BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003521
(813 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SIV2|RPN1A_ARATH 26S proteasome non-ATPase regulatory subunit 2 1A OS=Arabidopsis
thaliana GN=RPN1A PE=1 SV=2
Length = 891
Score = 1368 bits (3541), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 690/809 (85%), Positives = 761/809 (94%), Gaps = 3/809 (0%)
Query: 1 MAP--DPNSASGSGTKDEASVKVPAKDPKKKDDKKDEDLSEEDLALKQQLELYVERVQDP 58
MAP DPNS G KDEA++KVP+KDPKKKD+KKDEDLSEEDL LKQ LELYVERVQDP
Sbjct: 1 MAPTQDPNSVGGGAKKDEATLKVPSKDPKKKDEKKDEDLSEEDLELKQNLELYVERVQDP 60
Query: 59 DPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADIL 118
+P LQK ALESMR EIR STSSMTSVPKPLKFLRPHYGTLKA++ETM DSDLKKY++DIL
Sbjct: 61 NPELQKAALESMRQEIRASTSSMTSVPKPLKFLRPHYGTLKAFHETMADSDLKKYLSDIL 120
Query: 119 SVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLM 178
SVLALTMSA+GERESL++RL+G+EGDIGSWGHEYVRNLAGEIAQEY KRQ++EASIDDLM
Sbjct: 121 SVLALTMSADGERESLRFRLIGTEGDIGSWGHEYVRNLAGEIAQEYTKRQSEEASIDDLM 180
Query: 179 ELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDD 238
ELVQ+IVAFHMKHNAE EAVDLLM+VEDLDLL+EHVD TNFKRTC YLTSAA+YLPGPDD
Sbjct: 181 ELVQQIVAFHMKHNAETEAVDLLMDVEDLDLLLEHVDKTNFKRTCNYLTSAARYLPGPDD 240
Query: 239 MLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITL 298
MLVLDI+YMIY+KFEE+PNALQIALFLDN QYVKQ+FTSC DLL+KKQFCY++ARHGIT
Sbjct: 241 MLVLDISYMIYMKFEEYPNALQIALFLDNTQYVKQVFTSCTDLLKKKQFCYMIARHGITF 300
Query: 299 ELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAG 358
ELDD+MV DDDDR ALQDIVNN KLSEGYLTLARDIEVME K+PEDIYKAHLLDGRAS+G
Sbjct: 301 ELDDEMVADDDDREALQDIVNNTKLSEGYLTLARDIEVMEAKTPEDIYKAHLLDGRASSG 360
Query: 359 ASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASL 418
ASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSD+++G SSGNWLFKNKEHGK SAAASL
Sbjct: 361 ASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDSTTG-SSGNWLFKNKEHGKTSAAASL 419
Query: 419 GMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRED 478
GMI LWDVDSGL+Q+DKYFHS DN +IAGALLGVGIVNCGI+NDCDPALALL +Y+ +ED
Sbjct: 420 GMIQLWDVDSGLSQLDKYFHSNDNPIIAGALLGVGIVNCGIKNDCDPALALLGDYIDKED 479
Query: 479 ACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEV 538
+ +RIGAIMGLGISYAG+QNDQIR+KLS ILNDAK+PLDVIAF+++SLG+IYVGSCNEEV
Sbjct: 480 SSVRIGAIMGLGISYAGSQNDQIRNKLSPILNDAKAPLDVIAFASLSLGMIYVGSCNEEV 539
Query: 539 AQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMT 598
AQ+IIFALMDRSE+ELG+ LTR +PLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMT
Sbjct: 540 AQSIIFALMDRSEAELGDALTRFLPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMT 599
Query: 599 LLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEH 658
LLSCAYAGTGNVLKVQ+LL C +H EKG+ +QGPAVLG+AMVAM+EELG++M IRSLE
Sbjct: 600 LLSCAYAGTGNVLKVQDLLAQCGEHLEKGDIHQGPAVLGLAMVAMSEELGVDMEIRSLER 659
Query: 659 LLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN 718
+LQYGEQNIRRAVPLALGLLCISNPKV VMDTLSRLSHDTDSEVAM+A+ISLGLIG+GTN
Sbjct: 660 MLQYGEQNIRRAVPLALGLLCISNPKVTVMDTLSRLSHDTDSEVAMSAIISLGLIGAGTN 719
Query: 719 NARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIV 778
NARIAGMLRNLSSYYYKD +LLFCVRIAQGLVHMGKGLLTL+P+HS+RFLLSPTALAGIV
Sbjct: 720 NARIAGMLRNLSSYYYKDMSLLFCVRIAQGLVHMGKGLLTLSPFHSERFLLSPTALAGIV 779
Query: 779 TTLFACLDMKAVIVGKYHYVLYFLVLAMQ 807
T L ACLDMK +I+GKYHYVLYFLVLAMQ
Sbjct: 780 TLLHACLDMKPIILGKYHYVLYFLVLAMQ 808
>sp|Q6XJG8|RPN1B_ARATH 26S proteasome non-ATPase regulatory subunit 2 1B OS=Arabidopsis
thaliana GN=RPN1B PE=2 SV=1
Length = 891
Score = 1338 bits (3462), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 663/805 (82%), Positives = 738/805 (91%), Gaps = 1/805 (0%)
Query: 3 PDPNSASGSGTKDEASVKVPAKDPKKKDDKKDEDLSEEDLALKQQLELYVERVQDPDPGL 62
PDPNS G +DEA+ K+P+KD KKKDDKK+EDLSEEDL LKQ LELYVERVQDP+P L
Sbjct: 5 PDPNSVGGGAKRDEATTKIPSKDSKKKDDKKEEDLSEEDLQLKQNLELYVERVQDPNPEL 64
Query: 63 QKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLA 122
QK+ALESMR EIR STSSMTSVPKPLKFLRPHYG LK ++ M +SDLKK +ADILSVLA
Sbjct: 65 QKIALESMRKEIRDSTSSMTSVPKPLKFLRPHYGVLKEFHAKMAESDLKKMLADILSVLA 124
Query: 123 LTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLMELVQ 182
LTMSAEGERESL YRL GSE DIGSWGHEYVRNLAGEIA+EY RQ +E+SI+DLM+LVQ
Sbjct: 125 LTMSAEGERESLNYRLNGSESDIGSWGHEYVRNLAGEIAKEYTIRQGEESSIEDLMDLVQ 184
Query: 183 EIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVL 242
+IV+FHMKHNAE EAVDLLM+VEDLDLL+EHVD TNF+RTC YLTSAAKYLPGPDDMLVL
Sbjct: 185 QIVSFHMKHNAETEAVDLLMDVEDLDLLLEHVDNTNFRRTCNYLTSAAKYLPGPDDMLVL 244
Query: 243 DIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLELDD 302
DIAYMIY+KF E+PNALQIALFLDNMQYVKQ+FTSC DL++KKQFCY++ARHG+T ELD
Sbjct: 245 DIAYMIYIKFAEYPNALQIALFLDNMQYVKQVFTSCTDLVKKKQFCYMIARHGMTFELDQ 304
Query: 303 DMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVD 362
+MV +D+D+ ALQDIVNN KLSEGYLTLARDIEVME K+PEDIYKAHLLDGRAS+G SVD
Sbjct: 305 EMVANDEDKEALQDIVNNSKLSEGYLTLARDIEVMEAKTPEDIYKAHLLDGRASSGPSVD 364
Query: 363 SARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMIL 422
SARQNL+ATFVNAFVNAGFGQDKLMTVPSD++SG S+GNWLFKNKEHGK SA ASLGMI
Sbjct: 365 SARQNLSATFVNAFVNAGFGQDKLMTVPSDSTSG-SAGNWLFKNKEHGKTSAVASLGMIQ 423
Query: 423 LWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIR 482
LWDV++GL +DKYFHS DN V+AGALLGVGIVNCGI+NDCDPA ALLS Y+ ED+ +R
Sbjct: 424 LWDVETGLGHLDKYFHSNDNPVVAGALLGVGIVNCGIKNDCDPAFALLSGYIDNEDSSVR 483
Query: 483 IGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAI 542
IGAIMGLGI+YAG+QNDQI+ +LS ILNDA +PLDVIAF+A+SLG+IYVGSCNEEVAQ+I
Sbjct: 484 IGAIMGLGIAYAGSQNDQIKIRLSPILNDANAPLDVIAFAALSLGMIYVGSCNEEVAQSI 543
Query: 543 IFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSC 602
IFALMDRSE+ELGE LTR +PLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSC
Sbjct: 544 IFALMDRSEAELGEALTRFLPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSC 603
Query: 603 AYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQY 662
AYAGTGNVLKVQ+LL C +H KG+ +QGPAV+G+AMVAM+EELGL+M IRSLE +LQY
Sbjct: 604 AYAGTGNVLKVQDLLAQCGEHLVKGDIHQGPAVIGLAMVAMSEELGLDMEIRSLERVLQY 663
Query: 663 GEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARI 722
GEQNIRRAVPLALGLLCISNPKV VMDTLSRLSHDTDSEVAMAA+ISLGLIG+GTNNARI
Sbjct: 664 GEQNIRRAVPLALGLLCISNPKVTVMDTLSRLSHDTDSEVAMAAIISLGLIGAGTNNARI 723
Query: 723 AGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLF 782
AGMLRNLSSYYYKDA+LLFCVRIAQG VHMGKGLLTLNP+HS+R LLSPTALAGIVT L
Sbjct: 724 AGMLRNLSSYYYKDASLLFCVRIAQGFVHMGKGLLTLNPFHSERLLLSPTALAGIVTLLH 783
Query: 783 ACLDMKAVIVGKYHYVLYFLVLAMQ 807
ACLDMK++I+GKYHYVLYFLVLAMQ
Sbjct: 784 ACLDMKSIILGKYHYVLYFLVLAMQ 808
>sp|P56701|PSMD2_BOVIN 26S proteasome non-ATPase regulatory subunit 2 OS=Bos taurus
GN=PSMD2 PE=1 SV=2
Length = 908
Score = 833 bits (2151), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/833 (49%), Positives = 585/833 (70%), Gaps = 43/833 (5%)
Query: 1 MAPDPNSASGSGTKDEASVKVPAKDPKKKDDKKDEDLSEEDLALKQQLELYVERVQDPDP 60
+ P A+ G+ DE +D KD K+++LSEED L+ +LE+ VER+ + D
Sbjct: 11 LQPQQPPATSPGSGDEKPSGKERRDAGDKD--KEQELSEEDKQLQDELEMLVERLGEKDT 68
Query: 61 GLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSV 120
L + ALE +R +IR+ST+SMTSVPKPLKFLRPHYG LK YE M + K++ ADI+SV
Sbjct: 69 SLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKRFAADIISV 128
Query: 121 LALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAK-RQTDEASIDDLME 179
LA+TMS GERE LKYRL+GS+ ++ SWGHEYVR+LAGE+A+E+ + ++ + L+
Sbjct: 129 LAMTMS--GERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEKTQREPLLT 186
Query: 180 LVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDM 239
LV+EIV ++M HNAE EA DLLME+E +D+L + +D + + CLYLTS Y+P P++
Sbjct: 187 LVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYVPEPENS 246
Query: 240 LVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLE 299
+L A ++ KF FP AL++AL L++M+ V+ IFTSC D++ +KQ ++L RHG+ LE
Sbjct: 247 ALLRCALGVFRKFSRFPEALRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGRHGVFLE 306
Query: 300 LDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGR-ASAG 358
L +D+ +D L +I++NV+L+ +L LAR++++MEPK P+DIYK HL + R +G
