Query 003520
Match_columns 813
No_of_seqs 510 out of 2752
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 00:59:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003520.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003520hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2253 U1 snRNP complex, subu 100.0 7.1E-68 1.5E-72 593.0 32.1 609 95-808 39-668 (668)
2 PF01480 PWI: PWI domain; Int 99.7 1.1E-18 2.4E-23 152.4 5.4 68 735-802 2-74 (77)
3 smart00311 PWI PWI, domain in 99.7 1.2E-17 2.6E-22 144.7 8.0 71 731-801 3-73 (74)
4 KOG4661 Hsp27-ERE-TATA-binding 99.7 1.2E-16 2.6E-21 176.6 15.8 81 94-174 403-483 (940)
5 KOG2146 Splicing coactivator S 99.7 1.5E-17 3.3E-22 171.6 2.9 91 719-809 27-120 (354)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 3.1E-14 6.7E-19 157.5 16.1 83 94-176 267-349 (352)
7 PLN03134 glycine-rich RNA-bind 99.6 1.9E-14 4.2E-19 140.5 11.4 81 95-175 33-113 (144)
8 TIGR01659 sex-lethal sex-letha 99.5 6.4E-13 1.4E-17 147.3 18.0 83 93-175 104-186 (346)
9 KOG0121 Nuclear cap-binding pr 99.5 4.9E-14 1.1E-18 131.1 7.3 83 94-176 34-116 (153)
10 PF00076 RRM_1: RNA recognitio 99.4 7E-13 1.5E-17 111.4 9.3 70 99-169 1-70 (70)
11 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 6E-13 1.3E-17 147.3 11.1 81 95-175 2-82 (352)
12 KOG0122 Translation initiation 99.4 1.9E-12 4.2E-17 132.4 13.2 83 94-176 187-269 (270)
13 KOG0146 RNA-binding protein ET 99.4 2.9E-13 6.3E-18 139.2 7.2 89 86-174 275-363 (371)
14 KOG0113 U1 small nuclear ribon 99.4 1.9E-12 4.1E-17 135.6 10.4 93 93-187 98-190 (335)
15 KOG0125 Ataxin 2-binding prote 99.3 9E-12 1.9E-16 131.9 14.1 82 93-176 93-174 (376)
16 KOG0149 Predicted RNA-binding 99.3 2.1E-12 4.6E-17 131.7 6.9 80 94-174 10-89 (247)
17 PLN03213 repressor of silencin 99.3 9E-12 1.9E-16 137.0 11.3 89 94-188 8-98 (759)
18 TIGR01645 half-pint poly-U bin 99.3 6.4E-12 1.4E-16 146.9 10.0 80 94-173 105-184 (612)
19 TIGR01645 half-pint poly-U bin 99.3 9.3E-12 2E-16 145.5 11.0 81 95-175 203-283 (612)
20 PF14259 RRM_6: RNA recognitio 99.3 1.5E-11 3.3E-16 104.3 9.2 70 99-169 1-70 (70)
21 PLN03120 nucleic acid binding 99.3 1.4E-11 3E-16 129.6 10.4 76 96-175 4-79 (260)
22 KOG0145 RNA-binding protein EL 99.3 2.7E-11 5.8E-16 124.6 12.2 81 95-175 277-357 (360)
23 TIGR01642 U2AF_lg U2 snRNP aux 99.3 4E-11 8.8E-16 139.4 14.4 82 94-175 293-374 (509)
24 KOG0126 Predicted RNA-binding 99.3 9E-13 1.9E-17 129.4 0.4 81 93-173 32-112 (219)
25 TIGR01659 sex-lethal sex-letha 99.2 1.9E-11 4.2E-16 135.5 10.3 82 95-176 192-275 (346)
26 TIGR01622 SF-CC1 splicing fact 99.2 3.7E-11 8.1E-16 137.9 11.1 80 96-175 186-265 (457)
27 smart00362 RRM_2 RNA recogniti 99.2 7.6E-11 1.6E-15 97.7 9.7 72 98-171 1-72 (72)
28 KOG4207 Predicted splicing fac 99.2 2.2E-11 4.7E-16 121.9 7.1 81 95-175 12-92 (256)
29 KOG0127 Nucleolar protein fibr 99.2 5.1E-11 1.1E-15 132.9 10.7 87 94-181 115-201 (678)
30 KOG0108 mRNA cleavage and poly 99.2 3E-11 6.5E-16 136.3 9.0 82 97-178 19-100 (435)
31 TIGR01628 PABP-1234 polyadenyl 99.2 8.2E-11 1.8E-15 138.8 12.3 85 95-180 284-368 (562)
32 KOG0107 Alternative splicing f 99.2 4.5E-11 9.8E-16 117.1 7.8 76 95-175 9-84 (195)
33 TIGR01628 PABP-1234 polyadenyl 99.2 7.7E-11 1.7E-15 139.1 10.8 78 98-175 2-79 (562)
34 KOG0148 Apoptosis-promoting RN 99.2 5.3E-11 1.1E-15 123.3 7.9 83 95-177 61-143 (321)
35 COG0724 RNA-binding proteins ( 99.2 1.1E-10 2.5E-15 120.7 10.2 80 96-175 115-194 (306)
36 KOG0117 Heterogeneous nuclear 99.2 1.3E-10 2.8E-15 127.4 10.7 83 94-176 81-164 (506)
37 PLN03121 nucleic acid binding 99.2 1.3E-10 2.8E-15 120.6 10.1 76 95-174 4-79 (243)
38 smart00360 RRM RNA recognition 99.1 1.5E-10 3.3E-15 95.4 8.7 71 101-171 1-71 (71)
39 TIGR01622 SF-CC1 splicing fact 99.1 1.5E-10 3.3E-15 132.9 11.4 82 93-175 86-167 (457)
40 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 9.9E-10 2.1E-14 127.5 18.0 79 93-176 272-351 (481)
41 TIGR01648 hnRNP-R-Q heterogene 99.1 1.3E-10 2.9E-15 135.6 10.6 79 95-174 57-136 (578)
42 KOG0145 RNA-binding protein EL 99.1 2.6E-10 5.7E-15 117.3 11.2 88 93-180 38-125 (360)
43 KOG0124 Polypyrimidine tract-b 99.1 3.6E-11 7.9E-16 128.2 4.6 79 95-173 112-190 (544)
44 KOG0111 Cyclophilin-type pepti 99.1 4.8E-11 1E-15 120.2 3.8 83 95-177 9-91 (298)
45 KOG0130 RNA-binding protein RB 99.1 1.5E-10 3.3E-15 108.8 6.9 80 95-174 71-150 (170)
46 KOG0131 Splicing factor 3b, su 99.1 1.3E-10 2.9E-15 114.5 5.9 80 95-174 8-87 (203)
47 cd00590 RRM RRM (RNA recogniti 99.1 1.1E-09 2.4E-14 91.2 10.1 74 98-172 1-74 (74)
48 KOG0415 Predicted peptidyl pro 99.0 3.8E-10 8.2E-15 120.4 6.8 86 93-178 236-321 (479)
49 KOG0148 Apoptosis-promoting RN 99.0 9.2E-10 2E-14 114.3 9.4 78 93-176 161-238 (321)
50 KOG0114 Predicted RNA-binding 99.0 1.9E-09 4.1E-14 97.4 10.0 82 95-179 17-98 (124)
51 KOG0144 RNA-binding protein CU 99.0 1.3E-09 2.9E-14 119.1 10.3 88 93-180 31-121 (510)
52 KOG0127 Nucleolar protein fibr 98.9 2.9E-09 6.2E-14 119.2 10.7 84 95-178 291-380 (678)
53 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.9 2.7E-09 5.9E-14 123.8 10.4 75 95-175 1-77 (481)
54 KOG0147 Transcriptional coacti 98.9 1.4E-09 3E-14 122.4 6.8 80 95-174 277-356 (549)
55 TIGR01648 hnRNP-R-Q heterogene 98.9 3.6E-09 7.7E-14 123.9 10.4 74 95-176 232-307 (578)
56 TIGR01642 U2AF_lg U2 snRNP aux 98.9 6.8E-09 1.5E-13 120.9 12.5 75 91-172 170-256 (509)
57 smart00361 RRM_1 RNA recogniti 98.9 5.6E-09 1.2E-13 89.4 8.4 61 110-170 2-69 (70)
58 KOG0124 Polypyrimidine tract-b 98.9 2.6E-09 5.7E-14 114.3 7.4 105 69-175 178-289 (544)
59 PF13893 RRM_5: RNA recognitio 98.9 1.1E-08 2.4E-13 83.4 8.8 56 113-173 1-56 (56)
60 KOG0105 Alternative splicing f 98.9 3.5E-09 7.7E-14 104.5 6.7 80 94-176 4-83 (241)
61 KOG0109 RNA-binding protein LA 98.9 2.2E-09 4.7E-14 112.5 5.5 71 97-175 3-73 (346)
62 KOG0144 RNA-binding protein CU 98.8 6.4E-09 1.4E-13 113.9 7.2 82 93-174 421-502 (510)
63 KOG4208 Nucleolar RNA-binding 98.8 1.9E-08 4.1E-13 101.4 8.1 83 94-176 47-130 (214)
64 KOG0226 RNA-binding proteins [ 98.7 8.1E-08 1.7E-12 99.4 12.0 82 93-174 187-268 (290)
65 KOG0117 Heterogeneous nuclear 98.7 1.9E-08 4E-13 110.8 7.8 75 94-176 257-331 (506)
66 KOG0131 Splicing factor 3b, su 98.7 1.8E-08 4E-13 99.6 6.0 81 95-175 95-176 (203)
67 KOG0146 RNA-binding protein ET 98.7 3.6E-08 7.9E-13 102.1 8.0 83 95-178 18-103 (371)
68 KOG0109 RNA-binding protein LA 98.6 2.5E-08 5.4E-13 104.7 5.2 76 93-176 75-150 (346)
69 KOG4212 RNA-binding protein hn 98.6 7.9E-08 1.7E-12 105.3 9.0 80 95-175 43-123 (608)
70 KOG1457 RNA binding protein (c 98.6 3E-07 6.6E-12 93.5 11.5 85 94-178 32-120 (284)
71 KOG0123 Polyadenylate-binding 98.6 9.6E-08 2.1E-12 107.0 8.7 75 99-176 79-153 (369)
72 KOG4206 Spliceosomal protein s 98.6 1.4E-07 3E-12 96.7 7.5 84 96-182 9-96 (221)
73 KOG0110 RNA-binding protein (R 98.5 1.2E-07 2.6E-12 109.7 6.9 92 94-186 611-702 (725)
74 KOG0132 RNA polymerase II C-te 98.5 2.2E-07 4.7E-12 108.1 7.7 75 96-176 421-495 (894)
75 KOG0110 RNA-binding protein (R 98.4 3.7E-07 7.9E-12 105.7 8.2 78 96-174 515-596 (725)
76 KOG0153 Predicted RNA-binding 98.4 4.4E-07 9.6E-12 97.6 8.2 78 92-175 224-302 (377)
77 KOG0151 Predicted splicing reg 98.4 6.9E-07 1.5E-11 103.0 9.4 84 93-176 171-257 (877)
78 KOG4212 RNA-binding protein hn 98.4 5.5E-07 1.2E-11 98.9 7.1 76 93-173 533-608 (608)
79 KOG0123 Polyadenylate-binding 98.4 7E-07 1.5E-11 100.1 7.9 77 97-179 2-78 (369)
80 KOG4205 RNA-binding protein mu 98.4 2.6E-07 5.7E-12 100.7 4.2 81 95-176 5-85 (311)
81 KOG1548 Transcription elongati 98.3 1.5E-06 3.4E-11 93.4 9.1 83 93-176 131-221 (382)
82 KOG4209 Splicing factor RNPS1, 98.3 1.1E-06 2.4E-11 92.5 6.1 80 93-173 98-177 (231)
83 KOG0116 RasGAP SH3 binding pro 98.2 4.6E-06 1E-10 94.2 10.6 76 95-171 287-362 (419)
84 KOG0533 RRM motif-containing p 98.2 3.6E-06 7.9E-11 88.6 8.8 81 94-175 81-161 (243)
85 KOG0120 Splicing factor U2AF, 98.2 2.5E-06 5.4E-11 97.6 6.7 84 93-176 286-369 (500)
86 KOG4454 RNA binding protein (R 98.1 1.2E-06 2.5E-11 89.1 2.5 79 95-175 8-86 (267)
87 KOG4205 RNA-binding protein mu 98.1 3.9E-06 8.4E-11 91.6 5.7 81 95-176 96-176 (311)
88 KOG0106 Alternative splicing f 98.0 6E-06 1.3E-10 85.4 4.3 72 97-176 2-73 (216)
89 KOG1924 RhoA GTPase effector D 98.0 2.9E-05 6.3E-10 90.8 10.3 16 169-184 724-739 (1102)
90 KOG4660 Protein Mei2, essentia 97.9 2.4E-05 5.2E-10 89.1 8.1 72 93-169 72-143 (549)
91 KOG2253 U1 snRNP complex, subu 97.8 0.00067 1.5E-08 79.0 17.1 33 572-605 515-547 (668)
92 PF04059 RRM_2: RNA recognitio 97.7 0.00021 4.5E-09 65.4 9.8 78 97-174 2-85 (97)
93 KOG1190 Polypyrimidine tract-b 97.7 0.00023 5E-09 78.4 11.2 76 96-176 297-373 (492)
94 KOG2416 Acinus (induces apopto 97.6 0.00037 8E-09 79.8 11.0 79 92-176 440-522 (718)
95 KOG1995 Conserved Zn-finger pr 97.5 0.0002 4.2E-09 78.2 7.4 82 95-176 65-154 (351)
96 KOG1457 RNA binding protein (c 97.5 0.00025 5.5E-09 72.7 7.5 67 94-164 208-274 (284)
97 KOG0147 Transcriptional coacti 97.5 6.7E-05 1.5E-09 85.4 3.3 85 93-178 176-260 (549)
98 KOG4849 mRNA cleavage factor I 97.4 0.00029 6.3E-09 76.1 6.5 80 93-172 77-158 (498)
99 KOG4849 mRNA cleavage factor I 97.2 0.0053 1.1E-07 66.6 13.7 77 99-187 348-425 (498)
100 PF11608 Limkain-b1: Limkain b 97.2 0.0013 2.9E-08 58.1 7.6 71 97-177 3-78 (90)
101 KOG4210 Nuclear localization s 97.1 0.00026 5.7E-09 77.0 2.5 81 95-176 183-264 (285)
102 KOG1456 Heterogeneous nuclear 96.9 0.019 4.2E-07 63.0 14.9 77 93-174 284-361 (494)
103 KOG4676 Splicing factor, argin 96.9 0.00022 4.8E-09 78.1 -0.2 65 95-164 150-214 (479)
104 KOG4307 RNA binding protein RB 96.9 0.013 2.8E-07 68.7 13.7 77 96-172 867-943 (944)
105 KOG3152 TBP-binding protein, a 96.9 0.00064 1.4E-08 71.2 3.0 89 95-183 73-174 (278)
106 KOG4206 Spliceosomal protein s 96.9 0.0045 9.8E-08 64.1 9.1 77 93-174 143-220 (221)
107 PF08777 RRM_3: RNA binding mo 96.9 0.0047 1E-07 57.5 8.5 85 97-187 2-93 (105)
108 KOG4211 Splicing factor hnRNP- 96.9 0.0022 4.9E-08 72.5 7.3 74 96-173 10-83 (510)
109 KOG2314 Translation initiation 96.8 0.0032 7E-08 72.0 8.3 77 95-172 57-140 (698)
110 KOG0106 Alternative splicing f 96.5 0.0018 4E-08 67.2 3.2 69 94-170 97-165 (216)
111 KOG1855 Predicted RNA-binding 96.3 0.0034 7.4E-08 69.9 4.3 85 86-170 221-318 (484)
112 COG5175 MOT2 Transcriptional r 96.3 0.0083 1.8E-07 64.9 6.9 88 96-185 114-210 (480)
113 KOG0129 Predicted RNA-binding 96.1 0.013 2.8E-07 67.0 7.1 65 93-157 367-432 (520)
114 PF08952 DUF1866: Domain of un 96.0 0.031 6.7E-07 54.7 8.5 71 94-173 25-104 (146)
115 KOG4211 Splicing factor hnRNP- 95.9 0.022 4.8E-07 64.7 8.2 75 95-171 102-177 (510)
116 KOG1190 Polypyrimidine tract-b 95.7 0.021 4.5E-07 63.5 6.5 79 94-176 412-491 (492)
117 PF05172 Nup35_RRM: Nup53/35/4 95.4 0.059 1.3E-06 49.8 7.4 79 96-176 6-92 (100)
118 KOG1548 Transcription elongati 95.3 0.044 9.6E-07 59.9 7.4 82 94-179 263-355 (382)
119 KOG4307 RNA binding protein RB 95.2 0.067 1.5E-06 62.9 8.7 78 94-172 432-510 (944)
120 KOG0128 RNA-binding protein SA 94.8 0.011 2.4E-07 70.9 1.3 79 96-175 736-814 (881)
121 KOG0120 Splicing factor U2AF, 94.7 0.079 1.7E-06 61.5 7.7 64 112-175 425-491 (500)
122 KOG1365 RNA-binding protein Fu 94.6 0.077 1.7E-06 58.6 6.9 76 96-172 280-358 (508)
123 KOG0128 RNA-binding protein SA 94.5 0.0046 9.9E-08 74.0 -2.9 76 95-170 666-741 (881)
124 KOG4676 Splicing factor, argin 94.0 0.1 2.2E-06 58.0 6.2 74 97-171 8-84 (479)
125 PF14605 Nup35_RRM_2: Nup53/35 94.0 0.13 2.7E-06 42.0 5.3 52 97-155 2-53 (53)
126 KOG0112 Large RNA-binding prot 93.6 0.08 1.7E-06 64.1 5.0 79 94-173 370-448 (975)
127 KOG0112 Large RNA-binding prot 93.6 0.065 1.4E-06 64.8 4.2 81 93-179 452-534 (975)
128 KOG0129 Predicted RNA-binding 93.4 0.19 4.2E-06 57.7 7.4 78 95-175 258-340 (520)
129 KOG2193 IGF-II mRNA-binding pr 93.4 0.1 2.2E-06 58.3 5.0 76 97-179 2-79 (584)
130 KOG0105 Alternative splicing f 93.2 0.4 8.8E-06 48.5 8.4 63 95-164 114-176 (241)
131 KOG4285 Mitotic phosphoprotein 92.8 2 4.4E-05 46.6 13.4 69 99-176 200-268 (350)
132 KOG0115 RNA-binding protein p5 92.2 0.14 2.9E-06 54.3 3.8 63 96-159 31-93 (275)
133 KOG1996 mRNA splicing factor [ 92.1 0.38 8.2E-06 51.8 6.9 63 112-174 302-365 (378)
134 KOG1456 Heterogeneous nuclear 92.0 0.42 9E-06 53.0 7.3 73 101-178 127-201 (494)
135 KOG1365 RNA-binding protein Fu 91.7 0.31 6.7E-06 54.1 5.9 78 96-187 161-242 (508)
136 PTZ00266 NIMA-related protein 90.2 2.9 6.3E-05 53.1 13.2 21 711-731 874-894 (1021)
137 PTZ00121 MAEBL; Provisional 88.8 15 0.00033 47.6 17.4 24 134-157 928-952 (2084)
138 PF15023 DUF4523: Protein of u 88.7 1.7 3.8E-05 42.5 7.6 74 93-174 83-160 (166)
139 KOG4574 RNA-binding protein (c 87.5 1.4 3.1E-05 53.4 7.5 76 96-177 298-375 (1007)
140 KOG2202 U2 snRNP splicing fact 86.9 0.36 7.9E-06 51.2 2.0 64 112-176 84-148 (260)
141 KOG2068 MOT2 transcription fac 86.7 0.3 6.5E-06 53.7 1.3 87 96-185 77-170 (327)
142 KOG2591 c-Mpl binding protein, 85.5 6.9 0.00015 45.8 11.3 70 94-170 173-246 (684)
143 PF10309 DUF2414: Protein of u 84.9 3.8 8.2E-05 34.7 6.7 55 96-158 5-62 (62)
144 KOG2891 Surface glycoprotein [ 84.9 34 0.00075 36.9 15.3 67 95-161 148-245 (445)
145 PF04847 Calcipressin: Calcipr 84.7 2.4 5.1E-05 43.6 6.6 61 110-176 9-71 (184)
146 PF08675 RNA_bind: RNA binding 84.0 3.3 7.1E-05 37.1 6.2 54 98-159 10-63 (87)
147 KOG4660 Protein Mei2, essentia 82.5 2.5 5.4E-05 49.3 6.3 66 120-185 413-484 (549)
148 KOG4661 Hsp27-ERE-TATA-binding 82.0 10 0.00022 44.4 10.8 32 270-301 549-580 (940)
149 KOG4210 Nuclear localization s 80.1 1.3 2.8E-05 48.5 2.9 82 95-176 87-168 (285)
150 PF03880 DbpA: DbpA RNA bindin 79.4 7.7 0.00017 33.6 6.9 59 106-173 11-74 (74)
151 PF03467 Smg4_UPF3: Smg-4/UPF3 79.0 2.6 5.6E-05 42.9 4.5 81 95-175 6-97 (176)
152 TIGR03687 pupylate_cterm ubiqu 78.9 2.9 6.2E-05 30.5 3.3 24 769-792 4-27 (33)
153 KOG2135 Proteins containing th 78.5 1.2 2.6E-05 50.9 2.0 74 96-176 372-446 (526)
154 PF07576 BRAP2: BRCA1-associat 75.7 20 0.00044 33.8 9.1 67 96-164 13-80 (110)
155 PF11517 Nab2: Nuclear abundan 72.5 18 0.0004 33.3 7.5 74 733-806 8-83 (107)
156 KOG0226 RNA-binding proteins [ 67.9 14 0.00029 39.7 6.5 73 94-167 94-169 (290)
157 KOG2318 Uncharacterized conser 65.2 23 0.0005 41.9 8.2 80 93-172 171-304 (650)
158 PF11767 SET_assoc: Histone ly 60.9 24 0.00052 30.3 5.7 55 107-170 11-65 (66)
159 KOG4364 Chromatin assembly fac 60.0 1.4E+02 0.0031 36.2 13.4 6 150-155 84-89 (811)
160 PF03276 Gag_spuma: Spumavirus 55.9 30 0.00066 40.8 7.1 41 114-155 295-337 (582)
161 KOG0804 Cytoplasmic Zn-finger 53.8 36 0.00079 39.2 7.2 66 96-164 74-141 (493)
162 COG5178 PRP8 U5 snRNP spliceos 49.2 15 0.00033 46.4 3.5 33 95-127 71-103 (2365)
163 PF11600 CAF-1_p150: Chromatin 47.2 3.6E+02 0.0078 28.3 15.7 10 470-479 163-172 (216)
164 KOG3702 Nuclear polyadenylated 46.6 23 0.00049 42.6 4.4 63 735-797 22-84 (681)
165 KOG3671 Actin regulatory prote 46.3 1.4E+02 0.0031 35.1 10.4 28 98-125 483-510 (569)
166 KOG4454 RNA binding protein (R 45.5 5.3 0.00011 41.8 -0.9 74 94-168 78-155 (267)
167 PF05639 Pup: Pup-like protein 44.6 7.7 0.00017 33.5 0.1 25 768-792 39-63 (69)
168 KOG1925 Rac1 GTPase effector F 44.0 69 0.0015 37.5 7.5 25 95-119 305-329 (817)
169 KOG4246 Predicted DNA-binding 37.0 16 0.00034 44.8 1.1 6 139-144 159-164 (1194)
170 COG5178 PRP8 U5 snRNP spliceos 34.5 35 0.00076 43.4 3.5 10 753-762 1030-1039(2365)
171 KOG4019 Calcineurin-mediated s 34.4 33 0.00072 35.1 2.8 75 96-176 10-90 (193)
172 KOG2135 Proteins containing th 33.4 46 0.00099 38.7 4.0 63 735-797 7-73 (526)
173 cd07354 HN_L-delphilin-R1_like 33.0 82 0.0018 28.1 4.6 48 742-790 9-59 (80)
174 PF13797 Post_transc_reg: Post 32.5 1E+02 0.0022 27.8 5.4 58 733-790 5-67 (87)
175 PF09707 Cas_Cas2CT1978: CRISP 31.8 63 0.0014 29.2 3.9 49 96-147 25-73 (86)
176 COG0724 RNA-binding proteins ( 31.7 45 0.00097 34.0 3.4 65 93-157 222-286 (306)
177 KOG3938 RGS-GAIP interacting p 31.2 40 0.00087 36.4 2.9 56 741-796 264-322 (334)
178 KOG4246 Predicted DNA-binding 29.9 23 0.00049 43.5 0.9 12 94-105 143-154 (1194)
179 KOG2295 C2H2 Zn-finger protein 29.7 9.4 0.0002 44.8 -2.1 71 95-165 230-300 (648)
180 PRK14950 DNA polymerase III su 27.8 1.9E+02 0.0041 35.0 8.3 12 161-172 496-507 (585)
181 KOG1984 Vesicle coat complex C 27.3 1.8E+02 0.0039 36.6 7.7 7 598-604 702-708 (1007)
182 PF02607 B12-binding_2: B12 bi 26.9 1.7E+02 0.0037 25.0 5.7 51 739-794 3-54 (79)
183 KOG2888 Putative RNA binding p 26.7 41 0.0009 37.3 2.1 19 167-185 162-180 (453)
184 KOG3671 Actin regulatory prote 26.4 3.5E+02 0.0075 32.1 9.3 6 121-126 479-484 (569)
185 KOG4410 5-formyltetrahydrofola 26.0 3.5E+02 0.0076 29.7 8.8 51 95-150 329-379 (396)
186 KOG1925 Rac1 GTPase effector F 25.6 1.8E+02 0.004 34.2 6.9 11 598-608 752-762 (817)
187 PF15473 PCNP: PEST, proteolyt 25.2 26 0.00057 34.5 0.3 18 572-589 88-105 (150)
188 KOG0162 Myosin class I heavy c 25.0 3.1E+02 0.0067 34.0 8.8 9 118-126 1070-1078(1106)
189 KOG0905 Phosphoinositide 3-kin 24.9 2.2E+02 0.0048 37.1 8.0 44 697-740 841-885 (1639)
190 PRK11558 putative ssRNA endonu 23.5 98 0.0021 28.7 3.6 50 96-148 27-76 (97)
191 KOG2193 IGF-II mRNA-binding pr 23.3 6.1 0.00013 44.8 -4.9 75 95-173 79-154 (584)
192 cd07347 harmonin_N_like N-term 22.6 2.6E+02 0.0056 24.9 5.9 60 738-797 5-64 (78)
193 KOG4008 rRNA processing protei 22.4 48 0.0011 35.2 1.6 33 95-127 39-71 (261)
194 KOG0260 RNA polymerase II, lar 22.4 4.5E+02 0.0097 34.5 9.8 8 13-20 1449-1456(1605)
195 KOG3702 Nuclear polyadenylated 20.3 3E+02 0.0065 33.6 7.6 72 97-169 512-583 (681)
196 TIGR01795 CM_mono_cladeE monof 20.3 3.2E+02 0.007 24.9 6.3 38 772-809 52-91 (94)
197 PF08926 DUF1908: Domain of un 20.1 2E+02 0.0044 31.4 5.7 28 771-798 190-224 (282)
No 1
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=100.00 E-value=7.1e-68 Score=593.00 Aligned_cols=609 Identities=31% Similarity=0.480 Sum_probs=364.1
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 174 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 174 (813)
+..+||||||.+.|....+..++..||.|.+|+++. ||||.|.++..+.+|+..|+-..++|..|.++++.
