Query 003516
Match_columns 813
No_of_seqs 212 out of 1062
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 00:55:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003516.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003516hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03202 protein argonaute; Pr 100.0 7E-118 2E-122 1076.7 71.1 668 124-813 27-740 (900)
2 KOG1041 Translation initiation 100.0 1E-102 3E-107 935.9 63.7 651 127-813 42-708 (876)
3 KOG1042 Germ-line stem cell di 100.0 1.5E-95 3E-100 795.7 47.4 589 135-811 87-702 (845)
4 cd04657 Piwi_ago-like Piwi_ago 100.0 1.5E-55 3.2E-60 498.8 27.9 289 496-813 1-300 (426)
5 cd04658 Piwi_piwi-like_Euk Piw 100.0 9.2E-54 2E-58 488.6 33.1 314 465-813 3-328 (448)
6 cd02826 Piwi-like Piwi-like: P 100.0 2.5E-45 5.5E-50 411.8 28.3 259 509-813 2-273 (393)
7 PF02171 Piwi: Piwi domain; I 100.0 1.8E-32 4E-37 298.3 15.7 170 626-813 1-178 (302)
8 PF02170 PAZ: PAZ domain; Int 99.9 1.2E-23 2.7E-28 201.4 11.0 133 338-475 1-135 (135)
9 cd04659 Piwi_piwi-like_ProArk 99.9 7.1E-23 1.5E-27 231.5 15.3 180 602-813 94-283 (404)
10 cd02846 PAZ_argonaute_like PAZ 99.8 1.3E-20 2.7E-25 175.2 13.7 114 337-451 1-114 (114)
11 cd02825 PAZ PAZ domain, named 99.8 1.1E-20 2.4E-25 175.6 12.1 111 337-450 1-114 (115)
12 cd02845 PAZ_piwi_like PAZ doma 99.8 5.5E-19 1.2E-23 163.8 10.1 105 338-451 2-114 (117)
13 cd02844 PAZ_CAF_like PAZ domai 99.5 1.8E-14 3.9E-19 136.5 6.9 83 365-451 27-132 (135)
14 PF08699 DUF1785: Domain of un 99.5 2.5E-14 5.4E-19 112.4 3.4 51 286-337 2-52 (52)
15 cd02843 PAZ_dicer_like PAZ dom 98.7 1.3E-08 2.9E-13 93.3 6.0 68 366-436 38-106 (122)
16 COG1431 Argonaute homolog, imp 97.3 0.0071 1.5E-07 68.7 15.8 191 515-732 305-500 (685)
17 cd06559 Endonuclease_V Endonuc 47.8 90 0.002 32.2 8.5 75 701-793 23-99 (208)
18 PF08459 UvrC_HhH_N: UvrC Heli 45.7 41 0.00088 33.0 5.3 81 702-802 10-96 (155)
19 PF06262 DUF1025: Possibl zinc 30.7 40 0.00086 30.4 2.4 24 784-807 45-82 (97)
20 PF09373 PMBR: Pseudomurein-bi 30.5 54 0.0012 23.2 2.6 22 770-792 11-32 (33)
21 KOG1924 RhoA GTPase effector D 28.5 2.4E+02 0.0051 34.6 8.7 18 410-427 861-882 (1102)
22 COG3824 Predicted Zn-dependent 24.4 39 0.00085 31.4 1.2 14 783-796 79-92 (136)
No 1
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=7.3e-118 Score=1076.75 Aligned_cols=668 Identities=34% Similarity=0.594 Sum_probs=565.4
Q ss_pred CCCcccCCCCCCCCCCCCeEEEEeeEEEeec--CCCcceeeeEEEcc----CCCChHHHHHHHHHHHHHhccCccCCCcc
Q 003516 124 SSKSLSFAPRPGYGQVGTKCIVKANHFFAEL--PDKDLNQYDVTITP----EVASRTVNRAIMAELVRLYKESDLGMRLP 197 (813)
Q Consensus 124 ~~~~~~~~~RP~~Gt~G~~v~l~tN~f~i~~--~~~~iy~YdV~i~p----~~~~k~~~r~i~~~l~~~~~~~~~~~~~~ 197 (813)
+++...+++||||||.|++|.|.||||++.+ +++.||||||+|.| ++.++++++.|++++++.+.. .+.+..+
T Consensus 27 ~~~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~ 105 (900)
T PLN03202 27 SKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSS-DLAGKDF 105 (900)
T ss_pred cccccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHH-hhCCCce
Confidence 4455578999999999999999999999997 47889999999996 455678889999999887654 3544568
Q ss_pred eeeCcceEEEcCCCCCCceeEEEEeccCCCC----------CCC-----------CCCcceEEEEEEEeeeechhhHHHH
Q 003516 198 AYDGRKSLYTAGELPFVWKEFKIKLVDELDG----------ING-----------PKRVREYKVVIKFAARANMHHLGQF 256 (813)
Q Consensus 198 ~yDG~~~Lys~~~L~~~~~~~~v~l~~~~~~----------~~~-----------~~~~~~~~V~Ik~~~~i~l~~l~~~ 256 (813)
+|||+++|||+.+|+.+..++.|++.++... .+. ..+.+.|+|+|++++++++.+|.+|
T Consensus 106 ~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~~ 185 (900)
T PLN03202 106 AYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANA 185 (900)
T ss_pred eecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHHH
Confidence 9999999999999998666788877643100 000 1246889999999999999999999
Q ss_pred hcCCCCCChhHHHHHHHHHHhccccCc-cccCCccccCCCCCCcccCCCCEEEeeeeeeeeeeecceeEEEeeccccccc
Q 003516 257 LAGKRADAPQEALQILDIVLRELSTKR-YCPIGRSFFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFI 335 (813)
Q Consensus 257 l~~~~~~~~~~~iq~Lniilr~~~~~~-~~~~Gr~ff~~~~~~~~~l~~Gle~w~Gf~~Svr~~~~~l~LniD~s~~~F~ 335 (813)
|.|...+.+.+++|+||+|+|+.++.. +..+||+||.+......+++.|+|+|+||++|||+++++++||||+++++||
T Consensus 186 l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F~ 265 (900)
T PLN03202 186 LRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIV 265 (900)
T ss_pred HcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeeee
Confidence 999988888999999999999998654 8889999998664434578999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHhCCCccCCCCChHHHHHHHHHhcCcEEEEeecCCccceEEEecccCCCCCCeeeeccCC--------C
Q 003516 336 EPLPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDN--------S 407 (813)
Q Consensus 336 ~~~~lld~i~~~~~~~~~~r~l~~~~~~~l~~~LkGl~V~~~~~~~~~r~yrI~~i~~~~a~~~~F~~~~~--------g 407 (813)
++++|+|+|.++.+..+ ....++.+++++|+|++|.++|+ +++|+|+||++.++++.+|++++. |
T Consensus 266 ~~~~l~~~l~~~~~~~~----~~~~~~~~~~~~lkGl~V~t~~~---~k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~ 338 (900)
T PLN03202 266 QPGPVVDFLIANQNVRD----PFQIDWSKAKRMLKNLRVKVSPS---NQEYKITGLSEKPCKEQTFSLKQRNGNGNEVET 338 (900)
T ss_pred cCCcHHHHHHHhcCcCC----ccchhHHHHHHHhcCCEEEEecC---CceEEEeeccCCCCcceEEEcccCCcccccCCc
Confidence 99999999998765321 12234567999999999999997 357999999999999999986531 3
Q ss_pred ceeeHHHHHHHHhCCcccCC-CCCeEEecCCCccceecccceeecCCccccccCCHHHHHHHHHHhcCCchhhHHHHHHH
Q 003516 408 TMKSVVEYFQEMYGFTIQHT-HLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPRDRENDILQT 486 (813)
Q Consensus 408 ~~iSV~~Yf~~~Y~i~L~~p-~lPll~~g~~~k~~ylP~Elc~i~~gQ~~~~~L~~~q~~~mik~t~~~P~~R~~~I~~~ 486 (813)
+++||+|||+++||++|+|| ++|||.+|+..+++|||||||.|++||+++++|++.|+++|+++|+.+|.+|.+.|.++
T Consensus 339 ~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~~ 418 (900)
T PLN03202 339 VEITVYDYFVKHRGIELRYSGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDA 418 (900)
T ss_pred ceEEHHHHHHHHcCccccCCCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 47899999999999999996 99999999888899999999999999999999999999999999999999999999999
Q ss_pred HHhccCCchHHHhhcCeeecCcceeeeeeecCCCeeeeccCCCccccCCCCccccccceeeecCceeceeEEEEeCCCcc
Q 003516 487 VQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQ 566 (813)
Q Consensus 487 ~~~~~~~~~~~l~~fGi~I~~~~~~V~aRvLppP~i~y~~~~~~~~v~p~~G~Wnl~~~kf~~~~~i~~W~vi~~~~~~~ 566 (813)
++.++++.+++|++|||+|+++|++|+||+||||+|.|+++. .+.|.+|+||+++.+|+.++.+++|+|++|.+.