Sbjct: 307 LSEDVEEYED----LTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGGSG 362
Query: 359 ASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGN-WLFKNKEHGKMSAAAS 417
+ VDSAR NLA++FVN FVNA FGQDKL+T GN WL+KNK+HG +SAAAS
Sbjct: 363 SQVDSARMNLASSFVNGFVNAAFGQDKLLT---------DDGNKWLYKNKDHGMLSAAAS 413
Query: 418 LGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRE 477
LGMILLWDVD GL QIDKY +S+++++ +GALL GIVN G+RN+CDPALALLS+YV
Sbjct: 414 LGMILLWDVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVLHN 473
Query: 478 DACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEE 537
+R+G+I GLG++YAG+ + + L ++ D+KS ++V +A++ G+I VGSCN +
Sbjct: 474 SNTMRLGSIFGLGLAYAGSNREDVLTLLLPVMGDSKSSMEVAGVTALACGMIAVGSCNGD 533
Query: 538 VAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDM 597
V I+ +M++SE+EL + R +PLGLGL +LGK E++EA + +E R + +
Sbjct: 534 VTSTILQTIMEKSETELKDTYARWLPLGLGLNHLGKGEAIEAILAALEVVSEPFRSFANT 593
Query: 598 TLLSCAYAGTGNVLKVQNLLGHCAQHHEKGE-----------------------AYQGPA 634
+ CAYAG+GNVLKVQ LL C++H + E A+QG A
Sbjct: 594 LVDVCAYAGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQGVA 653
Query: 635 VLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRL 694
VLGIA++AM EE+G EMA+R+ HLL+YGE +RRAVPLAL L+ +SNP++N++DTLS+
Sbjct: 654 VLGIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKF 713
Query: 695 SHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGK 754
SHD D EV+ ++ ++G++GSGTNNAR+A MLR L+ Y+ KD N LF VR+AQGL H+GK
Sbjct: 714 SHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGK 773
Query: 755 GLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQ 807
G LTL PYHSDR L+S A+AG++T L + LD++ +I+GK HYVLY LV AMQ
Sbjct: 774 GTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQ 826
>sp|Q8VDM4|PSMD2_MOUSE 26S proteasome non-ATPase regulatory subunit 2 OS=Mus musculus
GN=Psmd2 PE=1 SV=1
Length = 908
Score = 832 bits (2150), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/829 (50%), Positives = 587/829 (70%), Gaps = 44/829 (5%)
Query: 5 PNSASGSGTKDEASVKVPAKDPKKKDDKKDEDLSEEDLALKQQLELYVERVQDPDPGLQK 64
P++ + SG DE S +D +KD K+++LSEED L+ +LE+ VER+ + D L +
Sbjct: 16 PSATTPSGA-DEKSSGKERRDAGEKD--KEQELSEEDKQLQDELEMLVERLGEKDTSLYR 72
Query: 65 VALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALT 124
ALE +R +IR+ST+SMTSVPKPLKFLRPHYG LK YE M + K + ADI+SVLA+T
Sbjct: 73 PALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKCFAADIISVLAMT 132
Query: 125 MSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAK-RQTDEASIDDLMELVQE 183
MS GERE LKYRL+GS+ ++ SWGHEYVR+LAGE+A+E+ + ++A + L+ LV+E
Sbjct: 133 MS--GERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEKAQREPLLTLVKE 190
Query: 184 IVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLD 243
IV ++M HNAE EA DLLME+E +D+L + +D + + CLYLTS Y+P P++ +L
Sbjct: 191 IVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYVPEPENSALLR 250
Query: 244 IAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLELDDD 303
A ++ KF FP AL++AL L++M+ V+ IFTSC D++ +KQ ++L RHG+ LEL +D
Sbjct: 251 CALGVFRKFSRFPEALRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGRHGVFLELSED 310
Query: 304 MVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGR-ASAGASVD 362
+ +D L +I++NV+L+ +L LAR++++MEPK P+DIYK HL + R +G+ VD
Sbjct: 311 VEEYED----LTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGGSGSQVD 366
Query: 363 SARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGN-WLFKNKEHGKMSAAASLGMI 421
SAR NLA++FVN FVNA FGQDKL+T GN WL+KNK+HG +SAAASLGMI
Sbjct: 367 SARMNLASSFVNGFVNAAFGQDKLLT---------DDGNKWLYKNKDHGMLSAAASLGMI 417
Query: 422 LLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACI 481
LLWDVD GL QIDKY +S+++++ +GALL GIVN G+RN+CDPALALLS+YV +
Sbjct: 418 LLWDVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVLHNSNTM 477
Query: 482 RIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQA 541
R+G+I GLG++YAG+ + + L ++ D+KS ++V +A++ G+I VGSCN +V
Sbjct: 478 RLGSIFGLGLAYAGSNREDVLTLLLPVMGDSKSSMEVAGVTALACGMIAVGSCNGDVTST 537
Query: 542 IIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLS 601
I+ +M++SE+EL + R +PLGLGL +LGK E++EA + +E R + + +
Sbjct: 538 ILQTIMEKSETELKDTYARWLPLGLGLNHLGKGEAIEAILAALEVVSEPFRSFANTLVDV 597
Query: 602 CAYAGTGNVLKVQNLLGHCAQHHEKGE-----------------------AYQGPAVLGI 638
CAYAG+GNVLKVQ LL C++H + E A+QG AVLGI
Sbjct: 598 CAYAGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQGVAVLGI 657
Query: 639 AMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDT 698
A++AM EE+G EMA+R+ HLL+YGE +RRAVPLAL L+ +SNP++N++DTLS+ SHD
Sbjct: 658 ALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDA 717
Query: 699 DSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLT 758
D EV+ ++ ++G++GSGTNNAR+A MLR L+ Y+ KD N LF VR+AQGL H+GKG LT
Sbjct: 718 DPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLT 777
Query: 759 LNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQ 807
L PYHSDR L+S A+AG++T L + LD++ +I+GK HYVLY LV AMQ
Sbjct: 778 LCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQ 826
>sp|Q4FZT9|PSMD2_RAT 26S proteasome non-ATPase regulatory subunit 2 OS=Rattus norvegicus
GN=Psmd2 PE=2 SV=1
Length = 908
Score = 832 bits (2149), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/829 (50%), Positives = 587/829 (70%), Gaps = 44/829 (5%)
Query: 5 PNSASGSGTKDEASVKVPAKDPKKKDDKKDEDLSEEDLALKQQLELYVERVQDPDPGLQK 64
P++ + SG DE S +D +KD K+++LSEED L+ +LE+ VER+ + D L +
Sbjct: 16 PSATAPSGA-DEKSSGKERRDAGEKD--KEQELSEEDKQLQDELEMLVERLGEKDTSLYR 72
Query: 65 VALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALT 124
ALE +R +IR+ST+SMTSVPKPLKFLRPHYG LK YE M + K + ADI+SVLA+T
Sbjct: 73 PALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKCFAADIISVLAMT 132
Query: 125 MSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAK-RQTDEASIDDLMELVQE 183
MS GERE LKYRL+GS+ ++ SWGHEYVR+LAGE+A+E+ + ++A + L+ LV+E
Sbjct: 133 MS--GERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEKAQREPLLTLVKE 190
Query: 184 IVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLD 243
IV ++M HNAE EA DLLME+E +D+L + +D + + CLYLTS Y+P P++ +L
Sbjct: 191 IVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYSKVCLYLTSCVNYVPEPENSALLR 250
Query: 244 IAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLELDDD 303
A ++ KF FP AL++AL L++M+ V+ IFTSC D++ +KQ ++L RHG+ LEL +D
Sbjct: 251 CALGVFRKFSRFPEALRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGRHGVFLELSED 310
Query: 304 MVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGR-ASAGASVD 362
+ +D L +I++NV+L+ +L LAR++++MEPK P+DIYK HL + R +G+ VD
Sbjct: 311 VEEYED----LTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGGSGSQVD 366
Query: 363 SARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGN-WLFKNKEHGKMSAAASLGMI 421
SAR NLA++FVN FVNA FGQDKL+T GN WL+KNK+HG +SAAASLGMI
Sbjct: 367 SARMNLASSFVNGFVNAAFGQDKLLT---------DDGNKWLYKNKDHGMLSAAASLGMI 417
Query: 422 LLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACI 481
LLWDVD GL QIDKY +S+++++ +GALL GIVN G+RN+CDPALALLS+YV +
Sbjct: 418 LLWDVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVLHNSNTM 477
Query: 482 RIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQA 541
R+G+I GLG++YAG+ + + L ++ D+KS ++V +A++ G+I VGSCN +V
Sbjct: 478 RLGSIFGLGLAYAGSNREDVLTLLLPVMGDSKSSMEVAGVTALACGMIAVGSCNGDVTST 537
Query: 542 IIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLS 601
I+ +M++SE+EL + R +PLGLGL +LGK E++EA + +E R + + +
Sbjct: 538 ILQTIMEKSETELKDTYARWLPLGLGLNHLGKGEAIEAILAALEVVSEPFRSFANTLVDV 597
Query: 602 CAYAGTGNVLKVQNLLGHCAQHHEKGE-----------------------AYQGPAVLGI 638
CAYAG+GNVLKVQ LL C++H + E A+QG AVLGI
Sbjct: 598 CAYAGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQGVAVLGI 657
Query: 639 AMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDT 698
A++AM EE+G EMA+R+ HLL+YGE +RRAVPLAL L+ +SNP++N++DTLS+ SHD
Sbjct: 658 ALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDA 717
Query: 699 DSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLT 758
D EV+ ++ ++G++GSGTNNAR+A MLR L+ Y+ KD N LF VR+AQGL H+GKG LT
Sbjct: 718 DPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLT 777
