Query 003517
Match_columns 813
No_of_seqs 301 out of 2042
Neff 8.1
Searched_HMMs 29240
Date Tue Mar 26 17:51:16 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003517.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1567-1571//hhsearch_pdb/003517hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 1.0 1 1 200.3 5.3 303 95-430 58-384 (388)
2 3olq_A Universal stress protei 1.0 1 1 185.4 14.5 293 453-791 8-315 (319)
3 3mt0_A Uncharacterized protein 1.0 1 1 179.8 20.1 262 453-783 8-278 (290)
4 3cis_A Uncharacterized protein 1.0 1 1 175.2 18.0 278 452-782 19-307 (309)
5 3loq_A Universal stress protei 1.0 1 1 174.9 16.7 267 453-783 23-292 (294)
6 3ab8_A Putative uncharacterize 1.0 1 1 159.7 19.2 258 454-780 2-268 (268)
7 3s3t_A Nucleotide-binding prot 1.0 1 1 96.7 8.7 136 453-606 6-145 (146)
8 3dlo_A Universal stress protei 1.0 1 1 94.5 6.9 129 453-606 25-154 (155)
9 3hgm_A Universal stress protei 1.0 1 1 94.4 8.2 140 454-606 4-147 (147)
10 3dlo_A Universal stress protei 1.0 1 1 94.2 9.7 131 621-780 22-155 (155)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=1.00 E-value=1 Score=200.29 Aligned_cols=303 Identities=19% Similarity=0.223 Sum_probs=209.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHH----HHCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 899999999999999998334571579----86061--367899999999999999999999874312799057999999
Q 003517 95 TVLETLANIGLLFFLFLVGLELDIKSI----LRTGK--KSLGIALAGITLPFALGIGTSFVLRSTVLKGANQAPLLVFMG 168 (813)
Q Consensus 95 ~~l~~l~~lgl~lllF~~Gle~d~~~l----~~~~~--~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~ 168 (813)
.....+.+-.+.+|||.+|+|+|.+.+ ++.+| .....++.++++|++++.. +. .+. +......
T Consensus 58 ~l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~~----~~----~~~---~~~~~gw 126 (388)
T 1zcd_A 58 NMLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYLA----FN----YAD---PITREGW 126 (388)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHGG----GC----CSS---TTHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH----CCC---HHHHHHH
T ss_conf 699998657499999999998219984311222456789999999989999999999----81----487---2565556
Q ss_pred HHHHHCCHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9984221999999998717-448846999999999989999999999999940896169999999999999999999899
Q 003517 169 VSLSITAFPVLARILAELK-LLTTDLGRIAMSAAAVNDVAAWVLLALAIALSSSSSSLIAVWVLLSGAAFVVFAVFVIRP 247 (813)
Q Consensus 169 ~~ls~Ts~~vv~~iL~el~-l~~s~lg~l~ls~a~i~Di~~~ill~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~ 247 (813)
.+...|+.+....++..++ ..++..++.+++.+++||+.+|+++++... .. ....+ +...+++.+..
T Consensus 127 ~ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~--~~~~~-l~~~~~~~~~~------ 194 (388)
T 1zcd_A 127 AIPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---ND--LSMAS-LGVAAVAIAVL------ 194 (388)
T ss_dssp SSSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CC--CCHHH-HHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC--CCHHH-HHHHHHHHHHH------
T ss_conf 99999799999999999974276179999999999999999999987774---87--53899-99999999999------
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCC----CCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999745799988615899999999999999999977258899998766247988----82689999988879986589
Q 003517 248 VLSLMARRSPEGEPVKELYVCITLSMVLAASFVTDTIGIHALFGAFVVGIIMPKEG----PFAGVLIEKIEDMVSGLFLP 323 (813)
Q Consensus 248 ~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgafiaGl~i~~~~----~~~~~l~~kl~~~~~~~llp 323 (813)
+..+|.. .+....+..+ . +...+.++..|+|..+|+|++|+++|..+ +..+++++++++++..+++|
T Consensus 195 ---~~l~r~~----v~~~~~y~~l-g-l~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilP 265 (388)
T 1zcd_A 195 ---AVLNLCG----ARRTGVYILV-G-VVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILP 265 (388)
T ss_dssp ---HHHHHTT----CCCTHHHHHH-H-HHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHH
T ss_pred ---HHHHHHC----CHHHHHHHHH-H-HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf ---9998865----3458999999-9-99999999828529999999998546777667898999999989989999999
Q ss_pred HH-HHHHCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99-99840235434330213699999999999999999999999862----------99958899999998666699999
Q 003517 324 LY-FAASGLKTNVATIRGATSWGLLLLVILNACFGKIVGTVVVAWSC----------KVPLRESLALGFIMNTKGLVELI 392 (813)
Q Consensus 324 lF-F~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lgl~l~~kG~v~l~ 392 (813)
+| |+..|.++|....... .-.....+.+..+++|.+|++..++.. +++|+|...+|.+++.+++++++
T Consensus 266 lFaFanaGv~l~~~~~~~l-~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL~ 344 (388)
T 1zcd_A 266 LFAFANAGVSLQGVTLDGL-TSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIF 344 (388)
T ss_dssp HHHHHHCCCCCSSSCCCTH-HHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHHH
T ss_pred HHHHHHCCEEECCCCHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHH
T ss_conf 9999845824236506641-173999999999999999999999999996667699999899999999982420589999
Q ss_pred HHHHHCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9874114677--7767899999999999996899999962
Q 003517 393 VLNIGKDRKV--LNDQAFAILVLMALFTTFITTPILMAIY 430 (813)
Q Consensus 393 l~~~~~~~~~--i~~~~~~~lvl~~vi~t~i~~pli~~l~ 430 (813)
+++++.+.+. ..++.+..+++++++++.+.+.+.++.+
T Consensus 345 Ia~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~~ 384 (388)
T 1zcd_A 345 IASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRL 384 (388)