T Consensus 419 ~~~~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~---~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~-- 493 (900)
T PLN03202 419 LKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGE---DFFPRNGRWNFNNKKLVEPTKIERWAVVNFSAR-- 493 (900)
T ss_pred HHHhCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCc---ccCCCCCceecCCCEecCCCccceEEEEEecCc--
Confidence 988888888999999999999999999999999999998753 346789999999999999999999999988753
Q ss_pred HHHHHHHHHHHHHHHHhcCcccCCCCcccccCCC--chHHHHHHHHHHHHhhcccCCCCceEEEEEecCC-CCcchhhhh
Q 003516 567 ESVARGFCNELAQMCQVSGMEFNPEPVIPIHNAR--PDQVEKALKHVYHSSMSKTKGKELELLLAILPDN-NGSLYGDLK 643 (813)
Q Consensus 567 ~~~~~~F~~~L~~~~~~~Gm~i~~~p~v~~~~~~--~~~~~~~L~~~~~~~~~~~~~~~~~lv~vIlp~~-~~~~Y~~IK 643 (813)
..+++|++.|.+.|+.+||.+..|..+.....+ ....+..++.+++++.+.++ ..++|||||||++ +.++|+.||
T Consensus 494 -~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~qlv~vIlp~~~~~~~Y~~IK 571 (900)
T PLN03202 494 -CDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLP-GPPQFLLCILPERKNSDIYGPWK 571 (900)
T ss_pred -hhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhcc-CCCeEEEEEEcCCCCcchHHHHH
Confidence 358899999999999999999875433111110 01112234444443332222 4689999999974 678999999
Q ss_pred hhhhhccCceeeeeecccccccCHHHHHHHHHHHHhhcCcccceecccccCCCCcccCCCeEEEEEeecCCCCCCCCCCc
Q 003516 644 RICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPS 723 (813)
Q Consensus 644 ~~~e~~~GI~TQcv~~~t~~K~~~q~~~NI~lKIN~KLGG~N~~l~~~~~~~ip~~~~~~tMIiG~DVtHp~~~~~~~pS 723 (813)
++||+++||+||||... +.++||++|||||||+||||+||.+....+..+|++.+.+|||||+||+||+++....||
T Consensus 572 ~~~~~~~gV~TQcv~~~---~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~~g~~~~pS 648 (900)
T PLN03202 572 KKNLSEFGIVTQCIAPT---RVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDVPS 648 (900)
T ss_pred HHHhhccCcccEEeCcc---ccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEeecCCCCCCCCCc
Confidence 99999999999999654 347899999999999999999999875544557888888999999999999998655799
Q ss_pred EEEEEEecCCCCcccceeEEEecCCceehecccccccCCCCcccchhHHHHHHHHHHHHHc-CCCCCeEEEEcc-----h
Q 003516 724 IAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFRKAT-GQKPLRIIFYRS-----L 797 (813)
Q Consensus 724 iaavVaS~D~~~~tky~~~~~~Q~~rqEiI~~l~~~~~d~~~~~~~~~mi~e~L~~f~~~~-~~lP~rIIiYRD-----Q 797 (813)
|||||||+|++.+++|++.+++|.+++|+|++|+....+ ..+++|+.++|+.|++.+ +.+|++|||||| |
T Consensus 649 iaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~----~~~~~m~~~~L~~~~~~~~~~~P~~IiiyRDGVseGQ 724 (900)
T PLN03202 649 IAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGD----KDDDGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQ 724 (900)
T ss_pred eEEEEeccCcccccceeeEEEecCCCceeeeehhccccc----cchHHHHHHHHHHHHHHcCCCCCceeEEEecCCCHHH
Confidence 999999999767999999999999999999997421111 125899999999999875 699999999999 9
Q ss_pred hHHHHHHHHHHHHhhC
Q 003516 798 FLSVLRVKVEIISICV 813 (813)
Q Consensus 798 f~~Vl~~El~aIr~a~ 813 (813)
|.+|+++|+++|++||
T Consensus 725 ~~~Vl~~Ev~~i~~a~ 740 (900)
T PLN03202 725 FNQVLNIELDQIIEAC 740 (900)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999985
No 2
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-102 Score=935.90 Aligned_cols=651 Identities=39% Similarity=0.614 Sum_probs=561.3
Q ss_pred cccCCCCCCCCCCCCeEEEEeeEEEeec--CCCc-ceeeeEEEccCCCChHHHH-HHHHHHHHHhccCccCCCcceeeCc
Q 003516 127 SLSFAPRPGYGQVGTKCIVKANHFFAEL--PDKD-LNQYDVTITPEVASRTVNR-AIMAELVRLYKESDLGMRLPAYDGR 202 (813)
Q Consensus 127 ~~~~~~RP~~Gt~G~~v~l~tN~f~i~~--~~~~-iy~YdV~i~p~~~~k~~~r-~i~~~l~~~~~~~~~~~~~~~yDG~ 202 (813)
....+.||+.|+.|+++.|.+|||.+++ ++.. ++||+|++.++..++++.+ .+++.+....+...|+...++|||+
T Consensus 42 ~~~~~~rp~~~~~g~~i~~~~n~f~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YDg~ 121 (876)
T KOG1041|consen 42 VRFPMNRPGGGTKGKKIMVLVNHFKVDLKFTEESLFVHYSVGIFNEHGRRKVQCLRFFLDKVKNPELFELKSGGPAYDGQ 121 (876)
T ss_pred ccccccCCCCCccceEEEEeeeEEEeccccCCcceEEEeeeeecCCCCchHHHHHHHHHHHHhccccccccCCcccccCC
Confidence 5677889999999999999999999776 5555 8999999999988887775 5666555554433456666789999
Q ss_pred ceEEEcCCCCCCc--eeEEEEeccCCCCCCCCCCcceEEEEEEEeeeechhhHHHHhcCCCCCChhHHHHHHHHHHhccc
Q 003516 203 KSLYTAGELPFVW--KEFKIKLVDELDGINGPKRVREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELS 280 (813)
Q Consensus 203 ~~Lys~~~L~~~~--~~~~v~l~~~~~~~~~~~~~~~~~V~Ik~~~~i~l~~l~~~l~~~~~~~~~~~iq~Lniilr~~~ 280 (813)
++|||...++... .+|.+..+.+. ..|+++|+++..+.+..+..++.+.....+.+++|+|++++++.+
T Consensus 122 ~~lyt~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ 192 (876)
T KOG1041|consen 122 KTLYTKLELPEGVVTLDFDVISPKEW---------KKFKVSIKKVSEVVLTKLNGFIYTRGENAPRDANQTLDVVLREIA 192 (876)
T ss_pred ceeEeccccccccceEEEEecCCCCC---------cceEEEEEecccccccCccccccCccccCchhHHHHHHHHHHhhh
Confidence 9999987777422 33444443322 119999999998888889888888777788999999999999999
Q ss_pred cCc-cccCCccccCCCCCCcccCCCCEEEeeeeeeeeeeecceeEEEeeccccccccCCcHHHHHHHHhCCCccCCCCCh
Q 003516 281 TKR-YCPIGRSFFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSRTLSD 359 (813)
Q Consensus 281 ~~~-~~~~Gr~ff~~~~~~~~~l~~Gle~w~Gf~~Svr~~~~~l~LniD~s~~~F~~~~~lld~i~~~~~~~~~~r~l~~ 359 (813)
+.. +...|++||.........+++|.|+|.||++|+|+++++++||+|+++++||++.+|++++.++++..+ +.+.+
T Consensus 193 s~~~~~~~~~sff~~~~~~~~~l~~g~e~~~Gf~~s~r~~~~~~~l~id~~~~~F~k~~~~~~~l~~~~~~~~--~~~~~ 270 (876)
T KOG1041|consen 193 TSQGLNNVGYSFFGNDTREPAKLGGGVEIWEGFHKSIRPTQGGLSLNIDVKTTAFYKGTPVIEFLKKILEIKT--RAFHK 270 (876)
T ss_pred chhcccccchheecCCCCCccccCCCceeeeeeeeeeeeccCceEEeeeeeeeeeecCcchHHHHHhhhcCcc--ccccc
Confidence 776 999999999863333345899999999999999999999999999999999999999999999987542 23333
Q ss_pred HHHHHHHHHhcCcEEEEeecCCccceEEEecccCCCCCCeeeeccCC-CceeeHHHHHHHHhCCcccCCCCCeEEecCCC
Q 003516 360 SDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDN-STMKSVVEYFQEMYGFTIQHTHLPCLQVGNQK 438 (813)
Q Consensus 360 ~~~~~l~~~LkGl~V~~~~~~~~~r~yrI~~i~~~~a~~~~F~~~~~-g~~iSV~~Yf~~~Y~i~L~~p~lPll~~g~~~ 438 (813)
.....++++|+||+|.++|+ +.+|.|+|.+++..++.+.+|++++. +.++||+|||+++||++|+||++|||+++..+
T Consensus 271 ~~~~~~~~~lkgL~v~~~h~-~~~r~~~i~~l~~~~a~~~~F~l~~~~~~~~tV~~Yf~~ky~~~Lkyp~LPcv~v~~~~ 349 (876)
T KOG1041|consen 271 DRPLDIKKALKGLKVYVTHG-KRKRKIKIMGLSKKPAKNTTFELKDKKGREITVADYFLEKYNITLKYPDLPCVVVKRPK 349 (876)
T ss_pred ccchhHHHHhhCcEEEEecc-cCcceEEEecccCCcccCceeeccCCCceEEeHHHHHHHhcCccccCCCCccEeecCCC
Confidence 22234999999999999994 45788999999999999999998764 57789999999999999999999999999999
Q ss_pred ccceecccceeecCCccccc-cCCHHHHHHHHHHhcCCchhhHHHHHHHHHhccCCchHHHhhcCeeecCcceeeeeeec
