BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003520
(813 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49756|RBM25_HUMAN RNA-binding protein 25 OS=Homo sapiens GN=RBM25 PE=1 SV=3
Length = 843
Score = 113 bits (282), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 72/104 (69%)
Query: 705 KQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSST 764
K LI+ IP K ELF+Y ++W++ D + R+RPWI+KKI E++GEEE TLVD++ S
Sbjct: 739 KSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKV 798
Query: 765 QDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETGLA 808
H +L+ + +LD+EAE+F++KMWR+LI+E + + GL
Sbjct: 799 MAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLIYETEAKKIGLV 842
Score = 77.0 bits (188), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 67/139 (48%), Gaps = 23/139 (16%)
Query: 70 IPGVRPIMPPVVRPVPLPTVTPAEK---------------------PQTKVYVGKIAPTA 108
IP IM P V +PTV+ K P T V+VG I+ A
Sbjct: 40 IPVPMSIMAPAPT-VLVPTVSMVGKHLGARKDHPGLKAKENDENCGPTTTVFVGNISEKA 98
Query: 109 DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 168
+ +L CG V SWKR Q S G + FGFCE++ E LRALRLL+ I ++L
Sbjct: 99 SDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRALRLLHDLQIGEKKL 157
Query: 169 MLKVDQATREYLERYVDKK 187
++KVD T+ L+ + KK
Sbjct: 158 LVKVDAKTKAQLDEWKAKK 176
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 9/108 (8%)
Query: 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 154
P T V+VG I+ A + +L CG V SWKR Q S G + FGFCE++ E LRA
Sbjct: 85 PTTTVFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRA 143
Query: 155 LRLLNKFNIDGQELMLKVDQATREYLERYVDKKTENTKKLKETQDAGA 202
LRLL+ I ++L++KVD T+ L+ + K K+ + A
Sbjct: 144 LRLLHDLQIGEKKLLVKVDAKTKAQLDEW--------KAKKKASNGNA 183
>sp|B2RY56|RBM25_MOUSE RNA-binding protein 25 OS=Mus musculus GN=Rbm25 PE=1 SV=2
Length = 838
Score = 113 bits (282), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 72/104 (69%)
Query: 705 KQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSST 764
K LI+ IP K ELF+Y ++W++ D + R+RPWI+KKI E++GEEE TLVD++ S
Sbjct: 734 KSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKV 793
Query: 765 QDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETGLA 808
H +L+ + +LD+EAE+F++KMWR+LI+E + + GL
Sbjct: 794 MAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLIYETEAKKIGLV 837
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 70/149 (46%), Gaps = 23/149 (15%)
Query: 70 IPGVRPIMPPVVRPVPLPTVTPAEK---------------------PQTKVYVGKIAPTA 108
IP IM P V +PTV+ K P T V+VG I+ A
Sbjct: 40 IPVPMSIMAPAPT-VLVPTVSMVGKHLGARKDHPGLKLKENDENCGPTTTVFVGNISEKA 98
Query: 109 DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 168
+ +L CG V SWKR Q S G + FGFCE++ E LRALRLL+ I ++L
Sbjct: 99 SDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRALRLLHDLQIGEKKL 157
Query: 169 MLKVDQATREYLERYVDKKTENTKKLKET 197
++KVD T+ L+ + KK N ET
Sbjct: 158 LVKVDAKTKAQLDEWKAKKKANGNARPET 186
>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum
(isolate 3D7) GN=PF13_0198 PE=3 SV=1
Length = 3130
Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 76/132 (57%), Gaps = 7/132 (5%)
Query: 355 KEREIDRYEREAERERVRKEREQRRKIEEAEREYERCLKDWEYREREREKERQYEKEKEK 414
K +E +R ++E E +R +ER +R K E+ ++E E ++ E ++E +RQ ++ +K
Sbjct: 2740 KRQEQERLQKEEELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQK 2799
Query: 415 ERERKRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKRIR-EKEEDLADEVREEEEIAVAK 473
E E KR+++ + E+ E ++ E KR+++ R +KEE L + +E +
Sbjct: 2800 EEELKRQEQERLEREKQEQLQKEE------ELKRQEQERLQKEEALKRQEQERLQKEEEL 2853
Query: 474 RRAEEEQLQQQQ 485
+R E+E+L++++
Sbjct: 2854 KRQEQERLERKK 2865