T ss_dssp HHHHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9998625881556765999999999999999999999863
No 2
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=1.00 E-value=1 Score=185.42 Aligned_cols=293 Identities=9% Similarity=0.063 Sum_probs=189.9
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCC-CHHH---HHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 32578851489812279999742168899823789995312675-1378---9999874089998877888502899999
Q 003517 453 FRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSER-SSAI---AMVQKARNNGLPFWDKKRDDRDYIVIAF 528 (813)
Q Consensus 453 lriLv~i~~~~~~~~~l~l~~~~~~~~~~~~~i~~lhlvel~~r-~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~af 528 (813)
-+||+|+|+++.+..++..+..++.. .+..++++|+++.... .... ......... . ....++.++.+
T Consensus 8 k~ILv~~D~s~~s~~al~~A~~lA~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~l~~~ 78 (319)
T 3olq_A 8 QNLLVVIDPNQDDQPALRRAVYIVQR--NGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKG----V---INQKTAWIKQQ 78 (319)
T ss_dssp CEEEEECCTTCSCCHHHHHHHHHHHH--HCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHH----H---HHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH--CCCEEEEEEEECCCCHHHCCCCCHHHHHHHHHH----H---HHHHHHHHHHH
T ss_conf 63999978975658999999999997--299289999723644322123673458999999----9---99999999999
Q ss_pred HHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 98631582599864764169875898999987238769994377655457863344602189999873018995499855
Q 003517 529 EAYQQLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIFVD 608 (813)
Q Consensus 529 ~~~~~~~~v~v~~~~~vsp~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~apCsV~Ilvd 608 (813)
.......++.++..... .++..+.|++.|++..+||||||.|++...++.+ ++++.++|+++++|||+++.+
T Consensus 79 ~~~~~~~~v~~~~~~~~--~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~------~Gs~~~~vl~~~~~PVlvv~~ 150 (319)
T 3olq_A 79 ARYYLEAGIQIDIKVIW--HNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLI------FTPLDWQLLRKCPAPVWMVKD 150 (319)
T ss_dssp HHHHHHTTCCEEEEEEE--CSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCB------CCHHHHHHHHHCSSCEEEEES
T ss_pred HHHHHHCCCEEEEEEEE--CCCHHHHHHHHHHHCCCCEEEEECCCCCHHHCCC------CCCCHHHHHHCCCCCEEEECC
T ss_conf 99875059838999996--5985999999998529998999267676222000------066478897459987899637
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCC-------HHHHHHHHHHHHCCC--CEEEEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 999998742346652169981679907-------399999999973089--93999999524999875568999984200
Q 003517 609 RGLGGTTQVVASEVSYSVVVPFFGGLD-------DCEALAYGMRMAEHP--GIKLTVVKFVAPKGTSLTFGSDAPGVISI 679 (813)
Q Consensus 609 rg~~~~~~~~~~~~~~~I~v~f~Gg~d-------dreAL~~a~rma~~~--~v~ltvir~~~~~~~~~~~~~~~~~~~~~ 679 (813)
+. ....++|+++++|+++ ++.|+.+|.++++.. +.+++++|+.++...... ...+. ...
T Consensus 151 ~~---------~~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~--~~~~~-~~~ 218 (319)
T 3olq_A 151 KE---------WPEYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIA--IELPD-FDP 218 (319)
T ss_dssp SC---------CCTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCC--TTCTT-CCH
T ss_pred CC---------CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHH--CCCCC-CCH
T ss_conf 65---------6667808999789874336889989999999999974568970899996158535443--14885-457
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHCCC--CCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 346798740108999999985301489985999999169588999973037--986799845799999988765335675
Q 003517 680 DLLRGDNDQVGDDAIISDFKSIASKNQESITLEERLVESSQEIAGVLKSMN--KCNLFLVGRMAPTAPLMDTKSAEYCSE 757 (813)
Q Consensus 680 ~~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~e~~v~~~~~~~~~l~~~~--~~DLiivGr~~~~~GL~~w~~~e~~~e 757 (813)
. ...+..++...+.++++..++ ....+. ......+..+ .+++.++ ++||++||+++ ++|+.+| -
T Consensus 219 ~-~~~~~~~~~~~~~l~~~~~~~--~~~~~~-~~v~~g~~~~--~I~~~a~~~~~dLiV~G~~g-~~~~~~~-------~ 284 (319)
T 3olq_A 219 N-LYNNALRGQHLIAMKELRQKF--SIPEEK-THVKEGLPEQ--VIPQVCEELNAGIVVLGILG-RTGLSAA-------F 284 (319)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHT--TCCGGG-EEEEESCHHH--HHHHHHHHTTEEEEEEECCS-CCSTHHH-------H
T ss_pred H-HHHHHHHHHHHHHHHHHHHHH--CCCCCC-EEEECCCCHH--HHHHHHHHHCCCEEEEECCC-CCCCCCC-------C
T ss_conf 8-999999999999999999982--899561-7983488089--99999987389999995057-6677640-------0
Q ss_pred CCCCHHHHHCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 4311021314799973108999621688899987
Q 003517 758 LGPVGCFLASSEFSTTASVVVLQQYNPTLNLHPL 791 (813)
Q Consensus 758 LG~igd~las~d~~~~~svLvvqq~~~~~~~~~~ 791 (813)
+|.+.+.+... +++|||||..+....-.+.+
T Consensus 285 ~Gsv~~~vl~~---~~~pVLvv~~~~~~~p~~~~ 315 (319)
T 3olq_A 285 LGNTAEQLIDH---IKCDLLAIKPDGFTCPITVD 315 (319)
T ss_dssp HHHHHHHHHTT---CCSEEEEECCTTCCCCC---
T ss_pred CCHHHHHHHHH---CCCCEEEECCCCCCCCCCCC
T ss_conf 21799999851---89988998988887997687
No 3
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=1.00 E-value=1 Score=179.82 Aligned_cols=262 Identities=13% Similarity=0.105 Sum_probs=184.2
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 32578851489812279999742168899823789995312675137899998740899988778885028999999863
Q 003517 453 FRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQ 532 (813)
Q Consensus 453 lriLv~i~~~~~~~~~l~l~~~~~~~~~~~~~i~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~ 532 (813)
-+||+|+|+++.+..++..+..++.. .+..++++|+++ +. . .+..++.+.+..