Q 003516 439 KANYLPMEACKIVEGQRYTK-RLNERQITALLKVTCQRPRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEARIL 517 (813)
Q Consensus 439 k~~ylP~Elc~i~~gQ~~~~-~L~~~q~~~mik~t~~~P~~R~~~I~~~~~~~~~~~~~~l~~fGi~I~~~~~~V~aRvL 517 (813)
+.+|||||||.|++|||+.+ +|++.|+++|++.++..|++|++.|..+++...++.|++|++|||.|.++|+.|+||+|
T Consensus 350 ~~~~~PmElc~i~~gQr~~k~kl~~~q~~~m~k~~~~~P~~R~~~i~~~~~~~~~~~d~~l~~fGi~i~~~~~~v~grvL 429 (876)
T KOG1041|consen 350 RENFYPMELCNIVPGQRITKEKLTPNQQSAMIKASAVKPDQRQKLIKKVLKSSLKLSNPYLKEFGIIVVSEPTQVEGRVL 429 (876)
T ss_pred CCcccchhheecccCceeecccCCHHHHHHhhhhhcCCHHHHHHHHHHHHHHhccccchhHHhcCeEEeccccccccccc
Confidence 99999999999999999998 89999999999999999999999999999998888899999999999999999999999
Q ss_pred CCCeeeeccCCCccccCCCCccccccceeeecCceeceeEEEEeCCCccHHHHHHHHHHHHHHHHhcCcccCCCCccccc
Q 003516 518 PAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIH 597 (813)
Q Consensus 518 ppP~i~y~~~~~~~~v~p~~G~Wnl~~~kf~~~~~i~~W~vi~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~~p~v~~~ 597 (813)
|||.|.|+++ .....|..|.|++++++|+.|+.+..|+|++|.+..+.+. +.|+++|.+.|+..||.|.. |. .+
T Consensus 430 ~~P~L~~~~~--~~~~~p~~g~~~~~~k~~~~~~~i~~wavv~f~~~~~~~~-~~f~~~L~~~c~~~Gm~i~~-~~--~~ 503 (876)
T KOG1041|consen 430 PPPKLKFGGN--EMPKNPTPGTWFMRNKKFVKPAKIKSWAVVNFSNSETLRQ-KQFVDELIKICKDKGMEIKR-PR--KW 503 (876)
T ss_pred CCceeeccCC--CCccCCCcCccccccCcccccceEEEEEEEEecccccccH-HHHHHHHHHHHHHcCccccc-cc--cc
Confidence 9999999986 2245778999999999999999999999999998755555 89999999999999999976 55 22
Q ss_pred CCCchHHHHHHHHHHHHhhcccCCCCceEEEEEecCCCCcchhhhhhhhhhccCceeeeeecccccccCHHHHHHHHHHH
Q 003516 598 NARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKI 677 (813)
Q Consensus 598 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~lv~vIlp~~~~~~Y~~IK~~~e~~~GI~TQcv~~~t~~K~~~q~~~NI~lKI 677 (813)
......++..++.+-.. .++ ..++++++||+++++.++|+.||++++..+||+||||+.+++.|..+||++||+|||
T Consensus 504 ~~~~~~~~~~~~~~~~~--~~~-~~~~~li~~I~~~k~~~vy~~lK~~e~t~~gi~tQc~~~~~~~k~~~qtl~Nl~lKi 580 (876)
T KOG1041|consen 504 APTEESLEDMITEKSSM--EKA-AAGVQLVFIILPEKNPDVHDELKYIEETVGGLTTQCIRPTTAKKMSPQTLANLILKI 580 (876)
T ss_pred CcccchhHHHHHHHHhh--hcc-CCCceEEEEEECCCCcchhHHHHHHHHHhcCceeEEeecchhcccchHHHHHHHHHH
Confidence 22222343333322211 112 367999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccceecccccCCCCcccCCCeEEEEEeecCCCCCCCC--CCcEEEEEEecCCCCcccceeEEEecCCceehecc
Q 003516 678 NVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDS--SPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQD 755 (813)
Q Consensus 678 N~KLGG~N~~l~~~~~~~ip~~~~~~tMIiG~DVtHp~~~~~~--~pSiaavVaS~D~~~~tky~~~~~~Q~~rqEiI~~ 755 (813)
|+||||+|+.|.+..+..+| ....+|||||+||+||++++.. .|||||||||+|| +.++|.+.+++|.+|+|+|++
T Consensus 581 N~KlGG~N~~l~~~~~~~~~-~~~~ptl~IG~dVsHp~~~~~~~~~PSiagvv~s~~~-~~~~y~g~~~~Q~~r~e~i~~ 658 (876)
T KOG1041|consen 581 NVKLGGLNYVLVSPRSSRGP-KLDSPTLFIGFDVSHPAAGTSFDGNPSIVGVVYNLDW-HPQKFAGFVRFQKSRQEVIQD 658 (876)
T ss_pred hhccCceeeEEecccccCcc-cCCCCeEEEEEeeeCCCcCCCcCCCccEEEEEecccc-cchhhcceEEEecCChhhhcc
Confidence 99999999998765444444 4568999999999999998765 5999999999998 899999999999999999999
Q ss_pred cccccCCCCcccchhHHHHHHHHHHHHHcCCCCCeEEEEcc-----hhHHHHHHHHHHHHhhC
Q 003516 756 LYKTWHDPVRGTVSGGMIRDLLISFRKATGQKPLRIIFYRS-----LFLSVLRVKVEIISICV 813 (813)
Q Consensus 756 l~~~~~d~~~~~~~~~mi~e~L~~f~~~~~~lP~rIIiYRD-----Qf~~Vl~~El~aIr~a~ 813 (813)
+ .+|++++|..|+++++.+|+||||||| ||.+|+++|+.+||+||
T Consensus 659 ~-------------~~~~~~~l~~f~~~t~~~P~~IIiyRdGvSEgqf~~vl~~E~~~ir~a~ 708 (876)
T KOG1041|consen 659 L-------------GEMIRELLRSFRKSTRKLPDRIVIYRDGVSEGQFSMVLEEELRAIKEAC 708 (876)
T ss_pred h-------------HHHHHHHHHHHHHhccCCCceEEEEecCCccchHHHHHHHHHHHHHHHH
Confidence 6 999999999999999999999999999 99999999999999985
No 3
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.5e-95 Score=795.74 Aligned_cols=589 Identities=23% Similarity=0.380 Sum_probs=516.0
Q ss_pred CCCCCCCeEEEEeeEEEeec-CCCcceeeeEEEccCCCChHHHHHHHHHHHHHhccCccCCCcceeeCcceEEEcCCCCC
Q 003516 135 GYGQVGTKCIVKANHFFAEL-PDKDLNQYDVTITPEVASRTVNRAIMAELVRLYKESDLGMRLPAYDGRKSLYTAGELPF 213 (813)
Q Consensus 135 ~~Gt~G~~v~l~tN~f~i~~-~~~~iy~YdV~i~p~~~~k~~~r~i~~~l~~~~~~~~~~~~~~~yDG~~~Lys~~~L~~ 213 (813)
+.|+.|.+|+|.||||++.. |+|.||||+|+|+|.+++++++++++... . +.+| ..++|||. .||..+++..
T Consensus 87 KtGssG~pv~l~tN~f~l~t~p~w~iyqYhVef~P~ves~rlR~~~L~~h----~-~lig-~~~~FDG~-iLfl~~k~eq 159 (845)
T KOG1042|consen 87 KTGSSGIPVKLQTNFFRLMTRPDWSIYQYHVEFEPDVESRRLREALLYNH----T-DLIG-KGYAFDGT-ILFLKEKFEQ 159 (845)
T ss_pred ccCCCCceEEEEeceeeeccCCCcEEEEEEEeeccccccHHHHHHHHHHh----H-hhhc-cceeecce-eehhhHHHhh
Confidence 57999999999999999988 99999999999999999999888776533 2 2454 46799997 9999999875
Q ss_pred CceeEEEEeccCCCCCCCCCCcceEEEEEEEeeeechhhHHHHhcCCCCCChhHHHHHHHHHHhccc-cCccccCCcccc
Q 003516 214 VWKEFKIKLVDELDGINGPKRVREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELS-TKRYCPIGRSFF 292 (813)
Q Consensus 214 ~~~~~~v~l~~~~~~~~~~~~~~~~~V~Ik~~~~i~l~~l~~~l~~~~~~~~~~~iq~Lniilr~~~-~~~~~~~Gr~ff 292 (813)
+..+ .++ ....+..++|+||+++++.. .++..+|++|+|+|..+ .+++.++||+||
T Consensus 160 ~~te-l~~---------ks~~ge~i~I~ik~~~~~~~-------------t~p~~iqv~NlI~RR~~k~L~L~qigRnyy 216 (845)
T KOG1042|consen 160 KQTE-LVS---------KSRDGELIKITIKLTNELPS-------------TDPQCIQVFNLILRRSMKGLNLTQIGRNYY 216 (845)
T ss_pred hhhe-eec---------ccCCCceEEEEEEEeccccC-------------CChhHHHHHHHHHHHHHhhccHHHhhhccC
Confidence 4321 111 23567899999999998763 45789999999999998 689999999999
Q ss_pred CCCCCCcccCCCCEEEeeeeeeeeeeecceeEEEeeccccccccCCcHHHHHHHHhCCCccCCCCChHHHHHHHHHhcCc
Q 003516 293 SPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGV 372 (813)
Q Consensus 293 ~~~~~~~~~l~~Gle~w~Gf~~Svr~~~~~l~LniD~s~~~F~~~~~lld~i~~~~~~~~~~r~l~~~~~~~l~~~LkGl 372 (813)
+|.... ....+.+++|+||.+|||..+..++|+.|++|++ .+..||+|+|..+... +++.+.++++.+-|+
T Consensus 217 np~~~i-~ip~~km~lwPGy~tSIrq~E~~illctei~hKv-mR~ETvy~~m~~~~~~-------~~~~qe~~~~~~~gl 287 (845)
T KOG1042|consen 217 DPRAKI-EIPEFKMSLWPGYETSIRQHENDILLCTEISHKV-MRTETVYDIMRSCQHN-------TQRFQETVNKNVIGL 287 (845)
T ss_pred CCCccc-ccccccceecCcchhHHHHhhhceeeehhhhhhH-hhhhHHHHHHHHHhhC-------HHHHHHHHHHHhcce
Confidence 998653 2235789999999999999999999999999998 8999999999998763 345788999999999
Q ss_pred EEEEeecCCccceEEEecccCCCCCCeeeeccCCCceeeHHHHHHHHhCCcccCCCCCeEEecCC--------Cccceec
Q 003516 373 KVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHTHLPCLQVGNQ--------KKANYLP 444 (813)
Q Consensus 373 ~V~~~~~~~~~r~yrI~~i~~~~a~~~~F~~~~~g~~iSV~~Yf~~~Y~i~L~~p~lPll~~g~~--------~k~~ylP 444 (813)
.|.|.|+ +++|||++|+|+.++.++|..+| | +||+.|||+++|||.|++-+||+|+...+ .+..++.
