Query 003515
Match_columns 814
No_of_seqs 328 out of 4552
Neff 9.6
Searched_HMMs 29240
Date Tue Mar 26 18:24:04 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003515.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1563-1566//hhsearch_pdb/003515hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 378.1 19.3 312 161-502 123-474 (549)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 357.2 24.0 313 160-499 117-452 (1249)
3 1vt4_I APAF-1 related killer D 1.0 1 1 330.6 19.7 286 166-493 127-437 (1221)
4 1z6t_A APAF-1, apoptotic prote 1.0 1 1 301.2 21.7 312 160-497 117-450 (591)
5 3rgz_A Protein brassinosteroid 1.0 1 1 178.6 15.4 227 550-783 417-717 (768)
6 3rgz_A Protein brassinosteroid 1.0 1 1 177.3 17.8 244 550-803 393-714 (768)
7 1ogq_A PGIP-2, polygalacturona 1.0 1 1 174.9 13.0 247 545-804 38-302 (313)
8 4eco_A Uncharacterized protein 1.0 1 1 174.8 8.5 218 552-783 354-600 (636)
9 4fcg_A Uncharacterized protein 1.0 1 1 173.5 19.9 224 552-784 82-315 (328)
10 4ecn_A Leucine-rich repeat pro 1.0 1 1 172.3 12.0 36 550-585 490-525 (876)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=378.15 Aligned_cols=312 Identities=14% Similarity=0.109 Sum_probs=237.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHC---CCEEEEEECCCCCCHHHHHHHHHH--CHHHHCCCCCCEEEEEECCCC--CH
Q ss_conf 89999987787662059999998609---927999985898877799999721--132213579827999966999--99
Q 003515 161 SAPDPPPVTPGLDVPLQELKLELFKD---GRQVIVVSAPGGYGKTTLVKKLCK--DDQVLGKFKDNIFFVTVSQTP--NV 233 (814)
Q Consensus 161 ~~~~~~~~~vGr~~~~~~l~~~l~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~~wv~v~~~~--~~ 233 (814)
..|..+.. +||+.++++|.++|..+ +.++|+|+||||+||||||+++|+ +.+++.+|+. ++|+++++.. +.
T Consensus 123 ~~p~~~~~-~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~-~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 123 NVPKQMTC-YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDS-IVWLKDSGTAPKST 200 (549)
T ss_dssp TCBCCCCS-CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSE-EEEEECCCCSTTHH
T ss_pred CCCCCCCC-CCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCH
T ss_conf 99997760-78417999999987251578962899986999988999999998406987466995-79999789878799
Q ss_pred HHHHHHHHHHHCCCCC--CCC-----CHHHHHHHHHHHHCCCCCC-CEEEEEECCCCCCHHHHHHHCCCCCCEEEEEECC
Q ss_conf 9999999998099999--899-----9389999999973464998-2899981889994677843102599809999725
Q 003515 234 KGIVQKVYQHKGYAVP--EFQ-----TDEDAINDLERLLKPIRPE-AILLVLDDVWSGSESLLQKFKFQLPYYKILVTSR 305 (814)
Q Consensus 234 ~~~~~~i~~~l~~~~~--~~~-----~~~~~~~~l~~~l~~l~~k-~~LlVlDdv~~~~~~~~~~~~~~~~gs~iiiTtR 305 (814)
..++..++.+++.... ... ........+. +.+.++ |+||||||||+.... .+. ..+||+||||||
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~---~~L~~~kr~LlVLDdv~~~~~~---~~~-~~~gs~ilvTTR 273 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMIC---NALIDRPNTLFVFDDVVQEETI---RWA-QELRLRCLVTTR 273 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHH---HHHTTSTTEEEEEEEECCHHHH---HHH-HHTTCEEEEEES
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH---HHHCCCCCEEEEEECCCCCHHH---CCC-CCCCCEEEEECC
T ss_conf 999999999985375534555533146999999999---9976898489999799971441---543-269988999749
Q ss_pred CCCCC--CC---CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 53557--99---83134799989999999987025899999978589999999859955589999887089995899999
Q 003515 306 SVFPQ--FG---SGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGGSLCGKHPAIWQKR 380 (814)
Q Consensus 306 ~~~~~--~~---~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~i~~~L~~~~~~~w~~~ 380 (814)
+.... .+ .+|++++|+.+++|+||.+.++.... ....++++++|+++|+|+||||+++|+.|+.+.. +|...
