHHHHH
T ss_pred ccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceeec------HHHHHHHH
Confidence 3445665433 2233333432 2 235689999999999999999998 444332 44566765 35666666
Q ss_pred HHHhCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCch------HHHhhhcc-cCCCeEEEEEcccccc----
Q 003515 241 YQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSE------SLLQKFKF-QLPYYKILVTSRSVFP---- 309 (814)
Q Consensus 241 ~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~~------~~~~~~~~-~~~gs~iivTtR~~~~---- 309 (814)
...+... . ...+...+ + .-=+|++||+..... .+..-+.. ...|.++|+|++....
T Consensus 80 ~~~~~~~-----~----~~~~~~~~---~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~ 146 (219)
T PF00308_consen 80 ADALRDG-----E----IEEFKDRL---R-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSG 146 (219)
T ss_dssp HHHHHTT-----S----HHHHHHHH---C-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTT
T ss_pred HHHHHcc-----c----chhhhhhh---h-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccc
Confidence 6665421 1 12233333 2 334889999965331 12222221 1346789999976521
Q ss_pred ---------CCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHH
Q 003515 310 ---------QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTV 364 (814)
Q Consensus 310 ---------~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 364 (814)
..|..+++++++.++-.+++.+.+...+.. -.+++..-|++.+.+..-.+..
T Consensus 147 ~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~---l~~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 147 LLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE---LPEEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp S-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT-----S-HHHHHHHHHHTTSSHHHHHH
T ss_pred cChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC---CcHHHHHHHHHhhcCCHHHHHH
Confidence 123378999999999999999888554432 2367788888888776655443
No 118
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=0.0013 Score=68.99 Aligned_cols=188 Identities=15% Similarity=0.181 Sum_probs=108.9
Q ss_pred CCCCccchhHHHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhchhh-------------hccCCCcEEEEEecCCCCH
Q 003515 168 VTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQV-------------LGKFKDNIFFVTVSQTPNV 233 (814)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------~~~F~~~~~wv~v~~~~~~ 233 (814)
.++|.+..++.+...+..+. .+...++|..|+||+++|..+++.--- ....++ +.|+.-....+-
T Consensus 5 ~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~~g 83 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQHQG 83 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEeccccccc
Confidence 56899999999999888776 478999999999999999887652100 112344 455542111000
Q ss_pred HHHHHHHHHHhCC--CCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEcc
Q 003515 234 KGIVQKVYQHKGY--AVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSR 305 (814)
Q Consensus 234 ~~~~~~i~~~l~~--~~~~~~~~~~~~~~l~~~l--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR 305 (814)
..+-..-++..+. ..... -..+.++.+.+.+ ....+++-++|+|++..-... ++..+.... .+.+|++|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~-I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQ-IRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred cccchhhhhhcccccccccc-CcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEEC
Confidence 0000111111110 00011 1122334455445 234577889999998665533 444444333 455665555
Q ss_pred ccc------cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHH
Q 003515 306 SVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTV 364 (814)
Q Consensus 306 ~~~------~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 364 (814)
+.. ..-...+.+.++++++..+.+....... ........++..++|.|..+..
T Consensus 162 ~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~------~~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE------ILNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred ChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc------cchhHHHHHHHHcCCCHHHHHH
Confidence 442 2223378999999999999998764211 1122246889999999976554
No 119
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.92 E-value=0.00038 Score=70.66 Aligned_cols=182 Identities=15% Similarity=0.212 Sum_probs=111.1
Q ss_pred hHHHHHHHhh---CCcEEEEEEcCCCCCHHHHHHHHhhchhh-----hccCCCcEEEEEecCCCCHHHHHHHHHHHhCCC
Q 003515 176 LQELKLELFK---DGRQVIVVSAPGGYGKTTLVKKLCKDDQV-----LGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYA 247 (814)
Q Consensus 176 ~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-----~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 247 (814)
++.+.++|.. ...+-+.|||.+|.|||++++++....-. ...++ |+.|.....++...+...|+.+++..
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~P--Vv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIP--VVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCcccc--EEEEecCCCCChHHHHHHHHHHhCcc
Confidence 3444444442 23567999999999999999998863111 11222 66888889999999999999999987
Q ss_pred CCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc-------hHHHhhhcc---cCCCeEEEEEccccccC------C
Q 003515 248 VPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGS-------ESLLQKFKF---QLPYYKILVTSRSVFPQ------F 311 (814)
Q Consensus 248 ~~~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~-------~~~~~~~~~---~~~gs~iivTtR~~~~~------~ 311 (814)
............+...+++. -+--+||+|++.+.- ..++..++. ...=+-|.|-|++.... .
T Consensus 124 ~~~~~~~~~~~~~~~~llr~--~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QL 201 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRR--LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQL 201 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHH--cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHH
Confidence 75555555545555556643 344589999986521 223333332 22335677777765211 1
Q ss_pred CC---ccccCCCCHH-HHHHHHHHHc--ccCCCCCCCCChHHHHHHHHHcCCchhH
Q 003515 312 GS---GYDLKPLNDE-AARTLFRYSA--NLQDGNSYIPDENLVNKILRACKGCPLA 361 (814)
Q Consensus 312 ~~---~~~l~~L~~~-~~~~Lf~~~a--~~~~~~~~~~~~~~~~~i~~~~~g~Pla 361 (814)
.. ++.++.-+.+ +...|+.... ..-..++.-...+.++.|...++|+.=-
T Consensus 202 a~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~ 257 (302)
T PF05621_consen 202 ASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGE 257 (302)
T ss_pred HhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHH
Confidence 11 3444444433 4455554322 1222223334478999999999998643
No 120
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.00036 Score=77.20 Aligned_cols=173 Identities=17% Similarity=0.168 Sum_probs=103.7
Q ss_pred CCCCCCccchhHHHHHHHhhCCc-EEEEEEcCCCCCHHHHHHHHhhchhhhcc------CCC---------------cEE
Q 003515 166 PPVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVLGK------FKD---------------NIF 223 (814)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~---------------~~~ 223 (814)
-++++|.+..++.+.+++..+.. +.+.++|+.|+||||+|+.+++. +... -++ .++
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~--l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~ 93 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKA--LNCQNPTEDQEPCNQCASCKEISSGTSLDVL 93 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHH--hcCCCcccCCCCCcccHHHHHHhcCCCCceE
Confidence 35679999999999988886654 66889999999999999988762 2110 000 011
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhcccCCC
Q 003515 224 FVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPY 297 (814)
Q Consensus 224 wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~g 297 (814)
++.-..... .+....+.+.+ ....+++-++|+|++...... ++..+....+.
T Consensus 94 ~i~g~~~~g----------------------id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~ 151 (451)
T PRK06305 94 EIDGASHRG----------------------IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQH 151 (451)
T ss_pred EeeccccCC----------------------HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCC
Confidence 111111111 11122222222 112366778999998654432 34444444446
Q ss_pred eEEEEEccccc------cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchh-HHHHH
Q 003515 298 YKILVTSRSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPL-ALTVV 365 (814)
Q Consensus 298 s~iivTtR~~~------~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 365 (814)
+.+|++|.... ..-...+++.++++++....+...+...+. .-.++.++.|++.++|.+- |+..+
T Consensus 152 ~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~---~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 152 VKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI---ETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred ceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 66776664431 112337899999999988888776543322 1136778899999999764 44443
No 121
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00039 Score=78.59 Aligned_cols=190 Identities=14% Similarity=0.125 Sum_probs=107.0
Q ss_pred CCCCCccchhHHHHHHHhhCCc-EEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhC
Q 003515 167 PVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKG 245 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~ 245 (814)
+++||.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++ .+...... -+..++.. .....+...-+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk--~l~c~~~~--~~~pCg~C----~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILAR--SLNCAQGP--TATPCGVC----ESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH--HhccccCC--CCCccccc----HHHHHhhcccC
Confidence 4679999989999999887664 4578999999999999999886 22211000 00000000 01111110000
Q ss_pred -------CCCCCCCChHHHHHHHHHHhcc--cCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEccccc----
Q 003515 246 -------YAVPEFQTDEDAINDLERLLKP--IRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF---- 308 (814)
Q Consensus 246 -------~~~~~~~~~~~~~~~l~~~l~~--l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~---- 308 (814)
.+... ....+...++...... ..+++-++|+|++...... ++..+....+.+.+|++|.+..
T Consensus 85 ~~~dvieidaas-~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~ 163 (584)
T PRK14952 85 GSIDVVELDAAS-HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLP 163 (584)
T ss_pred CCceEEEecccc-ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHH
Confidence 00000 0111222223222211 2456679999999766543 4444444444666666664431
Q ss_pred --cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchh-HHHHHHHH
Q 003515 309 --PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPL-ALTVVGGS 368 (814)
Q Consensus 309 --~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~~ 368 (814)
..-+..+++..++.++..+.+.+.+...+. .-.++....|++.++|.+- |+..+-.+
T Consensus 164 TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi---~i~~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 164 TIRSRTHHYPFRLLPPRTMRALIARICEQEGV---VVDDAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred HHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 122347899999999988888776644332 1135677889999999874 44444443
No 122
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.00023 Score=78.62 Aligned_cols=152 Identities=18% Similarity=0.202 Sum_probs=92.2
Q ss_pred CCCCCCccchhHHHHHHHh------hCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHH
Q 003515 166 PPVTPGLDVPLQELKLELF------KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQK 239 (814)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~ 239 (814)
+++.+|.++-+++|++++. ..+-+++..+|++|||||++|+.++. .....| |-++|+...|..+|-.-
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF----fRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF----FRFSVGGMTDVAEIKGH 483 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce----EEEeccccccHHhhccc
Confidence 4566999999999999997 23468999999999999999999997 554444 34566666665543211
Q ss_pred HHHHhCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc--------hHHHhhhcccC-------------CCe
Q 003515 240 VYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGS--------ESLLQKFKFQL-------------PYY 298 (814)
Q Consensus 240 i~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~--------~~~~~~~~~~~-------------~gs 298 (814)
=-..+| ... .++-+.++..+...=|+.+|.|+... ..+++-+.+.. .=|
T Consensus 484 RRTYVG------AMP----GkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLS 553 (906)
T KOG2004|consen 484 RRTYVG------AMP----GKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLS 553 (906)
T ss_pred ceeeec------cCC----hHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchh
Confidence 101111 011 22334444456777899999985432 11333332211 136
Q ss_pred EEEEEcc-ccc-c------CCCCccccCCCCHHHHHHHHHHHc
Q 003515 299 KILVTSR-SVF-P------QFGSGYDLKPLNDEAARTLFRYSA 333 (814)
Q Consensus 299 ~iivTtR-~~~-~------~~~~~~~l~~L~~~~~~~Lf~~~a 333 (814)
+|++... +.. . .--..+++.+...+|-.++-.++.
T Consensus 554 kVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 554 KVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred heEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 7775443 321 1 111267888888888777766654
No 123
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00055 Score=76.22 Aligned_cols=172 Identities=15% Similarity=0.176 Sum_probs=103.7
Q ss_pred CCCCCccchhHHHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhchhhhc----c-CCCc---------------EEEE
Q 003515 167 PVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLG----K-FKDN---------------IFFV 225 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~-F~~~---------------~~wv 225 (814)
..++|-+.-++.+.+++.... .+.+.++|+.|+||||+|+.++. .+.. . .+|+ ++++
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk--~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAK--VLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH--HhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 457899999999988888655 45677899999999999999876 2210 0 1111 2222
Q ss_pred EecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhc--ccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeE
Q 003515 226 TVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLK--PIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYK 299 (814)
Q Consensus 226 ~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~--~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~ 299 (814)
+.+.. ...+....+...+. -..+++-++|+|++..-... ++..+....+...
T Consensus 94 daas~----------------------~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 94 DAASN----------------------RGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred eCccC----------------------CCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 21111 11122223333331 22467789999999765432 4444444444555
Q ss_pred EEEEccccc------cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHHH
Q 003515 300 ILVTSRSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVV 365 (814)
Q Consensus 300 iivTtR~~~------~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 365 (814)
+|++|.... ......+.+.+++.++....+...+-..+. .-.++.+..|++.++|.+..+...
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi---~id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI---EYEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 555553321 122347889999999988888876644332 123567888999999987654443
No 124
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.88 E-value=0.00073 Score=74.75 Aligned_cols=160 Identities=14% Similarity=0.126 Sum_probs=98.9
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhcc-CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhc
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGK-FKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLK 266 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 266 (814)
...+.|+|..|+|||+|++++++ .+... -..++++++ ..++...+...++.. ......+.+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~-------~~~~~~~~~~~- 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYMS------GDEFARKAVDILQKT-------HKEIEQFKNEI- 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEE------HHHHHHHHHHHHHHh-------hhHHHHHHHHh-
Confidence 35689999999999999999988 44332 233354554 346667776665421 01122222222
Q ss_pred ccCCCcEEEEEeCCCCCc--h----HHHhhhcc-cCCCeEEEEEccccc-------------cCCCCccccCCCCHHHHH
Q 003515 267 PIRPEAILLVLDDVWSGS--E----SLLQKFKF-QLPYYKILVTSRSVF-------------PQFGSGYDLKPLNDEAAR 326 (814)
Q Consensus 267 ~l~~kr~LlVlDdv~~~~--~----~~~~~~~~-~~~gs~iivTtR~~~-------------~~~~~~~~l~~L~~~~~~ 326 (814)
+ +.-+||+||+.... + .+..-+.. ...|..||+|+.... ...|..+.+++++.++-.
T Consensus 205 --~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~ 281 (450)
T PRK14087 205 --C-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTAT 281 (450)
T ss_pred --c-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHH
Confidence 2 34488999995432 1 12222221 123557888876531 113447789999999999
Q ss_pred HHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHHHHH
Q 003515 327 TLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGG 367 (814)
Q Consensus 327 ~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 367 (814)
+++.+.+...+.. ..-.+++..-|++.++|.|-.+.-+..
T Consensus 282 ~iL~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 282 AIIKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 9999887543211 122378899999999999977665543
No 125
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.88 E-value=1.5e-06 Score=95.98 Aligned_cols=175 Identities=19% Similarity=0.232 Sum_probs=99.2
Q ss_pred hcCCCCCCcEEEeecccccCcccccccc-cCCCCCCCEEEecCCCCCCc-cccccccccccceecccccccccCcccccc
Q 003515 570 FLEKMDKLKVMIVTNYGFFPAELSNIQV-FGALSNLKRIRLEHVSLPSL-TTVRMKHLQNVSLVMCNVDQVVQNSTFHFS 647 (814)
Q Consensus 570 ~l~~l~~Lr~L~l~~~~~~~~~~~~l~~-l~~l~~L~~L~l~~n~l~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 647 (814)
.+..+++|..|++.+|.+-. +.. +..+++|++|++++|.|..+ ....+..|+.|++.+|.+..+....
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~-----i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~----- 159 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEK-----IENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLE----- 159 (414)
T ss_pred ccccccceeeeeccccchhh-----cccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccCCc-----
Confidence 35667777777777654321 112 45677777777777777776 4455666777777777665543321
Q ss_pred cCCCCccEEecccCcCcCcCCcc-ccCCCCccEEEeecCCCCCCCchhccCCCCcCEeecccCCCCCCCccccCCCCC--
Q 003515 648 DAFPNLLEIDIDYCNDLIELPDG-LCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSN-- 724 (814)
Q Consensus 648 ~~l~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~L~~-- 724 (814)
.+++|+.+++++|.+...-+ . ...+.+|+.+.+.+|.+. .+ ..+..+..+..+++..|.....- .+..+..
T Consensus 160 -~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~-~i-~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~ 233 (414)
T KOG0531|consen 160 -SLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIR-EI-EGLDLLKKLVLLSLLDNKISKLE--GLNELVMLH 233 (414)
T ss_pred -cchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchh-cc-cchHHHHHHHHhhcccccceecc--CcccchhHH
Confidence 36677777777776443222 1 355666777777765422 22 12333444444455544322111 1122222
Q ss_pred CCEEeccCCCCCCccchhhcCCCCCCEEeccCCCCCC
Q 003515 725 LNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFE 761 (814)
Q Consensus 725 L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~ 761 (814)
|+.+++.+|+ +..++.++..+..+..|++.+|.+..
T Consensus 234 L~~l~l~~n~-i~~~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 234 LRELYLSGNR-ISRSPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred HHHHhcccCc-cccccccccccccccccchhhccccc
Confidence 7777777763 44444567777778888887777653
No 126
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.87 E-value=9.6e-05 Score=87.33 Aligned_cols=148 Identities=12% Similarity=0.123 Sum_probs=84.9
Q ss_pred CCCCCccchhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhhc-----cC-CCcEEEEEecCCCCHHHHHHHH
Q 003515 167 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLG-----KF-KDNIFFVTVSQTPNVKGIVQKV 240 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----~F-~~~~~wv~v~~~~~~~~~~~~i 240 (814)
+.++||+.+++++++.|......-+.++|.+|+|||++|+.+++ ++.. .+ ...++.+++ . .+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~--~~~~~~~p~~l~~~~~~~~~~------~----~l 249 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLAL--RIAEGKVPENLKNAKIYSLDM------G----SL 249 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHH--HHHhCCCchhhcCCeEEEecH------H----HH
Confidence 46799999999999999866656678999999999999999987 4322 12 232333321 1 11
Q ss_pred HHHhCCCCCCCCChHHHHHHHHHHhccc-CCCcEEEEEeCCCCCc---------hHHHhhhccc-CCC-eEEEE-Ecccc
Q 003515 241 YQHKGYAVPEFQTDEDAINDLERLLKPI-RPEAILLVLDDVWSGS---------ESLLQKFKFQ-LPY-YKILV-TSRSV 307 (814)
Q Consensus 241 ~~~l~~~~~~~~~~~~~~~~l~~~l~~l-~~kr~LlVlDdv~~~~---------~~~~~~~~~~-~~g-s~iiv-TtR~~ 307 (814)
..... ...+....++.+++.+ +.++.+|++|++..-. .+....+.+. ..| -++|- ||+.+
T Consensus 250 ~a~~~-------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e 322 (731)
T TIGR02639 250 LAGTK-------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEE 322 (731)
T ss_pred hhhcc-------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHH
Confidence 11000 0112234455555333 3457899999985211 1111112211 123 34444 44422
Q ss_pred c-------c---CCCCccccCCCCHHHHHHHHHHHc
Q 003515 308 F-------P---QFGSGYDLKPLNDEAARTLFRYSA 333 (814)
Q Consensus 308 ~-------~---~~~~~~~l~~L~~~~~~~Lf~~~a 333 (814)
. . .--..++++.++.++..+++....
T Consensus 323 ~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 323 YKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 1 0 001268899999999999998654
No 127
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00051 Score=78.74 Aligned_cols=171 Identities=15% Similarity=0.187 Sum_probs=103.7
Q ss_pred CCCCCccchhHHHHHHHhhCCc-EEEEEEcCCCCCHHHHHHHHhhchhh---------------------hccCCCcEEE
Q 003515 167 PVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQV---------------------LGKFKDNIFF 224 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~F~~~~~w 224 (814)
+.++|.+..++.|..++..+.. +.+.++|+.|+||||+|+.+...-.. ..+|+ +..
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n--~~~ 94 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN--IHE 94 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc--eEE
Confidence 4679999999999999886664 56889999999999999888762110 01222 223
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEE
Q 003515 225 VTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKI 300 (814)
Q Consensus 225 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~i 300 (814)
++.++...+.++. .+++++.. .-..+++-++|+|++..-... ++..+......+.+
T Consensus 95 ld~~~~~~vd~Ir-~li~~~~~-------------------~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tif 154 (614)
T PRK14971 95 LDAASNNSVDDIR-NLIEQVRI-------------------PPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIF 154 (614)
T ss_pred ecccccCCHHHHH-HHHHHHhh-------------------CcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEE
Confidence 3322222222211 11111110 112355668899998766543 34444443445666
Q ss_pred EEEccccc------cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHH
Q 003515 301 LVTSRSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLAL 362 (814)
Q Consensus 301 ivTtR~~~------~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai 362 (814)
|++|.... ..-+..+++.+++.++....+...+...+. .-..+.+..|++.++|..--+
T Consensus 155 IL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi---~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 155 ILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI---TAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 66554331 222347899999999999888876644332 123567889999999977533
No 128
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.85 E-value=0.00013 Score=79.08 Aligned_cols=165 Identities=14% Similarity=0.199 Sum_probs=96.1
Q ss_pred CCCCCCccchhHHHHHHHhh-------------CCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCC
Q 003515 166 PPVTPGLDVPLQELKLELFK-------------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPN 232 (814)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~ 232 (814)
.+++.|+++.+++|.+.+.. ...+-+.++|++|+|||++|+++++ .....| +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~------~~v~~--- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF------IRVVG--- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE------Eecch---
Confidence 35679999999999887751 1245689999999999999999998 333332 22221
Q ss_pred HHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhccc-CCCcEEEEEeCCCCCc-----------h----HHHhh---hcc
Q 003515 233 VKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPI-RPEAILLVLDDVWSGS-----------E----SLLQK---FKF 293 (814)
Q Consensus 233 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~l-~~kr~LlVlDdv~~~~-----------~----~~~~~---~~~ 293 (814)
.++... ..+ .....+...++.. ...+.+|+|||++... . .+... +..
T Consensus 190 -~~l~~~---~~g----------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~ 255 (364)
T TIGR01242 190 -SELVRK---YIG----------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDG 255 (364)
T ss_pred -HHHHHH---hhh----------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhC
Confidence 111111 011 1111222233111 3467899999986421 0 11111 111
Q ss_pred --cCCCeEEEEEccccc------c---CCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCch
Q 003515 294 --QLPYYKILVTSRSVF------P---QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCP 359 (814)
Q Consensus 294 --~~~gs~iivTtR~~~------~---~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P 359 (814)
...+..||.||.... . .....+.++..+.++..++|..++....... ......+++.+.|..
T Consensus 256 ~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~----~~~~~~la~~t~g~s 328 (364)
T TIGR01242 256 FDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE----DVDLEAIAKMTEGAS 328 (364)
T ss_pred CCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc----cCCHHHHHHHcCCCC
Confidence 124677888887541 1 1233688999999999999998764433211 112466777777753
No 129
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.83 E-value=0.0024 Score=70.37 Aligned_cols=152 Identities=16% Similarity=0.221 Sum_probs=92.2
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccC-CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhc
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF-KDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLK 266 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 266 (814)
...+.|+|..|+|||+|++++++ .+.... ...+++++. .++...+...+... . ...+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~----~~~~~~~~- 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVSS------EKFTNDFVNALRNN-----K----MEEFKEKY- 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----C----HHHHHHHH-
Confidence 35689999999999999999998 444433 344666653 34445555554321 1 12222222
Q ss_pred ccCCCcEEEEEeCCCCCc------hHHHhhhcc-cCCCeEEEEEccccc-------------cCCCCccccCCCCHHHHH
Q 003515 267 PIRPEAILLVLDDVWSGS------ESLLQKFKF-QLPYYKILVTSRSVF-------------PQFGSGYDLKPLNDEAAR 326 (814)
Q Consensus 267 ~l~~kr~LlVlDdv~~~~------~~~~~~~~~-~~~gs~iivTtR~~~-------------~~~~~~~~l~~L~~~~~~ 326 (814)
++ .-+|||||+.... +.+...+.. ...|..+|+|+.... ...+..+.+++.+.++-.
T Consensus 198 --~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~ 274 (405)
T TIGR00362 198 --RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRL 274 (405)
T ss_pred --Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHH
Confidence 21 3488999996422 112222221 123556888886431 111236888999999999
Q ss_pred HHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHH
Q 003515 327 TLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 363 (814)
Q Consensus 327 ~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 363 (814)
+++.+.+..... .-.+++...|++.+.|.+-.+.
T Consensus 275 ~il~~~~~~~~~---~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 275 AILQKKAEEEGL---ELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHHHcCC---CCCHHHHHHHHHhcCCCHHHHH
Confidence 999888754322 1137788889999988776444
No 130
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.82 E-value=0.00014 Score=77.55 Aligned_cols=140 Identities=15% Similarity=0.133 Sum_probs=81.3
Q ss_pred CCCCCCCccchhHHHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHH
Q 003515 165 PPPVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQH 243 (814)
Q Consensus 165 ~~~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~ 243 (814)
.-++++|.+...+.+..++.... ..++.++|++|+||||+|+.+++ ... ..+..++.+. ..... .+..+..
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~--~~~----~~~~~i~~~~-~~~~~-i~~~l~~ 90 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCN--EVG----AEVLFVNGSD-CRIDF-VRNRLTR 90 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHH--HhC----ccceEeccCc-ccHHH-HHHHHHH
Confidence 34577999999999999888655 46777799999999999999987 322 1234555544 22111 1111111
Q ss_pred hCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCC-chH---HHhh-hcccCCCeEEEEEcccccc------CCC
Q 003515 244 KGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSG-SES---LLQK-FKFQLPYYKILVTSRSVFP------QFG 312 (814)
Q Consensus 244 l~~~~~~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~-~~~---~~~~-~~~~~~gs~iivTtR~~~~------~~~ 312 (814)
+ .... ...+.+-+||+||+... ... .+.. +.....++.+|+||..... ...
T Consensus 91 ~-----------------~~~~-~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 91 F-----------------ASTV-SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred H-----------------HHhh-cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 0 0000 01244568999999755 222 2222 3333456788888865421 111
Q ss_pred CccccCCCCHHHHHHHHH
Q 003515 313 SGYDLKPLNDEAARTLFR 330 (814)
Q Consensus 313 ~~~~l~~L~~~~~~~Lf~ 330 (814)
..+.++..+.++..+++.
T Consensus 153 ~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred eEEEeCCCCHHHHHHHHH
Confidence 245666666666665544
No 131
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.82 E-value=0.00025 Score=72.77 Aligned_cols=159 Identities=17% Similarity=0.253 Sum_probs=98.5
Q ss_pred CCCCCCccchhHHHHHHHhhCC---cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHH
Q 003515 166 PPVTPGLDVPLQELKLELFKDG---RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQ 242 (814)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~ 242 (814)
.+.+.+|+.++..+..++.... +..|.|+|-.|.|||.+.+++.+.. . - .-.|+++-+.++...++..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n--~--~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--N--L--ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--C--C--cceeeehHHhccHHHHHHHHHH
Confidence 4567899999999988887444 3456899999999999999999833 1 1 2349999999999999999999
Q ss_pred HhCC-CCCCCCChH--HHHHHHHHHh-c--cc--CCCcEEEEEeCCCCCch---HHHhhhc-----ccCCCeEEEEEccc
Q 003515 243 HKGY-AVPEFQTDE--DAINDLERLL-K--PI--RPEAILLVLDDVWSGSE---SLLQKFK-----FQLPYYKILVTSRS 306 (814)
Q Consensus 243 ~l~~-~~~~~~~~~--~~~~~l~~~l-~--~l--~~kr~LlVlDdv~~~~~---~~~~~~~-----~~~~gs~iivTtR~ 306 (814)
..+. +.+...... +....+...+ + .. +++.++||||+++...+ .++..+. ...+ .-+|+++--
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~-~i~iils~~ 157 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEP-TIVIILSAP 157 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCC-ceEEEEecc
Confidence 9852 222111111 1122222222 1 11 35689999999854332 1222221 1223 334444432
Q ss_pred c-----ccCCCC----ccccCCCCHHHHHHHHHH
Q 003515 307 V-----FPQFGS----GYDLKPLNDEAARTLFRY 331 (814)
Q Consensus 307 ~-----~~~~~~----~~~l~~L~~~~~~~Lf~~ 331 (814)
. ....|+ ++..+.-+.+|-..++.+
T Consensus 158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred ccHHHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 2 111232 456777888888888864
No 132
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.81 E-value=0.00019 Score=71.60 Aligned_cols=177 Identities=16% Similarity=0.150 Sum_probs=110.4
Q ss_pred CCCCCCCccchhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHh
Q 003515 165 PPPVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHK 244 (814)
Q Consensus 165 ~~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l 244 (814)
.-++++|-+..+.-+.+.+.....+....+|++|.|||+-|..++..---.+.|++++.=.++|+..... +.+.=.+.
T Consensus 34 t~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~Kik~- 111 (346)
T KOG0989|consen 34 TFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREKIKN- 111 (346)
T ss_pred cHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhhhcC-
Confidence 3456789888888888888887788999999999999999888876322246788877655665543332 11100000
Q ss_pred CCCCCCCCChHHHHHHHHHHhccc---CCCc-EEEEEeCCCCCchHHHhhhc----ccCCCeEEEEEcccccc------C
Q 003515 245 GYAVPEFQTDEDAINDLERLLKPI---RPEA-ILLVLDDVWSGSESLLQKFK----FQLPYYKILVTSRSVFP------Q 310 (814)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~l~~l---~~kr-~LlVlDdv~~~~~~~~~~~~----~~~~gs~iivTtR~~~~------~ 310 (814)
...+.-..... .-++ -.||||+++.-..+-|..+. .....++.|..+..... .
T Consensus 112 -------------fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 112 -------------FAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred -------------HHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 01111111000 1233 47889999766544444432 33445665555443321 1
Q ss_pred CCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCch
Q 003515 311 FGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCP 359 (814)
Q Consensus 311 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P 359 (814)
-..-|..++|.+++..+-++..+...+.. -..+..+.|++.++|--
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~---~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVD---IDDDALKLIAKISDGDL 224 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCcH
Confidence 12268899999999999998888555442 23678899999999854
No 133
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.78 E-value=0.00014 Score=79.13 Aligned_cols=163 Identities=13% Similarity=0.171 Sum_probs=92.8
Q ss_pred CCCCCccchhHHHHHHHhh-------------CCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCH
Q 003515 167 PVTPGLDVPLQELKLELFK-------------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNV 233 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~ 233 (814)
+++.|+++.++++.+.+.. ...+-|.++|++|+|||++|+++++ +.... |+.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~--~~~~~------~i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNAT------FIRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH--HhCCC------EEEeeh----
Confidence 4678999999999887641 2345689999999999999999997 33222 333321
Q ss_pred HHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhccc-CCCcEEEEEeCCCCC-----------chH----HHhhh---cc-
Q 003515 234 KGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPI-RPEAILLVLDDVWSG-----------SES----LLQKF---KF- 293 (814)
Q Consensus 234 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~l-~~kr~LlVlDdv~~~-----------~~~----~~~~~---~~- 293 (814)
.++ .....+ .. ...++.+++.. ...+.+|+|||++.. ... +...+ ..
T Consensus 199 ~~l----~~~~~g------~~---~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~ 265 (389)
T PRK03992 199 SEL----VQKFIG------EG---ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF 265 (389)
T ss_pred HHH----hHhhcc------ch---HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcccc
Confidence 111 111100 01 11222233111 356789999998542 111 11111 11
Q ss_pred -cCCCeEEEEEccccc------c---CCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCc
Q 003515 294 -QLPYYKILVTSRSVF------P---QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGC 358 (814)
Q Consensus 294 -~~~gs~iivTtR~~~------~---~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 358 (814)
...+..||.||.... . .....+.++..+.++-.++|+.+......... .....+++.+.|.
T Consensus 266 ~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~----~~~~~la~~t~g~ 336 (389)
T PRK03992 266 DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD----VDLEELAELTEGA 336 (389)
T ss_pred CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc----CCHHHHHHHcCCC
Confidence 113566777776531 1 12336889999999999999887643322111 1245666777664
No 134
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.77 E-value=0.0093 Score=65.85 Aligned_cols=146 Identities=17% Similarity=0.233 Sum_probs=87.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhccc
Q 003515 189 QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPI 268 (814)
Q Consensus 189 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~l 268 (814)
..+.|+|..|+|||+|++++++ .+... ...+++++. .++...+...+... ....+....
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~--~l~~~-~~~v~yi~~------~~f~~~~~~~l~~~---------~~~~f~~~~--- 200 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVH--ALRES-GGKILYVRS------ELFTEHLVSAIRSG---------EMQRFRQFY--- 200 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHH--HHHHc-CCCEEEeeH------HHHHHHHHHHHhcc---------hHHHHHHHc---
Confidence 5688999999999999999998 44332 233556653 34555555554321 112233322
Q ss_pred CCCcEEEEEeCCCCCc------hHHHhhhcc-cCCCeEEEEEccccc-------------cCCCCccccCCCCHHHHHHH
Q 003515 269 RPEAILLVLDDVWSGS------ESLLQKFKF-QLPYYKILVTSRSVF-------------PQFGSGYDLKPLNDEAARTL 328 (814)
Q Consensus 269 ~~kr~LlVlDdv~~~~------~~~~~~~~~-~~~gs~iivTtR~~~-------------~~~~~~~~l~~L~~~~~~~L 328 (814)
.+.-+|++||+.... +.+...+.. ...|..||+||.... ...|..+.+.+++.++-.++
T Consensus 201 -~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~i 279 (445)
T PRK12422 201 -RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSF 279 (445)
T ss_pred -ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHH
Confidence 234488899985432 112222221 124567888886431 12344788999999999999
Q ss_pred HHHHcccCCCCCCCCChHHHHHHHHHcCCch
Q 003515 329 FRYSANLQDGNSYIPDENLVNKILRACKGCP 359 (814)
Q Consensus 329 f~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P 359 (814)
+.+.+...+. .-.+++..-|++.+.|.-
T Consensus 280 L~~k~~~~~~---~l~~evl~~la~~~~~di 307 (445)
T PRK12422 280 LERKAEALSI---RIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHHcCC---CCCHHHHHHHHHhcCCCH
Confidence 9887744322 112667777877777543
No 135
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.00078 Score=76.26 Aligned_cols=185 Identities=14% Similarity=0.190 Sum_probs=105.6
Q ss_pred CCCCCCccchhHHHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhchhhhc---cCCCcEEEEEecCCCCHHHHHHHHH
Q 003515 166 PPVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLG---KFKDNIFFVTVSQTPNVKGIVQKVY 241 (814)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~~wv~v~~~~~~~~~~~~i~ 241 (814)
-.+++|-+..++.+..++.... .+.+.++|+.|+||||+|+.+++.--... .++|+ ...+- +.+.
T Consensus 15 f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~-------~C~~C----~~i~ 83 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCG-------ECSSC----KSID 83 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCc-------cchHH----HHHH
Confidence 3567999988999999888655 45688999999999999999987211110 11111 11111 1111
Q ss_pred HHhCCCC---C-CCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEccccc---
Q 003515 242 QHKGYAV---P-EFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF--- 308 (814)
Q Consensus 242 ~~l~~~~---~-~~~~~~~~~~~l~~~l--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~--- 308 (814)
..-..+. . ......+.+..+.+.+ .-..+++-++|+|++..-... ++..+....+.+.+|++|....
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 1000000 0 0001112222222222 122466778999999766543 3444444444567766664431
Q ss_pred ---cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHH
Q 003515 309 ---PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTV 364 (814)
Q Consensus 309 ---~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 364 (814)
..-...+++.+++.++..+.+...+...+. .-.++.+..|++.++|.+..+..
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi---~id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI---KYEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 112236889999999988888877644332 12367788899999998854433
No 136
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.77 E-value=5.1e-05 Score=80.06 Aligned_cols=94 Identities=15% Similarity=0.121 Sum_probs=59.8
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCC--CCHHHHHHHHHHHhCCCCCCCCChH--HHHHHHH
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQT--PNVKGIVQKVYQHKGYAVPEFQTDE--DAINDLE 262 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~--~~~~~~~~~i~~~l~~~~~~~~~~~--~~~~~l~ 262 (814)
.-..++|+|.+|+|||||++.+++... ..+|+. ..|+.+.+. .++.++++.+...+-....+.+... .....+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv-~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEV-ELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc-ccCCce-EEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 346789999999999999999998422 236887 559998855 7899999988543321111111111 1111111
Q ss_pred HHhcc--cCCCcEEEEEeCCCC
Q 003515 263 RLLKP--IRPEAILLVLDDVWS 282 (814)
Q Consensus 263 ~~l~~--l~~kr~LlVlDdv~~ 282 (814)
+..++ -++++.+|++|++..
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhH
Confidence 11111 268999999999843
No 137
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.74 E-value=0.00088 Score=70.77 Aligned_cols=191 Identities=15% Similarity=0.176 Sum_probs=114.0
Q ss_pred CCCCCCCCccchhHHHHHHHh----hCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHH
Q 003515 164 DPPPVTPGLDVPLQELKLELF----KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQK 239 (814)
Q Consensus 164 ~~~~~~vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~ 239 (814)
.++..++||+.|++.+.+++. ....+-+-|.|-+|.|||.+...++.+..-...=.. +.++++..-.....++..
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~-~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPV-TVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccce-eEEEeeccccchHHHHHH
Confidence 356678999999999988887 345778999999999999999999875332222122 457777766778888888
Q ss_pred HHHHhCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc----hHHHhhhcc-cCCCeEEEEEcccc-------
Q 003515 240 VYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGS----ESLLQKFKF-QLPYYKILVTSRSV------- 307 (814)
Q Consensus 240 i~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~----~~~~~~~~~-~~~gs~iivTtR~~------- 307 (814)
|...+...........+....+...... ....+|+|+|.++... ..+...|.+ ..+++++|+.--..
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q-~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQ-SKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhc-ccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 8877722211111222333333333321 2257999999985422 112333332 34667655432211
Q ss_pred --------ccCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCc
Q 003515 308 --------FPQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGC 358 (814)
Q Consensus 308 --------~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 358 (814)
....+..+..++.+.++-.++|..+...... ........+.+++++.|.
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t--~~~~~~Aie~~ArKvaa~ 361 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEEST--SIFLNAAIELCARKVAAP 361 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccc--cccchHHHHHHHHHhccC
Confidence 0112236778899999999999887633222 111233445555555443
No 138
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00085 Score=76.70 Aligned_cols=190 Identities=17% Similarity=0.178 Sum_probs=105.4
Q ss_pred CCCCCCccchhHHHHHHHhhCCc-EEEEEEcCCCCCHHHHHHHHhhchhhhc-cCCCcEEEEEecCCCCHHHHHHHHHHH
Q 003515 166 PPVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVLG-KFKDNIFFVTVSQTPNVKGIVQKVYQH 243 (814)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~~wv~v~~~~~~~~~~~~i~~~ 243 (814)
-+++||.+..++.|..++..... +.+.++|..|+||||+|+.+++. +.. +... ...+..-.....|...
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~--l~c~~~~~-------~~~c~~c~~c~~i~~g 85 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKA--LNCEQGLT-------AEPCNVCPPCVEITEG 85 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHh--hcCCCCCC-------CCCCCccHHHHHHhcC
Confidence 35679999888999888886664 56789999999999999988762 211 0000 0000000111111100
Q ss_pred hCCCCC----CCCChHHHHHHHHHHhc--ccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEccccc-----
Q 003515 244 KGYAVP----EFQTDEDAINDLERLLK--PIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF----- 308 (814)
Q Consensus 244 l~~~~~----~~~~~~~~~~~l~~~l~--~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~----- 308 (814)
-..+.. ......+.+..+...++ -..+++-++|+|++..-... ++..+....+.+.+|++|.+..
T Consensus 86 ~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 86 RSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred CCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHH
Confidence 000000 00011122223333221 12456678999999765532 4444444445667776664432
Q ss_pred -cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCch-hHHHHHHH
Q 003515 309 -PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCP-LALTVVGG 367 (814)
Q Consensus 309 -~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~~ 367 (814)
..-...++++.++.++....+...+...+. .-.++....|++.++|.. .|+..+-.
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~egi---~i~~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEGI---SISDAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 112236889999999988887766533322 113677888999999976 45554433
No 139
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.72 E-value=0.0015 Score=74.31 Aligned_cols=185 Identities=19% Similarity=0.179 Sum_probs=102.7
Q ss_pred CCCCCCccchhHHHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhchhhhc-cCCCcEEEEEecCCCCHHHHHHHHHHH
Q 003515 166 PPVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLG-KFKDNIFFVTVSQTPNVKGIVQKVYQH 243 (814)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~~wv~v~~~~~~~~~~~~i~~~ 243 (814)
=++++|.+..++.+.+++.... .+.+.++|+.|+||||+|+.+.+ .+.. +-.. ..+++.-.....+...
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAk--al~c~~~~~-------~~pC~~C~~C~~i~~g 85 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAK--AVNCLNPPD-------GEPCNECEICKAITNG 85 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH--HhcCCCCCC-------CCCCCccHHHHHHhcC
Confidence 3567999999999999888655 56678899999999999998876 2211 0000 0011111111111111
Q ss_pred hCCCCCC----CCChHHHHHHHHHHhc--ccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEccccccC---
Q 003515 244 KGYAVPE----FQTDEDAINDLERLLK--PIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVFPQ--- 310 (814)
Q Consensus 244 l~~~~~~----~~~~~~~~~~l~~~l~--~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~~~--- 310 (814)
...+... .....+.+..+..... -..++.-++|+|++..-... ++..+....+...+|++|.....-
T Consensus 86 ~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 86 SLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHH
Confidence 0000000 0011122223333221 12567778999999766543 333333333345555555433211
Q ss_pred ---CCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHH
Q 003515 311 ---FGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLAL 362 (814)
Q Consensus 311 ---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai 362 (814)
-...+++.+++.++..+.+...+...+. .-.++....|++.++|.+.-+
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi---~i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGI---EYEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 1226788899999988888876643332 113567888999999987543
No 140
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.72 E-value=0.0009 Score=73.96 Aligned_cols=175 Identities=17% Similarity=0.193 Sum_probs=103.5
Q ss_pred CCCCCCccchhH--HHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhchhhhcc-CCCcEEEEEecCCCCHHHHHHHHH
Q 003515 166 PPVTPGLDVPLQ--ELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLGK-FKDNIFFVTVSQTPNVKGIVQKVY 241 (814)
Q Consensus 166 ~~~~vGr~~~~~--~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~~wv~v~~~~~~~~~~~~i~ 241 (814)
+..++|-..... ...+.....+ ...+.|+|.+|+|||+|++++++ .+... ....++|++. .++...+.
T Consensus 105 dnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~------~~f~~~~~ 176 (440)
T PRK14088 105 ENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLV 176 (440)
T ss_pred cccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHH
Confidence 445567443322 2223332222 34699999999999999999998 44443 3445667754 45666666
Q ss_pred HHhCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc------hHHHhhhcc-cCCCeEEEEEccccc------
Q 003515 242 QHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGS------ESLLQKFKF-QLPYYKILVTSRSVF------ 308 (814)
Q Consensus 242 ~~l~~~~~~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~------~~~~~~~~~-~~~gs~iivTtR~~~------ 308 (814)
..+... . ...+.+.. ..+.-+|++||+.... +.+...+.. ...|..||+||....
T Consensus 177 ~~~~~~-----~----~~~f~~~~---~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 177 DSMKEG-----K----LNEFREKY---RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_pred HHHhcc-----c----HHHHHHHH---HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH
Confidence 655321 1 11222222 2345589999996431 123333221 123557888885320
Q ss_pred -------cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHH
Q 003515 309 -------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 363 (814)
Q Consensus 309 -------~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 363 (814)
...+..+.+++.+.++-.+++.+.+..... .-.+++...|++.+.|.--.+.
T Consensus 245 ~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~---~l~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 245 QDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHG---ELPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHhccccCHHHHH
Confidence 123447789999999999999887754322 1137788899999888754443
No 141
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.70 E-value=0.004 Score=69.58 Aligned_cols=152 Identities=17% Similarity=0.223 Sum_probs=93.0
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccC-CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhc
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF-KDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLK 266 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 266 (814)
...+.|+|.+|+|||+|++++++ .+...+ ...+.+++. .++...+...+... . ...+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~----~~~~~~~~- 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTS------EKFTNDFVNALRNN-----T----MEEFKEKY- 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHHcC-----c----HHHHHHHH-
Confidence 35689999999999999999998 555544 334556654 33444444444211 1 12222222
Q ss_pred ccCCCcEEEEEeCCCCCc------hHHHhhhcc-cCCCeEEEEEccccc-------------cCCCCccccCCCCHHHHH
Q 003515 267 PIRPEAILLVLDDVWSGS------ESLLQKFKF-QLPYYKILVTSRSVF-------------PQFGSGYDLKPLNDEAAR 326 (814)
Q Consensus 267 ~l~~kr~LlVlDdv~~~~------~~~~~~~~~-~~~gs~iivTtR~~~-------------~~~~~~~~l~~L~~~~~~ 326 (814)
+ +.-+|||||+.... +.+...+.. ...|..+|+||.... ...+..+++++.+.++-.
