Query 003519
Match_columns 813
No_of_seqs 206 out of 381
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 00:58:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003519.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003519hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2073 SAP family cell cycle 100.0 3E-111 6E-116 986.9 47.7 688 1-701 1-732 (838)
2 PF04499 SAPS: SIT4 phosphatas 100.0 1.8E-73 4E-78 645.5 27.6 345 129-488 1-475 (475)
3 KOG2073 SAP family cell cycle 99.1 1.9E-08 4.1E-13 120.9 27.4 361 26-451 141-558 (838)
4 PF10508 Proteasom_PSMB: Prote 92.7 2.9 6.4E-05 49.3 16.1 216 107-378 43-265 (503)
5 PF04499 SAPS: SIT4 phosphatas 91.6 1.3 2.8E-05 52.0 11.3 130 87-224 6-150 (475)
6 PF05804 KAP: Kinesin-associat 86.6 30 0.00065 42.8 18.2 78 333-414 551-628 (708)
7 PF10508 Proteasom_PSMB: Prote 85.4 87 0.0019 37.1 23.7 284 97-449 114-420 (503)
8 KOG0946 ER-Golgi vesicle-tethe 83.8 13 0.00029 45.7 13.0 56 92-150 112-167 (970)
9 PF06025 DUF913: Domain of Unk 64.0 2E+02 0.0044 33.0 15.6 127 96-225 100-235 (379)
10 PF04826 Arm_2: Armadillo-like 55.8 3E+02 0.0066 29.9 16.7 145 186-378 48-193 (254)
11 KOG0166 Karyopherin (importin) 52.8 4.9E+02 0.011 31.4 17.2 77 333-411 380-462 (514)
12 PRK13108 prolipoprotein diacyl 47.7 83 0.0018 37.2 9.1 12 296-307 138-149 (460)
13 PF00514 Arm: Armadillo/beta-c 47.7 48 0.001 25.1 5.0 36 185-221 5-40 (41)
14 PF01603 B56: Protein phosphat 47.5 2.4E+02 0.0052 32.7 12.8 262 102-391 45-370 (409)
15 KOG1566 Conserved protein Mo25 47.3 43 0.00094 37.6 6.3 53 13-66 127-179 (342)
16 PF09759 Atx10homo_assoc: Spin 40.3 1.1E+02 0.0023 29.0 6.9 68 333-401 2-71 (102)
17 KOG3036 Protein involved in ce 38.2 81 0.0018 34.5 6.5 85 292-390 109-196 (293)
18 PF11864 DUF3384: Domain of un 34.8 8.1E+02 0.018 28.8 15.4 33 192-224 176-208 (464)
19 KOG2023 Nuclear transport rece 34.5 5E+02 0.011 32.4 12.7 140 303-480 130-289 (885)
20 PTZ00429 beta-adaptin; Provisi 33.2 1.1E+03 0.024 29.8 16.1 213 153-414 127-391 (746)
21 PF08569 Mo25: Mo25-like; Int 32.2 8E+02 0.017 27.9 13.8 127 89-223 152-284 (335)
22 KOG2085 Serine/threonine prote 31.7 4.4E+02 0.0095 31.0 11.2 45 161-209 150-194 (457)
23 PF13929 mRNA_stabil: mRNA sta 31.5 2.8E+02 0.006 31.0 9.4 55 121-176 115-179 (292)
24 PF00790 VHS: VHS domain; Int 31.0 3E+02 0.0066 26.7 8.9 57 192-249 42-98 (140)
25 KOG2759 Vacuolar H+-ATPase V1 30.3 1.2E+02 0.0025 35.5 6.5 123 120-243 286-419 (442)
26 PF12238 MSA-2c: Merozoite sur 29.1 1.2E+02 0.0026 32.1 5.9 6 763-768 180-185 (205)
27 PF04388 Hamartin: Hamartin pr 27.6 3.2E+02 0.007 33.8 10.2 136 129-310 9-157 (668)
28 PF11841 DUF3361: Domain of un 25.5 3.7E+02 0.0081 27.5 8.5 41 185-226 95-135 (160)
29 KOG1992 Nuclear export recepto 25.3 1.5E+03 0.034 29.0 17.8 232 102-402 498-765 (960)
30 COG5217 BIM1 Microtubule-bindi 25.1 1.3E+02 0.0027 33.4 5.3 116 330-454 5-139 (342)
31 PF05924 SAMP: SAMP Motif; In 24.9 37 0.0008 23.1 0.8 11 30-40 1-11 (20)
32 PF04802 SMK-1: Component of I 24.7 3.2E+02 0.007 28.6 8.2 133 84-224 35-178 (193)
33 KOG3335 Predicted coiled-coil 24.7 1.1E+02 0.0023 31.8 4.5 69 447-532 11-80 (181)
34 PF06371 Drf_GBD: Diaphanous G 21.5 5.2E+02 0.011 25.6 8.8 77 336-414 83-166 (187)
35 PLN03200 cellulose synthase-in 20.2 2.7E+03 0.058 29.9 23.8 309 41-391 392-723 (2102)
No 1
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.6e-111 Score=986.86 Aligned_cols=688 Identities=35% Similarity=0.558 Sum_probs=590.2
Q ss_pred CCccCCCCCCCChhhhhhcCCCCCHHHhhCCchHHHHHhhhchhHHHHhccHHHHHHHHHHhccCCCcchhhhhcccccc
Q 003519 1 MFWRMAGLSTASPVETILDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPF 80 (813)
Q Consensus 1 MFWkf~g~~~~S~ID~LLdked~TLEeLLDEddlLQE~K~~N~KLIdFL~k~e~lekLI~YI~~e~~ed~e~k~~~Kyp~ 80 (813)
|||+| ++.....++.+|+++.+||++||||++++||||.+|.||++||++|+++++|+.||++++++|.++|++||||+
T Consensus 1 ~f~~~-~~~~~~~~e~~l~~~~~~l~elldeed~~~e~~~~n~~l~~~l~~~e~~~~l~~~I~~e~~~d~D~k~~f~~p~ 79 (838)
T KOG2073|consen 1 MFWDF-DLESSAEIELLLEKESDTLDELLDEEDILQECKLQNSKLLNFLKRPEVLEKLVEYIIEEPEEDADKKTRFKYPN 79 (838)
T ss_pred Ccccc-ccchhHHHHHhcccchhHHHHhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHhhhhcCCCcccchhhhhcccc
Confidence 99999 68888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccchHHHHHHhhcCHHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHHhhHHHHHHHHhhCc
Q 003519 81 VACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGI 160 (813)
Q Consensus 81 iAsEILssdv~~I~d~Lvede~lL~~L~sfL~~~~~ln~llAgYFsKVv~~LL~rk~~eml~fLk~~~~~vd~LLkHI~~ 160 (813)
|+||||||++|+|.++|++|+.+|.+||+||+++.|+|+++++||+|++++|+.||+.++|.||+++.++|+.||+||++
T Consensus 80 i~~Eilt~dv~~I~~~l~~de~ll~~l~s~l~~~~pln~~l~s~F~k~~~~Ll~~k~~~~~~f~k~~~~~v~~~l~hi~~ 159 (838)
T KOG2073|consen 80 ISCEILTSDVWPISEALVEDESLLSLLYSILEHEPPLNPLLSSFFSKINSRLLDRKTEQILEFIKKKDNFVDLFLKHIDI 159 (838)
T ss_pred HHHHHHhcCcHHHHHHHhccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHHcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhccccccccchhhhHHHHhhhhHHHHHHHhcCCCCChHHHHhHHHHHHHHHhc-----CchhHHhhcCCh
Q 003519 161 TSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRS-----APPALAAKISSP 235 (813)
Q Consensus 161 ~~ImDlLlrLIt~de~~~~~~~~il~WL~eq~LIerLl~~L~~s~s~evh~NaaeiL~eIIr~-----spn~L~~~L~S~ 235 (813)
++|||||+|+++|+++.++. +++++||+++++|+||+++++|+.++++|+||+++||+|+|+ +|++|+++|+||
T Consensus 160 stlMD~Llkli~~de~~~p~-~~Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~ 238 (838)
T KOG2073|consen 160 STLMDFLLKLISTDEPESPR-TDVIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESP 238 (838)
T ss_pred cHHHHHHHHhccccCCCCch-HHHHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCH
Confidence 99999999999999999864 999999999999999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHHHHhcCCCCcccccceeeeeeeccCccccccch--h-hhhhccccCCCccccCccchHHHHHhHHHHHHhhcc
Q 003519 236 NFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGT--Y-YMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDV 312 (813)
Q Consensus 236 e~I~~Ll~~iL~~~~~~S~Lvn~lsIlI~LL~~~R~~~s~--y-~~~~~~l~~~~~~~~~Pe~l~~il~~L~~l~~LL~~ 312 (813)
++|+|||++||+++++++++|++|+|||++++++|..... | ..+..+..+. ...+.+.++++|.+||++|++||..
T Consensus 239 e~ieqLl~~ml~~~~s~s~lVs~i~vlI~ll~~~r~~~~~~~~~~i~~q~~~~~-d~~~~~~~l~~~~p~L~dF~~lL~~ 317 (838)
T KOG2073|consen 239 ETIEQLLKIMLEDGTSLSVLVSGIIVLISLLNPRRDTVETNSTTTILSQPPSER-DPIVLNELLGAMEPRLGDFVQLLLE 317 (838)
T ss_pred HHHHHHHHHHccCCcchhhHHHHHHHHHHhcCcccccccccceeeeecCCcccc-CccchHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999986543 3 3332222221 2234566789999999999999999
Q ss_pred CccccccccccCcccCCCcchhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhc-
Q 003519 313 SSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLE- 391 (813)
Q Consensus 313 ~~~~~~l~Tt~G~l~pPLG~~RLKIVELIa~LL~~~n~~i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~ile- 391 (813)
++....++||||.++||||++||||||||++||||+++.+.++++..+++.+++|+||+|+||||||++|+.||..++.
T Consensus 318 ~~~~~~l~tt~g~l~pPLG~~Rlki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y~~nN~lh~~~e~~I~~~~~~ 397 (838)
T KOG2073|consen 318 PEKLDLLETTYGELEPPLGFERLKIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEYPWNNFLHAQVESCIVENLSD 397 (838)
T ss_pred CccchhhhhhhhccCCCcchHHHHHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhcchhHHHHHHHHHHHHHhhhc
Confidence 9988899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --------CCChHHHHHHhhhcchHHHHHHHhhccccc--CCCCCCCCCCCCCCCCcchHHHHHHHH-HHHHHhcC---C
Q 003519 392 --------CKNAPLIEHLLHECNLVGKILEAEKNFTLK--DSNKPTVPAEGRLPPRIGNIGHLTRIS-NKLIQLGN---N 457 (813)
Q Consensus 392 --------~~n~~Lv~~LF~~~~Li~rIlea~k~~~~~--~~nk~t~~~~gk~~~R~GYMGHLt~IA-N~Lv~~~~---~ 457 (813)
+.+..++.|++++|+|+.+|+++++..... ..++++..++|+...|.|||||++||| |.++++.. .