T Consensus 274 ~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~--~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~ 350 (549)
T 2a5y_B 274 DVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV--GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQ 350 (549)
T ss_dssp BGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHH
T ss_pred CHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHH-HHHHH
T ss_conf 77999970889738989998989999999987448998--5568999999999959983999999998443448-99987
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHH-----------HHCCCCCCCCCCHHHHHHHHHHH--HCCCH--
Q ss_conf 9988204556677478999999999631098999996-----------83798999635979999999995--42543--
Q 003515 381 VKEWTQDVSVFHSNKEILSCLERSLDALNNEVKECYM-----------DLCSFPEDQRIPITALVDMWMEL--YELVD-- 445 (814)
Q Consensus 381 l~~~~~~~~~~~~~~~i~~~l~~s~~~L~~~~k~~f~-----------~~a~fp~~~~i~~~~Li~~Wia~--~~~~~-- 445 (814)
+....... ....+..++.+||+.||+++|.||+ |||+||+++.|+ +++|+|+ |++..
T Consensus 351 l~~~l~~~----~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~ 422 (549)
T 2a5y_B 351 LNNKLESR----GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNE 422 (549)
T ss_dssp HHHHHHHH----CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC------
T ss_pred HHHHHHCC----CHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHEEEECCCCEEE----EEEEEEECCCEECCCC
T ss_conf 57876136----477789897516202267999997526522336743235608997666----5331101355002677
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf -----799999988631111123432015689889765224556678899999851358822
Q 003515 446 -----ELFAIANLHELSNLNLANCVATRKYASDDSCYNDHFVMQHDLLRELAIYQSTLEPIK 502 (814)
Q Consensus 446 -----~~~~~~~l~~L~~r~ll~~~~~~~~~~~~~~~~~~~~~mHdli~~~a~~~~~~e~~~ 502 (814)
++.++ |+++|+++||+++... ....+|+|||+||++|+.++.++++.
T Consensus 423 ~~~~~~~~~~-~l~~L~~rsLl~~~~~---------~~~~~~~mHdlv~~~a~~~~~~~~~~ 474 (549)
T 2a5y_B 423 EEQLDDEVAD-RLKRLSKRGALLSGKR---------MPVLTFKIDHIIHMFLKHVVDAQTIA 474 (549)
T ss_dssp -CCCTHHHHH-HHHHTTTBSSCSEEEC---------SSSCEEECCHHHHHHHHTTSCTHHHH
T ss_pred CCCCHHHHHH-HHHHHHHCCCEEEECC---------CCCEEEEECHHHHHHHHHHHHHHHHH
T ss_conf 8999999999-9999987588367147---------98049996769999999998898998
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=357.18 Aligned_cols=313 Identities=19% Similarity=0.285 Sum_probs=241.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHH--HCCCEEEEEECCCCCCHHHHHHHHHHCHHH-HCCCCCCEEEEEECCCCC--HH
Q ss_conf 7899999877876620599999986--099279999858988777999997211322-135798279999669999--99
Q 003515 160 CSAPDPPPVTPGLDVPLQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCKDDQV-LGKFKDNIFFVTVSQTPN--VK 234 (814)
Q Consensus 160 ~~~~~~~~~~vGr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~~wv~v~~~~~--~~ 234 (814)
...|..+..||||++++++|.++|. .++.++|+|+||||+||||||++++++.+. ..+|..+++|+++++... ..
T Consensus 117 ~~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 117 GGVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp TTCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCCCCCCEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCHHHH
T ss_conf 89799986412579999999999861358877799991898888899999860756788627881799997885726799
Q ss_pred HHHHHHHHHHCCCCCCC----CCHHHHHHHHHHHHCCCCCC--CEEEEEECCCCCCHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf 99999999809999989----99389999999973464998--2899981889994677843102599809999725535
Q 003515 235 GIVQKVYQHKGYAVPEF----QTDEDAINDLERLLKPIRPE--AILLVLDDVWSGSESLLQKFKFQLPYYKILVTSRSVF 308 (814)
Q Consensus 235 ~~~~~i~~~l~~~~~~~----~~~~~~~~~l~~~l~~l~~k--~~LlVlDdv~~~~~~~~~~~~~~~~gs~iiiTtR~~~ 308 (814)
..+..++..+....... .........+...+ .++ |+||||||+|+.. .+..+ .+|++||+|||++.