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~ 109 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDE 109 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccchh
Confidence 467899999999999999999999999999998754 99999999999999999999999999999998872
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhccccCCcccccccccccCCCCCCCc---------ccccCCCCCCCCCCCCCCCCcch
Q 003520 175 ATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPE---------NLKDNETGNKESHDPTNFGVVTE 245 (813)
Q Consensus 175 ~~kk~le~~k~kk~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~e---------~~~d~d~~~~~~~ev~~~~~~~e 245 (813)
.+ +. +.+.++.. .......|-|+.+ ....++.....++.+.+...++.
T Consensus 110 q~---~~--------n~~k~~~~------------~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is~s~~s~~ 166 (668)
T KOG2253|consen 110 QT---IE--------NADKEKSI------------ANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQISSSAASRR 166 (668)
T ss_pred hh---hc--------Cccccccc------------hhhhhcccCCchhHHHHHhhccccchhHHHHHHHHhccchhhhhh
Confidence 22 10 11110000 0111112222111 00011101122233333333443
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCcccccccchhhhcccccccccccccc
Q 003520 246 EDRKADQEALEKLTCMVEERLKTNPLPPPPPQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSDTKASD 325 (813)
Q Consensus 246 ed~~~D~~~~ekie~~~eer~~~~~~~~~~~~~~~~g~~~~~~~~~~~~r~~~~~~~~~~~~~~e~~~~~~~~~~~~~re 325 (813)
....+|...++.+...+++.... +..+.+..+ +.....++....+. +++.-. +
T Consensus 167 ~~~e~d~h~~e~~~~~~~s~~~~----~~~~~~~~~-~~e~~~~s~~~~s~--------------------tds~~~--~ 219 (668)
T KOG2253|consen 167 QIAEADDHCLELEKTETESNSAL----SKEAESKKS-PFEDTKDSKRSFSS--------------------TDSGSE--S 219 (668)
T ss_pred hhHHHHHHHHHHHHhhccccccc----CcccccccC-chhhhchhhhhhcc--------------------cCcccc--c
Confidence 44444544444444443332221 111111000 00000000000000 000000 0
Q ss_pred CCCCCCCCCCcccccc-ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHH
Q 003520 326 HDRPETSSPDRSRVHD-RRGRDKERDLKREKEREIDRYEREAERERVRKEREQRRKIEEAEREYERCLKDWEYREREREK 404 (813)
Q Consensus 326 ~dr~~~~~~~rsr~r~-rr~r~r~r~~~r~~~re~~r~~r~rerer~r~~R~~~~r~~e~E~~y~er~r~we~RER~r~~ 404 (813)
.++. . +|+++. .+++.+...+.|...+.+++.+.....+..+++|...++..++|.||+.||+.|+.||+.+++
T Consensus 220 d~~~---~--~s~~~n~~rd~sr~~~r~R~~~r~Re~~e~~ed~~~~re~r~~~~~~~~~E~Ayq~rl~~we~Rer~~~K 294 (668)
T KOG2253|consen 220 DSAE---V--NSSSLNYCRDRSRFDRRSRNDRRIRERLEKNEDSDEYREDRAATIKSVDPEKAYQTRLVFWEIREQTKEK 294 (668)
T ss_pred hhhh---h--cccccccchhhccchhhhHHHHHHHHHhhhccchHHHHHhhhhhhhccChhHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 011111 111111122222222222222211223456677888999999999999999999999999955
Q ss_pred HHHHHHHHHHHHH------HHHHHHhhhcccchhhhhhhhhhhhHHHHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHH
Q 003520 405 ERQYEKEKEKERE------RKRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKRIREKEEDLADEVREEEEIAVAKRRAEE 478 (813)
Q Consensus 405 ~re~ekerere~e------r~r~~e~~~d~dddr~d~rk~~r~~~~~~R~~~r~rE~e~D~~dr~~E~eE~~e~~~~~~e 478 (813)
.+++++.+++.+. .+++++|++||||+++| .+||++++|+.|++++.+|+|+|.+||.+|++|++++|++..+
T Consensus 295 e~eke~~ke~~r~~~~~ke~kr~k~~~ed~DD~rdd-~~y~r~s~l~~r~r~~~re~Ead~~dR~qeqee~~E~Kr~~~~ 373 (668)
T KOG2253|consen 295 EREKERLKEKSRQYKREKEAKRLKEFLEDYDDERDD-PKYYRGSALQERLRDREREAEADRRDRHQEQEELEEIKRRHSE 373 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhcchhhhh-HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhh
Confidence 5554444444432 35788999999999877 6999999999999999999999999999999999999999877
Q ss_pred HHHHHHhHHHhhhccccccCCCcc----ccccccccCCcccccCCCCCccccCCCCCCCCCCCCCCCCCCCccccccccc
Q 003520 479 EQLQQQQRDALKLLSDNAVNGSLA----EESAVESKGMDVEHDYHDDSIRENHMAGDPSSQNGNGDESTNVPIAASDMRQ 554 (813)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 554 (813)
+..+.....+...+.+......+. ....++.........+.+.+++..|+.... .+..+-++ ..+-....
T Consensus 374 ~~~~~~~~e~~r~~~~~~~~~~~~~~~a~~ke~e~~~~~~~~q~~~e~a~~~~~~~ee--e~~s~r~~----~~~d~~~~ 447 (668)
T KOG2253|consen 374 EEAEDPSAEEERNMEEEEALDEEEDDEAVRKEPEERDLEESHQRLGESANQEHSNDEE--EIKSQRDD----YKPDENDH 447 (668)
T ss_pred hcccccchHHHHHHhhhhhhcchhhHHHHhhCcccccCccccchHHhhhhhccccchh--hcccchhh----hhhhhhhh
Confidence 654443333333333222222111 112222222222333444444444421110 00000000 00000112
Q ss_pred CCCCCccccCCCcCCCCCccccCCcCCCCCCcchhcccCCCCcccCCCChHHHhhhcCCCCCCCCCchHHHHHHHHHhhc
Q 003520 555 SGNVPARKLGFGLVGSGKRTAVPSVFHVEDDDDADKDKKMRPLVPIDYSTEELQAAQPHVSGANPPNLAAAAEFAKRISN 634 (813)
Q Consensus 555 ~~~~~~~k~~~~~~~~~kr~~v~~vf~~~dde~~~~~~~kr~Lvpl~y~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (813)
-..+|...+.+|+++++.+..+..+|-.-+...++....+...+||.|+.....+ .|+.++.+..++. -+-.
T Consensus 448 i~~~ps~~~~s~~~~~n~~~~~~~~~~~~~e~~~~es~n~~~n~p~~~~~~~q~~-----~g~sa~~~~i~~k---k~~~ 519 (668)
T KOG2253|consen 448 ISHAPSASLASGLVDANDRDSSPRGFKERHEREDDESLNKKINRPILASIQNQDE-----IGPSASPIPIAKK---KLPE 519 (668)
T ss_pred hhcCchhhhhhhccCCCCCCcccccccccccCcchhhhccccccccccccccccc-----ccCCCCccccccc---cCCC
Confidence 3456777888899988888889988876544444566667889999987733222 2222222111111 0111
Q ss_pred cCcchhhchHHHHhhhhhccccchhhccccccccchhhh-hhhhhhcccccccccccccccCchhhhhhHHHhhhhcCCC
Q 003520 635 VNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRD-EHKEKILDRDRDREHGLDKVKTPDNKKLLDAKQLIDMIPK 713 (813)
Q Consensus 635 ~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ip~ 713 (813)
|+. .+.+ .++|.+-..+ ++.+.--++.+++.|+.. +.+ -|..++++||.+||+
T Consensus 520 ~~v--------------------~~~~--~d~Dk~v~~~kk~vp~dyd~n~~~~~~~~---~nd-eK~~~~ksLI~tIP~ 573 (668)
T KOG2253|consen 520 TGV--------------------FRED--DDEDKNVHEKKKLVPLDYDRNQARAHSGE---SND-EKRKRIKSLIETIPT 573 (668)
T ss_pred ccc--------------------cccc--CCcccccchhhhcccccCChhhcccccCC---cch-hHHHHHHhhcccCCc
Confidence 100 0000 1122111111 222222222233333332 223 233479999999999
Q ss_pred CccchhcccccccccchhhHhhhhhhhHHHHHHhhcCCchhHHHHHHHHhhhcCCCHHHHHHHHHHhhhHHHHHHHHHHH
Q 003520 714 TKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMW 793 (813)
Q Consensus 714 ~k~~lf~~~i~w~~~~~~~~~~~l~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~ld~~a~~fv~~lw 793 (813)
+|++||+|+|+|+.||..+|+++|+|||+|||+||||++|++||||||++|+.|.+||+||.+|.+|||++|++||+|||
T Consensus 574 ~keeLf~~pidw~~ld~~lm~~rirpwV~KKIiEflGeeE~tLVdFI~s~i~~h~~~q~iL~dl~~ilDEdAE~FV~KmW 653 (668)
T KOG2253|consen 574 EKEELFAYPIDWDELDSILMNERIRPWVNKKIIEFLGEEEDTLVDFICSNIRQHSSPQQILDDLAMILDEDAEVFVVKMW 653 (668)
T ss_pred chHHHhhCcccHHHHhhHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhccc
Q 003520 794 RMLIFEIKKVETGLA 808 (813)
Q Consensus 794 rllife~~~~~~g~~ 808 (813)
||||||+.+++.||+
T Consensus 654 RlLiyel~ar~~g~~ 668 (668)
T KOG2253|consen 654 RLLIYELGARKLGLT 668 (668)
T ss_pred HHHHHHhhhhhccCC
Confidence 999999999999985
No 2
>PF01480 PWI: PWI domain; InterPro: IPR002483 The PWI domain, named after a highly conserved PWI tri-peptide located within its N-terminal region, is a ~80 amino acid module, which is found either at the N terminus or at the C terminus of eukaryotic proteins involved in pre-mRNA processing []. It is generally found in association with other domains such as RRM and RS. The PWI domain is a RNA/DNA-binding domain that has an equal preference for single- and double-stranded nucleic acids and is likely to have multiple important functions in pre-mRNA processing []. Proteins containing this domain include the SR-related nuclear matrix protein of 160kDa (SRm160) splicing and 3'-end cleavage-stimulatory factor, and the mammalian splicing factor PRP3. The PWI domain is a soluble, globular and independently folded domain which consists of a four-helix bundle, with structured N- and C-terminal elements [].; GO: 0006397 mRNA processing; PDB: 1MP1_A 1X4Q_A.
Probab=99.74 E-value=1.1e-18 Score=152.38 Aligned_cols=68 Identities=46% Similarity=0.808 Sum_probs=61.1
Q ss_pred hhhhhhHHHHHHhhcCCchhHHHHHHHHhhhcCC-----CHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 003520 735 ERMRPWISKKITEFLGEEETTLVDYIVSSTQDHV-----KASQMLELLQTILDDEAEMFVLKMWRMLIFEIKK 802 (813)
Q Consensus 735 ~~l~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~-----~p~~l~~~l~~~ld~~a~~fv~~lwrllife~~~ 802 (813)
++|||||.+||+||||++|++||+||+++|..+. +|+.|+++|++||+++|..||.+||+|||+.+..
T Consensus 2 ~~lk~WI~~kl~e~lG~edd~lvdyI~~~l~~~~~~~~~~~~~l~~~L~~fL~~~a~~Fv~~Lw~~l~~~q~~ 74 (77)
T PF01480_consen 2 EKLKPWISKKLEEILGFEDDVLVDYIVALLKSHKSSNEPDPKELQEQLEDFLDEEAEEFVDELWRLLISAQSS 74 (77)
T ss_dssp HHHHHHHHHHHHHHHSS--CHHHHHHHHHCCTT--SSS--HHHHHHHHTTTTGHHCHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 5799999999999999999999999999999887 9999999999999999999999999999988654
No 3
>smart00311 PWI PWI, domain in splicing factors.
Probab=99.72 E-value=1.2e-17 Score=144.74 Aligned_cols=71 Identities=42% Similarity=0.718 Sum_probs=67.9
Q ss_pred hhHhhhhhhhHHHHHHhhcCCchhHHHHHHHHhhhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 003520 731 HELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIK 801 (813)
Q Consensus 731 ~~~~~~l~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~ld~~a~~fv~~lwrllife~~ 801 (813)
.+..++|+|||+++|++|||++|++||+||+++|++|.+|+.++.+|..+++.+|+.||.+||+||||++.
T Consensus 3 kv~~~~lk~WI~~kv~e~LG~~d~~vvd~i~~~l~~~~~~~~l~~~L~~~~f~da~~Fv~~Lw~~l~~~~~ 73 (74)
T smart00311 3 KLKLDEIKPWITKKVIEFLGFEEDTLVEFILSQIRQHKGPQAKLLQINLTGFEDAEEFVDKLWRLLIFELK 73 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCChHHHHHHHHhhcchhHHHHHHHHHHHHHHhhc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999875
No 4
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.71 E-value=1.2e-16 Score=176.62 Aligned_cols=81 Identities=11% Similarity=0.256 Sum_probs=75.5
Q ss_pred CCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003520 94 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 173 (813)
Q Consensus 94 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 173 (813)
..+++|||.+|+..+...+|+.||++||.|+..+|+++..+...+|||||++.+..+|.+||.+||.++|+|+.|.|.-+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34789999999999999999999999999999999999777778899999999999999999999999999999999765
Q ss_pred c
Q 003520 174 Q 174 (813)
Q Consensus 174 ~ 174 (813)
.
T Consensus 483 K 483 (940)
T KOG4661|consen 483 K 483 (940)
T ss_pred c
Confidence 4
No 5
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=99.67 E-value=1.5e-17 Score=171.56 Aligned_cols=91 Identities=23% Similarity=0.476 Sum_probs=76.2
Q ss_pred hcccccccccchhhHhhhhhhhHHHHHHhhcCCchhHHHHHHHHhhhc--CCCHHHHHHHHHHhhh-HHHHHHHHHHHHH
Q 003520 719 FSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQD--HVKASQMLELLQTILD-DEAEMFVLKMWRM 795 (813)
Q Consensus 719 f~~~i~w~~~~~~~~~~~l~pwi~kki~e~lG~ee~~lv~~i~~~l~~--~~~p~~l~~~l~~~ld-~~a~~fv~~lwrl 795 (813)
|.-+++-.+-...+-.+.|+|||+++|+|+||+||++||+||+++|.+ ..+|+.|+++|++||+ .+|..||..||-|
T Consensus 27 F~~~lekkVDmsKvnleVlkPWItkrvneilgfEDdVViefvynqLee~k~ldpkkmQiNlTGFLngrnAreFmgeLW~L 106 (354)
T KOG2146|consen 27 FPACLEKKVDMSKVNLEVLKPWITKRVNEILGFEDDVVIEFVYNQLEEAKNLDPKKMQINLTGFLNGRNAREFMGELWSL 106 (354)
T ss_pred cHHHHhhhcchhhcchhhhhHHHHHHHHHhhccccchhHHHHHHHHhhhcCCCchheeeeeehhcccccHHHHHHHHHHH
Confidence 444444333334445678899999999999999999999999999975 6799999999999999 9999999999999
Q ss_pred HHHHHHhhhhcccc
Q 003520 796 LIFEIKKVETGLAL 809 (813)
Q Consensus 796 life~~~~~~g~~~ 809 (813)
||-+.-+..+||.-
T Consensus 107 liS~a~~s~~giP~ 120 (354)
T KOG2146|consen 107 LISEASQSQYGIPA 120 (354)
T ss_pred HHhhccccccCCch
Confidence 99877777777753
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.57 E-value=3.1e-14 Score=157.51 Aligned_cols=83 Identities=17% Similarity=0.306 Sum_probs=78.6
Q ss_pred CCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003520 94 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 173 (813)
Q Consensus 94 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 173 (813)
..+.+|||+|||+.+++++|..+|++||.|.+++|++++.||.++|||||+|.+.++|.+||..|||..|+|+.|.|.|.
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 34568999999999999999999999999999999999889999999999999999999999999999999999999997
Q ss_pred chh
Q 003520 174 QAT 176 (813)
Q Consensus 174 ~~~ 176 (813)
...
T Consensus 347 ~~~ 349 (352)
T TIGR01661 347 TNK 349 (352)
T ss_pred cCC
Confidence 654
No 7
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.56 E-value=1.9e-14 Score=140.53 Aligned_cols=81 Identities=19% Similarity=0.342 Sum_probs=77.9
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 174 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 174 (813)
..++|||+|||+.+++.+|+.+|..||.|.+|.|+.++.+|+++|||||+|.+.++|..||..|||..|+|+.|.|+|+.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred h
Q 003520 175 A 175 (813)
Q Consensus 175 ~ 175 (813)
.
T Consensus 113 ~ 113 (144)
T PLN03134 113 D 113 (144)
T ss_pred c
Confidence 4
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.49 E-value=6.4e-13 Score=147.26 Aligned_cols=83 Identities=16% Similarity=0.316 Sum_probs=79.0
Q ss_pred CCCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003520 93 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 172 (813)
Q Consensus 93 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 172 (813)
....++|||+|||+++++.+|+.+|..||.|..|+|+.++.+|+++|||||+|.+.++|..||..|||..|.++.|.|.|
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ech
Q 003520 173 DQA 175 (813)
Q Consensus 173 a~~ 175 (813)
+..
