Query 003517
Match_columns 813
No_of_seqs 349 out of 2042
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 00:56:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003517.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003517hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 1E-150 3E-155 1349.6 85.1 766 11-783 18-796 (832)
2 KOG1650 Predicted K+/H+-antipo 100.0 3E-122 5E-127 1087.9 57.3 750 15-785 2-768 (769)
3 PRK03562 glutathione-regulated 100.0 4.1E-48 8.8E-53 453.8 51.1 400 36-464 5-412 (621)
4 PRK03659 glutathione-regulated 100.0 3.8E-47 8.3E-52 445.0 52.1 401 37-464 6-412 (601)
5 PRK10669 putative cation:proto 100.0 6.7E-47 1.5E-51 442.3 50.4 414 37-476 7-437 (558)
6 COG0475 KefB Kef-type K+ trans 100.0 2.4E-44 5.1E-49 400.4 45.3 379 36-435 6-389 (397)
7 PRK05326 potassium/proton anti 100.0 4.5E-39 9.7E-44 376.1 40.2 382 35-434 5-391 (562)
8 TIGR00932 2a37 transporter, mo 100.0 8.9E-35 1.9E-39 310.6 31.7 269 46-334 2-273 (273)
9 PF00999 Na_H_Exchanger: Sodiu 100.0 2.2E-39 4.7E-44 363.1 -4.3 371 43-430 3-378 (380)
10 COG4651 RosB Kef-type K+ trans 100.0 7.4E-34 1.6E-38 285.5 31.2 380 32-435 3-392 (408)
11 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 6.4E-27 1.4E-31 270.3 40.6 366 24-402 3-386 (810)
12 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 7.5E-27 1.6E-31 269.5 39.7 366 42-429 4-407 (525)
13 COG0025 NhaP NhaP-type Na+/H+ 99.9 4.2E-24 9.1E-29 240.0 40.0 379 36-430 6-406 (429)
14 TIGR00840 b_cpa1 sodium/hydrog 99.9 9.2E-23 2E-27 235.4 37.1 371 46-431 19-417 (559)
15 COG3263 NhaP-type Na+/H+ and K 99.9 3.7E-22 8.1E-27 210.7 28.3 355 36-411 7-366 (574)
16 KOG1965 Sodium/hydrogen exchan 99.7 1.3E-16 2.9E-21 177.1 23.2 385 37-435 36-459 (575)
17 PRK14853 nhaA pH-dependent sod 99.7 3.9E-15 8.5E-20 163.2 33.4 270 96-399 62-363 (423)
18 KOG4505 Na+/H+ antiporter [Ino 99.7 2.1E-15 4.5E-20 154.8 22.8 343 42-397 20-381 (467)
19 PRK11175 universal stress prot 99.6 2.4E-15 5.1E-20 163.6 16.6 281 454-780 5-299 (305)
20 TIGR00773 NhaA Na+/H+ antiport 99.5 1E-11 2.2E-16 134.0 25.0 270 96-399 52-344 (373)
21 PRK14856 nhaA pH-dependent sod 99.2 6.4E-09 1.4E-13 114.2 28.8 269 95-399 67-398 (438)
22 cd01988 Na_H_Antiporter_C The 99.2 1.3E-10 2.8E-15 109.4 12.8 131 454-606 1-131 (132)
23 KOG1966 Sodium/hydrogen exchan 99.2 7E-12 1.5E-16 138.9 3.0 368 47-431 53-449 (670)
24 PRK09560 nhaA pH-dependent sod 99.1 2.3E-08 5.1E-13 108.2 25.6 269 96-399 59-353 (389)
25 PRK14855 nhaA pH-dependent sod 99.1 6.4E-08 1.4E-12 105.9 28.5 265 96-399 63-383 (423)
26 PRK14854 nhaA pH-dependent sod 99.1 5.4E-08 1.2E-12 104.8 26.0 271 96-399 56-348 (383)
27 PRK09561 nhaA pH-dependent sod 99.1 4.4E-08 9.6E-13 105.8 25.2 269 96-399 59-351 (388)
28 COG3004 NhaA Na+/H+ antiporter 98.9 7.2E-07 1.6E-11 92.6 23.3 256 105-400 71-355 (390)
29 PF06965 Na_H_antiport_1: Na+/ 98.8 3.2E-08 7E-13 106.9 11.3 272 95-400 54-352 (378)
30 cd01989 STK_N The N-terminal d 98.6 1.5E-07 3.2E-12 90.5 10.4 138 625-781 1-145 (146)
31 cd01989 STK_N The N-terminal d 98.6 4.3E-07 9.4E-12 87.2 13.3 140 454-610 1-146 (146)
32 PRK15456 universal stress prot 98.6 3.8E-07 8.2E-12 87.4 10.2 134 453-606 3-141 (142)
33 PRK15005 universal stress prot 98.5 2.8E-07 6E-12 88.3 8.1 135 454-606 4-143 (144)
34 PF00582 Usp: Universal stress 98.5 4.5E-07 9.8E-12 85.1 9.1 133 453-606 3-139 (140)
35 cd01987 USP_OKCHK USP domain i 98.5 5.8E-07 1.3E-11 83.7 9.4 122 454-606 1-123 (124)
36 cd01988 Na_H_Antiporter_C The 98.5 1.4E-06 3E-11 81.8 11.1 130 625-780 1-132 (132)
37 PRK15118 universal stress glob 98.4 1.2E-06 2.6E-11 84.0 10.0 134 453-606 4-137 (144)
38 PRK09982 universal stress prot 98.4 6.6E-07 1.4E-11 85.8 7.5 132 454-606 5-137 (142)
39 PRK15005 universal stress prot 98.3 4.9E-06 1.1E-10 79.6 12.1 138 624-780 3-144 (144)
40 PRK09982 universal stress prot 98.3 1.4E-06 3.1E-11 83.5 8.2 135 623-780 3-138 (142)
41 PF00582 Usp: Universal stress 98.3 2.1E-06 4.5E-11 80.5 8.4 131 624-780 3-140 (140)
42 cd00293 USP_Like Usp: Universa 98.3 6.7E-06 1.4E-10 76.2 11.5 129 454-605 1-129 (130)
43 cd01987 USP_OKCHK USP domain i 98.2 8.4E-06 1.8E-10 75.9 9.9 123 625-779 1-123 (124)
44 PRK10116 universal stress prot 98.2 8.1E-06 1.8E-10 77.9 10.0 134 453-606 4-137 (142)
45 PRK10116 universal stress prot 98.2 2.8E-06 6E-11 81.2 6.3 131 623-780 3-138 (142)
46 PRK11175 universal stress prot 98.1 5.8E-06 1.3E-10 89.8 8.4 144 453-612 153-304 (305)
47 PRK15456 universal stress prot 98.1 1.7E-05 3.8E-10 75.8 10.1 136 623-780 2-142 (142)
48 PRK15118 universal stress glob 98.0 1.1E-05 2.4E-10 77.3 7.3 132 623-781 3-139 (144)
49 PRK12460 2-keto-3-deoxyglucona 98.0 0.0019 4E-08 68.7 23.0 256 105-435 51-309 (312)
50 cd00293 USP_Like Usp: Universa 98.0 3.8E-05 8.1E-10 71.1 9.4 128 625-779 1-130 (130)
51 PF05684 DUF819: Protein of un 97.9 0.028 6E-07 62.7 32.1 294 59-406 24-353 (378)
52 PF03812 KdgT: 2-keto-3-deoxyg 97.6 0.016 3.6E-07 61.3 22.0 89 105-194 51-140 (314)
53 TIGR00698 conserved hypothetic 97.4 0.31 6.8E-06 53.3 30.4 85 55-147 26-110 (335)
54 PF03616 Glt_symporter: Sodium 97.4 0.14 3.1E-06 57.0 28.0 91 285-381 246-342 (368)
55 COG0385 Predicted Na+-dependen 97.3 0.15 3.2E-06 54.9 26.3 146 96-256 35-191 (319)
56 COG0786 GltS Na+/glutamate sym 97.2 0.099 2.2E-06 57.1 23.0 103 275-378 232-341 (404)
57 PRK12652 putative monovalent c 97.2 0.0029 6.2E-08 69.7 11.8 126 622-770 4-144 (357)
58 PF03601 Cons_hypoth698: Conse 97.1 0.28 6.1E-06 53.1 26.1 82 56-147 22-104 (305)
59 TIGR00793 kdgT 2-keto-3-deoxyg 97.1 0.035 7.5E-07 58.5 18.1 89 105-194 51-140 (314)
60 COG0589 UspA Universal stress 97.1 0.0032 6.9E-08 60.2 9.9 143 453-606 6-150 (154)
61 COG0798 ACR3 Arsenite efflux p 97.0 0.38 8.3E-06 51.7 25.4 183 62-256 19-202 (342)
62 PF13593 DUF4137: SBF-like CPA 97.0 0.39 8.4E-06 52.4 25.8 111 98-218 30-145 (313)
63 TIGR00210 gltS sodium--glutama 96.9 0.73 1.6E-05 51.7 27.2 91 285-378 244-337 (398)
64 PF03390 2HCT: 2-hydroxycarbox 96.8 0.24 5.1E-06 55.1 22.6 94 310-404 298-394 (414)
65 PRK12652 putative monovalent c 96.7 0.013 2.8E-07 64.6 12.0 130 453-603 6-146 (357)
66 PRK03562 glutathione-regulated 96.7 0.065 1.4E-06 64.1 18.3 117 267-387 10-127 (621)
67 TIGR00932 2a37 transporter, mo 96.6 0.085 1.8E-06 56.4 17.1 141 273-419 3-145 (273)
68 COG0589 UspA Universal stress 96.5 0.043 9.3E-07 52.3 12.7 145 623-782 5-153 (154)
69 TIGR00832 acr3 arsenical-resis 96.5 0.95 2.1E-05 49.7 24.3 103 102-215 46-152 (328)
70 PRK05274 2-keto-3-deoxyglucona 96.4 0.24 5.2E-06 53.9 19.0 46 106-151 54-99 (326)
71 PRK03659 glutathione-regulated 96.4 0.14 3E-06 61.1 18.5 115 267-385 10-125 (601)
72 COG3180 AbrB Putative ammonia 96.3 2.1 4.6E-05 46.7 31.2 300 37-399 7-318 (352)
73 COG3493 CitS Na+/citrate sympo 96.3 0.25 5.4E-06 53.4 17.7 84 319-404 327-413 (438)
74 PF05145 AmoA: Putative ammoni 96.3 2.4 5.1E-05 46.4 27.6 128 267-401 157-287 (318)
75 COG0475 KefB Kef-type K+ trans 96.2 0.2 4.3E-06 56.6 17.8 152 267-426 11-168 (397)
76 PRK10669 putative cation:proto 96.2 0.19 4.2E-06 59.4 18.3 133 269-407 13-146 (558)
77 COG2855 Predicted membrane pro 96.0 0.096 2.1E-06 56.3 13.1 111 280-393 31-141 (334)
78 PF03956 DUF340: Membrane prot 95.9 0.087 1.9E-06 52.9 11.5 129 64-216 2-135 (191)
79 PF03601 Cons_hypoth698: Conse 95.9 0.29 6.3E-06 53.0 16.3 128 268-398 4-137 (305)
80 PF01758 SBF: Sodium Bile acid 95.7 0.75 1.6E-05 46.1 17.5 106 103-219 2-111 (187)
81 TIGR00841 bass bile acid trans 95.7 3.1 6.7E-05 44.8 23.3 48 102-150 11-62 (286)
82 PRK05326 potassium/proton anti 95.5 0.3 6.5E-06 57.9 16.3 117 269-388 13-132 (562)
83 TIGR00783 ccs citrate carrier 95.3 2 4.3E-05 47.0 19.9 119 285-404 203-327 (347)
84 PF06826 Asp-Al_Ex: Predicted 94.9 0.81 1.8E-05 45.0 14.3 127 43-185 4-136 (169)
85 TIGR00698 conserved hypothetic 94.8 1.2 2.5E-05 48.9 16.7 123 269-394 9-139 (335)
86 TIGR00844 c_cpa1 na(+)/h(+) an 94.7 0.83 1.8E-05 55.1 16.3 70 318-389 75-146 (810)
87 TIGR03802 Asp_Ala_antiprt aspa 94.6 0.27 5.9E-06 58.0 12.1 81 41-137 15-96 (562)
88 PRK03818 putative transporter; 94.5 1.1 2.4E-05 52.8 16.9 127 40-184 10-141 (552)
89 PLN03159 cation/H(+) antiporte 94.4 1.1 2.3E-05 55.6 17.0 43 621-663 456-500 (832)
90 COG2855 Predicted membrane pro 93.6 13 0.00028 40.3 25.1 86 55-150 32-117 (334)
91 PRK04972 putative transporter; 93.2 0.65 1.4E-05 54.8 11.7 119 41-184 17-140 (558)
92 PRK10490 sensor protein KdpD; 93.0 0.5 1.1E-05 59.2 11.0 124 451-607 249-373 (895)
93 TIGR01625 YidE_YbjL_dupl AspT/ 92.9 0.74 1.6E-05 44.6 9.6 114 60-187 21-139 (154)
94 TIGR00831 a_cpa1 Na+/H+ antipo 92.8 1.2 2.6E-05 52.3 13.2 115 270-390 6-123 (525)
95 TIGR03082 Gneg_AbrB_dup membra 92.1 1.2 2.7E-05 43.2 10.2 97 44-154 3-101 (156)
96 TIGR03082 Gneg_AbrB_dup membra 91.6 7 0.00015 37.9 14.8 121 271-398 4-127 (156)
97 COG1346 LrgB Putative effector 91.6 13 0.00028 38.1 16.8 111 306-429 61-171 (230)
98 TIGR03802 Asp_Ala_antiprt aspa 91.4 1.8 3.8E-05 51.2 12.4 116 57-186 412-531 (562)
99 PF03616 Glt_symporter: Sodium 91.0 3.6 7.8E-05 45.9 13.7 116 318-434 66-187 (368)
100 COG2985 Predicted permease [Ge 89.8 2.2 4.9E-05 47.9 10.4 78 102-188 62-146 (544)
101 PF03547 Mem_trans: Membrane t 89.8 2.7 5.8E-05 47.2 11.7 136 289-432 9-147 (385)
102 PRK04288 antiholin-like protei 89.5 28 0.00061 36.0 17.8 108 309-429 67-174 (232)
103 TIGR00210 gltS sodium--glutama 89.0 40 0.00087 38.0 19.9 116 318-434 66-187 (398)
104 PRK04972 putative transporter; 87.4 5.5 0.00012 47.0 12.4 132 41-186 386-526 (558)
105 TIGR00946 2a69 he Auxin Efflux 87.2 15 0.00032 40.1 15.1 134 58-213 180-314 (321)
106 TIGR00808 malonate_madM malona 87.1 8.5 0.00018 38.4 11.3 106 41-153 18-133 (254)
107 PRK03818 putative transporter; 86.9 5.4 0.00012 47.1 11.9 106 63-182 403-513 (552)
108 PRK10490 sensor protein KdpD; 86.8 2.9 6.3E-05 52.5 10.2 124 622-779 249-372 (895)
109 PF03956 DUF340: Membrane prot 85.9 8.6 0.00019 38.7 11.1 49 347-395 58-106 (191)
110 COG2205 KdpD Osmosensitive K+ 85.4 4.2 9.1E-05 48.8 9.8 125 450-605 246-371 (890)
111 COG4651 RosB Kef-type K+ trans 84.9 5.7 0.00012 42.1 9.4 131 267-405 11-144 (408)
112 PF05145 AmoA: Putative ammoni 84.6 10 0.00022 41.5 11.9 102 39-154 155-258 (318)
113 PRK10711 hypothetical protein; 84.5 41 0.00089 34.8 15.4 83 343-429 87-169 (231)
114 PF03977 OAD_beta: Na+-transpo 84.0 3.4 7.4E-05 44.4 7.5 110 318-435 68-179 (360)
115 COG0025 NhaP NhaP-type Na+/H+ 83.6 27 0.00059 39.9 15.4 71 319-391 64-136 (429)
116 TIGR00659 conserved hypothetic 83.5 58 0.0013 33.6 16.8 83 343-429 86-168 (226)
117 PRK12460 2-keto-3-deoxyglucona 83.5 10 0.00022 40.9 10.8 75 63-150 169-243 (312)
118 TIGR03136 malonate_biotin Na+- 82.7 20 0.00043 39.3 12.6 112 316-435 102-216 (399)
119 TIGR02432 lysidine_TilS_N tRNA 82.4 6.7 0.00015 39.1 8.8 37 625-661 1-37 (189)
120 PF00999 Na_H_Exchanger: Sodiu 82.0 0.42 9E-06 53.6 -0.1 112 272-387 6-123 (380)
121 COG0786 GltS Na+/glutamate sym 80.1 46 0.00099 37.0 14.5 116 318-434 68-188 (404)
122 PF04172 LrgB: LrgB-like famil 77.3 87 0.0019 32.1 14.8 82 343-428 76-157 (215)
123 TIGR00930 2a30 K-Cl cotranspor 76.7 2.2E+02 0.0048 36.2 42.8 104 452-579 575-683 (953)
124 PF01171 ATP_bind_3: PP-loop f 73.9 15 0.00033 36.4 8.4 91 625-741 1-106 (182)
125 COG2431 Predicted membrane pro 73.7 82 0.0018 33.3 13.5 77 62-151 108-188 (297)
126 cd01984 AANH_like Adenine nucl 73.3 4.1 8.8E-05 34.8 3.6 49 550-603 35-83 (86)
127 PRK09903 putative transporter 72.9 61 0.0013 35.3 13.6 109 58-186 171-280 (314)
128 COG3263 NhaP-type Na+/H+ and K 70.8 56 0.0012 36.8 12.1 75 313-388 59-133 (574)
129 COG3329 Predicted permease [Ge 65.7 1.5E+02 0.0033 31.8 13.5 119 286-410 16-137 (372)
130 cd01993 Alpha_ANH_like_II This 64.0 41 0.00089 33.0 9.2 38 625-662 1-40 (185)
131 COG3180 AbrB Putative ammonia 62.9 2.4E+02 0.0053 31.1 15.1 120 268-395 12-135 (352)
132 PF02040 ArsB: Arsenical pump 62.2 2.8E+02 0.0062 31.6 23.6 37 176-212 117-153 (423)
133 COG2985 Predicted permease [Ge 61.8 36 0.00077 38.8 8.7 112 62-187 397-511 (544)
134 KOG2310 DNA repair exonuclease 61.8 11 0.00023 43.2 4.6 77 552-631 41-124 (646)
135 cd01992 PP-ATPase N-terminal d 61.3 42 0.00092 33.0 8.7 37 625-661 1-37 (185)
136 PRK03359 putative electron tra 58.9 46 0.001 35.1 8.7 34 628-661 30-64 (256)
137 PF05982 DUF897: Domain of unk 58.6 47 0.001 36.0 8.7 106 63-182 183-288 (327)
138 PRK15475 oxaloacetate decarbox 58.1 20 0.00044 39.1 5.8 130 316-449 131-265 (433)
139 PRK15476 oxaloacetate decarbox 57.9 21 0.00045 39.1 5.8 130 316-449 131-265 (433)
140 PRK15477 oxaloacetate decarbox 57.8 21 0.00045 39.1 5.8 130 316-449 131-265 (433)
141 TIGR01109 Na_pump_decarbB sodi 57.1 41 0.00089 36.3 7.8 112 316-435 60-179 (354)
142 TIGR00946 2a69 he Auxin Efflux 57.1 2.9E+02 0.0062 30.0 27.6 135 287-429 182-319 (321)
143 COG2205 KdpD Osmosensitive K+ 56.8 63 0.0014 39.3 10.0 122 623-779 248-372 (890)
144 COG0679 Predicted permeases [G 55.8 2.3E+02 0.0051 30.7 13.9 101 288-391 11-113 (311)
145 PF05684 DUF819: Protein of un 54.9 1.8E+02 0.0039 32.7 13.0 96 313-413 52-151 (378)
146 cd01984 AANH_like Adenine nucl 53.8 14 0.0003 31.4 3.2 33 626-659 1-33 (86)
147 KOG0573 Asparagine synthase [A 53.6 67 0.0014 36.2 8.9 100 588-717 225-328 (520)
148 PRK04125 murein hydrolase regu 53.0 1.8E+02 0.004 27.7 10.7 38 321-360 68-107 (141)
149 COG3969 Predicted phosphoadeno 52.5 24 0.00052 38.2 5.2 37 623-659 27-64 (407)
150 TIGR00783 ccs citrate carrier 50.8 1.8E+02 0.0038 32.2 11.6 92 53-151 196-291 (347)
151 PF13593 DUF4137: SBF-like CPA 50.3 2.1E+02 0.0046 31.1 12.5 91 289-382 7-98 (313)
152 TIGR03869 F420-0_ABCperm propo 50.1 3.8E+02 0.0083 29.4 16.4 58 53-111 47-104 (325)
153 TIGR02185 Trep_Strep conserved 50.0 2.8E+02 0.0061 27.8 16.2 24 347-370 161-184 (189)
154 PF09605 Trep_Strep: Hypotheti 49.6 2.8E+02 0.0061 27.7 16.9 127 239-370 38-181 (186)
155 COG5505 Predicted integral mem 49.1 3.8E+02 0.0081 29.0 29.7 84 318-405 275-358 (384)
156 TIGR01625 YidE_YbjL_dupl AspT/ 48.8 1.1E+02 0.0023 29.8 8.7 87 289-375 24-116 (154)
157 PRK10660 tilS tRNA(Ile)-lysidi 47.7 58 0.0012 37.3 7.9 58 624-702 16-74 (436)
158 TIGR02039 CysD sulfate adenyly 47.1 43 0.00092 36.1 6.2 37 625-661 21-57 (294)
159 PRK14853 nhaA pH-dependent sod 46.2 3.6E+02 0.0078 30.7 13.5 25 311-335 60-84 (423)
160 PRK12342 hypothetical protein; 45.2 72 0.0016 33.6 7.5 33 628-661 29-61 (254)
161 TIGR03136 malonate_biotin Na+- 44.5 4.8E+02 0.011 29.0 22.4 75 266-344 232-306 (399)
162 COG3748 Predicted membrane pro 43.1 4.7E+02 0.01 28.4 13.0 55 303-359 212-266 (407)
163 PF13194 DUF4010: Domain of un 42.4 3.9E+02 0.0085 27.3 17.4 28 271-298 136-164 (211)
164 COG1570 XseA Exonuclease VII, 41.8 31 0.00067 39.0 4.3 54 691-748 149-208 (440)
165 PRK12563 sulfate adenylyltrans 41.3 44 0.00096 36.3 5.3 37 625-661 39-75 (312)
166 PRK04125 murein hydrolase regu 41.1 3.3E+02 0.0071 26.0 10.9 28 35-62 7-34 (141)
167 COG1346 LrgB Putative effector 40.4 4.4E+02 0.0095 27.3 18.7 97 106-212 71-168 (230)
168 TIGR01109 Na_pump_decarbB sodi 39.4 5.4E+02 0.012 28.1 18.7 74 266-342 194-267 (354)
169 COG2086 FixA Electron transfer 39.4 94 0.002 32.9 7.2 34 628-661 31-65 (260)
170 KOG1650 Predicted K+/H+-antipo 39.3 3E+02 0.0066 34.0 12.6 65 102-174 313-377 (769)
171 PF03812 KdgT: 2-keto-3-deoxyg 38.7 1.3E+02 0.0029 32.5 8.2 70 65-147 176-245 (314)
172 PRK05253 sulfate adenylyltrans 38.4 86 0.0019 34.0 7.0 38 624-661 28-65 (301)
173 PF01012 ETF: Electron transfe 38.3 83 0.0018 30.4 6.4 27 634-660 15-41 (164)
174 COG1646 Predicted phosphate-bi 38.3 83 0.0018 32.5 6.3 61 540-608 17-78 (240)
175 PF02601 Exonuc_VII_L: Exonucl 37.9 42 0.0009 36.6 4.6 50 690-741 27-85 (319)
176 COG2035 Predicted membrane pro 37.4 5.3E+02 0.012 27.4 18.0 39 34-74 59-97 (276)
177 cd01713 PAPS_reductase This do 37.2 83 0.0018 30.0 6.2 35 625-660 1-35 (173)
178 COG3371 Predicted membrane pro 36.5 2.4E+02 0.0052 28.0 8.9 61 57-129 73-133 (181)
179 PF01507 PAPS_reduct: Phosphoa 36.0 77 0.0017 30.6 5.8 32 625-660 1-32 (174)
180 PF04172 LrgB: LrgB-like famil 35.6 5.1E+02 0.011 26.6 16.3 89 110-211 62-150 (215)
181 PF03977 OAD_beta: Na+-transpo 35.4 6.4E+02 0.014 27.7 25.4 252 40-343 4-268 (360)
182 PRK14854 nhaA pH-dependent sod 34.9 2.2E+02 0.0047 31.8 9.4 25 312-336 55-79 (383)
183 COG4059 MtrE Tetrahydromethano 34.6 92 0.002 31.5 5.8 106 3-133 32-140 (304)
184 COG0037 MesJ tRNA(Ile)-lysidin 34.6 1.5E+02 0.0032 31.7 8.3 37 624-662 22-58 (298)
185 PRK00972 tetrahydromethanopter 34.3 2.3E+02 0.005 29.6 8.7 141 2-172 32-175 (292)
186 TIGR00840 b_cpa1 sodium/hydrog 33.6 8.8E+02 0.019 28.8 17.3 73 318-392 69-150 (559)
187 TIGR01113 mtrE N5-methyltetrah 32.8 2.9E+02 0.0062 28.8 9.0 142 2-172 25-169 (283)
188 TIGR02359 thiW thiW protein. L 32.6 4.8E+02 0.01 25.4 12.3 48 62-114 34-84 (160)
189 PF04206 MtrE: Tetrahydrometha 32.5 2.7E+02 0.0059 28.7 8.7 142 2-172 25-169 (269)
190 TIGR00793 kdgT 2-keto-3-deoxyg 32.2 3E+02 0.0065 29.7 9.5 71 65-148 176-246 (314)
191 PRK09535 btuC corrinoid ABC tr 31.6 7.7E+02 0.017 27.5 16.8 24 54-77 90-113 (366)
192 PRK01658 holin-like protein; V 30.9 4.4E+02 0.0095 24.4 11.0 97 35-142 4-105 (122)
193 COG0239 CrcB Integral membrane 30.8 4.4E+02 0.0095 24.6 9.4 42 325-366 78-119 (126)
194 KOG4050 Glutamate transporter 30.8 5.1E+02 0.011 25.2 10.0 12 305-316 155-166 (188)
195 PF01032 FecCD: FecCD transpor 28.5 5.3E+02 0.011 28.0 11.2 62 50-112 33-94 (311)
196 PRK14208 camphor resistance pr 28.5 3.9E+02 0.0084 24.9 8.7 39 325-363 77-115 (126)
197 cd01118 ArsB_permease Anion pe 27.7 9.1E+02 0.02 27.1 21.9 24 50-73 10-33 (416)
198 PF03652 UPF0081: Uncharacteri 27.6 1.6E+02 0.0034 27.8 6.1 61 549-612 37-98 (135)
199 PF14362 DUF4407: Domain of un 27.5 6.4E+02 0.014 27.1 11.7 86 345-432 17-108 (301)
200 COG1883 OadB Na+-transporting 27.4 14 0.00031 38.8 -1.1 179 268-459 21-214 (375)
201 PRK01821 hypothetical protein; 27.2 5.4E+02 0.012 24.3 11.2 37 322-360 71-109 (133)
202 PF04018 DUF368: Domain of unk 27.1 7.7E+02 0.017 26.1 17.6 41 32-74 56-96 (257)
203 PRK05274 2-keto-3-deoxyglucona 26.8 7.1E+02 0.015 27.3 11.7 44 105-148 205-248 (326)
204 PRK14856 nhaA pH-dependent sod 26.8 2.7E+02 0.0059 31.7 8.6 26 312-337 67-92 (438)
205 PF11299 DUF3100: Protein of u 26.7 2.9E+02 0.0062 28.7 7.9 138 65-218 26-165 (241)
206 TIGR00342 thiazole biosynthesi 26.3 2.7E+02 0.006 31.1 8.7 37 622-662 171-207 (371)
207 PRK09777 fecD iron-dicitrate t 26.3 8.8E+02 0.019 26.5 17.1 57 54-111 46-102 (318)
208 PRK12933 secD preprotein trans 26.2 9.6E+02 0.021 28.7 13.2 16 241-256 582-597 (604)
209 PRK14855 nhaA pH-dependent sod 26.0 3.4E+02 0.0075 30.8 9.2 27 312-338 62-88 (423)
210 PRK01821 hypothetical protein; 24.9 5.9E+02 0.013 24.0 10.5 26 36-61 10-35 (133)
211 KOG2718 Na+-bile acid cotransp 24.6 2E+02 0.0044 32.0 7.0 32 103-134 117-148 (371)
212 PRK10696 tRNA 2-thiocytidine b 24.2 2.4E+02 0.0051 29.7 7.4 37 624-660 30-68 (258)
213 PRK14226 camphor resistance pr 23.5 6.2E+02 0.013 23.7 9.5 12 288-299 41-52 (130)
214 KOG1965 Sodium/hydrogen exchan 23.2 2.1E+02 0.0046 33.6 7.0 69 318-390 102-179 (575)
215 PRK04148 hypothetical protein; 23.1 1E+02 0.0022 29.1 3.8 32 544-575 83-114 (134)
216 PRK00536 speE spermidine synth 22.9 2E+02 0.0043 30.5 6.3 30 623-659 73-102 (262)
217 TIGR02230 ATPase_gene1 F0F1-AT 22.6 1.8E+02 0.0038 26.1 4.9 39 135-173 51-89 (100)
218 PRK00286 xseA exodeoxyribonucl 22.3 99 0.0021 35.4 4.3 49 691-741 149-202 (438)
219 PRK14212 camphor resistance pr 22.1 3.1E+02 0.0067 25.6 6.8 19 237-255 9-27 (128)
220 KOG2722 Predicted membrane pro 22.1 1.8E+02 0.0039 32.1 5.8 93 308-403 41-137 (408)
221 PF03419 Peptidase_U4: Sporula 22.1 9.9E+02 0.021 25.6 11.9 21 95-115 57-77 (293)
222 PRK01663 C4-dicarboxylate tran 21.6 1.1E+03 0.025 26.8 12.6 35 117-151 66-100 (428)
223 COG0679 Predicted permeases [G 21.5 1E+03 0.023 25.6 33.3 138 286-429 167-306 (311)
224 PF03686 UPF0146: Uncharacteri 21.5 1.4E+02 0.003 27.9 4.2 33 543-575 75-107 (127)
225 cd01995 ExsB ExsB is a transcr 20.4 4.9E+02 0.011 25.0 8.3 32 625-660 1-32 (169)
226 TIGR00237 xseA exodeoxyribonuc 20.3 1.4E+02 0.0031 34.1 5.0 49 691-741 143-197 (432)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=1.2e-150 Score=1349.61 Aligned_cols=766 Identities=52% Similarity=0.924 Sum_probs=690.5
Q ss_pred CCCCCCccCCCCcccCCCCCCccHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhhcccccCCchhhhccccC
Q 003517 11 ACPAPMKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFP 90 (813)
Q Consensus 11 ~c~~~~~~~~~g~~~g~~~~~~~l~~~l~~i~lil~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp 90 (813)
+|+.+.+.+|+|+|+|+||++|++|++++|+++++++++++++++||+|||+++|||++|+++||+++|+++.+.+.+||
T Consensus 18 ~c~~~~~~~s~g~~~g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp 97 (832)
T PLN03159 18 VCYAPMMITTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFP 97 (832)
T ss_pred ccccCCCccCCcccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCC
Confidence 69976688999999999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHH
Q 003517 91 KKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVS 170 (813)
Q Consensus 91 ~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ 170 (813)
.++.+.+++++++|++++||++|+|+|++.+||++|+++.+|+.++++|+++|++++++++.. ........+++++|++
T Consensus 98 ~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~-~~~~~~~~~~l~~g~a 176 (832)
T PLN03159 98 LRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQV-SRNVHQGTFILFLGVA 176 (832)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccchhHHHHHHHHH
Confidence 888889999999999999999999999999999999999999999999999999888877432 1112223457899999
Q ss_pred HhhccHHHHHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003517 171 LSITAFPVLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSS-SSSLIAVWVLLSGAAFVVFAVFVIRPVL 249 (813)
Q Consensus 171 ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~v~~~~~ 249 (813)
+|.||+|+++++|+|+|+++++.||+++++++++|+++|++++++..+... ......+|.++..+++++++.+++||++
T Consensus 177 lS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~l~~~l~~~~f~~~~~~v~r~~~ 256 (832)
T PLN03159 177 LSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVVRPGI 256 (832)
T ss_pred HHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999888766543 2234456777777888888889999999
Q ss_pred HHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHh
Q 003517 250 SLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAAS 329 (813)
Q Consensus 250 ~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~ 329 (813)
.|+.|+++++++.++.++.++++++++++++++.+|+|+++|||++|+++|+ +|+++.+.+|+++++.++|+|+||+++
T Consensus 257 ~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~-~~~~~~l~ekle~~~~~lflPlFFv~v 335 (832)
T PLN03159 257 WWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGVTLIEKLEDFVSGLLLPLFFAIS 335 (832)
T ss_pred HHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCC-cchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888888899999999999999999999999999999999999997 789999999999999999999999999
Q ss_pred ccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChHHHH
Q 003517 330 GLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFA 409 (813)
Q Consensus 330 G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~~~ 409 (813)
|+++|+..+.+...|+.+++++++++++|+++++++++++|+|+||++.+|++||+||++++++++++.+.|+++++.|+
T Consensus 336 Gl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~f~ 415 (832)
T PLN03159 336 GLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFA 415 (832)
T ss_pred hheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchhhh
Confidence 99999988876445666677778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHhhcccccCCCCccccccCCCCCccceeEEEeecCCChhhHHHHHHhhccCCCCCceEEEEE
Q 003517 410 ILVLMALFTTFITTPILMAIYKPARKGVPYKHRTIQRKDTETEFRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMH 489 (813)
Q Consensus 410 ~lvl~~vv~t~i~~plv~~l~~~~~~~~~~~~~~i~~~~~~~elriLv~v~~~~~v~~li~Ll~~~~~~~~s~~~v~~Lh 489 (813)
+++++++++|.+++|++.++|+|+||+..|++|++|+.++++|+|||+|+|++++++++++|++++++++++|+++|++|
T Consensus 416 ~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lh 495 (832)
T PLN03159 416 VMVLVAVAMTALITPVVTVVYRPARRLVGYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLH 495 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHhhhccccccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHHHHHHHHhhhc-CceEEEeeEeeccCCChHHHHHHHHHhcCCcEEE
Q 003517 490 LMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQL-SSVTVRPMTAISALSSIHEDICASAHRKRAALIL 568 (813)
Q Consensus 490 Lvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~-~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlII 568 (813)
|+|+++|+++.+++|+.++++.+..++...++|+++++|++|++. ++++|+++|++|||++||+|||++|+|+++++||
T Consensus 496 LveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIi 575 (832)
T PLN03159 496 LVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLII 575 (832)
T ss_pred EEeecCCCccceeeeecccccccccccccccccHHHHHHHHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEE
Confidence 999999999999999876544332222235589999999999986 5899999999999999999999999999999999
Q ss_pred ecCCcccccCCcccccccchHHHHHHHhccCCCceEEEecCCCCCCCcccccccceeEEEecCCCcChHHHHHHHHHHhc
Q 003517 569 LPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIFVDRGLGGTTQVVASEVSYSVVVPFFGGLDDCEALAYGMRMAE 648 (813)
Q Consensus 569 lp~h~~~~~~g~~~~~~~~~r~~n~~vl~~apCsVgIlvdrg~~~~~~~~~~~~~~~i~v~f~GG~ddreAL~~a~rma~ 648 (813)
+||||+|+.||++++.++.+|.+|+|||++||||||||||||..+..+.......+||+++|+|||||||||+||+|||+
T Consensus 576 lpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~~~~~~~~~v~~~F~GG~DDREALa~a~rma~ 655 (832)
T PLN03159 576 IPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLASNQVSHHVAVLFFGGPDDREALAYAWRMSE 655 (832)
T ss_pred ECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCccccccccccceeEEEEecCCcchHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999976543334455678999999999999999999999999
Q ss_pred CCCeEEEEEEeecCCCCCcccC-----CCCCCcccccccCCCCccccHHHHHHHHHhhhccCCCCeEEEEEEecChHHHH
Q 003517 649 HPGIKLTVVKFVAPKGTSLTFG-----SDAPGVISIDLLRGDNDQVGDDAIISDFKSIASKNQESITLEERLVESSQEIA 723 (813)
Q Consensus 649 ~~~v~ltvvr~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~y~e~~v~~~~e~~ 723 (813)
||++++||+||++.++...+.. .+++ ......++++.|+++||++++|||.++ ..+++|.|+||+|+|+.||+
T Consensus 656 ~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~~D~~~~~ef~~~~-~~~~~v~y~E~~V~~~~e~~ 733 (832)
T PLN03159 656 HPGITLTVMRFIPGEDAAPTASQPASSPSDP-RIPTVETDGKKERQLDEEYINEFRARN-AGNESIVYTEKVVSNGEETV 733 (832)
T ss_pred CCCeEEEEEEEEccccccccccccccccccc-ccccccccchhHHHHHHHHHHHHHHhc-CCCCceEEEEEecCCHHHHH
Confidence 9999999999996533221000 0000 011111224568899999999999998 77889999999999999999
Q ss_pred HHHhccCC-CcEEEEccCC----C-CCCCCCCccccccCccccchhhhhcCCCCCcccEEEEeecc
Q 003517 724 GVLKSMNK-CNLFLVGRMA----P-TAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVLQQYN 783 (813)
Q Consensus 724 ~~i~~~~~-~DLviVGr~~----~-~~gl~~w~~~e~~~eLG~igd~las~d~~~~~SvLvvqq~~ 783 (813)
.++|++++ |||+||||+| + ++||+|| +| |||||+|||+|||+||.+++||||||||.
T Consensus 734 ~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w--~e-~pELG~iGD~LaS~d~~~~~SVLVvQQ~~ 796 (832)
T PLN03159 734 AAIRSMDSAHDLFIVGRGQGMISPLTAGLTDW--SE-CPELGAIGDLLASSDFAATVSVLVVQQYV 796 (832)
T ss_pred HHHHHhhccCcEEEEecCCCCCcchhcccccc--cc-CCccchhhhHHhcCCCCCceeEEEEEeec
Confidence 99999998 9999999987 2 8899999 99 99999999999999999999999999998
No 2
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-122 Score=1087.90 Aligned_cols=750 Identities=49% Similarity=0.806 Sum_probs=680.7
Q ss_pred CCccCCCCcccCCCCCCccHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCch
Q 003517 15 PMKATSNGSFQGENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSM 94 (813)
Q Consensus 15 ~~~~~~~g~~~g~~~~~~~l~~~l~~i~lil~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~ 94 (813)
+++..+.|.|+|+||++|++|++++|+++++++++++++++||+|||++++++++||++||+.+|+++.+.+.+||.++.
T Consensus 2 ~~~~~~~g~~~~~~~~~~~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~ 81 (769)
T KOG1650|consen 2 WVKATSNGVFPGVNPLKYALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSM 81 (769)
T ss_pred CCccccCCcccCCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchH
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCh---hHHHHHHHHH
Q 003517 95 TVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLK-GANQ---APLLVFMGVS 170 (813)
Q Consensus 95 ~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~-~~~~---~~~~l~lg~~ 170 (813)
..+++++.+|+.+++|+.|+|+|.+.++|++|++..+|+.++++|++.|.++...+...... .+.. ..+..++..+
T Consensus 82 ~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (769)
T KOG1650|consen 82 IVLELLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSA 161 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888777433311 1111 0145788899
Q ss_pred HhhccHHHHHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHHHHHHHH
Q 003517 171 LSITAFPVLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSS--SSLIAVWVLLSGAAFVVFAVFVIRPV 248 (813)
Q Consensus 171 ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~v~~~~ 248 (813)
+|.||||+++++|.|+|++++++||+++++++++|+.+|.++++..++.... ++....|.+...+++++++.++++|.
T Consensus 162 ~s~tsfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~p~ 241 (769)
T KOG1650|consen 162 QSITSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRSVWDLVLVIGFVLFLFFVVRPL 241 (769)
T ss_pred hhcchhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHheeeehhhh
Confidence 9999999999999999999999999999999999999999988887766552 35567888888899999999999999
Q ss_pred HHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHC-hhHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHH
Q 003517 249 LSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIG-IHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFA 327 (813)
Q Consensus 249 ~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g-~~~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~ 327 (813)
+.|+.||+|++++.++.|+..++..++.++.+++.++ +|+++|||+.|+++|+++|+++.+.+|+|++.+++|+|+||+
T Consensus 242 ~~wi~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~ 321 (769)
T KOG1650|consen 242 MKWIIKRTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFA 321 (769)
T ss_pred HHHHhhcCCCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 899999999999999999999999999999999999999999
Q ss_pred HhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChHH
Q 003517 328 ASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQA 407 (813)
Q Consensus 328 ~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~ 407 (813)
.+|+++|+..+.. |......+...+++|++++..++.++|+|+||++.+|++|++||.++++.++.+.+.++++++.
T Consensus 322 ~~G~k~di~~i~~---~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~ 398 (769)
T KOG1650|consen 322 ISGLKTDISRINK---WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEG 398 (769)
T ss_pred hhccceeHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccch
Confidence 9999999998875 7777777888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhcccccCCCCccccccCCCCCccceeEEEeecCCChhhHHHHHHhhccCCCCCceEEE
Q 003517 408 FAILVLMALFTTFITTPILMAIYKPARKGVPYKHRTIQRKDTETEFRILACFHSTRNIPSLINLVESSRGRKRGKLCLYA 487 (813)
Q Consensus 408 ~~~lvl~~vv~t~i~~plv~~l~~~~~~~~~~~~~~i~~~~~~~elriLv~v~~~~~v~~li~Ll~~~~~~~~s~~~v~~ 487 (813)
|++++++++++|.+++|+++.+|+|.+++..|++|++|+.++++++|++.|+|++++++++++++|++.+++++|+++|+
T Consensus 399 f~~~vl~alv~t~I~~~~l~~~y~p~~~~~~y~~~~i~~~~~~~~Lril~cl~~~~~is~~i~~le~~~~~~~~p~~v~~ 478 (769)
T KOG1650|consen 399 FTVMVLMALVSTFITPPLLMFLYDPTRKYHGYKKRGIQHLKPNSELRILTCLHGPENISGIINLLELSSGSLESPLSVYA 478 (769)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhcchhhhcCceEeehhhhcCCCCceEEEEEecCCCcchHHHHHHHHcCCCCCCCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988777999999
Q ss_pred EEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHHHHHHHHhhhc--CceEEEeeEeeccCCChHHHHHHHHHhcCCc
Q 003517 488 MHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQL--SSVTVRPMTAISALSSIHEDICASAHRKRAA 565 (813)
Q Consensus 488 LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~--~~v~v~~~~~vs~~~~m~~dI~~~A~e~~ad 565 (813)
+|++|+.+|+.+.+++|+.++++... .....++++..+|+.|++. ..+.++++|+++|+.+||+|||.+|.+++++
T Consensus 479 lhlveL~~~~~~~li~h~~~~~~~~~--~~s~~~~~i~~aF~~f~~~~~~~v~v~~~Ta~s~~~~m~edic~la~~~~~~ 556 (769)
T KOG1650|consen 479 LHLVELVGRATPLLISHKLRKNGRVE--SRSSSSDQINVAFEAFEKLSQEGVMVRTFTALSPEKLMHEDICTLALDKGVS 556 (769)
T ss_pred eeeeecccccchhhhhhhhccccccc--cccccchhhHHHHHHHHHhcCCcEEEEeehhhCChhhchhhhhHHHHhhCCc
Confidence 99999999999999999887764221 1124567999999999994 5799999999999999999999999999999
Q ss_pred EEEecCCcccccCCcccccccchHHHHHHHhccCCCceEEEecCCCCCCCcccccccceeEEEecCCCcChHHHHHHHHH
Q 003517 566 LILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIFVDRGLGGTTQVVASEVSYSVVVPFFGGLDDCEALAYGMR 645 (813)
Q Consensus 566 lIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~apCsVgIlvdrg~~~~~~~~~~~~~~~i~v~f~GG~ddreAL~~a~r 645 (813)
+|++||||+|+.++.++..+..+|.+|++|+++|||||||+||||.......+.....++|+++|+||+||||||+|+.|
T Consensus 557 liilpfhk~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg~~~~~~~~~~~~~~~v~~lF~GG~DDrEALa~~~r 636 (769)
T KOG1650|consen 557 LIILPFHKHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDRGLRRSGVTQKRGSSYKVVVLFLGGKDDREALALAKR 636 (769)
T ss_pred EEEeehhhhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEecCcccccceecccceeEEEEEecCChhhHHHHHHHHH
Confidence 99999999999666899999999999999999999999999999821111112233678999999999999999999999
Q ss_pred HhcCCCeEEEEEEeecCCCCCcccCCCCCCcccccccCCCCccccHHHHHHHH-HhhhccCCCCeEEE-EEEecChHHHH
Q 003517 646 MAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDF-KSIASKNQESITLE-ERLVESSQEIA 723 (813)
Q Consensus 646 ma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~-~~~~~~~~~~v~y~-e~~v~~~~e~~ 723 (813)
|++||++++||+||+++++..+... ..++++.+|++..+++ +..+ ..+.++.|. ||.++++.||.
T Consensus 637 m~~~~~v~lTVirf~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~~-~~~~~i~~~~ek~v~~~~et~ 703 (769)
T KOG1650|consen 637 MAENPRVTLTVIRFFPDESKYNRKV------------LVEVGKMLDQEGLEDFVKSTR-ESNLDIIYAEEKIVLNGAETT 703 (769)
T ss_pred HhhCCceEEEEEEeeccchhhcccc------------cchhhhhhhhhHHHHHHHHhh-hchhhhhhhhHHHHhcchhHH
Confidence 9999999999999997655332100 1467888899988888 6554 566678888 69999999999
Q ss_pred HHHhccCC-CcEEEEccCC----C-CCCCCCCccccccCccccchhhhhcCCCCCcccEEEEeeccCC
Q 003517 724 GVLKSMNK-CNLFLVGRMA----P-TAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVLQQYNPT 785 (813)
Q Consensus 724 ~~i~~~~~-~DLviVGr~~----~-~~gl~~w~~~e~~~eLG~igd~las~d~~~~~SvLvvqq~~~~ 785 (813)
.+++++++ |||++|||++ + ++|+++| +| |||||+|||.|+|+||.+++||||+|||...
T Consensus 704 ~~~~~~~~~ydL~ivGr~~~~~~~~t~gl~~W--~e-~pELg~IGd~las~~~~~~~svlvvqq~~~~ 768 (769)
T KOG1650|consen 704 ALLRSITEDYDLFIVGRSHGMLSEATGGLSEW--SE-CPELGVIGDLLASSDFSSKVSVLVVQQQLYS 768 (769)
T ss_pred HHHHHhccccceEEEecccccccchhcCchhc--cc-CccccccCccccccccCccceEEEEEeeecC
Confidence 99999999 9999999998 2 8999999 99 9999999999999999999999999999753
No 3
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=4.1e-48 Score=453.76 Aligned_cols=400 Identities=21% Similarity=0.335 Sum_probs=324.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhc
Q 003517 36 LIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLE 115 (813)
Q Consensus 36 ~~l~~i~lil~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle 115 (813)
.++.++.+++.++.++..++||+|+|+++|||++|+++||+++|+++ ..+.++.++++|++++||.+|+|
T Consensus 5 ~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~----------~~~~i~~laelGvv~LlF~iGLE 74 (621)
T PRK03562 5 HTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVT----------DVESILHFAEFGVVLMLFVIGLE 74 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCC----------CHHHHHHHHHHHHHHHHHHHHhC
Confidence 47899999999999999999999999999999999999999999754 23568899999999999999999
Q ss_pred cChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCChhHH
Q 003517 116 LDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGR 195 (813)
Q Consensus 116 ~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~ 195 (813)
+|++.+|+.+|+++.+|..++++|++++++++++++. ++ ..++++|.+++.||++++.++|+|+|+++|+.||
T Consensus 75 l~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~------~~-~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~ 147 (621)
T PRK03562 75 LDPQRLWKLRRSIFGGGALQMVACGGLLGLFCMLLGL------RW-QVALLIGLGLALSSTAIAMQAMNERNLMVTQMGR 147 (621)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CH-HHHHHHHHHHHHHHHHHHHHHHHHhccccCchHH
Confidence 9999999999999999999999999888777666532 22 4578899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-Cc-hhHHHH-HHHH----HHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHH
Q 003517 196 IAMSAAAVNDVAAWVLLALAIALSSS-SS-SLIAVW-VLLS----GAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYVC 268 (813)
Q Consensus 196 l~ls~a~i~D~~~~~ll~l~~~~~~~-~~-~~~~~~-~~~~----~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~ 268 (813)
.+++.++++|+++|++++++..+... .+ .....| ..+. .++++++..++.+|+++|+.|+. .+|.++.
T Consensus 148 ~~l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~-----~~e~~~~ 222 (621)
T PRK03562 148 SAFAILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARSG-----LREVFTA 222 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CchHHHH
Confidence 99999999999999999887655432 11 111222 1221 22222333455667777766543 4677888
Q ss_pred HHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHH
Q 003517 269 ITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLL 348 (813)
Q Consensus 269 ~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~ 348 (813)
.+++++++++++++.+|+|+++|||++|+++++ ++++++++++++++ .++|+|+||+++|+++|+..+.. .|+.++
T Consensus 223 ~~l~lv~~~a~la~~~Gls~~lGAFlAGl~l~~-~~~~~~le~~i~pf-~~lll~lFFi~vG~~id~~~l~~--~~~~il 298 (621)
T PRK03562 223 VALFLVFGFGLLMEEVGLSMALGAFLAGVLLAS-SEYRHALESDIEPF-KGLLLGLFFIAVGMSIDFGTLLE--NPLRIL 298 (621)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcC-CccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHHH--HHHHHH
Confidence 889999999999999999999999999999996 88999999999999 79999999999999999988765 344445
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHhHHHHHHH
Q 003517 349 LVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMA 428 (813)
Q Consensus 349 ~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~plv~~ 428 (813)
.++++.+++|++++++.++++|+++++++.+|++|+++|+++++++.++.+.++++++.++.+++++ +.|++.+|++..
T Consensus 299 ~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v-~lS~~~tP~l~~ 377 (621)
T PRK03562 299 ILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAV-ALSMAATPLLLV 377 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 5566678999999999999999999999999999999999999999999999999999999998754 557777777776
Q ss_pred hhcccc-cCCCCccccccCCCCCccceeEEEeecCCC
Q 003517 429 IYKPAR-KGVPYKHRTIQRKDTETEFRILACFHSTRN 464 (813)
Q Consensus 429 l~~~~~-~~~~~~~~~i~~~~~~~elriLv~v~~~~~ 464 (813)
+|++.. ++...+ +. ++..++.+-|+++|.++.-.