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l---~~~~~~~LlvlDd~~~~~--~~~~~---~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLM---LRKHPRSLLILDDVWDPW--VLKAF---DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHT---SSSSCSCEEEEESCCCHH--HHTTT---CSSCEEEEEESSTT
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH---HCCCCCEEEEEECCCCHH--HHHHH---CCCCEEEEECCCHH
T ss_conf 99999999865530333478877789999999997---356787899995679977--88763---68978999927789
Q ss_pred CC-----CCCCCCCCC-CCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 57-----998313479-998999999998702589999997858999999985995558999988708999589999999
Q 003515 309 PQ-----FGSGYDLKP-LNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGGSLCGKHPAIWQKRVK 382 (814)
Q Consensus 309 ~~-----~~~~~~l~~-L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~i~~~L~~~~~~~w~~~l~ 382 (814)
.. ....+++.+ |+++++++||...++... ...++.+++|+++|+|+||||+++|++|+.++ ..|...++
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~ 343 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLR 343 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHH
T ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCH----HHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH-HHHHHHHH
T ss_conf 98763488437982588887889999998657981----34838899999984997799999999862480-57999999
Q ss_pred HHHCCC-CC-----CCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 882045-56-----677478999999999631098999996837989996359799999999954254379999998863
Q 003515 383 EWTQDV-SV-----FHSNKEILSCLERSLDALNNEVKECYMDLCSFPEDQRIPITALVDMWMELYELVDELFAIANLHEL 456 (814)
Q Consensus 383 ~~~~~~-~~-----~~~~~~i~~~l~~s~~~L~~~~k~~f~~~a~fp~~~~i~~~~Li~~Wia~~~~~~~~~~~~~l~~L 456 (814)
.+.... .. ......+..++.+||+.|++++|.||+|||+||+++.|+++.++.+|.++ ...++.++++|
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----~~~~~~~l~~L 418 (1249)
T 3sfz_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----TEEVEDILQEF 418 (1249)
T ss_dssp HHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEECHHHHHHHHCCC-----HHHHHHHHHHH
T ss_conf 9865044303465564467799999989986799999999972813799751899999885898-----88999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 1111123432015689889765224556678899999851358
Q 003515 457 SNLNLANCVATRKYASDDSCYNDHFVMQHDLLRELAIYQSTLE 499 (814)
Q Consensus 457 ~~r~ll~~~~~~~~~~~~~~~~~~~~~mHdli~~~a~~~~~~e 499 (814)
+++||++... .+...+|+|||++|++++..+.++
T Consensus 419 ~~~sl~~~~~---------~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 419 VNKSLLFCNR---------NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHTTSCEEEE---------SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHCCCEEEEC---------CCCCEEEEECHHHHHHHHHHHHHH
T ss_conf 7446338963---------798118996689999987450678
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=330.56 Aligned_cols=286 Identities=18% Similarity=0.241 Sum_probs=224.2
Q ss_pred CCCCCCCCCHHHHHHHHHHH-CCCEEEEEECCCCCCHHHHHHHHHHCHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 98778766205999999860-99279999858988777999997211322135798279999669999999999999980
Q 003515 166 PPVTPGLDVPLQELKLELFK-DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHK 244 (814)
Q Consensus 166 ~~~~vGr~~~~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~~~~~i~~~l 244 (814)
....|||+.++++|.++|.. ++.++|+|+||||+||||||++++++.+++.+|+.+++|+++++.++...++..+...+
T Consensus 127 tk~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CCSCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 78778928999999999743589718999769996679999999971498874899389998289999999999999998
Q ss_pred CCCC---CC-C---CCH----HHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCEEEEEECCCCCCC---
Q ss_conf 9999---98-9---993----89999999973464998289998188999467784310259980999972553557---
Q 003515 245 GYAV---PE-F---QTD----EDAINDLERLLKPIRPEAILLVLDDVWSGSESLLQKFKFQLPYYKILVTSRSVFPQ--- 310 (814)
Q Consensus 245 ~~~~---~~-~---~~~----~~~~~~l~~~l~~l~~k~~LlVlDdv~~~~~~~~~~~~~~~~gs~iiiTtR~~~~~--- 310 (814)
+... .. . ... +.....+...++...++|+||||||+|+. ..+..++ +||+||||||+....
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f~---pGSRILVTTRd~~Va~~l 281 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAFN---LSCKILLTTRFKQVTDFL 281 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHHH---SSCCEEEECSCSHHHHHH
T ss_pred HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHH--HHHHHHC---CCEEEEEECCCHHHHHHC
T ss_conf 62272102200134679999999999999999850478879987186818--9998647---982999944373799866
Q ss_pred -CCCCCCCC------CCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC--CHHHHHHHH
Q ss_conf -99831347------999899999999870258999999785899999998599555899998870899--958999999
Q 003515 311 -FGSGYDLK------PLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGGSLCGK--HPAIWQKRV 381 (814)
Q Consensus 311 -~~~~~~l~------~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~i~~~L~~~--~~~~w~~~l 381 (814)
....|.++ +|+.+|+|+||.+.. ... ..+...++ |+|+||||+++|+.|+.+ +..+|...