T Consensus 184 a~p 186 (346)
T TIGR01659 184 ARP 186 (346)
T ss_pred ccc
Confidence 754
No 9
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=4.9e-14 Score=131.09 Aligned_cols=83 Identities=22% Similarity=0.391 Sum_probs=79.4
Q ss_pred CCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003520 94 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 173 (813)
Q Consensus 94 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 173 (813)
..++|||||||++.+++++|.+||++||.|..|.+-.|+.+-.++|||||+|.+.++|..||+.|||+.++.+.|.|+|+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chh
Q 003520 174 QAT 176 (813)
Q Consensus 174 ~~~ 176 (813)
..-
T Consensus 114 ~GF 116 (153)
T KOG0121|consen 114 AGF 116 (153)
T ss_pred ccc
Confidence 763
No 10
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.42 E-value=7e-13 Score=111.43 Aligned_cols=70 Identities=33% Similarity=0.571 Sum_probs=67.6
Q ss_pred EEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003520 99 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 169 (813)
Q Consensus 99 LfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~ 169 (813)
|||+|||+.+++.+|+.+|+.||.|..+.+..+ .+|..+|||||+|.+.++|..|+..|||..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 6899999999999999999999999999999999985
No 11
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.42 E-value=6e-13 Score=147.25 Aligned_cols=81 Identities=19% Similarity=0.355 Sum_probs=77.8
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 174 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 174 (813)
+.++|||+|||+.+++.+|+.+|+.||.|..|+|+.++.+|+++|||||+|.+.++|..||..|||..|.|+.|.|.|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999998999999999999999999999999999999999999999985
Q ss_pred h
Q 003520 175 A 175 (813)
Q Consensus 175 ~ 175 (813)
.
T Consensus 82 ~ 82 (352)
T TIGR01661 82 P 82 (352)
T ss_pred c
Confidence 4
No 12
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1.9e-12 Score=132.38 Aligned_cols=83 Identities=23% Similarity=0.342 Sum_probs=79.6
Q ss_pred CCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003520 94 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 173 (813)
Q Consensus 94 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 173 (813)
...++|-|.||+.++++.+|..||.+||.|.++.|.+|+.||.++|||||+|.+.++|.+||..|||+-++.-.|.|.|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chh
Q 003520 174 QAT 176 (813)
Q Consensus 174 ~~~ 176 (813)
.+.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 753
No 13
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=2.9e-13 Score=139.24 Aligned_cols=89 Identities=17% Similarity=0.295 Sum_probs=82.0
Q ss_pred CCCCCCCCCCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC
Q 003520 86 LPTVTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 165 (813)
Q Consensus 86 ~p~~~~~~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~G 165 (813)
+++.....+.+|+|||-.||...++.+|.++|-.||.|++.++..|+.|+.++|||||.|.++.+|+.||..|||+.|+-
T Consensus 275 ~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGM 354 (371)
T KOG0146|consen 275 LPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGM 354 (371)
T ss_pred hhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhh
Confidence 44445557789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeec
Q 003520 166 QELMLKVDQ 174 (813)
Q Consensus 166 r~L~V~~a~ 174 (813)
+.|+|.+-.
T Consensus 355 KRLKVQLKR 363 (371)
T KOG0146|consen 355 KRLKVQLKR 363 (371)
T ss_pred hhhhhhhcC
Confidence 999987543
No 14
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.9e-12 Score=135.57 Aligned_cols=93 Identities=16% Similarity=0.400 Sum_probs=84.1
Q ss_pred CCCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003520 93 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 172 (813)
Q Consensus 93 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 172 (813)
..+.+||||+-|++.+++..|+..|..||.|..+.||++..||+++|||||+|++..+...|....+|..|+|+.|.|++
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred echhHHHHHHHHHhh
Q 003520 173 DQATREYLERYVDKK 187 (813)
Q Consensus 173 a~~~kk~le~~k~kk 187 (813)
.... .+..|...+
T Consensus 178 ERgR--TvkgW~PRR 190 (335)
T KOG0113|consen 178 ERGR--TVKGWLPRR 190 (335)
T ss_pred cccc--ccccccccc
Confidence 6543 344455444
No 15
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=9e-12 Score=131.92 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=76.4
Q ss_pred CCCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003520 93 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 172 (813)
Q Consensus 93 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 172 (813)
......|+|.|||+...+.+|+.+|.+||.|.+|.||.+ ...+||||||+|+++++|.+|-..|||..|.||+|.|+.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 345789999999999999999999999999999999997 567899999999999999999999999999999999998
Q ss_pred echh
Q 003520 173 DQAT 176 (813)
Q Consensus 173 a~~~ 176 (813)
+...
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 8765
No 16
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=2.1e-12 Score=131.70 Aligned_cols=80 Identities=24% Similarity=0.338 Sum_probs=74.2
Q ss_pred CCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003520 94 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 173 (813)
Q Consensus 94 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 173 (813)
...++||||+|+|.+..+.|+.+|..||.|+...||.|+.+|+++|||||+|.+.++|.+|+.- -.-.|+||+-.+++|
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 3468999999999999999999999999999999999999999999999999999999999986 557899999888876
Q ss_pred c
Q 003520 174 Q 174 (813)
Q Consensus 174 ~ 174 (813)
-
T Consensus 89 ~ 89 (247)
T KOG0149|consen 89 S 89 (247)
T ss_pred h
Confidence 3
No 17
>PLN03213 repressor of silencing 3; Provisional
Probab=99.30 E-value=9e-12 Score=136.97 Aligned_cols=89 Identities=19% Similarity=0.350 Sum_probs=79.0
Q ss_pred CCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCH--HHHHHHHHHhCCceeCCeEEEEE
Q 003520 94 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESA--EGVLRALRLLNKFNIDGQELMLK 171 (813)
Q Consensus 94 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~--e~A~~Al~~Lng~~i~Gr~L~V~ 171 (813)
....+||||||++.+++++|..+|+.||.|..|.|++ .+| +|||||+|.+. .++.+||..|||..++|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 3468999999999999999999999999999999994 577 89999999987 78999999999999999999998
Q ss_pred eechhHHHHHHHHHhhh
Q 003520 172 VDQATREYLERYVDKKT 188 (813)
Q Consensus 172 ~a~~~kk~le~~k~kk~ 188 (813)
-| ...||..++..+.
T Consensus 84 KA--KP~YLeRLkrERe 98 (759)
T PLN03213 84 KA--KEHYLARLKREWE 98 (759)
T ss_pred ec--cHHHHHHHHHHHH
Confidence 66 4568888876553
No 18
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.29 E-value=6.4e-12 Score=146.86 Aligned_cols=80 Identities=28% Similarity=0.414 Sum_probs=76.3
Q ss_pred CCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003520 94 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 173 (813)
Q Consensus 94 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 173 (813)
...++||||||++.+++++|+.+|..||.|.+|.|+.++.+|+++|||||+|.+.++|.+||..|||..|+|+.|.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999743
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.29 E-value=9.3e-12 Score=145.53 Aligned_cols=81 Identities=23% Similarity=0.420 Sum_probs=77.8
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 174 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 174 (813)
..++|||+||++.+++++|+.+|+.||.|.+|+|++++.+|+++|||||+|.+.++|..||..|||+.|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 46799999999999999999999999999999999998899999999999999999999999999999999999999887
Q ss_pred h
Q 003520 175 A 175 (813)
Q Consensus 175 ~ 175 (813)
.
T Consensus 283 ~ 283 (612)
T TIGR01645 283 T 283 (612)
T ss_pred C
Confidence 4
No 20
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.28 E-value=1.5e-11 Score=104.29 Aligned_cols=70 Identities=33% Similarity=0.575 Sum_probs=64.9
Q ss_pred EEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003520 99 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 169 (813)
Q Consensus 99 LfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~ 169 (813)
|||+|||++++.++|..+|+.||.|..+.+..++. |.++|||||+|.+.++|.+|+..++|..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999865 99999999999999999999999999999999874
No 21
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.27 E-value=1.4e-11 Score=129.57 Aligned_cols=76 Identities=14% Similarity=0.189 Sum_probs=70.1
Q ss_pred CceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeech
Q 003520 96 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 175 (813)
Q Consensus 96 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~ 175 (813)
.++|||||||+.+++.+|+.+|+.||.|.+|.|+.+. .++|||||+|.++++|..||. |||..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~---~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN---ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC---CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 5799999999999999999999999999999998874 356999999999999999995 899999999999988654
No 22
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=2.7e-11 Score=124.56 Aligned_cols=81 Identities=20% Similarity=0.318 Sum_probs=77.5
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 174 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 174 (813)
.+..|||-||.+++.+.-|.++|+.||.|..++|++|..|.+++|||||++.+.++|..||..|||+.++++.|.|.|-.
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 47899999999999999999999999999999999999889999999999999999999999999999999999999864
Q ss_pred h
Q 003520 175 A 175 (813)
Q Consensus 175 ~ 175 (813)
.
T Consensus 357 n 357 (360)
T KOG0145|consen 357 N 357 (360)
T ss_pred C
Confidence 3
No 23
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.26 E-value=4e-11 Score=139.41 Aligned_cols=82 Identities=20% Similarity=0.399 Sum_probs=78.0
Q ss_pred CCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003520 94 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 173 (813)
Q Consensus 94 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 173 (813)
...++|||||||+.+++++|..+|..||.|..+.|+.+..+|.++|||||+|.+...|..||..|||..|+|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred ch
Q 003520 174 QA 175 (813)
Q Consensus 174 ~~ 175 (813)
..
T Consensus 373 ~~ 374 (509)
T TIGR01642 373 CV 374 (509)
T ss_pred cc
Confidence 54
No 24
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=9e-13 Score=129.36 Aligned_cols=81 Identities=21% Similarity=0.329 Sum_probs=76.9
Q ss_pred CCCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003520 93 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 172 (813)
Q Consensus 93 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 172 (813)
...+.-|||||||+..|+.+|..+|+.||.|+.|.+++|..||+++||||+.|++..+..-|+..|||..|.||.|+|+-
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred e
Q 003520 173 D 173 (813)
Q Consensus 173 a 173 (813)
.
T Consensus 112 v 112 (219)
T KOG0126|consen 112 V 112 (219)
T ss_pred c
Confidence 3
No 25
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.25 E-value=1.9e-11 Score=135.53 Aligned_cols=82 Identities=23% Similarity=0.387 Sum_probs=76.4
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEe
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLKV 172 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~G--r~L~V~~ 172 (813)
..++|||+|||+.+++++|+++|++||.|..|.|+.+..+|+++|||||+|.+.++|..||..||+..|.| +.|.|.|
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 36789999999999999999999999999999999998899999999999999999999999999999876 7889988
Q ss_pred echh
Q 003520 173 DQAT 176 (813)
Q Consensus 173 a~~~ 176 (813)
+...
T Consensus 272 a~~~ 275 (346)
T TIGR01659 272 AEEH 275 (346)
T ss_pred CCcc
Confidence 7653
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.22 E-value=3.7e-11 Score=137.91 Aligned_cols=80 Identities=26% Similarity=0.489 Sum_probs=77.2
Q ss_pred CceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeech
Q 003520 96 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 175 (813)
Q Consensus 96 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~ 175 (813)
.++|||+|||+.+++.+|..+|+.||.|..|.++.++.+|+++|||||+|.+.++|..||..|||+.|.|+.|.|.|+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 68999999999999999999999999999999999988899999999999999999999999999999999999999763
No 27
>smart00362 RRM_2 RNA recognition motif.
Probab=99.21 E-value=7.6e-11 Score=97.70 Aligned_cols=72 Identities=29% Similarity=0.537 Sum_probs=67.9
Q ss_pred eEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003520 98 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 171 (813)
Q Consensus 98 tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~ 171 (813)
+|||+|||..++..+|..+|..||.|..+.+..++ |.+.|||||+|.+...|..|+..|+|..|.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998875 8889999999999999999999999999999998873
No 28
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.21 E-value=2.2e-11 Score=121.85 Aligned_cols=81 Identities=20% Similarity=0.276 Sum_probs=77.6
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 174 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 174 (813)
...+|-|-||.+.++.++|+.+|.+||.|..|.|.+|+.|+.++|||||-|.+..+|+.|+.+|+|.+|+|+.|.|.+|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred h
Q 003520 175 A 175 (813)
Q Consensus 175 ~ 175 (813)
.
T Consensus 92 y 92 (256)
T KOG4207|consen 92 Y 92 (256)
T ss_pred c
Confidence 4
No 29
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=5.1e-11 Score=132.93 Aligned_cols=87 Identities=18% Similarity=0.310 Sum_probs=80.5
Q ss_pred CCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003520 94 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 173 (813)
Q Consensus 94 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 173 (813)
.+...|+|.||||.|...+|..+|+.||.|..+.|++. ..|+.+|||||.|....+|..||..|||..|+|++|.|+||
T Consensus 115 ~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k-~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWA 193 (678)
T KOG0127|consen 115 LPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRK-KDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWA 193 (678)
T ss_pred CccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccC-CCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeee
Confidence 34789999999999999999999999999999999977 58888899999999999999999999999999999999999
Q ss_pred chhHHHHH
Q 003520 174 QATREYLE 181 (813)
Q Consensus 174 ~~~kk~le 181 (813)
...-.|-.
T Consensus 194 V~Kd~ye~ 201 (678)
T KOG0127|consen 194 VDKDTYED 201 (678)
T ss_pred cccccccc
Confidence 98766644
No 30
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.20 E-value=3e-11 Score=136.28 Aligned_cols=82 Identities=33% Similarity=0.594 Sum_probs=79.5
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeechh
Q 003520 97 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 176 (813)
Q Consensus 97 ~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~~ 176 (813)
+.|||||||+.++++.|..+|+..|.|.+++++.|+.||+++|||||+|.+.+.|..|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred HH
Q 003520 177 RE 178 (813)
Q Consensus 177 kk 178 (813)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 31
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.19 E-value=8.2e-11 Score=138.85 Aligned_cols=85 Identities=22% Similarity=0.387 Sum_probs=79.6
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 174 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 174 (813)
..++|||+||++.+++++|+.+|+.||.|.+|+++.+ .+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 4678999999999999999999999999999999999 699999999999999999999999999999999999999998
Q ss_pred hhHHHH
Q 003520 175 ATREYL 180 (813)
Q Consensus 175 ~~kk~l 180 (813)
......
T Consensus 363 ~k~~~~ 368 (562)
T TIGR01628 363 RKEQRR 368 (562)
T ss_pred CcHHHH
Confidence 765433
No 32
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=4.5e-11 Score=117.11 Aligned_cols=76 Identities=29% Similarity=0.455 Sum_probs=70.3
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 174 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 174 (813)
..+.||||||+..++..+|..+|..||.|.+|-|... +.|||||+|+++.+|..|+..|+|..|.|..|.|.++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 3789999999999999999999999999999888664 46999999999999999999999999999999998875
Q ss_pred h
Q 003520 175 A 175 (813)
Q Consensus 175 ~ 175 (813)
.
T Consensus 84 G 84 (195)
T KOG0107|consen 84 G 84 (195)
T ss_pred C
Confidence 4
No 33
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.17 E-value=7.7e-11 Score=139.06 Aligned_cols=78 Identities=22% Similarity=0.400 Sum_probs=75.2
Q ss_pred eEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeech
Q 003520 98 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 175 (813)
Q Consensus 98 tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~ 175 (813)
+|||||||+++|+.+|..+|+.||.|.+|+|+++..|++++|||||+|.+.++|.+||..||+..|.|+.|.|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 799999999999999999999999999999999988999999999999999999999999999999999999998753
No 34
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=5.3e-11 Score=123.35 Aligned_cols=83 Identities=20% Similarity=0.347 Sum_probs=79.3
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 174 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 174 (813)
...-||||.|...++.+.|++.|.+||.|..++|++|..|+|++|||||.|-+.++|++||..|||.-|++|.|+.+|+.
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhH
Q 003520 175 ATR 177 (813)
Q Consensus 175 ~~k 177 (813)
.+.
T Consensus 141 RKp 143 (321)
T KOG0148|consen 141 RKP 143 (321)
T ss_pred cCc
Confidence 653
No 35
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.16 E-value=1.1e-10 Score=120.67 Aligned_cols=80 Identities=26% Similarity=0.457 Sum_probs=77.1
Q ss_pred CceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeech
Q 003520 96 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 175 (813)
Q Consensus 96 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~ 175 (813)
.++|||||||+.+++++|..+|..||.|..+.++.++.+|.++|||||+|.+.++|..|+..|+|..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999988999999999999999999999999999999999999998654
No 36
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=1.3e-10 Score=127.40 Aligned_cols=83 Identities=25% Similarity=0.414 Sum_probs=78.7
Q ss_pred CCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEe
Q 003520 94 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLKV 172 (813)
Q Consensus 94 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~-Gr~L~V~~ 172 (813)
+.+|-||||.||.++.+++|.-||.+.|.|-.++++.|+.+|.++|||||+|++.+.|+.||..||+++|. |+.|.|.+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 35899999999999999999999999999999999999999999999999999999999999999999997 99999998
Q ss_pred echh
Q 003520 173 DQAT 176 (813)
Q Consensus 173 a~~~ 176 (813)
+...
T Consensus 161 Svan 164 (506)
T KOG0117|consen 161 SVAN 164 (506)
T ss_pred eeec
Confidence 7643
No 37
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.15 E-value=1.3e-10 Score=120.57 Aligned_cols=76 Identities=17% Similarity=0.195 Sum_probs=69.2
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 174 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 174 (813)
.+.||||+||++.+|+.+|+.||+.||.|..|.|+.+ +...|||||+|.++.+|..||. |||..|.++.|.|.-..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4689999999999999999999999999999999987 4556899999999999999995 89999999999987543
No 38
>smart00360 RRM RNA recognition motif.
Probab=99.15 E-value=1.5e-10 Score=95.40 Aligned_cols=71 Identities=32% Similarity=0.546 Sum_probs=67.2
Q ss_pred EccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003520 101 VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 171 (813)
Q Consensus 101 VgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~ 171 (813)
|+|||..++..+|+.+|..||.|..+.+..++.++.++|||||+|.+.++|..|+..|+|..++|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999887789999999999999999999999999999999998873
No 39
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.14 E-value=1.5e-10 Score=132.91 Aligned_cols=82 Identities=23% Similarity=0.356 Sum_probs=76.8
Q ss_pred CCCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003520 93 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 172 (813)
Q Consensus 93 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 172 (813)
....++|||+|||+.+++.+|..+|+.||.|..|.|+.++.+|+++|||||+|.+.++|.+||. |||..|.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 4457899999999999999999999999999999999999999999999999999999999997 799999999999987
Q ss_pred ech
Q 003520 173 DQA 175 (813)
Q Consensus 173 a~~ 175 (813)
+..
T Consensus 165 ~~~ 167 (457)
T TIGR01622 165 SQA 167 (457)
T ss_pred cch
Confidence 643
No 40
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.14 E-value=9.9e-10 Score=127.47 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=72.1
Q ss_pred CCCCceEEEccCCC-CCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003520 93 EKPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 171 (813)
Q Consensus 93 ~~~~~tLfVgNLp~-~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~ 171 (813)
..+.++|||+||++ .+++++|..+|+.||.|.+|+|+.++ +|||||+|.+.++|..||..|||..|.|+.|.|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 34678999999998 69999999999999999999998762 5899999999999999999999999999999999
Q ss_pred eechh
Q 003520 172 VDQAT 176 (813)
Q Consensus 172 ~a~~~ 176 (813)
++...
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 87543
No 41
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.14 E-value=1.3e-10 Score=135.61 Aligned_cols=79 Identities=24% Similarity=0.418 Sum_probs=73.9
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEee
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLKVD 173 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~-Gr~L~V~~a 173 (813)
..++|||+|||+++++++|..+|+.||.|..|+|+.| .+|+++|||||+|.+.++|..||..|||..|. |+.|.|.++
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4689999999999999999999999999999999999 79999999999999999999999999999986 888888765
Q ss_pred c
Q 003520 174 Q 174 (813)
Q Consensus 174 ~ 174 (813)
.
T Consensus 136 ~ 136 (578)
T TIGR01648 136 V 136 (578)
T ss_pred c
Confidence 4
No 42
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=2.6e-10 Score=117.35 Aligned_cols=88 Identities=16% Similarity=0.346 Sum_probs=82.7
Q ss_pred CCCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003520 93 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 172 (813)
Q Consensus 93 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 172 (813)
....++|.|.-||.++|.++|+.+|+..|.|.+|++++|+.+|.+-|||||.|.++.+|++||..|||..+..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred echhHHHH
Q 003520 173 DQATREYL 180 (813)
Q Consensus 173 a~~~kk~l 180 (813)
+.+....+
T Consensus 118 ARPSs~~I 125 (360)
T KOG0145|consen 118 ARPSSDSI 125 (360)
T ss_pred ccCChhhh
Confidence 98875544
No 43
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=3.6e-11 Score=128.23 Aligned_cols=79 Identities=28% Similarity=0.421 Sum_probs=76.1
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 173 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 173 (813)
.-|.||||.|++.+.++.|+..|..||+|+++.+.+|+.||+++||+||+|+-++.|+-|++.|||..++|++|+|..-
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 3689999999999999999999999999999999999999999999999999999999999999999999999999753
No 44
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=4.8e-11 Score=120.19 Aligned_cols=83 Identities=22% Similarity=0.396 Sum_probs=79.6
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 174 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 174 (813)
..+|||||+|...+++.-|...|-.||.|..+.++.|-.+++++|||||+|.-.++|..||..||+.+|-|+.|+|+++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hhH
Q 003520 175 ATR 177 (813)
Q Consensus 175 ~~k 177 (813)
+.+
T Consensus 89 P~k 91 (298)
T KOG0111|consen 89 PEK 91 (298)
T ss_pred Ccc
Confidence 653
No 45
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=1.5e-10 Score=108.81 Aligned_cols=80 Identities=18% Similarity=0.216 Sum_probs=77.7
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 174 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 174 (813)
.+..|||.++...+++++|...|.-||.|+.+.+..|+.||..+||++|+|++...|+.|+..|||..|.|.+|.|+|+-
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999984
No 46
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.08 E-value=1.3e-10 Score=114.53 Aligned_cols=80 Identities=19% Similarity=0.417 Sum_probs=76.5
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 174 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 174 (813)
...|||||||+..+++..|.++|-++|+|+.+.++.++.+.+.+|||||+|.+.++|.-||..||...+-|+.|+|+-+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999997554
No 47
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.06 E-value=1.1e-09 Score=91.19 Aligned_cols=74 Identities=27% Similarity=0.486 Sum_probs=68.8
Q ss_pred eEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003520 98 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 172 (813)
Q Consensus 98 tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 172 (813)
+|||+|||..+++.+|..+|..||.|..+.+..++ .+.+.|+|||+|.+.++|..|+..+++..++|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~-~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK-DTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999999875 447889999999999999999999999999999999864
No 48
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=3.8e-10 Score=120.40 Aligned_cols=86 Identities=19% Similarity=0.342 Sum_probs=82.6
Q ss_pred CCCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003520 93 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 172 (813)
Q Consensus 93 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 172 (813)
.+|...|||..|++.+++++|.-||+.||.|.+|.||+|..||.+-.||||+|.+.+++.+|.-.|+++.|+.+.|.|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred echhHH
Q 003520 173 DQATRE 178 (813)
Q Consensus 173 a~~~kk 178 (813)
+++..+
T Consensus 316 SQSVsk 321 (479)
T KOG0415|consen 316 SQSVSK 321 (479)
T ss_pred hhhhhh
Confidence 998766
No 49
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=9.2e-10 Score=114.28 Aligned_cols=78 Identities=24% Similarity=0.387 Sum_probs=72.8
Q ss_pred CCCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003520 93 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 172 (813)
Q Consensus 93 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 172 (813)
.+..|+||||||+..++++.|++.|+.||.|..|+|..+. ||+||.|.+.++|..||..+||..|+|+.+++.|
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 4568999999999999999999999999999999998874 9999999999999999999999999999999998
Q ss_pred echh
Q 003520 173 DQAT 176 (813)
Q Consensus 173 a~~~ 176 (813)
....