Query: 759 LNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQ 807
L PYHSDR L+S A+AG++T L + LD++ +I+GK HYVLY LV AMQ
Sbjct: 778 LCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQ 826
>sp|Q13200|PSMD2_HUMAN 26S proteasome non-ATPase regulatory subunit 2 OS=Homo sapiens
GN=PSMD2 PE=1 SV=3
Length = 908
Score = 832 bits (2148), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/831 (50%), Positives = 584/831 (70%), Gaps = 43/831 (5%)
Query: 3 PDPNSASGSGTKDEASVKVPAKDPKKKDDKKDEDLSEEDLALKQQLELYVERVQDPDPGL 62
P + A+ G DE +D KD K+++LSEED L+ +LE+ VER+ + D L
Sbjct: 13 PQQSPAAAPGGTDEKPSGKERRDAGDKD--KEQELSEEDKQLQDELEMLVERLGEKDTSL 70
Query: 63 QKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLA 122
+ ALE +R +IR+ST+SMTSVPKPLKFLRPHYG LK YE M + K++ ADI+SVLA
Sbjct: 71 YRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKRFAADIISVLA 130
Query: 123 LTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAK-RQTDEASIDDLMELV 181
+TMS GERE LKYRL+GS+ ++ SWGHEYVR+LAGE+A+E+ + ++ + L+ LV
Sbjct: 131 MTMS--GERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEKVQREPLLTLV 188
Query: 182 QEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLV 241
+EIV ++M HNAE EA DLLME+E +D+L + +D + + CLYLTS Y+P P++ +
Sbjct: 189 KEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYVPEPENSAL 248
Query: 242 LDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLELD 301
L A ++ KF FP AL++AL L++M+ V+ IFTSC D++ +KQ ++L RHG+ LEL
Sbjct: 249 LRCALGVFRKFSRFPEALRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGRHGVFLELS 308
Query: 302 DDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGR-ASAGAS 360
+D+ +D L +I++NV+L+ +L LAR++++MEPK P+DIYK HL + R +G+
Sbjct: 309 EDVEEYED----LTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGGSGSQ 364
Query: 361 VDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGN-WLFKNKEHGKMSAAASLG 419
VDSAR NLA++FVN FVNA FGQDKL+T GN WL+KNK+HG +SAAASLG
Sbjct: 365 VDSARMNLASSFVNGFVNAAFGQDKLLT---------DDGNKWLYKNKDHGMLSAAASLG 415
Query: 420 MILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDA 479
MILLWDVD GL QIDKY +S+++++ +GALL GIVN G+RN+CDPALALLS+YV
Sbjct: 416 MILLWDVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVLHNSN 475
Query: 480 CIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVA 539
+R+G+I GLG++YAG+ + + L ++ D+KS ++V +A++ G+I VGSCN +V
Sbjct: 476 TMRLGSIFGLGLAYAGSNREDVLTLLLPVMGDSKSSMEVAGVTALACGMIAVGSCNGDVT 535
Query: 540 QAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTL 599
I+ +M++SE+EL + R +PLGLGL +LGK E++EA + +E R + + +
Sbjct: 536 STILQTIMEKSETELKDTYARWLPLGLGLNHLGKGEAIEAILAALEVVSEPFRSFANTLV 595
Query: 600 LSCAYAGTGNVLKVQNLLGHCAQHHEKGE-----------------------AYQGPAVL 636
CAYAG+GNVLKVQ LL C++H + E A+QG AVL
Sbjct: 596 DVCAYAGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQGVAVL 655
Query: 637 GIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSH 696
GIA++AM EE+G EMA+R+ HLL+YGE +RRAVPLAL L+ +SNP++N++DTLS+ SH
Sbjct: 656 GIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSH 715
Query: 697 DTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGL 756
D D EV+ ++ ++G++GSGTNNAR+A MLR L+ Y+ KD N LF VR+AQGL H+GKG
Sbjct: 716 DADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGT 775
Query: 757 LTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQ 807
LTL PYHSDR L+S A+AG++T L + LD++ +I+GK HYVLY LV AMQ
Sbjct: 776 LTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQ 826
>sp|Q5R9I6|PSMD2_PONAB 26S proteasome non-ATPase regulatory subunit 2 OS=Pongo abelii
GN=PSMD2 PE=2 SV=1
Length = 908
Score = 830 bits (2144), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/831 (49%), Positives = 584/831 (70%), Gaps = 43/831 (5%)
Query: 3 PDPNSASGSGTKDEASVKVPAKDPKKKDDKKDEDLSEEDLALKQQLELYVERVQDPDPGL 62
P + A+ G DE +D KD K+++LSEED L+ +LE+ VER+ + D L
Sbjct: 13 PQQSPAAALGGTDEKPSGKERRDAGDKD--KEQELSEEDKQLQDELEMLVERLGEKDTSL 70
Query: 63 QKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLA 122
+ ALE +R +IR+ST+SMTSVPKPLKFLRPHYG LK YE M + K++ ADI+SVLA
Sbjct: 71 YRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKRFAADIISVLA 130
Query: 123 LTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAK-RQTDEASIDDLMELV 181
+TMS GERE LKYRL+GS+ ++ SWGHEYVR+LAGE+A+E+ + ++ + L+ LV
Sbjct: 131 MTMS--GERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEKVQREPLLTLV 188
Query: 182 QEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLV 241
+EI+ ++M HNAE EA DLLME+E +D+L + +D + + CLYLTS Y+P P++ +
Sbjct: 189 KEIIPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYVPEPENSAL 248
Query: 242 LDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLELD 301
L A ++ KF FP AL++AL L++M+ V+ IFTSC D++ +KQ ++L RHG+ LEL
Sbjct: 249 LRCALGVFRKFSRFPEALRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGRHGVFLELS 308
Query: 302 DDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGR-ASAGAS 360
+D+ +D L +I++NV+L+ +L LAR++++MEPK P+DIYK HL + R +G+
Sbjct: 309 EDVEEYED----LTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGGSGSQ 364
Query: 361 VDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGN-WLFKNKEHGKMSAAASLG 419
VDSAR NLA++FVN FVNA FGQDKL+T GN WL+KNK+HG +SAAASLG
Sbjct: 365 VDSARMNLASSFVNGFVNAAFGQDKLLT---------DDGNKWLYKNKDHGMLSAAASLG 415
Query: 420 MILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDA 479
MILLWDVD GL QIDKY +S+++++ +GALL GIVN G+RN+CDPALALLS+YV
Sbjct: 416 MILLWDVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVLHNSN 475
Query: 480 CIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVA 539
+R+G+I GLG++YAG+ + + L ++ D+KS ++V +A++ G+I VGSCN +V
Sbjct: 476 TMRLGSIFGLGLAYAGSNREDVLTLLLPVMGDSKSSMEVAGVTALACGMIAVGSCNGDVT 535
Query: 540 QAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTL 599
I+ +M++SE+EL + R +PLGLGL +LGK E++EA + +E R + + +
Sbjct: 536 STILQTIMEKSETELKDTYARWLPLGLGLNHLGKGEAIEAILAALEVVSEPFRSFANTLV 595
Query: 600 LSCAYAGTGNVLKVQNLLGHCAQHHEKGE-----------------------AYQGPAVL 636
CAYAG+GNVLKVQ LL C++H + E A+QG AVL
Sbjct: 596 DVCAYAGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQGVAVL 655
Query: 637 GIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSH 696
GIA++AM EE+G EMA+R+ HLL+YGE +RRAVPLAL L+ +SNP++N++DTLS+ SH
Sbjct: 656 GIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSH 715
Query: 697 DTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGL 756
D D EV+ ++ ++G++GSGTNNAR+A MLR L+ Y+ KD N LF VR+AQGL H+GKG
Sbjct: 716 DADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGT 775
Query: 757 LTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQ 807
LTL PYHSDR L+S A+AG++T L + LD++ +I+GK HYVLY LV AMQ
Sbjct: 776 LTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQ 826
>sp|P87048|RPN1_SCHPO 26S proteasome regulatory subunit rpn1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpn1 PE=1 SV=2
Length = 891
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/815 (46%), Positives = 533/815 (65%), Gaps = 26/815 (3%)
Query: 2 APDPNSA--SGSGTK-DEASVKVPAKDPKKKDDKKDEDLSEEDLALKQQLELYVERVQDP 58
+P N A GTK E + + + K++D+ EDLSEEDL LK LEL V+ VQD
Sbjct: 10 SPSGNDALNDKKGTKTSETNDRNSTNNTKERDEL--EDLSEEDLQLKNDLELLVQAVQDA 67
Query: 59 DPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADIL 118
P L +L ++ IRTSTSSMT+VPKPLKFLRPHY TL Y++ P S K +ADIL
Sbjct: 68 TPELVGSSLTQLKEIIRTSTSSMTAVPKPLKFLRPHYFTLVKIYDSWPQSPQKTQLADIL 127
Query: 119 SVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLM 178
SVL ++ S + ESLKYRL G D WGHEYVR+LA EI +E+A RQ +EA DDLM
Sbjct: 128 SVLGMSYSNTSKHESLKYRLQGVTTDPSLWGHEYVRHLASEIEEEFASRQEEEAPTDDLM 187
Query: 179 ELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDD 238
EL IV F + HNAE +A+DLL E+ ++ +V V+ N R CLY+TS LP P+D
Sbjct: 188 ELALTIVPFFLTHNAEADAIDLLQELGAIEKVVPFVELDNASRVCLYITSCVNLLPFPED 247
Query: 239 MLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITL 298
+ +L A+ IY KF++ AL +A+ LD+M +K+ + D L KKQ Y+LAR I +
Sbjct: 248 VAMLRTAHAIYRKFDQLTQALNVAIRLDDMSLIKEDCEAATDPLLKKQMSYMLARQQIPM 307
Query: 299 ELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAG 358
++ D+ L D +NN LS+ + L +++ +M+PK PEDI+K HL R G