T Consensus 282 ~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~- 350 (1221)
T 1vt4_I 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV- 350 (1221)
T ss_dssp HHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-
T ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHC-CCC------HHHHHHHH---HCCCHHHHHHHHHHHHCCCCCHHHHHCC-
T ss_conf 897089946865568969999999999974-998------89999999---6989999999999984889979998669-
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHCHHHH-HHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 9882045566774789999999996310989-999968379899963597999999999542543799999988631111
Q 003515 382 KEWTQDVSVFHSNKEILSCLERSLDALNNEV-KECYMDLCSFPEDQRIPITALVDMWMELYELVDELFAIANLHELSNLN 460 (814)
Q Consensus 382 ~~~~~~~~~~~~~~~i~~~l~~s~~~L~~~~-k~~f~~~a~fp~~~~i~~~~Li~~Wia~~~~~~~~~~~~~l~~L~~r~ 460 (814)
....+..++.+||+.||++. |+||++||+||+++.|+.+.++.+|++++ . +.++.++++|+++|
T Consensus 351 -----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG---e-edAe~~L~eLvdRS 415 (1221)
T 1vt4_I 351 -----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI---K-SDVMVVVNKLHKYS 415 (1221)
T ss_dssp -----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC---S-HHHHHHHHHHHTSS
T ss_pred -----------CHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC---H-HHHHHHHHHHHHHC
T ss_conf -----------86189999999998488999999999971779999877999998766778---8-99999999999619
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 123432015689889765224556678899999
Q 003515 461 LANCVATRKYASDDSCYNDHFVMQHDLLRELAI 493 (814)
Q Consensus 461 ll~~~~~~~~~~~~~~~~~~~~~mHdli~~~a~ 493 (814)
|++.. .....|+|||++++++.
T Consensus 416 LLq~d-----------~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 416 LVEKQ-----------PKESTISIPSIYLELKV 437 (1221)
T ss_dssp SSSBC-----------SSSSEEBCCCHHHHHHH
T ss_pred CEEEE-----------CCCCEEEEHHHHHHHHC
T ss_conf 88986-----------89998986099999856
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=1.00 E-value=1 Score=301.16 Aligned_cols=312 Identities=21% Similarity=0.327 Sum_probs=232.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHH--HCCCEEEEEECCCCCCHHHHHHHHHHCHHH-HCCCCCCEEEEEECCCCCHHHH
Q ss_conf 7899999877876620599999986--099279999858988777999997211322-1357982799996699999999
Q 003515 160 CSAPDPPPVTPGLDVPLQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCKDDQV-LGKFKDNIFFVTVSQTPNVKGI 236 (814)
Q Consensus 160 ~~~~~~~~~~vGr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~~wv~v~~~~~~~~~ 236 (814)
...|..+..||||+.+++++.+++. .++.++|+|+||||+||||||..++++..+ ...|+.+++|++++.. +...+
T Consensus 117 ~~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~ 195 (591)
T 1z6t_A 117 GGVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGL 195 (591)
T ss_dssp TTCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHH
T ss_pred CCCCCCCCEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCHHHHHHHCCCCEEEEECCCC-CHHHH
T ss_conf 89999987140529999999999860368884699976998988999999983556888528996599977877-66889
Q ss_pred HHH---HHHHHCCCC----CCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCEEEEEECCCCCC
Q ss_conf 999---999809999----9899938999999997346499828999818899946778431025998099997255355
Q 003515 237 VQK---VYQHKGYAV----PEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSESLLQKFKFQLPYYKILVTSRSVFP 309 (814)
Q Consensus 237 ~~~---i~~~l~~~~----~~~~~~~~~~~~l~~~l~~l~~k~~LlVlDdv~~~~~~~~~~~~~~~~gs~iiiTtR~~~~ 309 (814)
+.. +...++... ............+...+.. +.+++||||||+|+. ..+..+ .++++||+|||+...
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~LLVLDdv~~~--~~l~~l---~~~~~ilvTsR~~~~ 269 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLR-KHPRSLLILDDVWDS--WVLKAF---DSQCQILLTTRDKSV 269 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHH-TCTTCEEEEEEECCH--HHHHTT---CSSCEEEEEESCGGG
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCC-CCCCEEEEEECCCCH--HHHHHH---CCCCEEEEECCCCHH
T ss_conf 99999999985035565567998899999999999706-799869998589987--999876---379869998988177
Q ss_pred C---CCCCCCC---CCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 7---9983134---799989999999987025899999978589999999859955589999887089995899999998
Q 003515 310 Q---FGSGYDL---KPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGGSLCGKHPAIWQKRVKE 383 (814)
Q Consensus 310 ~---~~~~~~l---~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~i~~~L~~~~~~~w~~~l~~ 383 (814)
. .+..+++ ++|+.+++++||...++... ....+.+.+|+++|+|+||||+++|+.++... ..|...+..