T Consensus 210 --~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~ 286 (450)
T PRK00149 210 --R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRI 286 (450)
T ss_pred --h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHH
Confidence 2 34489999995421 122222221 123456888886541 112347889999999999
Q ss_pred HHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHH
Q 003515 327 TLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 363 (814)
Q Consensus 327 ~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 363 (814)
+++.+.+...+. .-.+++...|++.+.|..-.+.
T Consensus 287 ~il~~~~~~~~~---~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 287 AILKKKAEEEGI---DLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHHHcCC---CCCHHHHHHHHcCcCCCHHHHH
Confidence 999988754321 1237789999999998876443
No 142
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.0042 Score=69.40 Aligned_cols=152 Identities=15% Similarity=0.152 Sum_probs=91.0
Q ss_pred CCCCCCccchhHHHHHHHh------hCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHH
Q 003515 166 PPVTPGLDVPLQELKLELF------KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQK 239 (814)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~ 239 (814)
+.+.+|.++-.++|++.|. .-+.+++++||++|+|||+|++.+++ .+...|- -++++...|..++-.-
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkfv----R~sLGGvrDEAEIRGH 395 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFV----RISLGGVRDEAEIRGH 395 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEE----EEecCccccHHHhccc
Confidence 3456999999999999997 22357999999999999999999997 5555552 4455555444332111
Q ss_pred HHHHhCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCch--------HHHhhhcccCC-------------Ce
Q 003515 240 VYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSE--------SLLQKFKFQLP-------------YY 298 (814)
Q Consensus 240 i~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~~--------~~~~~~~~~~~-------------gs 298 (814)
=-..+| .... ++-+-++..+.+.=+++||.++.-.. .+++-+.+..+ =|
T Consensus 396 RRTYIG------amPG----rIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 396 RRTYIG------AMPG----KIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred cccccc------cCCh----HHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchh
Confidence 000111 0111 22222333367788999999854321 13333332111 15
Q ss_pred EEEE-EccccccCC-------CCccccCCCCHHHHHHHHHHHc
Q 003515 299 KILV-TSRSVFPQF-------GSGYDLKPLNDEAARTLFRYSA 333 (814)
Q Consensus 299 ~iiv-TtR~~~~~~-------~~~~~l~~L~~~~~~~Lf~~~a 333 (814)
+|++ ||-+..... -.++++.+.+++|-.++-+++.
T Consensus 466 ~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred heEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 5554 444432211 1278999999999888877765
No 143
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.68 E-value=0.00019 Score=77.20 Aligned_cols=111 Identities=13% Similarity=0.095 Sum_probs=69.7
Q ss_pred CCCCCccchhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCC
Q 003515 167 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGY 246 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~ 246 (814)
..+++.+..++.+...|.. .+.|.++|++|+|||++|+.+++.......|.. +.||.+++..+..+++....-. +.
T Consensus 175 ~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~-v~~VtFHpsySYeDFI~G~rP~-~v 250 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQR-VNMVQFHQSYSYEDFIQGYRPN-GV 250 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCcccce-eeEEeecccccHHHHhcccCCC-CC
Confidence 4568888899999888874 346778999999999999999974322334554 7899999988877766433110 00
Q ss_pred CCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc
Q 003515 247 AVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGS 284 (814)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~ 284 (814)
. ..... .-..+.+.... .-.+++++||+|++....
T Consensus 251 g-y~~~~-G~f~~~~~~A~-~~p~~~~vliIDEINRan 285 (459)
T PRK11331 251 G-FRRKD-GIFYNFCQQAK-EQPEKKYVFIIDEINRAN 285 (459)
T ss_pred C-eEecC-chHHHHHHHHH-hcccCCcEEEEehhhccC
Confidence 0 00000 00111111111 113578999999997655
No 144
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.0016 Score=74.73 Aligned_cols=189 Identities=14% Similarity=0.168 Sum_probs=104.8
Q ss_pred CCCCCccchhHHHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhchhhhcc-CCCcEEEEEecCCCCHHHHHHHHHHHh
Q 003515 167 PVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLGK-FKDNIFFVTVSQTPNVKGIVQKVYQHK 244 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~~wv~v~~~~~~~~~~~~i~~~l 244 (814)
..++|.+..++.|..++.... .+.+.++|..|+||||+|+.+++. +... ... . ....+..-+..+.+....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~--L~c~~~~~-~----~~~~Cg~C~~C~~i~~g~ 88 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKS--LNCLNSDK-P----TPEPCGKCELCRAIAAGN 88 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHH--hcCCCcCC-C----CCCCCcccHHHHHHhcCC
Confidence 467899988899888888654 367889999999999999999873 2111 100 0 001111112222222211
Q ss_pred CCCCCCCC-ChHHHHHHHHHHh-----cccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEccccc------
Q 003515 245 GYAVPEFQ-TDEDAINDLERLL-----KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------ 308 (814)
Q Consensus 245 ~~~~~~~~-~~~~~~~~l~~~l-----~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------ 308 (814)
..+..... ......+.+++++ ....+++-++|+|++..-... ++..+......+.+|++|.+..
T Consensus 89 h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 89 ALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred CccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 11000000 0001122233332 112356679999999765543 4444443334455555554431
Q ss_pred cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHHH
Q 003515 309 PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVV 365 (814)
Q Consensus 309 ~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 365 (814)
..-...+++..++.++....+...+...+.. -..+.+..|++.++|.+..+..+
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~---is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESIE---IEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 1122367788899998888777665433221 12567889999999988655443
No 145
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.65 E-value=0.0003 Score=84.08 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=39.2
Q ss_pred CCCCCccchhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 167 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
+.++||+.++.++++.|......-+.++|.+|+|||++|+.+..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999876666777999999999999999987
No 146
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.63 E-value=1.1e-05 Score=83.21 Aligned_cols=159 Identities=18% Similarity=0.277 Sum_probs=105.2
Q ss_pred cccCCCCccEEecccCcCcCcCC-ccc-cCCCCccEEEeecCCCCCCCc-hhc-cCCCCcCEeecccCCCCC--CCcccc
Q 003515 646 FSDAFPNLLEIDIDYCNDLIELP-DGL-CDIVSIKKLRITNCHKLSALP-EGI-GKLVNLQMLTLASCTDLS--ALPDTI 719 (814)
Q Consensus 646 ~~~~l~~L~~L~L~~~~~~~~lp-~~i-~~l~~L~~L~l~~~~~~~~lp-~~~-~~l~~L~~L~L~~~~~~~--~lp~~l 719 (814)
+...+..|++|..++|...+..+ ..+ .+..+|+.|.+.+|...+..- ..+ .+.+.|+.+++.+|.... ++-..-
T Consensus 289 i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls 368 (483)
T KOG4341|consen 289 IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS 368 (483)
T ss_pred HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc
Confidence 34456677888877776543322 112 456778888888876433221 112 256778888887765432 233334
Q ss_pred CCCCCCCEEeccCCCCCCcc-----chhhcCCCCCCEEeccCCCCC--CcChhhhcCCCCCEE---EcCCchhhhhHhhh
Q 003515 720 GNLSNLNFLDISECLNIQEL-----PERIGELCSLKTLCLKGCSMF--ELPSSILNLENLEVV---KCDEETAYQWEYFQ 789 (814)
Q Consensus 720 ~~L~~L~~L~l~~~~~~~~l-----p~~l~~l~~L~~L~l~~~~l~--~lp~~l~~l~~L~~L---~l~~~~~~~~~~~~ 789 (814)
.+++.|+.|.+++|..++.. ...-..+..|+.+.+++|+.. .....+.++++|+.+ +|.+.......++.
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~ 448 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFA 448 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHH
Confidence 56789999999998766543 333356778999999999944 334556666677755 55666777789999
Q ss_pred hcCCCcEEEeecccc
Q 003515 790 LGQAKFRIEVIQEDI 804 (814)
Q Consensus 790 ~~l~~l~i~~~~~~~ 804 (814)
+++|+++++.+..+.
T Consensus 449 ~~lp~i~v~a~~a~~ 463 (483)
T KOG4341|consen 449 THLPNIKVHAYFAPV 463 (483)
T ss_pred hhCccceehhhccCC
Confidence 999999999987643
No 147
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.61 E-value=0.012 Score=66.40 Aligned_cols=151 Identities=16% Similarity=0.181 Sum_probs=92.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhhchhhhccC-CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcc
Q 003515 189 QVIVVSAPGGYGKTTLVKKLCKDDQVLGKF-KDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKP 267 (814)
Q Consensus 189 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 267 (814)
..+.|+|..|+|||.|++++++ .....+ ...+++++. .++..++...+... ....+.+.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yita------eef~~el~~al~~~---------~~~~f~~~y-- 375 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVSS------EEFTNEFINSIRDG---------KGDSFRRRY-- 375 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc---------cHHHHHHHh--
Confidence 4589999999999999999998 444332 334566654 44555555443211 012232222
Q ss_pred cCCCcEEEEEeCCCCCc------hHHHhhhcc-cCCCeEEEEEccccc-------------cCCCCccccCCCCHHHHHH
Q 003515 268 IRPEAILLVLDDVWSGS------ESLLQKFKF-QLPYYKILVTSRSVF-------------PQFGSGYDLKPLNDEAART 327 (814)
Q Consensus 268 l~~kr~LlVlDdv~~~~------~~~~~~~~~-~~~gs~iivTtR~~~-------------~~~~~~~~l~~L~~~~~~~ 327 (814)
+ +-=+|||||+.... +.+..-|.. ...|..|||||+... ...+.++++...+.+.-.+
T Consensus 376 -~-~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~a 453 (617)
T PRK14086 376 -R-EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIA 453 (617)
T ss_pred -h-cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHH
Confidence 2 23478999995432 123332222 123567888888641 1234478999999999999
Q ss_pred HHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHH
Q 003515 328 LFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 363 (814)
Q Consensus 328 Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 363 (814)
++.+++..... .-.+++.+-|++.+.+..-.+.
T Consensus 454 IL~kka~~r~l---~l~~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 454 ILRKKAVQEQL---NAPPEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHHHHHHhcCC---CCCHHHHHHHHHhccCCHHHHH
Confidence 99988754332 1237788888888887654443
No 148
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.60 E-value=9.6e-07 Score=96.50 Aligned_cols=106 Identities=27% Similarity=0.283 Sum_probs=49.1
Q ss_pred CCCccEEecccCcCcCcCCccccCCCCccEEEeecCCCCCCCchhccCCCCcCEeecccCCCCCCCccccCCCCCCCEEe
Q 003515 650 FPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLD 729 (814)
Q Consensus 650 l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~ 729 (814)
++.|++|+|++|++... +.+..|++|++|||++|. +..+|.--..-..|+.|++++|. +..+ ..+.+|.+|+.||
T Consensus 186 l~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN~-l~tL-~gie~LksL~~LD 260 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNNA-LTTL-RGIENLKSLYGLD 260 (1096)
T ss_pred HHHhhhhccchhhhhhh--HHHHhcccccccccccch-hccccccchhhhhheeeeecccH-HHhh-hhHHhhhhhhccc
Confidence 44556666666554332 145555566666666544 33344311111125566665543 2222 2345555666666
Q ss_pred ccCCCCCCcc-chhhcCCCCCCEEeccCCCCC
Q 003515 730 ISECLNIQEL-PERIGELCSLKTLCLKGCSMF 760 (814)
Q Consensus 730 l~~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~ 760 (814)
++.|-..+.- -..+..|..|..|+|.||++.
T Consensus 261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 6555322210 011344455555566666543
No 149
>PRK06620 hypothetical protein; Validated
Probab=97.59 E-value=0.0011 Score=65.53 Aligned_cols=130 Identities=16% Similarity=0.147 Sum_probs=78.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhccc
Q 003515 189 QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPI 268 (814)
Q Consensus 189 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~l 268 (814)
+.+.|+|++|+|||+|++.+++... ..++. ..+.. . ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--------~~~~~--~~~~~---------------------~-------~~~--- 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--------AYIIK--DIFFN---------------------E-------EIL--- 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--------CEEcc--hhhhc---------------------h-------hHH---
Confidence 5689999999999999999876321 11221 00000 0 001
Q ss_pred CCCcEEEEEeCCCCCchH-HHhhhcc-cCCCeEEEEEccccccC-----------CCCccccCCCCHHHHHHHHHHHccc
Q 003515 269 RPEAILLVLDDVWSGSES-LLQKFKF-QLPYYKILVTSRSVFPQ-----------FGSGYDLKPLNDEAARTLFRYSANL 335 (814)
Q Consensus 269 ~~kr~LlVlDdv~~~~~~-~~~~~~~-~~~gs~iivTtR~~~~~-----------~~~~~~l~~L~~~~~~~Lf~~~a~~ 335 (814)
.+.-++++||+....+. +..-+.. ...|..+|+|++..... .+.++++++++.++-..++.+.+..
T Consensus 84 -~~~d~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 84 -EKYNAFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred -hcCCEEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 12347889999643322 2222211 13567899999865221 2337899999999988888776643
Q ss_pred CCCCCCCCChHHHHHHHHHcCCchhHHH
Q 003515 336 QDGNSYIPDENLVNKILRACKGCPLALT 363 (814)
Q Consensus 336 ~~~~~~~~~~~~~~~i~~~~~g~Plai~ 363 (814)
.+. .-.+++..-|++.+.|.--.+.
T Consensus 163 ~~l---~l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 163 SSV---TISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred cCC---CCCHHHHHHHHHHccCCHHHHH
Confidence 221 1237788888888877654433
No 150
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.0023 Score=67.63 Aligned_cols=90 Identities=12% Similarity=0.087 Sum_probs=60.4
Q ss_pred CCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEccccccCC------CCccccCCCCHHHHHHHHHHHcccCCC
Q 003515 269 RPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVFPQF------GSGYDLKPLNDEAARTLFRYSANLQDG 338 (814)
Q Consensus 269 ~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~~~~------~~~~~l~~L~~~~~~~Lf~~~a~~~~~ 338 (814)
.+++-++|+|++..-... ++..+....+++.+|+||.+...-. ...+.+.+++.+++.+.+..... .
T Consensus 104 ~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~--~- 180 (328)
T PRK05707 104 LGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALP--E- 180 (328)
T ss_pred cCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcc--c-
Confidence 455566678999775543 5555555556788888887763221 23689999999999988876531 1
Q ss_pred CCCCCChHHHHHHHHHcCCchhHHHHH
Q 003515 339 NSYIPDENLVNKILRACKGCPLALTVV 365 (814)
Q Consensus 339 ~~~~~~~~~~~~i~~~~~g~Plai~~~ 365 (814)
..++.+..++..++|.|..+..+
T Consensus 181 ----~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 ----SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ----CChHHHHHHHHHcCCCHHHHHHH
Confidence 12445667889999999765544
No 151
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.58 E-value=0.00034 Score=84.09 Aligned_cols=148 Identities=14% Similarity=0.133 Sum_probs=84.9
Q ss_pred CCCCCccchhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhhcc------CCCcEEEEEecCCCCHHHHHHHH
Q 003515 167 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGK------FKDNIFFVTVSQTPNVKGIVQKV 240 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~~wv~v~~~~~~~~~~~~i 240 (814)
+.++||+.++.++++.|......-+.++|.+|+|||++|+.+++ ++... ....++.++++ . +
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~--~i~~~~~p~~l~~~~~~~l~~~------~----l 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQ--RIVNGDVPESLKNKRLLALDMG------A----L 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHH--HHhccCCchhhcCCeEEEeeHH------H----H
Confidence 45799999999999999866666677999999999999999887 43321 12223333321 1 1
Q ss_pred HHHhCCCCCCCCChHHHHHHHHHHhccc--CCCcEEEEEeCCCCCc--------hHHHhhhccc-CCC-eEEEE-Ecccc
Q 003515 241 YQHKGYAVPEFQTDEDAINDLERLLKPI--RPEAILLVLDDVWSGS--------ESLLQKFKFQ-LPY-YKILV-TSRSV 307 (814)
Q Consensus 241 ~~~l~~~~~~~~~~~~~~~~l~~~l~~l--~~kr~LlVlDdv~~~~--------~~~~~~~~~~-~~g-s~iiv-TtR~~ 307 (814)
+.. . ....+....+..+++.+ .+++.+|++|++.... .+....+.+. ..| -++|. ||..+
T Consensus 241 ~a~---~----~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e 313 (852)
T TIGR03346 241 IAG---A----KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDE 313 (852)
T ss_pred hhc---c----hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHH
Confidence 100 0 00112233444444332 2468999999985321 1111222221 122 34444 44443
Q ss_pred cc---CCC-------CccccCCCCHHHHHHHHHHHc
Q 003515 308 FP---QFG-------SGYDLKPLNDEAARTLFRYSA 333 (814)
Q Consensus 308 ~~---~~~-------~~~~l~~L~~~~~~~Lf~~~a 333 (814)
.. ... ..+.++..+.++...++....
T Consensus 314 ~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 314 YRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 21 111 157788889999999887654
No 152
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.56 E-value=0.0022 Score=68.48 Aligned_cols=147 Identities=15% Similarity=0.186 Sum_probs=88.3
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcc
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKP 267 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 267 (814)
...+.|||..|.|||.|++++.+ ......+. .-.+.+ +.+.+...++..+... ..+.+++.
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~-a~v~y~----~se~f~~~~v~a~~~~---------~~~~Fk~~--- 173 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGN--EALANGPN-ARVVYL----TSEDFTNDFVKALRDN---------EMEKFKEK--- 173 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH--HHHhhCCC-ceEEec----cHHHHHHHHHHHHHhh---------hHHHHHHh---
Confidence 67899999999999999999998 56555553 223333 2345555555554321 12222222
Q ss_pred cCCCcEEEEEeCCCCCc------hHHHhhhccc-CCCeEEEEEccccc-------------cCCCCccccCCCCHHHHHH
Q 003515 268 IRPEAILLVLDDVWSGS------ESLLQKFKFQ-LPYYKILVTSRSVF-------------PQFGSGYDLKPLNDEAART 327 (814)
Q Consensus 268 l~~kr~LlVlDdv~~~~------~~~~~~~~~~-~~gs~iivTtR~~~-------------~~~~~~~~l~~L~~~~~~~ 327 (814)
. .-=++++||++... +.+..-|..- ..|-.||+|++... ...|.++++.+.+.+...+
T Consensus 174 y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~a 251 (408)
T COG0593 174 Y--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLA 251 (408)
T ss_pred h--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHH
Confidence 1 23388999985421 2233333321 23448999987542 1234479999999999999
Q ss_pred HHHHHcccCCCCCCCCChHHHHHHHHHcCCc
Q 003515 328 LFRYSANLQDGNSYIPDENLVNKILRACKGC 358 (814)
Q Consensus 328 Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 358 (814)
++.+.+...+... .+++..-|++.....
T Consensus 252 iL~kka~~~~~~i---~~ev~~~la~~~~~n 279 (408)
T COG0593 252 ILRKKAEDRGIEI---PDEVLEFLAKRLDRN 279 (408)
T ss_pred HHHHHHHhcCCCC---CHHHHHHHHHHhhcc
Confidence 9988764443321 255566666655443
No 153
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.56 E-value=1.2e-05 Score=88.80 Aligned_cols=149 Identities=20% Similarity=0.248 Sum_probs=63.7
Q ss_pred cCCCCCCcEEEeecccccCcccccccccCCCCCCCEEEecCCCCCCcc-ccccccccccceecccccccccCcccccccC
Q 003515 571 LEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSLT-TVRMKHLQNVSLVMCNVDQVVQNSTFHFSDA 649 (814)
Q Consensus 571 l~~l~~Lr~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 649 (814)
+..+.+|++|++++|. +..+..+..++.|+.|++++|.+..+. ...+..|+.+++.+|.+...-+. . ...
T Consensus 114 l~~~~~L~~L~ls~N~-----I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~---~-~~~ 184 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNK-----ITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIEND---E-LSE 184 (414)
T ss_pred hhhhhcchheeccccc-----cccccchhhccchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhh---h-hhh
Confidence 4455555555555542 222222444555555555555555542 22255555555555544433221 0 014
Q ss_pred CCCccEEecccCcCcCcCCccccCCCCccEEEeecCCCCCCCchhccCCC--CcCEeecccCCCCCCCccccCCCCCCCE
Q 003515 650 FPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLV--NLQMLTLASCTDLSALPDTIGNLSNLNF 727 (814)
Q Consensus 650 l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~--~L~~L~L~~~~~~~~lp~~l~~L~~L~~ 727 (814)
+.+|+.+.+.+|.+.. ..++..+..+..+++..|.+...-+ +..+. +|+.+++.+|+. ...+..+..+..+..
T Consensus 185 ~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i-~~~~~~~~~~~~l~~ 259 (414)
T KOG0531|consen 185 LISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRI-SRSPEGLENLKNLPV 259 (414)
T ss_pred ccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcc-ccccccccccccccc
Confidence 4555555555554221 1222333333333444433211111 11122 255555555432 223234444555555
Q ss_pred EeccCC
Q 003515 728 LDISEC 733 (814)
Q Consensus 728 L~l~~~ 733 (814)
|++.++
T Consensus 260 l~~~~n 265 (414)
T KOG0531|consen 260 LDLSSN 265 (414)
T ss_pred cchhhc
Confidence 555544
No 154
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.56 E-value=0.00045 Score=82.79 Aligned_cols=171 Identities=12% Similarity=0.147 Sum_probs=92.5
Q ss_pred CCCCCccchhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhhc-----cCCCcEEEEEecCCCCHHHHHHHHH
Q 003515 167 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLG-----KFKDNIFFVTVSQTPNVKGIVQKVY 241 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----~F~~~~~wv~v~~~~~~~~~~~~i~ 241 (814)
+.++||+++++++++.|......-+.++|.+|+|||++|+.++. ++.. ......+|. + +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~--~i~~~~vp~~l~~~~i~~-l----~~~~l~---- 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQ--RIVNRDVPDILEDKLVIT-L----DIGLLL---- 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHH--HHHhCCCChhhcCCeEEE-e----eHHHHh----
Confidence 34799999999999999865555667999999999999999987 3321 111223332 1 111111
Q ss_pred HHhCCCCCCCCChHHHHHHHHHHhccc-CCCcEEEEEeCCCCCc-----------hHHHhhhcccCCCeEEE-EEccccc
Q 003515 242 QHKGYAVPEFQTDEDAINDLERLLKPI-RPEAILLVLDDVWSGS-----------ESLLQKFKFQLPYYKIL-VTSRSVF 308 (814)
Q Consensus 242 ~~l~~~~~~~~~~~~~~~~l~~~l~~l-~~kr~LlVlDdv~~~~-----------~~~~~~~~~~~~gs~ii-vTtR~~~ 308 (814)
.+.. ...+..+.+..+++.+ ..++.+|++|++.... ..++.+....+ .-++| .||..+.
T Consensus 248 ---ag~~----~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ey 319 (821)
T CHL00095 248 ---AGTK----YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDEY 319 (821)
T ss_pred ---ccCC----CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHHH
Confidence 1110 1122334555555332 3568999999984210 11222222111 23444 4454431
Q ss_pred -------cC---CCCccccCCCCHHHHHHHHHHHcc--cCCCCCCCCChHHHHHHHHHcCC
Q 003515 309 -------PQ---FGSGYDLKPLNDEAARTLFRYSAN--LQDGNSYIPDENLVNKILRACKG 357 (814)
Q Consensus 309 -------~~---~~~~~~l~~L~~~~~~~Lf~~~a~--~~~~~~~~~~~~~~~~i~~~~~g 357 (814)
.. .-..+.+...+.++...++....- ....... -.++....+++.++|
T Consensus 320 ~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~-i~deal~~i~~ls~~ 379 (821)
T CHL00095 320 RKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLS-ISDKALEAAAKLSDQ 379 (821)
T ss_pred HHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhhc
Confidence 11 111577888898888888764321 1111011 124556666666654
No 155
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.0033 Score=65.79 Aligned_cols=169 Identities=14% Similarity=0.113 Sum_probs=97.5
Q ss_pred chhHHHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhchhhh----------------ccCCCcEEEEEecC-CCCHHH
Q 003515 174 VPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVL----------------GKFKDNIFFVTVSQ-TPNVKG 235 (814)
Q Consensus 174 ~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~----------------~~F~~~~~wv~v~~-~~~~~~ 235 (814)
...+++...+..+. ...+.++|+.|+||+++|..+++.--.. +..++ +.|+.... ....
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~~~~-- 87 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNRTGD-- 87 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCcccc--
Confidence 34566666666555 4568999999999999998887621101 11122 22332100 0000
Q ss_pred HHHHHHHHhCCCCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEcccccc
Q 003515 236 IVQKVYQHKGYAVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVFP 309 (814)
Q Consensus 236 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~~ 309 (814)
. ....-..+.+.++.+.+ ....+++-++|+|++..-... ++..+....+++.+|++|.+...
T Consensus 88 -----------k-~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~ 155 (319)
T PRK08769 88 -----------K-LRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPAR 155 (319)
T ss_pred -----------c-ccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhh
Confidence 0 00000112222233322 223467789999999765533 55556656667888888776532
Q ss_pred CC------CCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHHHH
Q 003515 310 QF------GSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVG 366 (814)
Q Consensus 310 ~~------~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 366 (814)
-. ...+.+.+++.+++.+.+.... . .+..+..++..++|.|+.+..+.
T Consensus 156 lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~-----~~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 156 LPATIRSRCQRLEFKLPPAHEALAWLLAQG----V-----SERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CchHHHhhheEeeCCCcCHHHHHHHHHHcC----C-----ChHHHHHHHHHcCCCHHHHHHHh
Confidence 22 2268889999999888886431 1 13446788999999998665443
No 156
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.52 E-value=0.00012 Score=51.55 Aligned_cols=38 Identities=34% Similarity=0.532 Sum_probs=19.6
Q ss_pred CCCEEeccCCCCCCccchhhcCCCCCCEEeccCCCCCCc
Q 003515 724 NLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFEL 762 (814)
Q Consensus 724 ~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~l 762 (814)
+|++|++++| .+..+|..+++|++|+.|++++|+++.+
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 4555555555 2344555555555555555555555544
No 157
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=3.7e-06 Score=82.61 Aligned_cols=173 Identities=17% Similarity=0.211 Sum_probs=87.9
Q ss_pred CceEEEEEeccCCCCCCChhcCCCCCCcEEEeecc-cccCcccccccccCCCCCCCEEEecCCCCCCccccccccccccc
Q 003515 551 PEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNY-GFFPAELSNIQVFGALSNLKRIRLEHVSLPSLTTVRMKHLQNVS 629 (814)
Q Consensus 551 ~~~~~l~l~~~~~~~~~p~~l~~l~~Lr~L~l~~~-~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~ 629 (814)
.+++-+++........+-..+++-.+|+.|+++.+ |+....+.. .+++++.|..|+|++|.+......
T Consensus 210 ~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~l--l~~scs~L~~LNlsWc~l~~~~Vt--------- 278 (419)
T KOG2120|consen 210 SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQL--LLSSCSRLDELNLSWCFLFTEKVT--------- 278 (419)
T ss_pred HhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHH--HHHhhhhHhhcCchHhhccchhhh---------
Confidence 34444444444444555566677777777777764 222211111 145556666666666544322000
Q ss_pred eecccccccccCcccccccCCCCccEEecccCcCc---CcCCccccCCCCccEEEeecCCCCC-CCchhccCCCCcCEee
Q 003515 630 LVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDL---IELPDGLCDIVSIKKLRITNCHKLS-ALPEGIGKLVNLQMLT 705 (814)
Q Consensus 630 l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~---~~lp~~i~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~ 705 (814)
. .+..--++|+.|+|++|... ..+..-...+++|.+|||++|..+. .....+.+++.|++|.
T Consensus 279 ------------v--~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 279 ------------V--AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred ------------H--HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 0 00001234555555554311 0111112456777777777765433 2334566778888888
Q ss_pred cccCCCCCCCcc---ccCCCCCCCEEeccCCCCCCccchhhcCCCCCC
Q 003515 706 LASCTDLSALPD---TIGNLSNLNFLDISECLNIQELPERIGELCSLK 750 (814)
Q Consensus 706 L~~~~~~~~lp~---~l~~L~~L~~L~l~~~~~~~~lp~~l~~l~~L~ 750 (814)
++.|.. .+|. .+...++|.+|++.+|-.-+.+--....+++|+
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLK 390 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccc
Confidence 888763 3443 345567888888888754443332333445444
No 158
>CHL00181 cbbX CbbX; Provisional
Probab=97.50 E-value=0.0023 Score=66.41 Aligned_cols=126 Identities=18% Similarity=0.158 Sum_probs=66.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcccC
Q 003515 190 VIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIR 269 (814)
Q Consensus 190 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~l~ 269 (814)
.+.++|.+|+||||+|+.+++.....+.-..+ -|+.++ ..++. ..+.+. .. ......++...
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~-~~~~v~----~~~l~----~~~~g~-----~~----~~~~~~l~~a~ 122 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKG-HLLTVT----RDDLV----GQYIGH-----TA----PKTKEVLKKAM 122 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCC-ceEEec----HHHHH----HHHhcc-----ch----HHHHHHHHHcc
Confidence 47889999999999999998731111111111 255554 12222 222111 01 11223332222
Q ss_pred CCcEEEEEeCCCCC---------chH----HHhhhcccCCCeEEEEEccccc------------cCCCCccccCCCCHHH
Q 003515 270 PEAILLVLDDVWSG---------SES----LLQKFKFQLPYYKILVTSRSVF------------PQFGSGYDLKPLNDEA 324 (814)
Q Consensus 270 ~kr~LlVlDdv~~~---------~~~----~~~~~~~~~~gs~iivTtR~~~------------~~~~~~~~l~~L~~~~ 324 (814)
+ -+|++|++... ... +...+.....+..||+++.... ......+.+++++.++
T Consensus 123 g--gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~e 200 (287)
T CHL00181 123 G--GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEE 200 (287)
T ss_pred C--CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHH
Confidence 2 49999999642 111 2222333334567777764321 1123368888999999
Q ss_pred HHHHHHHHccc
Q 003515 325 ARTLFRYSANL 335 (814)
Q Consensus 325 ~~~Lf~~~a~~ 335 (814)
..+++...+..
T Consensus 201 l~~I~~~~l~~ 211 (287)
T CHL00181 201 LLQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHHH
Confidence 88888776643
No 159
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.50 E-value=0.0011 Score=68.08 Aligned_cols=43 Identities=26% Similarity=0.226 Sum_probs=31.1
Q ss_pred CCCCccchhHHHHHH---Hh------h------CCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 168 VTPGLDVPLQELKLE---LF------K------DGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 168 ~~vGr~~~~~~l~~~---L~------~------~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
.++|.+..+++|.+. .. . ....-+.++|++|+||||+|+.+++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 368887776666433 31 1 1245678999999999999999986
No 160
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.47 E-value=0.00011 Score=51.81 Aligned_cols=42 Identities=24% Similarity=0.323 Sum_probs=35.4
Q ss_pred CCCCEEeccCCCCCCcChhhhcCCCCCEEEcCCchhhhhHhh
Q 003515 747 CSLKTLCLKGCSMFELPSSILNLENLEVVKCDEETAYQWEYF 788 (814)
Q Consensus 747 ~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~ 788 (814)
++|++|++++|.++.+|+.+.+|++|+.|++++|....++.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISPL 42 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcCC
Confidence 579999999999999999899999999999999977765543
No 161
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.44 E-value=0.007 Score=59.34 Aligned_cols=176 Identities=15% Similarity=0.217 Sum_probs=105.7
Q ss_pred hCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEe-cCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHH
Q 003515 185 KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTV-SQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLER 263 (814)
Q Consensus 185 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 263 (814)
.++.+++.++|.-|.|||+++++... ... +..+.-+.+ ....+...+...++..+..+. .........+..+
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~--s~~---~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p--~~~~~~~~e~~~~ 120 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLA--SLN---EDQVAVVVIDKPTLSDATLLEAIVADLESQP--KVNVNAVLEQIDR 120 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHH--hcC---CCceEEEEecCcchhHHHHHHHHHHHhccCc--cchhHHHHHHHHH
Confidence 55677999999999999999995543 111 222322333 344567788888888887622 1222222233333
Q ss_pred Hh--cccCCCc-EEEEEeCCCCCchHHHhhhc---ccC-CC---eEEEEEccccc---------cCCCC---c-cccCCC
Q 003515 264 LL--KPIRPEA-ILLVLDDVWSGSESLLQKFK---FQL-PY---YKILVTSRSVF---------PQFGS---G-YDLKPL 320 (814)
Q Consensus 264 ~l--~~l~~kr-~LlVlDdv~~~~~~~~~~~~---~~~-~g---s~iivTtR~~~---------~~~~~---~-~~l~~L 320 (814)
.+ ..-+++| ..+++||......+.+..+. ... .+ -+|+..-.-+. ...+. . |++.|+
T Consensus 121 ~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~ 200 (269)
T COG3267 121 ELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPL 200 (269)
T ss_pred HHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCc
Confidence 33 1126777 99999998665544232222 111 11 12332222110 11111 3 899999
Q ss_pred CHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHHHHH
Q 003515 321 NDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGG 367 (814)
Q Consensus 321 ~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 367 (814)
+.++....++.+..+...+.+...++....|.....|.|.+|..++.
T Consensus 201 ~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 201 TEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred ChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99998888887765554433333477888999999999999987765
No 162
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.42 E-value=0.0032 Score=61.91 Aligned_cols=47 Identities=19% Similarity=0.110 Sum_probs=37.5
Q ss_pred CCCCCCCCccchhHHHHHHHh----hCCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 164 DPPPVTPGLDVPLQELKLELF----KDGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 164 ~~~~~~vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
..-+.++|.+.+++.|++-.. .....-+.+||..|.|||++++++.+
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~ 74 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLN 74 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHH
Confidence 345678999999988875443 34456688899999999999999987
No 163
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.42 E-value=0.0025 Score=70.64 Aligned_cols=151 Identities=14% Similarity=0.192 Sum_probs=83.9
Q ss_pred CCCCCccchhHHHHHHHhh-------------CCcEEEEEEcCCCCCHHHHHHHHhhchhhhccC----CCcEEEEEecC
Q 003515 167 PVTPGLDVPLQELKLELFK-------------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF----KDNIFFVTVSQ 229 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~~wv~v~~ 229 (814)
..+.|.+..+++|.+.+.. ...+-+.++|++|+|||++|+++++ .+...+ .....++.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~--eL~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVAN--SLAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHH--hhccccccccCCceeEEeccc
Confidence 4567899999988877641 1245689999999999999999998 443321 11234555443
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHh-c-ccCCCcEEEEEeCCCCCc---------h---HHHhhhcc--
Q 003515 230 TPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL-K-PIRPEAILLVLDDVWSGS---------E---SLLQKFKF-- 293 (814)
Q Consensus 230 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~-~l~~kr~LlVlDdv~~~~---------~---~~~~~~~~-- 293 (814)
. ++ +....+ ........+.... + ...+++++|+||+++... + .++..+..
T Consensus 260 ~----eL----l~kyvG------ete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 260 P----EL----LNKYVG------ETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred h----hh----cccccc------hHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 1 11 111000 0111111111111 1 114578999999985321 0 11222211
Q ss_pred -c---CCCeEEEEEccccc------c---CCCCccccCCCCHHHHHHHHHHHc
Q 003515 294 -Q---LPYYKILVTSRSVF------P---QFGSGYDLKPLNDEAARTLFRYSA 333 (814)
Q Consensus 294 -~---~~gs~iivTtR~~~------~---~~~~~~~l~~L~~~~~~~Lf~~~a 333 (814)
+ ..+..||.||.... . .....++++..+.++..++|..+.
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 1 13445666664431 1 122358999999999999998875
No 164
>PRK08116 hypothetical protein; Validated
Probab=97.40 E-value=0.00062 Score=69.88 Aligned_cols=99 Identities=20% Similarity=0.235 Sum_probs=56.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhccc
Q 003515 189 QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPI 268 (814)
Q Consensus 189 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~l 268 (814)
..+.++|..|+|||.||.++++ .+... ...+++++ ..+++..+........ . .....+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~--~l~~~-~~~v~~~~------~~~ll~~i~~~~~~~~-----~-~~~~~~~~~l--- 176 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIAN--ELIEK-GVPVIFVN------FPQLLNRIKSTYKSSG-----K-EDENEIIRSL--- 176 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHc-CCeEEEEE------HHHHHHHHHHHHhccc-----c-ccHHHHHHHh---
Confidence 4588999999999999999998 44433 23355665 3455666655543221 0 1111122222
Q ss_pred CCCcEEEEEeCCCC--CchHHHhh----hcc-cCCCeEEEEEccc
Q 003515 269 RPEAILLVLDDVWS--GSESLLQK----FKF-QLPYYKILVTSRS 306 (814)
Q Consensus 269 ~~kr~LlVlDdv~~--~~~~~~~~----~~~-~~~gs~iivTtR~ 306 (814)
.+-. ||||||+.. ..++.... +.. ...+..+||||..
T Consensus 177 ~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 177 VNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred cCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3333 899999943 23332111 111 1245679999964
No 165
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.39 E-value=0.0023 Score=66.39 Aligned_cols=125 Identities=16% Similarity=0.179 Sum_probs=67.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcccC
Q 003515 190 VIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIR 269 (814)
Q Consensus 190 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~l~ 269 (814)
-+.++|.+|+|||++|+.+++.-.-.+....+ -++.++. .++ ...+.+. .. ..+...++..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~-~~v~v~~----~~l----~~~~~g~-----~~----~~~~~~~~~a- 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKG-HLVSVTR----DDL----VGQYIGH-----TA----PKTKEILKRA- 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccc-eEEEecH----HHH----hHhhccc-----ch----HHHHHHHHHc-
Confidence 57899999999999998877621111111111 2454442 122 2222111 11 1233334322
Q ss_pred CCcEEEEEeCCCCC---------ch----HHHhhhcccCCCeEEEEEcccc----cc--------CCCCccccCCCCHHH
Q 003515 270 PEAILLVLDDVWSG---------SE----SLLQKFKFQLPYYKILVTSRSV----FP--------QFGSGYDLKPLNDEA 324 (814)
Q Consensus 270 ~kr~LlVlDdv~~~---------~~----~~~~~~~~~~~gs~iivTtR~~----~~--------~~~~~~~l~~L~~~~ 324 (814)
..-+|+||++... .. .+...+.....+.+||+++... .. .....+++++++.+|
T Consensus 121 -~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ed 199 (284)
T TIGR02880 121 -MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAE 199 (284)
T ss_pred -cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence 2368999998632 11 1233333333456777776432 11 113468899999999
Q ss_pred HHHHHHHHcc
Q 003515 325 ARTLFRYSAN 334 (814)
Q Consensus 325 ~~~Lf~~~a~ 334 (814)
-.+++.+.+-
T Consensus 200 l~~I~~~~l~ 209 (284)
T TIGR02880 200 LLVIAGLMLK 209 (284)
T ss_pred HHHHHHHHHH
Confidence 9999887653
No 166
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.38 E-value=0.00033 Score=63.71 Aligned_cols=21 Identities=43% Similarity=0.683 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhhc
Q 003515 191 IVVSAPGGYGKTTLVKKLCKD 211 (814)
Q Consensus 191 i~I~G~gGiGKTtLa~~v~~~ 211 (814)
|.|+|++|+||||+|+.++++
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999983
No 167
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.38 E-value=0.0025 Score=63.12 Aligned_cols=170 Identities=22% Similarity=0.280 Sum_probs=101.0
Q ss_pred CCCCCCCCCccchhHHHHHHHh-----hCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHH
Q 003515 163 PDPPPVTPGLDVPLQELKLELF-----KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIV 237 (814)
Q Consensus 163 ~~~~~~~vGr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~ 237 (814)
|..=.+|||.++-++++.-++. .+..--+.++|++|.||||||.-+++ ++...+.. .+.+-+
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~k~-------tsGp~l---- 88 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNLKI-------TSGPAL---- 88 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCeEe-------cccccc----
Confidence 3334578999888888866665 23356789999999999999999998 55444322 111110
Q ss_pred HHHHHHhCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc---hHHH----hhhc-----ccCCCeE------
Q 003515 238 QKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGS---ESLL----QKFK-----FQLPYYK------ 299 (814)
Q Consensus 238 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~---~~~~----~~~~-----~~~~gs~------ 299 (814)
... ..+..++..++... .+++|.+.... ++++ +.|. ..++++|
T Consensus 89 --------------eK~----gDlaaiLt~Le~~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldL 149 (332)
T COG2255 89 --------------EKP----GDLAAILTNLEEGD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDL 149 (332)
T ss_pred --------------cCh----hhHHHHHhcCCcCC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccC
Confidence 011 11223332233333 44567664433 1111 1111 1123332
Q ss_pred -----EEEEccccc------cCCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHHHHH
Q 003515 300 -----ILVTSRSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGG 367 (814)
Q Consensus 300 -----iivTtR~~~------~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 367 (814)
|=.|||... ...|.+.+++..+.+|-.+...+.+..-+. .-.++.+.+|++...|-|--+.-+-+
T Consensus 150 ppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i---~i~~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 150 PPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI---EIDEEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred CCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC---CCChHHHHHHHHhccCCcHHHHHHHH
Confidence 446888753 224557889999999999999887743332 12367899999999999965444433
No 168
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.38 E-value=0.0036 Score=66.54 Aligned_cols=141 Identities=14% Similarity=0.140 Sum_probs=81.8
Q ss_pred CCC-ccchhHHHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhchhhhc-------------------cCCCcEEEEEe
Q 003515 169 TPG-LDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLG-------------------KFKDNIFFVTV 227 (814)
Q Consensus 169 ~vG-r~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~~wv~v 227 (814)
++| -+..++.+...+..+. .+...++|+.|+||||+|+.+.+.---.. .++. +.++..
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD-~~~i~~ 85 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPD-VHLVAP 85 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCC-EEEecc
Confidence 456 4555667777776555 56679999999999999998876210011 0111 111111
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEE
Q 003515 228 SQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKIL 301 (814)
Q Consensus 228 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~ii 301 (814)
... ....+.+..+.+.+ ....+++-++|+|++..-... ++..+....+++.+|
T Consensus 86 ~~~---------------------~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~I 144 (329)
T PRK08058 86 DGQ---------------------SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAI 144 (329)
T ss_pred ccc---------------------cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEE
Confidence 000 01111222222222 223456678999998665543 555555555677788
Q ss_pred EEccccc------cCCCCccccCCCCHHHHHHHHHH
Q 003515 302 VTSRSVF------PQFGSGYDLKPLNDEAARTLFRY 331 (814)
Q Consensus 302 vTtR~~~------~~~~~~~~l~~L~~~~~~~Lf~~ 331 (814)
++|.+.. ..-...+++.+++.++..+.+..
T Consensus 145 l~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 145 LLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred EEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 7776652 12233789999999998888864
No 169
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.37 E-value=0.00056 Score=79.92 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=37.7
Q ss_pred CCCCccchhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 168 VTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
.++||+.++.++++.|......-+.++|.+|+|||++|+.+++
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999865555567899999999999999987
No 170
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.32 E-value=0.014 Score=57.57 Aligned_cols=219 Identities=13% Similarity=0.099 Sum_probs=124.0
Q ss_pred CCCccchhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhc------hhhhccCCCcEEEEE----------ecCC--
Q 003515 169 TPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKD------DQVLGKFKDNIFFVT----------VSQT-- 230 (814)
Q Consensus 169 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~------~~~~~~F~~~~~wv~----------v~~~-- 230 (814)
+.++++...++.......+.+-+.++|++|.||-|.+..+.+. ++++ -+. .-|.+ ++..
T Consensus 15 l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklk--i~~-~t~~tpS~kklEistvsS~yH 91 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLK--IET-RTFTTPSKKKLEISTVSSNYH 91 (351)
T ss_pred cccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchhee--eee-EEEecCCCceEEEEEecccce
Confidence 5677777777766666667889999999999999977666552 1111 111 11222 1211
Q ss_pred ---------CCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcccCCCcE-EEEEeCCCCCchH----HHhhhcccCC
Q 003515 231 ---------PNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAI-LLVLDDVWSGSES----LLQKFKFQLP 296 (814)
Q Consensus 231 ---------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~kr~-LlVlDdv~~~~~~----~~~~~~~~~~ 296 (814)
...+-+.++|++.++...+- .. -..+.| ++|+-.+++...+ +.+....-..