T Consensus 8 ~~ILv~~D~s~~s~~al~~A~~la~~--~~a~l~ll~v~~-~~-----------------------~-~~~~l~~~~~~~ 60 (290)
T 3mt0_A 8 RSILVVIEPDQLEGLALKRAQLIAGV--TQSHLHLLVCEK-RR-----------------------D-HSAALNDLAQEL 60 (290)
T ss_dssp CEEEEECCSSCSCCHHHHHHHHHHHH--HCCEEEEEEECS-SS-----------------------C-CHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH--CCCEEEEEEEEC-CH-----------------------H-HHHHHHHHHHHH
T ss_conf 05999958985646999999999985--298499999608-48-----------------------8-999999999987
Q ss_pred HCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 15825998647641698758989999872387699943776554578633446021899998730189954998559999
Q 003517 533 QLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIFVDRGLG 612 (813)
Q Consensus 533 ~~~~v~v~~~~~vsp~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~apCsV~Ilvdrg~~ 612 (813)
...++.++..... .++..+.|++.|++..+||||||.|++...++.+ ++++.++++++++|||+++... .
T Consensus 61 ~~~~~~~~~~~~~--~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~------~gs~~~~vl~~~~~PVlvv~~~-~- 130 (290)
T 3mt0_A 61 REEGYSVSTNQAW--KDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAI------LTPDDWKLLRFAPCPVLMTKTA-R- 130 (290)
T ss_dssp HHTTCCEEEEEEC--SSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTS------CCHHHHHHHHHCSSCEEEECCC-S-
T ss_pred HHCCCEEEEEEEE--CCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHCC------CCHHHHHHHHCCCCCEEEECCC-C-
T ss_conf 6279758999996--7987999999998459999999145687322102------1777899986399878995278-7-
Q ss_pred CCCCCCCCCCCEEEEEECCCCCC-------HHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98742346652169981679907-------39999999997308993999999524999875568999984200346798
Q 003517 613 GTTQVVASEVSYSVVVPFFGGLD-------DCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGD 685 (813)
Q Consensus 613 ~~~~~~~~~~~~~I~v~f~Gg~d-------dreAL~~a~rma~~~~v~ltvir~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (813)
.. ..++|+++++|+++ ++.|+.+|.++++..+++++++|+.++..... ..+.. . ..+
T Consensus 131 ------~~-~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~----~~~~~-~----~~~ 194 (290)
T 3mt0_A 131 ------PW-TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSS----ADPTF-Q----LSE 194 (290)
T ss_dssp ------CS-TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC-------------CH-H----HHH
T ss_pred ------CC-CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCC----CCCHH-H----HHH
T ss_conf ------77-78839999778876504667899999999999987398699999966764334----57225-7----899
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHCCCC--CCEEEECCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 7401089999999853014899859999991695889999730379--86799845799999988765335675431102
Q 003517 686 NDQVGDDAIISDFKSIASKNQESITLEERLVESSQEIAGVLKSMNK--CNLFLVGRMAPTAPLMDTKSAEYCSELGPVGC 763 (813)
Q Consensus 686 ~~~~~d~~~l~~~~~~~~~~~~~v~~~e~~v~~~~~~~~~l~~~~~--~DLiivGr~~~~~GL~~w~~~e~~~eLG~igd 763 (813)
..++..++.++++..++ +-..+. ......+..+ .+++.+++ +||++||+++ ++|+.+| -+|.+.+
T Consensus 195 ~~~~~~~~~l~~~~~~~--g~~~~~-~~v~~g~~~~--~I~~~a~~~~~dLiVmG~~g-~~~~~~~-------~~Gsv~~ 261 (290)
T 3mt0_A 195 TIEARYREACRTFQAEY--GFSDEQ-LHIEEGPADV--LIPRTAQKLDAVVTVIGTVA-RTGLSGA-------LIGNTAE 261 (290)
T ss_dssp HHHHHHHHHHHHHHHHH--TCCTTT-EEEEESCHHH--HHHHHHHHHTCSEEEEECCS-SCCGGGC-------CSCHHHH
T ss_pred HHHHHHHHHHHHHHHHC--CCCCCE-EEEECCCHHH--HHHHHHHHCCCCEEEECCCC-CCCCCCE-------ECCHHHH
T ss_conf 99999999999999981--999436-9993358889--99999876299999978888-7677553-------4355899
Q ss_pred HHHCCCCCCCCCEEEEEECC
Q ss_conf 13147999731089996216
Q 003517 764 FLASSEFSTTASVVVLQQYN 783 (813)
Q Consensus 764 ~las~d~~~~~svLvvqq~~ 783 (813)
.+... +++|||||..+.