T Consensus 270 ~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~ 344 (591)
T 1z6t_A 270 TDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQ 344 (591)
T ss_dssp GTTCCSCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHH
T ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCC----CCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC-HHHHHHHHH
T ss_conf 7734898268615889998999999998718983----10459999999995898379999999984484-359999999
Q ss_pred HHCCCC------CCCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 820455------66774789999999996310989999968379899963597999999999542543799999988631
Q 003515 384 WTQDVS------VFHSNKEILSCLERSLDALNNEVKECYMDLCSFPEDQRIPITALVDMWMELYELVDELFAIANLHELS 457 (814)
Q Consensus 384 ~~~~~~------~~~~~~~i~~~l~~s~~~L~~~~k~~f~~~a~fp~~~~i~~~~Li~~Wia~~~~~~~~~~~~~l~~L~ 457 (814)
+..... .......+..++..||+.|+++.|.||++||+||+++.|+...+..+|.+. . ..+..++++|+
T Consensus 345 l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~----~-~~~~~~l~~L~ 419 (591)
T 1z6t_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME----T-EEVEDILQEFV 419 (591)
T ss_dssp HHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC----H-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCC----H-HHHHHHHHHHH
T ss_conf 988689876511465437899999999986899999999974556799850899999996658----8-99999999998
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 1111234320156898897652245566788999998513
Q 003515 458 NLNLANCVATRKYASDDSCYNDHFVMQHDLLRELAIYQST 497 (814)
Q Consensus 458 ~r~ll~~~~~~~~~~~~~~~~~~~~~mHdli~~~a~~~~~ 497 (814)
+++|++... .+....|+||+++|+++.....
T Consensus 420 ~~~Ll~~~~---------~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 420 NKSLLFCDR---------NGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HTTSSEEEE---------ETTEEEEECCHHHHHHHHHHTG
T ss_pred HCCCEEEEC---------CCCCCEEEECHHHHHHHHHHHH
T ss_conf 595868854---------8985679976899999986535
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=178.64 Aligned_cols=227 Identities=16% Similarity=0.166 Sum_probs=149.8
Q ss_pred CCCEEEEEEECCCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC---CCCCCCCCC
Q ss_conf 89348999933689998881127999986899312565574454655568898997888157788985---520245455
Q 003515 550 APEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSL---TTVRMKHLQ 626 (814)
Q Consensus 550 ~~~~~~l~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~p~~~~~l~~l~~l~~L~~L~l~~n~i~~l---~~~~l~~L~ 626 (814)
++.++.+.+..+.....+|..+..+++|+.|++.+|....... ..+..+++|++|++++|.+.+. ....+++|+
T Consensus 417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 493 (768)
T 3rgz_A 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP---QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493 (768)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC---GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred CCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC---HHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCC
T ss_conf 8987989895884668546777449988989897881547189---7882877732999019951375887881699899
Q ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHH------------
Q ss_conf 00011224532234732222357987338942467675768811169987648985358999978200------------
Q 003515 627 NVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEG------------ 694 (814)
Q Consensus 627 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~lp~~------------ 694 (814)
.|++.+|.+....+.. +..+++|+.|++++|.+.+.+|..+..+++|++|++++|...+.+|..
T Consensus 494 ~L~L~~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 569 (768)
T 3rgz_A 494 WISLSNNRLTGEIPKW----IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569 (768)
T ss_dssp EEECCSSCCCSCCCGG----GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred EEECCCCCCCCCCCHH----HHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHC
T ss_conf 8975399518968768----856899998989789433748877708898998989888468827957860421223201
Q ss_pred ----------------------------------------------------------CCCCCCCCEEECCCCCCCCCCC
Q ss_conf ----------------------------------------------------------1389776876022678889884
Q 003515 695 ----------------------------------------------------------IGKLVNLQMLTLASCTDLSALP 716 (814)
Q Consensus 695 ----------------------------------------------------------~~~l~~L~~L~l~~~~~~~~lp 716 (814)
++.+++|++|++++|...+.+|
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip 649 (768)
T 3rgz_A 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649 (768)
T ss_dssp TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCC
T ss_conf 34542111134443222233222100135563232002321100113310046274334033566579785880155587
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCEEECCCCHHH
Q ss_conf 22389998778806578798855121119999889932388899-86821116989999976982156
Q 003515 717 DTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMF-ELPSSILNLENLEVVKCDEETAY 783 (814)
Q Consensus 717 ~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~~~~~~ 783 (814)
..++.+++|+.|++++|...+.+|..++.+++|+.|++++|.++ .+|..+..++.|+.|++.+|...