T Consensus 235 GKe~ 238 (321)
T KOG0148|consen 235 GKEG 238 (321)
T ss_pred cccC
Confidence 7543
No 50
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=1.9e-09 Score=97.43 Aligned_cols=82 Identities=16% Similarity=0.280 Sum_probs=73.8
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 174 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 174 (813)
-.+-|||.|||+.+|.+++..+|++||.|..++|-.. ...+|-|||.|++..+|.+|+.+|+|+.+.++.|.|-+-+
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 3678999999999999999999999999999998654 4567999999999999999999999999999999999877
Q ss_pred hhHHH
Q 003520 175 ATREY 179 (813)
Q Consensus 175 ~~kk~ 179 (813)
+.+++
T Consensus 94 ~~~~~ 98 (124)
T KOG0114|consen 94 PEDAF 98 (124)
T ss_pred HHHHH
Confidence 66443
No 51
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=1.3e-09 Score=119.07 Aligned_cols=88 Identities=20% Similarity=0.319 Sum_probs=78.2
Q ss_pred CCCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCce-eC--CeEEE
Q 003520 93 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN-ID--GQELM 169 (813)
Q Consensus 93 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~-i~--Gr~L~ 169 (813)
+....+||||.||..+++.+|+.+|.+||.|..|.|++|+.||.++|||||.|.+.++|..|+.+||+.. |- ...|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 3457799999999999999999999999999999999999999999999999999999999999998754 33 57788
Q ss_pred EEeechhHHHH
Q 003520 170 LKVDQATREYL 180 (813)
Q Consensus 170 V~~a~~~kk~l 180 (813)
|++++..+..+
T Consensus 111 vk~Ad~E~er~ 121 (510)
T KOG0144|consen 111 VKYADGERERI 121 (510)
T ss_pred ecccchhhhcc
Confidence 98888765543
No 52
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=2.9e-09 Score=119.24 Aligned_cols=84 Identities=17% Similarity=0.247 Sum_probs=77.6
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHh-----CC-ceeCCeEE
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-----NK-FNIDGQEL 168 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~L-----ng-~~i~Gr~L 168 (813)
-..||||.||||+||++.|...|++||.|.++.|+.++.||.++|+|||.|.+...|..||.+- .| +.|+|+.|
T Consensus 291 ~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~L 370 (678)
T KOG0127|consen 291 EGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLL 370 (678)
T ss_pred ccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEE
Confidence 3689999999999999999999999999999999999999999999999999999999999865 34 78999999
Q ss_pred EEEeechhHH
Q 003520 169 MLKVDQATRE 178 (813)
Q Consensus 169 ~V~~a~~~kk 178 (813)
.|..+...+.
T Consensus 371 kv~~Av~Rke 380 (678)
T KOG0127|consen 371 KVTLAVTRKE 380 (678)
T ss_pred eeeeccchHH
Confidence 9999877644
No 53
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.93 E-value=2.7e-09 Score=123.83 Aligned_cols=75 Identities=19% Similarity=0.185 Sum_probs=69.0
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHh--CCceeCCeEEEEEe
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL--NKFNIDGQELMLKV 172 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~L--ng~~i~Gr~L~V~~ 172 (813)
++++|||+|||+.+++.+|+.+|+.||.|.+|.++.+ +|||||+|.+.++|.+||..| |+..|+|+.|.|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4689999999999999999999999999999999864 489999999999999999864 78999999999999
Q ss_pred ech
Q 003520 173 DQA 175 (813)
Q Consensus 173 a~~ 175 (813)
+..
T Consensus 75 s~~ 77 (481)
T TIGR01649 75 STS 77 (481)
T ss_pred cCC
Confidence 864
No 54
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.92 E-value=1.4e-09 Score=122.44 Aligned_cols=80 Identities=26% Similarity=0.517 Sum_probs=74.7
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 174 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 174 (813)
+...||||||.+++++.+|+.+|..||.|..|.+..|..||.++||||++|.+.+.|.+|+..|||++|-|+.|+|.+-.
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 34449999999999999999999999999999999997899999999999999999999999999999999999987643
No 55
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.91 E-value=3.6e-09 Score=123.86 Aligned_cols=74 Identities=20% Similarity=0.416 Sum_probs=68.8
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcC--CceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVC--GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 172 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~--G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 172 (813)
...+|||+||++.+++++|+++|+.| |.|..|.++. +||||+|.+.++|.+||..|||..|+|+.|.|.|
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35789999999999999999999999 9999998764 5999999999999999999999999999999999
Q ss_pred echh
Q 003520 173 DQAT 176 (813)
Q Consensus 173 a~~~ 176 (813)
+...
T Consensus 304 Akp~ 307 (578)
T TIGR01648 304 AKPV 307 (578)
T ss_pred ccCC
Confidence 9653
No 56
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.91 E-value=6.8e-09 Score=120.88 Aligned_cols=75 Identities=24% Similarity=0.331 Sum_probs=61.9
Q ss_pred CCCCCCceEEEccCCCCCCHHHHHHHHhcC------------CceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHh
Q 003520 91 PAEKPQTKVYVGKIAPTADSDFVLSVLKVC------------GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 158 (813)
Q Consensus 91 ~~~~~~~tLfVgNLp~~vte~~L~~lF~~~------------G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~L 158 (813)
......++|||||||+.+++.+|..+|..| +.|..+. .++.+|||||+|.+.++|..||. |
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~------~~~~kg~afVeF~~~e~A~~Al~-l 242 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN------INKEKNFAFLEFRTVEEATFAMA-L 242 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE------ECCCCCEEEEEeCCHHHHhhhhc-C
Confidence 335568999999999999999999999975 2233333 24567999999999999999995 9
Q ss_pred CCceeCCeEEEEEe
Q 003520 159 NKFNIDGQELMLKV 172 (813)
Q Consensus 159 ng~~i~Gr~L~V~~ 172 (813)
||+.|.|+.|.|..
T Consensus 243 ~g~~~~g~~l~v~r 256 (509)
T TIGR01642 243 DSIIYSNVFLKIRR 256 (509)
T ss_pred CCeEeeCceeEecC
Confidence 99999999999864
No 57
>smart00361 RRM_1 RNA recognition motif.
Probab=98.90 E-value=5.6e-09 Score=89.41 Aligned_cols=61 Identities=20% Similarity=0.169 Sum_probs=55.0
Q ss_pred HHHHHHHHh----cCCceeEEE-EeccCCC--CCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003520 110 SDFVLSVLK----VCGTVKSWK-RAQYPSN--GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 170 (813)
Q Consensus 110 e~~L~~lF~----~~G~V~~vk-i~~d~~t--Gk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V 170 (813)
+++|..+|+ .||.|.++. ++.++.+ |.++|||||+|.+.++|..|+..|||..++|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 467888898 999999995 6666556 999999999999999999999999999999999986
No 58
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.89 E-value=2.6e-09 Score=114.25 Aligned_cols=105 Identities=27% Similarity=0.453 Sum_probs=91.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-------CCCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceE
Q 003520 69 GIPGVRPIMPPVVRPVPLPTVTPA-------EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFG 141 (813)
Q Consensus 69 ~~p~~~P~~~p~~~P~~~p~~~~~-------~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfg 141 (813)
.+.|.+++ .++.|.++|+..+. ......|||..+.++.++.+|+.+|..||.|++|++.+++..+.++|||
T Consensus 178 ~mlGGRNi--KVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyG 255 (544)
T KOG0124|consen 178 QMLGGRNI--KVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYG 255 (544)
T ss_pred ccccCccc--cccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCcccee
Confidence 34455655 56778777776654 4567899999999999999999999999999999999999889999999
Q ss_pred EEEeCCHHHHHHHHHHhCCceeCCeEEEEEeech
Q 003520 142 FCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 175 (813)
Q Consensus 142 FVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~ 175 (813)
|++|.+..+...||..||-+.++|..|+|.-+..
T Consensus 256 fiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 256 FIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred eEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 9999999999999999999999999999975543
No 59
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.87 E-value=1.1e-08 Score=83.37 Aligned_cols=56 Identities=29% Similarity=0.452 Sum_probs=50.8
Q ss_pred HHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003520 113 VLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 173 (813)
Q Consensus 113 L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 173 (813)
|..+|++||.|..+.+.... .++|||+|.+.++|..|+..|||..|+|+.|.|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997652 589999999999999999999999999999999986
No 60
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=3.5e-09 Score=104.52 Aligned_cols=80 Identities=18% Similarity=0.338 Sum_probs=71.7
Q ss_pred CCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003520 94 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 173 (813)
Q Consensus 94 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 173 (813)
...++|||||||.++.+.+|..||.+||.|..|.+-.. ..+.+||||+|+++.+|..||..-+|+.++|..|.|.|+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 35789999999999999999999999999999987432 345589999999999999999999999999999999998
Q ss_pred chh
Q 003520 174 QAT 176 (813)
Q Consensus 174 ~~~ 176 (813)
..-
T Consensus 81 rgg 83 (241)
T KOG0105|consen 81 RGG 83 (241)
T ss_pred cCC
Confidence 654
No 61
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.86 E-value=2.2e-09 Score=112.48 Aligned_cols=71 Identities=18% Similarity=0.407 Sum_probs=67.2
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeech
Q 003520 97 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 175 (813)
Q Consensus 97 ~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~ 175 (813)
..|||||||..+++..|+.+|.+||+|..|.||.+ ||||..++...+..||+.|||+.|+|..|+|.-+.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 47999999999999999999999999999999987 999999999999999999999999999999986654
No 62
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.81 E-value=6.4e-09 Score=113.85 Aligned_cols=82 Identities=18% Similarity=0.307 Sum_probs=77.4
Q ss_pred CCCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003520 93 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 172 (813)
Q Consensus 93 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 172 (813)
.+.+.+|||++||....+.+|...|..||.|++.++..|+.||-+++||||.|++..+|..||..|||+.|+++.|+|.+
T Consensus 421 GpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQl 500 (510)
T KOG0144|consen 421 GPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQL 500 (510)
T ss_pred CCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEe
Confidence 55678899999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred ec
Q 003520 173 DQ 174 (813)
Q Consensus 173 a~ 174 (813)
..
T Consensus 501 k~ 502 (510)
T KOG0144|consen 501 KR 502 (510)
T ss_pred ee
Confidence 54
No 63
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.76 E-value=1.9e-08 Score=101.40 Aligned_cols=83 Identities=25% Similarity=0.331 Sum_probs=76.4
Q ss_pred CCCceEEEccCCCCCCHHHHHHHHhcC-CceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003520 94 KPQTKVYVGKIAPTADSDFVLSVLKVC-GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 172 (813)
Q Consensus 94 ~~~~tLfVgNLp~~vte~~L~~lF~~~-G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 172 (813)
.....+||+.||..+.+.++..+|..| |.|..+++.+++.||.++|||||+|++.+-|.-|-..||++.|+|+.|.|.|
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 346789999999999999999999988 7788888889999999999999999999999999999999999999999998
Q ss_pred echh
Q 003520 173 DQAT 176 (813)
Q Consensus 173 a~~~ 176 (813)
=..-
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 7665
No 64
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.73 E-value=8.1e-08 Score=99.38 Aligned_cols=82 Identities=18% Similarity=0.409 Sum_probs=75.8
Q ss_pred CCCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003520 93 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 172 (813)
Q Consensus 93 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 172 (813)
......||+|.|.-.++++.|...|.+|-.....+++++.-||+++|||||.|.++.++.+|+..|||..++.+.|.+.-
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred ec
Q 003520 173 DQ 174 (813)
Q Consensus 173 a~ 174 (813)
..
T Consensus 267 S~ 268 (290)
T KOG0226|consen 267 SE 268 (290)
T ss_pred hh
Confidence 33
No 65
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.73 E-value=1.9e-08 Score=110.77 Aligned_cols=75 Identities=16% Similarity=0.359 Sum_probs=71.2
Q ss_pred CCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003520 94 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 173 (813)
Q Consensus 94 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 173 (813)
.....|||.||+.++|++.|+.+|+.||.|..|+.++| ||||.|.+.++|.+|+..+||+.|+|..|.|.+|
T Consensus 257 s~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLA 328 (506)
T KOG0117|consen 257 SKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLA 328 (506)
T ss_pred hheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEec
Confidence 34778999999999999999999999999999998876 9999999999999999999999999999999999
Q ss_pred chh
Q 003520 174 QAT 176 (813)
Q Consensus 174 ~~~ 176 (813)
.+.
T Consensus 329 KP~ 331 (506)
T KOG0117|consen 329 KPV 331 (506)
T ss_pred CCh
Confidence 876
No 66
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.70 E-value=1.8e-08 Score=99.59 Aligned_cols=81 Identities=23% Similarity=0.417 Sum_probs=74.9
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEE-EEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 173 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~v-ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 173 (813)
.+.+||||||.+.+++..|...|+.||.+... ++++++.||.++|||||.|.+.+.+.+|+..|||..+..++|.|.++
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 46899999999999999999999999987764 68888889999999999999999999999999999999999999987
Q ss_pred ch
Q 003520 174 QA 175 (813)
Q Consensus 174 ~~ 175 (813)
-+
T Consensus 175 ~k 176 (203)
T KOG0131|consen 175 FK 176 (203)
T ss_pred Ee
Confidence 44
No 67
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.69 E-value=3.6e-08 Score=102.15 Aligned_cols=83 Identities=20% Similarity=0.344 Sum_probs=76.2
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC---CeEEEEE
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQELMLK 171 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~---Gr~L~V~ 171 (813)
..++||||-|...-++++++.+|..||.|.+|.+.+. ..|.++||+||.|.+..+|..||..|||.... ...|+|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg-~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG-PDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC-CCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 5789999999999999999999999999999999998 49999999999999999999999999997655 5789999
Q ss_pred eechhHH
Q 003520 172 VDQATRE 178 (813)
Q Consensus 172 ~a~~~kk 178 (813)
|++..+.
T Consensus 97 ~ADTdkE 103 (371)
T KOG0146|consen 97 FADTDKE 103 (371)
T ss_pred eccchHH
Confidence 9987644
No 68
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.65 E-value=2.5e-08 Score=104.72 Aligned_cols=76 Identities=24% Similarity=0.432 Sum_probs=71.6
Q ss_pred CCCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003520 93 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 172 (813)
Q Consensus 93 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 172 (813)
....++||||||.+.|+..+|+..|.+||+|..|.|+.+ |+||.|.-.++|..|++.|||.+|.|+.++|.+
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 456889999999999999999999999999999999986 999999999999999999999999999999998
Q ss_pred echh
Q 003520 173 DQAT 176 (813)
Q Consensus 173 a~~~ 176 (813)
+.+.
T Consensus 147 stsr 150 (346)
T KOG0109|consen 147 STSR 150 (346)
T ss_pred eccc
Confidence 7654
No 69
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.64 E-value=7.9e-08 Score=105.29 Aligned_cols=80 Identities=25% Similarity=0.410 Sum_probs=74.6
Q ss_pred CCceEEEccCCCCCCHHHHHHHHh-cCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 173 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~-~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 173 (813)
..+.+||.|||+++.+.+|+.||. +.|.|..|.+..| .+||++|||.|+|.+++.+++|++.||.+.+.|+.|.|+-+
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 456799999999999999999997 7899999999999 69999999999999999999999999999999999999755
Q ss_pred ch
Q 003520 174 QA 175 (813)
Q Consensus 174 ~~ 175 (813)
..
T Consensus 122 ~d 123 (608)
T KOG4212|consen 122 HD 123 (608)
T ss_pred Cc
Confidence 43
No 70
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.60 E-value=3e-07 Score=93.48 Aligned_cols=85 Identities=14% Similarity=0.206 Sum_probs=70.7
Q ss_pred CCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEec-cCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC---CeEEE
Q 003520 94 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQ-YPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQELM 169 (813)
Q Consensus 94 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~-d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~---Gr~L~ 169 (813)
...+||||.+||.++..-+|..+|..|-....+.+-. ++...-++-+|||+|.+...|..|+..|||+.|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 3589999999999999999999999997776665533 2222234579999999999999999999999999 99999
Q ss_pred EEeechhHH
Q 003520 170 LKVDQATRE 178 (813)
Q Consensus 170 V~~a~~~kk 178 (813)
+.++.+..+
T Consensus 112 iElAKSNtK 120 (284)
T KOG1457|consen 112 IELAKSNTK 120 (284)
T ss_pred eeehhcCcc
Confidence 999987633
No 71
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=9.6e-08 Score=107.01 Aligned_cols=75 Identities=25% Similarity=0.472 Sum_probs=71.0
Q ss_pred EEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeechh
Q 003520 99 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 176 (813)
Q Consensus 99 LfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~~ 176 (813)
|||.||++.++...|..+|+.||.|++|++.++ ..| ++|| ||.|.+.++|.+||..|||..+.|+.|.|......
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~-~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATD-ENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEc-CCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 999999999999999999999999999999999 467 9999 99999999999999999999999999999876554
No 72
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.55 E-value=1.4e-07 Score=96.69 Aligned_cols=84 Identities=15% Similarity=0.313 Sum_probs=75.4
Q ss_pred CceEEEccCCCCCCHHHHHH----HHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003520 96 QTKVYVGKIAPTADSDFVLS----VLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 171 (813)
Q Consensus 96 ~~tLfVgNLp~~vte~~L~~----lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~ 171 (813)
..||||.||+..+.-++|+. +|+.||.|..|... .+.+.+|-|||.|.+...|..|+..|+|+.|-|+.++|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 44999999999999998877 99999999988764 378999999999999999999999999999999999999
Q ss_pred eechhHHHHHH
Q 003520 172 VDQATREYLER 182 (813)
Q Consensus 172 ~a~~~kk~le~ 182 (813)
+|....+.+..
T Consensus 86 yA~s~sdii~~ 96 (221)
T KOG4206|consen 86 YAKSDSDIIAQ 96 (221)
T ss_pred cccCccchhhc
Confidence 99887666643
No 73
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.53 E-value=1.2e-07 Score=109.71 Aligned_cols=92 Identities=24% Similarity=0.379 Sum_probs=80.5
Q ss_pred CCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003520 94 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 173 (813)
Q Consensus 94 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 173 (813)
...+.|+|.|||+.++-.+++.||..||.|.+|+|+.....+.++|||||+|-++.+|.+|+.+|.++.|-|+.|++.|+
T Consensus 611 k~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 611 KKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred cccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 34689999999999999999999999999999999876556778999999999999999999999999999999999998
Q ss_pred chhHHHHHHHHHh
Q 003520 174 QATREYLERYVDK 186 (813)
Q Consensus 174 ~~~kk~le~~k~k 186 (813)
...-. ++....+
T Consensus 691 ~~d~~-~e~~r~r 702 (725)
T KOG0110|consen 691 KSDNT-MEALRER 702 (725)
T ss_pred ccchH-HHHHHHH
Confidence 76533 4444443
No 74
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.49 E-value=2.2e-07 Score=108.11 Aligned_cols=75 Identities=13% Similarity=0.236 Sum_probs=70.9
Q ss_pred CceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeech
Q 003520 96 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 175 (813)
Q Consensus 96 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~ 175 (813)
++|||||+|+..+++.+|..+|..||.|.+|.++..+ |||||.+....+|.+||..|+.+.|.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R------~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR------GCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC------ceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 7899999999999999999999999999999997654 8999999999999999999999999999999999874
Q ss_pred h
Q 003520 176 T 176 (813)
Q Consensus 176 ~ 176 (813)
.
T Consensus 495 ~ 495 (894)
T KOG0132|consen 495 K 495 (894)
T ss_pred C
Confidence 3
No 75
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.45 E-value=3.7e-07 Score=105.74 Aligned_cols=78 Identities=28% Similarity=0.420 Sum_probs=70.8
Q ss_pred CceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCC----CCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003520 96 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNG----TPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 171 (813)
Q Consensus 96 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tG----k~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~ 171 (813)
.++|||.||++.++...|..+|...|.|.++.|...+ .+ .+.|||||+|.++++|.+|++.|+|+.|+|+.|.|.
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkk-d~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKK-DPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccc-cccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 3449999999999999999999999999999987764 33 355999999999999999999999999999999999
Q ss_pred eec
Q 003520 172 VDQ 174 (813)
Q Consensus 172 ~a~ 174 (813)
++.
T Consensus 594 ~S~ 596 (725)
T KOG0110|consen 594 ISE 596 (725)
T ss_pred ecc
Confidence 987
No 76
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.44 E-value=4.4e-07 Score=97.58 Aligned_cols=78 Identities=19% Similarity=0.321 Sum_probs=70.4
Q ss_pred CCCCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHH-HHhCCceeCCeEEEE
Q 003520 92 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRAL-RLLNKFNIDGQELML 170 (813)
Q Consensus 92 ~~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al-~~Lng~~i~Gr~L~V 170 (813)
......|||||+|...+++.+|+..|.+||.|.++.+.... +||||+|.+..+|+.|. ..+|.+.|+|+.|.|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 35568899999999999999999999999999999987653 69999999999999776 677989999999999
Q ss_pred Eeech
Q 003520 171 KVDQA 175 (813)
Q Consensus 171 ~~a~~ 175 (813)
.|...
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99877
No 77
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.42 E-value=6.9e-07 Score=103.00 Aligned_cols=84 Identities=25% Similarity=0.373 Sum_probs=75.4
Q ss_pred CCCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccC---CCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003520 93 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP---SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 169 (813)
Q Consensus 93 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~---~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~ 169 (813)
.+..++||||||++.+++.+|...|+.||+|.+++|++.+ .......||||.|.+..+|.+|+..|+|..|.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4567899999999999999999999999999999999865 2345668999999999999999999999999999999
Q ss_pred EEeechh
Q 003520 170 LKVDQAT 176 (813)
Q Consensus 170 V~~a~~~ 176 (813)
+.|+...