T Consensus 378 ~~~~~~~~~~~~~-~~-~~~~~~~~~~vII~G~Gr~G 412 (621)
T PRK03562 378 LLDRLEQSRTEEA-RE-ADEIDEQQPRVIIAGFGRFG 412 (621)
T ss_pred hhhHHHHHHhhhc-cc-ccccccccCcEEEEecChHH
Confidence 665532 111111 11 11111224688888877644
No 4
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=3.8e-47 Score=445.03 Aligned_cols=401 Identities=18% Similarity=0.328 Sum_probs=321.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhcc
Q 003517 37 IILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLEL 116 (813)
Q Consensus 37 ~l~~i~lil~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~ 116 (813)
++.++.+++.++.+...+++|+|+|+++||+++|+++||+++|+++. .+.+..++++|++++||.+|+|+
T Consensus 6 ~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~----------~~~i~~laelGvv~LLF~iGLel 75 (601)
T PRK03659 6 LLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISD----------VDEILHFSELGVVFLMFIIGLEL 75 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCc----------HHHHHHHHHHHHHHHHHHHHhcC
Confidence 56788999999999999999999999999999999999999997642 35578999999999999999999
Q ss_pred ChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCChhHHH
Q 003517 117 DIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRI 196 (813)
Q Consensus 117 d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l 196 (813)
|++.+|+.+|+++.+|..++++|+++++.+.++++ +++ ..++++|++++.||++++.++|+|+|+.+++.||+
T Consensus 76 ~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~~g------~~~-~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~ 148 (601)
T PRK03659 76 NPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLMLTD------FSW-QAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQL 148 (601)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------cCH-HHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHH
Confidence 99999999999999999999999887766554442 222 45788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCch---h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHH
Q 003517 197 AMSAAAVNDVAAWVLLALAIALSSSSSS---L-IAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYVCITLS 272 (813)
Q Consensus 197 ~ls~a~i~D~~~~~ll~l~~~~~~~~~~---~-~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~ 272 (813)
+++..+++|+.++++++++..+...... . ...+.++..++++++..++.+|+++|+.+. +.+|.++..+++
T Consensus 149 ~l~vll~~Di~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~l~ 223 (601)
T PRK03659 149 GFSVLLFQDLAVIPALALVPLLAGSADEHFDWMKIGMKVLAFAGMLIGGRYLLRPLFRFIAAS-----GVREVFTAAALL 223 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCchHHHHHHHH
Confidence 9999999999999999877655443211 1 111112222222233345566666666543 246788888899
Q ss_pred HHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHHHHHH
Q 003517 273 MVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVIL 352 (813)
Q Consensus 273 ~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii~ 352 (813)
++++++++++.+|+|+++|||++|+++++ +++++++.++++++ .++|+|+||+++|+++|+..+.+ .|+.++.+++
T Consensus 224 ~vl~~a~l~~~~Gls~~LGAFlaGl~l~~-s~~~~~l~~~i~pf-~~lll~lFFi~vGm~id~~~l~~--~~~~il~~~~ 299 (601)
T PRK03659 224 LVLGSALFMDALGLSMALGTFIAGVLLAE-SEYRHELEIAIEPF-KGLLLGLFFISVGMALNLGVLYT--HLLWVLISVV 299 (601)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHhcC-CchHHHHHHHHHHH-HHHHHHHHHHHHhhhccHHHHHH--hHHHHHHHHH
Confidence 99999999999999999999999999997 78999999999999 79999999999999999988865 4555556667
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHhHHHHHHHhhcc
Q 003517 353 NACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAIYKP 432 (813)
Q Consensus 353 ~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~plv~~l~~~ 432 (813)
+.+++|++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.+++++ +.|++.+|++..+++|
T Consensus 300 ~~l~~K~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v-~ls~~~tP~l~~~~~~ 378 (601)
T PRK03659 300 VLVAVKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVV-TLSMMTTPLLMKLIDK 378 (601)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHhHH
Confidence 778999999999999999999999999999999999999999999999999999999995555 4556778888777665
Q ss_pred --cccCCCCccccccCCCCCccceeEEEeecCCC
Q 003517 433 --ARKGVPYKHRTIQRKDTETEFRILACFHSTRN 464 (813)
Q Consensus 433 --~~~~~~~~~~~i~~~~~~~elriLv~v~~~~~ 464 (813)
.+++.........+...+.+-++++|.+++-.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~vII~G~Gr~G 412 (601)
T PRK03659 379 WLARRLNGPEEEDEKPWVEDDKPQVIIVGFGRFG 412 (601)
T ss_pred HHHHhhccccccccccccccccCCEEEecCchHH
Confidence 23321110100001111234688888776643
No 5
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=6.7e-47 Score=442.28 Aligned_cols=414 Identities=19% Similarity=0.262 Sum_probs=332.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhcc
Q 003517 37 IILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLEL 116 (813)
Q Consensus 37 ~l~~i~lil~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~ 116 (813)
++..+.++++++.+++.++||+|+|++++||++|+++||+++|... ..+.++.++++|++++||.+|+|+
T Consensus 7 ~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~----------~~~~~~~la~lGli~llF~~Gle~ 76 (558)
T PRK10669 7 LITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVA----------DTKLAPELAELGVILLMFGVGLHF 76 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCcccccccc----------chHHHHHHHHHHHHHHHHHhHhcC
Confidence 3456788899999999999999999999999999999999999743 235688999999999999999999
Q ss_pred ChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCChhHHH
Q 003517 117 DIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRI 196 (813)
Q Consensus 117 d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l 196 (813)
|++.+|+.++..+..+..++++|+++++++++.++ ++. ..++++|+++|.||++++.++|+|+|+++++.||+
T Consensus 77 d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~ 149 (558)
T PRK10669 77 SLKDLMAVKSIAIPGAIAQIAVATLLGMALSAVLG------WSL-MTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQI 149 (558)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhC------CCH-HHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHH
Confidence 99999999888877788888888888877666553 333 46788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC---C--chh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHH
Q 003517 197 AMSAAAVNDVAAWVLLALAIALSSS---S--SSL----IAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYV 267 (813)
Q Consensus 197 ~ls~a~i~D~~~~~ll~l~~~~~~~---~--~~~----~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~ 267 (813)
++++++++|+.+|+++.+...+... + +.. ...+.++..++++++..++.|++..|+.++.++.+ .+|.++
T Consensus 150 ~l~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~e~~~ 228 (558)
T PRK10669 150 AIGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATG-SRELFT 228 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHHH
Confidence 9999999999999998876554321 1 111 12344455666777778888999999998886544 577888
Q ss_pred HHHHHHHHHHHHH-HHHHChhHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHH
Q 003517 268 CITLSMVLAASFV-TDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGL 346 (813)
Q Consensus 268 ~~~l~~~l~~~~~-ae~~g~~~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~ 346 (813)
+.++++++++++. ++.+|+|+++|||++|+++|+ +++++++.++..++ .++|+|+||+++|+++|+..+.+ .+..
T Consensus 229 l~~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~-~~~~~~~~~~~~~~-~~~f~plFFv~~G~~~d~~~l~~--~~~~ 304 (558)
T PRK10669 229 LSVLALALGIAFGAVELFDVSFALGAFFAGMVLNE-SELSHRAAHDTLPL-RDAFAVLFFVSVGMLFDPMILIQ--QPLA 304 (558)
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhC-ChhHHHHHHHHhhH-HHHHHHHHHHHhhhhcCHHHHHH--HHHH
Confidence 8788888888764 699999999999999999996 77888888888887 78999999999999999988765 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHhHHHHH
Q 003517 347 LLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPIL 426 (813)
Q Consensus 347 ~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~plv 426 (813)
...++++.+++|++++++.++++|+++|+++.+|++|++||+++++++..+.+.|+++++.|++++++++++++++|.+.
T Consensus 305 ~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~ 384 (558)
T PRK10669 305 VLATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLF 384 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677899999999999999999999999999999999999999999999999999999999888888777777777
Q ss_pred HHhhcccccCCCCccc----cccC---CCCCccceeEEEeecCCChhhHHHHHHhhc
Q 003517 427 MAIYKPARKGVPYKHR----TIQR---KDTETEFRILACFHSTRNIPSLINLVESSR 476 (813)
Q Consensus 427 ~~l~~~~~~~~~~~~~----~i~~---~~~~~elriLv~v~~~~~v~~li~Ll~~~~ 476 (813)
++..+..++..+.+.+ ..++ .+++-+-|+++|.+++-. -++++.+.
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hiiI~G~G~~G----~~la~~L~ 437 (558)
T PRK10669 385 TLLERYLAKTETLEEQTLEEAIEEEKQIPVDICNHALLVGYGRVG----SLLGEKLL 437 (558)
T ss_pred HHhhHHHHHhhhccccccccccccccccccccCCCEEEECCChHH----HHHHHHHH
Confidence 6655443322111111 0111 112234688888777644 23455554
No 6
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-44 Score=400.39 Aligned_cols=379 Identities=29% Similarity=0.527 Sum_probs=316.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhc
Q 003517 36 LIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLE 115 (813)
Q Consensus 36 ~~l~~i~lil~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle 115 (813)
..+.|+.++++++.+.++++||+|+|+++||+++|+++||.+++.. .+..+.++.++++|++++||.+|+|
T Consensus 6 ~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~---------~~~~~~i~~laelGvi~LlF~~GLE 76 (397)
T COG0475 6 LILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLI---------IESSEIIELLAELGVVFLLFLIGLE 76 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCccccccc---------CCchHHHHHHHHHhHHHHHHHHHHC
Confidence 4678999999999999999999999999999999999999554432 3456889999999999999999999
Q ss_pred cChhHHHhcchh-hHHHHHHHHHHHHHHHHHHHHH-HHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCChh
Q 003517 116 LDIKSILRTGKK-SLGIALAGITLPFALGIGTSFV-LRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDL 193 (813)
Q Consensus 116 ~d~~~l~~~~~~-~~~ia~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~ 193 (813)
+|++.+||++|+ ....+..++..|+.++....+. ++. ++ ..++++|.+++.||.++++++++|+|+.+++.
T Consensus 77 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~----~~---~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~ 149 (397)
T COG0475 77 FDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGL----SL---IAALFLGAALALSSTAIVLKILMELGLLKTRE 149 (397)
T ss_pred cCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhcc----Ch---HHHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 999999999999 8888888888888877654443 221 22 45799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHH
Q 003517 194 GRIAMSAAAVNDVAAWVLLALAIALSSSSSSL--IAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYVCITL 271 (813)
Q Consensus 194 g~l~ls~a~i~D~~~~~ll~l~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l 271 (813)
|++++++++++|+.++++++++..+..+++.. ......+...++.++..+..+++.+|+.|+..+. +.+|..+..++
T Consensus 150 g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~-~~~e~~~~~~l 228 (397)
T COG0475 150 GQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKT-ESSELFILFVL 228 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHH
Confidence 99999999999999999999988876552221 1233344444555555454566666666665322 34688899999
Q ss_pred HHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCch-HHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHHHH
Q 003517 272 SMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFA-GVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLV 350 (813)
Q Consensus 272 ~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~~-~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~i 350 (813)
++++++++++|.+|+|+++|||++|+++++ .+.+ ++++++++++.+++|+|+||+.+|+++|+..+.+ .+..+.++
T Consensus 229 ~i~l~~a~l~e~~gls~ilGAFlaGl~ls~-~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~--~~~~~l~~ 305 (397)
T COG0475 229 LLVLGAAYLAELLGLSMILGAFLAGLLLSE-SEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLE--NLLLILLL 305 (397)
T ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHHhcc-cccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhc--cHHHHHHH
Confidence 999999999999999999999999999997 5666 7999999999877999999999999999999987 34446677
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHhHHHHHHHhh
Q 003517 351 ILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAIY 430 (813)
Q Consensus 351 i~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~plv~~l~ 430 (813)
+.+..++|.+++++.++.+|.+.|++...|+.+.++|+++++.++.+.. +.++++.+...+.+++++|.+.+++.+.++
T Consensus 306 ~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~~~~~ 384 (397)
T COG0475 306 VALAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLTPILL 384 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778899999999999999999999999999999999999999988876 578888888888887777777777777666
Q ss_pred ccccc
Q 003517 431 KPARK 435 (813)
Q Consensus 431 ~~~~~ 435 (813)
++..+
T Consensus 385 ~~~~~ 389 (397)
T COG0475 385 KRLLK 389 (397)
T ss_pred HHhhc
Confidence 55433
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=4.5e-39 Score=376.10 Aligned_cols=382 Identities=17% Similarity=0.176 Sum_probs=313.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhh
Q 003517 35 PLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGL 114 (813)
Q Consensus 35 ~~~l~~i~lil~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gl 114 (813)
..++++++++++++.+++.+++|+++|.+++++++|+++||+++|.+.. .+.+..+.++++|++++||..|+
T Consensus 5 ~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~--------~~~~~~~~i~~l~L~~iLF~~Gl 76 (562)
T PRK05326 5 NSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQF--------DNYPLAYLVGNLALAVILFDGGL 76 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCccc--------CcHHHHHHHHHHHHHHHHHcCcc
Confidence 3578889999999999999999999999999999999999999986431 23467899999999999999999
Q ss_pred ccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCc-cCChh
Q 003517 115 ELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKL-LTTDL 193 (813)
Q Consensus 115 e~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l-~~s~~ 193 (813)
|+|++.+|+++++++.+++.++++|+++....++++. ++++ ..++++|+++++||++++.++++|+|+ +++++
T Consensus 77 ~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~-----g~~~-~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v 150 (562)
T PRK05326 77 RTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLL-----GLDW-LEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERV 150 (562)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCH-HHHHHHhhhhccCchHHHHHHHhccCCCcchhH
Confidence 9999999999999999999999999887554443332 2233 567999999999999999999999995 79999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-C--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHH
Q 003517 194 GRIAMSAAAVNDVAAWVLLALAIALSSS-S--SSLIAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYVCIT 270 (813)
Q Consensus 194 g~l~ls~a~i~D~~~~~ll~l~~~~~~~-~--~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~ 270 (813)
++++.+++.+||.++++++.+...+... . .....++.++..+++.++.++++++++.|+.+|... ..++.+..++
T Consensus 151 ~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~--~~~~~~~i~~ 228 (562)
T PRK05326 151 ASTLEIESGSNDPMAVFLTITLIELITGGETGLSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIAL--PAEGLYPILV 228 (562)
T ss_pred HhHhhhhhhcccHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--chhhHHHHHH
Confidence 9999999999999999988777665433 2 112223445555666777778889999999988732 1245677888
Q ss_pred HHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHHHH
Q 003517 271 LSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLV 350 (813)
Q Consensus 271 l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~i 350 (813)
++++++++++++.+|.|+++|+|++|+++++.++..+...+++.+...+++.|+||+++|+.+|+..+.+ ..+...++.
T Consensus 229 l~~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~-~~~~~l~i~ 307 (562)
T PRK05326 229 LAGALLIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLD-IALPALLLA 307 (562)
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHH
Confidence 9999999999999999999999999999998655555556666666688999999999999999988764 223323333
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCh-HHHHHHHHHHHHHHHhHHHHHHHh
Q 003517 351 ILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLND-QAFAILVLMALFTTFITTPILMAI 429 (813)
Q Consensus 351 i~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~-~~~~~lvl~~vv~t~i~~plv~~l 429 (813)
+++.+++|++++++.++.+++++||+..+||. ++||.++++++..+...++.+. ..|.++.+++++++++.++.++.+
T Consensus 308 ~~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~~-g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~ 386 (562)
T PRK05326 308 LFLILVARPLAVFLSLLPFRFNLREKLFISWV-GLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWA 386 (562)
T ss_pred HHHHHHHHHHHHHHHHccCCCCHhhhheeeee-cchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHH
Confidence 45667899999999999999999999999995 8999999999999998888864 567887788888888888888776
Q ss_pred hcccc
Q 003517 430 YKPAR 434 (813)
Q Consensus 430 ~~~~~ 434 (813)
.++.+
T Consensus 387 a~~l~ 391 (562)
T PRK05326 387 ARKLG 391 (562)
T ss_pred HHHcC
Confidence 65533
No 8
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=8.9e-35 Score=310.60 Aligned_cols=269 Identities=26% Similarity=0.489 Sum_probs=228.3
Q ss_pred HHHHHHHHHhcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHHhcc
Q 003517 46 AFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTG 125 (813)
Q Consensus 46 ~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~ 125 (813)
+++.+.+.++||+|+|++++++++|+++||+.+|.+++ .+.++.++++|++++||.+|+|+|++.+||++
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~----------~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~ 71 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISN----------VEGVNHLAEFGVILLMFLIGLELDLERLWKLR 71 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCC----------hHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 46778899999999999999999999999999986542 35789999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHH-HHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCChhHHHHHHHHHHH
Q 003517 126 KKSLGIALAGITLP-FALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRIAMSAAAVN 204 (813)
Q Consensus 126 ~~~~~ia~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~ 204 (813)
|++..++..++++| +++++.+.++++ ++. ..++++|++++.||++++.++++|+|+.+++.|+++++++++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~ 144 (273)
T TIGR00932 72 KAAFGVGVLQVLVPGVLLGLLLGHLLG------LAL-GAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQ 144 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC------CCH-HHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHH
Confidence 99999999999999 666665555543 222 4689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 003517 205 DVAAWVLLALAIALSSSS--SSLIAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYVCITLSMVLAASFVTD 282 (813)
Q Consensus 205 D~~~~~ll~l~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae 282 (813)
|+++++++.+......+. +.....+.+...+++.++.+++.++...|+.|+.+++++ .|.+...++.+++.+++++|
T Consensus 145 D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~la~ 223 (273)
T TIGR00932 145 DIAVVPLLALLPLLATSASTEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRP-SELFTAGSLLLMFGSAYFAD 223 (273)
T ss_pred HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHH
Confidence 999999998877665431 222233344444555556667788888899888765433 47778888999999999999
Q ss_pred HHChhHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHhccccc
Q 003517 283 TIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTN 334 (813)
Q Consensus 283 ~~g~~~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~d 334 (813)
.+|.|+++|||++|+++++ .+.++++.++++++. ++|+|+||+++|+++|
T Consensus 224 ~~g~s~~lgaf~aGl~~~~-~~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 224 LLGLSMALGAFLAGVVLSE-SEYRHKLESDLEPIG-GVLLPLFFISVGMSVD 273 (273)
T ss_pred HhCCcHHHHHHHHHHHHcC-CchHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence 9999999999999999998 566888999999997 9999999999999987
No 9
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=2.2e-39 Score=363.15 Aligned_cols=371 Identities=31% Similarity=0.534 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHhcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHH
Q 003517 43 LVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSIL 122 (813)
Q Consensus 43 lil~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~ 122 (813)
++++.+.+.+.++||+++|.+++|+++|+++||.+++..++ + ...++.++++|+.++||.+|+|+|.+.+|
T Consensus 3 lli~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~-------~--~~~~~~l~~i~l~~llF~~G~~~d~~~l~ 73 (380)
T PF00999_consen 3 LLILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEP-------D--NPSFELLAEIGLAFLLFEAGLELDIKELR 73 (380)
T ss_dssp ------------------------------------------------------S-SSHHHHS--SSHHHHTTGGGG---
T ss_pred EEeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccc-------h--hhHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 34455666777899999999999999999999998884332 1 36678899999999999999999999999
Q ss_pred hcchhhHHHHHHHHHHHHHH-HHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCChhHHHHHHHH
Q 003517 123 RTGKKSLGIALAGITLPFAL-GIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRIAMSAA 201 (813)
Q Consensus 123 ~~~~~~~~ia~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a 201 (813)
|++|+++.+++.++++|+++ ++.+.+++. . .+++. ..++++|.+++.||++++.++++|.+..+++.++++++++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~-~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~ 149 (380)
T PF00999_consen 74 RNWRRALALGLVGFLLPFILVGFLLSFFLF-I--LGLSW-AEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSES 149 (380)
T ss_dssp --------------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTT
T ss_pred cccccccccccceeeehhhHHHHHHHHhhc-c--chhhh-HHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhc
Confidence 99999999999999999988 666554321 1 13333 4679999999999999999999888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHH
Q 003517 202 AVNDVAAWVLLALAIALSSSS---SSLIAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYVCITLSMVLAAS 278 (813)
Q Consensus 202 ~i~D~~~~~ll~l~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~ 278 (813)
++||+++++++.+.......+ +.......++..+...++.+++.+++.+|+.|+. ++.++.+..+++++++.++
T Consensus 150 ~i~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~ 226 (380)
T PF00999_consen 150 VINDIIAIILLSILISLAQASGQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRA---SPSSEIFILLVLALILLLY 226 (380)
T ss_dssp TTTTTTTTTTT---------------------------------------------------------------------
T ss_pred hhhccchhhhhhhhhhhhcccccccccchhcchhhhhhhheeeecccchHHHHhhhhc---cccchhhHHHHHHHHhhhc
Confidence 999999999988777655211 1111111222223333333344444444444442 2356777888999999999
Q ss_pred HHHHHHChhHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhh-chhhHHHHHHHHHHHHHH
Q 003517 279 FVTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIR-GATSWGLLLLVILNACFG 357 (813)
Q Consensus 279 ~~ae~~g~~~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~-~~~~~~~~~~ii~~~~~~ 357 (813)
+++|.+|.|+++|+|++|+++++ .+.++++.++++++.++++.|+||+++|+++|++.+. +...|.....+++..+++
T Consensus 227 ~~a~~~g~s~~l~af~~Gl~~~~-~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 305 (380)
T PF00999_consen 227 GLAEILGLSGILGAFIAGLILSN-SPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLG 305 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccceeeeeehcccc-ccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHh
Confidence 99999999999999999999995 7788889999999977999999999999999998874 223565566666677799
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHhHHHHHHHhh
Q 003517 358 KIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAIY 430 (813)
Q Consensus 358 K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~plv~~l~ 430 (813)
|++++++.+++.|.++||++.+|+.+++||+++++++..+.+.+.++++.+++++.++++++.+.++.++.+.
T Consensus 306 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l~ 378 (380)
T PF00999_consen 306 KFIGVYLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPLL 378 (380)
T ss_dssp -----------------HHHHTTTTSS--HHHHHHHHHHHHH-------------------------------
T ss_pred hhceeehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999998888888888877776554
No 10
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.4e-34 Score=285.46 Aligned_cols=380 Identities=26% Similarity=0.387 Sum_probs=308.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHH
Q 003517 32 YALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFL 111 (813)
Q Consensus 32 ~~l~~~l~~i~lil~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~ 111 (813)
++.|+ +..+..-+.++.+++.+..|+|+|+.+||+++|++.||.--|... .......++++|++++||-
T Consensus 3 h~tpl-i~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFva----------d~~La~~LAelGViLLmFg 71 (408)
T COG4651 3 HDTPL-ITTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVA----------DQTLAPELAELGVILLMFG 71 (408)
T ss_pred CCchH-HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCccc----------chhHHHHHHHhhHHHHHHh
Confidence 34443 444666678889999999999999999999999999998777542 2344558999999999999
Q ss_pred HhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCC
Q 003517 112 VGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTT 191 (813)
Q Consensus 112 ~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s 191 (813)
+|++++++++......++--++.++.+....+.++++.++ |+.. ..+.+|.++|..|..+..|.|+|++++++
T Consensus 72 vGLhfslkdLLavk~iAipgAl~qia~at~lg~gL~~~lg------ws~~-~glvfGlaLS~aSTVvllraLqEr~lidt 144 (408)
T COG4651 72 VGLHFSLKDLLAVKAIAIPGALAQIALATLLGMGLSSLLG------WSFG-TGIVFGLALSVASTVVLLRALEERQLIDT 144 (408)
T ss_pred cchheeHHHHhhHHHHhcchHHHHHHHHHHHHhHHHHHcC------CCcc-cceeeeehhhhHHHHHHHHHHHHhccccc
Confidence 9999999999877665555566666666666666666654 4432 35788999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcC---Cc-----hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Q 003517 192 DLGRIAMSAAAVNDVAAWVLLALAIALSSS---SS-----SLI-AVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPV 262 (813)
Q Consensus 192 ~~g~l~ls~a~i~D~~~~~ll~l~~~~~~~---~~-----~~~-~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~ 262 (813)
+-||++++.-+++|+..++.+.+..++.+- .+ ... ..+...+...|..++.++.|.+..|+..+.... ..
T Consensus 145 ~rG~iAiGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~t-Gs 223 (408)
T COG4651 145 QRGRIAIGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAAT-GS 223 (408)
T ss_pred cCceEEEeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-Cc
Confidence 999999999999999999888877765432 11 111 233455778899999999999999998887432 24
Q ss_pred hhHHHHHHHHHHHHHHH-HHHHHChhHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhch
Q 003517 263 KELYVCITLSMVLAASF-VTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGA 341 (813)
Q Consensus 263 ~e~~~~~~l~~~l~~~~-~ae~~g~~~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~ 341 (813)
+|.+.+.+++++++.++ .++.+|+|+.+|||++|+++++ ++..++..+..-++ .+.|.-+||+++||..|+..+.+.
T Consensus 224 rElf~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~e-selshraa~~slpL-rdaFaVlFFvsVGmlf~P~~l~~~ 301 (408)
T COG4651 224 RELFTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVLAE-SELSHRAAEDSLPL-RDAFAVLFFVSVGMLFDPMILIQQ 301 (408)
T ss_pred HHHHHHHHHHHHHHHhhccceeeccchhHHHHHHHHHhcc-hhhhHHHHHhccCH-HHHHHHHHHHHhhhhcCcHHhhcc
Confidence 78899999999999888 5678999999999999999995 88999999988888 789999999999999999877652
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHh
Q 003517 342 TSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFI 421 (813)
Q Consensus 342 ~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i 421 (813)
.+. +...+.+.+.+|-+..+...+.+|.|.|.++.++..+.+.|+++++++..+.+.++++ +...-++++.-+.+++
T Consensus 302 -pl~-vlatllii~~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp-~~gr~LvlagailsIl 378 (408)
T COG4651 302 -PLA-VLATLLIILFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLP-EAGRDLVLAGAILSIL 378 (408)
T ss_pred -hHH-HHHHHHHHHhhhHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCc-HHHHHHHHHHHHHHHH
Confidence 333 3445556678999999999999999999999999999999999999999999999998 4455555777777888
Q ss_pred HHHHHHHhhccccc
Q 003517 422 TTPILMAIYKPARK 435 (813)
Q Consensus 422 ~~plv~~l~~~~~~ 435 (813)
..|+.....++.++
T Consensus 379 ~nPllf~~~dr~~~ 392 (408)
T COG4651 379 LNPLLFALLDRYQR 392 (408)
T ss_pred HhHHHHHHHHHHhh
Confidence 88988766665443
No 11
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.96 E-value=6.4e-27 Score=270.28 Aligned_cols=366 Identities=16% Similarity=0.206 Sum_probs=259.4
Q ss_pred ccCCCCCCccHHHHHHHHHHHHHHHHHHHHH-hcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHH
Q 003517 24 FQGENPLDYALPLIILQICLVVAFTRFLAFL-LKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLAN 102 (813)
Q Consensus 24 ~~g~~~~~~~l~~~l~~i~lil~~~~~~~~l-~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~ 102 (813)
|+.-++-+..+. +.-++..+++..++..+ .+|+.+|..+.++++|+++||.++|+.++.. +.......++ +++
T Consensus 3 w~~l~~~~~~l~--~~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~---~g~~d~i~le-Ite 76 (810)
T TIGR00844 3 WEQLEVTKAHVA--YSCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLS---WGNTDSITLE-ISR 76 (810)
T ss_pred cccccccchhhH--HHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhh---cccchHHHHH-HHH
Confidence 443344443333 33344444444444444 4599999999999999999999988654310 0001233445 999
Q ss_pred HHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHH
Q 003517 103 IGLLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARI 182 (813)
Q Consensus 103 lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~i 182 (813)
+++++.+|.+|++++.+.+++.|+.++.+++.++.++++++.++++++.. +.++ ..++++|+++++|+|+....+
T Consensus 77 IvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~----GL~~-~~ALLLGAILAPTDPVLAssV 151 (810)
T TIGR00844 77 ILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVP----GLNF-PASLLMGACITATDPVLAQSV 151 (810)
T ss_pred HHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCH-HHHHHHHhhhcCCcHHHHHHH
Confidence 99999999999999999999999999999999999999888877776632 2333 578999999999999877777
Q ss_pred HH---HcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc--C-Cchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003517 183 LA---ELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSS--S-SSSL---IAVWVLLSGAAFVVFAVFVIRPVLSLMA 253 (813)
Q Consensus 183 L~---el~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~~--~-~~~~---~~~~~~~~~i~~~~~~~~v~~~~~~~i~ 253 (813)
++ ..+ ++.++..++.+++.+||.++++++.+...+.. + +... ..++.++..+++.++++++++++..|+.
T Consensus 152 ~kg~~~~r-vP~rLR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll 230 (810)
T TIGR00844 152 VSGTFAQK-VPGHLRNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAI 230 (810)
T ss_pred Hhcccccc-CChHHHhHHhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 334 68899999999999999999988766654432 1 1111 1122333334444444455555555544
Q ss_pred hhCCCC-CCchhHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCchHH-HHHHHHHHHHHhhHHHHHHHhcc
Q 003517 254 RRSPEG-EPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGV-LIEKIEDMVSGLFLPLYFAASGL 331 (813)
Q Consensus 254 ~~~~~~-~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~~~~-l~~kl~~~~~~~~~plFF~~~G~ 331 (813)
++..+. ....+.++.+.++++++++.+++.+|.++++++|++|+++.+...+.+. -...+......++..++|+++|+
T Consensus 231 ~~l~rr~~i~~esfla~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa 310 (810)
T TIGR00844 231 RFAEGKNIIDRESFLAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGS 310 (810)
T ss_pred HHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 433211 1124556777888888899999999999999999999999975433322 22336666677889999999999
Q ss_pred ccchhhhhc----hhhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHhhhhHHHHHHHHhhcccCC
Q 003517 332 KTNVATIRG----ATSWGLLLLVILNACFGKIVGTVVVAWSC--KVPLRESLALGFIMNTKGLVELIVLNIGKDRKV 402 (813)
Q Consensus 332 ~~dl~~l~~----~~~~~~~~~ii~~~~~~K~~~~~l~~~~~--~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~ 402 (813)
.+....+.. ...|..+++.+++.++.|+.++++...+. ..++||++++|| .++||+.++.++.++.+.+.
T Consensus 311 ~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 311 ILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred hhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence 998876643 12455556666677788988887764443 468999999999 79999999999988876544
No 12
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.96 E-value=7.5e-27 Score=269.53 Aligned_cols=366 Identities=15% Similarity=0.137 Sum_probs=253.0
Q ss_pred HHHHHHHHHHHHHhcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHH
Q 003517 42 CLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSI 121 (813)
Q Consensus 42 ~lil~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l 121 (813)
..+++++.....+++|+++|.+++++++|+++||..++... +.+ -+.+..+++.+++|..|+++|++.+
T Consensus 4 ~~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~-------~~~----~~~~~~~~Lp~lLF~~g~~~~~~~l 72 (525)
T TIGR00831 4 IELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEV-------PLD----REIVLFLFLPPLLFEAAMNTDLREL 72 (525)
T ss_pred HHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCC-------CCC----HHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 34455566677889999999999999999999986543211 111 1234568999999999999999999
Q ss_pred HhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCChhHHHHHHHH
Q 003517 122 LRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRIAMSAA 201 (813)
Q Consensus 122 ~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a 201 (813)
|++++.+..+++.++++|++++....+++. +.++ ..++++|+++|+|+++++.+++++.+ .++++.+++.+++
T Consensus 73 ~~~~~~i~~la~~~vlit~~~v~~~~~~~~-----~l~~-~~alllGails~TDpvav~~il~~~~-~p~rl~~il~gES 145 (525)
T TIGR00831 73 RENFRPIALIAFLLVVVTTVVVGFSLNWIL-----GIPL-ALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEGES 145 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cccH-HHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhh
Confidence 999999999999999999888766555431 2333 57899999999999999999999988 6899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcC-C--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHH
Q 003517 202 AVNDVAAWVLLALAIALSSS-S--SSLIAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYVCITLSMVLAAS 278 (813)
Q Consensus 202 ~i~D~~~~~ll~l~~~~~~~-~--~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~ 278 (813)
++||..+++++.+...+..+ + +.....+.++..++..++++++++.+..|+.|+..+ . +.....++++++++++
T Consensus 146 llND~~alvlf~~~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~-~--~~~~~~l~l~~~~~~y 222 (525)
T TIGR00831 146 LLNDGAALVVFAIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKID-D--PLVEIALTILAPFAGF 222 (525)
T ss_pred hhcchHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c--cHHHHHHHHHHHHHHH
Confidence 99999999999887766542 2 222233334444444555666667777777655432 1 3345677889999999
Q ss_pred HHHHHHChhHHHHHHHHhhhcCCCCCc------hHHHHHHHHHHHHHhhHHHHHHHhccccchhhh--hchh--h-----
Q 003517 279 FVTDTIGIHALFGAFVVGIIMPKEGPF------AGVLIEKIEDMVSGLFLPLYFAASGLKTNVATI--RGAT--S----- 343 (813)
Q Consensus 279 ~~ae~~g~~~~lgaf~aGL~l~~~~~~------~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l--~~~~--~----- 343 (813)
+++|.+|.|+++++|++|+++++..+. .+...+.++.....++.+++|+++|++++.... .... .
T Consensus 223 ~lAe~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~ 302 (525)
T TIGR00831 223 LLAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVI 302 (525)
T ss_pred HHHHHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 999999999999999999999875433 122334566666789999999999999874211 1100 0
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHH--Hh-----cCCChHHHHHHHHHHhhhhHHHHHHHHhhcc---cC--CCChHH-
Q 003517 344 WGL---LLLVILNACFGKIVGTVVVA--WS-----CKVPLRESLALGFIMNTKGLVELIVLNIGKD---RK--VLNDQA- 407 (813)
Q Consensus 344 ~~~---~~~ii~~~~~~K~~~~~l~~--~~-----~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~---~~--~i~~~~- 407 (813)
+.. .+++.......|++.++... ++ .+++||+.+.++| .+.||.++++++..... .+ ....+.
T Consensus 303 ~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al~~p~~~~~g~~~p~r~~i 381 (525)
T TIGR00831 303 LALFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALALSFPNQLLSGMAFPARYEL 381 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHHHccccccCCCCCchHHHH
Confidence 100 11111222345554333221 11 3578999999999 59999999987753321 11 222232
Q ss_pred ----HHHHHHHHHHHHHhHHHHHHHh
Q 003517 408 ----FAILVLMALFTTFITTPILMAI 429 (813)
Q Consensus 408 ----~~~lvl~~vv~t~i~~plv~~l 429 (813)
+.+++++.++.....+|+++++
T Consensus 382 ~~~~~~vVl~TllvqG~tlp~l~r~l 407 (525)
T TIGR00831 382 VFLAAGVILFSLLVQGISLPIFVKRK 407 (525)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhc
Confidence 3334444555555555665544
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.94 E-value=4.2e-24 Score=240.02 Aligned_cols=379 Identities=18% Similarity=0.219 Sum_probs=281.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhc
Q 003517 36 LIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLE 115 (813)
Q Consensus 36 ~~l~~i~lil~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle 115 (813)
..++++.+++.++.+...+.+|+..|.+..+++.|++.||.+++...+- ....-+.+..+++..++|..|+|
T Consensus 6 ~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~--------~~~~~el~~~l~l~ilLf~~g~~ 77 (429)
T COG0025 6 MLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPD--------LELDPELFLVLFLAILLFAGGLE 77 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhcccccc--------ccCChHHHHHHHHHHHHHHhHhc
Confidence 4567888888999999999999999999999999999999988865431 11122334499999999999999
Q ss_pred cChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCChhHH
Q 003517 116 LDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGR 195 (813)
Q Consensus 116 ~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~ 195 (813)
+|.+.+||+++....+++.+++++.+......+++.. ++++ ..++.+|+++|+|++.++.++.++.| .+.++.+
T Consensus 78 l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~----~i~~-~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~ 151 (429)
T COG0025 78 LDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLP----GIPL-AAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRT 151 (429)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ChhH-HHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHH
Confidence 9999999999999999999999988776666666622 3443 57899999999999999999999977 7999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-Cc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CCchhHHHHHHH
Q 003517 196 IAMSAAAVNDVAAWVLLALAIALSSS-SS--SLIAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEG-EPVKELYVCITL 271 (813)
Q Consensus 196 l~ls~a~i~D~~~~~ll~l~~~~~~~-~~--~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~-~~~~e~~~~~~l 271 (813)
+..+++++||..+++++.+...+... +. .......++..++..+.++++++.+..|+.++.... .........+++
T Consensus 152 iL~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L 231 (429)
T COG0025 152 ILEGESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTL 231 (429)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHH
Confidence 99999999999999999888776553 22 123333333333444444444444444444443210 111344568899
Q ss_pred HHHHHHHHHHHHHChhHHHHHHHHhhhcC-----CCCCch-HHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHH
Q 003517 272 SMVLAASFVTDTIGIHALFGAFVVGIIMP-----KEGPFA-GVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWG 345 (813)
Q Consensus 272 ~~~l~~~~~ae~~g~~~~lgaf~aGL~l~-----~~~~~~-~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~ 345 (813)
...+..+.++|.+|.|++++++++|++.. +..+.. +...+.++.....++.-+.|++.|++++....... .++
T Consensus 232 ~~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~-~~~ 310 (429)
T COG0025 232 LLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLAL-GLL 310 (429)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh-hHH
Confidence 99999999999999999999999998773 112222 44445566776789999999999999999877652 356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC------CChHHHHHHHHHHhhhhHHHHHHHHhhccc-CCCChHH-----HHHHHH
Q 003517 346 LLLLVILNACFGKIVGTVVVAWSCK------VPLRESLALGFIMNTKGLVELIVLNIGKDR-KVLNDQA-----FAILVL 413 (813)
Q Consensus 346 ~~~~ii~~~~~~K~~~~~l~~~~~~------~~~re~~~lgl~l~~kG~v~l~~~~~~~~~-~~i~~~~-----~~~lvl 413 (813)
..++.++..+++|+++++...+..+ .+++|+++++|. ++||.++++++...... .....+. +.+++.
T Consensus 311 ~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w~-G~RG~vsla~al~~p~~~~~~~~~~i~~i~~~vIl~ 389 (429)
T COG0025 311 GLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSWA-GPRGVVSLALALLIPLELPGPARELILFIVFLVILF 389 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhhc-ccccHHHHHHHHHchhhccchhhhHHHHHHHHHHHH
Confidence 6667777889999999999988853 799999999994 99999999888665422 1111233 334444
Q ss_pred HHHHHHHhHHHHHHHhh
Q 003517 414 MALFTTFITTPILMAIY 430 (813)
Q Consensus 414 ~~vv~t~i~~plv~~l~ 430 (813)
++++.++..+|+.++..
T Consensus 390 Sl~v~g~t~~~l~~~~~ 406 (429)
T COG0025 390 SLLVQGLTLPPLAKKLE 406 (429)
T ss_pred HHHHHhhhHHHHHHHhc
Confidence 44444555555555443
No 14
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.93 E-value=9.2e-23 Score=235.35 Aligned_cols=371 Identities=12% Similarity=0.144 Sum_probs=254.7
Q ss_pred HHHHHHHHH-hccc-CCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHHh
Q 003517 46 AFTRFLAFL-LKPL-RQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILR 123 (813)
Q Consensus 46 ~~~~~~~~l-~~~l-~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~ 123 (813)
.++.+...+ -++. ++|..+..++.|+++|+...+... .+... -.-+.+-.+.+..++|..|+++|.+.+++
T Consensus 19 ~~~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~------~~~~~-l~~~lf~~~~LPpIlFe~g~~l~~~~f~~ 91 (559)
T TIGR00840 19 SLAKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPH------IDPPT-LDSSYFFLYLLPPIVLDAGYFMPQRNFFE 91 (559)
T ss_pred HHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCC------CccCC-cCHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 333344333 3444 499999999999999986433210 00000 11245666788889999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCChhHHHHHHH
Q 003517 124 TGKKSLGIALAGITLPFALGIGTSFVLRSTVL---KGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRIAMSA 200 (813)
Q Consensus 124 ~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~ 200 (813)
+.+.++.+|+.+++++.++.....+++..... .++++ ..++.+|+++|+|+|+.+..++++.+ .+.++-.++.++
T Consensus 92 n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~-~~allfGAiiSaTDPVAVlai~~~~~-v~~~L~~ll~gE 169 (559)
T TIGR00840 92 NLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGL-LDNLLFGSLISAVDPVAVLAVFEEYH-VNEKLYIIIFGE 169 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCH-HHHHHHhHHhcCCchHHHHHHHHhcC-CCcchhhheehh
Confidence 99999999999999988766555554432111 12333 57899999999999999999999999 799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcC--Cc-h-h---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHH
Q 003517 201 AAVNDVAAWVLLALAIALSSS--SS-S-L---IAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYVCITLSM 273 (813)
Q Consensus 201 a~i~D~~~~~ll~l~~~~~~~--~~-~-~---~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~~ 273 (813)
+++||.++++++.++..+... +. . . .....++...+..++++++++.+..++.|+....+ .....+++++
T Consensus 170 SllNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~~~---~~e~~l~l~~ 246 (559)
T TIGR00840 170 SLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHIR---QIEPLFVFLI 246 (559)
T ss_pred hhhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---hhHHHHHHHH
Confidence 999999999999877765431 11 1 1 11112222222355666667777777777764322 3345678888
Q ss_pred HHHHHHHHHHHChhHHHHHHHHhhhcCCC-----CCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHH
Q 003517 274 VLAASFVTDTIGIHALFGAFVVGIIMPKE-----GPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLL 348 (813)
Q Consensus 274 ~l~~~~~ae~~g~~~~lgaf~aGL~l~~~-----~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~ 348 (813)
+++++.++|.+|.|++++++++|+++.+. .+..+.-.+.+......++..+.|+++|+.+.... ....|...+
T Consensus 247 ~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~--~~~~~~~i~ 324 (559)
T TIGR00840 247 SYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTEN--HEWNWAFVV 324 (559)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--hhHHHHHHH
Confidence 99999999999999999999999999642 22223333445555577888999999999763221 112344444
Q ss_pred HHHHHHHHHHHHHHHHHHHh------cCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChHHHHHH-----HHHHHH
Q 003517 349 LVILNACFGKIVGTVVVAWS------CKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAIL-----VLMALF 417 (813)
Q Consensus 349 ~ii~~~~~~K~~~~~l~~~~------~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~~~~l-----vl~~vv 417 (813)
+.+++.++.|+++++..++. .++++||.+.++| .+.||.++++++....+.+.-..+.+..+ ++++++
T Consensus 325 ~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l~~~~~~~~~~i~~~t~~VVl~Tvlv 403 (559)
T TIGR00840 325 ATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLLDEKIFPYKFLFVTTTLVVVFFTVIF 403 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhCCCCCcchHHHHHHHHHeeehHHHHH
Confidence 45556678899888776543 4589999999999 59999999988765544333333333333 334444
Q ss_pred HHHhHHHHHHHhhc
Q 003517 418 TTFITTPILMAIYK 431 (813)
Q Consensus 418 ~t~i~~plv~~l~~ 431 (813)
....++|+++++.-
T Consensus 404 qG~T~~pl~~~L~l 417 (559)
T TIGR00840 404 QGGTIKPLVEVLKV 417 (559)
T ss_pred HHhhHHHHHHHhCC
Confidence 44555777776643
No 15
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.91 E-value=3.7e-22 Score=210.74 Aligned_cols=355 Identities=17% Similarity=0.169 Sum_probs=287.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhc
Q 003517 36 LIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLE 115 (813)
Q Consensus 36 ~~l~~i~lil~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle 115 (813)
.+++.-.++++++.+.+.++.|+|.|..+-.+..|++.|--++|.++. ++.+.-..++++++++++|..|+.
T Consensus 7 ~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~f--------dNy~~Ay~vg~lALaiILfdgG~~ 78 (574)
T COG3263 7 LILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEF--------DNYPFAYMVGNLALAIILFDGGFG 78 (574)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCccccccc--------CccHHHHHHHHHHHHHHhhcCccC
Confidence 444445577778888999999999999999999999999999987642 345777889999999999999999
Q ss_pred cChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCChhHH
Q 003517 116 LDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGR 195 (813)
Q Consensus 116 ~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~ 195 (813)
++++.+|...++++.++..+++++-.+....++++.. .+| ..++++|++..+|+.+.+..+|.+.+ +|.+++.
T Consensus 79 T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~---l~w---le~~LiGAiVgSTDAAAVF~lL~~~n-l~erv~s 151 (574)
T COG3263 79 TQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLN---LDW---LEGLLIGAIVGSTDAAAVFSLLGGKN-LNERVAS 151 (574)
T ss_pred CcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhc---cHH---HHHHHHHHhhccccHHHHHHHHccCC-hhhhhhh
Confidence 9999999999999999999999987766655555532 122 46799999999999999999999988 6999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-Cch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHH
Q 003517 196 IAMSAAAVNDVAAWVLLALAIALSSS-SSS--LIAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYVCITLS 272 (813)
Q Consensus 196 l~ls~a~i~D~~~~~ll~l~~~~~~~-~~~--~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~ 272 (813)
+..-++--||-.++.+..-.+.+... .+. ...+..++..+++.++.++..+++..|+++|..- .+..|..++++
T Consensus 152 tLEiESGtNDPmAvfLTitlieli~~get~l~~~~ll~f~~q~glG~l~G~~gg~l~~~~Inr~nL---d~GL~pil~la 228 (574)
T COG3263 152 TLEIESGSNDPMAVFLTITLIELIAGGETNLSWGFLLGFLQQFGLGLLLGLGGGKLLLQLINRINL---DSGLYPILALA 228 (574)
T ss_pred hEEeecCCCCceeeehhHHHHHHHhccccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcc---ccchhHHHHHH
Confidence 99999999999998776544444333 221 2223335677788888899999999999999832 25677889999
Q ss_pred HHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCc-hHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHHHHH
Q 003517 273 MVLAASFVTDTIGIHALFGAFVVGIIMPKEGPF-AGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVI 351 (813)
Q Consensus 273 ~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~-~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii 351 (813)
..++.+.+++.+|-|++++.+++|+.+.|.+-. ++.+.+-.+.+ .++..-+.|...|+...++.+.. ...+.+.+.+
T Consensus 229 ~~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~-twlaQI~MFlvLGLLvtPsql~~-iavPailL~l 306 (574)
T COG3263 229 GGLLIFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGL-AWLAQILMFLVLGLLVTPSQLLP-IAIPAILLSL 306 (574)
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccH-HHHHHHHHHHHHHHhcCHhhhhH-hhHHHHHHHH
Confidence 999999999999999999999999999984433 34555555666 67778888999999999988876 4555566667
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChHH-HHHH
Q 003517 352 LNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQA-FAIL 411 (813)
Q Consensus 352 ~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~-~~~l 411 (813)
...+++|.+++|+...-+++++||.++++| -+-||.+.++++....-.|.-+.+. |++.
T Consensus 307 ~mifvaRP~aV~l~l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~l~FNvA 366 (574)
T COG3263 307 WMIFVARPLAVFLGLIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENARLFFNVA 366 (574)
T ss_pred HHHHHHhHHHHHHhhcccccCccchheeeh-hhcccchhhhHhhhHHhcCCccceEEeehh
Confidence 777899999999999999999999999999 5999999999988776666655543 4443
No 16
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.75 E-value=1.3e-16 Score=177.14 Aligned_cols=385 Identities=17% Similarity=0.181 Sum_probs=253.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcccC---CChhHHHHHHHHhhcccccCCchhhhc-----cccCCCchHHHHHHHHHHHHHH
Q 003517 37 IILQICLVVAFTRFLAFLLKPLR---QPRVIAEIIGGVLLGPSALGRSERFLN-----TVFPKKSMTVLETLANIGLLFF 108 (813)
Q Consensus 37 ~l~~i~lil~~~~~~~~l~~~l~---~P~ii~~ilaGiilGP~~lg~~~~~~~-----~lfp~~~~~~l~~l~~lgl~~l 108 (813)
-++-.+++++++.+.++++++-| +|.-+.-++.|+++|-..........+ ..|.+ +.+-.+-+--+
T Consensus 36 al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~------~~ff~vLLPpi 109 (575)
T KOG1965|consen 36 ALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSP------DLFFLVLLPPI 109 (575)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecc------cHHHHHhhchh
Confidence 34445667777888999999888 999999999999999543221110000 01111 12334445558
Q ss_pred HHHHhhccChhHHHhcchhhHHHHHHHHHHHH-HHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcC
Q 003517 109 LFLVGLELDIKSILRTGKKSLGIALAGITLPF-ALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELK 187 (813)
Q Consensus 109 lF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ 187 (813)
.|..|.+++.+.++|+......+++.|..+.. ++|.++.++.......++.+ ..++++|+++|.|+|..+..+++|++
T Consensus 110 if~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f-~d~L~fGaliSATDPVtvLaIfnel~ 188 (575)
T KOG1965|consen 110 IFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSF-KDCLAFGALISATDPVTVLAIFNELG 188 (575)
T ss_pred hhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccH-HHHHHHhhHhcccCchHHHHHHHHhC
Confidence 89999999999999999999999998877754 45555444433222335555 67899999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chh---HHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCC
Q 003517 188 LLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSS-SSL---IAVWVLLS----GAAFVVFAVFVIRPVLSLMARRSPEG 259 (813)
Q Consensus 188 l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~~~~-~~~---~~~~~~~~----~i~~~~~~~~v~~~~~~~i~~~~~~~ 259 (813)
....+-.++-+++++||.++++++..+....... +.. ..+..++. .++.++..+++...+.+.+.-|.
T Consensus 189 -vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l~~--- 264 (575)
T KOG1965|consen 189 -VDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYLRR--- 264 (575)
T ss_pred -CCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 7789999999999999999999998777655431 111 12222222 22233333333333333332221
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCC-----CCchHHHHHHHHHHHHHhhHHHHHHHhccc-c
Q 003517 260 EPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKE-----GPFAGVLIEKIEDMVSGLFLPLYFAASGLK-T 333 (813)
Q Consensus 260 ~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~-----~~~~~~l~~kl~~~~~~~~~plFF~~~G~~-~ 333 (813)
.+ .....+.+++....+++||.+|+++++..++.|+++++. .+..+.-.+....+...+...+-|+++|+. +
T Consensus 265 ~~--~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f 342 (575)
T KOG1965|consen 265 TP--SLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAF 342 (575)
T ss_pred Cc--HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 22 334677899999999999999999999999999999853 333445555566666777778889999963 2
Q ss_pred chhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC----------CChHHHHHHHHHHhhhhHHHHHHHHhhc-cc--
Q 003517 334 NVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCK----------VPLRESLALGFIMNTKGLVELIVLNIGK-DR-- 400 (813)
Q Consensus 334 dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~----------~~~re~~~lgl~l~~kG~v~l~~~~~~~-~~-- 400 (813)
+.....- ..........++.+++|..-.+-.+.+.+ .|.++-..+.|.=.-||.++++++.--. +.
T Consensus 343 ~~~k~~~-~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~~ 421 (575)
T KOG1965|consen 343 DFQKHVY-KSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSPH 421 (575)
T ss_pred cccceee-echHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhcccccc
Confidence 3333221 11223444455567778776655554432 4555566666654479999988774321 11
Q ss_pred ---CCCChHHHHHHHHHHHHHHHhHHHHHHHhhccccc
Q 003517 401 ---KVLNDQAFAILVLMALFTTFITTPILMAIYKPARK 435 (813)
Q Consensus 401 ---~~i~~~~~~~lvl~~vv~t~i~~plv~~l~~~~~~ 435 (813)
..+-..+..+.++++++....+.|+++++.....+
T Consensus 422 ~~~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~~~~~ 459 (575)
T KOG1965|consen 422 TGGQTIFTTTLVVVLFTVLVFGGSTKPMLSYLMISVGV 459 (575)
T ss_pred ccccEEEEeeeeeeeeeeeeeCCccHHHHHHhcccccc
Confidence 22223334445566677778889999988754433
No 17
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.74 E-value=3.9e-15 Score=163.20 Aligned_cols=270 Identities=20% Similarity=0.296 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHH-------HhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHH
Q 003517 96 VLETLANIGLLFFLFLVGLELDIKSI-------LRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMG 168 (813)
Q Consensus 96 ~l~~l~~lgl~~llF~~Gle~d~~~l-------~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg 168 (813)
..+.+.+--..+|.|.+|+|+.-+.+ ||..- ...-++.|+++|.++-.. +... .+ ...--+|
T Consensus 62 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~l-P~~aAlGGm~vPaliy~~----~n~~----~~--~~~~GW~ 130 (423)
T PRK14853 62 LGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAAL-PVAAALGGMIVPALIYVA----VNLA----GG--GALRGWA 130 (423)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHH-HHHHHHHhHHHHHHHHHH----HhCC----ch--hhhhhhh
Confidence 44556666677899999999954433 33322 235677888888754332 2111 00 1112222
Q ss_pred HHHhhccHHHHHHHHHHcCc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 003517 169 VSLSITAFPVLARILAELKL-LTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRP 247 (813)
Q Consensus 169 ~~ls~Ts~~vv~~iL~el~l-~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~ 247 (813)
+-+.|+.+....+|..+|- .+++++...++.+++||+.+++++++.. ++ .....+.......+ ++.
T Consensus 131 -Ip~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY---t~--~i~~~~L~~a~~~~--~~l----- 197 (423)
T PRK14853 131 -IPTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY---TS--ELNLEALLLALVPL--ALF----- 197 (423)
T ss_pred -hhhhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc---CC--CCCHHHHHHHHHHH--HHH-----
Confidence 3456788888999999874 4889999999999999999999888765 22 22222222221111 111
Q ss_pred HHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCC-----------CchHHHHHHHHHH
Q 003517 248 VLSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEG-----------PFAGVLIEKIEDM 316 (813)
Q Consensus 248 ~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~-----------~~~~~l~~kl~~~ 316 (813)
|+.+|.+ +++.+.++++. +.+.+..+..|+|+.+|+|++|+++|..+ +..++++++++++
T Consensus 198 ---~~l~~~~----V~~~~~Y~ilg--~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p~ 268 (423)
T PRK14853 198 ---WLLVQKR----VRKWWLLLPLG--VATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRPL 268 (423)
T ss_pred ---HHHHHcC----CchhhHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHHH
Confidence 2222321 33444444443 35666889999999999999999999411 3357899999999
Q ss_pred HHHhhHHHH-HHHhccccch-hhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHh
Q 003517 317 VSGLFLPLY-FAASGLKTNV-ATIRGATSWGLLLLVILNACFGKIVGTVVVAWSC----------KVPLRESLALGFIMN 384 (813)
Q Consensus 317 ~~~~~~plF-F~~~G~~~dl-~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~re~~~lgl~l~ 384 (813)
+..+++|+| |+..|.++|. ..+.+...-.....+++..++||.+|.+..++.. +++|++-..+|+ ++
T Consensus 269 V~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~-L~ 347 (423)
T PRK14853 269 SAGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVAL-LA 347 (423)
T ss_pred HHHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHH-HH
Confidence 999999999 9999999986 4342211112445566777899999987776652 567888888888 56
Q ss_pred hhh-HHHHHHHHhhcc
Q 003517 385 TKG-LVELIVLNIGKD 399 (813)
Q Consensus 385 ~kG-~v~l~~~~~~~~ 399 (813)
..| ++++.+.+.+++
T Consensus 348 GIGFTmSlFI~~LAf~ 363 (423)
T PRK14853 348 GIGFTVSLLIGELAFG 363 (423)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 666 778888888883
No 18
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.70 E-value=2.1e-15 Score=154.75 Aligned_cols=343 Identities=16% Similarity=0.208 Sum_probs=236.8
Q ss_pred HHHHHHHHHHHHHhcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHH
Q 003517 42 CLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSI 121 (813)
Q Consensus 42 ~lil~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l 121 (813)
+.+.+++..--++-+++-+...+--.+.|+++||+++++.++.. . .+......-++.+-+..=.|.+++|+.-..+
T Consensus 20 ~F~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~---w-gn~d~it~ei~RvvLcvqvfava~eLPr~Y~ 95 (467)
T KOG4505|consen 20 GFVSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNS---W-GNKDYITYEISRVVLCVQVFAVAMELPRAYM 95 (467)
T ss_pred hHHHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCcc---c-cCcchhhhhhhhhhHhHHHHHHHHhccHHHH
Confidence 34445555555556677677777778899999999988765421 0 1122444557777788889999999999999
Q ss_pred HhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHc---CccCChhHHHHH
Q 003517 122 LRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAEL---KLLTTDLGRIAM 198 (813)
Q Consensus 122 ~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el---~l~~s~~g~l~l 198 (813)
.++++..+.+-..-++.-+++.+++.|.+.. ..++ ..++.+++.++.|+|.....+..+- |..+.++..+..