T Consensus 650 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCC
T ss_conf 78841415787848688038878967847778998989788023868867757887897879688155
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=177.33 Aligned_cols=244 Identities=17% Similarity=0.201 Sum_probs=185.8
Q ss_pred CCCEEEEEEECCCCCCCCCHHCCCCCCCCEEEEECCCC---CCCCCCCCCCCCCCCCCCEEEECCCCCCCC---CCCCCC
Q ss_conf 89348999933689998881127999986899312565---574454655568898997888157788985---520245
Q 003515 550 APEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGF---FPAELSNIQVFGALSNLKRIRLEHVSLPSL---TTVRMK 623 (814)
Q Consensus 550 ~~~~~~l~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~---~p~~~~~l~~l~~l~~L~~L~l~~n~i~~l---~~~~l~ 623 (814)
++.++.+.+..+.....+|..+..+++|+.|++++|.. .|.. ++.+++|++|++++|.+.+. ....++
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~------l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 466 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS------LGSLSKLRDLKLWLNMLEGEIPQELMYVK 466 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG------GGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred CCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHH------HHCCCCCCEEECCCCCCCCCCCHHHCCCC
T ss_conf 477618989778465424877756898798989588466854677------74499889898978815471897882877
Q ss_pred CCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHCCCCCCCCE
Q ss_conf 45500011224532234732222357987338942467675768811169987648985358999978200138977687
Q 003515 624 HLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQM 703 (814)
Q Consensus 624 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 703 (814)
+|+.|++.+|.+....+.. +..+++|+.|++++|.+.+.+|.++..+++|++|++++|...+.+|..++.+++|++
T Consensus 467 ~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 542 (768)
T 3rgz_A 467 TLETLILDFNDLTGEIPSG----LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542 (768)
T ss_dssp TCCEEECCSSCCCSCCCGG----GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCE
T ss_pred CCEEEEECCCCCCCCCCHH----HHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCE
T ss_conf 7329990199513758878----816998998975399518968768856899998989789433748877708898998
Q ss_pred EECCCCCCCCCCCCC-----------------------------------------------------------------
Q ss_conf 602267888988422-----------------------------------------------------------------
Q 003515 704 LTLASCTDLSALPDT----------------------------------------------------------------- 718 (814)
Q Consensus 704 L~l~~~~~~~~lp~~----------------------------------------------------------------- 718 (814)
|++++|...+.+|..
T Consensus 543 L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g 622 (768)
T 3rgz_A 543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622 (768)
T ss_dssp EECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred EECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECC
T ss_conf 98988846882795786042122320134542111134443222233222100135563232002321100113310046
Q ss_pred -----CCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCEEECCCCHHHH-HHHHHHC
Q ss_conf -----389998778806578798855121119999889932388899-868211169899999769821560-4765402
Q 003515 719 -----IGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMF-ELPSSILNLENLEVVKCDEETAYQ-WEYFQLG 791 (814)
Q Consensus 719 -----~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~~~~~~~-~~~~~~~ 791 (814)
+..+++|+.|++++|...+.+|..++.+++|+.|++++|.++ .+|..+.+++.|+.|++..|.... .+..-..
T Consensus 623 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~ 702 (768)
T 3rgz_A 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702 (768)
T ss_dssp ECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred CCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHC
T ss_conf 27433403356657978588015558778841415787848688038878967847778998989788023868867757
Q ss_pred CCCCEEEEECCC
Q ss_conf 888499740531
Q 003515 792 QAKFRIEVIQED 803 (814)
Q Consensus 792 l~~L~~~~~~~~ 803 (814)
++.|...+..++
T Consensus 703 l~~L~~L~ls~N 714 (768)
T 3rgz_A 703 LTMLTEIDLSNN 714 (768)
T ss_dssp CCCCSEEECCSS
T ss_pred CCCCCEEECCCC
T ss_conf 887897879688
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=1.00 E-value=1 Score=174.87 Aligned_cols=247 Identities=15% Similarity=0.226 Sum_probs=195.4
Q ss_pred CCCCCCC------CEEEEEEECCCCCC--CCCHHCCCCCCCCEEEEEC-CCC---CCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 6668889------34899993368999--8881127999986899312-565---5744546555688989978881577
Q 003515 545 WYDMEAP------EVKVVVLNVRTKKY--TLPKFLEKMDKLKVMIVTN-YGF---FPAELSNIQVFGALSNLKRIRLEHV 612 (814)
Q Consensus 545 ~~~~~~~------~~~~l~l~~~~~~~--~~p~~~~~l~~Lr~L~l~~-~~~---~p~~~~~l~~l~~l~~L~~L~l~~n 612 (814)
|.|+.|. .++.+.+....... .+|..+..+++|++|++++ +.. +|.. ++.+++|++|++++|
T Consensus 38 w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~------l~~l~~L~~L~Ls~n 111 (313)
T 1ogq_A 38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA------IAKLTQLHYLYITHT 111 (313)
T ss_dssp STTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG------GGGCTTCSEEEEEEE
T ss_pred CCCEEECCCCCCCEEEEEECCCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCHH------HHCCCCCCEEECCCC
T ss_conf 86258578987764889988899746876569657478888863278888636658966------846789997989688
Q ss_pred CCCCC---CCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEEEECCCCC
Q ss_conf 88985---5202454550001122453223473222235798733894246767576881116998-7648985358999
Q 003515 613 SLPSL---TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIV-SIKKLRITNCHKL 688 (814)
Q Consensus 613 ~i~~l---~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~i~~l~-~L~~L~l~~~~~~ 688 (814)
.+... ....+++|+.|++.++.+....+.. +..+++|++|++++|.+.+.+|..+..+. +|++|++++|...
