Query 003519
Match_columns 813
No_of_seqs 212 out of 381
Neff 5.3
Searched_HMMs 29240
Date Tue Mar 26 18:32:15 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003519.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1567-1571//hhsearch_pdb/003519hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b8j_A Importin subunit alpha- 1.0 1 1 28.8 20.9 117 102-225 117-235 (528)
2 1wcz_A Glutamyl endopeptidase; 1.0 1 1 26.0 0.3 32 729-760 211-242 (268)
3 1wa5_B Importin alpha subunit; 1.0 1 1 25.6 15.7 79 332-414 356-436 (530)
4 4hxt_A De novo protein OR329; 1.0 1 1 23.4 15.2 112 104-224 4-117 (252)
5 2wd6_A Agglutinin receptor; ce 1.0 1 1 23.3 1.1 14 554-567 156-169 (349)
6 3tpo_A Importin subunit alpha- 1.0 1 1 21.3 17.8 31 190-221 160-190 (529)
7 2npp_B PP2A, B subunit, serine 1.0 1 1 19.4 10.5 57 161-222 135-191 (449)
8 4db8_A Armadillo-repeat protei 1.0 1 1 18.8 12.3 34 188-222 92-125 (252)
9 2jdq_A Importin alpha-1 subuni 1.0 1 1 18.3 18.3 80 332-415 291-370 (450)
10 2fv2_A RCD1 required for cell 1.0 1 1 18.2 5.3 67 289-369 83-154 (268)
No 1
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=1.00 E-value=1 Score=28.83 Aligned_cols=117 Identities=15% Similarity=0.147 Sum_probs=58.9
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHCCCCCCCC
Q ss_conf 88999985019999999233552999999999419145999999736799999973193--1799999998224565655
Q 003519 102 ELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGI--TSIMEVLIRLIGADEHMYT 179 (813)
Q Consensus 102 ~lL~~L~sFL~~~~plnpllAgYFsKVv~~LL~rk~~e~l~fLk~~~~iid~LLkHI~~--~~ImDlLlrLI~~de~~~~ 179 (813)
..+..|..+|.... ++.+--.-..++..+...... ....+... +.+..|++.+.. ..+.+..+..++.--..
T Consensus 117 g~v~~Lv~lL~~~~--~~~v~~~A~~~L~~l~~~~~~-~~~~~~~~-g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~-- 190 (528)
T 4b8j_A 117 GVVPRFVQFLTRED--FPQLQFEAAWALTNIASGTSE-NTKVVIDH-GAVPIFVKLLGSSSDDVREQAVWALGNVAGD-- 190 (528)
T ss_dssp TCHHHHHHHHTCTT--CHHHHHHHHHHHHHHHTSCHH-HHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHHHT--
T ss_pred CCHHHHHHHHCCCC--CHHHHHHHHHHHHHHHCCCHH-HHHHHHHC-CCHHHHHHHHCCCCHHHHHHHHHHHHHHHCC--
T ss_conf 87999999847899--789999999999999679988-79999968-8678999885699999999999999999589--
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 5033679975545999999840999986799829999999995194
Q 003519 180 NFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAP 225 (813)
Q Consensus 180 ~~~~il~WL~eq~LIerLI~~L~~s~s~evh~NaaeiL~eIIr~sp 225 (813)
.......+.+.+.++.|+..|....+..+..+++..|..+.+..|
T Consensus 191 -~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~ 235 (528)
T 4b8j_A 191 -SPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP 235 (528)
T ss_dssp -CHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS
T ss_pred -CHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf -916689999778599999997348988999999999999975899
No 2
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1
Probab=1.00 E-value=1 Score=25.98 Aligned_cols=32 Identities=25% Similarity=0.660 Sum_probs=15.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88788999999999999999999999999999
Q 003519 729 KSIDENPSSKPSEPSESGSPSEPAESGTPSEP 760 (813)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (813)
.....+..++|.-|-+|+-||-|-+|+.|.+|
T Consensus 211 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 242 (268)
T 1wcz_A 211 EDINFANDDQPNNPDNPDNPNNPDNPNNPDEP 242 (268)
T ss_dssp TTCCBC--------------------------
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 75464775677778887788888998886667
No 3
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=1.00 E-value=1 Score=25.61 Aligned_cols=79 Identities=9% Similarity=-0.004 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHCCHHH
Q ss_conf 1147899999999820939999999995359999999862578804699999999997407996--89999961064279
Q 003519 332 KHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNA--PLIEHLLHECNLVG 409 (813)
Q Consensus 332 ~~RLKIVELIa~LL~~~n~~i~~eLi~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~iles~n~--~Li~~Lf~~c~Li~ 409 (813)
..|...+..+..|...+ ....+.+++.++++.|+.+.-. -+.-+...+..++..+...... .....++ ++++++
T Consensus 356 ~vr~~A~~aL~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~-~~~~l~ 431 (530)
T 1wa5_B 356 NIKKEACWTISNITAGN-TEQIQAVIDANLIPPLVKLLEV--AEYKTKKEACWAISNASSGGLQRPDIIRYLV-SQGCIK 431 (530)
T ss_dssp HHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHTTTCTHHHHHHH-HTTCHH
T ss_pred HHHHHHHHHHHHHHCCC-HHHHHHHHHCCCHHHHHHHHHC--CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH-HCCCHH
T ss_conf 89999999999997599-9999999988889999999856--9888999999999999816998199999999-888899
Q ss_pred HHHHH
Q ss_conf 99997
Q 003519 410 KILEA 414 (813)
Q Consensus 410 rIlea 414 (813)
.++..
