BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003519
         (813 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2IN6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd311839
 pdb|2IO6|A Chain A, Wee1 Kinase Complexed With Inhibitor Pd330961
          Length = 287

 Score = 30.0 bits (66), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 26/39 (66%)

Query: 430 AEGRLPPRIGNIGHLTRISNKLIQLGNNNSEIHAYLQEN 468
           A  ++  +IG++GH+TRIS+  ++ G++    +  LQEN
Sbjct: 165 ASNKVMFKIGDLGHVTRISSPQVEEGDSRFLANEVLQEN 203


>pdb|2Z2W|A Chain A, Humand Wee1 Kinase Complexed With Inhibitor Pf0335770
          Length = 285

 Score = 30.0 bits (66), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 26/39 (66%)

Query: 430 AEGRLPPRIGNIGHLTRISNKLIQLGNNNSEIHAYLQEN 468
           A  ++  +IG++GH+TRIS+  ++ G++    +  LQEN
Sbjct: 163 ASNKVMFKIGDLGHVTRISSPQVEEGDSRFLANEVLQEN 201


>pdb|3BI6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd352396
 pdb|3BIZ|A Chain A, Wee1 Kinase Complex With Inhibitor Pd331618
 pdb|3CQE|A Chain A, Wee1 Kinase Complex With Inhibitor Pd074291
 pdb|3CR0|A Chain A, Wee1 Kinase Complex With Inhibitor Pd259_809
          Length = 287

 Score = 30.0 bits (66), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 26/39 (66%)

Query: 430 AEGRLPPRIGNIGHLTRISNKLIQLGNNNSEIHAYLQEN 468
           A  ++  +IG++GH+TRIS+  ++ G++    +  LQEN
Sbjct: 165 ASNKVMFKIGDLGHVTRISSPQVEEGDSRFLANEVLQEN 203


>pdb|1X8B|A Chain A, Structure Of Human Wee1a Kinase: Kinase Domain Complexed
           With Inhibitor Pd0407824
          Length = 289

 Score = 30.0 bits (66), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 26/39 (66%)

Query: 430 AEGRLPPRIGNIGHLTRISNKLIQLGNNNSEIHAYLQEN 468
           A  ++  +IG++GH+TRIS+  ++ G++    +  LQEN
Sbjct: 167 ASNKVMFKIGDLGHVTRISSPQVEEGDSRFLANEVLQEN 205


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.132    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,836,642
Number of Sequences: 62578
Number of extensions: 855906
Number of successful extensions: 1266
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1262
Number of HSP's gapped (non-prelim): 5
length of query: 813
length of database: 14,973,337
effective HSP length: 107
effective length of query: 706
effective length of database: 8,277,491
effective search space: 5843908646
effective search space used: 5843908646
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)