T Consensus 92 lEitPSDaG~~DRvViQellKevAQt~qi-----------e~----~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 92 LEITPSDAGNYDRVVIQELLKEVAQTQQI-----------ET----QGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred EEeChhhcCcccHHHHHHHHHHHHhhcch-----------hh----ccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 11334556666655433211 00 022334 5566655443322 2222223345
Q ss_pred CeEEEEEccccccC------CCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHHHHHHhC
Q 003515 297 YYKILVTSRSVFPQ------FGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGGSLC 370 (814)
Q Consensus 297 gs~iivTtR~~~~~------~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~L~ 370 (814)
.+|+|+...+-..- -.-.+.+...+++|-...+.+.+-..+-. -..+++.+|+++++|.-.-+..+-...+
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~---lp~~~l~rIa~kS~~nLRrAllmlE~~~ 233 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQ---LPKELLKRIAEKSNRNLRRALLMLEAVR 233 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhccc---CcHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 67777765443211 11267889999999999998877554432 1278999999999987533333222221
Q ss_pred --C-----C----ChHHHHHHHHHHhccccccCChHHHHHHHHHHHhhc
Q 003515 371 --G-----K----HPAIWQKRVKEWTQDVSVFHSNKEILSCLERSLDAL 408 (814)
Q Consensus 371 --~-----~----~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~~sy~~L 408 (814)
+ + +.-+|+..+++.....-..+....+..+-..-|+-|
T Consensus 234 ~~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 234 VNNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred hccccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 1 1 356898888876543333345566666666667666
No 171
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.31 E-value=0.012 Score=61.72 Aligned_cols=169 Identities=13% Similarity=0.143 Sum_probs=96.1
Q ss_pred hhHHHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC---
Q 003515 175 PLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPE--- 250 (814)
Q Consensus 175 ~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~--- 250 (814)
..+.+...+..+. ...+.++|+.|+||+++|+.++.----...... ..+..-...+.+.. +..|+
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~--------~~Cg~C~sC~~~~~---g~HPD~~~ 78 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD--------QPCGQCHSCHLFQA---GNHPDFHI 78 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC--------CCCCCCHHHHHHhc---CCCCCEEE
Confidence 3456666666555 567889999999999999998762110010000 00000000011100 00000
Q ss_pred ------CCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEccccccCC------C
Q 003515 251 ------FQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVFPQF------G 312 (814)
Q Consensus 251 ------~~~~~~~~~~l~~~l--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~~~~------~ 312 (814)
..-..+.+.++.+.+ ....+++-++|+|++..-... ++..+....+++.+|++|.+...-. .
T Consensus 79 i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC 158 (325)
T PRK06871 79 LEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRC 158 (325)
T ss_pred EccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhc
Confidence 001122233333333 233577788999999765533 5666666666788888887653221 2
Q ss_pred CccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHH
Q 003515 313 SGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLAL 362 (814)
Q Consensus 313 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai 362 (814)
..+.+.++++++..+.+..... .....+...+..++|.|+.+
T Consensus 159 ~~~~~~~~~~~~~~~~L~~~~~--------~~~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 159 QTWLIHPPEEQQALDWLQAQSS--------AEISEILTALRINYGRPLLA 200 (325)
T ss_pred eEEeCCCCCHHHHHHHHHHHhc--------cChHHHHHHHHHcCCCHHHH
Confidence 3789999999999888876531 11223567788999999644
No 172
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.30 E-value=0.0056 Score=58.64 Aligned_cols=101 Identities=16% Similarity=0.223 Sum_probs=63.1
Q ss_pred CCCCCCccchhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhC
Q 003515 166 PPVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKG 245 (814)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~ 245 (814)
-.++||-++.++.+.-+-.+.+.+-+.|.||+|+||||-+..+++. -....+..++.=.+.|+...+.-+-..|-.- .
T Consensus 26 l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~-LLG~~~ke~vLELNASdeRGIDvVRn~IK~F-A 103 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARE-LLGDSYKEAVLELNASDERGIDVVRNKIKMF-A 103 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHH-HhChhhhhHhhhccCccccccHHHHHHHHHH-H
Confidence 3567999999988876666778899999999999999988877761 2233444445555555544443322222111 0
Q ss_pred CCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc
Q 003515 246 YAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGS 284 (814)
Q Consensus 246 ~~~~~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~ 284 (814)
++...--.++.-.||||..++-.
T Consensus 104 ----------------Q~kv~lp~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 104 ----------------QKKVTLPPGRHKIIILDEADSMT 126 (333)
T ss_pred ----------------HhhccCCCCceeEEEeeccchhh
Confidence 00001114667789999986644
No 173
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.29 E-value=1.7e-05 Score=69.09 Aligned_cols=111 Identities=19% Similarity=0.307 Sum_probs=78.4
Q ss_pred CccEEecccCcCcCcCCcc---ccCCCCccEEEeecCCCCCCCchhcc-CCCCcCEeecccCCCCCCCccccCCCCCCCE
Q 003515 652 NLLEIDIDYCNDLIELPDG---LCDIVSIKKLRITNCHKLSALPEGIG-KLVNLQMLTLASCTDLSALPDTIGNLSNLNF 727 (814)
Q Consensus 652 ~L~~L~L~~~~~~~~lp~~---i~~l~~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~ 727 (814)
.+..++|+.|++ ..+++. +....+|+..+|++|. ...+|+.+. +++.+++|++.+|. +..+|..+..++.|+.
T Consensus 28 E~h~ldLssc~l-m~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQL-MYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchh-hHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhh
Confidence 466778888863 334443 3445667777888865 455666555 45578888888754 6788888888888888
Q ss_pred EeccCCCCCCccchhhcCCCCCCEEeccCCCCCCcChhh
Q 003515 728 LDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSI 766 (814)
Q Consensus 728 L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l 766 (814)
|+++.|+ +...|.-+..|.+|-.|+..+|.+..+|-.+
T Consensus 105 lNl~~N~-l~~~p~vi~~L~~l~~Lds~~na~~eid~dl 142 (177)
T KOG4579|consen 105 LNLRFNP-LNAEPRVIAPLIKLDMLDSPENARAEIDVDL 142 (177)
T ss_pred cccccCc-cccchHHHHHHHhHHHhcCCCCccccCcHHH
Confidence 8888874 5566777777888888888888777776543
No 174
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.28 E-value=0.0017 Score=73.94 Aligned_cols=48 Identities=23% Similarity=0.414 Sum_probs=39.8
Q ss_pred CCCCCCCCCccchhHHHHHHHhhC-----CcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 163 PDPPPVTPGLDVPLQELKLELFKD-----GRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 163 ~~~~~~~vGr~~~~~~l~~~L~~~-----~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
|..-++++|-+..++++..++... ..+++.|+|++|+||||+++.++.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 444567899999999999988732 246799999999999999999987
No 175
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.27 E-value=0.02 Score=59.94 Aligned_cols=160 Identities=16% Similarity=0.167 Sum_probs=95.1
Q ss_pred hhHHHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhchhhh------------------ccCCCcEEEEEecCCCCHHH
Q 003515 175 PLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVL------------------GKFKDNIFFVTVSQTPNVKG 235 (814)
Q Consensus 175 ~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------~~F~~~~~wv~v~~~~~~~~ 235 (814)
..+++...+..+. ...+.++|+.|+||+++|..+++----. +..++ +.|+.-...
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~----- 84 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEKE----- 84 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCcC-----
Confidence 4456666666555 5678999999999999999886521000 01122 223321100
Q ss_pred HHHHHHHHhCCCCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEcccccc
Q 003515 236 IVQKVYQHKGYAVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVFP 309 (814)
Q Consensus 236 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~~ 309 (814)
...-..+.+..+.+.+ ....+++-++|+|++..-... ++..+....+++.+|++|.+...
T Consensus 85 --------------~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~ 150 (319)
T PRK06090 85 --------------GKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKR 150 (319)
T ss_pred --------------CCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhh
Confidence 0001112223333333 222466678999998765533 55666666667887777776532
Q ss_pred C------CCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHHH
Q 003515 310 Q------FGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVV 365 (814)
Q Consensus 310 ~------~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 365 (814)
- -...+.+.+++.+++.+.+.... . . ....++..++|.|+.+..+
T Consensus 151 lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~------~-~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 151 LLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----I------T-VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ChHHHHhcceeEeCCCCCHHHHHHHHHHcC----C------c-hHHHHHHHcCCCHHHHHHH
Confidence 2 22278999999999988886531 1 1 2457789999999876554
No 176
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.27 E-value=8.6e-05 Score=85.78 Aligned_cols=34 Identities=32% Similarity=0.609 Sum_probs=14.1
Q ss_pred CCCCccEEEeecCCCCCCCchhccCCCCcCEeeccc
Q 003515 673 DIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLAS 708 (814)
Q Consensus 673 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~ 708 (814)
++++|..||++++. +..+ .++++|+||++|.+++
T Consensus 171 sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 171 SFPNLRSLDISGTN-ISNL-SGISRLKNLQVLSMRN 204 (699)
T ss_pred ccCccceeecCCCC-ccCc-HHHhccccHHHHhccC
Confidence 34444444444422 2222 3344444444444443
No 177
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.26 E-value=0.0016 Score=59.69 Aligned_cols=90 Identities=19% Similarity=0.160 Sum_probs=46.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhccc
Q 003515 189 QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPI 268 (814)
Q Consensus 189 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~l 268 (814)
..+.|+|++|+||||+++.++. ....... .++++..+........... ........ ...........+....+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~-- 75 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAR--ELGPPGG-GVIYIDGEDILEEVLDQLL-LIIVGGKK-ASGSGELRLRLALALAR-- 75 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHh--ccCCCCC-CEEEECCEEccccCHHHHH-hhhhhccC-CCCCHHHHHHHHHHHHH--
Confidence 5789999999999999999987 3333321 2556665544332222211 11111111 11112222222222221
Q ss_pred CCCcEEEEEeCCCCCch
Q 003515 269 RPEAILLVLDDVWSGSE 285 (814)
Q Consensus 269 ~~kr~LlVlDdv~~~~~ 285 (814)
..+..+|++|++.....
T Consensus 76 ~~~~~viiiDei~~~~~ 92 (148)
T smart00382 76 KLKPDVLILDEITSLLD 92 (148)
T ss_pred hcCCCEEEEECCcccCC
Confidence 22259999999976553
No 178
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.25 E-value=0.00022 Score=82.43 Aligned_cols=144 Identities=17% Similarity=0.169 Sum_probs=96.3
Q ss_pred CCccEEecccCcCc-CcCCcccc-CCCCccEEEeecCCCCC-CCchhccCCCCcCEeecccCCCCCCCccccCCCCCCCE
Q 003515 651 PNLLEIDIDYCNDL-IELPDGLC-DIVSIKKLRITNCHKLS-ALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNF 727 (814)
Q Consensus 651 ~~L~~L~L~~~~~~-~~lp~~i~-~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~ 727 (814)
.+|++|++++.... ...|..++ .||+|+.|.+.+-.+.. ++..-..+++||..||+++++ +..+ .++++|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence 46788888775432 33444454 47899999998744322 334456689999999999954 5555 78999999999
Q ss_pred EeccCCCCCC-ccchhhcCCCCCCEEeccCCCCCCcC-------hhhhcCCCCCEEEcCCchhh--hhHhhhhcCCCcE
Q 003515 728 LDISECLNIQ-ELPERIGELCSLKTLCLKGCSMFELP-------SSILNLENLEVVKCDEETAY--QWEYFQLGQAKFR 796 (814)
Q Consensus 728 L~l~~~~~~~-~lp~~l~~l~~L~~L~l~~~~l~~lp-------~~l~~l~~L~~L~l~~~~~~--~~~~~~~~l~~l~ 796 (814)
|.+.+-.... .--..+-.|++|+.||+|......-+ +.-..|++|+.|||++.... ....+-..=|+|+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 9998743322 11235678999999999987744322 12245999999999975333 2344444345444
No 179
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.24 E-value=0.00076 Score=73.57 Aligned_cols=163 Identities=15% Similarity=0.216 Sum_probs=89.8
Q ss_pred CCCCCccchhHHHHHHHh----h---------CCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCH
Q 003515 167 PVTPGLDVPLQELKLELF----K---------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNV 233 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~ 233 (814)
.++.|.+.++++|.+.+. . ...+-+.++|++|+|||++|+++++ .....| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f------i~V~~s--- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF------LRVVGS--- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE------EEEecc---
Confidence 355789999988887764 1 1245688999999999999999998 443333 222111
Q ss_pred HHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhc-ccCCCcEEEEEeCCCCCc-----------hH-------HHhhhcc-
Q 003515 234 KGIVQKVYQHKGYAVPEFQTDEDAINDLERLLK-PIRPEAILLVLDDVWSGS-----------ES-------LLQKFKF- 293 (814)
Q Consensus 234 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~l~~kr~LlVlDdv~~~~-----------~~-------~~~~~~~- 293 (814)
++. ....+ .....+..+++ .....+.+|+||+++... .. ++..+..
T Consensus 252 -eL~----~k~~G---------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~ 317 (438)
T PTZ00361 252 -ELI----QKYLG---------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGF 317 (438)
T ss_pred -hhh----hhhcc---------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhh
Confidence 111 11100 01112233331 114567899999874210 00 1111111
Q ss_pred -cCCCeEEEEEccccc------c---CCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCc
Q 003515 294 -QLPYYKILVTSRSVF------P---QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGC 358 (814)
Q Consensus 294 -~~~gs~iivTtR~~~------~---~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 358 (814)
...+.+||+||.... . .....++++..+.++..++|..+........ ......++..+.|+
T Consensus 318 ~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~----dvdl~~la~~t~g~ 388 (438)
T PTZ00361 318 DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAE----DVDLEEFIMAKDEL 388 (438)
T ss_pred cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCc----CcCHHHHHHhcCCC
Confidence 123567888887541 1 1223688999999999999987763322211 11234555566554
No 180
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.23 E-value=0.003 Score=75.27 Aligned_cols=44 Identities=25% Similarity=0.257 Sum_probs=36.4
Q ss_pred CCCCCccchhHHHHHHHhh------CCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 167 PVTPGLDVPLQELKLELFK------DGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
..++|.+..++.|.+++.. ...+++.++|++|+|||++|+.+++
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~ 369 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK 369 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4578999999998887651 1345899999999999999999997
No 181
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.23 E-value=0.013 Score=62.01 Aligned_cols=162 Identities=16% Similarity=0.115 Sum_probs=97.3
Q ss_pred chhHHHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhchhhhc-------------------cCCCcEEEEEecCCCCH
Q 003515 174 VPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLG-------------------KFKDNIFFVTVSQTPNV 233 (814)
Q Consensus 174 ~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~~wv~v~~~~~~ 233 (814)
...+++.+.+..+. ..-+.+.|+.|+||+++|..++.----.. ..++ +.++.-...
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~--- 84 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLTPEKG--- 84 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecccc---
Confidence 34567777777555 56788999999999999988765210000 1111 222211000
Q ss_pred HHHHHHHHHHhCCCCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEcccc
Q 003515 234 KGIVQKVYQHKGYAVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSV 307 (814)
Q Consensus 234 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~ 307 (814)
...-..+.+..+.+.+ ....+++-++|+|+++.-... ++..+....+++.+|.+|.+.
T Consensus 85 ----------------~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~ 148 (334)
T PRK07993 85 ----------------KSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREP 148 (334)
T ss_pred ----------------cccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 0001122233343333 334578889999998765533 566666666678877777765
Q ss_pred cc------CCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHH
Q 003515 308 FP------QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 363 (814)
Q Consensus 308 ~~------~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 363 (814)
.. .-...+.+.+++.+++.+.+.... + ..++.+..++..++|.|..+.
T Consensus 149 ~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~---~-----~~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 149 ARLLATLRSRCRLHYLAPPPEQYALTWLSREV---T-----MSQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred hhChHHHHhccccccCCCCCHHHHHHHHHHcc---C-----CCHHHHHHHHHHcCCCHHHHH
Confidence 22 122368899999999888776431 0 123447788999999996443
No 182
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.21 E-value=0.0034 Score=68.04 Aligned_cols=164 Identities=16% Similarity=0.194 Sum_probs=90.7
Q ss_pred CCCCCccchhHHHHHHHh----h---------CCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCH
Q 003515 167 PVTPGLDVPLQELKLELF----K---------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNV 233 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~ 233 (814)
.++.|.+..+++|.+.+. . ...+-+.++|++|+|||++|+++++ ..... ++.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~--~l~~~------fi~i~~---- 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAH--HTTAT------FIRVVG---- 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hcCCC------EEEEeh----
Confidence 456888888888877664 1 1256789999999999999999997 33222 222211
Q ss_pred HHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhc-ccCCCcEEEEEeCCCCC-----------chH-------HHhhhcc-
Q 003515 234 KGIVQKVYQHKGYAVPEFQTDEDAINDLERLLK-PIRPEAILLVLDDVWSG-----------SES-------LLQKFKF- 293 (814)
Q Consensus 234 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~l~~kr~LlVlDdv~~~-----------~~~-------~~~~~~~- 293 (814)
..+ .....+ +....+.+.+. .....+.+|+||+++.. +.. ++..+..
T Consensus 213 s~l----~~k~~g---------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 213 SEF----VQKYLG---------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred HHH----HHHhcc---------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 111 111100 01122333331 12467899999997531 001 1111211
Q ss_pred -cCCCeEEEEEccccc------c---CCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCch
Q 003515 294 -QLPYYKILVTSRSVF------P---QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCP 359 (814)
Q Consensus 294 -~~~gs~iivTtR~~~------~---~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P 359 (814)
...+..||+||.... . .....++++..+.++..++|..+........ .-...++++.+.|.-
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~----dvd~~~la~~t~g~s 351 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSE----EVDLEDFVSRPEKIS 351 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCc----ccCHHHHHHHcCCCC
Confidence 123567888887541 1 1223578888888888888886653322111 112456666666653
No 183
>PRK10536 hypothetical protein; Provisional
Probab=97.21 E-value=0.0035 Score=62.51 Aligned_cols=129 Identities=12% Similarity=0.110 Sum_probs=71.9
Q ss_pred CCCCccchhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCC----------CCHH---
Q 003515 168 VTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQT----------PNVK--- 234 (814)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~----------~~~~--- 234 (814)
.+.+|......++.++.+. .++.+.|.+|.|||+||.++..+.-..+.|.. + .+.=+.. -+..
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~k-I-iI~RP~v~~ge~LGfLPG~~~eK~ 131 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDR-I-IVTRPVLQADEDLGFLPGDIAEKF 131 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeE-E-EEeCCCCCchhhhCcCCCCHHHHH
Confidence 3467888888888888753 49999999999999999998874222344543 3 3321110 0111
Q ss_pred -HHHHHHHHHhCCCCCCCCChHHHHHHHH----HHh-----cccCCCcE---EEEEeCCCCCchHHHhhhc-ccCCCeEE
Q 003515 235 -GIVQKVYQHKGYAVPEFQTDEDAINDLE----RLL-----KPIRPEAI---LLVLDDVWSGSESLLQKFK-FQLPYYKI 300 (814)
Q Consensus 235 -~~~~~i~~~l~~~~~~~~~~~~~~~~l~----~~l-----~~l~~kr~---LlVlDdv~~~~~~~~~~~~-~~~~gs~i 300 (814)
..+.-+...+..-.. . ...+.+. ..+ ..++|+.+ +||+|++.+.+......+. -.+.+|++
T Consensus 132 ~p~~~pi~D~L~~~~~----~-~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~g~~sk~ 206 (262)
T PRK10536 132 APYFRPVYDVLVRRLG----A-SFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTV 206 (262)
T ss_pred HHHHHHHHHHHHHHhC----h-HHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhcCCCCEE
Confidence 112222222211000 0 0111110 001 23466655 9999999887755444433 34578999
Q ss_pred EEEcc
Q 003515 301 LVTSR 305 (814)
Q Consensus 301 ivTtR 305 (814)
|+|--
T Consensus 207 v~~GD 211 (262)
T PRK10536 207 IVNGD 211 (262)
T ss_pred EEeCC
Confidence 98764
No 184
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.19 E-value=0.0017 Score=68.36 Aligned_cols=102 Identities=15% Similarity=0.178 Sum_probs=63.6
Q ss_pred HHHHHHHhh-CCcEEEEEEcCCCCCHHHHHHHHhhchhhhccC-CCcEEEEEecCC-CCHHHHHHHHHHHhCCCCCCCCC
Q 003515 177 QELKLELFK-DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF-KDNIFFVTVSQT-PNVKGIVQKVYQHKGYAVPEFQT 253 (814)
Q Consensus 177 ~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~~ 253 (814)
.++++.+.. ..-..+.|+|.+|+|||||++.+++ .+.... +..++|+.+.+. .++.++.+.+...+.....+...
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 456666662 2345679999999999999999887 443332 343468778665 46788888888766543322111
Q ss_pred hH--HHHHHHHHHhccc--CCCcEEEEEeCC
Q 003515 254 DE--DAINDLERLLKPI--RPEAILLVLDDV 280 (814)
Q Consensus 254 ~~--~~~~~l~~~l~~l--~~kr~LlVlDdv 280 (814)
.. .....+.+..+++ ++++.+||+|++
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 11 1111122222222 699999999998
No 185
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.17 E-value=0.00066 Score=67.25 Aligned_cols=36 Identities=39% Similarity=0.534 Sum_probs=29.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEe
Q 003515 189 QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTV 227 (814)
Q Consensus 189 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v 227 (814)
-.++|+|..|.|||||+..+.. .....|+. +++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~-I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDH-IFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCE-EEEEec
Confidence 3578999999999999999987 57778865 766654
No 186
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.17 E-value=0.014 Score=65.00 Aligned_cols=136 Identities=19% Similarity=0.224 Sum_probs=91.9
Q ss_pred CCCCCCCccchhHHHHHHHh----h-CCcEEEEEEcCCCCCHHHHHHHHhhchh------hhccCCCcEEEEEecCCCCH
Q 003515 165 PPPVTPGLDVPLQELKLELF----K-DGRQVIVVSAPGGYGKTTLVKKLCKDDQ------VLGKFKDNIFFVTVSQTPNV 233 (814)
Q Consensus 165 ~~~~~vGr~~~~~~l~~~L~----~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~------~~~~F~~~~~wv~v~~~~~~ 233 (814)
.|..+-+|+.+..+|..++. . .....+-|.|-+|.|||..+..|.+.-. -...|+. + .|+.-.-...
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-v-eINgm~l~~~ 471 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-V-EINGLRLASP 471 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-E-EEcceeecCH
Confidence 34566899999999988776 2 3355899999999999999999987321 1234654 3 5555566679
Q ss_pred HHHHHHHHHHhCCCCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCC---CCCchHHHhhh-cc-cCCCeEEEEEcc
Q 003515 234 KGIVQKVYQHKGYAVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDV---WSGSESLLQKF-KF-QLPYYKILVTSR 305 (814)
Q Consensus 234 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~l~~kr~LlVlDdv---~~~~~~~~~~~-~~-~~~gs~iivTtR 305 (814)
.++...|..++.+... ......+.|...+ ..-+.+.++|++|++ |...++++-.| .+ ..++||++|-+=
T Consensus 472 ~~~Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~I 547 (767)
T KOG1514|consen 472 REIYEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAI 547 (767)
T ss_pred HHHHHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEe
Confidence 9999999999876532 2344455555555 223567788888886 44445544443 33 567888776653
No 187
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.11 E-value=0.0075 Score=71.27 Aligned_cols=45 Identities=22% Similarity=0.240 Sum_probs=38.2
Q ss_pred CCCCCCccchhHHHHHHHhh------CCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 166 PPVTPGLDVPLQELKLELFK------DGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
+...+|.+..++.|+++|.. ....++.++|++|+||||+|+.++.
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 35679999999999988872 2356899999999999999999986
No 188
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.11 E-value=0.00062 Score=66.18 Aligned_cols=57 Identities=21% Similarity=0.282 Sum_probs=38.2
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCC-CCHHHHHHHHHHHhCCC
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQT-PNVKGIVQKVYQHKGYA 247 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~-~~~~~~~~~i~~~l~~~ 247 (814)
+++|.++|+.|+||||.+..++. +...+ ..++..++.... ....+-++...+.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa--~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAA--RLKLK-GKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH--HHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHH--HHhhc-cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 47899999999999987766665 33333 556778886432 24556667777777754
No 189
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.08 E-value=0.0062 Score=57.36 Aligned_cols=115 Identities=16% Similarity=0.252 Sum_probs=67.2
Q ss_pred CccchhHHHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhchhhh------------------ccCCCcEEEEEecCC-
Q 003515 171 GLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVL------------------GKFKDNIFFVTVSQT- 230 (814)
Q Consensus 171 Gr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------~~F~~~~~wv~v~~~- 230 (814)
|-++..+.+.+.+..+. ...+.++|..|+||+++|..+++.---. ...+. +.|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD-FIIIKPDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT-EEEEETTTSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc-eEEEeccccc
Confidence 44555667777776666 4568999999999999998887621000 12333 445533222
Q ss_pred --CCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEE
Q 003515 231 --PNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILV 302 (814)
Q Consensus 231 --~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iiv 302 (814)
..++ .+..+...+ ....+++-++|+||+...... ++..+.....++.+|+
T Consensus 80 ~~i~i~----------------------~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL 137 (162)
T PF13177_consen 80 KSIKID----------------------QIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFIL 137 (162)
T ss_dssp SSBSHH----------------------HHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEE
T ss_pred chhhHH----------------------HHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEE
Confidence 1222 222333333 222467789999999776543 5555556667899999
Q ss_pred Eccccc
Q 003515 303 TSRSVF 308 (814)
Q Consensus 303 TtR~~~ 308 (814)
+|++..
T Consensus 138 ~t~~~~ 143 (162)
T PF13177_consen 138 ITNNPS 143 (162)
T ss_dssp EES-GG
T ss_pred EECChH
Confidence 998763
No 190
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.07 E-value=0.0048 Score=69.77 Aligned_cols=163 Identities=13% Similarity=0.141 Sum_probs=87.7
Q ss_pred CCCCCccchhHHHHHHHh---h---------CCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHH
Q 003515 167 PVTPGLDVPLQELKLELF---K---------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVK 234 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 234 (814)
++++|.+..++++.+++. . ...+-+.++|++|+|||+||++++.. .. +-++.++. .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~------~~~~~i~~----~ 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AG------VPFFSISG----S 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cC------CCeeeccH----H
Confidence 456788777666655443 1 11345889999999999999999873 21 11333321 1
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHhc-ccCCCcEEEEEeCCCCCc-----------h---HHHhhhc------c
Q 003515 235 GIVQKVYQHKGYAVPEFQTDEDAINDLERLLK-PIRPEAILLVLDDVWSGS-----------E---SLLQKFK------F 293 (814)
Q Consensus 235 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~l~~kr~LlVlDdv~~~~-----------~---~~~~~~~------~ 293 (814)
++.. ..... ....++.+++ .....+++|+|||++... + ..+..+. .
T Consensus 123 ~~~~----~~~g~---------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~ 189 (495)
T TIGR01241 123 DFVE----MFVGV---------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 189 (495)
T ss_pred HHHH----HHhcc---------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc
Confidence 1111 11000 1122333332 124567899999984311 0 1111121 1
Q ss_pred cCCCeEEEEEccccc------c---CCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCc
Q 003515 294 QLPYYKILVTSRSVF------P---QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGC 358 (814)
Q Consensus 294 ~~~gs~iivTtR~~~------~---~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 358 (814)
...+..||.||.... . .....+.++..+.++-.++|..+....... .......+++.+.|.
T Consensus 190 ~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~----~~~~l~~la~~t~G~ 259 (495)
T TIGR01241 190 TNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA----PDVDLKAVARRTPGF 259 (495)
T ss_pred CCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC----cchhHHHHHHhCCCC
Confidence 123445666665431 1 123367888888888888888766332211 122345788888774
No 191
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.014 Score=67.13 Aligned_cols=107 Identities=19% Similarity=0.284 Sum_probs=62.5
Q ss_pred CCCCccchhHHHHHHHhh---------CCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCc--EEEEEecCCCCHHHH
Q 003515 168 VTPGLDVPLQELKLELFK---------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDN--IFFVTVSQTPNVKGI 236 (814)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~--~~wv~v~~~~~~~~~ 236 (814)
.++|-+..++.+.+.+.. ....+....|+.|||||-||++++. . -|+.. .+-++.|+....+.+
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~--~---Lfg~e~aliR~DMSEy~EkHsV 566 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE--A---LFGDEQALIRIDMSEYMEKHSV 566 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH--H---hcCCCccceeechHHHHHHHHH
Confidence 568999999999888872 1245677899999999999999986 2 24321 334444443222221
Q ss_pred HHHHHHHhCCCCCCCCChHHHHHHHHHHhcccCCCcE-EEEEeCCCCCchHHH
Q 003515 237 VQKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAI-LLVLDDVWSGSESLL 288 (814)
Q Consensus 237 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~kr~-LlVlDdv~~~~~~~~ 288 (814)
..+-+..|..-.-++ -.+|- +..+.++| +|.||++.....++.
T Consensus 567 -----SrLIGaPPGYVGyee-GG~LT---EaVRr~PySViLlDEIEKAHpdV~ 610 (786)
T COG0542 567 -----SRLIGAPPGYVGYEE-GGQLT---EAVRRKPYSVILLDEIEKAHPDVF 610 (786)
T ss_pred -----HHHhCCCCCCceecc-ccchh---HhhhcCCCeEEEechhhhcCHHHH
Confidence 222222222211111 11222 33367777 888999976665533
No 192
>PRK08118 topology modulation protein; Reviewed
Probab=97.03 E-value=0.00031 Score=66.54 Aligned_cols=35 Identities=26% Similarity=0.545 Sum_probs=26.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhhchhhh-ccCCCcEEE
Q 003515 189 QVIVVSAPGGYGKTTLVKKLCKDDQVL-GKFKDNIFF 224 (814)
Q Consensus 189 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~~w 224 (814)
+.|.|+|++|+||||||+.+++...+. -+|+. ++|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~-l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA-LFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch-hhc
Confidence 358999999999999999999843332 34554 554
No 193
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0093 Score=61.20 Aligned_cols=172 Identities=16% Similarity=0.205 Sum_probs=98.5
Q ss_pred CCCccchhHHHHHHHh----h---------CCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHH
Q 003515 169 TPGLDVPLQELKLELF----K---------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKG 235 (814)
Q Consensus 169 ~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~ 235 (814)
+=|-++++++|.+.+. + +.++=|.++|++|.|||-||++|++ +.... |+.|..
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~At------FIrvvg------ 218 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDAT------FIRVVG------ 218 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCce------EEEecc------
Confidence 3478888999888775 1 2356788999999999999999998 44333 444432
Q ss_pred HHHHHHHHhCCCCCCCCChHHHHHHHHHHhccc-CCCcEEEEEeCCCCCc-----------h-------HHHhhhcccC-
Q 003515 236 IVQKVYQHKGYAVPEFQTDEDAINDLERLLKPI-RPEAILLVLDDVWSGS-----------E-------SLLQKFKFQL- 295 (814)
Q Consensus 236 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~l-~~kr~LlVlDdv~~~~-----------~-------~~~~~~~~~~- 295 (814)
.++++..-+. . ...++++++.. ...++.|++|.++... . +++..+..+.
T Consensus 219 --SElVqKYiGE------G---aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 219 --SELVQKYIGE------G---ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred --HHHHHHHhcc------c---hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 1222222111 1 12233333211 4678999999884211 1 1333333333
Q ss_pred -CCeEEEEEccccc------cCCC---CccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCch----hH
Q 003515 296 -PYYKILVTSRSVF------PQFG---SGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCP----LA 361 (814)
Q Consensus 296 -~gs~iivTtR~~~------~~~~---~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P----la 361 (814)
.+.|||..|.... ...| ..++++.-+.+.-.++|+-++..-.-..+. -.+.+++.|.|.- .|
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dv----d~e~la~~~~g~sGAdlka 363 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDV----DLELLARLTEGFSGADLKA 363 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCc----CHHHHHHhcCCCchHHHHH
Confidence 3578998886542 1122 257777555566667777666443332222 2456667777664 44
Q ss_pred HHHHHHHh
Q 003515 362 LTVVGGSL 369 (814)
Q Consensus 362 i~~~~~~L 369 (814)
+.+=|+++
T Consensus 364 ictEAGm~ 371 (406)
T COG1222 364 ICTEAGMF 371 (406)
T ss_pred HHHHHhHH
Confidence 55555555
No 194
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.01 E-value=0.0076 Score=65.66 Aligned_cols=127 Identities=22% Similarity=0.219 Sum_probs=74.3
Q ss_pred hhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCh
Q 003515 175 PLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTD 254 (814)
Q Consensus 175 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~ 254 (814)
-..++.+.+..... ++.|.|+-++||||+++.+.. ..... ++++..-+......-+
T Consensus 25 ~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~--~~~~~----~iy~~~~d~~~~~~~l----------------- 80 (398)
T COG1373 25 LLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIK--GLLEE----IIYINFDDLRLDRIEL----------------- 80 (398)
T ss_pred hhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHh--hCCcc----eEEEEecchhcchhhH-----------------
Confidence 34444444443333 999999999999999976665 22222 3455443321111111
Q ss_pred HHHHHHHHHHhcccCCCcEEEEEeCCCCCchH--HHhhhcccCCCeEEEEEccccc----------cCCCCccccCCCCH
Q 003515 255 EDAINDLERLLKPIRPEAILLVLDDVWSGSES--LLQKFKFQLPYYKILVTSRSVF----------PQFGSGYDLKPLND 322 (814)
Q Consensus 255 ~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~~~--~~~~~~~~~~gs~iivTtR~~~----------~~~~~~~~l~~L~~ 322 (814)
.+.+..+.+.-..++.+|+||.|....+| .+..+....+. +|++|+-+.. .+-+..+++.||+-
T Consensus 81 ---~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF 156 (398)
T COG1373 81 ---LDLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSF 156 (398)
T ss_pred ---HHHHHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCH
Confidence 11122222111227899999999887766 44555555555 7888877652 22233789999999
Q ss_pred HHHHHHH
Q 003515 323 EAARTLF 329 (814)
Q Consensus 323 ~~~~~Lf 329 (814)
.|...+.
T Consensus 157 ~Efl~~~ 163 (398)
T COG1373 157 REFLKLK 163 (398)
T ss_pred HHHHhhc
Confidence 9886654
No 195
>CHL00176 ftsH cell division protein; Validated
Probab=96.98 E-value=0.011 Score=67.98 Aligned_cols=162 Identities=15% Similarity=0.169 Sum_probs=90.1
Q ss_pred CCCCCccchhHHHHHHH---hhC---------CcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHH
Q 003515 167 PVTPGLDVPLQELKLEL---FKD---------GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVK 234 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L---~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 234 (814)
++++|.++..+++.+.+ ... ..+-|.++|++|+|||+||++++.. .. +-++.++. .
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~------~p~i~is~----s 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AE------VPFFSISG----S 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hC------CCeeeccH----H
Confidence 35678877766665544 321 1346899999999999999999873 21 22343321 1
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCCc--------------hHHHhhhcc------
Q 003515 235 GIVQKVYQHKGYAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSGS--------------ESLLQKFKF------ 293 (814)
Q Consensus 235 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~l~~kr~LlVlDdv~~~~--------------~~~~~~~~~------ 293 (814)
++.. .... .....++.++ ......+++|++||++... +..+..+..
T Consensus 251 ~f~~----~~~g---------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~ 317 (638)
T CHL00176 251 EFVE----MFVG---------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK 317 (638)
T ss_pred HHHH----Hhhh---------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc
Confidence 1111 1000 0112334444 2235778999999995321 112222211
Q ss_pred cCCCeEEEEEccccc------c---CCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCC
Q 003515 294 QLPYYKILVTSRSVF------P---QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKG 357 (814)
Q Consensus 294 ~~~gs~iivTtR~~~------~---~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g 357 (814)
...+..||.||.... . .....+.++..+.++-.++++.++..... ........+++.+.|
T Consensus 318 ~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~----~~d~~l~~lA~~t~G 386 (638)
T CHL00176 318 GNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL----SPDVSLELIARRTPG 386 (638)
T ss_pred CCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc----chhHHHHHHHhcCCC
Confidence 223456666665531 1 12236788888888888888877643211 123346678888777
No 196
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.98 E-value=0.00013 Score=80.50 Aligned_cols=154 Identities=17% Similarity=0.211 Sum_probs=88.7
Q ss_pred cccccccceecccccccccCcccccccCCCCccEEecccCcCcCc---------CCccccC-------------------
Q 003515 622 MKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIE---------LPDGLCD------------------- 673 (814)
Q Consensus 622 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~---------lp~~i~~------------------- 673 (814)
+.++..|.+.......-. .+..++ +|..|++|.+.+|++... +-.-|+.
T Consensus 83 lqkt~~lkl~~~pa~~pt--~pi~if-pF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~n 159 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPT--EPISIF-PFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISN 159 (1096)
T ss_pred HhhheeeeecccCCCCCC--CCceec-cccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhcccccc
Confidence 455555555544322211 122222 788999999999975431 0000110
Q ss_pred ---CCCccEEEeecCCCCCCCchhccCCCCcCEeecccCCCCCCCccccCCCCCCCEEeccCCCCCCccchhh-cCCCCC
Q 003515 674 ---IVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERI-GELCSL 749 (814)
Q Consensus 674 ---l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~l-~~l~~L 749 (814)
...|...+.++|. +..+..++.-++.|+.|+|+.|+....- .+..|+.|++|||+.| .+..+|..- ..+ .|
T Consensus 160 s~~Wn~L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L 234 (1096)
T KOG1859|consen 160 SPVWNKLATASFSYNR-LVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KL 234 (1096)
T ss_pred chhhhhHhhhhcchhh-HHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhh-hh
Confidence 0123333444332 3445556666778888888887653322 6677888888888876 456666421 223 37
Q ss_pred CEEeccCCCCCCcChhhhcCCCCCEEEcCCchhhh
Q 003515 750 KTLCLKGCSMFELPSSILNLENLEVVKCDEETAYQ 784 (814)
Q Consensus 750 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 784 (814)
+.|.+++|.++.+ .++.+|++|+.||+++|-...
T Consensus 235 ~~L~lrnN~l~tL-~gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 235 QLLNLRNNALTTL-RGIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred eeeeecccHHHhh-hhHHhhhhhhccchhHhhhhc
Confidence 7777777777665 357777777777777664443
No 197
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.95 E-value=0.04 Score=66.30 Aligned_cols=44 Identities=20% Similarity=0.295 Sum_probs=35.8
Q ss_pred CCCCCccchhHHHHHHHhhC-------C--cEEEEEEcCCCCCHHHHHHHHhh
Q 003515 167 PVTPGLDVPLQELKLELFKD-------G--RQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~-------~--~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
..++|.+..++.+...+... + ..++.++|+.|+|||++|+.+++
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 45789999999888887621 1 24788999999999999999986
No 198
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.95 E-value=0.048 Score=65.42 Aligned_cols=44 Identities=23% Similarity=0.289 Sum_probs=36.5
Q ss_pred CCCCCccchhHHHHHHHhh-------C--CcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 167 PVTPGLDVPLQELKLELFK-------D--GRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
..++|.+..++.+.+.+.. . ...++.++|+.|+|||.||+.+++
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~ 618 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE 618 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4679999999999888852 1 235789999999999999999886
No 199
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.94 E-value=0.0007 Score=62.24 Aligned_cols=84 Identities=21% Similarity=0.374 Sum_probs=48.8
Q ss_pred EEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcccCC
Q 003515 191 IVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIRP 270 (814)
Q Consensus 191 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~ 270 (814)
|.++|.+|+|||+||+.+++ .. +..++-+.++...+..++....--. .... .. ... .+.+. -.
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~----~~~~~~i~~~~~~~~~dl~g~~~~~-~~~~-~~-~~~-------~l~~a-~~ 64 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LL----GRPVIRINCSSDTTEEDLIGSYDPS-NGQF-EF-KDG-------PLVRA-MR 64 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HH----TCEEEEEE-TTTSTHHHHHCEEET--TTTT-CE-EE--------CCCTT-HH
T ss_pred EEEECCCCCCHHHHHHHHHH--Hh----hcceEEEEeccccccccceeeeeec-cccc-cc-ccc-------ccccc-cc
Confidence 67999999999999999997 33 4445567788888887766433221 0000 00 000 00000 12
Q ss_pred CcEEEEEeCCCCCchHHHhhh
Q 003515 271 EAILLVLDDVWSGSESLLQKF 291 (814)
Q Consensus 271 kr~LlVlDdv~~~~~~~~~~~ 291 (814)
+..++|||++.......+..+
T Consensus 65 ~~~il~lDEin~a~~~v~~~L 85 (139)
T PF07728_consen 65 KGGILVLDEINRAPPEVLESL 85 (139)
T ss_dssp EEEEEEESSCGG--HHHHHTT
T ss_pred ceeEEEECCcccCCHHHHHHH
Confidence 789999999976655544444
No 200
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.91 E-value=8e-05 Score=65.02 Aligned_cols=83 Identities=19% Similarity=0.340 Sum_probs=42.0
Q ss_pred cCCCCcCEeecccCCCCCCCccccCC-CCCCCEEeccCCCCCCccchhhcCCCCCCEEeccCCCCCCcChhhhcCCCCCE
Q 003515 696 GKLVNLQMLTLASCTDLSALPDTIGN-LSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEV 774 (814)
Q Consensus 696 ~~l~~L~~L~L~~~~~~~~lp~~l~~-L~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~ 774 (814)
...+.|...+|++|. ...+|+.+.. ++.++.|++.+| .+..+|.++..++.|+.|+++.|++...|..+..|.+|..
T Consensus 50 ~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 50 SKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDM 127 (177)
T ss_pred hCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHH
Confidence 334445555555543 2344443332 235555555554 3455555555555555555555555555555555555555
Q ss_pred EEcCCc
Q 003515 775 VKCDEE 780 (814)
Q Consensus 775 L~l~~~ 780 (814)
|+..++
T Consensus 128 Lds~~n 133 (177)
T KOG4579|consen 128 LDSPEN 133 (177)
T ss_pred hcCCCC
Confidence 555444
No 201
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.86 E-value=0.019 Score=59.00 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=34.9
Q ss_pred hHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHH
Q 003515 176 LQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIV 237 (814)
Q Consensus 176 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~ 237 (814)
++++..++..+ +.|.+.|.+|+|||+||+.+++ .. ....+.+++....+..+++
T Consensus 11 ~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~--~l----g~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 11 TSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVAR--KR----DRPVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHH--Hh----CCCEEEEeCCccCCHHHHh
Confidence 34444444432 3566899999999999999986 22 2234567776665555554
No 202
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.86 E-value=0.002 Score=62.44 Aligned_cols=127 Identities=15% Similarity=0.140 Sum_probs=61.1
Q ss_pred ccchhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCC------CCH-------HHHHH
Q 003515 172 LDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQT------PNV-------KGIVQ 238 (814)
Q Consensus 172 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~------~~~-------~~~~~ 238 (814)
+..+-...++.|. ...++.+.|++|.|||.||.+.+-+.-..+.|+. ++++.-.-. +-+ .....