T Consensus 251 ~gWgk~V 257 (877)
T KOG0151|consen 251 LGWGKAV 257 (877)
T ss_pred ecccccc
Confidence 9998543
No 78
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.38 E-value=5.5e-07 Score=98.87 Aligned_cols=76 Identities=20% Similarity=0.257 Sum_probs=70.0
Q ss_pred CCCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003520 93 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 172 (813)
Q Consensus 93 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 172 (813)
....|+|||.|||+++|+..|+.-|..||.|.++.|+ ..|+++| .|.|.+++.|++|+.+|||..++|+.|.|.+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 4468999999999999999999999999999999984 4688887 8999999999999999999999999999986
Q ss_pred e
Q 003520 173 D 173 (813)
Q Consensus 173 a 173 (813)
+
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 3
No 79
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=7e-07 Score=100.12 Aligned_cols=77 Identities=19% Similarity=0.364 Sum_probs=70.9
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeechh
Q 003520 97 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 176 (813)
Q Consensus 97 ~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~~ 176 (813)
..|||| +.+|+..|..+|+.+|.|++++++++. | +.|||||.|.++.+|.+||..||...|.|+.|+|.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 899999999999999999999999995 4 9999999999999999999999999999999999998755
Q ss_pred HHH
Q 003520 177 REY 179 (813)
Q Consensus 177 kk~ 179 (813)
..+
T Consensus 76 ~~~ 78 (369)
T KOG0123|consen 76 PSL 78 (369)
T ss_pred Cce
Confidence 333
No 80
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.36 E-value=2.6e-07 Score=100.67 Aligned_cols=81 Identities=23% Similarity=0.420 Sum_probs=73.6
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 174 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 174 (813)
..++||||+|+|.++++.|+..|..||.|..|.++.++.+|.++||+||+|.++..+..+|.. .-+.|+|+.|.++-+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 578999999999999999999999999999999999999999999999999999999988874 5577889998887665
Q ss_pred hh
Q 003520 175 AT 176 (813)
Q Consensus 175 ~~ 176 (813)
+.
T Consensus 84 ~r 85 (311)
T KOG4205|consen 84 SR 85 (311)
T ss_pred Cc
Confidence 54
No 81
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.34 E-value=1.5e-06 Score=93.42 Aligned_cols=83 Identities=24% Similarity=0.365 Sum_probs=75.0
Q ss_pred CCCCceEEEccCCCCCCHHHHHHHHhcCCceeE--------EEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC
Q 003520 93 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 164 (813)
Q Consensus 93 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~--------vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~ 164 (813)
....+.|||.|||.++|.+++..+|++||.|.. |++.++ ..|+.+|=|.|.|...+++.-|+.+|++..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 344667999999999999999999999998864 788888 57999999999999999999999999999999
Q ss_pred CeEEEEEeechh
Q 003520 165 GQELMLKVDQAT 176 (813)
Q Consensus 165 Gr~L~V~~a~~~ 176 (813)
|+.|+|..|.-.
T Consensus 210 g~~~rVerAkfq 221 (382)
T KOG1548|consen 210 GKKLRVERAKFQ 221 (382)
T ss_pred CcEEEEehhhhh
Confidence 999999887543
No 82
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.27 E-value=1.1e-06 Score=92.47 Aligned_cols=80 Identities=25% Similarity=0.387 Sum_probs=74.9
Q ss_pred CCCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003520 93 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 172 (813)
Q Consensus 93 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 172 (813)
......+||||+.+.++-..+...|..||.|..+.+..+...|.++||+||+|.+...+..|+. |||..|.|+.|.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 3457899999999999999999999999999999999999899999999999999999999999 899999999999975
Q ss_pred e
Q 003520 173 D 173 (813)
Q Consensus 173 a 173 (813)
-
T Consensus 177 ~ 177 (231)
T KOG4209|consen 177 K 177 (231)
T ss_pred e
Confidence 3
No 83
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.24 E-value=4.6e-06 Score=94.25 Aligned_cols=76 Identities=26% Similarity=0.418 Sum_probs=66.6
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 171 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~ 171 (813)
...+|||+|||++++..+|..+|..||.|+...|....-.++..|||||+|.+..++..||.+ +-..|+|++|.|.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Ve 362 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVE 362 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEE
Confidence 356699999999999999999999999999888765423466669999999999999999997 7889999999995
No 84
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.22 E-value=3.6e-06 Score=88.64 Aligned_cols=81 Identities=17% Similarity=0.202 Sum_probs=74.9
Q ss_pred CCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003520 94 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 173 (813)
Q Consensus 94 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 173 (813)
...++|+|.||++.|++.+|+++|..||.+..+.+.+++ +|.+.|.|-|.|...++|.+|+..|||+.++|+.+.+...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 345889999999999999999999999999999999994 9999999999999999999999999999999999988765
Q ss_pred ch
Q 003520 174 QA 175 (813)
Q Consensus 174 ~~ 175 (813)
..
T Consensus 160 ~~ 161 (243)
T KOG0533|consen 160 SS 161 (243)
T ss_pred cC
Confidence 44
No 85
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.17 E-value=2.5e-06 Score=97.61 Aligned_cols=84 Identities=23% Similarity=0.428 Sum_probs=78.2
Q ss_pred CCCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003520 93 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 172 (813)
Q Consensus 93 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 172 (813)
....+.+|||+||...++..+.+++..||.+....++.+..+|.++||+|++|.++.-+..|+..|||..+++++|.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 34578899999999999999999999999999999999998999999999999999999999999999999999999987
Q ss_pred echh
Q 003520 173 DQAT 176 (813)
Q Consensus 173 a~~~ 176 (813)
|-.-
T Consensus 366 A~~g 369 (500)
T KOG0120|consen 366 AIVG 369 (500)
T ss_pred hhcc
Confidence 6543
No 86
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.12 E-value=1.2e-06 Score=89.12 Aligned_cols=79 Identities=14% Similarity=0.141 Sum_probs=72.5
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 174 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 174 (813)
..+||||+|+...|+++.|.++|-..|+|..+.|..+ ..++.+ ||||.|.+..++.-|+.+|||..+.+..|.|.+--
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~-~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSG-QDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCC-ccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 4789999999999999999999999999999999887 477777 99999999999999999999999999999998754
Q ss_pred h
Q 003520 175 A 175 (813)
Q Consensus 175 ~ 175 (813)
.
T Consensus 86 G 86 (267)
T KOG4454|consen 86 G 86 (267)
T ss_pred C
Confidence 4
No 87
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.08 E-value=3.9e-06 Score=91.63 Aligned_cols=81 Identities=20% Similarity=0.372 Sum_probs=75.4
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 174 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 174 (813)
...+||||+||.++++.+|+..|.+||.|..+-++.|..+..++|||||+|.+.+++..++. .+.+.|.|+.+.|+.|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 46799999999999999999999999999999999999999999999999999999999887 48899999999998887
Q ss_pred hh
Q 003520 175 AT 176 (813)
Q Consensus 175 ~~ 176 (813)
+.
T Consensus 175 pk 176 (311)
T KOG4205|consen 175 PK 176 (311)
T ss_pred ch
Confidence 65
No 88
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.97 E-value=6e-06 Score=85.37 Aligned_cols=72 Identities=25% Similarity=0.415 Sum_probs=65.9
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeechh
Q 003520 97 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 176 (813)
Q Consensus 97 ~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~~ 176 (813)
..||||+||+.+.+.+|..||..||.|..+.+.. |||||+|.+..+|..||.-|||.+|.|-.+.|.|+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4689999999999999999999999999987743 69999999999999999999999999999998888754
No 89
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.97 E-value=2.9e-05 Score=90.75 Aligned_cols=16 Identities=6% Similarity=0.221 Sum_probs=6.0
Q ss_pred EEEeechhHHHHHHHH
Q 003520 169 MLKVDQATREYLERYV 184 (813)
Q Consensus 169 ~V~~a~~~kk~le~~k 184 (813)
.|+-+.-+..+|+++.
T Consensus 724 evne~vLse~~iqnLi 739 (1102)
T KOG1924|consen 724 EVNEDVLSESMIQNLI 739 (1102)
T ss_pred hccHHHHHHHHHHHHH
Confidence 3333333333444433
No 90
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.91 E-value=2.4e-05 Score=89.05 Aligned_cols=72 Identities=22% Similarity=0.399 Sum_probs=64.6
Q ss_pred CCCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003520 93 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 169 (813)
Q Consensus 93 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~ 169 (813)
..+..+|+|-|||..|+.+.|..+|+.||.|+.++. |-...|..||+|.|...|.+|++.||+..|.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 345789999999999999999999999999999654 344568999999999999999999999999998877
No 91
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=97.78 E-value=0.00067 Score=78.96 Aligned_cols=33 Identities=36% Similarity=0.672 Sum_probs=26.2
Q ss_pred CccccCCcCCCCCCcchhcccCCCCcccCCCChH
Q 003520 572 KRTAVPSVFHVEDDDDADKDKKMRPLVPIDYSTE 605 (813)
Q Consensus 572 kr~~v~~vf~~~dde~~~~~~~kr~Lvpl~y~~e 605 (813)
+.+.+.+||+.++|.|.+--.++ +||||+|+..
T Consensus 515 kk~~~~~v~~~~~d~Dk~v~~~k-k~vp~dyd~n 547 (668)
T KOG2253|consen 515 KKLPETGVFREDDDEDKNVHEKK-KLVPLDYDRN 547 (668)
T ss_pred ccCCCcccccccCCcccccchhh-hcccccCChh
Confidence 45789999999988875544444 9999999985
No 92
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.74 E-value=0.00021 Score=65.41 Aligned_cols=78 Identities=15% Similarity=0.224 Sum_probs=68.4
Q ss_pred ceEEEccCCCCCCHHHHHHHHhc--CCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC----CeEEEE
Q 003520 97 TKVYVGKIAPTADSDFVLSVLKV--CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID----GQELML 170 (813)
Q Consensus 97 ~tLfVgNLp~~vte~~L~~lF~~--~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~----Gr~L~V 170 (813)
+||-|.|||...+...|..++.. .|..--+.++.|..++-..|||||.|.++..|..-...++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999999874 367777788888888999999999999999999999999999876 667777
Q ss_pred Eeec
Q 003520 171 KVDQ 174 (813)
Q Consensus 171 ~~a~ 174 (813)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7774
No 93
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.70 E-value=0.00023 Score=78.38 Aligned_cols=76 Identities=14% Similarity=0.247 Sum_probs=68.6
Q ss_pred CceEEEccCCC-CCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 003520 96 QTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 174 (813)
Q Consensus 96 ~~tLfVgNLp~-~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 174 (813)
.+.|.|.||.. .+|.+.|..+|+.||.|.+|+|..++. --|.|.|.+...|.-|+.+|+|..|.|+.|+|.++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 57889999976 689999999999999999999988742 479999999999999999999999999999999876
Q ss_pred hh
Q 003520 175 AT 176 (813)
Q Consensus 175 ~~ 176 (813)
-+
T Consensus 372 H~ 373 (492)
T KOG1190|consen 372 HT 373 (492)
T ss_pred Cc
Confidence 54
No 94
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.58 E-value=0.00037 Score=79.83 Aligned_cols=79 Identities=13% Similarity=0.171 Sum_probs=64.7
Q ss_pred CCCCCceEEEccCCCCCCHHHHHHHHh-cCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC---CeE
Q 003520 92 AEKPQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQE 167 (813)
Q Consensus 92 ~~~~~~tLfVgNLp~~vte~~L~~lF~-~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~---Gr~ 167 (813)
....++.|||.||-.-+|..+|+.+++ .||.|... +.| +.+..|||.|.+.++|...+.+|||+.+- ++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmD----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMD----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHH----HhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 355688999999999999999999999 66666665 333 34568999999999999999999998653 778
Q ss_pred EEEEeechh
Q 003520 168 LMLKVDQAT 176 (813)
Q Consensus 168 L~V~~a~~~ 176 (813)
|.|.|+...
T Consensus 514 L~adf~~~d 522 (718)
T KOG2416|consen 514 LIADFVRAD 522 (718)
T ss_pred eEeeecchh
Confidence 888887543
No 95
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.52 E-value=0.0002 Score=78.21 Aligned_cols=82 Identities=15% Similarity=0.231 Sum_probs=74.8
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeE--------EEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCe
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ 166 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~--------vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr 166 (813)
...+|||-+||..++...|..+|.+||.|.. +.|.+++.|++++|=|.|+|.++..|+.||..+++..|.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 4679999999999999999999999998863 56778889999999999999999999999999999999999
Q ss_pred EEEEEeechh
Q 003520 167 ELMLKVDQAT 176 (813)
Q Consensus 167 ~L~V~~a~~~ 176 (813)
.|.|.++..+
T Consensus 145 ~ikvs~a~~r 154 (351)
T KOG1995|consen 145 TIKVSLAERR 154 (351)
T ss_pred Cchhhhhhhc
Confidence 9998877654
No 96
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.50 E-value=0.00025 Score=72.66 Aligned_cols=67 Identities=16% Similarity=0.273 Sum_probs=56.6
Q ss_pred CCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC
Q 003520 94 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 164 (813)
Q Consensus 94 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~ 164 (813)
....||||.||..+|+++.|+.+|+.|.....++|... .|. +.+||+|++.+.|..|+..|.|..|-
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g~--~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GGM--PVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CCc--ceEeecHHHHHHHHHHHHHhhcceec
Confidence 34679999999999999999999999988777776322 333 58999999999999999999987763
No 97
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.47 E-value=6.7e-05 Score=85.39 Aligned_cols=85 Identities=18% Similarity=0.303 Sum_probs=78.5
Q ss_pred CCCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003520 93 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 172 (813)
Q Consensus 93 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 172 (813)
....+|||+..|+-.++.-+|..||+.+|+|..|.+|.|+.++.++|.|||+|.+.+++..||. |.|..+.|.+|.|..
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecc
Confidence 4568899999999999999999999999999999999999999999999999999999999995 899999999999987
Q ss_pred echhHH
Q 003520 173 DQATRE 178 (813)
Q Consensus 173 a~~~kk 178 (813)
..+.++
T Consensus 255 sEaekn 260 (549)
T KOG0147|consen 255 SEAEKN 260 (549)
T ss_pred cHHHHH
Confidence 766543
No 98
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.38 E-value=0.00029 Score=76.05 Aligned_cols=80 Identities=23% Similarity=0.302 Sum_probs=70.7
Q ss_pred CCCCceEEEccCCCCCCHHHHHHHHhcCC--ceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003520 93 EKPQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 170 (813)
Q Consensus 93 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G--~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V 170 (813)
......+|||||.|++|+.+|.+.+...| .+..+++..++.+|.++|||+|...+..+....+.+|--..|+|+.-.|
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 44567899999999999999999998877 5677888888999999999999999999999999999999999988766
Q ss_pred Ee
Q 003520 171 KV 172 (813)
Q Consensus 171 ~~ 172 (813)
--
T Consensus 157 ~~ 158 (498)
T KOG4849|consen 157 LS 158 (498)
T ss_pred ec
Confidence 43
No 99
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.21 E-value=0.0053 Score=66.63 Aligned_cols=77 Identities=13% Similarity=0.113 Sum_probs=54.8
Q ss_pred EEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHH-HHHHHhCCceeCCeEEEEEeechhH
Q 003520 99 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVL-RALRLLNKFNIDGQELMLKVDQATR 177 (813)
Q Consensus 99 LfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~-~Al~~Lng~~i~Gr~L~V~~a~~~k 177 (813)
+.|+--.+.+++.++..++...-.|.+..|.+. .++.+.| .|.+..+.. .||.++. .-+|.-++.|+
T Consensus 348 r~~~p~~~plSeAEFEdiM~RNraiSSSAIsrA-vsdASaG----Dy~~AiETllTAI~lIK-------qSrv~~DdRCr 415 (498)
T KOG4849|consen 348 RHVNPQMFPLSEAEFEDIMTRNRAISSSAISRA-VSDASAG----DYKGAIETLLTAIQLIK-------QSRVGHDDRCR 415 (498)
T ss_pred ccCCCCCccchHHHHHHHHhhcchhhHHHHHHH-hcccccc----cchhHHHHHHHHHHHHH-------hhccccchHHH
Confidence 455556667899999999999988988877665 5677766 666665544 7777654 34566677777
Q ss_pred HHHHHHHHhh
Q 003520 178 EYLERYVDKK 187 (813)
Q Consensus 178 k~le~~k~kk 187 (813)
.++..++.+.
T Consensus 416 vLissL~dcL 425 (498)
T KOG4849|consen 416 VLISSLEDCL 425 (498)
T ss_pred HHHHHHHHHH
Confidence 7776665554
No 100
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.21 E-value=0.0013 Score=58.09 Aligned_cols=71 Identities=20% Similarity=0.312 Sum_probs=49.3
Q ss_pred ceEEEccCCCCCCHH----HHHHHHhcCC-ceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003520 97 TKVYVGKIAPTADSD----FVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 171 (813)
Q Consensus 97 ~tLfVgNLp~~vte~----~L~~lF~~~G-~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~ 171 (813)
..|||.|||.+.... -|++|+..|| .|..+ + .+-|+|-|.+.+.|.+|..-|+|-.+-|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-------~---~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-------S---GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-------e---CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 579999999988875 6778888997 45554 1 2689999999999999999999999999999999
Q ss_pred eechhH
Q 003520 172 VDQATR 177 (813)
Q Consensus 172 ~a~~~k 177 (813)
+....+
T Consensus 73 ~~~~~r 78 (90)
T PF11608_consen 73 FSPKNR 78 (90)
T ss_dssp SS--S-
T ss_pred EcCCcc
Confidence 875543
No 101
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.09 E-value=0.00026 Score=76.98 Aligned_cols=81 Identities=22% Similarity=0.383 Sum_probs=73.8
Q ss_pred CCceEE-EccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003520 95 PQTKVY-VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 173 (813)
Q Consensus 95 ~~~tLf-VgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 173 (813)
+..++| |+||++.++.++|...|..||.|..+++..++.+|.++|||||.|.....+..++.. +...+.|+.+.|..+
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 345555 999999999999999999999999999999999999999999999999999999987 888999999999877
Q ss_pred chh
Q 003520 174 QAT 176 (813)
Q Consensus 174 ~~~ 176 (813)
...
T Consensus 262 ~~~ 264 (285)
T KOG4210|consen 262 EPR 264 (285)
T ss_pred CCC
Confidence 654
No 102
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.94 E-value=0.019 Score=63.00 Aligned_cols=77 Identities=22% Similarity=0.255 Sum_probs=67.4
Q ss_pred CCCCceEEEccCCCC-CCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003520 93 EKPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 171 (813)
Q Consensus 93 ~~~~~tLfVgNLp~~-vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~ 171 (813)
..+++.+.|.+|... ++.+.|..+|..||.|..+++++.+ . |-|.|++.+....++|+.+||+..+-|.+|.|.
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-~----gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-P----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-c----ceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 346888999999874 6667999999999999999998763 2 689999999999999999999999999999998
Q ss_pred eec
Q 003520 172 VDQ 174 (813)
Q Consensus 172 ~a~ 174 (813)
++.
T Consensus 359 ~Sk 361 (494)
T KOG1456|consen 359 VSK 361 (494)
T ss_pred ecc
Confidence 763
No 103
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.88 E-value=0.00022 Score=78.07 Aligned_cols=65 Identities=14% Similarity=-0.032 Sum_probs=53.4
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 164 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~ 164 (813)
..+|++|++|+..+-..++..+|..+|.|....+. .|-...||.+.|....+...|+.. +|..+.
T Consensus 150 irRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 150 IRRTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred HHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHHh-cchhhh
Confidence 45889999999999999999999999999887663 444556777999988888888885 776654
No 104
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.88 E-value=0.013 Score=68.67 Aligned_cols=77 Identities=17% Similarity=0.177 Sum_probs=65.9
Q ss_pred CceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003520 96 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 172 (813)
Q Consensus 96 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 172 (813)
.+.|-|.|+|++++-++|..||.-|-.+-...+++--..|++.|-|.|-|++.++|.+|..-|++..|..+.+.|.+
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 34788999999999999999999997665433333337899999999999999999999999999999999988764
No 105
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.88 E-value=0.00064 Score=71.18 Aligned_cols=89 Identities=26% Similarity=0.300 Sum_probs=68.2
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCC--------CCCcc----eEEEEeCCHHHHHHHHHHhCCce
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN--------GTPKG----FGFCEFESAEGVLRALRLLNKFN 162 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~t--------Gk~kG----fgFVeF~~~e~A~~Al~~Lng~~ 162 (813)
....||++|||+.+...-|++||+.||.|-+|.+.....+ |...+ =|.|+|.+...|.++...|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999987654333 23222 27899999999999999999999
Q ss_pred eCCeEE-EEEeechhHHHHHHH
Q 003520 163 IDGQEL-MLKVDQATREYLERY 183 (813)
Q Consensus 163 i~Gr~L-~V~~a~~~kk~le~~ 183 (813)
|+|++- .+..+.-.-+||..|
T Consensus 153 Iggkk~S~~~~dlWNmKYLprF 174 (278)
T KOG3152|consen 153 IGGKKKSPFRDDLWNMKYLPRF 174 (278)
T ss_pred cCCCCCCchHHhhhhhhhccCc
Confidence 998763 333334444555433
No 106
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.88 E-value=0.0045 Score=64.06 Aligned_cols=77 Identities=17% Similarity=0.307 Sum_probs=68.1
Q ss_pred CCCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 003520 93 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLK 171 (813)
Q Consensus 93 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~-Gr~L~V~ 171 (813)
.++..+||+.|||..++.+.|..+|..|+....++++... .+.+||+|.+...|..|...|.|..|- ...+.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 4568899999999999999999999999999999987653 379999999999999999999999888 7788887
Q ss_pred eec
Q 003520 172 VDQ 174 (813)
Q Consensus 172 ~a~ 174 (813)
++.