T Consensus 96 l~~w~Si~vlllpVmi~gwlvs~~fvy~l~p----~lnf-~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~ 170 (467)
T KOG4505|consen 96 LEHWRSIFVLLLPVMIIGWLVSFGFVYALIP----NLNF-LTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLA 170 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cccH-HHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHH
Confidence 9999998877666666666666655555542 2233 4678899999999987666666644 345778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC------Cchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHH
Q 003517 199 SAAAVNDVAAWVLLALAIALSSS------SSSL---IAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYVCI 269 (813)
Q Consensus 199 s~a~i~D~~~~~ll~l~~~~~~~------~~~~---~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~ 269 (813)
+++..||..++.++.+.+.+... +..+ ..++--...+.++.+++++.|..+++-.++. --..|+|+.+
T Consensus 171 AESGcNDGMaipflflai~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkr---lid~eSfl~~ 247 (467)
T KOG4505|consen 171 AESGCNDGMAIPFLFLAIDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKR---LIDRESFLIF 247 (467)
T ss_pred HhcCCCCCcchhHHHHHHHHHhcCchhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cccHHHHHHH
Confidence 99999999999998877765433 1111 1122222223344444555555555544443 2346888999
Q ss_pred HHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCchHHHH-HHHHHHHHHhhHHHHHHHhccccchhhhhch----hhH
Q 003517 270 TLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLI-EKIEDMVSGLFLPLYFAASGLKTNVATIRGA----TSW 344 (813)
Q Consensus 270 ~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~~~~l~-~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~----~~~ 344 (813)
-+.+++.++.+.+.+|.+-++-.|.||.+++-+..+.++.. .++..+...++.-.||++.|..++++.++.+ ..|
T Consensus 248 ~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vw 327 (467)
T KOG4505|consen 248 YVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVW 327 (467)
T ss_pred HHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHH
Confidence 99999999999999999999999999999997666655443 3566777778888999999999998877543 245
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHhhhhHHHHHHHHhh
Q 003517 345 GLLLLVILNACFGKIVGTVVVAWSC--KVPLRESLALGFIMNTKGLVELIVLNIG 397 (813)
Q Consensus 345 ~~~~~ii~~~~~~K~~~~~l~~~~~--~~~~re~~~lgl~l~~kG~v~l~~~~~~ 397 (813)
-.+++-+.+.+.-|+.++++.-... =.+|||++++|. .+|.|.-++..+..+
T Consensus 328 rlvilsi~iif~RRip~v~l~kp~iPdikswkEALFvGh-FGPIGVgAly~alla 381 (467)
T KOG4505|consen 328 RLVILSITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGH-FGPIGVGALYYALLA 381 (467)
T ss_pred HHHHHHHHHHHhcccceEEEeccCCcchhhHHHHHHhcc-CCCccHHHHHHHHHH
Confidence 5444444444444544444332221 127999999999 799998877666554
No 19
>PRK11175 universal stress protein UspE; Provisional
Probab=99.65 E-value=2.4e-15 Score=163.56 Aligned_cols=281 Identities=11% Similarity=0.089 Sum_probs=165.7
Q ss_pred eeEEEeecCCChhhHHHHHHhhccCCCCCceEEEEEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchH-HHHHHHHhh
Q 003517 454 RILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDY-IVIAFEAYQ 532 (813)
Q Consensus 454 riLv~v~~~~~v~~li~Ll~~~~~~~~s~~~v~~LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~-i~~af~~~~ 532 (813)
|||+|++..+.....++.+..++.. ...+++++|+++-.....+.........+...... +..++ +.+..+.+.
T Consensus 5 ~ILv~~D~s~~~~~al~~a~~lA~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~ 79 (305)
T PRK11175 5 NILVVIDPNQDDQPALRRAVYLAQR--NGGKITAFLPIYDFSYEMTTLLSPDEREAMRQGVI---SQRTAWIREQAKPYL 79 (305)
T ss_pred eEEEEcCCCccccHHHHHHHHHHHh--cCCCEEEEEeccCchhhhhcccchhHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence 6999999999999888887777633 45679999987532211110000000000000000 01111 112222222
Q ss_pred hcCceEEEeeEeeccCCChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccCCCceEEEecCCCC
Q 003517 533 QLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIFVDRGLG 612 (813)
Q Consensus 533 ~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~apCsVgIlvdrg~~ 612 (813)
..+++++...... .+.++.|++.|+++++||||+|+|++....+.+.+ ..-+++++++||||.+.-++..
T Consensus 80 -~~~~~~~~~v~~~--g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~g------s~~~~l~~~~~~pvlvv~~~~~- 149 (305)
T PRK11175 80 -DAGIPIEIKVVWH--NRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFT------PTDWHLLRKCPCPVLMVKDQDW- 149 (305)
T ss_pred -hcCCceEEEEecC--CCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccC------hhHHHHHhcCCCCEEEeccccc-
Confidence 2356665544332 57789999999999999999999987655544433 3356899999999977643211
Q ss_pred CCCcccccccceeEEEecCCCcCh-------HHHHHHHHHHhcCC-CeEEEEEEeecCCCCCcccCCCCCCcccccccCC
Q 003517 613 GTTQVVASEVSYSVVVPFFGGLDD-------CEALAYGMRMAEHP-GIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRG 684 (813)
Q Consensus 613 ~~~~~~~~~~~~~i~v~f~GG~dd-------reAL~~a~rma~~~-~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (813)
...++|+++.+|++++ +.|+++|.++|+.. +++++++++.+....... .+ +.- ...+
T Consensus 150 --------~~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~-~~-----~~~-~~~~ 214 (305)
T PRK11175 150 --------PEGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIA-IE-----LPE-FDPS 214 (305)
T ss_pred --------CCCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhcc-cc-----ccc-cchh
Confidence 1246899999998753 67999999999887 999999999753221100 00 000 0001
Q ss_pred CCccccH---HHHHHHHHhhhccCCCCeEEEEEEecChHHHHHHHhccC--CCcEEEEccCCCCCCCCCCccccccCccc
Q 003517 685 DNDQVGD---DAIISDFKSIASKNQESITLEERLVESSQEIAGVLKSMN--KCNLFLVGRMAPTAPLMDTKSAEYCSELG 759 (813)
Q Consensus 685 ~~~~~~d---~~~l~~~~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~--~~DLviVGr~~~~~gl~~w~~~e~~~eLG 759 (813)
+.++... ++.++++.++. + +...+..+..|.....+++..+ +.||+|+|.++ .+|+.+| =+|
T Consensus 215 ~~~~~~~~~~~~~l~~~~~~~--~---~~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~-~~~~~~~-------llG 281 (305)
T PRK11175 215 VYNDAIRGQHLLAMKALRQKF--G---IDEEQTHVEEGLPEEVIPDLAEHLDAELVILGTVG-RTGLSAA-------FLG 281 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHh--C---CChhheeeccCCHHHHHHHHHHHhCCCEEEECCCc-cCCCcce-------eec
Confidence 1111111 13444444433 1 1111222323322222333333 39999999998 7888776 378
Q ss_pred cchhhhhcCCCCCcccEEEEe
Q 003517 760 PVGCFLASSEFSTTASVVVLQ 780 (813)
Q Consensus 760 ~igd~las~d~~~~~SvLvvq 780 (813)
-..+-++.. .+++||||.
T Consensus 282 S~a~~v~~~---~~~pVLvv~ 299 (305)
T PRK11175 282 NTAEHVIDH---LNCDLLAIK 299 (305)
T ss_pred chHHHHHhc---CCCCEEEEc
Confidence 888888875 778999996
No 20
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.47 E-value=1e-11 Score=133.98 Aligned_cols=270 Identities=21% Similarity=0.330 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHH---hcchhh---HHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCChhHHHHHHH
Q 003517 96 VLETLANIGLLFFLFLVGLELDIKSIL---RTGKKS---LGIALAGITLPFALGIGTSFVLRST-VLKGANQAPLLVFMG 168 (813)
Q Consensus 96 ~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~l~lg 168 (813)
..+.+.+--+.+|.|.+|+|+.-+.+. ++.||+ ..-++.|+++|.++-..+.. ... ...+|.. +.+
T Consensus 52 l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy~~~n~--~~~~~~~GW~I-P~A---- 124 (373)
T TIGR00773 52 LLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIYLAFNA--NDPITREGWAI-PAA---- 124 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHhheec--CCCcccCcccc-ccH----
Confidence 445566666778999999999887775 233333 34566777888654322111 100 0123322 111
Q ss_pred HHHhhccHHHHHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 003517 169 VSLSITAFPVLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRPV 248 (813)
Q Consensus 169 ~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~ 248 (813)
+=++|++-...+-..+ .+..+....++-+++||+.++++.++... +.....+.......+.+
T Consensus 125 ---TDiAFalgvlallG~~-vP~~lr~FLl~LAIvDDlgaI~vIA~FYt-----~~i~~~~L~~a~~~~~~--------- 186 (373)
T TIGR00773 125 ---TDIAFALGVMALLGKR-VPLALKIFLLALAIIDDLGAIVIIALFYT-----NDLSMAALLVAAVAIAV--------- 186 (373)
T ss_pred ---HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhhHhheeeecC-----CCCCHHHHHHHHHHHHH---------
Confidence 1122332222222223 68888999999999999999988776541 22222333232221111
Q ss_pred HHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCc----hHHHHHHHHHHHHHhhHHH
Q 003517 249 LSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPF----AGVLIEKIEDMVSGLFLPL 324 (813)
Q Consensus 249 ~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~----~~~l~~kl~~~~~~~~~pl 324 (813)
.++.+|.. +++...+..+. ++..+++ ...|+|+.+|+|++|+++|...+. .+++++.+++.+..+++|+
T Consensus 187 -l~~~~~~~----v~~~~~y~~lg-vllW~~~-~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~lilPl 259 (373)
T TIGR00773 187 -LAVLNRCG----VRRLGPYMLVG-VILWFAV-LKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLILPL 259 (373)
T ss_pred -HHHHHHcC----CchhhHHHHHH-HHHHHHH-HHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 12233331 23333333333 3333333 799999999999999999975333 3566677777788999999
Q ss_pred H-HHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHhhhh-HHHHH
Q 003517 325 Y-FAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSC----------KVPLRESLALGFIMNTKG-LVELI 392 (813)
Q Consensus 325 F-F~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~re~~~lgl~l~~kG-~v~l~ 392 (813)
| |+..|.++|...+.. ........+++..+++|.+|++..++.. +++|++-.-+|+ ++..| ++++.
T Consensus 260 FAFanAGv~l~~~~~~~-~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~-L~GIGFTmSlf 337 (373)
T TIGR00773 260 FAFANAGVSLQGVSLNG-LTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGV-LCGIGFTMSIF 337 (373)
T ss_pred HHHHhcCeeeecCcchh-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHH
Confidence 9 999999998755433 2223355667777899999998887752 567888888887 46666 67777
Q ss_pred HHHhhcc
Q 003517 393 VLNIGKD 399 (813)
Q Consensus 393 ~~~~~~~ 399 (813)
+.+.+.+
T Consensus 338 I~~LAf~ 344 (373)
T TIGR00773 338 IASLAFG 344 (373)
T ss_pred HHHHhcC
Confidence 8888874
No 21
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.23 E-value=6.4e-09 Score=114.17 Aligned_cols=269 Identities=22% Similarity=0.338 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHHHh---cchhh---HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHH
Q 003517 95 TVLETLANIGLLFFLFLVGLELDIKSILR---TGKKS---LGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMG 168 (813)
Q Consensus 95 ~~l~~l~~lgl~~llF~~Gle~d~~~l~~---~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg 168 (813)
...+.+.+.-+.+|.|.+|+|+.-+.+.. +.|++ ..-++.|+++|.++-..+.. ......+|..
T Consensus 67 sl~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlIY~~~n~--~~~~~~GWgI-------- 136 (438)
T PRK14856 67 SLHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLIYFFLNA--DTPSQHGFGI-------- 136 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHHHhheec--CCCccCcccc--------
Confidence 34556677777889999999998777652 33333 34566777777654322211 1000112322
Q ss_pred HHHhhccHHHHHHHHHHc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 003517 169 VSLSITAFPVLARILAEL-KLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRP 247 (813)
Q Consensus 169 ~~ls~Ts~~vv~~iL~el-~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~ 247 (813)
-+ .|+.+....++.=+ +..++.+....++-+++||+.++++.++... +.....|..+...++.++
T Consensus 137 -Pm-ATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt-----~~i~~~~L~~a~~~~~~l------- 202 (438)
T PRK14856 137 -PM-ATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT-----TNLKFAWLLGALGVVLVL------- 202 (438)
T ss_pred -cc-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC-----CCCcHHHHHHHHHHHHHH-------
Confidence 11 22333333333222 2257788899999999999999988776541 222333333332222111
Q ss_pred HHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCc----------------------
Q 003517 248 VLSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPF---------------------- 305 (813)
Q Consensus 248 ~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~---------------------- 305 (813)
++.+|.. ++....++.+.+++.. ....-|+|+.++..++|+++|..++.
T Consensus 203 ---~~ln~~~----v~~~~~Y~~~G~~lW~--~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (438)
T PRK14856 203 ---AVLNRLN----VRSLIPYLLLGVLLWF--CVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGAL 273 (438)
T ss_pred ---HHHHHcC----CccccHHHHHHHHHHH--HHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhccccccc
Confidence 2223321 2222334444443333 34468999999999999999953221
Q ss_pred ----------------------hHHHHHHHHHHHHHhhHHHH-HHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHH
Q 003517 306 ----------------------AGVLIEKIEDMVSGLFLPLY-FAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGT 362 (813)
Q Consensus 306 ----------------------~~~l~~kl~~~~~~~~~plF-F~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~ 362 (813)
.+++++.+.+.+..+.+|+| |...|..++...... .-.....+++..++||.+|.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~--~~pv~lGI~~GLvvGK~lGI 351 (438)
T PRK14856 274 LTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLE--VDKVLLGVILGLCLGKPLGI 351 (438)
T ss_pred cccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhc--cCcHHHHHHHHHHhcchHHH
Confidence 14566778888888999999 999999998542211 11233445566678999988
Q ss_pred HHHHHhc----------CCChHHHHHHHHHHhhhh-HHHHHHHHhhcc
Q 003517 363 VVVAWSC----------KVPLRESLALGFIMNTKG-LVELIVLNIGKD 399 (813)
Q Consensus 363 ~l~~~~~----------~~~~re~~~lgl~l~~kG-~v~l~~~~~~~~ 399 (813)
+..++.. +++|++-+-.|+ ++..| ++++.+.+.+++
T Consensus 352 ~~~s~lavkl~~a~lP~g~~w~~l~gv~~-LaGIGFTmSLFIa~LAF~ 398 (438)
T PRK14856 352 FLITFISEKLKITARPKGISWWHILGAGL-LAGIGFTMSMFISNLAFT 398 (438)
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHhcC
Confidence 8777652 567888888887 56666 677888888884
No 22
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.21 E-value=1.3e-10 Score=109.42 Aligned_cols=131 Identities=21% Similarity=0.313 Sum_probs=97.6
Q ss_pred eeEEEeecCCChhhHHHHHHhhccCCCCCceEEEEEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHHHHHHHHhhh
Q 003517 454 RILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQ 533 (813)
Q Consensus 454 riLv~v~~~~~v~~li~Ll~~~~~~~~s~~~v~~LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 533 (813)
|||+|++++++...+++.+..++.. .+..++++|+++.+....... ... . ....++.++.+..+..
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~--~~~~v~ll~v~~~~~~~~~~~--~~~-~---------~~~~~~~~~~~~~~~~ 66 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARA--QNGEIIPLNVIEVPNHSSPSQ--LEV-N---------VQRARKLLRQAERIAA 66 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhc--CCCeEEEEEEEecCCCCCcch--hHH-H---------HHHHHHHHHHHHHHhh
Confidence 6999999999999999999999754 577899999999765433210 000 0 0234556666666655
Q ss_pred cCceEEEeeEeeccCCChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccCCCceEEE
Q 003517 534 LSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIF 606 (813)
Q Consensus 534 ~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~apCsVgIl 606 (813)
..++.+++....+ .+..++||+.|+++++|+|++|+|+++...+.+ +++++.+|++++||||+|+
T Consensus 67 ~~g~~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~------lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 67 SLGVPVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSLRDRL------FGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred hcCCceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCcccee------cCchHHHHHhcCCCCEEEe
Confidence 5567777766555 468999999999999999999999887664443 3345779999999999875
No 23
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.19 E-value=7e-12 Score=138.94 Aligned_cols=368 Identities=14% Similarity=0.179 Sum_probs=231.0
Q ss_pred HHHHHHHHhcccC--CChhHHHHHHHHhhcccccCC--chhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHH
Q 003517 47 FTRFLAFLLKPLR--QPRVIAEIIGGVLLGPSALGR--SERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSIL 122 (813)
Q Consensus 47 ~~~~~~~l~~~l~--~P~ii~~ilaGiilGP~~lg~--~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~ 122 (813)
++.+.--+..+++ .|.-...|+.|+++|-...+. +.+ +.-++ +.+--.-+--++|-+|.-|.-+.+.
T Consensus 53 LaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~~-----~~L~s----~vFFlyLLPPIvlDAGYfMp~r~Ff 123 (670)
T KOG1966|consen 53 LAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATIAP-----FFLES----DVFFLYLLPPIVLDAGYFMPNRAFF 123 (670)
T ss_pred HHHhcccccccccccCchhHHHHHHHHHHHHHHHhhhcccc-----ccccc----cchhhhhcCHHHhcccccCccHHHH
Confidence 3344333444444 788888899999998544322 111 00000 0111111223789999999999999
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHH--hhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCChhHHHHHHH
Q 003517 123 RTGKKSLGIALAGITLPFALGIGTSFVLRS--TVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRIAMSA 200 (813)
Q Consensus 123 ~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~ 200 (813)
.|...++..|+.|.+.-.+.-.+..|.+.. .++...+. ...+++|...|..+|..|..+.+|.. .|.-+=-++.++
T Consensus 124 ~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~~gl-ld~LlFgSLIsAVDPVAVLaVFEEih-VNe~LfI~VFGE 201 (670)
T KOG1966|consen 124 ENLGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMSIGL-LDILLFGSLISAVDPVAVLAVFEEIH-VNEVLFIIVFGE 201 (670)
T ss_pred hccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchH-HHHHHHHHHHHhcCchhhhhhhhhhc-cccEEEeeeehh
Confidence 999999999999998854433333333322 22212222 35678899999999999999999999 788888899999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC-------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHH
Q 003517 201 AAVNDVAAWVLLALAIALSSSS-------SSLIAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKELYVCITLSM 273 (813)
Q Consensus 201 a~i~D~~~~~ll~l~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~~ 273 (813)
+++||.+.++++-+...+..-+ +.......++...+.+++++.+++.+.....|.+.. ++-..-++++.+
T Consensus 202 SLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~~---vrviePvfif~~ 278 (670)
T KOG1966|consen 202 SLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTKH---VRVLEPVFIFLL 278 (670)
T ss_pred hhhcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhcc---eeeecchhhhhH
Confidence 9999999999987766543221 001111122222223334444555555555555532 222234778999
Q ss_pred HHHHHHHHHHHChhHHHHHHHHhhhcCCC--CCchHHHHHHHHH---HHHHhhHHHHHHHhccccchhhhhchhhHHHHH
Q 003517 274 VLAASFVTDTIGIHALFGAFVVGIIMPKE--GPFAGVLIEKIED---MVSGLFLPLYFAASGLKTNVATIRGATSWGLLL 348 (813)
Q Consensus 274 ~l~~~~~ae~~g~~~~lgaf~aGL~l~~~--~~~~~~l~~kl~~---~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~ 348 (813)
...+|..+|.+++|++++..+.|+++... ....++....+.+ ..+..--++-|++.|.++=-. +..+.|..++
T Consensus 279 pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~--~h~wd~~Fi~ 356 (670)
T KOG1966|consen 279 PYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSS--NHHWDFAFIC 356 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCC--cceeehhhhh
Confidence 99999999999999999999999999742 1122222222222 234556677788888876322 2224566666
Q ss_pred HHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChH-----HHHHHHHHHHH
Q 003517 349 LVILNACFGKIVGTVVVAWSC------KVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQ-----AFAILVLMALF 417 (813)
Q Consensus 349 ~ii~~~~~~K~~~~~l~~~~~------~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~-----~~~~lvl~~vv 417 (813)
+-++.+.+.|++++...+++. +++.+|.+.++.+ +-||.+++.+...--...+...+ +..++.+++.+
T Consensus 357 ~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsyG-GLRGAiaF~LV~lid~~~vp~K~~Fvttti~VIfFTVfl 435 (670)
T KOG1966|consen 357 LTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSYG-GLRGAIAFGLVVLIDGAKVPAKNMFVTTTIAVIFFTVFL 435 (670)
T ss_pred hHHHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeecC-CcchhhheeEEEEeccccCCcccceEeeeeEEEeeeeee
Confidence 667777888999988777764 5677888888775 77887765544332223333233 33334455555
Q ss_pred HHHhHHHHHHHhhc
Q 003517 418 TTFITTPILMAIYK 431 (813)
Q Consensus 418 ~t~i~~plv~~l~~ 431 (813)
..+..-|+++|+--
T Consensus 436 QGiTIkplvk~L~V 449 (670)
T KOG1966|consen 436 QGITIKPLVKFLKV 449 (670)
T ss_pred cccchHHHHHHHcc
Confidence 56667899998753
No 24
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.11 E-value=2.3e-08 Score=108.19 Aligned_cols=269 Identities=21% Similarity=0.294 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHh---cchhh---HHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCChhHHHHHHH
Q 003517 96 VLETLANIGLLFFLFLVGLELDIKSILR---TGKKS---LGIALAGITLPFALGIGTSFVLRST-VLKGANQAPLLVFMG 168 (813)
Q Consensus 96 ~l~~l~~lgl~~llF~~Gle~d~~~l~~---~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~l~lg 168 (813)
..+.+.+--+.+|.|.+|+|+.-+.+.. +.|++ +.-++.|+++|.++-..+.. +.. ...+|..
T Consensus 59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy~~~n~--g~~~~~~GWgI-------- 128 (389)
T PRK09560 59 LLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYAAFNY--NNPETLRGWAI-------- 128 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHheeec--CCCcccCcccc--------
Confidence 3455666667789999999998777652 33332 34566777888654332211 100 0123332
Q ss_pred HHHhhccHHHHHHHHHHc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 003517 169 VSLSITAFPVLARILAEL-KLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRP 247 (813)
Q Consensus 169 ~~ls~Ts~~vv~~iL~el-~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~ 247 (813)
-+ .|+.+....++.=+ +..+..+....++-+++||+.++++.++... +.....|......++.++
T Consensus 129 -Pm-ATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt-----~~i~~~~L~~a~~~~~~l------- 194 (389)
T PRK09560 129 -PA-ATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT-----SDLSLPALALAAIAIAVL------- 194 (389)
T ss_pred -cc-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC-----CCCCHHHHHHHHHHHHHH-------
Confidence 11 22333333333322 2367888999999999999999988776541 222333333322221111
Q ss_pred HHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCc------hHHHHHHHHHHHHHhh
Q 003517 248 VLSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPF------AGVLIEKIEDMVSGLF 321 (813)
Q Consensus 248 ~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~------~~~l~~kl~~~~~~~~ 321 (813)
++.+|.. .+....+..+.+++.. ....-|+|+.++..++|+++|...+. .+++++++++.+..+.
T Consensus 195 ---~~ln~~~----v~~~~~Y~~~G~~lW~--~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~~I 265 (389)
T PRK09560 195 ---FLLNRLG----VTKLTPYLIVGAILWF--AVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAFAI 265 (389)
T ss_pred ---HHHHHcC----CccchHHHHHHHHHHH--HHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhhhh
Confidence 2223321 2233344444443333 33468999999999999999963221 3678899999988888
Q ss_pred HHHH-HHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHhhhh-HH
Q 003517 322 LPLY-FAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSC----------KVPLRESLALGFIMNTKG-LV 389 (813)
Q Consensus 322 ~plF-F~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~re~~~lgl~l~~kG-~v 389 (813)
+|+| |...|..++-..+.+ ..-.....+++..++||.+|.++.++.. +++|++-..+|+ ++..| ++
T Consensus 266 lPlFAlaNAGV~l~~~~~~~-~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~-L~GIGFTm 343 (389)
T PRK09560 266 LPLFAFANAGVSLAGISLSS-LTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSV-LCGIGFTM 343 (389)
T ss_pred HHHHHhhcCCeeecCCcHHh-ccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHH
Confidence 9999 889999884222221 1112334455666789999888777652 457888888887 46666 67
Q ss_pred HHHHHHhhcc
Q 003517 390 ELIVLNIGKD 399 (813)
Q Consensus 390 ~l~~~~~~~~ 399 (813)
++.+.+.+..
T Consensus 344 SLFIa~LAF~ 353 (389)
T PRK09560 344 SLFIGSLAFG 353 (389)
T ss_pred HHHHHHhhcC
Confidence 7788888873
No 25
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.10 E-value=6.4e-08 Score=105.92 Aligned_cols=265 Identities=23% Similarity=0.297 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHH---hcchhh---HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHH
Q 003517 96 VLETLANIGLLFFLFLVGLELDIKSIL---RTGKKS---LGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGV 169 (813)
Q Consensus 96 ~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~ 169 (813)
..+.+.+--+.+|.|.+|+|+.-+.+. ++.|++ ..-++.|+++|.++-..+.. +.....+|. +
T Consensus 63 l~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlIy~~~n~--~~~~~~GWg---------I 131 (423)
T PRK14855 63 LEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAALYTALNA--GGPGASGWG---------V 131 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHHHheeec--CCCccCccc---------c
Confidence 345566666778999999999887774 233333 34566777777654222111 100011222 2
Q ss_pred HHhhccHHHHHHHHHHcC-ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 003517 170 SLSITAFPVLARILAELK-LLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRPV 248 (813)
Q Consensus 170 ~ls~Ts~~vv~~iL~el~-l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~ 248 (813)
-+ .|+.+....+|.=+| ..+..+....++-+++||+.++++.++... + .....+..+...++.++
T Consensus 132 Pm-ATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~--~i~~~~L~~a~~~~~~l-------- 197 (423)
T PRK14855 132 PM-ATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYT---S--GLNLLALLLAALTWALA-------- 197 (423)
T ss_pred cc-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecC---C--CCCHHHHHHHHHHHHHH--------
Confidence 11 233333333333232 357788899999999999999988776541 1 22223332322211111
Q ss_pred HHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCC-c----------------------
Q 003517 249 LSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGP-F---------------------- 305 (813)
Q Consensus 249 ~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~-~---------------------- 305 (813)
++.+|.. ++....++.+.+++.. ....-|+|+.++..+.|+++|..++ .
T Consensus 198 --~~ln~~~----v~~~~~Y~~~G~~lW~--~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (423)
T PRK14855 198 --LLAGRLG----VTSLKIYAVLGALLWF--FVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVGAR 269 (423)
T ss_pred --HHHHHcC----CccccHHHHHHHHHHH--HHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhhHH
Confidence 2223321 2233334444443333 3446899999999999999986311 1
Q ss_pred --------------hHHHHHHHHHHHHHhhHHHH-HHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 003517 306 --------------AGVLIEKIEDMVSGLFLPLY-FAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSC- 369 (813)
Q Consensus 306 --------------~~~l~~kl~~~~~~~~~plF-F~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~- 369 (813)
.+++++++.+.+..+.+|+| |...|..++-.. .. .....+++..++||.+|.++.++..
T Consensus 270 ~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~~----pv~lGI~~GLvvGK~lGI~~~s~lav 344 (423)
T PRK14855 270 LRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGG-LG----TVSLGVFLGLLLGKPLGVVGGAWLAV 344 (423)
T ss_pred HHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC-CC----cHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 24677788888888999999 889999885333 22 1233445566789999888877652
Q ss_pred ---------CCChHHHHHHHHHHhhhh-HHHHHHHHhhcc
Q 003517 370 ---------KVPLRESLALGFIMNTKG-LVELIVLNIGKD 399 (813)
Q Consensus 370 ---------~~~~re~~~lgl~l~~kG-~v~l~~~~~~~~ 399 (813)
+++|++-.-+|+ ++..| ++++.+.+.+++
T Consensus 345 kl~~a~lP~g~~w~~l~gv~~-LaGIGFTmSLFIa~LAF~ 383 (423)
T PRK14855 345 RLGLASLPRRVNWLHMLGAGL-LAGIGFTMSLFISNLAFA 383 (423)
T ss_pred HhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhCC
Confidence 567888888887 56666 777888888884
No 26
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.07 E-value=5.4e-08 Score=104.83 Aligned_cols=271 Identities=17% Similarity=0.245 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHH---hcchhh---HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHH
Q 003517 96 VLETLANIGLLFFLFLVGLELDIKSIL---RTGKKS---LGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGV 169 (813)
Q Consensus 96 ~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~ 169 (813)
..+.+.+--+.+|.|.+|+|+.-+.+. ++.|++ ..-++.|+++|.++-..+.. ......+|.. +.+
T Consensus 56 l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~~n~--~~~~~~GW~I-P~A----- 127 (383)
T PRK14854 56 LMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLSINH--DIKVINGWAI-PSA----- 127 (383)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHhhcc--CCcccCcccc-ccH-----
Confidence 345566666778999999999877764 233333 34566778888764333221 1110123322 111
Q ss_pred HHhhccHHHHHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003517 170 SLSITAFPVLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRPVL 249 (813)
Q Consensus 170 ~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~ 249 (813)
+=++|++-.-.+-..+ .+..+.-..++-+++||+.++++.++... +.....+.......+. +.+
T Consensus 128 --TDIAFAlgvLallG~r-vP~~lrvFLlaLAIvDDlgAI~VIAlFYt-----~~i~~~~L~~A~~~~~--~l~------ 191 (383)
T PRK14854 128 --TDIAFTLGILALLGTR-VPAKLKLLVITIAIFDDIAAIAIIAIFYT-----KSLSLLSLSLGTLFIL--AMI------ 191 (383)
T ss_pred --HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhhhHhheeeecC-----CCccHHHHHHHHHHHH--HHH------
Confidence 1122332222222223 68888889999999999999988776541 1222222222211111 111
Q ss_pred HHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCC----chHHHHHHHHHHHHHhhHHHH
Q 003517 250 SLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGP----FAGVLIEKIEDMVSGLFLPLY 325 (813)
Q Consensus 250 ~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~----~~~~l~~kl~~~~~~~~~plF 325 (813)
.+.|+.. .+....+..+.+++.. ....-|+|+.++..+.|+++|...+ -.+++++++++.+..+.+|+|
T Consensus 192 -~~nr~~~----v~~~~~Y~~~G~~lW~--~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlF 264 (383)
T PRK14854 192 -ICNRIFK----INRSSVYVVLGFFAWF--CTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFILPVF 264 (383)
T ss_pred -HHHHhcC----CceehHHHHHHHHHHH--HHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhhHHHH
Confidence 1222211 1222334444433333 3457899999999999999996321 136788899999999999999
Q ss_pred -HHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHhhhh-HHHHHH
Q 003517 326 -FAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSC----------KVPLRESLALGFIMNTKG-LVELIV 393 (813)
Q Consensus 326 -F~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~re~~~lgl~l~~kG-~v~l~~ 393 (813)
|...|..++-..+.. ..-.....+++..++||.+|.+..++.. +++|++-..+|+ ++..| ++++.+
T Consensus 265 A~aNAGV~l~~~~~~~-~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~-L~GIGFTmSLFI 342 (383)
T PRK14854 265 AFANAGISFSGISFSI-LFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISL-LCGIGFTMSLFI 342 (383)
T ss_pred HhhcCCeeeccCcHHh-hcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHH
Confidence 889999884211211 1112333455666789999888776652 467888888888 56666 778888
Q ss_pred HHhhcc
Q 003517 394 LNIGKD 399 (813)
Q Consensus 394 ~~~~~~ 399 (813)
.+.+.+
T Consensus 343 a~LAF~ 348 (383)
T PRK14854 343 GVLAFN 348 (383)
T ss_pred HHhhCC
Confidence 888884
No 27
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.06 E-value=4.4e-08 Score=105.85 Aligned_cols=269 Identities=22% Similarity=0.334 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHh---cchhh---HHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCChhHHHHHHH
Q 003517 96 VLETLANIGLLFFLFLVGLELDIKSILR---TGKKS---LGIALAGITLPFALGIGTSFVLRST-VLKGANQAPLLVFMG 168 (813)
Q Consensus 96 ~l~~l~~lgl~~llF~~Gle~d~~~l~~---~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~l~lg 168 (813)
..+.+.+.-+.+|.|.+|+|+.-+.+.. +.|++ ..-++.|+++|.++-..+.. +.. ...+|.. +.
T Consensus 59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy~~~n~--~~~~~~~GWaI-P~----- 130 (388)
T PRK09561 59 LLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIYLLFNY--ADPVTREGWAI-PA----- 130 (388)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHHhheec--CCCcccCcccc-cc-----
Confidence 4455666667789999999999887742 33333 34566777888654322111 100 0123322 11
Q ss_pred HHHhhccHHHHHHHHHHc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 003517 169 VSLSITAFPVLARILAEL-KLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRP 247 (813)
Q Consensus 169 ~~ls~Ts~~vv~~iL~el-~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~ 247 (813)
.|+.+....++.=+ +..+..+....++-+++||+.++++.++... +.....+..+....+.++
T Consensus 131 ----ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt-----~~i~~~~L~~a~~~~~~l------- 194 (388)
T PRK09561 131 ----ATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYT-----SDLSMVSLGVAAVAIAVL------- 194 (388)
T ss_pred ----HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC-----CCccHHHHHHHHHHHHHH-------
Confidence 22322223333222 2367888999999999999999988776541 122222222222211111
Q ss_pred HHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCC----chHHHHHHHHHHHHHhhHH
Q 003517 248 VLSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGP----FAGVLIEKIEDMVSGLFLP 323 (813)
Q Consensus 248 ~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~----~~~~l~~kl~~~~~~~~~p 323 (813)
++.+|.. .+....+..+.+++.. ....-|+|+.++..+.|+++|...+ -.+++++++++.+..+.+|
T Consensus 195 ---~~ln~~~----v~~~~~Y~~~G~~lW~--~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~IlP 265 (388)
T PRK09561 195 ---AVLNLCG----VRRTSVYILVGVVLWV--AVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFLILP 265 (388)
T ss_pred ---HHHHHcC----CccchHHHHHHHHHHH--HHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhheeHH
Confidence 2223321 2233344444444333 3346899999999999999996322 1367889999999999999
Q ss_pred HH-HHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHhhhh-HHHH
Q 003517 324 LY-FAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSC----------KVPLRESLALGFIMNTKG-LVEL 391 (813)
Q Consensus 324 lF-F~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~re~~~lgl~l~~kG-~v~l 391 (813)
+| |...|..++-..+.. ..-.....+++..++||.+|.+..++.. +++|++-.-+|+ ++..| ++++
T Consensus 266 lFAfaNAGV~l~~~~~~~-~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~-L~GIGFTmSL 343 (388)
T PRK09561 266 LFAFANAGVSLQGVTLDG-LTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGV-LCGIGFTMSI 343 (388)
T ss_pred HHHhhcCCeeeccCcHHh-hcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHH
Confidence 99 888998883211211 1112233455666789999888777652 457888888887 46666 6777
Q ss_pred HHHHhhcc
Q 003517 392 IVLNIGKD 399 (813)
Q Consensus 392 ~~~~~~~~ 399 (813)
.+.+.+++
T Consensus 344 FIa~LAF~ 351 (388)
T PRK09561 344 FIASLAFG 351 (388)
T ss_pred HHHHHhcC
Confidence 78888874
No 28
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.85 E-value=7.2e-07 Score=92.58 Aligned_cols=256 Identities=20% Similarity=0.335 Sum_probs=156.8
Q ss_pred HHHHHHHHhhccChhHHH---hcchhhH---HHHHHHHHHHHHHHHHHHHHHHHhh---hcCCChhHHHHHHHHHHhhcc
Q 003517 105 LLFFLFLVGLELDIKSIL---RTGKKSL---GIALAGITLPFALGIGTSFVLRSTV---LKGANQAPLLVFMGVSLSITA 175 (813)
Q Consensus 105 l~~llF~~Gle~d~~~l~---~~~~~~~---~ia~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~l~lg~~ls~Ts 175 (813)
..+|.+.+|+|+..+.+. ++++++. .-++.|++.|.++- ..+...- ..+|.. -+.|+
T Consensus 71 MAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAliy----~~~n~~~p~~~~GWaI----------P~ATD 136 (390)
T COG3004 71 MAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALIY----LALNAGDPATLEGWAI----------PMATD 136 (390)
T ss_pred HHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhHh----heeecCChhhhcCcCc----------ccHHH
Confidence 455778899999988875 3444432 34556666665432 1221111 112322 12334
Q ss_pred HHHHHHHHHHc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003517 176 FPVLARILAEL-KLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRPVLSLMAR 254 (813)
Q Consensus 176 ~~vv~~iL~el-~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~ 254 (813)
.+....++.=+ +..++.+.-..++-+++||+-++++.++... +..+..+...+.+... ++ . .+.+
T Consensus 137 iAFAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt-----~~Ls~~al~~a~~~i~-vL-----~---~lN~ 202 (390)
T COG3004 137 IAFALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT-----TDLSMAALGIAALAIA-VL-----A---VLNR 202 (390)
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc-----CCccHHHHHHHHHHHH-HH-----H---HHHH
Confidence 33334444333 3468899999999999999999888776542 1222222222221111 11 1 1222
Q ss_pred hCCCCCCchhHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCC----CchHHHHHHHHHHHHHhhHHHH-HHHh
Q 003517 255 RSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEG----PFAGVLIEKIEDMVSGLFLPLY-FAAS 329 (813)
Q Consensus 255 ~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~----~~~~~l~~kl~~~~~~~~~plF-F~~~ 329 (813)
.. ++....+++...++..+.+ .-|+|..++..+.|+++|-.. +.-+++++.+.+.+..+.+|+| |...
T Consensus 203 ~~-----v~~l~~Y~~~gviLW~~vl--kSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlPlFaFaNA 275 (390)
T COG3004 203 LG-----VRRLSPYLLVGVILWIAVL--KSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILPLFAFANA 275 (390)
T ss_pred hC-----chhhhHHHHHHHHHHHHHH--HhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHHHHHHccC
Confidence 21 1222234455555555443 679999999999999999433 2346788888899899999999 9999
Q ss_pred ccccc---hhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHhhhh-HHHHHHHH
Q 003517 330 GLKTN---VATIRGATSWGLLLLVILNACFGKIVGTVVVAWSC----------KVPLRESLALGFIMNTKG-LVELIVLN 395 (813)
Q Consensus 330 G~~~d---l~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~re~~~lgl~l~~kG-~v~l~~~~ 395 (813)
|.+++ ...+.+ .+...+++..++||.+|.+..++.. +.+|++-...++ ++..| .+++.+..
T Consensus 276 Gvsl~g~~~~~l~s----~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~i-LcGIGFTMSlFI~~ 350 (390)
T COG3004 276 GVSLQGVSLSGLTS----PLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSI-LCGIGFTMSLFIAS 350 (390)
T ss_pred Cccccccccccccc----chHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHH-HHhhhHHHHHHHHH
Confidence 99887 444443 2344556667889999988887652 557888777777 45566 67777777
Q ss_pred hhccc
Q 003517 396 IGKDR 400 (813)
Q Consensus 396 ~~~~~ 400 (813)
.+++.
T Consensus 351 LAf~~ 355 (390)
T COG3004 351 LAFGS 355 (390)
T ss_pred HhcCC
Confidence 77765
No 29
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.78 E-value=3.2e-08 Score=106.93 Aligned_cols=272 Identities=21% Similarity=0.383 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHHH---hcchhh---HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHH
Q 003517 95 TVLETLANIGLLFFLFLVGLELDIKSIL---RTGKKS---LGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMG 168 (813)
Q Consensus 95 ~~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg 168 (813)
...+.+.+--+.+|.|.+|+|+.-+.+. ++.||+ ..-++.|+++|.++-.. +.. +.+ ...--+|
T Consensus 54 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalIyl~----~n~----~~~--~~~~GW~ 123 (378)
T PF06965_consen 54 SLHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALIYLA----FNA----GGP--EAAHGWA 123 (378)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHGG----G------SST--THHHHTS
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHHHhe----eec----CCC--CcCceEE
Confidence 3455666777788999999999887764 233433 34456677777653221 111 111 0111222
Q ss_pred HHHhhccHHHHHHHHHHc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 003517 169 VSLSITAFPVLARILAEL-KLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRP 247 (813)
Q Consensus 169 ~~ls~Ts~~vv~~iL~el-~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~ 247 (813)
+- ..|+.+....++.=+ +..+..+....++-+++||+.++++.++... +.....+.......+ .+.
T Consensus 124 IP-~ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt-----~~i~~~~L~~a~~~~-~~l------ 190 (378)
T PF06965_consen 124 IP-MATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT-----DGISLLWLLLAAAAL-LLL------ 190 (378)
T ss_dssp SS-S---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS----------HHHHHHHHHHH-HHH------
T ss_pred ec-ccccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC-----CCCCHHHHHHHHHHH-HHH------
Confidence 11 233444444444333 2357788899999999999999988876542 122222222222111 111
Q ss_pred HHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCch--------HHHHHHHHHHHHH
Q 003517 248 VLSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFA--------GVLIEKIEDMVSG 319 (813)
Q Consensus 248 ~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~~--------~~l~~kl~~~~~~ 319 (813)
|+.+|.. .+....+..+.+++ -+....-|+|+.++..+.|+++|..++.+ +++++++++.++.
T Consensus 191 ---~~l~r~~----v~~~~~Y~~~G~~l--W~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~~ 261 (378)
T PF06965_consen 191 ---FVLNRLG----VRSLWPYLLLGILL--WYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVAF 261 (378)
T ss_dssp ---HHHHHTT-------THHHHHHHHHH--HHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHHH
T ss_pred ---HHHHHCC----CceehHHHHHHHHH--HHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhhh
Confidence 2223321 12223333333322 22334679999999999999999754442 4888899999989
Q ss_pred hhHHHH-HHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHhhhh-
Q 003517 320 LFLPLY-FAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSC----------KVPLRESLALGFIMNTKG- 387 (813)
Q Consensus 320 ~~~plF-F~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~re~~~lgl~l~~kG- 387 (813)
+.+|+| |...|..++-..+... .-.....+++..++||.+|.+..++.. +++|++-...|+ ++..|
T Consensus 262 ~IlPlFAlaNAGV~l~~~~~~~~-~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~-LaGIGF 339 (378)
T PF06965_consen 262 VILPLFALANAGVSLSGSSLGDL-TSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGL-LAGIGF 339 (378)
T ss_dssp THHHHHHHHHS----SSS---TH-HHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHH-HTT--H
T ss_pred hhHHhHhheeCceEEecCchHhh-hChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHH
Confidence 999999 9999999886554321 222233445566789999987776542 346677666776 46666
Q ss_pred HHHHHHHHhhccc
Q 003517 388 LVELIVLNIGKDR 400 (813)
Q Consensus 388 ~v~l~~~~~~~~~ 400 (813)
++++.+.+.+++.
T Consensus 340 TmSLFIa~LAF~~ 352 (378)
T PF06965_consen 340 TMSLFIAGLAFDD 352 (378)
T ss_dssp HHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCC
Confidence 6788888888876
No 30
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.65 E-value=1.5e-07 Score=90.54 Aligned_cols=138 Identities=12% Similarity=0.198 Sum_probs=87.5
Q ss_pred eEEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEeecCCCCCcccCCCCCCcccccccCCCCccccHHHHHHHHHhhhcc
Q 003517 625 SVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSIASK 704 (813)
Q Consensus 625 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 704 (813)
+|+++++|++..+.|+++|.++++.++.++++++++++...... . .......-...++.++.-++.+++++...
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 74 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPS--S--SGKLEVASAYKQEEDKEAKELLLPYRCFC-- 74 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCC--C--ccchHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 48999999999999999999999999999999999865321110 0 00000000000111223345666665443
Q ss_pred CCCCeEEEEEEec--ChHHHHHHHhccCC--CcEEEEccCCCCCCCCCCccccccCccc-cchhhhhcCCCCCc--ccEE
Q 003517 705 NQESITLEERLVE--SSQEIAGVLKSMNK--CNLFLVGRMAPTAPLMDTKSAEYCSELG-PVGCFLASSEFSTT--ASVV 777 (813)
Q Consensus 705 ~~~~v~y~e~~v~--~~~e~~~~i~~~~~--~DLviVGr~~~~~gl~~w~~~e~~~eLG-~igd~las~d~~~~--~SvL 777 (813)
....+.++..++. +..++ +++..++ .||+|+|+|+ ..|+..+ -+| -+.+.++.. .+ ++||
T Consensus 75 ~~~~~~~~~~~~~g~~~~~~--I~~~a~~~~~dlIV~Gs~g-~~~l~~~-------~~gssva~~Vi~~---a~~~c~Vl 141 (146)
T cd01989 75 SRKGVQCEDVVLEDDDVAKA--IVEYVADHGITKLVMGASS-DNHFSMK-------FKKSDVASSVLKE---APDFCTVY 141 (146)
T ss_pred hhcCCeEEEEEEeCCcHHHH--HHHHHHHcCCCEEEEeccC-CCceeec-------ccCCchhHHHHhc---CCCCceEE
Confidence 2234555555554 33443 3444444 8999999998 7777654 366 688999865 55 8999
Q ss_pred EEee
Q 003517 778 VLQQ 781 (813)
Q Consensus 778 vvqq 781 (813)
|||.
T Consensus 142 vv~~ 145 (146)
T cd01989 142 VVSK 145 (146)
T ss_pred EEeC
Confidence 9984
No 31
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.64 E-value=4.3e-07 Score=87.24 Aligned_cols=140 Identities=8% Similarity=0.172 Sum_probs=87.4
Q ss_pred eeEEEeecCCChhhHHHHHHhhccCCCCCceEEEEEeeeccCcchHHH----HHHHHhhCCCCCCCCCCCcchHHHHHHH
Q 003517 454 RILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIA----MVQKARNNGLPFWDKKRDDRDYIVIAFE 529 (813)
Q Consensus 454 riLv~v~~~~~v~~li~Ll~~~~~~~~s~~~v~~LhLvel~~r~~~~l----~~~~~~~~~~~~~~~~~~~~~~i~~af~ 529 (813)
+||+|+++.++...+++.+..+... ....++++|+++......... ......++. ....++.++.+.
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~--~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~ 71 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLAT--KGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEE-------DKEAKELLLPYR 71 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccC--CCCcEEEEEeccCcccCCCCccchHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 4899999999999999888877543 567899999987532211000 000000000 012233333332
Q ss_pred HhhhcCceEEEeeEeeccCCChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccCC--CceEEEe
Q 003517 530 AYQQLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAP--CSVGIFV 607 (813)
Q Consensus 530 ~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~ap--CsVgIlv 607 (813)
...+..++.++...... .+..+.|++.|++.++|+|+||-|++......+.++ .+-++|+++|| |||.| |
T Consensus 72 ~~~~~~~~~~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gs-----sva~~Vi~~a~~~c~Vlv-v 143 (146)
T cd01989 72 CFCSRKGVQCEDVVLED--DDVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKS-----DVASSVLKEAPDFCTVYV-V 143 (146)
T ss_pred HHHhhcCCeEEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCCCceeecccCC-----chhHHHHhcCCCCceEEE-E
Confidence 22222445655544332 478999999999999999999999887655443321 24669999999 99955 4
Q ss_pred cCC
Q 003517 608 DRG 610 (813)
Q Consensus 608 drg 610 (813)
.+|
T Consensus 144 ~~~ 146 (146)
T cd01989 144 SKG 146 (146)
T ss_pred eCc
Confidence 443
No 32
>PRK15456 universal stress protein UspG; Provisional
Probab=98.55 E-value=3.8e-07 Score=87.38 Aligned_cols=134 Identities=9% Similarity=0.089 Sum_probs=82.1
Q ss_pred ceeEEEeecCC--ChhhHHHHHHhhccCCCCCceEEEEEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHHHHHHHH
Q 003517 453 FRILACFHSTR--NIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEA 530 (813)
Q Consensus 453 lriLv~v~~~~--~v~~li~Ll~~~~~~~~s~~~v~~LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 530 (813)
.|||+|+++.+ +...+++.+..++.. . ..++++|+++-..... . .........+ . ....++..+.++.
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~la~~--~-~~l~llhv~~~~~~~~-~---~~~~~~~~~~-~--~~~~~~~~~~l~~ 72 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEFLAQD--D-GVIHLLHVLPGSASLS-L---HRFAADVRRF-E--EHLQHEAEERLQT 72 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHHHHhc--C-CeEEEEEEecCccccc-c---cccccchhhH-H--HHHHHHHHHHHHH
Confidence 37999999984 778888877777532 3 3799999987432110 0 0000000000 0 0111222222333
Q ss_pred hhh---cCceEEEeeEeeccCCChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccCCCceEEE
Q 003517 531 YQQ---LSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIF 606 (813)
Q Consensus 531 ~~~---~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~apCsVgIl 606 (813)
+.+ ..++.++..+.. .+..++|++.|+++++||||||.|++. ....+.|+. -++|++++||||.|.
T Consensus 73 ~~~~~~~~~~~v~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~llGS~------a~~v~~~a~~pVLvV 141 (142)
T PRK15456 73 MVSHFTIDPSRIKQHVRF---GSVRDEVNELAEELGADVVVIGSRNPS-ISTHLLGSN------ASSVIRHANLPVLVV 141 (142)
T ss_pred HHHHhCCCCcceEEEEcC---CChHHHHHHHHhhcCCCEEEEcCCCCC-ccceecCcc------HHHHHHcCCCCEEEe
Confidence 322 234666655544 477899999999999999999999864 444444444 569999999999764
No 33
>PRK15005 universal stress protein F; Provisional
Probab=98.51 E-value=2.8e-07 Score=88.32 Aligned_cols=135 Identities=17% Similarity=0.186 Sum_probs=79.4
Q ss_pred eeEEEeecCCC--hhhHHHHHHhhccCCCCCceEEEEEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHHHHHHHHh
Q 003517 454 RILACFHSTRN--IPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAY 531 (813)
Q Consensus 454 riLv~v~~~~~--v~~li~Ll~~~~~~~~s~~~v~~LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 531 (813)
+||+|+++.++ ...+++.+..++. ..+..++++|+++............ ....+... ...++..+.++++
T Consensus 4 ~ILv~~D~s~~~~~~~a~~~a~~la~--~~~~~l~ll~v~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~l~~~ 75 (144)
T PRK15005 4 TILVPIDISDSELTQRVISHVEAEAK--IDDAEVHFLTVIPSLPYYASLGLAY---SAELPAMD---DLKAEAKSQLEEI 75 (144)
T ss_pred cEEEecCCCchhHHHHHHHHHHHHHh--ccCCeEEEEEEEccCcccccccccc---cccchHHH---HHHHHHHHHHHHH
Confidence 69999999987 3566766666553 3567899999997532211100000 00000000 1111222223333
Q ss_pred hh---cCceEEEeeEeeccCCChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccCCCceEEE
Q 003517 532 QQ---LSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIF 606 (813)
Q Consensus 532 ~~---~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~apCsVgIl 606 (813)
.+ ..+++++..+.. .+-.+.|++.|+++++|+|+||.|+ ....+.+.|+ +..+|++++||||.|.
T Consensus 76 ~~~~~~~~~~~~~~v~~---G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~~llGS------~a~~vl~~a~cpVlvV 143 (144)
T PRK15005 76 IKKFKLPTDRVHVHVEE---GSPKDRILELAKKIPADMIIIASHR-PDITTYLLGS------NAAAVVRHAECSVLVV 143 (144)
T ss_pred HHHhCCCCCceEEEEeC---CCHHHHHHHHHHHcCCCEEEEeCCC-CCchheeecc------hHHHHHHhCCCCEEEe
Confidence 22 133455544433 4678999999999999999999884 3444444444 3569999999999764
No 34
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.50 E-value=4.5e-07 Score=85.12 Aligned_cols=133 Identities=17% Similarity=0.233 Sum_probs=86.7
Q ss_pred ceeEEEeecCCChhhHHHHHHhhccCCCCCceEEEEEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHHHHHHH---
Q 003517 453 FRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFE--- 529 (813)
Q Consensus 453 lriLv~v~~~~~v~~li~Ll~~~~~~~~s~~~v~~LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~af~--- 529 (813)
-|||+|+++.++...+++.+..+... ....++++|+++................. ..++......