T Consensus 288 ivLT~YN---NktyriddvD~~~tP~stF~k~d-g-eIs~veYyk~qYni~I~dl~QPlliS~~k~K~~~g~~~q~~~lI 362 (845)
T KOG1042|consen 288 IVLTRYN---NKTYRIDDVDFSQTPLSTFKKDD-G-EISFVEYYKKQYNIEITDLNQPLLISEPKDKRPKGEPPQLAMLI 362 (845)
T ss_pred EEEEecC---CceeeeeccccCcCccceeeecC-c-eeeHhHHHHHhcCeEEeeCCcceEeccCcccCCCCCCccceeee
Confidence 9999996 57899999999999999999654 4 78999999999999999999999998543 2457999
Q ss_pred ccceeecCCccccccCCHHHHH------HHHHHhcCCchhhHHHHHHHHHhccCCch--HHHhhcCeeecCcceeeeeee
Q 003516 445 MEACKIVEGQRYTKRLNERQIT------ALLKVTCQRPRDRENDILQTVQQNAYDQD--LYAKEFGIKISEKLASVEARI 516 (813)
Q Consensus 445 ~Elc~i~~gQ~~~~~L~~~q~~------~mik~t~~~P~~R~~~I~~~~~~~~~~~~--~~l~~fGi~I~~~~~~V~aRv 516 (813)
||||++ ++||+++++ +|.++|...|++|...+..++..+.-+.+ ..|+.|||+++.+.++|+||+
T Consensus 363 PELc~~-------TGLtd~mr~dF~~Mkama~hTRlsP~qR~~rlr~li~~l~~n~~~~~~lr~Wgi~ld~~l~~v~gRi 435 (845)
T KOG1042|consen 363 PELCFL-------TGLTDEMRSDFQLMKAMAEHTRLSPQQRQDRLRRLIDRLQKNPNSVEELRDWGISLDSNLAEVQGRI 435 (845)
T ss_pred hhhhhc-------cCCcHHHHhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHhcCcccCcchhhcccee
Confidence 999999 589999876 68889999999999999998877654443 468999999999999999999
Q ss_pred cCCCeeeeccCCCccccCCCCcccc--ccceeeecCceeceeEEEEeCCCccHHHHHHHHHHHHHHHHhcCcccCCCCcc
Q 003516 517 LPAPWLKYHENGKEKDCLPQVGQWN--MMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVI 594 (813)
Q Consensus 517 LppP~i~y~~~~~~~~v~p~~G~Wn--l~~~kf~~~~~i~~W~vi~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~~p~v 594 (813)
||+.+|.+++. .....++.++|. ++...++.+..+.+|++++..+ ....++.|++.|.+.+..+||++..|-++
T Consensus 436 l~sEkI~~~~~--~~~~~~~~ADWsr~~R~c~i~~~~~l~~W~vi~p~r--~~~~a~~fi~~l~r~a~~mgm~i~~P~~v 511 (845)
T KOG1042|consen 436 LPSEKILFGNQ--KVPYEGKQADWSREFRTCGILRGSNLDNWAVIYPGR--NNSEAQEFINMLRRVASSMGMQIREPICV 511 (845)
T ss_pred cCccceecCCc--ccCCCcchhhhhhhcccccccccCCCcceEEEecCc--cHHHHHHHHHHHHHhccccceecCCceEE
Confidence 99999999874 123345668994 6778899999999999999988 45689999999999999999999998888
Q ss_pred cccCCCchHHHHHHHHHHHHhhcccCCCCceEEEEEecCCCCcchhhhhhhhhhccCceeeeeecccccccC--HHHHHH
Q 003516 595 PIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKIS--KQYLAN 672 (813)
Q Consensus 595 ~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~lv~vIlp~~~~~~Y~~IK~~~e~~~GI~TQcv~~~t~~K~~--~q~~~N 672 (813)
.+.+++++.|-+++++... ..+++|+||+|+.+++.|+.||++++++..||||||..+|+.+.. .+++.+
T Consensus 512 ~i~ddr~~tYvraiqq~v~--------~D~qmvvcil~~~nk~~Y~sIKK~~cvd~pvPsQ~V~lrTl~~~~~lmSIAtK 583 (845)
T KOG1042|consen 512 EIKDDRPGTYVRAIQQVVG--------ADIQMVVCILPSDNKTRYDSIKKYLCVDCPVPSQCVNLRTLAKRSKLMSIATK 583 (845)
T ss_pred EeCCCChHHHHHHHHHhcc--------CCceEEEEEecCCchhhHHHHHhheeccCCCccceEEEEeecCcchhHHHHHH
Confidence 8889899999888877653 579999999999999999999999999999999999999997653 679999
Q ss_pred HHHHHHhhcCcccceecccccCCCCcccCCCeEEEEEeecCCCCCCCCCCcEEEEEEecCCCCcccceeEEEecCCceeh
Q 003516 673 VSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQEL 752 (813)
Q Consensus 673 I~lKIN~KLGG~N~~l~~~~~~~ip~~~~~~tMIiG~DVtHp~~~~~~~pSiaavVaS~D~~~~tky~~~~~~Q~~rqEi 752 (813)
|+|||||||||..|.++ ||+ +.+||||+||+|.+. ....|++|+|||+| +..|+|+|.+..|...+|+
T Consensus 584 I~lQmnCKlGg~lW~V~------IPL---k~lMiVG~Dv~hd~~--~k~rsvga~VAs~n-~~~tr~fS~v~~~~~~qel 651 (845)
T KOG1042|consen 584 IALQMNCKLGGELWKVE------IPL---KGLMIVGFDVYHDPT--LKGRSVGAFVASMN-NDFTRWFSRVIEQENGQEL 651 (845)
T ss_pred HHHHHhhhhcCcceEEe------eec---ccceEEEEEeecCcc--ccCceEEEEEEeec-cchhhhhhheecccCHHHH
Confidence 99999999999999985 676 789999999999875 45789999999999 6999999999999999999
Q ss_pred ecccccccCCCCcccchhHHHHHHHHHHHHHcCCCCCeEEEEcc-----hhHHHHHHHHHHHHh
Q 003516 753 IQDLYKTWHDPVRGTVSGGMIRDLLISFRKATGQKPLRIIFYRS-----LFLSVLRVKVEIISI 811 (813)
Q Consensus 753 I~~l~~~~~d~~~~~~~~~mi~e~L~~f~~~~~~lP~rIIiYRD-----Qf~~Vl~~El~aIr~ 811 (813)
.+.| +-++..+|++|++.|..+|+||||||| |+.++.++|++.+.+
T Consensus 652 ~d~L-------------~~~~~~ALr~y~~~n~~LPsRIi~YRDGVgDGQLk~l~n~EV~~~~d 702 (845)
T KOG1042|consen 652 ADNL-------------KVFLAKALRQYYEVNRTLPSRIIVYRDGVGDGQLKTLVNYEVPLVCD 702 (845)
T ss_pred HHHH-------------HHHHHHHHHHHHHhcccCCceEEEEecCCCCcccceeeeeccchHHH
Confidence 9999 999999999999999999999999999 999999999995443
No 4
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=1.5e-55 Score=498.84 Aligned_cols=289 Identities=41% Similarity=0.737 Sum_probs=247.7
Q ss_pred HHHhhcCeeecCcceeeeeeecCCCeeeeccCCCccccCCCCccccccceeeecCceeceeEEEEeCCCccH----HHHH
Q 003516 496 LYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQE----SVAR 571 (813)
Q Consensus 496 ~~l~~fGi~I~~~~~~V~aRvLppP~i~y~~~~~~~~v~p~~G~Wnl~~~kf~~~~~i~~W~vi~~~~~~~~----~~~~ 571 (813)
++|++|||+|+++|++|+||+|+||.|.|+++. ....+.+|+||+++++|+.++.+++|+||++.+..+. +.++
T Consensus 1 ~~l~~fGi~i~~~~~~v~grvL~~P~i~y~~~~--~~~~~~~g~W~~~~~~f~~~~~~~~W~vi~~~~~~~~~~~~~~~~ 78 (426)
T cd04657 1 PYLKEFGISVSKEMITVPGRVLPPPKLKYGDSS--KTVPPRNGSWNLRGKKFLEGGPIRSWAVLNFAGPRRSREERADLR 78 (426)
T ss_pred ChhHhCCCEecCCeeEEeEEEcCCceeeccCCc--cccCCCCCceeecCcccCCCcccceEEEEEecCccccchhHHHHH
Confidence 368999999999999999999999999999643 2456789999999999999999999999999864222 4799
Q ss_pred HHHHHHHHHHHhcCcccCCCCcccccCCCchHHHHHHHHHHHHhhcccCCCCceEEEEEecCCCCcchhhhhhhhhhccC
Q 003516 572 GFCNELAQMCQVSGMEFNPEPVIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLG 651 (813)
Q Consensus 572 ~F~~~L~~~~~~~Gm~i~~~p~v~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~lv~vIlp~~~~~~Y~~IK~~~e~~~G 651 (813)
+|++.|.+.|+.+||.+. .... ...+. ++.+++.+.+.. ...++|||||||+++.++|+.||++||.+.|
T Consensus 79 ~F~~~l~~~~~~~g~~~~--~~~~---~~~~~----~~~~~~~~~~~~-~~~~~lv~~ilp~~~~~~Y~~iK~~~~~~~g 148 (426)
T cd04657 79 NFVDQLVKTVIGAGINIT--TAIA---SVEGR----VEELFAKLKQAK-GEGPQLVLVILPKKDSDIYGRIKRLADTELG 148 (426)
T ss_pred HHHHHHHHHHHhcCCccc--cccc---ccchh----HHHHHHHHHhhc-cCCCCEEEEEEcCCCcchHHHHHHHHhhcCC
Confidence 999999999999999987 2211 11122 222332222111 2368999999999888999999999999999
Q ss_pred ceeeeeecccccc-cCHHHHHHHHHHHHhhcCcccceecccccCCCCcccCCCeEEEEEeecCCCCCC-CCCCcEEEEEE
Q 003516 652 IISQCCLTKHVFK-ISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGE-DSSPSIAAVVA 729 (813)
Q Consensus 652 I~TQcv~~~t~~K-~~~q~~~NI~lKIN~KLGG~N~~l~~~~~~~ip~~~~~~tMIiG~DVtHp~~~~-~~~pSiaavVa 729 (813)
|+||||..+++.| .+.||+.||+||||+||||+||.|++.. .+++...+|||||+||+||++++ ...||||||||
T Consensus 149 I~TQci~~~~~~k~~~~~~~~NI~lKin~KlGG~n~~v~~~~---~~~~~~~~tmiiG~Dv~H~~~~~~~~~pSiaa~Va 225 (426)
T cd04657 149 IHTQCVLAKKVTKKGNPQYFANVALKINLKLGGINHSLEPDI---RPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAVVA 225 (426)
T ss_pred cccEEEcccccccccchHHHHHHHHHHHHhcCCEeeeccccc---ccccCCCCEEEEEEeeecCCCCCCCCCCcEEEEEE
Confidence 9999999999976 7899999999999999999999997532 22445689999999999999875 46899999999
Q ss_pred ecCCCCcccceeEEEecCCceehecccccccCCCCcccchhHHHHHHHHHHHHHcCCCCCeEEEEcc-----hhHHHHHH
Q 003516 730 SQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFRKATGQKPLRIIFYRS-----LFLSVLRV 804 (813)
Q Consensus 730 S~D~~~~tky~~~~~~Q~~rqEiI~~l~~~~~d~~~~~~~~~mi~e~L~~f~~~~~~lP~rIIiYRD-----Qf~~Vl~~ 804 (813)
|+|. ++++|.+.+++|++++|+|++| ++|++++|++|++.|+.+|++|||||| ||.+|+++
T Consensus 226 s~d~-~~~~y~~~~~~q~~~~e~i~~l-------------~~~~~~~l~~~~~~~~~~P~~IiiyRDGvsegq~~~v~~~ 291 (426)
T cd04657 226 SVDW-HLAQYPASVRLQSHRQEIIDDL-------------ESMVRELLRAFKKATGKLPERIIYYRDGVSEGQFAQVLNE 291 (426)
T ss_pred ecCC-cccccceEEEEeCCCcchHHHH-------------HHHHHHHHHHHHHHhCCCCceEEEEEcCcCHHHHHHHHHH
Confidence 9995 8999999999999999999998 999999999999999999999999999 99999999
Q ss_pred HHHHHHhhC
Q 003516 805 KVEIISICV 813 (813)
Q Consensus 805 El~aIr~a~ 813 (813)
|+++|++||
T Consensus 292 E~~~i~~a~ 300 (426)
T cd04657 292 ELPAIRKAC 300 (426)
T ss_pred HHHHHHHHH
Confidence 999999985
No 5
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=9.2e-54 Score=488.56 Aligned_cols=314 Identities=25% Similarity=0.385 Sum_probs=276.0
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHHhccCCch--HHHhhcCeeecCcceeeeeeecCCCeeeeccCCCccccCCCCccccc
Q 003516 465 ITALLKVTCQRPRDRENDILQTVQQNAYDQD--LYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNM 542 (813)
Q Consensus 465 ~~~mik~t~~~P~~R~~~I~~~~~~~~~~~~--~~l~~fGi~I~~~~~~V~aRvLppP~i~y~~~~~~~~v~p~~G~Wnl 542 (813)
+++|+++++.+|.+|++.|.++++.+.++.+ ++|++|||+|+++|++|+||+|+||.|.|+++. ...+.+|+|+.