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 664
No 107
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.88 E-value=0.0047 Score=57.49 Aligned_cols=85 Identities=19% Similarity=0.333 Sum_probs=52.8
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhC-----CceeCCeEEEEE
Q 003520 97 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN-----KFNIDGQELMLK 171 (813)
Q Consensus 97 ~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Ln-----g~~i~Gr~L~V~ 171 (813)
+.|+|.+++..|+..+|+.+|+.||.|..|.+..+- .-|||-|.+++.|..|+..+. +..|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 578999999999999999999999999999886542 489999999999999997663 456777776666
Q ss_pred ee--chhHHHHHHHHHhh
Q 003520 172 VD--QATREYLERYVDKK 187 (813)
Q Consensus 172 ~a--~~~kk~le~~k~kk 187 (813)
+- ..-+.|++...+.+
T Consensus 76 vLeGeeE~~Yw~ki~e~~ 93 (105)
T PF08777_consen 76 VLEGEEEEEYWKKIIEDR 93 (105)
T ss_dssp ---HHHHHHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHH
Confidence 53 34456776666543
No 108
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.86 E-value=0.0022 Score=72.48 Aligned_cols=74 Identities=22% Similarity=0.376 Sum_probs=63.2
Q ss_pred CceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003520 96 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 173 (813)
Q Consensus 96 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 173 (813)
..-|-+.+|||.||+.+|..||+.|+ |..+.+.+ .+|+..|=|||+|.+.+++..||+. +...++.+-|.|--+
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTA 83 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEcc
Confidence 45667789999999999999999996 66655554 5899999999999999999999994 888888888888644
No 109
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.83 E-value=0.0032 Score=72.04 Aligned_cols=77 Identities=18% Similarity=0.295 Sum_probs=63.2
Q ss_pred CCceEEEccCCCCCCH------HHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC-CeE
Q 003520 95 PQTKVYVGKIAPTADS------DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQE 167 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte------~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~-Gr~ 167 (813)
-...|+|.|+|---.. .-|..+|+++|+|+...++.+. .|+++||.|++|.+..+|..|+..|||+.|+ .+.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 4567889998853221 2567899999999999999885 5669999999999999999999999999998 666
Q ss_pred EEEEe
Q 003520 168 LMLKV 172 (813)
Q Consensus 168 L~V~~ 172 (813)
+.|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 66653
No 110
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.50 E-value=0.0018 Score=67.22 Aligned_cols=69 Identities=19% Similarity=0.334 Sum_probs=61.5
Q ss_pred CCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003520 94 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 170 (813)
Q Consensus 94 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V 170 (813)
...+.++|-|++..+.+.+|...|..+|.+....+ ..+|+||.|....++.+||..|+|..+.|+.|.|
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 35788999999999999999999999999944333 3379999999999999999999999999999999
No 111
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.34 E-value=0.0034 Score=69.88 Aligned_cols=85 Identities=22% Similarity=0.331 Sum_probs=65.4
Q ss_pred CCCCCCCCCCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEecc---CCC--CCC--------cceEEEEeCCHHHHH
Q 003520 86 LPTVTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQY---PSN--GTP--------KGFGFCEFESAEGVL 152 (813)
Q Consensus 86 ~p~~~~~~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d---~~t--Gk~--------kGfgFVeF~~~e~A~ 152 (813)
+|......-+++||.+-|||.+-.-+-|..||+.||.|..|+|+.- +.+ |.+ +-||||+|...+.|.
T Consensus 221 lp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~ 300 (484)
T KOG1855|consen 221 LPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAAR 300 (484)
T ss_pred CCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHH
Confidence 4444444568999999999999888999999999999999998765 322 222 457999999999999
Q ss_pred HHHHHhCCceeCCeEEEE
Q 003520 153 RALRLLNKFNIDGQELML 170 (813)
Q Consensus 153 ~Al~~Lng~~i~Gr~L~V 170 (813)
+|...||.....-..|.|
T Consensus 301 KA~e~~~~e~~wr~glkv 318 (484)
T KOG1855|consen 301 KARELLNPEQNWRMGLKV 318 (484)
T ss_pred HHHHhhchhhhhhhcchh
Confidence 999988655443333443
No 112
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.32 E-value=0.0083 Score=64.93 Aligned_cols=88 Identities=18% Similarity=0.245 Sum_probs=66.2
Q ss_pred CceEEEccCCCCCCHHH------HHHHHhcCCceeEEEEeccC-CCCCCcc-e-EEEEeCCHHHHHHHHHHhCCceeCCe
Q 003520 96 QTKVYVGKIAPTADSDF------VLSVLKVCGTVKSWKRAQYP-SNGTPKG-F-GFCEFESAEGVLRALRLLNKFNIDGQ 166 (813)
Q Consensus 96 ~~tLfVgNLp~~vte~~------L~~lF~~~G~V~~vki~~d~-~tGk~kG-f-gFVeF~~~e~A~~Al~~Lng~~i~Gr 166 (813)
..-+||-+|++.+..++ -.++|++||.|..+.|-+.. ......+ + -||+|.+.++|.+||..++|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45689999999887765 34899999999988775532 1111223 2 28999999999999999999999999
Q ss_pred EEEEEeechhHHHHHHHHH
Q 003520 167 ELMLKVDQATREYLERYVD 185 (813)
Q Consensus 167 ~L~V~~a~~~kk~le~~k~ 185 (813)
.|+..+. +.+|-..|-.
T Consensus 194 ~lkatYG--TTKYCtsYLR 210 (480)
T COG5175 194 VLKATYG--TTKYCTSYLR 210 (480)
T ss_pred eEeeecC--chHHHHHHHc
Confidence 9988764 4456555553
No 113
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.05 E-value=0.013 Score=67.00 Aligned_cols=65 Identities=20% Similarity=0.343 Sum_probs=60.5
Q ss_pred CCCCceEEEccCCCCCCHHHHHHHHh-cCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHH
Q 003520 93 EKPQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 157 (813)
Q Consensus 93 ~~~~~tLfVgNLp~~vte~~L~~lF~-~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~ 157 (813)
-.+.+|||||+||.-++..+|..||. -||.|..+.|=+|+.=+.++|-|-|+|.+..+-.+||.+
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 34689999999999999999999999 899999999999987889999999999999999999974
No 114
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.00 E-value=0.031 Score=54.75 Aligned_cols=71 Identities=21% Similarity=0.341 Sum_probs=53.1
Q ss_pred CCCceEEEccCCC------CCCHH---HHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC
Q 003520 94 KPQTKVYVGKIAP------TADSD---FVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 164 (813)
Q Consensus 94 ~~~~tLfVgNLp~------~vte~---~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~ 164 (813)
++..||.|.-+.+ ...+. .|.+.|..||.|.-++++.+ .-+|+|.+-.+|.+|+. |+|..|+
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~ 95 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVN 95 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEET
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEEC
Confidence 3467777766651 23332 77788889999998888654 67999999999999999 6999999
Q ss_pred CeEEEEEee
Q 003520 165 GQELMLKVD 173 (813)
Q Consensus 165 Gr~L~V~~a 173 (813)
|+.|.|..-
T Consensus 96 g~~l~i~LK 104 (146)
T PF08952_consen 96 GRTLKIRLK 104 (146)
T ss_dssp TEEEEEEE-
T ss_pred CEEEEEEeC
Confidence 999999753
No 115
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=95.94 E-value=0.022 Score=64.74 Aligned_cols=75 Identities=19% Similarity=0.172 Sum_probs=62.2
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeE-EEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 171 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~-vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~ 171 (813)
+...|-+.+||+.||+.+|.+||+-.-.|.. +.++.+ ..|++.|=|||.|++.+.|+.||.. |...|+-+-|.|.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF 177 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVF 177 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEee
Confidence 4667889999999999999999997654444 445555 5788999999999999999999985 7778888887774
No 116
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=95.67 E-value=0.021 Score=63.53 Aligned_cols=79 Identities=15% Similarity=0.221 Sum_probs=66.8
Q ss_pred CCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCe-EEEEEe
Q 003520 94 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-ELMLKV 172 (813)
Q Consensus 94 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr-~L~V~~ 172 (813)
+++.+|...|||..+++++|+.+|...|..+..... -++.+.++.+.+.+.++|..|+..+|.+.+++. .|+|.|
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeee----cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 567899999999999999999999998877655432 234557999999999999999999999999854 899999
Q ss_pred echh
Q 003520 173 DQAT 176 (813)
Q Consensus 173 a~~~ 176 (813)
+..+
T Consensus 488 Sks~ 491 (492)
T KOG1190|consen 488 SKST 491 (492)
T ss_pred eccc
Confidence 8753
No 117
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.38 E-value=0.059 Score=49.78 Aligned_cols=79 Identities=20% Similarity=0.149 Sum_probs=52.0
Q ss_pred CceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCC-------CCCCcceEEEEeCCHHHHHHHHHHhCCceeCCe-E
Q 003520 96 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPS-------NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-E 167 (813)
Q Consensus 96 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~-------tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr-~ 167 (813)
.+.|.|-+.|+. .-..+...|++||.|....-+.... ......+-.|.|.++.+|.+||.. ||..|.|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 455777788877 4467888999999998875111100 112336889999999999999995 99999985 4
Q ss_pred EEEEeechh
Q 003520 168 LMLKVDQAT 176 (813)
Q Consensus 168 L~V~~a~~~ 176 (813)
+-|.+....
T Consensus 84 vGV~~~~~~ 92 (100)
T PF05172_consen 84 VGVKPCDPA 92 (100)
T ss_dssp EEEEE-HHH
T ss_pred EEEEEcHHh
Confidence 557766543
No 118
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=95.32 E-value=0.044 Score=59.92 Aligned_cols=82 Identities=12% Similarity=0.206 Sum_probs=64.1
Q ss_pred CCCceEEEccCCC----CCCH-------HHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCce
Q 003520 94 KPQTKVYVGKIAP----TADS-------DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 162 (813)
Q Consensus 94 ~~~~tLfVgNLp~----~vte-------~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~ 162 (813)
...+||.|.||=. ..+. ++|..-..+||.|.+|.|.- .-+.|.+-|.|.+.+.|..||+.|+|..
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 4578999999843 2332 24555567999999998743 3466899999999999999999999999
Q ss_pred eCCeEEEEEeechhHHH
Q 003520 163 IDGQELMLKVDQATREY 179 (813)
Q Consensus 163 i~Gr~L~V~~a~~~kk~ 179 (813)
|+|++|...+...+.+|
T Consensus 339 fdgRql~A~i~DG~t~~ 355 (382)
T KOG1548|consen 339 FDGRQLTASIWDGKTKF 355 (382)
T ss_pred ecceEEEEEEeCCccee
Confidence 99999999877665333
No 119
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.16 E-value=0.067 Score=62.93 Aligned_cols=78 Identities=12% Similarity=0.077 Sum_probs=67.0
Q ss_pred CCCceEEEccCCCCCCHHHHHHHHhcCCceeE-EEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003520 94 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 172 (813)
Q Consensus 94 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~-vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 172 (813)
.....|||-.||..++...+..+|...-.|.. |.|.+. -+++..+-|||.|..+..+..|+..-+.+.++.+.|.|.-
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 34778999999999999999999998777776 666565 4889999999999999999999887788888889999864
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.85 E-value=0.011 Score=70.85 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=71.8
Q ss_pred CceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeech
Q 003520 96 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 175 (813)
Q Consensus 96 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~ 175 (813)
...|||.|+|+.+|.+.|+.++..+|.+.+..+++. ..|+++|.+||.|.+..++.+++....+..+.-+.+.|.++..
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 568999999999999999999999999999998888 5999999999999999999999988888888877777777655
No 121
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=94.72 E-value=0.079 Score=61.50 Aligned_cols=64 Identities=20% Similarity=0.186 Sum_probs=52.1
Q ss_pred HHHHHHhcCCceeEEEEecc-C--CCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeech
Q 003520 112 FVLSVLKVCGTVKSWKRAQY-P--SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 175 (813)
Q Consensus 112 ~L~~lF~~~G~V~~vki~~d-~--~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~ 175 (813)
+++.-+++||.|..|.+.+. . ...-..|.-||+|.+.+++++|+..|+|..|.|+.++..+-..
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 34445578999999998876 2 3344568889999999999999999999999999998877543
No 122
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=94.60 E-value=0.077 Score=58.64 Aligned_cols=76 Identities=17% Similarity=0.151 Sum_probs=64.6
Q ss_pred CceEEEccCCCCCCHHHHHHHHhcCCc-eeE--EEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003520 96 QTKVYVGKIAPTADSDFVLSVLKVCGT-VKS--WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 172 (813)
Q Consensus 96 ~~tLfVgNLp~~vte~~L~~lF~~~G~-V~~--vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 172 (813)
...|-+.+||+.++-++|..||.-|-. |.. |.++.+ ..|.+.|=|||+|.+.+.|..|....|.....++.|.|--
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 567889999999999999999998864 333 677777 6899999999999999999999988888777788887753
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.49 E-value=0.0046 Score=73.97 Aligned_cols=76 Identities=13% Similarity=0.192 Sum_probs=64.3
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 170 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V 170 (813)
..+++||.||+..+.+.+|...|..+|.+..+.+.....+|+.+|+|+|.|..+.++.+||....+..++...+.|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i 741 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAI 741 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhhe
Confidence 3578999999999999999999999999888887756678999999999999999999999976666665433333
No 124
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=93.98 E-value=0.1 Score=57.97 Aligned_cols=74 Identities=15% Similarity=0.189 Sum_probs=58.2
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccC---CCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003520 97 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP---SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 171 (813)
Q Consensus 97 ~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~---~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~ 171 (813)
..|.|.||.+.++.++++.||+..|.|..+.|+... ......-.|||.|.+...+..|-. |.++.|-++.|.|-
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~ 84 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVR 84 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEE
Confidence 478999999999999999999999999999887643 222345689999999999988876 45555555555554
No 125
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=93.96 E-value=0.13 Score=41.96 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=40.8
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHH
Q 003520 97 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRAL 155 (813)
Q Consensus 97 ~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al 155 (813)
+.|-|.+.+....+. +...|..||.|..+.+.. ...+.||.|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 467788888776644 555888999999988752 2359999999999999985
No 126
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.64 E-value=0.08 Score=64.09 Aligned_cols=79 Identities=9% Similarity=0.086 Sum_probs=66.4
Q ss_pred CCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003520 94 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 173 (813)
Q Consensus 94 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 173 (813)
....|||+|||...+++.+|+..|..+|.|..|.|-+- .-+....||||.|.+...+-.|+..+.|..|....+.+.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP-~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTP-HIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccC-CCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 35789999999999999999999999999999988554 24555679999999999999999888888877556665554
No 127
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.57 E-value=0.065 Score=64.82 Aligned_cols=81 Identities=14% Similarity=0.269 Sum_probs=69.4
Q ss_pred CCCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC--eEEEE
Q 003520 93 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELML 170 (813)
Q Consensus 93 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~G--r~L~V 170 (813)
..+.+.+|||+|..++.-..|...|..||.|..|.+-. | .-|++|.|++...++.|+..|-|..|+| +.|.|
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h----g--q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH----G--QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc----C--CcceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 34578899999999999999999999999999876632 2 2599999999999999999999999994 77999
Q ss_pred EeechhHHH
Q 003520 171 KVDQATREY 179 (813)
Q Consensus 171 ~~a~~~kk~ 179 (813)
.|+...-++
T Consensus 526 dla~~~~~~ 534 (975)
T KOG0112|consen 526 DLASPPGAT 534 (975)
T ss_pred ccccCCCCC
Confidence 988765444
No 128
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.39 E-value=0.19 Score=57.69 Aligned_cols=78 Identities=23% Similarity=0.347 Sum_probs=53.3
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCcee-EEEEeccCC-CCCCcc---eEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVK-SWKRAQYPS-NGTPKG---FGFCEFESAEGVLRALRLLNKFNIDGQELM 169 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~-~vki~~d~~-tGk~kG---fgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~ 169 (813)
-.+.||||+||+++++..|...|..||.+. .|-.-.... ---++| |.|+.|++..++..-|.++. .+...+.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~---~~~~~~y 334 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS---EGEGNYY 334 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh---hcccceE
Confidence 378999999999999999999999999753 443201100 112345 99999999888877665443 3445555
Q ss_pred EEeech
Q 003520 170 LKVDQA 175 (813)
Q Consensus 170 V~~a~~ 175 (813)
+++...
T Consensus 335 f~vss~ 340 (520)
T KOG0129|consen 335 FKVSSP 340 (520)
T ss_pred EEEecC
Confidence 554443
No 129
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=93.37 E-value=0.1 Score=58.29 Aligned_cols=76 Identities=16% Similarity=0.258 Sum_probs=59.1
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCceeEE-EEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCc-eeCCeEEEEEeec
Q 003520 97 TKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF-NIDGQELMLKVDQ 174 (813)
Q Consensus 97 ~tLfVgNLp~~vte~~L~~lF~~~G~V~~v-ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~-~i~Gr~L~V~~a~ 174 (813)
..+|+|||++.++..+|..+|...-.-.+- .++.. ||+||.+.+...|.+|+..|+|. .+.|+.+.|....
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~-------gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS-------GYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeec-------ceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 468999999999999999999854211111 12222 89999999999999999999985 6789999998776
Q ss_pred hhHHH
Q 003520 175 ATREY 179 (813)
Q Consensus 175 ~~kk~ 179 (813)
..+..
T Consensus 75 ~kkqr 79 (584)
T KOG2193|consen 75 PKKQR 79 (584)
T ss_pred hHHHH
Confidence 65443
No 130
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=93.18 E-value=0.4 Score=48.51 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=57.5
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 164 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~ 164 (813)
....|.|.+||+..++.+|+..+...|.|....+.+| |+|.|+|...++..-||..|....+.
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 4578999999999999999999999999999999888 69999999999999999999876654
No 131
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.79 E-value=2 Score=46.64 Aligned_cols=69 Identities=26% Similarity=0.334 Sum_probs=50.0
Q ss_pred EEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeechh
Q 003520 99 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 176 (813)
Q Consensus 99 LfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~~ 176 (813)
|-|-+.++.. ...|..+|.+||.|+..... ....|-+|.|.+..+|.+||.. ||..|+|.. .|.+..++
T Consensus 200 VTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk-ng~ii~g~v-miGVkpCt 268 (350)
T KOG4285|consen 200 VTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDV-MIGVKPCT 268 (350)
T ss_pred EEEeccCccc-hhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhh-cCeeeccce-EEeeeecC
Confidence 3444566553 35777899999999876432 3335999999999999999995 999998754 34555544
No 132
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=92.23 E-value=0.14 Score=54.27 Aligned_cols=63 Identities=19% Similarity=0.305 Sum_probs=57.6
Q ss_pred CceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhC
Q 003520 96 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 159 (813)
Q Consensus 96 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Ln 159 (813)
...|||.||+..++.+.|...|+.||.|....++.| ..|++.+=|+|.|...-.+..|+..++
T Consensus 31 ~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 31 HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred cceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhc
Confidence 378999999999999999999999999998877777 689999999999999999999998774
No 133
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.08 E-value=0.38 Score=51.76 Aligned_cols=63 Identities=21% Similarity=0.113 Sum_probs=49.7
Q ss_pred HHHHHHhcCCceeEEEEeccCCCCC-CcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 003520 112 FVLSVLKVCGTVKSWKRAQYPSNGT-PKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 174 (813)
Q Consensus 112 ~L~~lF~~~G~V~~vki~~d~~tGk-~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 174 (813)
++..-..+||.|..|-|.-.+..-. -.---||+|...++|.+|+-.|||..|+|+.+...|-.
T Consensus 302 e~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 302 ETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 5667778999999998766642111 12357999999999999999999999999998877643
No 134
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=91.99 E-value=0.42 Score=52.96 Aligned_cols=73 Identities=23% Similarity=0.182 Sum_probs=60.6
Q ss_pred EccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEEeechhHH
Q 003520 101 VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID--GQELMLKVDQATRE 178 (813)
Q Consensus 101 VgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~--Gr~L~V~~a~~~kk 178 (813)
|-|--+.+|-+-|..+...+|+|.++.|... +|. -|.|+|++.+.|++|...|||..|- =-.|+|.+|..++-
T Consensus 127 IlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred eecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccccccccceeEEEEecCccee
Confidence 4455568999999999999999999988764 554 6899999999999999999999887 35788888877643
No 135
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=91.70 E-value=0.31 Score=54.07 Aligned_cols=78 Identities=23% Similarity=0.258 Sum_probs=59.4
Q ss_pred CceEEEccCCCCCCHHHHHHHHhcC----CceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003520 96 QTKVYVGKIAPTADSDFVLSVLKVC----GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 171 (813)
Q Consensus 96 ~~tLfVgNLp~~vte~~L~~lF~~~----G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~ 171 (813)
...|-+.+||++|+..++..||..- |.+..+-+++. .+|+..|=|||.|...+.|..||.. |...|+
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iG------- 231 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQNIG------- 231 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHHHh-------
Confidence 4556778999999999999999732 34455666665 4899999999999999999999975 433332
Q ss_pred eechhHHHHHHHHHhh
Q 003520 172 VDQATREYLERYVDKK 187 (813)
Q Consensus 172 ~a~~~kk~le~~k~kk 187 (813)
+.|++-|+...
T Consensus 232 -----qRYIElFRSTa 242 (508)
T KOG1365|consen 232 -----QRYIELFRSTA 242 (508)
T ss_pred -----HHHHHHHHHhH
Confidence 45777777655
No 136
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=90.20 E-value=2.9 Score=53.11 Aligned_cols=21 Identities=14% Similarity=0.242 Sum_probs=10.7
Q ss_pred CCCCccchhcccccccccchh
Q 003520 711 IPKTKEELFSYEINWAVYDKH 731 (813)
Q Consensus 711 ip~~k~~lf~~~i~w~~~~~~ 731 (813)
|..-|..+++-.++=..|.+.
T Consensus 874 ~~~~~~~~~~~~~~~~~~~~~ 894 (1021)
T PTZ00266 874 INAKKASIYNNTCDEGTLSKK 894 (1021)
T ss_pred hhhhhhhhhhhcccccccccc
Confidence 444555565555555555443
No 137
>PTZ00121 MAEBL; Provisional
Probab=88.78 E-value=15 Score=47.57 Aligned_cols=24 Identities=13% Similarity=-0.004 Sum_probs=10.1
Q ss_pred CCCCcc-eEEEEeCCHHHHHHHHHH
Q 003520 134 NGTPKG-FGFCEFESAEGVLRALRL 157 (813)
Q Consensus 134 tGk~kG-fgFVeF~~~e~A~~Al~~ 157 (813)
||.++. +.-+.+.+......|+..
T Consensus 928 tG~Cksli~k~~~~~~~~f~eC~e~ 952 (2084)
T PTZ00121 928 TGKCKSLIDEANEVGINKFGGCLEY 952 (2084)
T ss_pred CCcccccccccccccchhHHHHHHH
Confidence 444443 333333444444455443
No 138
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=88.74 E-value=1.7 Score=42.47 Aligned_cols=74 Identities=18% Similarity=0.240 Sum_probs=56.7
Q ss_pred CCCCceEEEccCCCCCCHH----HHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003520 93 EKPQTKVYVGKIAPTADSD----FVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 168 (813)
Q Consensus 93 ~~~~~tLfVgNLp~~vte~----~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L 168 (813)
+++-.||.|.=|..++... .+...++.||+|.++... |+ .-|.|.|.+..+|-.|+.+++. ...|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----Gr--qsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----GR--QSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----CC--ceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 4467788888776655442 555667899999999763 22 4789999999999999999876 5668888
Q ss_pred EEEeec
Q 003520 169 MLKVDQ 174 (813)
Q Consensus 169 ~V~~a~ 174 (813)
...|-+
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 888754
No 139
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=87.52 E-value=1.4 Score=53.43 Aligned_cols=76 Identities=18% Similarity=0.151 Sum_probs=62.6
Q ss_pred CceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEEee
Q 003520 96 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID--GQELMLKVD 173 (813)
Q Consensus 96 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~--Gr~L~V~~a 173 (813)
..+.++.|.+-..+-..|..+|+.||.|.+....++- ..+.|.|.+.+.|..|+.+|+|..+- |-+.+|.++
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 4456667777788889999999999999988766653 48999999999999999999998654 778888888
Q ss_pred chhH
Q 003520 174 QATR 177 (813)
Q Consensus 174 ~~~k 177 (813)
....