T Consensus 262 ~vl~~---~~~pVLvv~~~~ 278 (290)
T 3mt0_A 262 VVLDT---LESDVLVLKPDD 278 (290)
T ss_dssp HHHTT---CSSEEEEECCHH
T ss_pred HHHHC---CCCCEEEECCCC
T ss_conf 99962---899889989877
No 4
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=1.00 E-value=1 Score=175.16 Aligned_cols=278 Identities=15% Similarity=0.152 Sum_probs=182.3
Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCH-----HHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 63257885148981227999974216889982378999531267513-----7899998740899988778885028999
Q 003517 452 EFRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSS-----AIAMVQKARNNGLPFWDKKRDDRDYIVI 526 (813)
Q Consensus 452 elriLv~i~~~~~~~~~l~l~~~~~~~~~~~~~i~~lhlvel~~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 526 (813)
--+||+|+|+++.+..++..+..++.. .+..++++|+++...... +.-.....+ ...++.++
T Consensus 19 ~~~ILv~~D~s~~s~~al~~A~~lA~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~ 85 (309)
T 3cis_A 19 SLGIIVGIDDSPAAQVAVRWAARDAEL--RKIPLTLVHAVSPEVATWLEVPLPPGVLRWQQ-----------DHGRHLID 85 (309)
T ss_dssp TTEEEEECCSSHHHHHHHHHHHHHHHH--HTCCEEEEEECCCCCCCTTCCCCCHHHHHHHH-----------HHHHHHHH
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHH--CCCCEEEEEEECCCCCCCCCCCCCCHHHHHHH-----------HHHHHHHH
T ss_conf 870899979987799999999999986--69929999996575444566778820568999-----------99999999
Q ss_pred HHHHHH-HC----CCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 999863-15----8259986476416987589899998723876999437765545786334460218999987301899
Q 003517 527 AFEAYQ-QL----SSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPC 601 (813)
Q Consensus 527 af~~~~-~~----~~v~v~~~~~vsp~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~apC 601 (813)
.+.+.. +. .++.++.... .++..+.|++.|+ ++||||||.|++.+..+.+ ++++.++|+++++|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~------~Gs~~~~vl~~~~~ 154 (309)
T 3cis_A 86 DALKVVEQASLRAGPPTVHSEIV---PAAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRL------LGSVSSGLLRHAHC 154 (309)
T ss_dssp HHHHHHHHHCSSSCCSCEEEEEE---SSCHHHHHHHHGG--GEEEEEEESSCTTCCTTCC------SCHHHHHHHHHCSS
T ss_pred HHHHHHHHHCCCCCCCEEEEEEE---CCCHHHHHHHHHC--CCCEEEECCCCCCCCCCCC------CCCHHHHHHHHCCC
T ss_conf 99999987315688953899994---4898999998725--8999998789986544430------57479999984899
Q ss_pred CEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 54998559999987423466521699816799073999999999730899399999952499987556899998420034
Q 003517 602 SVGIFVDRGLGGTTQVVASEVSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDL 681 (813)
Q Consensus 602 sV~Ilvdrg~~~~~~~~~~~~~~~I~v~f~Gg~ddreAL~~a~rma~~~~v~ltvir~~~~~~~~~~~~~~~~~~~~~~~ 681 (813)
||.++..+... ......++|+++++|++.++.|+.+|.++++..+.+++++++.++..... . +.
T Consensus 155 PVlvv~~~~~~-----~~~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~---~--~~------ 218 (309)
T 3cis_A 155 PVVIIHDEDSV-----MPHPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSE---W--PG------ 218 (309)
T ss_dssp CEEEECTTCCC-----SCSSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTT---C--SS------
T ss_pred CEEEECCCCCC-----CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCC---C--CC------
T ss_conf 78997477666-----77777873999927986899999999999875699899999961654467---7--85------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCC-CCCEEEEEEEECCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 679874010899999998530148-9985999999169588999973037986799845799999988765335675431
Q 003517 682 LRGDNDQVGDDAIISDFKSIASKN-QESITLEERLVESSQEIAGVLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGP 760 (813)
Q Consensus 682 ~~~~~~~~~d~~~l~~~~~~~~~~-~~~v~~~e~~v~~~~~~~~~l~~~~~~DLiivGr~~~~~GL~~w~~~e~~~eLG~ 760 (813)
.+.+..++..++.+++...+. .. ...+.++.++. .+.....+++.++++||++||+++ ++++.+| -+|.
