Query 003521
Match_columns 813
No_of_seqs 289 out of 796
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 01:00:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003521.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003521hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2005 26S proteasome regulat 100.0 1E-205 3E-210 1684.5 61.3 776 22-812 24-801 (878)
2 COG5110 RPN1 26S proteasome re 100.0 1E-174 2E-179 1412.2 55.8 776 19-812 20-802 (881)
3 KOG2062 26S proteasome regulat 100.0 2E-134 5E-139 1128.4 45.0 704 48-812 6-746 (929)
4 COG5116 RPN2 26S proteasome re 100.0 2E-111 4E-116 920.6 35.9 703 49-811 7-742 (926)
5 KOG2062 26S proteasome regulat 100.0 4.4E-55 9.6E-60 491.1 32.3 570 114-789 6-660 (929)
6 COG5116 RPN2 26S proteasome re 100.0 7.7E-51 1.7E-55 445.4 26.4 548 150-788 29-656 (926)
7 KOG2005 26S proteasome regulat 100.0 6.7E-39 1.4E-43 357.4 29.6 473 175-718 236-744 (878)
8 COG5110 RPN1 26S proteasome re 100.0 4.6E-33 9.9E-38 305.1 28.8 560 83-718 144-745 (881)
9 KOG1858 Anaphase-promoting com 99.9 6.7E-26 1.4E-30 273.3 19.3 385 405-812 814-1297(1496)
10 PRK09687 putative lyase; Provi 99.2 4.4E-09 9.4E-14 113.8 26.1 244 430-710 25-277 (280)
11 KOG1858 Anaphase-promoting com 99.2 2E-10 4.4E-15 140.8 14.4 346 399-761 839-1317(1496)
12 PRK09687 putative lyase; Provi 99.1 1.9E-08 4E-13 109.0 25.3 244 466-746 24-276 (280)
13 PRK13800 putative oxidoreducta 99.1 3.5E-08 7.7E-13 122.7 29.2 288 407-748 607-895 (897)
14 PRK13800 putative oxidoreducta 98.8 7.6E-07 1.6E-11 111.0 25.3 263 403-711 630-895 (897)
15 TIGR02270 conserved hypothetic 98.3 7.8E-05 1.7E-09 84.9 22.4 221 449-714 45-266 (410)
16 COG1413 FOG: HEAT repeat [Ener 98.2 0.00036 7.9E-09 77.1 25.6 215 466-711 44-269 (335)
17 TIGR02270 conserved hypothetic 98.2 0.00022 4.7E-09 81.3 22.7 221 486-751 45-266 (410)
18 KOG2171 Karyopherin (importin) 98.1 0.031 6.8E-07 69.1 39.5 423 46-548 4-477 (1075)
19 COG1413 FOG: HEAT repeat [Ener 97.8 0.013 2.9E-07 64.7 28.4 263 429-726 44-313 (335)
20 PF01851 PC_rep: Proteasome/cy 97.7 4.7E-05 1E-09 56.4 4.2 35 670-704 1-35 (35)
21 PF01851 PC_rep: Proteasome/cy 97.7 3.8E-05 8.3E-10 56.9 3.7 30 484-513 1-30 (35)
22 PF13646 HEAT_2: HEAT repeats; 97.7 0.0002 4.3E-09 62.9 8.5 86 614-711 2-88 (88)
23 PF13646 HEAT_2: HEAT repeats; 97.5 0.00079 1.7E-08 59.1 9.3 87 653-748 2-88 (88)
24 KOG0567 HEAT repeat-containing 97.5 0.025 5.4E-07 60.1 21.7 239 430-715 38-280 (289)
25 KOG0166 Karyopherin (importin) 97.2 0.033 7.2E-07 64.6 21.5 241 468-719 112-397 (514)
26 PLN03200 cellulose synthase-in 97.2 0.16 3.5E-06 67.6 28.9 280 427-718 403-726 (2102)
27 PTZ00429 beta-adaptin; Provisi 97.0 0.21 4.5E-06 61.4 26.6 269 431-716 108-398 (746)
28 PF01602 Adaptin_N: Adaptin N 97.0 0.036 7.8E-07 64.9 19.5 80 651-733 267-348 (526)
29 PF01602 Adaptin_N: Adaptin N 96.9 0.18 3.8E-06 59.1 24.5 293 409-715 57-369 (526)
30 PLN03200 cellulose synthase-in 96.7 0.4 8.6E-06 64.1 27.2 270 406-688 458-772 (2102)
31 TIGR02917 PEP_TPR_lipo putativ 96.3 4.1 8.8E-05 49.7 45.5 305 421-754 578-886 (899)
32 KOG1824 TATA-binding protein-i 96.1 0.42 9.2E-06 58.4 20.4 266 467-789 820-1102(1233)
33 TIGR02917 PEP_TPR_lipo putativ 96.1 5.3 0.00012 48.7 40.6 257 417-699 608-869 (899)
34 PRK11788 tetratricopeptide rep 96.1 3.3 7.1E-05 46.2 28.6 281 421-718 46-332 (389)
35 KOG0567 HEAT repeat-containing 95.8 0.93 2E-05 48.5 18.9 234 400-678 38-278 (289)
36 PF12755 Vac14_Fab1_bd: Vacuol 95.6 0.035 7.5E-07 50.9 6.8 78 630-707 2-89 (97)
37 PF13513 HEAT_EZ: HEAT-like re 95.5 0.03 6.6E-07 45.1 5.3 48 665-712 1-54 (55)
38 COG5064 SRP1 Karyopherin (impo 95.4 0.72 1.6E-05 50.8 16.9 240 471-719 120-402 (526)
39 PTZ00429 beta-adaptin; Provisi 95.3 11 0.00024 46.7 35.9 332 408-752 119-546 (746)
40 KOG2171 Karyopherin (importin) 94.7 6.6 0.00014 49.5 24.3 85 629-714 324-417 (1075)
41 PRK10049 pgaA outer membrane p 94.1 21 0.00045 44.5 29.1 178 568-757 247-443 (765)
42 PRK11788 tetratricopeptide rep 93.9 13 0.00028 41.4 27.9 250 450-718 41-296 (389)
43 smart00638 LPD_N Lipoprotein N 93.8 1.4 3.1E-05 52.6 16.3 175 567-746 349-539 (574)
44 KOG2023 Nuclear transport rece 93.2 5.6 0.00012 47.6 18.7 122 633-757 590-737 (885)
45 COG5064 SRP1 Karyopherin (impo 93.2 3.7 8.1E-05 45.4 16.2 250 439-719 126-428 (526)
46 COG5240 SEC21 Vesicle coat com 92.9 11 0.00024 44.4 20.2 162 449-622 208-382 (898)
47 cd00020 ARM Armadillo/beta-cat 92.6 0.72 1.6E-05 41.9 8.9 98 613-713 9-118 (120)
48 KOG1078 Vesicle coat complex C 92.0 7.8 0.00017 47.1 18.2 273 430-714 247-531 (865)
49 KOG0166 Karyopherin (importin) 91.5 1.5 3.2E-05 51.4 11.4 168 577-755 111-311 (514)
50 COG5096 Vesicle coat complex, 90.6 0.99 2.1E-05 55.1 9.3 87 628-716 106-196 (757)
51 smart00638 LPD_N Lipoprotein N 90.6 6.5 0.00014 47.0 16.3 197 573-781 324-541 (574)
52 PF01347 Vitellogenin_N: Lipop 90.5 4.2 9.1E-05 49.0 14.8 210 324-564 346-581 (618)
53 PF12348 CLASP_N: CLASP N term 89.9 5 0.00011 41.7 12.9 66 651-716 131-207 (228)
54 PF05004 IFRD: Interferon-rela 89.8 19 0.00042 39.8 18.0 51 629-679 201-256 (309)
55 KOG1824 TATA-binding protein-i 89.7 57 0.0012 41.0 22.5 285 440-729 582-900 (1233)
56 KOG1060 Vesicle coat complex A 89.7 30 0.00064 42.5 20.0 95 431-529 111-207 (968)
57 COG5096 Vesicle coat complex, 89.7 1.8 4E-05 52.8 10.5 61 654-714 95-155 (757)
58 PRK12370 invasion protein regu 89.5 45 0.00098 39.8 22.2 208 500-731 322-534 (553)
59 KOG4224 Armadillo repeat prote 89.0 20 0.00042 40.4 16.7 86 442-529 184-278 (550)
60 PF01347 Vitellogenin_N: Lipop 89.0 3.6 7.8E-05 49.6 12.6 203 531-744 356-581 (618)
61 COG5240 SEC21 Vesicle coat com 87.1 50 0.0011 39.3 19.1 270 447-735 286-584 (898)
62 KOG1059 Vesicle coat complex A 86.4 90 0.002 38.2 21.8 247 442-713 87-364 (877)
63 PF02985 HEAT: HEAT repeat; I 85.7 1.3 2.9E-05 31.5 3.8 26 688-713 2-27 (31)
64 PF12717 Cnd1: non-SMC mitotic 85.6 7.2 0.00016 39.4 10.6 89 628-716 2-93 (178)
65 PRK15174 Vi polysaccharide exp 85.5 99 0.0022 37.9 29.0 269 406-700 72-351 (656)
66 PF13513 HEAT_EZ: HEAT-like re 85.1 1.6 3.5E-05 34.9 4.6 49 629-677 2-54 (55)
67 PF05004 IFRD: Interferon-rela 84.9 36 0.00078 37.7 16.5 105 440-544 55-174 (309)
68 cd05804 StaR_like StaR_like; a 84.8 66 0.0014 35.2 24.3 270 412-693 45-332 (355)
69 PRK15174 Vi polysaccharide exp 83.8 1.2E+02 0.0025 37.3 28.8 279 418-719 50-333 (656)
70 cd00020 ARM Armadillo/beta-cat 82.5 3.6 7.8E-05 37.2 6.4 65 653-718 10-81 (120)
71 KOG0211 Protein phosphatase 2A 81.6 18 0.0004 44.7 13.5 125 611-738 557-688 (759)
72 KOG0915 Uncharacterized conser 79.6 26 0.00056 45.8 14.0 158 577-738 819-1011(1702)
73 KOG2259 Uncharacterized conser 78.8 53 0.0012 39.7 15.3 267 436-732 206-495 (823)
74 COG3118 Thioredoxin domain-con 77.8 1.2E+02 0.0026 33.6 18.1 184 530-732 113-302 (304)
75 PRK12370 invasion protein regu 76.4 1.8E+02 0.0038 34.8 22.6 252 427-701 278-539 (553)
76 PRK10049 pgaA outer membrane p 76.2 2.1E+02 0.0046 35.7 29.1 167 564-739 278-463 (765)
77 KOG1517 Guanine nucleotide bin 75.8 6.7 0.00015 49.1 7.3 88 629-716 572-672 (1387)
78 PF03130 HEAT_PBS: PBS lyase H 75.6 3.1 6.6E-05 28.9 2.7 27 667-697 1-27 (27)
79 PF04826 Arm_2: Armadillo-like 74.3 50 0.0011 35.6 12.9 70 650-719 12-87 (254)
80 KOG4653 Uncharacterized conser 74.2 1.1E+02 0.0025 38.1 16.7 166 435-608 734-921 (982)
81 KOG1061 Vesicle coat complex A 74.1 1.7E+02 0.0036 36.2 18.1 260 438-716 96-380 (734)
82 TIGR02521 type_IV_pilW type IV 72.4 1E+02 0.0022 30.3 19.3 18 599-616 140-157 (234)
83 PF10508 Proteasom_PSMB: Prote 72.2 2.1E+02 0.0046 33.9 26.7 82 658-739 297-393 (503)
84 KOG0213 Splicing factor 3b, su 72.1 2.6E+02 0.0055 34.8 44.7 213 34-270 352-629 (1172)
85 PF02985 HEAT: HEAT repeat; I 71.6 5.9 0.00013 28.1 3.5 25 654-678 3-27 (31)
86 KOG2025 Chromosome condensatio 71.6 96 0.0021 38.0 15.1 170 537-710 81-289 (892)
87 smart00299 CLH Clathrin heavy 71.5 35 0.00075 32.5 10.0 48 241-288 84-132 (140)
88 COG5181 HSH155 U2 snRNP splice 70.1 2E+02 0.0044 34.8 16.9 183 435-625 695-893 (975)
89 smart00567 EZ_HEAT E-Z type HE 67.8 7.5 0.00016 27.2 3.3 29 666-698 2-30 (30)
90 PF12717 Cnd1: non-SMC mitotic 65.1 79 0.0017 31.8 11.4 90 441-532 1-93 (178)
91 KOG1060 Vesicle coat complex A 64.0 3.8E+02 0.0081 33.6 23.3 88 407-494 121-209 (968)
92 KOG1061 Vesicle coat complex A 62.8 36 0.00078 41.6 9.6 102 612-718 87-192 (734)
93 cd06561 AlkD_like A new struct 61.8 1.3E+02 0.0029 30.2 12.6 76 654-730 108-184 (197)
94 PF04053 Coatomer_WDAD: Coatom 61.8 57 0.0012 38.1 10.9 39 240-278 390-428 (443)
95 PF12755 Vac14_Fab1_bd: Vacuol 61.3 25 0.00053 32.2 6.3 79 667-745 2-90 (97)
96 PRK09782 bacteriophage N4 rece 60.4 4.9E+02 0.011 33.8 23.6 223 445-694 476-703 (987)
97 KOG2025 Chromosome condensatio 60.0 61 0.0013 39.5 10.6 48 661-708 136-186 (892)
98 KOG0212 Uncharacterized conser 59.1 1.1E+02 0.0024 36.5 12.2 164 604-781 31-217 (675)
99 KOG1943 Beta-tubulin folding c 57.8 5.3E+02 0.012 33.3 18.7 73 437-509 350-425 (1133)
100 COG5181 HSH155 U2 snRNP splice 57.4 4.3E+02 0.0094 32.2 38.1 269 415-704 591-901 (975)
101 PF08713 DNA_alkylation: DNA a 57.3 44 0.00096 34.1 8.2 76 651-728 120-196 (213)
102 COG5098 Chromosome condensatio 53.1 27 0.00059 42.2 6.3 90 628-717 910-1003(1128)
103 KOG0985 Vesicle coat protein c 52.9 95 0.0021 39.5 10.8 73 217-289 1034-1112(1666)
104 KOG0915 Uncharacterized conser 51.1 2.9E+02 0.0062 37.0 14.9 236 430-706 820-1101(1702)
105 PF09384 UTP15_C: UTP15 C term 50.5 94 0.002 30.6 8.8 66 183-251 23-109 (148)
106 KOG1062 Vesicle coat complex A 50.4 6.1E+02 0.013 31.8 19.9 241 429-671 314-572 (866)
107 KOG4224 Armadillo repeat prote 49.6 1.3E+02 0.0028 34.3 10.3 66 654-719 211-284 (550)
108 TIGR02521 type_IV_pilW type IV 48.8 2.7E+02 0.0058 27.2 17.9 15 423-437 44-58 (234)
109 KOG2076 RNA polymerase III tra 48.0 6.2E+02 0.013 32.1 16.6 55 34-105 132-186 (895)
110 KOG1240 Protein kinase contain 47.5 8E+02 0.017 32.4 24.9 125 577-706 579-716 (1431)
111 PF04762 IKI3: IKI3 family; I 46.9 2.5E+02 0.0055 36.0 14.0 52 178-230 694-760 (928)
112 TIGR03302 OM_YfiO outer membra 46.2 3.5E+02 0.0075 27.7 14.2 75 420-495 43-119 (235)
113 PF12460 MMS19_C: RNAPII trans 46.0 3.8E+02 0.0081 30.8 14.2 88 629-719 250-356 (415)
114 PF04053 Coatomer_WDAD: Coatom 45.5 2.1E+02 0.0046 33.5 12.1 107 180-292 297-416 (443)
115 PF12719 Cnd3: Nuclear condens 45.4 2.9E+02 0.0062 30.2 12.6 85 629-713 42-141 (298)