T Consensus 372 k~~~ 375 (1007)
T KOG4574|consen 372 KTLP 375 (1007)
T ss_pred cccc
Confidence 6553
No 140
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=86.91 E-value=0.36 Score=51.19 Aligned_cols=64 Identities=20% Similarity=0.225 Sum_probs=52.2
Q ss_pred HHHHHHh-cCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeechh
Q 003520 112 FVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 176 (813)
Q Consensus 112 ~L~~lF~-~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~~ 176 (813)
+|...|. +||.|..+.|..+. .--..|-.+|.|...++|.+|+..|||-.|.|++|...+..-+
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 3444444 99999999776653 3456688999999999999999999999999999999887654
No 141
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=86.71 E-value=0.3 Score=53.66 Aligned_cols=87 Identities=21% Similarity=0.305 Sum_probs=63.7
Q ss_pred CceEEEccCCCCCCHHHH---HHHHhcCCceeEEEEeccCC----CCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003520 96 QTKVYVGKIAPTADSDFV---LSVLKVCGTVKSWKRAQYPS----NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 168 (813)
Q Consensus 96 ~~tLfVgNLp~~vte~~L---~~lF~~~G~V~~vki~~d~~----tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L 168 (813)
..-+||-+|+..+.++.+ ...|+.||.|..+.+..++. .|.+ .-++|+|...++|..||...+|+.++|+.|
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 356888889887766533 36888999999998877651 2222 238999999999999999999999999995
Q ss_pred EEEeechhHHHHHHHHH
Q 003520 169 MLKVDQATREYLERYVD 185 (813)
Q Consensus 169 ~V~~a~~~kk~le~~k~ 185 (813)
+..+ .+.+|-..|..
T Consensus 156 ka~~--gttkycs~~l~ 170 (327)
T KOG2068|consen 156 KASL--GTTKYCSFYLR 170 (327)
T ss_pred HHhh--CCCcchhHHhh
Confidence 5544 44445444443
No 142
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=85.47 E-value=6.9 Score=45.80 Aligned_cols=70 Identities=23% Similarity=0.285 Sum_probs=56.2
Q ss_pred CCCceEEEccCCCCCCHHHHHHHHh--cCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhC--CceeCCeEEE
Q 003520 94 KPQTKVYVGKIAPTADSDFVLSVLK--VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELM 169 (813)
Q Consensus 94 ~~~~tLfVgNLp~~vte~~L~~lF~--~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Ln--g~~i~Gr~L~ 169 (813)
...|.|++.-||.++..+.++.||. .|-++.+|.+..+- -=||+|++..+|+.|...|. -..|.|+.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 3467888999999999999999998 58999999987652 34899999999999987763 2356666655
Q ss_pred E
Q 003520 170 L 170 (813)
Q Consensus 170 V 170 (813)
.
T Consensus 246 A 246 (684)
T KOG2591|consen 246 A 246 (684)
T ss_pred h
Confidence 4
No 143
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=84.94 E-value=3.8 Score=34.67 Aligned_cols=55 Identities=15% Similarity=0.039 Sum_probs=44.3
Q ss_pred CceEEEccCCCCCCHHHHHHHHhcC---CceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHh
Q 003520 96 QTKVYVGKIAPTADSDFVLSVLKVC---GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 158 (813)
Q Consensus 96 ~~tLfVgNLp~~vte~~L~~lF~~~---G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~L 158 (813)
...|+|.++. .++..+|..+|..| .....+.++-|. -|=|.|.+...|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4579999986 57788999999988 235577888773 5778999999999999765
No 144
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=84.90 E-value=34 Score=36.93 Aligned_cols=67 Identities=21% Similarity=0.373 Sum_probs=42.3
Q ss_pred CCceEEEccCCCC------------CCHHHHHHHHhcCCceeEEEEec-cC----CCCCC-----cceEE---------E
Q 003520 95 PQTKVYVGKIAPT------------ADSDFVLSVLKVCGTVKSWKRAQ-YP----SNGTP-----KGFGF---------C 143 (813)
Q Consensus 95 ~~~tLfVgNLp~~------------vte~~L~~lF~~~G~V~~vki~~-d~----~tGk~-----kGfgF---------V 143 (813)
-+.|||+.+||.. -++.-|+..|..||.|..|.|+. || .+|+. .|||| |
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 4568888888742 45678999999999999987643 22 34444 34543 3
Q ss_pred EeCCHHHHHHHHHHhCCc
Q 003520 144 EFESAEGVLRALRLLNKF 161 (813)
Q Consensus 144 eF~~~e~A~~Al~~Lng~ 161 (813)
.|........|+..|.|.
T Consensus 228 qfmeykgfa~amdalr~~ 245 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGM 245 (445)
T ss_pred HHHHHHhHHHHHHHHhcc
Confidence 344444445555555554
No 145
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=84.73 E-value=2.4 Score=43.56 Aligned_cols=61 Identities=20% Similarity=0.141 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEEeechh
Q 003520 110 SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELMLKVDQAT 176 (813)
Q Consensus 110 e~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Ln--g~~i~Gr~L~V~~a~~~ 176 (813)
...|+.+|..|+.+..|..... -+=..|.|.+.+.|..|...|+ +..|.|..|+|-|+..+
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred HHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 3689999999999999987654 2457899999999999999999 99999999999988544
No 146
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=84.04 E-value=3.3 Score=37.10 Aligned_cols=54 Identities=7% Similarity=0.088 Sum_probs=40.5
Q ss_pred eEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhC
Q 003520 98 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 159 (813)
Q Consensus 98 tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Ln 159 (813)
.||--..|......+|.++|+.||.| .|..+.+ .-|||...+.+.|..|+..++
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I-~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQI-YVSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCE-EEEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcE-EEEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 34444489999999999999999987 4555555 379999999999999998875
No 147
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=82.49 E-value=2.5 Score=49.32 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=46.6
Q ss_pred CCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC----CeEEEEEeechh--HHHHHHHHH
Q 003520 120 CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID----GQELMLKVDQAT--REYLERYVD 185 (813)
Q Consensus 120 ~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~----Gr~L~V~~a~~~--kk~le~~k~ 185 (813)
.|.--.+.++.|-.+-...|||||.|.+++.+..+.+++||+... .+.+.+.||.-. ...+..++.
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQGk~~Li~hFqn 484 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQGKEALIEHFQN 484 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhchHHHHHHhhc
Confidence 455555666666556667899999999999999999999998543 455666666533 334555544
No 148
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=81.96 E-value=10 Score=44.40 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=13.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccCCCCCcc
Q 003520 270 PLPPPPPQTTADGSGISNSELPAKARDGDSDV 301 (813)
Q Consensus 270 ~~~~~~~~~~~~g~~~~~~~~~~~~r~~~~~~ 301 (813)
|.++..+..+..|+.+....+.+....+++.+
T Consensus 549 pGpsnRsR~tksgsRG~ertvvmDkskg~pvi 580 (940)
T KOG4661|consen 549 PGPSNRSRSTKSGSRGKERTVVMDKSKGDPVI 580 (940)
T ss_pred CCccccccccccCCCccceeeeeccCCCCcee
Confidence 33333334444444444444444444444433
No 149
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=80.05 E-value=1.3 Score=48.51 Aligned_cols=82 Identities=12% Similarity=0.109 Sum_probs=67.7
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 174 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 174 (813)
..+++|||++.+.+.+.+...+|..+|.+..+.+........++||+.+.|...+.+..||.....+.+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 47899999999999999999999999998888877766788999999999999999999998644456666666555544
Q ss_pred hh
Q 003520 175 AT 176 (813)
Q Consensus 175 ~~ 176 (813)
..
T Consensus 167 ~~ 168 (285)
T KOG4210|consen 167 RR 168 (285)
T ss_pred cc
Confidence 43
No 150
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=79.39 E-value=7.7 Score=33.57 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHhcCCce-----eEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003520 106 PTADSDFVLSVLKVCGTV-----KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 173 (813)
Q Consensus 106 ~~vte~~L~~lF~~~G~V-----~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 173 (813)
..++..+|..+|...+.| -.+.|..+ |.||+-.. ..|..++..|++..+.|+.|.|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 367778888888876544 45666443 99998875 4788999999999999999999764
No 151
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=79.04 E-value=2.6 Score=42.92 Aligned_cols=81 Identities=12% Similarity=0.128 Sum_probs=51.3
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhc-CCceeEEEEec---cCCCC--CCcceEEEEeCCHHHHHHHHHHhCCceeC---C
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKV-CGTVKSWKRAQ---YPSNG--TPKGFGFCEFESAEGVLRALRLLNKFNID---G 165 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~-~G~V~~vki~~---d~~tG--k~kGfgFVeF~~~e~A~~Al~~Lng~~i~---G 165 (813)
....|.|.+||+++|++.+...++. +|....|..+. ...+. ....-|+|.|.+.+.+..-+..++|+.|- |
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4568999999999999999887776 67664444332 11111 12356899999999999999999998765 2
Q ss_pred --eEEEEEeech
Q 003520 166 --QELMLKVDQA 175 (813)
Q Consensus 166 --r~L~V~~a~~ 175 (813)
....|.+|..
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 3456777766
No 152
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=78.93 E-value=2.9 Score=30.55 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHH
Q 003520 769 KASQMLELLQTILDDEAEMFVLKM 792 (813)
Q Consensus 769 ~p~~l~~~l~~~ld~~a~~fv~~l 792 (813)
.-..|++++..+|+.+|+.||...
T Consensus 4 ~~D~lLDeId~vLe~NAe~FV~~f 27 (33)
T TIGR03687 4 GVDDLLDEIDGVLESNAEEFVRGF 27 (33)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHH
Confidence 346899999999999999999764
No 153
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=78.51 E-value=1.2 Score=50.92 Aligned_cols=74 Identities=7% Similarity=0.004 Sum_probs=60.1
Q ss_pred CceEEEccCCCCCCH-HHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 003520 96 QTKVYVGKIAPTADS-DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 174 (813)
Q Consensus 96 ~~tLfVgNLp~~vte-~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 174 (813)
.+.|-+.-+++.... ..|...|.+||.|..|.+-.. ---|.|+|.+..+|-.|.. .++..|+++.|+|.|-.
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEec
Confidence 455556666776665 599999999999999987543 2468999999999988877 49999999999999987
Q ss_pred hh
Q 003520 175 AT 176 (813)
Q Consensus 175 ~~ 176 (813)
..
T Consensus 445 ps 446 (526)
T KOG2135|consen 445 PS 446 (526)
T ss_pred CC
Confidence 64
No 154
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=75.75 E-value=20 Score=33.76 Aligned_cols=67 Identities=12% Similarity=0.035 Sum_probs=48.5
Q ss_pred CceEEEccCCCCCCHHHHHHHHhcCC-ceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC
Q 003520 96 QTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 164 (813)
Q Consensus 96 ~~tLfVgNLp~~vte~~L~~lF~~~G-~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~ 164 (813)
...+.+...|+.++-++|..+.+.+- .|..++|+++. .-.+-...+.|.+...|..-...+||..|+
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34445555555666667776666554 56678888762 235567889999999999999999999776
No 155
>PF11517 Nab2: Nuclear abundant poly(A) RNA-bind protein 2 (Nab2); InterPro: IPR021083 Nab2 is a yeast heterogeneous nuclear ribonucleoprotein that modulates poly(A) tail length and mRNA. This is the N-terminal domain of the protein which mediates interactions with the C-terminal globular domain, Myosin-like protein 1 and the mRNA export factor, Gfd1 []. The N-terminal domain of Nab2 shows a structure of a helical fold. The N-terminal domain of Nab2 is thought to mediate protein:protein interactions that facilitate the nuclear export of mRNA []. An essential hydrophobic Phe73 patch on the N-terminal domain is thought to be an important component of the interface between Nab2 and Mlp1 [].; PDB: 3LCN_B 2V75_A 2JPS_A.
Probab=72.50 E-value=18 Score=33.26 Aligned_cols=74 Identities=14% Similarity=0.311 Sum_probs=55.6
Q ss_pred HhhhhhhhHHHHHHhhcCCchhH--HHHHHHHhhhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 003520 733 LHERMRPWISKKITEFLGEEETT--LVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETG 806 (813)
Q Consensus 733 ~~~~l~pwi~kki~e~lG~ee~~--lv~~i~~~l~~~~~p~~l~~~l~~~ld~~a~~fv~~lwrllife~~~~~~g 806 (813)
+.+.||--|.+|...+=.+-|++ +-+||+=++...+++..++.+|...+|.=...++...-.-..|..++...|
T Consensus 8 ~~~nLK~iVaEkL~~l~NFnEDv~YVAEyIvlLisNggs~esivqELssLFD~vs~~~l~~VVQtaF~ale~Lq~G 83 (107)
T PF11517_consen 8 ITENLKVIVAEKLKTLPNFNEDVNYVAEYIVLLISNGGSVESIVQELSSLFDSVSTEALTDVVQTAFFALEALQQG 83 (107)
T ss_dssp HHHHHHHHHHHHHTTSTT--SSHHHHHHHHHHHHHTT--HHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccccCccccHHHHHHHhheeeeCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCC
Confidence 55678899999998886665554 889999999999999999999999999777777777777777777776665
No 156
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=67.87 E-value=14 Score=39.68 Aligned_cols=73 Identities=12% Similarity=0.101 Sum_probs=50.0
Q ss_pred CCCceEEEccCCCCCCHHH-H--HHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 003520 94 KPQTKVYVGKIAPTADSDF-V--LSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 167 (813)
Q Consensus 94 ~~~~tLfVgNLp~~vte~~-L--~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~ 167 (813)
+....+|++|+-..+..+- | ...|+-|-.+...+++.+ .-+...+|+|+.|........+-..-++..++...
T Consensus 94 P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~-~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~ 169 (290)
T KOG0226|consen 94 PAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRD-RPQPIRPEAFESFKASDALLKAETEKEKKKIGKPP 169 (290)
T ss_pred cccccccccccccccCCCCCCcchhhhccchhhhhhhhhhc-CCCccCcccccCcchhhhhhhhccccccccccCcc
Confidence 3455677777776666553 3 677887777777788777 47888899999998766666655544555554444
No 157
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.20 E-value=23 Score=41.95 Aligned_cols=80 Identities=13% Similarity=0.145 Sum_probs=59.4
Q ss_pred CCCCceEEEccCCCC-CCHHHHHHHHhcC----CceeEEEEeccC----------CCCC---------------------
Q 003520 93 EKPQTKVYVGKIAPT-ADSDFVLSVLKVC----GTVKSWKRAQYP----------SNGT--------------------- 136 (813)
Q Consensus 93 ~~~~~tLfVgNLp~~-vte~~L~~lF~~~----G~V~~vki~~d~----------~tGk--------------------- 136 (813)
+...+.|-|.|+.|. +...+|.-+|+.| |.|.+|.|.... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345789999999995 6667999999876 689998765311 1222
Q ss_pred ----------------CcceEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEEe
Q 003520 137 ----------------PKGFGFCEFESAEGVLRALRLLNKFNID--GQELMLKV 172 (813)
Q Consensus 137 ----------------~kGfgFVeF~~~e~A~~Al~~Lng~~i~--Gr~L~V~~ 172 (813)
..-||.|+|.+...|......++|+.|. |..|-+.|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 1247889999999999999999999998 44444443
No 158
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=60.85 E-value=24 Score=30.25 Aligned_cols=55 Identities=11% Similarity=0.080 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003520 107 TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 170 (813)
Q Consensus 107 ~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V 170 (813)
.++-.+++..|..|+-. .|..+ .| || ||.|.+..+|.+|....||..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d-~t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDD-RT----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEec-CC----EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 45667899999999731 23333 23 33 79999999999999999999988877654
No 159
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=60.01 E-value=1.4e+02 Score=36.22 Aligned_cols=6 Identities=33% Similarity=-0.097 Sum_probs=2.4
Q ss_pred HHHHHH
Q 003520 150 GVLRAL 155 (813)
Q Consensus 150 ~A~~Al 155 (813)
.++.|+
T Consensus 84 ~~L~ae 89 (811)
T KOG4364|consen 84 VALLAE 89 (811)
T ss_pred cchhhh
Confidence 344444
No 160
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=55.86 E-value=30 Score=40.76 Aligned_cols=41 Identities=17% Similarity=0.077 Sum_probs=17.3
Q ss_pred HHHHhcCCceeEEEEeccCCCCCCcceEE--EEeCCHHHHHHHH
Q 003520 114 LSVLKVCGTVKSWKRAQYPSNGTPKGFGF--CEFESAEGVLRAL 155 (813)
Q Consensus 114 ~~lF~~~G~V~~vki~~d~~tGk~kGfgF--VeF~~~e~A~~Al 155 (813)
.-+|-..-....|+|+.. -.|.+-|.++ ++..+-.+|..||
T Consensus 295 eGVfP~~tpd~RcRvvNA-Ll~g~~GL~L~p~ec~sW~~avaaL 337 (582)
T PF03276_consen 295 EGVFPTTTPDLRCRVVNA-LLGGHLGLALTPNECGSWASAVAAL 337 (582)
T ss_pred cccccCCCccHHHHHHHH-HhcCCCccccCccccccHHHHHHHH
Confidence 333433334445555443 2333333332 3444455555555
No 161
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=53.83 E-value=36 Score=39.24 Aligned_cols=66 Identities=11% Similarity=0.089 Sum_probs=56.3
Q ss_pred CceEEEccCCCCCCHHHHHHHHhcC-CceeEEEEeccCCCCCCc-ceEEEEeCCHHHHHHHHHHhCCceeC
Q 003520 96 QTKVYVGKIAPTADSDFVLSVLKVC-GTVKSWKRAQYPSNGTPK-GFGFCEFESAEGVLRALRLLNKFNID 164 (813)
Q Consensus 96 ~~tLfVgNLp~~vte~~L~~lF~~~-G~V~~vki~~d~~tGk~k-GfgFVeF~~~e~A~~Al~~Lng~~i~ 164 (813)
++.|+|-.+|-.++-.+|..|+..| -.|..++|+++ |.+. -...+.|.+..+|..-...+||..|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd---~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRD---GMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeec---CCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 7899999999999999999998865 46889999986 3333 34779999999999999999999876
No 162
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=49.22 E-value=15 Score=46.41 Aligned_cols=33 Identities=9% Similarity=0.126 Sum_probs=24.5
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEE
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWK 127 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vk 127 (813)
...+++|-.+--.+..+.|+.+.+.||...++.
T Consensus 71 kak~~~v~t~ka~~PpeHLrki~~~~sdm~s~~ 103 (2365)
T COG5178 71 KAKTLHVLTLKAPIPPEHLRKIQSPCSDMPSVL 103 (2365)
T ss_pred hhhheeeeccCCCCCHHHHHhhhCccccchhhh
Confidence 456777877777788888888888887665543
No 163
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=47.21 E-value=3.6e+02 Score=28.26 Aligned_cols=10 Identities=50% Similarity=0.637 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 003520 470 AVAKRRAEEE 479 (813)
Q Consensus 470 ~e~~~~~~e~ 479 (813)
++.+++.+++
T Consensus 163 eeekr~~eE~ 172 (216)
T PF11600_consen 163 EEEKRKKEEE 172 (216)
T ss_pred HHHHHhhHHH
Confidence 3334444444
No 164
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=46.58 E-value=23 Score=42.59 Aligned_cols=63 Identities=14% Similarity=0.359 Sum_probs=52.0
Q ss_pred hhhhhhHHHHHHhhcCCchhHHHHHHHHhhhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 003520 735 ERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLI 797 (813)
Q Consensus 735 ~~l~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~ld~~a~~fv~~lwrlli 797 (813)
.+++--+.....+|+|-.-+.++..|+..|........=+.+|.-||.++.+.||..||-.|-
T Consensus 22 ~k~k~~~kddl~~~~g~~t~~~~~~~f~~~~r~~~~~~ea~e~~~~~ed~~~~~~a~~~~~~~ 84 (681)
T KOG3702|consen 22 AKLKEMVKDDLKEYMGDYTDDILVEYFIVLLRNGRRKEEANELKIFLEDDSDSFVAWLWDHLA 84 (681)
T ss_pred hhhhhhhhhhHHhhcCCchhhhhhHHHHHHHhccccccchhhhhhhhhhhhhhhhhhhhhhHH
Confidence 578888999999999998777777777777655555555559999999999999999999886
No 165
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=46.30 E-value=1.4e+02 Score=35.06 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=12.4
Q ss_pred eEEEccCCCCCCHHHHHHHHhcCCceeE
Q 003520 98 KVYVGKIAPTADSDFVLSVLKVCGTVKS 125 (813)
Q Consensus 98 tLfVgNLp~~vte~~L~~lF~~~G~V~~ 125 (813)
.+-...|+..-....|..-...-|.+..
T Consensus 483 ~ve~t~~~~~dgR~~LmaqIRqG~~Lk~ 510 (569)
T KOG3671|consen 483 KVETTALSSGDGRDALMAQIRQGGQLKK 510 (569)
T ss_pred ceeeccCcCcccHHHHHHHHHhcccccc
Confidence 3444445544444455444444344433
No 166
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=45.47 E-value=5.3 Score=41.81 Aligned_cols=74 Identities=16% Similarity=0.348 Sum_probs=62.1
Q ss_pred CCCceEEEcc----CCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003520 94 KPQTKVYVGK----IAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 168 (813)
Q Consensus 94 ~~~~tLfVgN----Lp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L 168 (813)
....+++.|| |...++++.+...|+..|.+..+++.++ .+|..+.|+|++|.-....-.++....+..+--+++
T Consensus 78 e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~-~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~ 155 (267)
T KOG4454|consen 78 EEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTD-NDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKV 155 (267)
T ss_pred hhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccc-ccCCccCccchhhhhhhcCcHHhhhhcccCcCCCCc
Confidence 3467888998 8889999999999999999999999888 479999999999998888888888777765544443
No 167
>PF05639 Pup: Pup-like protein; InterPro: IPR008515 This family consists of several short bacterial proteins formely known as (DUF797). It was recently shown that Mycobacterium tuberculosis contains a small protein, Pup (Rv2111c), that is covalently conjugated to the e-NH2 groups of lysines on several target proteins (pupylation) such as the malonyl CoA acyl carrier protein (FabD) []. Pupylation of FabD was shown to result in its recruitment to the mycobacterial proteasome and subsequent degradation analogous to eukaryotic ubiquitin-conjugated proteins. Searches recovered Pup orthologs in all major actinobacteria lineages including the basal bifidobacteria and also sporadically in certain other bacterial lineages []. The Pup proteins were all between 50-90 residues in length and a multiple alignment shows that they all contain a conserved motif with a G [EQ] signature at the C terminus. Thus, all of them are suitable for conjugation via the terminal glutamate or the deamidated glutamine (as shown in the case of the Mycobacterium Pup []). The conserved globular core of Pup is predicted to form a bihelical unit with the extreme C-terminal 6-7 residues forming a tail in the extended conformation. Thus, Pup is structurally unrelated to the ubiquitin fold and has convergently evolved the function of protein modifier. ; PDB: 3M91_D 3M9D_I.