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~--~~~~i~~l~v~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 70 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKR--SGAEITLLHVIPPPPQYSFSAAEDEESEE----------EAEEEEQARQAEA 70 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHH--HTCEEEEEEEEESCHCHHHHHHHHHHHHH----------HHHHHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHh--hCCeEEEEEeecccccccccccccccccc----------ccchhhhhhhHHH
Confidence 37999999999999998888777643 67889999999977655443211111000 0011110000
Q ss_pred Hh-hhcCceEEEeeEeeccCCChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccCCCceEEE
Q 003517 530 AY-QQLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIF 606 (813)
Q Consensus 530 ~~-~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~apCsVgIl 606 (813)
.. ............. + .+..+.|++.+++.++|+||+|.|++....+.+ +..+.+++++++||||.|+
T Consensus 71 ~~~~~~~~~~~~~~~~-~--~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~------~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 71 EEAEAEGGIVIEVVIE-S--GDVADAIIEFAEEHNADLIVMGSRGRSGLERLL------FGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp HHHHHHTTSEEEEEEE-E--SSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSS------SHHHHHHHHHHTSSEEEEE
T ss_pred HHHhhhccceeEEEEE-e--eccchhhhhccccccceeEEEeccCCCCccCCC------cCCHHHHHHHcCCCCEEEe
Confidence 11 1112233322222 2 588999999999999999999999866555443 4556789999999999765
No 35
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.49 E-value=5.8e-07 Score=83.74 Aligned_cols=122 Identities=18% Similarity=0.162 Sum_probs=85.2
Q ss_pred eeEEEeecCCChhhHHHHHHhhccCCCCCceEEEEEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHHHHHHHHhhh
Q 003517 454 RILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQ 533 (813)
Q Consensus 454 riLv~v~~~~~v~~li~Ll~~~~~~~~s~~~v~~LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 533 (813)
|||+|+++.+....+++.+..++.. .+..++++|+++-... . .. ...++.++.+++..+
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~--~~~~l~ll~v~~~~~~--~--------------~~---~~~~~~l~~~~~~~~ 59 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADR--LKAPWYVVYVETPRLN--R--------------LS---EAERRRLAEALRLAE 59 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHH--hCCCEEEEEEecCccc--c--------------CC---HHHHHHHHHHHHHHH
Confidence 6999999999999999998887644 5778999999863211 0 00 122344444444443
Q ss_pred cCceEEEeeEeeccCCChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccC-CCceEEE
Q 003517 534 LSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHA-PCSVGIF 606 (813)
Q Consensus 534 ~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~a-pCsVgIl 606 (813)
..++.. .+..+ .+..+.|++.|++.++|+|+||+|++......+-+ ++.++|+++| ||+|.|.
T Consensus 60 ~~~~~~--~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~G------s~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 60 ELGAEV--VTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRSRWRELFRG------SLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred HcCCEE--EEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCchHHHHhcc------cHHHHHHHhCCCCeEEEe
Confidence 333333 23333 56889999999999999999999988766544433 3467999999 9998764
No 36
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=98.45 E-value=1.4e-06 Score=81.78 Aligned_cols=130 Identities=13% Similarity=0.131 Sum_probs=81.7
Q ss_pred eEEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEeecCCCCCcccCCCCCCcccccccCCCCccccHHHHHHHHHhhhcc
Q 003517 625 SVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSIASK 704 (813)
Q Consensus 625 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 704 (813)
||+++..|.++++.++++|.+||+.++.+++++|+.+....... . ..+.+.+..++.++.++...
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~--~-----------~~~~~~~~~~~~~~~~~~~~-- 65 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSP--S-----------QLEVNVQRARKLLRQAERIA-- 65 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCc--c-----------hhHHHHHHHHHHHHHHHHHh--
Confidence 58999999999999999999999999999999999865321110 0 01111222334555554432
Q ss_pred CCCCeEEEEEEe--cChHHHHHHHhccCCCcEEEEccCCCCCCCCCCccccccCccccchhhhhcCCCCCcccEEEEe
Q 003517 705 NQESITLEERLV--ESSQEIAGVLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVLQ 780 (813)
Q Consensus 705 ~~~~v~y~e~~v--~~~~e~~~~i~~~~~~DLviVGr~~~~~gl~~w~~~e~~~eLG~igd~las~d~~~~~SvLvvq 780 (813)
....+.....+. .+..+.+....+-.++||+|+|.++ .+++.+| -+|...+.+... ++++||||+
T Consensus 66 ~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~-~~~~~~~-------~lGs~~~~v~~~---~~~pvlvv~ 132 (132)
T cd01988 66 ASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHG-STSLRDR-------LFGGVIDQVLES---APCDVAVVK 132 (132)
T ss_pred hhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCC-CCCccce-------ecCchHHHHHhc---CCCCEEEeC
Confidence 111223333332 2333333222222239999999998 4554443 488888888865 778999985
No 37
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=98.42 E-value=1.2e-06 Score=83.98 Aligned_cols=134 Identities=8% Similarity=0.003 Sum_probs=80.3
Q ss_pred ceeEEEeecCCChhhHHHHHHhhccCCCCCceEEEEEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHHHHHHHHhh
Q 003517 453 FRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQ 532 (813)
Q Consensus 453 lriLv~v~~~~~v~~li~Ll~~~~~~~~s~~~v~~LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~ 532 (813)
-|||+|+++.++....++.+..++.. ....++++|+.+-........ . ........ ....++..+.++.+.
T Consensus 4 ~~ILvavD~S~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~----~-~~~~~~~~--~~~~~~~~~~l~~~~ 74 (144)
T PRK15118 4 KHILIAVDLSPESKVLVEKAVSMARP--YNAKVSLIHVDVNYSDLYTGL----I-DVNLGDMQ--KRISEETHHALTELS 74 (144)
T ss_pred eEEEEEccCChhHHHHHHHHHHHHHh--hCCEEEEEEEccChhhhhhhh----h-hcchHHHH--HHHHHHHHHHHHHHH
Confidence 37999999999988888877776533 466799999843111100000 0 00000000 011233334444544
Q ss_pred hcCceEEEeeEeeccCCChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccCCCceEEE
Q 003517 533 QLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIF 606 (813)
Q Consensus 533 ~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~apCsVgIl 606 (813)
+..++.+..... ...+.++.|++.|++.++||||+|.|+.. . +. +.++-.+|+++|||||.|.
T Consensus 75 ~~~~~~~~~~~~--~~G~p~~~I~~~a~~~~~DLIV~Gs~~~~-~-~~-------lgSva~~v~~~a~~pVLvv 137 (144)
T PRK15118 75 TNAGYPITETLS--GSGDLGQVLVDAIKKYDMDLVVCGHHQDF-W-SK-------LMSSARQLINTVHVDMLIV 137 (144)
T ss_pred HhCCCCceEEEE--EecCHHHHHHHHHHHhCCCEEEEeCcccH-H-HH-------HHHHHHHHHhhCCCCEEEe
Confidence 433444322221 22467899999999999999999999531 1 11 2356779999999999775
No 38
>PRK09982 universal stress protein UspD; Provisional
Probab=98.40 E-value=6.6e-07 Score=85.80 Aligned_cols=132 Identities=8% Similarity=0.015 Sum_probs=79.2
Q ss_pred eeEEEeecCCChhhHHHHHHhhccCCCCCceEEEEEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHHHHHHHHhhh
Q 003517 454 RILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQ 533 (813)
Q Consensus 454 riLv~v~~~~~v~~li~Ll~~~~~~~~s~~~v~~LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 533 (813)
+||+|+++.++....++-+..++. +.+..++++|+++......+.. .....+ ... ....++..+.++.+.+
T Consensus 5 ~ILvavD~S~~s~~al~~A~~lA~--~~~a~l~llhV~~~~~~~~~~~--~~~~~~--~~~---~~~~~~~~~~l~~~~~ 75 (142)
T PRK09982 5 HIGVAISGNEEDALLVNKALELAR--HNDAHLTLIHIDDGLSELYPGI--YFPATE--DIL---QLLKNKSDNKLYKLTK 75 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHHH--HhCCeEEEEEEccCcchhchhh--hccchH--HHH---HHHHHHHHHHHHHHHH
Confidence 699999999999988887777763 3677899999987432111000 000000 000 0111112222333322
Q ss_pred c-CceEEEeeEeeccCCChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccCCCceEEE
Q 003517 534 L-SSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIF 606 (813)
Q Consensus 534 ~-~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~apCsVgIl 606 (813)
. ....++..+.. .+..+.||+.|++.++|+|+||-| +...... + .+-++|+++|+|||.|.
T Consensus 76 ~~~~~~~~~~v~~---G~p~~~I~~~A~~~~aDLIVmG~~-~~~~~~~-------~-~va~~V~~~s~~pVLvv 137 (142)
T PRK09982 76 NIQWPKTKLRIER---GEMPETLLEIMQKEQCDLLVCGHH-HSFINRL-------M-PAYRGMINKMSADLLIV 137 (142)
T ss_pred hcCCCcceEEEEe---cCHHHHHHHHHHHcCCCEEEEeCC-hhHHHHH-------H-HHHHHHHhcCCCCEEEe
Confidence 2 22233333333 478999999999999999999965 3222211 2 26779999999999775
No 39
>PRK15005 universal stress protein F; Provisional
Probab=98.34 E-value=4.9e-06 Score=79.64 Aligned_cols=138 Identities=11% Similarity=0.122 Sum_probs=83.0
Q ss_pred eeEEEecCCCcCh--HHHHHHHHHHhcCCCeEEEEEEeecCCCCCcccCCCCCCcccccccCCCCccccHHHHHHHHHhh
Q 003517 624 YSVVVPFFGGLDD--CEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSI 701 (813)
Q Consensus 624 ~~i~v~f~GG~dd--reAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 701 (813)
++|+++.+|++++ +.|+++|.++|+..+.++++++++++.......... ......+.+..++.-++.++++.++
T Consensus 3 ~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (144)
T PRK15005 3 RTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLA----YSAELPAMDDLKAEAKSQLEEIIKK 78 (144)
T ss_pred ccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCccccccccc----ccccchHHHHHHHHHHHHHHHHHHH
Confidence 5899999999984 799999999999999999999999642211000000 0000000001112222455555554
Q ss_pred hccCCCCeEEEEEEecChHHHHHHHhccC--CCcEEEEccCCCCCCCCCCccccccCccccchhhhhcCCCCCcccEEEE
Q 003517 702 ASKNQESITLEERLVESSQEIAGVLKSMN--KCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVL 779 (813)
Q Consensus 702 ~~~~~~~v~y~e~~v~~~~e~~~~i~~~~--~~DLviVGr~~~~~gl~~w~~~e~~~eLG~igd~las~d~~~~~SvLvv 779 (813)
. ....+.++.. +..|.....+++..+ ++||+|+|+++ .|+.+| =+|-..+-+... ++++||||
T Consensus 79 ~--~~~~~~~~~~-v~~G~p~~~I~~~a~~~~~DLIV~Gs~~--~~~~~~-------llGS~a~~vl~~---a~cpVlvV 143 (144)
T PRK15005 79 F--KLPTDRVHVH-VEEGSPKDRILELAKKIPADMIIIASHR--PDITTY-------LLGSNAAAVVRH---AECSVLVV 143 (144)
T ss_pred h--CCCCCceEEE-EeCCCHHHHHHHHHHHcCCCEEEEeCCC--CCchhe-------eecchHHHHHHh---CCCCEEEe
Confidence 3 2222333333 333333333444443 39999999876 566655 378888998876 78899998
Q ss_pred e
Q 003517 780 Q 780 (813)
Q Consensus 780 q 780 (813)
.
T Consensus 144 r 144 (144)
T PRK15005 144 R 144 (144)
T ss_pred C
Confidence 4
No 40
>PRK09982 universal stress protein UspD; Provisional
Probab=98.33 E-value=1.4e-06 Score=83.47 Aligned_cols=135 Identities=10% Similarity=0.064 Sum_probs=80.4
Q ss_pred ceeEEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEeecCCCCCcccCCCCCCcccccccC-CCCccccHHHHHHHHHhh
Q 003517 623 SYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLR-GDNDQVGDDAIISDFKSI 701 (813)
Q Consensus 623 ~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~l~~~~~~ 701 (813)
.++|+++.+|+++.+.|+++|.++|+.+++++++++++++...... . .......+ .+..++.-++.+++.+.+
T Consensus 3 ~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~l~~~~~~ 76 (142)
T PRK09982 3 YKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYP--G----IYFPATEDILQLLKNKSDNKLYKLTKN 76 (142)
T ss_pred ceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhch--h----hhccchHHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999999854221100 0 00000000 001112222445555544
Q ss_pred hccCCCCeEEEEEEecChHHHHHHHhccCCCcEEEEccCCCCCCCCCCccccccCccccchhhhhcCCCCCcccEEEEe
Q 003517 702 ASKNQESITLEERLVESSQEIAGVLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVLQ 780 (813)
Q Consensus 702 ~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~~DLviVGr~~~~~gl~~w~~~e~~~eLG~igd~las~d~~~~~SvLvvq 780 (813)
. ....+.+ .....+..+++....+-.++||+|+|+|+ +|+.+| +| +.+-.... ++++||||.
T Consensus 77 ~--~~~~~~~-~v~~G~p~~~I~~~A~~~~aDLIVmG~~~--~~~~~~--------~~-va~~V~~~---s~~pVLvv~ 138 (142)
T PRK09982 77 I--QWPKTKL-RIERGEMPETLLEIMQKEQCDLLVCGHHH--SFINRL--------MP-AYRGMINK---MSADLLIVP 138 (142)
T ss_pred c--CCCcceE-EEEecCHHHHHHHHHHHcCCCEEEEeCCh--hHHHHH--------HH-HHHHHHhc---CCCCEEEec
Confidence 3 1122221 22234455544433333349999999754 777776 45 55555544 789999985
No 41
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.30 E-value=2.1e-06 Score=80.54 Aligned_cols=131 Identities=13% Similarity=0.187 Sum_probs=87.2
Q ss_pred eeEEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEeecCCCCCcccCCCCCCcccccccCCCCccccHHHHHHHHH----
Q 003517 624 YSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFK---- 699 (813)
Q Consensus 624 ~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~---- 699 (813)
+||++++.|+++++.|+++|.++|++++.+++++++.+....... ........+........
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 68 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSF--------------SAAEDEESEEEAEEEEQARQA 68 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHH--------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeecccccccc--------------ccccccccccccchhhhhhhH
Confidence 689999999999999999999999999999999999975432210 00000000000000000
Q ss_pred ---hhhccCCCCeEEEEEEecChHHHHHHHhccCCCcEEEEccCCCCCCCCCCccccccCccccchhhhhcCCCCCcccE
Q 003517 700 ---SIASKNQESITLEERLVESSQEIAGVLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASV 776 (813)
Q Consensus 700 ---~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~~DLviVGr~~~~~gl~~w~~~e~~~eLG~igd~las~d~~~~~Sv 776 (813)
... .......+......+..+.+....+..++||+|+|+++ ..++.+| -+|.+.+-++.. ++++|
T Consensus 69 ~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~-~~~~~~~-------~~gs~~~~l~~~---~~~pV 136 (140)
T PF00582_consen 69 EAEEAE-AEGGIVIEVVIESGDVADAIIEFAEEHNADLIVMGSRG-RSGLERL-------LFGSVAEKLLRH---APCPV 136 (140)
T ss_dssp HHHHHH-HHTTSEEEEEEEESSHHHHHHHHHHHTTCSEEEEESSS-TTSTTTS-------SSHHHHHHHHHH---TSSEE
T ss_pred HHHHHh-hhccceeEEEEEeeccchhhhhccccccceeEEEeccC-CCCccCC-------CcCCHHHHHHHc---CCCCE
Confidence 000 12234555666667776666555554559999999998 6666665 388899999975 77899
Q ss_pred EEEe
Q 003517 777 VVLQ 780 (813)
Q Consensus 777 Lvvq 780 (813)
|||.
T Consensus 137 lvv~ 140 (140)
T PF00582_consen 137 LVVP 140 (140)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9983
No 42
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.29 E-value=6.7e-06 Score=76.18 Aligned_cols=129 Identities=20% Similarity=0.216 Sum_probs=86.2
Q ss_pred eeEEEeecCCChhhHHHHHHhhccCCCCCceEEEEEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHHHHHHHHhhh
Q 003517 454 RILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQQ 533 (813)
Q Consensus 454 riLv~v~~~~~v~~li~Ll~~~~~~~~s~~~v~~LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 533 (813)
+||+|+++++....+++.+..+... .+..++++|+.+-.+........+.. ...++.++.+.....
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~--~~~~i~~l~v~~~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~~ 66 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARR--LGAELVLLHVVDPPPSSAAELAELLE------------EEARALLEALREALA 66 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEecCCCCcchhHHHHHH------------HHHHHHHHHHHHHHh
Confidence 5899999999999999998888754 57889999998755433221000000 112333333333322
Q ss_pred cCceEEEeeEeeccCCChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccCCCceEE
Q 003517 534 LSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGI 605 (813)
Q Consensus 534 ~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~apCsVgI 605 (813)
..+++++...... +..++|++.+++.++|++++|++++....+.+.+ ..-+++++++||+|.+
T Consensus 67 ~~~~~~~~~~~~~---~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~------~~~~~ll~~~~~pvli 129 (130)
T cd00293 67 EAGVKVETVVLEG---DPAEAILEAAEELGADLIVMGSRGRSGLRRLLLG------SVAERVLRHAPCPVLV 129 (130)
T ss_pred cCCCceEEEEecC---CCHHHHHHHHHHcCCCEEEEcCCCCCccceeeec------cHHHHHHhCCCCCEEe
Confidence 3456666554443 2389999999999999999999987654433333 3366999999999865
No 43
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.20 E-value=8.4e-06 Score=75.88 Aligned_cols=123 Identities=12% Similarity=0.090 Sum_probs=79.8
Q ss_pred eEEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEeecCCCCCcccCCCCCCcccccccCCCCccccHHHHHHHHHhhhcc
Q 003517 625 SVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSIASK 704 (813)
Q Consensus 625 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 704 (813)
||++++.|++.+++|+++|.++|++.+.+++++++.++.... ..+..++.++++++.. .
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~--------------------~~~~~~~~l~~~~~~~-~ 59 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNR--------------------LSEAERRRLAEALRLA-E 59 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCcccc--------------------CCHHHHHHHHHHHHHH-H
Confidence 589999999999999999999999999999999998643211 0111234455555443 1
Q ss_pred CCCCeEEEEEEecChHHHHHHHhccCCCcEEEEccCCCCCCCCCCccccccCccccchhhhhcCCCCCcccEEEE
Q 003517 705 NQESITLEERLVESSQEIAGVLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVL 779 (813)
Q Consensus 705 ~~~~v~y~e~~v~~~~e~~~~i~~~~~~DLviVGr~~~~~gl~~w~~~e~~~eLG~igd~las~d~~~~~SvLvv 779 (813)
. -.+.+....-.+..+.+....+-.++|++|+|.++ .+++.++ -+|-..+-++..- .+.+|||+
T Consensus 60 ~-~~~~~~~~~~~~~~~~I~~~~~~~~~dllviG~~~-~~~~~~~-------~~Gs~~~~v~~~a--~~~~v~v~ 123 (124)
T cd01987 60 E-LGAEVVTLPGDDVAEAIVEFAREHNVTQIVVGKSR-RSRWREL-------FRGSLVDRLLRRA--GNIDVHIV 123 (124)
T ss_pred H-cCCEEEEEeCCcHHHHHHHHHHHcCCCEEEeCCCC-CchHHHH-------hcccHHHHHHHhC--CCCeEEEe
Confidence 1 12333322223333333222222338999999998 5566554 4788888888652 37789886
No 44
>PRK10116 universal stress protein UspC; Provisional
Probab=98.19 E-value=8.1e-06 Score=77.94 Aligned_cols=134 Identities=14% Similarity=0.085 Sum_probs=83.0
Q ss_pred ceeEEEeecCCChhhHHHHHHhhccCCCCCceEEEEEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHHHHHHHHhh
Q 003517 453 FRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQ 532 (813)
Q Consensus 453 lriLv~v~~~~~v~~li~Ll~~~~~~~~s~~~v~~LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~ 532 (813)
-+||++++..++...++..+..++.. ....++++|+++......... ....+ .. . ....++..+.++.+.
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA~~--~~a~l~ll~v~~~~~~~~~~~--~~~~~-~~---~--~~~~~~~~~~l~~~~ 73 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIARP--VNGKISLITLASDPEMYNQFA--APMLE-DL---R--SVMQEETQSFLDKLI 73 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHHHH--hCCEEEEEEEccCcccchhhh--HHHHH-HH---H--HHHHHHHHHHHHHHH
Confidence 47999999999988888887777643 456789999986432111110 00000 00 0 011223333444444
Q ss_pred hcCceEEEeeEeeccCCChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccCCCceEEE
Q 003517 533 QLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIF 606 (813)
Q Consensus 533 ~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~apCsVgIl 606 (813)
...+++.... +....+..+.|++.|++.++||||+|-|++...... + .+-.+|++++||||.|+
T Consensus 74 ~~~~~~~~~~--~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~-------~-s~a~~v~~~~~~pVLvv 137 (142)
T PRK10116 74 QDADYPIEKT--FIAYGELSEHILEVCRKHHFDLVICGNHNHSFFSRA-------S-CSAKRVIASSEVDVLLV 137 (142)
T ss_pred HhcCCCeEEE--EEecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHHH-------H-HHHHHHHhcCCCCEEEE
Confidence 4334433211 114467889999999999999999999977543321 1 34569999999999776
No 45
>PRK10116 universal stress protein UspC; Provisional
Probab=98.18 E-value=2.8e-06 Score=81.17 Aligned_cols=131 Identities=11% Similarity=0.128 Sum_probs=78.7
Q ss_pred ceeEEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEeecCCCCCcccCCCCCCcccccccCCCCcc---ccHHHHHHHHH
Q 003517 623 SYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQ---VGDDAIISDFK 699 (813)
Q Consensus 623 ~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~l~~~~ 699 (813)
.++|+++.++.++.+.||++|.++|+..+++++++++.++..... . ..... ..+.++ +.-++.++++.
T Consensus 3 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~---~-----~~~~~-~~~~~~~~~~~~~~~l~~~~ 73 (142)
T PRK10116 3 YSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYN---Q-----FAAPM-LEDLRSVMQEETQSFLDKLI 73 (142)
T ss_pred CceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccch---h-----hhHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999999975421110 0 00000 000011 11123344443
Q ss_pred hhhccCCCCeEEEEEEecChHHHHHHHhccCC--CcEEEEccCCCCCCCCCCccccccCccccchhhhhcCCCCCcccEE
Q 003517 700 SIASKNQESITLEERLVESSQEIAGVLKSMNK--CNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVV 777 (813)
Q Consensus 700 ~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~--~DLviVGr~~~~~gl~~w~~~e~~~eLG~igd~las~d~~~~~SvL 777 (813)
.+. .+......+..|.....+++..++ +||+|+|+++ .++++.| +...+-++.. ++++||
T Consensus 74 ~~~-----~~~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~-~~~~~~~---------~s~a~~v~~~---~~~pVL 135 (142)
T PRK10116 74 QDA-----DYPIEKTFIAYGELSEHILEVCRKHHFDLVICGNHN-HSFFSRA---------SCSAKRVIAS---SEVDVL 135 (142)
T ss_pred Hhc-----CCCeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCc-chHHHHH---------HHHHHHHHhc---CCCCEE
Confidence 332 222233334444444445555543 9999999998 4554433 2345666654 788999
Q ss_pred EEe
Q 003517 778 VLQ 780 (813)
Q Consensus 778 vvq 780 (813)
||-
T Consensus 136 vv~ 138 (142)
T PRK10116 136 LVP 138 (142)
T ss_pred EEe
Confidence 995
No 46
>PRK11175 universal stress protein UspE; Provisional
Probab=98.13 E-value=5.8e-06 Score=89.84 Aligned_cols=144 Identities=14% Similarity=0.089 Sum_probs=85.4
Q ss_pred ceeEEEeecCCCh-------hhHHHHHHhhccCCCC-CceEEEEEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHH
Q 003517 453 FRILACFHSTRNI-------PSLINLVESSRGRKRG-KLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYI 524 (813)
Q Consensus 453 lriLv~v~~~~~v-------~~li~Ll~~~~~~~~s-~~~v~~LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i 524 (813)
-+||+|++..+.. ..+++.+..++.. . ...++++|+.+........ ........... ....++.
T Consensus 153 ~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~--~~~a~l~ll~v~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~ 224 (305)
T PRK11175 153 GKILVAVNVASEEPYHDALNEKLVEEAIDLAEQ--LNHAEVHLVNAYPVTPINIAI----ELPEFDPSVYN--DAIRGQH 224 (305)
T ss_pred CeEEEEeCCCCCccchhHHHHHHHHHHHHHHhh--CcCCceEEEEEecCcchhccc----cccccchhhHH--HHHHHHH
Confidence 4899999987643 3466666665532 3 5679999998744321100 00000000000 0111223
Q ss_pred HHHHHHhhhcCceEEEeeEeeccCCChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccCCCceE
Q 003517 525 VIAFEAYQQLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVG 604 (813)
Q Consensus 525 ~~af~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~apCsVg 604 (813)
.+.++.+.+..+++........ .+..+.|++.|+++++|+|+||.|++....+.+-|+. .++|++++||||.
T Consensus 225 ~~~l~~~~~~~~~~~~~~~v~~--G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~llGS~------a~~v~~~~~~pVL 296 (305)
T PRK11175 225 LLAMKALRQKFGIDEEQTHVEE--GLPEEVIPDLAEHLDAELVILGTVGRTGLSAAFLGNT------AEHVIDHLNCDLL 296 (305)
T ss_pred HHHHHHHHHHhCCChhheeecc--CCHHHHHHHHHHHhCCCEEEECCCccCCCcceeecch------HHHHHhcCCCCEE
Confidence 3344444433233321111122 4678999999999999999999998887776665544 6699999999998
Q ss_pred EEecCCCC
Q 003517 605 IFVDRGLG 612 (813)
Q Consensus 605 Ilvdrg~~ 612 (813)
++..+|+.
T Consensus 297 vv~~~~~~ 304 (305)
T PRK11175 297 AIKPDGYV 304 (305)
T ss_pred EEcCCCCC
Confidence 87666653
No 47
>PRK15456 universal stress protein UspG; Provisional
Probab=98.10 E-value=1.7e-05 Score=75.78 Aligned_cols=136 Identities=10% Similarity=0.080 Sum_probs=80.9
Q ss_pred ceeEEEecCCCc--ChHHHHHHHHHHhcCCCeEEEEEEeecCCCCCcccCCCCCCcccccccC-CCCccccHHHHHHHHH
Q 003517 623 SYSVVVPFFGGL--DDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLR-GDNDQVGDDAIISDFK 699 (813)
Q Consensus 623 ~~~i~v~f~GG~--ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~l~~~~ 699 (813)
.+||+++.+|++ .++.|+++|.++|+.. .+++++++.++........ ......+ .+..++.-++.++++.
T Consensus 2 ~~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~ 74 (142)
T PRK15456 2 YKTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHR------FAADVRRFEEHLQHEAEERLQTMV 74 (142)
T ss_pred CccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccccccc------cccchhhHHHHHHHHHHHHHHHHH
Confidence 368999999984 7999999999999875 5899999986532110000 0000000 0011122334555555
Q ss_pred hhhccCCCCeEEEEEEecChHHHHHHHhccC--CCcEEEEccCCCCCCCCCCccccccCccccchhhhhcCCCCCcccEE
Q 003517 700 SIASKNQESITLEERLVESSQEIAGVLKSMN--KCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVV 777 (813)
Q Consensus 700 ~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~--~~DLviVGr~~~~~gl~~w~~~e~~~eLG~igd~las~d~~~~~SvL 777 (813)
++. ..+...++. .+..|.....+++..+ +.||+|+|+|+ . |+.++ =+|-..+-++.. ++++||
T Consensus 75 ~~~--~~~~~~v~~-~v~~G~~~~~I~~~a~~~~~DLIVmG~~g-~-~~~~~-------llGS~a~~v~~~---a~~pVL 139 (142)
T PRK15456 75 SHF--TIDPSRIKQ-HVRFGSVRDEVNELAEELGADVVVIGSRN-P-SISTH-------LLGSNASSVIRH---ANLPVL 139 (142)
T ss_pred HHh--CCCCcceEE-EEcCCChHHHHHHHHhhcCCCEEEEcCCC-C-Cccce-------ecCccHHHHHHc---CCCCEE
Confidence 443 222233332 2233322223343333 39999999998 3 56554 389999999976 788999
Q ss_pred EEe
Q 003517 778 VLQ 780 (813)
Q Consensus 778 vvq 780 (813)
||.
T Consensus 140 vV~ 142 (142)
T PRK15456 140 VVR 142 (142)
T ss_pred EeC
Confidence 984
No 48
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=98.03 E-value=1.1e-05 Score=77.30 Aligned_cols=132 Identities=13% Similarity=0.146 Sum_probs=77.4
Q ss_pred ceeEEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEeecCCCCCcccCCCCCCcccccccCCCCccccH---HHHHHHHH
Q 003517 623 SYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGD---DAIISDFK 699 (813)
Q Consensus 623 ~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~l~~~~ 699 (813)
.+||+++.+|.+.++.||++|..+|+.++++++++++..+..... .+. ..... .+.+++.. .+.++++.
T Consensus 3 ~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~-~~~-----~~~~~--~~~~~~~~~~~~~~l~~~~ 74 (144)
T PRK15118 3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLY-TGL-----IDVNL--GDMQKRISEETHHALTELS 74 (144)
T ss_pred ceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhh-hhh-----hhcch--HHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999853211100 000 00000 01111111 12333333
Q ss_pred hhhccCCCCeEEEEEEecChHHHHHHHhccCC--CcEEEEccCCCCCCCCCCccccccCccccchhhhhcCCCCCcccEE
Q 003517 700 SIASKNQESITLEERLVESSQEIAGVLKSMNK--CNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVV 777 (813)
Q Consensus 700 ~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~--~DLviVGr~~~~~gl~~w~~~e~~~eLG~igd~las~d~~~~~SvL 777 (813)
.+. .+...+..+..|.....+++..++ +||+|+|+|+ .+ | + .+|-..+-+... ++++||
T Consensus 75 ~~~-----~~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~--~~---~---~---~lgSva~~v~~~---a~~pVL 135 (144)
T PRK15118 75 TNA-----GYPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQ--DF---W---S---KLMSSARQLINT---VHVDML 135 (144)
T ss_pred HhC-----CCCceEEEEEecCHHHHHHHHHHHhCCCEEEEeCcc--cH---H---H---HHHHHHHHHHhh---CCCCEE
Confidence 221 222333344333333334444433 9999999997 22 2 1 267677777765 788999
Q ss_pred EEee
Q 003517 778 VLQQ 781 (813)
Q Consensus 778 vvqq 781 (813)
||..
T Consensus 136 vv~~ 139 (144)
T PRK15118 136 IVPL 139 (144)
T ss_pred EecC
Confidence 9985
No 49
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=97.97 E-value=0.0019 Score=68.66 Aligned_cols=256 Identities=16% Similarity=0.141 Sum_probs=140.2
Q ss_pred HHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHH
Q 003517 105 LLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILA 184 (813)
Q Consensus 105 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~ 184 (813)
+..++|-.|-++|++...+..||...+-+.-+++..+++.+++.+++.. +. .....+.+-.+++.+--..=..+..
T Consensus 51 l~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~---g~-~Gls~laiiaa~~~~Ng~ly~al~~ 126 (312)
T PRK12460 51 LGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAE---GI-FGLSGLAIVAAMSNSNGGLYAALMG 126 (312)
T ss_pred HHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCcc---cc-cchHHHHHHHHHhcCcHHHHHHHHH
Confidence 4568899999999999988888888888888888888888777776532 11 1133455556666666666777788
Q ss_pred HcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchh
Q 003517 185 ELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEGEPVKE 264 (813)
Q Consensus 185 el~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e 264 (813)
|++ -++|.|-..+ ..++|.=-+.++++.. .++.+ .| ..
T Consensus 127 ~yG-~~~d~gA~~~--~sl~~GPf~tm~aLga---------------------------------~gLA~-ip----~~- 164 (312)
T PRK12460 127 EFG-DERDVGAISI--LSLNDGPFFTMLALGA---------------------------------AGLAN-IP----IM- 164 (312)
T ss_pred HcC-CHhhhhHHhh--hhhccCcHHHHHHHHH---------------------------------HHHhc-CC----hH-
Confidence 888 4555553322 1122211111111100 01111 11 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhH
Q 003517 265 LYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSW 344 (813)
Q Consensus 265 ~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~ 344 (813)
. + + +.+=+++.|+++.|-. +.+.+.+++= ..+.+|+|-+..|.++|+..+.+.. +
T Consensus 165 ~--l--v----------------~lilpILiGmilGNld---~~~~~~l~~G-i~f~I~f~~f~LG~~lnl~~I~~~G-~ 219 (312)
T PRK12460 165 A--L--V----------------AALLPLVLGMILGNLD---PDMRKFLTKG-GPLLIPFFAFALGAGINLSMLLQAG-L 219 (312)
T ss_pred H--H--H----------------HHHHHHHHHHHHhccc---hhhHHHHhcc-ceEeHHHHHHHhcCCeeHHHHHHhC-h
Confidence 0 0 0 1222455666666522 2233344433 3458999999999999999886521 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH--HHHhhhhHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHhH
Q 003517 345 GLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALG--FIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFIT 422 (813)
Q Consensus 345 ~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lg--l~l~~kG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~ 422 (813)
. .+++.+..++.-+..+++..|++|.+.+-++.+| ..-+.-|-. +++......+.. .+.-+..|.++++.|.+.
T Consensus 220 ~-GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgpA--AVaAadP~~~~~-~~~Ataqvaa~vivTail 295 (312)
T PRK12460 220 A-GILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATPL--AIAAADPSLAPV-AAAATAQVAASVIVTAIL 295 (312)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHHH--HHHHhchhHHHH-HHHHHHHHHHHHHHHHHH
Confidence 2 2222233334445566667788899888887777 432222222 222221111111 234455555555556555
Q ss_pred HHH-HHHhhccccc
Q 003517 423 TPI-LMAIYKPARK 435 (813)
Q Consensus 423 ~pl-v~~l~~~~~~ 435 (813)
.|+ ..|++|+.++
T Consensus 296 ~P~~t~~~~k~~~~ 309 (312)
T PRK12460 296 TPLLTSWVAKKEAK 309 (312)
T ss_pred HHHHHHHHHHHhcc
Confidence 554 5666665443
No 50
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=97.97 E-value=3.8e-05 Score=71.07 Aligned_cols=128 Identities=18% Similarity=0.310 Sum_probs=81.4
Q ss_pred eEEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEeecCCCCCcccCCCCCCcccccccCCCCccccHHHHHHHHHhhhcc
Q 003517 625 SVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSIASK 704 (813)
Q Consensus 625 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 704 (813)
+|++++.+++..+.++.+|.+||+..+.+++++++.++...... . ..+.+....++.+++++...
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~---------~----~~~~~~~~~~~~l~~~~~~~-- 65 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAA---------E----LAELLEEEARALLEALREAL-- 65 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcch---------h----HHHHHHHHHHHHHHHHHHHH--
Confidence 58899999999999999999999999999999999865332100 0 01112233446777776653
Q ss_pred CCCCeEEEEEEecChHHHHHHHhccCC--CcEEEEccCCCCCCCCCCccccccCccccchhhhhcCCCCCcccEEEE
Q 003517 705 NQESITLEERLVESSQEIAGVLKSMNK--CNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVL 779 (813)
Q Consensus 705 ~~~~v~y~e~~v~~~~e~~~~i~~~~~--~DLviVGr~~~~~gl~~w~~~e~~~eLG~igd~las~d~~~~~SvLvv 779 (813)
....+.+..+...... ...+.+..++ +|++|+|.++ ..++.+| -.|.+.+.|... ++.+||+|
T Consensus 66 ~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~dlvvig~~~-~~~~~~~-------~~~~~~~~ll~~---~~~pvliv 130 (130)
T cd00293 66 AEAGVKVETVVLEGDP-AEAILEAAEELGADLIVMGSRG-RSGLRRL-------LLGSVAERVLRH---APCPVLVV 130 (130)
T ss_pred hcCCCceEEEEecCCC-HHHHHHHHHHcCCCEEEEcCCC-CCcccee-------eeccHHHHHHhC---CCCCEEeC
Confidence 1123333333333222 3333433333 8999999987 4443332 378888888865 66788874
No 51
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=97.90 E-value=0.028 Score=62.66 Aligned_cols=294 Identities=18% Similarity=0.209 Sum_probs=154.2
Q ss_pred CCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHH
Q 003517 59 RQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGITL 138 (813)
Q Consensus 59 ~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~ 138 (813)
.+|.++-.++.|+++.. +|.++ ++...+..+.+.+..+-+-+++.=++.|+++++|.++|.+.. +..-.+
T Consensus 24 ~l~~~vl~~~~~~~lsn--lgli~-------~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~-F~~~~~ 93 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSN--LGLID-------SPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLA-FLIGAV 93 (378)
T ss_pred hcCHHHHHHHHHHHHHH--CCCcC-------CCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHH-HHHHHH
Confidence 37888888888888885 33331 122346677888888887788888899999999999887643 333344
Q ss_pred HHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhc------cHHHHHHHHHHcCccCChhHHHHHHHHHH-HHHHHHHH
Q 003517 139 PFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSIT------AFPVLARILAELKLLTTDLGRIAMSAAAV-NDVAAWVL 211 (813)
Q Consensus 139 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~T------s~~vv~~iL~el~l~~s~~g~l~ls~a~i-~D~~~~~l 211 (813)
..++|..+++.+.... .+. ...-++.+++.| -+.-+... ++. + .. ..++++. |.+..-+.
T Consensus 94 g~viG~~va~~l~~~~-l~~----~~wk~ag~l~gsyiGGs~N~~Av~~a---l~~-~---~~-~~~a~~aaDnv~~~~~ 160 (378)
T PF05684_consen 94 GTVIGAVVAFLLFGGF-LGP----EGWKIAGMLAGSYIGGSVNFVAVAEA---LGV-S---DS-LFAAALAADNVVMALW 160 (378)
T ss_pred HHHHHHHHHHHHHhhc-ccc----hHHHHHHHHHhcccCchhHHHHHHHH---HCC-C---HH-HHHHHHHHHHHHHHHH
Confidence 4455666666554332 011 111222222211 23323332 331 1 12 3334443 44444333
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HhhC--CCCCCchhHHHHHHHHHHH
Q 003517 212 LALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRPVLSLM--------------ARRS--PEGEPVKELYVCITLSMVL 275 (813)
Q Consensus 212 l~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i--------------~~~~--~~~~~~~e~~~~~~l~~~l 275 (813)
+.+...+.... +..-+|. .+.. .++++.. ..+...+++.+
T Consensus 161 ~~~l~~l~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~la~a~ 216 (378)
T PF05684_consen 161 FAFLLALPPFA-----------------------RKFDRWTKADTSSIEALEEEIEAEEAEWARKPIS-QDLAFLLAVAF 216 (378)
T ss_pred HHHHHHHhhhh-----------------------HHhhhccCCCccccchhhhhhhhhhhccccCCcH-hHHHHHHHHHH
Confidence 33333222100 0000000 0000 0011111 22334444444
Q ss_pred HHHHHHHHHCh-------------hHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchh
Q 003517 276 AASFVTDTIGI-------------HALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGAT 342 (813)
Q Consensus 276 ~~~~~ae~~g~-------------~~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~ 342 (813)
....++..++- -.++-....|++..- +|..+.+ .--+.+ ..+++=+||+.+|++.|+..+.+..
T Consensus 217 ~v~~~s~~la~~l~~~~~~~~~~~~~il~~tt~~l~~~~-~~~~~~l-~g~~~l-g~~lly~ffa~IGa~a~i~~l~~ap 293 (378)
T PF05684_consen 217 AVVALSHALAAWLPPLFAGISSSTWLILTVTTLGLATSF-PPFRKLL-RGASEL-GTFLLYLFFAVIGASADISELLDAP 293 (378)
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhc-cchhhcC-CchHHH-HHHHHHHHHHHHccccCHHHHHHhH
Confidence 44444333221 133444556666553 5555554 444555 5677888999999999999887622
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChH
Q 003517 343 SWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQ 406 (813)
Q Consensus 343 ~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~ 406 (813)
. ..++.++.+..-.+..++.++++|+|..+-...+-. |.-|-........+++.....+.
T Consensus 294 ~---~~l~~~i~l~iH~~l~l~~~kl~k~~l~~~~vAS~A-nIGGpaTA~a~A~a~~~~Lv~pg 353 (378)
T PF05684_consen 294 S---LFLFGFIILAIHLLLMLILGKLFKIDLFELLVASNA-NIGGPATAPAVAAAKGPSLVPPG 353 (378)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhhc-ccCCcchHHHHHHhcCCccHHHH
Confidence 2 223334445667777888999999999888776663 55665555444445544444333
No 52
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.56 E-value=0.016 Score=61.31 Aligned_cols=89 Identities=17% Similarity=0.158 Sum_probs=62.9
Q ss_pred HHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCChhHHHHHHHHHHhhccHHHHHHHH
Q 003517 105 LLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTV-LKGANQAPLLVFMGVSLSITAFPVLARIL 183 (813)
Q Consensus 105 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL 183 (813)
+..++|-.|-++|++...+..||...+-+.-+++..+++.++..+++..- ..+.-.....+.+-.+++.+-...=..+.
T Consensus 51 ig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~ 130 (314)
T PF03812_consen 51 IGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALM 130 (314)
T ss_pred HHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHH
Confidence 45688999999999999999999988888888888888888777775321 00100123445566667777777777777
Q ss_pred HHcCccCChhH
Q 003517 184 AELKLLTTDLG 194 (813)
Q Consensus 184 ~el~l~~s~~g 194 (813)
.|++ -+++.|
T Consensus 131 ~~yG-d~~D~g 140 (314)
T PF03812_consen 131 GQYG-DEEDVG 140 (314)
T ss_pred HHhC-CHHHhH
Confidence 8877 455544
No 53
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=97.40 E-value=0.31 Score=53.27 Aligned_cols=85 Identities=18% Similarity=0.184 Sum_probs=55.1
Q ss_pred hcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHH
Q 003517 55 LKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALA 134 (813)
Q Consensus 55 ~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~ 134 (813)
+++.+++..+--|+.|+++|+......+. ..-| .-...-+.+-++|++ +.|.++++.++.+.+.+.+.+...
T Consensus 26 ~~~~~l~~~~~AillG~~l~n~~~~~~~~---~~~~-Gi~f~~k~lLr~gIV----LlG~~l~~~~i~~~G~~~l~~~~~ 97 (335)
T TIGR00698 26 LADPALSALFLAILLGMVAGNTIYPQRDE---EKKR-GVLFAKPFLLRIGIT----LYGFRLTFPYIADVGPNEIVADTL 97 (335)
T ss_pred hccCCCcHHHHHHHHHHHHhccccccchh---hccc-hHHHHHHHHHHHHHH----HHCccccHHHHHHhhHHHHHHHHH
Confidence 34568999999999999999754211111 0101 001133466677777 469999999999999988877766
Q ss_pred HHHHHHHHHHHHH
Q 003517 135 GITLPFALGIGTS 147 (813)
Q Consensus 135 ~~~~~~~~~~~~~ 147 (813)
.+..++.++..++
T Consensus 98 ~v~~~~~~~~~~g 110 (335)
T TIGR00698 98 ILTSTFFLTVFLG 110 (335)
T ss_pred HHHHHHHHHHHHH
Confidence 6666655544433
No 54
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=97.38 E-value=0.14 Score=56.96 Aligned_cols=91 Identities=18% Similarity=0.262 Sum_probs=52.1
Q ss_pred ChhHHHHHHHHhhhcCCCC------CchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHHHHHHHHHHHH
Q 003517 285 GIHALFGAFVVGIIMPKEG------PFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGK 358 (813)
Q Consensus 285 g~~~~lgaf~aGL~l~~~~------~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K 358 (813)
.+....++++.|+++.+.. ...++..+++ .++.+-+|.+..=+.+++..+.+ ...++.+++++-.++.=
T Consensus 246 ~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I----~~~sL~~fl~~almsl~l~~l~~-~a~Plliil~~q~i~~~ 320 (368)
T PF03616_consen 246 TLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRI----SGISLDLFLAMALMSLKLWVLAD-YALPLLIILAVQTILMV 320 (368)
T ss_pred CCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHH----HHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3456789999999987521 1223333333 55566666666667788888876 22333333333333334
Q ss_pred HHHHHHHHHhcCCChHHHHHHHH
Q 003517 359 IVGTVVVAWSCKVPLRESLALGF 381 (813)
Q Consensus 359 ~~~~~l~~~~~~~~~re~~~lgl 381 (813)
+...++..+.+|-++ |+..++.
T Consensus 321 ~f~~fv~fr~~gkdy-daavm~~ 342 (368)
T PF03616_consen 321 LFAYFVTFRVMGKDY-DAAVMSA 342 (368)
T ss_pred HHHHHHhhhhhCCCh-hHHHHhh
Confidence 445566677787776 5555443
No 55
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=97.35 E-value=0.15 Score=54.88 Aligned_cols=146 Identities=18% Similarity=0.138 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHhcchh---hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHh
Q 003517 96 VLETLANIGLLFFLFLVGLELDIKSILRTGKK---SLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLS 172 (813)
Q Consensus 96 ~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~---~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls 172 (813)
.++..-.+++.++||..|+.+..+++++..|+ .+.....++++--+++++++..+. . ..-+..|..+-
T Consensus 35 ~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~----l-----~~~l~~Gl~ll 105 (319)
T COG0385 35 WLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFP----L-----PPELAVGLLLL 105 (319)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcC----C-----CHHHHHhHHhe
Confidence 34445588899999999999999999865443 333334444443344554444442 1 12355555553
Q ss_pred hccHH----HHHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC---C-chhHHHHHHHHHHHHHHHHHHH
Q 003517 173 ITAFP----VLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSS---S-SSLIAVWVLLSGAAFVVFAVFV 244 (813)
Q Consensus 173 ~Ts~~----vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~~~---~-~~~~~~~~~~~~i~~~~~~~~v 244 (813)
.+.|. .+...+. +.+. -+.++.+.++.+++.++.-+...+..+ . +.....+.++..++.-++++.+
T Consensus 106 ~~~Pggv~S~~~t~lA-----kGnV-alsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~ 179 (319)
T COG0385 106 GCCPGGVASNAMTYLA-----KGNV-ALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQL 179 (319)
T ss_pred eeCCCchhHHHHHHHh-----cCcH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 32222 2333322 2222 456677778888888776655554332 1 3344556666666666677777
Q ss_pred HHHHHHHHHhhC
Q 003517 245 IRPVLSLMARRS 256 (813)
Q Consensus 245 ~~~~~~~i~~~~ 256 (813)
+|+......++.
T Consensus 180 ~r~~~~~~~~~~ 191 (319)
T COG0385 180 LRPLLPKWVERL 191 (319)
T ss_pred HHHHHHHHHHHH
Confidence 787766555543
No 56
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=97.18 E-value=0.099 Score=57.05 Aligned_cols=103 Identities=10% Similarity=0.162 Sum_probs=63.4
Q ss_pred HHHHHHHHHHC-----hhHHHHHHHHhhhcCCCCCch--HHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHH
Q 003517 275 LAASFVTDTIG-----IHALFGAFVVGIIMPKEGPFA--GVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLL 347 (813)
Q Consensus 275 l~~~~~ae~~g-----~~~~lgaf~aGL~l~~~~~~~--~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~ 347 (813)
.+.+++.++++ +....++++.|.++.+..+.. .++.++.-+.+.++-+.+|....=|++.+..+.+- ..++.
T Consensus 232 ~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l-~lpl~ 310 (404)
T COG0786 232 AVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADL-ALPLL 310 (404)
T ss_pred HHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc-cccHH
Confidence 33344666655 467789999999997632211 12334444444678888888888888888888752 33333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 003517 348 LLVILNACFGKIVGTVVVAWSCKVPLRESLA 378 (813)
Q Consensus 348 ~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~ 378 (813)
+++.+-..+.-+.+.+...+..|-++..+..
T Consensus 311 viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~ 341 (404)
T COG0786 311 VILAVQTIVMALFAIFVTFRLMGKNYDAAVL 341 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcchhHHHH
Confidence 3333333344455667777888877776654
No 57
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.18 E-value=0.0029 Score=69.71 Aligned_cols=126 Identities=14% Similarity=0.209 Sum_probs=76.9
Q ss_pred cceeEEEecCCCcChHHHHHHHHHHhcCC--CeEEEEEEeecCCCCCcccCCCCCCcccccccCCCCccccHHHHHHHHH
Q 003517 622 VSYSVVVPFFGGLDDCEALAYGMRMAEHP--GIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFK 699 (813)
Q Consensus 622 ~~~~i~v~f~GG~ddreAL~~a~rma~~~--~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 699 (813)
..+||+++++|++..+.|+++|..+|+.+ +++++++++++...... ..+...+..++.+++.+
T Consensus 4 ~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~---------------~~~~~~~~~eelle~~~ 68 (357)
T PRK12652 4 AANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDP---------------EGQDELAAAEELLERVE 68 (357)
T ss_pred ccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCccccc---------------chhHHHHHHHHHHHHHH
Confidence 35799999999999999999999999884 69999999986432111 00111122233444444
Q ss_pred hhhcc----CCCCeEEEEEEe---------cChHHHHHHHhccCCCcEEEEccCCCCCCCCCCccccccCccccchhhhh
Q 003517 700 SIASK----NQESITLEERLV---------ESSQEIAGVLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLA 766 (813)
Q Consensus 700 ~~~~~----~~~~v~y~e~~v---------~~~~e~~~~i~~~~~~DLviVGr~~~~~gl~~w~~~e~~~eLG~igd~la 766 (813)
+.... ....+.++.+++ .+..|++....+-.++||||+|..- .-|= - -|-|-+++--|+
T Consensus 69 ~~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~-~~~~------~-~~~~~~~~~~~~ 140 (357)
T PRK12652 69 VWATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEY-NPGG------T-APMLQPLERELA 140 (357)
T ss_pred HHHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCC-CCCC------C-CcccchHHHHHH
Confidence 43200 113566665554 3556655444443349999999986 2221 1 344566666666
Q ss_pred cCCC
Q 003517 767 SSEF 770 (813)
Q Consensus 767 s~d~ 770 (813)
..+.
T Consensus 141 ~~~~ 144 (357)
T PRK12652 141 RAGI 144 (357)
T ss_pred hcCC
Confidence 6554
No 58
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=97.12 E-value=0.28 Score=53.06 Aligned_cols=82 Identities=26% Similarity=0.368 Sum_probs=56.8
Q ss_pred cccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchH-HHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHH
Q 003517 56 KPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMT-VLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALA 134 (813)
Q Consensus 56 ~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~-~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~ 134 (813)
....++..+--|+.|+++|+..++..+.+ . +... .-+.+-++|++ +.|.++++.++.+.+.+.+.+...
T Consensus 22 ~~~~l~~~~~AillG~~i~n~~~~~~~~~-----~-~Gi~~~~k~~Lr~gIV----LlG~~l~~~~i~~~G~~~~~~~~~ 91 (305)
T PF03601_consen 22 FLPGLGALLIAILLGMLIGNLFFGLPARF-----K-PGIKFSSKKLLRLGIV----LLGFRLSFSDILALGWKGLLIIII 91 (305)
T ss_pred cccCccHHHHHHHHHHHHhhhccCCcHHH-----H-hHHHHHHHHHHHHHHH----HHCccccHHHHHHhCccHHHHHHH
Confidence 34678888889999999996334432211 0 1122 23467777777 569999999999999988888777
Q ss_pred HHHHHHHHHHHHH
Q 003517 135 GITLPFALGIGTS 147 (813)
Q Consensus 135 ~~~~~~~~~~~~~ 147 (813)
.+.+++.++..++
T Consensus 92 ~v~~~~~~~~~lg 104 (305)
T PF03601_consen 92 VVILTFLLTYWLG 104 (305)
T ss_pred HHHHHHHHHHHHH
Confidence 7777776665544
No 59
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=97.11 E-value=0.035 Score=58.51 Aligned_cols=89 Identities=15% Similarity=0.187 Sum_probs=57.7
Q ss_pred HHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCChhHHHHHHHHHHhhccHHHHHHHH
Q 003517 105 LLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTV-LKGANQAPLLVFMGVSLSITAFPVLARIL 183 (813)
Q Consensus 105 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL 183 (813)
+..++|-.|-++|++...+..||...+.+.-+++..+++.+++.+++..- ..+.-.....+.+-.+++.|--..=..+.
T Consensus 51 l~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~ 130 (314)
T TIGR00793 51 LAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIM 130 (314)
T ss_pred HHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHH
Confidence 45688999999999998888888877777788888888887777775321 00001112334444555555555566666
Q ss_pred HHcCccCChhH
Q 003517 184 AELKLLTTDLG 194 (813)
Q Consensus 184 ~el~l~~s~~g 194 (813)
.|++ -++|.|
T Consensus 131 ~qyG-d~~D~g 140 (314)
T TIGR00793 131 QQYG-TKEEAG 140 (314)
T ss_pred HHcC-CHhhhh
Confidence 7777 344444
No 60
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=97.09 E-value=0.0032 Score=60.20 Aligned_cols=143 Identities=16% Similarity=0.175 Sum_probs=81.4
Q ss_pred ceeEEEee-cCCChhhHHHHHHhhccCCCCCceEEEEEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHHHHHHHHh
Q 003517 453 FRILACFH-STRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAY 531 (813)
Q Consensus 453 lriLv~v~-~~~~v~~li~Ll~~~~~~~~s~~~v~~LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 531 (813)
.+++++++ +.+........+...... ....++++++++-.+........... ..............++..+..+..