116 PF13429 TPR_15: Tetratricopep 43.9 1E+02 0.0022 32.9 8.7 136 572-718 124-262 (280)
117 PF12711 Kinesin-relat_1: Kine 43.8 1.4E+02 0.0029 27.1 7.8 62 36-121 21-82 (86)
118 PF11768 DUF3312: Protein of u 42.7 1.6E+02 0.0035 35.1 10.4 94 184-277 414-532 (545)
119 PF04840 Vps16_C: Vps16, C-ter 42.5 5.3E+02 0.011 28.8 18.4 223 36-279 38-302 (319)
120 KOG2114 Vacuolar assembly/sort 42.2 5.2E+02 0.011 32.6 14.6 67 172-238 362-432 (933)
121 KOG0211 Protein phosphatase 2A 41.8 1E+02 0.0022 38.5 9.0 102 650-752 557-664 (759)
122 KOG3617 WD40 and TPR repeat-co 41.6 1.1E+02 0.0024 38.1 9.0 98 179-276 1081-1183(1416)
123 KOG2023 Nuclear transport rece 40.5 47 0.001 40.2 5.6 120 408-529 368-503 (885)
124 KOG1240 Protein kinase contain 39.6 2E+02 0.0043 37.5 10.9 132 433-570 583-723 (1431)
125 PF09976 TPR_21: Tetratricopep 39.2 3.5E+02 0.0076 25.8 13.6 91 518-614 46-138 (145)
126 PF10363 DUF2435: Protein of u 38.8 1.9E+02 0.004 26.3 8.1 81 430-511 5-88 (92)
127 COG5218 YCG1 Chromosome conden 38.5 6.8E+02 0.015 30.5 14.3 154 537-694 87-280 (885)
128 PF11698 V-ATPase_H_C: V-ATPas 38.4 76 0.0017 30.3 5.8 29 687-715 87-115 (119)
129 KOG1125 TPR repeat-containing 37.7 1E+02 0.0023 36.7 7.8 138 59-206 365-526 (579)
130 PF03130 HEAT_PBS: PBS lyase H 37.1 64 0.0014 22.2 3.8 24 519-546 2-25 (27)
131 KOG2973 Uncharacterized conser 36.6 49 0.0011 36.7 4.7 78 35-121 231-313 (353)
132 PF06957 COPI_C: Coatomer (COP 36.3 65 0.0014 37.3 5.9 124 153-290 201-359 (422)
133 TIGR00540 hemY_coli hemY prote 36.2 7E+02 0.015 28.4 21.5 24 562-585 267-290 (409)
134 smart00185 ARM Armadillo/beta- 34.7 61 0.0013 23.4 3.7 27 48-74 14-40 (41)
135 PF12725 DUF3810: Protein of u 34.4 31 0.00068 38.4 2.9 84 111-195 212-303 (318)
136 KOG1820 Microtubule-associated 34.3 6E+02 0.013 32.2 14.0 81 650-730 370-458 (815)
137 PF12348 CLASP_N: CLASP N term 33.9 4.3E+02 0.0094 27.1 11.3 90 662-751 105-205 (228)
138 KOG0414 Chromosome condensatio 33.5 71 0.0015 41.0 5.9 87 628-714 937-1026(1251)
139 PF10363 DUF2435: Protein of u 33.2 2E+02 0.0044 26.0 7.4 44 685-728 42-85 (92)
140 PF09551 Spore_II_R: Stage II 32.6 58 0.0013 31.6 4.0 49 37-103 14-62 (130)
141 PF05918 API5: Apoptosis inhib 32.3 1.1E+02 0.0023 36.9 6.9 104 610-716 58-165 (556)
142 PF10508 Proteasom_PSMB: Prote 29.9 9.9E+02 0.022 28.3 24.7 236 433-679 82-365 (503)
143 KOG0292 Vesicle coat complex C 29.9 1.6E+02 0.0035 37.0 7.9 86 198-291 1047-1144(1202)
144 PF00514 Arm: Armadillo/beta-c 29.7 93 0.002 23.2 4.0 27 48-74 14-40 (41)
145 cd05804 StaR_like StaR_like; a 29.6 7.6E+02 0.016 26.8 25.5 166 442-620 41-212 (355)
146 TIGR02837 spore_II_R stage II 29.4 67 0.0014 32.5 4.0 52 35-104 47-98 (168)
147 KOG1517 Guanine nucleotide bin 29.1 1.8E+02 0.004 37.2 8.2 102 616-718 600-735 (1387)
148 cd06561 AlkD_like A new struct 28.6 1.7E+02 0.0036 29.4 7.0 65 629-696 120-185 (197)
149 TIGR00990 3a0801s09 mitochondr 28.5 1.1E+03 0.024 28.3 28.1 179 424-616 308-489 (615)
150 PF04826 Arm_2: Armadillo-like 28.5 3.5E+02 0.0076 29.2 9.6 76 611-689 12-92 (254)
151 PF11239 DUF3040: Protein of u 28.5 59 0.0013 28.7 3.1 25 36-63 2-26 (82)
152 TIGR00540 hemY_coli hemY prote 28.0 9.3E+02 0.02 27.3 23.9 287 411-719 83-385 (409)
153 TIGR02795 tol_pal_ybgF tol-pal 28.0 2.5E+02 0.0054 24.8 7.4 82 650-731 19-104 (119)
154 KOG1020 Sister chromatid cohes 27.9 4.2E+02 0.0092 35.5 11.3 36 683-718 1222-1257(1692)
155 PF14668 RICTOR_V: Rapamycin-i 27.7 96 0.0021 27.1 4.2 52 601-655 10-69 (73)
156 PF08625 Utp13: Utp13 specific 27.6 67 0.0015 31.5 3.6 32 247-278 5-36 (141)
157 KOG0414 Chromosome condensatio 26.9 1.4E+03 0.031 30.1 15.3 84 33-124 345-429 (1251)
158 PF13429 TPR_15: Tetratricopep 26.6 7.1E+02 0.015 26.4 11.8 133 530-673 120-256 (280)
159 KOG2280 Vacuolar assembly/sort 26.2 5.9E+02 0.013 31.7 11.6 97 173-291 489-585 (829)
160 PF09976 TPR_21: Tetratricopep 26.1 4.5E+02 0.0097 25.1 9.1 15 533-547 24-38 (145)
161 PF12719 Cnd3: Nuclear condens 26.0 8.8E+02 0.019 26.4 12.6 142 45-190 63-207 (298)
162 PF09295 ChAPs: ChAPs (Chs5p-A 26.0 4.6E+02 0.01 30.2 10.5 39 159-203 187-225 (395)
163 TIGR03302 OM_YfiO outer membra 25.8 7.2E+02 0.016 25.3 16.4 27 522-548 72-98 (235)
164 PF07539 DRIM: Down-regulated 25.8 88 0.0019 30.7 4.1 45 50-107 21-65 (141)
165 PHA03033 hypothetical protein; 25.3 34 0.00073 32.8 1.0 52 45-102 77-139 (142)
166 KOG1242 Protein containing ada 25.0 1.3E+03 0.028 28.0 21.8 277 430-715 136-444 (569)
167 PRK11447 cellulose synthase su 24.5 1.7E+03 0.037 29.2 51.6 288 416-732 389-700 (1157)
168 KOG1077 Vesicle coat complex A 24.2 1.5E+03 0.032 28.4 24.2 92 637-729 313-413 (938)
169 PF00514 Arm: Armadillo/beta-c 24.1 1.1E+02 0.0023 22.8 3.4 26 687-712 13-38 (41)
170 KOG2066 Vacuolar assembly/sort 23.4 4.2E+02 0.0091 33.1 9.7 33 240-272 506-538 (846)
171 KOG1943 Beta-tubulin folding c 23.3 1.8E+03 0.038 29.0 18.0 231 466-715 342-611 (1133)
172 COG5218 YCG1 Chromosome conden 22.9 7.9E+02 0.017 30.0 11.4 114 589-707 65-191 (885)
173 PF13170 DUF4003: Protein of u 22.7 1.1E+03 0.023 26.1 13.5 176 64-269 35-233 (297)
174 PLN03081 pentatricopeptide (PP 22.2 1.5E+03 0.032 27.7 35.7 223 420-663 335-558 (697)
175 PF13934 ELYS: Nuclear pore co 22.1 3.2E+02 0.0069 28.8 7.8 89 186-278 86-182 (226)
176 PF01122 Cobalamin_bind: Eukar 22.0 5.8E+02 0.013 28.7 10.0 153 630-782 94-291 (326)
177 KOG4766 Uncharacterized conser 21.4 78 0.0017 26.5 2.3 19 31-49 16-34 (64)
178 PF11701 UNC45-central: Myosin 21.2 2.2E+02 0.0048 28.2 6.0 65 48-121 88-157 (157)
No 1
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-205 Score=1684.46 Aligned_cols=776 Identities=64% Similarity=0.990 Sum_probs=747.4
Q ss_pred CCCCCCCCCCccccCCCHHHHHhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHH
Q 003521 22 PAKDPKKKDDKKDEDLSEEDLALKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAY 101 (813)
Q Consensus 22 ~~~~~~~~~~~~~~~lseed~~lk~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ 101 (813)
+.++.++|+++|||+|||||+|||++||++|+|++|+|++|+++||++|+++||+|||||||||||||||||||++|+++
T Consensus 24 ~~k~~~~k~~~k~e~lSEED~~lk~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i 103 (878)
T KOG2005|consen 24 PNKKNKKKDKDKEEDLSEEDLQLKGDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEI 103 (878)
T ss_pred CccccccccchhhhhccHHHHHhhhhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHH
Confidence 34444566677789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcchHHHHHHHHHHHHhhccccccccchhhhhcCCCCCCCCcccHHHHHHHHHHHHHHHHhccCccCHHHHHHHH
Q 003521 102 YETMPDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLMELV 181 (813)
Q Consensus 102 ye~~~~~~~k~~~AdilS~l~~t~~~~~~~~~L~y~L~~~~~d~~~wgheYvr~l~~~i~~~y~~~~~~~~~~~~L~~lv 181 (813)
|++|.+++.|+++|||+|||+|||+. ..+.|+|||.|+..|+++|||||||||++||.++|+++..+.+..++|..|+
T Consensus 104 ~~~~~~~n~Kk~laDIlSvLamt~se--~~~~l~YRl~G~~~d~~~WGHeYVRhLageIaee~~~~~~e~~~~~dl~~l~ 181 (878)
T KOG2005|consen 104 YESMADSNLKKWLADILSVLAMTMSE--RGEHLAYRLLGSIIDLGSWGHEYVRHLAGEIAEEYNNREMEAPSKADLLDLV 181 (878)
T ss_pred HHhccCchhHhHHHHHHHHHheeecc--cchheeeeeccccCChhhhHHHHHHHHHHHHHHHHhhccccccchHHHHHHH
Confidence 99999999999999999999999984 4567999999999999999999999999999999999665556689999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhcCChhhhHHHhhccChHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 003521 182 QEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPNALQI 261 (813)
Q Consensus 182 ~~iv~~~l~~n~e~eAvdlalE~~~ld~i~~~vd~~~~~rv~~Yl~~~~~~~~~p~~~~vl~~~~~iy~~~~~~~~al~~ 261 (813)
.+||+||||||+|.||||+++|+++||++.+|||++||+|+|+|+.+|++++|+|+|..++++++.||+|+++|++|+++
T Consensus 182 ~~iV~f~mkHNAE~eAiDlL~Eve~id~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~al~~ 261 (878)
T KOG2005|consen 182 QEIVPFHMKHNAEFEAIDLLMEVEGIDLLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPRALVG 261 (878)
T ss_pred HHHHHHHHhccchhHHHHHHHHhhhHhHHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCChHHHHHHHHhcchHHHHHHHHHHHHhhcccccccCCCCCCcchHHHHHHHHcccCcchhHHHHHHHhhccCCCC
Q 003521 262 ALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKS 341 (813)
Q Consensus 262 al~l~d~~~i~~i~~~~~d~~~~~Qlaf~larq~~~~~~~~~~~~~~~~~~~l~~il~n~~l~~~~~~~~~~l~i~~~k~ 341 (813)
||+++|.+.|+++|.+|+|+.++||+||+||||++.++..+ ++.+++|++|.+++++|+++++|+++++||+
T Consensus 262 ai~l~~~~~v~~vf~s~~D~~~kKQ~~ymLaR~~i~~e~~~--------~e~l~di~sN~~Lse~f~~LarELeimepk~ 333 (878)
T KOG2005|consen 262 AIRLDDMKEVKEVFTSCTDPLLKKQMAYMLARHGIYFELSE--------DEELQDILSNGKLSEHFLYLARELEIMEPKV 333 (878)
T ss_pred HHhcCcHHHHHHHHHhccCHHHHHHHHHHHHhcCCceecCc--------CHHHHHHHccccHHHHHHHHHHHhcccCCCC
Confidence 99999999999999999999999999999999999998742 4789999999999999999999999999999
Q ss_pred hHHHHHhhhccCCCCcCcchhHHHHhHHHHHHHHHHhcccCCccccccCCCCCCCCCCCccccccchhhHHHHHHHhhhh
Q 003521 342 PEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMI 421 (813)
Q Consensus 342 ~e~iyK~~l~~~r~~~~~~~dsa~~~la~~~~na~vnaG~~~D~~l~~~~~~~~~~~~~~wl~k~~~~~k~sA~aslGlI 421 (813)
||+|||+|++++|...++++||||||+|++|||||||+|||+||+|.+..+ +..+|+|||+++++.+|+||+|+|
T Consensus 334 pedIyK~hl~~~r~~s~a~vdSarqnla~~fvNgFVn~Gyg~Dkl~~~~~~-----s~~~w~yknke~g~~sa~aS~G~I 408 (878)
T KOG2005|consen 334 PEDIYKSHLEDSRGGSGAGVDSARQNLAATFVNGFVNAGYGQDKLMLVQEG-----SRVNWLYKNKEHGMTSAAASLGMI 408 (878)
T ss_pred hHHHHHHHHhccccccccCccHHHHHHHHHHHHHHhhcccCCCceeccCcc-----ccCcceeeccccCchHhhhhcchh
Confidence 999999999998966678999999999999999999999999999998753 456799999999999999999999
Q ss_pred cccccchhHHhHhhhhcCCChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCHHH
Q 003521 422 LLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQI 501 (813)
Q Consensus 422 ~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~e~i 501 (813)
.+||+|.|++++++|++++++|+|+||++|+|++++|+++||||++++|++|+.+++..+|+||++|||++|+||+++++
T Consensus 409 ~~Wnvd~gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V 488 (878)
T KOG2005|consen 409 QLWNVDKGLEQLDKYLYSDESYIKAGALLGIGISNSGVFNECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEV 488 (878)
T ss_pred heecchhhHHHHHHHhhcCCchhhhccceeeeeeccccccccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCccccCchhHHHHHHHHHHhhcCChhhHHHHH
Q 003521 502 RHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATA 581 (813)
Q Consensus 502 ~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~lG~~e~~~~~i 581 (813)
...|.|++.|++.++|+.++|+|+||+||+||||+++++.|++++|++.++++.+.|.||+++|+|++|+|++|.+|++.