T Consensus 398 ~~~~~~~~s~~~~~v~~~l~~c~l~~~~l~~~e~~e~~~~d~~~~~~~a~g~~~~~~g~~~h~~R~~pn~~vq~~~~~~~ 477 (838)
T KOG2073|consen 398 ETNNDSNISADNEIVDHLLQDCQLSDNILNQWEDSEEDEGDEDDPSDGAFGGKEYRNGPIGHLTRIAPNVGDQLKIKLED 477 (838)
T ss_pred cccccccCCCchHHHHHHHHHhhhhhhhhhcccccchhccccccchhhhhcCCcccCCccceeeecCcchhhhccccccc
Confidence 788999999999999999999998876543 234677778887557999999999999 99999643 6
Q ss_pred cHHHHHHHh--cchhHHHHHHHHhh------hhhhhhhhhhccCC-CCcccCCCCCCCCcccccCCcchHHHHHhhhhhh
Q 003519 458 NSEIHAYLQ--ENSEWNDWQINVLS------KRNTLENIYQWACG-RPTALHDRGRDSDDDDYQNRDYDVAALANNLSQA 528 (813)
Q Consensus 458 ~~~I~~~Lq--~~~~W~~fv~~~L~------k~N~ienv~~~~~G-~p~~~~d~~~dsDddd~~d~d~d~~~~~~~l~qa 528 (813)
...|+++|+ .+..|..|...++. ++|.++++|.|.|| ++...+++-+..|++++.+++|++.+.+.++.++
T Consensus 478 ~~~i~~~L~~f~~~~w~~we~~v~~di~~~~~nn~v~~~y~~~~~~~~~~~id~~~~~~e~~~~d~~~~~~~~~~~i~~~ 557 (838)
T KOG2073|consen 478 TNIISTLLEGFPEEPWNNWEHNVLFDIEQQIFNNTVDNSYNDFLGYLTSNFIDLTRFNDEEEKADRDYDVMGHLDNIADH 557 (838)
T ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhcCccchhhhhhhhhccHHHHhhhccccchhhccccccchhhhhHhhhh
Confidence 788999998 45789999888876 99999999999999 5999999999999988899999999999999998
Q ss_pred -hhhccccCCchhhhccccccCCCccccCCCccceeeec---cccccccCCCcccc-cCCcccccccccccccccCCC--
Q 003519 529 -FRYGIYSNDDVDEAQGSLERDDEDVYFDDESAEVVISS---LRLGDDQESGSLFT-NSNWFAFEDDRVSHERAAGSL-- 601 (813)
Q Consensus 529 -f~y~~~~~~d~~e~~~~~~~~~ed~~~~~~s~~~~~s~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-- 601 (813)
|+|+++.+..+.+..+...+ +..|||||+++|++++ +||||++..+++++ |++|++|+|++....+..+..
T Consensus 558 ~F~~~~de~~~~~e~~~~~~~--~~q~~~dE~~~~~l~~~~~~~lgd~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 635 (838)
T KOG2073|consen 558 NFSINIDENSPNAEDLEVEDR--LIQYFDDEKAETVLGAMGQLRLGDEDSEDSLKTWNGEELAGQDDKFDINDSEQDSYS 635 (838)
T ss_pred hccccccccCchhhhhhhhcc--ccccccccchheeecccccccccchhhhhhhhccccccccccccccCCCcccccccc
Confidence 99999999999999988888 8999999999999999 99999999999998 999999999977777644442
Q ss_pred -CCCCCCccccC-CCCCCCCCceeeccC-CCccccccCCCCCCCCCCCCCCCCCCCCcccCCCC--CCCCCcceecccCC
Q 003519 602 -ASPSPNIEETG-VTNGGGHDQVTVGED-DLDDTATSAAVPVSKSEDSDVGKLPNDSVETGSCT--TEKPPTWVEWRERP 676 (813)
Q Consensus 602 -~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 676 (813)
-.-+++.+..+ .....+++..++|+- +...+.++-.. +...... ....++ .+..+|+. +...|.|+.|.+++
T Consensus 636 ~~~D~e~~~t~n~~~~~~d~~~~~~~~~~~~~~~e~~~~~-~~~~~~~-~~~~~~-~~~~~p~~~~~~~~p~p~~~~~~~ 712 (838)
T KOG2073|consen 636 GFFDVEEWETYNADEDNDDDTSSVIGEGGESPTGEPSWGE-DSDENGS-ADSTDG-TDEFTPDHPETENSPSPSKPPGSA 712 (838)
T ss_pred cccccccccCCCCccccccchhhhhhhcCCCCCCcccccc-CCCCCcc-cccCCC-ccccCCCCCcccCCCCCCCCccch
Confidence 00011111111 112234445566664 33323233222 2222111 111111 11122222 25668999999998
Q ss_pred CCCCCCCCCCCcccCCCcccccCCC
Q 003519 677 DSSNPSSADEPVSIPNGELQDQGGN 701 (813)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (813)
....|..+ .|+|.+++.++.
T Consensus 713 ~~v~~~~~-----~~~~d~~s~~~~ 732 (838)
T KOG2073|consen 713 EGVSPKAS-----EPNGDVSSLGEQ 732 (838)
T ss_pred hccCCccc-----cccccccccccc
Confidence 87777653 348888774433
No 2
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=100.00 E-value=1.8e-73 Score=645.46 Aligned_cols=345 Identities=36% Similarity=0.571 Sum_probs=302.7
Q ss_pred HHHHHhcCchhHHHHHHHhhHHHHHHHHhhCchHHHHHHHHHhccccccccchhhhHHHHhhhhHHHHHHHhcCCCCChH
Q 003519 129 VICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPE 208 (813)
Q Consensus 129 v~~LL~rk~~eml~fLk~~~~~vd~LLkHI~~~~ImDlLlrLIt~de~~~~~~~~il~WL~eq~LIerLl~~L~~s~s~e 208 (813)
+++||.||+.+|++||+++|++|++|++||++++|||||+|||++|++. .++++++||.+++||++||++|+|+++++
T Consensus 1 n~~Ll~~k~~e~l~Fik~~~~~v~~llkHI~~~~ImDlLLklIs~d~~~--~~~~ilewL~~q~LI~~Li~~L~p~~~~~ 78 (475)
T PF04499_consen 1 NECLLDRKTEEMLEFIKSQPNFVDNLLKHIDTPAIMDLLLKLISTDKPE--SPTGILEWLAEQNLIPRLIDLLSPSYSSD 78 (475)
T ss_pred CchhhhcCHHHHHHHHHhCccHHHHHHHhcCCcHHHHHHHHHHccCccc--chHHHHHHHHHhCHHHHHHHHhCCCCCHH
Confidence 3689999999999999999999999999999999999999999999865 47899999999999999999999999999
Q ss_pred HHHhHHHHHHHHHhc------------CchhHHhhcCChHHHHHHHHHHhcCCCCcccccceeeeeeeccCccccccchh
Q 003519 209 VHANAAETLCSITRS------------APPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTY 276 (813)
Q Consensus 209 vh~NaaeiL~eIIr~------------spn~L~~~L~S~e~I~~Ll~~iL~~~~~~S~Lvn~lsIlI~LL~~~R~~~s~y 276 (813)
+|+|||++||+||++ +|++|+++|+|+++|++|+++||.... .++++||++|+|+|| |+++++|
T Consensus 79 ~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~-~s~lvn~v~IlieLI---Rknnsdy 154 (475)
T PF04499_consen 79 VQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQG-GSSLVNGVSILIELI---RKNNSDY 154 (475)
T ss_pred HHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCC-cchHHHHHHHHHHHH---Hhccccc
Confidence 999999999999985 368999999999999999999997543 799999999999999 7889999
Q ss_pred hhh-hccccCCCccccCccchHHHH----HhHHHHHHhhccCccccccccccCcccCCCcchhHHHHHHHHHHHhcCcHH
Q 003519 277 YMF-NRQLTHGSTVTVNPETVEGML----GRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEA 351 (813)
Q Consensus 277 ~~~-~~~l~~~~~~~~~Pe~l~~il----~~L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLKIVELIa~LL~~~n~~ 351 (813)
+.. .......++....|.+++.|+ +||++|+++|..++.+..+.||||.+.+|||++|||||||||+||||+|+.
T Consensus 155 ~~~~~~~~~~~~p~~rdpi~l~~lL~~~~~~l~~f~~lL~~~~~~~~l~Tt~G~l~~PLG~~RlkI~ELiAeLLhcsNm~ 234 (475)
T PF04499_consen 155 DEQLYTTIESHPPSERDPIYLGTLLKAFSPRLPDFHKLLLNPPKKPPLETTFGVLIPPLGFERLKICELIAELLHCSNMS 234 (475)
T ss_pred chhhccccccCCCCccchhhHHHHHHHHHHhHHHHHHHHhchhhccccccCCCCCCCCcchHHHHHHHHHHHHHhCCCcc
Confidence 853 111222233556777766655 799999999999988899999999999999999999999999999997654
Q ss_pred --------------------------------------------------------------------------------
Q 003519 352 -------------------------------------------------------------------------------- 351 (813)
Q Consensus 352 -------------------------------------------------------------------------------- 351 (813)
T Consensus 235 LlN~~~~~~~~~~rd~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (475)
T PF04499_consen 235 LLNEPKGEEIVYERDGERERLLEQLQDALNDLEIDDEDIDDNSMDDESDSSEDSRELEVSNDSSDSEEEDESDEDSEDEE 314 (475)
T ss_pred ccCCccccchhcCcHHHHHHHHHHHHhhhhcccCCccccccccccccccCccccccccccccccccccccCCcccccccc
Confidence
Q ss_pred -----------------------HHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHh-----cCCChHHHHHHhh
Q 003519 352 -----------------------AEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCL-----ECKNAPLIEHLLH 403 (813)
Q Consensus 352 -----------------------i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~il-----e~~n~~Lv~~LF~ 403 (813)
+.++|+++|++++||+|||+||||||||++||+||++|| .++++.|+.|||+
T Consensus 315 ~~~~~~~~~~~~~~~~~pvvGd~~k~~L~~~~il~~iLdLFfkypwNNFLH~~V~diIqqiln~~~~~~~n~~L~~~Lf~ 394 (475)
T PF04499_consen 315 EEESSDSEETEEKLRSNPVVGDYLKIELIELGILPTILDLFFKYPWNNFLHNVVEDIIQQILNGPMDESYNSFLVKHLFE 394 (475)
T ss_pred ccccccccccchhccCCCCcHHHHHHHHHHCCcHHHHHHHHhcCcchhHHHHHHHHHHHHHhCCCCcccccHHHHHHHHh
Confidence 124578899999999999999999999999999999999 4678999999999
Q ss_pred hcchHHHHHHHhhcccccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHhcCCcHH--HHHHHh---cchhHHHHHHHH
Q 003519 404 ECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRISNKLIQLGNNNSE--IHAYLQ---ENSEWNDWQINV 478 (813)
Q Consensus 404 ~~~Li~rIlea~k~~~~~~~nk~t~~~~gk~~~R~GYMGHLt~IAN~Lv~~~~~~~~--I~~~Lq---~~~~W~~fv~~~ 478 (813)
+|+|++||+++++.+..+ ..+.++|+|||||||+|||+|+++++.++. |...++ .+++|.+|++++
T Consensus 395 ~~~l~~~Il~~~~~~~~~---------~~~~~~RlGYMGHLtlIAn~ivk~~~~~~~~li~~~i~~~~~~~~W~~fv~~~ 465 (475)
T PF04499_consen 395 DCDLTDRILEGWKENDES---------QEKPGPRLGYMGHLTLIANEIVKFSEKYPEELISPDIQEELQNEEWEEFVEGV 465 (475)
T ss_pred hccHHHHHHHhhhhchhh---------cccCCCCcCchhHHHHHHHHHHHHHhcCcHHHHHHHHhhhhhhhhhHHHHHCh
Confidence 999999999999876421 223479999999999999999999876654 555555 368999999999
Q ss_pred hhhhhhhhhh
Q 003519 479 LSKRNTLENI 488 (813)
Q Consensus 479 L~k~N~ienv 488 (813)
|+++|+++++
T Consensus 466 L~et~~~~n~ 475 (475)
T PF04499_consen 466 LAETNEKENA 475 (475)
T ss_pred HHHHHhhcCC
Confidence 9999988764
No 3
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.11 E-value=1.9e-08 Score=120.94 Aligned_cols=361 Identities=16% Similarity=0.182 Sum_probs=183.4
Q ss_pred HHhhCCchHHHHHhhh--chhHHHHhcc--------------------HHHHHHHHHHhccCCCcchhhhhccccccchh
Q 003519 26 EELLDEDDIIQECKAL--NGRLINFLRE--------------------RAQVEQLIQYIVVEAPEDAEKRRTFKFPFVAC 83 (813)
Q Consensus 26 EeLLDEddlLQE~K~~--N~KLIdFL~k--------------------~e~lekLI~YI~~e~~ed~e~k~~~Kyp~iAs 83 (813)
+=++.++++++.+-.+ |..|+|||+| .+.+++|++.+--.-..+.-. +=...-|
T Consensus 141 ~f~k~~~~~v~~~l~hi~~stlMD~Llkli~~de~~~p~~~Viq~l~d~~li~kll~ll~ps~~~~~qs----na~~~L~ 216 (838)
T KOG2073|consen 141 EFIKKKDNFVDLFLKHIDISTLMDFLLKLISTDEPESPRTDVIQWLNDQELIPKLLELLNPSKDPDVQS----NAGQTLC 216 (838)
T ss_pred HHHHhhhHHHHHHHHHcCccHHHHHHHHhccccCCCCchHHHHHHHhhHHHHHHHHHHhCCccccchhH----HHHHHHH
Confidence 3345566666555332 5666666654 345555555554333222211 1122233
Q ss_pred hhhcc-----chHHHHHHhhcCHHHHHHHHh-hcCCCCCCChhhhhhHHHHHHHHHhcCchhHH--HHHHHhhH------
Q 003519 84 EIFTC-----EVDIILKTLVEDEELMNLLFS-FLEPKDSHSTLLAGYFSKVVICLLLRKTVPLM--HYIKAHQE------ 149 (813)
Q Consensus 84 EILss-----dv~~I~d~Lvede~lL~~L~s-fL~~~~~ln~llAgYFsKVv~~LL~rk~~eml--~fLk~~~~------ 149 (813)
+|.+. .-..+..+|.. ++.+.+|+. +|+...+++.+++|.+..|-.+.-.|-+.+.. .+|..|+-
T Consensus 217 ~iv~~s~~~~gPn~L~~qL~s-~e~ieqLl~~ml~~~~s~s~lVs~i~vlI~ll~~~r~~~~~~~~~~i~~q~~~~~d~~ 295 (838)
T KOG2073|consen 217 AIVRLSRNQPGPNPLTKQLES-PETIEQLLKIMLEDGTSLSVLVSGIIVLISLLNPRRDTVETNSTTTILSQPPSERDPI 295 (838)
T ss_pred HHHhcccccCCCCHHHHhhcC-HHHHHHHHHHHccCCcchhhHHHHHHHHHHhcCcccccccccceeeeecCCccccCcc
Confidence 33333 34456667665 566666664 77878889999999887776666666666553 23333322
Q ss_pred ----HHHHHHHhhCchHHHHHHHHHhccccccccchhhhHHHHhhhhHHHHHHHhcCCCCChHHHHhHHHHHHHHHhcCc
Q 003519 150 ----IMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAP 225 (813)
Q Consensus 150 ----~vd~LLkHI~~~~ImDlLlrLIt~de~~~~~~~~il~WL~eq~LIerLl~~L~~s~s~evh~NaaeiL~eIIr~sp 225 (813)
+|..|..| +-||+--|...... ++++.-...|-|.-...+ .-+++++.++...+.