Score = 34.7 bits (78), Expect = 3.6, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 18/119 (15%)
Query: 322 KASDHDRPETSSPDRSRVHDRRGRDKERDLKREKEREIDRYEREAERERVRKEREQRRKI 381
K + +R + + + +R R+K+ L +KE E+ R E+ER++KE +R+
Sbjct: 2790 KRQEQERLQKEEELKRQEQERLEREKQEQL--QKEEELKR----QEQERLQKEEALKRQ- 2842
Query: 382 EEAEREYERCLKDWEYREREREK-ERQYEKEKEKERERKRKKE-----ILYDEEEDEDD 434
E ER K+ E + +E+E+ ER+ + E+E+ K K E I+ DE E D
Sbjct: 2843 -----EQERLQKEEELKRQEQERLERKKIELAEREQHIKSKLESDMVKIIKDELTKEKD 2896
>sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
Length = 2876
Score = 42.7 bits (99), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 20/128 (15%)
Query: 322 KASDHDRPETSSPDRSRVHDRRGRDKERDLKREKEREIDRYE-REAERERVRKEREQRRK 380
K + DR + DR +V D+ RDK R+ R+K RE DR + RE +RE++R ER+ R K
Sbjct: 836 KGQEKDRDKVREKDRDKVRDK-DRDKVREKDRDKVREKDRDKLREKDREKIR-ERD-RDK 892
Query: 381 IEEAEREYERCLKDWEYREREREKERQYEKEKEKER------------ERKRKKEILYDE 428
E +R+ E+ + RE+++EKER +++KE+E+ E+KR KE+ D+
Sbjct: 893 GREKDRDKEQV----KTREKDQEKERLKDRDKEREKVRDKGRDRDRDQEKKRNKELTEDK 948
Query: 429 EEDEDDSR 436
+ E SR
Sbjct: 949 QAPEQRSR 956
Score = 40.0 bits (92), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 94/152 (61%), Gaps = 16/152 (10%)
Query: 335 DRSRVHDR---RGRDKERDLKREKEREIDRYEREAERERVRKEREQRRKIEEAEREYERC 391
DR + D+ +GR+K++D + EK RE DR ++E E+ R E++Q +++E+ RE
Sbjct: 777 DREKNQDKELEKGREKDQDKELEKGREKDR-DKEMEKAR---EKDQDKELEKG-RE---- 827
Query: 392 LKDWEYREREREKERQYEKEKEKERERKRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKR 451
KD + +E E+ +E+ +K +EK+R++ R K+ E+D D R++ R L EK R++
Sbjct: 828 -KDQD-KELEKGQEKDRDKVREKDRDKVRDKDRDKVREKDRDKVREK-DRDKLREKDREK 884
Query: 452 IREKEEDLADEV-REEEEIAVAKRRAEEEQLQ 482
IRE++ D E R++E++ ++ E+E+L+
Sbjct: 885 IRERDRDKGREKDRDKEQVKTREKDQEKERLK 916
>sp|Q75CK5|NST1_ASHGO Stress response protein NST1 OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NST1 PE=3
SV=2
Length = 1207
Score = 33.5 bits (75), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 24/91 (26%)
Query: 352 KREKEREIDRYEREAERERVRKEREQRRKIEEAEREYERCLKDWEYRER----------- 400
KR++ E R ++EAE +++ QR+K+EEA+R+ KD E R+R
Sbjct: 618 KRKQVEEEARLKQEAEAREMQRRENQRKKVEEAKRK-----KDLEMRKRLEEQRRREEEQ 672
Query: 401 --------EREKERQYEKEKEKERERKRKKE 423
E +++R E+++ +E +RKRK+E
Sbjct: 673 ERQRRMKEEIKRKRDQERKQREEEQRKRKQE 703
>sp|P46504|YLX8_CAEEL Uncharacterized protein F23F12.8 OS=Caenorhabditis elegans
GN=F23F12.8 PE=4 SV=2
Length = 980
Score = 33.1 bits (74), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 4/116 (3%)
Query: 366 AERERVRKEREQRRKIEEAEREYERCLKDWEYREREREKERQYEKEKEKERERKRKKEIL 425
+ ++ ER+Q+ K E+ E+E R K+ + RE ER ++ + E E ++ E R+ I
Sbjct: 302 VQHQKTVSERQQQEKFEKMEQERLRQEKEEKARELERRRKLE-ESETARQAELDRQATIY 360
Query: 426 YDEEEDEDDSRKRWRRSVLEEKRRKRIREKEEDLADE---VREEEEIAVAKRRAEE 478
++E + + R LEEK+R+ R ++E++A E +RE E + + ++R E
Sbjct: 361 AEQERMAMERNRELERIRLEEKKRENERVRQEEIAMEISKIRELERLQLERQRKNE 416
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.130 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 328,873,444
Number of Sequences: 539616
Number of extensions: 16600496
Number of successful extensions: 254998
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2194
Number of HSP's successfully gapped in prelim test: 5168
Number of HSP's that attempted gapping in prelim test: 108913
Number of HSP's gapped (non-prelim): 61372
length of query: 813
length of database: 191,569,459
effective HSP length: 126
effective length of query: 687
effective length of database: 123,577,843
effective search space: 84897978141
effective search space used: 84897978141
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 66 (30.0 bits)