T Consensus 489 ~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~LGL~llflgkqe~~d~~~ 568 (878)
T KOG2005|consen 489 LELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQESVDAVV 568 (878)
T ss_pred HHHHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhcccchHHHHH
Confidence 99999999988888999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhHHHHHHHHhcCCCHHHH--HHHHhhhcccCCCCcchhhHHHHHHHHhhccchhhHHHHHHHHHHH
Q 003521 582 EVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKV--QNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHL 659 (813)
Q Consensus 582 ~~L~~~~~p~~r~~~~~~~glAyaGTGn~~~i--q~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e~~~~~l~~L 659 (813)
+.++++++|+.++..+++.+|||+||||+.+| |.++|+|.+|..+.+..+..||+|+|+|+||+++|++|+.|+|+|+
T Consensus 569 e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~lR~f~h~ 648 (878)
T KOG2005|consen 569 ETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQSQLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEMVLRHFGHL 648 (878)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhccccCceEEechhhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999 8899999999876555677999999999999999999999999999
Q ss_pred hhcCChhHHhHHHHHHhhhccCCCchhHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHHhhhhccChhh
Q 003521 660 LQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANL 739 (813)
Q Consensus 660 ~~~~~~~VR~g~~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~Lr~l~~~~~~d~~~ 739 (813)
++|++|+||+++|+|+|++|+|||+.+|+|+|++++||.|.+|..+||||||+|||||||+|++++||||+|||+||+++
T Consensus 649 l~yge~~iRravPLal~llsvSNPq~~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNARla~mLrqlaSYyyKd~~~ 728 (878)
T KOG2005|consen 649 LHYGEPHIRRAVPLALGLLSVSNPQVNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNARLAQMLRQLASYYYKDSKA 728 (878)
T ss_pred HHcCCHHHHHHHHHHHhhhccCCCcchHHHHHHHhccCcchHHHHHHHHHhccccCCcchHHHHHHHHHHHHHHhccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcCCCcccccccCCCCCCCChHHHHHHHHHHhhhcccccccccchhHHHHHHhhhhcccccC
Q 003521 740 LFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQNVTDC 812 (813)
Q Consensus 740 ~f~~~lAqGll~~G~g~~tlsp~~sd~~~~~~~a~~gL~~~l~~~ld~~~~i~~~~~~l~~~l~~a~~Pr~l~ 812 (813)
+|.+||||||+|+|||++|++|+|+||++++|+|+|||++++++|+|++.+++.++||++|||++||+|||++
T Consensus 729 Lf~vriAQGL~hlGKGtltl~p~~~dr~ll~p~alagl~t~~~~~LD~~i~l~~~~H~~ly~Lv~amqprm~~ 801 (878)
T KOG2005|consen 729 LFVVRIAQGLVHLGKGTLTLSPFHSDRQLLMPTALAGLLTTVFALLDANIILLVKSHYLLYFLVLAMQPRMLV 801 (878)
T ss_pred HHHHHHHHHHHHhcCCceecccccchhhhhchHHHHHHHHHHHHHhccchhccchHHHHHHHHHHhhCceEEE
Confidence 9999999999999999999999999999999999999999999999999666668999999999999999985
No 2
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-175 Score=1412.16 Aligned_cols=776 Identities=39% Similarity=0.660 Sum_probs=743.5
Q ss_pred CCCCCCCCCCCCCccccCCCHHHHHhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHH
Q 003521 19 VKVPAKDPKKKDDKKDEDLSEEDLALKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTL 98 (813)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~lseed~~lk~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l 98 (813)
|.+...++|.|+++++|.|||||.++|.+||++|+|++|+|++|+..+|.+|++.||+||||||.||||||||||||..+
T Consensus 20 ~e~~~~n~~~k~kee~e~lseed~~lk~dLellVeriqd~d~~l~~~sLn~LkeviksStSsmtavpkplkfLrp~y~dl 99 (881)
T COG5110 20 PEKQTPNKKDKKKEEEEQLSEEDAMLKGDLELLVERIQDPDIDLQNNSLNMLKEVIKSSTSSMTAVPKPLKFLRPNYLDL 99 (881)
T ss_pred cccCCCCccchhhhhHhhhchhhhhhcccHHHHHHHhhCCChHHHHHHHHHHHHHHhccccccccCCchhhhcCCCcchH
Confidence 43333344444455568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHHhhccccccccchhhhhcCCCCCCCCcccHHHHHHHHHHHHHHHHhccCccC-HHHH
Q 003521 99 KAYYETMPDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEAS-IDDL 177 (813)
Q Consensus 99 ~~~ye~~~~~~~k~~~AdilS~l~~t~~~~~~~~~L~y~L~~~~~d~~~wgheYvr~l~~~i~~~y~~~~~~~~~-~~~L 177 (813)
.++|++|+.+..|.++|||+|+++|+|+..+++++|+|||+|+..|+..|||||||||++||.++|+.+.+.+.+ .+++
T Consensus 100 ~~iydkw~~~n~K~~LaDilS~l~m~yse~~kh~sL~YRl~g~i~D~~~WGHeYvrhLa~eI~ev~n~~~e~daps~~dt 179 (881)
T COG5110 100 LEIYDKWLEGNKKRWLADILSALCMVYSENGKHKSLAYRLEGNIIDLKEWGHEYVRHLAGEIAEVKNDQNEMDAPSFADT 179 (881)
T ss_pred HHHHhhccCcchhhHHHHHHHHHeeecccccchhhHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhcchhhccCCchhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999888766 5899
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhcCChhhhHHHhhccChHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHccCCHHH
Q 003521 178 MELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPN 257 (813)
Q Consensus 178 ~~lv~~iv~~~l~~n~e~eAvdlalE~~~ld~i~~~vd~~~~~rv~~Yl~~~~~~~~~p~~~~vl~~~~~iy~~~~~~~~ 257 (813)
.++-..||||+++||+|.+|||+++|++.||++.+|||.+||.|||+|+.+|++.+|+|++..++++++.||+|++++++
T Consensus 180 ~~l~l~ivpfflkHNaE~dAiDlL~Evg~Iekv~~fVd~~n~~RvclYl~~cv~llp~pedVa~l~ta~~IYlk~~~lt~ 259 (881)
T COG5110 180 RDLGLEIVPFFLKHNAEFDAIDLLVEVGGIEKVLDFVDTHNYNRVCLYLEDCVPLLPPPEDVALLETALKIYLKMGDLTR 259 (881)
T ss_pred HHHHHHHhHHHHhcccchHHHHHHHHhcchhhhhhhhcccchhHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHhcchHHHHHHHHHHHHhhcccccccCCCCCCcchHHHHHHHHcccCcchhHHHHHHHhhcc
Q 003521 258 ALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVM 337 (813)
Q Consensus 258 al~~al~l~d~~~i~~i~~~~~d~~~~~Qlaf~larq~~~~~~~~~~~~~~~~~~~l~~il~n~~l~~~~~~~~~~l~i~ 337 (813)
|+..|||+++.+.+++.+.+.+||.++||++|+||||++.++..+ ++++.||+|.+++++|++++|++|++
T Consensus 260 av~~aiRl~~~~~i~e~~~a~~Dp~~kKQ~~YiLArq~~~~e~~d---------ee~~dil~Ng~lsdhf~ylgkELnl~ 330 (881)
T COG5110 260 AVVGAIRLQKSKEIIEYVRAIEDPDYKKQCLYILARQNLYYEASD---------EEEKDILSNGYLSDHFRYLGKELNLD 330 (881)
T ss_pred HHHHHHhcccHHHHHHHHHhccChHHHHHHHHHHHhccCCcccCC---------HHHHHHhcCCcHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999998644 68999999999999999999999999
Q ss_pred CCCChHHHHHhhhccCCCCc-CcchhHHHHhHHHHHHHHHHhcccCCccccccCCCCCCCCCCCccccccchhhHHHHHH
Q 003521 338 EPKSPEDIYKAHLLDGRASA-GASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAA 416 (813)
Q Consensus 338 ~~k~~e~iyK~~l~~~r~~~-~~~~dsa~~~la~~~~na~vnaG~~~D~~l~~~~~~~~~~~~~~wl~k~~~~~k~sA~a 416 (813)
+||.||+|||+|++..|.+. +++++||.||+|.+|+|+++|+|+.+|+++-.+ ++|+||++..++.+|++
T Consensus 331 ~PkvpedI~K~hl~~~k~~~~~agi~sA~qnla~~fvn~~inlgy~nD~li~~d---------d~wiyk~k~~gliSa~a 401 (881)
T COG5110 331 KPKVPEDILKGHLKYDKDTRQLAGIGSANQNLAMGFVNDPINLGYENDSLIPLD---------DEWIYKCKVPGLISAFA 401 (881)
T ss_pred CCCChHHHHHhhhhccccchhhcccchhhhHHHHhhhccccccCccCCeeeecc---------hhhhhcCCCCChhheee
Confidence 99999999999998666543 578999999999999999999999999998654 45999999999999999
Q ss_pred HhhhhcccccchhHHhHhhhhcCCChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccC
Q 003521 417 SLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGT 496 (813)
Q Consensus 417 slGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs 496 (813)
|+|+|..||.|.|++.|++|+|++.++.|+||++|+|+.+.++++|.+|++++|++||.+++...+.+|++|||++|.|+
T Consensus 402 SIG~i~~WN~d~gl~~Ldkyly~de~~~KaGaLLGig~s~~~v~~E~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt 481 (881)
T COG5110 402 SIGVIESWNSDKGLETLDKYLYADESYRKAGALLGIGLSGLRVFEERPPALALLSNYLQSSSSKHVIAAILGLGAAFSGT 481 (881)
T ss_pred cchhhhhhhhHhhHHHHHHHHhcCcccccccceeeeeecccccccccchHHHHHHHhccCCchHHHHHHHhhhHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhccCCCCchhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCccccCchhHHHHHHHHHHhhcCChhh
Q 003521 497 QNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQES 576 (813)
Q Consensus 497 ~~e~i~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~lG~~e~ 576 (813)
+++++.++|.|++.+++.++|++++|+++||.||+||||+++...|+|+++|+...+.+..|.||+++|+|++|+||+++
T Consensus 482 ~~eevl~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD~ts~ilqtf~Er~~~e~~tqw~RFlaLgLa~Lf~g~~d~ 561 (881)
T COG5110 482 QAEEVLELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDLTSLILQTFVERGKIESETQWFRFLALGLASLFYGRKDQ 561 (881)
T ss_pred cHHHHHHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHccccch
Confidence 99999999999999888899999999999999999999999999999999998776667889999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhcccCCCC-----cchhhHHHHHHHHhhccchhhHHH
Q 003521 577 VEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKG-----EAYQGPAVLGIAMVAMAEELGLEM 651 (813)
Q Consensus 577 ~~~~i~~L~~~~~p~~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~-----~~vrr~AvlglalI~~~~~~g~e~ 651 (813)
+|.+.+.+.++++|+.|+..+++-+|+|+||||+..||.|||+|.+...|+ ..++..|++|+|+|+||+++|+||
T Consensus 562 ~d~v~eti~aIeg~ls~~~eiLv~~c~Y~GTGdvl~Iq~lLhv~~e~~~D~~k~~ea~ie~~a~Lg~AliamGedig~eM 641 (881)
T COG5110 562 VDDVEETIMAIEGALSKHEEILVKGCQYVGTGDVLVIQSLLHVKDEFTGDTLKNEEALIESLALLGCALIAMGEDIGSEM 641 (881)
T ss_pred hHHHHHHHHHhcchhhhhHHHHHhhceecccCcHHHHHHHHhccCCCCcccchhhHHHHHHHHHhhhHHhhhcchhhHHH
Confidence 999999999999999999999999999999999999999999998766652 247889999999999999999999
Q ss_pred HHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchhHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHHhh
Q 003521 652 AIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSS 731 (813)
Q Consensus 652 ~~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~Lr~l~~ 731 (813)
+.|+|+|++||+++|||+.+|+|+|+++++||+++++|+|++++||.|..|..++|+|||+|||||+|+|++++|||++|
T Consensus 642 vlRhf~h~mhyg~~hiR~~~PLa~gils~SnPQm~vfDtL~r~shd~dl~v~~ntIfamGLiGAGT~NaRlaqlLrQlaS 721 (881)
T COG5110 642 VLRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQMNVFDTLERSSHDGDLNVIINTIFAMGLIGAGTLNARLAQLLRQLAS 721 (881)
T ss_pred HHHHhhhHhhcCcHHHHHHHHHHHhcccCCCcchHHHHHHHHhccccchhHHHHHHHHhhccccCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccChhhHHHHHHHHhhhhcCCCcccccccCCCCCCCChHHHHHHHHHHhhhcccccccccchhHHHHHHhhhhccccc
Q 003521 732 YYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQNVTD 811 (813)
Q Consensus 732 ~~~~d~~~~f~~~lAqGll~~G~g~~tlsp~~sd~~~~~~~a~~gL~~~l~~~ld~~~~i~~~~~~l~~~l~~a~~Pr~l 811 (813)
||+|+.+++|.+||||||+++|||++|++|+|.|+..+.|++.+||+++.+.++|+..|.+..+|+++|||.++++||++
T Consensus 722 YY~kes~aLfv~riAQGLl~LGKGtmti~p~~~d~~~l~~~~~agl~ttv~~lld~~~f~L~ssH~l~y~l~~~irp~~~ 801 (881)
T COG5110 722 YYYKESKALFVLRIAQGLLSLGKGTMTISPLYFDKTTLMPKNTAGLFTTVFMLLDSSIFPLVSSHALMYFLLCQIRPQKY 801 (881)
T ss_pred HHhhccchhhHHHHHHHHHHhcCCceeeccccccchhhcchhHHHHHHHHHHHHccccchhhhhHHHHHHHHhccCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999987
Q ss_pred C
Q 003521 812 C 812 (813)
Q Consensus 812 ~ 812 (813)
+
T Consensus 802 v 802 (881)
T COG5110 802 V 802 (881)
T ss_pred E
Confidence 5
No 3
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-134 Score=1128.45 Aligned_cols=704 Identities=22% Similarity=0.327 Sum_probs=656.5
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHhcCCCcchHHHHHHHHHHHHhhccc
Q 003521 48 LELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTMSA 127 (813)
Q Consensus 48 l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye~~~~~~~k~~~AdilS~l~~t~~~ 127 (813)
.-.++++|+|+.++|+.+||..++++|+.+ |.++.+.++.||.+|||.+|+ .|+++|.++|+|| |++
T Consensus 6 Aa~lialL~e~~~~lk~~Al~~in~vVd~~----------WpEIsd~l~~IE~lyed~~F~-er~~AaL~~SKVy--y~L 72 (929)
T KOG2062|consen 6 AAGLIALLREPEPSLKVHALFKINNVVDQF----------WPEISDSLPKIESLYEDETFP-ERQLAALLASKVY--YYL 72 (929)
T ss_pred hHHHHHHHhCCchHHHHHHHHHHHHHHHHh----------hHHhhhhHHHHHHHhccCCCc-hhHHHHHHHHHHH--HHH
Confidence 456889999999999999999999999999 556666677999999999999 5999999999999 999
Q ss_pred cccccchhhhhcCC-CCCCCCcccHHHHHHHHHHHHHHHHhccCc-------cCH-HHHHHHHHHHHHHHhcCCCHHHHH
Q 003521 128 EGERESLKYRLLGS-EGDIGSWGHEYVRNLAGEIAQEYAKRQTDE-------ASI-DDLMELVQEIVAFHMKHNAEPEAV 198 (813)
Q Consensus 128 ~~~~~~L~y~L~~~-~~d~~~wgheYvr~l~~~i~~~y~~~~~~~-------~~~-~~L~~lv~~iv~~~l~~n~e~eAv 198 (813)
++|+++|.|+|.|+ .||+.+ +++|+.+++++|+|.|++.+.+. ..+ ++|+.+|++|+..|+..|++.+|+
T Consensus 73 geye~Al~yAL~ag~~F~Vd~-~S~y~etivak~id~yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~ai 151 (929)
T KOG2062|consen 73 GEYEDALEYALRAGDDFDVDE-NSDYVETIVAKCIDMYIETASETYKNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAI 151 (929)
T ss_pred HHHHHHHHHHHcCCccccccC-ccchhhHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 99999999999995 899999 59999999999999999876432 123 799999999999999999999999
Q ss_pred HHHHhcCChhhhHH-HhhccChHHHHHHHHhhcccCCCCCcH--HHHHHHHHHHHccC--CHHHHHHHHHhCCChHHHHH
Q 003521 199 DLLMEVEDLDLLVE-HVDATNFKRTCLYLTSAAKYLPGPDDM--LVLDIAYMIYLKFE--EFPNALQIALFLDNMQYVKQ 273 (813)
Q Consensus 199 dlalE~~~ld~i~~-~vd~~~~~rv~~Yl~~~~~~~~~p~~~--~vl~~~~~iy~~~~--~~~~al~~al~l~d~~~i~~ 273 (813)
+|++|++|+|+|++ .++.++....|.|++..+..++..+.+ ++++++++.|++.+ +|+..|+|.+.++|++.+.+
T Consensus 152 Gia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ 231 (929)
T KOG2062|consen 152 GIAFETRRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVAD 231 (929)
T ss_pred hHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHH
Confidence 99999999999999 567788889999999999999888887 79999999999975 79999999999999999999
Q ss_pred HHHhc---chHHHHHHHHHHH---Hhhcccccc----cCCCCCCcchHHHHHHHHcccCcchhHHHHHHHhhccCCCChH
Q 003521 274 IFTSC---DDLLRKKQFCYIL---ARHGITLEL----DDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPE 343 (813)
Q Consensus 274 i~~~~---~d~~~~~Qlaf~l---arq~~~~~~----~~~~~~~~~~~~~l~~il~n~~l~~~~~~~~~~l~i~~~k~~e 343 (813)
+|+++ +|.+++||+||+| +.|+|+..+ ...+..++..-+++..||||+...+++++|.-++|.+|.++++
T Consensus 232 ll~kL~~e~~~llayQIAFDL~esasQefL~~v~~~l~~d~~~de~p~~kii~ILSGe~tik~~l~FL~~~N~tD~~iL~ 311 (929)
T KOG2062|consen 232 LLEKLVKEDDLLLAYQIAFDLYESASQEFLDSVLDRLPADDARDEKPMEKIISILSGEETIKLYLQFLLRHNNTDLLILE 311 (929)
T ss_pred HHHHHHhcchhhhHHHHHHHHhhccCHHHHHHHHHHcccccccccChHHHHHHHhcCchHHHHHHHHHHHcCCchHHHHH
Confidence 99998 4589999999999 467776544 2112234455688999999999999999999999999999999
Q ss_pred HHHHhhhccCCCCcCcchhHHHHhHHHHHHHHHHhcccCCccccccCCCCCCCCCCCccccccchhhHHHHHHHhhhhcc
Q 003521 344 DIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILL 423 (813)
Q Consensus 344 ~iyK~~l~~~r~~~~~~~dsa~~~la~~~~na~vnaG~~~D~~l~~~~~~~~~~~~~~wl~k~~~~~k~sA~aslGlI~~ 423 (813)
.| |..+ |+ +.+|.|.+++|||||+||++|.|+|+|++ |+.|++||+||+|+||||+||+
T Consensus 312 ~i-K~s~---r~--------sv~H~A~~iAN~fMh~GTT~D~FlR~NL~---------WlskAtNWaKFtAtAsLGvIH~ 370 (929)
T KOG2062|consen 312 EI-KESV---RN--------SVCHTATLIANAFMHAGTTSDTFLRNNLD---------WLSKATNWAKFTATASLGVIHR 370 (929)
T ss_pred HH-HHHH---HH--------hhhhHHHHHHHHHHhcCCcchHHHHhchh---------HHhhcchHhhhhhhhhcceeec
Confidence 99 7654 43 66799999999999999999999999998 9999999999999999999999
Q ss_pred cccchhHHhHhhhhcC----CChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCC
Q 003521 424 WDVDSGLAQIDKYFHS----TDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRE-DACIRIGAIMGLGISYAGTQN 498 (813)
Q Consensus 424 ~~~~~~l~~l~~yL~s----~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~-~~~v~~gA~lGLGl~y~Gs~~ 498 (813)
||..+|++++.+|||+ ++.|.++||++|+|+||+|+..+ +..+|.++|.+. ++++|||+|||||++.+||.|
T Consensus 371 G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~---~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~ 447 (929)
T KOG2062|consen 371 GHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG---ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSAN 447 (929)
T ss_pred cccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc---HHHHHHHHHHhccchhhhhhhhhhccchhccccc
Confidence 9999999999999997 68999999999999999999877 899999999764 689999999999999999999
Q ss_pred HHHHHHHHHhcc-CCCCchhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCccccCchhHHHHHHHHHHhhcCChhhH
Q 003521 499 DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESV 577 (813)
Q Consensus 499 e~i~e~L~~~L~-d~~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~lG~~e~~ 577 (813)
+++++.|+.+++ |+++++| +|++||||+++||.+.+++++|+++ +++|| ||++.|++++|++|+.|||++.+
T Consensus 448 ~eiYe~lKevLy~D~AvsGE---AAgi~MGl~mlGt~~~eaiedm~~Y---a~ETQ-Heki~RGl~vGiaL~~ygrqe~A 520 (929)
T KOG2062|consen 448 EEIYEKLKEVLYNDSAVSGE---AAGIAMGLLMLGTANQEAIEDMLTY---AQETQ-HEKIIRGLAVGIALVVYGRQEDA 520 (929)
T ss_pred HHHHHHHHHHHhccchhhhh---HHHHhhhhHhhCcCcHHHHHHHHHH---hhhhh-HHHHHHHHHHhHHHHHhhhhhhh
Confidence 999999999997 8889999 7999999999999999999999998 67899 99999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhcccCCCCcchhhHHHHHHHHhhccchhhHHHHHHHHH
Q 003521 578 EATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLE 657 (813)
Q Consensus 578 ~~~i~~L~~~~~p~~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e~~~~~l~ 657 (813)
+.+|+.+..++||+.|+++++++++||+||||+.+|++|||++++|++| ||||+||+|||||++++| ++++++++
T Consensus 521 d~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nD--DVrRaAVialGFVl~~dp---~~~~s~V~ 595 (929)
T KOG2062|consen 521 DPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVND--DVRRAAVIALGFVLFRDP---EQLPSTVS 595 (929)
T ss_pred HHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccch--HHHHHHHHHheeeEecCh---hhchHHHH
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999 99999999
Q ss_pred HHhhcCChhHHhHHHHHHhhhccCCCchhHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCC---chHHHHHHHHHhhhh-
Q 003521 658 HLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN---NARIAGMLRNLSSYY- 733 (813)
Q Consensus 658 ~L~~~~~~~VR~g~~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~---n~rv~~~Lr~l~~~~- 733 (813)
.|++++|||||||+++|||++|||||++++|++|+|+++|++++|||+|+||++||++|++ +|++..+++++.+.+
T Consensus 596 lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~ 675 (929)
T KOG2062|consen 596 LLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVIN 675 (929)
T ss_pred HHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999988 599999999999886
Q ss_pred --ccChhhHHHHHHHHhhhhcCCCcccccccCCCCCCCChHHHHHHHHHHhhhcccccccccchhH-HHHHHhhhhcccc
Q 003521 734 --YKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHY-VLYFLVLAMQNVT 810 (813)
Q Consensus 734 --~~d~~~~f~~~lAqGll~~G~g~~tlsp~~sd~~~~~~~a~~gL~~~l~~~ld~~~~i~~~~~~-l~~~l~~a~~Pr~ 810 (813)
|+|.+++||+++||||+++||+|+|++.. +++++.+..|++|+++|+|. |||| |.||++||+.|++
T Consensus 676 dKhEd~~aK~GAilAqGildaGGrNvtislq-s~tg~~~~~~vvGl~~Flq~----------WyWfPL~~flSLaf~PT~ 744 (929)
T KOG2062|consen 676 DKHEDGMAKFGAILAQGILDAGGRNVTISLQ-SMTGHTKLDAVVGLVVFLQY----------WYWFPLIHFLSLAFTPTT 744 (929)
T ss_pred hhhhHHHHHHHHHHHhhhhhcCCceEEEEEe-ccCCCCchHHHHHHHHHHHH----------HHHHHHHHHHHHhcCcce
Confidence 78899999999999999999999999998 89999999999999999998 9988 9999999999998
Q ss_pred cC
Q 003521 811 DC 812 (813)
Q Consensus 811 l~ 812 (813)
+.