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~k-iii~Rp~v~~~~~lGflpG~~~eK~~p~~~ 81 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDK-IIITRPPVEAGEDLGFLPGDLEEKMEPYLR 81 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SE-EEEEE-S--TT----SS---------TTTH
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcE-EEEEecCCCCccccccCCCCHHHHHHHHHH
Confidence 4455566677777 4569999999999999999888765444566765 655542111 000 11122
Q ss_pred HHHHHhCCCCCCCCChHHHHHHHHHH-h-----cccCCC---cEEEEEeCCCCCchHHHhhhc-ccCCCeEEEEEcc
Q 003515 239 KVYQHKGYAVPEFQTDEDAINDLERL-L-----KPIRPE---AILLVLDDVWSGSESLLQKFK-FQLPYYKILVTSR 305 (814)
Q Consensus 239 ~i~~~l~~~~~~~~~~~~~~~~l~~~-l-----~~l~~k---r~LlVlDdv~~~~~~~~~~~~-~~~~gs~iivTtR 305 (814)
-+...+..-... ...+. .+.+- + ..++|+ ...||+|++.+.....+..+. -.+.|||+|++=-
T Consensus 82 p~~d~l~~~~~~-~~~~~---~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~g~~skii~~GD 154 (205)
T PF02562_consen 82 PIYDALEELFGK-EKLEE---LIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRIGEGSKIIITGD 154 (205)
T ss_dssp HHHHHHTTTS-T-TCHHH---HHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE-
T ss_pred HHHHHHHHHhCh-HhHHH---HhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcccCCCcEEEEecC
Confidence 223333221111 01111 11110 0 233554 469999999777655444433 3467899999864
No 203
>PRK08181 transposase; Validated
Probab=96.85 E-value=0.0031 Score=64.38 Aligned_cols=98 Identities=20% Similarity=0.264 Sum_probs=53.4
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcc
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKP 267 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 267 (814)
..-+.++|.+|+|||.||.++.+ ...... ..+.|+++ .+++..+...... .... ..+.. +
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~--~a~~~g-~~v~f~~~------~~L~~~l~~a~~~-----~~~~---~~l~~-l-- 165 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGL--ALIENG-WRVLFTRT------TDLVQKLQVARRE-----LQLE---SAIAK-L-- 165 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHH--HHHHcC-CceeeeeH------HHHHHHHHHHHhC-----CcHH---HHHHH-H--
Confidence 45689999999999999999987 333322 22556653 4555555443211 0111 11221 2
Q ss_pred cCCCcEEEEEeCCCCCc--hH----HHhhhcccCCCeEEEEEcccc
Q 003515 268 IRPEAILLVLDDVWSGS--ES----LLQKFKFQLPYYKILVTSRSV 307 (814)
Q Consensus 268 l~~kr~LlVlDdv~~~~--~~----~~~~~~~~~~gs~iivTtR~~ 307 (814)
.+.=||||||+.... ++ +..-+...-.+..+||||...
T Consensus 166 --~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 166 --DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred --hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 233499999984322 11 222222211234689998753
No 204
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.84 E-value=0.00014 Score=70.86 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=27.1
Q ss_pred hhcCCCCCCcEEEeecccccCccccccc-ccCCCCCCCEEEecCCCCCCc
Q 003515 569 KFLEKMDKLKVMIVTNYGFFPAELSNIQ-VFGALSNLKRIRLEHVSLPSL 617 (814)
Q Consensus 569 ~~l~~l~~Lr~L~l~~~~~~~~~~~~l~-~l~~l~~L~~L~l~~n~l~~~ 617 (814)
+++.+|++|+..++++|.+-|.....+. .+++-.+|.+|.+++|-+..+
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~ 135 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPI 135 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCcc
Confidence 4556677777777777654333222111 245556667777766665443
No 205
>PHA00729 NTP-binding motif containing protein
Probab=96.84 E-value=0.0065 Score=59.59 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=27.3
Q ss_pred HHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 178 ELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 178 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
.+++.+...+...|.|+|.+|+||||||..+.+
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 445556666667899999999999999999987
No 206
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.83 E-value=0.0047 Score=62.56 Aligned_cols=92 Identities=13% Similarity=0.170 Sum_probs=57.5
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCC-HHHHHHHHHHHhCCC-------CCCCCChH----
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPN-VKGIVQKVYQHKGYA-------VPEFQTDE---- 255 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~---- 255 (814)
-.-++|+|..|+|||||++.+++ .+..+|...++++-+++... +.++...+...-... ..+.....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 45789999999999999999998 56656766577777876554 556666665431111 00111111
Q ss_pred -HHHHHHHHHhcccCCCcEEEEEeCCC
Q 003515 256 -DAINDLERLLKPIRPEAILLVLDDVW 281 (814)
Q Consensus 256 -~~~~~l~~~l~~l~~kr~LlVlDdv~ 281 (814)
...-.+.+++..-+++.+|+++||+-
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChh
Confidence 11222344442214999999999983
No 207
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.82 E-value=0.076 Score=56.76 Aligned_cols=193 Identities=17% Similarity=0.194 Sum_probs=114.4
Q ss_pred ccchhHHHHHHHhhCCcEEEEEEcCCCCCHHHHH-HHHhhchhhhccCCCcEEEEEecCC---CCHHHHHHHHHHHhCCC
Q 003515 172 LDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLV-KKLCKDDQVLGKFKDNIFFVTVSQT---PNVKGIVQKVYQHKGYA 247 (814)
Q Consensus 172 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~~wv~v~~~---~~~~~~~~~i~~~l~~~ 247 (814)
|.+.+++|..||....-..|.|.|+-|.||+.|+ .++.++ .+. ++.+++.+- .+...++..++.++|..
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~------r~~-vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKD------RKN-VLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhC------CCC-EEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 6678899999999888889999999999999999 777653 222 667776432 23445555555555432
Q ss_pred C-----------------------CCCC-ChHHH--------HHHHHHHh-------------------cccCCCcEEEE
Q 003515 248 V-----------------------PEFQ-TDEDA--------INDLERLL-------------------KPIRPEAILLV 276 (814)
Q Consensus 248 ~-----------------------~~~~-~~~~~--------~~~l~~~l-------------------~~l~~kr~LlV 276 (814)
. ..+. +.+.. ...|+.+- +.-..++=+||
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 1 1111 11110 11111110 00012356899
Q ss_pred EeCCCCCchH---H------HhhhcccCCCeEEEEEcccccc------CC----CCccccCCCCHHHHHHHHHHHcccCC
Q 003515 277 LDDVWSGSES---L------LQKFKFQLPYYKILVTSRSVFP------QF----GSGYDLKPLNDEAARTLFRYSANLQD 337 (814)
Q Consensus 277 lDdv~~~~~~---~------~~~~~~~~~gs~iivTtR~~~~------~~----~~~~~l~~L~~~~~~~Lf~~~a~~~~ 337 (814)
+||.-...+. + |..-....+=.+||++|-+... +. -..+.+.-.+.+.|.++...+.....
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~ 233 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDT 233 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcccc
Confidence 9998443211 1 2222223344689999987621 11 12678899999999999887764431
Q ss_pred CC------------CC-----CCChHHHHHHHHHcCCchhHHHHHHHHhCC
Q 003515 338 GN------------SY-----IPDENLVNKILRACKGCPLALTVVGGSLCG 371 (814)
Q Consensus 338 ~~------------~~-----~~~~~~~~~i~~~~~g~Plai~~~~~~L~~ 371 (814)
.. .. ..........++.+||=-.=+..+++.++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 234 EDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred cccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 10 00 123445566777788877777777777754
No 208
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.79 E-value=0.07 Score=54.47 Aligned_cols=164 Identities=20% Similarity=0.230 Sum_probs=92.5
Q ss_pred CCCCCccchhHHHHHHHh----hCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCH-HHHHHHHH
Q 003515 167 PVTPGLDVPLQELKLELF----KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNV-KGIVQKVY 241 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~-~~~~~~i~ 241 (814)
..++|-.++..++-+++. ..+..-|.|+|+.|.|||+|...+..+ .+.|....+-|........ +-.++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 356899999999988887 345667889999999999998877764 4445554555666444332 22344554
Q ss_pred HHhC----CCCCCCCChHHHHHHHHHHhc---ccCCCcEEEEEeCCCCCc----hHHHh-hhc----ccCCCeEEEEEcc
Q 003515 242 QHKG----YAVPEFQTDEDAINDLERLLK---PIRPEAILLVLDDVWSGS----ESLLQ-KFK----FQLPYYKILVTSR 305 (814)
Q Consensus 242 ~~l~----~~~~~~~~~~~~~~~l~~~l~---~l~~kr~LlVlDdv~~~~----~~~~~-~~~----~~~~gs~iivTtR 305 (814)
.++. .......+-.+....+-..++ ...+-++.+|+|.++-.- ..++- .|. ...|-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 4442 221111222233344444441 123445788888764322 11221 121 1345677889999
Q ss_pred ccc-------c--CCCC--ccccCCCCHHHHHHHHHHHc
Q 003515 306 SVF-------P--QFGS--GYDLKPLNDEAARTLFRYSA 333 (814)
Q Consensus 306 ~~~-------~--~~~~--~~~l~~L~~~~~~~Lf~~~a 333 (814)
-.. + ...+ ++-++.++-++..++++...
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 641 1 1111 45556666666777666544
No 209
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.79 E-value=0.0043 Score=67.61 Aligned_cols=41 Identities=12% Similarity=0.141 Sum_probs=35.4
Q ss_pred CCCCccchhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 168 VTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
.++||++.++.+...+..+ .-|.|.|++|+|||++|+.+..
T Consensus 21 ~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHH
Confidence 5799999999988877754 3578999999999999999987
No 210
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.76 E-value=0.029 Score=58.67 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
....++|||++|.|||.+|+++++
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~ 170 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFK 170 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHH
Confidence 367899999999999999999998
No 211
>PRK04132 replication factor C small subunit; Provisional
Probab=96.75 E-value=0.037 Score=65.20 Aligned_cols=144 Identities=16% Similarity=0.183 Sum_probs=90.3
Q ss_pred CCCCCHHHHHHHHhhchhh-hccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhccc-CCCcE
Q 003515 196 PGGYGKTTLVKKLCKDDQV-LGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPI-RPEAI 273 (814)
Q Consensus 196 ~gGiGKTtLa~~v~~~~~~-~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~l-~~kr~ 273 (814)
+.++||||+|..+++ .+ .+.++..++-++.++......+. ++++.+.... .+ ..+.-
T Consensus 574 Ph~lGKTT~A~ala~--~l~g~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~------------------~~~~~~~K 632 (846)
T PRK04132 574 PTVLHNTTAALALAR--ELFGENWRHNFLELNASDERGINVIR-EKVKEFARTK------------------PIGGASFK 632 (846)
T ss_pred CCcccHHHHHHHHHH--hhhcccccCeEEEEeCCCcccHHHHH-HHHHHHHhcC------------------CcCCCCCE
Confidence 778999999999998 33 23344446677777655555333 3333221110 01 23457
Q ss_pred EEEEeCCCCCchH----HHhhhcccCCCeEEEEEcccccc------CCCCccccCCCCHHHHHHHHHHHcccCCCCCCCC
Q 003515 274 LLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVFP------QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIP 343 (814)
Q Consensus 274 LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~~------~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~ 343 (814)
++|+|+++.-... ++..+......+++|.+|.+... .-...+.+.+++.++-.+.+...+...+.. -
T Consensus 633 VvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~---i 709 (846)
T PRK04132 633 IIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE---L 709 (846)
T ss_pred EEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC---C
Confidence 9999999877643 33333333456777777766521 122378999999999888887765432221 1
Q ss_pred ChHHHHHHHHHcCCchhHHH
Q 003515 344 DENLVNKILRACKGCPLALT 363 (814)
Q Consensus 344 ~~~~~~~i~~~~~g~Plai~ 363 (814)
.++....|++.++|.+..+.
T Consensus 710 ~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 710 TEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred CHHHHHHHHHHcCCCHHHHH
Confidence 36688999999999885443
No 212
>PRK12377 putative replication protein; Provisional
Probab=96.73 E-value=0.01 Score=59.82 Aligned_cols=75 Identities=25% Similarity=0.347 Sum_probs=45.1
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhc
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLK 266 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 266 (814)
+...+.++|.+|+|||+||.++++ .+...... +.++++. +++..+-...... ... ..+.+.+
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~-v~~i~~~------~l~~~l~~~~~~~----~~~----~~~l~~l- 161 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRS-VIVVTVP------DVMSRLHESYDNG----QSG----EKFLQEL- 161 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCC-eEEEEHH------HHHHHHHHHHhcc----chH----HHHHHHh-
Confidence 346789999999999999999998 44433322 5566553 4555554443211 011 1111112
Q ss_pred ccCCCcEEEEEeCCCC
Q 003515 267 PIRPEAILLVLDDVWS 282 (814)
Q Consensus 267 ~l~~kr~LlVlDdv~~ 282 (814)
.+.=||||||+..
T Consensus 162 ---~~~dLLiIDDlg~ 174 (248)
T PRK12377 162 ---CKVDLLVLDEIGI 174 (248)
T ss_pred ---cCCCEEEEcCCCC
Confidence 3556999999943
No 213
>PRK07261 topology modulation protein; Provisional
Probab=96.70 E-value=0.0043 Score=59.10 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 003515 190 VIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 190 vi~I~G~gGiGKTtLa~~v~~ 210 (814)
.|.|+|++|+||||||+.+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999876
No 214
>PTZ00494 tuzin-like protein; Provisional
Probab=96.70 E-value=1 Score=48.25 Aligned_cols=162 Identities=11% Similarity=0.047 Sum_probs=97.4
Q ss_pred CCCCCCCCCCCCccchhHHHHHHHhh---CCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHH
Q 003515 160 CSAPDPPPVTPGLDVPLQELKLELFK---DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGI 236 (814)
Q Consensus 160 ~~~~~~~~~~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~ 236 (814)
++.+..+..+|.|+.+-..+.+.|.+ ..++++++.|.-|.||++|.+..... .+-+ ..+|+|... ++-
T Consensus 364 ~~a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrk----E~~p--aV~VDVRg~---EDt 434 (664)
T PTZ00494 364 MLAAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRV----EGVA--LVHVDVGGT---EDT 434 (664)
T ss_pred cccccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHH----cCCC--eEEEEecCC---cch
Confidence 44556677889999997777777763 34789999999999999999888752 3333 348888654 455
Q ss_pred HHHHHHHhCCCCCCCCChHHHHHHHHHHh----cccCCCcEEEEEeCC--CCCc--hHHHhhhcccCCCeEEEEEccccc
Q 003515 237 VQKVYQHKGYAVPEFQTDEDAINDLERLL----KPIRPEAILLVLDDV--WSGS--ESLLQKFKFQLPYYKILVTSRSVF 308 (814)
Q Consensus 237 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~l~~kr~LlVlDdv--~~~~--~~~~~~~~~~~~gs~iivTtR~~~ 308 (814)
++.++++++.+..+.- .+..+.+.+.. ....++.=+||+-== .+.. ....-.+...-.-|+|++---.+.
T Consensus 435 LrsVVKALgV~nve~C--GDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~vaLacDrRlCHvv~EVplES 512 (664)
T PTZ00494 435 LRSVVRALGVSNVEVC--GDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVSLVSDCQACHIVLAVPMKA 512 (664)
T ss_pred HHHHHHHhCCCChhhh--ccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHHHHccchhheeeeechHhh
Confidence 7788899886543321 12223333322 223566666665311 1000 001112233333467776554442
Q ss_pred cCCC-------CccccCCCCHHHHHHHHHHH
Q 003515 309 PQFG-------SGYDLKPLNDEAARTLFRYS 332 (814)
Q Consensus 309 ~~~~-------~~~~l~~L~~~~~~~Lf~~~ 332 (814)
..+. ..|-+++++..+|.+.-.+.
T Consensus 513 LT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 513 LTPLNVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred hchhhccCccceeEecCCcCHHHHHHHHhcc
Confidence 1111 26889999999998876654
No 215
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.70 E-value=0.058 Score=64.92 Aligned_cols=44 Identities=25% Similarity=0.323 Sum_probs=35.3
Q ss_pred CCCCCccchhHHHHHHHhhC-------C--cEEEEEEcCCCCCHHHHHHHHhh
Q 003515 167 PVTPGLDVPLQELKLELFKD-------G--RQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~-------~--~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
..++|-+..++.+...+... + ...+.++|+.|+|||+||+.+++
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~ 561 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS 561 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 45789999999998887621 1 34567899999999999999986
No 216
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.67 E-value=0.0021 Score=67.43 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=39.5
Q ss_pred CCCCCCccchhHHHHHHHhh------CCcEEEEEEcCCCCCHHHHHHHHhhc
Q 003515 166 PPVTPGLDVPLQELKLELFK------DGRQVIVVSAPGGYGKTTLVKKLCKD 211 (814)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~ 211 (814)
...++|.++.++++++++.. ...+++.++|++|+||||||+.+.+.
T Consensus 50 ~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 50 DHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred chhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44689999999999999972 23588999999999999999999873
No 217
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.00037 Score=68.92 Aligned_cols=204 Identities=14% Similarity=0.083 Sum_probs=110.4
Q ss_pred CCCCCCcEEEeecccccCcccccccccCCCCCCCEEEecCCCCCCc---cccccccccccceecccccccccCccccccc
Q 003515 572 EKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSL---TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSD 648 (814)
Q Consensus 572 ~~l~~Lr~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 648 (814)
..++.++.+++.+|.+.-. -.-...+.+||.|++|+|+.|++... .+....+|++|-+.+..+.-.-. ..+..
T Consensus 68 ~~~~~v~elDL~~N~iSdW-seI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~---~s~l~ 143 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDW-SEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQS---TSSLD 143 (418)
T ss_pred HHhhhhhhhhcccchhccH-HHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhh---hhhhh
Confidence 4466777777776533211 01112356777777777777777554 12345677777666654332111 11223
Q ss_pred CCCCccEEecccCcCcCcC--CccccCC-CCccEEEeecCCCCCC--CchhccCCCCcCEeecccCCCCC-CCccccCCC
Q 003515 649 AFPNLLEIDIDYCNDLIEL--PDGLCDI-VSIKKLRITNCHKLSA--LPEGIGKLVNLQMLTLASCTDLS-ALPDTIGNL 722 (814)
Q Consensus 649 ~l~~L~~L~L~~~~~~~~l--p~~i~~l-~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~L~L~~~~~~~-~lp~~l~~L 722 (814)
.+|.++.|+++.|+...-. -+.+... +.+++|.+..|....- .-.-..-++|+..+-+..|+.-. .--.....+
T Consensus 144 ~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~ 223 (418)
T KOG2982|consen 144 DLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPF 223 (418)
T ss_pred cchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCC
Confidence 5666677777666422111 0111111 2344554444421100 00001235677777777765322 222445567
Q ss_pred CCCCEEeccCCCCCCcc--chhhcCCCCCCEEeccCCCCC-CcC------hhhhcCCCCCEEEcCCc
Q 003515 723 SNLNFLDISECLNIQEL--PERIGELCSLKTLCLKGCSMF-ELP------SSILNLENLEVVKCDEE 780 (814)
Q Consensus 723 ~~L~~L~l~~~~~~~~l--p~~l~~l~~L~~L~l~~~~l~-~lp------~~l~~l~~L~~L~l~~~ 780 (814)
+.+..|+++.+ .++.. -+.+.+++.|..|.+.++++. .+. --++.|+++++|+=+..
T Consensus 224 p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGskI 289 (418)
T KOG2982|consen 224 PSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSKI 289 (418)
T ss_pred Ccchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCccc
Confidence 77778888876 34443 246788999999999999865 221 13578999999875533
No 218
>PRK06921 hypothetical protein; Provisional
Probab=96.67 E-value=0.0082 Score=61.52 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=29.0
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEe
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTV 227 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v 227 (814)
....+.++|..|+|||.||.++++ .+.......+++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEH
Confidence 356789999999999999999998 444432233567764
No 219
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.64 E-value=0.0035 Score=60.03 Aligned_cols=38 Identities=21% Similarity=0.511 Sum_probs=26.1
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEe
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTV 227 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v 227 (814)
...-+.++|..|+|||.||.++.+. -+...+. +.|+++
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~-~~~~g~~--v~f~~~ 83 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANE-AIRKGYS--VLFITA 83 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHH-HHHTT----EEEEEH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHH-hccCCcc--eeEeec
Confidence 3467999999999999999999873 2333333 567764
No 220
>PRK06526 transposase; Provisional
Probab=96.60 E-value=0.0056 Score=62.14 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhh
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
..-+.++|++|+|||+||.++..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHH
Confidence 45689999999999999999987
No 221
>PRK09183 transposase/IS protein; Provisional
Probab=96.58 E-value=0.0078 Score=61.49 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhh
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
...+.|+|.+|+|||+||..+..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 35678999999999999999976
No 222
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.58 E-value=0.024 Score=63.06 Aligned_cols=144 Identities=10% Similarity=0.119 Sum_probs=75.4
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcc
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKP 267 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 267 (814)
.+-|.++|++|+|||.+|+++++ .. ....+-++.+. +..... .+....++++++.
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~--e~----~~~~~~l~~~~----------l~~~~v---------Gese~~l~~~f~~ 313 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIAN--DW----QLPLLRLDVGK----------LFGGIV---------GESESRMRQMIRI 313 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHH--Hh----CCCEEEEEhHH----------hccccc---------ChHHHHHHHHHHH
Confidence 45688999999999999999987 32 22122333221 111000 0011233333311
Q ss_pred -cCCCcEEEEEeCCCCCc-------h-----H----HHhhhcccCCCeEEEEEccccc------c---CCCCccccCCCC
Q 003515 268 -IRPEAILLVLDDVWSGS-------E-----S----LLQKFKFQLPYYKILVTSRSVF------P---QFGSGYDLKPLN 321 (814)
Q Consensus 268 -l~~kr~LlVlDdv~~~~-------~-----~----~~~~~~~~~~gs~iivTtR~~~------~---~~~~~~~l~~L~ 321 (814)
-...+++|++|+++... + . ++..+.....+.-||.||.... . .....+.++.-+
T Consensus 314 A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~ 393 (489)
T CHL00195 314 AEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPS 393 (489)
T ss_pred HHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcC
Confidence 14578999999985311 0 0 1222222223345666775541 1 223367888888
Q ss_pred HHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCc
Q 003515 322 DEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGC 358 (814)
Q Consensus 322 ~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 358 (814)
.++-.++|..+........ ........+++.+.|.
T Consensus 394 ~~eR~~Il~~~l~~~~~~~--~~~~dl~~La~~T~Gf 428 (489)
T CHL00195 394 LEEREKIFKIHLQKFRPKS--WKKYDIKKLSKLSNKF 428 (489)
T ss_pred HHHHHHHHHHHHhhcCCCc--ccccCHHHHHhhcCCC
Confidence 8888999987764322110 0112245566666554
No 223
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.54 E-value=0.017 Score=61.01 Aligned_cols=86 Identities=20% Similarity=0.176 Sum_probs=57.1
Q ss_pred CCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEcccccc------CCCCccccCCCCHHHHHHHHHHHcccCCC
Q 003515 269 RPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVFP------QFGSGYDLKPLNDEAARTLFRYSANLQDG 338 (814)
Q Consensus 269 ~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~~------~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~ 338 (814)
.+++-++|+|+++.-... ++..+....+++.+|.+|.+... .-...+.+.+++.++..+.+.... .
T Consensus 130 ~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~ 205 (342)
T PRK06964 130 RGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V 205 (342)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C
Confidence 567778999999766543 56666666667777766665421 112378999999999998887642 1
Q ss_pred CCCCCChHHHHHHHHHcCCchhHHHHH
Q 003515 339 NSYIPDENLVNKILRACKGCPLALTVV 365 (814)
Q Consensus 339 ~~~~~~~~~~~~i~~~~~g~Plai~~~ 365 (814)
. + ...++..++|.|..+..+
T Consensus 206 ---~--~--~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 ---A--D--ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ---C--h--HHHHHHHcCCCHHHHHHH
Confidence 1 1 233577899999755443
No 224
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.54 E-value=0.0018 Score=57.81 Aligned_cols=21 Identities=52% Similarity=0.873 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 003515 190 VIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 190 vi~I~G~gGiGKTtLa~~v~~ 210 (814)
+|+|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 225
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.029 Score=61.44 Aligned_cols=90 Identities=18% Similarity=0.306 Sum_probs=60.0
Q ss_pred CCCCccchhHHHHHHHhh---C---------CcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHH
Q 003515 168 VTPGLDVPLQELKLELFK---D---------GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKG 235 (814)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~---~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~ 235 (814)
++=|.+..+.++.+++.. . ..+=|.+||++|.|||.||++++. ... +-++.++.+
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAg--el~------vPf~~isAp----- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAG--ELG------VPFLSISAP----- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhh--hcC------CceEeecch-----
Confidence 456889998888887762 1 245688999999999999999997 222 334444332
Q ss_pred HHHHHHHHhCCCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCC
Q 003515 236 IVQKVYQHKGYAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWS 282 (814)
Q Consensus 236 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~l~~kr~LlVlDdv~~ 282 (814)
+|+..+.+. ....+++++ +....-++++++|+++.
T Consensus 258 ---eivSGvSGE---------SEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGVSGE---------SEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhcccCcc---------cHHHHHHHHHHHhccCCeEEEeecccc
Confidence 233332221 134566666 44578899999999854
No 226
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.52 E-value=0.023 Score=55.50 Aligned_cols=163 Identities=15% Similarity=0.212 Sum_probs=90.5
Q ss_pred CCCCCccchhHH---HHHHHhhCC------cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHH
Q 003515 167 PVTPGLDVPLQE---LKLELFKDG------RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIV 237 (814)
Q Consensus 167 ~~~vGr~~~~~~---l~~~L~~~~------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~ 237 (814)
+++||.++...+ |++.|.+.+ .+-|..+|++|.|||-+|+++++ +.+.. ++.+.. .++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalan--e~kvp------~l~vka----t~l- 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALAN--EAKVP------LLLVKA----TEL- 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhc--ccCCc------eEEech----HHH-
Confidence 456888776553 456665432 67899999999999999999998 33322 222211 111
Q ss_pred HHHHHHhCCCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCCc------------hHHHhhhcc------cCCCe
Q 003515 238 QKVYQHKGYAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSGS------------ESLLQKFKF------QLPYY 298 (814)
Q Consensus 238 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~l~~kr~LlVlDdv~~~~------------~~~~~~~~~------~~~gs 298 (814)
|-+.. .+...++.++. ..-+.-+|.+++|.++... .+...++.. ...|.
T Consensus 188 --iGehV----------Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGV 255 (368)
T COG1223 188 --IGEHV----------GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGV 255 (368)
T ss_pred --HHHHh----------hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCce
Confidence 11111 22334444444 2225678999999874321 123333322 12354
Q ss_pred EEEEEccccc---cC----CCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCc
Q 003515 299 KILVTSRSVF---PQ----FGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGC 358 (814)
Q Consensus 299 ~iivTtR~~~---~~----~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 358 (814)
..|-.|.... .+ ....++...-+++|-.+++..++..- +.+.+.-.+.++++.+|.
T Consensus 256 vtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~----Plpv~~~~~~~~~~t~g~ 318 (368)
T COG1223 256 VTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKF----PLPVDADLRYLAAKTKGM 318 (368)
T ss_pred EEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhC----CCccccCHHHHHHHhCCC
Confidence 4555554431 11 12245666677888888888877332 122333466677777664
No 227
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.52 E-value=0.00069 Score=66.23 Aligned_cols=214 Identities=14% Similarity=0.063 Sum_probs=134.1
Q ss_pred cCCCCCCcEEEeecc--c----ccCcccc-cccccCCCCCCCEEEecCCCCCCcc-------ccccccccccceeccccc
Q 003515 571 LEKMDKLKVMIVTNY--G----FFPAELS-NIQVFGALSNLKRIRLEHVSLPSLT-------TVRMKHLQNVSLVMCNVD 636 (814)
Q Consensus 571 l~~l~~Lr~L~l~~~--~----~~~~~~~-~l~~l~~l~~L~~L~l~~n~l~~~~-------~~~l~~L~~L~l~~~~~~ 636 (814)
+.+-++|+..++++. | .+++.+. -++.+-+||.|+..+||+|.|..-. ...-..|..|.+.+|++.
T Consensus 54 ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 54 IANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 445566666666651 1 1333332 1245788999999999999986642 234578999999999887
Q ss_pred ccccCccc----cc-----ccCCCCccEEecccCcCcCc----CCccccCCCCccEEEeecCCCCCC-----CchhccCC
Q 003515 637 QVVQNSTF----HF-----SDAFPNLLEIDIDYCNDLIE----LPDGLCDIVSIKKLRITNCHKLSA-----LPEGIGKL 698 (814)
Q Consensus 637 ~~~~~~~~----~~-----~~~l~~L~~L~L~~~~~~~~----lp~~i~~l~~L~~L~l~~~~~~~~-----lp~~~~~l 698 (814)
...+.... .+ ...-|.|++.....|.+..- ....+..-.+|+.+.+..|.+-.. +...+..+
T Consensus 134 p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~ 213 (388)
T COG5238 134 PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYS 213 (388)
T ss_pred ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHh
Confidence 76543321 01 12357899999999875421 112233446899999998764322 11234467
Q ss_pred CCcCEeecccCCCCCC----CccccCCCCCCCEEeccCCCCCCccchhh------cCCCCCCEEeccCCCCC-------C
Q 003515 699 VNLQMLTLASCTDLSA----LPDTIGNLSNLNFLDISECLNIQELPERI------GELCSLKTLCLKGCSMF-------E 761 (814)
Q Consensus 699 ~~L~~L~L~~~~~~~~----lp~~l~~L~~L~~L~l~~~~~~~~lp~~l------~~l~~L~~L~l~~~~l~-------~ 761 (814)
.+|+.|+|.+|++... +...+..++.|+.|.+.+|.....-...+ -..++|+.|....|-.. .
T Consensus 214 ~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~ 293 (388)
T COG5238 214 HSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDIS 293 (388)
T ss_pred CcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeec
Confidence 8999999999886532 33445566789999999996655433222 24678888888888643 1
Q ss_pred cChhh-hcCCCCCEEEcCCchhhh
Q 003515 762 LPSSI-LNLENLEVVKCDEETAYQ 784 (814)
Q Consensus 762 lp~~l-~~l~~L~~L~l~~~~~~~ 784 (814)
+|... .+++.|..|...+|+...
T Consensus 294 l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 294 LNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred hhhhhhcccHHHHHHHHccCcchh
Confidence 23222 356666666666565443
No 228
>PRK04296 thymidine kinase; Provisional
Probab=96.51 E-value=0.007 Score=58.80 Aligned_cols=110 Identities=10% Similarity=0.030 Sum_probs=61.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC--CCChHHHHHHHHHHhc
Q 003515 189 QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPE--FQTDEDAINDLERLLK 266 (814)
Q Consensus 189 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~ 266 (814)
.++.|+|..|.||||+|..... +...+-. +++.+. ..++.......++++++...+. .....+....+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~-~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGM-KVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCC-eEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh---
Confidence 4788999999999999988887 4433322 244442 2222222234455666533222 1122222222222
Q ss_pred ccCCCcEEEEEeCCCCCchH-HHhhhcc-cCCCeEEEEEcccc
Q 003515 267 PIRPEAILLVLDDVWSGSES-LLQKFKF-QLPYYKILVTSRSV 307 (814)
Q Consensus 267 ~l~~kr~LlVlDdv~~~~~~-~~~~~~~-~~~gs~iivTtR~~ 307 (814)
..++.-+||+|.+.--... +.+.+.. ...|..||+|.++.
T Consensus 75 -~~~~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~ 116 (190)
T PRK04296 75 -EGEKIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDT 116 (190)
T ss_pred -hCCCCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 2345568999998554333 3333333 35688999998874
No 229
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.51 E-value=0.022 Score=60.87 Aligned_cols=118 Identities=15% Similarity=0.209 Sum_probs=71.3
Q ss_pred CCCCccchhHHHHHHHhh-CCcE-EEEEEcCCCCCHHHHHHHHhhchhhhccC---------------------CCcEEE
Q 003515 168 VTPGLDVPLQELKLELFK-DGRQ-VIVVSAPGGYGKTTLVKKLCKDDQVLGKF---------------------KDNIFF 224 (814)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~-~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---------------------~~~~~w 224 (814)
.++|-+....++..+..+ .+.+ .+.++|++|+||||+|..+.+ .+-... +. +..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~d-~le 78 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAK--ELLCENPTGLLPCGHCRSCKLIPAGNHPD-FLE 78 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHH--HHhCCCcccCCcccchhhhhHHhhcCCCc-eEE
Confidence 357777888888888873 3344 499999999999999999987 332211 22 334
Q ss_pred EEecCCCC---HHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhcccCCC
Q 003515 225 VTVSQTPN---VKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQLPY 297 (814)
Q Consensus 225 v~v~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~g 297 (814)
+..++... ..+..+++.+..... ...++.-++++|+++....+ +...+......
T Consensus 79 l~~s~~~~~~i~~~~vr~~~~~~~~~-------------------~~~~~~kviiidead~mt~~A~nallk~lEep~~~ 139 (325)
T COG0470 79 LNPSDLRKIDIIVEQVRELAEFLSES-------------------PLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKN 139 (325)
T ss_pred ecccccCCCcchHHHHHHHHHHhccC-------------------CCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCC
Confidence 44444333 222223332222211 11367789999999765543 33333444557
Q ss_pred eEEEEEcccc
Q 003515 298 YKILVTSRSV 307 (814)
Q Consensus 298 s~iivTtR~~ 307 (814)
+.+|++|...
T Consensus 140 ~~~il~~n~~ 149 (325)
T COG0470 140 TRFILITNDP 149 (325)
T ss_pred eEEEEEcCCh
Confidence 8888888754
No 230
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.49 E-value=0.017 Score=65.45 Aligned_cols=44 Identities=23% Similarity=0.332 Sum_probs=37.4
Q ss_pred CCCCCccchhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 167 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
++++|.+..++.+...+......-|.|+|.+|+|||++|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999998877655556678999999999999999986
No 231
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.48 E-value=0.0038 Score=58.69 Aligned_cols=88 Identities=24% Similarity=0.210 Sum_probs=44.4
Q ss_pred cCCCCcCEeecccCCCCCCCccccCCCCCCCEEeccCCCCCCccc--hhhcCCCCCCEEeccCCCCCCcCh----hhhcC
Q 003515 696 GKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELP--ERIGELCSLKTLCLKGCSMFELPS----SILNL 769 (814)
Q Consensus 696 ~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp--~~l~~l~~L~~L~l~~~~l~~lp~----~l~~l 769 (814)
..++.|.+|.|.+|.....-|..-..+++|+.|.+.+|. +..+. ..+..+++|++|.+-+|+++.-.. .+.++
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence 344555555555544332223222233455555555542 22211 124456667777777776653321 35677
Q ss_pred CCCCEEEcCCchhhh
Q 003515 770 ENLEVVKCDEETAYQ 784 (814)
Q Consensus 770 ~~L~~L~l~~~~~~~ 784 (814)
++|+.||....+.+.
T Consensus 140 p~l~~LDF~kVt~~E 154 (233)
T KOG1644|consen 140 PSLRTLDFQKVTRKE 154 (233)
T ss_pred CcceEeehhhhhHHH
Confidence 777777776554443
No 232
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.47 E-value=0.0091 Score=59.18 Aligned_cols=47 Identities=15% Similarity=0.276 Sum_probs=34.7
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHH
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQ 238 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~ 238 (814)
-.++.|+|.+|+|||++|.+++.. .... ..+++|++..+ ++...+.+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~--~~~~-g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVN--AARQ-GKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHhC-CCeEEEEECCC-CCHHHHHH
Confidence 578999999999999999988763 3223 23478999876 66555444
No 233
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.47 E-value=0.019 Score=69.29 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=36.9
Q ss_pred CCCCCccchhHHHHHHHhhC---------CcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 167 PVTPGLDVPLQELKLELFKD---------GRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
..++|.+..++.+...+... ...++.++|+.|+|||++|+.+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~ 617 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE 617 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999888731 135688999999999999999987
No 234
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.46 E-value=0.014 Score=59.10 Aligned_cols=50 Identities=18% Similarity=0.210 Sum_probs=35.7
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccC---CCcEEEEEecCCCCHHHHH
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF---KDNIFFVTVSQTPNVKGIV 237 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~~wv~v~~~~~~~~~~ 237 (814)
-.++.|+|.+|+|||+||.+++........+ ..+++|++..+.++...+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~ 71 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV 71 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH
Confidence 5789999999999999999987532222211 2458899988877765443
No 235
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.44 E-value=0.018 Score=63.64 Aligned_cols=182 Identities=17% Similarity=0.157 Sum_probs=105.9
Q ss_pred CCCCCccchhHHHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHH--
Q 003515 167 PVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQH-- 243 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~-- 243 (814)
+++||-+.-...|...+..+. ..-....|.-|+||||+|+-++.- +. +.. + ...+++..-...++|..-
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~Aka--lN--C~~---~-~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKA--LN--CEN---G-PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHH--hc--CCC---C-CCCCcchhhhhhHhhhcCCc
Confidence 356999888888888888655 445678899999999999988752 11 111 1 111222222222222211
Q ss_pred ---hCCCCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEccccccCC---
Q 003515 244 ---KGYAVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVFPQF--- 311 (814)
Q Consensus 244 ---l~~~~~~~~~~~~~~~~l~~~l--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~~~~--- 311 (814)
+..+.... ..-+.++.+.+-. .-.+++-=+.|+|.|...... ++.-+...-+..+.|+.|++.....
T Consensus 88 ~DviEiDaASn-~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TI 166 (515)
T COG2812 88 IDVIEIDAASN-TGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTI 166 (515)
T ss_pred ccchhhhhhhc-cChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhh
Confidence 00000000 1222233333333 223567779999999766543 3333333445677777777763222
Q ss_pred ---CCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchh
Q 003515 312 ---GSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPL 360 (814)
Q Consensus 312 ---~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Pl 360 (814)
...|.++.++.++-...+...+-..+. .-.++....|++..+|...
T Consensus 167 lSRcq~f~fkri~~~~I~~~L~~i~~~E~I---~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 167 LSRCQRFDFKRLDLEEIAKHLAAILDKEGI---NIEEDALSLIARAAEGSLR 215 (515)
T ss_pred hhccccccccCCCHHHHHHHHHHHHHhcCC---ccCHHHHHHHHHHcCCChh
Confidence 227999999999988888887754443 2246677888888888654
No 236
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.43 E-value=0.0069 Score=61.56 Aligned_cols=75 Identities=25% Similarity=0.336 Sum_probs=48.9
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhc
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLK 266 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 266 (814)
+..-+.++|.+|+|||.||.++.+ ++. ....++.++++ .++..++....... ....++.+.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~--~l~-~~g~sv~f~~~------~el~~~Lk~~~~~~--------~~~~~l~~~l- 165 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGN--ELL-KAGISVLFITA------PDLLSKLKAAFDEG--------RLEEKLLREL- 165 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHH--HHH-HcCCeEEEEEH------HHHHHHHHHHHhcC--------chHHHHHHHh-
Confidence 566789999999999999999999 444 33344667765 45666666665431 1122333323
Q ss_pred ccCCCcEEEEEeCCCC
Q 003515 267 PIRPEAILLVLDDVWS 282 (814)
Q Consensus 267 ~l~~kr~LlVlDdv~~ 282 (814)
.+-=||||||+-.
T Consensus 166 ---~~~dlLIiDDlG~ 178 (254)
T COG1484 166 ---KKVDLLIIDDIGY 178 (254)
T ss_pred ---hcCCEEEEecccC
Confidence 2234899999854
No 237
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.39 E-value=0.0023 Score=62.80 Aligned_cols=59 Identities=19% Similarity=0.168 Sum_probs=26.2
Q ss_pred CCCccEEecccCcCcCcCCccccCCCCccEEEeecC--CCCCCCchhccCCCCcCEeecccCC
Q 003515 650 FPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNC--HKLSALPEGIGKLVNLQMLTLASCT 710 (814)
Q Consensus 650 l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~--~~~~~lp~~~~~l~~L~~L~L~~~~ 710 (814)
+..|+.|++.++.+++. ..+..|++|++|.++.| ...+.++....++++|++|++++|.
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 44444444444432211 11233445555555555 3333344334444555555555543
No 238
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.38 E-value=0.0044 Score=58.30 Aligned_cols=79 Identities=10% Similarity=0.188 Sum_probs=40.7
Q ss_pred CCcEEEeecccccCcccccccccCCCCCCCEEEecCCCCCCcc---ccccccccccceecccccccccCcccccccCCCC
Q 003515 576 KLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSLT---TVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPN 652 (814)
Q Consensus 576 ~Lr~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 652 (814)
..-.+++++|.. ..+..|..++.|.+|.+++|.++.+. ...+++|..|.+.+|++..+-...+. ..+|.
T Consensus 43 ~~d~iDLtdNdl-----~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL---a~~p~ 114 (233)
T KOG1644|consen 43 QFDAIDLTDNDL-----RKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPL---ASCPK 114 (233)
T ss_pred ccceecccccch-----hhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchh---ccCCc
Confidence 344555555432 22233566677777777777776652 22345566666666655444322211 13445
Q ss_pred ccEEecccCc
Q 003515 653 LLEIDIDYCN 662 (814)
Q Consensus 653 L~~L~L~~~~ 662 (814)
|++|.+-+|+
T Consensus 115 L~~Ltll~Np 124 (233)
T KOG1644|consen 115 LEYLTLLGNP 124 (233)
T ss_pred cceeeecCCc
Confidence 5555555544
No 239
>PHA02244 ATPase-like protein
Probab=96.37 E-value=0.026 Score=59.39 Aligned_cols=46 Identities=7% Similarity=0.159 Sum_probs=30.1
Q ss_pred CCCCCCCCCccchhH----HHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 163 PDPPPVTPGLDVPLQ----ELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 163 ~~~~~~~vGr~~~~~----~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
..-+..++|...... .+..++. .+ .-|.|+|++|+|||+||+++++
T Consensus 92 ~~~d~~~ig~sp~~~~~~~ri~r~l~-~~-~PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 92 SGIDTTKIASNPTFHYETADIAKIVN-AN-IPVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred hhCCCcccCCCHHHHHHHHHHHHHHh-cC-CCEEEECCCCCCHHHHHHHHHH
Confidence 333445567555543 3333333 22 3467899999999999999987
No 240
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.019 Score=63.97 Aligned_cols=152 Identities=16% Similarity=0.139 Sum_probs=79.8
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHh-c
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL-K 266 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~ 266 (814)
..-|.|.|..|+|||+||+++++. ....-.+.+.+++++.-... ..+.....+...+ +
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~--~~k~~~~hv~~v~Cs~l~~~-------------------~~e~iQk~l~~vfse 489 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDY--YSKDLIAHVEIVSCSTLDGS-------------------SLEKIQKFLNNVFSE 489 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHH--hccccceEEEEEechhccch-------------------hHHHHHHHHHHHHHH
Confidence 456889999999999999999983 33333333556666432110 1122222333333 4
Q ss_pred ccCCCcEEEEEeCCCCCc--------h-----HHHhhhc-----c-cCCCe--EEEEEccccc------cC---CCCccc
Q 003515 267 PIRPEAILLVLDDVWSGS--------E-----SLLQKFK-----F-QLPYY--KILVTSRSVF------PQ---FGSGYD 316 (814)
Q Consensus 267 ~l~~kr~LlVlDdv~~~~--------~-----~~~~~~~-----~-~~~gs--~iivTtR~~~------~~---~~~~~~ 316 (814)
.+.-.+-+|||||++... + ..+..+. . ...+. .+|.|..... .. ......
T Consensus 490 ~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~ 569 (952)
T KOG0735|consen 490 ALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIA 569 (952)
T ss_pred HHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEe
Confidence 456788999999984211 0 1111111 1 12233 3444544331 11 122577
Q ss_pred cCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCc-hhHHH
Q 003515 317 LKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGC-PLALT 363 (814)
Q Consensus 317 l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~ 363 (814)
+..+...+-.++++........ ........-+..+|+|. |.-++
T Consensus 570 L~ap~~~~R~~IL~~~~s~~~~---~~~~~dLd~ls~~TEGy~~~DL~ 614 (952)
T KOG0735|consen 570 LPAPAVTRRKEILTTIFSKNLS---DITMDDLDFLSVKTEGYLATDLV 614 (952)
T ss_pred cCCcchhHHHHHHHHHHHhhhh---hhhhHHHHHHHHhcCCccchhHH
Confidence 8888887777776654322211 11233334477888774 43333
No 241
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.36 E-value=0.016 Score=59.68 Aligned_cols=134 Identities=14% Similarity=0.157 Sum_probs=70.5
Q ss_pred CccchhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhc-hhhhccCCCcEEEE----EecCCC---------CHHHH
Q 003515 171 GLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKD-DQVLGKFKDNIFFV----TVSQTP---------NVKGI 236 (814)
Q Consensus 171 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~~wv----~v~~~~---------~~~~~ 236 (814)
+|..+..--+++|++++...|.+.|.+|.|||.||-+..=. ...+..|.. ++-. .+++.. ...-.