Sbjct: 308 DMGDE---------ELNDALNNTHLSDHFHYLGKELNLMDPKVPEDIFKTHLEVARTGLG 358
Query: 359 AS-VDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAAS 417
AS V SA+QNLA TFVNA VNAG+ D+L+ V + +S W++KNKE G +SA AS
Sbjct: 359 ASGVYSAKQNLANTFVNALVNAGYSNDRLILVDDEKTS------WIYKNKESGLISATAS 412
Query: 418 LGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRE 477
+G++ LW+VD GL+ +DKY +S++ + AGALLG+G+ N +RN+ DPA+A+LSEY+
Sbjct: 413 IGLLQLWNVDMGLSLLDKYLYSSEENTKAGALLGIGVTNVAVRNEADPAMAILSEYLETG 472
Query: 478 DACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEE 537
+R AI+GLG++Y+G + + LS I+ D P+ + +A+SLGLI+VG+CN +
Sbjct: 473 SVKLRASAILGLGLAYSGANREDLLDMLSPIVTDTDCPMQLSCLAALSLGLIFVGTCNGD 532
Query: 538 VAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDM 597
VA I+ LM+R ES + R + LGL LL+ GKQ+ +AT E K KI + ++
Sbjct: 533 VASTILQTLMEREESAQNDQWGRFMALGLALLFNGKQDLADATVETLKAIEGKIARQAEI 592
Query: 598 TLLSCAYAGTGNVLKVQNLLGHCAQ-----HHEKGEAYQGPAVLGIAMVAMAEELGLEMA 652
+ C+YAGTGNVL +Q LL C++ E Q A LG+A +AM E++G EM
Sbjct: 593 LVDICSYAGTGNVLHIQKLLHICSEPPSDDAKESETTIQTFAALGVATIAMGEDIGAEMV 652
Query: 653 IRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGL 712
+R +H++ YGE +IR+A+PLALGLL SNP++ + DTLSR SHD D +VA A+ ++GL
Sbjct: 653 LRHFDHMMHYGEPSIRKAIPLALGLLSASNPQMRIFDTLSRYSHDNDLDVAYNAIFAMGL 712
Query: 713 IGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPT 772
+G+GT+NAR+A +LR L+SYY+K++N LF VRIAQGL+++GKG +TLNPYH++R +L T
Sbjct: 713 VGAGTSNARLAQLLRQLASYYHKESNALFMVRIAQGLLYLGKGTMTLNPYHTERQILGQT 772
Query: 773 ALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQ 807
A AG++T + A LD ++ H++LY + LA++
Sbjct: 773 AFAGLMTVVLAMLDANTFVLDTSHWLLYAITLAIR 807
>sp|Q7S8R8|RPN1_NEUCR 26S proteasome regulatory subunit rpn-1 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=rpn-1 PE=3 SV=2
Length = 902
Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/798 (45%), Positives = 527/798 (66%), Gaps = 20/798 (2%)
Query: 20 KVPAKDPKKKDDKKDEDLSEEDLALKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTS 79
K PA K+++ E+LSEED LK +LE+ VER+ + D L K ALE+M+ I+TSTS
Sbjct: 31 KTPANGKKEEEQNASEELSEEDQQLKSELEMLVERLTESDATLYKPALEAMKNSIKTSTS 90
Query: 80 SMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTMSAEGERESLKYRLL 139
SMT+VPKPLKFLRPHY T+ Y+ P D K +AD+LSV+ +T S E +++LKYRLL
Sbjct: 91 SMTAVPKPLKFLRPHYETMTKLYDEWPAGDDKSSLADVLSVIGMTYSDEDRQDTLKYRLL 150
Query: 140 GSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLMELVQEIVAFHMKHNAEPEAVD 199
DIGSWGHEYVR+LA EI + YAKR ++ +L++L +V +K NAE +AVD
Sbjct: 151 SPTQDIGSWGHEYVRHLALEIGEVYAKRIANDEPTQELVDLALVLVPLFLKSNAEADAVD 210
Query: 200 LLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPNAL 259
L+ E+E ++ L + +D + R CLY+ S L PD+ L +A+ IY K+ + A+
Sbjct: 211 LMSELEIIEELPKFLDENTYSRVCLYMVSMVNLLTYPDNETFLRVAHSIYKKYNQHTQAM 270
Query: 260 QIALFLDNMQYVKQIFTSCD-DLLRKKQFCYILARHGITLELDDDMVPDDDDRYALQDIV 318
+A+ L+++ +++ F + D D +KQ +++AR GI LE + DDD++ + + +
Sbjct: 271 VLAIRLNDLGLIEKDFEAADEDPALRKQLAFLIARQGIPLEFERS--NDDDEK--IYECL 326
Query: 319 NNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVN 378
+N KLSE + +L +++ ++EPK+ EDIYK+HL R + + DSAR NLAA FVNAFVN
Sbjct: 327 SNQKLSEYFKSLGKELNILEPKTTEDIYKSHLESSRVAGMTNFDSARHNLAAGFVNAFVN 386
Query: 379 AGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDSGLAQIDKYFH 438
AGFG DK+M V D S W++K K+ G MS ASLG +LLWDV++GL +DKY +
Sbjct: 387 AGFGSDKMMLVGKDKDS------WVWKTKDEGMMSTVASLGTLLLWDVENGLDHVDKYTY 440
Query: 439 STDNHVIAGALLGVGIVNCGIRNDCDPALALLS--EYVGREDACIRIGAIMGLGISYAGT 496
+ + AGA L +GI+N +R D +PA+ALL+ + + ++ IR+ IMGLG++YAG+
Sbjct: 441 LEEEQIQAGAYLAIGIMNTNVRTDSEPAMALLADPDKLAHKNPLIRVATIMGLGLAYAGS 500
Query: 497 QNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMD-RSESELG 555
+++ L I++D + + V A +A++ G+I+VGS N EV++AI+ L+D S S L
Sbjct: 501 CKEELLSFLVNIISDPEESMQVSAMAALACGMIFVGSSNSEVSEAIVTTLLDEESGSRLN 560
Query: 556 EPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQN 615
+ +R + LGLGLLY G+QE V+ E K + K + CA+AGTG VLK+Q
Sbjct: 561 DKWSRFLALGLGLLYFGRQEQVDVILETLKAVEHPMAKPTAVLAEICAWAGTGAVLKIQE 620
Query: 616 LLGHCAQH------HEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRR 669
LL C +H + E Q AVLGI ++AM E++G EM +R HL+ YGE NIRR
Sbjct: 621 LLHICNEHIEDGEEKKGEELLQAYAVLGIGLIAMGEDVGQEMVLRHFGHLMHYGEANIRR 680
Query: 670 AVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNL 729
AVPLA+GL+ SNP++ V DTLSR SHD D+EVA+ A+ ++GL+G+GTNNAR+A +LR L
Sbjct: 681 AVPLAMGLISPSNPQMKVYDTLSRYSHDNDNEVAINAIFAMGLLGAGTNNARLAQLLRQL 740
Query: 730 SSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKA 789
+SYY++D LF VRIAQGL+HMGKG L+++P+H+DR +LS A AG++ L A +D K
Sbjct: 741 ASYYHRDQESLFMVRIAQGLLHMGKGTLSVSPFHTDRQVLSNVATAGLLAVLVAMIDAKQ 800
Query: 790 VIVGKYHYVLYFLVLAMQ 807
I K HY+LY++V AM
Sbjct: 801 FITSKSHYLLYWIVTAMH 818
>sp|Q54BC6|PSMD2_DICDI 26S proteasome non-ATPase regulatory subunit 2 OS=Dictyostelium
discoideum GN=psmD2 PE=1 SV=1
Length = 893
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/825 (46%), Positives = 540/825 (65%), Gaps = 58/825 (7%)
Query: 14 KDEASVKVPAKD-PKKKDDKKDED----------------------------LSEEDLAL 44
+ E ++ VPAK K++DKKD LS ED L
Sbjct: 3 QKEVTIPVPAKGGSNKEEDKKDNKDTEEKNTTTNTTTKDNKKDKKKDKKEETLSPEDEKL 62
Query: 45 KQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYET 104
K LEL VER +D + ALE+++TEIR+STSSMTSVPKPLKFLR HY TL Y+
Sbjct: 63 KNDLELLVERSRDEKEEIALAALEALKTEIRSSTSSMTSVPKPLKFLRNHYSTLVDIYKN 122
Query: 105 MPDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEY 164
+ K +ADILSVLA+ + ER++LKY+LLGS I SWGHEYV++LA EI EY
Sbjct: 123 SKEGKAKTSLADILSVLAMA-NGNDERDTLKYKLLGSGEAIASWGHEYVKHLATEIGVEY 181
Query: 165 AKRQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCL 224
++ + S++DL++LV EIV F M HNAEPEA DLL+EVE L + +++D N+ R CL
Sbjct: 182 DIKKEENQSVEDLLKLVDEIVPFQMTHNAEPEACDLLLEVEQLSKIFQYIDENNYSRVCL 241
Query: 225 YLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDD---L 281
YL + Y+PGPDD+ +L + IY+K +++P+AL++A+ + + + + +IF ++ +
Sbjct: 242 YLFKCSYYVPGPDDINILKVCVEIYIKMKQYPDALRVAMKISDPELITEIFKLVENNKSI 301
Query: 282 LRKKQFCYILARHGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKS 341
L+ Q +++AR I VPD+ + ++ DI+NN KLSE ++ LA D+++ EPK
Sbjct: 302 LQ--QLGFLVARQKI--------VPDNFNYDSISDIINNSKLSEYFMNLATDLDIREPKL 351
Query: 342 PEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGN 401
PE+I+++HL S A DSAR NLA++FVNAFVNAGFG+DKLMT D
Sbjct: 352 PEEIFQSHL----DSTSAIADSARMNLASSFVNAFVNAGFGKDKLMTAEEDT-------K 400
Query: 402 WLFKNKEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRN 461
W FKN+E G +S AS GM++LWD+D GL +IDK+ +S + H GAL+ +G++ GIR+
Sbjct: 401 WWFKNRELGILSTVASTGMVVLWDIDGGLTKIDKFLYSQEKHCSNGALMAIGMLTSGIRS 460
Query: 462 DCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAF 521
+ DPAL+LL+E++ + RI AI GLG++YAGTQ + LS L+D K ++ I
Sbjct: 461 EMDPALSLLAEHINSSNTGTRISAIFGLGLAYAGTQRQDLMSLLSPCLDDDKEKMEFIGI 520
Query: 522 SAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATA 581
++LGLI++GSC+ E++ + L+ R + E R + LGLGLLYLGKQ++ E
Sbjct: 521 VGLALGLIFIGSCDPELSTLFVQTLIQRGTAA-SESHARFLHLGLGLLYLGKQDAAELAL 579
Query: 582 EVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMV 641
E K K +Y +T+ +CAYAGTGNVLKVQN+L C+ E + G AVL IA++
Sbjct: 580 ETLKAIEGKGGEYARLTVEACAYAGTGNVLKVQNMLHFCSDGQEN--PHHGLAVLSIALI 637
Query: 642 AMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSE 701
AM EELG +M +R +HLLQ G +I+RA+PLALGLL SNP++ +MD LS+LSHD D E
Sbjct: 638 AMGEELGSDMCLRMFDHLLQKGNVHIKRAIPLALGLLSPSNPRIAIMDILSKLSHDNDPE 697
Query: 702 VAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNP 761
VA A++SLGLIG+GTNNARI GMLR L+ +Y KD +L F VRIAQGL+H+GKG +T+NP
Sbjct: 698 VAQGAILSLGLIGAGTNNARIGGMLRALAVFYGKDVHLFF-VRIAQGLLHLGKGTMTINP 756
Query: 762 YHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAM 806
YHSDR L+SP A+ G++ L A LD+K ++ + HY+ + +V +M
Sbjct: 757 YHSDRTLMSPVAVGGLLALLHAGLDIKNILSTQSHYLFFSIVCSM 801
>sp|P38764|RPN1_YEAST 26S proteasome regulatory subunit RPN1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN1 PE=1 SV=3
Length = 993
Score = 425 bits (1093), Expect = e-118, Method: Compositional matrix adjust.