T Consensus 745 vi 746 (929)
T KOG2062|consen 745 VI 746 (929)
T ss_pred EE
Confidence 63
No 4
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-111 Score=920.59 Aligned_cols=703 Identities=21% Similarity=0.278 Sum_probs=637.9
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHhcCCCcchHHHHHHHHHHHHhhcccc
Q 003521 49 ELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTMSAE 128 (813)
Q Consensus 49 ~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye~~~~~~~k~~~AdilS~l~~t~~~~ 128 (813)
..+.+.|.|-..+++.+||+.++..|++. |.++.+-++.||.+|+|.+|++ |+++|.++|++| |.++
T Consensus 7 ~~L~all~e~~d~~~~~Al~~In~~vDql----------wpeIsddl~~Ie~lydd~sf~~-remaaL~~SKvY--y~Lg 73 (926)
T COG5116 7 RILPALLAELRDGRESEALDVINAHVDQL----------WPEISDDLRYIEALYDDDSFDP-REMAALCLSKVY--YVLG 73 (926)
T ss_pred hhHHHHHHHHhhhhHHHHHHHHHHHHHHh----------hhhhhchhhHHHHhhccCCCCH-HHHHHHHHHHHH--HHHH
Confidence 34667777778889999999999999999 6678888889999999999985 999999999998 9999
Q ss_pred ccccchhhhhcCCC-CCCCCcccHHHHHHHHHHHHHHHHhccC-----ccC-H-HHHHHHHHHHHHHHhcCCCHHHHHHH
Q 003521 129 GERESLKYRLLGSE-GDIGSWGHEYVRNLAGEIAQEYAKRQTD-----EAS-I-DDLMELVQEIVAFHMKHNAEPEAVDL 200 (813)
Q Consensus 129 ~~~~~L~y~L~~~~-~d~~~wgheYvr~l~~~i~~~y~~~~~~-----~~~-~-~~L~~lv~~iv~~~l~~n~e~eAvdl 200 (813)
+|+++++|+|.++. |++.+ |+.|+++++.+|++-|.....+ +.+ + +.|..+++.|+..|++.++..-+++|
T Consensus 74 eY~~Ai~yAL~agdrfl~D~-~S~y~etiv~k~iem~vh~~~~~y~~~~~d~iD~~l~~v~e~i~~kc~~~se~~~~lgI 152 (926)
T COG5116 74 EYQQAIEYALRAGDRFLVDD-GSFYYETIVYKSIEMYVHMMDSAYIGGDKDIIDRILDFVLEVIGAKCVDDSEIGYLLGI 152 (926)
T ss_pred hHHHHHHHHHhcCCceeecC-CccceehhHHhHHHHHHHHHHHhhhCCCcccchHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999954 88887 7999999999999999876532 222 3 67899999999999999999999999
Q ss_pred HHhcCChhhhHHHhhccChHHHHHHHHhhcccCCCCCcH--HHHHHHHHHHHcc--CCHHHHHHHHHhCCChHHHHHHHH
Q 003521 201 LMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDM--LVLDIAYMIYLKF--EEFPNALQIALFLDNMQYVKQIFT 276 (813)
Q Consensus 201 alE~~~ld~i~~~vd~~~~~rv~~Yl~~~~~~~~~p~~~--~vl~~~~~iy~~~--~~~~~al~~al~l~d~~~i~~i~~ 276 (813)
++|.-|+|.|+.++...+..++..|++..+..++....+ ++|+.+.+++... ++|+-...|.+.|||.+.++++|+
T Consensus 153 a~eg~rldiie~~l~~~~d~di~~ylL~Lait~v~~~~fr~~ilr~l~~~~~~~~~pdyf~v~k~vv~LnDa~~a~~L~~ 232 (926)
T COG5116 153 AAEGLRLDIIEKYLSDGNDCDIINYLLDLAITLVEEEGFRKEILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKALIE 232 (926)
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEeEEEEEeccHHHHHHHHH
Confidence 999999999999999999999999999999998888877 6999999998876 368888899999999999999999
Q ss_pred hc---chHHHHHHHHHHH---HhhcccccccCCCCCCcchHHHHHHHHcccCcchhHHHHHHHhhccCCCChHHHHHhhh
Q 003521 277 SC---DDLLRKKQFCYIL---ARHGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHL 350 (813)
Q Consensus 277 ~~---~d~~~~~Qlaf~l---arq~~~~~~~~~~~~~~~~~~~l~~il~n~~l~~~~~~~~~~l~i~~~k~~e~iyK~~l 350 (813)
++ +|...--|+||++ +.|+++.-+...-.+ ...++.+..||||++..+++..|.-++|.+|.+.++.- |+.+
T Consensus 233 kL~~end~~l~aqvAFdledsasqe~leil~t~~vA-~~~d~av~~ILSGe~t~ky~~~FLl~~nntd~~~Ln~s-k~sl 310 (926)
T COG5116 233 KLVKENDLLLYAQVAFDLEDSASQEILEILVTELVA-QGYDQAVMSILSGEFTKKYLGAFLLEKNNTDFKFLNSS-KSSL 310 (926)
T ss_pred HHHhhhhhhhhhhheehhccccCHHHHHhccchhhh-ccccHHHHHHhcCcchhHHHHHHHHhcCCcceeehhcc-hhhh
Confidence 97 3444555999998 567776322111001 01246799999999999999999999999999999887 7777
Q ss_pred ccCCCCcCcchhHHHHhHHHHHHHHHHhcccCCccccccCCCCCCCCCCCccccccchhhHHHHHHHhhhhcccccchhH
Q 003521 351 LDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDSGL 430 (813)
Q Consensus 351 ~~~r~~~~~~~dsa~~~la~~~~na~vnaG~~~D~~l~~~~~~~~~~~~~~wl~k~~~~~k~sA~aslGlI~~~~~~~~l 430 (813)
+ .|. ++.|.|.+|+|+|||.||++|.|+++|++ |+.|+.+|+||+|+||+|+||+|+..+|.
T Consensus 311 ~-~k~--------s~fH~avs~AN~fMn~GTs~dsf~r~Nl~---------wlgka~nWaKFtatAslGvIH~gn~n~~~ 372 (926)
T COG5116 311 A-RKF--------SRFHYAVSLANSFMNLGTSNDSFYRNNLD---------WLGKASNWAKFTATASLGVIHLGNSNPGY 372 (926)
T ss_pred h-hhh--------hhhhhHHHHHHHHhhcCCCcchHhhcCch---------hhhhcchHhhhhhhhhceeEeeccCCchh
Confidence 7 333 67899999999999999999999999998 99999999999999999999999999999
Q ss_pred HhHhhhhcCC---ChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcCC-C---HHHHHHHHHHHHHHhccCCCHHHHH
Q 003521 431 AQIDKYFHST---DNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRE-D---ACIRIGAIMGLGISYAGTQNDQIRH 503 (813)
Q Consensus 431 ~~l~~yL~s~---~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~-~---~~v~~gA~lGLGl~y~Gs~~e~i~e 503 (813)
+++.+|||++ +.++++||++|+|+|++|+..+ ..++|.+++.++ + +.+.+|++||+|++.+||.|+++++
T Consensus 373 ~il~pYLP~e~ass~~~eGGalyalGLI~Agfgr~---~TeYL~e~~~~teDe~~~~l~yG~~LGiGL~~MgSan~eiye 449 (926)
T COG5116 373 EILKPYLPSEVASSRQKEGGALYALGLIKAGFGRE---DTEYLLEYFLDTEDELTPELAYGVCLGIGLINMGSANREIYE 449 (926)
T ss_pred HhhhccCCcccchhhhccCceeeeehhhccCcCcc---cHHHHHHHhCcccccccHHHHHHHHhhhcchhcccccHHHHH
Confidence 9999999964 5599999999999999998777 688899887553 3 4899999999999999999999999
Q ss_pred HHHHhcc-CCCCchhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCccccCchhHHHHHHHHHHhhcCChhhHHHHHH
Q 003521 504 KLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAE 582 (813)
Q Consensus 504 ~L~~~L~-d~~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~lG~~e~~~~~i~ 582 (813)
.|+.++. |.++.+| +|+++|||+++||++.+++++|.++ +++|| |+++.|++++|++|+.+|||+.++.+|.
T Consensus 450 ~lKe~l~nD~a~~ge---Aa~~gMGl~mLgt~s~eai~dm~ty---a~ETq-he~i~Rglgig~aLi~ygrqe~add~I~ 522 (926)
T COG5116 450 KLKELLKNDRALLGE---AAVYGMGLLMLGTWSVEAIEDMRTY---AGETQ-HERIKRGLGIGFALILYGRQEMADDYIN 522 (926)
T ss_pred HHHHHHhcchhhhhh---hhhhccceeeecCCCHHHHHHHHHH---hcchh-hhhHHhhhhhhhhHhhhhhHHHHHHHHH
Confidence 9999997 7777788 7999999999999999999999998 78899 9999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhcccCCCCcchhhHHHHHHHHhhccchhhHHHHHHHHHHHhhc
Q 003521 583 VSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQY 662 (813)
Q Consensus 583 ~L~~~~~p~~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e~~~~~l~~L~~~ 662 (813)
.|..+.+|+.||++++++++||+||||..+|+.||||+++|.+| +|||+||++||||++.++ ..++++++.|+.+
T Consensus 523 ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~avsD~nD--DVrRAAViAlGfvc~~D~---~~lv~tvelLs~s 597 (926)
T COG5116 523 ELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHYAVSDGND--DVRRAAVIALGFVCCDDR---DLLVGTVELLSES 597 (926)
T ss_pred HHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhheeecccCch--HHHHHHHHheeeeEecCc---chhhHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999 999999999999999999 9999999999999
Q ss_pred CChhHHhHHHHHHhhhccCCCchhHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCC---chHHHHHHHHHhhhh---ccC
Q 003521 663 GEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN---NARIAGMLRNLSSYY---YKD 736 (813)
Q Consensus 663 ~~~~VR~g~~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~---n~rv~~~Lr~l~~~~---~~d 736 (813)
+|+|||+|+++|||++|+|+|...++|.|++++.|++++|||+|+||+|||.+|+| ||++..+.+.+.+.+ |++
T Consensus 598 hN~hVR~g~AvaLGiacag~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 598 HNFHVRAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHES 677 (926)
T ss_pred cchhhhhhhHHHhhhhhcCCccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhHh
Confidence 99999999999999999999999999999999999999999999999999999999 688888888877765 677
Q ss_pred hhhHHHHHHHHhhhhcCCCcccccccCCCCCCCChHHHHHHHHHHhhhcccccccccchhH-HHHHHhhhhccccc
Q 003521 737 ANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHY-VLYFLVLAMQNVTD 811 (813)
Q Consensus 737 ~~~~f~~~lAqGll~~G~g~~tlsp~~sd~~~~~~~a~~gL~~~l~~~ld~~~~i~~~~~~-l~~~l~~a~~Pr~l 811 (813)
..+++|+.+||||.++||+|+||+.. +-+|.++-.+++||.+|+|. |||| |.||+++++.|+-+
T Consensus 678 glaklGA~laqGi~~aGGRNvti~l~-natG~l~~~~ivGlv~Flqy----------WYWfPL~hf~SLsf~Pttv 742 (926)
T COG5116 678 GLAKLGAVLAQGISEAGGRNVTISLR-NATGILSADRIVGLVLFLQY----------WYWFPLIHFVSLSFLPTTV 742 (926)
T ss_pred HHHHHHHHHHhhhhhcCCceEEEEEe-cccCcccHHHHHHHHHHHHH----------HHHHHHHHHHhhhcCccee
Confidence 88999999999999999999999987 55899999999999999998 9988 99999999999753
No 5
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-55 Score=491.09 Aligned_cols=570 Identities=19% Similarity=0.249 Sum_probs=441.5
Q ss_pred HHHHHHHHHhhccccccccchhhhhcCCCCCCCCcccHHHHHHHHHHHHHHHHhcc--Cc--cCHHHHHHHHHHHHHHHh
Q 003521 114 MADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQT--DE--ASIDDLMELVQEIVAFHM 189 (813)
Q Consensus 114 ~AdilS~l~~t~~~~~~~~~L~y~L~~~~~d~~~wgheYvr~l~~~i~~~y~~~~~--~~--~~~~~L~~lv~~iv~~~l 189 (813)
+|-++++|- +..++-..|+|. ..| ..|..+.-||.+.--.... ++ .+-.++.+|+.+.|+||+
T Consensus 6 Aa~lialL~-----e~~~~lk~~Al~------~in--~vVd~~WpEIsd~l~~IE~lyed~~F~er~~AaL~~SKVyy~L 72 (929)
T KOG2062|consen 6 AAGLIALLR-----EPEPSLKVHALF------KIN--NVVDQFWPEISDSLPKIESLYEDETFPERQLAALLASKVYYYL 72 (929)
T ss_pred hHHHHHHHh-----CCchHHHHHHHH------HHH--HHHHHhhHHhhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHH
Confidence 455555552 223344445555 333 5566666777665332211 12 234679999999999999
Q ss_pred cCCCHHHHHHHHHhcCChhhh---HHHhhccChHHHHHHHHhhcccCCCCC-----cH---HHHHHHHHHHHccCCHHHH
Q 003521 190 KHNAEPEAVDLLMEVEDLDLL---VEHVDATNFKRTCLYLTSAAKYLPGPD-----DM---LVLDIAYMIYLKFEEFPNA 258 (813)
Q Consensus 190 ~~n~e~eAvdlalE~~~ld~i---~~~vd~~~~~rv~~Yl~~~~~~~~~p~-----~~---~vl~~~~~iy~~~~~~~~a 258 (813)
++|.+|+.+||.++....+ .+|+....++.|-.|+..++..+-.|+ |. .|.+.++..+...++|.++
T Consensus 73 --geye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~a 150 (929)
T KOG2062|consen 73 --GEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQA 150 (929)
T ss_pred --HHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhhhhHHHHH
Confidence 9999999999999854433 345555556777788888887665554 43 5778888888888899999
Q ss_pred HHHHHhCCChHHHHH-HHHhcchH-HHHHH--HHHHH-----Hhhcccc-------cccCCC----------CCCcchHH
Q 003521 259 LQIALFLDNMQYVKQ-IFTSCDDL-LRKKQ--FCYIL-----ARHGITL-------ELDDDM----------VPDDDDRY 312 (813)
Q Consensus 259 l~~al~l~d~~~i~~-i~~~~~d~-~~~~Q--laf~l-----arq~~~~-------~~~~~~----------~~~~~~~~ 312 (813)
++++++..+.+.+++ ++++-.+. ...|- ++.-+ .|.+++. ..+..+ -+|.+-..