T Consensus 228 prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~K-iiVtRp~vpvG~dIGfLPG~eEeKm~PW 306 (436)
T COG1875 228 PRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRK-IIVTRPTVPVGEDIGFLPGTEEEKMGPW 306 (436)
T ss_pred cccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhce-EEEecCCcCcccccCcCCCchhhhccch
Confidence 35555555568888999999999999999999888654322 122444543 3211 122211 11122
Q ss_pred HHHHHHHhCCCCCCCCChHHHHHHH-HH-H-----hcccCCC---cEEEEEeCCCCCchHH-HhhhcccCCCeEEEEEcc
Q 003515 237 VQKVYQHKGYAVPEFQTDEDAINDL-ER-L-----LKPIRPE---AILLVLDDVWSGSESL-LQKFKFQLPYYKILVTSR 305 (814)
Q Consensus 237 ~~~i~~~l~~~~~~~~~~~~~~~~l-~~-~-----l~~l~~k---r~LlVlDdv~~~~~~~-~~~~~~~~~gs~iivTtR 305 (814)
...|..-+..-...........+.+ .+ . +.+++|+ .-+||+|.+.+..... ..-+--.++||||+.|--
T Consensus 307 mq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTiltR~G~GsKIVl~gd 386 (436)
T COG1875 307 MQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILTRAGEGSKIVLTGD 386 (436)
T ss_pred HHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHHhccCCCEEEEcCC
Confidence 3333322211111100111122111 11 1 1233554 4589999998776543 333445678999998864
No 242
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.33 E-value=0.0039 Score=56.45 Aligned_cols=35 Identities=34% Similarity=0.478 Sum_probs=26.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhhchhhhcc-CCCcEEEE
Q 003515 189 QVIVVSAPGGYGKTTLVKKLCKDDQVLGK-FKDNIFFV 225 (814)
Q Consensus 189 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~~wv 225 (814)
.-|+|.|++|+||||+++.+.+ .++.. |..+=||.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e--~L~~~g~kvgGf~t 41 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAE--KLREKGYKVGGFIT 41 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHH--HHHhcCceeeeEEe
Confidence 4589999999999999999998 55444 65544444
No 243
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.29 E-value=0.018 Score=60.96 Aligned_cols=57 Identities=18% Similarity=0.283 Sum_probs=40.3
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhcc---CCCcEEEEEecCCCCHHHHHHHHHHHhC
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGK---FKDNIFFVTVSQTPNVKGIVQKVYQHKG 245 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F~~~~~wv~v~~~~~~~~~~~~i~~~l~ 245 (814)
..++-|+|.+|+|||+++.+++........ -...++|++..+.++.+.+. ++++.++
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 578899999999999999988763222111 12258899998888887654 3445544
No 244
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.29 E-value=0.015 Score=69.23 Aligned_cols=43 Identities=21% Similarity=0.289 Sum_probs=35.1
Q ss_pred CCCCccchhHHHHHHHhh-------------CCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 168 VTPGLDVPLQELKLELFK-------------DGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
++.|.+..+++|.+++.. ...+-|.++|++|+|||+||+.+++
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 467999999888877641 1245688999999999999999987
No 245
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.28 E-value=0.017 Score=58.08 Aligned_cols=45 Identities=13% Similarity=0.306 Sum_probs=33.3
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHH
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGI 236 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~ 236 (814)
-.++.|+|.+|+|||++|.+++.. .... ...++|++.. .++.+.+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~--~~~~-~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVE--AAKN-GKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHC-CCeEEEEECC-CCCHHHH
Confidence 579999999999999999998863 3222 2347799987 5555443
No 246
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.28 E-value=0.028 Score=58.78 Aligned_cols=114 Identities=13% Similarity=0.065 Sum_probs=64.1
Q ss_pred CccchhHHHHHHHhh----CCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCC
Q 003515 171 GLDVPLQELKLELFK----DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGY 246 (814)
Q Consensus 171 Gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~ 246 (814)
+|....+...+++.. ...+-+.++|..|+|||.||.++++.. ....+. +.+++++ +++..+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l-~~~g~~--v~~~~~~------~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANEL-AKKGVS--STLLHFP------EFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHH-HHcCCC--EEEEEHH------HHHHHHHHHHhc
Confidence 344444444455542 134578999999999999999999832 233333 5577653 566666655432
Q ss_pred CCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc--hH----HHhhhcc-c-CCCeEEEEEccc
Q 003515 247 AVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGS--ES----LLQKFKF-Q-LPYYKILVTSRS 306 (814)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~--~~----~~~~~~~-~-~~gs~iivTtR~ 306 (814)
. .. ...+.. + .+-=||||||+-... +| ++..+.. . ..+-.+|+||.-
T Consensus 206 ~-----~~---~~~l~~-l----~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 206 G-----SV---KEKIDA-V----KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred C-----cH---HHHHHH-h----cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1 11 112222 2 245589999995432 23 2222211 1 245678888863
No 247
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.26 E-value=0.033 Score=58.78 Aligned_cols=82 Identities=18% Similarity=0.138 Sum_probs=48.8
Q ss_pred CCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEccccccCC------CCccccCCCCHHHHHHHHHHHcccCCC
Q 003515 269 RPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVFPQF------GSGYDLKPLNDEAARTLFRYSANLQDG 338 (814)
Q Consensus 269 ~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~~~~------~~~~~l~~L~~~~~~~Lf~~~a~~~~~ 338 (814)
.+++-++|+|++..-+.. ++..+....+++.+|++|.+..... ...+.+.+++.+++.+.+.... .
T Consensus 111 ~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~ 186 (325)
T PRK08699 111 RGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----V 186 (325)
T ss_pred cCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----C
Confidence 355556677888665533 4444444445677777777653211 2278899999999888776531 1
Q ss_pred CCCCCChHHHHHHHHHcCCchhH
Q 003515 339 NSYIPDENLVNKILRACKGCPLA 361 (814)
Q Consensus 339 ~~~~~~~~~~~~i~~~~~g~Pla 361 (814)
. ... ..+..++|.|+.
T Consensus 187 ---~-~~~---~~l~~~~g~p~~ 202 (325)
T PRK08699 187 ---A-EPE---ERLAFHSGAPLF 202 (325)
T ss_pred ---C-cHH---HHHHHhCCChhh
Confidence 1 111 123568899964
No 248
>PRK06696 uridine kinase; Validated
Probab=96.23 E-value=0.005 Score=61.63 Aligned_cols=39 Identities=18% Similarity=0.235 Sum_probs=32.8
Q ss_pred ccchhHHHHHHHh---hCCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 172 LDVPLQELKLELF---KDGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 172 r~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
|++-+++|.+.+. .+...+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 5667778887776 34578999999999999999999987
No 249
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.23 E-value=0.02 Score=57.50 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=35.1
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccC-----CCcEEEEEecCCCCHHHHH
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF-----KDNIFFVTVSQTPNVKGIV 237 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-----~~~~~wv~v~~~~~~~~~~ 237 (814)
-.++.|+|.+|+|||+||.+++.. ....- +.+++|++....++...+.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 578999999999999999988752 22222 1457899988777765543
No 250
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.20 E-value=0.017 Score=68.53 Aligned_cols=106 Identities=18% Similarity=0.221 Sum_probs=61.1
Q ss_pred CCCCCccchhHHHHHHHhhC---------CcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHH
Q 003515 167 PVTPGLDVPLQELKLELFKD---------GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIV 237 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~ 237 (814)
..++|.+..++.+.+.+... ...++.++|+.|+|||+||+.+++ .. ....+.++.++..+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~--~l----~~~~~~~d~se~~~~~~-- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE--AL----GVHLERFDMSEYMEKHT-- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH--Hh----cCCeEEEeCchhhhccc--
Confidence 46789888888888877621 134678999999999999999987 33 22245666655332211
Q ss_pred HHHHHHhCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH
Q 003515 238 QKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES 286 (814)
Q Consensus 238 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~~~ 286 (814)
+...++.. +..... +....+.+.++ +....+|+||+++....+
T Consensus 526 --~~~lig~~-~gyvg~-~~~~~l~~~~~--~~p~~VvllDEieka~~~ 568 (731)
T TIGR02639 526 --VSRLIGAP-PGYVGF-EQGGLLTEAVR--KHPHCVLLLDEIEKAHPD 568 (731)
T ss_pred --HHHHhcCC-CCCccc-chhhHHHHHHH--hCCCeEEEEechhhcCHH
Confidence 11122211 111111 11122333332 234569999999766644
No 251
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.061 Score=57.97 Aligned_cols=139 Identities=17% Similarity=0.235 Sum_probs=76.0
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHh-c
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL-K 266 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~ 266 (814)
...+.+.|++|+|||+||..++. .+.|+. + .+-. ++++ +|. +.......+...+ .
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPF-v---KiiS---pe~m-------iG~------sEsaKc~~i~k~F~D 593 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIAL----SSDFPF-V---KIIS---PEDM-------IGL------SESAKCAHIKKIFED 593 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHh----hcCCCe-E---EEeC---hHHc-------cCc------cHHHHHHHHHHHHHH
Confidence 56678999999999999999975 466875 3 2211 1110 111 1222233444444 4
Q ss_pred ccCCCcEEEEEeCCCCCchH----------HHhhh----cccCC-CeEE-EEEcccc-c--------cCCCCccccCCCC
Q 003515 267 PIRPEAILLVLDDVWSGSES----------LLQKF----KFQLP-YYKI-LVTSRSV-F--------PQFGSGYDLKPLN 321 (814)
Q Consensus 267 ~l~~kr~LlVlDdv~~~~~~----------~~~~~----~~~~~-gs~i-ivTtR~~-~--------~~~~~~~~l~~L~ 321 (814)
..+..--.||+||+....++ .++.+ ....| |-|. |++|.++ . ...+..|.++.++
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 44677789999998543322 22222 22222 4343 3333333 1 2233478888888
Q ss_pred H-HHHHHHHHHHc-ccCCCCCCCCChHHHHHHHHHc
Q 003515 322 D-EAARTLFRYSA-NLQDGNSYIPDENLVNKILRAC 355 (814)
Q Consensus 322 ~-~~~~~Lf~~~a-~~~~~~~~~~~~~~~~~i~~~~ 355 (814)
. ++..+.+...- |.+ ...+.++++...+|
T Consensus 674 ~~~~~~~vl~~~n~fsd-----~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELNIFSD-----DEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHccCCCc-----chhHHHHHHHhccc
Confidence 7 66667666543 222 22355666666666
No 252
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.17 E-value=0.019 Score=64.24 Aligned_cols=75 Identities=19% Similarity=0.352 Sum_probs=55.4
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcc
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKP 267 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 267 (814)
-+++.++|++|+||||||.-++++ ..|. ++=|++|+..+...+-..|...+..... + .
T Consensus 326 kKilLL~GppGlGKTTLAHViAkq----aGYs--VvEINASDeRt~~~v~~kI~~avq~~s~---------------l-~ 383 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQ----AGYS--VVEINASDERTAPMVKEKIENAVQNHSV---------------L-D 383 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHh----cCce--EEEecccccccHHHHHHHHHHHHhhccc---------------c-c
Confidence 579999999999999999999872 3343 6688999988888877777666542210 0 0
Q ss_pred cCCCcEEEEEeCCCCCc
Q 003515 268 IRPEAILLVLDDVWSGS 284 (814)
Q Consensus 268 l~~kr~LlVlDdv~~~~ 284 (814)
..+++.-||+|.++...
T Consensus 384 adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 384 ADSRPVCLVIDEIDGAP 400 (877)
T ss_pred cCCCcceEEEecccCCc
Confidence 03788889999997655
No 253
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.16 E-value=0.024 Score=59.38 Aligned_cols=59 Identities=20% Similarity=0.219 Sum_probs=42.4
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhh---ccCCCcEEEEEecCCCCHHHHHHHHHHHhCCC
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVL---GKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYA 247 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 247 (814)
-.++-|+|.+|+|||+|+.+++-..... ..-...++|++..+.++.+.+.+ +++.++.+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d 157 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVD 157 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 5788899999999999998876422222 12234688999999888888654 56666543
No 254
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.15 E-value=0.067 Score=63.77 Aligned_cols=164 Identities=13% Similarity=0.189 Sum_probs=88.2
Q ss_pred CCCCCccchhHHHHHHHhh-------------CCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCH
Q 003515 167 PVTPGLDVPLQELKLELFK-------------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNV 233 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~ 233 (814)
..+.|.+..+++|.+.+.. ...+-|.++|++|+|||++|+++++ ..... .+.+..+
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~--e~~~~----fi~v~~~----- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVAT--ESGAN----FIAVRGP----- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hcCCC----EEEEehH-----
Confidence 3457777777777665531 1244588999999999999999998 33222 2233221
Q ss_pred HHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhc-ccCCCcEEEEEeCCCCCc------------hHHHh----hhcc--c
Q 003515 234 KGIVQKVYQHKGYAVPEFQTDEDAINDLERLLK-PIRPEAILLVLDDVWSGS------------ESLLQ----KFKF--Q 294 (814)
Q Consensus 234 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~l~~kr~LlVlDdv~~~~------------~~~~~----~~~~--~ 294 (814)
+ ++...-+ +....++.++. .-+..+++|+||+++... +.... .+.. .
T Consensus 522 -~----l~~~~vG---------ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~ 587 (733)
T TIGR01243 522 -E----ILSKWVG---------ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQE 587 (733)
T ss_pred -H----HhhcccC---------cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccC
Confidence 1 1111110 11123344442 224667999999984310 11222 2221 1
Q ss_pred CCCeEEEEEccccc------c---CCCCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCch
Q 003515 295 LPYYKILVTSRSVF------P---QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCP 359 (814)
Q Consensus 295 ~~gs~iivTtR~~~------~---~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P 359 (814)
..+.-||.||.... . .....+.++..+.++-.++|+.+....... ...-...+++.+.|.-
T Consensus 588 ~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~----~~~~l~~la~~t~g~s 657 (733)
T TIGR01243 588 LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLA----EDVDLEELAEMTEGYT 657 (733)
T ss_pred CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCC----ccCCHHHHHHHcCCCC
Confidence 22445666665431 1 233467888889999899987654322111 1112466777777653
No 255
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.47 Score=50.83 Aligned_cols=146 Identities=16% Similarity=0.199 Sum_probs=77.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhccc
Q 003515 189 QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPI 268 (814)
Q Consensus 189 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~l 268 (814)
|=-.++|++|.|||+++.++++ +++..|+=...+...+-.+ ++.++..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn------~L~ydIydLeLt~v~~n~d-Lr~LL~~------------------------- 283 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMAN------YLNYDIYDLELTEVKLDSD-LRHLLLA------------------------- 283 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHh------hcCCceEEeeeccccCcHH-HHHHHHh-------------------------
Confidence 4467899999999999999987 2333354555544333333 3333322
Q ss_pred CCCcEEEEEeCCCCCc-------------h---------HHHhhh---cccCCCeEEE-EEccccc------cC---CCC
Q 003515 269 RPEAILLVLDDVWSGS-------------E---------SLLQKF---KFQLPYYKIL-VTSRSVF------PQ---FGS 313 (814)
Q Consensus 269 ~~kr~LlVlDdv~~~~-------------~---------~~~~~~---~~~~~gs~ii-vTtR~~~------~~---~~~ 313 (814)
...+-+||+.|++-.- + -++..+ .....+-||| +||.... .. +..
T Consensus 284 t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDm 363 (457)
T KOG0743|consen 284 TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDM 363 (457)
T ss_pred CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCccee
Confidence 2344455555553210 0 011111 1112223555 4555431 11 233
Q ss_pred ccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHHHHH-HhCCC
Q 003515 314 GYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGG-SLCGK 372 (814)
Q Consensus 314 ~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~-~L~~~ 372 (814)
.+.+.--+.+....||.++...+. ...+..+|.+...|.-+.=..++. ++..+
T Consensus 364 hI~mgyCtf~~fK~La~nYL~~~~------~h~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 364 HIYMGYCTFEAFKTLASNYLGIEE------DHRLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred EEEcCCCCHHHHHHHHHHhcCCCC------CcchhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 688999999999999998874432 123455555554554443333333 33444
No 256
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.10 E-value=0.11 Score=50.67 Aligned_cols=52 Identities=19% Similarity=0.125 Sum_probs=39.5
Q ss_pred CCCCCccchhHHHHHHHh----hCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCC
Q 003515 167 PVTPGLDVPLQELKLELF----KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKD 220 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 220 (814)
..++|.+...+.+++--. .-...-|.+||.-|+||++|++++.+ .+......
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr 115 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR 115 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe
Confidence 456899988888765433 33355688999999999999999998 66665544
No 257
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.07 E-value=0.02 Score=54.91 Aligned_cols=36 Identities=28% Similarity=0.502 Sum_probs=28.3
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEE
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFV 225 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv 225 (814)
...+|.+.|+.|+||||+|+.+++ +....+.. +.++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~-~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSN-VIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCc-EEEE
Confidence 356899999999999999999997 66655555 4444
No 258
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.07 E-value=0.0054 Score=67.73 Aligned_cols=43 Identities=19% Similarity=0.364 Sum_probs=38.3
Q ss_pred CCCCccchhHHHHHHHh------hCCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 168 VTPGLDVPLQELKLELF------KDGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 168 ~~vGr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
+++|.++.+++|++.|. ....+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 47999999999999993 44568999999999999999999986
No 259
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.07 E-value=0.021 Score=57.02 Aligned_cols=42 Identities=21% Similarity=0.381 Sum_probs=31.1
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCC
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPN 232 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~ 232 (814)
-.++.|.|.+|+||||+|.+++. ..... ...++|++....+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~--~~~~~-g~~v~yi~~e~~~~ 60 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAV--ETAGQ-GKKVAYIDTEGLSS 60 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHhc-CCeEEEEECCCCCH
Confidence 57899999999999999999886 33222 33477888765554
No 260
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.0071 Score=64.91 Aligned_cols=44 Identities=25% Similarity=0.348 Sum_probs=33.8
Q ss_pred CCCCccc---hhHHHHHHHhhCC---------cEEEEEEcCCCCCHHHHHHHHhhc
Q 003515 168 VTPGLDV---PLQELKLELFKDG---------RQVIVVSAPGGYGKTTLVKKLCKD 211 (814)
Q Consensus 168 ~~vGr~~---~~~~l~~~L~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~ 211 (814)
++-|.|+ |+++|+++|.++. ++=|.++|++|.|||-||++|+-.
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 3457666 4667778887432 466889999999999999999874
No 261
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.05 E-value=0.013 Score=53.59 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=31.5
Q ss_pred CCccchhHHHHHHHh--hCCcEEEEEEcCCCCCHHHHHHHHhhc
Q 003515 170 PGLDVPLQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCKD 211 (814)
Q Consensus 170 vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~ 211 (814)
||.-..++++.+.+. ......|.|+|..|+||+++|+.++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 577777777777776 344567789999999999999999873
No 262
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.04 E-value=0.026 Score=61.74 Aligned_cols=90 Identities=19% Similarity=0.223 Sum_probs=49.4
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCC-CCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHh
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQT-PNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL 265 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 265 (814)
...+|.++|.+|+||||+|..++. ..... ..++..+++... ....+.+..+.+.++.+........+....+.+.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~--~L~~~-g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR--YFKKK-GLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHHc-CCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 367999999999999999998886 33332 223555555321 12344455666666543222111122223333444
Q ss_pred cccCCCcEEEEEeCC
Q 003515 266 KPIRPEAILLVLDDV 280 (814)
Q Consensus 266 ~~l~~kr~LlVlDdv 280 (814)
+...+. =+||+|..
T Consensus 171 ~~~~~~-DvVIIDTA 184 (437)
T PRK00771 171 EKFKKA-DVIIVDTA 184 (437)
T ss_pred HHhhcC-CEEEEECC
Confidence 333333 46778876
No 263
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.03 E-value=0.019 Score=59.86 Aligned_cols=84 Identities=20% Similarity=0.262 Sum_probs=51.9
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-----CCCChHHHHHHHH
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVP-----EFQTDEDAINDLE 262 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 262 (814)
-+++-|+|.+|+||||||.++... .... ...++|++..+.++.. .+++++.+.. .....++....+.
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~--~~~~-g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAE--AQKA-GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHc-CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 578999999999999999887763 3222 3447799887766653 3444443211 1123334444444
Q ss_pred HHhcccCCCcEEEEEeCCC
Q 003515 263 RLLKPIRPEAILLVLDDVW 281 (814)
Q Consensus 263 ~~l~~l~~kr~LlVlDdv~ 281 (814)
.+++ .+..-+||+|.|-
T Consensus 127 ~li~--~~~~~lIVIDSv~ 143 (321)
T TIGR02012 127 TLVR--SGAVDIIVVDSVA 143 (321)
T ss_pred HHhh--ccCCcEEEEcchh
Confidence 4332 3566799999873
No 264
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.92 E-value=0.04 Score=53.81 Aligned_cols=110 Identities=19% Similarity=0.301 Sum_probs=55.9
Q ss_pred HHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHH
Q 003515 177 QELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDED 256 (814)
Q Consensus 177 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 256 (814)
.+.+..+..++-+++.|.|.+|.||||+++.+.. ..... ...++++.. .. .....+.+..+...
T Consensus 7 ~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~--~~~~~-g~~v~~~ap-T~----~Aa~~L~~~~~~~a-------- 70 (196)
T PF13604_consen 7 REAVRAILTSGDRVSVLQGPAGTGKTTLLKALAE--ALEAA-GKRVIGLAP-TN----KAAKELREKTGIEA-------- 70 (196)
T ss_dssp HHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHH--HHHHT-T--EEEEES-SH----HHHHHHHHHHTS-E--------
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHH--HHHhC-CCeEEEECC-cH----HHHHHHHHhhCcch--------
Confidence 4444555555667899999999999999998876 33332 223434432 21 22222333333211
Q ss_pred HHHHHHHHhccc----------CCCcEEEEEeCCCCCchHHHhhhcc-c-CCCeEEEEEc
Q 003515 257 AINDLERLLKPI----------RPEAILLVLDDVWSGSESLLQKFKF-Q-LPYYKILVTS 304 (814)
Q Consensus 257 ~~~~l~~~l~~l----------~~kr~LlVlDdv~~~~~~~~~~~~~-~-~~gs~iivTt 304 (814)
..+..++... ..+.-+||+|++...+...+..+.. . ..|+++|+.=
T Consensus 71 --~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~~~~klilvG 128 (196)
T PF13604_consen 71 --QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKKSGAKLILVG 128 (196)
T ss_dssp --EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T-T-EEEEEE
T ss_pred --hhHHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHhcCCEEEEEC
Confidence 0122222000 1334599999998766554444332 2 2367777653
No 265
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.90 E-value=0.0012 Score=68.57 Aligned_cols=205 Identities=15% Similarity=0.257 Sum_probs=126.9
Q ss_pred hhcCCCCCCcEEEeecccccCccccccc-ccCCCCCCCEEEecCCC-CCCc----cccccccccccceecccccccccCc
Q 003515 569 KFLEKMDKLKVMIVTNYGFFPAELSNIQ-VFGALSNLKRIRLEHVS-LPSL----TTVRMKHLQNVSLVMCNVDQVVQNS 642 (814)
Q Consensus 569 ~~l~~l~~Lr~L~l~~~~~~~~~~~~l~-~l~~l~~L~~L~l~~n~-l~~~----~~~~l~~L~~L~l~~~~~~~~~~~~ 642 (814)
.....+++|+.+.+.+|...+.+. +. .-+.+..+..+++..+. ++.. ....+..|++|..+++.. .....
T Consensus 236 ~~~rG~~~l~~~~~kGC~e~~le~--l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~--~~d~~ 311 (483)
T KOG4341|consen 236 ALQRGCKELEKLSLKGCLELELEA--LLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTD--ITDEV 311 (483)
T ss_pred HHhccchhhhhhhhcccccccHHH--HHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCC--CchHH
Confidence 344555566666555543322221 10 01233445555554442 3332 233467888888888754 22233
Q ss_pred ccccccCCCCccEEecccCcCcCcC-Cccc-cCCCCccEEEeecCCCCCC--CchhccCCCCcCEeecccCCCCCCC---
Q 003515 643 TFHFSDAFPNLLEIDIDYCNDLIEL-PDGL-CDIVSIKKLRITNCHKLSA--LPEGIGKLVNLQMLTLASCTDLSAL--- 715 (814)
Q Consensus 643 ~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i-~~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~L~L~~~~~~~~l--- 715 (814)
...+..+.++|++|.+.+|+..+.. -..+ .+.++|+.+++.+|..+.. +-+--.+.+.|+.|.++.|......
T Consensus 312 l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~ 391 (483)
T KOG4341|consen 312 LWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIR 391 (483)
T ss_pred HHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhh
Confidence 3345557899999999999754321 1112 4678899999998865443 2222346789999999988765433
Q ss_pred --ccccCCCCCCCEEeccCCCCCCc-cchhhcCCCCCCEEeccCCC-CC--CcChhhhcCCCCCEEEc
Q 003515 716 --PDTIGNLSNLNFLDISECLNIQE-LPERIGELCSLKTLCLKGCS-MF--ELPSSILNLENLEVVKC 777 (814)
Q Consensus 716 --p~~l~~L~~L~~L~l~~~~~~~~-lp~~l~~l~~L~~L~l~~~~-l~--~lp~~l~~l~~L~~L~l 777 (814)
...-..+..|..|.+++|+.+.. .-+.+..+++|+.+++.+|. ++ .+-..-.+++++++.-.
T Consensus 392 ~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 392 HLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred hhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 33345567899999999987653 33456788999999999998 55 44445578888877643
No 266
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.87 E-value=0.038 Score=55.58 Aligned_cols=48 Identities=21% Similarity=0.378 Sum_probs=32.1
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHh
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHK 244 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l 244 (814)
...+.++|.+|+|||+||.++++. ....- ..+++++ ..++...+....
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g-~~v~~it------~~~l~~~l~~~~ 146 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRG-KSVLIIT------VADIMSAMKDTF 146 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcC-CeEEEEE------HHHHHHHHHHHH
Confidence 357899999999999999999983 33322 2355664 345555554443
No 267
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.87 E-value=0.018 Score=55.06 Aligned_cols=35 Identities=31% Similarity=0.411 Sum_probs=25.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEe
Q 003515 190 VIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTV 227 (814)
Q Consensus 190 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v 227 (814)
++.++|++|+||||++..++. ..... ..++..++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~--~~~~~-g~~v~~i~~ 36 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL--YLKKK-GKKVLLVAA 36 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHC-CCcEEEEEc
Confidence 678999999999999999886 33332 223545554
No 268
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.85 E-value=0.0066 Score=59.68 Aligned_cols=107 Identities=25% Similarity=0.249 Sum_probs=71.0
Q ss_pred CCccccCCCCccEEEeecCCCCCCCchhccCCCCcCEeecccC--CCCCCCccccCCCCCCCEEeccCCCCC--Cccchh
Q 003515 667 LPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASC--TDLSALPDTIGNLSNLNFLDISECLNI--QELPER 742 (814)
Q Consensus 667 lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~--~~~~~lp~~l~~L~~L~~L~l~~~~~~--~~lp~~ 742 (814)
+....-.+..|+.|++.++..+.. ..+-.|++|++|.++.| ...+.++.....+++|++|++++|... ..++ .
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-P 111 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-h
Confidence 333344556677777776543321 12345889999999998 556677777777899999999998542 1222 3
Q ss_pred hcCCCCCCEEeccCCCCCCcCh----hhhcCCCCCEEE
Q 003515 743 IGELCSLKTLCLKGCSMFELPS----SILNLENLEVVK 776 (814)
Q Consensus 743 l~~l~~L~~L~l~~~~l~~lp~----~l~~l~~L~~L~ 776 (814)
+..+.+|..|++++|..+.+.. .+.-+++|+.|+
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 5677888899999998664432 334566666664
No 269
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.85 E-value=0.04 Score=58.32 Aligned_cols=59 Identities=22% Similarity=0.258 Sum_probs=42.8
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhh---ccCCCcEEEEEecCCCCHHHHHHHHHHHhCCC
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVL---GKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYA 247 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 247 (814)
..++-|+|.+|+|||+|+..++-..... .....+++|++....|+++++.. +++.++.+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 5688899999999999998886432222 22234688999999999888655 55666543
No 270
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.099 Score=50.77 Aligned_cols=144 Identities=21% Similarity=0.316 Sum_probs=79.7
Q ss_pred CCCCCCC-ccchhHHHHHHHh-------------hCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCC
Q 003515 165 PPPVTPG-LDVPLQELKLELF-------------KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQT 230 (814)
Q Consensus 165 ~~~~~vG-r~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~ 230 (814)
....+|| .+.++++|.+.+. -.+++=+.++|++|.|||-||++|+++ .+ +.++.||..
T Consensus 144 StYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~-c~firvsgs 215 (404)
T KOG0728|consen 144 STYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TD-CTFIRVSGS 215 (404)
T ss_pred cHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cc-eEEEEechH
Confidence 3344554 5677777776654 123566889999999999999999972 33 457787653
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCCc----------h--------HHHhhh
Q 003515 231 PNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSGS----------E--------SLLQKF 291 (814)
Q Consensus 231 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~l~~kr~LlVlDdv~~~~----------~--------~~~~~~ 291 (814)
++.++.+ + +....+++++ -.-..-+..|+.|.+++.. + +++..+
T Consensus 216 ----elvqk~i---g----------egsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnql 278 (404)
T KOG0728|consen 216 ----ELVQKYI---G----------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQL 278 (404)
T ss_pred ----HHHHHHh---h----------hhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhc
Confidence 2222111 1 1112233333 1113456778888774321 1 123333
Q ss_pred cc--cCCCeEEEEEccccc------cCCC---CccccCCCCHHHHHHHHHHHc
Q 003515 292 KF--QLPYYKILVTSRSVF------PQFG---SGYDLKPLNDEAARTLFRYSA 333 (814)
Q Consensus 292 ~~--~~~gs~iivTtR~~~------~~~~---~~~~l~~L~~~~~~~Lf~~~a 333 (814)
.. ..++-+||..|..-. ...| ..++.++-+++.-.++++-+.
T Consensus 279 dgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 279 DGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 21 234677877664331 1122 256777777776677776554
No 271
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.22 Score=51.93 Aligned_cols=43 Identities=26% Similarity=0.302 Sum_probs=30.4
Q ss_pred CCCCccchhHHHHHHHhh------------CCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 168 VTPGLDVPLQELKLELFK------------DGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
++.|.++.++-|.+.+.- ..-+-|..+|++|.|||-||++|+.
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvAT 267 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVAT 267 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHH
Confidence 445666555555554431 1235688999999999999999997
No 272
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.1 Score=59.88 Aligned_cols=167 Identities=14% Similarity=0.140 Sum_probs=93.0
Q ss_pred CCCCCccchhHHHHH---HHhhCC---------cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHH
Q 003515 167 PVTPGLDVPLQELKL---ELFKDG---------RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVK 234 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~---~L~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 234 (814)
.++.|-++.+++|++ +|..++ ++=+.++|++|.|||-||++++-.. ++-+++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA--------gVPF~svSGS---- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSVSGS---- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc--------CCceeeechH----
Confidence 356787776655554 444321 4558899999999999999999732 2445555432
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCCc---------------hHHHhhhcc---c-
Q 003515 235 GIVQKVYQHKGYAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSGS---------------ESLLQKFKF---Q- 294 (814)
Q Consensus 235 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~l~~kr~LlVlDdv~~~~---------------~~~~~~~~~---~- 294 (814)
+.++.+.... ..+++.++ ..=...++.|.+|+++... +.-+.++.. +
T Consensus 379 ----EFvE~~~g~~---------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf 445 (774)
T KOG0731|consen 379 ----EFVEMFVGVG---------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGF 445 (774)
T ss_pred ----HHHHHhcccc---------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCC
Confidence 2222222111 12344444 2225678899988874211 112222221 1
Q ss_pred CCCe-EEEE-Eccccc------cCC---CCccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhH
Q 003515 295 LPYY-KILV-TSRSVF------PQF---GSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLA 361 (814)
Q Consensus 295 ~~gs-~iiv-TtR~~~------~~~---~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Pla 361 (814)
..+. -|++ +|+... ... ...+.++.-+.....++|..++...... .+..++.+ |+...-|.+=|
T Consensus 446 ~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 446 ETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred cCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHH
Confidence 1122 3333 343321 112 2367788888888889998887544332 23455666 88888887744
No 273
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.83 E-value=0.018 Score=60.12 Aligned_cols=83 Identities=20% Similarity=0.284 Sum_probs=51.7
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-----CCCChHHHHHHHH
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVP-----EFQTDEDAINDLE 262 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 262 (814)
-+++-|+|++|+||||||.+++.. .... ...++|++..+.++.. .++.++.+.. .....++....+.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~--~~~~-g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAE--AQKL-GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHc-CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 578899999999999999988752 2222 3447799987776653 3344433211 1123344444444
Q ss_pred HHhcccCCCcEEEEEeCC
Q 003515 263 RLLKPIRPEAILLVLDDV 280 (814)
Q Consensus 263 ~~l~~l~~kr~LlVlDdv 280 (814)
.+++ .+..-+||+|.|
T Consensus 127 ~li~--s~~~~lIVIDSv 142 (325)
T cd00983 127 SLVR--SGAVDLIVVDSV 142 (325)
T ss_pred HHHh--ccCCCEEEEcch
Confidence 4442 356679999987
No 274
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.031 Score=64.44 Aligned_cols=148 Identities=16% Similarity=0.157 Sum_probs=80.2
Q ss_pred CCCCCccchhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhhc-cCC-----CcEEEEEecCCCCHHHHHHHH
Q 003515 167 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLG-KFK-----DNIFFVTVSQTPNVKGIVQKV 240 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~-----~~~~wv~v~~~~~~~~~~~~i 240 (814)
+.++||++|+.++++.|....-.--.++|.+|+|||++|.-++. ++.. .-+ ..++=.+ |
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~--rIv~g~VP~~L~~~~i~sLD-------------~ 234 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQ--RIVNGDVPESLKDKRIYSLD-------------L 234 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHH--HHhcCCCCHHHcCCEEEEec-------------H
Confidence 34699999999999999843322335789999999998777665 3322 211 1121111 1
Q ss_pred HHHhCCCCCCCCChHHHHHHHHHHhccc-CCCcEEEEEeCCCCCc---------hH---HHhhhcccCCCeEEEEEcccc
Q 003515 241 YQHKGYAVPEFQTDEDAINDLERLLKPI-RPEAILLVLDDVWSGS---------ES---LLQKFKFQLPYYKILVTSRSV 307 (814)
Q Consensus 241 ~~~l~~~~~~~~~~~~~~~~l~~~l~~l-~~kr~LlVlDdv~~~~---------~~---~~~~~~~~~~gs~iivTtR~~ 307 (814)
..-..+.. ...+..++++.+++.+ +.++..|++|.+...- -+ ++.+-...+.--.|-.||-++
T Consensus 235 g~LvAGak----yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~E 310 (786)
T COG0542 235 GSLVAGAK----YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDE 310 (786)
T ss_pred HHHhcccc----ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHH
Confidence 11111111 1122334455555333 3448999999974311 11 222222222223455677665
Q ss_pred cc-------CCC---CccccCCCCHHHHHHHHHHHc
Q 003515 308 FP-------QFG---SGYDLKPLNDEAARTLFRYSA 333 (814)
Q Consensus 308 ~~-------~~~---~~~~l~~L~~~~~~~Lf~~~a 333 (814)
.. +.. ..+.+...+.+++..+++-..
T Consensus 311 YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 311 YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 22 111 167788888888888886543
No 275
>PRK09354 recA recombinase A; Provisional
Probab=95.81 E-value=0.029 Score=59.06 Aligned_cols=84 Identities=19% Similarity=0.260 Sum_probs=53.4
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-----CCCChHHHHHHHH
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVP-----EFQTDEDAINDLE 262 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 262 (814)
-+++-|+|++|+||||||.+++.. .... ...++|++..+.++.. .++.++.+.. .....++....+.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~--~~~~-G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAE--AQKA-GGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHc-CCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 578999999999999999988763 2222 3447899988777753 3444443211 1123444444444
Q ss_pred HHhcccCCCcEEEEEeCCC
Q 003515 263 RLLKPIRPEAILLVLDDVW 281 (814)
Q Consensus 263 ~~l~~l~~kr~LlVlDdv~ 281 (814)
.+++ .++.-+||+|-|-
T Consensus 132 ~li~--s~~~~lIVIDSva 148 (349)
T PRK09354 132 TLVR--SGAVDLIVVDSVA 148 (349)
T ss_pred HHhh--cCCCCEEEEeChh
Confidence 4443 3566799999973
No 276
>PRK06547 hypothetical protein; Provisional
Probab=95.77 E-value=0.013 Score=55.60 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=27.1
Q ss_pred HHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 178 ELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 178 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
.+...+......+|+|.|.+|+||||+|+.+.+
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~ 37 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAA 37 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 344445566788999999999999999999987
No 277
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.75 E-value=0.045 Score=58.42 Aligned_cols=87 Identities=20% Similarity=0.273 Sum_probs=50.3
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCC-CcEEEEEecCC-CCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHh
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFK-DNIFFVTVSQT-PNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL 265 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 265 (814)
..++.++|+.|+||||++..+.. +....+. .++..++.... ....+-+....+.++..........+. ...+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~--~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l----~~~l 210 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA--RCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDL----QLAL 210 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccH----HHHH
Confidence 46899999999999999999887 3333332 23656654321 234455566666666544332222222 2223
Q ss_pred cccCCCcEEEEEeCCC
Q 003515 266 KPIRPEAILLVLDDVW 281 (814)
Q Consensus 266 ~~l~~kr~LlVlDdv~ 281 (814)
..+.++ -+|++|..-
T Consensus 211 ~~l~~~-DlVLIDTaG 225 (374)
T PRK14722 211 AELRNK-HMVLIDTIG 225 (374)
T ss_pred HHhcCC-CEEEEcCCC
Confidence 333444 456699874
No 278
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.75 E-value=0.051 Score=54.65 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 186 DGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 186 ~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
....+|+|.|..|.|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999986
No 279
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.73 E-value=0.04 Score=58.13 Aligned_cols=37 Identities=22% Similarity=0.396 Sum_probs=27.5
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEe
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTV 227 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v 227 (814)
...+.++|..|+|||.||.++++ ..... ...|.++++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~--~l~~~-g~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAK--ELLDR-GKSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHH--HHHHC-CCeEEEEEH
Confidence 47799999999999999999998 33322 123566665
No 280
>PRK10867 signal recognition particle protein; Provisional
Probab=95.72 E-value=0.025 Score=61.75 Aligned_cols=24 Identities=42% Similarity=0.447 Sum_probs=20.7
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
...+|.++|.+|+||||.|..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999998777765
No 281
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.71 E-value=0.08 Score=56.27 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhh
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
.++|+++|.+|+||||++..++.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHH
Confidence 57999999999999999988876
No 282
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.038 Score=55.86 Aligned_cols=82 Identities=18% Similarity=0.413 Sum_probs=46.9
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchh--hhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHh
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQ--VLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL 265 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 265 (814)
-++|.++|++|.|||+|++++++.-. ..+.|..++ .+.+.. ..+..+-...-|. -.....+++++++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~-liEins----hsLFSKWFsESgK------lV~kmF~kI~ELv 245 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQ-LIEINS----HSLFSKWFSESGK------LVAKMFQKIQELV 245 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccce-EEEEeh----hHHHHHHHhhhhh------HHHHHHHHHHHHH
Confidence 48899999999999999999998533 344565544 455432 2333332222111 1223344555555
Q ss_pred cccCCCcEEEEEeCCC
Q 003515 266 KPIRPEAILLVLDDVW 281 (814)
Q Consensus 266 ~~l~~kr~LlVlDdv~ 281 (814)
+- ++-=+.+.+|.|.
T Consensus 246 ~d-~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 246 ED-RGNLVFVLIDEVE 260 (423)
T ss_pred hC-CCcEEEEEeHHHH
Confidence 21 3344556678883
No 283
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.69 E-value=0.064 Score=55.66 Aligned_cols=87 Identities=22% Similarity=0.287 Sum_probs=46.5
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhhchhhh-ccCCCcEEEEEecCCC-CHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCKDDQVL-GKFKDNIFFVTVSQTP-NVKGIVQKVYQHKGYAVPEFQTDEDAINDLERL 264 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 264 (814)
..++++|+|++|+||||++..++.....+ +.+ .+..++..... ...+-+....+.++.......... .+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~--~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~----~l~~~ 266 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK--KVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPK----ELRKA 266 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC--eEEEEECCccchhHHHHHHHHHHHhCCceeccCCHH----HHHHH
Confidence 35799999999999999998887632222 223 35566654321 122233333444443332222222 24444
Q ss_pred hcccCCCcEEEEEeCC
Q 003515 265 LKPIRPEAILLVLDDV 280 (814)
Q Consensus 265 l~~l~~kr~LlVlDdv 280 (814)
++.+.+ .=+|++|..
T Consensus 267 l~~~~~-~d~vliDt~ 281 (282)
T TIGR03499 267 LDRLRD-KDLILIDTA 281 (282)
T ss_pred HHHccC-CCEEEEeCC
Confidence 443343 347777753
No 284
>PRK07667 uridine kinase; Provisional
Probab=95.63 E-value=0.016 Score=56.49 Aligned_cols=35 Identities=29% Similarity=0.306 Sum_probs=28.1
Q ss_pred hHHHHHHHh--hCCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 176 LQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 176 ~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
.+.|.+.+. .....+|+|.|.+|+||||+|+.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 456666665 33457999999999999999999987
No 285
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.62 E-value=0.064 Score=56.82 Aligned_cols=86 Identities=19% Similarity=0.243 Sum_probs=49.1
Q ss_pred cEEEEEEcCCCCCHH-HHHHHHhhchhhhccCCCcEEEEEecCC-CCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHh
Q 003515 188 RQVIVVSAPGGYGKT-TLVKKLCKDDQVLGKFKDNIFFVTVSQT-PNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL 265 (814)
Q Consensus 188 ~~vi~I~G~gGiGKT-tLa~~v~~~~~~~~~F~~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 265 (814)
.++|.++|+.|+||| |||+..+.-.....+. ++..++.... ....+-++.-++-++.+.....+..+....+..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~--kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~-- 278 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKK--KVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEA-- 278 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCc--ceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHH--
Confidence 789999999999998 5787777633223333 3566766332 234444555566666655444444443333333
Q ss_pred cccCCCcEEEEEeCC
Q 003515 266 KPIRPEAILLVLDDV 280 (814)
Q Consensus 266 ~~l~~kr~LlVlDdv 280 (814)
++.. =+|.+|=+
T Consensus 279 --l~~~-d~ILVDTa 290 (407)
T COG1419 279 --LRDC-DVILVDTA 290 (407)
T ss_pred --hhcC-CEEEEeCC
Confidence 2333 34555655
No 286
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.59 E-value=0.025 Score=53.96 Aligned_cols=22 Identities=50% Similarity=0.730 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhc
Q 003515 190 VIVVSAPGGYGKTTLVKKLCKD 211 (814)
Q Consensus 190 vi~I~G~gGiGKTtLa~~v~~~ 211 (814)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999983
No 287
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.59 E-value=0.031 Score=60.98 Aligned_cols=24 Identities=38% Similarity=0.379 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
...++.++|.+|+||||.|..++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999888876
No 288
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.58 E-value=0.038 Score=64.96 Aligned_cols=106 Identities=18% Similarity=0.192 Sum_probs=60.6
Q ss_pred CCCCCccchhHHHHHHHhh------C---CcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHH
Q 003515 167 PVTPGLDVPLQELKLELFK------D---GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIV 237 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~------~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~ 237 (814)
..++|-++.++.|.+.+.. + ....+.++|++|+|||++|+.++. ... ...+.+++++......
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~--~l~----~~~i~id~se~~~~~~-- 529 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK--ALG----IELLRFDMSEYMERHT-- 529 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHH--HhC----CCcEEeechhhccccc--
Confidence 3578999999888888762 1 135688999999999999999987 332 2244566554332221
Q ss_pred HHHHHHhCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH
Q 003515 238 QKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES 286 (814)
Q Consensus 238 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~~~ 286 (814)
+.+-+|.+ +..... +....+.+.+. +....+|+||++......