Identities = 235/611 (38%), Positives = 356/611 (58%), Gaps = 45/611 (7%)
Query: 41 DLALKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKA 100
D LK LEL VER+++ D L + +L +++ I+ STSSMT+VPKPLKFLRP Y L +
Sbjct: 42 DAKLKTDLELLVERLKEDDSSLYEASLNALKESIKNSTSSMTAVPKPLKFLRPTYPDLCS 101
Query: 101 YYETMPDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEI 160
Y+ D +LK +AD+LS+LA+T S G+ +SL+YRLL D WGHEY+R+LA EI
Sbjct: 102 IYDKWTDPNLKSSLADVLSILAMTYSENGKHDSLRYRLLSDVSDFEGWGHEYIRHLALEI 161
Query: 161 AQEY-------AKRQTD---------------EASIDDLMELVQEIVAFHMKHNAEPEAV 198
+ Y A+ +T E S +D + L +IV + +KHN E +AV
Sbjct: 162 GEVYNDQVEKDAEDETSSDGSKSDGSAATSGFEFSKEDTLRLCLDIVPYFLKHNGEEDAV 221
Query: 199 DLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPNA 258
DLL+E+E +D L + VD F+R C Y+ + LP P+D+ L AY IYL E +A
Sbjct: 222 DLLLEIESIDKLPQFVDENTFQRVCQYMVACVPLLPPPEDVAFLKTAYSIYLSQNELTDA 281
Query: 259 LQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLELDDDMVPDDDDRYALQDIV 318
+ +A+ L ++ +F + D + KQ YILA + E + +QDI+
Sbjct: 282 IALAVRLGEEDMIRSVFDATSDPVMHKQLAYILAAQKTSFEYE-----------GVQDII 330
Query: 319 NNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRAS-AGASVDSARQNLAATFVNAFV 377
N KLSE +L LA+++ + PK PEDIYK+HL + ++ + A +DSA+QNLA++FVN F+
Sbjct: 331 GNGKLSEHFLYLAKELNLTGPKVPEDIYKSHLDNSKSVFSSAGLDSAQQNLASSFVNGFL 390
Query: 378 NAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDSGLAQIDKYF 437
N G+ DKL+ + NW++K K G SA AS+G I W++D GL Q+DKY
Sbjct: 391 NLGYCNDKLIV---------DNDNWVYKTKGDGMTSAVASIGSIYQWNLD-GLQQLDKYL 440
Query: 438 HSTDNHVIAGALLGVGIVNCGIRN-DCDPALALLSEYVGREDACIRIGAIMGLGISYAGT 496
+ + V AGALLG+GI G+ + + +PAL LL +YV D I AI+GLGI++AG+
Sbjct: 441 YVDEPEVKAGALLGIGISASGVHDGEVEPALLLLQDYVTNPDTKISSAAILGLGIAFAGS 500
Query: 497 QNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGE 556
+ND++ L I P++ A ++++L ++VG+CN ++ +I+ ++R+ EL
Sbjct: 501 KNDEVLGLLLPIAASTDLPIETAAMASLALAHVFVGTCNGDITTSIMDNFLERTAIELKT 560
Query: 557 PLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNL 616
R + L LG+LY+G+ E V+ E + ++ + SCAY GTG+VL +Q+L
Sbjct: 561 DWVRFLALALGILYMGQGEQVDDVLETISAIEHPMTSAIEVLVGSCAYTGTGDVLLIQDL 620
Query: 617 LGHCAQHHEKG 627
L + KG
Sbjct: 621 LHRLTPKNVKG 631
Score = 169 bits (427), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 123/169 (72%), Gaps = 3/169 (1%)
Query: 634 AVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSR 693
AVLGIA++A+ E++G EM++R HL+ YG ++IRR VPLA+G++ +S+P++ V DTL+R
Sbjct: 739 AVLGIALIALGEDIGKEMSLRHFGHLMHYGNEHIRRMVPLAMGIVSVSDPQMKVFDTLTR 798
Query: 694 LSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMG 753
SHD D EV+M ++ ++GL G+GTNNAR+A +LR L+SYY ++ + LF R+AQGL+H+G
Sbjct: 799 FSHDADLEVSMNSIFAMGLCGAGTNNARLAQLLRQLASYYSREQDALFITRLAQGLLHLG 858
Query: 754 KGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFL 802
KG +T++ ++ D +L+ LA I+TT + ++ K+H + Y L
Sbjct: 859 KGTMTMDVFN-DAHVLNKVTLASILTTAVGLVSPSFML--KHHQLFYML 904
>sp|Q6FPV6|RPN1_CANGA 26S proteasome regulatory subunit RPN1 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=RPN1 PE=3 SV=1
Length = 983
Score = 405 bits (1041), Expect = e-112, Method: Compositional matrix adjust.
Identities = 243/619 (39%), Positives = 365/619 (58%), Gaps = 46/619 (7%)
Query: 24 KDPKKKDDKKDEDLSEE----DLALKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTS 79
KD K DKK + EE D LK LE+ V+ + + D L + L ++ I+ STS
Sbjct: 21 KDETKNKDKKKANEEEELSEEDQKLKGDLEMLVQTLLEDDSKLYETTLTQLKEFIKNSTS 80
Query: 80 SMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTMSAEGERESLKYRLL 139
SMT+VPKPLKFLRP Y L Y+ D D K +AD+LSVLA+T S + +SL++RLL
Sbjct: 81 SMTAVPKPLKFLRPFYPDLCKAYDKWSDKDQKSSLADMLSVLAMTYSDTHQHDSLRFRLL 140
Query: 140 GSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEA--------------------SIDDLME 179
+I SWGHEYVR+LA EI + Y ++ EA S D +++
Sbjct: 141 SDTSNIASWGHEYVRHLALEIGEVYNEQVEKEAEDNSTSTESSPQPPHMNFEFSKDVILQ 200
Query: 180 LVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDM 239
L EIV + MKHN E +AVDLL+E+E ++ L + VD +KR C Y+ + + LP P+D+
Sbjct: 201 LSLEIVPYFMKHNGEEDAVDLLLEIEAIEKLPQFVDENTYKRVCQYMIACVQLLPPPEDI 260
Query: 240 LVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLE 299
L AY IYL + P AL +A+ L N ++ +F + D + +Q YILA + E
Sbjct: 261 SFLQTAYSIYLSELQLPEALSLAIRLGNEDMIRSVFDATSDPIVHQQLAYILAAQRVPFE 320
Query: 300 LDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRAS-AG 358
+ LQ+I+ N KLSE +L LA+++ ++ PK PEDIYK+HL ++ +
Sbjct: 321 HPE-----------LQEIIGNTKLSEHFLYLAKELNLLTPKIPEDIYKSHLDSSKSVFSS 369
Query: 359 ASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASL 418
A +DSA+QNLAA+FVNAF+N G+ DK++T + NW++K K G SA AS+
Sbjct: 370 AGLDSAQQNLAASFVNAFLNLGYCNDKMIT---------DNDNWVYKTKGDGMTSAVASI 420
Query: 419 GMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRED 478
G I W++D GL Q+DKY + + V AG LLG+GI + G+ +D +PAL LL EY+ D
Sbjct: 421 GSIYQWNID-GLQQLDKYLYVDEPEVKAGGLLGIGIASAGVHHDVEPALLLLQEYINHSD 479
Query: 479 ACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEV 538
I AI+G+GI++AG++ND++ L ++++ ++ L++ A +A++L ++VG+CN ++
Sbjct: 480 TKISTAAILGIGIAFAGSKNDEVLGLLLPVVSNTENSLELAAIAALALSHVFVGTCNGDI 539
Query: 539 AQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMT 598
A++ ++R+ EL R + L LGLLYLG+ E V+ E + ++
Sbjct: 540 TTAVMDNFLERTPLELKSEWARFLALSLGLLYLGQGEHVDDVLETINAIEHPMTSAIEVL 599
Query: 599 LLSCAYAGTGNVLKVQNLL 617
+ SCAY TG+VL VQ+LL
Sbjct: 600 ISSCAYTATGDVLLVQDLL 618
Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 121/169 (71%), Gaps = 3/169 (1%)
Query: 634 AVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSR 693
AV+GIA++ M EE+G EM++R HL+ YG ++IRR VPLA+GL+ +++P++ V DTL+R
Sbjct: 729 AVIGIALITMGEEIGKEMSLRHFGHLMHYGNEHIRRMVPLAMGLVSVADPQMKVFDTLTR 788
Query: 694 LSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMG 753
SHD D +V+M ++ ++GL G GTNNAR+A +LR L+SYY ++ + LF R+AQGLVH+G
Sbjct: 789 FSHDPDLDVSMNSIFAMGLCGVGTNNARLAQLLRQLASYYSREQDALFITRLAQGLVHLG 848
Query: 754 KGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFL 802
KG +T++ + +D +L+ LA ++T L + ++ K+H + Y L
Sbjct: 849 KGTMTMDIF-NDAHVLNKVTLASLLTVLVGLISPSFIL--KHHQLFYML 894
>sp|Q8SS65|RPN1_ENCCU 26S proteasome regulatory subunit RPN1 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=RPN1 PE=1 SV=1
Length = 795
Score = 228 bits (580), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 197/760 (25%), Positives = 373/760 (49%), Gaps = 45/760 (5%)
Query: 47 QLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMP 106
+L++ VER+QDPD +Q AL +M ++ S+ S + ++L + L+ + +
Sbjct: 5 ELKIIVERIQDPDIDIQNNAL-NMLFDVTKSSHSKSIDTINFQYLADNLDVLEDVCKRL- 62
Query: 107 DSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAK 166
+ + K+++ DI+S + + + ER+ L YR+ G+ D+ WGH YV+ L G IA K
Sbjct: 63 EGNKKRWLCDIISAICV---VDDERKLLAYRVEGNIIDLKEWGHLYVKKLIGCIAD--VK 117
Query: 167 RQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYL 226
+ ++ +E + F KHNAE EA+D L+EV ++ ++++VD N+ R LYL
Sbjct: 118 NNKMDFPFAKTRDVGRECIDFLFKHNAEFEAIDFLVEVGGIETVLDYVDTHNYNRIVLYL 177
Query: 227 TSAAKYLPGPDDMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQ 286
++ + +L IYLK + + + + + S +D KKQ
Sbjct: 178 EDMNSFVDLEEVIL------KIYLKMGDHSRYVVGLIRRQKSKEAIEYVRSIEDRDYKKQ 231
Query: 287 FCYILARHGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIY 346
YILAR + E D +++Y I++N + + Y + ++E+ +P + I
Sbjct: 232 CLYILARCNLYYE-----ASDPEEKY----ILSNGYIKDVYREIGAELEIDKPSKMDAIL 282
Query: 347 KAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKN 406
K D AS+ A N FV+ G+G+D + S +
Sbjct: 283 KGFKYDKDTRQLASIGIA---------NGFVHMGYGRDPIFLPQEGDSRVPLDYEAILGC 333
Query: 407 KEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRN-DCDP 465
+S S+G+I W+ + + + ++ + ++ +G+ G+RN + P
Sbjct: 334 DVPDLISVFGSIGVIESWNSEKVMETLQEHIFADFSY--RKTGSLLGLALSGLRNFEERP 391
Query: 466 ALALLSEYVGREDACIR-IGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAI 524
A+ L + + I I ++G+ ++GTQ +++R L ++ S +V+ F++
Sbjct: 392 AILALLSNNLQSSSSIHVIATLLGIEAMFSGTQAEEVRELLQPLMFSDSS--EVVFFTSF 449
Query: 525 SLGLIYVGSCNEEVAQAIIFALMDR-SESELGEPLTRLIPLGLGLLYLGKQESVEATAEV 583
+LG ++ GS +E++ ++ +++ ESE R + LGL L+ +++ E+
Sbjct: 450 TLGSVFCGSADEDLTSLMLQTFVEKGKESE--TQFFRFLMLGLASLFYRRKDVECGIMEI 507
Query: 584 SKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAM 643
+ K+ + + Y GTG+ ++++L + + + +L A+V+M
Sbjct: 508 GGALS----KHESILIKGFQYVGTGDSNVIESILTD-SFTGDTDALLESLGLLSCALVSM 562
Query: 644 AEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVA 703
+E +M R + L ++R +PL +L SNP+VNV+D L + + ++