T Consensus 151 iGia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va 230 (929)
T KOG2062|consen 151 IGIAFETRRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVA 230 (929)
T ss_pred HhHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHH
Confidence 999999999999998 55442211 11111 11111 1222211 111000 00000000
Q ss_pred H-------------------------HHHHHcccC------cchhHHHHHHHhhccCCCChHHHHHhhhccCCCCcCcch
Q 003521 313 A-------------------------LQDIVNNVK------LSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASV 361 (813)
Q Consensus 313 ~-------------------------l~~il~n~~------l~~~~~~~~~~l~i~~~k~~e~iyK~~l~~~r~~~~~~~ 361 (813)
+ -|++|.... -...+....+-.+|+.+....++|..||-+++++|...+
T Consensus 231 ~ll~kL~~e~~~llayQIAFDL~esasQefL~~v~~~l~~d~~~de~p~~kii~ILSGe~tik~~l~FL~~~N~tD~~iL 310 (929)
T KOG2062|consen 231 DLLEKLVKEDDLLLAYQIAFDLYESASQEFLDSVLDRLPADDARDEKPMEKIISILSGEETIKLYLQFLLRHNNTDLLIL 310 (929)
T ss_pred HHHHHHHhcchhhhHHHHHHHHhhccCHHHHHHHHHHcccccccccChHHHHHHHhcCchHHHHHHHHHHHcCCchHHHH
Confidence 0 011111111 011222345668889999999999999998888888888
Q ss_pred hHHHHhHHHHHHHHHHhccc-CCccccccCCCCCCCCCCCccccccchhhHHHHHHHhhhhcccccchhHHhHhhhhcCC
Q 003521 362 DSARQNLAATFVNAFVNAGF-GQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDSGLAQIDKYFHST 440 (813)
Q Consensus 362 dsa~~~la~~~~na~vnaG~-~~D~~l~~~~~~~~~~~~~~wl~k~~~~~k~sA~aslGlI~~~~~~~~l~~l~~yL~s~ 440 (813)
++.+.++ .|+..|..+ -...||... |++++|+..|-+| |...
T Consensus 311 ~~iK~s~----r~sv~H~A~~iAN~fMh~G------TT~D~FlR~NL~W---------------------------lskA 353 (929)
T KOG2062|consen 311 EEIKESV----RNSVCHTATLIANAFMHAG------TTSDTFLRNNLDW---------------------------LSKA 353 (929)
T ss_pred HHHHHHH----HHhhhhHHHHHHHHHHhcC------CcchHHHHhchhH---------------------------Hhhc
Confidence 8888665 677666665 488899764 6688999999999 5667
Q ss_pred ChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcC----CCHHHHHHHHHHHHHHhccCCCHHHHHHHHHhccCCCCch
Q 003521 441 DNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGR----EDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPL 516 (813)
Q Consensus 441 ~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~----~~~~v~~gA~lGLGl~y~Gs~~e~i~e~L~~~L~d~~~~~ 516 (813)
.+|.|+.|..+||+||.|+.++ ++++|.+||+. .+.+...||++||||+++|+++. +.++|+..|.+.+ +.
T Consensus 354 tNWaKFtAtAsLGvIH~G~~~~---~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~-~~~yL~~~Lk~~~-~e 428 (929)
T KOG2062|consen 354 TNWAKFTATASLGVIHRGHENQ---AMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG-ITDYLLQQLKTAE-NE 428 (929)
T ss_pred chHhhhhhhhhcceeeccccch---HHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc-HHHHHHHHHHhcc-ch
Confidence 8999999999999999999877 89999999987 46788999999999999999987 9999999997543 45
Q ss_pred hHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCccccCchhHHHHHHHHHHhhcCChhhHHHHHHHhhhhhhhhhhhhh
Q 003521 517 DVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCD 596 (813)
Q Consensus 517 e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~lG~~e~~~~~i~~L~~~~~p~~r~~~ 596 (813)
.+++++||||||+.|||.|.++++.+...|+.. ++ ....++++|+||+++
T Consensus 429 ~v~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D-~A----vsGEAAgi~MGl~ml------------------------- 478 (929)
T KOG2062|consen 429 VVRHGACLGLGLAGMGSANEEIYEKLKEVLYND-SA----VSGEAAGIAMGLLML------------------------- 478 (929)
T ss_pred hhhhhhhhhccchhcccccHHHHHHHHHHHhcc-ch----hhhhHHHHhhhhHhh-------------------------
Confidence 678999999999999999999999999998642 22 356778888888884
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhhhcccCCCCcchhhHHHHHHHHhhccchhhHHHHHHHHHHHhhcCChhHHhHHHHHHh
Q 003521 597 MTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALG 676 (813)
Q Consensus 597 ~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e~~~~~l~~L~~~~~~~VR~g~~lALG 676 (813)
||+|.+++.+|++|+.+++++ .+.|+..+||+|+.||.. |.+..++..|..+.||.+||+..+++|
T Consensus 479 ---------Gt~~~eaiedm~~Ya~ETQHe--ki~RGl~vGiaL~~ygrq---e~Ad~lI~el~~dkdpilR~~Gm~t~a 544 (929)
T KOG2062|consen 479 ---------GTANQEAIEDMLTYAQETQHE--KIIRGLAVGIALVVYGRQ---EDADPLIKELLRDKDPILRYGGMYTLA 544 (929)
T ss_pred ---------CcCcHHHHHHHHHHhhhhhHH--HHHHHHHHhHHHHHhhhh---hhhHHHHHHHhcCCchhhhhhhHHHHH
Confidence 899999999999999999998 999999999999999998 899999999999999999999999999
Q ss_pred hhccCCCchhHHHHHHHh-hcCCchHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHhhhhccChhhHHHHHHHHhhhhcC
Q 003521 677 LLCISNPKVNVMDTLSRL-SHDTDSEVAMAAVISLGLIGSGTNN--ARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMG 753 (813)
Q Consensus 677 L~~aGt~~~~aid~L~~l-~~D~d~~Vr~~AiiAlGlV~aGt~n--~rv~~~Lr~l~~~~~~d~~~~f~~~lAqGll~~G 753 (813)
++|+||||.++|..|.++ .+|++++||+.|++|+|||+..+++ |++.++|.. +.|||+|+|+.||+||.|+|
T Consensus 545 lAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLse-----s~N~HVRyGaA~ALGIaCAG 619 (929)
T KOG2062|consen 545 LAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSE-----SYNPHVRYGAAMALGIACAG 619 (929)
T ss_pred HHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChhhchHHHHHHhh-----hcChhhhhhHHHHHhhhhcC
Confidence 999999999999988877 7999999999999999999999886 788888887 67999999999999999999
Q ss_pred CCccc----ccccCCCC-CCCChHHHHHHHHHHhhhccccc
Q 003521 754 KGLLT----LNPYHSDR-FLLSPTALAGIVTTLFACLDMKA 789 (813)
Q Consensus 754 ~g~~t----lsp~~sd~-~~~~~~a~~gL~~~l~~~ld~~~ 789 (813)
+|+.. |+|+.+|. +||||+|+++++++++++.|--.
T Consensus 620 tG~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~ 660 (929)
T KOG2062|consen 620 TGLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLC 660 (929)
T ss_pred CCcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccC
Confidence 99994 99999997 99999999999999999766543
No 6
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-51 Score=445.40 Aligned_cols=548 Identities=20% Similarity=0.247 Sum_probs=436.2
Q ss_pred cHHHHHHHHHHHHHH--HHhccCc--cCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCC---hhhhHHHhhccChHHH
Q 003521 150 HEYVRNLAGEIAQEY--AKRQTDE--ASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVED---LDLLVEHVDATNFKRT 222 (813)
Q Consensus 150 heYvr~l~~~i~~~y--~~~~~~~--~~~~~L~~lv~~iv~~~l~~n~e~eAvdlalE~~~---ld~i~~~vd~~~~~rv 222 (813)
.++|..|..||.|.- ++..-++ -+-.++.+|+.+.|+|.+ ++|.||+.+||.+++ +|.=..|++.--|+.+
T Consensus 29 n~~vDqlwpeIsddl~~Ie~lydd~sf~~remaaL~~SKvYy~L--geY~~Ai~yAL~agdrfl~D~~S~y~etiv~k~i 106 (926)
T COG5116 29 NAHVDQLWPEISDDLRYIEALYDDDSFDPREMAALCLSKVYYVL--GEYQQAIEYALRAGDRFLVDDGSFYYETIVYKSI 106 (926)
T ss_pred HHHHHHhhhhhhchhhHHHHhhccCCCCHHHHHHHHHHHHHHHH--HhHHHHHHHHHhcCCceeecCCccceehhHHhHH
Confidence 467777888887764 3322222 224689999999999999 999999999999997 3444456666667888
Q ss_pred HHHHHhhcccCCCCC----cH---HHHHHHHHHHHccCCHHHHHHHHHhCCChHHHHHHHHhcchH-HHHHHH--HHHH-
Q 003521 223 CLYLTSAAKYLPGPD----DM---LVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDL-LRKKQF--CYIL- 291 (813)
Q Consensus 223 ~~Yl~~~~~~~~~p~----~~---~vl~~~~~iy~~~~~~~~al~~al~l~d~~~i~~i~~~~~d~-~~~~Ql--af~l- 291 (813)
-.|+..+..-...++ |. -|++.+.+-+.+.+++.-++.+++.--+.|.++.+++.-.|. .+.|-+ |.-+
T Consensus 107 em~vh~~~~~y~~~~~d~iD~~l~~v~e~i~~kc~~~se~~~~lgIa~eg~rldiie~~l~~~~d~di~~ylL~Lait~v 186 (926)
T COG5116 107 EMYVHMMDSAYIGGDKDIIDRILDFVLEVIGAKCVDDSEIGYLLGIAAEGLRLDIIEKYLSDGNDCDIINYLLDLAITLV 186 (926)
T ss_pred HHHHHHHHHhhhCCCcccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHh
Confidence 889888876665555 33 588999999999999999999999999999999998864332 122222 2211
Q ss_pred ----Hhhccc---ccc-cCCCC-------------CC----------------------------cchHHHHHHHHcccC
Q 003521 292 ----ARHGIT---LEL-DDDMV-------------PD----------------------------DDDRYALQDIVNNVK 322 (813)
Q Consensus 292 ----arq~~~---~~~-~~~~~-------------~~----------------------------~~~~~~l~~il~n~~ 322 (813)
.|..++ .++ ...+. +| +...+++.+||-.+-
T Consensus 187 ~~~~fr~~ilr~l~~~~~~~~~pdyf~v~k~vv~LnDa~~a~~L~~kL~~end~~l~aqvAFdledsasqe~leil~t~~ 266 (926)
T COG5116 187 EEEGFRKEILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKALIEKLVKENDLLLYAQVAFDLEDSASQEILEILVTEL 266 (926)
T ss_pred hhHHHHHHHHHHHHHhcCCCCCCcEEEEeEEEEEeccHHHHHHHHHHHHhhhhhhhhhhheehhccccCHHHHHhccchh
Confidence 132221 111 00000 00 001233334444443
Q ss_pred cchhHHHHHHHhhccCCCChHHHHHhhhccCCCCcCcchhHHHHhHHHHHHHHHHhcccCCccccccCCCCCCCCCCCcc
Q 003521 323 LSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNW 402 (813)
Q Consensus 323 l~~~~~~~~~~l~i~~~k~~e~iyK~~l~~~r~~~~~~~dsa~~~la~~~~na~vnaG~~~D~~l~~~~~~~~~~~~~~w 402 (813)
..+.|- -..++|+.+....++|.+||.++++++...+++++.+++.-|.- |-++++-...||.-. |++++|
T Consensus 267 vA~~~d--~av~~ILSGe~t~ky~~~FLl~~nntd~~~Ln~sk~sl~~k~s~-fH~avs~AN~fMn~G------Ts~dsf 337 (926)
T COG5116 267 VAQGYD--QAVMSILSGEFTKKYLGAFLLEKNNTDFKFLNSSKSSLARKFSR-FHYAVSLANSFMNLG------TSNDSF 337 (926)
T ss_pred hhcccc--HHHHHHhcCcchhHHHHHHHHhcCCcceeehhcchhhhhhhhhh-hhhHHHHHHHHhhcC------CCcchH
Confidence 333332 24678999999999999999888888888999999999874432 555666678888543 668889
Q ss_pred ccccchhhHHHHHHHhhhhcccccchhHHhHhhhhcCCChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcCCC---H
Q 003521 403 LFKNKEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRED---A 479 (813)
Q Consensus 403 l~k~~~~~k~sA~aslGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~~---~ 479 (813)
+..|-+| |.+.++|.|+.|..+||+||.|+.++ .++.|.+||+.+. .
T Consensus 338 ~r~Nl~w---------------------------lgka~nWaKFtatAslGvIH~gn~n~---~~~il~pYLP~e~ass~ 387 (926)
T COG5116 338 YRNNLDW---------------------------LGKASNWAKFTATASLGVIHLGNSNP---GYEILKPYLPSEVASSR 387 (926)
T ss_pred hhcCchh---------------------------hhhcchHhhhhhhhhceeEeeccCCc---hhHhhhccCCcccchhh
Confidence 8888888 56788999999999999999999887 8999999998754 4
Q ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHhccCC--CCchhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCccccCch
Q 003521 480 CIRIGAIMGLGISYAGTQNDQIRHKLSTILNDA--KSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEP 557 (813)
Q Consensus 480 ~v~~gA~lGLGl~y~Gs~~e~i~e~L~~~L~d~--~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~~~l~e~ 557 (813)
....||.+|||++++|.+ ++..|+|+..+.++ ....+++++++||+||+.|||.|.++++.+.+.+... ..-
T Consensus 388 ~~eGGalyalGLI~Agfg-r~~TeYL~e~~~~teDe~~~~l~yG~~LGiGL~~MgSan~eiye~lKe~l~nD-----~a~ 461 (926)
T COG5116 388 QKEGGALYALGLIKAGFG-REDTEYLLEYFLDTEDELTPELAYGVCLGIGLINMGSANREIYEKLKELLKND-----RAL 461 (926)
T ss_pred hccCceeeeehhhccCcC-cccHHHHHHHhCcccccccHHHHHHHHhhhcchhcccccHHHHHHHHHHHhcc-----hhh
Confidence 677899999999999955 57899999777543 3456788999999999999999999999999988642 223
Q ss_pred hHHHHHHHHHHhhcCChhhHHHHHHHhhhhhhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhcccCCCCcchhhHHHHH
Q 003521 558 LTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLG 637 (813)
Q Consensus 558 ~~r~~~lglgLl~lG~~e~~~~~i~~L~~~~~p~~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~Avlg 637 (813)
...++++|+||+++ ||+.+.+|..|++|+.+++++ .+.|+..+|
T Consensus 462 ~geAa~~gMGl~mL----------------------------------gt~s~eai~dm~tya~ETqhe--~i~Rglgig 505 (926)
T COG5116 462 LGEAAVYGMGLLML----------------------------------GTWSVEAIEDMRTYAGETQHE--RIKRGLGIG 505 (926)
T ss_pred hhhhhhhccceeee----------------------------------cCCCHHHHHHHHHHhcchhhh--hHHhhhhhh
Confidence 56778889998885 899999999999999999998 999999999
Q ss_pred HHHhhccchhhHHHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchhHHHHHHHh-hcCCchHHHHHHHHHHHHHcCC
Q 003521 638 IAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRL-SHDTDSEVAMAAVISLGLIGSG 716 (813)
Q Consensus 638 lalI~~~~~~g~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~~~~aid~L~~l-~~D~d~~Vr~~AiiAlGlV~aG 716 (813)
++||.+|++ ||+.+++..|..+.+|..||+..+++|++|+||||..++.+|.++ .+|.+|+||++|+||+|||.+.