T Consensus 296 ~~~~~l~~~~p~-----L~dF~~lL~~~~~~---------------~~l~tt~g~l~pPLG~~R-lki~eliaelL~~~~ 354 (838)
T KOG2073|consen 296 VLNELLGAMEPR-----LGDFVQLLLEPEKL---------------DLLETTYGELEPPLGFER-LKIVELIAELLHCSN 354 (838)
T ss_pred chHHHHHHHHHH-----HHHHHHHhcCCccc---------------hhhhhhhhccCCCcchHH-HHHHHHHHHHhccCc
Confidence 33333333 33443333222221 123333334434333333 457888888888887
Q ss_pred hhHHhhcCChHHHHHHHHHHhcCCCC--cccccc-eeeeeeeccCccccccchhhhhhccccCCCccccCccchHHHHHh
Q 003519 226 PALAAKISSPNFIGRLFRHALENSRP--KSVLVN-SLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGR 302 (813)
Q Consensus 226 n~L~~~L~S~e~I~~Ll~~iL~~~~~--~S~Lvn-~lsIlI~LL~~~R~~~s~y~~~~~~l~~~~~~~~~Pe~l~~il~~ 302 (813)
-.+.+.+....+++++++..++..-. ....+. +|..+.+.. . .+.+ ....+-+.+.+++..
T Consensus 355 ~~l~~el~~~~~~~r~lD~f~~y~~nN~lh~~~e~~I~~~~~~~-~--~~~~-------------~~s~~~~~v~~~l~~ 418 (838)
T KOG2073|consen 355 MTLLNELRAEGIAERLLDLFFEYPWNNFLHAQVESCIVENLSDE-T--NNDS-------------NISADNEIVDHLLQD 418 (838)
T ss_pred HHHHhHHhhhhhHHHHHHHHHhcchhHHHHHHHHHHHHHhhhcc-c--cccc-------------cCCCchHHHHHHHHH
Confidence 77888888888888888876654321 001000 111111100 0 0000 001111223333321
Q ss_pred HHHHHHhhcc---Cccc--cccccccCcccCC-CcchhHHHHHHHHHHHhcCcHHHH---HHHHHhhhHHHHHHHHhhcC
Q 003519 303 LGDLLKLLDV---SSEE--SSLLTTYGKLQPP-LGKHRLKIVEFISVLLTVGSEAAE---KELIRHGAVRRILDLFFEYP 373 (813)
Q Consensus 303 L~~l~~LL~~---~~~~--~~l~Tt~G~l~pP-LG~~RLKIVELIa~LL~~~n~~i~---~~Li~~~ii~~LLdLFFkYp 373 (813)
..-.-.+|.. .... ..-.-++|...+| + ...-+..+++.....+. .++-..++++++|++|..++
T Consensus 419 c~l~~~~l~~~e~~e~~~~d~~~~~~~a~g~~~~------~~g~~~h~~R~~pn~~vq~~~~~~~~~~i~~~L~~f~~~~ 492 (838)
T KOG2073|consen 419 CQLSDNILNQWEDSEEDEGDEDDPSDGAFGGKEY------RNGPIGHLTRIAPNVGDQLKIKLEDTNIISTLLEGFPEEP 492 (838)
T ss_pred hhhhhhhhhcccccchhccccccchhhhhcCCcc------cCCccceeeecCcchhhhccccccchHHHHHHHHHHhhhh
Confidence 1111112221 0000 0000111111111 0 01111122233311111 23446789999999999999
Q ss_pred CCchhHHHHHHHHHHHhcC-----CChHHHHHHhhhcchHHHHHHHhhcccccCCCCCCCCCCCCCCCCcchHHHHHHHH
Q 003519 374 YNNFLHHHVENIILSCLEC-----KNAPLIEHLLHECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRIS 448 (813)
Q Consensus 374 wNNfLH~~Ve~II~~ile~-----~n~~Lv~~LF~~~~Li~rIlea~k~~~~~~~nk~t~~~~gk~~~R~GYMGHLt~IA 448 (813)
||||+|+++++|+++++++ ++..+.+ ++..+++.++-+... .+...|.|||||+++||
T Consensus 493 w~~we~~v~~di~~~~~nn~v~~~y~~~~~~-------~~~~~id~~~~~~e~----------~~~d~~~~~~~~~~~i~ 555 (838)
T KOG2073|consen 493 WNNWEHNVLFDIEQQIFNNTVDNSYNDFLGY-------LTSNFIDLTRFNDEE----------EKADRDYDVMGHLDNIA 555 (838)
T ss_pred hhhhHHHHHHHHHHHhhcCccchhhhhhhhh-------ccHHHHhhhccccch----------hhccccccchhhhhHhh
Confidence 9999999999999999975 4444444 455666666644321 12357999999999999
Q ss_pred HHH
Q 003519 449 NKL 451 (813)
Q Consensus 449 N~L 451 (813)
+.+
T Consensus 556 ~~~ 558 (838)
T KOG2073|consen 556 DHN 558 (838)
T ss_pred hhh
Confidence 976
No 4
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=92.69 E-value=2.9 Score=49.27 Aligned_cols=216 Identities=18% Similarity=0.256 Sum_probs=130.3
Q ss_pred HHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHHhhHHHHHHHHhhCchHHHHHHHHHhcc-ccccccchhhhH
Q 003519 107 LFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGA-DEHMYTNFTESM 185 (813)
Q Consensus 107 L~sfL~~~~~ln~llAgYFsKVv~~LL~rk~~eml~fLk~~~~~vd~LLkHI~~~~ImDlLlrLIt~-de~~~~~~~~il 185 (813)
||+.|... +.=...+-++|+..++....-.-+ +.....++...|.| ..+.|-.+.++.|.. .+. ..+..
T Consensus 43 lf~~L~~~---~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~----~~~~~ 112 (503)
T PF10508_consen 43 LFDCLNTS---NREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTH-PSPKVRRLALKQLGRIARH----SEGAA 112 (503)
T ss_pred HHHHHhhc---ChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcC----CHHHH
Confidence 66666644 333445667888888886544333 67777888888888 557888886665433 222 24568
Q ss_pred HHHhhhhHHHHHHHhcCCCCChHHHHhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcccccceeeeeeec
Q 003519 186 QWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISL 265 (813)
Q Consensus 186 ~WL~eq~LIerLl~~L~~s~s~evh~NaaeiL~eIIr~spn~L~~~L~S~e~I~~Ll~~iL~~~~~~S~Lvn~lsIlI~L 265 (813)
+++.+.+++..++.+|. ..+..+...|+.+|+.|.+..+ -.+.|-.+..+..|-+.+-+.. ..+-...+.++..+
T Consensus 113 ~~~~~~~l~~~i~~~L~-~~d~~Va~~A~~~L~~l~~~~~--~~~~l~~~~~~~~L~~l~~~~~--~~vR~Rv~el~v~i 187 (503)
T PF10508_consen 113 QLLVDNELLPLIIQCLR-DPDLSVAKAAIKALKKLASHPE--GLEQLFDSNLLSKLKSLMSQSS--DIVRCRVYELLVEI 187 (503)
T ss_pred HHhcCccHHHHHHHHHc-CCcHHHHHHHHHHHHHHhCCch--hHHHHhCcchHHHHHHHHhccC--HHHHHHHHHHHHHH
Confidence 89999999999999884 4556777888999999886532 2233444444445544343311 11111111111111
Q ss_pred cCccccccchhhhhhccccCCCccccCccchHHHHH--hHHHHHHhhccCccccccccccCcccCCCcchhHHHHHHHHH
Q 003519 266 LDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLG--RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISV 343 (813)
Q Consensus 266 L~~~R~~~s~y~~~~~~l~~~~~~~~~Pe~l~~il~--~L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLKIVELIa~ 343 (813)
....++....+.. -+..+++.|.... . ..|+.++|++..
T Consensus 188 -----------------------~~~S~~~~~~~~~sgll~~ll~eL~~dD---i-------------Lvqlnalell~~ 228 (503)
T PF10508_consen 188 -----------------------ASHSPEAAEAVVNSGLLDLLLKELDSDD---I-------------LVQLNALELLSE 228 (503)
T ss_pred -----------------------HhcCHHHHHHHHhccHHHHHHHHhcCcc---H-------------HHHHHHHHHHHH
Confidence 1123333433332 3444555454311 0 268889999999
Q ss_pred HHhcCcHHHHHHHHHhhhHHHHHHHHhhc---C-CCchh
Q 003519 344 LLTVGSEAAEKELIRHGAVRRILDLFFEY---P-YNNFL 378 (813)
Q Consensus 344 LL~~~n~~i~~~Li~~~ii~~LLdLFFkY---p-wNNfL 378 (813)
|-.+ +. -.+.|.+.|+++.|.+++..- | ++.++
T Consensus 229 La~~-~~-g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~ 265 (503)
T PF10508_consen 229 LAET-PH-GLQYLEQQGIFDKLSNLLQDSEEDPRLSSLL 265 (503)
T ss_pred HHcC-hh-HHHHHHhCCHHHHHHHHHhccccCCcccchh
Confidence 9983 33 357889999999999998777 4 55544
No 5
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=91.62 E-value=1.3 Score=51.99 Aligned_cols=130 Identities=12% Similarity=0.250 Sum_probs=96.7
Q ss_pred ccchHHHHHHhhcCHHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhc--CchhHHHHHHHhhHHHHHHHHhhC-----
Q 003519 87 TCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLR--KTVPLMHYIKAHQEIMARLVDLIG----- 159 (813)
Q Consensus 87 ssdv~~I~d~Lvede~lL~~L~sfL~~~~~ln~llAgYFsKVv~~LL~r--k~~eml~fLk~~~~~vd~LLkHI~----- 159 (813)
.-....+++.|-..+.++++|+.-++. |.++-+|.|++. +.+ .+..++++|.. ++++.+|+..+.