T Consensus 6 ~~il~~~d~~s~~~~~a~~~a~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 82 (154)
T COG0589 6 KKILVAVDVGSEAAEKALEEAVALAKR--LGAPLILLVVIDPLEPTALVSVALAD-APIPLSEEELEEEAEELLAEAKAL 82 (154)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHHHh--cCCeEEEEEEeccccccccccccccc-chhhhhHHHHHHHHHHHHHHHHHH
Confidence 47888888 777777666666655433 44556677777644432221100000 000000000012234455555544
Q ss_pred hhcCceE-EEeeEeeccCCChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccCCCceEEE
Q 003517 532 QQLSSVT-VRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIF 606 (813)
Q Consensus 532 ~~~~~v~-v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~apCsVgIl 606 (813)
.+...+. +....... ..-.+.|+..|.+.++|+|++|.+++++.++.+-| ++-++|++++||||.++
T Consensus 83 ~~~~~~~~~~~~~~~g--~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~llG------svs~~v~~~~~~pVlvv 150 (154)
T COG0589 83 AEAAGVPVVETEVVEG--SPSAEEILELAEEEDADLIVVGSRGRSGLSRLLLG------SVAEKVLRHAPCPVLVV 150 (154)
T ss_pred HHHcCCCeeEEEEecC--CCcHHHHHHHHHHhCCCEEEECCCCCccccceeee------hhHHHHHhcCCCCEEEE
Confidence 4433333 23333222 22269999999999999999999988777764433 34679999999999765
No 61
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=97.04 E-value=0.38 Score=51.66 Aligned_cols=183 Identities=17% Similarity=0.183 Sum_probs=90.5
Q ss_pred hhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHH
Q 003517 62 RVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFA 141 (813)
Q Consensus 62 ~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~ 141 (813)
-+.-.+++|+.+|-+.-+... ..+ .-+....+.--.+|+.+.|+=.=+++|.+.+++..|+.-.+ ..+..+-++
T Consensus 19 wv~l~i~~Gi~lG~~~p~~~~-~l~----~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L-~lsL~~Nwi 92 (342)
T COG0798 19 WVFLAIAIGILLGVHFPGLAQ-LLG----KLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPL-ILSLFVNWI 92 (342)
T ss_pred HHHHHHHHHHHHHhcccchhh-hcc----cceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHH-HHHHHHHHH
Confidence 355567888888854433110 000 01123345566788888888888999999999766552222 222222333
Q ss_pred HHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003517 142 LGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSS 221 (813)
Q Consensus 142 ~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~~~ 221 (813)
++=.+.+.+...+-.+.+ -...|.++-.-++ .++-++-=-++.+.+. ..++....+||++.+++++....+.-+
T Consensus 93 i~P~lm~~la~~fl~~~p----ey~~GlILlglAp-C~aMVivw~~La~Gd~-~~tlv~Va~n~l~qiv~y~~~~~~~l~ 166 (342)
T COG0798 93 IGPLLMFALAWFFLPDEP----EYRAGLILLGLAP-CIAMVIVWSGLAKGDR-ELTLVLVAFNSLLQIVLYAPLGKFFLG 166 (342)
T ss_pred HHHHHHHHHHHHHhCCCH----HHHHHHHHHHhhh-hHHHHHHHHhhccCcH-hhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222222222211111222 1333333322221 1222111113223322 445556778999999988655443322
Q ss_pred -CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 003517 222 -SSSLIAVWVLLSGAAFVVFAVFVIRPVLSLMARRS 256 (813)
Q Consensus 222 -~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~ 256 (813)
.+.....+.++..+...+.+-++.+.+.|++..|.
T Consensus 167 v~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~ 202 (342)
T COG0798 167 VISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKK 202 (342)
T ss_pred hccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222344555555555555666666677766665
No 62
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=96.98 E-value=0.39 Score=52.36 Aligned_cols=111 Identities=19% Similarity=0.281 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHhcchhh---HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhc
Q 003517 98 ETLANIGLLFFLFLVGLELDIKSILRTGKKS---LGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSIT 174 (813)
Q Consensus 98 ~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~T 174 (813)
|.....++..++|..|+.++.+++++..++. ...-...+++.-++++++........ ...+..|......
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~-------~~~l~~Gl~~~~~ 102 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFL-------PPELALGLLILAC 102 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccC-------CHHHHHHHHHHhh
Confidence 4677888888999999999999998754443 22222333333333444444432111 1124444443322
Q ss_pred cHHHHH-H-HHHHcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003517 175 AFPVLA-R-ILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIAL 218 (813)
Q Consensus 175 s~~vv~-~-iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~ 218 (813)
-|+.+. . .++..- +.+. ..++..+.++.++++++.-+...+
T Consensus 103 lPtTv~S~v~~T~~A--gGN~-a~Al~~~~~snllgv~ltP~ll~l 145 (313)
T PF13593_consen 103 LPTTVSSSVVLTRLA--GGNV-ALALFNAVLSNLLGVFLTPLLLLL 145 (313)
T ss_pred CCchhhHHHHHHHHc--CCCH-HHHHHHHHHHhhhhHhHHHHHHHH
Confidence 222111 1 122222 2222 455666777888888777655543
No 63
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=96.86 E-value=0.73 Score=51.73 Aligned_cols=91 Identities=13% Similarity=0.156 Sum_probs=54.5
Q ss_pred ChhHHHHHHHHhhhcCCCCCch--HHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHHHHHHHHHHHHH-HH
Q 003517 285 GIHALFGAFVVGIIMPKEGPFA--GVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKI-VG 361 (813)
Q Consensus 285 g~~~~lgaf~aGL~l~~~~~~~--~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~-~~ 361 (813)
.+....+|++.|+++.+-.+.. .++.++.-+...++.+-+|.+..=+++++..+.+ .+.-..++++..++.-. ..
T Consensus 244 ~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~--~a~Plliil~~q~i~~~l~~ 321 (398)
T TIGR00210 244 MLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELAD--LAGPIALILLVQVMFMALYA 321 (398)
T ss_pred CCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 3677899999999997632211 1122233333466777778788888899988876 33334444444433333 34
Q ss_pred HHHHHHhcCCChHHHHH
Q 003517 362 TVVVAWSCKVPLRESLA 378 (813)
Q Consensus 362 ~~l~~~~~~~~~re~~~ 378 (813)
.++.-+..+-+ -|+-.
T Consensus 322 ~fv~fr~mg~~-ydaaV 337 (398)
T TIGR00210 322 IFVTFRLMGKD-YDAAV 337 (398)
T ss_pred HHHhHHhccch-HHHHH
Confidence 45666667766 66655
No 64
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=96.83 E-value=0.24 Score=55.13 Aligned_cols=94 Identities=16% Similarity=0.236 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhhHHHHHHHhccc-cchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHHHHhhhh
Q 003517 310 IEKIEDMVSGLFLPLYFAASGLK-TNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRES-LALGFIMNTKG 387 (813)
Q Consensus 310 ~~kl~~~~~~~~~plFF~~~G~~-~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~-~~lgl~l~~kG 387 (813)
.++...|...-+.+-..+-+|+. +|+..+....++.. +++++...++-.+++++.+++.|+-+-|+ +..|++|+.+|
T Consensus 298 a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~-vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~G 376 (414)
T PF03390_consen 298 AKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQY-VVIVLATVLGAVIGAFLVGKLVGFYPVESAITAGLCMANMG 376 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCC
Confidence 34455555666666677788888 99988876555553 33444556677888999999999977776 77887887665
Q ss_pred -HHHHHHHHhhcccCCCC
Q 003517 388 -LVELIVLNIGKDRKVLN 404 (813)
Q Consensus 388 -~v~l~~~~~~~~~~~i~ 404 (813)
.=+++++..+...++..
T Consensus 377 GtGDvAVLsAa~RM~Lmp 394 (414)
T PF03390_consen 377 GTGDVAVLSAANRMELMP 394 (414)
T ss_pred CCCcchheehhhhccccc
Confidence 44566666665555443
No 65
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=96.73 E-value=0.013 Score=64.62 Aligned_cols=130 Identities=12% Similarity=0.050 Sum_probs=79.5
Q ss_pred ceeEEEeecCCChhhHHHHHHhhccCCCCCceEEEEEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHHHHHHHHhh
Q 003517 453 FRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQ 532 (813)
Q Consensus 453 lriLv~v~~~~~v~~li~Ll~~~~~~~~s~~~v~~LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~ 532 (813)
.|||+|++++++....++-+-.++.......+++++|+++........ ... ....+++++..++..
T Consensus 6 kkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~~---~~~-----------~~~~eelle~~~~~~ 71 (357)
T PRK12652 6 NRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPEG---QDE-----------LAAAEELLERVEVWA 71 (357)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccch---hHH-----------HHHHHHHHHHHHHHH
Confidence 479999999999999888777776331125789999999843211110 000 012233444444332
Q ss_pred hc------CceEEEeeEeec-----cCCChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccCCC
Q 003517 533 QL------SSVTVRPMTAIS-----ALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPC 601 (813)
Q Consensus 533 ~~------~~v~v~~~~~vs-----~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~apC 601 (813)
+. .+++++..+... ...+.++.|++.|+++++|+|+|+=.-+.. ++.+..|.+- .=|.++-|
T Consensus 72 ~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~~------~~~~~~~~~~-~~~~~~~~ 144 (357)
T PRK12652 72 TEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNPG------GTAPMLQPLE-RELARAGI 144 (357)
T ss_pred HHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCCC------CCCcccchHH-HHHHhcCC
Confidence 21 467777655442 115889999999999999999999654432 2233455555 34455555
Q ss_pred ce
Q 003517 602 SV 603 (813)
Q Consensus 602 sV 603 (813)
++
T Consensus 145 ~~ 146 (357)
T PRK12652 145 TY 146 (357)
T ss_pred ce
Confidence 53
No 66
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.67 E-value=0.065 Score=64.09 Aligned_cols=117 Identities=11% Similarity=0.055 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCC-CCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHH
Q 003517 267 VCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPK-EGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWG 345 (813)
Q Consensus 267 ~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~-~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~ 345 (813)
+.+.++.+.++..++..+|+++++|=.++|+++.. ....-. -.+.++.+ ..+-+.++...+|+++|+..++... .
T Consensus 10 ~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~-~~~~i~~l-aelGvv~LlF~iGLEl~~~~l~~~~--~ 85 (621)
T PRK03562 10 ALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVT-DVESILHF-AEFGVVLMLFVIGLELDPQRLWKLR--R 85 (621)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCC-CHHHHHHH-HHHHHHHHHHHHHhCcCHHHHHHHH--H
Confidence 34556666777788889999999999999999852 111111 12335555 5666777888899999999886521 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhh
Q 003517 346 LLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKG 387 (813)
Q Consensus 346 ~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG 387 (813)
....+-...++.-++..+..+.+++.++..++.+|..++.-.
T Consensus 86 ~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SS 127 (621)
T PRK03562 86 SIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSS 127 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 111111111222233344566778999999998888765543
No 67
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=96.61 E-value=0.085 Score=56.37 Aligned_cols=141 Identities=13% Similarity=0.216 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCchH-HHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHHHHH
Q 003517 273 MVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAG-VLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVI 351 (813)
Q Consensus 273 ~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~~~-~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii 351 (813)
.....+.+++.++++.++|-.++|+++... -++. .-.+.++.+ ..+-+.++....|+++|++.+... +.....+.
T Consensus 3 ~a~~~~~l~~~l~lP~~v~~il~GillGp~-~lg~i~~~~~~~~l-~~igl~~llF~~Gl~~d~~~l~~~--~~~~~~~~ 78 (273)
T TIGR00932 3 AAVLAVPLSRRLGIPSVLGYLLAGVLIGPS-GLGLISNVEGVNHL-AEFGVILLMFLIGLELDLERLWKL--RKAAFGVG 78 (273)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhCcc-cccCCCChHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHH--HHHHHHHH
Confidence 344567788899999999999999998631 1110 111234445 456677788899999999988752 22222222
Q ss_pred HHHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChHHHHHHHHHHHHHH
Q 003517 352 LNACFGK-IVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTT 419 (813)
Q Consensus 352 ~~~~~~K-~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t 419 (813)
...++.- ++.++..+++++.++.+++.+|..+++-.. -++..+..|.+..+.+.-..+.-.++++-
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts~--~v~~~il~~~~~~~~~~g~l~l~~~~~~D 145 (273)
T TIGR00932 79 VLQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSST--AVVVQVLKERGLLKTPFGQTVLGILLFQD 145 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhHH--HHHHHHHHHcCcccChHHHHHHHHHHHHH
Confidence 3333333 344455667789999999999998876642 24455556666666555444433333333
No 68
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=96.49 E-value=0.043 Score=52.26 Aligned_cols=145 Identities=17% Similarity=0.197 Sum_probs=87.2
Q ss_pred ceeEEEecC-CCcChHHHHHHHHHHhcCCCeEEEEEEeecCCCCCcccCCCCCCcccccccCCCCccccHHHHHHHHHhh
Q 003517 623 SYSVVVPFF-GGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSI 701 (813)
Q Consensus 623 ~~~i~v~f~-GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 701 (813)
.++|++.++ |.+..+.|+..|...+...+..++++.+.+................ .........+..++.+++.+..
T Consensus 5 ~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 82 (154)
T COG0589 5 YKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAP--IPLSEEELEEEAEELLAEAKAL 82 (154)
T ss_pred cceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccch--hhhhHHHHHHHHHHHHHHHHHH
Confidence 468999999 9999999999999999999999998888754332110000000000 0000011233345666666654
Q ss_pred hccCCCCeEE-E-EEEecCh-HHHHHHHhccCCCcEEEEccCCCCCCCCCCccccccCccccchhhhhcCCCCCcccEEE
Q 003517 702 ASKNQESITL-E-ERLVESS-QEIAGVLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVV 778 (813)
Q Consensus 702 ~~~~~~~v~y-~-e~~v~~~-~e~~~~i~~~~~~DLviVGr~~~~~gl~~w~~~e~~~eLG~igd~las~d~~~~~SvLv 778 (813)
. ....+.. . +....++ .+++.......++||+++|.++ .+++.+- -||-+.+.++.. ++++|||
T Consensus 83 ~--~~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g-~~~l~~~-------llGsvs~~v~~~---~~~pVlv 149 (154)
T COG0589 83 A--EAAGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRG-RSGLSRL-------LLGSVAEKVLRH---APCPVLV 149 (154)
T ss_pred H--HHcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCC-Cccccce-------eeehhHHHHHhc---CCCCEEE
Confidence 3 2222222 2 2223334 3555444443459999999987 4555542 388888888876 7889999
Q ss_pred Eeec
Q 003517 779 LQQY 782 (813)
Q Consensus 779 vqq~ 782 (813)
+...
T Consensus 150 v~~~ 153 (154)
T COG0589 150 VRSE 153 (154)
T ss_pred EccC
Confidence 9753
No 69
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=96.46 E-value=0.95 Score=49.68 Aligned_cols=103 Identities=17% Similarity=0.120 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhhccChhHHHhcchhhHHH---HHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHH-
Q 003517 102 NIGLLFFLFLVGLELDIKSILRTGKKSLGI---ALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFP- 177 (813)
Q Consensus 102 ~lgl~~llF~~Gle~d~~~l~~~~~~~~~i---a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~- 177 (813)
.+++.++||-.|++++++++++..|+...+ -+.++++-=+++++++..+. + .+ ..+.+|..+-...|.
T Consensus 46 ~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~---~--~~---p~l~~GliLv~~~Pgg 117 (328)
T TIGR00832 46 AIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFL---R--DL---FEYIAGLILLGLARCI 117 (328)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHc---C--CC---HHHHHHHHHHHhcchH
Confidence 346668999999999999998765553322 22333322223444444331 1 11 124555554333322
Q ss_pred HHHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 003517 178 VLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALA 215 (813)
Q Consensus 178 vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~l~ 215 (813)
+.+.+.+.+- +.+.. ++++.+.++-+++.++....
T Consensus 118 ~~S~v~T~lA--kGnva-lsv~lt~~stLl~~~~~P~l 152 (328)
T TIGR00832 118 AMVFVWNQLA--KGDPE-YTLVLVAVNSLFQVFLYAPL 152 (328)
T ss_pred HHHHHHHHHc--CCCHH-HHHHHHHHHHHHHHHHHHHH
Confidence 2333334333 33333 55555667777766665433
No 70
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=96.42 E-value=0.24 Score=53.95 Aligned_cols=46 Identities=17% Similarity=0.275 Sum_probs=36.6
Q ss_pred HHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003517 106 LFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLR 151 (813)
Q Consensus 106 ~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~ 151 (813)
..++|-.|-.+|++...+..||...+.+.-+.+..+++.++..++.
T Consensus 54 ~~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~~~~~~~~~~~~~~~g 99 (326)
T PRK05274 54 AVFLFCMGASINLRATGTVLKKGGTLLLTKFAVAALVGVIAGKFIG 99 (326)
T ss_pred HHHHHHcCCEEeccccchhhhhchhHHHHHHHHHHHHHHHhhhcch
Confidence 3688999999999998888888887777777777777776665554
No 71
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.37 E-value=0.14 Score=61.12 Aligned_cols=115 Identities=15% Similarity=0.119 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCC-CCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHH
Q 003517 267 VCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPK-EGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWG 345 (813)
Q Consensus 267 ~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~-~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~ 345 (813)
..+.++.+.++..++..+|+++++|=.++|+++.. ....-+ -.+.++.+ ..+-+.++...+|+++|+..++.....
T Consensus 10 ~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~-~~~~i~~l-aelGvv~LLF~iGLel~~~~l~~~~~~- 86 (601)
T PRK03659 10 GVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFIS-DVDEILHF-SELGVVFLMFIIGLELNPSKLWQLRRS- 86 (601)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCC-cHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHH-
Confidence 34455566666778888999999999999999853 111111 11335544 466666777888999999988653221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhh
Q 003517 346 LLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNT 385 (813)
Q Consensus 346 ~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~ 385 (813)
...+....++.-++..+..+.++++++..++.+|..+..
T Consensus 87 -~~~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~ 125 (601)
T PRK03659 87 -IFGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAM 125 (601)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 111111111111222223345578899998888875543
No 72
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=96.35 E-value=2.1 Score=46.67 Aligned_cols=300 Identities=17% Similarity=0.215 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCh--hHH-HHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHh
Q 003517 37 IILQICLVVAFTRFLAFLLKPLRQPR--VIA-EIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVG 113 (813)
Q Consensus 37 ~l~~i~lil~~~~~~~~l~~~l~~P~--ii~-~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~G 113 (813)
...|.++.++++...++++..+++|. ..| -+++|++.+-...- .-.| ..+..+|.+.+=-.+|
T Consensus 7 ~~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~-------l~~P-------~~l~~~~q~ilG~~ig 72 (352)
T COG3180 7 IILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLT-------LPLP-------RGLFKAGQVILGIMIG 72 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccc-------ccCC-------hHHHHHHHHHHHHHHh
Confidence 36788888999999999999988765 556 66777777621110 0111 3455566666666899
Q ss_pred hccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCChh
Q 003517 114 LELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDL 193 (813)
Q Consensus 114 le~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~ 193 (813)
..+..+.+... ++-+.+.....+++...+...+|++...- .++. ..+++ |. ++-.......+-+|.| .+.+.
T Consensus 73 ~~~t~s~l~~l-~~~w~~~~~v~~~tl~~s~l~g~ll~r~~--~~~~-~Ta~~-gs--~PGgas~m~~iA~d~g-Ad~~~ 144 (352)
T COG3180 73 ASLTPSVLDTL-KSNWPIVLVVLLLTLLSSILLGWLLKRFS--ILPG-NTAFL-GS--SPGGASAMVSIAQDYG-ADLRL 144 (352)
T ss_pred hhcCHHHHHHH-HHcccHHHHHHHHHHHHHHHHHHHHHHhc--CCCc-chhhH-hc--CCchHHHHHHHHHHhC-CChhH
Confidence 99998877543 33344445555566666666777665432 1221 11122 11 1111111222224444 23222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC------CCchhHHH
Q 003517 194 GRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRPVLSLMARRSPEG------EPVKELYV 267 (813)
Q Consensus 194 g~l~ls~a~i~D~~~~~ll~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~------~~~~e~~~ 267 (813)
-.+..+.= .+.+.....++.+.... .++..++ .+.....+
T Consensus 145 VAl~Q~lR--------------------------------vl~Vvl~vplv~~~~~~--~~a~~~~~~~i~~~~~~~~~~ 190 (352)
T COG3180 145 VALMQYLR--------------------------------VLFVVLLAPLVSRLFVG--DGANGSGTPEIWLPPVDWLIL 190 (352)
T ss_pred HHHHHHHH--------------------------------HHHHHHHHHHHHHHhcC--CCCCCCCCccccCchhhHHHH
Confidence 21111110 00011111111111110 0111000 01111113
Q ss_pred HHHHHHHHHHHHHHHHHChh--HHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhh-H
Q 003517 268 CITLSMVLAASFVTDTIGIH--ALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATS-W 344 (813)
Q Consensus 268 ~~~l~~~l~~~~~ae~~g~~--~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~-~ 344 (813)
.+.+...++.+.+...+++. ..+|+++.|..+.-......++-+-+. .+-.-+.=..+|.++|-..+..... .
T Consensus 191 ~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~~~lP~wl~----~va~~~iG~~IG~~f~~~~l~~~~r~~ 266 (352)
T COG3180 191 LLLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGGITIQLPAWLL----AVAQALIGALIGSRFDRSILREAKRLL 266 (352)
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcccceeeeCCHHHH----HHHHHHHHHHHcccccHHHHHHhHhhc
Confidence 44445555555555655553 467777777776643322211211111 1222234467899998666544222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcc
Q 003517 345 GLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKD 399 (813)
Q Consensus 345 ~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~ 399 (813)
....+.++..++.-...+++..++.+.++.++.. | .+|-|.-+++....+.+
T Consensus 267 ~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~L-a--~sPGGl~~ma~~A~~l~ 318 (352)
T COG3180 267 PAILVSIIALMAIAAGMAGLLSWLTGIDLNTAYL-A--TSPGGLDTMAAIAAALG 318 (352)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-H--cCCCcHHHHHHHHHHcC
Confidence 2233334444555566677788888999887753 2 58888877766655554
No 73
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=96.30 E-value=0.25 Score=53.39 Aligned_cols=84 Identities=23% Similarity=0.402 Sum_probs=54.6
Q ss_pred HhhHHHHHHHhccc-cchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHHHHhhhh-HHHHHHHH
Q 003517 319 GLFLPLYFAASGLK-TNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRES-LALGFIMNTKG-LVELIVLN 395 (813)
Q Consensus 319 ~~~~plFF~~~G~~-~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~-~~lgl~l~~kG-~v~l~~~~ 395 (813)
.+.-|+. +.+|.. +|+..+.+..+|..++ +.+...++-..+.++.+|+.|+-+-|+ +..|++|+.+| .-+++++.
T Consensus 327 ~~t~~Lm-~giGv~ytdl~ev~~alt~~~vi-i~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~GGtGDvaVLs 404 (438)
T COG3493 327 NLTWPLM-AGIGVAYTDLNEVAAALTWQNVI-IALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANMGGTGDVAVLS 404 (438)
T ss_pred hhHHHHH-HhhhhccccHHHHHHHhchhHHH-HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCCCCCCchHHhh
Confidence 4445544 455666 8888877655665433 333445667788899999999977776 55569998776 44566666
Q ss_pred hhcccCCCC
Q 003517 396 IGKDRKVLN 404 (813)
Q Consensus 396 ~~~~~~~i~ 404 (813)
.+-..++++
T Consensus 405 Aa~RM~Lmp 413 (438)
T COG3493 405 AADRMELMP 413 (438)
T ss_pred hcchhcccc
Confidence 555555444
No 74
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=96.27 E-value=2.4 Score=46.40 Aligned_cols=128 Identities=16% Similarity=0.101 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHHCh--hHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchh-h
Q 003517 267 VCITLSMVLAASFVTDTIGI--HALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGAT-S 343 (813)
Q Consensus 267 ~~~~l~~~l~~~~~ae~~g~--~~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~-~ 343 (813)
+...+...+..+++.+.+++ ..++|+++.+.++.......-.+-+.+... ..-+.=..+|.+++...+.... .
T Consensus 157 l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l~~~----aqv~iG~~iG~~f~~~~l~~~~~~ 232 (318)
T PF05145_consen 157 LALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWLVNA----AQVLIGASIGSRFTRETLRELRRL 232 (318)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHHHHH----HHHHHHHHHHccccHHHHHHHHHH
Confidence 34455566677777887777 457888877777653211111111122222 1122346779999877665432 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccC
Q 003517 344 WGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRK 401 (813)
Q Consensus 344 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~ 401 (813)
++..++..+..+..-.+.+++..++.++++.+++.- +.|-|.-++.+.....+.+
T Consensus 233 ~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~La---~aPGGl~eM~l~A~~l~~d 287 (318)
T PF05145_consen 233 LPPALLSTLLLLALCALFAWLLSRLTGIDFLTALLA---TAPGGLAEMALIALALGAD 287 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH---hCCccHHHHHHHHHHcCCC
Confidence 333444444555556777888889999999887633 6899988887776666543
No 75
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=96.22 E-value=0.2 Score=56.57 Aligned_cols=152 Identities=16% Similarity=0.177 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCC-CCC---chHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchh
Q 003517 267 VCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPK-EGP---FAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGAT 342 (813)
Q Consensus 267 ~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~-~~~---~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~ 342 (813)
+..++..+...+++.+.+|+++++|=.++|+++.. +.. ..++..+-+..+ =.-++...+|+.+|+..++...
T Consensus 11 ~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~lael----Gvi~LlF~~GLE~~~~~l~~~~ 86 (397)
T COG0475 11 LLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAEL----GVVFLLFLIGLEFDLERLKKVG 86 (397)
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHH----hHHHHHHHHHHCcCHHHHHHhc
Confidence 45566666677789999999999999999999975 111 122333333343 3344567889999999887633
Q ss_pred hHHHHHHHHHHHHHHHHHHH--HHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHH
Q 003517 343 SWGLLLLVILNACFGKIVGT--VVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTF 420 (813)
Q Consensus 343 ~~~~~~~ii~~~~~~K~~~~--~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~ 420 (813)
... ........+..=++.. +... .++.++..++.+|..+..-.. -+.+.+..|.|....+....++-..++.=.
T Consensus 87 ~~~-~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~sS~--~i~~~iL~e~~~~~~~~g~~~l~~~i~~Di 162 (397)
T COG0475 87 RSV-GLGVAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALALSST--AIVLKILMELGLLKTREGQLILGALVFDDI 162 (397)
T ss_pred hhh-hhhHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHHHH--HHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 221 2222222222222222 2223 589999999999988766543 144555566666666655554334333333
Q ss_pred hHHHHH
Q 003517 421 ITTPIL 426 (813)
Q Consensus 421 i~~plv 426 (813)
..-|++
T Consensus 163 ~~i~lL 168 (397)
T COG0475 163 AAILLL 168 (397)
T ss_pred HHHHHH
Confidence 333333
No 76
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.17 E-value=0.19 Score=59.45 Aligned_cols=133 Identities=12% Similarity=0.199 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCC-CCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHH
Q 003517 269 ITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKE-GPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLL 347 (813)
Q Consensus 269 ~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~-~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~ 347 (813)
.++..+++++.++..++++.++|=.++|+++... ...-+. .+.++.+ ..+-+-++...+|+++|+..+.... ...
T Consensus 13 ~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~-~~~~~~l-a~lGli~llF~~Gle~d~~~l~~~~--~~~ 88 (558)
T PRK10669 13 GGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVAD-TKLAPEL-AELGVILLMFGVGLHFSLKDLMAVK--SIA 88 (558)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccc-hHHHHHH-HHHHHHHHHHHhHhcCCHHHHHHHh--hHH
Confidence 3455666677778888999999999999998531 111111 1234444 4556666777889999998876422 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChHH
Q 003517 348 LLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQA 407 (813)
Q Consensus 348 ~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~ 407 (813)
....+...+.=++.++.....+++++.+++.+|..++.-.. .+++....+.+.++.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s~~ 146 (558)
T PRK10669 89 IPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDSQR 146 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccCcc
Confidence 11111112222333444556788999999999987776443 35555666667666544
No 77
>COG2855 Predicted membrane protein [Function unknown]
Probab=96.03 E-value=0.096 Score=56.30 Aligned_cols=111 Identities=14% Similarity=0.088 Sum_probs=80.7
Q ss_pred HHHHHChhHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHHHHHHHHHHHHH
Q 003517 280 VTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKI 359 (813)
Q Consensus 280 ~ae~~g~~~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~ 359 (813)
..+..|+++..=|.+.|+++....+...+...-++.. ...++.+=.++.|++++++++.+- .+. .+.+.+..+..-+
T Consensus 31 ~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs-~k~LLr~gIvLlG~~ltl~~i~~~-G~~-~v~~~~~~l~~t~ 107 (334)
T COG2855 31 FSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFS-SKKLLRLGIVLLGFRLTLSDIADV-GGS-GVLIIAITLSSTF 107 (334)
T ss_pred HhhhcCchHHHHHHHHHHHHhccccchhhhccchhhh-HHHHHHHHHHHHcceeeHHHHHHc-Ccc-HHHHHHHHHHHHH
Confidence 4455667788999999999986566665666666655 677788888999999999988762 222 2334444456667
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHH
Q 003517 360 VGTVVVAWSCKVPLRESLALGFIMNTKGLVELIV 393 (813)
Q Consensus 360 ~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~ 393 (813)
+.+++.++++|++++.+..+|..-+.=|.-+++.
T Consensus 108 ~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA 141 (334)
T COG2855 108 LFAYFLGKLLGLDKKLALLIAAGSSICGASAIAA 141 (334)
T ss_pred HHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHH
Confidence 7888888899999999999988766666544333
No 78
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=95.88 E-value=0.087 Score=52.86 Aligned_cols=129 Identities=23% Similarity=0.392 Sum_probs=83.8
Q ss_pred HHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccCh-----hHHHhcchhhHHHHHHHHHH
Q 003517 64 IAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDI-----KSILRTGKKSLGIALAGITL 138 (813)
Q Consensus 64 i~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~-----~~l~~~~~~~~~ia~~~~~~ 138 (813)
++.+++|+++|-..... ....+...+..+.+++|.+|+++-- +.+++.+++++.+.+..++-
T Consensus 2 l~~li~Gi~lG~~~~~~-------------~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlG 68 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP-------------FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILG 68 (191)
T ss_pred eeeHHHHHHHHHHhccc-------------ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44577899888432211 1122668888999999999999854 45677889999999988888
Q ss_pred HHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 003517 139 PFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAI 216 (813)
Q Consensus 139 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~ 216 (813)
+++.+.+++.++.... ..++.++.-+. =+.....+++|++ ..+.|.++.-+=++-+++++++.-++.
T Consensus 69 Sllgg~l~~~ll~~~~-------~~~lav~sG~G--wYSlsg~~i~~~~--~~~~G~iafl~n~~RE~~a~~~~P~~~ 135 (191)
T PF03956_consen 69 SLLGGLLASLLLGLSL-------KESLAVASGFG--WYSLSGVLITQLY--GPELGTIAFLSNLFREILAIILIPLLA 135 (191)
T ss_pred HHHHHHHHHHHhcCCH-------HHHHHHHccCc--HHHhHHHHHHhhh--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887777763221 23333333221 1222233445444 668888888777777777776665443
No 79
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.88 E-value=0.29 Score=52.98 Aligned_cols=128 Identities=15% Similarity=0.149 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHH----HHChhHHHHHHHHhhhcCC-CCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchh
Q 003517 268 CITLSMVLAASFVTD----TIGIHALFGAFVVGIIMPK-EGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGAT 342 (813)
Q Consensus 268 ~~~l~~~l~~~~~ae----~~g~~~~lgaf~aGL~l~~-~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~ 342 (813)
.+.+++.....++++ ..++++.+=|.+.|+++.| .....+....-++.. ...++.+=-+..|.++++.++.+.
T Consensus 4 ~l~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~-~k~~Lr~gIVLlG~~l~~~~i~~~- 81 (305)
T PF03601_consen 4 LLCFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFS-SKKLLRLGIVLLGFRLSFSDILAL- 81 (305)
T ss_pred HHHHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHH-HHHHHHHHHHHHCccccHHHHHHh-
Confidence 344555555555555 3677888889999999987 444455555555544 567788888999999999988762
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HhcCCChHHHHHHHHHHhhhhHHHHHHHHhhc
Q 003517 343 SWGLLLLVILNACFGKIVGTVVVA-WSCKVPLRESLALGFIMNTKGLVELIVLNIGK 398 (813)
Q Consensus 343 ~~~~~~~ii~~~~~~K~~~~~l~~-~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~ 398 (813)
.+..... .++.+..-+..++..+ +.+|++.+.+..+|...+.=|.-+++...-..
T Consensus 82 G~~~~~~-~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i 137 (305)
T PF03601_consen 82 GWKGLLI-IIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVI 137 (305)
T ss_pred CccHHHH-HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccc
Confidence 2322222 2333333344444445 99999999999999887777765544443333
No 80
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=95.68 E-value=0.75 Score=46.13 Aligned_cols=106 Identities=20% Similarity=0.282 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhhccChhHHHhcchhhHHHH--H-HHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhcc-HHH
Q 003517 103 IGLLFFLFLVGLELDIKSILRTGKKSLGIA--L-AGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITA-FPV 178 (813)
Q Consensus 103 lgl~~llF~~Gle~d~~~l~~~~~~~~~ia--~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts-~~v 178 (813)
+.+.+.||..|++++++++++..|+...+. + ..+++.-++++++++.+.. .+ .....|..+...+ -+.
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~-----~~---~~~~~Gl~l~~~~P~~~ 73 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLP-----LS---PALALGLLLVAACPGGP 73 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT----------HHHHHHHHHHHHS-B-T
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CC---HHHHHHHHHHhcCCcHH
Confidence 457889999999999999998776644322 2 2233322334444422211 11 1233333332211 122
Q ss_pred HHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003517 179 LARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIALS 219 (813)
Q Consensus 179 v~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~~ 219 (813)
.+...+.+- +.+.. ++.+...++.+.+.++.-+...+.
T Consensus 74 ~s~~~t~l~--~Gd~~-ls~~lt~istll~~~~~P~~~~l~ 111 (187)
T PF01758_consen 74 ASNVFTYLA--GGDVA-LSVSLTLISTLLAPFLMPLLLYLL 111 (187)
T ss_dssp HHHHHHHHT--T--HH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCcc-cccceeeHHHHHHHHHHHHHHHHH
Confidence 334444333 33332 666667777777777766555544
No 81
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=95.68 E-value=3.1 Score=44.79 Aligned_cols=48 Identities=23% Similarity=0.343 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhccChhHHHhcchh--hHHHHHH-HH-HHHHHHHHHHHHHH
Q 003517 102 NIGLLFFLFLVGLELDIKSILRTGKK--SLGIALA-GI-TLPFALGIGTSFVL 150 (813)
Q Consensus 102 ~lgl~~llF~~Gle~d~~~l~~~~~~--~~~ia~~-~~-~~~~~~~~~~~~~l 150 (813)
-..+.+.||..|+.++++++++..++ ....+.. .+ +.|.+ +++++.++
T Consensus 11 ~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Pll-a~~l~~~~ 62 (286)
T TIGR00841 11 LILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLT-GFLLAKVF 62 (286)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 33488899999999999999986653 3333333 33 34544 34444443
No 82
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.55 E-value=0.3 Score=57.92 Aligned_cols=117 Identities=19% Similarity=0.213 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCc--hHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHH
Q 003517 269 ITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPF--AGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGL 346 (813)
Q Consensus 269 ~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~--~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~ 346 (813)
+++.+..+++.++..+|++.+++-.++|+++.....- ...-.+-.+.+ ..+.+++.....|+++|+..+.. .+..
T Consensus 13 ~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i-~~l~L~~iLF~~Gl~~~~~~l~~--~~~~ 89 (562)
T PRK05326 13 LLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLV-GNLALAVILFDGGLRTRWSSFRP--ALGP 89 (562)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHH-HHHHHHHHHHcCccCCCHHHHHH--HHHH
Confidence 3344445555667778888888888888888642111 00111223333 67888889999999999998875 3433
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHhcCCChHHHHHHHHHHhhhhH
Q 003517 347 LLLVILNACFGKIV-GTVVVAWSCKVPLRESLALGFIMNTKGL 388 (813)
Q Consensus 347 ~~~ii~~~~~~K~~-~~~l~~~~~~~~~re~~~lgl~l~~kG~ 388 (813)
...+....++.-.+ .++...++++++|.+++.+|.++++-..
T Consensus 90 ~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~ 132 (562)
T PRK05326 90 ALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDA 132 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCch
Confidence 33333333333233 3445566789999999999988776654
No 83
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=95.29 E-value=2 Score=46.99 Aligned_cols=119 Identities=16% Similarity=0.217 Sum_probs=76.9
Q ss_pred ChhHHHHHHHHhhhcCCCCCchHHHHHHHHHH---HHHhhHHHHHHHhccc-cchhhhhchhhHHHHHHHHHHHHHHHHH
Q 003517 285 GIHALFGAFVVGIIMPKEGPFAGVLIEKIEDM---VSGLFLPLYFAASGLK-TNVATIRGATSWGLLLLVILNACFGKIV 360 (813)
Q Consensus 285 g~~~~lgaf~aGL~l~~~~~~~~~l~~kl~~~---~~~~~~plFF~~~G~~-~dl~~l~~~~~~~~~~~ii~~~~~~K~~ 360 (813)
++|+..-..++|.++....-..+.+.++...+ ...-+.+..++.+|+. +|+..+.+..+|. .+++++...++=.+
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~-~vviiv~~Vlg~ii 281 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQ-FVVICLSVVVAMIL 281 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchh-HhhhHHHHHHHHHH
Confidence 66888888888888775444556666655544 2333444445555766 7888776633343 34455555677788
Q ss_pred HHHHHHHhcCCChHHH-HHHHHHHhhhh-HHHHHHHHhhcccCCCC
Q 003517 361 GTVVVAWSCKVPLRES-LALGFIMNTKG-LVELIVLNIGKDRKVLN 404 (813)
Q Consensus 361 ~~~l~~~~~~~~~re~-~~lgl~l~~kG-~v~l~~~~~~~~~~~i~ 404 (813)
++++.+++.|+-+-|+ +..|++|+.+| .=+++++..+...+++.
T Consensus 282 ~s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lmp 327 (347)
T TIGR00783 282 GGAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIP 327 (347)
T ss_pred HHHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhccccc
Confidence 8999999999977776 66678887765 44556665555544443
No 84
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=94.87 E-value=0.81 Score=45.01 Aligned_cols=127 Identities=23% Similarity=0.286 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHH-h-cccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhH
Q 003517 43 LVVAFTRFLAFL-L-KPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKS 120 (813)
Q Consensus 43 lil~~~~~~~~l-~-~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~ 120 (813)
+.+.+..+++.+ . +++++-...|-+++|+++|-. ++..+. + -.....+.+.++|+.+|++.+|++--++-
T Consensus 4 l~i~lG~llG~i~i~~~~~LG~a~G~L~vgL~~G~~--~~~~~~----~--~~~~~~~~l~~~GL~lFl~~VGl~aG~~F 75 (169)
T PF06826_consen 4 LGIALGYLLGRIKIPGGFSLGAAGGVLFVGLILGAL--GRTGPI----F--LPISAPSFLRQLGLALFLAAVGLSAGPGF 75 (169)
T ss_pred HHHHHHHHhcceeeccceeccccHHHHHHHHHHHHh--hhccCC----C--CCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455554 3 666777777999999999942 221111 1 12345678999999999999999998765
Q ss_pred H---HhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHH-HHhhccHHHHHHHHHH
Q 003517 121 I---LRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGV-SLSITAFPVLARILAE 185 (813)
Q Consensus 121 l---~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~e 185 (813)
+ |+.+.+...+++.-.++|.++++.+++++. +.+. ....|. +=+.|++|......+.
T Consensus 76 ~~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~-----~l~~---~~~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 76 FSSLKRGGLKLLLLGVIITLVPLLIALVIGRYLF-----KLNP---GIAAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCH---HHHHHHHHccccCcHHHHHHHHh
Confidence 5 455566666666666667766666665332 1221 233333 3356777777666544
No 85
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=94.81 E-value=1.2 Score=48.92 Aligned_cols=123 Identities=12% Similarity=0.060 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHH-----HChhHHHHHHHHhhhcCCCC--CchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhch
Q 003517 269 ITLSMVLAASFVTDT-----IGIHALFGAFVVGIIMPKEG--PFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGA 341 (813)
Q Consensus 269 ~~l~~~l~~~~~ae~-----~g~~~~lgaf~aGL~l~~~~--~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~ 341 (813)
+.+.+.+.+.++++. .++++.+=|.+.|+++.|.. +..+....-++ +....++-+=-+..|+++++.++...
T Consensus 9 l~~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~-f~~k~lLr~gIVLlG~~l~~~~i~~~ 87 (335)
T TIGR00698 9 QMALILLLAGAAGSIINLADPALSALFLAILLGMVAGNTIYPQRDEEKKRGVL-FAKPFLLRIGITLYGFRLTFPYIADV 87 (335)
T ss_pred HHHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhccccccchhhccchHH-HHHHHHHHHHHHHHCccccHHHHHHh
Confidence 344444555555553 47888888999999988722 22222222233 33456666777889999999988652
Q ss_pred hhHHHHHHHHHHHHHHHHHH-HHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHH
Q 003517 342 TSWGLLLLVILNACFGKIVG-TVVVAWSCKVPLRESLALGFIMNTKGLVELIVL 394 (813)
Q Consensus 342 ~~~~~~~~ii~~~~~~K~~~-~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~ 394 (813)
.+. .+.+.+.....-+.. .++..+.+|++++.+..+|..-+-=|.-+++..
T Consensus 88 -G~~-~l~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~ 139 (335)
T TIGR00698 88 -GPN-EIVADTLILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAI 139 (335)
T ss_pred -hHH-HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHh
Confidence 222 222223333334444 444458999999999998887776676544433
No 86
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=94.68 E-value=0.83 Score=55.06 Aligned_cols=70 Identities=14% Similarity=0.204 Sum_probs=50.4
Q ss_pred HHhhHHHHHHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHhhhhHH
Q 003517 318 SGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWS--CKVPLRESLALGFIMNTKGLV 389 (813)
Q Consensus 318 ~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~--~~~~~re~~~lgl~l~~kG~v 389 (813)
..+.+.+-.+..|++++...+.. .|..+..+++.+...-++++.+.+++ .+++|..++.+|.++++-.-+
T Consensus 75 teIvL~I~LFa~Gl~L~~~~Lrr--~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 75 SRILLCLQVFAVSVELPRKYMLK--HWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 56777888888999999998876 45555444444444455555555543 499999999999999887743
No 87
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=94.59 E-value=0.27 Score=57.98 Aligned_cols=81 Identities=16% Similarity=0.280 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHH-hcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChh
Q 003517 41 ICLVVAFTRFLAFL-LKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIK 119 (813)
Q Consensus 41 i~lil~~~~~~~~l-~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~ 119 (813)
+.+++.++++++.+ .+.+++-.+.|-+++|+++|-.... . -+.+.++|+++|+|.+|++.-+.
T Consensus 15 lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~~---------i-------~~~v~~~gl~lFvy~vG~~~Gp~ 78 (562)
T TIGR03802 15 LFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGIQ---------I-------DPGVKAVFFALFIFAIGYEVGPQ 78 (562)
T ss_pred HHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCCC---------C-------ChHHHHHHHHHHHHHhhhccCHH
Confidence 34444445555554 4556777788999999999953221 1 12377899999999999999998
Q ss_pred HHHhcchhhHHHHHHHHH
Q 003517 120 SILRTGKKSLGIALAGIT 137 (813)
Q Consensus 120 ~l~~~~~~~~~ia~~~~~ 137 (813)
-++.-+|+.+.+.+.+++
T Consensus 79 Ff~~l~~~g~~~~~~a~~ 96 (562)
T TIGR03802 79 FFASLKKDGLREIILALV 96 (562)
T ss_pred HHHHHHhccHHHHHHHHH
Confidence 877655554444444443
No 88
>PRK03818 putative transporter; Validated
Probab=94.54 E-value=1.1 Score=52.79 Aligned_cols=127 Identities=15% Similarity=0.257 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHH-hcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccCh
Q 003517 40 QICLVVAFTRFLAFL-LKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDI 118 (813)
Q Consensus 40 ~i~lil~~~~~~~~l-~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~ 118 (813)
-+.+.+.++.+++.+ ++.+++- +.|-+++|+++|-.. . . ...-. .......+.++|+.+|+|.+|++.-+
T Consensus 10 ~l~l~i~lG~~lG~i~i~g~~LG-~~g~L~~gl~~G~~~--~--~-~~~~~---~~~~~~~~~~~gl~lFv~~vGl~~Gp 80 (552)
T PRK03818 10 ILALVAVVGLWIGNIKIRGVGLG-IGGVLFGGIIVGHFV--S--Q-FGLTL---DSDMLHFIQEFGLILFVYTIGIQVGP 80 (552)
T ss_pred HHHHHHHHHHhhcceEECCCccc-cHHHHHHHHHHhccc--c--c-cCccc---ChHHHHHHHHHHHHHHHHHHhhcccH
Confidence 344444555555543 3334444 488999999999421 0 0 00001 23456779999999999999999998
Q ss_pred hHHH---hcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHH-HHhhccHHHHHHHHH
Q 003517 119 KSIL---RTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGV-SLSITAFPVLARILA 184 (813)
Q Consensus 119 ~~l~---~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~ 184 (813)
..+. +.+.+...+++.-.+++.++++.+.++++ .+ . ....|+ +=+.|++|.+....+
T Consensus 81 ~f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~---~~~~G~~aGa~T~tp~l~aa~~ 141 (552)
T PRK03818 81 GFFSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFG----IP--L---PVMLGIFSGAVTNTPALGAGQQ 141 (552)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC----CC--H---HHHHHHhhccccccHHHHHHHH
Confidence 7665 44555555666555666666555433332 12 1 233333 335677776665544
No 89
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=94.39 E-value=1.1 Score=55.65 Aligned_cols=43 Identities=9% Similarity=0.017 Sum_probs=29.7
Q ss_pred ccceeEEEecCCCcChHHHHHHHHHHh--cCCCeEEEEEEeecCC
Q 003517 621 EVSYSVVVPFFGGLDDCEALAYGMRMA--EHPGIKLTVVKFVAPK 663 (813)
Q Consensus 621 ~~~~~i~v~f~GG~ddreAL~~a~rma--~~~~v~ltvvr~~~~~ 663 (813)
++..||++.+-+-.+-+..+.++.-.. +.+...+.++|+++-.
T Consensus 456 ~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~ 500 (832)
T PLN03159 456 DAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELT 500 (832)
T ss_pred CCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeec
Confidence 445799888876555566677765543 3456899999998643
No 90
>COG2855 Predicted membrane protein [Function unknown]
Probab=93.55 E-value=13 Score=40.34 Aligned_cols=86 Identities=19% Similarity=0.208 Sum_probs=58.6
Q ss_pred hcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHH
Q 003517 55 LKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALA 134 (813)
Q Consensus 55 ~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~ 134 (813)
....++|..+--|+.||++|.. ...+.- .. ..-...-..+-++|++ +.|.+++++++...+.+.+.+-..
T Consensus 32 ~~~~~l~al~lAIllGi~l~~l--~~~~~~---~~-~GI~fs~k~LLr~gIv----LlG~~ltl~~i~~~G~~~v~~~~~ 101 (334)
T COG2855 32 SIHLGLSALTLAILLGILLGIL--PQIPAQ---TS-AGITFSSKKLLRLGIV----LLGFRLTLSDIADVGGSGVLIIAI 101 (334)
T ss_pred hhhcCchHHHHHHHHHHHHhcc--ccchhh---hc-cchhhhHHHHHHHHHH----HHcceeeHHHHHHcCccHHHHHHH
Confidence 4457799999999999999932 222210 00 0111233446666766 468899999999999999888887
Q ss_pred HHHHHHHHHHHHHHHH
Q 003517 135 GITLPFALGIGTSFVL 150 (813)
Q Consensus 135 ~~~~~~~~~~~~~~~l 150 (813)
.+..++++++.++.++
T Consensus 102 ~l~~t~~~~~~lg~~l 117 (334)
T COG2855 102 TLSSTFLFAYFLGKLL 117 (334)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 7777777776666544
No 91
>PRK04972 putative transporter; Provisional
Probab=93.21 E-value=0.65 Score=54.76 Aligned_cols=119 Identities=24% Similarity=0.358 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHH-hcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChh
Q 003517 41 ICLVVAFTRFLAFL-LKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIK 119 (813)
Q Consensus 41 i~lil~~~~~~~~l-~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~ 119 (813)
+.+.+.+..+++.+ ++++++-...|-+++|+++|-.... .| ..+.++|+.+|+|.+|++.-+.
T Consensus 17 lf~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~~~---------~~-------~~~~~~gl~lF~~~vG~~~Gp~ 80 (558)
T PRK04972 17 LFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFS---------IN-------TDALNLGFMLFIFCVGVEAGPN 80 (558)
T ss_pred HHHHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCCCC---------CC-------hHHHHHHHHHHHHHHhhhhhHH
Confidence 44455555555555 5667777788999999999953221 11 1245899999999999999987
Q ss_pred HHH---hcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHH-HHhhccHHHHHHHHH
Q 003517 120 SIL---RTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGV-SLSITAFPVLARILA 184 (813)
Q Consensus 120 ~l~---~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~ 184 (813)
-+. +.+.+...+++...++++++++.++++++ .+. ....|+ +=+.|++|.+.....
T Consensus 81 F~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~---~~~~G~~aGa~T~tp~l~~a~~ 140 (558)
T PRK04972 81 FFSIFFRDGKNYLMLALVMVGSALVIALGLGKLFG------WDI---GLTAGMLAGSMTSTPVLVGAGD 140 (558)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC------CCH---HHHHHHhhccccCcHHHHHHHH
Confidence 664 44555555666555666555555444432 221 122332 335666666665544
No 92
>PRK10490 sensor protein KdpD; Provisional
Probab=92.98 E-value=0.5 Score=59.16 Aligned_cols=124 Identities=14% Similarity=0.092 Sum_probs=81.6
Q ss_pred ccceeEEEeecCCChhhHHHHHHhhccCCCCCceEEEEEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHHHHHHHH
Q 003517 451 TEFRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEA 530 (813)
Q Consensus 451 ~elriLv~v~~~~~v~~li~Ll~~~~~~~~s~~~v~~LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 530 (813)
..-|||||+.+..+...+++-+.-++.. .+...+++|+.....+..+ ....+++.+.++
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~--~~a~~~~l~V~~~~~~~~~------------------~~~~~~l~~~~~- 307 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAAR--LGSVWHAVYVETPRLHRLP------------------EKKRRAILSALR- 307 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHh--cCCCEEEEEEecCCcCcCC------------------HHHHHHHHHHHH-
Confidence 4568999999999999999888877754 5677999998642111100 022334445554
Q ss_pred hhhcCceEEEeeEeeccCCChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccCC-CceEEEe
Q 003517 531 YQQLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAP-CSVGIFV 607 (813)
Q Consensus 531 ~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~ap-CsVgIlv 607 (813)
+++.-+..+... ..+++.+.|.+.|++++++.||||=+++.++ +. ..++.+++++++| -+|-|+-
T Consensus 308 lA~~lGa~~~~~----~~~dva~~i~~~A~~~~vt~IViG~s~~~~~---~~-----~~s~~~~l~r~~~~idi~iv~ 373 (895)
T PRK10490 308 LAQELGAETATL----SDPAEEKAVLRYAREHNLGKIIIGRRASRRW---WR-----RESFADRLARLGPDLDLVIVA 373 (895)
T ss_pred HHHHcCCEEEEE----eCCCHHHHHHHHHHHhCCCEEEECCCCCCCC---cc-----CCCHHHHHHHhCCCCCEEEEe
Confidence 444322223211 3368999999999999999999998765433 10 1145778999998 5666653
No 93
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=92.90 E-value=0.74 Score=44.57 Aligned_cols=114 Identities=18% Similarity=0.189 Sum_probs=64.0
Q ss_pred CChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHHhcch----hhHHHHHHH
Q 003517 60 QPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGK----KSLGIALAG 135 (813)
Q Consensus 60 ~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~----~~~~ia~~~ 135 (813)
+-...|-+++|+++|- +++..+..-. .| ......+.++|+.+|++.+|++--.+.+..-.+ ....++..-
T Consensus 21 LG~~~G~L~vgL~~G~--~~~~~p~~~~-~p---~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v 94 (154)
T TIGR01625 21 LGNAGGVLFVGLLLGH--FGATGPLTWY-IP---FSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALI 94 (154)
T ss_pred ecccHHHHHHHHHHHh--ccccCCccee-cC---hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHH
Confidence 3337789999999995 3332221111 11 245677999999999999999999876654333 223333333
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHH-HHhhccHHHHHHHHHHcC
Q 003517 136 ITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGV-SLSITAFPVLARILAELK 187 (813)
Q Consensus 136 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~el~ 187 (813)
.++|.+++..+.. +.+ +.+. ....|+ +=+.|++|.+....+..+
T Consensus 95 ~~~~~~~~~~~~~---~~~--~~~~---~~~~G~~aGa~T~tpaL~aa~~~~~ 139 (154)
T TIGR01625 95 TVVPTLLVAVALI---KLL--RINY---ALTAGMLAGATTNTPALDAANDTLR 139 (154)
T ss_pred HHHHHHHHHHHHH---HHh--CCCH---HHHHHHHhccccChHHHHHHHHHhc
Confidence 3344433333332 222 1221 234444 346788887776655443
No 94
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=92.84 E-value=1.2 Score=52.31 Aligned_cols=115 Identities=18% Similarity=0.301 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCchH--HHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHH
Q 003517 270 TLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAG--VLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLL 347 (813)
Q Consensus 270 ~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~~~--~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~ 347 (813)
.++.+.+...+++.++++..++-+++|+++... +... .+.. + ....+++|......|+++|...+.. .+..+
T Consensus 6 l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~-~~~~~~~~~~--~-~~~~~~Lp~lLF~~g~~~~~~~l~~--~~~~i 79 (525)
T TIGR00831 6 LVMLATAVAVTVKFIRLPYPIALILAGLLLGLA-GLLPEVPLDR--E-IVLFLFLPPLLFEAAMNTDLRELRE--NFRPI 79 (525)
T ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhc-cccCCCCCCH--H-HHHHHHHHHHHHHHHhcCCHHHHHH--HHHHH
Confidence 334444445566667777777777777776521 1110 0111 1 1245788888899999999998876 33333
Q ss_pred HHHHHHHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHH
Q 003517 348 LLVILNACFG-KIVGTVVVAWSCKVPLRESLALGFIMNTKGLVE 390 (813)
Q Consensus 348 ~~ii~~~~~~-K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~ 390 (813)
..+.+...+. -.+.++...+..++|+..++.+|.++++...+.