T Consensus 530 --~~~LiG~~-~gyvg~-~~~g~L~~~v~--~~p~sVlllDEieka~~~ 572 (758)
T PRK11034 530 --VSRLIGAP-PGYVGF-DQGGLLTDAVI--KHPHAVLLLDEIEKAHPD 572 (758)
T ss_pred --HHHHcCCC-CCcccc-cccchHHHHHH--hCCCcEEEeccHhhhhHH
Confidence 12222321 111110 01112222221 234579999999766544
No 289
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.57 E-value=0.095 Score=54.29 Aligned_cols=52 Identities=15% Similarity=0.326 Sum_probs=36.5
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHH
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQH 243 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~ 243 (814)
..++.|.|.+|+||||++.+++. .........++|+++.. +..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~--~~~~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYAL--DLITQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH--HHHHhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 45888999999999999998876 33222234578988765 455666666554
No 290
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.55 E-value=0.07 Score=56.53 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=41.9
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhh---ccCCCcEEEEEecCCCCHHHHHHHHHHHhCCC
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVL---GKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYA 247 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 247 (814)
..++-|+|.+|+|||+|+..++-..... ..-...++|++....++.+.+. +|++.++..
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~ 184 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLN 184 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCC
Confidence 5788899999999999998877532221 1122358899999999887764 556665543
No 291
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.54 E-value=0.083 Score=53.90 Aligned_cols=90 Identities=21% Similarity=0.195 Sum_probs=53.0
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCC-CCCCCCChHHHHHHHHHHhc
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGY-AVPEFQTDEDAINDLERLLK 266 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~l~~~l~ 266 (814)
.+++=|+|+.|.||||+|.+++-. ....-. .++|++....+++..+..--...+.. -.....+.++...-+.....
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~-~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~ 136 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVAN--AQKPGG-KAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLAR 136 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHH--hhcCCC-eEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHH
Confidence 578889999999999999887763 222222 37899999999987754433331211 11111122222222222222
Q ss_pred ccCCCcEEEEEeCC
Q 003515 267 PIRPEAILLVLDDV 280 (814)
Q Consensus 267 ~l~~kr~LlVlDdv 280 (814)
....+--|+|+|.+
T Consensus 137 ~~~~~i~LvVVDSv 150 (279)
T COG0468 137 SGAEKIDLLVVDSV 150 (279)
T ss_pred hccCCCCEEEEecC
Confidence 22335679999988
No 292
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.53 E-value=0.068 Score=56.66 Aligned_cols=57 Identities=18% Similarity=0.234 Sum_probs=40.3
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhcc---CCCcEEEEEecCCCCHHHHHHHHHHHhC
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGK---FKDNIFFVTVSQTPNVKGIVQKVYQHKG 245 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F~~~~~wv~v~~~~~~~~~~~~i~~~l~ 245 (814)
..++-|+|.+|+|||+++.+++........ -...++|++..+.++...+.+ +++.++
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 578899999999999999988763222211 123588999998888877654 344444
No 293
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.52 E-value=0.084 Score=48.97 Aligned_cols=116 Identities=21% Similarity=0.218 Sum_probs=60.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecC---CCCHHHHHHHHH--HH--hCCCCC-CCCChHHHHHH
Q 003515 189 QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQ---TPNVKGIVQKVY--QH--KGYAVP-EFQTDEDAIND 260 (814)
Q Consensus 189 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~---~~~~~~~~~~i~--~~--l~~~~~-~~~~~~~~~~~ 260 (814)
..|-|++..|.||||+|...+- +...+ ..++.++.+-. ......++..+- .. .+.... ......+....
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~-g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGH-GYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHC-CCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHH
Confidence 4678888899999999987765 33332 22355655532 233444443330 00 011000 00111122112
Q ss_pred HHHHh----ccc-CCCcEEEEEeCCCC-------CchHHHhhhcccCCCeEEEEEcccc
Q 003515 261 LERLL----KPI-RPEAILLVLDDVWS-------GSESLLQKFKFQLPYYKILVTSRSV 307 (814)
Q Consensus 261 l~~~l----~~l-~~kr~LlVlDdv~~-------~~~~~~~~~~~~~~gs~iivTtR~~ 307 (814)
.++.+ +.+ .++-=|||||++-. ..+.+.+.+....++..||+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 22222 222 34556999999732 2244566565555678999999985
No 294
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.50 E-value=0.064 Score=50.43 Aligned_cols=40 Identities=28% Similarity=0.459 Sum_probs=29.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCC
Q 003515 190 VIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPN 232 (814)
Q Consensus 190 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~ 232 (814)
++.|+|.+|+||||++..+... ... ....++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~-~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IAT-KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHh-cCCEEEEEECCcchH
Confidence 4689999999999999999873 222 334477888765543
No 295
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.46 E-value=0.08 Score=50.89 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhh
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
-.+++|.|..|.|||||++.+..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G 50 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTG 50 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999986
No 296
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.45 E-value=0.016 Score=56.25 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
+.++|.|+|++|+||||+|+.+.+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999986
No 297
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.44 E-value=0.12 Score=49.86 Aligned_cols=113 Identities=20% Similarity=0.245 Sum_probs=57.8
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEE--EecCCCCHHHHH------HHHHHHhCCCC------CCCCC
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFV--TVSQTPNVKGIV------QKVYQHKGYAV------PEFQT 253 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv--~v~~~~~~~~~~------~~i~~~l~~~~------~~~~~ 253 (814)
-.+++|+|..|.|||||.+.++.. .......+.|- .+.. .+..... .++++.++... ...+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~---~~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL---LKPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 468999999999999999999862 22333434331 1211 1222211 12344444321 11112
Q ss_pred hHHHHHHHHHHhcccCCCcEEEEEeCCCCCc-----hHHHhhhccc-CC-CeEEEEEcccc
Q 003515 254 DEDAINDLERLLKPIRPEAILLVLDDVWSGS-----ESLLQKFKFQ-LP-YYKILVTSRSV 307 (814)
Q Consensus 254 ~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~-----~~~~~~~~~~-~~-gs~iivTtR~~ 307 (814)
.....-.+. ..+-..+-++++|+.-..- +.+...+... .. +..||++|.+.
T Consensus 101 G~~qrl~la---ral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~ 158 (180)
T cd03214 101 GERQRVLLA---RALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDL 158 (180)
T ss_pred HHHHHHHHH---HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 222222222 3345678899999874332 1233333322 22 66788888654
No 298
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.43 E-value=0.23 Score=54.02 Aligned_cols=24 Identities=38% Similarity=0.422 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
...+|.++|..|+||||++..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999888875
No 299
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.40 E-value=0.053 Score=55.30 Aligned_cols=57 Identities=18% Similarity=0.307 Sum_probs=40.9
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhh---ccCCCcEEEEEecCCCCHHHHHHHHHHHhC
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVL---GKFKDNIFFVTVSQTPNVKGIVQKVYQHKG 245 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~ 245 (814)
..+.=|+|.+|+|||.|+..++-...+. ...+.+++|++....++.+.+. +|++..+
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 4588899999999999998776533332 2345568999999989887765 4566543
No 300
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.39 E-value=0.011 Score=53.15 Aligned_cols=20 Identities=45% Similarity=0.581 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 003515 191 IVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 191 i~I~G~gGiGKTtLa~~v~~ 210 (814)
|+|.|.+|+||||+|+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999987
No 301
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.37 E-value=0.076 Score=55.90 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=39.8
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccC---CCcEEEEEecCCCCHHHHHHHHHHHhCC
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF---KDNIFFVTVSQTPNVKGIVQKVYQHKGY 246 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~~wv~v~~~~~~~~~~~~i~~~l~~ 246 (814)
..++.|+|.+|+|||||+..++......... ...++|++..+.++...+ .++++.++.
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 6789999999999999999887522221111 124789999888887763 445555543
No 302
>PTZ00035 Rad51 protein; Provisional
Probab=95.37 E-value=0.095 Score=55.68 Aligned_cols=58 Identities=19% Similarity=0.251 Sum_probs=40.1
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhh---ccCCCcEEEEEecCCCCHHHHHHHHHHHhCC
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVL---GKFKDNIFFVTVSQTPNVKGIVQKVYQHKGY 246 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~ 246 (814)
..++.|+|.+|+|||||+..++-..... ..-...++|++....++.+.+ .++++.++.
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 5789999999999999998887532221 112345779998887777763 444555543
No 303
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.35 E-value=0.0044 Score=61.58 Aligned_cols=138 Identities=14% Similarity=0.022 Sum_probs=74.7
Q ss_pred ccEEecccCcCcCcC-Cccc-cCCCCccEEEeecCCCCC--CCchhccCCCCcCEeecccCCCCCCCccccCCCCCCCEE
Q 003515 653 LLEIDIDYCNDLIEL-PDGL-CDIVSIKKLRITNCHKLS--ALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFL 728 (814)
Q Consensus 653 L~~L~L~~~~~~~~l-p~~i-~~l~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L 728 (814)
++.|.+.+|.+-..- -..| ...+.++.|||.+|.+.. ++-.-+.+|+.|++|+|+.|+....+...-..+.+|+.|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 445566665432211 1112 345678888888876432 233345678888889888776543322111355688888
Q ss_pred eccCCCCCC-ccchhhcCCCCCCEEeccCCCCCCcC---hhhh-cCCCCCEEEcCCchhhhhHhhhh
Q 003515 729 DISECLNIQ-ELPERIGELCSLKTLCLKGCSMFELP---SSIL-NLENLEVVKCDEETAYQWEYFQL 790 (814)
Q Consensus 729 ~l~~~~~~~-~lp~~l~~l~~L~~L~l~~~~l~~lp---~~l~-~l~~L~~L~l~~~~~~~~~~~~~ 790 (814)
-+.|....- ..-..+..++.++.|+++.|++..+. ..+. --+.++.|+.-.+....|..+..
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~ 193 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNK 193 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHh
Confidence 887643221 23344567777888888887643221 1111 12234445555555555555433
No 304
>PRK14974 cell division protein FtsY; Provisional
Probab=95.33 E-value=0.045 Score=57.73 Aligned_cols=91 Identities=19% Similarity=0.170 Sum_probs=47.7
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhhchhhhc-cCCCcEEEEEecCCCC--HHHHHHHHHHHhCCCCCCCCChHHHHHHHHH
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLG-KFKDNIFFVTVSQTPN--VKGIVQKVYQHKGYAVPEFQTDEDAINDLER 263 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~~wv~v~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 263 (814)
+..+|.++|++|+||||++..++. .... .+. +..+. .+.+. ..+-+......++..........+....+..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~--~l~~~g~~--V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ 213 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY--YLKKNGFS--VVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYD 213 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH--HHHHcCCe--EEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHH
Confidence 468999999999999998888776 3332 232 44444 33333 2233455566666433221111111111222
Q ss_pred Hhcc--cCCCcEEEEEeCCCCC
Q 003515 264 LLKP--IRPEAILLVLDDVWSG 283 (814)
Q Consensus 264 ~l~~--l~~kr~LlVlDdv~~~ 283 (814)
.++. ..+.. +|++|-.-..
T Consensus 214 ai~~~~~~~~D-vVLIDTaGr~ 234 (336)
T PRK14974 214 AIEHAKARGID-VVLIDTAGRM 234 (336)
T ss_pred HHHHHHhCCCC-EEEEECCCcc
Confidence 2211 12333 8899987443
No 305
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.32 E-value=0.18 Score=50.64 Aligned_cols=48 Identities=13% Similarity=0.337 Sum_probs=31.8
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHH
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKV 240 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i 240 (814)
..++.|.|.+|+||||+|.++... -.+... ++++++..+ +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g~--~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYG-FLQNGY--SVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH-HHhCCC--cEEEEeCCC--CHHHHHHHH
Confidence 468999999999999998666552 223332 355776433 456666665
No 306
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.30 E-value=0.028 Score=53.76 Aligned_cols=49 Identities=29% Similarity=0.426 Sum_probs=34.0
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHH
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQ 242 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~ 242 (814)
..+|+|-||=|+||||||+.+.+ +.. |. ++.-.+.+.+=...+..++-+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~--~l~--~~--~~~E~vednp~L~~FY~d~~~ 52 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAE--HLG--FK--VFYELVEDNPFLDLFYEDPER 52 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHH--HhC--Cc--eeeecccCChHHHHHHHhHHH
Confidence 46899999999999999999987 333 33 445556665445555554443
No 307
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.052 Score=53.12 Aligned_cols=87 Identities=16% Similarity=0.233 Sum_probs=53.3
Q ss_pred CCccchhHHHHHHHhh-------------CCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHH
Q 003515 170 PGLDVPLQELKLELFK-------------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGI 236 (814)
Q Consensus 170 vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~ 236 (814)
=|-+++++++.+...- +..+=|..+|++|.|||-+|++|++ +....| +.|-
T Consensus 180 ggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf------irvi-------- 243 (435)
T KOG0729|consen 180 GGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF------IRVI-------- 243 (435)
T ss_pred cchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE------Eeeh--------
Confidence 4677777777665541 2356688999999999999999998 554444 3331
Q ss_pred HHHHHHHhCCCCCCCCChHHHHHHHHHHhccc-CCCcEEEEEeCCC
Q 003515 237 VQKVYQHKGYAVPEFQTDEDAINDLERLLKPI-RPEAILLVLDDVW 281 (814)
Q Consensus 237 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~l-~~kr~LlVlDdv~ 281 (814)
-.++.+..- .+....++++++.. ..|-|+|+||.++
T Consensus 244 gselvqkyv---------gegarmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 244 GSELVQKYV---------GEGARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred hHHHHHHHh---------hhhHHHHHHHHHHhcccceEEEEeeccc
Confidence 122222211 12233444554332 4567888999873
No 308
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.29 E-value=1.1 Score=46.73 Aligned_cols=157 Identities=8% Similarity=0.054 Sum_probs=88.3
Q ss_pred HHHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhchhh--------hc-cCCCcEEEEEe-cCCCCHHHHHHHHHHHhC
Q 003515 177 QELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQV--------LG-KFKDNIFFVTV-SQTPNVKGIVQKVYQHKG 245 (814)
Q Consensus 177 ~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~--------~~-~F~~~~~wv~v-~~~~~~~~~~~~i~~~l~ 245 (814)
+.+.+.+..+. .++..++|..|.||+++|..+.+ .+ .. ..+..+.+++. +.....+++. ++.+.+.
T Consensus 6 ~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~--~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~ 82 (299)
T PRK07132 6 KFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLN--KFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLY 82 (299)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHH--HHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhc
Confidence 44445555444 56778999999999999998876 33 11 11211223321 1111222211 2222221
Q ss_pred CCCCCCCChHHHHHHHHHHhccc-CCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEccccc------cCCCCc
Q 003515 246 YAVPEFQTDEDAINDLERLLKPI-RPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------PQFGSG 314 (814)
Q Consensus 246 ~~~~~~~~~~~~~~~l~~~l~~l-~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------~~~~~~ 314 (814)
. ... .+++-++|+||+...... ++..+....+++.+|++|.+.. ..-+..
T Consensus 83 ~-------------------~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~ 143 (299)
T PRK07132 83 F-------------------SSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQV 143 (299)
T ss_pred c-------------------CCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEE
Confidence 1 111 257888999998665532 5555555556777777665442 122347
Q ss_pred cccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHH
Q 003515 315 YDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTV 364 (814)
Q Consensus 315 ~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 364 (814)
+++.++++++..+.+.... . .++.+..++...+|.=-|+..
T Consensus 144 ~~f~~l~~~~l~~~l~~~~----~-----~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 144 FNVKEPDQQKILAKLLSKN----K-----EKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred EECCCCCHHHHHHHHHHcC----C-----ChhHHHHHHHHcCCHHHHHHH
Confidence 8999999999887776431 1 234566677777763345554
No 309
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.24 E-value=0.03 Score=51.68 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=28.0
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEe
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTV 227 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v 227 (814)
..+|.|.|.+|.||||||+++.+ +....-.. +++++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~-~~~LDg 38 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIK-VYLLDG 38 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS--EEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCc-EEEecC
Confidence 36899999999999999999998 66554333 656653
No 310
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.23 E-value=0.065 Score=53.31 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=27.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhchhhhc-cCCCcEEEEEecCCC
Q 003515 190 VIVVSAPGGYGKTTLVKKLCKDDQVLG-KFKDNIFFVTVSQTP 231 (814)
Q Consensus 190 vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~~wv~v~~~~ 231 (814)
+|+|.|.+|+||||+|+.+.. .+.. .....+..++...-+
T Consensus 1 IigI~G~sGSGKTTla~~L~~--~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA--LLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH--HHhhcCCCCcEEEEecCccc
Confidence 589999999999999999987 4432 122335556655443
No 311
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.23 E-value=0.014 Score=57.00 Aligned_cols=21 Identities=48% Similarity=0.825 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 003515 190 VIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 190 vi~I~G~gGiGKTtLa~~v~~ 210 (814)
||+|.|.+|+||||+|+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999987
No 312
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.22 E-value=0.11 Score=50.52 Aligned_cols=42 Identities=21% Similarity=0.461 Sum_probs=27.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhhchhhhccC-------CCcEEEEEecCC
Q 003515 189 QVIVVSAPGGYGKTTLVKKLCKDDQVLGKF-------KDNIFFVTVSQT 230 (814)
Q Consensus 189 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-------~~~~~wv~v~~~ 230 (814)
.++.|.|.+|+||||++..+....-....| +.+++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 478899999999999998887643322222 346888887665
No 313
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.20 E-value=0.015 Score=45.75 Aligned_cols=21 Identities=38% Similarity=0.692 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 003515 190 VIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 190 vi~I~G~gGiGKTtLa~~v~~ 210 (814)
+|+|.|..|+||||+++.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 314
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.23 Score=54.81 Aligned_cols=123 Identities=11% Similarity=0.157 Sum_probs=71.2
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhc-
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLK- 266 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~- 266 (814)
..=|.+||++|.|||-||++|++ +-.-. |++|..+ +++. ..-+ +....++..++
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVAN--Eag~N------FisVKGP----ELlN----kYVG---------ESErAVR~vFqR 599 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVAN--EAGAN------FISVKGP----ELLN----KYVG---------ESERAVRQVFQR 599 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhh--hccCc------eEeecCH----HHHH----HHhh---------hHHHHHHHHHHH
Confidence 34578999999999999999999 44333 4555332 2222 2111 11223444442
Q ss_pred ccCCCcEEEEEeCCCCCc-----------hHHHhhhcc---cC---CCeEEEEEcccccc---------CCCCccccCCC
Q 003515 267 PIRPEAILLVLDDVWSGS-----------ESLLQKFKF---QL---PYYKILVTSRSVFP---------QFGSGYDLKPL 320 (814)
Q Consensus 267 ~l~~kr~LlVlDdv~~~~-----------~~~~~~~~~---~~---~gs~iivTtR~~~~---------~~~~~~~l~~L 320 (814)
.-...+|+|+||.++..- .-+...+.. +. .|.-||-.|..+.. ..+....++.-
T Consensus 600 AR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lP 679 (802)
T KOG0733|consen 600 ARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLP 679 (802)
T ss_pred hhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCC
Confidence 225789999999984311 113333332 22 34556666654421 12336777777
Q ss_pred CHHHHHHHHHHHccc
Q 003515 321 NDEAARTLFRYSANL 335 (814)
Q Consensus 321 ~~~~~~~Lf~~~a~~ 335 (814)
+.+|-.++++.....
T Consensus 680 n~~eR~~ILK~~tkn 694 (802)
T KOG0733|consen 680 NAEERVAILKTITKN 694 (802)
T ss_pred CHHHHHHHHHHHhcc
Confidence 888888888877653
No 315
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.15 E-value=0.088 Score=52.66 Aligned_cols=87 Identities=14% Similarity=0.193 Sum_probs=49.7
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecC-----CCCHHHHHHHHHHHhCCCC-------CCCCCh
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQ-----TPNVKGIVQKVYQHKGYAV-------PEFQTD 254 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~-----~~~~~~~~~~i~~~l~~~~-------~~~~~~ 254 (814)
+..+++|+|.+|.||||+++.+.. +...-.+.+ ++.-.+ .....+-..++++..+... .+.+..
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i-~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG---LEEPTSGEI-LFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc---CcCCCCceE-EEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 356899999999999999999985 333333324 443211 1123344556666655332 112222
Q ss_pred HHHHHHHHHHhcccCCCcEEEEEeCC
Q 003515 255 EDAINDLERLLKPIRPEAILLVLDDV 280 (814)
Q Consensus 255 ~~~~~~l~~~l~~l~~kr~LlVlDdv 280 (814)
....-.+. ..+.-++-+||.|..
T Consensus 114 QrQRi~IA---RALal~P~liV~DEp 136 (268)
T COG4608 114 QRQRIGIA---RALALNPKLIVADEP 136 (268)
T ss_pred hhhhHHHH---HHHhhCCcEEEecCc
Confidence 21112223 334788899999985
No 316
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.14 E-value=0.28 Score=55.79 Aligned_cols=45 Identities=18% Similarity=0.233 Sum_probs=37.9
Q ss_pred CCCCCCccchhHHHHHHHh--hCCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 166 PPVTPGLDVPLQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
...++|+...++++.+.+. ......|.|+|..|+|||++|+.+++
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~ 232 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHA 232 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHH
Confidence 4568999999999888877 33456788999999999999999987
No 317
>PTZ00301 uridine kinase; Provisional
Probab=95.13 E-value=0.033 Score=54.76 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=23.7
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccC
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF 218 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 218 (814)
..+|+|.|.+|+||||||+.+.+ ++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~--~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS--ELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH--HHHhhc
Confidence 46899999999999999999886 443333
No 318
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.12 E-value=0.11 Score=49.59 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhh
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
-.+++|+|..|+|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 46899999999999999998863
No 319
>PRK08233 hypothetical protein; Provisional
Probab=95.10 E-value=0.018 Score=55.57 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhh
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
..+|+|.|.+|+||||||+.++.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999986
No 320
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.10 E-value=0.37 Score=50.69 Aligned_cols=49 Identities=27% Similarity=0.378 Sum_probs=35.2
Q ss_pred ccccCCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHH
Q 003515 314 GYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLAL 362 (814)
Q Consensus 314 ~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai 362 (814)
++++++++.+|+..++..+.-.+-.......+...+++....+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 5689999999999999887754433222334566777777779999644
No 321
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.01 E-value=0.044 Score=54.21 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhh
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
.+++.|+|..|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 322
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.00 E-value=0.021 Score=56.55 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 186 DGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 186 ~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
.+..+|+|.|.+|+||||||+.+..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999987
No 323
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=94.99 E-value=0.14 Score=54.60 Aligned_cols=42 Identities=19% Similarity=0.155 Sum_probs=32.5
Q ss_pred chhHHHHHHHhh---CCcEEEEEEcCCCCCHHHHHHHHhhchhhhcc
Q 003515 174 VPLQELKLELFK---DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGK 217 (814)
Q Consensus 174 ~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~ 217 (814)
.-.+.|.+.+.. +...+|+|.|.=|+||||+.+.+.+ .....
T Consensus 3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~--~L~~~ 47 (325)
T PF07693_consen 3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKE--ELKED 47 (325)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHH--HHhcc
Confidence 345666777764 4578999999999999999999987 44444
No 324
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.95 E-value=0.23 Score=47.09 Aligned_cols=23 Identities=26% Similarity=0.622 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhh
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
-.+++|+|..|.|||||++.+..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAG 49 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999986
No 325
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.94 E-value=0.022 Score=56.29 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
...+|+|+|.+|+||||||+.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999986
No 326
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.94 E-value=0.046 Score=55.95 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=17.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhh
Q 003515 189 QVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 189 ~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
+.|.|.|.+|+||||+|+.+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~ 23 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKK 23 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHH
Confidence 5689999999999999999987
No 327
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.93 E-value=0.02 Score=52.71 Aligned_cols=21 Identities=48% Similarity=0.849 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 003515 190 VIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 190 vi~I~G~gGiGKTtLa~~v~~ 210 (814)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999885
No 328
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.92 E-value=0.14 Score=54.46 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=33.3
Q ss_pred CCCccchhHHHHHHHh--hCCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 169 TPGLDVPLQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 169 ~vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
++|....+.++.+.+. .....-|.|+|..|+||+++|+.+++
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~ 44 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHY 44 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHH
Confidence 4777777787777766 23345678999999999999999986
No 329
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.91 E-value=0.23 Score=47.43 Aligned_cols=24 Identities=46% Similarity=0.567 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
.-.+++|+|..|.|||||.+.+..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHc
Confidence 456899999999999999999885
No 330
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.90 E-value=0.069 Score=54.91 Aligned_cols=39 Identities=23% Similarity=0.371 Sum_probs=28.1
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEec
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVS 228 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~ 228 (814)
+.+++.++|++|+||||++..++. ..... ..++.+++..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~--~l~~~-g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLAN--KLKKQ-GKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHhc-CCEEEEEeCC
Confidence 468999999999999999888876 33322 2346667653
No 331
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.90 E-value=0.18 Score=46.47 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhh
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
-.+++|+|..|.|||||++.+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G 48 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAG 48 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcC
Confidence 46899999999999999999986
No 332
>PRK06762 hypothetical protein; Provisional
Probab=94.89 E-value=0.022 Score=54.03 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhh
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
..+|.|.|++|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 333
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.87 E-value=0.19 Score=50.76 Aligned_cols=48 Identities=15% Similarity=0.286 Sum_probs=33.3
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHH
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKV 240 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i 240 (814)
..++.|.|.+|+|||++|.++... -.+. ...++|++..+ +..++.+.+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~-~~~~--ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWN-GLQM--GEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH-HHHc--CCcEEEEEeeC--CHHHHHHHH
Confidence 578999999999999999887652 2222 22367888765 455555553
No 334
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.87 E-value=0.082 Score=51.73 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhh
Q 003515 189 QVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 189 ~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
.+|.|+|+.|.||||++..+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~ 23 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID 23 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998776
No 335
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.41 Score=48.03 Aligned_cols=91 Identities=21% Similarity=0.358 Sum_probs=55.5
Q ss_pred CCCCCccchhHHHHHHHh----------hC--CcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHH
Q 003515 167 PVTPGLDVPLQELKLELF----------KD--GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVK 234 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~----------~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 234 (814)
.++-|.+...+.|.+.+. .. ..+-|.++|++|.||+-||++|+.. -.. . |++||..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE--AnS-----T-FFSvSSS---- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE--ANS-----T-FFSVSSS---- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh--cCC-----c-eEEeehH----
Confidence 355788888888777654 11 2567899999999999999999973 212 2 4455442
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCC
Q 003515 235 GIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVW 281 (814)
Q Consensus 235 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~ 281 (814)
++.. +.+|. .+.....|.++-. +.|+-.|++|.++
T Consensus 201 DLvS---KWmGE-------SEkLVknLFemAR--e~kPSIIFiDEiD 235 (439)
T KOG0739|consen 201 DLVS---KWMGE-------SEKLVKNLFEMAR--ENKPSIIFIDEID 235 (439)
T ss_pred HHHH---HHhcc-------HHHHHHHHHHHHH--hcCCcEEEeehhh
Confidence 1111 12221 1222333333332 5789999999984
No 336
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.86 E-value=0.11 Score=57.60 Aligned_cols=121 Identities=23% Similarity=0.290 Sum_probs=68.4
Q ss_pred HHHHHHhhCCcEEEEEEcCCCCCHHH-HHHHHhhchhhhccCCCcEEEEEecCCCC--HHHHHHHHHHHhCCCCCC----
Q 003515 178 ELKLELFKDGRQVIVVSAPGGYGKTT-LVKKLCKDDQVLGKFKDNIFFVTVSQTPN--VKGIVQKVYQHKGYAVPE---- 250 (814)
Q Consensus 178 ~l~~~L~~~~~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~~wv~v~~~~~--~~~~~~~i~~~l~~~~~~---- 250 (814)
+|++.+. +..||.|+|..|.|||| |++.+|.+ .|...- -|.+.++.. ...+.+.+.+.++.....
T Consensus 363 ~ll~~ir--~n~vvvivgETGSGKTTQl~QyL~ed-----GY~~~G-mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGY 434 (1042)
T KOG0924|consen 363 QLLSVIR--ENQVVVIVGETGSGKTTQLAQYLYED-----GYADNG-MIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGY 434 (1042)
T ss_pred HHHHHHh--hCcEEEEEecCCCCchhhhHHHHHhc-----ccccCC-eeeecCchHHHHHHHHHHHHHHhCCccccccce
Confidence 3444443 35799999999999986 88888874 332211 455566554 344566677776433211
Q ss_pred ------CCCh------HHHHHHHHHHh-cccCCCcEEEEEeCCCCCc--hH-H---HhhhcccCCCeEEEEEccc
Q 003515 251 ------FQTD------EDAINDLERLL-KPIRPEAILLVLDDVWSGS--ES-L---LQKFKFQLPYYKILVTSRS 306 (814)
Q Consensus 251 ------~~~~------~~~~~~l~~~l-~~l~~kr~LlVlDdv~~~~--~~-~---~~~~~~~~~gs~iivTtR~ 306 (814)
..+. ...--.|++.+ ...-.|--.||+|.+.+.. .+ + +......-..-|+||||-.
T Consensus 435 sIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSAT 509 (1042)
T KOG0924|consen 435 SIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSAT 509 (1042)
T ss_pred EEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeecc
Confidence 0010 01123355555 3334566689999986543 12 2 2222223346899999964
No 337
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.86 E-value=0.0019 Score=63.49 Aligned_cols=99 Identities=18% Similarity=0.237 Sum_probs=64.5
Q ss_pred cccccccceecccccccccCcccccccCCCCccEEecccCcCcCcCCccccCCCCccEEEeecCCCCCCCch--hccCCC
Q 003515 622 MKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPE--GIGKLV 699 (814)
Q Consensus 622 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~--~~~~l~ 699 (814)
+.+.++|++-+|+++.+ .+...++.|++|.|+-|.+.. ...+..+++|+.|+|..|. +..+.+ .+.+++
T Consensus 18 l~~vkKLNcwg~~L~DI------sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~-I~sldEL~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI------SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNC-IESLDELEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCCCccHH------HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCc
Confidence 44555666666655443 122367788888888776443 2336777888888888765 343332 466788
Q ss_pred CcCEeecccCCCCCCCcc-----ccCCCCCCCEEe
Q 003515 700 NLQMLTLASCTDLSALPD-----TIGNLSNLNFLD 729 (814)
Q Consensus 700 ~L~~L~L~~~~~~~~lp~-----~l~~L~~L~~L~ 729 (814)
+|++|.|..|+..+.-+. .+.-|++|+.||
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888888888887776654 245677888776
No 338
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.82 E-value=0.31 Score=55.90 Aligned_cols=45 Identities=11% Similarity=0.154 Sum_probs=37.3
Q ss_pred CCCCCCccchhHHHHHHHh--hCCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 166 PPVTPGLDVPLQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
...++|....++++.+.+. ......|.|+|..|+|||++|+.+++
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~ 241 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHY 241 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHH
Confidence 3567999999999888776 23345678999999999999999987
No 339
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.81 E-value=0.11 Score=55.19 Aligned_cols=44 Identities=14% Similarity=0.118 Sum_probs=36.3
Q ss_pred CCCCCccchhHHHHHHHh--hCCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 167 PVTPGLDVPLQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
+.++|+...+.++.+.+. .....-|.|+|..|+||+++|+.++.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 357999999998888776 33345688999999999999999985
No 340
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.79 E-value=0.024 Score=58.33 Aligned_cols=33 Identities=27% Similarity=0.505 Sum_probs=25.8
Q ss_pred HHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 177 QELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 177 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
..+++.+...+ +-+.++|+.|+|||++++....
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhc
Confidence 45566666654 4568999999999999998875
No 341
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.78 E-value=0.23 Score=48.57 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhh
Q 003515 189 QVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 189 ~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
++++|+|+.|.|||||.+.+.-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999998875
No 342
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.78 E-value=0.11 Score=49.23 Aligned_cols=82 Identities=15% Similarity=0.334 Sum_probs=49.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcccC
Q 003515 190 VIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIR 269 (814)
Q Consensus 190 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~l~ 269 (814)
++.|.|.+|+|||++|.++... ....++++.-.+.++. ++...|...-... +......+....+.+.++..+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~------~~~~~~y~at~~~~d~-em~~rI~~H~~~R-~~~w~t~E~~~~l~~~l~~~~ 72 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE------LGGPVTYIATAEAFDD-EMAERIARHRKRR-PAHWRTIETPRDLVSALKELD 72 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh------cCCCeEEEEccCcCCH-HHHHHHHHHHHhC-CCCceEeecHHHHHHHHHhcC
Confidence 3679999999999999988752 2224668877777655 3555544433222 222233333345555553322
Q ss_pred CCcEEEEEeCC
Q 003515 270 PEAILLVLDDV 280 (814)
Q Consensus 270 ~kr~LlVlDdv 280 (814)
+.-.+++|.+
T Consensus 73 -~~~~VLIDcl 82 (169)
T cd00544 73 -PGDVVLIDCL 82 (169)
T ss_pred -CCCEEEEEcH
Confidence 3337999986
No 343
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.77 E-value=0.17 Score=48.27 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
.-.+++|+|..|.|||||.+.++.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G 50 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLR 50 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 346899999999999999999986
No 344
>PRK03839 putative kinase; Provisional
Probab=94.75 E-value=0.023 Score=54.71 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 003515 190 VIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 190 vi~I~G~gGiGKTtLa~~v~~ 210 (814)
.|.|+|++|+||||+|+.+++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 345
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.68 E-value=0.61 Score=49.82 Aligned_cols=116 Identities=22% Similarity=0.285 Sum_probs=66.9
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCC--CHHHHHHHHHHHhCCCCCCC--------------
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTP--NVKGIVQKVYQHKGYAVPEF-------------- 251 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~--~~~~~~~~i~~~l~~~~~~~-------------- 251 (814)
+.||-.+|.-|.||||-|..+++ .++. ....+.-|++ +.+ ..-+-++.+.++.+.+....
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~--~lkk-~~~kvllVaa-D~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al 175 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAK--YLKK-KGKKVLLVAA-DTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAAL 175 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHH--HHHH-cCCceEEEec-ccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHH
Confidence 67899999999999998887776 3443 4444544443 222 23344555666654332211
Q ss_pred -------------------CChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc-hHHHhhhcccCCCeEEEEEcccc
Q 003515 252 -------------------QTDEDAINDLERLLKPIRPEAILLVLDDVWSGS-ESLLQKFKFQLPYYKILVTSRSV 307 (814)
Q Consensus 252 -------------------~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~-~~~~~~~~~~~~gs~iivTtR~~ 307 (814)
.-+++..+++.++-+.++....|+|+|-.--.+ ......|....+=+-||+|==+.
T Consensus 176 ~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIlTKlDG 251 (451)
T COG0541 176 EKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGITGVILTKLDG 251 (451)
T ss_pred HHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCceEEEEcccC
Confidence 112334455555555567777888888763322 22445565555556677775443
No 346
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.66 E-value=0.067 Score=57.32 Aligned_cols=44 Identities=25% Similarity=0.392 Sum_probs=34.4
Q ss_pred CCCCCccchhHHHHHHHhhC--------------CcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 167 PVTPGLDVPLQELKLELFKD--------------GRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
..++|.++.++.+...+... ..+-|.++|++|+|||++|+.+..
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~ 69 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK 69 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 45788888887776555521 136788999999999999999987
No 347
>PRK14527 adenylate kinase; Provisional
Probab=94.66 E-value=0.058 Score=52.54 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
...+|.|+|.+|+||||+|+.+++
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 348
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.64 E-value=0.063 Score=53.59 Aligned_cols=20 Identities=40% Similarity=0.514 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 003515 191 IVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 191 i~I~G~gGiGKTtLa~~v~~ 210 (814)
|.|+|++|+||||+|+.+++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999886
No 349
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.64 E-value=0.058 Score=52.35 Aligned_cols=43 Identities=33% Similarity=0.465 Sum_probs=29.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHH
Q 003515 190 VIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVK 234 (814)
Q Consensus 190 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 234 (814)
.|+|.|-||+||||+|..+.. ++...=...++-|+...+++..
T Consensus 2 kIaI~GKGG~GKTtiaalll~--~l~~~~~~~VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLK--RLLSKGGYNVLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHH--HHHhcCCceEEEEeCCCCCChH
Confidence 589999999999999988554 3332211236677776665544
No 350
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.61 E-value=0.11 Score=49.04 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=55.0
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCC--CCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHh
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQT--PNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL 265 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 265 (814)
-.+++|+|..|.|||||.+.++.. ...... -+++.-... .+..+.. ...++.. +..+..+...-.+.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G-~v~~~g~~~~~~~~~~~~---~~~i~~~-~qLS~G~~qrl~lar-- 95 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL---YKPDSG-EILVDGKEVSFASPRDAR---RAGIAMV-YQLSVGERQMVEIAR-- 95 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCe-EEEECCEECCcCCHHHHH---hcCeEEE-EecCHHHHHHHHHHH--
Confidence 468999999999999999999852 222333 334322111 1111111 1111111 112222222222333
Q ss_pred cccCCCcEEEEEeCCCCCch-----HHHhhhccc-CCCeEEEEEcccc
Q 003515 266 KPIRPEAILLVLDDVWSGSE-----SLLQKFKFQ-LPYYKILVTSRSV 307 (814)
Q Consensus 266 ~~l~~kr~LlVlDdv~~~~~-----~~~~~~~~~-~~gs~iivTtR~~ 307 (814)
.+-.++-++++|+.-..-+ .+...+... ..|..||++|.+.
T Consensus 96 -al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 142 (163)
T cd03216 96 -ALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142 (163)
T ss_pred -HHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3356778999998744321 233333322 2366788888764
No 351
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=0.32 Score=54.39 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
..+-|..+|++|.|||++|+++++
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAn 490 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALAN 490 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhh
Confidence 367789999999999999999998
No 352
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.61 E-value=0.13 Score=48.61 Aligned_cols=42 Identities=14% Similarity=0.253 Sum_probs=31.9
Q ss_pred CCCccchhHHHHHHHh--hCCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 169 TPGLDVPLQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 169 ~vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
+||....+.++++.+. .....-|.|+|..|+||+.+|+.+++
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 4788888888888776 23335567999999999999999997
No 353
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.60 E-value=0.05 Score=55.69 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=28.1
Q ss_pred HHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCC
Q 003515 182 ELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFK 219 (814)
Q Consensus 182 ~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 219 (814)
++...+..+|.|.|.+|.|||||...+.+ .......
T Consensus 98 ~~~~~~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~~ 133 (290)
T PRK10463 98 RFAARKQLVLNLVSSPGSGKTTLLTETLM--RLKDSVP 133 (290)
T ss_pred HHHhcCCeEEEEECCCCCCHHHHHHHHHH--HhccCCC
Confidence 33345688999999999999999999987 4444443
No 354
>PRK00625 shikimate kinase; Provisional
Probab=94.57 E-value=0.027 Score=53.51 Aligned_cols=21 Identities=33% Similarity=0.349 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 003515 190 VIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 190 vi~I~G~gGiGKTtLa~~v~~ 210 (814)
.|.++||+|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 355
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.56 E-value=0.15 Score=55.06 Aligned_cols=89 Identities=22% Similarity=0.281 Sum_probs=49.8
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhhchhhhc-cCCCcEEEEEecCCCCH--HHHHHHHHHHhCCCCCCCCChHHHHHHHHH
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLG-KFKDNIFFVTVSQTPNV--KGIVQKVYQHKGYAVPEFQTDEDAINDLER 263 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~~wv~v~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 263 (814)
..++|.++|..|+||||.+..++..-.... .-...+..+++. ++.. .+-+....+.++.+....... ..+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~----~~l~~ 247 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESF----KDLKE 247 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcH----HHHHH
Confidence 357999999999999999888876322211 123346566654 3332 233555555555543222222 33444
Q ss_pred HhcccCCCcEEEEEeCCC
Q 003515 264 LLKPIRPEAILLVLDDVW 281 (814)
Q Consensus 264 ~l~~l~~kr~LlVlDdv~ 281 (814)
.+..+ .+.-+|++|.+-
T Consensus 248 ~L~~~-~~~DlVLIDTaG 264 (388)
T PRK12723 248 EITQS-KDFDLVLVDTIG 264 (388)
T ss_pred HHHHh-CCCCEEEEcCCC
Confidence 44333 345688889874
No 356
>PRK04040 adenylate kinase; Provisional
Probab=94.55 E-value=0.029 Score=54.20 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhh
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
..+|+|+|++|+||||+++.+.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 357
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.54 E-value=0.063 Score=58.54 Aligned_cols=44 Identities=23% Similarity=0.413 Sum_probs=33.5
Q ss_pred CCCCCccchhHHHHHHHhh-------C---------CcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 167 PVTPGLDVPLQELKLELFK-------D---------GRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~-------~---------~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
..+||.+..++.+...+.. . ..+.+.++|++|+|||++|+.++.
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 4679998888877555421 0 125689999999999999999986
No 358
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.49 E-value=0.034 Score=53.93 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
.+.+|+|.|.+|.||||+|+.+++
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 359
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.45 E-value=0.12 Score=53.49 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
...+|+|.|..|+||||+|+.+..
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999987764
No 360
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.44 E-value=0.024 Score=49.18 Aligned_cols=20 Identities=50% Similarity=0.750 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 003515 191 IVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 191 i~I~G~gGiGKTtLa~~v~~ 210 (814)
|-|+|.+|+|||++|+.++.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999887
No 361
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.43 E-value=0.23 Score=52.65 Aligned_cols=88 Identities=18% Similarity=0.181 Sum_probs=49.0
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCC-CHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHh
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTP-NVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL 265 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 265 (814)
+.++++++|+.|+||||++..++.. .... ..++.+++..... ...+-+....+.++.......+..+ +...+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~--l~~~-g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~d----L~~al 277 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ--LLKQ-NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAE----LEEAV 277 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHc-CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHH----HHHHH
Confidence 3679999999999999999888763 2221 2346677764322 2334445555555543222223222 33333
Q ss_pred cccC--CCcEEEEEeCCC
Q 003515 266 KPIR--PEAILLVLDDVW 281 (814)
Q Consensus 266 ~~l~--~kr~LlVlDdv~ 281 (814)
+.++ +..=+|++|-.-
T Consensus 278 ~~l~~~~~~D~VLIDTAG 295 (407)
T PRK12726 278 QYMTYVNCVDHILIDTVG 295 (407)
T ss_pred HHHHhcCCCCEEEEECCC
Confidence 2222 344577888763
No 362
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.43 E-value=0.19 Score=59.56 Aligned_cols=43 Identities=9% Similarity=0.179 Sum_probs=35.8
Q ss_pred CCCCccchhHHHHHHHh--hCCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 168 VTPGLDVPLQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 168 ~~vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
.++|+...+..+.+.+. ......|.|+|..|+|||++|+.+++
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~ 421 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHN 421 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHH
Confidence 57999998888877666 23345788999999999999999987
No 363
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.40 E-value=0.15 Score=51.43 Aligned_cols=48 Identities=17% Similarity=0.382 Sum_probs=34.1
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHH
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKV 240 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i 240 (814)
..++.|+|.+|+|||++|.++... -.+. ...++|++..+. ..++.+.+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~-~~~~--g~~~~y~~~e~~--~~~~~~~~ 72 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYG-ALKQ--GKKVYVITTENT--SKSYLKQM 72 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHH-HHhC--CCEEEEEEcCCC--HHHHHHHH
Confidence 578999999999999999998652 2233 334779988654 45555553
No 364
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.39 E-value=0.17 Score=55.66 Aligned_cols=85 Identities=20% Similarity=0.291 Sum_probs=44.7
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhh-ccCCCcEEEEEecCCCC--HHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVL-GKFKDNIFFVTVSQTPN--VKGIVQKVYQHKGYAVPEFQTDEDAINDLERL 264 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~~wv~v~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 264 (814)
.+++.++|++|+||||++..++. ... .+-..++..++... +. ..+-+....+.++..........+ +...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~--~~~~~~~g~~V~li~~D~-~r~~a~eqL~~~a~~~~vp~~~~~~~~~----l~~~ 293 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA--RYALLYGKKKVALITLDT-YRIGAVEQLKTYAKIMGIPVEVVYDPKE----LAKA 293 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCeEEEEECCc-cHHHHHHHHHHHHHHhCCceEccCCHHh----HHHH
Confidence 35899999999999998887765 222 11122366676533 22 122233333444433322222222 3333
Q ss_pred hcccCCCcEEEEEeCC
Q 003515 265 LKPIRPEAILLVLDDV 280 (814)
Q Consensus 265 l~~l~~kr~LlVlDdv 280 (814)
+..+. ..=+||+|..