T Consensus 506 ~aLi~ygrq---e~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~ 582 (926)
T COG5116 506 FALILYGRQ---EMADDYINELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD 582 (926)
T ss_pred hhHhhhhhH---HHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhheeecccCchHHHHHHHHheeeeEec
Confidence 999999998 999999999999999999999999999999999999999998888 7999999999999999999999
Q ss_pred CCc--hHHHHHHHHHhhhhccChhhHHHHHHHHhhhhcCCCccc----ccccCCCC-CCCChHHHHHHHHHHhhhcccc
Q 003521 717 TNN--ARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLT----LNPYHSDR-FLLSPTALAGIVTTLFACLDMK 788 (813)
Q Consensus 717 t~n--~rv~~~Lr~l~~~~~~d~~~~f~~~lAqGll~~G~g~~t----lsp~~sd~-~~~~~~a~~gL~~~l~~~ld~~ 788 (813)
..+ ++..++|.. +.|+++|.|+.+|+||.|+|+|.-. |+|+..|. +|+||.|+||+.+++.+|-|--
T Consensus 583 D~~~lv~tvelLs~-----shN~hVR~g~AvaLGiacag~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L 656 (926)
T COG5116 583 DRDLLVGTVELLSE-----SHNFHVRAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL 656 (926)
T ss_pred CcchhhHHHHHhhh-----ccchhhhhhhHHHhhhhhcCCccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence 887 466666665 5799999999999999999999873 89998997 9999999999999999876543
No 7
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-39 Score=357.44 Aligned_cols=473 Identities=18% Similarity=0.262 Sum_probs=371.9
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCChhhhHHHhhc---cChHHHHHHHHhhcccCCCCC-cHHHHHHHHHHHH
Q 003521 175 DDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDA---TNFKRTCLYLTSAAKYLPGPD-DMLVLDIAYMIYL 250 (813)
Q Consensus 175 ~~L~~lv~~iv~~~l~~n~e~eAvdlalE~~~ld~i~~~vd~---~~~~rv~~Yl~~~~~~~~~p~-~~~vl~~~~~iy~ 250 (813)
++=..+.+.+...++|.|++++|+.+|+..++.+.+.++++. ..++..|.|++...+...+-. +.++-.++.+-
T Consensus 236 Pdd~~ll~~a~~IYlKf~~~~~al~~ai~l~~~~~v~~vf~s~~D~~~kKQ~~ymLaR~~i~~e~~~~e~l~di~sN~-- 313 (878)
T KOG2005|consen 236 PDDVALLRTALKIYLKFNEYPRALVGAIRLDDMKEVKEVFTSCTDPLLKKQMAYMLARHGIYFELSEDEELQDILSNG-- 313 (878)
T ss_pred chhhHHHHHHHHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHhccCHHHHHHHHHHHHhcCCceecCcCHHHHHHHccc--
Confidence 454678888899999999999999999999999999999876 447899999999998777654 35566666666
Q ss_pred ccCCHHHHHHHHHhCCChHHHHHHHHhc-chHHHHHHHHHHHHhhcccccccCCCCCCcchHHHHHHHHcccCcchhHHH
Q 003521 251 KFEEFPNALQIALFLDNMQYVKQIFTSC-DDLLRKKQFCYILARHGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLT 329 (813)
Q Consensus 251 ~~~~~~~al~~al~l~d~~~i~~i~~~~-~d~~~~~Qlaf~larq~~~~~~~~~~~~~~~~~~~l~~il~n~~l~~~~~~ 329 (813)
+.++++.++.--+.+.+|+..++||+.. +|...----.-+.|||++...+ .+.|++
T Consensus 314 ~Lse~f~~LarELeimepk~pedIyK~hl~~~r~~s~a~vdSarqnla~~f-----------------------vNgFVn 370 (878)
T KOG2005|consen 314 KLSEHFLYLARELEIMEPKVPEDIYKSHLEDSRGGSGAGVDSARQNLAATF-----------------------VNGFVN 370 (878)
T ss_pred cHHHHHHHHHHHhcccCCCChHHHHHHHHhccccccccCccHHHHHHHHHH-----------------------HHHHhh
Confidence 4457999999999999999999999986 3321101111344556554433 234554
Q ss_pred H--HHHhhccCCC--ChHHHHHhhhccCCCCcCcchhHHHHhHHHHHHHHHHhcccC-CccccccCCCCCCCCCCCcccc
Q 003521 330 L--ARDIEVMEPK--SPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFG-QDKLMTVPSDASSGGSSGNWLF 404 (813)
Q Consensus 330 ~--~~~l~i~~~k--~~e~iyK~~l~~~r~~~~~~~dsa~~~la~~~~na~vnaG~~-~D~~l~~~~~~~~~~~~~~wl~ 404 (813)
. +++.-++++. -..|+||+..+ .+-||.++++.+..| -+..|.. -|++ +|
T Consensus 371 ~Gyg~Dkl~~~~~~s~~~w~yknke~--------g~~sa~aS~G~I~~W-nvd~gL~qldky----------------ly 425 (878)
T KOG2005|consen 371 AGYGQDKLMLVQEGSRVNWLYKNKEH--------GMTSAAASLGMIQLW-NVDKGLEQLDKY----------------LY 425 (878)
T ss_pred cccCCCceeccCccccCcceeecccc--------CchHhhhhcchhhee-cchhhHHHHHHH----------------hh
Confidence 3 4555555544 56799998754 233677777665443 5555544 4554 45
Q ss_pred ccchhhHHHHHHHhhhhccc---ccchhHHhHhhhhcCCChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcCCCHH-
Q 003521 405 KNKEHGKMSAAASLGMILLW---DVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDAC- 480 (813)
Q Consensus 405 k~~~~~k~sA~aslGlI~~~---~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~~~~- 480 (813)
.+.++.|.+|..++|++..| +.++++++|.+|+.+++...+.||++|||++++|..+|. ++.+|+|.+.+.+..
T Consensus 426 s~~~~ikaGaLLgigi~~~gv~ne~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~--V~~lL~Pi~~d~~~~~ 503 (878)
T KOG2005|consen 426 SDESYIKAGALLGIGISNSGVFNECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREE--VLELLSPIMFDTKSPM 503 (878)
T ss_pred cCCchhhhccceeeeeeccccccccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHH--HHHHHhHHhcCCCCch
Confidence 56669999999999999987 467899999999999999999999999999999998764 887999999887655
Q ss_pred -HHHHHHHHHHHHhccCCCHHHHHHHHHhccCCC---CchhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCccccCc
Q 003521 481 -IRIGAIMGLGISYAGTQNDQIRHKLSTILNDAK---SPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGE 556 (813)
Q Consensus 481 -v~~gA~lGLGl~y~Gs~~e~i~e~L~~~L~d~~---~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~~~l~e 556 (813)
+...|.++||++|+||||+|+...+++.+++.+ ....+.++-+||||++|+|++ |.+++....++. ..+
T Consensus 504 ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~LGL~llflgkq--e~~d~~~e~~~~-----i~~ 576 (878)
T KOG2005|consen 504 EVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQ--ESVDAVVETIKA-----IEG 576 (878)
T ss_pred hHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhccc--chHHHHHHHHHH-----hhh
Confidence 666899999999999999999999999987432 334578899999999999999 777787777653 357
Q ss_pred hhHHHHHH-HHHHhhcCChh--hH--HHHHHHhhhhhhhhhhhhhHHHHHHHHhcCCCH----HH---HHHHHhhhcccC
Q 003521 557 PLTRLIPL-GLGLLYLGKQE--SV--EATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNV----LK---VQNLLGHCAQHH 624 (813)
Q Consensus 557 ~~~r~~~l-glgLl~lG~~e--~~--~~~i~~L~~~~~p~~r~~~~~~~glAyaGTGn~----~~---iq~LL~~~~~~~ 624 (813)
++.+++.+ ..+|.|.|+++ .+ +.++..+.+....--......++|||.+..|+. ++ +.+||||..+
T Consensus 577 ~~~~~~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~lR~f~h~l~yge~-- 654 (878)
T KOG2005|consen 577 PIRKHESILVKSCAYAGTGNVLKIQSQLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEMVLRHFGHLLHYGEP-- 654 (878)
T ss_pred HHHHHHHHHHHHhhccccCceEEechhhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHcCCH--
Confidence 88888876 45899999988 34 566677766554555556688999999999874 23 3467888654
Q ss_pred CCCcchhhHHHHHHHHhhccchhhHHHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchhHHHHHHHhh----cCCch
Q 003521 625 EKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLS----HDTDS 700 (813)
Q Consensus 625 ~d~~~vrr~AvlglalI~~~~~~g~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~~~~aid~L~~l~----~D~d~ 700 (813)
.+||+.++++|+++.++| +-.+.+++++++|+.|+.|.+.+++||||+.|||+|.++..+|+.++ +|++.
T Consensus 655 ----~iRravPLal~llsvSNP--q~~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNARla~mLrqlaSYyyKd~~~ 728 (878)
T KOG2005|consen 655 ----HIRRAVPLALGLLSVSNP--QVNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNARLAQMLRQLASYYYKDSKA 728 (878)
T ss_pred ----HHHHHHHHHHhhhccCCC--cchHHHHHHHhccCcchHHHHHHHHHhccccCCcchHHHHHHHHHHHHHHhccchh
Confidence 799999999999999999 36799999999999999999999999999999999999999998875 57665
Q ss_pred H--HHHHHHHHHHHHcCCCC
Q 003521 701 E--VAMAAVISLGLIGSGTN 718 (813)
Q Consensus 701 ~--Vr~~AiiAlGlV~aGt~ 718 (813)
. || ||+|++..|.+
T Consensus 729 Lf~vr----iAQGL~hlGKG 744 (878)
T KOG2005|consen 729 LFVVR----IAQGLVHLGKG 744 (878)
T ss_pred HHHHH----HHHHHHHhcCC
Confidence 3 44 99999999966
No 8
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-33 Score=305.10 Aligned_cols=560 Identities=18% Similarity=0.221 Sum_probs=407.7
Q ss_pred cCCCccc--hhhhhHHHHHHHHhcC---C---CcchHHHHHHHHHHHHhhccccccccchhhhhcCCCCCCCCcccHHHH
Q 003521 83 SVPKPLK--FLRPHYGTLKAYYETM---P---DSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVR 154 (813)
Q Consensus 83 svpkplk--~l~~~~~~l~~~ye~~---~---~~~~k~~~AdilS~l~~t~~~~~~~~~L~y~L~~~~~d~~~wgheYvr 154 (813)
+=||-|- |+|--...|.+.|.+. . |.+.|.+.-+|+-++. -|. ...|++.+-++=+..+ .- -.||.
T Consensus 144 ~D~~~WGHeYvrhLa~eI~ev~n~~~e~daps~~dt~~l~l~ivpffl--kHN-aE~dAiDlL~Evg~Ie--kv-~~fVd 217 (881)
T COG5110 144 IDLKEWGHEYVRHLAGEIAEVKNDQNEMDAPSFADTRDLGLEIVPFFL--KHN-AEFDAIDLLVEVGGIE--KV-LDFVD 217 (881)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcchhhccCCchhHHHHHHHHHhHHHH--hcc-cchHHHHHHHHhcchh--hh-hhhhc
Confidence 3355553 5666777788888622 1 3346777778877764 333 3457777665532211 00 12332
Q ss_pred HHHHHHHHHHHHhccCccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCChhhhHHHhhc---cChHHHHHHHHhhcc
Q 003521 155 NLAGEIAQEYAKRQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDA---TNFKRTCLYLTSAAK 231 (813)
Q Consensus 155 ~l~~~i~~~y~~~~~~~~~~~~L~~lv~~iv~~~l~~n~e~eAvdlalE~~~ld~i~~~vd~---~~~~rv~~Yl~~~~~ 231 (813)
+=-..=+--|..-+..--+-++-.++.+.+...+++.|+..+|+-.|++.+..+.|.++++. ..|.+.|+|++..++
T Consensus 218 ~~n~~RvclYl~~cv~llp~pedVa~l~ta~~IYlk~~~lt~av~~aiRl~~~~~i~e~~~a~~Dp~~kKQ~~YiLArq~ 297 (881)
T COG5110 218 THNYNRVCLYLEDCVPLLPPPEDVALLETALKIYLKMGDLTRAVVGAIRLQKSKEIIEYVRAIEDPDYKKQCLYILARQN 297 (881)
T ss_pred ccchhHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHhcccHHHHHHHHHhccChHHHHHHHHHHHhcc
Confidence 22111122344433332233566888899999999999999999999999999999999875 568999999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHhCCChHHHHHHHHhc-chHHHHHHHH-HHHHhhcccccccCCCCCCcc
Q 003521 232 YLPGPDDMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSC-DDLLRKKQFC-YILARHGITLELDDDMVPDDD 309 (813)
Q Consensus 232 ~~~~p~~~~vl~~~~~iy~~~~~~~~al~~al~l~d~~~i~~i~~~~-~d~~~~~Qla-f~larq~~~~~~~~~~~~~~~ 309 (813)
...+-.|.++-.++.+-|.+ +++.+++.-+.+.+|+..++||+.+ +...--+|.| ...|.|++...+.
T Consensus 298 ~~~e~~dee~~dil~Ng~ls--dhf~ylgkELnl~~PkvpedI~K~hl~~~k~~~~~agi~sA~qnla~~fv-------- 367 (881)
T COG5110 298 LYYEASDEEEKDILSNGYLS--DHFRYLGKELNLDKPKVPEDILKGHLKYDKDTRQLAGIGSANQNLAMGFV-------- 367 (881)
T ss_pred CCcccCCHHHHHHhcCCcHH--HHHHHHHHHhcCCCCCChHHHHHhhhhccccchhhcccchhhhHHHHhhh--------
Confidence 88887777776777776544 7999999999999999999999984 4444456666 5667777766542
Q ss_pred hHHHHHHHHcccCcchhHHHHHHHhhccCCCChHHHHHhhhccCCCCcCcchhHHHHhHHHHHHHHHHhcccC-Cccccc
Q 003521 310 DRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFG-QDKLMT 388 (813)
Q Consensus 310 ~~~~l~~il~n~~l~~~~~~~~~~l~i~~~k~~e~iyK~~l~~~r~~~~~~~dsa~~~la~~~~na~vnaG~~-~D~~l~ 388 (813)
+.+++++.+.+-+-|..-+||||.... .+-||.++.+....| -+..|.. -|+
T Consensus 368 ---------------n~~inlgy~nD~li~~dd~wiyk~k~~--------gliSa~aSIG~i~~W-N~d~gl~~Ldk--- 420 (881)
T COG5110 368 ---------------NDPINLGYENDSLIPLDDEWIYKCKVP--------GLISAFASIGVIESW-NSDKGLETLDK--- 420 (881)
T ss_pred ---------------ccccccCccCCeeeecchhhhhcCCCC--------Chhheeecchhhhhh-hhHhhHHHHHH---
Confidence 234556667777777778999997633 344666666654433 3333322 333
Q ss_pred cCCCCCCCCCCCccccccchhhHHHHHHHhhhhccccc---chhHHhHhhhhcCCChhhHHHHHHHHHHhhcCCCCChhh
Q 003521 389 VPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDV---DSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDP 465 (813)
Q Consensus 389 ~~~~~~~~~~~~~wl~k~~~~~k~sA~aslGlI~~~~~---~~~l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~d~ 465 (813)
++|....+.|.+|..++|+-..+.. ++++.+|++|+.+++.-.+..|++|||++++|..+|.
T Consensus 421 -------------yly~de~~~KaGaLLGig~s~~~v~~E~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~ee-- 485 (881)
T COG5110 421 -------------YLYADESYRKAGALLGIGLSGLRVFEERPPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQAEE-- 485 (881)
T ss_pred -------------HHhcCcccccccceeeeeecccccccccchHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcHHH--
Confidence 5566667899999999999877644 5689999999999999999999999999999997664
Q ss_pred HHHHHHHhhcCCCHH--HHHHHHHHHHHHhccCCCHHHHHHHHHhcc-CC--CCchhHHHHHHHHHhhHhcCCCCHHHHH
Q 003521 466 ALALLSEYVGREDAC--IRIGAIMGLGISYAGTQNDQIRHKLSTILN-DA--KSPLDVIAFSAISLGLIYVGSCNEEVAQ 540 (813)
Q Consensus 466 ~~~lL~~~L~~~~~~--v~~gA~lGLGl~y~Gs~~e~i~e~L~~~L~-d~--~~~~e~~~~AaLaLGLi~lGs~~~e~~e 540 (813)
++.+|+|...+++.+ +...|.+.||.+|+||||+|+...+++.+. .. +...++-++.+||||++|.|.+ +.++
T Consensus 486 vl~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD~ts~ilqtf~Er~~~e~~tqw~RFlaLgLa~Lf~g~~--d~~d 563 (881)
T COG5110 486 VLELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDLTSLILQTFVERGKIESETQWFRFLALGLASLFYGRK--DQVD 563 (881)
T ss_pred HHHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHcccc--chhH
Confidence 999999999887764 455889999999999999999999998885 22 3445678899999999999998 4455
Q ss_pred HHHHHHhccCccccCchhHHHHHH-HHHHhhcCChh--hHHHHHHHhhhhhhhh-----hhhhhHHHHHHHHhcCCCH--
Q 003521 541 AIIFALMDRSESELGEPLTRLIPL-GLGLLYLGKQE--SVEATAEVSKTFNEKI-----RKYCDMTLLSCAYAGTGNV-- 610 (813)
Q Consensus 541 ~ll~~L~~~~~~~l~e~~~r~~~l-glgLl~lG~~e--~~~~~i~~L~~~~~p~-----~r~~~~~~~glAyaGTGn~-- 610 (813)
+...+++.- ..++.+...+ .-|+-|.|+++ .++.++..+......- .-.-...++|||.+..|+.
T Consensus 564 ~v~eti~aI-----eg~ls~~~eiLv~~c~Y~GTGdvl~Iq~lLhv~~e~~~D~~k~~ea~ie~~a~Lg~AliamGedig 638 (881)
T COG5110 564 DVEETIMAI-----EGALSKHEEILVKGCQYVGTGDVLVIQSLLHVKDEFTGDTLKNEEALIESLALLGCALIAMGEDIG 638 (881)
T ss_pred HHHHHHHHh-----cchhhhhHHHHHhhceecccCcHHHHHHHHhccCCCCcccchhhHHHHHHHHHhhhHHhhhcchhh
Confidence 555555431 2234444433 44788888887 5677777544322111 1122245788999988863
Q ss_pred -----HHHHHHHhhhcccCCCCcchhhHHHHHHHHhhccchhhHHHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCch
Q 003521 611 -----LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV 685 (813)
Q Consensus 611 -----~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~~~ 685 (813)
..+.+++||..+ .+|++.++++|++..++| +-.+.+++++.+|+++.+|.+..++||||+.|||.|.