T Consensus 80 ~~la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpva 123 (525)
T TIGR00831 80 ALIAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVA 123 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHH
Confidence 3333333322 233333344467999999999999998887654
No 95
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=92.08 E-value=1.2 Score=43.20 Aligned_cols=97 Identities=18% Similarity=0.201 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhcccCCC--hhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHH
Q 003517 44 VVAFTRFLAFLLKPLRQP--RVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSI 121 (813)
Q Consensus 44 il~~~~~~~~l~~~l~~P--~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l 121 (813)
.+.++.+.+++++++|+| .++|-++++.++.- .|..+ . ..-..+.+++.+++--.+|.+++.+.+
T Consensus 3 ~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~--~~~~~-----~------~~P~~~~~~~qviiG~~iG~~f~~~~l 69 (156)
T TIGR03082 3 LLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSL--AGGLE-----I------TLPPWLLALAQVVIGILIGSRFTREVL 69 (156)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHh--cCCcc-----C------CCCHHHHHHHHHHHHHHHHccCCHHHH
Confidence 456677888999999988 66677776666552 22111 0 112246667777888899999999999
Q ss_pred HhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003517 122 LRTGKKSLGIALAGITLPFALGIGTSFVLRSTV 154 (813)
Q Consensus 122 ~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~ 154 (813)
++..+... .++...++..+.+.+.++++.+..
T Consensus 70 ~~~~~~~~-~~l~~~~~~l~~~~~~~~~l~~~~ 101 (156)
T TIGR03082 70 AELKRLWP-AALLSTVLLLALSALLAWLLARLT 101 (156)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87765443 344555566666777777776544
No 96
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=91.58 E-value=7 Score=37.95 Aligned_cols=121 Identities=16% Similarity=0.146 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHChh--HHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchh-hHHHH
Q 003517 271 LSMVLAASFVTDTIGIH--ALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGAT-SWGLL 347 (813)
Q Consensus 271 l~~~l~~~~~ae~~g~~--~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~-~~~~~ 347 (813)
+.+....+++.+.+|+. .++|+.+++.++.-.....-.+-+.+..+ -.-+.=..+|.+++...+.... .+...
T Consensus 4 ~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~~~~~----~qviiG~~iG~~f~~~~l~~~~~~~~~~ 79 (156)
T TIGR03082 4 LLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPWLLAL----AQVVIGILIGSRFTREVLAELKRLWPAA 79 (156)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHHHHHH----HHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 44455566677777775 67888888877753221111111222222 2223346789999877765533 33334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhc
Q 003517 348 LLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGK 398 (813)
Q Consensus 348 ~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~ 398 (813)
....+..++.-++.+++..+..++++.+++ +| ..|-|.-++.......
T Consensus 80 l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~-La--~~PGGl~~m~~~A~~~ 127 (156)
T TIGR03082 80 LLSTVLLLALSALLAWLLARLTGVDPLTAF-LA--TSPGGASEMAALAAEL 127 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HH--hCCchHHHHHHHHHHh
Confidence 444455556667778888999999999886 33 4788887777665543
No 97
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=91.58 E-value=13 Score=38.09 Aligned_cols=111 Identities=14% Similarity=0.196 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhh
Q 003517 306 AGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNT 385 (813)
Q Consensus 306 ~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~ 385 (813)
++.+..-+++-+-.+-.|+| =+...+.. .|..+..-++++.+.-++.+++.+++++.+..- . ..+.|
T Consensus 61 ~~~i~~lLgPAtVAlAvPLY-------kq~~~ik~--~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~--~--~Sl~P 127 (230)
T COG1346 61 GQWINFLLGPATVALAVPLY-------KQRHLIKR--HWKPILAGVLVGSVVAIISGVLLAKLFGLSPEL--I--LSLLP 127 (230)
T ss_pred cHHHHHHHHHHHHHHhhHHH-------HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH--H--HHhcc
Confidence 34444555555555666666 23444544 566666666666677788889999999987652 2 23578
Q ss_pred hhHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHhHHHHHHHh
Q 003517 386 KGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAI 429 (813)
Q Consensus 386 kG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~plv~~l 429 (813)
|....-+...+..+.|-+.+-+-...+++-++.+.+.+++.+++
T Consensus 128 kSvTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 128 KSVTTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred cccccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98888777788888887766555555555556566666666654
No 98
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=91.45 E-value=1.8 Score=51.22 Aligned_cols=116 Identities=20% Similarity=0.298 Sum_probs=72.4
Q ss_pred ccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHH---HhcchhhHHHHH
Q 003517 57 PLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSI---LRTGKKSLGIAL 133 (813)
Q Consensus 57 ~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l---~~~~~~~~~ia~ 133 (813)
++.+-...|-+++|+++|- +++..+.... .| ......+.++|+.+|++.+|++--++.+ ++.+.+...+++
T Consensus 412 p~~lg~~~g~l~~gl~~g~--~~~~~~~~~~-~p---~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~ 485 (562)
T TIGR03802 412 PLTLGTGGGALISGLVFGW--LRSKHPTFGN-IP---SSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGI 485 (562)
T ss_pred ceeehhhHHHHHHHHHHHH--hcccCCccee-cC---HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHH
Confidence 3444556788999999985 3322211101 22 3456679999999999999999887655 455566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHH-HHhhccHHHHHHHHHHc
Q 003517 134 AGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGV-SLSITAFPVLARILAEL 186 (813)
Q Consensus 134 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~el 186 (813)
.-.++|.++++.+++++. +.+ .....|+ +=+.|++|.+....+..
T Consensus 486 ~~~~~~~~~~~~~~~~~~-----~~~---~~~~~G~~aG~~t~t~~l~~a~~~~ 531 (562)
T TIGR03802 486 VVTILPLIITMLIGKYVL-----KYD---PALLLGALAGARTATPALGAVLERA 531 (562)
T ss_pred HHHHHHHHHHHHHHHHHh-----CCC---HHHHHHHhhccCCCcHHHHHHHHhc
Confidence 666677766666664332 111 2244443 34678888777665543
No 99
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=91.02 E-value=3.6 Score=45.90 Aligned_cols=116 Identities=11% Similarity=0.109 Sum_probs=67.8
Q ss_pred HHhhHHHHHHHhccccchhhhhchh-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH-HH-HhhhhHHHHHHH
Q 003517 318 SGLFLPLYFAASGLKTNVATIRGAT-SWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALG-FI-MNTKGLVELIVL 394 (813)
Q Consensus 318 ~~~~~plFF~~~G~~~dl~~l~~~~-~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lg-l~-l~~kG~v~l~~~ 394 (813)
.++++-.||..+|+..++..+..+. .......+.....+...+.....+..++.++.-.+..| .. .+-.|. +.++.
T Consensus 66 ~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~GGhGT-Aaa~g 144 (368)
T PF03616_consen 66 QDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFTGGHGT-AAAFG 144 (368)
T ss_pred HHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhccccccCCccH-HHHHH
Confidence 4567778999999999988776532 11112222222344556555666777888877665443 12 233444 33555
Q ss_pred Hhhccc-CCCChHHHHHH--HHHHHHHHHhHHHHHHHhhcccc
Q 003517 395 NIGKDR-KVLNDQAFAIL--VLMALFTTFITTPILMAIYKPAR 434 (813)
Q Consensus 395 ~~~~~~-~~i~~~~~~~l--vl~~vv~t~i~~plv~~l~~~~~ 434 (813)
....+. |.-+.....+. .+-.+...++..|+.+|+.|+.+
T Consensus 145 ~~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~~ 187 (368)
T PF03616_consen 145 PTFEELYGWEGATSVGMAAATFGLVVGGLIGGPIANWLIRKGK 187 (368)
T ss_pred HHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 555555 66554444333 23334456778899999887654
No 100
>COG2985 Predicted permease [General function prediction only]
Probab=89.81 E-value=2.2 Score=47.93 Aligned_cols=78 Identities=27% Similarity=0.407 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhhccChhH---HHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHH-HHhhccHH
Q 003517 102 NIGLLFFLFLVGLELDIKS---ILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGV-SLSITAFP 177 (813)
Q Consensus 102 ~lgl~~llF~~Gle~d~~~---l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~ 177 (813)
++|+++|.+.+|+|--+.. +|+.+++-..+++.- ++.+...++++++.+ +++.. +..|. +-+.|++|
T Consensus 62 ~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli----vi~~~~~a~~l~k~~--~~~~~---~~~Gm~sGAlTsTP 132 (544)
T COG2985 62 ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI----VIAALLLAWVLHKLF--GIDLG---LIAGMFSGALTSTP 132 (544)
T ss_pred hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHhhc--CCCHH---HhhhhhcccccCCc
Confidence 8999999999999998765 466777766665544 344445556665554 33321 22222 22345544
Q ss_pred HH---HHHHHHcCc
Q 003517 178 VL---ARILAELKL 188 (813)
Q Consensus 178 vv---~~iL~el~l 188 (813)
.. ..+|.|++.
T Consensus 133 ~L~aa~~~L~~lg~ 146 (544)
T COG2985 133 GLGAAQDILRELGA 146 (544)
T ss_pred hhHHHHHHHHhhcc
Confidence 44 456777773
No 101
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=89.81 E-value=2.7 Score=47.15 Aligned_cols=136 Identities=11% Similarity=0.179 Sum_probs=71.8
Q ss_pred HHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHH-HHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003517 289 LFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLY-FAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAW 367 (813)
Q Consensus 289 ~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plF-F~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~ 367 (813)
++...++|....+..-+.++-.+.+..++..+++|.+ |..++-..+...+.+ ++...+..++..+.-++..++..+
T Consensus 9 i~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 85 (385)
T PF03547_consen 9 IFLIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLS---LWFIPVFAFIIFILGLLLGFLLSR 85 (385)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555554445566777888899899999998 445554444544443 333333333333333555666777
Q ss_pred hcCCChHHHH--HHHHHHhhhhHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHhHHHHHHHhhcc
Q 003517 368 SCKVPLRESL--ALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAIYKP 432 (813)
Q Consensus 368 ~~~~~~re~~--~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~plv~~l~~~ 432 (813)
+++.+.++.. .++...+.-|.+.+-+....... +.....++..++..++.-++...+..+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~-----~~~~~~~~~~~~~~i~~~~~~~~l~~~ 147 (385)
T PF03547_consen 86 LFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGE-----RGVAYAIIFDVVNNIILWSLGYFLLES 147 (385)
T ss_pred hcCCCcccceEEEecccCCcchhhHHHHHHHHhcc-----hhhhhehHHHHhhHHHHHHHHHHhhcc
Confidence 7777776653 33333455555555555443332 222333333444444444444444443
No 102
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=89.49 E-value=28 Score=35.97 Aligned_cols=108 Identities=13% Similarity=0.117 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhH
Q 003517 309 LIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGL 388 (813)
Q Consensus 309 l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~ 388 (813)
+..-+.+-+-.+-+|+| -+...+.. .|..+.+-++++.+.-+.++++.++++|.+.. +-..|.+|..
T Consensus 67 l~~lLgPAtVALAvPLY-------~q~~~lk~--~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~----~~~Sl~pKSV 133 (232)
T PRK04288 67 ISFFLEPATIAFAIPLY-------KKRDVLKK--YWWQILGGIVVGSVCSVLIIYLVAKLIQLDNA----VMASMLPQAA 133 (232)
T ss_pred HHHHHHHHHHHHHHHHH-------HhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhHhh
Confidence 33334444445556655 23444443 45545555555666677888888999988764 2334689998
Q ss_pred HHHHHHHhhcccCCCChHHHHHHHHHHHHHHHhHHHHHHHh
Q 003517 389 VELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAI 429 (813)
Q Consensus 389 v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~plv~~l 429 (813)
..-+...+..+.|-+.+-.-...+++-++..++.+++.+++
T Consensus 134 TtPIAm~is~~iGG~psLtA~~ViitGi~Gai~g~~llk~~ 174 (232)
T PRK04288 134 TTAIALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLKLF 174 (232)
T ss_pred hHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 77777777777776654444444455555555555555543
No 103
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=89.04 E-value=40 Score=38.03 Aligned_cols=116 Identities=14% Similarity=0.085 Sum_probs=72.0
Q ss_pred HHhhHHHHHHHhccccchhhhhchhhH-HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH-HHH-hhhhHHHHHHH
Q 003517 318 SGLFLPLYFAASGLKTNVATIRGATSW-GLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALG-FIM-NTKGLVELIVL 394 (813)
Q Consensus 318 ~~~~~plFF~~~G~~~dl~~l~~~~~~-~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lg-l~l-~~kG~v~l~~~ 394 (813)
.++|+-+||..+|+..++..++.+... .....+..+..+...+.....+..++++..-+...| ..| +-+|.. .+..
T Consensus 66 ~~~lm~~fFatigLga~~~~l~~gg~~l~~~~~~~~~l~~~Qn~vGv~la~~~gl~P~~Gll~gsi~~~GGHGTA-aA~g 144 (398)
T TIGR00210 66 RDPLMLIFFTTIGLSANFKSLLKGGKPLLIFLATAVGFLVIQNAVGIGMASLLGQAPLMGLLAGSITLSGGHGTG-AAWS 144 (398)
T ss_pred HHHHHHHHHHHhhhcCChHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhhCccCCCCCcHH-HHHH
Confidence 367888999999999999887653221 112222233456677777777789999998777632 222 445553 3444
Q ss_pred Hhhcc-cCCCChHHHHHH--HHHHHHHHHhHHHHHHHhhcccc
Q 003517 395 NIGKD-RKVLNDQAFAIL--VLMALFTTFITTPILMAIYKPAR 434 (813)
Q Consensus 395 ~~~~~-~~~i~~~~~~~l--vl~~vv~t~i~~plv~~l~~~~~ 434 (813)
....+ .|.-+.....+. .+-.+..+++..|+++++.++.+
T Consensus 145 ~~f~e~~G~~~a~~lgla~AT~GLv~g~liGgpi~~~lirk~~ 187 (398)
T TIGR00210 145 PVFYDNYGFRNATEIAIACATFGLVFGGIIGGPVAKFLIIRNK 187 (398)
T ss_pred HHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44434 466555443332 34455667788899999776543
No 104
>PRK04972 putative transporter; Provisional
Probab=87.39 E-value=5.5 Score=47.04 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHhcc-----cCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhc
Q 003517 41 ICLVVAFTRFLAFLLKP-----LRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLE 115 (813)
Q Consensus 41 i~lil~~~~~~~~l~~~-----l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle 115 (813)
+++-++++.+++.+-=+ +++-.--|.+++|+++|- +++..+.... .| .....++.++|+.+|+..+|+.
T Consensus 386 ~~~Gi~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~--~~~~~~~~~~-~p---~~a~~~l~~~GL~lFla~vGl~ 459 (558)
T PRK04972 386 FCAFFIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGF--LRANHPTFGY-IP---QGALNMVKEFGLMVFMAGVGLS 459 (558)
T ss_pred HHHHHHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHh--ccccCCCcee-eC---HHHHHHHHHHhHHHHHHHHHHh
Confidence 34444455555554333 334445679999999994 3333322111 22 3456789999999999999998
Q ss_pred cChhHH---HhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHH-HHHhhccHHHHHHHHHHc
Q 003517 116 LDIKSI---LRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMG-VSLSITAFPVLARILAEL 186 (813)
Q Consensus 116 ~d~~~l---~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg-~~ls~Ts~~vv~~iL~el 186 (813)
--.+.+ ++.+.+.+.+++.-.++|.++++.+++++.. .+ ....+| ++=+.|++|......+..
T Consensus 460 aG~~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k-----~~---~~~~~G~~aG~~t~~~~l~~~~~~~ 526 (558)
T PRK04972 460 AGSGINNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVLR-----MN---RALLFGAIMGARTCAPAMEIISDTA 526 (558)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CC---HHHHHHHHhCCCCCcHHHHHHHhhc
Confidence 876544 4556666677777777777777777754432 11 224444 345678888776654443
No 105
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=87.19 E-value=15 Score=40.14 Aligned_cols=134 Identities=17% Similarity=0.211 Sum_probs=77.7
Q ss_pred cCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHH
Q 003517 58 LRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGIT 137 (813)
Q Consensus 58 l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ 137 (813)
++.|.+++.+ +|+++...... .|..-.+.++.+++...-+-||..|+.++.+.+++..+......+.-.+
T Consensus 180 ~~nP~iia~i-~Gl~~~~~~i~---------lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~kli 249 (321)
T TIGR00946 180 IKFPPLWAPL-LSVILSLVGFK---------MPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFL 249 (321)
T ss_pred HhCCChHHHH-HHHHHHHHhhc---------CcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHH
Confidence 5778888755 45776643221 3333467899999999999999999999998887776666655555554
Q ss_pred H-HHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHHH
Q 003517 138 L-PFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLA 213 (813)
Q Consensus 138 ~-~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~ 213 (813)
+ |.+. +++...+. .+ ....-..+.++.+.+++...++.+.--.+. +.+-+...++-+++++.+.
T Consensus 250 l~P~i~-~~~~~~~~----l~----~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~---~~aa~~v~~sT~ls~~tlp 314 (321)
T TIGR00946 250 VQPAVM-AGISKLIG----LR----GLELSVAILQAALPGGAVAAVLATEYEVDV---ELASTAVTLSTVLSLISLP 314 (321)
T ss_pred HHHHHH-HHHHHHhC----CC----hHHHHHHHHHHcCChhhHHHHHHHHhCCCH---HHHHHHHHHHHHHHHHHHH
Confidence 3 5443 33333332 11 122344445555555555666554331333 4444444445555544443
No 106
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=87.12 E-value=8.5 Score=38.36 Aligned_cols=106 Identities=20% Similarity=0.318 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHhccc---CCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHH-------HHHH
Q 003517 41 ICLVVAFTRFLAFLLKPL---RQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLL-------FFLF 110 (813)
Q Consensus 41 i~lil~~~~~~~~l~~~l---~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~-------~llF 110 (813)
+.++-+..++.+++.||+ |++.----|+.|+++.-.+ |....- .+....+..++-+|++ |-.-
T Consensus 18 Fa~vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~g-G~~TgG------~kGlaDi~lfsGiglmGGaMlRDfAIv 90 (254)
T TIGR00808 18 FAVVGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVG-GVYTGG------EKGLADIAIFGGFGLMGGAMLRDLAIV 90 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHc-ccccCC------ccccchhhhhcchhhhhhHHHHHHHHH
Confidence 333334444445555554 5666666778888876321 111000 1223334444444443 2234
Q ss_pred HHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003517 111 LVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRST 153 (813)
Q Consensus 111 ~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~ 153 (813)
....|.|.+++||.+..-..--+.+.++||+.|..+++.+++.
T Consensus 91 aTAf~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY~ 133 (254)
T TIGR00808 91 ATAFEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAFGYR 133 (254)
T ss_pred HHhhcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6678999999999999888777889999999999999999764
No 107
>PRK03818 putative transporter; Validated
Probab=86.91 E-value=5.4 Score=47.08 Aligned_cols=106 Identities=23% Similarity=0.305 Sum_probs=67.4
Q ss_pred hHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHHh----cchhhHHHHHHHHHH
Q 003517 63 VIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILR----TGKKSLGIALAGITL 138 (813)
Q Consensus 63 ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~----~~~~~~~ia~~~~~~ 138 (813)
.-|-+++|+++|- ++...+... -.| ......+.++|+.+|+..+|++--...+.. .+.+...+++.-.++
T Consensus 403 ~~G~L~~gl~~g~--~~~~~~~~~-~~p---~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~ 476 (552)
T PRK03818 403 AGGPLIVALILGR--IGSIGKLYW-FMP---PSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAV 476 (552)
T ss_pred chHHHHHHHHHHh--ccCCCCcee-ecC---HHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHH
Confidence 4678999999994 333222111 122 245667899999999999999988776654 345566666777777
Q ss_pred HHHHHHHHHHHHHHhhhcCCChhHHHHHHHH-HHhhccHHHHHHH
Q 003517 139 PFALGIGTSFVLRSTVLKGANQAPLLVFMGV-SLSITAFPVLARI 182 (813)
Q Consensus 139 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~i 182 (813)
|.++++.++.++.. .+ ....+|. +=+.|++|.+...
T Consensus 477 ~~~~~~~~~~~~~~-----~~---~~~~~G~~aG~~t~tp~l~~a 513 (552)
T PRK03818 477 PLLIVGILARMLAK-----MN---YLTLCGMLAGSMTDPPALAFA 513 (552)
T ss_pred HHHHHHHHHHHHHc-----CC---HHHHHHHHhccCCCcHHHHHH
Confidence 77777766544321 11 2244443 4467888876554
No 108
>PRK10490 sensor protein KdpD; Provisional
Probab=86.76 E-value=2.9 Score=52.47 Aligned_cols=124 Identities=10% Similarity=0.024 Sum_probs=79.9
Q ss_pred cceeEEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEeecCCCCCcccCCCCCCcccccccCCCCccccHHHHHHHHHhh
Q 003517 622 VSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSI 701 (813)
Q Consensus 622 ~~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 701 (813)
...||+|...|+|..+..+..|.|||..-++.++++++.+++.... ..+..+++. +.+ ++.++
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~---------------~~~~~~~l~-~~~-~lA~~ 311 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRL---------------PEKKRRAIL-SAL-RLAQE 311 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcC---------------CHHHHHHHH-HHH-HHHHH
Confidence 3468999999999999999999999999999999999975432110 011111121 222 23333
Q ss_pred hccCCCCeEEEEEEecChHHHHHHHhccCCCcEEEEccCCCCCCCCCCccccccCccccchhhhhcCCCCCcccEEEE
Q 003517 702 ASKNQESITLEERLVESSQEIAGVLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVL 779 (813)
Q Consensus 702 ~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~~DLviVGr~~~~~gl~~w~~~e~~~eLG~igd~las~d~~~~~SvLvv 779 (813)
. + ..+....-+|..+++.......+.+.+|+|+++ ..+. | --|-+-|-|.... ...-|.||
T Consensus 312 l--G---a~~~~~~~~dva~~i~~~A~~~~vt~IViG~s~-~~~~--~-------~~~s~~~~l~r~~--~~idi~iv 372 (895)
T PRK10490 312 L--G---AETATLSDPAEEKAVLRYAREHNLGKIIIGRRA-SRRW--W-------RRESFADRLARLG--PDLDLVIV 372 (895)
T ss_pred c--C---CEEEEEeCCCHHHHHHHHHHHhCCCEEEECCCC-CCCC--c-------cCCCHHHHHHHhC--CCCCEEEE
Confidence 2 2 223444456677666665555559999999997 4332 3 1356778777543 45678888
No 109
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=85.86 E-value=8.6 Score=38.67 Aligned_cols=49 Identities=22% Similarity=0.348 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHH
Q 003517 347 LLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLN 395 (813)
Q Consensus 347 ~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~ 395 (813)
...+-+..+++-++++++.+++.++|++|++.+|..++.-..-+..+..
T Consensus 58 ~Llipl~tIlGSllgg~l~~~ll~~~~~~~lav~sG~GwYSlsg~~i~~ 106 (191)
T PF03956_consen 58 ALLIPLATILGSLLGGLLASLLLGLSLKESLAVASGFGWYSLSGVLITQ 106 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccCcHHHhHHHHHHh
Confidence 4455566678899999999999999999999999888777665555443
No 110
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=85.40 E-value=4.2 Score=48.80 Aligned_cols=125 Identities=16% Similarity=0.164 Sum_probs=79.1
Q ss_pred CccceeEEEeecCCChhhHHHHHHhhccCCCCCceEEEEEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHHHHHHH
Q 003517 450 ETEFRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFE 529 (813)
Q Consensus 450 ~~elriLv~v~~~~~v~~li~Ll~~~~~~~~s~~~v~~LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~af~ 529 (813)
...-|||||+....+...+++-+.-++.. .....+++|+..-..+..+. .+.+++...++
T Consensus 246 ~~~e~ilvcI~~~~~~e~liR~a~RlA~~--~~a~~~av~v~~~~~~~~~~------------------~~~~~l~~~~~ 305 (890)
T COG2205 246 AARERILVCISGSPGSEKLIRRAARLASR--LHAKWTAVYVETPELHRLSE------------------KEARRLHENLR 305 (890)
T ss_pred cccceEEEEECCCCchHHHHHHHHHHHHH--hCCCeEEEEEeccccccccH------------------HHHHHHHHHHH
Confidence 44579999999999989999887777654 45557888875422111110 22334444444
Q ss_pred HhhhcCceEEEeeEeeccCCChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccCC-CceEE
Q 003517 530 AYQQLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAP-CSVGI 605 (813)
Q Consensus 530 ~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~ap-CsVgI 605 (813)
--++.+. .+. +..+ .++.+.|.+.|+++++.-||+|=+++.++...+. +.+.+++++++| -+|-|
T Consensus 306 Lae~lGa-e~~--~l~~--~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~~------~~l~~~L~~~~~~idv~i 371 (890)
T COG2205 306 LAEELGA-EIV--TLYG--GDVAKAIARYAREHNATKIVIGRSRRSRWRRLFK------GSLADRLAREAPGIDVHI 371 (890)
T ss_pred HHHHhCC-eEE--EEeC--CcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHhc------ccHHHHHHhcCCCceEEE
Confidence 3344433 111 1222 6899999999999999999999887665542221 345668888877 34433
No 111
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=84.95 E-value=5.7 Score=42.12 Aligned_cols=131 Identities=11% Similarity=0.206 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCC-c--hHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhh
Q 003517 267 VCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGP-F--AGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATS 343 (813)
Q Consensus 267 ~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~-~--~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~ 343 (813)
...-+..+|+.+.+++.+.++|..|-.++|.+.....| + .+.+...+..+. .-+....+|+++.+.++..-+.
T Consensus 11 iv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelG----ViLLmFgvGLhfslkdLLavk~ 86 (408)
T COG4651 11 IVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELG----VILLMFGVGLHFSLKDLLAVKA 86 (408)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhh----HHHHHHhcchheeHHHHhhHHH
Confidence 45567788888999999999999999999999863333 2 345555666653 2234467899998887765444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCh
Q 003517 344 WGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLND 405 (813)
Q Consensus 344 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~ 405 (813)
|.+-..+.-++ .-..-.+..++..|+++...+..|+.++....+ ++.....+++.++.
T Consensus 87 iAipgAl~qia--~at~lg~gL~~~lgws~~~glvfGlaLS~aSTV--vllraLqEr~lidt 144 (408)
T COG4651 87 IAIPGALAQIA--LATLLGMGLSSLLGWSFGTGIVFGLALSVASTV--VLLRALEERQLIDT 144 (408)
T ss_pred HhcchHHHHHH--HHHHHHhHHHHHcCCCcccceeeeehhhhHHHH--HHHHHHHHhccccc
Confidence 43222111111 111122345677889999999999988877654 33333334455543
No 112
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=84.56 E-value=10 Score=41.52 Aligned_cols=102 Identities=18% Similarity=0.169 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCh--hHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhcc
Q 003517 39 LQICLVVAFTRFLAFLLKPLRQPR--VIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLEL 116 (813)
Q Consensus 39 ~~i~lil~~~~~~~~l~~~l~~P~--ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~ 116 (813)
.++.+++.++.+.+++++++|+|. ++|-++++.++.-.... + .-.| . .+..++.+++--.+|.++
T Consensus 155 ~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~--~----~~~P----~---~l~~~aqv~iG~~iG~~f 221 (318)
T PF05145_consen 155 LWLALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGP--S----FSLP----P---WLVNAAQVLIGASIGSRF 221 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCC--C----CCCC----H---HHHHHHHHHHHHHHHccc
Confidence 345666677888999999999875 56666666655532111 1 1112 2 355556666667999999
Q ss_pred ChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003517 117 DIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTV 154 (813)
Q Consensus 117 d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~ 154 (813)
+.+.+++..| .+..++...++-++++.++++.+....
T Consensus 222 ~~~~l~~~~~-~~~~~l~~~~~~l~~~~~~a~~l~~~~ 258 (318)
T PF05145_consen 222 TRETLRELRR-LLPPALLSTLLLLALCALFAWLLSRLT 258 (318)
T ss_pred cHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887654 444555555555566666666665443
No 113
>PRK10711 hypothetical protein; Provisional
Probab=84.55 E-value=41 Score=34.81 Aligned_cols=83 Identities=11% Similarity=0.161 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHhH
Q 003517 343 SWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFIT 422 (813)
Q Consensus 343 ~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~ 422 (813)
.|..+.+-+.++.+.-++.+++.++.++.+..- -..|.+|....=+...+..+.|-+.+-.-...+++-++-.++.
T Consensus 87 ~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~----~~Sl~pkSVTtPIAm~is~~iGG~~sLta~~ViitGi~Ga~~g 162 (231)
T PRK10711 87 RWKSIISICFIGSVVAMVTGTAVALWMGATPEI----AASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFG 162 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHH----HHHHhhhhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 444444445556666677888889999886542 2336889987777777777776654433333334444444555
Q ss_pred HHHHHHh
Q 003517 423 TPILMAI 429 (813)
Q Consensus 423 ~plv~~l 429 (813)
+++.+++
T Consensus 163 ~~llk~~ 169 (231)
T PRK10711 163 HTLLNAM 169 (231)
T ss_pred HHHHHHc
Confidence 5555543
No 114
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=83.99 E-value=3.4 Score=44.42 Aligned_cols=110 Identities=23% Similarity=0.318 Sum_probs=67.0
Q ss_pred HHhhHHHHHHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhh
Q 003517 318 SGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIG 397 (813)
Q Consensus 318 ~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~ 397 (813)
++++=|+-|..+|..+|+..+... .+. .++-..+-++ ...++..+..+|++.+|+..+|.+=+.-|-.++.+.+..
T Consensus 68 ~~l~P~LIF~GIGAmtDFgpllan-P~~--~llGaaAQ~G-if~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~~L 143 (360)
T PF03977_consen 68 NGLFPPLIFMGIGAMTDFGPLLAN-PKT--LLLGAAAQFG-IFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSSKL 143 (360)
T ss_pred cchhhHHHHHHHhHHHhhHHHHhC-HHH--HHHHHHHHHh-HHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHHhh
Confidence 578888889999999999876542 221 2222223333 345677778889999999999987566666665544332
Q ss_pred c-c-cCCCChHHHHHHHHHHHHHHHhHHHHHHHhhccccc
Q 003517 398 K-D-RKVLNDQAFAILVLMALFTTFITTPILMAIYKPARK 435 (813)
Q Consensus 398 ~-~-~~~i~~~~~~~lvl~~vv~t~i~~plv~~l~~~~~~ 435 (813)
. + .+.+.-..|+-| -+.-.+-||+++.+-.+++|
T Consensus 144 Ap~LlgpIaVaAYsYM----aLvPiiqPpimklLttkkeR 179 (360)
T PF03977_consen 144 APHLLGPIAVAAYSYM----ALVPIIQPPIMKLLTTKKER 179 (360)
T ss_pred hHHHHHHHHHHHHHHH----HHHhhhhhHHHHHhcCHHHH
Confidence 1 1 012222223322 23356678888887765444
No 115
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=83.64 E-value=27 Score=39.85 Aligned_cols=71 Identities=25% Similarity=0.447 Sum_probs=49.7
Q ss_pred HhhHHHHHHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHhhhhHHHH
Q 003517 319 GLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSC--KVPLRESLALGFIMNTKGLVEL 391 (813)
Q Consensus 319 ~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~--~~~~re~~~lgl~l~~kG~v~l 391 (813)
.+++|+-....|+++|...+.. .|..+..+.....+...++......+. ++|+..++.+|.++++-.-+.+
T Consensus 64 ~l~l~ilLf~~g~~l~~~~l~~--~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v 136 (429)
T COG0025 64 VLFLAILLFAGGLELDLRELRR--VWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAV 136 (429)
T ss_pred HHHHHHHHHHhHhcCCHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhh
Confidence 6677777778899999998876 444444444444555555555555554 8899999999998888775543
No 116
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=83.46 E-value=58 Score=33.58 Aligned_cols=83 Identities=12% Similarity=0.159 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHhH
Q 003517 343 SWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFIT 422 (813)
Q Consensus 343 ~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~ 422 (813)
.|..+...+.++.+.-+..+++.++.+|.+.. ... .+.+|....-+...+..+.|-..+-.-...+++-++...+.
T Consensus 86 ~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~--i~~--Sl~pkSvTtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g 161 (226)
T TIGR00659 86 YWKEIILNVAVGSVIAIISGTLLALLLGLGPE--IIA--SLLPKSVTTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFG 161 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HHH--HhhhHHhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555566777888899998733 333 46899987767777777776654333333444444445555
Q ss_pred HHHHHHh
Q 003517 423 TPILMAI 429 (813)
Q Consensus 423 ~plv~~l 429 (813)
+++.+++
T Consensus 162 ~~ll~~~ 168 (226)
T TIGR00659 162 PMVLRYF 168 (226)
T ss_pred HHHHHHc
Confidence 5555543
No 117
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=83.46 E-value=10 Score=40.92 Aligned_cols=75 Identities=15% Similarity=0.250 Sum_probs=53.2
Q ss_pred hHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHH
Q 003517 63 VIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFAL 142 (813)
Q Consensus 63 ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~ 142 (813)
.+--++.|+++|...-+ .+ +.++.-..+++.++.|..|.++|++.+.+.+...+.+++..+.+++.+
T Consensus 169 lilpILiGmilGNld~~-~~------------~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~ 235 (312)
T PRK12460 169 ALLPLVLGMILGNLDPD-MR------------KFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFF 235 (312)
T ss_pred HHHHHHHHHHHhccchh-hH------------HHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 44557778888862111 11 222222334888899999999999999999999999999888888777
Q ss_pred HHHHHHHH
Q 003517 143 GIGTSFVL 150 (813)
Q Consensus 143 ~~~~~~~l 150 (813)
++.+..++
T Consensus 236 ~~~i~rll 243 (312)
T PRK12460 236 NIFADRLV 243 (312)
T ss_pred HHHHHHHh
Confidence 76666544
No 118
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=82.65 E-value=20 Score=39.28 Aligned_cols=112 Identities=20% Similarity=0.239 Sum_probs=67.3
Q ss_pred HHHHhhHHHHHHHhccccchhhhhchhhHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHH
Q 003517 316 MVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLV-ILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVL 394 (813)
Q Consensus 316 ~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~i-i~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~ 394 (813)
+.++++=|+-|..+|..+|+..+.... + ..++ -..+-+|- ..+++.+..+|++.+|+-.+|.+=+.-|-.++.+.
T Consensus 102 i~~gl~P~LIFlGIGAMtDFgpllanP-~--~~ll~gaaAQ~Gi-F~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~s 177 (399)
T TIGR03136 102 FSNSLVACILFFGIGAMSDISFILARP-W--ASITVALFAEMGT-FATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFAS 177 (399)
T ss_pred HhcccHHHHHHHhccHHhcchHHHhCh-H--HHHHHHHHHHhhH-HHHHHHHHHcCCCHHHhhHHhhcccCCccHHHHHH
Confidence 345788888999999999998765422 2 1111 12333332 34566677889999999999987566666665544
Q ss_pred Hhhc-c-cCCCChHHHHHHHHHHHHHHHhHHHHHHHhhccccc
Q 003517 395 NIGK-D-RKVLNDQAFAILVLMALFTTFITTPILMAIYKPARK 435 (813)
Q Consensus 395 ~~~~-~-~~~i~~~~~~~lvl~~vv~t~i~~plv~~l~~~~~~ 435 (813)
+... + .+.+.-..|+-| -+.-.+-||+++.+-.+++|
T Consensus 178 ~kLAp~Llg~IaVAAYsYM----aLVPiiqPpimklLttkkER 216 (399)
T TIGR03136 178 LILAKDLFVPISIIAYLYL----SLTYAGYPYLIKLLVPKKYR 216 (399)
T ss_pred HhhhhHhHHHHHHHHHHHH----HHHhcccchHHHhhcCHHHH
Confidence 3321 1 122222223332 23356678898887765444
No 119
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=82.37 E-value=6.7 Score=39.10 Aligned_cols=37 Identities=19% Similarity=0.314 Sum_probs=32.5
Q ss_pred eEEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEeec
Q 003517 625 SVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVA 661 (813)
Q Consensus 625 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~ 661 (813)
+|++.+.||.|+--++.++.+.++..+.++.++++..
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~ 37 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDH 37 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 5889999999999999999998877778889998853
No 120
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=82.03 E-value=0.42 Score=53.60 Aligned_cols=112 Identities=18% Similarity=0.319 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCch--HHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHHH
Q 003517 272 SMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFA--GVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLL 349 (813)
Q Consensus 272 ~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~~--~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ 349 (813)
+.+++...+.+.++++..+|-.++|+++... .+. +......+.+ ..+.+++.....|.++|...+.. .+.....
T Consensus 6 ~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~-~~~~~~~~~~~~~~l-~~i~l~~llF~~G~~~d~~~l~~--~~~~~~~ 81 (380)
T PF00999_consen 6 LLAFVAGILFRRLGIPSIIGYILVGIVLGPS-GLGLLEPDNPSFELL-AEIGLAFLLFEAGLELDIKELRR--NWRRALA 81 (380)
T ss_dssp -------------------------------------------S-SS-HHHHS--SSHHHHTTGGGG-------------
T ss_pred ehHHHHHHHHHHhCCCHHHHHHHheeehhhh-hhhhccchhhHHHHH-HHHHHHHHHHHHHHhhccccccc--ccccccc
Confidence 3344445578889999999999999999752 222 1112445555 67788888889999999998876 3333333
Q ss_pred HHHHHHHHHHHH-HHHHHH---hcCCChHHHHHHHHHHhhhh
Q 003517 350 VILNACFGKIVG-TVVVAW---SCKVPLRESLALGFIMNTKG 387 (813)
Q Consensus 350 ii~~~~~~K~~~-~~l~~~---~~~~~~re~~~lgl~l~~kG 387 (813)
..+..++.-++. ++.... ..++++.+++.+|..+++-.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts 123 (380)
T PF00999_consen 82 LGLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATS 123 (380)
T ss_dssp --------------------------------TTHHHHTT--
T ss_pred cccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhccc
Confidence 333333334443 444443 47889999999988876554
No 121
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=80.08 E-value=46 Score=36.98 Aligned_cols=116 Identities=13% Similarity=0.099 Sum_probs=69.5
Q ss_pred HHhhHHHHHHHhccccchhhhhchhh-HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH-HH-hhhhHHHHHHH
Q 003517 318 SGLFLPLYFAASGLKTNVATIRGATS-WGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGF-IM-NTKGLVELIVL 394 (813)
Q Consensus 318 ~~~~~plFF~~~G~~~dl~~l~~~~~-~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl-~l-~~kG~v~l~~~ 394 (813)
.+.|+-+||..+|+.-++..+..+.. ............+..-......+.+.+.++.-++..|- .| +..|. +.+..
T Consensus 68 ~~~fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~lgidpl~gllagsIsl~GGHGt-aAA~~ 146 (404)
T COG0786 68 QDVFMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLLGLDPLIGLLAGSISLVGGHGT-AAAWG 146 (404)
T ss_pred ccHHHHHHHHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHhcceeecCCCch-HHHHH
Confidence 67889999999999999988865321 11111111122233444455667778887776665532 22 33444 44666
Q ss_pred HhhcccCCCChHHHHHH--HHHHHHHHHhHHHHHHHhhcccc
Q 003517 395 NIGKDRKVLNDQAFAIL--VLMALFTTFITTPILMAIYKPAR 434 (813)
Q Consensus 395 ~~~~~~~~i~~~~~~~l--vl~~vv~t~i~~plv~~l~~~~~ 434 (813)
....+.|.-+.....+. .+-.+.-.++.+|+.+|+.++.+
T Consensus 147 ~~f~~~G~~~A~~va~A~ATfGlv~GgliGgpva~~li~k~~ 188 (404)
T COG0786 147 PTFEDLGAEGATEVAMASATFGLVAGGLIGGPVARWLIKKNK 188 (404)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHHhHhcCcHHHHHHHHhcC
Confidence 77777777665443332 23344445677899999886543
No 122
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=77.34 E-value=87 Score=32.15 Aligned_cols=82 Identities=16% Similarity=0.285 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHhH
Q 003517 343 SWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFIT 422 (813)
Q Consensus 343 ~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~ 422 (813)
.|..+...++++.+.-+..+++.++.+|.+.. ... .+.+|....-+...+..+.|-..+-.-...+++-++..++.
T Consensus 76 ~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~--~~~--Sl~pkSVTtpiAi~is~~iGG~~sLta~~VvitGi~Ga~~g 151 (215)
T PF04172_consen 76 NWIPILVGVLVGSLVSIFSAVLLARLLGLSPE--IIL--SLAPKSVTTPIAIEISEQIGGIPSLTAVFVVITGILGAVLG 151 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HHH--HHHHHHhhHHHHHHHHHHhCChHHHHHHHHHHHhhHHHHhH
Confidence 45545555556666667788888899988654 223 35789877766667776666554433333334444444555
Q ss_pred HHHHHH
Q 003517 423 TPILMA 428 (813)
Q Consensus 423 ~plv~~ 428 (813)
+++.++
T Consensus 152 ~~llk~ 157 (215)
T PF04172_consen 152 PPLLKL 157 (215)
T ss_pred HHHHhH
Confidence 555554
No 123
>TIGR00930 2a30 K-Cl cotransporter.
Probab=76.75 E-value=2.2e+02 Score=36.16 Aligned_cols=104 Identities=9% Similarity=0.122 Sum_probs=63.6
Q ss_pred cceeEEEeecCCChhhHHHHHHhhccCCCCCceEEEEEeeeccCcchHHHHHHHHhhCCCCCCCCCCCcchHHHHHHHHh
Q 003517 452 EFRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAY 531 (813)
Q Consensus 452 elriLv~v~~~~~v~~li~Ll~~~~~~~~s~~~v~~LhLvel~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 531 (813)
..++|+.+.+|++-+.+++++..+.. ... -..+.|+++-+.+... ++. ++..+..+.+
T Consensus 575 rPqiLvl~~~p~~~~~Ll~f~~~l~~--~~g-l~i~~~v~~~~~~~~~----~~~---------------~~~~~~~~~~ 632 (953)
T TIGR00930 575 RPQCLVLTGPPVCRPALLDFASQFTK--GKG-LMICGSVIQGPRLECV----KEA---------------QAAEAKIQTW 632 (953)
T ss_pred CCeEEEEeCCCcCcHHHHHHHHHhcc--CCc-EEEEEEEecCchhhhH----HHH---------------HHHHHHHHHH
Confidence 45899999999999999999999962 233 4455688875322111 101 0011111111
Q ss_pred hhcCceEEEeeEeeccCCChHHHHHHHHHh-----cCCcEEEecCCcccccCC
Q 003517 532 QQLSSVTVRPMTAISALSSIHEDICASAHR-----KRAALILLPFHKHQRLDG 579 (813)
Q Consensus 532 ~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e-----~~adlIIlp~h~~~~~~g 579 (813)
-+.. +++.+..+....++.+.+.++.+- .+.+.++++|.+.|+.+.
T Consensus 633 ~~~~--~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~ 683 (953)
T TIGR00930 633 LEKN--KVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAE 683 (953)
T ss_pred HHHh--CCCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhcc
Confidence 1112 222333333346899999998876 467999999998887554
No 124
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=73.91 E-value=15 Score=36.40 Aligned_cols=91 Identities=20% Similarity=0.271 Sum_probs=54.4
Q ss_pred eEEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEeecCCCCCcccCCCCCCcccccccCCCCccccHHHHHHHHHhhhcc
Q 003517 625 SVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSIASK 704 (813)
Q Consensus 625 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 704 (813)
+|++.+.||+|+-..|.+..++.+..+.+++++++...-. .+...+.+++.++.++.
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~---------------------~~s~~~~~~v~~~~~~~-- 57 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLR---------------------EESDEEAEFVEEICEQL-- 57 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STS---------------------CCHHHHHHHHHHHHHHT--
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCC---------------------cccchhHHHHHHHHHhc--
Confidence 5889999999999999999999999888999999975321 23345667888887765
Q ss_pred CCCCeEEEEEEecC-------hHHHHHH-----Hhcc---CCCcEEEEccCC
Q 003517 705 NQESITLEERLVES-------SQEIAGV-----LKSM---NKCNLFLVGRMA 741 (813)
Q Consensus 705 ~~~~v~y~e~~v~~-------~~e~~~~-----i~~~---~~~DLviVGr~~ 741 (813)
.+.+.-+..+. ..+.... +.+. .++|.++.|-+.
T Consensus 58 ---~i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~ 106 (182)
T PF01171_consen 58 ---GIPLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHL 106 (182)
T ss_dssp ---T-EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BH
T ss_pred ---CCceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcC
Confidence 24444333331 1222222 2222 228999999885
No 125
>COG2431 Predicted membrane protein [Function unknown]
Probab=73.69 E-value=82 Score=33.31 Aligned_cols=77 Identities=22% Similarity=0.336 Sum_probs=47.9
Q ss_pred hhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccC---hhHHH-hcchhhHHHHHHHHH
Q 003517 62 RVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELD---IKSIL-RTGKKSLGIALAGIT 137 (813)
Q Consensus 62 ~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d---~~~l~-~~~~~~~~ia~~~~~ 137 (813)
++.+..+.|+++|-..-.. + ...+...+..+.+++|.+|.++. ...-+ .-.|+.+..++...+
T Consensus 108 k~~~~vl~g~~~G~l~~~~--------~-----~~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Lnk~gl~l~~i~il 174 (297)
T COG2431 108 KLLGVVLLGLALGLLTGSF--------L-----NFPENASEYLLYLLLFLIGIQLGNSGISLRQVLLNKRGLILAFITLL 174 (297)
T ss_pred HHHHHHHHHHHHHHHhccc--------c-----cCchhHHHHHHHHHHHHHHHHhccccchhhhHHhccchHHHHHHHHH
Confidence 5677888888888432111 1 11445778899999999999987 22111 222666767776666
Q ss_pred HHHHHHHHHHHHHH
Q 003517 138 LPFALGIGTSFVLR 151 (813)
Q Consensus 138 ~~~~~~~~~~~~l~ 151 (813)
-..+-|...+.++.
T Consensus 175 ssliGG~iaa~~l~ 188 (297)
T COG2431 175 SSLIGGLIAAFLLD 188 (297)
T ss_pred HHHHHHHHHHHHHh
Confidence 56555555555443
No 126
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=73.28 E-value=4.1 Score=34.83 Aligned_cols=49 Identities=12% Similarity=0.032 Sum_probs=37.9
Q ss_pred ChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccCCCce
Q 003517 550 SIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSV 603 (813)
Q Consensus 550 ~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~apCsV 603 (813)
.+++.+.+.|++.+++.|+.|.|.....+..+.+. ....++.++++|+|
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~~-----~~~~~~~~~~~~~v 83 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAGRRLGAS-----ANVLVVIKGAGIPV 83 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhhhccCch-----hhhhhcccccCCce
Confidence 78899999999999999999999876655444320 12347889999986
No 127
>PRK09903 putative transporter YfdV; Provisional
Probab=72.93 E-value=61 Score=35.25 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=61.9
Q ss_pred cCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHHHH-
Q 003517 58 LRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGI- 136 (813)
Q Consensus 58 l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~- 136 (813)
++-|.+++.++ |+++.- +|. -.|..-.+.++.+++...-+-||..|..+....++.. ++.+...+.-.
T Consensus 171 ~~nP~iia~~~-gl~~~l--~~i-------~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~-~~~~~~~~~Kli 239 (314)
T PRK09903 171 AKEPVVWAPVL-ATILVL--VGV-------KIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFS-AEIAYNTFLKLI 239 (314)
T ss_pred HhchHHHHHHH-HHHHHH--cCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHHHH
Confidence 44577777554 555542 232 1344446789999999999999999999877665443 33333333333
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHc
Q 003517 137 TLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAEL 186 (813)
Q Consensus 137 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el 186 (813)
+.|++. ++...++ +.+ ....-..++++.+..++.+.++.+.
T Consensus 240 ~~P~i~-~~~~~~~------~l~--~~~~~v~vl~aa~P~a~~~~i~A~~ 280 (314)
T PRK09903 240 LMPLAL-LLVGMAC------HLN--SEHLQMMVLAGALPPAFSGIIIASR 280 (314)
T ss_pred HHHHHH-HHHHHHc------CCC--cHHHHHHHHHHcccHHHHHHHHHHH
Confidence 345543 2222222 112 1234455566666666666666654
No 128
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=70.81 E-value=56 Score=36.83 Aligned_cols=75 Identities=21% Similarity=0.252 Sum_probs=50.0
Q ss_pred HHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhH
Q 003517 313 IEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGL 388 (813)
Q Consensus 313 l~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~ 388 (813)
+.+++..+.+.+-..--|++++++.+.. ..|+...+..+..++.-.+....+.+.++++|-|++.+|.+.+..-.
T Consensus 59 ~Ay~vg~lALaiILfdgG~~T~lss~r~-a~~palsLATlGVl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTDA 133 (574)
T COG3263 59 FAYMVGNLALAIILFDGGFGTQLSSFRV-AAGPALSLATLGVLITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTDA 133 (574)
T ss_pred HHHHHHHHHHHHHhhcCccCCcHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhhccccH
Confidence 4444455666666667799999888765 23444444444444555555667788899999999999987655443
No 129
>COG3329 Predicted permease [General function prediction only]
Probab=65.70 E-value=1.5e+02 Score=31.78 Aligned_cols=119 Identities=8% Similarity=0.032 Sum_probs=65.6
Q ss_pred hhHHHHHHHHhhhcCC---CCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHH
Q 003517 286 IHALFGAFVVGIIMPK---EGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGT 362 (813)
Q Consensus 286 ~~~~lgaf~aGL~l~~---~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~ 362 (813)
++|.+.-|+.|++.+- +-.+...+.+-+- -.++---=.--|+.+.-+.+.. .+..++.-+.+.++.-+++.
T Consensus 16 ~sP~llFf~~Gmlia~~ksdl~iP~~i~~~ls----lyLL~aIG~kGGveir~snl~a--~v~~~~~~~aL~~li~~ia~ 89 (372)
T COG3329 16 LSPTLLFFILGMLIAAFKSDLEIPEAIYQALS----LYLLLAIGFKGGVEIRNSNLTA--MVLPVALGVALGFLIVFIAY 89 (372)
T ss_pred ccchHHHHHHHHHHHHHhccccCchHHHHHHH----HHHHHHHhcccceeeecCCcch--hHHHHHHHHHHHHHHHHHHH
Confidence 3677888888887763 1112222222111 1111111112234444333332 33333344444555667777
Q ss_pred HHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCCCChHHHHH
Q 003517 363 VVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAI 410 (813)
Q Consensus 363 ~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~~~~ 410 (813)
++..++.|++..|+...+-..+....+.++.+...++..-+..+-|..
T Consensus 90 f~l~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~ 137 (372)
T COG3329 90 FLLRKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMP 137 (372)
T ss_pred HHHHHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHH
Confidence 888888899999999988877777777777666655554455555444
No 130
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=63.99 E-value=41 Score=33.03 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=31.6
Q ss_pred eEEEecCCCcChHHHHHHHHHHhcCC--CeEEEEEEeecC
Q 003517 625 SVVVPFFGGLDDCEALAYGMRMAEHP--GIKLTVVKFVAP 662 (813)
Q Consensus 625 ~i~v~f~GG~ddreAL~~a~rma~~~--~v~ltvvr~~~~ 662 (813)
+|++.+.||.|+--++.++.+...+. +.+++.+++...
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~ 40 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEG 40 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECC
Confidence 57899999999999999998887643 778888888643
No 131
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=62.89 E-value=2.4e+02 Score=31.09 Aligned_cols=120 Identities=13% Similarity=0.174 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHChh--HHHH-HHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchh-h
Q 003517 268 CITLSMVLAASFVTDTIGIH--ALFG-AFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGAT-S 343 (813)
Q Consensus 268 ~~~l~~~l~~~~~ae~~g~~--~~lg-af~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~-~ 343 (813)
...+.+.+..+++.+..|+. -++| +.++|.+..- ....-.+-..+...+ .-+-=+.+|.++..+.+.... .
T Consensus 12 ~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~-~~~~l~~P~~l~~~~----q~ilG~~ig~~~t~s~l~~l~~~ 86 (352)
T COG3180 12 FILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGL-RGLTLPLPRGLFKAG----QVILGIMIGASLTPSVLDTLKSN 86 (352)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-ccccccCChHHHHHH----HHHHHHHHhhhcCHHHHHHHHHc
Confidence 44555556777777777774 5677 6666666542 111111112222221 122335668888766654432 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHH
Q 003517 344 WGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLN 395 (813)
Q Consensus 344 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~ 395 (813)
|....++++..+..-.+..|+..|+.+.|..+++. ...|-|.-++....