T Consensus 294 l~~~~-~~DlVlIDt~ 308 (424)
T PRK05703 294 LEQLR-DCDVILIDTA 308 (424)
T ss_pred HHHhC-CCCEEEEeCC
Confidence 32223 3467888965
No 365
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.37 E-value=0.021 Score=50.31 Aligned_cols=27 Identities=37% Similarity=0.518 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhhchhhhccCC
Q 003515 191 IVVSAPGGYGKTTLVKKLCKDDQVLGKFK 219 (814)
Q Consensus 191 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 219 (814)
|.|+|.+|+||||+|+.++. .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999997 5666664
No 366
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=0.41 Score=54.39 Aligned_cols=91 Identities=19% Similarity=0.281 Sum_probs=57.1
Q ss_pred CCCCCccchhHHHHHHHh---------hCC---cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHH
Q 003515 167 PVTPGLDVPLQELKLELF---------KDG---RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVK 234 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~---------~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 234 (814)
+++=|.++.+.+|.+-+. ..+ ..=|.++|++|.|||-||++|+. .|. .-|++|..+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVAT------Ecs--L~FlSVKGP---- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVAT------ECS--LNFLSVKGP---- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHh------hce--eeEEeecCH----
Confidence 455577777777777654 222 23478999999999999999986 243 447777543
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcc-cCCCcEEEEEeCCCC
Q 003515 235 GIVQKVYQHKGYAVPEFQTDEDAINDLERLLKP-IRPEAILLVLDDVWS 282 (814)
Q Consensus 235 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-l~~kr~LlVlDdv~~ 282 (814)
+ ++...-+. ++ +.+++.+++ -.-++|.|+||.+++
T Consensus 740 E----LLNMYVGq-----SE----~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 E----LLNMYVGQ-----SE----ENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred H----HHHHHhcc-----hH----HHHHHHHHHhhccCCeEEEeccccc
Confidence 2 22221111 12 234444422 257899999999854
No 367
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.36 E-value=0.3 Score=45.91 Aligned_cols=117 Identities=19% Similarity=0.195 Sum_probs=59.7
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecC---CCCHHHHHHHHH---HHhCCCCC-CCCChHHHHHH
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQ---TPNVKGIVQKVY---QHKGYAVP-EFQTDEDAIND 260 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~---~~~~~~~~~~i~---~~l~~~~~-~~~~~~~~~~~ 260 (814)
...|-|++..|.||||.|..++-. -....+. +..+.+-. .......+..+. .+.+.... ...........
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~r-a~~~g~~--v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALR-ALGHGKK--VGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHH-HHHCCCe--EEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHH
Confidence 357888888999999999777652 2223333 43343322 233334443320 00111100 00111111111
Q ss_pred HHHHh----cccC-CCcEEEEEeCCC-------CCchHHHhhhcccCCCeEEEEEcccc
Q 003515 261 LERLL----KPIR-PEAILLVLDDVW-------SGSESLLQKFKFQLPYYKILVTSRSV 307 (814)
Q Consensus 261 l~~~l----~~l~-~kr~LlVlDdv~-------~~~~~~~~~~~~~~~gs~iivTtR~~ 307 (814)
.++.+ +.+. ++-=|||||.+- -..+.+.+.+....++..||+|-|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 22222 3333 445599999972 22244666665555678999999986
No 368
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.36 E-value=0.32 Score=52.67 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhh
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
-..++|+|++|.||||||+.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 46899999999999999999853
No 369
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.32 E-value=0.059 Score=54.13 Aligned_cols=48 Identities=23% Similarity=0.528 Sum_probs=31.2
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHH
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQK 239 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~ 239 (814)
..++.|.|.+|+|||++|.++... -.+ .+...++|++..++ ..++.+.
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~-~~~-~~ge~vlyvs~ee~--~~~l~~~ 66 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYN-GLK-NFGEKVLYVSFEEP--PEELIEN 66 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH-HHH-HHT--EEEEESSS---HHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHH-hhh-hcCCcEEEEEecCC--HHHHHHH
Confidence 568999999999999999887652 222 22334778887554 3444444
No 370
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.32 E-value=0.07 Score=55.58 Aligned_cols=84 Identities=20% Similarity=0.229 Sum_probs=49.6
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----CCChHHHHHHHH
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPE-----FQTDEDAINDLE 262 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 262 (814)
.+++-|+|..|+||||||..+.. ..... +..++|++....++..- ++.++.+... ....++....+.
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia--~~q~~-g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIA--EAQKQ-GGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH--HHHHT-T-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHH--hhhcc-cceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHH
Confidence 46899999999999999988886 33332 34477999887766543 3444433211 123455555555
Q ss_pred HHhcccCCCcEEEEEeCCC
Q 003515 263 RLLKPIRPEAILLVLDDVW 281 (814)
Q Consensus 263 ~~l~~l~~kr~LlVlDdv~ 281 (814)
.+++ .+..-++|+|-|-
T Consensus 125 ~lir--sg~~~lVVvDSv~ 141 (322)
T PF00154_consen 125 QLIR--SGAVDLVVVDSVA 141 (322)
T ss_dssp HHHH--TTSESEEEEE-CT
T ss_pred HHhh--cccccEEEEecCc
Confidence 5553 3444588999873
No 371
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.31 E-value=0.014 Score=34.04 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=10.8
Q ss_pred CCEEeccCCCCCCcChhhhc
Q 003515 749 LKTLCLKGCSMFELPSSILN 768 (814)
Q Consensus 749 L~~L~l~~~~l~~lp~~l~~ 768 (814)
|++|++++|.++.+|+++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 55555555555555554443
No 372
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.30 E-value=0.13 Score=56.14 Aligned_cols=88 Identities=20% Similarity=0.319 Sum_probs=48.6
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHh-----CCCCCCCCC------hHH
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHK-----GYAVPEFQT------DED 256 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l-----~~~~~~~~~------~~~ 256 (814)
-..++|+|..|+|||||++.+.... . -+.++++..-....++.++....+... ..-...... ...
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~---~-pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD---A-FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---C-CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 4579999999999999999887521 1 122344443334445555444333322 110111111 111
Q ss_pred HHHHHHHHhcccCCCcEEEEEeCC
Q 003515 257 AINDLERLLKPIRPEAILLVLDDV 280 (814)
Q Consensus 257 ~~~~l~~~l~~l~~kr~LlVlDdv 280 (814)
..-.+.+++. -+++.+|+++||+
T Consensus 241 ~a~~iAEyfr-d~G~~Vll~~Dsl 263 (450)
T PRK06002 241 TATAIAEYFR-DRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHH-HcCCCEEEeccch
Confidence 2223444442 1699999999998
No 373
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.28 E-value=0.39 Score=48.08 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhh
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
-.+++|+|+.|.|||||.+.+.-
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999975
No 374
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.26 E-value=0.22 Score=50.08 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=28.2
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecC
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQ 229 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~ 229 (814)
-.++.|.|.+|+||||+|.++... -... ...++|++...
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~-~~~~--g~~~~~is~e~ 58 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYK-GLRD--GDPVIYVTTEE 58 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHH-HHhc--CCeEEEEEccC
Confidence 578999999999999999887652 1222 22467887744
No 375
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.22 E-value=0.19 Score=55.72 Aligned_cols=86 Identities=27% Similarity=0.358 Sum_probs=45.5
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccC-CCcEEEEEecCCCC--HHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF-KDNIFFVTVSQTPN--VKGIVQKVYQHKGYAVPEFQTDEDAINDLERL 264 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~~wv~v~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 264 (814)
..+|+|+|.+|+||||++..+.. ...... ..++..++.. .+. ..+.+....+.++......... ..+...
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa--~la~~~~gkkVaLIdtD-tyRigA~EQLk~ya~iLgv~v~~a~d~----~~L~~a 422 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ--RFAAQHAPRDVALVTTD-TQRVGGREQLHSYGRQLGIAVHEADSA----ESLLDL 422 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCceEEEecc-cccccHHHHHHHhhcccCceeEecCcH----HHHHHH
Confidence 57999999999999999988876 332222 2235555542 222 2222333333333322221122 233344
Q ss_pred hcccCCCcEEEEEeCCC
Q 003515 265 LKPIRPEAILLVLDDVW 281 (814)
Q Consensus 265 l~~l~~kr~LlVlDdv~ 281 (814)
++.+.+ .=+||+|..-
T Consensus 423 L~~l~~-~DLVLIDTaG 438 (559)
T PRK12727 423 LERLRD-YKLVLIDTAG 438 (559)
T ss_pred HHHhcc-CCEEEecCCC
Confidence 433333 4588889874
No 376
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.20 E-value=0.12 Score=50.73 Aligned_cols=111 Identities=13% Similarity=0.206 Sum_probs=56.9
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCC---ChHHHHHHHHHH
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQ---TDEDAINDLERL 264 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~l~~~ 264 (814)
.+++.|.|..|.||||+.+.+.... +..+..+ ++.... .. -.+...|...++....... .-.....++...
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~~G~---~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~i 102 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQIGC---FVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYI 102 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHHcCC---Ccchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHH
Confidence 4789999999999999998886532 1111111 221111 11 1223333333332211111 112223334444
Q ss_pred hcccCCCcEEEEEeCCCCCch---------HHHhhhcccCCCeEEEEEcccc
Q 003515 265 LKPIRPEAILLVLDDVWSGSE---------SLLQKFKFQLPYYKILVTSRSV 307 (814)
Q Consensus 265 l~~l~~kr~LlVlDdv~~~~~---------~~~~~~~~~~~gs~iivTtR~~ 307 (814)
+. +..++-|+++|......+ .++..+. ..|+.+|++|-+.
T Consensus 103 l~-~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~ 151 (204)
T cd03282 103 LD-YADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFR 151 (204)
T ss_pred HH-hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChH
Confidence 43 245678999999844321 1223332 2378899999864
No 377
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.3 Score=55.45 Aligned_cols=123 Identities=13% Similarity=0.177 Sum_probs=69.3
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHh-c
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL-K 266 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~ 266 (814)
.+.+.++|++|.|||.||+++++ .....| +.+... + ++... ..+....+++.+ .
T Consensus 276 ~~giLl~GpPGtGKT~lAkava~--~~~~~f------i~v~~~----~----l~sk~---------vGesek~ir~~F~~ 330 (494)
T COG0464 276 PKGVLLYGPPGTGKTLLAKAVAL--ESRSRF------ISVKGS----E----LLSKW---------VGESEKNIRELFEK 330 (494)
T ss_pred CCeeEEECCCCCCHHHHHHHHHh--hCCCeE------EEeeCH----H----Hhccc---------cchHHHHHHHHHHH
Confidence 56789999999999999999998 333333 333221 1 11110 111123334444 2
Q ss_pred ccCCCcEEEEEeCCCCCc-----------hHHHhhhcc----c--CCCeEEEEEccccc-------c--CCCCccccCCC
Q 003515 267 PIRPEAILLVLDDVWSGS-----------ESLLQKFKF----Q--LPYYKILVTSRSVF-------P--QFGSGYDLKPL 320 (814)
Q Consensus 267 ~l~~kr~LlVlDdv~~~~-----------~~~~~~~~~----~--~~gs~iivTtR~~~-------~--~~~~~~~l~~L 320 (814)
..+..++.|++|+++... ......+.. . ..+..||-||.... . .....+.++.-
T Consensus 331 A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~p 410 (494)
T COG0464 331 ARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLP 410 (494)
T ss_pred HHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCC
Confidence 226789999999984211 112222221 1 12333444554331 1 22337888889
Q ss_pred CHHHHHHHHHHHccc
Q 003515 321 NDEAARTLFRYSANL 335 (814)
Q Consensus 321 ~~~~~~~Lf~~~a~~ 335 (814)
+.++..+.|+.+...
T Consensus 411 d~~~r~~i~~~~~~~ 425 (494)
T COG0464 411 DLEERLEIFKIHLRD 425 (494)
T ss_pred CHHHHHHHHHHHhcc
Confidence 999999999988743
No 378
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.18 E-value=0.15 Score=51.78 Aligned_cols=93 Identities=13% Similarity=0.104 Sum_probs=55.4
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhh--hccCCCcEEEEEecCCC-CHHHHHHHHHHHhCCCC-------CCCCCh---
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQV--LGKFKDNIFFVTVSQTP-NVKGIVQKVYQHKGYAV-------PEFQTD--- 254 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~--- 254 (814)
-..++|+|-.|+|||+|+..+.++..+ +.+-+. ++++-+++.. ...++..++.+.-.... .+.+..
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v-~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFA-VVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCE-EEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 456899999999999999998875331 112233 5688887654 46666666665421110 011111
Q ss_pred --HHHHHHHHHHhcccCCCcEEEEEeCCC
Q 003515 255 --EDAINDLERLLKPIRPEAILLVLDDVW 281 (814)
Q Consensus 255 --~~~~~~l~~~l~~l~~kr~LlVlDdv~ 281 (814)
....-.+.+++..-+++++|+++||+-
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 112223455552224899999999983
No 379
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.17 E-value=0.12 Score=53.88 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=44.1
Q ss_pred CCCCCCCCCccchhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHH
Q 003515 163 PDPPPVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIV 237 (814)
Q Consensus 163 ~~~~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~ 237 (814)
|..++.++=..+....++..+... +.|.|.|.+|+||||+|+.++. +.... .+.|.++...+..++.
T Consensus 41 p~~d~~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~--~l~~~----~~rV~~~~~l~~~Dli 107 (327)
T TIGR01650 41 PDIDPAYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAA--RLNWP----CVRVNLDSHVSRIDLV 107 (327)
T ss_pred CCCCCCccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHH--HHCCC----eEEEEecCCCChhhcC
Confidence 333444455555666677777543 4689999999999999999987 44322 3466666665554443
No 380
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.16 E-value=0.18 Score=48.10 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhh
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
-.+++|+|..|.|||||.+.++.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999985
No 381
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.14 E-value=0.083 Score=52.53 Aligned_cols=61 Identities=23% Similarity=0.322 Sum_probs=36.2
Q ss_pred hhHHHHHHHh--hCCcEEEEEEcCCCCCHHHHHHHHhhchhhhc-cCCCcEEEEEecCCCCHHHHH
Q 003515 175 PLQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLG-KFKDNIFFVTVSQTPNVKGIV 237 (814)
Q Consensus 175 ~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~~wv~v~~~~~~~~~~ 237 (814)
+..++++.+. ..+..+|+|.|.||+|||||..++.. ..+. ....+|+-|+-|.+++--.++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~--~~~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIR--ELRERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHH--HHHHTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHH--HHhhcCCceEEEEECCCCCCCCCccc
Confidence 3455556555 34578999999999999999988877 3332 344445555556666654444
No 382
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.12 E-value=0.1 Score=55.98 Aligned_cols=45 Identities=24% Similarity=0.372 Sum_probs=36.0
Q ss_pred CCCCCCccchhHHHHHHHhhC--------------CcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 166 PPVTPGLDVPLQELKLELFKD--------------GRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
...++|.++.++.+..++... ..+-|.++|++|+|||+||+.+..
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk 72 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK 72 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 346789998888887777420 136789999999999999999987
No 383
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.11 E-value=0.069 Score=47.89 Aligned_cols=37 Identities=30% Similarity=0.381 Sum_probs=27.8
Q ss_pred hhHHHHHHHhh--CCcEEEEEEcCCCCCHHHHHHHHhhc
Q 003515 175 PLQELKLELFK--DGRQVIVVSAPGGYGKTTLVKKLCKD 211 (814)
Q Consensus 175 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~ 211 (814)
+.+++-+.|.. ....+|.+.|.-|.||||+++.+++.
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 44555555542 23568999999999999999999873
No 384
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.10 E-value=0.11 Score=49.15 Aligned_cols=83 Identities=18% Similarity=0.297 Sum_probs=44.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcccC
Q 003515 190 VIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIR 269 (814)
Q Consensus 190 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~l~ 269 (814)
++.|.|.+|+||||+|..+... +...++++...... ..+....|..............+. ...+.+.++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~------~~~~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~-~~~l~~~i~~~~ 74 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ------SGLQVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEE-PLDLAELLRADA 74 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH------cCCCcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecc-cccHHHHHHhhc
Confidence 6899999999999999988762 22224455544433 345556665443332222111111 122444442211
Q ss_pred CCcEEEEEeCC
Q 003515 270 PEAILLVLDDV 280 (814)
Q Consensus 270 ~kr~LlVlDdv 280 (814)
.+.-++++|.+
T Consensus 75 ~~~~~VlID~L 85 (170)
T PRK05800 75 APGRCVLVDCL 85 (170)
T ss_pred CCCCEEEehhH
Confidence 22337888986
No 385
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.09 E-value=0.043 Score=52.51 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhh
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
...|.|+|++|+||||+|+.+++
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 386
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.09 E-value=0.13 Score=56.35 Aligned_cols=92 Identities=14% Similarity=0.116 Sum_probs=53.6
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCC-CHHHHHHHHHHHhCCCC-------CCCCCh-----
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTP-NVKGIVQKVYQHKGYAV-------PEFQTD----- 254 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~----- 254 (814)
-..++|+|.+|+|||||+.++.+... +.+-+. ++++-+++.. .+.++...+...-.... .+.+..
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv-~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGS-SVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hhCCCE-EEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 46789999999999999988887322 223344 5566666543 45666666654321110 011111
Q ss_pred HHHHHHHHHHhcccCCCcEEEEEeCCC
Q 003515 255 EDAINDLERLLKPIRPEAILLVLDDVW 281 (814)
Q Consensus 255 ~~~~~~l~~~l~~l~~kr~LlVlDdv~ 281 (814)
....-.+.+++..-+++++|+++||+-
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccch
Confidence 111223344442224899999999983
No 387
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.07 E-value=0.2 Score=54.83 Aligned_cols=91 Identities=13% Similarity=0.198 Sum_probs=53.4
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCC-CHHHHHHHHHHHhCCCC-------CCCCChH----
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTP-NVKGIVQKVYQHKGYAV-------PEFQTDE---- 255 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~---- 255 (814)
-..++|+|.+|+|||||+.++... .....+..++++-+++.. .+.+++..+...-.... .+.+...
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~--~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINN--IAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 467899999999999999988763 222212335577776654 45666666665421110 0111111
Q ss_pred -HHHHHHHHHhcccCCCcEEEEEeCC
Q 003515 256 -DAINDLERLLKPIRPEAILLVLDDV 280 (814)
Q Consensus 256 -~~~~~l~~~l~~l~~kr~LlVlDdv 280 (814)
...-.+.+++..-+++++||++||+
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecch
Confidence 1122244444222789999999998
No 388
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.07 E-value=0.034 Score=54.56 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 003515 190 VIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 190 vi~I~G~gGiGKTtLa~~v~~ 210 (814)
+|+|.|.+|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 389
>PRK05439 pantothenate kinase; Provisional
Probab=94.07 E-value=0.33 Score=50.55 Aligned_cols=44 Identities=16% Similarity=0.031 Sum_probs=29.8
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhhchhhhcc-CCCcEEEEEecCCCC
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGK-FKDNIFFVTVSQTPN 232 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~~wv~v~~~~~ 232 (814)
..-+|+|.|.+|+||||+|+.+.. ..... ....+.-++...-..
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~ 129 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLY 129 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEecccccc
Confidence 467999999999999999998876 33322 122354555554443
No 390
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.07 E-value=0.33 Score=49.74 Aligned_cols=39 Identities=26% Similarity=0.402 Sum_probs=29.1
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecC
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQ 229 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~ 229 (814)
..++.|.|.+|+|||++|.++... -.+. ...+++++..+
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~-~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVT-QASR--GNPVLFVTVES 74 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH-HHhC--CCcEEEEEecC
Confidence 578999999999999999987652 2222 33467888864
No 391
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.07 E-value=0.041 Score=52.96 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhh
Q 003515 189 QVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 189 ~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
.+++|+|++|+|||||++.+..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 392
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.05 E-value=0.26 Score=54.54 Aligned_cols=87 Identities=18% Similarity=0.193 Sum_probs=45.3
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCC--HHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHh
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPN--VKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL 265 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 265 (814)
.+|++++|..|+||||++..++.....+..- ..+..+.. +.+. ..+-+....+.++..........+... .+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-~kV~LI~~-Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~----aL 329 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGA-SKVALLTT-DSYRIGGHEQLRIYGKILGVPVHAVKDAADLRL----AL 329 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCC-CeEEEEeC-CccchhHHHHHHHHHHHhCCCeeccCCchhHHH----HH
Confidence 4699999999999999998888622222111 13555554 3332 333344445555543322222222221 12
Q ss_pred cccCCCcEEEEEeCCC
Q 003515 266 KPIRPEAILLVLDDVW 281 (814)
Q Consensus 266 ~~l~~kr~LlVlDdv~ 281 (814)
..++++ -.+++|-.-
T Consensus 330 ~~L~d~-d~VLIDTaG 344 (484)
T PRK06995 330 SELRNK-HIVLIDTIG 344 (484)
T ss_pred HhccCC-CeEEeCCCC
Confidence 233444 366777753
No 393
>PRK14532 adenylate kinase; Provisional
Probab=94.03 E-value=0.21 Score=48.39 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 003515 191 IVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 191 i~I~G~gGiGKTtLa~~v~~ 210 (814)
|.|.|++|+||||+|+.+++
T Consensus 3 i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77899999999999999876
No 394
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.03 E-value=0.074 Score=49.37 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=29.4
Q ss_pred chhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhc
Q 003515 174 VPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKD 211 (814)
Q Consensus 174 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 211 (814)
+.+++|.+.|.. ++++++|..|+|||||+..+..+
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhh
Confidence 456788777753 79999999999999999999873
No 395
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.02 E-value=0.083 Score=55.11 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=39.4
Q ss_pred CCCCCCccchhHHHHHHHh------hCCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 166 PPVTPGLDVPLQELKLELF------KDGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
...++|.++.++++++.+. +..-+|+.++|+.|.||||||..+.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999997 23468999999999999999998875
No 396
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.02 E-value=0.036 Score=53.25 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 003515 190 VIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 190 vi~I~G~gGiGKTtLa~~v~~ 210 (814)
+|+|.|.+|+||||+|+.+..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~ 21 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQR 21 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 397
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.01 E-value=0.035 Score=53.61 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 003515 190 VIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 190 vi~I~G~gGiGKTtLa~~v~~ 210 (814)
+|.|+|++|+||||+|+.+++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999886
No 398
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=93.99 E-value=0.08 Score=53.10 Aligned_cols=78 Identities=15% Similarity=0.268 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHH-HHhhhccCCChhHHHHHHHHHHhhHHHhhhccC
Q 003515 9 ALLGAVFGELLRAVSEAKDKAVMFKDLLEQLESTLQNSTPMIKEI-EKLNQVLDLPKHETDTLIEMMRRGEHLVHKCSR 86 (814)
Q Consensus 9 a~~~~v~~kl~~~l~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a-e~~~~~~~~~~~wl~~l~~~~~d~ed~ld~~~~ 86 (814)
+.+..++++|-+...........++.+++.++.+++.+|.||+.. ++.....+.......++...+|++|.++|-|..
T Consensus 296 GyVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi~ 374 (402)
T PF12061_consen 296 GYVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACIS 374 (402)
T ss_pred cHHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhhc
Confidence 346667777777777777777788999999999999999999975 554444455788999999999999999998865
No 399
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=93.96 E-value=2.4 Score=43.79 Aligned_cols=62 Identities=10% Similarity=0.071 Sum_probs=38.7
Q ss_pred cCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEccccccCCC------CccccCCCCHHHHHHHHH
Q 003515 268 IRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVFPQFG------SGYDLKPLNDEAARTLFR 330 (814)
Q Consensus 268 l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~~~~~------~~~~l~~L~~~~~~~Lf~ 330 (814)
..+++-++|+||+..-... ++..+....+++.+|++|.+...-.. ..+.+.. +.++..+.+.
T Consensus 101 ~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 101 YEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred ccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 3577789999999766543 55556655666777777766532222 2456655 5565555554
No 400
>PRK13947 shikimate kinase; Provisional
Probab=93.94 E-value=0.042 Score=52.39 Aligned_cols=21 Identities=38% Similarity=0.393 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 003515 190 VIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 190 vi~I~G~gGiGKTtLa~~v~~ 210 (814)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999987
No 401
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.91 E-value=0.019 Score=54.51 Aligned_cols=42 Identities=24% Similarity=0.483 Sum_probs=29.8
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhh-ccCCCcEEEEEecCCCC
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVL-GKFKDNIFFVTVSQTPN 232 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~~wv~v~~~~~ 232 (814)
..++.+.|+.|+|||.||+.+.+ .+. +.... ..-++.++...
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~-~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERP-LIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCE-EEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccc-hHHHhhhcccc
Confidence 45788999999999999999997 444 33333 45666655444
No 402
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.90 E-value=0.16 Score=48.57 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhh
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
-.+++|+|..|.|||||.+.++.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G 48 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILG 48 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999986
No 403
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.88 E-value=0.15 Score=54.93 Aligned_cols=23 Identities=43% Similarity=0.671 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhh
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
..++.++|.+|+||||++..++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998886
No 404
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.87 E-value=0.1 Score=54.52 Aligned_cols=49 Identities=16% Similarity=0.350 Sum_probs=35.6
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHH
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQK 239 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~ 239 (814)
.+++.+.|.||+||||+|.+.+- ....... +++-|++....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~-kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGK-KVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCC-cEEEEEeCCCCchHhhhcc
Confidence 47899999999999999988654 4444443 3778877766666665544
No 405
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=93.86 E-value=0.11 Score=56.13 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=28.1
Q ss_pred hHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 176 LQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 176 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
.+.+++.+.......+.|.|.||.|||+|.+++.+
T Consensus 10 ~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~ 44 (364)
T PF05970_consen 10 FDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIID 44 (364)
T ss_pred HHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHH
Confidence 34455555556677889999999999999999987
No 406
>PRK06217 hypothetical protein; Validated
Probab=93.86 E-value=0.044 Score=52.97 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 003515 190 VIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 190 vi~I~G~gGiGKTtLa~~v~~ 210 (814)
.|.|.|.+|+||||+|+++.+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~ 23 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAE 23 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 407
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.85 E-value=0.0053 Score=60.46 Aligned_cols=100 Identities=18% Similarity=0.215 Sum_probs=64.0
Q ss_pred CCCCcEEEeecccccCcccccccccCCCCCCCEEEecCCCCCCc-cccccccccccceecccccccccCcccccccCCCC
Q 003515 574 MDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSL-TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPN 652 (814)
Q Consensus 574 l~~Lr~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 652 (814)
+.+.+.|++.++|.. ..+.+.+|+.|+.|.|+-|+++.+ +...|++|+.|.|..|.+..+... ....++|+
T Consensus 18 l~~vkKLNcwg~~L~-----DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL---~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-----DISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDEL---EYLKNLPS 89 (388)
T ss_pred HHHhhhhcccCCCcc-----HHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHH---HHHhcCch
Confidence 334455566665432 223356778888888888888877 556778888888887766544221 23346788
Q ss_pred ccEEecccCcCcCcCCcc-----ccCCCCccEEE
Q 003515 653 LLEIDIDYCNDLIELPDG-----LCDIVSIKKLR 681 (814)
Q Consensus 653 L~~L~L~~~~~~~~lp~~-----i~~l~~L~~L~ 681 (814)
|+.|-|..|+.-+.-+.. +.-|++|+.||
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888888777766554432 34567777775
No 408
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.84 E-value=0.057 Score=51.76 Aligned_cols=24 Identities=25% Similarity=0.381 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
...+|+|+|.+|+||||+|+.+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 409
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.82 E-value=0.18 Score=54.35 Aligned_cols=85 Identities=16% Similarity=0.332 Sum_probs=47.3
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCC-ChHHHHHHHHHHhc
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQ-TDEDAINDLERLLK 266 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~ 266 (814)
-.++.|.|.+|+|||||+.+++. ..... ...++|++..+. ..++. .-++.++....... ......+.+.+.++
T Consensus 82 GslvLI~G~pG~GKStLllq~a~--~~a~~-g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAA--RLAKR-GGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH--HHHhc-CCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 46899999999999999999886 33222 234778876543 33332 22344543322110 00111223333332
Q ss_pred ccCCCcEEEEEeCC
Q 003515 267 PIRPEAILLVLDDV 280 (814)
Q Consensus 267 ~l~~kr~LlVlDdv 280 (814)
+.+.-+||+|.+
T Consensus 156 --~~~~~lVVIDSI 167 (372)
T cd01121 156 --ELKPDLVIIDSI 167 (372)
T ss_pred --hcCCcEEEEcch
Confidence 345668889987
No 410
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.79 E-value=0.05 Score=48.58 Aligned_cols=39 Identities=28% Similarity=0.404 Sum_probs=28.5
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHH
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVK 234 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 234 (814)
.+-|.|.|-+|+||||+|.+++. .+.. -|+++|+-....
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae------~~~~--~~i~isd~vkEn 45 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAE------KTGL--EYIEISDLVKEN 45 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHH------HhCC--ceEehhhHHhhh
Confidence 34588999999999999998885 2333 388887644333
No 411
>PF13245 AAA_19: Part of AAA domain
Probab=93.79 E-value=0.1 Score=41.79 Aligned_cols=24 Identities=42% Similarity=0.735 Sum_probs=18.2
Q ss_pred CcEEEEEEcCCCCCHHH-HHHHHhh
Q 003515 187 GRQVIVVSAPGGYGKTT-LVKKLCK 210 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTt-La~~v~~ 210 (814)
+.+++.|.|.+|.|||+ +++.+.+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45778899999999995 5555554
No 412
>PRK14528 adenylate kinase; Provisional
Probab=93.78 E-value=0.12 Score=49.88 Aligned_cols=22 Identities=41% Similarity=0.659 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhh
Q 003515 189 QVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 189 ~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
+.|.|.|++|+||||+|+.+..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~ 23 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCE 23 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999876
No 413
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.77 E-value=0.21 Score=56.15 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=20.2
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhh
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
-..|+|+|+.|+|||||.+.+..
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g 370 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAG 370 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 35789999999999999999954
No 414
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.74 E-value=0.049 Score=52.15 Aligned_cols=22 Identities=18% Similarity=0.480 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhh
Q 003515 189 QVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 189 ~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
++|.+.|++|+||||+|+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 415
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.74 E-value=0.5 Score=55.71 Aligned_cols=105 Identities=15% Similarity=0.265 Sum_probs=62.2
Q ss_pred CCCCCccchhHHHHHHHhh------C--CcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHH
Q 003515 167 PVTPGLDVPLQELKLELFK------D--GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQ 238 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~ 238 (814)
..++|-++.+..|.+.+.. + ...++.+.|+.|+|||-||++++. -+-+..+. .+-++.++ ...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~-~IriDmse------~~e 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEEN-FIRLDMSE------FQE 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccc-eEEechhh------hhh
Confidence 3567888888888877762 1 356788999999999999999987 45444443 33333333 222
Q ss_pred HHHHHhCCCCCCCCChHHHHHHHHHHhcccCCCcE-EEEEeCCCCCchH
Q 003515 239 KVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAI-LLVLDDVWSGSES 286 (814)
Q Consensus 239 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~kr~-LlVlDdv~~~~~~ 286 (814)
...+.+..+..- ..+...+|.+.+ +.++| +|+||||......
T Consensus 633 --vskligsp~gyv-G~e~gg~Lteav---rrrP~sVVLfdeIEkAh~~ 675 (898)
T KOG1051|consen 633 --VSKLIGSPPGYV-GKEEGGQLTEAV---KRRPYSVVLFEEIEKAHPD 675 (898)
T ss_pred --hhhccCCCcccc-cchhHHHHHHHH---hcCCceEEEEechhhcCHH
Confidence 233322222221 122233444444 55655 6678999776654
No 416
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.74 E-value=0.017 Score=54.45 Aligned_cols=118 Identities=20% Similarity=0.225 Sum_probs=57.5
Q ss_pred cCCccccCCCCccEEEeecCCCCCCCchhccCCCCcCEeecccCCCCCCCc-cccC-CCCCCCEEeccCCCCCCcc-chh
Q 003515 666 ELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALP-DTIG-NLSNLNFLDISECLNIQEL-PER 742 (814)
Q Consensus 666 ~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp-~~l~-~L~~L~~L~l~~~~~~~~l-p~~ 742 (814)
++|.....-..++.+|-+++.+..+=-+.+.+++.++.|.+.+|....... .-++ -.++|+.|+|++|+.++.- -..
T Consensus 92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~ 171 (221)
T KOG3864|consen 92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC 171 (221)
T ss_pred cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH
Confidence 444432223457777777765544444456667777777777776543221 1111 2245555555555544321 123
Q ss_pred hcCCCCCCEEeccCCCCCCcChhhhcCCCCCEEEcCCchhhhhHhhhhcCCCcEEEeec
Q 003515 743 IGELCSLKTLCLKGCSMFELPSSILNLENLEVVKCDEETAYQWEYFQLGQAKFRIEVIQ 801 (814)
Q Consensus 743 l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~i~~~~ 801 (814)
+.++++|+.|.+++-+.. .+....-..+..++|++.|....
T Consensus 172 L~~lknLr~L~l~~l~~v------------------~~~e~~~~~Le~aLP~c~I~~~d 212 (221)
T KOG3864|consen 172 LLKLKNLRRLHLYDLPYV------------------ANLELVQRQLEEALPKCDIVGPD 212 (221)
T ss_pred HHHhhhhHHHHhcCchhh------------------hchHHHHHHHHHhCcccceechh
Confidence 344444444443321100 11222234555668888876553
No 417
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.72 E-value=0.12 Score=57.30 Aligned_cols=98 Identities=14% Similarity=0.204 Sum_probs=50.8
Q ss_pred HHHHHh-hCCcEEEEEEcCCCCCHHHHHHHHhhchhhh-ccCCCcEEEEEecCCCC-HHHHHHHHHHHhCCCCCCCCCh-
Q 003515 179 LKLELF-KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVL-GKFKDNIFFVTVSQTPN-VKGIVQKVYQHKGYAVPEFQTD- 254 (814)
Q Consensus 179 l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~~wv~v~~~~~-~~~~~~~i~~~l~~~~~~~~~~- 254 (814)
++++|. -..-....|+|.+|+|||||++.+.+ .+. .+-++.++.+-|.+... +.++.+.+--.+-....+.+..
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn--~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~ 483 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIAN--AITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSD 483 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHH--HHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHH
Confidence 344444 22345688999999999999999987 332 23334344555555433 3333333210010000010111
Q ss_pred ----HHHHHHHHHHh-cccCCCcEEEEEeCC
Q 003515 255 ----EDAINDLERLL-KPIRPEAILLVLDDV 280 (814)
Q Consensus 255 ----~~~~~~l~~~l-~~l~~kr~LlVlDdv 280 (814)
....-.+.+.+ + .++.+||++|++
T Consensus 484 ~~~~a~~ai~~Ae~fre--~G~dVlillDSl 512 (672)
T PRK12678 484 HTTVAELAIERAKRLVE--LGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHHHHHHHHHHH--cCCCEEEEEeCc
Confidence 11112223333 3 799999999998
No 418
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.62 E-value=0.5 Score=47.94 Aligned_cols=52 Identities=13% Similarity=0.303 Sum_probs=36.0
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHH
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQH 243 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~ 243 (814)
-.++.|.|.+|+|||+++.+++.+.-.. ....++|++... +..++...++..
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~--~g~~vly~s~E~--~~~~~~~r~~~~ 64 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKK--QGKPVLFFSLEM--SKEQLLQRLLAS 64 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCceEEEeCCC--CHHHHHHHHHHH
Confidence 4689999999999999999887632222 133467887655 556666666543
No 419
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.62 E-value=0.1 Score=45.94 Aligned_cols=44 Identities=11% Similarity=0.107 Sum_probs=32.7
Q ss_pred CCCCccchhHHHHHHHh----h---CCcEEEEEEcCCCCCHHHHHHHHhhc
Q 003515 168 VTPGLDVPLQELKLELF----K---DGRQVIVVSAPGGYGKTTLVKKLCKD 211 (814)
Q Consensus 168 ~~vGr~~~~~~l~~~L~----~---~~~~vi~I~G~gGiGKTtLa~~v~~~ 211 (814)
.++|-+-..+.+++.+. . +++-|++.+|.+|+|||.+++.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 45777766666666665 2 34668999999999999988777763
No 420
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.62 E-value=0.051 Score=50.18 Aligned_cols=20 Identities=40% Similarity=0.576 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 003515 190 VIVVSAPGGYGKTTLVKKLC 209 (814)
Q Consensus 190 vi~I~G~gGiGKTtLa~~v~ 209 (814)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999875
No 421
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.62 E-value=0.047 Score=50.75 Aligned_cols=21 Identities=43% Similarity=0.589 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 003515 190 VIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 190 vi~I~G~gGiGKTtLa~~v~~ 210 (814)
++.|.|++|+||||+|+.+.+
T Consensus 1 li~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHh
Confidence 478999999999999999886
No 422
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.59 E-value=0.4 Score=52.42 Aligned_cols=92 Identities=13% Similarity=0.189 Sum_probs=53.9
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCC-CHHHHHHHHHHHhCCCC-------CCCCChH----
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTP-NVKGIVQKVYQHKGYAV-------PEFQTDE---- 255 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~---- 255 (814)
-..++|.|.+|+|||||+..+..+ ........++++-+++.. .+.+++..+...-.... .+.+...
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~--~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINN--IAKEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHH--HHhcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 467899999999999999998763 222223335577776654 45667776654321110 1111111
Q ss_pred -HHHHHHHHHhcccCCCcEEEEEeCCC
Q 003515 256 -DAINDLERLLKPIRPEAILLVLDDVW 281 (814)
Q Consensus 256 -~~~~~l~~~l~~l~~kr~LlVlDdv~ 281 (814)
...-.+.+++..-+++++||++||+-
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslT 247 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchh
Confidence 11223344442226899999999983
No 423
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.59 E-value=0.06 Score=49.19 Aligned_cols=38 Identities=26% Similarity=0.426 Sum_probs=25.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhhchhhh-ccCCCcEEEEEecC
Q 003515 189 QVIVVSAPGGYGKTTLVKKLCKDDQVL-GKFKDNIFFVTVSQ 229 (814)
Q Consensus 189 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~~wv~v~~ 229 (814)
++|.|+|..|+|||||++.+.+ ... ..+.. .+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~--~l~~~g~~v-~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN--ELKRRGYRV-AVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH--HHHHTT--E-EEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHhHcCCce-EEEEEccC
Confidence 5899999999999999999998 443 44554 33555543
No 424
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.57 E-value=0.049 Score=52.27 Aligned_cols=21 Identities=48% Similarity=0.774 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 003515 190 VIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 190 vi~I~G~gGiGKTtLa~~v~~ 210 (814)
+|+|.|.+|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 425
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.56 E-value=0.12 Score=51.44 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 003515 190 VIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 190 vi~I~G~gGiGKTtLa~~v~~ 210 (814)
.|.|+|++|+||||+|+.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998876
No 426
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=93.55 E-value=0.55 Score=44.23 Aligned_cols=24 Identities=29% Similarity=0.623 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhc
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKD 211 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~ 211 (814)
-..+.++|.+|.||||+.+.+|..
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 467899999999999999999974
No 427
>PRK13949 shikimate kinase; Provisional
Probab=93.55 E-value=0.056 Score=51.29 Aligned_cols=21 Identities=43% Similarity=0.425 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 003515 190 VIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 190 vi~I~G~gGiGKTtLa~~v~~ 210 (814)
-|.|+|++|+||||+++.+++
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 428
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.53 E-value=0.053 Score=49.31 Aligned_cols=44 Identities=27% Similarity=0.467 Sum_probs=32.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCC
Q 003515 190 VIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYA 247 (814)
Q Consensus 190 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 247 (814)
+|.|-|.+|.||||+|+.++++ +... .++ .-.++++|++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~------~gl~--~vs------aG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH------LGLK--LVS------AGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH------hCCc--eee------ccHHHHHHHHHcCCC
Confidence 6899999999999999999872 3221 222 236788888887765
No 429
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.53 E-value=0.13 Score=54.88 Aligned_cols=63 Identities=16% Similarity=0.212 Sum_probs=46.8
Q ss_pred CCCccchhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHH
Q 003515 169 TPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQK 239 (814)
Q Consensus 169 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~ 239 (814)
++|+++.+..+...+... +-+.+.|.+|+|||+||+.++. ... ...+++.+.......++...
T Consensus 26 ~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~--~l~----~~~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 26 VVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALAR--ALG----LPFVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred eeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHH--HhC----CCeEEEecCCCCCHHHhcCc
Confidence 688877777776666644 4578999999999999999987 333 33567888777777776543
No 430
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.51 E-value=0.065 Score=48.98 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhh
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
.++++|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 57999999999999999988876
No 431
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.51 E-value=0.13 Score=50.71 Aligned_cols=86 Identities=14% Similarity=0.286 Sum_probs=51.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCC-CCHHHHHHHHHHHhCC-------CCCCCCChH-----
Q 003515 189 QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQT-PNVKGIVQKVYQHKGY-------AVPEFQTDE----- 255 (814)
Q Consensus 189 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~-~~~~~~~~~i~~~l~~-------~~~~~~~~~----- 255 (814)
.-++|+|.+|+|||+|+..+.++. . -+. ++++.+++. ....++.+++...-.. .....+...
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~--~--~d~-~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ--D--ADV-VVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC--T--TTE-EEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc--c--ccc-eeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 568999999999999999998742 1 122 457777755 3455666666443110 000000011
Q ss_pred HHHHHHHHHhcccCCCcEEEEEeCC
Q 003515 256 DAINDLERLLKPIRPEAILLVLDDV 280 (814)
Q Consensus 256 ~~~~~l~~~l~~l~~kr~LlVlDdv 280 (814)
...-.+.+.+.. +++++|+++||+
T Consensus 91 ~~a~t~AEyfrd-~G~dVlli~Dsl 114 (215)
T PF00006_consen 91 YTALTIAEYFRD-QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHH-TTSEEEEEEETH
T ss_pred ccchhhhHHHhh-cCCceeehhhhh
Confidence 111223444422 799999999998
No 432
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.51 E-value=0.057 Score=52.02 Aligned_cols=22 Identities=55% Similarity=0.827 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhh
Q 003515 189 QVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 189 ~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
++|+|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999987
No 433
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.45 E-value=0.53 Score=48.21 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=26.8
Q ss_pred hHHHHHHHh-hCCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 176 LQELKLELF-KDGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 176 ~~~l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
.+.++..|. ..+..-++|+|..|.|||||.+.+..
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~ 133 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLAR 133 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhC
Confidence 344445554 33457899999999999999999986
No 434
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.44 E-value=0.28 Score=57.32 Aligned_cols=84 Identities=19% Similarity=0.225 Sum_probs=53.6
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----CCChHHHHHHHH
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPE-----FQTDEDAINDLE 262 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 262 (814)
.+++-|+|.+|+||||||.+++.. ... -...++|++..+.++.. .+++++.+... ....+.....+.
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~--a~~-~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVAN--AQA-AGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHH-cCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 578899999999999999876652 211 12347899988777743 56666654321 122333333344
Q ss_pred HHhcccCCCcEEEEEeCCC
Q 003515 263 RLLKPIRPEAILLVLDDVW 281 (814)
Q Consensus 263 ~~l~~l~~kr~LlVlDdv~ 281 (814)
.+++ .++--|||+|.+-
T Consensus 132 ~lv~--~~~~~LVVIDSI~ 148 (790)
T PRK09519 132 MLIR--SGALDIVVIDSVA 148 (790)
T ss_pred HHhh--cCCCeEEEEcchh
Confidence 4332 3567799999873
No 435
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.36 E-value=0.068 Score=50.41 Aligned_cols=24 Identities=42% Similarity=0.481 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
..++++|+|..|+|||||++.+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 457999999999999999999986
No 436
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.36 E-value=0.055 Score=49.98 Aligned_cols=21 Identities=43% Similarity=0.771 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 003515 190 VIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 190 vi~I~G~gGiGKTtLa~~v~~ 210 (814)
+|.|.|.+|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 437
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.36 E-value=0.063 Score=51.91 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 003515 190 VIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 190 vi~I~G~gGiGKTtLa~~v~~ 210 (814)
++.|+|..|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999884
No 438
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=93.35 E-value=0.2 Score=51.84 Aligned_cols=93 Identities=14% Similarity=0.190 Sum_probs=58.0
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCC-CCHHHHHHHHHHHhCC----------CCCCCCC--h
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQT-PNVKGIVQKVYQHKGY----------AVPEFQT--D 254 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~-~~~~~~~~~i~~~l~~----------~~~~~~~--~ 254 (814)
-.-|++.|-+|+|||.|.+.+.+ .+......-.+|.-+++. ..-.++..+|.+.--. +.++... .
