Query 003520
Match_columns 813
No_of_seqs 404 out of 2752
Neff 6.3
Searched_HMMs 29240
Date Tue Mar 26 18:53:00 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003520.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1567-1571//hhsearch_pdb/003520hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v53_A RNA-binding protein 25; 1.0 1 1 266.8 9.9 107 703-809 13-119 (119)
2 3pgw_S U1-70K; protein-RNA com 1.0 1 1 174.5 14.6 84 93-176 99-182 (437)
3 1mp1_A Ser/Arg-related nuclear 1.0 1 1 164.3 8.3 92 713-809 5-98 (111)
4 1x4q_A U4/U6 small nuclear rib 1.0 1 1 142.6 7.2 71 732-802 13-83 (92)
5 3n9u_C Cleavage and polyadenyl 1.0 1 1 130.6 12.5 90 94-185 53-144 (156)
6 4fxv_A ELAV-like protein 1; RN 1.0 1 1 126.2 11.0 81 95-175 18-98 (99)
7 3q2s_C Cleavage and polyadenyl 1.0 1 1 125.2 8.4 82 95-176 67-150 (229)
8 3s8s_A Histone-lysine N-methyl 1.0 1 1 124.4 12.9 86 94-179 4-89 (110)
9 2lxi_A RNA-binding protein 10; 1.0 1 1 122.9 4.4 82 96-177 1-84 (91)
10 3ns6_A Eukaryotic translation 1.0 1 1 121.5 7.4 87 94-180 4-97 (100)
No 1
>3v53_A RNA-binding protein 25; PWI, RNA-binding domain; 2.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=266.76 Aligned_cols=107 Identities=44% Similarity=0.875 Sum_probs=105.2
Q ss_pred HHHHHHHCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 78865311999810000101351102414676433355998877630873368999999852037797899999998543
Q 003520 703 DAKQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILD 782 (813)
Q Consensus 703 ~~~~l~~~ip~~k~~lf~~~i~w~~~~~~~~~~~l~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~ld 782 (813)
++++|+++||++|++||+|+|+|++||.++|.++|+|||++||+||||++|++||+||+++|..|.+|+.|+++|++|||
T Consensus 13 ~~k~li~~IP~~Ke~Lf~~~i~W~~vd~~~i~~~lkPWI~kKI~E~LG~eEd~LVdfI~~~L~~~~~pk~l~~~L~~~LD 92 (119)
T 3v53_A 13 HIKSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLD 92 (119)
T ss_dssp SSHHHHHHSCSSHHHHHHSCCCTTTSCHHHHHHTHHHHHHHHHHHHTC---CHHHHHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99999998899879995363784662288899998889999999992886289999999998848999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 889999999999999999864303221
Q 003520 783 DEAEMFVLKMWRMLIFEIKKVETGLAL 809 (813)
Q Consensus 783 e~a~~fv~klWrllife~~~~~~g~~~ 809 (813)
++|+.||.+||||||||+++++.||+.
T Consensus 93 eeA~~FV~kLWrlLIfe~ea~~~Gl~~ 119 (119)
T 3v53_A 93 EEAEVFIVKMWRLLIYETEAKKIGLVK 119 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 309999999999999999999837669
No 2
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=1.00 E-value=1 Score=174.53 Aligned_cols=84 Identities=18% Similarity=0.393 Sum_probs=79.4
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEE
Q ss_conf 99996699805899998889999974079603999800599999863589992899999999998289453995889986
Q 003520 93 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 172 (813)
Q Consensus 93 ~~~~~tIfVgNLp~~vte~~L~~lF~~~G~I~~~ki~~d~~sGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 172 (813)
..+.++|||+||++.|++..|..+|..||.|..|.|+.+..+|+++|||||+|.+.+.|..||..|||+.|+|+.|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCEECCEEEEEEE
T ss_conf 89998799848999899999999998709864877411588897351588862358999999997589888998889988
Q ss_pred ECHH
Q ss_conf 0001
Q 003520 173 DQAT 176 (813)
Q Consensus 173 a~~~ 176 (813)
+...