T Consensus 87 w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta~~---gs~PGgas~m~~iA 135 (352)
T COG3180 87 WPIVLVVLLLTLLSSILLGWLLKRFSILPGNTAFL---GSSPGGASAMVSIA 135 (352)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhH---hcCCchHHHHHHHH
Confidence 66666666677777788888888888777776653 24677766655444
No 132
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=62.21 E-value=2.8e+02 Score=31.60 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=28.9
Q ss_pred HHHHHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHH
Q 003517 176 FPVLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLL 212 (813)
Q Consensus 176 ~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll 212 (813)
.|++....+.+|+.+.+.--.+++++.+.|..+.++-
T Consensus 117 TPivla~~~~~~~~~~~~lp~l~a~~~iAntASl~Lp 153 (423)
T PF02040_consen 117 TPIVLALARRLGLNPKPPLPFLFACAFIANTASLLLP 153 (423)
T ss_pred HHHHHHHHHHcCCCcccchHHHHHHHHHhhhhhcccc
Confidence 6788888888887655555678899999999888653
No 133
>COG2985 Predicted permease [General function prediction only]
Probab=61.83 E-value=36 Score=38.77 Aligned_cols=112 Identities=21% Similarity=0.230 Sum_probs=68.1
Q ss_pred hhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHH---HhcchhhHHHHHHHHHH
Q 003517 62 RVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSI---LRTGKKSLGIALAGITL 138 (813)
Q Consensus 62 ~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l---~~~~~~~~~ia~~~~~~ 138 (813)
..-|.+++|++|| .+|.+.+.+- ..|+ .....+.++|+++||=-+|++---+.. -..+-..+..+..-.++
T Consensus 397 ~aGGpLivaLiLG--~ig~iGpl~w-~mP~---~An~~lrelGl~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~v 470 (544)
T COG2985 397 NAGGPLIVALILG--FIGAIGPLTW-FMPP---GALLALRELGLALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVTLV 470 (544)
T ss_pred ccccHHHHHHHHH--HhcccCceEE-EcCh---hHHHHHHHHHHHHHHHhhccccccchHhhhcccchhhhhHHHHHHHH
Confidence 4557889999998 4565554332 2332 457789999999988888876654333 23444455555666667
Q ss_pred HHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcC
Q 003517 139 PFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELK 187 (813)
Q Consensus 139 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ 187 (813)
|.+.++.++.++.+. +| ..++-+++-+.|++|...- ..|..
T Consensus 471 p~i~~~llg~~v~km---n~----~~l~G~laGs~T~ppaLa~-and~~ 511 (544)
T COG2985 471 PVIIVFLLGRYVLKM---NW----LLLCGALAGSMTDPPALAF-ANDAA 511 (544)
T ss_pred HHHHHHHHHHHHHhc---cH----HHHhhHHhcCCCChHHHHH-Hhhcc
Confidence 777777777666432 21 1233444557888885544 44433
No 134
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=61.78 E-value=11 Score=43.20 Aligned_cols=77 Identities=23% Similarity=0.410 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcCCcEEEec---CCcccccCCcccccccchHHHHHHHhccCCCceEEEecCCCCC-C---Ccccccccce
Q 003517 552 HEDICASAHRKRAALILLP---FHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIFVDRGLGG-T---TQVVASEVSY 624 (813)
Q Consensus 552 ~~dI~~~A~e~~adlIIlp---~h~~~~~~g~~~~~~~~~r~~n~~vl~~apCsVgIlvdrg~~~-~---~~~~~~~~~~ 624 (813)
.++||.+|+++++|+|++| ||....+.-. -+..++.+=+.-+..-||..-++-|.+... . ..+.-.+...
T Consensus 41 FeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~---L~~~i~lLRryClgdkP~~le~lSD~s~~f~~~~f~~VNY~DpNl 117 (646)
T KOG2310|consen 41 FEEILEIAQENDVDMILLGGDLFHENKPSRKT---LHRCLELLRRYCLGDKPVQLEILSDQSVNFGNSVFGNVNYEDPNL 117 (646)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCCccHHH---HHHHHHHHHHHccCCCceeeEEecccceeccccccceecccCCCc
Confidence 6899999999999999999 7765443322 233455666677788999999998987431 1 1121222345
Q ss_pred eEEEecC
Q 003517 625 SVVVPFF 631 (813)
Q Consensus 625 ~i~v~f~ 631 (813)
+|.+|.+
T Consensus 118 NIsIPVF 124 (646)
T KOG2310|consen 118 NISIPVF 124 (646)
T ss_pred ceeeeeE
Confidence 7777765
No 135
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=61.26 E-value=42 Score=33.05 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=31.7
Q ss_pred eEEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEeec
Q 003517 625 SVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVA 661 (813)
Q Consensus 625 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~ 661 (813)
+|++.+.||.|+--++.++.+...+.+.+++++++..
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~ 37 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDH 37 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 4789999999999999999998876667888888753
No 136
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=58.92 E-value=46 Score=35.13 Aligned_cols=34 Identities=9% Similarity=0.028 Sum_probs=27.9
Q ss_pred EecCCCcChHHHHHHHHHHhcCC-CeEEEEEEeec
Q 003517 628 VPFFGGLDDCEALAYGMRMAEHP-GIKLTVVKFVA 661 (813)
Q Consensus 628 v~f~GG~ddreAL~~a~rma~~~-~v~ltvvr~~~ 661 (813)
+.+.=.|.|+.|++.|.|+.++. +.++|++.+=+
T Consensus 30 ~~~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp 64 (256)
T PRK03359 30 ADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGG 64 (256)
T ss_pred CccccChhhHHHHHHHHHHhhhcCCCEEEEEEECC
Confidence 35555799999999999999875 48999999753
No 137
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=58.60 E-value=47 Score=36.04 Aligned_cols=106 Identities=24% Similarity=0.314 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHH
Q 003517 63 VIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFAL 142 (813)
Q Consensus 63 ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~ 142 (813)
.+|-++.|.+-||.+...+.+++..+|..- +.+||...|++- -+.++..+|..+.+...+++.|.+-
T Consensus 183 LlGgliIG~~~g~~g~~~i~pf~~~lF~G~------------L~lFLLeMGl~A-~~rL~~l~~~g~~li~Fgi~~Pli~ 249 (327)
T PF05982_consen 183 LLGGLIIGFLAGPEGVESIKPFFVDLFKGV------------LCLFLLEMGLVA-ARRLRDLRKVGWFLIAFGILMPLIN 249 (327)
T ss_pred HHHHHHHhheeCccchhhccchhhccHHHH------------HHHHHHHhhHHH-HHhhHHHHhhhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHH
Q 003517 143 GIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARI 182 (813)
Q Consensus 143 ~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~i 182 (813)
+. ++..+.+..+.+.........+++.-|--+-|...|.
T Consensus 250 a~-ig~~lg~~~gls~Gg~~llavLaASASYIAvPAAmR~ 288 (327)
T PF05982_consen 250 AL-IGIGLGWLLGLSPGGAVLLAVLAASASYIAVPAAMRA 288 (327)
T ss_pred HH-HHHHHHHHhCCCCccHHHHHHHHhhHhhhhhhHHHHh
No 138
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=58.09 E-value=20 Score=39.12 Aligned_cols=130 Identities=16% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHhhhhHHHHHH
Q 003517 316 MVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSC--KVPLRESLALGFIMNTKGLVELIV 393 (813)
Q Consensus 316 ~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~--~~~~re~~~lgl~l~~kG~v~l~~ 393 (813)
+.++++=|+-|..+|..+|+..+.......+.....=..++.-++++.....+- |++.+|+-.+|.+=+.-|-.++.+
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfv 210 (433)
T PRK15475 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYL 210 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHh
Q ss_pred HHhhccc--CCCChHHHHHHHHHHHHHHHhHHHHHHHhhcccccCCC-CccccccCCCC
Q 003517 394 LNIGKDR--KVLNDQAFAILVLMALFTTFITTPILMAIYKPARKGVP-YKHRTIQRKDT 449 (813)
Q Consensus 394 ~~~~~~~--~~i~~~~~~~lvl~~vv~t~i~~plv~~l~~~~~~~~~-~~~~~i~~~~~ 449 (813)
.+..... +.+.-..|+-| -+.-.+-||+.+.+..+++|..+ ++.|+..+...
T Consensus 211 sskLAP~Llg~IaVAAYSYM----aLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eK 265 (433)
T PRK15475 211 SGKLAPELLGAIAVAAYSYM----ALVPLIQPPIMKALTTETERKIRMVQLRTVSKREK 265 (433)
T ss_pred HhhhhhHhHHHHHHHHHHHH----HHHhcccchHHHhccCHHHhCccCCCCCCCCccch
No 139
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=57.85 E-value=21 Score=39.09 Aligned_cols=130 Identities=16% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHhhhhHHHHHH
Q 003517 316 MVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSC--KVPLRESLALGFIMNTKGLVELIV 393 (813)
Q Consensus 316 ~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~--~~~~re~~~lgl~l~~kG~v~l~~ 393 (813)
+.++++=|+-|..+|..+|+..+.......+.....=.+++.-++++.....+- |++.+|+-.+|.+=+.-|-.++.+
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfv 210 (433)
T PRK15476 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYL 210 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHh
Q ss_pred HHhhccc--CCCChHHHHHHHHHHHHHHHhHHHHHHHhhcccccCCC-CccccccCCCC
Q 003517 394 LNIGKDR--KVLNDQAFAILVLMALFTTFITTPILMAIYKPARKGVP-YKHRTIQRKDT 449 (813)
Q Consensus 394 ~~~~~~~--~~i~~~~~~~lvl~~vv~t~i~~plv~~l~~~~~~~~~-~~~~~i~~~~~ 449 (813)
.+..... +.+.-..|+-| -+.-.+-||+.+.+-.+++|..+ ++.|+..+...
T Consensus 211 sskLAP~Llg~IaVAAYSYM----aLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eK 265 (433)
T PRK15476 211 SGKLAPELLGAIAVAAYSYM----ALVPLIQPPIMKALTTEKERKIRMVQLRTVSKREK 265 (433)
T ss_pred HhhhhhHhHHHHHHHHHHHH----HHHhcccchHHHhccCHHHhCccCCCCCCCCccch
No 140
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=57.80 E-value=21 Score=39.08 Aligned_cols=130 Identities=16% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHhhhhHHHHHH
Q 003517 316 MVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSC--KVPLRESLALGFIMNTKGLVELIV 393 (813)
Q Consensus 316 ~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~--~~~~re~~~lgl~l~~kG~v~l~~ 393 (813)
+.++++=|+-|..+|..+|+..+.......+.....=.+++.-++++.....+- |++.+|+-.+|.+=+.-|-.++.+
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfv 210 (433)
T PRK15477 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYL 210 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHh
Q ss_pred HHhhccc--CCCChHHHHHHHHHHHHHHHhHHHHHHHhhcccccCCC-CccccccCCCC
Q 003517 394 LNIGKDR--KVLNDQAFAILVLMALFTTFITTPILMAIYKPARKGVP-YKHRTIQRKDT 449 (813)
Q Consensus 394 ~~~~~~~--~~i~~~~~~~lvl~~vv~t~i~~plv~~l~~~~~~~~~-~~~~~i~~~~~ 449 (813)
.+..... +.+.-..|+-| -+.-.+-||+.+.+-.+++|..+ ++.|+..+...
T Consensus 211 sskLAP~Llg~IaVAAYSYM----aLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eK 265 (433)
T PRK15477 211 SGKLAPELLGAIAVAAYSYM----ALVPLIQPPIMKALTTEKERKIRMVQLRTVSKREK 265 (433)
T ss_pred HhhhhhHhHHHHHHHHHHHH----HHHhcccchHHHhccCHHHhCccCCCCCCCCccch
No 141
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=57.07 E-value=41 Score=36.33 Aligned_cols=112 Identities=21% Similarity=0.283 Sum_probs=63.2
Q ss_pred HHHHhhHHHHHHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------ChHHHHHHHHHHhhhhHH
Q 003517 316 MVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKV------PLRESLALGFIMNTKGLV 389 (813)
Q Consensus 316 ~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~------~~re~~~lgl~l~~kG~v 389 (813)
+.++++=|+-|..+|..+|+..+.... + ..++-..+-++- ..+++.+..+|+ +.+|+-.+|.+=+.-|-.
T Consensus 60 i~~~l~P~LIFlGIGAmtDFgpllanP-~--~~llGaaAQ~Gi-F~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGPt 135 (354)
T TIGR01109 60 IGSGIAPLLIFMGIGALTDFGPLLANP-R--TLLLGAAAQFGI-FATVFGALTLNFFGIISFSLPQAAAIGIIGGADGPT 135 (354)
T ss_pred HhcchHHHHHHHhccHHhhhHHHHhCh-H--HHHHHHHHHhhH-HHHHHHHHHhCCCcccccChhhceeeeeeccCCCch
Confidence 335788888999999999998765422 2 222222333332 345566677788 669988888764555555
Q ss_pred HHHHHHhhc-c-cCCCChHHHHHHHHHHHHHHHhHHHHHHHhhccccc
Q 003517 390 ELIVLNIGK-D-RKVLNDQAFAILVLMALFTTFITTPILMAIYKPARK 435 (813)
Q Consensus 390 ~l~~~~~~~-~-~~~i~~~~~~~lvl~~vv~t~i~~plv~~l~~~~~~ 435 (813)
++.+.+... + .+.+.-..|+-| -+.-.+-||+++.+..+++|
T Consensus 136 ~If~s~~lap~Llg~IaVAAYsYM----aLvPiiqPpimklLttkkeR 179 (354)
T TIGR01109 136 AIYLSGKLAPELLAAIAVAAYSYM----ALVPIIQPPIMKALTSEKER 179 (354)
T ss_pred hhhhHhhhhhHHHHHHHHHHHHHH----HHHhcccchHHHhhcChHHh
Confidence 544433211 1 011222222222 23345678888887755444
No 142
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=57.07 E-value=2.9e+02 Score=30.02 Aligned_cols=135 Identities=13% Similarity=0.147 Sum_probs=79.5
Q ss_pred hHHHHHHHHhhhcCC-CCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 003517 287 HALFGAFVVGIIMPK-EGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVV 365 (813)
Q Consensus 287 ~~~lgaf~aGL~l~~-~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~ 365 (813)
+|.+=|.++|+++.- +-+....+.+-++.+ .....|+-...+|+.++...... .+.......++.++.-.+.++..
T Consensus 182 nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~l-g~~~~plaLl~lG~~l~~~~~~~--~~~~~~~~~~~klil~P~i~~~~ 258 (321)
T TIGR00946 182 FPPLWAPLLSVILSLVGFKMPGLILKSISIL-SGATTPMALFSLGLALSPRKIKL--GVRDAILALIVRFLVQPAVMAGI 258 (321)
T ss_pred CCChHHHHHHHHHHHHhhcCcHHHHHHHHHH-HHHHHHHHHHHHHHhhChhhhcc--ChHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667776652 123345566666666 68889999999999998776643 33344444455555556666777
Q ss_pred HHhcCCChHHH--HHHHHHHhhhhHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHhHHHHHHHh
Q 003517 366 AWSCKVPLRES--LALGFIMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAI 429 (813)
Q Consensus 366 ~~~~~~~~re~--~~lgl~l~~kG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~plv~~l 429 (813)
+..++.+.... ..+-.. .|-+....+++ .+.+ .+++..+..+....+.++++-|+..++
T Consensus 259 ~~~~~l~~~~~~~~vl~aa-~P~a~~~~i~A---~~y~-~~~~~aa~~v~~sT~ls~~tlp~~~~l 319 (321)
T TIGR00946 259 SKLIGLRGLELSVAILQAA-LPGGAVAAVLA---TEYE-VDVELASTAVTLSTVLSLISLPLFIIL 319 (321)
T ss_pred HHHhCCChHHHHHHHHHHc-CChhhHHHHHH---HHhC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777765443 222222 33443333333 2333 356666666666666677777766554
No 143
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=56.75 E-value=63 Score=39.31 Aligned_cols=122 Identities=12% Similarity=0.053 Sum_probs=74.0
Q ss_pred ceeEEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEeecCCCCCcccCCCCCCcccccccCCCCccccHHHHHHHHH---
Q 003517 623 SYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFK--- 699 (813)
Q Consensus 623 ~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~--- 699 (813)
..+|+|-..|+|...--+..|.|||+.-+...|++++..++... ..+.+.+.+.+..
T Consensus 248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~--------------------~~~~~~~~l~~~~~La 307 (890)
T COG2205 248 RERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHR--------------------LSEKEARRLHENLRLA 307 (890)
T ss_pred cceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEecccccc--------------------ccHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999998654422 1112223333222
Q ss_pred hhhccCCCCeEEEEEEecChHHHHHHHhccCCCcEEEEccCCCCCCCCCCccccccCccccchhhhhcCCCCCcccEEEE
Q 003517 700 SIASKNQESITLEERLVESSQEIAGVLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVVVL 779 (813)
Q Consensus 700 ~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~~DLviVGr~~~~~gl~~w~~~e~~~eLG~igd~las~d~~~~~SvLvv 779 (813)
++. +.+ ..-..-.|..+++.......+.--+|+||++ . +.| -+ .- -|.+.|-|+... ....|-+|
T Consensus 308 e~l--Gae---~~~l~~~dv~~~i~~ya~~~~~TkiViG~~~-~---~rw--~~-~~-~~~l~~~L~~~~--~~idv~ii 372 (890)
T COG2205 308 EEL--GAE---IVTLYGGDVAKAIARYAREHNATKIVIGRSR-R---SRW--RR-LF-KGSLADRLAREA--PGIDVHIV 372 (890)
T ss_pred HHh--CCe---EEEEeCCcHHHHHHHHHHHcCCeeEEeCCCc-c---hHH--HH-Hh-cccHHHHHHhcC--CCceEEEe
Confidence 222 211 1222223444444333333347889999997 1 135 33 11 188888888653 33444444
No 144
>COG0679 Predicted permeases [General function prediction only]
Probab=55.83 E-value=2.3e+02 Score=30.72 Aligned_cols=101 Identities=16% Similarity=0.273 Sum_probs=62.2
Q ss_pred HHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003517 288 ALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAW 367 (813)
Q Consensus 288 ~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~ 367 (813)
+++.-...|..+.+......+-.+-+..++..+.+|.-++..=.+.+.+... .+...+..++..++.=+...++..+
T Consensus 11 pi~lii~lGy~~~r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (311)
T COG0679 11 PIFLIILLGYLLKRFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGLA---DLGLIVASLVATLLAFFLLALIGRF 87 (311)
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchhh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666655566666677889999999999877666666665442 2444444444444555556666677
Q ss_pred hcCCChHHH--HHHHHHHhhhhHHHH
Q 003517 368 SCKVPLRES--LALGFIMNTKGLVEL 391 (813)
Q Consensus 368 ~~~~~~re~--~~lgl~l~~kG~v~l 391 (813)
..+.+.+++ ..++...+.-|-+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~N~g~lg~ 113 (311)
T COG0679 88 LFKLDKRETVIFALASAFPNIGFLGL 113 (311)
T ss_pred HhccchhhHHHHHHHHHhcccchhhH
Confidence 777777766 334444455555543
No 145
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=54.87 E-value=1.8e+02 Score=32.66 Aligned_cols=96 Identities=23% Similarity=0.287 Sum_probs=54.0
Q ss_pred HHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHH-HHHHH--hhhhH
Q 003517 313 IEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVP-LRESLA-LGFIM--NTKGL 388 (813)
Q Consensus 313 l~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~-~re~~~-lgl~l--~~kG~ 388 (813)
+-+.++..++|+-....=++.|+..+.. .. +...+..+++.++-.+++.++.+.++.. -.|.+. .|... -.-|.
T Consensus 52 ~y~~v~~~~vPlai~LlLl~~Dlr~i~~-~g-~~~l~~F~~~~~g~viG~~va~~l~~~~l~~~~wk~ag~l~gsyiGGs 129 (378)
T PF05684_consen 52 VYDFVWTYLVPLAIPLLLLSADLRRILR-LG-GRLLLAFLIGAVGTVIGAVVAFLLFGGFLGPEGWKIAGMLAGSYIGGS 129 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHH-hh-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCch
Confidence 4445566777777666678889988765 22 3344555566667777777776666544 233332 22222 22455
Q ss_pred HHHHHHHhhcccCCCChHHHHHHHH
Q 003517 389 VELIVLNIGKDRKVLNDQAFAILVL 413 (813)
Q Consensus 389 v~l~~~~~~~~~~~i~~~~~~~lvl 413 (813)
+.++....+++ .+++.++.++.
T Consensus 130 ~N~~Av~~al~---~~~~~~~a~~a 151 (378)
T PF05684_consen 130 VNFVAVAEALG---VSDSLFAAALA 151 (378)
T ss_pred hHHHHHHHHHC---CCHHHHHHHHH
Confidence 55555544443 34566665533
No 146
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=53.81 E-value=14 Score=31.44 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=27.1
Q ss_pred EEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEe
Q 003517 626 VVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKF 659 (813)
Q Consensus 626 i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~ 659 (813)
|++++.||+|+..++.+|.+.+ ..+.+++++++
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~ 33 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVV 33 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEe
Confidence 4789999999999999999987 44557777775
No 147
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=53.60 E-value=67 Score=36.23 Aligned_cols=100 Identities=24% Similarity=0.314 Sum_probs=64.8
Q ss_pred hHHHHHHHhccCC--CceEEEecCCCCCCCcccccccceeEEEecCCCcChHHHHHHHHHHh-cCCCeEEEEEEeecCCC
Q 003517 588 FHLVNRRALQHAP--CSVGIFVDRGLGGTTQVVASEVSYSVVVPFFGGLDDCEALAYGMRMA-EHPGIKLTVVKFVAPKG 664 (813)
Q Consensus 588 ~r~~n~~vl~~ap--CsVgIlvdrg~~~~~~~~~~~~~~~i~v~f~GG~ddreAL~~a~rma-~~~~v~ltvvr~~~~~~ 664 (813)
...+|++|+-.+| |.- |+-++ ....+|||+|.||-|.---..++.+.+ .|+.+.|-=+-|-.++.
T Consensus 225 ~ds~k~rvl~i~~rl~~~-i~~~c-----------~~~s~VcVlfSGGvDs~vvA~l~h~~vp~ne~IdLINVaF~n~e~ 292 (520)
T KOG0573|consen 225 RDSLKDRVLVIPPRLCAN-ILLRC-----------IHESNVCVLFSGGVDSTVVAVLAHYVVPENEPIDLINVAFGNPEG 292 (520)
T ss_pred HHHHhhhhhccChhHhhh-ccccc-----------cccCcEEEEecCCchHHHHHHHHHhhcCCCCceeEEEeeccCCCc
Confidence 4467777777766 222 22111 223589999999999999888998887 56666666666643311
Q ss_pred CCcccCCCCCCcccccccCCC-CccccHHHHHHHHHhhhccCCCCeEEEEEEec
Q 003517 665 TSLTFGSDAPGVISIDLLRGD-NDQVGDDAIISDFKSIASKNQESITLEERLVE 717 (813)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~l~~~~~~~~~~~~~v~y~e~~v~ 717 (813)
.. +++ ++++.-..-++|++..+ .+....+.|+-|.
T Consensus 293 ~~----------------~~~~PDRktgr~g~~eL~s~~--P~R~~nlV~vnV~ 328 (520)
T KOG0573|consen 293 SK----------------EQNVPDRKTGRRGLEELQSLY--PKRSWNLVEVNVT 328 (520)
T ss_pred cc----------------ccCCccHHHHHHHHHHHHHhC--CcceEEEEeccCC
Confidence 11 123 67778888899999876 4455666665443
No 148
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=53.03 E-value=1.8e+02 Score=27.69 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=18.8
Q ss_pred hHHHHHH--HhccccchhhhhchhhHHHHHHHHHHHHHHHHH
Q 003517 321 FLPLYFA--ASGLKTNVATIRGATSWGLLLLVILNACFGKIV 360 (813)
Q Consensus 321 ~~plFF~--~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~ 360 (813)
-+|+||+ .+|....++.+.+ ..|. .++.+++.++.=++
T Consensus 68 ~m~LfFVPagVGim~~~~ll~~-~~~~-Il~~ivvSTllvl~ 107 (141)
T PRK04125 68 NIGFLFVPSGISVINSLGVMSQ-YPVQ-IIGVIIVATILLLA 107 (141)
T ss_pred HHHHHHhhhHhHHHHhHHHHHH-HHHH-HHHHHHHHHHHHHH
Confidence 3677777 5555555666654 3343 33333333333333
No 149
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=52.47 E-value=24 Score=38.17 Aligned_cols=37 Identities=30% Similarity=0.310 Sum_probs=31.5
Q ss_pred ceeEEEecCCCcChHHHHHHHHHHhcCCCe-EEEEEEe
Q 003517 623 SYSVVVPFFGGLDDCEALAYGMRMAEHPGI-KLTVVKF 659 (813)
Q Consensus 623 ~~~i~v~f~GG~ddreAL~~a~rma~~~~v-~ltvvr~ 659 (813)
..+|||-|.||+|+-..|.++.+.++..+- ++.|+++
T Consensus 27 f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~Vlfi 64 (407)
T COG3969 27 FPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFI 64 (407)
T ss_pred CCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEE
Confidence 458999999999999999999999976555 7888876
No 150
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=50.77 E-value=1.8e+02 Score=32.21 Aligned_cols=92 Identities=15% Similarity=0.125 Sum_probs=51.3
Q ss_pred HHhccc-CCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHH-HHHHHHHHHHHHHHhhc-cChhHHHhcc-hhh
Q 003517 53 FLLKPL-RQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLE-TLANIGLLFFLFLVGLE-LDIKSILRTG-KKS 128 (813)
Q Consensus 53 ~l~~~l-~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~-~l~~lgl~~llF~~Gle-~d~~~l~~~~-~~~ 128 (813)
.+++.+ ++|..+-.++.|+++-- +|..++-.+ +....+. ++..--...+|+-.|+. +|++++.+.. ...
T Consensus 196 ~l~~~~~~Ih~~v~mII~~vi~k~--~gllp~~i~-----~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~ 268 (347)
T TIGR00783 196 GLLKSFPGIPAYAFMILIAAALKA--FGLVPKEIE-----EGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQF 268 (347)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHH--hCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhH
Confidence 334443 68999999999999873 444432100 0112222 33333333455557886 8999999877 444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003517 129 LGIALAGITLPFALGIGTSFVLR 151 (813)
Q Consensus 129 ~~ia~~~~~~~~~~~~~~~~~l~ 151 (813)
+.+.+.+++.-.+.++.++.+++
T Consensus 269 vviiv~~Vlg~ii~s~lvGKllG 291 (347)
T TIGR00783 269 VVICLSVVVAMILGGAFLGKLMG 291 (347)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhC
Confidence 44444444444444555555554
No 151
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=50.26 E-value=2.1e+02 Score=31.11 Aligned_cols=91 Identities=24% Similarity=0.276 Sum_probs=47.1
Q ss_pred HHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhch-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003517 289 LFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGA-TSWGLLLLVILNACFGKIVGTVVVAW 367 (813)
Q Consensus 289 ~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~-~~~~~~~~ii~~~~~~K~~~~~l~~~ 367 (813)
++.+.++|...|.-+.....+. .|.. ..+...+-|...|++++.+.+... ..|..........++.=.+.++...+
T Consensus 7 l~~ai~la~~~P~~g~~~~~~~--~~~~-~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~ 83 (313)
T PF13593_consen 7 LLLAILLAYLFPAPGAAGGVIK--PEYV-IKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSR 83 (313)
T ss_pred HHHHHHHHHHcCcccccCCccc--hhhh-HHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777888886333222221 1223 233356667778999998877653 24544444444444444444444444
Q ss_pred hcCCChHHHHHHHHH
Q 003517 368 SCKVPLRESLALGFI 382 (813)
Q Consensus 368 ~~~~~~re~~~lgl~ 382 (813)
..+-...+.+..|+.
T Consensus 84 l~~~~~~~~l~~Gl~ 98 (313)
T PF13593_consen 84 LFPAFLPPELALGLL 98 (313)
T ss_pred HhhccCCHHHHHHHH
Confidence 443212233555553
No 152
>TIGR03869 F420-0_ABCperm proposed F420-0 ABC transporter, permease protein. his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=50.06 E-value=3.8e+02 Score=29.38 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=34.6
Q ss_pred HHhcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHH
Q 003517 53 FLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFL 111 (813)
Q Consensus 53 ~l~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~ 111 (813)
.+...+|+|+++.-+++|..+|-++.=. ...++.-.-+.+.--++.-+.+|.++.+|.
T Consensus 47 ~ii~~~RlPRil~a~lvG~~La~sG~i~-Q~l~rNpLa~P~iLGissGA~l~~~l~~~~ 104 (325)
T TIGR03869 47 AIVWDLRLPRVLTAAAVGAGLAIAGAVM-QSLTRNPLADPYLLGLSSGASLGAVAVLVL 104 (325)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 3556789999999999999998554211 111111111223344555667777776665
No 153
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=50.05 E-value=2.8e+02 Score=27.79 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 003517 347 LLLVILNACFGKIVGTVVVAWSCK 370 (813)
Q Consensus 347 ~~~ii~~~~~~K~~~~~l~~~~~~ 370 (813)
..+.++...++=++|+++..+.+|
T Consensus 161 ~~~~~~~t~v~~~iG~~iG~kllk 184 (189)
T TIGR02185 161 AVIMIVLTAVAGIAGVLIGKKLLK 184 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666788887777664
No 154
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=49.61 E-value=2.8e+02 Score=27.68 Aligned_cols=127 Identities=19% Similarity=0.328 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHH--HHChhHHHHHHHHhhhcCCCCCchHHHHHHHHHH
Q 003517 239 VFAVFVIRPVLSLMARRSPEGEPVKELYVCITLSMVLAASFVTD--TIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDM 316 (813)
Q Consensus 239 ~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae--~~g~~~~lgaf~aGL~l~~~~~~~~~l~~kl~~~ 316 (813)
.+..++.+|+.-.+..|.++. ....+..+...++.....+ ..-...+++++++=++... ..+++.....+-..
T Consensus 38 ~i~ali~g~vyml~~~KV~K~----G~~~i~~~i~gl~~~~~G~~~~~~~~~iv~gliAElI~~~-g~y~~~~~~~iay~ 112 (186)
T PF09605_consen 38 AIAALICGIVYMLMVAKVPKR----GAFLIMGIIMGLIFFLMGHGWPMLIVCIVGGLIAELILKK-GGYKSKKRNTIAYA 112 (186)
T ss_pred HHHHHHHHHHHHHHHHHcCch----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHH
Confidence 344556677777777777542 2222222222222211122 2333556777777777754 34443333332211
Q ss_pred H-----HHhhHHHHHHHhccc---------cc-hhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003517 317 V-----SGLFLPLYFAASGLK---------TN-VATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCK 370 (813)
Q Consensus 317 ~-----~~~~~plFF~~~G~~---------~d-l~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~ 370 (813)
+ .+-+.|++|..=... -+ ...+.+....+...+.++..+++=++|+++..+.+|
T Consensus 113 vf~~~~~g~~~p~~~~~~~y~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~v~a~lG~~lG~kllk 181 (186)
T PF09605_consen 113 VFSLGYMGPYLPIWFMRDAYLAAMIAKGMGAEYADTMISFFTPWMLIIIIIITFVGALLGALLGKKLLK 181 (186)
T ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHcCCCHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 256677776543332 11 111111112233444555556677778877776654
No 155
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=49.08 E-value=3.8e+02 Score=28.99 Aligned_cols=84 Identities=17% Similarity=0.160 Sum_probs=56.4
Q ss_pred HHhhHHHHHHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhh
Q 003517 318 SGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIG 397 (813)
Q Consensus 318 ~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~ 397 (813)
..+++=.|++.++...|+..+...+.|.+ ..+...+...+..+..+++++.+..+-...++ -|.-|-.+.-....+
T Consensus 275 gtv~lY~~v~vias~Ad~~~i~taP~~i~---~gf~il~~h~~v~f~~~KlF~~dL~~i~~Asl-AniGG~~sAp~~A~A 350 (384)
T COG5505 275 GTVLLYLFVVVIASPADLRLIVTAPLIIL---FGFIILISHLAVSFAAGKLFRVDLEEILLASL-ANIGGPTSAPAMAIA 350 (384)
T ss_pred hHHHHHHHHHHhccchhHHHHHhhhHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hccCCccchhHHHhh
Confidence 35666678999999999988876443432 22333345566677788999988887766665 377777776666677
Q ss_pred cccCCCCh
Q 003517 398 KDRKVLND 405 (813)
Q Consensus 398 ~~~~~i~~ 405 (813)
.++..+.+
T Consensus 351 ~nr~lv~~ 358 (384)
T COG5505 351 KNRELVAP 358 (384)
T ss_pred cCchhcch
Confidence 66554443
No 156
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=48.85 E-value=1.1e+02 Score=29.76 Aligned_cols=87 Identities=13% Similarity=0.129 Sum_probs=51.0
Q ss_pred HHHHHHHhhhcCCC---CCchHHHHHHHHHHHHHhhHHHHHHHhccccchh---hhhchhhHHHHHHHHHHHHHHHHHHH
Q 003517 289 LFGAFVVGIIMPKE---GPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVA---TIRGATSWGLLLLVILNACFGKIVGT 362 (813)
Q Consensus 289 ~lgaf~aGL~l~~~---~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~---~l~~~~~~~~~~~ii~~~~~~K~~~~ 362 (813)
.-|+++.|+++.+- .|....+-.....+..++-+-+|...+|++.-.. .+.....+....+..++.++.-.+..
T Consensus 24 ~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~ 103 (154)
T TIGR01625 24 AGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVA 103 (154)
T ss_pred cHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 45777777777643 2333344445566667888899999999998643 33331112222222333333345566
Q ss_pred HHHHHhcCCChHH
Q 003517 363 VVVAWSCKVPLRE 375 (813)
Q Consensus 363 ~l~~~~~~~~~re 375 (813)
++..+++|+++-.
T Consensus 104 ~~~~~~~~~~~~~ 116 (154)
T TIGR01625 104 VALIKLLRINYAL 116 (154)
T ss_pred HHHHHHhCCCHHH
Confidence 6667789998754
No 157
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=47.66 E-value=58 Score=37.34 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=43.6
Q ss_pred eeEEEecCCCcChHHHHHHHHHHh-cCCCeEEEEEEeecCCCCCcccCCCCCCcccccccCCCCccccHHHHHHHHHhhh
Q 003517 624 YSVVVPFFGGLDDCEALAYGMRMA-EHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFKSIA 702 (813)
Q Consensus 624 ~~i~v~f~GG~ddreAL~~a~rma-~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 702 (813)
.+|++.+.||+|+--.|.+..++. ..++.+++++|+...-. .+.+.+.++.+++..+.
T Consensus 16 ~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr---------------------~~s~~~~~~~~~~~~~l 74 (436)
T PRK10660 16 RQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLS---------------------PNADSWVKHCEQVCQQW 74 (436)
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCC---------------------cchHHHHHHHHHHHHHc
Confidence 589999999999998888888776 45688999999974322 12234567888887765
No 158
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=47.06 E-value=43 Score=36.13 Aligned_cols=37 Identities=11% Similarity=0.058 Sum_probs=29.5
Q ss_pred eEEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEeec
Q 003517 625 SVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVA 661 (813)
Q Consensus 625 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~ 661 (813)
+.++.|.||+|+--.|.++.+.-..-+..+.++++-+
T Consensus 21 ~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDT 57 (294)
T TIGR02039 21 RPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDT 57 (294)
T ss_pred CcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEec
Confidence 4568899999999999999988654356778888754
No 159
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=46.15 E-value=3.6e+02 Score=30.71 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhHHHHHHHhccccch
Q 003517 311 EKIEDMVSGLFLPLYFAASGLKTNV 335 (813)
Q Consensus 311 ~kl~~~~~~~~~plFF~~~G~~~dl 335 (813)
..++..+++.+|.+||..+|+.+.-
T Consensus 60 ~~l~~wiNDgLMaiFFf~vGLEiKr 84 (423)
T PRK14853 60 LSLGTWAADGLLAIFFFVVGLELKR 84 (423)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHhH
Confidence 3455667889999999999999964
No 160
>PRK12342 hypothetical protein; Provisional
Probab=45.24 E-value=72 Score=33.64 Aligned_cols=33 Identities=12% Similarity=0.029 Sum_probs=27.4
Q ss_pred EecCCCcChHHHHHHHHHHhcCCCeEEEEEEeec
Q 003517 628 VPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVA 661 (813)
Q Consensus 628 v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~ 661 (813)
+.+.=+|.|+.|++.|.|+.+ .+.++|++.+=+
T Consensus 29 ~~~~iNp~D~~AlE~AlrLk~-~g~~Vtvls~Gp 61 (254)
T PRK12342 29 AEAKISQFDLNAIEAASQLAT-DGDEIAALTVGG 61 (254)
T ss_pred CCccCChhhHHHHHHHHHHhh-cCCEEEEEEeCC
Confidence 455667999999999999995 578999999753
No 161
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=44.45 E-value=4.8e+02 Score=28.95 Aligned_cols=75 Identities=9% Similarity=0.058 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhH
Q 003517 266 YVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSW 344 (813)
Q Consensus 266 ~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~ 344 (813)
.+++-+...++++.+. =...+.+|.+.+|-.+.+ ... +++.+..+.-...+..-+.=..+|..++-+.+.+..+.
T Consensus 232 KilFpivv~i~~~ll~--P~a~pLig~Lm~GNllrE-sGv-~rLs~taqn~l~nivTifLGl~vG~t~~A~~FL~~~tl 306 (399)
T TIGR03136 232 KFVFTIVAAMLLCLLL--PVASPLILSFFLGVAIKE-AQI-EPYQNLLEKTLTYGSTLFLGLVLGVLCEASTLLDPRVS 306 (399)
T ss_pred hhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHH-hCc-HHHHHHHHHHHHHHHHHHHHHHhhhhccHHhhCChHHH
Confidence 3555555555555542 234689999999999985 444 55555444332333332334678888887776654433
No 162
>COG3748 Predicted membrane protein [Function unknown]
Probab=43.14 E-value=4.7e+02 Score=28.41 Aligned_cols=55 Identities=16% Similarity=0.162 Sum_probs=30.8
Q ss_pred CCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHHHHHHHHHHHHH
Q 003517 303 GPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKI 359 (813)
Q Consensus 303 ~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~ 359 (813)
+.+++.-..|...- +.+-+|..|+.+.=...+.. ....+|.+..++.+.++..|-
T Consensus 212 P~~gk~akqRS~HN-nylTLPVlF~MlSNHyp~~~-gt~fnWii~alv~l~gV~IRh 266 (407)
T COG3748 212 PKLGKTAKQRSRHN-NYLTLPVLFTMLSNHYPLAF-GTQFNWIIAALVFLMGVLIRH 266 (407)
T ss_pred cchhhhhhhhhhhc-ceehHHHHHHHHhccCcccc-cCchhHHHHHHHHHHHHHHHH
Confidence 33444444443333 45778999887766555432 333578766666655555443
No 163
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=42.37 E-value=3.9e+02 Score=27.29 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHChhHHH-HHHHHhhh
Q 003517 271 LSMVLAASFVTDTIGIHALF-GAFVVGII 298 (813)
Q Consensus 271 l~~~l~~~~~ae~~g~~~~l-gaf~aGL~ 298 (813)
..+.+...+..+++|-.++. .+++.|++
T Consensus 136 ~~i~~~~~~~~~~~G~~Gl~~~a~isGl~ 164 (211)
T PF13194_consen 136 AVILLLSRAAQRWFGDSGLYALAAISGLA 164 (211)
T ss_pred HHHHHHHHHHHHHHChhhHHHHHHHHHhh
Confidence 33444555667789888764 67777764
No 164
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=41.83 E-value=31 Score=39.00 Aligned_cols=54 Identities=17% Similarity=0.284 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhhccCCCCeEEEEEEe---cChHHHHHHHhccCC---CcEEEEccCCCCCCCCC
Q 003517 691 DDAIISDFKSIASKNQESITLEERLV---ESSQEIAGVLKSMNK---CNLFLVGRMAPTAPLMD 748 (813)
Q Consensus 691 d~~~l~~~~~~~~~~~~~v~y~e~~v---~~~~e~~~~i~~~~~---~DLviVGr~~~~~gl~~ 748 (813)
-.+.+...+.+.| .-+|.+....| +.+.|.+.+|+.++. +|++||||++ ..++|
T Consensus 149 irDIl~~~~rR~P--~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGG--GSiED 208 (440)
T COG1570 149 LRDILHTLSRRFP--SVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGG--GSIED 208 (440)
T ss_pred HHHHHHHHHhhCC--CCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCc--chHHH
Confidence 3467777777763 23444444444 336788888888766 8999999999 55555
No 165
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=41.33 E-value=44 Score=36.26 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=29.9
Q ss_pred eEEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEeec
Q 003517 625 SVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVA 661 (813)
Q Consensus 625 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~ 661 (813)
++++.|.||+|+--.|.+|.+.....+..+.++++-+
T Consensus 39 ~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDT 75 (312)
T PRK12563 39 KPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDT 75 (312)
T ss_pred CcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCC
Confidence 5689999999999999999998754455677888754
No 166
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=41.07 E-value=3.3e+02 Score=26.00 Aligned_cols=28 Identities=14% Similarity=0.074 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCh
Q 003517 35 PLIILQICLVVAFTRFLAFLLKPLRQPR 62 (813)
Q Consensus 35 ~~~l~~i~lil~~~~~~~~l~~~l~~P~ 62 (813)
..++.|+++++.+..+...+.+-+++|-
T Consensus 7 ~~~l~ql~ill~~~~lGe~i~~ll~lPi 34 (141)
T PRK04125 7 YSFLHQAFIFAAIMLISNIIASFLPIPM 34 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3567889999888888888887777653
No 167
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=40.43 E-value=4.4e+02 Score=27.27 Aligned_cols=97 Identities=16% Similarity=0.140 Sum_probs=54.4
Q ss_pred HHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHH-HhhccHHHHHHHHH
Q 003517 106 LFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVS-LSITAFPVLARILA 184 (813)
Q Consensus 106 ~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~-ls~Ts~~vv~~iL~ 184 (813)
.-.-|..-+-=.++.+||+|+..+.-.+.+.++.+..+..++.+++.. . .+..+.. =|+| .|+...+-+
T Consensus 71 AtVAlAvPLYkq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~--------~-~~~~Sl~PkSvT-TpiAm~vs~ 140 (230)
T COG1346 71 ATVALAVPLYKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLS--------P-ELILSLLPKSVT-TPIAMEVSE 140 (230)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------H-HHHHHhcccccc-cHHHHHHHH
Confidence 334455556668899999999888777777777777777666666421 1 1222222 2344 456777777
Q ss_pred HcCccCChhHHHHHHHHHHHHHHHHHHH
Q 003517 185 ELKLLTTDLGRIAMSAAAVNDVAAWVLL 212 (813)
Q Consensus 185 el~l~~s~~g~l~ls~a~i~D~~~~~ll 212 (813)
++|=.+.-..-.++-.+++.-+++-.++
T Consensus 141 ~iGGip~ltav~Vi~tGi~Gavlg~~ll 168 (230)
T COG1346 141 SIGGIPALTAVFVILTGILGAVLGPLLL 168 (230)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 7763343333333444444444444333
No 168
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=39.45 E-value=5.4e+02 Score=28.11 Aligned_cols=74 Identities=12% Similarity=0.161 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchh
Q 003517 266 YVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGAT 342 (813)
Q Consensus 266 ~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~ 342 (813)
.+.+-+....+++.+. =...+.+|.+.+|-.+.+ ....+++.+..+.-...+..-+.=..+|..++-+.+.+..
T Consensus 194 Ki~Fpivv~~i~~ll~--P~a~pLig~Lm~GnllrE-sGv~~rl~~taqn~l~nivTifLGl~vG~~~~A~~fL~~~ 267 (354)
T TIGR01109 194 KILFPIVLLLLVALLI--PKALPLVGMLMFGNLMRE-SGVVERLSKTASNELLNIVTILLGLSVGAKMRADKFLTPQ 267 (354)
T ss_pred hhHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHhhCChH
Confidence 3555555555555542 234689999999999985 4444444444333222222222345778888877766533
No 169
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=39.40 E-value=94 Score=32.89 Aligned_cols=34 Identities=26% Similarity=0.256 Sum_probs=28.8
Q ss_pred EecCCCcChHHHHHHHHHHhc-CCCeEEEEEEeec
Q 003517 628 VPFFGGLDDCEALAYGMRMAE-HPGIKLTVVKFVA 661 (813)
Q Consensus 628 v~f~GG~ddreAL~~a~rma~-~~~v~ltvvr~~~ 661 (813)
+++.=.|.|+-|++.|.|+.+ ..+.++|++.+=+
T Consensus 31 v~~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp 65 (260)
T COG2086 31 VPLSINPFDLNAVEEALRLKEKGYGGEVTVLTMGP 65 (260)
T ss_pred CCcccChhhHHHHHHHHHhhccCCCceEEEEEecc
Confidence 455556889999999999999 7999999999753
No 170
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=39.31 E-value=3e+02 Score=34.03 Aligned_cols=65 Identities=18% Similarity=0.201 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhc
Q 003517 102 NIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSIT 174 (813)
Q Consensus 102 ~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~T 174 (813)
.+-+-++....|++.|+..+.+ +.............-++.+.+.+.+.. . ++ ..++.+|.+++.=
T Consensus 313 ~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl~~k--~--p~---~~~l~l~~lm~~k 377 (769)
T KOG1650|consen 313 GLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLSTLGTSLYCK--L--PL---RDSLALGLLMSTK 377 (769)
T ss_pred HHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc--C--ch---hHHHHHHHHHHhh
Confidence 4555667788899999999998 222222222233333444444444221 1 22 3456777766653
No 171
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=38.72 E-value=1.3e+02 Score=32.46 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=46.0
Q ss_pred HHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHH
Q 003517 65 AEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALGI 144 (813)
Q Consensus 65 ~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~ 144 (813)
--++.|+++|. .++-++.+ +..-..+-+.|+-|..|-.+|+..+.+.+-.-+.+++..++++....+
T Consensus 176 lP~iiG~iLGN-----LD~~~r~f--------l~~~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~~ 242 (314)
T PF03812_consen 176 LPIIIGMILGN-----LDPDFRKF--------LAPGVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIPLY 242 (314)
T ss_pred HHHHHHHHHhc-----CCHHHHHH--------HhcCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHH
Confidence 35678999884 22222222 222233345678899999999999999998888888776665554444
Q ss_pred HHH
Q 003517 145 GTS 147 (813)
Q Consensus 145 ~~~ 147 (813)
..-
T Consensus 243 ~~d 245 (314)
T PF03812_consen 243 LAD 245 (314)
T ss_pred HHH
Confidence 333
No 172
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=38.41 E-value=86 Score=33.98 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=30.4
Q ss_pred eeEEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEeec
Q 003517 624 YSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVA 661 (813)
Q Consensus 624 ~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~ 661 (813)
.++++.|.||+|+--.|.+|.+.-...+..+.++++-+
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDT 65 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDT 65 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeC
Confidence 36899999999999999999887554456677887754
No 173
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=38.31 E-value=83 Score=30.45 Aligned_cols=27 Identities=33% Similarity=0.235 Sum_probs=24.5
Q ss_pred cChHHHHHHHHHHhcCCCeEEEEEEee
Q 003517 634 LDDCEALAYGMRMAEHPGIKLTVVKFV 660 (813)
Q Consensus 634 ~ddreAL~~a~rma~~~~v~ltvvr~~ 660 (813)
+.|+|+|+.|.++++..+.+++++-+=
T Consensus 15 ~~~~e~l~~A~~La~~~g~~v~av~~G 41 (164)
T PF01012_consen 15 PVSLEALEAARRLAEALGGEVTAVVLG 41 (164)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEe
Confidence 789999999999999989999998764
No 174
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=38.27 E-value=83 Score=32.48 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=48.3
Q ss_pred EeeEeeccCC-ChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccCCCceEEEec
Q 003517 540 RPMTAISALS-SIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIFVD 608 (813)
Q Consensus 540 ~~~~~vs~~~-~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~apCsVgIlvd 608 (813)
..++-+.|.+ ...++|.+.+.+.++|.|++| |+..-+....+++.+++-++..-+|-++..
T Consensus 17 ~H~tliDP~k~~~~~ei~~~~~~~GTDaImIG--------GS~gvt~~~~~~~v~~ik~~~~lPvilfP~ 78 (240)
T COG1646 17 RHLTLIDPDKTEEADEIAEAAAEAGTDAIMIG--------GSDGVTEENVDNVVEAIKERTDLPVILFPG 78 (240)
T ss_pred eEEEEeCcccccccHHHHHHHHHcCCCEEEEC--------CcccccHHHHHHHHHHHHhhcCCCEEEecC
Confidence 4567888998 899999999999999999999 333333345788888888799999866643
No 175
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=37.88 E-value=42 Score=36.63 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=36.6
Q ss_pred cHHHHHHHHHhhhccCCCCeEEEEEEe---cChHHHHHHHhccC------CCcEEEEccCC
Q 003517 690 GDDAIISDFKSIASKNQESITLEERLV---ESSQEIAGVLKSMN------KCNLFLVGRMA 741 (813)
Q Consensus 690 ~d~~~l~~~~~~~~~~~~~v~y~e~~v---~~~~e~~~~i~~~~------~~DLviVGr~~ 741 (813)
.-.++++.++.++ ..-++.+....| +...+.+.+|+..+ +||++|++|||
T Consensus 27 a~~D~~~~~~~r~--~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGG 85 (319)
T PF02601_consen 27 AIQDFLRTLKRRN--PIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGG 85 (319)
T ss_pred HHHHHHHHHHHhC--CCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCC
Confidence 3457888887776 333566667667 55777888888775 28999999999
No 176
>COG2035 Predicted membrane protein [Function unknown]
Probab=37.41 E-value=5.3e+02 Score=27.42 Aligned_cols=39 Identities=26% Similarity=0.509 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhhc
Q 003517 34 LPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLG 74 (813)
Q Consensus 34 l~~~l~~i~lil~~~~~~~~l~~~l~~P~ii~~ilaGiilG 74 (813)
.|+..--+.-++.+++++.++++. .|..+-...+|+++|
T Consensus 59 i~l~~G~~~~i~~~a~ii~~ll~~--yp~~t~~fF~GlI~~ 97 (276)
T COG2035 59 IPLGIGMLLGIFLFAKIIEYLLEN--YPVPTLAFFAGLILG 97 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHH
Confidence 344444555677778888888877 566666777888887
No 177
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=37.22 E-value=83 Score=30.02 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=26.8
Q ss_pred eEEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 003517 625 SVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFV 660 (813)
Q Consensus 625 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~ 660 (813)
+|++.|.||+|+--.|.++.+...+. -++.++.+.
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~d 35 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLD 35 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeC
Confidence 47899999999999999988866542 356677664
No 178
>COG3371 Predicted membrane protein [Function unknown]
Probab=36.55 E-value=2.4e+02 Score=27.97 Aligned_cols=61 Identities=23% Similarity=0.322 Sum_probs=41.9
Q ss_pred ccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhH
Q 003517 57 PLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSL 129 (813)
Q Consensus 57 ~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~ 129 (813)
|.+-+.-.-++++|+.+.- .| +||.+. ..+.+..+...+++|.+.+-+.....+++++...
T Consensus 73 k~~~~g~~ll~is~lfLaL--VG--------VFpEgt--~pH~~vs~~ffll~fi~~~i~si~~~~~~~~~~~ 133 (181)
T COG3371 73 KIENYGGALLIISGLFLAL--VG--------VFPEGT--PPHVFVSILFFLLSFIAMLIYSIGRLLRNRSGFG 133 (181)
T ss_pred HhhhcchHHHHHHHHHHHh--ee--------eCCCCC--CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 5666665667778876652 22 455443 4556788888889999999999888887555443
No 179
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=36.00 E-value=77 Score=30.61 Aligned_cols=32 Identities=28% Similarity=0.332 Sum_probs=24.7
Q ss_pred eEEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 003517 625 SVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFV 660 (813)
Q Consensus 625 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~ 660 (813)
|+++.|.||+|+.-.|.++.+...+- .++.+.
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~----~vv~~d 32 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKV----PVVFID 32 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTC----EEEEEE
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCC----cEEEEe
Confidence 57899999999999999999998774 566553
No 180
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=35.62 E-value=5.1e+02 Score=26.62 Aligned_cols=89 Identities=11% Similarity=0.071 Sum_probs=48.4
Q ss_pred HHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCcc
Q 003517 110 FLVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLL 189 (813)
Q Consensus 110 F~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~ 189 (813)
+..-+-=+.+.+||+++..+.--..+.++.++.+..++++++. + ..+..+.+-=+...|+...+-++++=.