T Consensus 6 ~~k~~e~l~Fik~~~~~v~~llkHI~~-----~~ImDlLLklIs--~d~~~~~~~ilewL~~-q~LI~~Li~~L~p~~~~ 77 (475)
T PF04499_consen 6 DRKTEEMLEFIKSQPNFVDNLLKHIDT-----PAIMDLLLKLIS--TDKPESPTGILEWLAE-QNLIPRLIDLLSPSYSS 77 (475)
T ss_pred hcCHHHHHHHHHhCccHHHHHHHhcCC-----cHHHHHHHHHHc--cCcccchHHHHHHHHH-hCHHHHHHHHhCCCCCH
Confidence 344556777777888889998888854 458888899888 444 46688999987 589999999985
Q ss_pred --chHHHHHHHHHhcccccc------ccchhhhHHHHhhhhHHHHHHHhcCCCCChHHHHhHHHHHHHHHhcC
Q 003519 160 --ITSIMEVLIRLIGADEHM------YTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSA 224 (813)
Q Consensus 160 --~~~ImDlLlrLIt~de~~------~~~~~~il~WL~eq~LIerLl~~L~~s~s~evh~NaaeiL~eIIr~s 224 (813)
..++.|+|.-||+..... ...+.....-|.++..|.+|++.+-.........|+..++.++||..
T Consensus 78 ~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 78 DVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 357899999998764311 11124567778899999999998765333556678999999999853
No 6
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=86.58 E-value=30 Score=42.82 Aligned_cols=78 Identities=14% Similarity=0.219 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhcCCChHHHHHHhhhcchHHHHH
Q 003519 333 HRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKIL 412 (813)
Q Consensus 333 ~RLKIVELIa~LL~~~n~~i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~ile~~n~~Lv~~LF~~~~Li~rIl 412 (813)
.-|.+|-++..+.. ++.....|.+.|++..+++||-.+.=..=+=.|+.-++.+.+- ...-..++.++.+++..++
T Consensus 551 l~LE~Vi~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~--h~~tr~~ll~~~~~~~yli 626 (708)
T PF05804_consen 551 LLLEVVILLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLF--HEETREVLLKETEIPAYLI 626 (708)
T ss_pred HHHHHHHHHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHc--ChHHHHHHHhccchHHHHH
Confidence 44556655554442 4556677889999999999999887766555554444444442 2333445556666666666
Q ss_pred HH
Q 003519 413 EA 414 (813)
Q Consensus 413 ea 414 (813)
+-
T Consensus 627 dL 628 (708)
T PF05804_consen 627 DL 628 (708)
T ss_pred HH
Confidence 54
No 7
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=85.38 E-value=87 Score=37.13 Aligned_cols=284 Identities=18% Similarity=0.214 Sum_probs=156.6
Q ss_pred hhcCHHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHHhhHHHHHHHHhhCc------hHHHHHHHHH
Q 003519 97 LVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGI------TSIMEVLIRL 170 (813)
Q Consensus 97 Lvede~lL~~L~sfL~~~~~ln~llAgYFsKVv~~LL~rk~~eml~fLk~~~~~vd~LLkHI~~------~~ImDlLlrL 170 (813)
++.+.+++..+..-|..+. .-.|..-+|++..|...+. -++-|. .++++..|.+.+.. ..+.+++..+
T Consensus 114 ~~~~~~l~~~i~~~L~~~d---~~Va~~A~~~L~~l~~~~~--~~~~l~-~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i 187 (503)
T PF10508_consen 114 LLVDNELLPLIIQCLRDPD---LSVAKAAIKALKKLASHPE--GLEQLF-DSNLLSKLKSLMSQSSDIVRCRVYELLVEI 187 (503)
T ss_pred HhcCccHHHHHHHHHcCCc---HHHHHHHHHHHHHHhCCch--hHHHHh-CcchHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 3445566777777675433 3466677788888876543 223232 11223332222222 3466666666
Q ss_pred hccccccccchhhhHHHHhhhhHHHHHHHhcCCCCChHHHHhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCC
Q 003519 171 IGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSR 250 (813)
Q Consensus 171 It~de~~~~~~~~il~WL~eq~LIerLl~~L~~s~s~evh~NaaeiL~eIIr~spn~L~~~L~S~e~I~~Ll~~iL~~~~ 250 (813)
-... ...++...+.++++.+++.|.. .|.-++.||.++|.++.. . +.-..+|.....+.+|.+.+.....
T Consensus 188 ~~~S-------~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~-~-~~g~~yL~~~gi~~~L~~~l~~~~~ 257 (503)
T PF10508_consen 188 ASHS-------PEAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAE-T-PHGLQYLEQQGIFDKLSNLLQDSEE 257 (503)
T ss_pred HhcC-------HHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHc-C-hhHHHHHHhCCHHHHHHHHHhcccc
Confidence 4332 2356677778999999999988 778889999999999998 3 3457788888889999887765432
Q ss_pred CcccccceeeeeeeccCccccccchhhhhhccccCCCccccCccchHHHHHhHHHHHHhhcc---CccccccccccCccc
Q 003519 251 PKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDV---SSEESSLLTTYGKLQ 327 (813)
Q Consensus 251 ~~S~Lvn~lsIlI~LL~~~R~~~s~y~~~~~~l~~~~~~~~~Pe~l~~il~~L~~l~~LL~~---~~~~~~l~Tt~G~l~ 327 (813)
.. ..+++- +...+ ..+. .+ ....|..+ +...+.|+..|.. ..+.
T Consensus 258 dp--~~~~~~-l~g~~----------~f~g-~l-----a~~~~~~v---~~~~p~~~~~l~~~~~s~d~----------- 304 (503)
T PF10508_consen 258 DP--RLSSLL-LPGRM----------KFFG-NL-----ARVSPQEV---LELYPAFLERLFSMLESQDP----------- 304 (503)
T ss_pred CC--cccchh-hhhHH----------HHHH-HH-----HhcChHHH---HHHHHHHHHHHHHHhCCCCh-----------
Confidence 11 001100 00111 1110 00 01122212 2233344332221 1100
Q ss_pred CCCcchhHHHHHHHHHHHhcCcHHHHHHH-HH-hhhHHHHHHHHhhcCCCch--hHHHHHHHHHHHhcCCCh-------H
Q 003519 328 PPLGKHRLKIVEFISVLLTVGSEAAEKEL-IR-HGAVRRILDLFFEYPYNNF--LHHHVENIILSCLECKNA-------P 396 (813)
Q Consensus 328 pPLG~~RLKIVELIa~LL~~~n~~i~~~L-i~-~~ii~~LLdLFFkYpwNNf--LH~~Ve~II~~ile~~n~-------~ 396 (813)
..|.-.++-++.+= +..+.. ..| .. .+.++.++..++.+-.+-- ++....+++..++..... .
T Consensus 305 ----~~~~~A~dtlg~ig-st~~G~-~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~ 378 (503)
T PF10508_consen 305 ----TIREVAFDTLGQIG-STVEGK-QLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILS 378 (503)
T ss_pred ----hHHHHHHHHHHHHh-CCHHHH-HHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 13344556666553 333332 233 33 4688999999999999875 788888889999865433 3
Q ss_pred HHHHHhh---hcchHHHHHHHhhcccccCCCCCCCCCCCCCCCCcchHHHHHHHHH
Q 003519 397 LIEHLLH---ECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRISN 449 (813)
Q Consensus 397 Lv~~LF~---~~~Li~rIlea~k~~~~~~~nk~t~~~~gk~~~R~GYMGHLt~IAN 449 (813)
+....|. .......|+..-+ ++++. .|.+.++.|+-|+.
T Consensus 379 ~~~~w~~~~~~~~~~~~l~~~~~-----------qPF~e---lr~a~~~~l~~l~~ 420 (503)
T PF10508_consen 379 ITESWYESLSGSPLSNLLMSLLK-----------QPFPE---LRCAAYRLLQALAA 420 (503)
T ss_pred HHHHHHHHhcCCchHHHHHHHhc-----------CCchH---HHHHHHHHHHHHhc
Confidence 3444444 2222224444332 12322 67777777777764
No 8
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.78 E-value=13 Score=45.72 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=43.2
Q ss_pred HHHHHhhcCHHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHHhhHH
Q 003519 92 IILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEI 150 (813)
Q Consensus 92 ~I~d~Lvede~lL~~L~sfL~~~~~ln~llAgYFsKVv~~LL~rk~~eml~fLk~~~~~ 150 (813)
.|.+.++.+++++..|.++|+..+.+-- =|=.+.+.+||..||-++=.-|..+|-=
T Consensus 112 ~iae~fik~qd~I~lll~~~e~~DF~VR---~~aIqLlsalls~r~~e~q~~ll~~P~g 167 (970)
T KOG0946|consen 112 WIAEQFIKNQDNITLLLQSLEEFDFHVR---LYAIQLLSALLSCRPTELQDALLVSPMG 167 (970)
T ss_pred HHHHHHHcCchhHHHHHHHHHhhchhhh---hHHHHHHHHHHhcCCHHHHHHHHHCchh
Confidence 3889999999999999999987763322 2346888999999988877777776653
No 9
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=64.04 E-value=2e+02 Score=33.04 Aligned_cols=127 Identities=17% Similarity=0.266 Sum_probs=85.7
Q ss_pred HhhcCHHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHHhhHHHHHHHHhhC---chHHHHHHHHHhc
Q 003519 96 TLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIG---ITSIMEVLIRLIG 172 (813)
Q Consensus 96 ~Lvede~lL~~L~sfL~~~~~ln~llAgYFsKVv~~LL~rk~~eml~fLk~~~~~vd~LLkHI~---~~~ImDlLlrLIt 172 (813)
.|+++..++.-|-..|.+..-..+.+.++-.-|+..++..-|.. +..|... .+++.||+.|. +.+-.|+|..|-.
T Consensus 100 nl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~-~~~l~e~-Gl~~~~L~~i~~~~i~~s~e~l~~lP~ 177 (379)
T PF06025_consen 100 NLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTS-FSILQEA-GLIDAFLDAITAKGILPSSEVLTSLPN 177 (379)
T ss_pred cccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCch-hHHHHHc-CChHHHHHHHhccCCCCcHHHHHHHHH
Confidence 34444667777777777766667777777778888888877753 3444432 46666777665 6666787777766
Q ss_pred cccccccchhhhHHHHhhhhHHHHHHHhcCC-CC-----ChHHHHhHHHHHHHHHhcCc
Q 003519 173 ADEHMYTNFTESMQWIEDTNVLEMIVDKFSS-SD-----SPEVHANAAETLCSITRSAP 225 (813)
Q Consensus 173 ~de~~~~~~~~il~WL~eq~LIerLl~~L~~-s~-----s~evh~NaaeiL~eIIr~sp 225 (813)
.-....-|.. -++-+.+.+.+.++++.|-. .| ..+.-.+++.-+.+++|..|
T Consensus 178 ~l~AicLN~~-Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p 235 (379)
T PF06025_consen 178 VLSAICLNNR-GLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHP 235 (379)
T ss_pred HHhHHhcCHH-HHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCH
Confidence 5443333333 35666778999999998854 22 22677788999999999876
No 10
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=55.76 E-value=3e+02 Score=29.89 Aligned_cols=145 Identities=19% Similarity=0.272 Sum_probs=81.0
Q ss_pred HHHhhhhHHHHHHHhcCCCCChHHHHhHHHHHHHHHhcCch-hHHhhcCChHHHHHHHHHHhcCCCCcccccceeeeeee
Q 003519 186 QWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPP-ALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICIS 264 (813)
Q Consensus 186 ~WL~eq~LIerLl~~L~~s~s~evh~NaaeiL~eIIr~spn-~L~~~L~S~e~I~~Ll~~iL~~~~~~S~Lvn~lsIlI~ 264 (813)
+...+-+.+..+.+.|+.. ++.++..| |+++...+.+ +-..++ +.+|.++++.++...-...+-..|+..+..