T Consensus 112 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS----ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp CCEEECCGGGGGCTTCCEEECCSSEEESCCCGG----GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred EECCCCCHHHHCCCCCCEEECCCCCCCCCCCHH----HHCCCCCCEEECCCCCCCCCCCHHHHHHHHCCCEEECCCCEEE
T ss_conf 467748978837898898969778357727867----8459887868894884458187788634531859988598621
Q ss_pred CCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCC-CCCHHHH
Q ss_conf 978200138977687602267888988422389998778806578798855121119999889932388899-8682111
Q 003515 689 SALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMF-ELPSSIL 767 (814)
Q Consensus 689 ~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~-~lp~~l~ 767 (814)
+.+|..+..+. |++|++++|......|..+..+++|+.|++++|......| .+..+++|+.|++++|.++ .+|..+.
T Consensus 188 ~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 265 (313)
T 1ogq_A 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLT 265 (313)
T ss_dssp EECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred CCCCHHHHCCC-CCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCEEEECC-CCCCCCCCCEEECCCCCCCCCCCHHHH
T ss_conf 52776886881-3689791784658377777467888789897772142258-634468789898928821684875786
Q ss_pred CCCCCCEEECCCCHHH-HHHHHHHCCCCCEEEEECCCC
Q ss_conf 6989999976982156-047654028884997405311
Q 003515 768 NLENLEVVKCDEETAY-QWEYFQLGQAKFRIEVIQEDI 804 (814)
Q Consensus 768 ~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~~~~~~~~ 804 (814)
.+++|+.|++.+|... ..+... .+++|+.....++.
T Consensus 266 ~l~~L~~L~Ls~N~l~~~ip~~~-~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNK 302 (313)
T ss_dssp GCTTCCEEECCSSEEEEECCCST-TGGGSCGGGTCSSS
T ss_pred CCCCCCEEECCCCCCCCCCCCCC-CCCCCCHHHHCCCC
T ss_conf 68478989886883305179885-32545867756899
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=174.77 Aligned_cols=218 Identities=14% Similarity=0.130 Sum_probs=138.4
Q ss_pred CEEEEEEECCCCCCCCCHHCCCCCC-CCEEEEECCCCC--CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC--------
Q ss_conf 3489999336899988811279999-868993125655--74454655568898997888157788985520--------
Q 003515 552 EVKVVVLNVRTKKYTLPKFLEKMDK-LKVMIVTNYGFF--PAELSNIQVFGALSNLKRIRLEHVSLPSLTTV-------- 620 (814)
Q Consensus 552 ~~~~l~l~~~~~~~~~p~~~~~l~~-Lr~L~l~~~~~~--p~~~~~l~~l~~l~~L~~L~l~~n~i~~l~~~-------- 620 (814)
.++.+.+..+.. ..+|..+..+++ |+.|++++|... |..+. ...+++|++|++++|.+....+.
T Consensus 354 ~L~~L~L~~N~l-~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~----~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~ 428 (636)
T 4eco_A 354 KLASLNLAYNQI-TEIPANFCGFTEQVENLSFAHNKLKYIPNIFD----AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428 (636)
T ss_dssp EESEEECCSSEE-EECCTTSEEECTTCCEEECCSSCCSSCCSCCC----TTCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred CCCEEECCCCCC-CCCCHHHHHHCCCCCEEECCCCCCCCCCHHHH----HCCCCCCCEEECCCCCCCCCCHHHHCCCCCC
T ss_conf 889898989940-30337565102368689852982754466553----3345766889774885788652442002201
Q ss_pred --CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-C-------CCCCEEEEECCCCCCC
Q ss_conf --24545500011224532234732222357987338942467675768811169-9-------8764898535899997
Q 003515 621 --RMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCD-I-------VSIKKLRITNCHKLSA 690 (814)
Q Consensus 621 --~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~i~~-l-------~~L~~L~l~~~~~~~~ 690 (814)
.+.+|+.|++.+|.+..+.. ..+..+++|+.|+|++|.+. .+|..+.. + ++|+.|++++|.. ..
T Consensus 429 ~~~~~~L~~L~Ls~N~l~~lp~----~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~ 502 (636)
T 4eco_A 429 PFKGINVSSINLSNNQISKFPK----ELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKL-TK 502 (636)
T ss_dssp CCCCCCEEEEECCSSCCCSCCT----HHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCC-CB
T ss_pred CCCCCCCCEEECCCCCCCCCCH----HHHCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCCCCCCCCEEECCCCCC-CC
T ss_conf 1258988889772796686787----88715898898989799788-739788404400122147733898969938-81
Q ss_pred CCHHCC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC------CCCCCCCCCHHHCCCCCCCEEECCCCCCCCC
Q ss_conf 820013--89776876022678889884223899987788065------7879885512111999988993238889986
Q 003515 691 LPEGIG--KLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDIS------ECLNIQELPERIGELCSLKTLCLKGCSMFEL 762 (814)
Q Consensus 691 lp~~~~--~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~------~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~l 762 (814)
+|..+. .+++|++|++++|.... +|..+..+++|+.|+++ +|...+.+|..+..+++|+.|++++|.++.+
T Consensus 503 lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~i 581 (636)
T 4eco_A 503 LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV 581 (636)
T ss_dssp CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC
T ss_pred CCHHHHHCCCCCCCEEECCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCC
T ss_conf 6854534458876989898998877-682353088878788988866566731212737785699878898989947705
Q ss_pred CHHHHCCCCCCEEECCCCHHH
Q ss_conf 821116989999976982156
Q 003515 763 PSSILNLENLEVVKCDEETAY 783 (814)
Q Consensus 763 p~~l~~l~~L~~L~l~~~~~~ 783 (814)
|..+. ++|+.|++.+|...