T Consensus 219 ~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~-~g~~~~~I~~~a~~adliV~G~~~-~~~~~~~-------l~Gs 288 (309)
T 3cis_A 219 IDWPATQSMAEQVLAERLAGW-QERYPNVAITRVVV-RDQPARQLVQRSEEAQLVVVGSRG-RGGYAGM-------LVGS 288 (309)
T ss_dssp CCHHHHHHHHHHHHHHHHTTH-HHHCTTSCEEEEEE-SSCHHHHHHHHHTTCSEEEEESSC-SSCCTTC-------SSCH
T ss_pred CCHHHHHHHHHHHHHHHHHHH-HHHCCCCCEEEEEE-CCCHHHHHHHHHCCCCEEEECCCC-CCCCCCC-------CCCC
T ss_conf 457889999999999999998-86489971899997-179899999863779999988899-8776413-------3274
Q ss_pred CHHHHHCCCCCCCCCEEEEEEC
Q ss_conf 1021314799973108999621
Q 003517 761 VGCFLASSEFSTTASVVVLQQY 782 (813)
Q Consensus 761 igd~las~d~~~~~svLvvqq~ 782 (813)
+.+.+... ++++||||..+
T Consensus 289 v~~~vl~~---~~~pVlvv~~~ 307 (309)
T 3cis_A 289 VGETVAQL---ARTPVIVARES 307 (309)
T ss_dssp HHHHHHHH---CSSCEEEECC-
T ss_pred HHHHHHHC---CCCCEEEECCC
T ss_conf 89999856---99888995798
No 5
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=1.00 E-value=1 Score=174.88 Aligned_cols=267 Identities=11% Similarity=0.096 Sum_probs=182.1
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 32578851489812279999742168899823789995312675137899998740899988778885028999999863
Q 003517 453 FRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAYQ 532 (813)
Q Consensus 453 lriLv~i~~~~~~~~~l~l~~~~~~~~~~~~~i~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~ 532 (813)
-+||+|+|+++.+..++..+..++. ..+..++++|+++.+...... .........+......++.++.+.+..
T Consensus 23 ~~ILv~vD~s~~s~~al~~A~~lA~--~~~a~l~ll~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~ 95 (294)
T 3loq_A 23 NAMLLPTDLSENSFKVLEYLGDFKK--VGVEEIGVLFVINLTKLSTVS-----GGIDIDHYIDEMSEKAEEVLPEVAQKI 95 (294)
T ss_dssp CEEEEECCSCTGGGGGGGGHHHHHH--TTCCEEEEECCEECTTC----------CCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHH--HCCCEEEEEEEECCCCCCCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3089951798889999999999875--169889999982476644445-----564689999999999999999999999
Q ss_pred HCCCEEEEE-EEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 158259986-4764169875898999987238769994377655457863344602189999873018995499855999
Q 003517 533 QLSSVTVRP-MTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIFVDRGL 611 (813)
Q Consensus 533 ~~~~v~v~~-~~~vsp~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~apCsV~Ilvdrg~ 611 (813)
...++.++. ... ..++..+.| .+++.++||||||.|++....+.+ ++++.+++++++||||.++.+..
T Consensus 96 ~~~g~~~~~~~v~--~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~------~Gs~~~~vl~~~~~PVlvv~~~~- 164 (294)
T 3loq_A 96 EAAGIKAEVIKPF--PAGDPVVEI--IKASENYSFIAMGSRGASKFKKIL------LGSVSEGVLHDSKVPVYIFKHDM- 164 (294)
T ss_dssp HHTTCEEEECSSC--CEECHHHHH--HHHHTTSSEEEEECCCCCHHHHHH------HCCHHHHHHHHCSSCEEEECCCT-
T ss_pred HHCCCCCCEEEEE--CCCCHHHHE--EECCCCCCEEEECCCCCCCCCCEE------ECCHHHHHHHCCCCCEEEECCCC-
T ss_conf 9769985046761--357803712--554589999998479876531456------44278999745799889966755-
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 99874234665216998167990739999999997308993999999524999875568999984200346798740108
Q 003517 612 GGTTQVVASEVSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGD 691 (813)
Q Consensus 612 ~~~~~~~~~~~~~~I~v~f~Gg~ddreAL~~a~rma~~~~v~ltvir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 691 (813)
. .....++|+++++|+++++.|+.+|.++++..+.+++++++.++.. .++.-
T Consensus 165 ~------~~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~----------------------~~~~l 216 (294)
T 3loq_A 165 V------VNSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD----------------------KTADL 216 (294)
T ss_dssp T------TTCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC----------------------CHHHH
T ss_pred C------CCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCH----------------------HHHHH
T ss_conf 6------6766777999978987999999999997630399899999745803----------------------89999
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHCCC--CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 999999985301489985999999169588999973037--986799845799999988765335675431102131479
Q 003517 692 DAIISDFKSIASKNQESITLEERLVESSQEIAGVLKSMN--KCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSE 769 (813)
Q Consensus 692 ~~~l~~~~~~~~~~~~~v~~~e~~v~~~~~~~~~l~~~~--~~DLiivGr~~~~~GL~~w~~~e~~~eLG~igd~las~d 769 (813)
+++.+.++... -.+. .. +..+.....+++.++ ++||+++|+++ ++++.+| -+|.+.+.+...
T Consensus 217 ~~~~~~l~~~~----~~~~-~~--~~~g~~~~~I~~~a~~~~~dLlV~G~~~-~~~~~~~-------~~Gs~~~~vl~~- 280 (294)
T 3loq_A 217 RVMEEVIGAEG----IEVH-VH--IESGTPHKAILAKREEINATTIFMGSRG-AGSVMTM-------ILGSTSESVIRR- 280 (294)
T ss_dssp HHHHHHHHHTT----CCEE-EE--EECSCHHHHHHHHHHHTTCSEEEEECCC-CSCHHHH-------HHHCHHHHHHHH-
T ss_pred HHHHHHHHHCC----CCEE-EE--EECCCHHHHHHHHHHHCCCCEEEEECCC-CCCCCCE-------EECCHHHHHHHC-
T ss_conf 99999998769----9579-99--9369878999999976595999995799-9876535-------627689999964-
Q ss_pred CCCCCCEEEEEECC
Q ss_conf 99731089996216
Q 003517 770 FSTTASVVVLQQYN 783 (813)
Q Consensus 770 ~~~~~svLvvqq~~ 783 (813)
+++|||||.+..