T Consensus 3 m~~l~~~~~~~P~eR~~~i~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~v~~rvL~~P~i~~~~~~---~~~~~~~~w~~ 79 (448)
T cd04658 3 MKELAEHTKLNPKERYDTIRQFIQRIQKNPSVQELLKKWGIELDSNPLKIQGRVLPPEQIIMGNVF---VYANSNADWKR 79 (448)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCchHHHHHHCCeEEcCCceEEeeEEeCCCeEEeCCCc---cCCCCCCCcch
Confidence 5789999999999999999999998777665 589999999999999999999999999998752 23456788865
Q ss_pred --cceeeecCceeceeEEEEeCCCccHHHHHHHHHHHHHHHHhcCcccCCCCcccccCCCchHHHHHHHHHHHHhhcccC
Q 003516 543 --MNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIHNARPDQVEKALKHVYHSSMSKTK 620 (813)
Q Consensus 543 --~~~kf~~~~~i~~W~vi~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~~p~v~~~~~~~~~~~~~L~~~~~~~~~~~~ 620 (813)
.+.+|+.+..+++|+++++.. +.+.++.|++.|.+.|+.+||.+..|.++.+...+.+++.+.|++.+.
T Consensus 80 ~~~~~~~~~~~~~~~W~vi~~~~--~~~~~~~f~~~l~~~~~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~------- 150 (448)
T cd04658 80 EIRNQPLYDAVNLNNWVLIYPSR--DQREAESFLQTLKQVAGPMGIQISPPKIIKVKDDRIETYIRALKDAFR------- 150 (448)
T ss_pred hhcCCcccCCcccCeEEEEEecC--CHHHHHHHHHHHHHHHHHcCCccCCCeEEEeCCCCHHHHHHHHHHhhc-------
Confidence 466789999999999999874 678899999999999999999998866665555555666666655443
Q ss_pred CCCceEEEEEecCCCCcchhhhhhhhhhccCceeeeeeccccccc--CHHHHHHHHHHHHhhcCcccceecccccCCCCc
Q 003516 621 GKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKI--SKQYLANVSLKINVKMGGRNTVLLDAISCRIPL 698 (813)
Q Consensus 621 ~~~~~lv~vIlp~~~~~~Y~~IK~~~e~~~GI~TQcv~~~t~~K~--~~q~~~NI~lKIN~KLGG~N~~l~~~~~~~ip~ 698 (813)
.+++|+|||+|++..++|+.||++|+.+.||+||||..+++.+. ..+++.||+||||+||||+||.+... .
T Consensus 151 -~~~~lvvvilp~~~~~~Y~~iK~~~~~~~gI~tQ~i~~~t~~~~~~~~~~~~ni~lkinaKlGG~~w~l~~~------~ 223 (448)
T cd04658 151 -SDPQLVVIILPGNKKDLYDAIKKFCCVECPVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGIPWTVEIP------P 223 (448)
T ss_pred -CCCcEEEEEECCCCchhHHHHHHHhhcccCcCCEEEehhhcccccccHHHHHHHHHHHHHHhCCcceEeccC------C
Confidence 47899999999988889999999999999999999999999764 56899999999999999999999742 1
Q ss_pred ccCCCeEEEEEeecCCCCCCCCCCcEEEEEEecCCCCcccceeEEEecCCceeh-ecccccccCCCCcccchhHHHHHHH
Q 003516 699 VSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQEL-IQDLYKTWHDPVRGTVSGGMIRDLL 777 (813)
Q Consensus 699 ~~~~~tMIiG~DVtHp~~~~~~~pSiaavVaS~D~~~~tky~~~~~~Q~~rqEi-I~~l~~~~~d~~~~~~~~~mi~e~L 777 (813)
....+|||||+||+||+++ ..|||||+|||+| +++++|++.++.|..++|+ +++| ++|++++|
T Consensus 224 ~~~~~tmiiGidv~h~~~~--~~~Si~a~vas~~-~~~~~~~~~~~~q~~~~e~~~~~l-------------~~~~~~~l 287 (448)
T cd04658 224 FILKNTMIVGIDVYHDTIT--KKKSVVGFVASLN-KSITKWFSKYISQVRGQEEIIDSL-------------GKSMKKAL 287 (448)
T ss_pred CCCCCeEEEEEeeecCCCC--CCCcEEEEEEEcC-CCCceEeeEEEEeCCCceeeHHHH-------------HHHHHHHH
Confidence 2347899999999999873 4699999999999 5899999999999999998 8888 99999999
Q ss_pred HHHHHHcCCCCCeEEEEcc-----hhHHHHHHHHHHHHhhC
Q 003516 778 ISFRKATGQKPLRIIFYRS-----LFLSVLRVKVEIISICV 813 (813)
Q Consensus 778 ~~f~~~~~~lP~rIIiYRD-----Qf~~Vl~~El~aIr~a~ 813 (813)
+.|++.+|.+|++|||||| ||.+|+++|+++|++||
T Consensus 288 ~~y~~~~~~~P~~IiiyRdGvsegq~~~v~~~E~~~i~~a~ 328 (448)
T cd04658 288 KAYKKENKKLPSRIIIYRDGVGDGQLKKVKEYEVPQIKKAI 328 (448)
T ss_pred HHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999999985
No 6
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=2.5e-45 Score=411.79 Aligned_cols=259 Identities=27% Similarity=0.369 Sum_probs=220.5
Q ss_pred ceeeeeeecCCCeeeeccCCCccccCCCCccccccceeeecCcee-ceeEEEEeCCCccHHHHHHHHHHHHHHHHhcCcc
Q 003516 509 LASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTV-SRWACINFSRSVQESVARGFCNELAQMCQVSGME 587 (813)
Q Consensus 509 ~~~V~aRvLppP~i~y~~~~~~~~v~p~~G~Wnl~~~kf~~~~~i-~~W~vi~~~~~~~~~~~~~F~~~L~~~~~~~Gm~ 587 (813)
+++|+||+||||.|.|+++ |++++++|..++.+ +.|+++++.+ +..++|++.|.+.|+.+||.
T Consensus 2 ~~~v~grvL~~p~i~~~~~------------w~~~~~~f~~~~~~~~~W~vi~~~~----~~~~~f~~~l~~~~~~~G~~ 65 (393)
T cd02826 2 PLILKGRVLPKPQILFKNK------------FLRNIGPFEKPAKITNPVAVIAFRN----EEVDDLVKRLADACRQLGMK 65 (393)
T ss_pred ceEEeeEecCCCceEecCC------------ccccCCeeCCCCEeCCeEEEEEccc----HHHHHHHHHHHHHHHhCCCc
Confidence 6899999999999999641 99999999999999 9999999875 34569999999999999999
Q ss_pred cCC-CCcccccCC--CchHHHHHHHHHHHHhhcccCCCCceEEEEEecCCCCcchhhhhhhhhhccCceeeeeecccccc
Q 003516 588 FNP-EPVIPIHNA--RPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFK 664 (813)
Q Consensus 588 i~~-~p~v~~~~~--~~~~~~~~L~~~~~~~~~~~~~~~~~lv~vIlp~~~~~~Y~~IK~~~e~~~GI~TQcv~~~t~~K 664 (813)
+.. ++...+... +.+++.+.|++..+ .+++|||||+|+++.++|+.||++|+.+ ||+||||+.+|+.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~lv~~ilp~~~~~~Y~~iK~~~~~~-gI~tQ~i~~~t~~~ 136 (393)
T cd02826 66 IKEIPIVSWIEDLNNSFKDLKSVFKNAIK--------AGVQLVIFILKEKKPPLHDEIKRLEAKS-DIPSQVIQLKTAKK 136 (393)
T ss_pred cCCCCCcceeecccccHHHHHHHHHHHhh--------cCCCEEEEEEcCCCccHHHHHHHHHhcc-CCceEEEehhhhcc
Confidence 987 444333222 23445555544332 4799999999998889999999999988 99999999999976
Q ss_pred --cCHHHHHHHHHHHHhhcCcccceecccccCCCCcccCCCeEEEEEeecCCCCC-CCCCCcEEEEEEecCCCCccccee
Q 003516 665 --ISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENG-EDSSPSIAAVVASQDWPEVTKYAG 741 (813)
Q Consensus 665 --~~~q~~~NI~lKIN~KLGG~N~~l~~~~~~~ip~~~~~~tMIiG~DVtHp~~~-~~~~pSiaavVaS~D~~~~tky~~ 741 (813)
..++|++||+||||+||||+||.|+.. .+...+|||||+||+||+++ ....||++|+|||+|. . +.|.+
T Consensus 137 ~~~~~~~~~Ni~lkin~KlGG~~~~l~~~------~~~~~~tmiiGiDv~h~~~~~~~~~~si~~~vas~~~-~-~~~g~ 208 (393)
T cd02826 137 MRRLKQTLDNLLRKVNSKLGGINYILDSP------VKLFKSDIFIGFDVSHPDRRTVNGGPSAVGFAANLSN-H-TFLGG 208 (393)
T ss_pred ccccHHHHHHHHHHHhhhhCCeeeEeccC------CCCCCCEEEEEEEeeCCCCCCCCCCCcEEEEEeecCC-c-cccce
Confidence 678999999999999999999999742 12347899999999999886 3457999999999994 4 44556
Q ss_pred EEEecCCceehecccccccCCCCcccchhHHHHHHHHHHHHHcCC-CCCeEEEEcc-----hhHHHHHHHHHHHHhhC
Q 003516 742 LVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFRKATGQ-KPLRIIFYRS-----LFLSVLRVKVEIISICV 813 (813)
Q Consensus 742 ~~~~Q~~rqEiI~~l~~~~~d~~~~~~~~~mi~e~L~~f~~~~~~-lP~rIIiYRD-----Qf~~Vl~~El~aIr~a~ 813 (813)
.++.|..++|++++| ++|++++|+.|+++++. +|++|||||| ||.+|+++|+++|++|+
T Consensus 209 ~~~~~~~~~~~~~~l-------------~~~~~~~L~~y~~~~~~~~P~~IiiyRDGvsegq~~~v~~~e~~~i~~a~ 273 (393)
T cd02826 209 FLYVQPSREVKLQDL-------------GEVIKKCLDGFKKSTGEGLPEKIVIYRDGVSEGEFKRVKEEVEEIIKEAC 273 (393)
T ss_pred EEEEecCccchHHHH-------------HHHHHHHHHHHHHHcCCCCcceeEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 678898899999988 99999999999999999 9999999999 99999999999999885
No 7
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=99.98 E-value=1.8e-32 Score=298.26 Aligned_cols=170 Identities=43% Similarity=0.658 Sum_probs=151.8
Q ss_pred EEEEEecCCCCcchhhhhhhhhhccCceeeeeeccccccc--CHHHHHHHHHHHHhhcCcccceecccccCCCCcccCCC
Q 003516 626 LLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKI--SKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIP 703 (813)
Q Consensus 626 lv~vIlp~~~~~~Y~~IK~~~e~~~GI~TQcv~~~t~~K~--~~q~~~NI~lKIN~KLGG~N~~l~~~~~~~ip~~~~~~ 703 (813)
+||||+|+++.+.|..+|++++.++||+|||+..+++.+. ..+++.||++|||+||||.|+.+.+. +...++ .+
T Consensus 1 ~i~~ii~~~~~~~Y~~iKk~~~~~~gi~tQ~i~~~~~~~~~~~~~~~~ni~lkinaKlGG~n~~~~~~-~~~~~~---~~ 76 (302)
T PF02171_consen 1 LIVVIIPDKNSDNYHAIKKYLERKLGIPTQCILSKTLRKKNKSKQILNNIALKINAKLGGINPWLLDS-PPSIDL---KN 76 (302)
T ss_dssp -EEEEESSSSHHHHHHHHHHHHTTTTCEEEEEEHHHHHTSTHHHHHHHHHHHHHHHHTTTBSEEECSC-SSGSSE---SE
T ss_pred CEEEEEeCCChhHHHHHHHHHccCCCcccEEEccCcccccchHHHHHHHHHHHHHHhCCCeeeeeccc-cccccc---Cc
Confidence 5899999988899999999999999999999999999887 46999999999999999997544321 111112 68
Q ss_pred eEEEEEeecCCCCCCCCCCcEEEEEEecCCCCcccceeEEEecCCceehecccccccCCCCcccchhHHHHHHHHHHHHH
Q 003516 704 TIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFRKA 783 (813)
Q Consensus 704 tMIiG~DVtHp~~~~~~~pSiaavVaS~D~~~~tky~~~~~~Q~~rqEiI~~l~~~~~d~~~~~~~~~mi~e~L~~f~~~ 783 (813)
|||||+||+|++++....||++|+|+|+| ++.++|.+.+..|..++|++++| +++++++|+.|++.