T Consensus 48 ~~Ir~~Ggi~lI~~lL~~p-~~~vr~~A---L~aL~Nls~~~en~~~I--k~~i~~Vc~~~~s~~lns~~Q~agLrlL~n 121 (254)
T PF04826_consen 48 DIIRDLGGISLIGSLLNDP-NPSVREKA---LNALNNLSVNDENQEQI--KMYIPQVCEETVSSPLNSEVQLAGLRLLTN 121 (254)
T ss_pred HHHHHcCCHHHHHHHcCCC-ChHHHHHH---HHHHHhcCCChhhHHHH--HHHHHHHHHHHhcCCCCCHHHHHHHHHHHc
Confidence 3445556677777666554 45555444 5555544432 111122 345666666555432111222344444443
Q ss_pred ccCccccccchhhhhhccccCCCccccCccchHHHHHhHHHHHHhhccCccccccccccCcccCCCcchhHHHHHHHHHH
Q 003519 265 LLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVL 344 (813)
Q Consensus 265 LL~~~R~~~s~y~~~~~~l~~~~~~~~~Pe~l~~il~~L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLKIVELIa~L 344 (813)
|- +...+-.-+..++++|+.+|.... |..|.++++++.-|
T Consensus 122 Lt------------------------v~~~~~~~l~~~i~~ll~LL~~G~----------------~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 122 LT------------------------VTNDYHHMLANYIPDLLSLLSSGS----------------EKTKVQVLKVLVNL 161 (254)
T ss_pred cC------------------------CCcchhhhHHhhHHHHHHHHHcCC----------------hHHHHHHHHHHHHh
Confidence 31 111112224457888888886422 23677888765554
Q ss_pred HhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchh
Q 003519 345 LTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFL 378 (813)
Q Consensus 345 L~~~n~~i~~~Li~~~ii~~LLdLFFkYpwNNfL 378 (813)
=. ++..-.+|+..+++..++.||-+-.-+..|
T Consensus 162 S~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l 193 (254)
T PF04826_consen 162 SE--NPDMTRELLSAQVLSSFLSLFNSSESKENL 193 (254)
T ss_pred cc--CHHHHHHHHhccchhHHHHHHccCCccHHH
Confidence 33 566678999999999999999887666555
No 11
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.84 E-value=4.9e+02 Score=31.40 Aligned_cols=77 Identities=22% Similarity=0.229 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhcC----CCh--HHHHHHhhhcc
Q 003519 333 HRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLEC----KNA--PLIEHLLHECN 406 (813)
Q Consensus 333 ~RLKIVELIa~LL~~~n~~i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~ile~----~n~--~Lv~~LF~~~~ 406 (813)
.|-..+--|.-+...+++.-...|++.|+++-+-+|+ ..+= .-+-.++.+.+.-|+.- ++. ..+..++++|.
T Consensus 380 ~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL-~~~D-~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~g 457 (514)
T KOG0166|consen 380 IRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLL-TCPD-VKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAG 457 (514)
T ss_pred HHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcc-cCCC-hHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHcc
Confidence 6667888888999988888888999999999999998 4333 33366666666666631 110 34444555555
Q ss_pred hHHHH
Q 003519 407 LVGKI 411 (813)
Q Consensus 407 Li~rI 411 (813)
-+++|
T Consensus 458 gldki 462 (514)
T KOG0166|consen 458 GLDKI 462 (514)
T ss_pred ChhHH
Confidence 55543
No 12
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=47.74 E-value=83 Score=37.17 Aligned_cols=12 Identities=33% Similarity=0.805 Sum_probs=8.1
Q ss_pred hHHHHHhHHHHH
Q 003519 296 VEGMLGRLGDLL 307 (813)
Q Consensus 296 l~~il~~L~~l~ 307 (813)
+...+-|++.|+
T Consensus 138 lGqaiGRiGnF~ 149 (460)
T PRK13108 138 LAQAIGRLGNYF 149 (460)
T ss_pred HHHHHHHHHHHh
Confidence 455667888766
No 13
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=47.66 E-value=48 Score=25.15 Aligned_cols=36 Identities=28% Similarity=0.310 Sum_probs=30.8
Q ss_pred HHHHhhhhHHHHHHHhcCCCCChHHHHhHHHHHHHHH
Q 003519 185 MQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSIT 221 (813)
Q Consensus 185 l~WL~eq~LIerLl~~L~~s~s~evh~NaaeiL~eII 221 (813)
.+.+-+.+.|+.|+++|. +.+.+++.+|+-.|..|.
T Consensus 5 ~~~i~~~g~i~~Lv~ll~-~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 5 KQAIVEAGGIPPLVQLLK-SPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHTTHHHHHHHHTT-SSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHc-CCCHHHHHHHHHHHHHHh
Confidence 345678899999999998 788999999999998875
No 14
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=47.53 E-value=2.4e+02 Score=32.66 Aligned_cols=262 Identities=13% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCC---CCChhhhhhHHHHHHHHHhcCchhHHHHHHHhhH---HHHHHHHhhCchHHHHHHHHHhcccc
Q 003519 102 ELMNLLFSFLEPKD---SHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQE---IMARLVDLIGITSIMEVLIRLIGADE 175 (813)
Q Consensus 102 ~lL~~L~sfL~~~~---~ln~llAgYFsKVv~~LL~rk~~eml~fLk~~~~---~vd~LLkHI~~~~ImDlLlrLIt~de 175 (813)
..|..|..++.... .+.+-.-.-+.+.+..=+-|.--.+-..--...+ +.+--..| ..-|.++|+|+|..-.
T Consensus 45 ~~L~el~~~v~~~~~~~~l~e~~~~~i~~Mi~~NifR~lP~~~~~~~~~~~d~~~~e~~WpH--L~~vY~il~~~i~~~~ 122 (409)
T PF01603_consen 45 QTLNELVDYVSNSRIQGILTEPVYPEIFNMISANIFRPLPPIPNPSFDPDDDEPFLEPSWPH--LQLVYEILLRFIESPP 122 (409)
T ss_dssp HHHHHHHHHHCSSS--SSS-TTSHHHHHHHHHHHH-S-----SS--S-GGG------TTHHH--HHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhccCCCCCcccccCCccccccccccccHh--HHHHHHHHHHHHHCcc
Q ss_pred ccccchhhhHHHHhhhhHHHHHHHhcCCCCChHHHHhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCC----
Q 003519 176 HMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRP---- 251 (813)
Q Consensus 176 ~~~~~~~~il~WL~eq~LIerLl~~L~~s~s~evh~NaaeiL~eIIr~spn~L~~~L~S~e~I~~Ll~~iL~~~~~---- 251 (813)
... ..=.-.++++.+|+..|++....|+.. +..+|..|+..-++ .|......+...|++.+.+...+
T Consensus 123 ~~~------~~~~i~~~fi~~Ll~l~~S~D~rER~~-lk~~l~~iy~k~~~--~r~~Ir~~i~~~~~~fi~e~~~~~gI~ 193 (409)
T PF01603_consen 123 FDP------AKKYIDQKFIKKLLELFDSPDPRERDY-LKTILHRIYGKFPN--LRSFIRKSINNIFYRFIYETERHNGIA 193 (409)
T ss_dssp --C------CTTTS-HHHHHHHHHTTTSSTHHHHHH-HHHHHHHHHHH-TT--THHHHHHHHHHHHHHHHHTTS--STHH
T ss_pred ccH------HHHHcCHHHHHHHHHHcCCCCHHHHHH-HHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhcCcccccCHH
Q ss_pred -----cccccceee-------------eeeeccCccccccchhhhhhccccC------CCccccCccchHHHHHh-----
Q 003519 252 -----KSVLVNSLS-------------ICISLLDPKRLTLGTYYMFNRQLTH------GSTVTVNPETVEGMLGR----- 302 (813)
Q Consensus 252 -----~S~Lvn~ls-------------IlI~LL~~~R~~~s~y~~~~~~l~~------~~~~~~~Pe~l~~il~~----- 302 (813)
...+++|.. |++-|..++ .+..|-.++.. ....+....++.+|+.+
T Consensus 194 elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~-----~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~ 268 (409)
T PF01603_consen 194 ELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSP-----HLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTN 268 (409)
T ss_dssp HHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGST-----GGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-
T ss_pred HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCC
Q ss_pred -------HHHHHHhhccCccccccccccCcccCCCcchhHHHHHHHHHHHhcCcHHHHHHHH---------------Hhh
Q 003519 303 -------LGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELI---------------RHG 360 (813)
Q Consensus 303 -------L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLKIVELIa~LL~~~n~~i~~~Li---------------~~~ 360 (813)
|..+-.+|..-+ ..-|......+...++.++.+.+..+..+=+ ...
T Consensus 269 s~Kev~FL~el~~il~~~~------------~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~ 336 (409)
T PF01603_consen 269 SQKEVLFLNELEEILEVLP------------PEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRV 336 (409)
T ss_dssp HHHHHHHHHHHHHHHTT--------------HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHH
T ss_pred chhHHHHHHHHHHHHHhcC------------HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHH
Q ss_pred hHHHHHHHHhh---cCCCchhHHHHHHHHHHHhc
Q 003519 361 AVRRILDLFFE---YPYNNFLHHHVENIILSCLE 391 (813)
Q Consensus 361 ii~~LLdLFFk---YpwNNfLH~~Ve~II~~ile 391 (813)
+++.++.-..+ --||.-.|..+.+++..+.+
T Consensus 337 i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 337 ILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
No 15
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=47.29 E-value=43 Score=37.56 Aligned_cols=53 Identities=17% Similarity=0.306 Sum_probs=42.6
Q ss_pred hhhhhhcCCCCCHHHhhCCchHHHHHhhhchhHHHHhccHHHHHHHHHHhccCC
Q 003519 13 PVETILDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQYIVVEA 66 (813)
Q Consensus 13 ~ID~LLdked~TLEeLLDEddlLQE~K~~N~KLIdFL~k~e~lekLI~YI~~e~ 66 (813)
-++.|++...-+.+-.|.--.++-||+. -.-|-.++....++++...|+-...
T Consensus 127 ~~~~lv~~~~~~~~iaL~cg~mlrEcir-he~LakiiL~s~~~~~FF~~vq~p~ 179 (342)
T KOG1566|consen 127 ILDNLVKGYENTPEIALTCGNMLRECIR-HEFLAKIILESTNFEKFFLYVQLPN 179 (342)
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHh-hHHHHHHHHcchhHHHHHHHHhccc
Confidence 4667777522278888999999999998 6778888888899999999997653
No 16
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=40.32 E-value=1.1e+02 Score=29.04 Aligned_cols=68 Identities=19% Similarity=0.175 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhcCC--ChHHHHHH
Q 003519 333 HRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECK--NAPLIEHL 401 (813)
Q Consensus 333 ~RLKIVELIa~LL~~~n~~i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~ile~~--n~~Lv~~L 401 (813)
.|.-+|++|+.|.+- +..+...+.+.|-++.+|+..--=++|=|+-....=+|...+++. |..++..|
T Consensus 2 ~K~~lvrlianl~~~-~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYK-NKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhC-CHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 366799999999986 466778888999999999998878888888888888888888753 44444444
No 17
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=38.24 E-value=81 Score=34.52 Aligned_cols=85 Identities=19% Similarity=0.221 Sum_probs=59.1
Q ss_pred CccchHHHHH-hHHHHH-HhhccCccccccccccCcccCCCcchhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHH
Q 003519 292 NPETVEGMLG-RLGDLL-KLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLF 369 (813)
Q Consensus 292 ~Pe~l~~il~-~L~~l~-~LL~~~~~~~~l~Tt~G~l~pPLG~~RLKIVELIa~LL~~~n~~i~~~Li~~~ii~~LLdLF 369 (813)
.|++...++. |++-++ .+|.. +....||-..||.-+-.|++|++.+...+..-|..+++++.||..+
T Consensus 109 HpdTr~~FL~A~iPlylYpfL~T-----------t~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrim 177 (293)
T KOG3036|consen 109 HPDTRRAFLRAHIPLYLYPFLNT-----------TSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIM 177 (293)
T ss_pred CcchHHHHHHccChhhhHHhhhc-----------cccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHH
Confidence 4666666554 555433 33432 2236799999999999999999999999999999999999999876
Q ss_pred hhcCCCchh-HHHHHHHHHHHh
Q 003519 370 FEYPYNNFL-HHHVENIILSCL 390 (813)
Q Consensus 370 FkYpwNNfL-H~~Ve~II~~il 390 (813)
-. -.-| ..+...|++.|+
T Consensus 178 e~---GSelSKtvA~fIlqKIl 196 (293)
T KOG3036|consen 178 ES---GSELSKTVATFILQKIL 196 (293)
T ss_pred hc---ccHHHHHHHHHHHHHHh
Confidence 32 3334 233344555555
No 18
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=34.75 E-value=8.1e+02 Score=28.75 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=22.5
Q ss_pred hHHHHHHHhcCCCCChHHHHhHHHHHHHHHhcC
Q 003519 192 NVLEMIVDKFSSSDSPEVHANAAETLCSITRSA 224 (813)
Q Consensus 192 ~LIerLl~~L~~s~s~evh~NaaeiL~eIIr~s 224 (813)
.+|..++..-.....++...++-.+|-+||++|
T Consensus 176 ~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~ 208 (464)
T PF11864_consen 176 SLVDQICTICKSTSSEDDIEACLSVLDAIITYG 208 (464)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcC
Confidence 345555555455555666678888999999876
No 19
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.49 E-value=5e+02 Score=32.37 Aligned_cols=140 Identities=20% Similarity=0.279 Sum_probs=71.3
Q ss_pred HHHHHHhhccCccccccccccCcccCCCcchhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHH
Q 003519 303 LGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHV 382 (813)
Q Consensus 303 L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLKIVELIa~LL~~~n~~i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~V 382 (813)
|+.|..+|..+. .+..+-.+|.++ ||||=.++.+.+.-. .+-+ .-.+++++. ||++| +--+..+.