T Consensus 639 ~eMvlRhf~h~mhyg~~------hiR~~~PLa~gils~SnP--Qm~vfDtL~r~shd~dl~v~~ntIfamGLiGAGT~Na 710 (881)
T COG5110 639 SEMVLRHFSHSMHYGSS------HIRSVLPLAYGILSPSNP--QMNVFDTLERSSHDGDLNVIINTIFAMGLIGAGTLNA 710 (881)
T ss_pred HHHHHHHhhhHhhcCcH------HHHHHHHHHHhcccCCCc--chHHHHHHHHhccccchhHHHHHHHHhhccccCcchH
Confidence 233457777654 689999999999999999 3569999999999999999999999999999999999
Q ss_pred hHHHHHHHhh----cCCchH-HHHHHHHHHHHHcCCCC
Q 003521 686 NVMDTLSRLS----HDTDSE-VAMAAVISLGLIGSGTN 718 (813)
Q Consensus 686 ~aid~L~~l~----~D~d~~-Vr~~AiiAlGlV~aGt~ 718 (813)
++..+|+++. ++++.. |- .||+|++..|.+
T Consensus 711 RlaqlLrQlaSYY~kes~aLfv~---riAQGLl~LGKG 745 (881)
T COG5110 711 RLAQLLRQLASYYYKESKALFVL---RIAQGLLSLGKG 745 (881)
T ss_pred HHHHHHHHHHHHHhhccchhhHH---HHHHHHHHhcCC
Confidence 9999998774 555543 22 399999999866
No 9
>KOG1858 consensus Anaphase-promoting complex (APC), subunit 1 (meiotic check point regulator/Tsg24) [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.7e-26 Score=273.31 Aligned_cols=385 Identities=20% Similarity=0.267 Sum_probs=280.0
Q ss_pred ccchhhHHHHHHHhhhhccc---ccchhHHhHhhhhcCCChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcCCCHHH
Q 003521 405 KNKEHGKMSAAASLGMILLW---DVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACI 481 (813)
Q Consensus 405 k~~~~~k~sA~aslGlI~~~---~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~~~~v 481 (813)
.-++|+.|.+..|.|+--.- .++.. +|.-.-|.+.+..++|-++|||+- ||...- ..--+-.||...++.+
T Consensus 814 ~~teWp~FhngVa~GLrIsp~~~~Ids~--WI~fnkp~~~~a~haGfl~glGLn--GhL~~L--~~~~i~qyls~~h~~t 887 (1496)
T KOG1858|consen 814 ELTEWPEFHNGVASGLRISPFATEIDSS--WIVFNKPKELTAEHAGFLFGLGLN--GHLKAL--NTWHIYQYLSPKHEMT 887 (1496)
T ss_pred ccccchhhHHHHHhhcccCcccccccce--eEEEecCCCcchheeheeeecccc--cccccc--cHHHHHHHccCCCcce
Confidence 44789999999999983321 12211 121112456788999999999994 443321 1122346788889999
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHhcc---C-C----CCchhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCc--
Q 003521 482 RIGAIMGLGISYAGTQNDQIRHKLSTILN---D-A----KSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSE-- 551 (813)
Q Consensus 482 ~~gA~lGLGl~y~Gs~~e~i~e~L~~~L~---d-~----~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~-- 551 (813)
.+|-++||+.+|.||++.++...|.-+|. . + +++.-++.+|.+|+||+|.||++..+.+.+++.+.....
T Consensus 888 SvgLLlGlsaS~~GtmD~ki~Kllsvhl~allp~ts~El~i~~~iQtAaIvGlGlLy~gS~h~~iaevL~~Eigr~~~~e 967 (1496)
T KOG1858|consen 888 SVGLLLGLSASYRGTMDAKITKLLSVHLSALLPATSTELNIPLLIQTAAIVGLGLLYAGSAHRRIAEVLLAEIGRPPNPE 967 (1496)
T ss_pred eHHHHhhhhHhhcCccchhHHHHHHHHHhhcCCCCcccccCchhhhhhhhhhhhheecCcchHHHHHHHHHHhcCCCCcc
Confidence 99999999999999999999988876653 1 1 122334668889999999999999999999998764422
Q ss_pred --cccCchhHHHHHHHHHHhhcCChhhH---------HHHHHHhh-------------------------hhhhhhhhhh
Q 003521 552 --SELGEPLTRLIPLGLGLLYLGKQESV---------EATAEVSK-------------------------TFNEKIRKYC 595 (813)
Q Consensus 552 --~~l~e~~~r~~~lglgLl~lG~~e~~---------~~~i~~L~-------------------------~~~~p~~r~~ 595 (813)
++ +|.+.+++++++||+++|+++.. +.+..-+. ..+-.+..+|
T Consensus 968 ~~~~-rE~Y~laAG~SLGLi~LG~G~~~~g~~d~~~~~~l~~ym~~g~~r~~~~~~~~~~~~~~q~~eg~t~~~dv~~pG 1046 (1496)
T KOG1858|consen 968 NVLE-REGYKLAAGFSLGLINLGRGSNLPGMSDLKLVSRLLVYMVGGVRRPIDVPQNEKYRSSTQILEGSTSNLDVTAPG 1046 (1496)
T ss_pred cchh-hhhhhhhcCcccceeeeccCCCCcchhcccchHHHHHHhhccccccccccccccccchhhhccCceeeeecCCcc
Confidence 23 67899999999999999998742 22222222 0011344679
Q ss_pred hHHHHHHHHhcCCCHHHHHHH--------HhhhcccCCCCcchhhHHHHHHHHhhccchhhH------HHHHHHHHHHhh
Q 003521 596 DMTLLSCAYAGTGNVLKVQNL--------LGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGL------EMAIRSLEHLLQ 661 (813)
Q Consensus 596 ~~~~~glAyaGTGn~~~iq~L--------L~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~------e~~~~~l~~L~~ 661 (813)
+++|+++.|..|+|..+...| |.+.. ++.--..++|..+|++.+ ++. .++++.+..-..
T Consensus 1047 AviAl~mmflktnn~~Ia~~l~~p~t~yll~~vr------Pd~l~lR~~a~~lImW~~-I~p~~~wv~~~vp~~ir~~~~ 1119 (1496)
T KOG1858|consen 1047 AVIALGMMFLKTNNFEIANALRPPDTRYLLDFVR------PDFLLLRVIARNLIMWDR-IKPDYDWVKSQVPDVIREQAD 1119 (1496)
T ss_pred HHHHHHHHHHHhchHHHHhhcCCCchhhHHhhcc------hHHHHHHHHHhhhhHHHh-hCchHHHHHhhCCHHHHHhhh
Confidence 999999999999997655432 33322 244556789999998854 321 234554432111
Q ss_pred c-----------CChhHHhHHHHHHhhhccCCCchhHHHHHHHhhcC-------------Cc--hH----HHHHHHHHHH
Q 003521 662 Y-----------GEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHD-------------TD--SE----VAMAAVISLG 711 (813)
Q Consensus 662 ~-----------~~~~VR~g~~lALGL~~aGt~~~~aid~L~~l~~D-------------~d--~~----Vr~~AiiAlG 711 (813)
+ .--++-.|+|+++||-+|||+|.++.++|..+..| .+ .. .-+--|+++.
T Consensus 1120 ~~~dvd~~tl~q~~~~~~aGac~slgLrfagt~n~~aknil~s~v~~fl~l~~~P~~~~~~~~~~~tv~~cl~v~i~sls 1199 (1496)
T KOG1858|consen 1120 LQEDVDLETLSQAYVNILAGACFSLGLRFAGTGNLKAKNILNSFVDDFLRLCSLPLKSNDGRVTAVTVERCLSVLIISLS 1199 (1496)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHHHhhccCccCCCcccchhHHHHHHHHHHHHH
Confidence 1 12467899999999999999999999999876422 10 11 1134589999
Q ss_pred HHcCCCCchHHHHHHHHHhhhhccCh----hhHHHHHHHHhhhhcCCCcccccccCCCCCCCChHHHHHHHHHHhhhccc
Q 003521 712 LIGSGTNNARIAGMLRNLSSYYYKDA----NLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDM 787 (813)
Q Consensus 712 lV~aGt~n~rv~~~Lr~l~~~~~~d~----~~~f~~~lAqGll~~G~g~~tlsp~~sd~~~~~~~a~~gL~~~l~~~ld~ 787 (813)
+|++|++|..|.+.+|.|.+..+..+ ...+++++|+||+.+|+|+.|++. ++.+++.+++.+++.++.
T Consensus 1200 ~vmagSgdleVlr~~r~Lr~~~~~~~~~~yg~~ma~h~alGil~lG~Gr~t~s~--------s~~sIa~ll~slfp~fP~ 1271 (1496)
T KOG1858|consen 1200 MVMAGSGDLEVLRRLRFLRSRTSPYGHMNYGAQMATHMALGILFLGGGRYTIST--------SNLSIAALLISLFPHFPI 1271 (1496)
T ss_pred HHHhhcCchHHHHHHHHHHHhccCCCcccchhHHHHHHhhceeEecCcccccCC--------CcHHHHHHHHHhCCCCCC
Confidence 99999999888888888877654222 367889999999999999999997 479999999999999988
Q ss_pred ccccccchhH--HHHHHhhhhcccccC
Q 003521 788 KAVIVGKYHY--VLYFLVLAMQNVTDC 812 (813)
Q Consensus 788 ~~~i~~~~~~--l~~~l~~a~~Pr~l~ 812 (813)
.+. .++||. ++|++++|++||+++
T Consensus 1272 ~~~-Dnr~hlqalR~l~~La~e~r~li 1297 (1496)
T KOG1858|consen 1272 SPS-DNRYHLQALRHLYVLAVEPRLLI 1297 (1496)
T ss_pred CCc-ccHHHHHHHHHHHHHhccccccc
Confidence 876 567777 999999999999985
No 10
>PRK09687 putative lyase; Provisional
Probab=99.21 E-value=4.4e-09 Score=113.83 Aligned_cols=244 Identities=13% Similarity=0.101 Sum_probs=134.1
Q ss_pred HHhHhhhhcCCChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCC---CHHHHHHHH
Q 003521 430 LAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQ---NDQIRHKLS 506 (813)
Q Consensus 430 l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~---~e~i~e~L~ 506 (813)
...|.++|.+++..++..|+.+|+.+.. +.++..+...+.++++.+|..|+-+||-+ |.. ..++...|.
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~------~~~~~~l~~ll~~~d~~vR~~A~~aLg~l--g~~~~~~~~a~~~L~ 96 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG------QDVFRLAIELCSSKNPIERDIGADILSQL--GMAKRCQDNVFNILN 96 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc------chHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCccchHHHHHHHH
Confidence 4456677888888899999999887653 22777777878888889999999998884 432 256778887
Q ss_pred Hhc-cCCCCchhHHHHHHHHHhhHhcCCCC----HHHHHHHHHHHhccCccccCchhHHHHHHHHHHhhcCChhhHHHHH
Q 003521 507 TIL-NDAKSPLDVIAFSAISLGLIYVGSCN----EEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATA 581 (813)
Q Consensus 507 ~~L-~d~~~~~e~~~~AaLaLGLi~lGs~~----~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~lG~~e~~~~~i 581 (813)
..+ .|+ ..+|...|+-+||-+ |+.. .++.+.+...+.+ .+..+|+.+ +.+|..+|.++.++.++
T Consensus 97 ~l~~~D~--d~~VR~~A~~aLG~~--~~~~~~~~~~a~~~l~~~~~D------~~~~VR~~a-~~aLg~~~~~~ai~~L~ 165 (280)
T PRK09687 97 NLALEDK--SACVRASAINATGHR--CKKNPLYSPKIVEQSQITAFD------KSTNVRFAV-AFALSVINDEAAIPLLI 165 (280)
T ss_pred HHHhcCC--CHHHHHHHHHHHhcc--cccccccchHHHHHHHHHhhC------CCHHHHHHH-HHHHhccCCHHHHHHHH
Confidence 774 455 456666788888865 3322 2334444333221 122233322 22333445555555555
Q ss_pred HHhhhhhhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhcccCCCCcchhhHHHHHHHHhhccchhhHHHHHHHHHHHhh
Q 003521 582 EVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQ 661 (813)
Q Consensus 582 ~~L~~~~~p~~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e~~~~~l~~L~~ 661 (813)
..|. ++++.+|+.++.++|- .+.++..++..|.+...+ .++ +||..|+.|+|-+ +++ +-++.++.. ++
T Consensus 166 ~~L~-d~~~~VR~~A~~aLg~--~~~~~~~~~~~L~~~L~D-~~~--~VR~~A~~aLg~~--~~~---~av~~Li~~-L~ 233 (280)
T PRK09687 166 NLLK-DPNGDVRNWAAFALNS--NKYDNPDIREAFVAMLQD-KNE--EIRIEAIIGLALR--KDK---RVLSVLIKE-LK 233 (280)
T ss_pred HHhc-CCCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhcC-CCh--HHHHHHHHHHHcc--CCh---hHHHHHHHH-Hc
Confidence 5554 3444555555444332 244455555555544422 222 5566666655553 332 223333332 22
Q ss_pred cCChhHHhHHHHHHhhhccCCCchhHHHHHHHhhc-CCchHHHHHHHHHH
Q 003521 662 YGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSH-DTDSEVAMAAVISL 710 (813)
Q Consensus 662 ~~~~~VR~g~~lALGL~~aGt~~~~aid~L~~l~~-D~d~~Vr~~AiiAl 710 (813)
+++ +|..++-|||-+ |.++++..|.++.+ ++|..|++-|+-++
T Consensus 234 ~~~--~~~~a~~ALg~i----g~~~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 234 KGT--VGDLIIEAAGEL----GDKTLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred CCc--hHHHHHHHHHhc----CCHhHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 222 455555555544 33455555555554 55555555555443
No 11
>KOG1858 consensus Anaphase-promoting complex (APC), subunit 1 (meiotic check point regulator/Tsg24) [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2e-10 Score=140.78 Aligned_cols=346 Identities=18% Similarity=0.238 Sum_probs=202.9
Q ss_pred CCccccccchh--hH--HHHHHHhhhhcccccch-hHHhHhhhhcCCChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHh
Q 003521 399 SGNWLFKNKEH--GK--MSAAASLGMILLWDVDS-GLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEY 473 (813)
Q Consensus 399 ~~~wl~k~~~~--~k--~sA~aslGlI~~~~~~~-~l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~ 473 (813)
+.+||-=||.- .- .+-+.++|+ .||... ..-.+..||...++.+..|.++|++..|-|+.+. ++..+|+-|
T Consensus 839 ds~WI~fnkp~~~~a~haGfl~glGL--nGhL~~L~~~~i~qyls~~h~~tSvgLLlGlsaS~~GtmD~--ki~Kllsvh 914 (1496)
T KOG1858|consen 839 DSSWIVFNKPKELTAEHAGFLFGLGL--NGHLKALNTWHIYQYLSPKHEMTSVGLLLGLSASYRGTMDA--KITKLLSVH 914 (1496)
T ss_pred cceeEEEecCCCcchheeheeeeccc--ccccccccHHHHHHHccCCCcceeHHHHhhhhHhhcCccch--hHHHHHHHH
Confidence 45699766432 11 122444554 455543 2334667888899999999999999999999754 588999988
Q ss_pred hcC----C------CHHHHHHHHHHHHHHhccCCCHHHHHHHHHhccCC-CC----c-hhHHHHHHHHHhhHhcCCCCH-
Q 003521 474 VGR----E------DACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDA-KS----P-LDVIAFSAISLGLIYVGSCNE- 536 (813)
Q Consensus 474 L~~----~------~~~v~~gA~lGLGl~y~Gs~~e~i~e~L~~~L~d~-~~----~-~e~~~~AaLaLGLi~lGs~~~- 536 (813)
|.. . +..+|.+|++|+|+.|+||++..+.+.|..-+... .. . -.+..+|+++||||++|.|+.
T Consensus 915 l~allp~ts~El~i~~~iQtAaIvGlGlLy~gS~h~~iaevL~~Eigr~~~~e~~~~rE~Y~laAG~SLGLi~LG~G~~~ 994 (1496)
T KOG1858|consen 915 LSALLPATSTELNIPLLIQTAAIVGLGLLYAGSAHRRIAEVLLAEIGRPPNPENVLEREGYKLAAGFSLGLINLGRGSNL 994 (1496)
T ss_pred HhhcCCCCcccccCchhhhhhhhhhhhheecCcchHHHHHHHHHHhcCCCCcccchhhhhhhhhcCcccceeeeccCCCC
Confidence 864 1 36799999999999999999999999999888522 21 1 235779999999999999864
Q ss_pred ------HHHHHHHHHHhccC--------------cccc-------CchhHHHHHHHHHHhhcCChhh--HHH--------
Q 003521 537 ------EVAQAIIFALMDRS--------------ESEL-------GEPLTRLIPLGLGLLYLGKQES--VEA-------- 579 (813)
Q Consensus 537 ------e~~e~ll~~L~~~~--------------~~~l-------~e~~~r~~~lglgLl~lG~~e~--~~~-------- 579 (813)
...+.+..+|.+.. .+|+ -+.-+.++++++|++|+..++. ++.