T Consensus 432 ~L~~l 436 (530)
T 1wa5_B 432 PLCDL 436 (530)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 4
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=1.00 E-value=1 Score=23.37 Aligned_cols=112 Identities=19% Similarity=0.187 Sum_probs=47.0
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHCCCCCCCCCH
Q ss_conf 9999850199999992335529999999994191459999997367999999731931--79999999822456565550
Q 003519 104 MNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGIT--SIMEVLIRLIGADEHMYTNF 181 (813)
Q Consensus 104 L~~L~sFL~~~~plnpllAgYFsKVv~~LL~rk~~e~l~fLk~~~~iid~LLkHI~~~--~ImDlLlrLI~~de~~~~~~ 181 (813)
+..|..+|..+. +-..-.-.+++..+..... .....+.. .+.+..|++.+... .+.......+..--.. .
T Consensus 4 i~~L~~~L~~~~---~~~~~~a~~~L~~l~~~~~-~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~ 75 (252)
T 4hxt_A 4 VEKLVKLLTSTD---SETQKEAARDLAEIASGPA-SAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASG---P 75 (252)
T ss_dssp HHHHHHHTTCSC---HHHHHHHHHHHHHHHTSCH-HHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS---C
T ss_pred HHHHHHHHCCCC---HHHHHHHHHHHHHHHCCCC-HHHHHHHH-CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCC---C
T ss_conf 789999974898---7899999999999856982-88999998-78899999998299889999999999998769---8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 3367997554599999984099998679982999999999519
Q 003519 182 TESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSA 224 (813)
Q Consensus 182 ~~il~WL~eq~LIerLI~~L~~s~s~evh~NaaeiL~eIIr~s 224 (813)
......+.+.+.++.|+..+.. .+.++..+++..|..+....
T Consensus 76 ~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~ 117 (252)
T 4hxt_A 76 DEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGP 117 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHCCCHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCC
T ss_conf 5899999988987999998818-97889999999999998599
No 5
>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL, AG I/II protei surface adhesin, peptidoglycan-anchor; 2.30A {Streptococcus gordonii}
Probab=1.00 E-value=1 Score=23.34 Aligned_cols=14 Identities=7% Similarity=-0.012 Sum_probs=8.1
Q ss_pred CCCCCCCCEEEECC
Q ss_conf 45787660455012
Q 003519 554 YFDDESAEVVISSL 567 (813)
Q Consensus 554 ~~~~~~~~~~~s~~ 567 (813)
.|+|+...+.+...
T Consensus 156 i~~DPT~ti~~~~~ 169 (349)
T 2wd6_A 156 ASSDPTVTAWYNDY 169 (349)
T ss_dssp ECSSTTTCEEEECT
T ss_pred EECCCCCEEEEEEE
T ss_conf 95499615999974
No 6
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=1.00 E-value=1 Score=21.32 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 54599999984099998679982999999999
Q 003519 190 DTNVLEMIVDKFSSSDSPEVHANAAETLCSIT 221 (813)
Q Consensus 190 eq~LIerLI~~L~~s~s~evh~NaaeiL~eII 221 (813)
+.+.|+.|+.+|.. .+.+++..|+..|..|.
T Consensus 160 ~~Gaip~Lv~LL~s-~~~~v~e~A~~aL~nLa 190 (529)
T 3tpo_A 160 DGGAIPAFISLLAS-PHAHISEQAVWALGNIA 190 (529)
T ss_dssp HTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHCC-CCHHHHHHHHHHHHHHH
T ss_conf 88889999998769-99899999999999874
No 7
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=1.00 E-value=1 Score=19.39 Aligned_cols=57 Identities=19% Similarity=0.287 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 17999999982245656555033679975545999999840999986799829999999995
Q 003519 161 TSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITR 222 (813)
Q Consensus 161 ~~ImDlLlrLI~~de~~~~~~~~il~WL~eq~LIerLI~~L~~s~s~evh~NaaeiL~eIIr 222 (813)
..|.++|+|++...+-.. . . .-.+ -++.+|.+|++.|++...-|+. ..-.+|..|..