T Consensus 130 Lp~L~~~L~s~d-~n~~EgA~~AL~--------KIcEDsa~~lds~~~---~rpl-~~mipkfl~-f~~h~-spkiRs~A 194 (885)
T KOG2023|consen 130 LPQLCELLDSPD-YNTCEGAFGALQ--------KICEDSAQFLDSDVL---TRPL-NIMIPKFLQ-FFKHP-SPKIRSHA 194 (885)
T ss_pred HHHHHHHhcCCc-ccccchhHHHHH--------HHHhhhHHHHhhhcc---cCch-HHhHHHHHH-HHhCC-ChhHHHHH
Confidence 456667776433 111122233333 799888888876321 1111 112344443 55666 55666666
Q ss_pred HHHHHHHhcCCC-------hHHHHHHhhh------------cchHHHHHHHhhcccccCCCCCCCCCCCCCCCCcchHHH
Q 003519 383 ENIILSCLECKN-------APLIEHLLHE------------CNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGH 443 (813)
Q Consensus 383 e~II~~ile~~n-------~~Lv~~LF~~------------~~Li~rIlea~k~~~~~~~nk~t~~~~gk~~~R~GYMGH 443 (813)
..||.+.+=..+ +.++.+||.- |+-+-.+++-.- --.|-|
T Consensus 195 ~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~---------------------dkl~ph 253 (885)
T KOG2023|consen 195 VGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRP---------------------DKLVPH 253 (885)
T ss_pred HhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcH---------------------Hhcccc
Confidence 777776653222 3445555552 222223333210 124667
Q ss_pred HHHHHHHHHHhcC-CcHHHHHHHhcchhHHHHHHHHhh
Q 003519 444 LTRISNKLIQLGN-NNSEIHAYLQENSEWNDWQINVLS 480 (813)
Q Consensus 444 Lt~IAN~Lv~~~~-~~~~I~~~Lq~~~~W~~fv~~~L~ 480 (813)
|-.|-++..+... .++.| .|+.-+-|-.|.+..+.
T Consensus 254 l~~IveyML~~tqd~dE~V--ALEACEFwla~aeqpi~ 289 (885)
T KOG2023|consen 254 LDNIVEYMLQRTQDVDENV--ALEACEFWLALAEQPIC 289 (885)
T ss_pred hHHHHHHHHHHccCcchhH--HHHHHHHHHHHhcCcCc
Confidence 7778888777643 22322 23444679998876654
No 20
>PTZ00429 beta-adaptin; Provisional
Probab=33.18 E-value=1.1e+03 Score=29.81 Aligned_cols=213 Identities=18% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHhhCchHHHHHHHHHhcc---ccccccchhhhHHHHh----------hhhHHHHHHHhcCCCCChHHHHhHHHHHHH
Q 003519 153 RLVDLIGITSIMEVLIRLIGA---DEHMYTNFTESMQWIE----------DTNVLEMIVDKFSSSDSPEVHANAAETLCS 219 (813)
Q Consensus 153 ~LLkHI~~~~ImDlLlrLIt~---de~~~~~~~~il~WL~----------eq~LIerLl~~L~~s~s~evh~NaaeiL~e 219 (813)
+.|..|..+.|.+.++.-|.- |..+|--++.++.-+. +.+++++|.++|. +.++.+..||.-.|++
T Consensus 127 RtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~-D~dp~Vv~nAl~aL~e 205 (746)
T PTZ00429 127 RTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLN-DNNPVVASNAAAIVCE 205 (746)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhc-CCCccHHHHHHHHHHH
Q ss_pred HHhcCchhH-------------------------HhhcCC-----hHHHHHHHHHHhc--CCCCcccccceeeeeeeccC
Q 003519 220 ITRSAPPAL-------------------------AAKISS-----PNFIGRLFRHALE--NSRPKSVLVNSLSICISLLD 267 (813)
Q Consensus 220 IIr~spn~L-------------------------~~~L~S-----~e~I~~Ll~~iL~--~~~~~S~Lvn~lsIlI~LL~ 267 (813)
|...+|..+ ++-|.. .+....+++.++. ...+.+++..++.+++.+..
T Consensus 206 I~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~ 285 (746)
T PTZ00429 206 VNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLAS 285 (746)
T ss_pred HHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q ss_pred ccccccchhhhhhccccCCCccccCccchHHHHHhHHHHHHhhccCccccccccccCcccCCCcchhHHHHHHHHHHHhc
Q 003519 268 PKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTV 347 (813)
Q Consensus 268 ~~R~~~s~y~~~~~~l~~~~~~~~~Pe~l~~il~~L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLKIVELIa~LL~~ 347 (813)
.. +|+.+..++.+++.-+-.|...+.+ .|+-+++-|..|++.
T Consensus 286 ~~----------------------~~~~~~~~~~rl~~pLv~L~ss~~e----------------iqyvaLr~I~~i~~~ 327 (746)
T PTZ00429 286 RC----------------------SQELIERCTVRVNTALLTLSRRDAE----------------TQYIVCKNIHALLVI 327 (746)
T ss_pred cC----------------------CHHHHHHHHHHHHHHHHHhhCCCcc----------------HHHHHHHHHHHHHHH
Q ss_pred CcHHHHHHHHHhhhHHHHHHHH-hhcCCCchhHHHHHHHHHHHhcCCC-hHHHHHHhh-----hcchHHHHHHH
Q 003519 348 GSEAAEKELIRHGAVRRILDLF-FEYPYNNFLHHHVENIILSCLECKN-APLIEHLLH-----ECNLVGKILEA 414 (813)
Q Consensus 348 ~n~~i~~~Li~~~ii~~LLdLF-FkYpwNNfLH~~Ve~II~~ile~~n-~~Lv~~LF~-----~~~Li~rIlea 414 (813)
.. .++..-++.| .+|.=-+..-..-.+|+..+.+..| ..++..|-. +..+..+.+.+
T Consensus 328 ~P----------~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrA 391 (746)
T PTZ00429 328 FP----------NLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRA 391 (746)
T ss_pred CH----------HHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHH
No 21
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=32.24 E-value=8e+02 Score=27.88 Aligned_cols=127 Identities=13% Similarity=0.234 Sum_probs=79.4
Q ss_pred chHHHHHHhhcCHHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHHh-hHHHHHHHHhh--CchHHHH
Q 003519 89 EVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAH-QEIMARLVDLI--GITSIME 165 (813)
Q Consensus 89 dv~~I~d~Lvede~lL~~L~sfL~~~~~ln~llAgYFsKVv~~LL~rk~~eml~fLk~~-~~~vd~LLkHI--~~~~ImD 165 (813)
-...+...++.++ .+.++|.+++... =-.|+---.++..||.+...-.-+||..+ ..|+..+-+.| ++...--
T Consensus 152 k~e~l~~~iL~~~-~f~~ff~~~~~~~---Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkr 227 (335)
T PF08569_consen 152 KHESLAKIILYSE-CFWKFFKYVQLPN---FDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKR 227 (335)
T ss_dssp TSHHHHHHHHTSG-GGGGHHHHTTSSS---HHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHH
T ss_pred hhHHHHHHHhCcH-HHHHHHHHhcCCc---cHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeeh
Confidence 4455555566543 4445777776432 22444445788888988887778888764 45666555544 3344444
Q ss_pred HHHHHhcc---ccccccchhhhHHHHhhhhHHHHHHHhcCCCCChHHHHhHHHHHHHHHhc
Q 003519 166 VLIRLIGA---DEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRS 223 (813)
Q Consensus 166 lLlrLIt~---de~~~~~~~~il~WL~eq~LIerLl~~L~~s~s~evh~NaaeiL~eIIr~ 223 (813)
--+||++. +.. +..-+..|..+.+-+..++..|.. .+..++.-|..+++=.+..
T Consensus 228 qslkLL~ellldr~---n~~vm~~yi~~~~nLkl~M~lL~d-~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 228 QSLKLLGELLLDRS---NFNVMTRYISSPENLKLMMNLLRD-KSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHHSGG---GHHHHHHHTT-HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHchh---HHHHHHHHHCCHHHHHHHHHHhcC-cchhhhHHHHHHHHHHHhC
Confidence 45555553 333 455577899988888888877754 5567888899999988865
No 22
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=31.66 E-value=4.4e+02 Score=30.97 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=33.5
Q ss_pred hHHHHHHHHHhccccccccchhhhHHHHhhhhHHHHHHHhcCCCCChHH
Q 003519 161 TSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEV 209 (813)
Q Consensus 161 ~~ImDlLlrLIt~de~~~~~~~~il~WL~eq~LIerLl~~L~~s~s~ev 209 (813)
..+.||+||.+.....+ ..+..=+-++.+|-||+++|++...-++
T Consensus 150 qlvye~~Lrf~~sp~~d----~~vaK~yid~~FvlkLLdLFdSEDpRER 194 (457)
T KOG2085|consen 150 QLVYEFLLRFLESPDFD----PSVAKKYIDQKFVLKLLDLFDSEDPRER 194 (457)
T ss_pred HHHHHHHHHHHhCcccC----HHHHHHHhhHHHHHHHHHHhcCCChHHH
Confidence 46788999998775543 2344556689999999999998877665
No 23
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=31.48 E-value=2.8e+02 Score=31.04 Aligned_cols=55 Identities=20% Similarity=0.357 Sum_probs=34.2
Q ss_pred hhhhHHHHHHHHHhcCchhHHHHHHHhhHHHHHHHHhhC----------chHHHHHHHHHhccccc
Q 003519 121 LAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIG----------ITSIMEVLIRLIGADEH 176 (813)
Q Consensus 121 lAgYFsKVv~~LL~rk~~eml~fLk~~~~~vd~LLkHI~----------~~~ImDlLlrLIt~de~ 176 (813)
+.+|+-=++..+...+...+++.++.+ ..|-.+|+|+. .+.|+.+|++-+..++.
T Consensus 115 li~FL~~~i~~~~~~k~~~Y~~LVk~N-~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~ 179 (292)
T PF13929_consen 115 LISFLKLVIINLSSNKSFNYWDLVKRN-KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDEN 179 (292)
T ss_pred HHHHHHHHHhccccccchHHHHHHHhh-HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccc
Confidence 344444444455555544577777766 45556666654 46789999998888544
No 24
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=31.01 E-value=3e+02 Score=26.74 Aligned_cols=57 Identities=14% Similarity=0.301 Sum_probs=45.4
Q ss_pred hHHHHHHHhcCCCCChHHHHhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCC
Q 003519 192 NVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENS 249 (813)
Q Consensus 192 ~LIerLl~~L~~s~s~evh~NaaeiL~eIIr~spn~L~~~L~S~e~I~~Ll~~iL~~~ 249 (813)
..+..|-.+|.. .++.++..|-.+|-.++..+...+...+.+.+++..|...+-...