T Consensus 179 a~~~ 182 (437)
T 3pgw_S 179 ERGR 182 (437)
T ss_pred ECCC
T ss_conf 1788
No 3
>1mp1_A Ser/Arg-related nuclear matrix protein; four helix bundle, RNA binding protein; NMR {Homo sapiens} SCOP: a.188.1.1
Probab=1.00 E-value=1 Score=164.32 Aligned_cols=92 Identities=21% Similarity=0.435 Sum_probs=83.5
Q ss_pred CCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH-HHHHHHHH
Q ss_conf 981000010135110241467643335599887763087336899999985203-7797899999998543-88999999
Q 003520 713 KTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQD-HVKASQMLELLQTILD-DEAEMFVL 790 (813)
Q Consensus 713 ~~k~~lf~~~i~w~~~~~~~~~~~l~pwi~kki~e~lG~ee~~lv~~i~~~l~~-~~~p~~l~~~l~~~ld-e~a~~fv~ 790 (813)
+.++.+|+++|||..|+-. .|||||++||++|||++|++|||||+++|.. +.+|+.|+++|++||+ ++|..||.
T Consensus 5 ~kfp~~f~~kVD~~kV~l~----~ikpWI~kki~e~LG~EDdvlid~i~~~L~~~~~dpk~lqi~L~gFL~~e~a~~Fv~ 80 (111)
T 1mp1_A 5 LKFAECLEKKVDMSKVNLE----VIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMG 80 (111)
T ss_dssp CCCCSGGGGCCCTTTSCSG----GGHHHHHHHHHHHHSSCCSHHHHHHHHHTTSSSCCHHHHHHHHTTTSCSHHHHHHHH
T ss_pred CCCCHHHHCCCCHHHHHHH----HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 5578888061269882599----988899999999829951799999999842038999999998998848644899999
Q ss_pred HHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999999864303221
Q 003520 791 KMWRMLIFEIKKVETGLAL 809 (813)
Q Consensus 791 klWrllife~~~~~~g~~~ 809 (813)
+||+||||. .+...||..
T Consensus 81 eLW~LLi~a-q~~~~GIP~ 98 (111)
T 1mp1_A 81 ELWPLLLSA-QENIAGIPS 98 (111)
T ss_dssp HHHHHHHHH-TTSSSSCCH
T ss_pred HHHHHHHHH-HCCCCCCCH
T ss_conf 999999986-518768679
No 4
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=142.55 Aligned_cols=71 Identities=23% Similarity=0.376 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67643335599887763087336899999985203779789999999854388999999999999999986
Q 003520 732 ELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKK 802 (813)
Q Consensus 732 ~~~~~l~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~lde~a~~fv~klWrllife~~~ 802 (813)
+-.+.|||||++||++|||++|++||+||+++|..+.+|+.|+++|++|||++|+.||.+||+||++.+..
T Consensus 13 v~l~~lkpWI~kkv~e~LG~eD~~lVd~i~~~l~~~~dpk~l~~~L~~fLd~~a~~Fv~eLW~lL~~aq~s 83 (92)
T 1x4q_A 13 RELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTLRFVDKLFEAVEEGRSS 83 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTCCHHHHHHHHTTTTGGGTHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 85999899999999998099828999999999773899999999999782020999999999998998838
No 5
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=1.00 E-value=1 Score=130.60 Aligned_cols=90 Identities=22% Similarity=0.344 Sum_probs=81.6
Q ss_pred CCCCEEEECCCCCCCCHHHHHHHHHCCC--CEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCEECCEEEEEE
Q ss_conf 9996699805899998889999974079--60399980059999986358999289999999999828945399588998
Q 003520 94 KPQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 171 (813)
Q Consensus 94 ~~~~tIfVgNLp~~vte~~L~~lF~~~G--~I~~~ki~~d~~sGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~ 171 (813)
...++|||+||++.+++.+|+.+|..|| .|..+.++.++.+|+++|||||+|.+.++|..||..|||..|+|+.|.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHCCCCEECCEEEEEE
T ss_conf 99988999489998999999999998799617999987449999525289999798999999999869997899376998
Q ss_pred EECHHHHHHHHHHH
Q ss_conf 60001787899997
Q 003520 172 VDQATREYLERYVD 185 (813)
Q Consensus 172 ~a~~~kk~le~~k~ 185 (813)
++... .+..|..