T Consensus 147 GgKiGLFGGAGVGKTVl~~ELI~--Nia~~h~g~SVFaGvGERtREGndLy~Em~es~vl~ktalv~gQMNEpPGaR~RV 224 (468)
T COG0055 147 GGKIGLFGGAGVGKTVLIQELIN--NIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRV 224 (468)
T ss_pred CceeeeeccCCccceeeHHHHHH--HHHHHcCCeEEEEeccccccchHHHHHHHHhcCCCCceeEEEeecCCCCcceeee
Confidence 34589999999999999999988 454444444568888664 3566788888766211 1111000 0
Q ss_pred HHHHHHHHHHhcccCCCcEEEEEeCCCC
Q 003515 255 EDAINDLERLLKPIRPEAILLVLDDVWS 282 (814)
Q Consensus 255 ~~~~~~l~~~l~~l~~kr~LlVlDdv~~ 282 (814)
.-.--...++++--.++.+|+.+||+..
T Consensus 225 altGlT~AEyfRD~~gqdVLlFIDNIfR 252 (468)
T COG0055 225 ALTGLTMAEYFRDEEGQDVLLFIDNIFR 252 (468)
T ss_pred hhhhhhHHHHhhcccCCeEEEEehhhhH
Confidence 0011123444433368999999999964
No 439
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.35 E-value=0.11 Score=51.40 Aligned_cols=20 Identities=35% Similarity=0.620 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 003515 191 IVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 191 i~I~G~gGiGKTtLa~~v~~ 210 (814)
|.|+|++|+||||+|+.+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999875
No 440
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.32 E-value=0.088 Score=51.99 Aligned_cols=30 Identities=40% Similarity=0.452 Sum_probs=25.8
Q ss_pred HHHhhCCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 181 LELFKDGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 181 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
+.+...++++|+++|..|+|||||..++.+
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHH
Confidence 344466799999999999999999999886
No 441
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.30 E-value=0.5 Score=51.42 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhh
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
..+++++|..|+||||++..+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999987765
No 442
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.30 E-value=0.067 Score=52.36 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhh
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
-.+++|+|.+|.|||||++.+.-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 46899999999999999999975
No 443
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.29 E-value=0.24 Score=54.03 Aligned_cols=88 Identities=16% Similarity=0.190 Sum_probs=50.6
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCC-CHHHHHHHHHHHhCCCC-------CCCCCh----
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTP-NVKGIVQKVYQHKGYAV-------PEFQTD---- 254 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~---- 254 (814)
.-..++|+|..|+|||||++.+++... -+. ++++-+++.. .+.++....+..-+... .+.+..
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~-~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADV-SVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCE-EEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 346789999999999999999986321 123 3456665544 34455554444322110 010111
Q ss_pred -HHHHHHHHHHhcccCCCcEEEEEeCC
Q 003515 255 -EDAINDLERLLKPIRPEAILLVLDDV 280 (814)
Q Consensus 255 -~~~~~~l~~~l~~l~~kr~LlVlDdv 280 (814)
....-.+.+++. -+++++|+++||+
T Consensus 232 a~~~a~tiAEyfr-d~G~~Vll~~Dsl 257 (442)
T PRK08927 232 AAYLTLAIAEYFR-DQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHH-HCCCcEEEEEeCc
Confidence 111222444552 1699999999998
No 444
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.28 E-value=0.29 Score=49.64 Aligned_cols=89 Identities=15% Similarity=0.164 Sum_probs=51.3
Q ss_pred cEEEEEEcCCCCCHHHHH-HHHhhchhhhccCCCcEEEEEecCCC-CHHHHHHHHHHHhCCC-------CCCCCChH---
Q 003515 188 RQVIVVSAPGGYGKTTLV-KKLCKDDQVLGKFKDNIFFVTVSQTP-NVKGIVQKVYQHKGYA-------VPEFQTDE--- 255 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~~wv~v~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~--- 255 (814)
-.-++|+|..|+|||+|| ..+.+. . .-+..++++-+++.. ...++...+...-... ..+.+...
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~--~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ--K--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh--c--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 456899999999999996 556542 1 223323566676654 4566666666432111 00111111
Q ss_pred --HHHHHHHHHhcccCCCcEEEEEeCCC
Q 003515 256 --DAINDLERLLKPIRPEAILLVLDDVW 281 (814)
Q Consensus 256 --~~~~~l~~~l~~l~~kr~LlVlDdv~ 281 (814)
...-.+.+++.. +++.+|||+||+-
T Consensus 145 a~~~a~aiAE~fr~-~G~~Vlvl~DslT 171 (274)
T cd01132 145 APYTGCAMGEYFMD-NGKHALIIYDDLS 171 (274)
T ss_pred HHHHHHHHHHHHHH-CCCCEEEEEcChH
Confidence 112334555522 6899999999983
No 445
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.28 E-value=0.25 Score=53.66 Aligned_cols=88 Identities=17% Similarity=0.249 Sum_probs=51.4
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCC-HHHHHHHHHHHhCCCC-------CCCCCh-----
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPN-VKGIVQKVYQHKGYAV-------PEFQTD----- 254 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~-~~~~~~~i~~~l~~~~-------~~~~~~----- 254 (814)
-..++|+|..|+|||||++.+... . ..+. ++.+-+++... +.++...++..-+... .+.+..
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~--~--~~dv-~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRG--T--TADV-IVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccC--C--CCCE-EEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 467999999999999999999862 1 1233 44566665543 4556666544322110 000011
Q ss_pred HHHHHHHHHHhcccCCCcEEEEEeCCC
Q 003515 255 EDAINDLERLLKPIRPEAILLVLDDVW 281 (814)
Q Consensus 255 ~~~~~~l~~~l~~l~~kr~LlVlDdv~ 281 (814)
....-.+.+++.. +++++|+++||+-
T Consensus 237 ~~~A~tiAEyfrd-~G~~VLl~~DslT 262 (444)
T PRK08972 237 CETATTIAEYFRD-QGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHHH-cCCCEEEEEcChH
Confidence 1112234455521 6999999999983
No 446
>PRK13948 shikimate kinase; Provisional
Probab=93.25 E-value=0.075 Score=50.91 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
..+.|.++|+.|+||||+++.+.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 447
>PRK04328 hypothetical protein; Provisional
Probab=93.24 E-value=0.32 Score=49.47 Aligned_cols=52 Identities=15% Similarity=0.257 Sum_probs=34.2
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhC
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKG 245 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~ 245 (814)
-.++.|.|.+|.|||+||.++... ..+.. ..++|++..+. ..++.+ -+++++
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~-~~~~g--e~~lyis~ee~--~~~i~~-~~~~~g 74 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWN-GLQMG--EPGVYVALEEH--PVQVRR-NMRQFG 74 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH-HHhcC--CcEEEEEeeCC--HHHHHH-HHHHcC
Confidence 578999999999999999887653 23332 23678887663 334333 334444
No 448
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.24 E-value=0.064 Score=48.92 Aligned_cols=21 Identities=52% Similarity=0.895 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 003515 190 VIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 190 vi~I~G~gGiGKTtLa~~v~~ 210 (814)
.|+|+|+.|+|||||++.+.+
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999987
No 449
>PHA02774 E1; Provisional
Probab=93.23 E-value=0.26 Score=54.96 Aligned_cols=35 Identities=29% Similarity=0.326 Sum_probs=26.1
Q ss_pred hHHHHHHHhh-CCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 176 LQELKLELFK-DGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 176 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
+..+..+|.. .+..-+.|+|++|.|||.+|..+.+
T Consensus 421 l~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~ 456 (613)
T PHA02774 421 LTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIK 456 (613)
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHH
Confidence 3444455442 2245899999999999999999987
No 450
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.19 E-value=0.074 Score=47.04 Aligned_cols=22 Identities=45% Similarity=0.877 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhhch
Q 003515 191 IVVSAPGGYGKTTLVKKLCKDD 212 (814)
Q Consensus 191 i~I~G~gGiGKTtLa~~v~~~~ 212 (814)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998743
No 451
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.19 E-value=0.67 Score=54.14 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=29.6
Q ss_pred CCCCccchhHHHHHHHh---hC---------CcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 168 VTPGLDVPLQELKLELF---KD---------GRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 168 ~~vGr~~~~~~l~~~L~---~~---------~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
++.|.+...+++.+.+. .. -.+-|.++|++|.|||++|+.++.
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~ 207 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 207 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 34566666555544332 11 123489999999999999999987
No 452
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.18 E-value=0.12 Score=54.24 Aligned_cols=44 Identities=18% Similarity=0.388 Sum_probs=28.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHH
Q 003515 189 QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKG 235 (814)
Q Consensus 189 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~ 235 (814)
+++.+.|-||+||||+|.+.+-. .... ..++.-++.....+..+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~--~A~~-G~rtLlvS~Dpa~~L~d 45 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALA--LARR-GKRTLLVSTDPAHSLSD 45 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH--HHHT-TS-EEEEESSTTTHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHH--HhhC-CCCeeEeecCCCccHHH
Confidence 68899999999999999777652 2221 23466666654444433
No 453
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=93.14 E-value=0.29 Score=46.35 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=35.7
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHH
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQ 238 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~ 238 (814)
...|.|-|..|+|||+|..+.++ ..++.|...++=-++-...+.+.+.+
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~--~L~~~~~~aVI~~Di~t~~Da~~l~~ 61 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLR--ALKDEYKIAVITGDIYTKEDADRLRK 61 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHH--HHHhhCCeEEEeceeechhhHHHHHh
Confidence 36899999999999999999998 77777877554444444444444444
No 454
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.11 E-value=0.24 Score=50.71 Aligned_cols=94 Identities=17% Similarity=0.311 Sum_probs=50.2
Q ss_pred CCccchhHHH---HHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCC
Q 003515 170 PGLDVPLQEL---KLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGY 246 (814)
Q Consensus 170 vGr~~~~~~l---~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~ 246 (814)
|=.++.++.| ...|..++ .-..++|.||+||+|+++.++. +. .+ .++-+.++..++..++-.+
T Consensus 11 Vlf~~ai~hi~ri~RvL~~~~-Gh~LLvG~~GsGr~sl~rLaa~---i~-~~--~~~~i~~~~~y~~~~f~~d------- 76 (268)
T PF12780_consen 11 VLFDEAIEHIARISRVLSQPR-GHALLVGVGGSGRQSLARLAAF---IC-GY--EVFQIEITKGYSIKDFKED------- 76 (268)
T ss_dssp ---HHHHHHHHHHHHHHCSTT-EEEEEECTTTSCHHHHHHHHHH---HT-TE--EEE-TTTSTTTHHHHHHHH-------
T ss_pred eeHHHHHHHHHHHHHHHcCCC-CCeEEecCCCccHHHHHHHHHH---Hh-cc--ceEEEEeeCCcCHHHHHHH-------
Confidence 3344444444 33343443 4456999999999999998775 11 12 2333444555555443322
Q ss_pred CCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchHHHhhh
Q 003515 247 AVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSESLLQKF 291 (814)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~l--~~l~~kr~LlVlDdv~~~~~~~~~~~ 291 (814)
++..+ ..+++++..++++|-+-.++.++..+
T Consensus 77 --------------Lk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~i 109 (268)
T PF12780_consen 77 --------------LKKALQKAGIKGKPTVFLLTDSQIVDESFLEDI 109 (268)
T ss_dssp --------------HHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHH
T ss_pred --------------HHHHHHHHhccCCCeEEEecCcccchHhHHHHH
Confidence 33332 23478899999998765555444443
No 455
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.11 E-value=0.061 Score=60.31 Aligned_cols=48 Identities=27% Similarity=0.332 Sum_probs=34.8
Q ss_pred CCCCCccchhHHHHH---HHhhCC---------cEEEEEEcCCCCCHHHHHHHHhhchhh
Q 003515 167 PVTPGLDVPLQELKL---ELFKDG---------RQVIVVSAPGGYGKTTLVKKLCKDDQV 214 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~---~L~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~~~~ 214 (814)
.++-|.++.++++.+ .|.++. ++=+..+|++|.|||.||++++....+
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V 209 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV 209 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCC
Confidence 456788887666554 444322 455889999999999999999984333
No 456
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.10 E-value=0.084 Score=51.33 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhh
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
..+|.|.|.+|+||||+|+.+++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~ 25 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIAR 25 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 457
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.09 E-value=0.26 Score=53.95 Aligned_cols=90 Identities=19% Similarity=0.284 Sum_probs=51.3
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-------CCCCCh-----
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAV-------PEFQTD----- 254 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~-------~~~~~~----- 254 (814)
.-..++|.|..|+|||||++.+..... -+.++++..-.+...+.++...+...-+... .+.+..
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~----~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQ----CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 456899999999999999999986322 2333544333344455565555554322110 000011
Q ss_pred HHHHHHHHHHhcccCCCcEEEEEeCCC
Q 003515 255 EDAINDLERLLKPIRPEAILLVLDDVW 281 (814)
Q Consensus 255 ~~~~~~l~~~l~~l~~kr~LlVlDdv~ 281 (814)
....-.+.+++. -+++++|+++||+-
T Consensus 238 ~~~a~tiAEyfr-d~G~~VLl~~DslT 263 (441)
T PRK09099 238 AYVATAIAEYFR-DRGLRVLLMMDSLT 263 (441)
T ss_pred HHHHHHHHHHHH-HcCCCEEEeccchh
Confidence 111223444442 16899999999983
No 458
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.09 E-value=0.54 Score=54.84 Aligned_cols=58 Identities=21% Similarity=0.190 Sum_probs=33.6
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCC--HHHHHHHHHHHhCCC
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPN--VKGIVQKVYQHKGYA 247 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~--~~~~~~~i~~~l~~~ 247 (814)
.++++++|+.|+||||.+..++..... .+-...+..++.. .+. ..+-+....+.++..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~-~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvp 244 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVA-REGADQLALLTTD-SFRIGALEQLRIYGRILGVP 244 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHH-HcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCC
Confidence 479999999999999988888762211 1111235455432 232 334444455555543
No 459
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=93.08 E-value=0.54 Score=53.57 Aligned_cols=50 Identities=24% Similarity=0.381 Sum_probs=35.2
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHH
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKV 240 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i 240 (814)
.-+++.|.|.+|+|||+||.++.. ....++...++|++..+. ..++...+
T Consensus 30 ~Gs~~li~G~pGsGKT~l~~qf~~--~~~~~~ge~~lyis~ee~--~~~i~~~~ 79 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLFALQFLV--NGIKRFDEPGVFVTFEES--PEDIIRNV 79 (509)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH--HHHHhcCCCEEEEEccCC--HHHHHHHH
Confidence 357999999999999999998875 233333445789988663 44444444
No 460
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.08 E-value=2.5 Score=43.58 Aligned_cols=110 Identities=10% Similarity=0.064 Sum_probs=61.9
Q ss_pred hHHHHHHHhhCC-cEEEEEEcCCCCCHHHHHHHHhhchhhhc-------------cCCCcEEEEEecCCCCHHHHHHHHH
Q 003515 176 LQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLG-------------KFKDNIFFVTVSQTPNVKGIVQKVY 241 (814)
Q Consensus 176 ~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------~F~~~~~wv~v~~~~~~~~~~~~i~ 241 (814)
.+++...+..+. .....++|+.|+||+++|..++. .+-. ..++ +.|+.-....
T Consensus 6 ~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~--~llC~~~~~~c~~~~~~~HPD-~~~i~p~~~~---------- 72 (290)
T PRK05917 6 WEALIQRVRDQKVPSAIILHGQDLSNLSARAYELAS--LILKETSPEAAYKISQKIHPD-IHEFSPQGKG---------- 72 (290)
T ss_pred HHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHH--HHhCCCCccHHHHHhcCCCCC-EEEEecCCCC----------
Confidence 456667776555 56788999999999999988876 2211 1222 2222110000
Q ss_pred HHhCCCCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhcccCCCeEEEEEcccc
Q 003515 242 QHKGYAVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSV 307 (814)
Q Consensus 242 ~~l~~~~~~~~~~~~~~~~l~~~l--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~ 307 (814)
..-..+....+.+.+ ....++.-++|+|++..-... ++.-+....+++.+|++|.+.
T Consensus 73 ---------~~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~ 135 (290)
T PRK05917 73 ---------RLHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKP 135 (290)
T ss_pred ---------CcCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCCh
Confidence 000112223333333 233577778999998765533 555555555677777776664
No 461
>PRK14530 adenylate kinase; Provisional
Probab=93.07 E-value=0.071 Score=53.02 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhh
Q 003515 189 QVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 189 ~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
+.|.|+|++|+||||+|+.+++
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 462
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.06 E-value=0.35 Score=55.01 Aligned_cols=44 Identities=9% Similarity=0.042 Sum_probs=34.7
Q ss_pred CCCCCccchhHHHHHHHh--hCCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 167 PVTPGLDVPLQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
+.++|....+.++++.+. ......|.|+|..|+||+++|++++.
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHH
Confidence 357999988888877665 22344578999999999999999875
No 463
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.05 E-value=0.089 Score=51.52 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 186 DGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 186 ~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
....+|+|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999986
No 464
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.05 E-value=0.21 Score=57.69 Aligned_cols=73 Identities=15% Similarity=0.206 Sum_probs=47.3
Q ss_pred CCCCCccchhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhhcc-CCCcEEEEEecCCCCHHHHHHHHHHHhC
Q 003515 167 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGK-FKDNIFFVTVSQTPNVKGIVQKVYQHKG 245 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~~wv~v~~~~~~~~~~~~i~~~l~ 245 (814)
+.++|.++.++.+...+... +-+.++|++|+||||+|+.+.+ .+... |.. ++++ .....+..+++..+...++
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~--~l~~~~~~~-~~~~-~n~~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAE--LLPDEELED-ILVY-PNPEDPNMPRIVEVPAGEG 91 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHH--HcCchhhee-EEEE-eCCCCCchHHHHHHHHhhc
Confidence 46688888777776666544 3555999999999999999987 44433 332 2222 1223345566777776655
No 465
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.04 E-value=0.62 Score=55.51 Aligned_cols=173 Identities=18% Similarity=0.291 Sum_probs=84.5
Q ss_pred CCcEEEEEEcCCCCCHHHHHHHHhhchhh--------------hccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCC
Q 003515 186 DGRQVIVVSAPGGYGKTTLVKKLCKDDQV--------------LGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEF 251 (814)
Q Consensus 186 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--------------~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~ 251 (814)
.+.+++.|.|+.+.||||+.+.+.-..-+ -..|+. + +..++...++..-+.
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~-i-~~~ig~~~si~~~lS------------- 389 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKE-I-FADIGDEQSIEQSLS------------- 389 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccce-E-EEecCCccchhhchh-------------
Confidence 34678999999999999998888542111 111221 2 333333222221111
Q ss_pred CChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH-----HHhhhc-c-cCCCeEEEEEccccccC---CC--C--cccc
Q 003515 252 QTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES-----LLQKFK-F-QLPYYKILVTSRSVFPQ---FG--S--GYDL 317 (814)
Q Consensus 252 ~~~~~~~~~l~~~l~~l~~kr~LlVlDdv~~~~~~-----~~~~~~-~-~~~gs~iivTtR~~~~~---~~--~--~~~l 317 (814)
.-.....++..++..+ ..+-|+++|..-...+. +...+. . ...|+.+|+||...... .. . ...+
T Consensus 390 -tfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~ 467 (782)
T PRK00409 390 -TFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASV 467 (782)
T ss_pred -HHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEE
Confidence 1122333444455433 57789999998654321 222211 1 23478999999875210 00 0 1111
Q ss_pred CCCCHHHHHHHHHHHcccCCCCCCCCChHHHHHHHHHcCCchhHHHHHHHHhCCCChHHHHHHHHHH
Q 003515 318 KPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGGSLCGKHPAIWQKRVKEW 384 (814)
Q Consensus 318 ~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~L~~~~~~~w~~~l~~~ 384 (814)
. ++.+ . +-..+-+..+ .+-...|-+|++.+ |+|-.+.--|..+-..........+.++
T Consensus 468 ~-~d~~-~--l~~~Ykl~~G----~~g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l 525 (782)
T PRK00409 468 E-FDEE-T--LRPTYRLLIG----IPGKSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASL 525 (782)
T ss_pred E-EecC-c--CcEEEEEeeC----CCCCcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 1 0111 0 0000111111 11245688888887 7887777777766544433444444443
No 466
>PRK14529 adenylate kinase; Provisional
Probab=93.02 E-value=0.3 Score=48.36 Aligned_cols=20 Identities=35% Similarity=0.423 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 003515 191 IVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 191 i~I~G~gGiGKTtLa~~v~~ 210 (814)
|.|.|++|+||||+|+.++.
T Consensus 3 I~l~G~PGsGK~T~a~~La~ 22 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKK 22 (223)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999999886
No 467
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.02 E-value=0.077 Score=51.40 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhh
Q 003515 189 QVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 189 ~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999976
No 468
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.02 E-value=0.15 Score=52.46 Aligned_cols=53 Identities=15% Similarity=0.332 Sum_probs=37.8
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhC
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKG 245 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~ 245 (814)
.-+++.|+|.+|+|||+++.++.. +...+... ++||+..+. ..++...+.+ ++
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~-vlyvs~~e~--~~~l~~~~~~-~g 74 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLY--EGAREGEP-VLYVSTEES--PEELLENARS-FG 74 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCc-EEEEEecCC--HHHHHHHHHH-cC
Confidence 468999999999999999988887 45455444 779988663 4444444443 44
No 469
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.01 E-value=0.016 Score=65.68 Aligned_cols=186 Identities=21% Similarity=0.218 Sum_probs=0.0
Q ss_pred CCCCcEEEeecccccCcccccccccCCCCCCCEEEecC-CCCCCc-------cccccccccccceecccccccccCcccc
Q 003515 574 MDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEH-VSLPSL-------TTVRMKHLQNVSLVMCNVDQVVQNSTFH 645 (814)
Q Consensus 574 l~~Lr~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~-n~l~~~-------~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 645 (814)
++.|+.|.+.++..+...- ..+....+++|+.|++++ +..... ....+.+|+.|++..+.. ..+.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~--isd~~l~~ 263 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDS-LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGL--VTDIGLSA 263 (482)
T ss_pred CchhhHhhhcccccCChhh-HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhc--cCchhHHH
Q ss_pred cccCCCCccEEecccCc-CcCcCCccc-cCCCCccEEEeecCCCCCC--CchhccCCCCcCEeecccCCCCCCCccccCC
Q 003515 646 FSDAFPNLLEIDIDYCN-DLIELPDGL-CDIVSIKKLRITNCHKLSA--LPEGIGKLVNLQMLTLASCTDLSALPDTIGN 721 (814)
Q Consensus 646 ~~~~l~~L~~L~L~~~~-~~~~lp~~i-~~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~ 721 (814)
+...+++|+.|.+.+|. .+..--..+ ..+++|++|++++|..+.. +.....++++|+.|.+..+..
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~---------- 333 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG---------- 333 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------
Q ss_pred CCCCCEEeccCCCC---CCccchhhcCCCCCCEEeccCCCCCCcC--hhhhcCCCC
Q 003515 722 LSNLNFLDISECLN---IQELPERIGELCSLKTLCLKGCSMFELP--SSILNLENL 772 (814)
Q Consensus 722 L~~L~~L~l~~~~~---~~~lp~~l~~l~~L~~L~l~~~~l~~lp--~~l~~l~~L 772 (814)
++.++.+.+.++.. .....-.+..+++|+.+.+..|...... ..+..++.|
T Consensus 334 c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 334 CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
No 470
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.01 E-value=0.19 Score=46.65 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=27.2
Q ss_pred HHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhhcc
Q 003515 182 ELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGK 217 (814)
Q Consensus 182 ~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~ 217 (814)
.+...+..+|-+.|.+|.||||+|.++++ +....
T Consensus 17 ~~~~~~~~viW~TGLSGsGKSTiA~ale~--~L~~~ 50 (197)
T COG0529 17 ALKGQKGAVIWFTGLSGSGKSTIANALEE--KLFAK 50 (197)
T ss_pred HHhCCCCeEEEeecCCCCCHHHHHHHHHH--HHHHc
Confidence 34455678999999999999999999997 55443
No 471
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.01 E-value=0.27 Score=53.71 Aligned_cols=92 Identities=10% Similarity=0.123 Sum_probs=54.6
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCC-CHHHHHHHHHHHhCCC-------CCCCCChH----
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTP-NVKGIVQKVYQHKGYA-------VPEFQTDE---- 255 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 255 (814)
-.-++|+|.+|+|||+|+..+..+.. +.+-+. ++++-+++.. ...++...+...-... ..+.+...
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v-~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGV-SIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hcCCCE-EEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 46789999999999999999877422 222344 5678887654 3556666665431111 00111111
Q ss_pred -HHHHHHHHHhcccCCCcEEEEEeCCC
Q 003515 256 -DAINDLERLLKPIRPEAILLVLDDVW 281 (814)
Q Consensus 256 -~~~~~l~~~l~~l~~kr~LlVlDdv~ 281 (814)
...-.+.+++..-+++++|+++||+-
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslT 242 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIF 242 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChH
Confidence 11223444442226899999999983
No 472
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.01 E-value=0.48 Score=49.76 Aligned_cols=88 Identities=16% Similarity=0.267 Sum_probs=49.9
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEec-CCCCHHHHHHHHHHHhCCCC-------CCCCCh-----
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVS-QTPNVKGIVQKVYQHKGYAV-------PEFQTD----- 254 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~-~~~~~~~~~~~i~~~l~~~~-------~~~~~~----- 254 (814)
-..++|+|..|.|||||.+.+.... . -+.++ ..-+. +..++.++.......-+... .+.+..
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~--~--~~~~v-i~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGT--T--ADVNV-IALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCC--C--CCEEE-EEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 4678999999999999999888632 1 12223 34444 34455666655554422110 111111
Q ss_pred HHHHHHHHHHhcccCCCcEEEEEeCCC
Q 003515 255 EDAINDLERLLKPIRPEAILLVLDDVW 281 (814)
Q Consensus 255 ~~~~~~l~~~l~~l~~kr~LlVlDdv~ 281 (814)
....-.+.+++.. ++|.+||++||+-
T Consensus 144 ~~~a~~~AEyfr~-~g~~Vll~~Dslt 169 (326)
T cd01136 144 AYTATAIAEYFRD-QGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHHH-cCCCeEEEeccch
Confidence 1112234444421 6999999999983
No 473
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.00 E-value=0.074 Score=52.45 Aligned_cols=24 Identities=50% Similarity=0.697 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
...+|+|+|++|+||||||+.++.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~ 27 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLE 27 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999987
No 474
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.97 E-value=0.29 Score=51.52 Aligned_cols=38 Identities=26% Similarity=0.356 Sum_probs=27.4
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEe
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTV 227 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v 227 (814)
+..+++++|++|+||||++..++. ..... ..++..++.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~--~l~~~-g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH--KYKAQ-GKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHhc-CCeEEEEec
Confidence 468999999999999999998886 33322 233555544
No 475
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.97 E-value=0.077 Score=50.15 Aligned_cols=20 Identities=50% Similarity=0.826 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 003515 191 IVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 191 i~I~G~gGiGKTtLa~~v~~ 210 (814)
|.|.|.+|+|||||++.+.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 68999999999999999987
No 476
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.95 E-value=0.094 Score=44.93 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.8
Q ss_pred cEEEEEEcCCCCCHHHHHHHHh
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLC 209 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~ 209 (814)
-..++|+|..|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999875
No 477
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.95 E-value=0.076 Score=49.55 Aligned_cols=20 Identities=45% Similarity=0.468 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 003515 191 IVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 191 i~I~G~gGiGKTtLa~~v~~ 210 (814)
|.|+|++|.||||+|+.+.+
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999986
No 478
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=92.91 E-value=0.1 Score=55.21 Aligned_cols=43 Identities=26% Similarity=0.262 Sum_probs=35.5
Q ss_pred CCCCccchhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 168 VTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
.+||.+..+..++-.+.++...-+.|.|..|+|||||++.+..
T Consensus 5 ~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred ccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHH
Confidence 4689888887876666666666788999999999999999975
No 479
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.89 E-value=0.38 Score=50.83 Aligned_cols=85 Identities=19% Similarity=0.343 Sum_probs=50.8
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCCC-ChHHHHHHHHHHhc
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQ-TDEDAINDLERLLK 266 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~ 266 (814)
-.+|.|-|-+|||||||..++.. ++..+- .++||+-.+ +..++ +--++.++...+... -.+...+.+.+.++
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~--~vLYVsGEE--S~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAA--RLAKRG--KVLYVSGEE--SLQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHH--HHHhcC--cEEEEeCCc--CHHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 46899999999999999999987 555544 376776544 33332 222445553332211 11222233333332
Q ss_pred ccCCCcEEEEEeCCC
Q 003515 267 PIRPEAILLVLDDVW 281 (814)
Q Consensus 267 ~l~~kr~LlVlDdv~ 281 (814)
+.++-++|+|-+.
T Consensus 166 --~~~p~lvVIDSIQ 178 (456)
T COG1066 166 --QEKPDLVVIDSIQ 178 (456)
T ss_pred --hcCCCEEEEeccc
Confidence 4788899999873
No 480
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.88 E-value=0.16 Score=51.32 Aligned_cols=62 Identities=23% Similarity=0.277 Sum_probs=41.3
Q ss_pred HHHHHHHh--hCCcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHH
Q 003515 177 QELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQK 239 (814)
Q Consensus 177 ~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~ 239 (814)
.+++..+. ..+..+|+|.|.||+|||||.-.+...-. .......|+-|+-|.+++--.++.+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~-~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELR-ERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHH-HCCcEEEEEEECCCCCCCCcccccc
Confidence 45555555 45578999999999999999988876322 2223344556666777765555543
No 481
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.88 E-value=0.083 Score=52.64 Aligned_cols=113 Identities=15% Similarity=0.209 Sum_probs=56.8
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC---CCCChHHHHHHHHH
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVP---EFQTDEDAINDLER 263 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 263 (814)
+.+++.|.|..|.||||+.+.+... .+-.+-. . +|..... .......++..++.... ..+.......++..
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~-~~la~~g--~-~vpa~~~--~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~ 102 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVI-VLMAQIG--C-FVPCDSA--DIPIVDCILARVGASDSQLKGVSTFMAEMLETAA 102 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH-HHHHHhC--C-CcCcccE--EEeccceeEeeeccccchhcCcChHHHHHHHHHH
Confidence 4679999999999999998887642 1111111 0 2221110 00112222333322211 12223333444555
Q ss_pred HhcccCCCcEEEEEeCCCCC---chH------HHhhhcccCCCeEEEEEcccc
Q 003515 264 LLKPIRPEAILLVLDDVWSG---SES------LLQKFKFQLPYYKILVTSRSV 307 (814)
Q Consensus 264 ~l~~l~~kr~LlVlDdv~~~---~~~------~~~~~~~~~~gs~iivTtR~~ 307 (814)
.++.+ .++-|+++|..-.. .+. .+..+.. ..|+.+|+||-..
T Consensus 103 il~~~-~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~-~~~~~vlisTH~~ 153 (222)
T cd03285 103 ILKSA-TENSLIIIDELGRGTSTYDGFGLAWAIAEYIAT-QIKCFCLFATHFH 153 (222)
T ss_pred HHHhC-CCCeEEEEecCcCCCChHHHHHHHHHHHHHHHh-cCCCeEEEEechH
Confidence 55433 56889999998432 211 2233322 3477899998753
No 482
>PRK05922 type III secretion system ATPase; Validated
Probab=92.87 E-value=0.51 Score=51.43 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=49.6
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecC-CCCHHHHHHHHHHHhCCCCC-------CCCCh----
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQ-TPNVKGIVQKVYQHKGYAVP-------EFQTD---- 254 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~-------~~~~~---- 254 (814)
.-..++|+|..|+|||||.+.+.... ..+.++ .+.+++ .....+.+.+.......... +.+..
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gv-i~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS----KSTINV-IALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC----CCCceE-EEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 34568999999999999999998632 123323 334443 33344555555443322110 00000
Q ss_pred -HHHHHHHHHHhcccCCCcEEEEEeCCC
Q 003515 255 -EDAINDLERLLKPIRPEAILLVLDDVW 281 (814)
Q Consensus 255 -~~~~~~l~~~l~~l~~kr~LlVlDdv~ 281 (814)
....-.+.+++. -+++++|+++||+-
T Consensus 231 a~~~a~tiAEyfr-d~G~~VLl~~DslT 257 (434)
T PRK05922 231 AGRAAMTIAEYFR-DQGHRVLFIMDSLS 257 (434)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEeccchh
Confidence 111223444442 16999999999983
No 483
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.87 E-value=0.71 Score=45.88 Aligned_cols=113 Identities=13% Similarity=0.215 Sum_probs=56.8
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC---CCCChHHHHHHHHH
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVP---EFQTDEDAINDLER 263 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 263 (814)
..+++.|.|..|.||||+.+.+.-.. +..+-.+ ..|..-.. -....+|...++.... ..+.-.....++..
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~-~la~~G~-~v~a~~~~----~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~ 103 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALIT-IMAQIGS-FVPASSAT----LSIFDSVLTRMGASDSIQHGMSTFMVELSETSH 103 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHHhCCC-EEEcCceE----EeccceEEEEecCccccccccchHHHHHHHHHH
Confidence 35688999999999999998887521 1111111 11211000 0011111111111110 11122233445555
Q ss_pred HhcccCCCcEEEEEeCCCCCch---------HHHhhhcccCCCeEEEEEcccc
Q 003515 264 LLKPIRPEAILLVLDDVWSGSE---------SLLQKFKFQLPYYKILVTSRSV 307 (814)
Q Consensus 264 ~l~~l~~kr~LlVlDdv~~~~~---------~~~~~~~~~~~gs~iivTtR~~ 307 (814)
+++. .+++-|+++|+...... .++..+... .++.+|++|...
T Consensus 104 il~~-~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~ 154 (222)
T cd03287 104 ILSN-CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYP 154 (222)
T ss_pred HHHh-CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccH
Confidence 5533 35789999999743321 123333322 578999999875
No 484
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=92.86 E-value=0.35 Score=49.93 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=35.8
Q ss_pred CCCCCCCccchhHH---HHHHHhhCC--cEEEEEEcCCCCCHHHHHHHHhh
Q 003515 165 PPPVTPGLDVPLQE---LKLELFKDG--RQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 165 ~~~~~vGr~~~~~~---l~~~L~~~~--~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
..+.+||..+..+. |++++.+.. -+.|.|+|++|.|||+||-.+.+
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~ 87 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAR 87 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHH
Confidence 34567997766553 566666543 68899999999999999999987
No 485
>PRK13946 shikimate kinase; Provisional
Probab=92.84 E-value=0.083 Score=51.04 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhh
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
.+.|.++|++|+||||+++.+.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 486
>PLN02348 phosphoribulokinase
Probab=92.82 E-value=0.15 Score=54.25 Aligned_cols=25 Identities=40% Similarity=0.683 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 186 DGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 186 ~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
+...+|+|.|.+|.||||+|+.+.+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4577999999999999999999987
No 487
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.80 E-value=0.64 Score=50.89 Aligned_cols=38 Identities=34% Similarity=0.546 Sum_probs=30.5
Q ss_pred cchhHHHHHHHh-----hC--CcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 173 DVPLQELKLELF-----KD--GRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 173 ~~~~~~l~~~L~-----~~--~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
...++++..||. .+ +.+|+.|.|++|+||||.++.++.
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLsk 132 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSK 132 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHH
Confidence 345677888887 33 367999999999999999998875
No 488
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.80 E-value=0.18 Score=58.07 Aligned_cols=75 Identities=16% Similarity=0.198 Sum_probs=53.3
Q ss_pred CCCCCCccchhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhhchhhhc-cCCCcEEEEEecCCCCHHHHHHHHHHHh
Q 003515 166 PPVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLG-KFKDNIFFVTVSQTPNVKGIVQKVYQHK 244 (814)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~~wv~v~~~~~~~~~~~~i~~~l 244 (814)
-+.++|.++.++.|...+... +.+.++|.+|+||||+|+.+.+ .+.. +++. ++|..- ...+...+++.+...+
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~--~l~~~~~~~-~~~~~n-p~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAE--LLPKEELQD-ILVYPN-PEDPNNPKIRTVPAGK 103 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHH--HcChHhHHH-heEeeC-CCcchHHHHHHHHHhc
Confidence 356789888888777666544 4688999999999999999987 3432 3444 667544 4446777777777765
Q ss_pred CC
Q 003515 245 GY 246 (814)
Q Consensus 245 ~~ 246 (814)
+.
T Consensus 104 G~ 105 (637)
T PRK13765 104 GK 105 (637)
T ss_pred CH
Confidence 53
No 489
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=92.78 E-value=0.097 Score=55.29 Aligned_cols=44 Identities=25% Similarity=0.289 Sum_probs=34.9
Q ss_pred CCCCCccchhHHHHHHHhhCCcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 167 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
..++|.+..++.+.-.+...+..-+.+.|.+|+||||+|+.+..
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ 51 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAA 51 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHH
Confidence 45789988888776555444555688999999999999999865
No 490
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.77 E-value=0.27 Score=53.56 Aligned_cols=88 Identities=17% Similarity=0.237 Sum_probs=48.7
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEecC-CCCHHHHHHHHHHHhCCCC-------CCCCChH----
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQ-TPNVKGIVQKVYQHKGYAV-------PEFQTDE---- 255 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~-------~~~~~~~---- 255 (814)
-..++|+|..|+|||||++.+.... . -+.+++ +.+++ ...+.++....+..-+... .+.+...
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~--~--~~~gvi-~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNT--D--ADVVVI-ALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCC--C--CCEEEE-EEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 4679999999999999999888632 1 122232 33333 3345555555443322111 0111111
Q ss_pred -HHHHHHHHHhcccCCCcEEEEEeCCC
Q 003515 256 -DAINDLERLLKPIRPEAILLVLDDVW 281 (814)
Q Consensus 256 -~~~~~l~~~l~~l~~kr~LlVlDdv~ 281 (814)
...-.+.+++.. +++++||++||+-
T Consensus 215 ~~~a~~iAEyfrd-~G~~Vll~~DslT 240 (418)
T TIGR03498 215 AYTATAIAEYFRD-QGKDVLLLMDSVT 240 (418)
T ss_pred HHHHHHHHHHHHH-cCCCEEEeccchh
Confidence 112224444421 6899999999983
No 491
>PRK13975 thymidylate kinase; Provisional
Probab=92.76 E-value=0.091 Score=51.37 Aligned_cols=22 Identities=41% Similarity=0.487 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhh
Q 003515 189 QVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 189 ~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
..|+|.|+.|+||||+|+.+.+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~ 24 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAE 24 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 492
>PTZ00185 ATPase alpha subunit; Provisional
Probab=92.76 E-value=0.51 Score=51.90 Aligned_cols=92 Identities=13% Similarity=0.108 Sum_probs=51.7
Q ss_pred cEEEEEEcCCCCCHHHHH-HHHhhchhhh-----ccCCCcEEEEEecCCCCHHHHHHHHHHHhC-CCC-------CCCCC
Q 003515 188 RQVIVVSAPGGYGKTTLV-KKLCKDDQVL-----GKFKDNIFFVTVSQTPNVKGIVQKVYQHKG-YAV-------PEFQT 253 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~-----~~F~~~~~wv~v~~~~~~~~~~~~i~~~l~-~~~-------~~~~~ 253 (814)
-..++|.|-.|+|||+|| -.+.+...+. .+-.. ++++-+++..+.-.-+.+.++.-+ ... .+.+.
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v-~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVI-SIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCE-EEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 457899999999999997 5566643221 12223 558888876653333333333332 110 01111
Q ss_pred hH-----HHHHHHHHHhcccCCCcEEEEEeCCC
Q 003515 254 DE-----DAINDLERLLKPIRPEAILLVLDDVW 281 (814)
Q Consensus 254 ~~-----~~~~~l~~~l~~l~~kr~LlVlDdv~ 281 (814)
.. ...-.+.+++. -+++.+|||+||+-
T Consensus 268 ~~r~~Apy~a~tiAEYFr-d~GkdVLiv~DDLT 299 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFM-NRGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHHH-HcCCCEEEEEcCch
Confidence 11 12233445552 16899999999983
No 493
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.74 E-value=0.071 Score=50.37 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 003515 191 IVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 191 i~I~G~gGiGKTtLa~~v~~ 210 (814)
|.|+|++|+||||+|+.+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999886
No 494
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.70 E-value=0.1 Score=50.33 Aligned_cols=30 Identities=43% Similarity=0.697 Sum_probs=24.9
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCC
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFK 219 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 219 (814)
.++|.|+|+.|+|||||++.+.. .....|.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~ 31 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFG 31 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccc
Confidence 47899999999999999999987 4555553
No 495
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.70 E-value=0.1 Score=50.28 Aligned_cols=24 Identities=25% Similarity=0.544 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHhh
Q 003515 187 GRQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 187 ~~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
+.++|.|+|++|+|||||++.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~ 26 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLE 26 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 467899999999999999999986
No 496
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.67 E-value=0.089 Score=50.13 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhh
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~ 210 (814)
...|.|+|+.|.||||+++.+.+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHH
Confidence 34689999999999999999987
No 497
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=92.66 E-value=0.094 Score=48.95 Aligned_cols=28 Identities=32% Similarity=0.307 Sum_probs=22.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhhchhhhccC
Q 003515 189 QVIVVSAPGGYGKTTLVKKLCKDDQVLGKF 218 (814)
Q Consensus 189 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 218 (814)
+-|.++||.|+||||+.+.+++ ...-+|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk--~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAK--ALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHH--HcCCCc
Confidence 4578999999999999999987 444444
No 498
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=92.66 E-value=0.082 Score=49.04 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 003515 190 VIVVSAPGGYGKTTLVKKLCK 210 (814)
Q Consensus 190 vi~I~G~gGiGKTtLa~~v~~ 210 (814)
+|.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 499
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.61 E-value=0.15 Score=49.69 Aligned_cols=44 Identities=32% Similarity=0.415 Sum_probs=34.6
Q ss_pred CCCCccchhHHHHHHHh-------------hCCcEEEEEEcCCCCCHHHHHHHHhhc
Q 003515 168 VTPGLDVPLQELKLELF-------------KDGRQVIVVSAPGGYGKTTLVKKLCKD 211 (814)
Q Consensus 168 ~~vGr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~ 211 (814)
++=|.+-..+++.+... -+..+-|.++|++|.|||-||++|+++
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 34577888888877664 134677889999999999999999983
No 500
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.58 E-value=0.13 Score=50.83 Aligned_cols=58 Identities=17% Similarity=0.311 Sum_probs=36.6
Q ss_pred cEEEEEEcCCCCCHHHHHHHHhhchhhhccCCCcEEEEEe---------cCCCCHHHH--HHHHHHHhCCCC
Q 003515 188 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTV---------SQTPNVKGI--VQKVYQHKGYAV 248 (814)
Q Consensus 188 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v---------~~~~~~~~~--~~~i~~~l~~~~ 248 (814)
..+|.++||+|.||||..+.++.+ +...+.. .+-+++ .-..++++. .++.+++.+...
T Consensus 19 p~~ilVvGMAGSGKTTF~QrL~~h--l~~~~~p-pYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGP 87 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQRLNSH--LHAKKTP-PYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGP 87 (366)
T ss_pred CcEEEEEecCCCCchhHHHHHHHH--HhhccCC-CeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCC
Confidence 567889999999999999999873 3333332 223332 222345554 457777765443
Done!