T Consensus 42 ea~~~l~krl~~-~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~ 98 (140)
T PF00790_consen 42 EAARALRKRLKH-GNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKK 98 (140)
T ss_dssp HHHHHHHHHHTT-SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCC
Confidence 344555555655 778999999999999999888899999999999999887666543
No 25
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=30.26 E-value=1.2e+02 Score=35.52 Aligned_cols=123 Identities=15% Similarity=0.143 Sum_probs=74.3
Q ss_pred hhhhhHHHHHHHHHhcC--chhHHHHHHHhhHHHHHHHHhhCch--HHHHHHHHHhcccccccc-c--hhhhHHHHhh--
Q 003519 120 LLAGYFSKVVICLLLRK--TVPLMHYIKAHQEIMARLVDLIGIT--SIMEVLIRLIGADEHMYT-N--FTESMQWIED-- 190 (813)
Q Consensus 120 llAgYFsKVv~~LL~rk--~~eml~fLk~~~~~vd~LLkHI~~~--~ImDlLlrLIt~de~~~~-~--~~~il~WL~e-- 190 (813)
++-+-..|.+..|-.|| .+++.+.|..-.+-+.+-.+++.+. -..|+....+-=...-.. . +..+ +=|++
T Consensus 286 mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa-~rlnenn 364 (442)
T KOG2759|consen 286 MVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENA-DRLNENN 364 (442)
T ss_pred HHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhH-HHHhhcc
Confidence 34445567788888777 3466666665556666667776554 233333322221110000 0 1111 12333
Q ss_pred hhHHHHHHHhcCCCCChHHHHhHHHHHHHHHhcCc--hhHHhhcCChHHHHHHHH
Q 003519 191 TNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAP--PALAAKISSPNFIGRLFR 243 (813)
Q Consensus 191 q~LIerLl~~L~~s~s~evh~NaaeiL~eIIr~sp--n~L~~~L~S~e~I~~Ll~ 243 (813)
..++..|+..|..+.++-+-+-||.=+-+.+|..| ...+.++--.+-|.+|++
T Consensus 365 yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Lln 419 (442)
T KOG2759|consen 365 YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLN 419 (442)
T ss_pred HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhc
Confidence 56788888889888888888888888999999876 356677777776666653
No 26
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=29.14 E-value=1.2e+02 Score=32.14 Aligned_cols=6 Identities=33% Similarity=0.811 Sum_probs=2.2
Q ss_pred CCCCCC
Q 003519 763 SGTPSE 768 (813)
Q Consensus 763 ~~~~~~ 768 (813)
|+.|.+
T Consensus 180 pssPae 185 (205)
T PF12238_consen 180 PSSPAE 185 (205)
T ss_pred CCCCCC
Confidence 333333
No 27
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=27.59 E-value=3.2e+02 Score=33.85 Aligned_cols=136 Identities=26% Similarity=0.385 Sum_probs=0.0
Q ss_pred HHHHHhcCchhHHHHHHHh----------hHHHHHHHHhh---CchHHHHHHHHHhccccccccchhhhHHHHhhhhHHH
Q 003519 129 VICLLLRKTVPLMHYIKAH----------QEIMARLVDLI---GITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLE 195 (813)
Q Consensus 129 v~~LL~rk~~eml~fLk~~----------~~~vd~LLkHI---~~~~ImDlLlrLIt~de~~~~~~~~il~WL~eq~LIe 195 (813)
+..++.......++.++.. +-+|..|+... +...++++|..+ .++ ....|+.
T Consensus 9 l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~s~~~~~il~~~---~~P------------~~K~~~~ 73 (668)
T PF04388_consen 9 LLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLSTNSQRALEILVGV---QEP------------HDKHLFD 73 (668)
T ss_pred HHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCcHHHHHHHHhc---CCc------------cHHHHHH
Q ss_pred HHHHhcCCCCChHHHHhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcccccceeeeeeeccCccccccch
Q 003519 196 MIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGT 275 (813)
Q Consensus 196 rLl~~L~~s~s~evh~NaaeiL~eIIr~spn~L~~~L~S~e~I~~Ll~~iL~~~~~~S~Lvn~lsIlI~LL~~~R~~~s~ 275 (813)
+|=+.|.. +.--.-+--+||.|++..|.-+..-+..+-+-.-|-...+.... .++..++.+++.||
T Consensus 74 ~l~~~~~~---~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~--~~~~~al~~LimlL--------- 139 (668)
T PF04388_consen 74 KLNDYFVK---PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSI--TVVSSALLVLIMLL--------- 139 (668)
T ss_pred HHHHHHcC---chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccH--HHHHHHHHHHHHHh---------
Q ss_pred hhhhhccccCCCccccCccchHHHHHhHHHHHHhh
Q 003519 276 YYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLL 310 (813)
Q Consensus 276 y~~~~~~l~~~~~~~~~Pe~l~~il~~L~~l~~LL 310 (813)
|-+-..+.++|.+|+.++
T Consensus 140 -----------------P~ip~~l~~~L~~Lf~If 157 (668)
T PF04388_consen 140 -----------------PHIPSSLGPHLPDLFNIF 157 (668)
T ss_pred -----------------ccccchhhHHHHHHHHHH
No 28
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=25.48 E-value=3.7e+02 Score=27.47 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=31.5
Q ss_pred HHHHhhhhHHHHHHHhcCCCCChHHHHhHHHHHHHHHhcCch
Q 003519 185 MQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPP 226 (813)
Q Consensus 185 l~WL~eq~LIerLl~~L~~s~s~evh~NaaeiL~eIIr~spn 226 (813)
.++..++=-+++|+..|.. .+.+++.|+--+|.++...+++
T Consensus 95 y~~V~~evt~~~Li~hLq~-~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 95 YQLVEQEVTLESLIRHLQV-SNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHhccCCHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcCCh
Confidence 3455555457788888866 7789999999999999987764
No 29
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.30 E-value=1.5e+03 Score=29.00 Aligned_cols=232 Identities=18% Similarity=0.323 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCch---------hHHHHHHHhhHHHHHHHHhh------CchHHHHH
Q 003519 102 ELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTV---------PLMHYIKAHQEIMARLVDLI------GITSIMEV 166 (813)
Q Consensus 102 ~lL~~L~sfL~~~~~ln~llAgYFsKVv~~LL~rk~~---------eml~fLk~~~~~vd~LLkHI------~~~~ImDl 166 (813)
.++..|..||+.+. .++-+|=++.++.++..|.. .+-.|+... +.+|++|+ ++.-+|..
T Consensus 498 ~~~p~li~~L~a~s---~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~l---l~nLf~a~s~p~~~EneylmKa 571 (960)
T KOG1992|consen 498 ALLPRLIRFLEAES---RVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEIL---LTNLFKALSLPGKAENEYLMKA 571 (960)
T ss_pred HHHHHHHHhccCcc---hHHHHHHHHHHHhccccccCccccccchhhcchHHHHH---HHHHHHhccCCcccccHHHHHH
Q ss_pred HHHHhccccccccchhhhHHHHhh--hhHHHHHHHhcCCCCChHHHHhHHHHHHHHHh----cCchhHHhhcCChHHHHH
Q 003519 167 LIRLIGADEHMYTNFTESMQWIED--TNVLEMIVDKFSSSDSPEVHANAAETLCSITR----SAPPALAAKISSPNFIGR 240 (813)
Q Consensus 167 LlrLIt~de~~~~~~~~il~WL~e--q~LIerLl~~L~~s~s~evh~NaaeiL~eIIr----~spn~L~~~L~S~e~I~~ 240 (813)
++|+|+..+.. ++-+.-. ..|.+-+-.--.+..++.......+.+|.+|| .+|..+ +...+.
T Consensus 572 ImRii~i~~~~------i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~v------s~~e~a 639 (960)
T KOG1992|consen 572 IMRIISILQSA------IIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAV------SSLEEA 639 (960)
T ss_pred HHHHHHhCHHh------hhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHH------HHHHHH
Q ss_pred HH---HHHhcCCCCcccccceeeeeeeccCccccccchhhhhhccccCCCccccCccchHHHHHhHHHHHHhhccCcccc
Q 003519 241 LF---RHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDVSSEES 317 (813)
Q Consensus 241 Ll---~~iL~~~~~~S~Lvn~lsIlI~LL~~~R~~~s~y~~~~~~l~~~~~~~~~Pe~l~~il~~L~~l~~LL~~~~~~~ 317 (813)
|+ ..+|... +..++++.=.++..|-.....
T Consensus 640 L~p~fq~Il~eD----------------------------------------------I~EfiPYvfQlla~lve~~~~- 672 (960)
T KOG1992|consen 640 LFPVFQTILSED----------------------------------------------IQEFIPYVFQLLAVLVEHSSG- 672 (960)
T ss_pred HHHHHHHHHHHH----------------------------------------------HHHHHHHHHHHHHHHHHhcCC-
Q ss_pred ccccccCcccCCCcchhH--------HHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHH
Q 003519 318 SLLTTYGKLQPPLGKHRL--------KIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSC 389 (813)
Q Consensus 318 ~l~Tt~G~l~pPLG~~RL--------KIVELIa~LL~~~n~~i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~i 389 (813)
.++-+|-.+.|||-..+| .+++|+.++|+++...+. ..+-+.-+|-.|-|------..++=|.++..|
T Consensus 673 ~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~----~~~~l~~iLGifqkLiaSka~Dh~GF~LLn~i 748 (960)
T KOG1992|consen 673 TIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVE----AADKLSGILGIFQKLIASKANDHHGFYLLNTI 748 (960)
T ss_pred CCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhc----ccccchhHHHHHHHHhcCcccchhHHHHHHHH
Q ss_pred hcCCChH----HHHHHh
Q 003519 390 LECKNAP----LIEHLL 402 (813)
Q Consensus 390 le~~n~~----Lv~~LF 402 (813)
+...+.. ..+++|
T Consensus 749 ~~~~~~~~~~py~k~i~ 765 (960)
T KOG1992|consen 749 IESIPPNELAPYMKQIF 765 (960)
T ss_pred HhcCCHhhhhHHHHHHH
No 30
>COG5217 BIM1 Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton]
Probab=25.15 E-value=1.3e+02 Score=33.35 Aligned_cols=116 Identities=12% Similarity=0.080 Sum_probs=64.2
Q ss_pred CcchhHHHHHHHHHHHhcCcHHHH--------HHHHHhhhHHHHHHHHhhcCCCchh-HHHHHHHHHHHhcCCC--hH--
Q 003519 330 LGKHRLKIVEFISVLLTVGSEAAE--------KELIRHGAVRRILDLFFEYPYNNFL-HHHVENIILSCLECKN--AP-- 396 (813)
Q Consensus 330 LG~~RLKIVELIa~LL~~~n~~i~--------~~Li~~~ii~~LLdLFFkYpwNNfL-H~~Ve~II~~ile~~n--~~-- 396 (813)
+|..|-.++-++.+++..+-..|+ +.+.+ -++.-|=+--.+|||++-+ |.-=..|+|+||-.+- ..
T Consensus 5 l~esr~ell~w~N~v~~L~l~rIEdcg~g~am~qI~d-siY~Dlp~~~V~f~~~aey~~~~n~kILq~~Fs~~Gidk~v~ 83 (342)
T COG5217 5 LVESREELLFWENVVVRLDLQRIEDCGEGFAMQQIHD-SIYVDLPDSLVRFPWIAEYKHPGNGKILQLLFSDYGIDKAVL 83 (342)
T ss_pred hhhhHHHHHHHHHHHhhcCceehhhhccchhHHHHHH-HHhccCcHhhccccchhheecCCchhHHHHHHHhcCcchhhh
Confidence 444555566666666665543332 12222 3333334455689999988 6666899999996431 11
Q ss_pred ---HHH-HHhhhcchHHHHHHHhhcccccCCCCCCCCCCCCCCCCcchHHH-HHH-HHHHHHHh
Q 003519 397 ---LIE-HLLHECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGH-LTR-ISNKLIQL 454 (813)
Q Consensus 397 ---Lv~-~LF~~~~Li~rIlea~k~~~~~~~nk~t~~~~gk~~~R~GYMGH-Lt~-IAN~Lv~~ 454 (813)
|+. -+...-.|++.+.+.|-+..-. ..++ ...|+||||- .|| .++.+...