T Consensus 281 --~~~pvLvv~~~~ 292 (294)
T 3loq_A 281 --SPVPVFVCKRGD 292 (294)
T ss_dssp --CSSCEEEECSCT
T ss_pred --CCCCEEEECCCC
T ss_conf --999899978999
No 6
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=1.00 E-value=1 Score=159.75 Aligned_cols=258 Identities=12% Similarity=0.050 Sum_probs=171.5
Q ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCCC--------CCCCCCCHHHH
Q ss_conf 2578851489812279999742168899823789995312675137899998740899988--------77888502899
Q 003517 454 RILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFW--------DKKRDDRDYIV 525 (813)
Q Consensus 454 riLv~i~~~~~~~~~l~l~~~~~~~~~~~~~i~~lhlvel~~r~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i~ 525 (813)
+||+|+|+++.+..++..+..++.. .+..++++|+++......... ... ....... .......++.+
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~~--~~a~l~ll~v~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l 76 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAYK--LSAPLTVLFVVDTRLARIPEL--LDF-GALTVPVPVLRTELERALALRGEAVL 76 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHHH--HTCCEEEEEEEEHHHHTHHHH--C--------CHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHHHHHHH--HCCCEEEEEEECCCCCCCCCC--CCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2899847877789999999999997--099399999950577665543--470-67789988777888899999999999
Q ss_pred HHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCC-CCCCCCCCCCCCHHHHHHHHHCCCCCCEE
Q ss_conf 99998631582599864764169875898999987238769994377655-45786334460218999987301899549
Q 003517 526 IAFEAYQQLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQ-RLDGAMESLGHTFHLVNRRALQHAPCSVG 604 (813)
Q Consensus 526 ~af~~~~~~~~v~v~~~~~vsp~~~m~~dI~~~A~e~~~dLIIlp~h~~~-~~~g~~~~~~~~~r~vn~~Vl~~apCsV~ 604 (813)
+.+.+.....++.++..... ++..+.|++. +.++||||||.|+++ ...+.+ +|++.++|++++||||.
T Consensus 77 ~~~~~~~~~~g~~~~~~~~~---g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~------~Gs~~~~v~~~a~~PVl 145 (268)
T 3ab8_A 77 ERVRQSALAAGVAVEAVLEE---GVPHEAILRR--ARAADLLVLGRSGEAHGDGFGG------LGSTADRVLRASPVPVL 145 (268)
T ss_dssp HHHHHHHHHTTCCEEEEEEE---ECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCS------CCHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHHCCCCEEEEEEC---CCHHHHHHHH--CCCCCEEEEECCCCCCCCCCCC------CCHHHHHHHHHCCCCEE
T ss_conf 99999998579971898706---9878999961--4699889992667876533345------46669999984799889
Q ss_pred EEECCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98559999987423466521699816799073999999999730899399999952499987556899998420034679
Q 003517 605 IFVDRGLGGTTQVVASEVSYSVVVPFFGGLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRG 684 (813)
Q Consensus 605 Ilvdrg~~~~~~~~~~~~~~~I~v~f~Gg~ddreAL~~a~rma~~~~v~ltvir~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (813)
++... . ...++|+++++|+++++.|+.+|.++++..+++++++|+.++..
T Consensus 146 vv~~~-~---------~~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~-------------------- 195 (268)
T 3ab8_A 146 LAPGE-P---------VELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDPA-------------------- 195 (268)
T ss_dssp EECSS-C---------CCCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHH--------------------
T ss_pred EECCC-C---------CCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCHH--------------------
T ss_conf 97888-7---------87778999978987899999999996520798799999728478--------------------
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 87401089999999853014899859999991695889999730379867998457999999887653356754311021
Q 003517 685 DNDQVGDDAIISDFKSIASKNQESITLEERLVESSQEIAGVLKSMNKCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCF 764 (813)
Q Consensus 685 ~~~~~~d~~~l~~~~~~~~~~~~~v~~~e~~v~~~~~~~~~l~~~~~~DLiivGr~~~~~GL~~w~~~e~~~eLG~igd~ 764 (813)
..++.+++..... .. ..+.++.++. .+.....+++.++++||++||+ + +.+| -+|.+.+.
T Consensus 196 -----~~~~~l~~~~~~l-~~-~~~~~~~~~~-~g~~~~~i~~~a~~~dliV~G~-~----~~~~-------~~Gs~~~~ 255 (268)
T 3ab8_A 196 -----RAEAWALEAEAYL-RD-HGVEASALVL-GGDAADHLLRLQGPGDLLALGA-P----VRRL-------VFGSTAER 255 (268)
T ss_dssp -----HHHHHHHHHHHHH-HH-TTCCEEEEEE-CSCHHHHHHHHCCTTEEEEEEC-C----CSCC-------SSCCHHHH
T ss_pred -----HHHHHHHHHHHHH-HH-CCCCEEEEEE-CCCHHHHHHHHHHHCCEEEECC-C----CCCC-------EECCHHHH
T ss_conf -----8999999999999-87-5994699991-7985999999997699999998-6----1326-------86627999
Q ss_pred HHCCCCCCCCCEEEEE
Q ss_conf 3147999731089996
Q 003517 765 LASSEFSTTASVVVLQ 780 (813)
Q Consensus 765 las~d~~~~~svLvvq 780 (813)
+... +++|||||.