T Consensus 582 p~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 582 NEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CSCCC--TTCCEEECCSCTTC
T ss_pred CHHHH--CCCCEEECCCCCCC
T ss_conf 97683--86789987699876
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=1.00 E-value=1 Score=173.51 Aligned_cols=224 Identities=24% Similarity=0.370 Sum_probs=182.3
Q ss_pred CEEEEEEECCCCCCCCCHHCCCCCCCCEEEEECCCCC--CCCCCCCCCCCCCCCCCEEEECCCCCCCC--CCCCCCCCCC
Q ss_conf 3489999336899988811279999868993125655--74454655568898997888157788985--5202454550
Q 003515 552 EVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFF--PAELSNIQVFGALSNLKRIRLEHVSLPSL--TTVRMKHLQN 627 (814)
Q Consensus 552 ~~~~l~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~~~~--p~~~~~l~~l~~l~~L~~L~l~~n~i~~l--~~~~l~~L~~ 627 (814)
.+..+.+..+.. ..+|..+..+++|++|++++|.+. |. .++.+++|++|++++|.+..+ ....+++|+.
T Consensus 82 ~l~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~n~l~~lp~------~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 82 GRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLMELPD------TMQQFAGLETLTLARNPLRALPASIASLNRLRE 154 (328)
T ss_dssp TCCEEEEESSCC-SSCCSCGGGGTTCSEEEEESSCCCCCCS------CGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCE
T ss_pred CEEEEECCCCCC-HHCCHHHHHCCCCCEEECCCCCCCCHHH------HHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCE
T ss_conf 606997469983-2238655128788888799999654518------872567999898989961207097753868797
Q ss_pred CCEECCCCCCCCCCCCC-----CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHCCCCCCCC
Q ss_conf 00112245322347322-----2235798733894246767576881116998764898535899997820013897768
Q 003515 628 VSLVMCNVDQVVQNSTF-----HFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQ 702 (814)
Q Consensus 628 L~l~~~~~~~~~~~~~~-----~~~~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 702 (814)
|++.+|......+.... ..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.. ..+|..++.+++|+
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l-~~l~~~l~~l~~L~ 232 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL-SALGPAIHHLPKLE 232 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCC-CCCCGGGGGCTTCC
T ss_pred EECCCCCCCCCCCHHHHHCCCHHHHCCCCCCCEEECCCCCCC-CCHHHHCCCCCCCEEECCCCCC-CCCCHHHCCCCCCC
T ss_conf 779899984604966762321133255889998877689857-2617656999888898637987-76735454699899
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCC-CCCCCHHHHCCCCCCEEECCCCH
Q ss_conf 76022678889884223899987788065787988551211199998899323888-99868211169899999769821
Q 003515 703 MLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCS-MFELPSSILNLENLEVVKCDEET 781 (814)
Q Consensus 703 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~-l~~lp~~l~~l~~L~~L~l~~~~ 781 (814)
+|++++|...+.+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|. ++.+|..+.++++|+.+.+..+.
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred EEECCCCCCHHHHHHHHCCCCCCCEEECCCCCCHHHCCHHHHCCCCCCEEECCCCCCHHHCCHHHHHCCCCEEEECCHHH
T ss_conf 98785895353517886477778887798998663224666249988989687997644443777643186389678899
Q ss_pred HHH
Q ss_conf 560
Q 003515 782 AYQ 784 (814)
Q Consensus 782 ~~~ 784 (814)
...
T Consensus 313 ~~~ 315 (328)
T 4fcg_A 313 QAQ 315 (328)
T ss_dssp SCC
T ss_pred HHH
T ss_conf 998
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=172.27 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=14.3
Q ss_pred CCCEEEEEEECCCCCCCCCHHCCCCCCCCEEEEECC
Q ss_conf 893489999336899988811279999868993125
Q 003515 550 APEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNY 585 (814)
Q Consensus 550 ~~~~~~l~l~~~~~~~~~p~~~~~l~~Lr~L~l~~~ 585 (814)
++.++.+.|..+.....+|..++.+++|+.|++++|
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred CCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCC
T ss_conf 999778987189887527387737999899989689
Done!