T Consensus 84 v~~lvrck~qdnLeflQwlk~hWvr~~~~-------~~yd-~~arr~~r~p~~tr~~~~~~rs~ 139 (342)
T COG5217 84 VLVLVRCKLQDNLEFLQWLKDHWVRNLGH-------ISYD-RNARRLGRTPKSTRELIEWIRSL 139 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCC-------CccC-hhHHhcCCCcchHHHHHhhhhhc
Confidence 111 1222345777888888654211 1233 3468899976 555 56655544
No 31
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=24.93 E-value=37 Score=23.07 Aligned_cols=11 Identities=64% Similarity=1.171 Sum_probs=7.4
Q ss_pred CCchHHHHHhh
Q 003519 30 DEDDIIQECKA 40 (813)
Q Consensus 30 DEddlLQE~K~ 40 (813)
|+|+||+||-.
T Consensus 1 d~deiL~~CI~ 11 (20)
T PF05924_consen 1 DEDEILQECIG 11 (20)
T ss_dssp --HHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 46789999964
No 32
>PF04802 SMK-1: Component of IIS longevity pathway SMK-1; InterPro: IPR006887 This is a conserved region which characterises a number of eukaryotic proteins of unknown function.
Probab=24.70 E-value=3.2e+02 Score=28.58 Aligned_cols=133 Identities=18% Similarity=0.207 Sum_probs=71.5
Q ss_pred hhhccchHHHHHHhhcCHHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHH-HhhHHHHHHHHhhCchH
Q 003519 84 EIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIK-AHQEIMARLVDLIGITS 162 (813)
Q Consensus 84 EILssdv~~I~d~Lvede~lL~~L~sfL~~~~~ln~llAgYFsKVv~~LL~rk~~eml~fLk-~~~~~vd~LLkHI~~~~ 162 (813)
-|+-+.-..|.+.|+++ +.+..++..|+-++.....-|+|= ..+.++. .+-+-|. .++.+...+=+.....-
T Consensus 35 ~li~ln~~~i~e~llsd-e~i~~vvG~LEYDp~~~~~ka~hR-----~fL~~~~-~FkeVIpi~~~~l~~kIhqtyRlqY 107 (193)
T PF04802_consen 35 TLILLNDPEIFEILLSD-ENIMDVVGILEYDPEFPQPKANHR-----EFLKEKA-KFKEVIPIPDPELLSKIHQTYRLQY 107 (193)
T ss_pred HHHHcCCchHHHHHhch-HHHHHHhhhhccCCcccccccchH-----HHHHhCC-CCceeeecCCHHHHHHHHHHHhHHH
Confidence 34444556688888885 555566777776654332222220 1111111 1111111 12333333333333334
Q ss_pred HHHHHHHHhcccccc--------ccchhhhHHHHhh-hhHHHHHHHhcC-CCCChHHHHhHHHHHHHHHhcC
Q 003519 163 IMEVLIRLIGADEHM--------YTNFTESMQWIED-TNVLEMIVDKFS-SSDSPEVHANAAETLCSITRSA 224 (813)
Q Consensus 163 ImDlLlrLIt~de~~--------~~~~~~il~WL~e-q~LIerLl~~L~-~s~s~evh~NaaeiL~eIIr~s 224 (813)
+-|+++.= ..|++. +-+..++++++.+ .+++++|...+. +..+.+....+.-+|++++.++
T Consensus 108 LkDvvL~r-~lDd~~~s~L~s~I~~n~~~Iv~~l~~d~~fL~~Lf~~l~~~~~~~~~r~d~v~fL~e~c~~a 178 (193)
T PF04802_consen 108 LKDVVLPR-FLDDNTFSTLNSLIFFNQVEIVNMLQDDENFLEELFAILKDPSTSDERRRDGVKFLHEFCSLA 178 (193)
T ss_pred HHHHHccc-ccccHHHHHHHHHHHHhHHHHHHHHHhCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 44443331 112221 1134678999976 569999999995 4556788888999999998654
No 33
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=24.69 E-value=1.1e+02 Score=31.77 Aligned_cols=69 Identities=16% Similarity=0.089 Sum_probs=43.3
Q ss_pred HHHHHHHhcCCcHHHHHHHh-cchhHHHHHHHHhhhhhhhhhhhhccCCCCcccCCCCCCCCcccccCCcchHHHHHhhh
Q 003519 447 ISNKLIQLGNNNSEIHAYLQ-ENSEWNDWQINVLSKRNTLENIYQWACGRPTALHDRGRDSDDDDYQNRDYDVAALANNL 525 (813)
Q Consensus 447 IAN~Lv~~~~~~~~I~~~Lq-~~~~W~~fv~~~L~k~N~ienv~~~~~G~p~~~~d~~~dsDddd~~d~d~d~~~~~~~l 525 (813)
|||.|-+.++.+|.+..++- ...+|..|++..++ .|++|++...-.++-++ . --+++.++-|
T Consensus 11 IAn~IK~~AK~~p~FR~~~~ip~Aq~~hr~~~r~k---------mr~lg~g~~v~i~PLnE-a-------~Ave~gadlL 73 (181)
T KOG3335|consen 11 IANQIKRQAKVHPFFRTKICIPPAQLYHRFTVRLK---------MRALGLGGPVVIRPLNE-A-------AAVEAGADLL 73 (181)
T ss_pred HHHHHHHHhccChHhHhhhccCHHHhhHHHHHHHH---------HHHhcCCCCcccCCCCH-H-------HHHHHHHHHH
Confidence 89999999999999985543 45789999887774 34444443333344321 1 1244556667
Q ss_pred hhhhhhc
Q 003519 526 SQAFRYG 532 (813)
Q Consensus 526 ~qaf~y~ 532 (813)
++.|-|.
T Consensus 74 gE~~iF~ 80 (181)
T KOG3335|consen 74 GELFIFS 80 (181)
T ss_pred hhHHhee
Confidence 8765544
No 34
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=21.50 E-value=5.2e+02 Score=25.60 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHH---hhcCCCc----hhHHHHHHHHHHHhcCCChHHHHHHhhhcchH
Q 003519 336 KIVEFISVLLTVGSEAAEKELIRHGAVRRILDLF---FEYPYNN----FLHHHVENIILSCLECKNAPLIEHLLHECNLV 408 (813)
Q Consensus 336 KIVELIa~LL~~~n~~i~~~Li~~~ii~~LLdLF---FkYpwNN----fLH~~Ve~II~~ile~~n~~Lv~~LF~~~~Li 408 (813)
+++.=+...|+++...-.+.+++.|=+..|++++ -++.+.+ .++..+..|+.+|++. ..=..+++.....+
T Consensus 83 ~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~--~~G~~~v~~~~~~v 160 (187)
T PF06371_consen 83 KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNT--KYGLEAVLSHPDSV 160 (187)
T ss_dssp HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSS--HHHHHHHHCSSSHH
T ss_pred HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHcc--HHHHHHHHcCcHHH
Confidence 6777778888998877777777777666665544 4445555 7889999999999974 23377888888888
Q ss_pred HHHHHH
Q 003519 409 GKILEA 414 (813)
Q Consensus 409 ~rIlea 414 (813)
..|...
T Consensus 161 ~~i~~~ 166 (187)
T PF06371_consen 161 NLIALS 166 (187)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 877654
No 35
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=20.18 E-value=2.7e+03 Score=29.91 Aligned_cols=309 Identities=17% Similarity=0.142 Sum_probs=155.6
Q ss_pred hchhHHHHhccHHHHHHHHHHhccCCCcchhhhhccccccchhhhhccchHHHHHHhhcCHHHHHHHHhhcCCCCCCChh
Q 003519 41 LNGRLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTL 120 (813)
Q Consensus 41 ~N~KLIdFL~k~e~lekLI~YI~~e~~ed~e~k~~~Kyp~iAsEILssdv~~I~d~Lvede~lL~~L~sfL~~~~~ln~l 120 (813)
.|..|-..|...+.++-||+.+.....+-.. ..-.+--.|+.........++... .+..|.++|.+... .
T Consensus 392 gN~~l~~~L~~~daik~LV~LL~~~~~evQ~------~Av~aL~~L~~~~~e~~~aIi~~g-gIp~LV~LL~s~s~-~-- 461 (2102)
T PLN03200 392 GNAYLSRKLNHAEAKKVLVGLITMATADVQE------ELIRALSSLCCGKGGLWEALGGRE-GVQLLISLLGLSSE-Q-- 461 (2102)
T ss_pred CChHHHHHHHhccchhhhhhhhccCCHHHHH------HHHHHHHHHhCCCHHHHHHHHHcC-cHHHHHHHHcCCCH-H--
Confidence 3565555565556677777777765321111 111122234555555566666553 47888999987542 1
Q ss_pred hhhhHHHHHHHHHhcCchhHHHHHHHhhHHHHHHHHhhCc--hHHHH----HHHHHhccccccccchhhhHHHHhhhhHH
Q 003519 121 LAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGI--TSIME----VLIRLIGADEHMYTNFTESMQWIEDTNVL 194 (813)
Q Consensus 121 lAgYFsKVv~~LL~rk~~eml~fLk~~~~~vd~LLkHI~~--~~ImD----lLlrLIt~de~~~~~~~~il~WL~eq~LI 194 (813)
.--+=++++..|-......-.. |.. .+.+..|++.+.. ..+-+ .|..|-. .. .++...+.+.+.|
T Consensus 462 iQ~~A~~~L~nLa~~ndenr~a-Iie-aGaIP~LV~LL~s~~~~iqeeAawAL~NLa~-~~------~qir~iV~~aGAI 532 (2102)
T PLN03200 462 QQEYAVALLAILTDEVDESKWA-ITA-AGGIPPLVQLLETGSQKAKEDSATVLWNLCC-HS------EDIRACVESAGAV 532 (2102)
T ss_pred HHHHHHHHHHHHHcCCHHHHHH-HHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC-Cc------HHHHHHHHHCCCH
Confidence 1112234555554333322222 222 2345555554432 12211 1222222 11 1122334567888
Q ss_pred HHHHHhcCCCCChHHHHhHHHHHHHHHhcCch----hHHhhcCChH--HHH---HHHHHHhcCCCC-----c-cccccee
Q 003519 195 EMIVDKFSSSDSPEVHANAAETLCSITRSAPP----ALAAKISSPN--FIG---RLFRHALENSRP-----K-SVLVNSL 259 (813)
Q Consensus 195 erLl~~L~~s~s~evh~NaaeiL~eIIr~spn----~L~~~L~S~e--~I~---~Ll~~iL~~~~~-----~-S~Lvn~l 259 (813)
+.|++.|... +...+.+|+..|+.|++.+.+ +|..-|.++. ... +.+.+++.-... . ..-..++
T Consensus 533 ppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL 611 (2102)
T PLN03200 533 PALLWLLKNG-GPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDAL 611 (2102)
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccH
Confidence 9999998665 688999999999999876543 2322232222 111 122222221100 0 0012456
Q ss_pred eeeeeccCccccccchhhhhhccccCCCccccCccchHHHH--HhHHHHHHhhccCccccccccccCcccCCCcchhHHH
Q 003519 260 SICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGML--GRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKI 337 (813)
Q Consensus 260 sIlI~LL~~~R~~~s~y~~~~~~l~~~~~~~~~Pe~l~~il--~~L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLKI 337 (813)
..+..|++.. +...|..--.-+. ......+.....++ .-+..++++|..... ..|-..
T Consensus 612 ~~Lv~LL~sg--s~~ikk~Aa~iLs--nL~a~~~d~~~avv~agaIpPLV~LLss~~~----------------~v~keA 671 (2102)
T PLN03200 612 RTLIQLLSSS--KEETQEKAASVLA--DIFSSRQDLCESLATDEIINPCIKLLTNNTE----------------AVATQS 671 (2102)
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHH--HHhcCChHHHHHHHHcCCHHHHHHHHhcCCh----------------HHHHHH
Confidence 6666666532 1111110000000 00111222222222 235566666653221 145567
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhc
Q 003519 338 VEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLE 391 (813)
Q Consensus 338 VELIa~LL~~~n~~i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~ile 391 (813)
+.-+..|....+..-...+++.|+++.|++|.-. ++.-+..+....+..++.
T Consensus 672 A~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~--~d~~v~e~Al~ALanLl~ 723 (2102)
T PLN03200 672 ARALAALSRSIKENRKVSYAAEDAIKPLIKLAKS--SSIEVAEQAVCALANLLS 723 (2102)
T ss_pred HHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhC--CChHHHHHHHHHHHHHHc
Confidence 7777888876666544567899999999999843 577777777777777764
Done!