T Consensus 256 vl~~---~~~pvlvv~ 268 (268)
T 3ab8_A 256 VIRN---AQGPVLTAR 268 (268)
T ss_dssp HHHH---CSSCEEEEC
T ss_pred HHHC---CCCCEEEEC
T ss_conf 9855---999889939
No 7
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=1.00 E-value=1 Score=96.69 Aligned_cols=136 Identities=13% Similarity=0.108 Sum_probs=78.5
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCHHHH--HHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 3257885148981227999974216889982378999531267513789--99987408999887788850289999998
Q 003517 453 FRILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIA--MVQKARNNGLPFWDKKRDDRDYIVIAFEA 530 (813)
Q Consensus 453 lriLv~i~~~~~~~~~l~l~~~~~~~~~~~~~i~~lhlvel~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 530 (813)
-+||+|+|+++.+..++..+..++.. .+..++++|+++.+....... ......+. . ....++.++.+.+
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~l~~~~~ 76 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQR--HQANLTALYVVDDSAYHTPALDPVLSELLDA----E---AAHAKDAMRQRQQ 76 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHH--HTCEEEEEEEEECCCCCCGGGHHHHHHHHHH----H---HHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHH--CCCEEEEEEEECCCCCCCCCCCCCCHHHHHH----H---HHHHHHHHHHHHH
T ss_conf 66999747998899999999999986--1998999999627544554444240899999----9---9999999999999
Q ss_pred HHHCCCE-EEEEEEEECCCCCHHHHHHH-HHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEE
Q ss_conf 6315825-99864764169875898999-9872387699943776554578633446021899998730189954998
Q 003517 531 YQQLSSV-TVRPMTAISALSSIHEDICA-SAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIF 606 (813)
Q Consensus 531 ~~~~~~v-~v~~~~~vsp~~~m~~dI~~-~A~e~~~dLIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~apCsV~Il 606 (813)
..+..++ .++.....+ +..+.|++ .|++.++||||||.|++.+..+.+ +|++.++|++++||||+++
T Consensus 77 ~~~~~g~~~~~~~~~~g---~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlvV 145 (146)
T 3s3t_A 77 FVATTSAPNLKTEISYG---IPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVA------VGSTTSYVVDHAPCNVIVI 145 (146)
T ss_dssp HHTTSSCCCCEEEEEEE---CHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCS------SCHHHHHHHHHCSSEEEEE
T ss_pred HHHHCCCCCEEEEEECC---CHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEE------ECCHHHHHHCCCCCCEEEE
T ss_conf 99865975259999538---848999999886539999998899998761278------7345889961499998984
No 8
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=1.00 E-value=1 Score=94.47 Aligned_cols=129 Identities=12% Similarity=0.072 Sum_probs=87.9
Q ss_pred CEEEEEEEC-CCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 325788514-8981227999974216889982378999531267513789999874089998877888502899999986
Q 003517 453 FRILACFHS-TRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNGLPFWDKKRDDRDYIVIAFEAY 531 (813)
Q Consensus 453 lriLv~i~~-~~~~~~~l~l~~~~~~~~~~~~~i~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 531 (813)
-+||+|+|+ ++.+..++..+..++.. .+..++++|+++..+...... . ...++.++.+.+.
T Consensus 25 ~~ILv~vD~~s~~s~~al~~A~~la~~--~~a~l~llhV~~~~~~~~~~~--~--------------~~~~~~l~~~~~~ 86 (155)
T 3dlo_A 25 MPIVVAVDKKSDRAERVLRFAAEEARL--RGVPVYVVHSLPGGGRTKDED--I--------------IEAKETLSWAVSI 86 (155)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHH--HTCCEEEEEEECCSTTSCHHH--H--------------HHHHHHHHHHHHH
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHH--CCCEEEEEEEECCCCCCCHHH--H--------------HHHHHHHHHHHHH
T ss_conf 829999789997799999999999986--599899999976887654899--9--------------9999999999999
Q ss_pred HHCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEE
Q ss_conf 315825998647641698758989999872387699943776554578633446021899998730189954998
Q 003517 532 QQLSSVTVRPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIF 606 (813)
Q Consensus 532 ~~~~~v~v~~~~~vsp~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~apCsV~Il 606 (813)
.+..++.++..+.+ ..++..+.|++.|++.++||||||.|++.+..+.+ +|++.++|++++||||+++
T Consensus 87 ~~~~g~~~~~~~~v-~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~------lGSv~~~vl~~a~~PVLvV 154 (155)
T 3dlo_A 87 IRKEGAEGEEHLLV-RGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLI------FGSVARDVILKANKPVICI 154 (155)
T ss_dssp HHHTTCCEEEEEEE-SSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEE------CCHHHHHHHHHCSSCEEEE
T ss_pred HHHCCCCCEEEEEE-CCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCEE------ECCHHHHHHHHCCCCEEEE
T ss_conf 98539972599996-27997999999998719899998789988887778------5618999998399988995
No 9
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=1.00 E-value=1 Score=94.38 Aligned_cols=140 Identities=14% Similarity=0.097 Sum_probs=83.3
Q ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHCC-CCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 257885148981227999974216889982378999531267513789999874089-9988778885028999999863
Q 003517 454 RILACFHSTRNIPSLINLVESSRGRKRGKLCLYAMHLMELSERSSAIAMVQKARNNG-LPFWDKKRDDRDYIVIAFEAYQ 532 (813)
Q Consensus 454 riLv~i~~~~~~~~~l~l~~~~~~~~~~~~~i~~lhlvel~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~af~~~~ 532 (813)
+||+|+|+++++..++..+..++.. .+.+++++|+++.+....... ....... ...........++.++.+.+..