T Consensus 62 LAvPLY~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl------~---~~~~~Sl~pkSVTtpiAi~is~~iGG~ 132 (215)
T PF04172_consen 62 LAVPLYRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGL------S---PEIILSLAPKSVTTPIAIEISEQIGGI 132 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc------C---HHHHHHHHHHHhhHHHHHHHHHHhCCh
Confidence 3334445678888888887766666666666666555555532 1 123333333233356777777777622
Q ss_pred CChhHHHHHHHHHHHHHHHHHH
Q 003517 190 TTDLGRIAMSAAAVNDVAAWVL 211 (813)
Q Consensus 190 ~s~~g~l~ls~a~i~D~~~~~l 211 (813)
..++....+++-+++.++
T Consensus 133 ----~sLta~~VvitGi~Ga~~ 150 (215)
T PF04172_consen 133 ----PSLTAVFVVITGILGAVL 150 (215)
T ss_pred ----HHHHHHHHHHHhhHHHHh
Confidence 234444444444444433
No 181
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=35.37 E-value=6.4e+02 Score=27.71 Aligned_cols=252 Identities=14% Similarity=0.172 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHH------HHHHHHHh
Q 003517 40 QICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGL------LFFLFLVG 113 (813)
Q Consensus 40 ~i~lil~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl------~~llF~~G 113 (813)
++..+++...+++.-.+|---|.+.--|-.|+++...-+.... +..........+..+-+.|+ .++.+-+|
T Consensus 4 ~~vMi~vg~~liYLai~k~~EPlLLlPigfG~il~N~P~~~~~---~~~~~~~~~g~l~~~~~~gi~~~l~P~LIF~GIG 80 (360)
T PF03977_consen 4 NIVMILVGFLLIYLAIKKKYEPLLLLPIGFGMILVNIPLSGLM---DQPVGGGEIGGLQPIYYFGISNGLFPPLIFMGIG 80 (360)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhcCchhhc---ccccccCCCChHHHHHHHhhhcchhhHHHHHHHh
Confidence 3444555555555556666678888888889888753321110 00000001122333333332 34566788
Q ss_pred hccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCChh
Q 003517 114 LELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDL 193 (813)
Q Consensus 114 le~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~ 193 (813)
--+|+.-+..+.|..+.=+.+++-+ | ..+..+..++. +. ..+..+|++-..=.|..+.- ..++.+.-+
T Consensus 81 AmtDFgpllanP~~~llGaaAQ~Gi-f-~t~~~A~~lGf------~~-~eAAsIgIIGgADGPtsIf~---s~~LAp~Ll 148 (360)
T PF03977_consen 81 AMTDFGPLLANPKTLLLGAAAQFGI-F-ATFLGAILLGF------TP-KEAASIGIIGGADGPTSIFV---SSKLAPHLL 148 (360)
T ss_pred HHHhhHHHHhCHHHHHHHHHHHHhH-H-HHHHHHHHhCC------CH-HHhhHhhhcccCCCcHHHHH---HHhhhHHHH
Confidence 8999999999988855333333322 1 11112222221 11 23444444433222211110 112222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC------CC-CCCchhHH
Q 003517 194 GRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRPVLSLMARRS------PE-GEPVKELY 266 (813)
Q Consensus 194 g~l~ls~a~i~D~~~~~ll~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~------~~-~~~~~e~~ 266 (813)
|-+++++ =.+..++-.+-+|+++-+..+. ++ ++..+...
T Consensus 149 gpIaVaA----------------------------------YsYMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~ek 194 (360)
T PF03977_consen 149 GPIAVAA----------------------------------YSYMALVPIIQPPIMKLLTTKKERKIRMKQLRPVSKTEK 194 (360)
T ss_pred HHHHHHH----------------------------------HHHHHHHhhhhhHHHHHhcCHHHHhccCCCCCCCChHHH
Confidence 2221110 0112222334455555443221 11 22223334
Q ss_pred HHHHHHHHHHHHHHHHHHChhHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhh
Q 003517 267 VCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATS 343 (813)
Q Consensus 267 ~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGL~l~~~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~ 343 (813)
+++-+....+++.+. =...+.+|.+.+|-.+.+ ....+++.+..+.-...+..-+.=..+|..++-+.+.+..+
T Consensus 195 iiFpivv~~~~~ll~--P~a~pLig~Lm~Gnl~rE-sgv~~rLs~taqn~l~nivTi~LGl~vGat~~a~~fL~~~t 268 (360)
T PF03977_consen 195 IIFPIVVTILVGLLL--PSAAPLIGMLMFGNLLRE-SGVVERLSKTAQNELMNIVTIFLGLTVGATMTAETFLNPQT 268 (360)
T ss_pred HHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhcCHHH
Confidence 555555555555542 234689999999999985 44444444443332222222223457788887776665433
No 182
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=34.90 E-value=2.2e+02 Score=31.83 Aligned_cols=25 Identities=16% Similarity=0.377 Sum_probs=20.5
Q ss_pred HHHHHHHHhhHHHHHHHhccccchh
Q 003517 312 KIEDMVSGLFLPLYFAASGLKTNVA 336 (813)
Q Consensus 312 kl~~~~~~~~~plFF~~~G~~~dl~ 336 (813)
.++..+++.+|.+||..+|+.+.-+
T Consensus 55 ~l~~WiNDgLMaiFFf~vGLEiKrE 79 (383)
T PRK14854 55 NLMHWINDGLMAIYFLYIGLEIKRE 79 (383)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4556678899999999999999743
No 183
>COG4059 MtrE Tetrahydromethanopterin S-methyltransferase, subunit E [Coenzyme metabolism]
Probab=34.61 E-value=92 Score=31.50 Aligned_cols=106 Identities=14% Similarity=0.184 Sum_probs=57.2
Q ss_pred CCCCCCCCCCCCCCccCCCCcccC---CCCCCccHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhhcccccC
Q 003517 3 TQQHPPPGACPAPMKATSNGSFQG---ENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSALG 79 (813)
Q Consensus 3 ~~~~~~~~~c~~~~~~~~~g~~~g---~~~~~~~l~~~l~~i~lil~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~lg 79 (813)
.|++++.++-..|.+.+.+.+|+. .+|-.|-+.- -+.+.....+..++++|.+.+..+.-. +...+
T Consensus 32 SQSNPNSQVQLAPQM~~~HR~fNKAvSGEPvsy~l~~--------avagtVa~vlm~~~~L~~l~Al~lGa~-iaA~v-- 100 (304)
T COG4059 32 SQSNPNSQVQLAPQMMNPHRIFNKAVSGEPVSYGLYC--------AVAGTVAYVLMSEFGLPPLFALALGAG-IAACV-- 100 (304)
T ss_pred ccCCCcchhhcchhhcCHHHHhhhcccCCCccchhhh--------hhhHHHHHHHHHHcCCcHHHHHHHHHH-HHHHH--
Confidence 577777777666666666667652 4565544321 122344555677899999877655322 22111
Q ss_pred CchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHH
Q 003517 80 RSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIAL 133 (813)
Q Consensus 80 ~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~ 133 (813)
...+..-+.+|-+---=.-|--+-++.++.....+...++
T Consensus 101 --------------H~~~Avts~mGR~~s~s~F~qPvylD~v~sHlgpI~G~gf 140 (304)
T COG4059 101 --------------HGTFAVTSHMGRIASQSRFGQPVYLDMVRSHLGPIAGHGF 140 (304)
T ss_pred --------------HHHHHHHHHHHHHhhHhhcCCcchHHHHHHhcccccccch
Confidence 1123333444444333344555556677776666554444
No 184
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=34.61 E-value=1.5e+02 Score=31.69 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=33.5
Q ss_pred eeEEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEeecC
Q 003517 624 YSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAP 662 (813)
Q Consensus 624 ~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~ 662 (813)
.+|++.+.||+|+--+|.+..++.++ +++.++++.+.
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~ 58 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHG 58 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCC
Confidence 58999999999999999999999988 99999998753
No 185
>PRK00972 tetrahydromethanopterin S-methyltransferase subunit E; Provisional
Probab=34.28 E-value=2.3e+02 Score=29.59 Aligned_cols=141 Identities=18% Similarity=0.183 Sum_probs=75.2
Q ss_pred CCCCCCCCCCCCCCCccCCCCcccC---CCCCCccHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhhccccc
Q 003517 2 ATQQHPPPGACPAPMKATSNGSFQG---ENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSAL 78 (813)
Q Consensus 2 ~~~~~~~~~~c~~~~~~~~~g~~~g---~~~~~~~l~~~l~~i~lil~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~l 78 (813)
..|++++.++=..|.+-+-+.+++. .+|..|-+.- .++....+.+-.+++|++++.++ |-.+.-.+
T Consensus 32 GSQSNPNSQVQLAPQmg~~HR~fNKAiSGEP~aygl~~---------ai~g~vA~~lm~~~~~~vlAi~~-Ga~vaa~v- 100 (292)
T PRK00972 32 GSQSNPNSQVQLAPQMGNIHRIFNKAISGEPVAYGLWC---------AIAGAVAWALMAFGLNPVLAIIV-GAGVAALV- 100 (292)
T ss_pred ccCCCCcchhhhchhcCcHHHHhhhhccCCCchhHHHH---------HHHHHHHHHHHHcCccHHHHHHH-HHHHHHHH-
Confidence 3577777777666666555666642 4555544321 22233334444889999886443 43333211
Q ss_pred CCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 003517 79 GRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGA 158 (813)
Q Consensus 79 g~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (813)
.....+-+.+|-+-=-=.-|.-+-++.++++-.....-++........++++....+.+ +.
T Consensus 101 ---------------hg~ya~taylGR~asq~~F~QPvylDvl~sh~~~i~~haFIa~Fci~~~~Ylm~~~L~h----PF 161 (292)
T PRK00972 101 ---------------HGVYATTAYLGRIASQSKFGQPVYLDVLRSHTGPIMGHAFIATFCIVTLSYLMTTALGH----PF 161 (292)
T ss_pred ---------------HHHHHHHHHHhHHHHHHhcCCceeHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhccC----CC
Confidence 12233444444444333345555667778777777666666555555555544444443 33
Q ss_pred ChhHHHHHHHHHHh
Q 003517 159 NQAPLLVFMGVSLS 172 (813)
Q Consensus 159 ~~~~~~l~lg~~ls 172 (813)
+....++++|+++.
T Consensus 162 PLPlla~iwGItvG 175 (292)
T PRK00972 162 PLPLLALIWGITVG 175 (292)
T ss_pred chhHHHHHHHHhhc
Confidence 33345677777663
No 186
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=33.60 E-value=8.8e+02 Score=28.80 Aligned_cols=73 Identities=14% Similarity=0.164 Sum_probs=46.5
Q ss_pred HHhhHHHHHHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHH---------hcCCChHHHHHHHHHHhhhhH
Q 003517 318 SGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAW---------SCKVPLRESLALGFIMNTKGL 388 (813)
Q Consensus 318 ~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~---------~~~~~~re~~~lgl~l~~kG~ 388 (813)
..+++|.-..-.|+.+|...+.. .++.+..+.+.+++.-.+.+..... ..++++.+++.+|.++++..-
T Consensus 69 ~~~~LPpIlFe~g~~l~~~~f~~--n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDP 146 (559)
T TIGR00840 69 FLYLLPPIVLDAGYFMPQRNFFE--NLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDP 146 (559)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCch
Confidence 45788888888899999988876 3444433333333332222222111 135699999999999998886
Q ss_pred HHHH
Q 003517 389 VELI 392 (813)
Q Consensus 389 v~l~ 392 (813)
+...
T Consensus 147 VAVl 150 (559)
T TIGR00840 147 VAVL 150 (559)
T ss_pred HHHH
Confidence 6543
No 187
>TIGR01113 mtrE N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit E. coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=32.76 E-value=2.9e+02 Score=28.77 Aligned_cols=142 Identities=14% Similarity=0.129 Sum_probs=74.0
Q ss_pred CCCCCCCCCCCCCCCccCCCCcccC---CCCCCccHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhhccccc
Q 003517 2 ATQQHPPPGACPAPMKATSNGSFQG---ENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSAL 78 (813)
Q Consensus 2 ~~~~~~~~~~c~~~~~~~~~g~~~g---~~~~~~~l~~~l~~i~lil~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~l 78 (813)
..|++++.++=..|.+-+-+.+++. .+|..|-+.-- +.+.+...+....++|++++.++. -.+.-.+
T Consensus 25 GSQsNPNSQVQLAPQmg~~HR~fNKAiSGEP~aygl~~~--------i~g~vA~~l~~~~~~~~ilAi~~G-a~vaa~v- 94 (283)
T TIGR01113 25 GSQSNPNSQVQLAPQMGNLHRIFNKAISGEPVSYGLYCG--------IAGAVAYVLMSYFGLPPLIALAVG-AVIAALV- 94 (283)
T ss_pred ccCCCCcchhhhchhcccHHHHhhhhccCCCchhHHHHH--------HHHHHHHHHHHhcCCchHHHHHHH-HHHHHHH-
Confidence 3577777776666665555566642 45555443211 112222233335689988775443 3333211
Q ss_pred CCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 003517 79 GRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGA 158 (813)
Q Consensus 79 g~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (813)
.....+-+.+|-+-=.=.-|.-+-++.++++-.....-++........++++....+++ +.
T Consensus 95 ---------------~~~ya~tay~GR~asq~~F~QPvylDvl~~~~~~i~~haFIa~fci~~~aYlm~~~L~h----PF 155 (283)
T TIGR01113 95 ---------------HLAYATTAYLGRIASSATFNQPVYLDMLTSHLGPIAGHGFIVTFCMVGVAYLMTLPLKH----PF 155 (283)
T ss_pred ---------------HHHHHHHHHHHHHHhHHhcCCcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhccC----CC
Confidence 12233444455444333345555667778777776666665555544455544444443 33
Q ss_pred ChhHHHHHHHHHHh
Q 003517 159 NQAPLLVFMGVSLS 172 (813)
Q Consensus 159 ~~~~~~l~lg~~ls 172 (813)
+....++++|+++.
T Consensus 156 PlPlla~iwGItvG 169 (283)
T TIGR01113 156 PLPLLAMIWGITIG 169 (283)
T ss_pred chhHHHHHHHHhhc
Confidence 33345677777663
No 188
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=32.56 E-value=4.8e+02 Score=25.44 Aligned_cols=48 Identities=29% Similarity=0.328 Sum_probs=26.2
Q ss_pred hhHHHHHHHHhhcccc---cCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhh
Q 003517 62 RVIAEIIGGVLLGPSA---LGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGL 114 (813)
Q Consensus 62 ~ii~~ilaGiilGP~~---lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gl 114 (813)
.-+..+++|+++||.. .+......+.+++... .++-.|.++--|..|+
T Consensus 34 ~~i~~vlaavllGP~~g~~~a~i~~ll~~l~~~g~-----~~afpg~~~~a~laGl 84 (160)
T TIGR02359 34 QHFVNVIAGVLLGPWYALAVAFIIGLLRNTLGLGT-----VLAFPGGMPGALLAGL 84 (160)
T ss_pred hHHHHHHHHHHHchHHHHHHHHHHHHHHHHhCCCc-----hHHHHHHHHHHHHHHH
Confidence 4677899999999953 2222222232332111 1223366666777777
No 189
>PF04206 MtrE: Tetrahydromethanopterin S-methyltransferase, subunit E ; InterPro: IPR005780 This model describes N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0006814 sodium ion transport, 0005737 cytoplasm, 0012506 vesicle membrane
Probab=32.54 E-value=2.7e+02 Score=28.74 Aligned_cols=142 Identities=15% Similarity=0.130 Sum_probs=71.7
Q ss_pred CCCCCCCCCCCCCCCccCCCCcccC---CCCCCccHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhhccccc
Q 003517 2 ATQQHPPPGACPAPMKATSNGSFQG---ENPLDYALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLGPSAL 78 (813)
Q Consensus 2 ~~~~~~~~~~c~~~~~~~~~g~~~g---~~~~~~~l~~~l~~i~lil~~~~~~~~l~~~l~~P~ii~~ilaGiilGP~~l 78 (813)
..|++++.++=..|.+-+-+.+++. .+|..|-+.-- +.+.+...+...+++|.+++.++. -.+.-.+
T Consensus 25 GSQsNPNSQVQLAPQmg~~HR~fNKAiSGEP~aygl~~a--------i~g~iA~~lm~~~~~~~i~ai~~G-a~vAa~v- 94 (269)
T PF04206_consen 25 GSQSNPNSQVQLAPQMGNIHRIFNKAISGEPPAYGLWCA--------IAGAIAWALMSAFGLNPILAIAIG-AAVAALV- 94 (269)
T ss_pred ccCCCCcchhhcchhcCcHHHHHhhhccCCCchhhHHHH--------HHHHHHHHHHHHcCccHHHHHHHH-HHHHHHH-
Confidence 3577777776666666555666642 45555443211 112222334457889987765443 3333111
Q ss_pred CCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 003517 79 GRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSFVLRSTVLKGA 158 (813)
Q Consensus 79 g~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (813)
.....+-+.+|-+-=.=.-+.-+-++.++.+-.....-++........++++....+. .+.
T Consensus 95 ---------------~g~ya~taylGR~~s~~~F~QPvylDvl~~~~~~i~~haFIa~F~i~~~sYlm~~~L~----hPF 155 (269)
T PF04206_consen 95 ---------------HGVYATTAYLGRIASQKRFGQPVYLDVLRSHTPPIMAHAFIATFCIVTISYLMTLALG----HPF 155 (269)
T ss_pred ---------------HHHHHHHHHhhhHhhHhhcCCCeehHHHhhhchhHHHHHHHHHHHHHHHHHHHHHhcc----CCC
Confidence 1223334444444333333444556677777666666666555444444444444443 333
Q ss_pred ChhHHHHHHHHHHh
Q 003517 159 NQAPLLVFMGVSLS 172 (813)
Q Consensus 159 ~~~~~~l~lg~~ls 172 (813)
+....++++|+++.
T Consensus 156 PlPlla~iwGitvG 169 (269)
T PF04206_consen 156 PLPLLALIWGITVG 169 (269)
T ss_pred chhHHHHHHHHhhc
Confidence 43345677777663
No 190
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=32.24 E-value=3e+02 Score=29.72 Aligned_cols=71 Identities=23% Similarity=0.264 Sum_probs=45.8
Q ss_pred HHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHH
Q 003517 65 AEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALGI 144 (813)
Q Consensus 65 ~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~ 144 (813)
--++.|+++|. .++-++.++. .-..+-..|+-|..|-.+|++.+.+.+-.-+.+++..++++....+
T Consensus 176 lPlliG~ilGN-----LD~~~r~fl~--------~~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~~ 242 (314)
T TIGR00793 176 LPFLVGFALGN-----LDPELRDFFS--------KAVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIPLI 242 (314)
T ss_pred HHHHHHHHHhc-----CCHHHHHHhc--------cCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHH
Confidence 35678999884 2222222222 2222335678899999999999999888888777776666555444
Q ss_pred HHHH
Q 003517 145 GTSF 148 (813)
Q Consensus 145 ~~~~ 148 (813)
....
T Consensus 243 ~~dr 246 (314)
T TIGR00793 243 LADK 246 (314)
T ss_pred HHHH
Confidence 3333
No 191
>PRK09535 btuC corrinoid ABC transporter permease; Reviewed
Probab=31.56 E-value=7.7e+02 Score=27.53 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=19.4
Q ss_pred HhcccCCChhHHHHHHHHhhcccc
Q 003517 54 LLKPLRQPRVIAEIIGGVLLGPSA 77 (813)
Q Consensus 54 l~~~l~~P~ii~~ilaGiilGP~~ 77 (813)
+...+|+|+++.-+++|..++-++
T Consensus 90 iv~~iRlPRil~a~lvGa~LalsG 113 (366)
T PRK09535 90 IVLQIRLPRILLAATVGFALAAAG 113 (366)
T ss_pred hHHHhHHHHHHHHHHHHHHHHHHH
Confidence 445679999999999999988544
No 192
>PRK01658 holin-like protein; Validated
Probab=30.89 E-value=4.4e+02 Score=24.45 Aligned_cols=97 Identities=16% Similarity=0.142 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCh---hHHHHHH--HHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHH
Q 003517 35 PLIILQICLVVAFTRFLAFLLKPLRQPR---VIAEIIG--GVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFL 109 (813)
Q Consensus 35 ~~~l~~i~lil~~~~~~~~l~~~l~~P~---ii~~ila--GiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~ll 109 (813)
..++.|+.+++.+..+...+.+-+++|- ++|.++- .+..|..-..++++ ..--.++++++.|+=
T Consensus 4 ~~~l~~l~il~~~~~~G~~i~~~l~lpiPGsViGmlLL~~~L~~~~ik~~~v~~-----------~a~~Ll~~m~llFVP 72 (122)
T PRK01658 4 VKLLVQIALLYVFALVGTWIQEQLHLPIPGSIIGIFLLLLLLSFKILKLKWIEL-----------GAETLLAELPLFFIP 72 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhCCcCHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 3467888888888888888877666553 3343321 12222111111110 111123444444444
Q ss_pred HHHhhccChhHHHhcchhhHHHHHHHHHHHHHH
Q 003517 110 FLVGLELDIKSILRTGKKSLGIALAGITLPFAL 142 (813)
Q Consensus 110 F~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~ 142 (813)
=.+|+=-..+.+++++.+.+...+.+.++.++.
T Consensus 73 a~VGi~~~~~ll~~~~~~il~~ivvsT~l~l~v 105 (122)
T PRK01658 73 SAVGVMNYGDFLSSKGISLFLVVVISTFVVMIV 105 (122)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666655555444444444443
No 193
>COG0239 CrcB Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]
Probab=30.82 E-value=4.4e+02 Score=24.61 Aligned_cols=42 Identities=12% Similarity=0.070 Sum_probs=20.9
Q ss_pred HHHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003517 325 YFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVA 366 (813)
Q Consensus 325 FF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~ 366 (813)
|=.++-++.|...+.+...+......++..+++-++++++..
T Consensus 78 lTTFSTfs~E~~~L~~~~~~~~a~~yi~~sv~~gl~a~~lG~ 119 (126)
T COG0239 78 LTTFSTFSLETVSLLQEGQYLLALAYILLSVLLGLLAVFLGL 119 (126)
T ss_pred hhhHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555554444333455555555555555555555443
No 194
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=30.81 E-value=5.1e+02 Score=25.16 Aligned_cols=12 Identities=33% Similarity=0.426 Sum_probs=7.1
Q ss_pred chHHHHHHHHHH
Q 003517 305 FAGVLIEKIEDM 316 (813)
Q Consensus 305 ~~~~l~~kl~~~ 316 (813)
.+.++++|+|.+
T Consensus 155 ikNkleN~iEsi 166 (188)
T KOG4050|consen 155 IKNKLENKIESI 166 (188)
T ss_pred HHHHHHHHHhhc
Confidence 445566666665
No 195
>PF01032 FecCD: FecCD transport family; InterPro: IPR000522 This is a subfamily of bacterial binding-protein-dependent transport systems family, and includes transport system permease proteins involved in the transport across the membrane of several compounds. This entry contains the inner components of this multicomponent transport system.; GO: 0005215 transporter activity, 0016020 membrane; PDB: 4DBL_A 1L7V_B 2QI9_B 2NQ2_A.
Probab=28.55 E-value=5.3e+02 Score=28.03 Aligned_cols=62 Identities=23% Similarity=0.363 Sum_probs=36.0
Q ss_pred HHHHHhcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHH
Q 003517 50 FLAFLLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLV 112 (813)
Q Consensus 50 ~~~~l~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~ 112 (813)
.-..+...+|+|+++.-+++|..+|-++.=. ...++.-.-+.+.--++.-+.+|.+..++..
T Consensus 33 ~~~~ii~~~RlPR~l~a~l~G~~La~sG~~l-Q~~~rNpLA~P~iLGissgA~lg~~~~~~~~ 94 (311)
T PF01032_consen 33 IAQFIIWDLRLPRILAAILVGAALALSGALL-QTLTRNPLADPSILGISSGASLGAVLAILLF 94 (311)
T ss_dssp HHHHHHCCTCHHHHHHHHHHHHHHHHHHHHH-HHHTT-TT--TTTTTHHHHHHHHHHHHHHCC
T ss_pred hhhhhhhHHHHHHHHHHHHhHHHHHHHHHHH-HHHhCCCccccccchHhHHHHHHHHHHHHHh
Confidence 3455677889999999999999988544211 0011111112223345567777777766654
No 196
>PRK14208 camphor resistance protein CrcB; Provisional
Probab=28.48 E-value=3.9e+02 Score=24.90 Aligned_cols=39 Identities=8% Similarity=0.124 Sum_probs=17.9
Q ss_pred HHHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHH
Q 003517 325 YFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTV 363 (813)
Q Consensus 325 FF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~ 363 (813)
|=.++-+..|...+.....|......++..+++-+++++
T Consensus 77 fTTFSTf~~e~~~l~~~~~~~~a~~y~~~s~~~gl~a~~ 115 (126)
T PRK14208 77 FTTYSSFNYETLALLEQGRLAAAAAYLLATVLGCLAAAF 115 (126)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 333444445544433333455555555555444444443
No 197
>cd01118 ArsB_permease Anion permease ArsB. These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life.
Probab=27.75 E-value=9.1e+02 Score=27.11 Aligned_cols=24 Identities=17% Similarity=0.558 Sum_probs=15.5
Q ss_pred HHHHHhcccCCChhHHHHHHHHhh
Q 003517 50 FLAFLLKPLRQPRVIAEIIGGVLL 73 (813)
Q Consensus 50 ~~~~l~~~l~~P~ii~~ilaGiil 73 (813)
+..++.++.++|.-+.-+++.+++
T Consensus 10 i~l~~~~~~~i~~~~~al~~~~ll 33 (416)
T cd01118 10 LVLVIWRPFGLPEAVWAVLGAVIA 33 (416)
T ss_pred HHHHHHccCCCChHHHHHHHHHHH
Confidence 344666767788777766666554
No 198
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=27.64 E-value=1.6e+02 Score=27.78 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=45.9
Q ss_pred CChHHHHHHHHHhcCCcEEEecCCcccccCCcccccccchHHHHHHHhccC-CCceEEEecCCCC
Q 003517 549 SSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHA-PCSVGIFVDRGLG 612 (813)
Q Consensus 549 ~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~~n~~vl~~a-pCsVgIlvdrg~~ 612 (813)
....+.+.+++++.+++.||+|...+ .||.........|.+.+++-++. +++| .++|..+.
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~--~~G~~~~~~~~v~~f~~~L~~~~~~ipV-~~~DEr~T 98 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLN--MDGSESEQARRVRKFAEELKKRFPGIPV-ILVDERLT 98 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBB--CTSSC-CCHHHHHHHHHHHHHHH-TSEE-EEEECSCS
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCcc--cCCCccHHHHHHHHHHHHHHHhcCCCcE-EEECCChh
Confidence 57889999999999999999998654 35554444445778887877776 8999 67777443
No 199
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=27.53 E-value=6.4e+02 Score=27.06 Aligned_cols=86 Identities=20% Similarity=0.346 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHH---HHHHhhcccCCCChHHHHH---HHHHHHHH
Q 003517 345 GLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVEL---IVLNIGKDRKVLNDQAFAI---LVLMALFT 418 (813)
Q Consensus 345 ~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l---~~~~~~~~~~~i~~~~~~~---lvl~~vv~ 418 (813)
++..++++.++++=+.+++.....++.++.-++.+|++++. -++.+ ++.......+ ...+.+.. +++++++.
T Consensus 17 ~~G~~vl~ta~la~~s~~~a~~~~~~~~~~~ai~~glvwgl-~I~~lDR~ivss~~~~~~-~~~~~~~~~~R~~lAvlia 94 (301)
T PF14362_consen 17 GIGAAVLFTALLAGLSGGYALYTVFGGPVWAAIPFGLVWGL-VIFNLDRFIVSSIRKSDG-SRKRLLQALPRLLLAVLIA 94 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-HHHHHHHHHHhccccccc-hHHHHHHHHHHHHHHHHHH
Confidence 34445555556666667777777788777666666654211 11111 1111221111 11222222 33666666
Q ss_pred HHhHHHHHHHhhcc
Q 003517 419 TFITTPILMAIYKP 432 (813)
Q Consensus 419 t~i~~plv~~l~~~ 432 (813)
.+++.|+.-.++++
T Consensus 95 ivIs~pl~l~iF~~ 108 (301)
T PF14362_consen 95 IVISEPLELKIFEK 108 (301)
T ss_pred HHHHHHHHHHHHHH
Confidence 67788888888876
No 200
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=27.45 E-value=14 Score=38.77 Aligned_cols=179 Identities=21% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHChhH-HHHHHHHhhhcCCCCCchHHHHHHHHH------------HHHHhhHHHHHHHhccccc
Q 003517 268 CITLSMVLAASFVTDTIGIHA-LFGAFVVGIIMPKEGPFAGVLIEKIED------------MVSGLFLPLYFAASGLKTN 334 (813)
Q Consensus 268 ~~~l~~~l~~~~~ae~~g~~~-~lgaf~aGL~l~~~~~~~~~l~~kl~~------------~~~~~~~plFF~~~G~~~d 334 (813)
...+.+.+..-|++-.-+.++ .+=+.-+|.++.| -|......+.++. +.++++=++-|..+|..+|
T Consensus 21 ~~Mi~v~~~llyLaI~k~~EPlLL~PIgfG~iLvN-iP~ag~~~~~~~~~~G~~~~~~~~gi~~~i~PllIFmGvGAmTD 99 (375)
T COG1883 21 IIMILVGLLLLYLAIVKKFEPLLLLPIGFGGILVN-IPGAGLADTALEGNPGVLALFYKVGIGSGIFPLLIFMGVGAMTD 99 (375)
T ss_pred HHHHHHHHHHHHHHHHhccCceEeeecccceeeec-CCcchhhcccccCCCcHHHHHHHHHhccCcccHHHHhccchhcc
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhHHHHHHHHhhccc--CCCChHHHHHHH
Q 003517 335 VATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGLVELIVLNIGKDR--KVLNDQAFAILV 412 (813)
Q Consensus 335 l~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~v~l~~~~~~~~~--~~i~~~~~~~lv 412 (813)
+..+.....-.+.....=.. +..+++.+...++..+|+..+|.+=+.-|-.++.+.+..... +.+.-..|+-|
T Consensus 100 FgpllanPktllLGaAAQ~G----IF~t~~~A~~lgf~~~eAasIgIIGGADGPTaIy~t~~LAP~Ll~~iAvAAYSYM- 174 (375)
T COG1883 100 FGPLLANPKTLLLGAAAQFG----IFATVFGALALGFTPKEAASIGIIGGADGPTAIYLTNKLAPELLGAIAVAAYSYM- 174 (375)
T ss_pred cchhhcCcHHHHhhhHHHhc----hHHHHHHHHHhCCCHhhhhheeeeccCCCCceEEeccccCHHHHHHHHHHHHHHH-
Q ss_pred HHHHHHHHhHHHHHHHhhcccccCCCCccccccCCCCCccceeEEEe
Q 003517 413 LMALFTTFITTPILMAIYKPARKGVPYKHRTIQRKDTETEFRILACF 459 (813)
Q Consensus 413 l~~vv~t~i~~plv~~l~~~~~~~~~~~~~~i~~~~~~~elriLv~v 459 (813)
-+.-++-||+.+.+..+++| |-|--|-.+-....||+-|+
T Consensus 175 ---ALVPiIQPpimkaLTt~~ER----kIrM~qlR~Vsk~EkIlFPi 214 (375)
T COG1883 175 ---ALVPIIQPPIMKALTTKEER----KIRMTQLRTVSKREKILFPI 214 (375)
T ss_pred ---HHhhhcccHHHHHhcCHHHH----HhhhhccccccchhhhhhhH
No 201
>PRK01821 hypothetical protein; Provisional
Probab=27.18 E-value=5.4e+02 Score=24.29 Aligned_cols=37 Identities=14% Similarity=0.360 Sum_probs=17.8
Q ss_pred HHHHHH--HhccccchhhhhchhhHHHHHHHHHHHHHHHHH
Q 003517 322 LPLYFA--ASGLKTNVATIRGATSWGLLLLVILNACFGKIV 360 (813)
Q Consensus 322 ~plFF~--~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~ 360 (813)
+|+||+ .+|.-...+.+.+ .|+..++.+++.++.=++
T Consensus 71 m~LfFVPa~VGim~~~~ll~~--~~~~il~~ivvST~lvl~ 109 (133)
T PRK01821 71 MALLFVPIGVGVMQYYDLLRA--QFGPIVVSCIVSTLVVLL 109 (133)
T ss_pred HHHHHhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 567777 4555445555554 333333334444333333
No 202
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=27.10 E-value=7.7e+02 Score=26.07 Aligned_cols=41 Identities=27% Similarity=0.489 Sum_probs=27.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhhc
Q 003517 32 YALPLIILQICLVVAFTRFLAFLLKPLRQPRVIAEIIGGVLLG 74 (813)
Q Consensus 32 ~~l~~~l~~i~lil~~~~~~~~l~~~l~~P~ii~~ilaGiilG 74 (813)
+=.|+.+-...-+++.++++.++++. .|..+-....|+++|
T Consensus 56 fL~~l~~G~~~gi~~~s~~i~~ll~~--yp~~t~~fF~GLIlg 96 (257)
T PF04018_consen 56 FLLPLGIGILIGILLFSKVISYLLEN--YPIPTYSFFFGLILG 96 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHH
Confidence 33455555556677777777777776 466777777788877
No 203
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=26.79 E-value=7.1e+02 Score=27.32 Aligned_cols=44 Identities=18% Similarity=0.266 Sum_probs=31.5
Q ss_pred HHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHH
Q 003517 105 LLFFLFLVGLELDIKSILRTGKKSLGIALAGITLPFALGIGTSF 148 (813)
Q Consensus 105 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~ 148 (813)
+-+..|..|..+++..+.+.+-....+++..++++..+++....
T Consensus 205 Lp~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~~R 248 (326)
T PRK05274 205 IPFFAFALGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLADR 248 (326)
T ss_pred HHHHHHHHhcceeHhHHHhcCCcchhhhhhHhhccchhhHhHhh
Confidence 34466778999999988888888887777777766655444443
No 204
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=26.77 E-value=2.7e+02 Score=31.73 Aligned_cols=26 Identities=15% Similarity=0.465 Sum_probs=21.0
Q ss_pred HHHHHHHHhhHHHHHHHhccccchhh
Q 003517 312 KIEDMVSGLFLPLYFAASGLKTNVAT 337 (813)
Q Consensus 312 kl~~~~~~~~~plFF~~~G~~~dl~~ 337 (813)
.+...+++.+|.+||..+|+.+.-+.
T Consensus 67 sl~~wINDgLMaiFFf~VGLEIKrE~ 92 (438)
T PRK14856 67 SLHNWIDDVLMALFFLMIGLEIKREL 92 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788999999999999997433
No 205
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=26.71 E-value=2.9e+02 Score=28.65 Aligned_cols=138 Identities=25% Similarity=0.314 Sum_probs=75.6
Q ss_pred HHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhccC--hhHHHhcchhhHHHHHHHHHHHHHH
Q 003517 65 AEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFLVGLELD--IKSILRTGKKSLGIALAGITLPFAL 142 (813)
Q Consensus 65 ~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d--~~~l~~~~~~~~~ia~~~~~~~~~~ 142 (813)
--++.|++++|..++. ...++..+....-+.+-.+++.+++=-.|...- ++++.+.+...+.-- .+=+-+.++
T Consensus 26 yA~iig~~~~~~~~~~----~~k~~~~~~~~~a~~~~~~~ll~l~ak~g~~vGp~i~~i~~aGpALilQE-~GnlGTill 100 (241)
T PF11299_consen 26 YALIIGMALGPQKLKP----LKKIISEKEMKFAGKLVGIALLPLIAKLGTTVGPNIPKILSAGPALILQE-FGNLGTILL 100 (241)
T ss_pred HHHHHHHHhcchhhcc----cccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHhhHHHHHHH-hcchhhHHH
Confidence 3456788888877622 123444556666777777777777766676554 344555554322221 222244455
Q ss_pred HHHHHHHHHHhhhcCCChhHHHHHHHHHHhhccHHHHHHHHHHcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003517 143 GIGTSFVLRSTVLKGANQAPLLVFMGVSLSITAFPVLARILAELKLLTTDLGRIAMSAAAVNDVAAWVLLALAIAL 218 (813)
Q Consensus 143 ~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~l~~~~ 218 (813)
+.-++.+++... =.+|++.|+.==|-++-+-...+ ++|+.||=+++.=++.-+++-+.+.+...+
T Consensus 101 aLPiAllLGlkR----------EaIGat~SI~REp~laiI~ekYG-ldSpEgrGVl~~Yi~GTvfGtiffsllas~ 165 (241)
T PF11299_consen 101 ALPIALLLGLKR----------EAIGATFSIGREPNLAIISEKYG-LDSPEGRGVLGVYIIGTVFGTIFFSLLASL 165 (241)
T ss_pred HhHHHHHhcccH----------HhhcceeecccCcceeeeehhcC-CCCccccceEEEeeehhhHHHHHHHHHHHH
Confidence 555554443211 13455555443333333344456 578888877776666666666666655543
No 206
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=26.30 E-value=2.7e+02 Score=31.07 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=30.3
Q ss_pred cceeEEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEeecC
Q 003517 622 VSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAP 662 (813)
Q Consensus 622 ~~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~ 662 (813)
+..++++.+.||.|+--|+.++.+. +.++..++|..+
T Consensus 171 ~~~kvlvllSGGiDS~vaa~ll~kr----G~~V~av~~~~~ 207 (371)
T TIGR00342 171 TQGKVLALLSGGIDSPVAAFMMMKR----GCRVVAVHFFNE 207 (371)
T ss_pred cCCeEEEEecCCchHHHHHHHHHHc----CCeEEEEEEeCC
Confidence 3568999999999999999888552 678889999743
No 207
>PRK09777 fecD iron-dicitrate transporter subunit FecD; Reviewed
Probab=26.29 E-value=8.8e+02 Score=26.48 Aligned_cols=57 Identities=18% Similarity=0.240 Sum_probs=33.6
Q ss_pred HhcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCchHHHHHHHHHHHHHHHHH
Q 003517 54 LLKPLRQPRVIAEIIGGVLLGPSALGRSERFLNTVFPKKSMTVLETLANIGLLFFLFL 111 (813)
Q Consensus 54 l~~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~ 111 (813)
+...+|+|+++.-+++|..+|-++.-.. ..++.-.-+.+.--.+.-+.+|.++.++.
T Consensus 46 ii~~~RlPR~l~a~l~G~~LavsG~~lQ-~l~rNpLA~P~iLGissGA~l~~~l~~~~ 102 (318)
T PRK09777 46 VLMEYRLPRLLLALFVGAALAVSGVLVQ-GIVRNPLASPDILGVNHAASLASVGALLL 102 (318)
T ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCCCCcHhhHHHHHHHHHHHHHHH
Confidence 5667899999999999999985542111 11111111223344556667776665544
No 208
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=26.18 E-value=9.6e+02 Score=28.73 Aligned_cols=16 Identities=25% Similarity=0.563 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhhC
Q 003517 241 AVFVIRPVLSLMARRS 256 (813)
Q Consensus 241 ~~~v~~~~~~~i~~~~ 256 (813)
..++.|+++.|+.++.
T Consensus 582 Ai~vtr~l~~~~~~~~ 597 (604)
T PRK12933 582 GIFASRALINLVYGRD 597 (604)
T ss_pred HHHHHHHHHHHHhccc
Confidence 3445666666665543
No 209
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=25.96 E-value=3.4e+02 Score=30.78 Aligned_cols=27 Identities=19% Similarity=0.409 Sum_probs=21.4
Q ss_pred HHHHHHHHhhHHHHHHHhccccchhhh
Q 003517 312 KIEDMVSGLFLPLYFAASGLKTNVATI 338 (813)
Q Consensus 312 kl~~~~~~~~~plFF~~~G~~~dl~~l 338 (813)
.++..+++-+|.+||..+|+.+.-+.+
T Consensus 62 sl~~wINDgLMaiFFf~VGLEIKrE~l 88 (423)
T PRK14855 62 SLEHWVNDGLMAVFFLLVGLEIKRELL 88 (423)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888999999999999974433
No 210
>PRK01821 hypothetical protein; Provisional
Probab=24.91 E-value=5.9e+02 Score=24.01 Aligned_cols=26 Identities=15% Similarity=0.051 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCC
Q 003517 36 LIILQICLVVAFTRFLAFLLKPLRQP 61 (813)
Q Consensus 36 ~~l~~i~lil~~~~~~~~l~~~l~~P 61 (813)
.++.|+.+++.+..+...+.+-+++|
T Consensus 10 ~~l~~l~ill~~~~~Ge~i~~~l~lp 35 (133)
T PRK01821 10 QYLRAFVLIYACLYAGIFIASLLPIT 35 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 46778888888887777777777755
No 211
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=24.65 E-value=2e+02 Score=32.03 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhccChhHHHhcchhhHHHHHH
Q 003517 103 IGLLFFLFLVGLELDIKSILRTGKKSLGIALA 134 (813)
Q Consensus 103 lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~ 134 (813)
.|+.+.|+..|.+.|++.+++..++...+++.
T Consensus 117 ~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG 148 (371)
T KOG2718|consen 117 PGLLSNMLSFGIKLDMDLFAGMIKRPTPLALG 148 (371)
T ss_pred cHHHHHHHHHhcCccHHHHhhHhhCCcceeeh
Confidence 67788899999999999999988888766543
No 212
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=24.19 E-value=2.4e+02 Score=29.69 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=29.8
Q ss_pred eeEEEecCCCcChHHHHHHHHHHhcC--CCeEEEEEEee
Q 003517 624 YSVVVPFFGGLDDCEALAYGMRMAEH--PGIKLTVVKFV 660 (813)
Q Consensus 624 ~~i~v~f~GG~ddreAL~~a~rma~~--~~v~ltvvr~~ 660 (813)
.+|++.+.||+|+--.|.++.++.+. .+.++..+++.
T Consensus 30 ~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd 68 (258)
T PRK10696 30 DRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLD 68 (258)
T ss_pred CEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEec
Confidence 58999999999998888888887654 34678888875
No 213
>PRK14226 camphor resistance protein CrcB; Provisional
Probab=23.48 E-value=6.2e+02 Score=23.71 Aligned_cols=12 Identities=17% Similarity=0.841 Sum_probs=7.7
Q ss_pred HHHHHHHHhhhc
Q 003517 288 ALFGAFVVGIIM 299 (813)
Q Consensus 288 ~~lgaf~aGL~l 299 (813)
.++|+|++|+..
T Consensus 41 Nv~GsfllG~l~ 52 (130)
T PRK14226 41 NIIGSLIIGMMA 52 (130)
T ss_pred HHHHHHHHHHHH
Confidence 356677777665
No 214
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=23.20 E-value=2.1e+02 Score=33.58 Aligned_cols=69 Identities=17% Similarity=0.205 Sum_probs=38.1
Q ss_pred HHhhHHHHHHHhccccchhhhhchhhHHHHHHHH---------HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhhH
Q 003517 318 SGLFLPLYFAASGLKTNVATIRGATSWGLLLLVI---------LNACFGKIVGTVVVAWSCKVPLRESLALGFIMNTKGL 388 (813)
Q Consensus 318 ~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii---------~~~~~~K~~~~~l~~~~~~~~~re~~~lgl~l~~kG~ 388 (813)
..+++|---.-.|.+++-..+... .+-+.... ++....|+.+. ....++++++|++.+|.+++.---
T Consensus 102 f~vLLPpiif~sgy~l~k~~fF~n--~~si~~fa~~Gt~IS~~~ig~gv~~~~~--~~~~~~~~f~d~L~fGaliSATDP 177 (575)
T KOG1965|consen 102 FLVLLPPIIFNSGYSLKKKQFFRN--IGSILLFAIFGTFISAVIIGAGVYLLGF--GLLIYDLSFKDCLAFGALISATDP 177 (575)
T ss_pred HHHhhchhhhcccceechhhhhhh--hHHHHHhhhcceeeehhHHhhHHHHHhc--ccccccccHHHHHHHhhHhcccCc
Confidence 345666655677888887666542 22111111 11112222221 223468899999999998876554
Q ss_pred HH
Q 003517 389 VE 390 (813)
Q Consensus 389 v~ 390 (813)
|.
T Consensus 178 Vt 179 (575)
T KOG1965|consen 178 VT 179 (575)
T ss_pred hH
Confidence 44
No 215
>PRK04148 hypothetical protein; Provisional
Probab=23.15 E-value=1e+02 Score=29.13 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=28.4
Q ss_pred eeccCCChHHHHHHHHHhcCCcEEEecCCccc
Q 003517 544 AISALSSIHEDICASAHRKRAALILLPFHKHQ 575 (813)
Q Consensus 544 ~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~ 575 (813)
++-|...|+..|.++|++.++|++|-|+....
T Consensus 83 sirpp~el~~~~~~la~~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 83 SIRPPRDLQPFILELAKKINVPLIIKPLSGEE 114 (134)
T ss_pred EeCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 55588899999999999999999999997654
No 216
>PRK00536 speE spermidine synthase; Provisional
Probab=22.87 E-value=2e+02 Score=30.54 Aligned_cols=30 Identities=13% Similarity=0.125 Sum_probs=16.8
Q ss_pred ceeEEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEe
Q 003517 623 SYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKF 659 (813)
Q Consensus 623 ~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~ 659 (813)
.+|| +.+||-|- ..++...+||. +++++-+
T Consensus 73 pk~V--LIiGGGDG----g~~REvLkh~~-~v~mVeI 102 (262)
T PRK00536 73 LKEV--LIVDGFDL----ELAHQLFKYDT-HVDFVQA 102 (262)
T ss_pred CCeE--EEEcCCch----HHHHHHHCcCC-eeEEEEC
Confidence 3566 44577663 23444556775 6666654
No 217
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=22.59 E-value=1.8e+02 Score=26.05 Aligned_cols=39 Identities=15% Similarity=0.289 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHhh
Q 003517 135 GITLPFALGIGTSFVLRSTVLKGANQAPLLVFMGVSLSI 173 (813)
Q Consensus 135 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~ 173 (813)
++++|.++|..++.++...++.+..+....+++|++.+.
T Consensus 51 ~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~ 89 (100)
T TIGR02230 51 SVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGC 89 (100)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH
Confidence 456788888888888876654332222334555555543
No 218
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=22.32 E-value=99 Score=35.42 Aligned_cols=49 Identities=14% Similarity=0.222 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhhccCCCCeEEEEEEec---ChHHHHHHHhccCC--CcEEEEccCC
Q 003517 691 DDAIISDFKSIASKNQESITLEERLVE---SSQEIAGVLKSMNK--CNLFLVGRMA 741 (813)
Q Consensus 691 d~~~l~~~~~~~~~~~~~v~y~e~~v~---~~~e~~~~i~~~~~--~DLviVGr~~ 741 (813)
-.++++..+.+. ..-++.+....|- ...+.+.+|+..+. ||++|+||||
T Consensus 149 ~~D~~~~~~~r~--p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGG 202 (438)
T PRK00286 149 IRDILTVLRRRF--PLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGG 202 (438)
T ss_pred HHHHHHHHHhcC--CCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCC
Confidence 446777777765 2234656665562 24677888888877 8999999999
No 219
>PRK14212 camphor resistance protein CrcB; Provisional
Probab=22.12 E-value=3.1e+02 Score=25.60 Aligned_cols=19 Identities=16% Similarity=-0.209 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 003517 237 FVVFAVFVIRPVLSLMARR 255 (813)
Q Consensus 237 ~~~~~~~v~~~~~~~i~~~ 255 (813)
....++.+.|+.+....++
T Consensus 9 ~Gg~~Ga~~Ry~l~~~~~~ 27 (128)
T PRK14212 9 AGGALGAVSRYGLNNLTVK 27 (128)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3445556677776655543
No 220
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=22.08 E-value=1.8e+02 Score=32.14 Aligned_cols=93 Identities=13% Similarity=0.156 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhhHHHH-HHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHH-HHHh
Q 003517 308 VLIEKIEDMVSGLFLPLY-FAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSCKVPLRES-LALG-FIMN 384 (813)
Q Consensus 308 ~l~~kl~~~~~~~~~plF-F~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~re~-~~lg-l~l~ 384 (813)
+-.+-+..++..+|.|.. |.-.|=.+.+..+.+ |+.+=+-+++.++.-.+..|+..+.++.|.+.. +.++ ...+
T Consensus 41 dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~---~wfiPVnv~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~G 117 (408)
T KOG2722|consen 41 DARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQ---WWFIPVNVGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFG 117 (408)
T ss_pred HHHHHhhheeeeeecHHHHHHHHhhhccHHHHHH---HHhhHHHHHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecC
Confidence 333445555567899987 888999999988875 444444445555556677788999999988865 2221 1123
Q ss_pred hhhHHHHHHH-HhhcccCCC
Q 003517 385 TKGLVELIVL-NIGKDRKVL 403 (813)
Q Consensus 385 ~kG~v~l~~~-~~~~~~~~i 403 (813)
..|...+++. .+..+.+..
T Consensus 118 N~gnlpL~Lv~alc~~~~~P 137 (408)
T KOG2722|consen 118 NSGNLPLILVPALCDEDGIP 137 (408)
T ss_pred CcCCcHHHHhHHHhcccCCC
Confidence 3455555443 344444433
No 221
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=22.06 E-value=9.9e+02 Score=25.56 Aligned_cols=21 Identities=10% Similarity=0.233 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 003517 95 TVLETLANIGLLFFLFLVGLE 115 (813)
Q Consensus 95 ~~l~~l~~lgl~~llF~~Gle 115 (813)
.....+..+.+.++|..++..
T Consensus 57 ~~~~~~~k~l~s~lmv~iaf~ 77 (293)
T PF03419_consen 57 FLYSILFKLLISVLMVLIAFG 77 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 445567777777777666654
No 222
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=21.58 E-value=1.1e+03 Score=26.76 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=20.4
Q ss_pred ChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003517 117 DIKSILRTGKKSLGIALAGITLPFALGIGTSFVLR 151 (813)
Q Consensus 117 d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~ 151 (813)
|.+.+.|.+.+.+..-+....+..++|..++..+.
T Consensus 66 ~~~~lg~i~~~~~~~f~~tt~iA~~lgl~~~~l~~ 100 (428)
T PRK01663 66 DMKKVGRVGGKALLYFEIVSTIALIIGLIVVNVVQ 100 (428)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 66666666666655555555555555655555443
No 223
>COG0679 Predicted permeases [General function prediction only]
Probab=21.52 E-value=1e+03 Score=25.63 Aligned_cols=138 Identities=14% Similarity=0.168 Sum_probs=79.8
Q ss_pred hhHHHHHHHHhhhcCC-CCCchHHHHHHHHHHHHHhhHHHHHHHhccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 003517 286 IHALFGAFVVGIIMPK-EGPFAGVLIEKIEDMVSGLFLPLYFAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVV 364 (813)
Q Consensus 286 ~~~~lgaf~aGL~l~~-~~~~~~~l~~kl~~~~~~~~~plFF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l 364 (813)
.+|.+=|+++|+.+.. +-+....+.+-++.+ .+.-.|+=.+..|+.++...... ............-.+...+..++
T Consensus 167 ~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l-~~a~~pl~li~lG~~L~~~~~~~-~~~~~~~~~~~~kll~~Pl~~~~ 244 (311)
T COG0679 167 TNPLIIALILGLLLNLLGISLPAPLDTAVDLL-ASAASPLALIALGLSLAFLKLKG-SKPPIILIALSLKLLLAPLVALL 244 (311)
T ss_pred hCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HHhhhhHHHHHHhhhcchhhhcc-ccchhHHHHHHHHHHHHHHHHHH
Confidence 3566666677776652 223344555666666 78899999999999999854443 22332333333346667778888
Q ss_pred HHHhcCCChHHHHHHHH-HHhhhhHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHhHHHHHHHh
Q 003517 365 VAWSCKVPLRESLALGF-IMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPILMAI 429 (813)
Q Consensus 365 ~~~~~~~~~re~~~lgl-~l~~kG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~plv~~l 429 (813)
.++.++++..+...+=+ ...|.+....+++.. .+ .+++.....+....+.+.++-|.+.+.
T Consensus 245 ~~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~---~~-~~~~laa~~i~ist~ls~~t~p~~~~~ 306 (311)
T COG0679 245 VAKLLGLSGLALQVLVLLSAMPTAVNAYVLARQ---YG-GDPRLAASTILLSTLLSLLTLPLLILL 306 (311)
T ss_pred HHHHcCCChHHHHHHHHHhhCcHHhHHHHHHHH---hC-CChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999987766522111 124555544444433 33 344444444444455566666555443
No 224
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=21.47 E-value=1.4e+02 Score=27.87 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=25.0
Q ss_pred EeeccCCChHHHHHHHHHhcCCcEEEecCCccc
Q 003517 543 TAISALSSIHEDICASAHRKRAALILLPFHKHQ 575 (813)
Q Consensus 543 ~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~ 575 (813)
-++-|...||..|.++|++.++|++|-|+....
T Consensus 75 YSiRPP~El~~~il~lA~~v~adlii~pL~~e~ 107 (127)
T PF03686_consen 75 YSIRPPPELQPPILELAKKVGADLIIRPLGGES 107 (127)
T ss_dssp EEES--TTSHHHHHHHHHHHT-EEEEE-BTTB-
T ss_pred EEeCCChHHhHHHHHHHHHhCCCEEEECCCCCC
Confidence 466688899999999999999999999997654
No 225
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=20.44 E-value=4.9e+02 Score=25.03 Aligned_cols=32 Identities=31% Similarity=0.534 Sum_probs=24.2
Q ss_pred eEEEecCCCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 003517 625 SVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFV 660 (813)
Q Consensus 625 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~ 660 (813)
++++.|.||.|+--++.++.+. +.++..+++.
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~----~~~v~~~~~~ 32 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE----GYEVHALSFD 32 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc----CCcEEEEEEE
Confidence 4789999999999999888763 2345566664
No 226
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=20.29 E-value=1.4e+02 Score=34.09 Aligned_cols=49 Identities=22% Similarity=0.353 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhhccCCCCeEEEEEEecC---hHHHHHHHhccCC---CcEEEEccCC
Q 003517 691 DDAIISDFKSIASKNQESITLEERLVES---SQEIAGVLKSMNK---CNLFLVGRMA 741 (813)
Q Consensus 691 d~~~l~~~~~~~~~~~~~v~y~e~~v~~---~~e~~~~i~~~~~---~DLviVGr~~ 741 (813)
-.++++..+.+.| .-++.+....|-. ..+.+.+|+.++. +|++||||++
T Consensus 143 ~~D~~~~~~~r~p--~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGG 197 (432)
T TIGR00237 143 LADILHILKRRDP--SLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGG 197 (432)
T ss_pred HHHHHHHHHhhCC--CceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCC
Confidence 3467777777652 2234444444422 4566777776655 8999999999
Done!