T Consensus 135 qlVYe~llrfv~s~~f~~-~-~-~k~~-id~~Fi~~Ll~lfdSeDpRERd-~LktiLhrIY~ 191 (449)
T 2npp_B 135 QLVYEFFLRFLESPDFQP-N-I-AKKY-IDQKFVLQLLELFDSEDPRERD-FLKTTLHRIYG 191 (449)
T ss_dssp HHHHHHHHHHHTSTTCCS-T-T-GGGT-SCHHHHHHHHHTTTSSTHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCH-H-H-HHHH-CCHHHHHHHHHHCCCCCHHHHH-HHHHHHHHHHH
T ss_conf 999999999997667883-4-6-6531-7999999999881899857999-99999999999
No 8
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=1.00 E-value=1 Score=18.83 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 75545999999840999986799829999999995
Q 003519 188 IEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITR 222 (813)
Q Consensus 188 L~eq~LIerLI~~L~~s~s~evh~NaaeiL~eIIr 222 (813)
+.+.+.++.|+..|.. .++.++.+|+..|..|..
T Consensus 92 i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~ 125 (252)
T 4db8_A 92 VIDAGALPALVQLLSS-PNEQILQEALWALSNIAS 125 (252)
T ss_dssp HHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHCC-CCHHHHHHHHHHHHHHHC
T ss_conf 9976879999999859-988899999999987506
No 9
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=1.00 E-value=1 Score=18.34 Aligned_cols=80 Identities=11% Similarity=0.039 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHH
Q ss_conf 11478999999998209399999999953599999998625788046999999999974079968999996106427999
Q 003519 332 KHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKI 411 (813)
Q Consensus 332 ~~RLKIVELIa~LL~~~n~~i~~eLi~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~iles~n~~Li~~Lf~~c~Li~rI 411 (813)
..|...+..+..|...+ ....+.+++.++++.++.++-.- +.-.......++..+..+.+...+..++ +.++++.+
T Consensus 291 ~vr~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~l~-~~~~i~~L 366 (450)
T 2jdq_A 291 SIKKEACWTISNITAGN-RAQIQTVIDANIFPALISILQTA--EFRTRKEAAWAITNATSGGSAEQIKYLV-ELGCIKPL 366 (450)
T ss_dssp HHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHTCHHHH
T ss_pred HHHHHHHHHHHHHHCCC-HHHHHHHHHCCCHHHHHHHHHCC--CHHHHHHHHHHHHHHHCCCCHHHHHHHH-HCCCHHHH
T ss_conf 79999999999998499-99999999888899999998458--8889999999999998499999999999-88779999
Q ss_pred HHHH
Q ss_conf 9973
Q 003519 412 LEAE 415 (813)
Q Consensus 412 lea~ 415 (813)
++.-
T Consensus 367 ~~ll 370 (450)
T 2jdq_A 367 CDLL 370 (450)
T ss_dssp HHGG
T ss_pred HHHH
T ss_conf 9986
No 10
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=1.00 E-value=1 Score=18.18 Aligned_cols=67 Identities=21% Similarity=0.246 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHH-----HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 3459120688997-----27989986115855331113447546888411478999999998209399999999953599
Q 003519 289 VTVNPETVEGMLG-----RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVR 363 (813)
Q Consensus 289 ~~~~Pe~i~~il~-----~L~dl~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLKIVELIa~LL~~~n~~i~~eLi~~~ii~ 363 (813)
+..+|++...++. +|-.|+.. ....+|+-..||.....|.+|++.++..+..-|.+..+++
T Consensus 83 vAshpetr~~Fl~a~iplyLyPfL~t--------------~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiip 148 (268)
T 2fv2_A 83 VASHPETRSAFLAAHIPLFLYPFLHT--------------VSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIP 148 (268)
T ss_dssp HHHCTTTHHHHHHTTGGGGTHHHHHC--------------CCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHH
T ss_pred HHCCCCHHHHHHHCCCHHHHHHHHCC--------------CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 97085334688980665776245105--------------5678852045464887778876068599999998630899
Q ss_pred HHHHHH
Q ss_conf 999998
Q 003519 364 RILDLF 369 (813)
Q Consensus 364 ~LLdLF 369 (813)
.|+..+
T Consensus 149 lCLrim 154 (268)
T 2fv2_A 149 LCLRIM 154 (268)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999988
Done!