T Consensus 77 ~miIGidv~h~~~~~~~~~sv~g~~~s~~-~~~~~~~~~~~~~~~~~e~~~~l-------------~~~~~~~L~~~~~~ 142 (302)
T PF02171_consen 77 TMIIGIDVSHPSPGSDKNPSVVGFVASFD-SDGSKYFSSVRFQDSGQEIIDNL-------------EEIIKEALKEFKKN 142 (302)
T ss_dssp EEEEEEEEEEESSTCTCSCEEEEEEEEES-TTTCEEEEEEEEECTTCCCHHHH-------------HHHHHHHHHHHHHT
T ss_pred eEEEEEEEEecCcccCCcceeeEEEEecc-CccccccceeEEeccchhhhcch-------------hhHHHHHHHHHHHH
Confidence 99999999999987656799999999999 68999999999999999999998 99999999999999
Q ss_pred cCC-CCCeEEEEcc-----hhHHHHHHHHHHHHhhC
Q 003516 784 TGQ-KPLRIIFYRS-----LFLSVLRVKVEIISICV 813 (813)
Q Consensus 784 ~~~-lP~rIIiYRD-----Qf~~Vl~~El~aIr~a~ 813 (813)
++. +|++|||||| ||.+|+++|+++|++|+
T Consensus 143 ~~~~~P~~IiiyRdGvse~~~~~v~~~Ei~~i~~a~ 178 (302)
T PF02171_consen 143 NGKWLPERIIIYRDGVSEGQFKKVLEEEIEAIKEAI 178 (302)
T ss_dssp TTT-TTSEEEEEEES--GGGHHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEEcccCHHhhcccHHHHHHHHHHHH
Confidence 997 9999999999 99999999999999985
No 8
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille. It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A ....
Probab=99.90 E-value=1.2e-23 Score=201.43 Aligned_cols=133 Identities=32% Similarity=0.582 Sum_probs=109.6
Q ss_pred CcHHHHHHHHhCCCccCCCCChHHHHHHHHHhcCcEEEEeecCCccceEEEecccCCCCCCeeeeccCCCceeeHHHHHH
Q 003516 338 LPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQ 417 (813)
Q Consensus 338 ~~lld~i~~~~~~~~~~r~l~~~~~~~l~~~LkGl~V~~~~~~~~~r~yrI~~i~~~~a~~~~F~~~~~g~~iSV~~Yf~ 417 (813)
++|+|+|.++.+.... .....++++++.|+|++|.++|+++ .+.|+|.+|+++.+++.+|+.+ .|+.+||+|||+
T Consensus 1 ~~vld~~~~~~~~~~~---~~~~~~~~~~~~lkg~~V~~~~~~~-~r~~~I~~i~~~~~~~~~F~~~-~g~~itv~eYf~ 75 (135)
T PF02170_consen 1 QSVLDFLKEIQNFRQR---NNIKFQKKLERALKGLKVTTTYNNN-KRTYKIKGISFDPAPESTFPDN-DGKEITVAEYFK 75 (135)
T ss_dssp HHHHHHHHHHCTCSSH---HHHHHHHHHHHHHTTEEEEETTTTC-CEEEEEEEEEEEETTTSEEEET-TSEEEEHHHHHH
T ss_pred CcHHHHHHHHHhhhcc---cchHHHHHHHHHcCCcEEEEecCCC-ceEEEEeEEECCCCcceeeecC-CCceEEhHHHHH
Confidence 4799999999875421 1123445599999999999999865 4789999999999999999965 478889999999
Q ss_pred HHhCCcccCCCCCeEEecCCCc--cceecccceeecCCccccccCCHHHHHHHHHHhcCC
Q 003516 418 EMYGFTIQHTHLPCLQVGNQKK--ANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQR 475 (813)
Q Consensus 418 ~~Y~i~L~~p~lPll~~g~~~k--~~ylP~Elc~i~~gQ~~~~~L~~~q~~~mik~t~~~ 475 (813)
++||++|+||+||||.++...+ .+|||||||.|++||++.+++.+.+++.|++.+|.+
T Consensus 76 ~~Y~i~L~~p~~Pll~~~~~~~~~~~~lP~Elc~i~~~q~~~~~~~~~~~s~m~r~~~~~ 135 (135)
T PF02170_consen 76 EKYNIRLKYPDLPLLNVKSKKKKQPIYLPPELCFIVPGQRYKKKLFTCQPSIMIRFACSP 135 (135)
T ss_dssp HTCT---SSTTSEEEEECSTTTTTCEEEECCGEEEETTTBB-SS--HHHHHHHHHHHSS-
T ss_pred hhhhcccccCCCCeEEeccCCCCceEEEChhHhcccCCcHHHHhccHHHHHHHHHHHhcC
Confidence 9999999999999999998777 999999999999999999999999999999998864
No 9
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=99.89 E-value=7.1e-23 Score=231.52 Aligned_cols=180 Identities=21% Similarity=0.284 Sum_probs=131.0
Q ss_pred hHHHHHHHHHHHHhhcccCCCCceEEEEEecCCC------CcchhhhhhhhhhccCceeeeeeccccccc--CHHHHHHH
Q 003516 602 DQVEKALKHVYHSSMSKTKGKELELLLAILPDNN------GSLYGDLKRICETDLGIISQCCLTKHVFKI--SKQYLANV 673 (813)
Q Consensus 602 ~~~~~~L~~~~~~~~~~~~~~~~~lv~vIlp~~~------~~~Y~~IK~~~e~~~GI~TQcv~~~t~~K~--~~q~~~NI 673 (813)
+.+..+++....+. ..+++++||++|++. .++|+.||++| .+.||+||||..+|+.+. ..+++.||
T Consensus 94 ~~~~~a~~~~~~~~-----~~~~~~~lvilP~~~~~~~~~~~~Y~~iK~~~-~~~giptQ~v~~~tl~~~~~~~~~~~ni 167 (404)
T cd04659 94 EAIIEAVDLALSES-----SQGVDVVIVVLPEDLKELPEEFDLYDRLKAKL-LRLGIPTQFVREDTLKNRQDLAYVAWNL 167 (404)
T ss_pred HHHHHHHHHHHHhh-----cCCCCEEEEEeCHHHhhcccccCHHHHHHHHH-HhcCCceEEeeHHHcCccccHHHHHHHH
Confidence 34444555544432 246899999999875 78999999997 689999999999999764 67899999
Q ss_pred HHHHHhhcCcccceecccccCCCCcccCCCeEEEEEeecCCCCCCCCCCcEEEEEEecCCCCcccceeEEEecCCceehe
Q 003516 674 SLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELI 753 (813)
Q Consensus 674 ~lKIN~KLGG~N~~l~~~~~~~ip~~~~~~tMIiG~DVtHp~~~~~~~pSiaavVaS~D~~~~tky~~~~~~Q~~rqEiI 753 (813)
++|||+|+||+||.|... ...+|||||+||+|+..+....+++|+| .+.| .. +.+..+...++.+
T Consensus 168 al~i~aKlGG~pW~l~~~--------~~~~~~iIGidv~~~~~~~~~~~~~a~v-f~~~---g~---g~~~~~~~~~~~~ 232 (404)
T cd04659 168 ALALYAKLGGIPWKLDAD--------SDPADLYIGIGFARSRDGEVRVTGCAQV-FDSD---GL---GLILRGAPIEEPT 232 (404)
T ss_pred HHHHHHhcCCCceEcccC--------CCCCeEEEEEEEEEcCCCCEEEEEEEEE-EcCC---CC---EEEEecCccCCcc
Confidence 999999999999999642 2368999999999998642222344433 2323 11 1122233334433
Q ss_pred cccccccCCCCcccchhHHHHHHHHHHHHHcCC-CCCeEEEEcc-hhHHHHHHHHHHHHhhC
Q 003516 754 QDLYKTWHDPVRGTVSGGMIRDLLISFRKATGQ-KPLRIIFYRS-LFLSVLRVKVEIISICV 813 (813)
Q Consensus 754 ~~l~~~~~d~~~~~~~~~mi~e~L~~f~~~~~~-lP~rIIiYRD-Qf~~Vl~~El~aIr~a~ 813 (813)
++- +...+.++++++|..|++.++. +|+||||||| -| .++|+++|++|+
T Consensus 233 ~~~--------~~~~~~~~l~~~l~~y~~~~~~~~P~rIiihrdg~~---~~~E~~~i~~a~ 283 (404)
T cd04659 233 EDR--------SPADLKDLLKRVLEGYRESHRGRDPKRLVLHKDGRF---TDEEIEGLKEAL 283 (404)
T ss_pred ccc--------CHHHHHHHHHHHHHHHHHHcCCCCCeEEEEECCCCC---CHHHHHHHHHHH
Confidence 210 0012399999999999999988 9999999999 64 799999999985
No 10
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.84 E-value=1.3e-20 Score=175.22 Aligned_cols=114 Identities=51% Similarity=0.896 Sum_probs=98.4
Q ss_pred CCcHHHHHHHHhCCCccCCCCChHHHHHHHHHhcCcEEEEeecCCccceEEEecccCCCCCCeeeeccCCCceeeHHHHH
Q 003516 337 PLPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYF 416 (813)
Q Consensus 337 ~~~lld~i~~~~~~~~~~r~l~~~~~~~l~~~LkGl~V~~~~~~~~~r~yrI~~i~~~~a~~~~F~~~~~g~~iSV~~Yf 416 (813)
.++|+|++.++++.... ..+.+.++.+++++|+|++|.++|+++.+|.|+|.||++.++.+.+|+.+++++.+||+|||
T Consensus 1 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~~~F~~~~~~~~isV~dYf 79 (114)
T cd02846 1 AQPVIEFLKEFLGFDTP-LGLSDNDRRKLKKALKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDGEKEISVADYF 79 (114)
T ss_pred CccHHHHHHHHhCcccc-cccchHHHHHHHHHhCCCEEEEEcCCCCCceEEEeeccCCCccceEEEcCCCCcEEEHHHHH
Confidence 36899999999875432 24556788899999999999999986446789999999999989999965443578999999
Q ss_pred HHHhCCcccCCCCCeEEecCCCccceecccceeec
Q 003516 417 QEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIV 451 (813)
Q Consensus 417 ~~~Y~i~L~~p~lPll~~g~~~k~~ylP~Elc~i~ 451 (813)
+++||++|+||+||||++|+..+++|+|||||.|+
T Consensus 80 ~~~y~~~l~~p~lP~v~~g~~~~~~~~P~Elc~i~ 114 (114)
T cd02846 80 KEKYNIRLKYPNLPCLQVGRKGKPNYLPMELCNIV 114 (114)
T ss_pred HHHcCCcccCCCCCEEEeCCCCCCcEecceeEEeC
Confidence 99999999999999999999888999999999984
No 11
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain.