Sbjct: 563 GDETSSQMVGRIVSSSLLLDSSHLRSVLPLCYSILYPSNPQVNVLDMLEKSLNIGETNCI 622
Query: 704 MAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYH 763
++ ++SLGLIG+GT N+RI +L SYYYKD+ +L ++IAQGLV +GKGLL+++P +
Sbjct: 623 ISTIVSLGLIGAGTLNSRITKILDQQYSYYYKDSKVLPVLKIAQGLVSLGKGLLSISPLY 682
Query: 764 SDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLV 803
D+ P G+ +T+F LD + H ++FL+
Sbjct: 683 FDKTTFMPKNTIGLFSTVFMLLDSSISPLVSSHAYMFFLL 722
>sp|P32565|RPN2_YEAST 26S proteasome regulatory subunit RPN2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN2 PE=1 SV=4
Length = 945
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 103/425 (24%), Positives = 193/425 (45%), Gaps = 36/425 (8%)
Query: 369 AATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDS 428
A + N F++AG +D S ++ WL K + K +A ASLG+I ++
Sbjct: 331 AVSVANGFMHAG---------TTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLE 381
Query: 429 GLAQIDKYF---HSTDNHVIAGALLGVGIVNCGIRNDCDPALALL----SEYVGREDACI 481
G + Y ++ + G+L G+G++ G D L + S G ED +
Sbjct: 382 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDV 441
Query: 482 RI-GAIMGLGISYAGTQNDQIRHKLSTIL-NDAKSPLDVIAFSAISLGLIYVGSCNEEVA 539
+ GA +G+G++ G+ N ++ L +L ND+ + + +A+ +GL +G+ E
Sbjct: 442 LLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEA---AALGMGLCMLGTGKPEA- 497
Query: 540 QAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTL 599
I + S+ +TR + +GL L+ G+QE + +E + +Y
Sbjct: 498 ---IHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFT 554
Query: 600 LSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHL 659
++ AYAGTGN V+ LL H A + + AV+ + V + + + R ++ L
Sbjct: 555 IALAYAGTGNNSAVKRLL-HVAVSDSNDDVRRA-AVIALGFVLLRDYTTVP---RIVQLL 609
Query: 660 LQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLI---GSG 716
+ ++R ALG+ C + +D L L+ D V AA+I+L +I +
Sbjct: 610 SKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTE 669
Query: 717 TNNARIAGMLRNLSSYY---YKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTA 773
N ++A + +N S +++ F +AQG+++ G +T+ ++D L +
Sbjct: 670 KLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQLENADTGTLDTKS 729
Query: 774 LAGIV 778
+ G+V
Sbjct: 730 VVGLV 734
>sp|Q75CF3|RPN2_ASHGO 26S proteasome regulatory subunit RPN2 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=RPN2 PE=3 SV=1
Length = 930
Score = 80.9 bits (198), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 97/425 (22%), Positives = 192/425 (45%), Gaps = 38/425 (8%)
Query: 369 AATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDS 428
A + NAF++AG D + ++ WL K + K +A ASLG+I ++
Sbjct: 323 AVSVSNAFMHAGTTDDTFVR---------ANLQWLGKAQNWAKFTATASLGIIHQGNLTG 373
Query: 429 GLAQIDKYF---HSTDNHVIAGALLGVGIVNCGIRNDC-----DPALALLSEYVGREDAC 480
G ++ Y ++ ++ G+L G+G++ G + D + S +
Sbjct: 374 GKKIMEPYLPGSRASSRYIKGGSLYGLGLIYAGYGKEIIGYLKDQIVENSSNATDDDVDV 433
Query: 481 IRIGAIMGLGISYAGTQNDQIRHKLSTIL--NDAKSPLDVIAFSAISLGLIYVGSCNEEV 538
+ GA +G+G++ + + +I L +L + A S A +A+ +GL +GS +E V
Sbjct: 434 LLHGASLGIGLAGMSSNSTEIFEALKEVLYADSANSG----AAAALGIGLTMLGSGDETV 489
Query: 539 AQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMT 598
A+ + + S E+ T+ + + L LL G++E + T + +Y +
Sbjct: 490 AENLYTYAQETSHGEI----TKGLAIALALLNYGREELADETIKKMLEHENDSMRYGAVY 545
Query: 599 LLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEH 658
++ AYAGT + V+ LL H A + + +V + V + + + R +E
Sbjct: 546 TIALAYAGTSSNEAVKKLL-HVAVSDSNDDVRRA-SVTALGFVLIRDYTTVP---RIVEL 600
Query: 659 LLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLI---GS 715
L + ++R ALG+ C +D L L++D V AA+I+L +I +
Sbjct: 601 LSESHNPHVRCGTAFALGVACAGRGLQAAIDVLEPLTNDPVDFVRQAAMIALSMILIQQT 660
Query: 716 GTNNARIAGM---LRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPT 772
N ++ + LRN+ + +++ F +AQG+++ G +T+ +S+ L+
Sbjct: 661 EKTNVKVRDVNEQLRNVIANKHQEGLAKFGACVAQGIINAGGRNVTIQLENSEMGTLNTK 720
Query: 773 ALAGI 777
++ G+
Sbjct: 721 SVIGL 725
>sp|Q6FIP2|RPN2_CANGA 26S proteasome regulatory subunit RPN2 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=RPN2 PE=3 SV=1
Length = 941
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 88/354 (24%), Positives = 153/354 (43%), Gaps = 30/354 (8%)
Query: 369 AATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDS 428
A + N +++AG +D S ++ +WL K + K SA ASLG+I ++
Sbjct: 328 AVSVSNGYMHAG---------TTDNSFIKANLSWLGKAQNWAKFSATASLGVIHKGNLID 378
Query: 429 GLAQIDKYF---HSTDNHVIAGALLGVGIVNCGIRNDC----DPALALLSEYVGREDACI 481
G + Y S+ + G+L G+G++ G D L S G ED +
Sbjct: 379 GKKVMAPYLPGSRSSSRFIKGGSLYGLGLIYAGFGRDIVDYLKTHLIENSGTTGDEDVDV 438
Query: 482 RI-GAIMGLGISYAGTQNDQIRHKLSTIL-NDAKSPLDVIAFSAISLGLIYVGSCNEEVA 539
+ GA +G+G++ GT N+++ L +L ND + + AF +GL +G+ +E
Sbjct: 439 LLHGASLGVGLAAMGTANNEVYEALKDVLYNDVATSGEAAAFG---IGLTLLGTGDETAI 495
Query: 540 QAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTL 599
+ + S + TR + + L L+ G+QE + + + +Y
Sbjct: 496 NDLFTYAQETSHGNI----TRGLSMALALINYGRQEQADELIDKMLASENSLIRYGGAFS 551
Query: 600 LSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHL 659
++ AY GTGN V+ LL H A + + AV + V + + + R ++ L
Sbjct: 552 IALAYVGTGNNKVVKKLL-HLAVSDSNDDVRRA-AVTALGFVLLRDYTTVP---RIVQLL 606
Query: 660 LQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLI 713
+ + R ALG+ C +D L ++ D V AA+ISL L+
Sbjct: 607 AESHNAHDRCGAAFALGIACAGKGLQAAIDVLEPMTKDPADFVRQAAMISLSLV 660
>sp|O74762|RPN2_SCHPO 26S proteasome regulatory subunit rpn2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpn2 PE=1 SV=1
Length = 965
Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 96/407 (23%), Positives = 184/407 (45%), Gaps = 43/407 (10%)
Query: 369 AATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDS 428
A TF NAF+N G D + +WL K K +A A+LG+I +
Sbjct: 350 AVTFANAFMNFGTSSDSFFR---------DNLSWLSKANNWSKFTATAALGVIHRGYYNQ 400
Query: 429 GLAQIDKYFH-----STDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGR-EDACIR 482
+ + Y S+ + GA +G+++ N L E + ED ++
Sbjct: 401 AMNILRPYLPEEDAPSSSTYSEGGAFYAMGLIHA---NHGRGVTEYLREQLKHTEDEIVQ 457
Query: 483 IGAIMGLGISYAGTQNDQIRHKLSTIL-NDAKSPLDVIAFSA--ISLGLIYVGSCNEEVA 539
G ++G+G++ ++++ + + TIL ND + +A SA IS+GLI +G+ +
Sbjct: 458 YGLLLGIGLTGMASRDETLYESVKTILFND-----NAVAGSAAGISMGLIMLGTA----S 508
Query: 540 QAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEAT-AEVSKTFNEKIRKYCDMT 598
A I ++ + E + R + +G+ L+ G+Q+ + E++ + +R Y M
Sbjct: 509 SAAIDEMLQYAHETQHEKIIRGLGIGIALIVYGRQQEADGIIKELNNDLDPTLR-YAGMF 567
Query: 599 LLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEH 658
+ AY GT N V+++L H + + + AV + + + L I ++E
Sbjct: 568 ATALAYCGTSNSKIVRDVL-HISVSDVNDDVRRA-AVCALGFICFKDPNAL---ISTVEL 622
Query: 659 LLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN 718
L+ ++R +ALG+ C ++ +D LSRL D V A+I+ +I + N
Sbjct: 623 LVDSYNPHVRYGSAIALGIACANSGSNAALDLLSRLVEDATDFVRQGAMIAQAMILTQHN 682
Query: 719 ---NARIAGMLRNLSSYY---YKDANLLFCVRIAQGLVHMGKGLLTL 759
N++++G+ ++ ++DA +AQG++ G +T+
Sbjct: 683 DQLNSKVSGIRKHFEQVINEKHEDALAKLGATLAQGIIDAGGRNVTI 729
>sp|Q54JM5|PSMD1_DICDI 26S proteasome non-ATPase regulatory subunit 1 OS=Dictyostelium
discoideum GN=psmD1 PE=1 SV=1
Length = 975
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 83/349 (23%), Positives = 158/349 (45%), Gaps = 33/349 (9%)
Query: 372 FVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDSGLA 431
F NA ++AG +D + S+ WL+K+ K SA +SLG+I + +
Sbjct: 361 FANALMHAGTTRDTFLR---------SNIEWLYKSTHWTKFSAISSLGVINKGHIKESKS 411
Query: 432 QIDKYFHSTDNHVI----AGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIM 487
+ Y + +G+L +G+++ + + + L E + +A + GA +
Sbjct: 412 LLKTYLPGASVNQTPYSESGSLYALGLIHA---SHGEEIIDYLVEKLHINNAILHHGASL 468
Query: 488 GLGISYAGTQNDQIRHKLSTIL-NDAKSPLDVIAFSA--ISLGLIYVGSCNEEVAQAIIF 544
GLG++ T D + L ++L ND D ++ A +++GL+ +GS A+ I
Sbjct: 469 GLGLAAMATGRDDLYEDLKSVLYND-----DAVSGEAAGLAMGLVMLGSG----AKKAIE 519
Query: 545 ALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAY 604
++ + E R + +GL L GK+ES + E + + +Y M ++ AY
Sbjct: 520 EMLAYAHETQHEKTIRSLSMGLAFLMYGKEESADTLIEQMIGDKDPLIRYGGMYAIAFAY 579
Query: 605 AGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGE 664
GTG+ ++ LL H A + ++ + AV I V + E +++ L +
Sbjct: 580 CGTGHNDALRKLL-HVAV-SDGTDSVRRAAVTCIGFVLSRQP---EKCPKAIALLAESYN 634
Query: 665 QNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLI 713
++R ALG+ C + + ++ L L+ D+ V AA IS+ ++
Sbjct: 635 PHVRYGAAFALGIACAGTGQRDALEILKSLTTDSVGYVKQAAWISMAMV 683
>sp|Q18115|PSMD1_CAEEL 26S proteasome non-ATPase regulatory subunit 1 OS=Caenorhabditis
elegans GN=rpn-2 PE=3 SV=4
Length = 965
Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 89/379 (23%), Positives = 163/379 (43%), Gaps = 27/379 (7%)
Query: 401 NWLFKNKEHGKMSAAASLGMILLWDVDSGLAQIDKYF--HSTDNHVI--AGALLGVGIVN 456
NW+ K K +A ASLG+I S + ++ Y S + GA+L G+++
Sbjct: 368 NWVSKATNWNKFNAVASLGLIHHGQESSAMKVLEPYLPKESVEGFGFKEGGAMLAYGLIH 427
Query: 457 CGIRNDCDPALALLSEYVGR-EDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSP 515
++ A++ L++++ E+ +R GA +G G++ G+ + K+ +L ++
Sbjct: 428 A--KHGDATAMSTLAQWLKTAENEPVRHGACLGFGVAGLGSSSVSNYEKVREVLQRDEA- 484
Query: 516 LDVIAFSA-ISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQ 574
V SA I++GLI G N+EV + +D + R I GL G Q
Sbjct: 485 --VSGESAGIAMGLIMAGHLNQEVFNELKQYTVDTQH----DKTQRGIRTGLACAAFGLQ 538
Query: 575 ESVEA-TAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGP 633
E E + + + + +LS AYAGTG+ V+ LL A + +
Sbjct: 539 GDAEPYIKEAIGAKSNPMLRSTGICMLSMAYAGTGSPDVVRRLLEKVAT--DPNLDVKRY 596
Query: 634 AVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSR 693
A +GI V + + + L ++ ++R +ALG+ C + + +
Sbjct: 597 ATIGIGFVLSKDP---STCLSYVAMLTEHFNGHVRYGAAMALGIACAGTGNMEAIALIEP 653
Query: 694 LSHDTDSEVAMAAVISLGLIGSGTNN---ARIAGMLRNLSSYY---YKDANLLFCVRIAQ 747
+ D + V A++SL LI + ++ G + L +D+ + F IAQ
Sbjct: 654 MISDKEGFVRKGALLSLALIMCQQTDYTCPKVNGFRKQLLKKIGEKNEDSLVKFGAIIAQ 713
Query: 748 GLVHMGKGLLTLNPYHSDR 766
GL+ +G + +SD+
Sbjct: 714 GLLDIGGQNAAVTMQNSDK 732
>sp|Q99460|PSMD1_HUMAN 26S proteasome non-ATPase regulatory subunit 1 OS=Homo sapiens
GN=PSMD1 PE=1 SV=2
Length = 953
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/362 (22%), Positives = 154/362 (42%), Gaps = 35/362 (9%)
Query: 362 DSARQNL---AATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASL 418
D+ R ++ A N+F++ G D+ + + WL + K +A ASL
Sbjct: 358 DAVRNSVCHTATVIANSFMHCGTTSDQFLR---------DNLEWLARATNWAKFTATASL 408
Query: 419 GMILLWDVDSGLAQIDKYFHSTDN----HVIAGALLGVGIVNCGIRNDCDPALALLSEYV 474
G+I L + Y + + G L +G+++ + D LL++
Sbjct: 409 GVIHKGHEKEALQLMATYLPKDTSPGSAYQEGGGLYALGLIHA--NHGGDIIDYLLNQLK 466
Query: 475 GREDACIRIGAIMGLGISYAGTQNDQIRHKLSTIL--NDAKSPLDVIAFSAISLGLIYVG 532
+ +R G +GLG++ GT + L T L +DA + + ++LGL+ +G
Sbjct: 467 NASNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTG----EAAGLALGLVMLG 522
Query: 533 SCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIR 592
S N AQAI ++ ++ E + R + +G+ L+ G+ E +A E + I
Sbjct: 523 SKN---AQAI-EDMVGYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPIL 578
Query: 593 KYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPA-VLGIAMVAMAEELGLEM 651
+ M ++ AY G+GN ++ LL H A + + LG + E+ +
Sbjct: 579 RRSGMYTVAMAYCGSGNNKAIRRLL-HVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVV 637
Query: 652 AIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLG 711
++ S + ++R +ALG+ C ++ L +++D + V A+I+
Sbjct: 638 SLLSESY-----NPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASA 692
Query: 712 LI 713
LI
Sbjct: 693 LI 694
>sp|Q5R5S4|PSMD1_PONAB 26S proteasome non-ATPase regulatory subunit 1 OS=Pongo abelii
GN=PSMD1 PE=2 SV=1
Length = 953
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/362 (22%), Positives = 154/362 (42%), Gaps = 35/362 (9%)
Query: 362 DSARQNL---AATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASL 418
D+ R ++ A N+F++ G D+ + + WL + K +A ASL
Sbjct: 358 DAVRNSVCHTATVIANSFMHCGTTSDQFLR---------DNLEWLARATNWAKFTATASL 408
Query: 419 GMILLWDVDSGLAQIDKYFHSTDN----HVIAGALLGVGIVNCGIRNDCDPALALLSEYV 474
G+I L + Y + + G L +G+++ + D LL++
Sbjct: 409 GVIHKGHEKEALQLMATYLPKDTSPGSAYQEGGGLYALGLIHA--NHGGDIIDYLLNQLK 466
Query: 475 GREDACIRIGAIMGLGISYAGTQNDQIRHKLSTIL--NDAKSPLDVIAFSAISLGLIYVG 532
+ +R G +GLG++ GT + L T L +DA + + ++LGL+ +G
Sbjct: 467 NASNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTG----EAAGLALGLVMLG 522
Query: 533 SCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIR 592
S N AQAI ++ ++ E + R + +G+ L+ G+ E +A E + I
Sbjct: 523 SKN---AQAI-EDMVGYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPIL 578
Query: 593 KYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPA-VLGIAMVAMAEELGLEM 651
+ M ++ AY G+GN ++ LL H A + + LG + E+ +
Sbjct: 579 RRSGMYTVAMAYCGSGNNKAIRRLL-HVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVV 637
Query: 652 AIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLG 711
++ S + ++R +ALG+ C ++ L +++D + V A+I+
Sbjct: 638 SLLSESY-----NPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASA 692
Query: 712 LI 713
LI
Sbjct: 693 LI 694
>sp|Q3TXS7|PSMD1_MOUSE 26S proteasome non-ATPase regulatory subunit 1 OS=Mus musculus
GN=Psmd1 PE=1 SV=1
Length = 953
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/362 (22%), Positives = 154/362 (42%), Gaps = 35/362 (9%)
Query: 362 DSARQNL---AATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASL 418
D+ R ++ A N+F++ G D+ + + WL + K +A ASL
Sbjct: 358 DAVRNSVCHTATVIANSFMHCGTTSDQFLR---------DNLEWLARATNWAKFTATASL 408
Query: 419 GMILLWDVDSGLAQIDKYFHSTDN----HVIAGALLGVGIVNCGIRNDCDPALALLSEYV 474
G+I L + Y + + G L +G+++ + D LL++
Sbjct: 409 GVIHKGHEKEALQLMATYLPKDTSPGSAYQEGGGLYALGLIHA--NHGGDIIDYLLNQLK 466
Query: 475 GREDACIRIGAIMGLGISYAGTQNDQIRHKLSTIL--NDAKSPLDVIAFSAISLGLIYVG 532
+ +R G +GLG++ GT + L T L +DA + + ++LGL+ +G
Sbjct: 467 NASNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTG----EAAGLALGLVMLG 522
Query: 533 SCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIR 592
S N AQAI ++ ++ E + R + +G+ L+ G+ E +A E + I
Sbjct: 523 SKN---AQAI-EDMVGYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPIL 578
Query: 593 KYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPA-VLGIAMVAMAEELGLEM 651
+ M ++ AY G+GN ++ LL H A + + LG + E+ +
Sbjct: 579 RRSGMYTVAMAYCGSGNNKAIRRLL-HVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVV 637
Query: 652 AIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLG 711
++ S + ++R +ALG+ C ++ L +++D + V A+I+
Sbjct: 638 SLLSESY-----NPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASA 692
Query: 712 LI 713
LI
Sbjct: 693 LI 694
>sp|Q5F418|PSMD1_CHICK 26S proteasome non-ATPase regulatory subunit 1 OS=Gallus gallus
GN=PSMD1 PE=2 SV=1
Length = 955
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 82/362 (22%), Positives = 154/362 (42%), Gaps = 35/362 (9%)
Query: 362 DSARQNL---AATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASL 418
D+ R ++ A N+F++ G D+ + + WL + K +A ASL
Sbjct: 358 DAVRNSVCHTATVIANSFMHCGTTSDQFLR---------DNLEWLARATNWAKFTATASL 408
Query: 419 GMILLWDVDSGLAQIDKYFHSTDNHVIA----GALLGVGIVNCGIRNDCDPALALLSEYV 474
G+I L + Y + A G L +G+++ + D LL++
Sbjct: 409 GVIHKGHEKEALQLMATYLPKDTSPGSAYQEGGGLYALGLIHA--NHGGDIIDYLLNQLK 466
Query: 475 GREDACIRIGAIMGLGISYAGTQNDQIRHKLSTIL--NDAKSPLDVIAFSAISLGLIYVG 532
+ +R G +GLG++ GT + L T L +DA + + ++LGL+ +G
Sbjct: 467 NASNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTG----EAAGLALGLVMLG 522
Query: 533 SCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIR 592
S N AQAI ++ ++ E + R + +G+ L+ G+ E +A E + I
Sbjct: 523 SKN---AQAI-EDMVGYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPIL 578
Query: 593 KYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPA-VLGIAMVAMAEELGLEM 651
+ M ++ AY G+GN ++ LL H A + + LG + E+ +
Sbjct: 579 RRSGMYTVAMAYCGSGNNKAIRRLL-HVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVV 637
Query: 652 AIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLG 711
++ S + ++R +ALG+ C ++ L +++D + V A+I+
Sbjct: 638 SLLSESY-----NPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASA 692
Query: 712 LI 713
LI
Sbjct: 693 LI 694
>sp|Q8SSH5|RPN2_ENCCU 26S proteasome regulatory subunit RPN2 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=RPN2 PE=1 SV=1
Length = 786
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 82/359 (22%), Positives = 152/359 (42%), Gaps = 38/359 (10%)
Query: 374 NAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDSGLAQI 433
N+ +N G D L ++A G S W K S AS+GMI L++ + +
Sbjct: 281 NSLMNLGTSNDTLYR--NNADIFGQSSEW-------AKFSEVASIGMIHLFNSNP-YEIL 330
Query: 434 DKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDAC---IRIGAIMGLG 490
Y S + GAL+ +G++ G ++ D L ++ ED + G +GLG
Sbjct: 331 KNYLPSEVSQKEGGALMALGLIKAGTFSEEDTEYLLY--FLDTEDTLTPELAYGVCLGLG 388
Query: 491 ISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRS 550
+ G+ N +I +KL + ++ L + S +G++ + S + E+ + +
Sbjct: 389 LINMGSANREILNKLKELSKVDRTLL--VEASVYGMGMLGLNSWSVELLEDL---RTIAG 443
Query: 551 ESELGEPLTRLIPLGLGLLYLGKQESV-----EATAEVSKTFNE------KIRKYCDMTL 599
E+E E + R + + L+ + +E + + NE I + +
Sbjct: 444 ETEF-ERVKRAVGISFSLVLMFSEEMFYDECNASNGDFKNYINELLYDKDSIMRANGVLS 502