T Consensus 4 ~ILv~vD~s~~s~~al~~A~~la~~--~~a~l~ll~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (147)
T 3hgm_A 4 RIMVPVDGSKGAVKALEKGVGLQQL--TGAELYILCVFKHHSLLEASL--SMARPEQLDIPDDALKDYATEIAVQAKTRA 79 (147)
T ss_dssp EEEEECCSBHHHHHHHHHHHHHHHH--HCCEEEEEEEECCHHHHHHTB--SSCCCGGGCCCTTHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHH--CCCEEEEEEEECCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2999858977789999999999975--499899999945755443100--136703566679999999999999999999
Q ss_pred HCCCEEE---EEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEE
Q ss_conf 1582599---8647641698758989999872387699943776554578633446021899998730189954998
Q 003517 533 QLSSVTV---RPMTAISALSSIHEDICASAHRKRAALILLPFHKHQRLDGAMESLGHTFHLVNRRALQHAPCSVGIF 606 (813)
Q Consensus 533 ~~~~v~v---~~~~~vsp~~~m~~dI~~~A~e~~~dLIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~apCsV~Il 606 (813)
+..++.+ +..... ++..+.|++.|++.++||||||.|++.+..+.+ +|++.++|++++||||+++
T Consensus 80 ~~~g~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlvV 147 (147)
T 3hgm_A 80 TELGVPADKVRAFVKG---GRPSRTIVRFARKRECDLVVIGAQGTNGDKSLL------LGSVAQRVAGSAHCPVLVV 147 (147)
T ss_dssp HHTTCCGGGEEEEEEE---SCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCC------CCHHHHHHHHHCSSCEEEC
T ss_pred HHCCCCCCCEEEEEEC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCEE------ECCHHHHHHHHCCCCEEEC
T ss_conf 8669986531789954---887999999999809999999379876530225------5338999996289988979
No 10
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=1.00 E-value=1 Score=94.18 Aligned_cols=131 Identities=16% Similarity=0.161 Sum_probs=94.4
Q ss_pred CCCEEEEEECCC-CCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 652169981679-9073999999999730899399999952499987556899998420034679874010899999998
Q 003517 621 EVSYSVVVPFFG-GLDDCEALAYGMRMAEHPGIKLTVVKFVAPKGTSLTFGSDAPGVISIDLLRGDNDQVGDDAIISDFK 699 (813)
Q Consensus 621 ~~~~~I~v~f~G-g~ddreAL~~a~rma~~~~v~ltvir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 699 (813)
..+++|+++++| ++.++.|+.+|.++|+..+++|+++++.++.... .+..++..++.++++.
T Consensus 22 mm~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~-----------------~~~~~~~~~~~l~~~~ 84 (155)
T 3dlo_A 22 MIYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRT-----------------KDEDIIEAKETLSWAV 84 (155)
T ss_dssp CCCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTS-----------------CHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHHH
T ss_conf 56682999978999779999999999998659989999997688765-----------------4899999999999999
Q ss_pred HHHCCCCCCEEEEEEEECCHHHHHHHHHCCC--CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEE
Q ss_conf 5301489985999999169588999973037--98679984579999998876533567543110213147999731089
Q 003517 700 SIASKNQESITLEERLVESSQEIAGVLKSMN--KCNLFLVGRMAPTAPLMDTKSAEYCSELGPVGCFLASSEFSTTASVV 777 (813)
Q Consensus 700 ~~~~~~~~~v~~~e~~v~~~~~~~~~l~~~~--~~DLiivGr~~~~~GL~~w~~~e~~~eLG~igd~las~d~~~~~svL 777 (813)
......+..+.. +..+..+.....+++.++ ++||+|+|+++ ++++.++ -+|.+.+.+... +++|||
T Consensus 85 ~~~~~~g~~~~~-~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g-~~~~~~~-------~lGSv~~~vl~~---a~~PVL 152 (155)
T 3dlo_A 85 SIIRKEGAEGEE-HLLVRGKEPPDDIVDFADEVDAIAIVIGIRK-RSPTGKL-------IFGSVARDVILK---ANKPVI 152 (155)
T ss_dssp HHHHHTTCCEEE-EEEESSSCHHHHHHHHHHHTTCSEEEEECCE-ECTTSCE-------ECCHHHHHHHHH---CSSCEE
T ss_pred HHHHHCCCCCEE-EEEECCCCHHHHHHHHHHHCCCCEEEECCCC-CCCCCCE-------EECCHHHHHHHH---CCCCEE
T ss_conf 999853997259-9996279979999999987198999987899-8888777-------856189999983---999889
Q ss_pred EEE
Q ss_conf 996
Q 003517 778 VLQ 780 (813)
Q Consensus 778 vvq 780 (813)
||+
T Consensus 153 vVr 155 (155)
T 3dlo_A 153 CIK 155 (155)
T ss_dssp EEC
T ss_pred EEC
T ss_conf 959
Done!