Probab=99.84 E-value=1.1e-20 Score=175.59 Aligned_cols=111 Identities=31% Similarity=0.429 Sum_probs=97.4
Q ss_pred CCcHHHHHHHHhCCCccCCCCChHHHHHHHHHhcCcEEEEeecCCccceEEEecccCCCCCCeeeeccCCCceeeHHHHH
Q 003516 337 PLPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYF 416 (813)
Q Consensus 337 ~~~lld~i~~~~~~~~~~r~l~~~~~~~l~~~LkGl~V~~~~~~~~~r~yrI~~i~~~~a~~~~F~~~~~g~~iSV~~Yf 416 (813)
+++|+|++.++++.++..+.+.+.++.++.++|+|++|.++|++. ++.|+|.+|++.++++. |+.. +|+.+||+|||
T Consensus 1 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~h~~~-~r~y~i~~i~~~~a~~~-f~~~-~~~~isv~dYf 77 (115)
T cd02825 1 ADPVIETMCKFPKDREIDTPLLDSPREEFTKELKGLKVEDTHNPL-NRVYRPDGETRLKAPSQ-LKHS-DGKEITFADYF 77 (115)
T ss_pred CccHHHHHHHHhcccccccccchHHHHHHHHHcCCCEEEEecCCC-ceEEEEeeEECCCChhh-eecC-CCCEEEHHHHH
Confidence 368999999999866555667778889999999999999999753 67899999999999888 7643 46778999999
Q ss_pred HHHhCCcccCCCCCeEEecCC---Cccceecccceee
Q 003516 417 QEMYGFTIQHTHLPCLQVGNQ---KKANYLPMEACKI 450 (813)
Q Consensus 417 ~~~Y~i~L~~p~lPll~~g~~---~k~~ylP~Elc~i 450 (813)
+++||++|+||+||||++|.. .+.+|||||||.|
T Consensus 78 ~~kY~~~l~~p~~Pll~~~~~~~~~~~~~lp~Elc~i 114 (115)
T cd02825 78 KERYNLTLTDLNQPLLIVKFSSKKSYSILLPPELCVI 114 (115)
T ss_pred HHHcCCcccCCCCCEEEecCcccCCCceEEchheEEe
Confidence 999999999999999999987 6789999999987
No 12
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might
Probab=99.78 E-value=5.5e-19 Score=163.83 Aligned_cols=105 Identities=23% Similarity=0.347 Sum_probs=89.4
Q ss_pred CcHHHHHHHHhCCCccCCCCChHHHHHHHHHhcCcEEEEeecCCccceEEEecccCCCCCCeeeeccCCCceeeHHHHHH
Q 003516 338 LPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQ 417 (813)
Q Consensus 338 ~~lld~i~~~~~~~~~~r~l~~~~~~~l~~~LkGl~V~~~~~~~~~r~yrI~~i~~~~a~~~~F~~~~~g~~iSV~~Yf~ 417 (813)
.+++|++.+++... -...+++++++.|+|++|.++|+ ++.|+|++|++++++.++|+.. +|..+||+|||+
T Consensus 2 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~g~~V~t~yn---~k~Y~I~~I~~~~~p~s~F~~~-~~~~~S~~~Yy~ 72 (117)
T cd02845 2 TTVLDRMHKLYRQE-----TDERFREECEKELIGSIVLTRYN---NKTYRIDDIDFDKTPLSTFKKS-DGTEITFVEYYK 72 (117)
T ss_pred eeHHHHHHHHHHhc-----ccHHHHHHHHHHcCCCEEEEeeC---CeEEEEeEecCCCCccccCcCC-CCCeeeHHHHHH
Confidence 47899999988642 11257789999999999999995 5789999999999999999854 345679999999
Q ss_pred HHhCCcccCCCCCeEEecCC--------Cccceecccceeec
Q 003516 418 EMYGFTIQHTHLPCLQVGNQ--------KKANYLPMEACKIV 451 (813)
Q Consensus 418 ~~Y~i~L~~p~lPll~~g~~--------~k~~ylP~Elc~i~ 451 (813)
++||+.|+||+||||+++.+ .+.+|||||||.++
T Consensus 73 ~kY~i~I~~~~qPLL~~~~k~~~~~~~~~~~iyL~pElC~lt 114 (117)
T cd02845 73 KQYNIEITDLNQPLLVSRPKRRDPRGGEKEPIYLIPELCFLT 114 (117)
T ss_pred HHcCCccccCCCCcEEeeccccccCCCCCcEEEEchHHhhhc
Confidence 99999999999999999863 34799999999985
No 13
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.51 E-value=1.8e-14 Score=136.52 Aligned_cols=83 Identities=28% Similarity=0.486 Sum_probs=70.5
Q ss_pred HHHHhcCcEEEEeecCCccceEEEecccCCCCCCeeeeccCCCceeeHHHHHHHHhCCcccCCCCCeEEecC--------
Q 003516 365 IKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHTHLPCLQVGN-------- 436 (813)
Q Consensus 365 l~~~LkGl~V~~~~~~~~~r~yrI~~i~~~~a~~~~F~~~~~g~~iSV~~Yf~~~Y~i~L~~p~lPll~~g~-------- 436 (813)
..+.|+|++|.++|+ ++.|+|++|+ +.+++++|+.+++++.+||+|||+++||+.|+||+||||+++.
T Consensus 27 ~~~~l~g~~V~t~hn---~r~Y~I~~i~-~~~p~s~F~~~~~~~~~Sy~eYy~~kY~i~L~~~~QPLL~~~~~~~~~NlL 102 (135)
T cd02844 27 CACDLKGSVVTAPHN---GRFYVISGIL-DLNANSSFPGKEGLGYATYAEYFKEKYGIVLNHPNQPLLKGKQIFNLHNLL 102 (135)
T ss_pred cHHHhcCCEEEEcCC---CcEEEEEEEc-CCCccCcccCCCCCceeeHHHHHHHHhCceeccCCcceEEEecccccceec
Confidence 467899999999996 5789999999 9999999987654366899999999999999999999999751
Q ss_pred ------C------C---ccceecccceeec
Q 003516 437 ------Q------K---KANYLPMEACKIV 451 (813)
Q Consensus 437 ------~------~---k~~ylP~Elc~i~ 451 (813)
+ . ..++||||||.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~v~L~PELC~~~ 132 (135)
T cd02844 103 HNRFEEKGESEEKEKDRYFVELPPELCSVI 132 (135)
T ss_pred ccccccccccccccccceEEEeChHHhccc
Confidence 0 1 1468999999875
No 14
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO. ; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.
Probab=99.47 E-value=2.5e-14 Score=112.42 Aligned_cols=51 Identities=57% Similarity=1.027 Sum_probs=41.6
Q ss_pred cCCccccCCCCCCcccCCCCEEEeeeeeeeeeeecceeEEEeeccccccccC
Q 003516 286 PIGRSFFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEP 337 (813)
Q Consensus 286 ~~Gr~ff~~~~~~~~~l~~Gle~w~Gf~~Svr~~~~~l~LniD~s~~~F~~~ 337 (813)
.+||+||+++... .+|++|+|+|+|||+||||+.++|+||||+++++||++
T Consensus 2 ~vgrsFF~~~~~~-~~l~~Gle~~rG~~qSvRp~~~~l~lNvDvs~~aF~~p 52 (52)
T PF08699_consen 2 AVGRSFFPPSGGP-VDLGGGLEAWRGFFQSVRPTQGGLLLNVDVSHTAFYKP 52 (52)
T ss_dssp EETTEEEE-------EEETTEEEEEEEEEEEEEETTEEEEEEECCEECCC--
T ss_pred ccccccCCCCCCC-ccCCCcEEEeEeEEeeeEEcCCCCEEEEeCceeeEECc
Confidence 5799999887554 68999999999999999999999999999999999975
No 15
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=98.75 E-value=1.3e-08 Score=93.32 Aligned_cols=68 Identities=19% Similarity=0.281 Sum_probs=59.0
Q ss_pred HHHhcCcEEEEeecCCcc-ceEEEecccCCCCCCeeeeccCCCceeeHHHHHHHHhCCcccCCCCCeEEecC
Q 003516 366 KKALRGVKVEVTHRGTVR-RKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHTHLPCLQVGN 436 (813)
Q Consensus 366 ~~~LkGl~V~~~~~~~~~-r~yrI~~i~~~~a~~~~F~~~~~g~~iSV~~Yf~~~Y~i~L~~p~lPll~~g~ 436 (813)
.+.+.|..|.+.|++... ++|+|.+|.++.++.++|+.+ + .+|++|||+++||+.|++++||||.++.