Query: 600 LSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHL 659
L A+ GTG + + LL + ++ + + AV+ I +V + ++ + +LE L
Sbjct: 503 LGSAFVGTGRLGVISTLLPYI---NDGDDDVKRAAVIAIGLVCCDDR---DLLVGTLEPL 556
Query: 660 LQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN 718
+ +R AV + LGL + L L +DT+S V +A I +G I N
Sbjct: 557 SENHNFFVRAAVAVVLGLFLSGTGDKVCTNILEALMYDTNSLVRQSACIGVGFITMQCN 615
>sp|O88761|PSMD1_RAT 26S proteasome non-ATPase regulatory subunit 1 OS=Rattus norvegicus
GN=Psmd1 PE=2 SV=1
Length = 953
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 77/362 (21%), Positives = 152/362 (41%), Gaps = 35/362 (9%)
Query: 362 DSARQNL---AATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASL 418
D+ R ++ A N+F++ G D+ + + WL + K +A ASL
Sbjct: 358 DAVRNSVCHTATVIANSFMHCGTTSDQFLR---------DNLEWLARATNWAKFTATASL 408
Query: 419 GMILLWDVDSGLAQIDKYFHSTDN----HVIAGALLGVGIVNCGIRNDCDPALALLSEYV 474
G+I L + Y + + G L +G+++ + D LL++
Sbjct: 409 GVIHKGHEKEALQLMATYLPKDTSPGSAYQEGGGLYALGLIHA--NHGGDIIDYLLNQLK 466
Query: 475 GREDACIRIGAIMGLGISYAGTQNDQIRHKLSTIL--NDAKSPLDVIAFSAISLGLIYVG 532
+ +R G +GLG++ GT + L T L +DA + + ++LGL+ +G
Sbjct: 467 NASNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTG----EAAGLALGLVMLG 522
Query: 533 SCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIR 592
S N + + ++ ++ E + R + +G+ L+ G+ E +A E + I
Sbjct: 523 SKNTQAIEDMV----GYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPIL 578
Query: 593 KYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPA-VLGIAMVAMAEELGLEM 651
+ M ++ AY G+GN ++ LL H A + + LG + E+ +
Sbjct: 579 RRSGMYTVAMAYCGSGNNKAIRRLL-HVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVV 637
Query: 652 AIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLG 711
++ S + ++R +ALG+ C ++ L +++D + V A+I+
Sbjct: 638 SLLSESY-----NPHVRYGAAMALGVCCAGTGNKEAINLLEPMTNDPVNYVRQGALIASA 692
Query: 712 LI 713
LI
Sbjct: 693 LI 694
>sp|Q9V3P6|PSMD1_DROME 26S proteasome non-ATPase regulatory subunit 1 OS=Drosophila
melanogaster GN=Rpn2 PE=1 SV=1
Length = 1020
Score = 38.9 bits (89), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 88/404 (21%), Positives = 160/404 (39%), Gaps = 72/404 (17%)
Query: 369 AATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDS 428
A NAF+++G D+ + D WL + K++A ASLG+I
Sbjct: 383 ATVIANAFMHSGTTSDQFLRDNLD---------WLARATNWAKLTATASLGVIHRGHEKD 433
Query: 429 GLAQIDKYFHS----TDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIG 484
LA + Y + + GAL +G+++ + + LL + ++ +R G
Sbjct: 434 SLALMQSYLPKEAGPSSGYSEGGALYALGLIHAN--HGANIIDYLLQQLKDAQNENVRHG 491
Query: 485 AIMGLGISYAGTQNDQIRHKLSTIL--NDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAI 542
+GLG++ GT + +L L +DA + + I++G++ +GS N AQAI
Sbjct: 492 GCLGLGLAGMGTHRQDLYEQLKFNLYQDDAVTG----EAAGIAMGMVMLGSKN---AQAI 544
Query: 543 IFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSC 602
++ ++ E + R + +G+ L + E + + + + + M ++
Sbjct: 545 -EDMVSYAQETQHEKILRGLAVGISLTMFSRLEEADPLVTSLSSDKDPVLRRSGMYTIAM 603
Query: 603 AYAGTGNVLKVQNLLG---------------------------HC-------AQHHEKGE 628
AY GTG+ ++ LL C A+ +
Sbjct: 604 AYNGTGSNKAIRKLLHVAVSDVNDDVRRAAVTAIGFILFRSPEQCPSVVSLLAESYNPHV 663
Query: 629 AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQN-IRRAVPLALGLLCI-----SN 682
Y LGIA GL AI LE ++++ N +R+ +A ++ I S
Sbjct: 664 RYGAAMALGIACAGT----GLREAIALLEPMVKFDPVNFVRQGALIASAMILIQHTDQSC 719
Query: 683 PKVNVMDTLSRLSHDTDSEVAMA---AVISLGLIGSGTNNARIA 723
PK L E MA A+++ G+I +G NA ++
Sbjct: 720 PKSTFFRQLYAEVISNKHEDVMAKYGAILAQGIIDAGGRNATLS 763
>sp|Q2KID8|CH033_BOVIN UPF0488 protein C8orf33 homolog OS=Bos taurus PE=2 SV=1
Length = 188
Score = 37.0 bits (84), Expect = 0.61, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 13 TKDEASVKVPAKDPKKKDDKKDEDLSEEDLA--LKQQLELYVERV------QDPDPGLQK 64
T+D ASV + +K D K+ LS E A L ++L VE++ Q P P ++
Sbjct: 36 TRDGASVANGSGKTPEKQDPKEAPLSAEAQAEQLARELAWCVEKLELGLKMQRPTPKQKE 95
Query: 65 VALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYE 103
AL + IRT S T +P+ + +R +G +A E
Sbjct: 96 QALGA----IRTLRSQRTPLPRKRQLMRSLFGDYRAQIE 130
>sp|Q3U6N9|CH033_MOUSE UPF0488 protein C8orf33 homolog OS=Mus musculus PE=2 SV=1
Length = 222
Score = 37.0 bits (84), Expect = 0.72, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 5 PNSASGSGTKDEASVKVPAKDPKKKDDKKDEDLSEEDLALKQQLELYVERVQDPDPGLQK 64
PN SG+ ++ S K + + + E L+ E +QLEL + + Q P P ++
Sbjct: 71 PNRVSGTNGSEKPSEKPAPDEAPPSAEAQAEQLARELAWCVEQLELGL-KTQRPTPKQKE 129
Query: 65 VALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKA 100
A+ + IRT S T +P+ + +R +G +A
Sbjct: 130 QAVGA----IRTLRSEKTPLPRKRQLMRSLFGDYRA 161
>sp|Q83FI1|CLPB_TROWT Chaperone protein ClpB OS=Tropheryma whipplei (strain Twist)
GN=clpB PE=3 SV=1
Length = 705
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 96/231 (41%), Gaps = 61/231 (26%)
Query: 16 EASVKVPAKDPKKKDDKK----DEDLSEEDLALKQQLELYVERVQDPDPGLQKVALESMR 71
E +P K +KD K+ +EDLS+ +A QKVA+ +
Sbjct: 391 EGWTGIPVKKLMQKDAKQLLHLEEDLSKSVIA-------------------QKVAIGVIA 431
Query: 72 TEIRTSTSSMTSVPKP---LKFLRPHYGTLKAYYETMPDSDLKKYMADIL---SVLALTM 125
+R S + ++ +P FL P G K + L K +A +L ++ + M
Sbjct: 432 DAVRRSRAGLSDPNRPSGTFLFLGP-TGVGK--------TQLVKALASLLYDGEIVRIDM 482
Query: 126 SAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLMELVQEIV 185
S E+ S+ RL+G+ G GHE AG++ + +R +V
Sbjct: 483 SEYSEKFSIS-RLIGAPP--GYIGHES----AGQLTESVRRRPYS-------------VV 522
Query: 186 AFHMKHNAEPEAVDLLMEVEDLDLLVE-HVDATNFKRTCLYLTS--AAKYL 233
F A PE D+L++V D L + H +F+ T + LTS ++YL
Sbjct: 523 LFDEAEKAHPEVFDILLQVLDEGRLTDSHGRTVDFRNTIIVLTSNIGSRYL 573
>sp|Q83N78|CLPB_TROW8 Chaperone protein ClpB OS=Tropheryma whipplei (strain TW08/27)
GN=clpB PE=3 SV=1
Length = 699
Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 96/231 (41%), Gaps = 61/231 (26%)
Query: 16 EASVKVPAKDPKKKDDKK----DEDLSEEDLALKQQLELYVERVQDPDPGLQKVALESMR 71
E +P K +KD K+ +EDLS+ +A QKVA+ +
Sbjct: 385 EGWTGIPVKKLMQKDAKQLLHLEEDLSKSVIA-------------------QKVAIGVIA 425
Query: 72 TEIRTSTSSMTSVPKP---LKFLRPHYGTLKAYYETMPDSDLKKYMADIL---SVLALTM 125
+R S + ++ +P FL P G K + L K +A +L ++ + M
Sbjct: 426 DAVRRSRAGLSDPNRPSGTFLFLGP-TGVGK--------TQLVKALASLLYDGEIVRIDM 476
Query: 126 SAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLMELVQEIV 185
S E+ S+ RL+G+ G GHE AG++ + +R +V
Sbjct: 477 SEYSEKFSIS-RLIGAPP--GYIGHES----AGQLTESVRRRPYS-------------VV 516
Query: 186 AFHMKHNAEPEAVDLLMEVEDLDLLVE-HVDATNFKRTCLYLTS--AAKYL 233
F A PE D+L++V D L + H +F+ T + LTS ++YL
Sbjct: 517 LFDEAEKAHPEVFDILLQVLDEGRLTDSHGRTVDFRNTIIVLTSNIGSRYL 567
>sp|Q9URV2|APC1_SCHPO Anaphase-promoting complex subunit 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=cut4 PE=1 SV=1
Length = 1458
Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 19/140 (13%)
Query: 446 AGALLGVGIVNCGIRNDCDPALALLSE--YVGREDACIRIGAIMGLGISYAGTQNDQIRH 503
AG L G+G+ N ALA Y+ + IG ++GL SY G+ + ++
Sbjct: 839 AGFLFGLGL------NGHLKALATWHSFIYLTSKHDTTSIGLLLGLASSYLGSMDAKVTK 892
Query: 504 KLSTIL--------NDAK-SPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESEL 554
LS + N+ SPL A + +GL++ SC+ +++ + ++ +ESEL
Sbjct: 893 LLSVHISALLPVGSNELNISPLTQTA-GILGIGLLFHDSCHRRMSEVTMEEILASNESEL 951
Query: 555 GEPLTRLIP-LGLGLLYLGK 573
+L LGL+ LG+
Sbjct: 952 KNEGYKLAAGFSLGLINLGR 971
>sp|Q02645|HTS_DROME Protein hu-li tai shao OS=Drosophila melanogaster GN=hts PE=1 SV=2
Length = 1156
Score = 33.1 bits (74), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 22/145 (15%)
Query: 455 VNCGIRNDCDPALALLSEYVG----REDACIRIGAIMGLGISYAGTQNDQIRHKLSTILN 510
+ C I C P +A+ S G +DAC+ +G I +Y G +++ R++L L
Sbjct: 208 IRCAIYIGCSPVVAISSLKTGLLPLTKDACV-LGEITTH--AYTGLFDEEERNRLVRSLG 264
Query: 511 DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFA--LMDRSESELGEPLTRLIPLGLGL 568
+ + A+ C E + +A A ++ E++L +L+P+GL
Sbjct: 265 PNSKVILLTNHGALC--------CGETIEEAFFAACHIVQACETQL-----KLLPVGLDN 311
Query: 569 LYLGKQESVEATAEVSKTFNEKIRK 593
L L +ES +A E S+ E + K
Sbjct: 312 LVLIPEESRKAIYEQSRRPPEDLEK 336
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 294,686,038
Number of Sequences: 539616
Number of extensions: 12639681
Number of successful extensions: 38958
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 38692
Number of HSP's gapped (non-prelim): 120
length of query: 813
length of database: 191,569,459
effective HSP length: 126
effective length of query: 687
effective length of database: 123,577,843
effective search space: 84897978141
effective search space used: 84897978141
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)