T Consensus 133 ~a~~~--~~~~~e~ 144 (156)
T 3n9u_C 133 PATRQ--NLSQFEA 144 (156)
T ss_dssp ECCHH--HHHHHHH
T ss_pred ECCCC--CCHHHHH
T ss_conf 84777--3024556
No 6
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=126.17 Aligned_cols=81 Identities=21% Similarity=0.341 Sum_probs=77.7
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEEC
Q ss_conf 99669980589999888999997407960399980059999986358999289999999999828945399588998600
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 174 (813)
Q Consensus 95 ~~~tIfVgNLp~~vte~~L~~lF~~~G~I~~~ki~~d~~sGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 174 (813)
..++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|+++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEEE
T ss_conf 89999993999989999999999714988886754538889506218999879999999999848998999998999701
Q ss_pred H
Q ss_conf 0
Q 003520 175 A 175 (813)
Q Consensus 175 ~ 175 (813)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
T ss_conf 8
No 7
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=1.00 E-value=1 Score=125.15 Aligned_cols=82 Identities=18% Similarity=0.284 Sum_probs=78.5
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHCCC--CEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEE
Q ss_conf 996699805899998889999974079--603999800599999863589992899999999998289453995889986
Q 003520 95 PQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 172 (813)
Q Consensus 95 ~~~tIfVgNLp~~vte~~L~~lF~~~G--~I~~~ki~~d~~sGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 172 (813)
..++|||+||++.+++.+|+.+|..|| .|..+.|+.++.+|+++|||||+|.+.++|.+||..||+..|+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHCCCCEECCEEEEEEE
T ss_conf 84089985989989999999999987896358999875489995053899997989999999998589867998869987
Q ss_pred ECHH
Q ss_conf 0001
Q 003520 173 DQAT 176 (813)
Q Consensus 173 a~~~ 176 (813)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
T ss_conf 7777
No 8
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=124.41 Aligned_cols=86 Identities=15% Similarity=0.232 Sum_probs=80.5
Q ss_pred CCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEE
Q ss_conf 99966998058999988899999740796039998005999998635899928999999999982894539958899860
Q 003520 94 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 173 (813)
Q Consensus 94 ~~~~tIfVgNLp~~vte~~L~~lF~~~G~I~~~ki~~d~~sGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 173 (813)
++.++|||+||++.+++.+|+.+|..||.|..+.++.++.+|+++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEC
T ss_conf 99838999799999999999999985697448999777999946069999989799999999984899889808999988
Q ss_pred CHHHHH
Q ss_conf 001787
Q 003520 174 QATREY 179 (813)
Q Consensus 174 ~~~kk~ 179 (813)
......
T Consensus 84 ~~~~~~ 89 (110)
T 3s8s_A 84 IKGQQR 89 (110)
T ss_dssp STTHHH
T ss_pred CCCCHH
T ss_conf 887377
No 9
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=122.88 Aligned_cols=82 Identities=21% Similarity=0.335 Sum_probs=75.9
Q ss_pred CCEEEECCCCCCCCHHHHHHHHHCCC-CEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHH-CCCEECCEEEEEEEE
Q ss_conf 96699805899998889999974079-6039998005999998635899928999999999982-894539958899860
Q 003520 96 QTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMLKVD 173 (813)
Q Consensus 96 ~~tIfVgNLp~~vte~~L~~lF~~~G-~I~~~ki~~d~~sGk~kGfgFVeF~s~esA~~Al~~L-ng~~i~Gr~L~V~~a 173 (813)
+.+|||+|||+.+++++|+.+|..|| .|..++++.++.+|.++|||||+|.+.++|.+||..+ |+..|+|+.|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCEEEEEECCHHHHHHHHHHCCCCEEECCEEEEEEEC
T ss_conf 99999949999999999998998749875899998549999857528999649999999999627990899999999985
Q ss_pred CHHH
Q ss_conf 0017
Q 003520 174 QATR 177 (813)
Q Consensus 174 ~~~k 177 (813)
....
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
T ss_conf 8999
No 10
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=1.00 E-value=1 Score=121.53 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=81.4
Q ss_pred CCCCEEEECCCCC------CCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCEECC-E
Q ss_conf 9996699805899------99888999997407960399980059999986358999289999999999828945399-5
Q 003520 94 KPQTKVYVGKIAP------TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-Q 166 (813)
Q Consensus 94 ~~~~tIfVgNLp~------~vte~~L~~lF~~~G~I~~~ki~~d~~sGk~kGfgFVeF~s~esA~~Al~~Lng~~i~G-r 166 (813)
...++|||+|||+ .+++..|+.+|+.||.|..+.++.++.+|+++|||||+|.+.++|.+||..|||..|+| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCE
T ss_conf 86758999599868757788899999999985598769997775899961229999989999999999994796638970
Q ss_pred EEEEEEECHHHHHH
Q ss_conf 88998600017878
Q 003520 167 ELMLKVDQATREYL 180 (813)
Q Consensus 167 ~L~V~~a~~~kk~l 180 (813)
.|.|.++....+|.
T Consensus 84 ~l~V~~a~~~~~~~ 97 (100)
T 3ns6_A 84 RLFLYTMKDVERYN 97 (100)
T ss_dssp BCEEEESHHHHHHH
T ss_pred EEEEEECCHHHHHH
T ss_conf 79999876056433
Done!