T Consensus 38 ~~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F~~~--~-~~Ty~eYyk~KY~I~I~~~~QPLL~v~~ 106 (122)
T cd02843 38 AEDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKFPGP--E-YETFEEYYKKKYKLDIQNLNQPLLDVDH 106 (122)
T ss_pred HHHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCCCCC--C-CccHHHHHHHhcCeEeccCCCCcEeecC
Confidence 467899999999975322 689999999999999999843 3 5799999999999999999999999964
No 16
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.0071 Score=68.65 Aligned_cols=191 Identities=17% Similarity=0.135 Sum_probs=109.4
Q ss_pred eecCCCeeeeccCCCccccCCCCccccccceeeecCceeceeEEEEe--CCCccHHHHHHHHHHHHHHHHhcC-ccc--C
Q 003516 515 RILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINF--SRSVQESVARGFCNELAQMCQVSG-MEF--N 589 (813)
Q Consensus 515 RvLppP~i~y~~~~~~~~v~p~~G~Wnl~~~kf~~~~~i~~W~vi~~--~~~~~~~~~~~F~~~L~~~~~~~G-m~i--~ 589 (813)
+.-.+|.|.-++.++.... ...-|+.. -.+.|.....|.-+.. ...--...+..|.+.+....+..+ +.. .
T Consensus 305 d~ek~pdiv~g~~gktti~--n~nl~~yl--py~~p~~~~l~nei~~iv~d~El~~rlk~~~kkv~~~fkn~n~i~~k~e 380 (685)
T COG1431 305 DPEKGPDIVIGTEGKTTID--NVNLFCYL--PYFKPDGTMLWNEISPIVTDSELLTRLKSTIKKVVYGFKNSNGIDWKVE 380 (685)
T ss_pred CcccCCceEecccceeeEe--hhhhhhhh--cccccccceecceeeEEEehhhhhhHHHHHHHHHHHHHHhccchhhhcc
Confidence 4445677776664432111 22334321 1223333445543321 111113457788888888888776 432 2
Q ss_pred CCCcccccCCCchHHHHHHHHHHHHhhcccCCCCceEEEEEecCCCCcchhhhhhhhhhccCceeeeeecccccccCHHH
Q 003516 590 PEPVIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQY 669 (813)
Q Consensus 590 ~~p~v~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~lv~vIlp~~~~~~Y~~IK~~~e~~~GI~TQcv~~~t~~K~~~q~ 669 (813)
. +.+...+.++. ....|..+++++ ....+...-+-++...|+.+|+ .+.-|++|.++-.+..|.-.-+
T Consensus 381 g-~~l~~a~~r~~-~kddl~~iIkei-------d~ee~~k~e~ykdd~~YailKr---ld~~ipsqvil~~n~rk~~Kg~ 448 (685)
T COG1431 381 G-LTLHVAGKRPK-MKDDLTKIIKEI-------DVEELKKQEMYKDDVKYAILKR---LDETIPSQVILDPNNRKPYKGT 448 (685)
T ss_pred c-ceeeecccchh-hhccchhhhhhh-------hhhhhccccccccchHHHHHHh---hcccCcceeeeccccCCcchhh
Confidence 2 22222222221 112333444433 1222333334556678999998 4667999999999988877889
Q ss_pred HHHHHHHHHhhcCcccceecccccCCCCcccCCCeEEEEEeecCCCCCCCCCCcEEEEEEecC
Q 003516 670 LANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQD 732 (813)
Q Consensus 670 ~~NI~lKIN~KLGG~N~~l~~~~~~~ip~~~~~~tMIiG~DVtHp~~~~~~~pSiaavVaS~D 732 (813)
+.|++.|+-+|-+|+++.+.+. ...-+-|+|+||+.-.-+ ...+-|++.-.|
T Consensus 449 ~tnla~~~~~ktlgqpY~~r~~--------~gpvDaivGlDvsr~~~g---n~tV~gct~~f~ 500 (685)
T COG1431 449 KTNLASKRYLKTLGQPYLKRNG--------LGPVDAIVGLDVSRVSEG---NWTVEGCTSCFV 500 (685)
T ss_pred hhHHHHHHHHHhcCCceeeecc--------CCCccceeeeeeeEEeeC---CeEEeeeeEEEe
Confidence 9999999999999999988542 123358999999987632 345545333333
No 17
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=47.82 E-value=90 Score=32.21 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=39.6
Q ss_pred CCCeEEEEEeecCCCCCCCCCCcEEEEEEecCCCCcccceeEEEecCCceehecccccccCCCCcccchhHHHHHH--HH
Q 003516 701 DIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDL--LI 778 (813)
Q Consensus 701 ~~~tMIiG~DVtHp~~~~~~~pSiaavVaS~D~~~~tky~~~~~~Q~~rqEiI~~l~~~~~d~~~~~~~~~mi~e~--L~ 778 (813)
..+.+|-|+|++|... ..-.+|++|. ++|++..-....++.-.-....|..+ -.|+|. |.
T Consensus 23 ~~~~~I~gvDiS~~~~---~~~~vaa~Vv-~~~~~~~~~~~~~~~~~~~~PYIPG~--------------LafRE~p~l~ 84 (208)
T cd06559 23 GEVRLVAGVDVSYKKD---GDLAVAAAVV-LDYPDLEVVETAVAVGEVTFPYIPGL--------------LAFREGPPLL 84 (208)
T ss_pred CCccEEEEEEeeeccC---CCeEEEEEEE-EECCCCcEEEEEEEEEecCCCCcchh--------------HHHhhHHHHH
Confidence 3668999999999752 2345555553 34433333333333332222234444 245555 33
Q ss_pred HHHHHcCCCCCeEEE
Q 003516 779 SFRKATGQKPLRIIF 793 (813)
Q Consensus 779 ~f~~~~~~lP~rIIi 793 (813)
.-.+.-..+|+-|+|
T Consensus 85 ~~~~~l~~~PDlilV 99 (208)
T cd06559 85 EALEKLKTKPDLLLV 99 (208)
T ss_pred HHHHhCCCCCCEEEE
Confidence 333333468998887
No 18
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=45.72 E-value=41 Score=33.03 Aligned_cols=81 Identities=15% Similarity=0.099 Sum_probs=43.9
Q ss_pred CCeEEEEEeecCCCCCCCCCCcEEEEEEecCCCCcccceeEEEecCCceehecccccccCCCCcccchhHHHHHHHHHHH
Q 003516 702 IPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFR 781 (813)
Q Consensus 702 ~~tMIiG~DVtHp~~~~~~~pSiaavVaS~D~~~~tky~~~~~~Q~~rqEiI~~l~~~~~d~~~~~~~~~mi~e~L~~f~ 781 (813)
.|.-|-++|+||-.. .-.|+++|.=.|..-..+.+=.+.+... +-.+|. .+|.|.|..++
T Consensus 10 ~P~rIE~fDiSh~~G----~~~Vgs~Vvf~~G~~~k~~YR~f~i~~~--~~~dDy--------------~~M~Evl~RR~ 69 (155)
T PF08459_consen 10 LPRRIECFDISHIQG----SDTVGSMVVFENGKPDKSEYRRFNIKTV--DGGDDY--------------AAMREVLTRRF 69 (155)
T ss_dssp --SEEEEEEEEECTT----TCEEEEEEEEETTEE-GGG-EEEEEE----STT-HH--------------HHHHHHHHHHH
T ss_pred CCCEEEEEECcccCC----cccEEEEEEEECCccChhhCceEecCCC--CCCcHH--------------HHHHHHHHHHH
Confidence 567899999999764 4468888776663112233334555531 222554 56777776666
Q ss_pred HH----cCCCCCeEEEEcc--hhHHHH
Q 003516 782 KA----TGQKPLRIIFYRS--LFLSVL 802 (813)
Q Consensus 782 ~~----~~~lP~rIIiYRD--Qf~~Vl 802 (813)
+. ...+|+-|||==. |+..++
T Consensus 70 ~~~~~~~~~lPDLilIDGG~gQl~aa~ 96 (155)
T PF08459_consen 70 KRLKEEKEPLPDLILIDGGKGQLNAAK 96 (155)
T ss_dssp CCCHHHT----SEEEESSSHHHHHHHH
T ss_pred hcccccCCCCCCEEEEcCCHHHHHHHH
Confidence 43 3479999998333 776663
No 19
>PF06262 DUF1025: Possibl zinc metallo-peptidase; InterPro: IPR010428 This is a family of bacterial protein with undetermined function.; PDB: 3E11_A.
Probab=30.69 E-value=40 Score=30.37 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=15.9
Q ss_pred cCCCCCeEEEEcc--------------hhHHHHHHHHH
Q 003516 784 TGQKPLRIIFYRS--------------LFLSVLRVKVE 807 (813)
Q Consensus 784 ~~~lP~rIIiYRD--------------Qf~~Vl~~El~ 807 (813)
.+..|.+|++||. +...|+-+|+.
T Consensus 45 ~~~~p~rI~lyR~pl~~~~~~~~eL~~~I~~tlvhEia 82 (97)
T PF06262_consen 45 SGGLPDRIVLYRRPLERRARSREELAELIRDTLVHEIA 82 (97)
T ss_dssp S-B--EEEEEEHHHHHHT-SSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEehHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3588999999999 55666666664
No 20
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=30.53 E-value=54 Score=23.23 Aligned_cols=22 Identities=18% Similarity=0.236 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHcCCCCCeEE
Q 003516 770 GGMIRDLLISFRKATGQKPLRII 792 (813)
Q Consensus 770 ~~mi~e~L~~f~~~~~~lP~rII 792 (813)
.+|. ..+.+|++.||++|..|-
T Consensus 11 ~d~a-~rv~~f~~~ngRlPnyV~ 32 (33)
T PF09373_consen 11 LDMA-SRVNNFYESNGRLPNYVS 32 (33)
T ss_pred HHHH-HHHHHHHHHcCCCCCeee
Confidence 4444 567899999999998774
No 21
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=28.48 E-value=2.4e+02 Score=34.58 Aligned_cols=18 Identities=11% Similarity=0.408 Sum_probs=8.6
Q ss_pred eeHHHHH----HHHhCCcccCC
Q 003516 410 KSVVEYF----QEMYGFTIQHT 427 (813)
Q Consensus 410 iSV~~Yf----~~~Y~i~L~~p 427 (813)
.|+.-|. +++|--.|++|
T Consensus 861 ~TLLHfLae~~e~kypd~l~F~ 882 (1102)
T KOG1924|consen 861 TTLLHFLAEICEEKYPDILKFP 882 (1102)
T ss_pred hHHHHHHHHHHHHhChhhhcch
Confidence 3654444 44554444443
No 22
>COG3824 Predicted Zn-dependent protease [General function prediction only]
Probab=24.36 E-value=39 Score=31.37 Aligned_cols=14 Identities=50% Similarity=0.774 Sum_probs=12.5
Q ss_pred HcCCCCCeEEEEcc
Q 003516 783 ATGQKPLRIIFYRS 796 (813)
Q Consensus 783 ~~~~lP~rIIiYRD 796 (813)
.+|.+|+||.+||-
T Consensus 79 ~~G~~P~rItlYRr 92 (136)
T COG3824 79 YTGELPDRITLYRR 92 (136)
T ss_pred ccCCCCceeeeeHH
Confidence 46889999999997
Done!