Probab=44.62 E-value=7.7 Score=33.45 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=14.9
Q ss_pred CCHHHHHHHHHHhhhHHHHHHHHHH
Q 003520 768 VKASQMLELLQTILDDEAEMFVLKM 792 (813)
Q Consensus 768 ~~p~~l~~~l~~~ld~~a~~fv~~l 792 (813)
.+-..||++|..||..+|+.||..+
T Consensus 39 ~~vD~lLDeID~vLE~NAeeFVr~f 63 (69)
T PF05639_consen 39 DDVDDLLDEIDSVLETNAEEFVRSF 63 (69)
T ss_dssp CCHHHHHHHHTTTSSSC--------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999754
No 168
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=44.00 E-value=69 Score=37.46 Aligned_cols=25 Identities=8% Similarity=0.162 Sum_probs=13.9
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhc
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKV 119 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~ 119 (813)
+..++|-.-=+-.++...|..+|..
T Consensus 305 ~~~t~W~s~D~~~~D~~r~~~LFEs 329 (817)
T KOG1925|consen 305 PCATLWASLDPVSVDTARLEHLFES 329 (817)
T ss_pred ccchhhhccCcceecHHHHHHHHHH
Confidence 3444443322334556688999963
No 169
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=36.97 E-value=16 Score=44.84 Aligned_cols=6 Identities=33% Similarity=1.126 Sum_probs=4.4
Q ss_pred ceEEEE
Q 003520 139 GFGFCE 144 (813)
Q Consensus 139 GfgFVe 144 (813)
-||||.
T Consensus 159 tygfVD 164 (1194)
T KOG4246|consen 159 TYGFVD 164 (1194)
T ss_pred cccccc
Confidence 588875
No 170
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=34.53 E-value=35 Score=43.42 Aligned_cols=10 Identities=40% Similarity=0.936 Sum_probs=4.6
Q ss_pred hhHHHHHHHH
Q 003520 753 ETTLVDYIVS 762 (813)
Q Consensus 753 e~~lv~~i~~ 762 (813)
|+-|.|||..
T Consensus 1030 DpnlAdYi~a 1039 (2365)
T COG5178 1030 DPNLADYIIA 1039 (2365)
T ss_pred CchHHHHHhh
Confidence 4444455443
No 171
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=34.41 E-value=33 Score=35.11 Aligned_cols=75 Identities=15% Similarity=0.108 Sum_probs=52.5
Q ss_pred CceEEEccCCCCCCHH-----HHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCe-EEE
Q 003520 96 QTKVYVGKIAPTADSD-----FVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-ELM 169 (813)
Q Consensus 96 ~~tLfVgNLp~~vte~-----~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr-~L~ 169 (813)
.+++++.+|+..+-.+ ....+|..|-......+++. .++--|.|.++..|..|...+++..|.|. .|.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 4668888888754432 44456665555544444432 24455799999999999999999999998 777
Q ss_pred EEeechh
Q 003520 170 LKVDQAT 176 (813)
Q Consensus 170 V~~a~~~ 176 (813)
.-+++..
T Consensus 84 ~yfaQ~~ 90 (193)
T KOG4019|consen 84 LYFAQPG 90 (193)
T ss_pred EEEccCC
Confidence 7777654
No 172
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=33.36 E-value=46 Score=38.68 Aligned_cols=63 Identities=19% Similarity=0.399 Sum_probs=44.6
Q ss_pred hhhhhhHHHHHHhhcCCchhHHHHHHHHhhhcCC----CHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 003520 735 ERMRPWISKKITEFLGEEETTLVDYIVSSTQDHV----KASQMLELLQTILDDEAEMFVLKMWRMLI 797 (813)
Q Consensus 735 ~~l~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~----~p~~l~~~l~~~ld~~a~~fv~~lwrlli 797 (813)
+.|+-|...-..=+---.-..|-.||+-.|++-. =+..++++|..||.+++..||.||...|-
T Consensus 7 d~Lk~wlsd~lePi~Dadpsala~yvlal~kkdkse~elk~~~~~ql~vfl~~et~pfv~K~fda~~ 73 (526)
T KOG2135|consen 7 DALKDWLSDALEPICDADPSALAKYVLALLKKDKSEKELKALCIEQLDVFLRQETIPFVDKLFDALR 73 (526)
T ss_pred HHHHHHHhhhccCcccCChHHHHHHHHHHhhcCCCchhhhhhhHHhcchhhhcccchHHHHHHHhhc
Confidence 3466666554333333333458899999998644 34667799999999999999999986553
No 173
>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains. This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=33.04 E-value=82 Score=28.07 Aligned_cols=48 Identities=19% Similarity=0.305 Sum_probs=38.7
Q ss_pred HHHHHhhcCCchhHHHHHHHHhhhcCC---CHHHHHHHHHHhhhHHHHHHHH
Q 003520 742 SKKITEFLGEEETTLVDYIVSSTQDHV---KASQMLELLQTILDDEAEMFVL 790 (813)
Q Consensus 742 ~kki~e~lG~ee~~lv~~i~~~l~~~~---~p~~l~~~l~~~ld~~a~~fv~ 790 (813)
..||..+|| .|++.-++++..|+... +-..|+..|.++|..++..=+.
T Consensus 9 ~~Kvd~iL~-~dp~~Ke~l~~aLk~Ya~~k~vd~l~~aL~~~L~~e~~~~Ll 59 (80)
T cd07354 9 SRKVDAILG-DDPVKKEQVFAALKQYAADKNVDCLVWALCGLLQTEAHKKLL 59 (80)
T ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhCcHHHHHHH
Confidence 578999999 68989999999997543 6678999999999987765433
No 174
>PF13797 Post_transc_reg: Post-transcriptional regulator
Probab=32.46 E-value=1e+02 Score=27.84 Aligned_cols=58 Identities=26% Similarity=0.414 Sum_probs=47.4
Q ss_pred HhhhhhhhHHHHHHhh--cCC---chhHHHHHHHHhhhcCCCHHHHHHHHHHhhhHHHHHHHH
Q 003520 733 LHERMRPWISKKITEF--LGE---EETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVL 790 (813)
Q Consensus 733 ~~~~l~pwi~kki~e~--lG~---ee~~lv~~i~~~l~~~~~p~~l~~~l~~~ld~~a~~fv~ 790 (813)
..+.|+|||..|+.|+ ||. ..+.|=+|+++..-++..|..|-+-+..||-=.+-.||.
T Consensus 5 ~~~~v~p~l~sK~eEf~~lGY~~vt~~dlw~yl~~~~WK~~~~~~l~e~V~DIlsl~~~~~m~ 67 (87)
T PF13797_consen 5 WREQVEPALQSKAEEFHLLGYESVTEEDLWSYLTEKKWKKKKPPRLHELVNDILSLKPNDYMN 67 (87)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHhccCCCcCHHHHHHHHHcCCHHHHHH
Confidence 3467899999999986 554 578899999999988888888888888888777777764
No 175
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=31.79 E-value=63 Score=29.20 Aligned_cols=49 Identities=20% Similarity=0.301 Sum_probs=34.1
Q ss_pred CceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCC
Q 003520 96 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFES 147 (813)
Q Consensus 96 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~ 147 (813)
..-|||||++..+-+.-...+...++.-.-+ ++.. ..+ ..||+|-++.+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~-m~~~-~~n-eqG~~~~t~G~ 73 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAV-MVWS-DNN-EQGFDFRTLGD 73 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEE-EEEc-cCC-CCCEEEEEeCC
Confidence 4569999999999888777777765543333 3333 233 78999998844
No 176
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=31.69 E-value=45 Score=33.98 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=47.5
Q ss_pred CCCCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHH
Q 003520 93 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 157 (813)
Q Consensus 93 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~ 157 (813)
......+++++++..++...+..+|..+|.+....+...........+.|+.+.....+..++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNSR 286 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhcc
Confidence 44578999999999999999999999999997777766543444555666555555555554443
No 177
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.22 E-value=40 Score=36.45 Aligned_cols=56 Identities=21% Similarity=0.458 Sum_probs=41.7
Q ss_pred HHHHHHhhcCCchhHHHHHHHHhhhcCCCHHHHHHHHHHh-hhHH--HHHHHHHHHHHH
Q 003520 741 ISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTI-LDDE--AEMFVLKMWRML 796 (813)
Q Consensus 741 i~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~-ld~~--a~~fv~~lwrll 796 (813)
|+....-|||+.|+.|..-|.+.-++..+|.++.+.|... |.+= ...||..||-.+
T Consensus 264 indllesymGirD~eLA~~i~e~~~~~~n~~efaeaideseL~~F~FpDefVfdvWg~I 322 (334)
T KOG3938|consen 264 INDLLESYMGIRDTELASTIWETGKDKENPDEFAEAIDESELGDFAFPDEFVFDVWGAI 322 (334)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHhccccCCHHHHHHHhhhcccccccCCcceeeehhhhh
Confidence 4455567899999999999998888888888877776655 4422 457888999654
No 178
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=29.94 E-value=23 Score=43.50 Aligned_cols=12 Identities=8% Similarity=0.407 Sum_probs=7.5
Q ss_pred CCCceEEEccCC
Q 003520 94 KPQTKVYVGKIA 105 (813)
Q Consensus 94 ~~~~tLfVgNLp 105 (813)
......|+|++.
T Consensus 143 ~~~qR~f~gvvt 154 (1194)
T KOG4246|consen 143 NEPQRRFAGVVT 154 (1194)
T ss_pred CCcceeeehhhh
Confidence 345677777654
No 179
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=29.74 E-value=9.4 Score=44.76 Aligned_cols=71 Identities=11% Similarity=0.096 Sum_probs=55.6
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 165 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~G 165 (813)
..|+|||.||+++++-..|..++..+-.+..+.+..........-+++|+|.---...-|+-+||+..+..
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 36889999999999999999999988777777665443334455688999998888888888888875543
No 180
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.82 E-value=1.9e+02 Score=35.04 Aligned_cols=12 Identities=17% Similarity=0.387 Sum_probs=5.7
Q ss_pred ceeCCeEEEEEe
Q 003520 161 FNIDGQELMLKV 172 (813)
Q Consensus 161 ~~i~Gr~L~V~~ 172 (813)
+.+.|..|.+.+
T Consensus 496 ~~~~~~~l~l~~ 507 (585)
T PRK14950 496 VSVEKNTLTLSF 507 (585)
T ss_pred eeecCCEEEEec
Confidence 344455555544
No 181
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.27 E-value=1.8e+02 Score=36.58 Aligned_cols=7 Identities=14% Similarity=0.131 Sum_probs=3.5
Q ss_pred ccCCCCh
Q 003520 598 VPIDYST 604 (813)
Q Consensus 598 vpl~y~~ 604 (813)
|-|.|++
T Consensus 702 v~fkhDd 708 (1007)
T KOG1984|consen 702 VEFKHDD 708 (1007)
T ss_pred EEEeccc
Confidence 4455554
No 182
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=26.88 E-value=1.7e+02 Score=24.98 Aligned_cols=51 Identities=12% Similarity=0.319 Sum_probs=40.6
Q ss_pred hhHHHHHHhhcCCchhHHHHHHHHhhhcCCCHHHHHHH-HHHhhhHHHHHHHHHHHH
Q 003520 739 PWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLEL-LQTILDDEAEMFVLKMWR 794 (813)
Q Consensus 739 pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~-l~~~ld~~a~~fv~~lwr 794 (813)
+++..-+.-++....+.+..++-..+....++..++.+ |.++|.+ |..+|.
T Consensus 3 ~~~~~l~~al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~-----iG~~w~ 54 (79)
T PF02607_consen 3 ELIERLLDALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEE-----IGELWE 54 (79)
T ss_dssp HHHHHHHHHHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-----HHHHHh
Confidence 56677777788888888999999999887899999987 8888876 566675
No 183
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=26.69 E-value=41 Score=37.26 Aligned_cols=19 Identities=11% Similarity=0.246 Sum_probs=12.7
Q ss_pred EEEEEeechhHHHHHHHHH
Q 003520 167 ELMLKVDQATREYLERYVD 185 (813)
Q Consensus 167 ~L~V~~a~~~kk~le~~k~ 185 (813)
.+.+.+.++...++..|..
T Consensus 162 FmYiRYtqpp~dLw~WyEp 180 (453)
T KOG2888|consen 162 FMYIRYTQPPADLWDWYEP 180 (453)
T ss_pred eeEEeecCChhHHHHHhhh
Confidence 4567777777777766654
No 184
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=26.38 E-value=3.5e+02 Score=32.07 Aligned_cols=6 Identities=33% Similarity=0.507 Sum_probs=2.3
Q ss_pred CceeEE
Q 003520 121 GTVKSW 126 (813)
Q Consensus 121 G~V~~v 126 (813)
|.+..+
T Consensus 479 ~ql~~v 484 (569)
T KOG3671|consen 479 GQLKKV 484 (569)
T ss_pred ccccce
Confidence 333333
No 185
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=26.04 E-value=3.5e+02 Score=29.74 Aligned_cols=51 Identities=14% Similarity=0.092 Sum_probs=36.6
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHH
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEG 150 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~ 150 (813)
..+.|||+||+.++.-.+|+..+.+.|.+-- .|.+. .+.|-||+.|.+...
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm-~iswk----g~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPM-SISWK----GHFGKCFLHFGNRKG 379 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCce-eEeee----cCCcceeEecCCccC
Confidence 4567999999999999999999998775421 12111 234678999987543
No 186
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=25.59 E-value=1.8e+02 Score=34.21 Aligned_cols=11 Identities=36% Similarity=0.522 Sum_probs=4.6
Q ss_pred ccCCCChHHHh
Q 003520 598 VPIDYSTEELQ 608 (813)
Q Consensus 598 vpl~y~~e~~~ 608 (813)
||-|-.||-+.
T Consensus 752 ~~~d~~DEImd 762 (817)
T KOG1925|consen 752 LPSDTSDEIMD 762 (817)
T ss_pred CCCChHHHHHH
Confidence 33344454443
No 187
>PF15473 PCNP: PEST, proteolytic signal-containing nuclear protein family
Probab=25.21 E-value=26 Score=34.54 Aligned_cols=18 Identities=33% Similarity=0.713 Sum_probs=14.1
Q ss_pred CccccCCcCCCCCCcchh
Q 003520 572 KRTAVPSVFHVEDDDDAD 589 (813)
Q Consensus 572 kr~~v~~vf~~~dde~~~ 589 (813)
+..+|+.|||.+||+|..
T Consensus 88 ~~~~va~~Fn~d~d~e~e 105 (150)
T PF15473_consen 88 KKLSVAAVFNEDDDSEPE 105 (150)
T ss_pred CcchhhhhhccccccChh
Confidence 467899999998777644
No 188
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=24.96 E-value=3.1e+02 Score=34.01 Aligned_cols=9 Identities=11% Similarity=-0.064 Sum_probs=5.2
Q ss_pred hcCCceeEE
Q 003520 118 KVCGTVKSW 126 (813)
Q Consensus 118 ~~~G~V~~v 126 (813)
-+.|.|..+
T Consensus 1070 ~~~~diIei 1078 (1106)
T KOG0162|consen 1070 FKKGDIIEI 1078 (1106)
T ss_pred ccCCCEEEE
Confidence 345777655
No 189
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=24.93 E-value=2.2e+02 Score=37.07 Aligned_cols=44 Identities=18% Similarity=0.316 Sum_probs=21.8
Q ss_pred hhhhhhHHHhhhh-cCCCCccchhcccccccccchhhHhhhhhhh
Q 003520 697 DNKKLLDAKQLID-MIPKTKEELFSYEINWAVYDKHELHERMRPW 740 (813)
Q Consensus 697 ~~~~~~~~~~l~~-~ip~~k~~lf~~~i~w~~~~~~~~~~~l~pw 740 (813)
|.|+++=-|.+.. +=|..=.-+.+-.-+|++=.-..|..-|+-|
T Consensus 841 edk~~lWekR~yc~~~p~aLPlVL~Sap~W~~~~l~~~y~lL~~W 885 (1639)
T KOG0905|consen 841 EDKDLLWEKRLYCTNEPNALPLVLASAPSWDWGNLMDVYQLLHQW 885 (1639)
T ss_pred hhHHHHHHHhhhhcCCCchhHHHHhcCCCCchhhHHHHHHHHHhc
Confidence 3444444454443 3344444556666667664433344445555
No 190
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=23.49 E-value=98 Score=28.66 Aligned_cols=50 Identities=22% Similarity=0.279 Sum_probs=34.0
Q ss_pred CceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCH
Q 003520 96 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESA 148 (813)
Q Consensus 96 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~ 148 (813)
..-||||+++..+.+.-...+-..||. -++.++.. +....||+|-++.+.
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~~--~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAWA--TNTESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEEc--CCCCCCcEEEecCCC
Confidence 456999999999888766666666654 23333332 334459999988764
No 191
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=23.32 E-value=6.1 Score=44.76 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=61.4
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEEEe-ccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRA-QYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 173 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~-~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 173 (813)
.++.+-|.|||+...++.|..|+..||.|..|-.+ +++.+ ..--|+|...+.+..||..|||..+....+.|.+-
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 36678899999999999999999999999998653 23211 23347899999999999999999999888888753
No 192
>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains. This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain is found in either one or two copies. Harmonin contains a single copy, which is found at its N-terminus and binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network. Whirlin contains two copies of the harmonin_N_like domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Probab=22.59 E-value=2.6e+02 Score=24.88 Aligned_cols=60 Identities=18% Similarity=0.281 Sum_probs=44.7
Q ss_pred hhhHHHHHHhhcCCchhHHHHHHHHhhhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 003520 738 RPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLI 797 (813)
Q Consensus 738 ~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~ld~~a~~fv~~lwrlli 797 (813)
.+=+..++..+|-..|-.-+-+.++.-..+.+-..|+-.|..+||.-|.--+...=|.||
T Consensus 5 ~r~f~~q~~~LL~~~Er~~~~~~L~~Y~~~~~Vd~LV~~L~~vLdtPaK~~Ll~~iR~lI 64 (78)
T cd07347 5 AREFSQQVDHLLTDAEREQVTRALERYHQERNVDDLVRDLYLVLDTPAKLPLLQFLRQVI 64 (78)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCcHhHHHHHHHHHHHc
Confidence 455677888899666655555555666667799999999999999999866555555555
No 193
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=22.43 E-value=48 Score=35.24 Aligned_cols=33 Identities=6% Similarity=0.156 Sum_probs=29.1
Q ss_pred CCceEEEccCCCCCCHHHHHHHHhcCCceeEEE
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWK 127 (813)
Q Consensus 95 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~vk 127 (813)
...+||+-|||..+++..|..+.+.||.+..+-
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 477899999999999999999999999766553
No 194
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=22.36 E-value=4.5e+02 Score=34.49 Aligned_cols=8 Identities=38% Similarity=0.260 Sum_probs=3.1
Q ss_pred cCCCCCCC
Q 003520 13 SAGDSCHA 20 (813)
Q Consensus 13 sag~s~~~ 20 (813)
|.++++..
T Consensus 1449 sp~~s~ts 1456 (1605)
T KOG0260|consen 1449 SPGYSPTS 1456 (1605)
T ss_pred CCCCCCCC
Confidence 33444333
No 195
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=20.30 E-value=3e+02 Score=33.61 Aligned_cols=72 Identities=14% Similarity=0.075 Sum_probs=58.3
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003520 97 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 169 (813)
Q Consensus 97 ~tLfVgNLp~~vte~~L~~lF~~~G~V~~vki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~ 169 (813)
.+||+.|-....+..-+..++..++.+...+++.....+..++-+||+|..+..+..|.. |.+..+....+.
T Consensus 512 p~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s-~p~k~fa~~~~k 583 (681)
T KOG3702|consen 512 PTIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKS-LPNKKFASKCLK 583 (681)
T ss_pred CceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhc-ccccccccccee
Confidence 389999988888888889999999999999988887788888899999999988877765 565555544433
No 196
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=20.29 E-value=3.2e+02 Score=24.94 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=25.9
Q ss_pred HHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHhhhhcccc
Q 003520 772 QMLELLQTILDDE--AEMFVLKMWRMLIFEIKKVETGLAL 809 (813)
Q Consensus 772 ~l~~~l~~~ld~~--a~~fv~~lwrllife~~~~~~g~~~ 809 (813)
+++..+.....+. -..|+..||++||=|+.+.+..++.
T Consensus 52 ~vl~~~~~~a~~~gl~p~~~e~i~~~i~~esir~q~~~~~ 91 (94)
T TIGR01795 52 YQIARLRRLAIDAGLDPEFAEKFLNFIVTEVIKHHERIAD 91 (94)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444443333322 4679999999999999998876654
No 197
>PF08926 DUF1908: Domain of unknown function (DUF1908); InterPro: IPR015022 This domain is found in microtubule-associated serine/threonine-protein kinases. ; GO: 0000287 magnesium ion binding, 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1V9V_A.
Probab=20.10 E-value=2e+02 Score=31.38 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhh-------HHHHHHHHHHHHHHHH
Q 003520 771 SQMLELLQTILD-------DEAEMFVLKMWRMLIF 798 (813)
Q Consensus 771 ~~l~~~l~~~ld-------~~a~~fv~~lwrllif 798 (813)
-+|+++|+..|. -++..||.+|||.|+.
T Consensus 190 ~ElsEnLekLl~ea~erS~~~~~~~~~~lvrklL~ 224 (282)
T PF08926_consen 190 YELSENLEKLLQEAHERSESEEVAFVTQLVRKLLI 224 (282)
T ss_dssp HHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHH
Confidence 467888888887 3467799999998873
Done!