T Consensus 995 ~g~~d~~~~~~l~~ym~~g~~r~~~~~~~~~~~~~~q~~eg~t~~~dv~~pGAviAl~mmflktnn~~Ia~~l~~p~t~y 1074 (1496)
T KOG1858|consen 995 PGMSDLKLVSRLLVYMVGGVRRPIDVPQNEKYRSSTQILEGSTSNLDVTAPGAVIALGMMFLKTNNFEIANALRPPDTRY 1074 (1496)
T ss_pred cchhcccchHHHHHHhhccccccccccccccccchhhhccCceeeeecCCccHHHHHHHHHHHhchHHHHhhcCCCchhh
Confidence 35677888877210 0010 0112358899999999976542 111
Q ss_pred HHHHh----------h-------hhh----------hhhh----------------------hhhhHHHHHHHHhcCCCH
Q 003521 580 TAEVS----------K-------TFN----------EKIR----------------------KYCDMTLLSCAYAGTGNV 610 (813)
Q Consensus 580 ~i~~L----------~-------~~~----------~p~~----------------------r~~~~~~~glAyaGTGn~ 610 (813)
+++.. . .+. ++++ -.|+++++|+=||||||.
T Consensus 1075 ll~~vrPd~l~lR~~a~~lImW~~I~p~~~wv~~~vp~~ir~~~~~~~dvd~~tl~q~~~~~~aGac~slgLrfagt~n~ 1154 (1496)
T KOG1858|consen 1075 LLDFVRPDFLLLRVIARNLIMWDRIKPDYDWVKSQVPDVIREQADLQEDVDLETLSQAYVNILAGACFSLGLRFAGTGNL 1154 (1496)
T ss_pred HHhhcchHHHHHHHHHhhhhHHHhhCchHHHHHhhCCHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhcccCCh
Confidence 01000 0 000 0111 247888999999999997
Q ss_pred HHHHHHHhhhcccC---------CCC----cch---hhHHHHHHHHhhccchhhHHHHHHHHHHHhhc--CChhHHhHHH
Q 003521 611 LKVQNLLGHCAQHH---------EKG----EAY---QGPAVLGIAMVAMAEELGLEMAIRSLEHLLQY--GEQNIRRAVP 672 (813)
Q Consensus 611 ~~iq~LL~~~~~~~---------~d~----~~v---rr~AvlglalI~~~~~~g~e~~~~~l~~L~~~--~~~~VR~g~~ 672 (813)
.+-..|..++.+.. +++ ..+ -+..++++++|+.|.. .-.+.|.++.|-.- ..++++||..
T Consensus 1155 ~aknil~s~v~~fl~l~~~P~~~~~~~~~~~tv~~cl~v~i~sls~vmagSg--dleVlr~~r~Lr~~~~~~~~~~yg~~ 1232 (1496)
T KOG1858|consen 1155 KAKNILNSFVDDFLRLCSLPLKSNDGRVTAVTVERCLSVLIISLSMVMAGSG--DLEVLRRLRFLRSRTSPYGHMNYGAQ 1232 (1496)
T ss_pred hHHHHHHHHHHHHHHHhhccCccCCCcccchhHHHHHHHHHHHHHHHHhhcC--chHHHHHHHHHHHhccCCCcccchhH
Confidence 65554433332111 010 011 1345556666666543 24566665544221 1245666543
Q ss_pred ----HHHhhhccCCCchhHHHHHHHhhcCCchHHHHHHHHHHHHHcC--CCC-chHHHHHHHHHhhhhccChhhHHHHHH
Q 003521 673 ----LALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGS--GTN-NARIAGMLRNLSSYYYKDANLLFCVRI 745 (813)
Q Consensus 673 ----lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~a--Gt~-n~rv~~~Lr~l~~~~~~d~~~~f~~~l 745 (813)
+|+|+++.|.|.. .+++++ -+..|+++-=+... +++ |.-=-|.+|.|..- .-+|-...-.-+
T Consensus 1233 ma~h~alGil~lG~Gr~-------t~s~s~---~sIa~ll~slfp~fP~~~~Dnr~hlqalR~l~~L-a~e~r~lip~di 1301 (1496)
T KOG1858|consen 1233 MATHMALGILFLGGGRY-------TISTSN---LSIAALLISLFPHFPISPSDNRYHLQALRHLYVL-AVEPRLLIPRDI 1301 (1496)
T ss_pred HHHHHhhceeEecCccc-------ccCCCc---HHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHH-hccccccccccc
Confidence 4567766666533 111221 22222222222221 112 33334555554332 123333334457
Q ss_pred HHhhhhcCCCcccccc
Q 003521 746 AQGLVHMGKGLLTLNP 761 (813)
Q Consensus 746 AqGll~~G~g~~tlsp 761 (813)
+.|..|.+-|+++..+
T Consensus 1302 dt~~~~l~~~~v~~k~ 1317 (1496)
T KOG1858|consen 1302 DTGQPCLAPLNVVQKG 1317 (1496)
T ss_pred ccCceEEEeeeEEecc
Confidence 8899999999998766
No 12
>PRK09687 putative lyase; Provisional
Probab=99.12 E-value=1.9e-08 Score=108.97 Aligned_cols=244 Identities=12% Similarity=0.094 Sum_probs=167.7
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHhccCCCCchhHHHHHHHHHhhHhcCCCC---HHHHHHH
Q 003521 466 ALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCN---EEVAQAI 542 (813)
Q Consensus 466 ~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~e~i~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~~---~e~~e~l 542 (813)
....|.++|.+++..+|..|+.+|+.. | .+++...+...+.+. +..+..+|+-+||-+ |... .++...|
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~--~--~~~~~~~l~~ll~~~--d~~vR~~A~~aLg~l--g~~~~~~~~a~~~L 95 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLR--G--GQDVFRLAIELCSSK--NPIERDIGADILSQL--GMAKRCQDNVFNIL 95 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhc--C--cchHHHHHHHHHhCC--CHHHHHHHHHHHHhc--CCCccchHHHHHHH
Confidence 345677888999999999999999863 3 578999999987766 446666889999976 5322 3455555
Q ss_pred HHHHhccCccccCchhHH-HHHHHHHHhhcCChhh-----HHHHHHHhhhhhhhhhhhhhHHHHHHHHhcCCCHHHHHHH
Q 003521 543 IFALMDRSESELGEPLTR-LIPLGLGLLYLGKQES-----VEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNL 616 (813)
Q Consensus 543 l~~L~~~~~~~l~e~~~r-~~~lglgLl~lG~~e~-----~~~~i~~L~~~~~p~~r~~~~~~~glAyaGTGn~~~iq~L 616 (813)
...+.+ + .++.+| .++-+||-+ |.... +-..+..+..++++.+|++++.++ ...|+..++..|
T Consensus 96 ~~l~~~--D---~d~~VR~~A~~aLG~~--~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aL----g~~~~~~ai~~L 164 (280)
T PRK09687 96 NNLALE--D---KSACVRASAINATGHR--CKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFAL----SVINDEAAIPLL 164 (280)
T ss_pred HHHHhc--C---CCHHHHHHHHHHHhcc--cccccccchHHHHHHHHHhhCCCHHHHHHHHHHH----hccCCHHHHHHH
Confidence 544332 1 344555 444466644 43321 112222333456788898777665 355788899999
Q ss_pred HhhhcccCCCCcchhhHHHHHHHHhhccchhhHHHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchhHHHHHHHhhc
Q 003521 617 LGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSH 696 (813)
Q Consensus 617 L~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~~~~aid~L~~l~~ 696 (813)
+....+. +. +||..|+.+||-+..++ +.+...+..++.+.|+.||..+..+||-+ ++.++++.|.+...
T Consensus 165 ~~~L~d~-~~--~VR~~A~~aLg~~~~~~----~~~~~~L~~~L~D~~~~VR~~A~~aLg~~----~~~~av~~Li~~L~ 233 (280)
T PRK09687 165 INLLKDP-NG--DVRNWAAFALNSNKYDN----PDIREAFVAMLQDKNEEIRIEAIIGLALR----KDKRVLSVLIKELK 233 (280)
T ss_pred HHHhcCC-CH--HHHHHHHHHHhcCCCCC----HHHHHHHHHHhcCCChHHHHHHHHHHHcc----CChhHHHHHHHHHc
Confidence 9988643 33 89999999999995545 44556666666889999999999999986 67899999999998
Q ss_pred CCchHHHHHHHHHHHHHcCCCCchHHHHHHHHHhhhhccChhhHHHHHHH
Q 003521 697 DTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIA 746 (813)
Q Consensus 697 D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~Lr~l~~~~~~d~~~~f~~~lA 746 (813)
|++ |+..|+.|+|-++ + ++....|.++... ..|+.++.-++-|
T Consensus 234 ~~~--~~~~a~~ALg~ig--~--~~a~p~L~~l~~~-~~d~~v~~~a~~a 276 (280)
T PRK09687 234 KGT--VGDLIIEAAGELG--D--KTLLPVLDTLLYK-FDDNEIITKAIDK 276 (280)
T ss_pred CCc--hHHHHHHHHHhcC--C--HhHHHHHHHHHhh-CCChhHHHHHHHH
Confidence 876 7888999999884 4 3445555554432 2355555544433
No 13
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.08 E-value=3.5e-08 Score=122.70 Aligned_cols=288 Identities=17% Similarity=0.089 Sum_probs=199.3
Q ss_pred chhhHHHHHHHhhhhcccccchhHHhHhhhhcCCChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcCCCHHHHHHHH
Q 003521 407 KEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAI 486 (813)
Q Consensus 407 ~~~~k~sA~aslGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~~~~v~~gA~ 486 (813)
..|.++.++.++ ..+.+..|..+|.++++.+|..|+.+||-+.. +.+...|...|.+++..+|..|+
T Consensus 607 ~~~~~~~~~~~l-------~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------~~~~~~L~~aL~D~d~~VR~~Aa 673 (897)
T PRK13800 607 PPSPRILAVLAL-------DAPSVAELAPYLADPDPGVRRTAVAVLTETTP------PGFGPALVAALGDGAAAVRRAAA 673 (897)
T ss_pred CchHHHHHHHhc-------cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------hhHHHHHHHHHcCCCHHHHHHHH
Confidence 457888777777 23356778899999999999999999998642 23778888999999999999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHhccCCCCchhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCccccCchhHHHHH-HH
Q 003521 487 MGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIP-LG 565 (813)
Q Consensus 487 lGLGl~y~Gs~~e~i~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~-lg 565 (813)
-+|+-+.-.... ...|...|.++ +.++...|+-+||.+- .++. ..++..|.+ .++..|..+ .+
T Consensus 674 ~aL~~l~~~~~~---~~~L~~~L~~~--d~~VR~~A~~aL~~~~--~~~~---~~l~~~L~D------~d~~VR~~Av~a 737 (897)
T PRK13800 674 EGLRELVEVLPP---APALRDHLGSP--DPVVRAAALDVLRALR--AGDA---ALFAAALGD------PDHRVRIEAVRA 737 (897)
T ss_pred HHHHHHHhccCc---hHHHHHHhcCC--CHHHHHHHHHHHHhhc--cCCH---HHHHHHhcC------CCHHHHHHHHHH
Confidence 999865221111 24555666654 4567667777888763 3332 345554421 234455443 35
Q ss_pred HHHhhcCChhhHHHHHHHhhhhhhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhcccCCCCcchhhHHHHHHHHhhccc
Q 003521 566 LGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAE 645 (813)
Q Consensus 566 lgLl~lG~~e~~~~~i~~L~~~~~p~~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~ 645 (813)
|+ .++. .+.++ .+..++++.+|... +.+++..|++....+..|+.+..+. + +.||..|+-+||-+. .
T Consensus 738 L~--~~~~---~~~l~-~~l~D~~~~VR~~a--a~aL~~~~~~~~~~~~~L~~ll~D~-d--~~VR~aA~~aLg~~g--~ 804 (897)
T PRK13800 738 LV--SVDD---VESVA-GAATDENREVRIAV--AKGLATLGAGGAPAGDAVRALTGDP-D--PLVRAAALAALAELG--C 804 (897)
T ss_pred Hh--cccC---cHHHH-HHhcCCCHHHHHHH--HHHHHHhccccchhHHHHHHHhcCC-C--HHHHHHHHHHHHhcC--C
Confidence 44 3333 33444 44566778888654 4567788888776677777766543 2 389999999999884 3
Q ss_pred hhhHHHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchhHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHH
Q 003521 646 ELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGM 725 (813)
Q Consensus 646 ~~g~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~ 725 (813)
+ +.+...+...+.+.++.||.+++-|||.+ +..++++.|.++..|++..||+.|+-|||-+ ..++.....
T Consensus 805 ~---~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l----~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~---~~~~~a~~~ 874 (897)
T PRK13800 805 P---PDDVAAATAALRASAWQVRQGAARALAGA----AADVAVPALVEALTDPHLDVRKAAVLALTRW---PGDPAARDA 874 (897)
T ss_pred c---chhHHHHHHHhcCCChHHHHHHHHHHHhc----cccchHHHHHHHhcCCCHHHHHHHHHHHhcc---CCCHHHHHH
Confidence 3 33434455566778999999999999977 5678999999999999999999999999986 234555556
Q ss_pred HHHHhhhhccChhhHHHHHHHHh
Q 003521 726 LRNLSSYYYKDANLLFCVRIAQG 748 (813)
Q Consensus 726 Lr~l~~~~~~d~~~~f~~~lAqG 748 (813)
|....+ ..|+.++=.++.|++
T Consensus 875 L~~al~--D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 875 LTTALT--DSDADVRAYARRALA 895 (897)
T ss_pred HHHHHh--CCCHHHHHHHHHHHh
Confidence 655444 357777766666653
No 14
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.78 E-value=7.6e-07 Score=110.98 Aligned_cols=263 Identities=19% Similarity=0.123 Sum_probs=181.6
Q ss_pred ccccchhhHHHHHHHhhhhcccccchhHHhHhhhhcCCChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcCCCHHHH
Q 003521 403 LFKNKEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIR 482 (813)
Q Consensus 403 l~k~~~~~k~sA~aslGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~~~~v~ 482 (813)
|.......+..|+.+||-+. + .+++..|...|.+++..+|..|+.+|+-+.... +....|...|.++++.+|
T Consensus 630 L~D~d~~VR~~Av~~L~~~~--~-~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~-----~~~~~L~~~L~~~d~~VR 701 (897)
T PRK13800 630 LADPDPGVRRTAVAVLTETT--P-PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL-----PPAPALRDHLGSPDPVVR 701 (897)
T ss_pred hcCCCHHHHHHHHHHHhhhc--c-hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-----CchHHHHHHhcCCCHHHH
Confidence 33455688999999998764 2 345677778888899999999999998774221 122456677888899999
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHhccCCCCchhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCccccCchhHHH-
Q 003521 483 IGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRL- 561 (813)
Q Consensus 483 ~gA~lGLGl~y~Gs~~e~i~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r~- 561 (813)
..|+-.||....+. . ..|...|.|+ +.++...|+-+||-+ +. . +.++..+.+ .++.+|.
T Consensus 702 ~~A~~aL~~~~~~~--~---~~l~~~L~D~--d~~VR~~Av~aL~~~--~~--~---~~l~~~l~D------~~~~VR~~ 761 (897)
T PRK13800 702 AAALDVLRALRAGD--A---ALFAAALGDP--DHRVRIEAVRALVSV--DD--V---ESVAGAATD------ENREVRIA 761 (897)
T ss_pred HHHHHHHHhhccCC--H---HHHHHHhcCC--CHHHHHHHHHHHhcc--cC--c---HHHHHHhcC------CCHHHHHH
Confidence 99999999865432 2 3556667776 456667888898865 32 2 344444321 1234444
Q ss_pred HHHHHHHhhcCChhh--HHHHHHHhhhhhhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhcccCCCCcchhhHHHHHHH
Q 003521 562 IPLGLGLLYLGKQES--VEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIA 639 (813)
Q Consensus 562 ~~lglgLl~lG~~e~--~~~~i~~L~~~~~p~~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~Avlgla 639 (813)
++-+| ..+|..+. .+.+. .+..+++|.+|..++-+ ++-.|... ..+..+++...+ .+. .||+.|+-+||
T Consensus 762 aa~aL--~~~~~~~~~~~~~L~-~ll~D~d~~VR~aA~~a--Lg~~g~~~-~~~~~l~~aL~d-~d~--~VR~~Aa~aL~ 832 (897)
T PRK13800 762 VAKGL--ATLGAGGAPAGDAVR-ALTGDPDPLVRAAALAA--LAELGCPP-DDVAAATAALRA-SAW--QVRQGAARALA 832 (897)
T ss_pred HHHHH--HHhccccchhHHHHH-HHhcCCCHHHHHHHHHH--HHhcCCcc-hhHHHHHHHhcC-CCh--HHHHHHHHHHH
Confidence 44444 45555543 34544 55566789999876554 44444432 233556665543 232 79999999999
Q ss_pred HhhccchhhHHHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchhHHHHHHHhhcCCchHHHHHHHHHHH
Q 003521 640 MVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLG 711 (813)
Q Consensus 640 lI~~~~~~g~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~~AiiAlG 711 (813)
.+. . +.+...+..++.+.++.||..++.|||-+ .+++.+.+.|.+..+|.|.+||+.|..||.
T Consensus 833 ~l~--~----~~a~~~L~~~L~D~~~~VR~~A~~aL~~~---~~~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 833 GAA--A----DVAVPALVEALTDPHLDVRKAAVLALTRW---PGDPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred hcc--c----cchHHHHHHHhcCCCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 873 2 34557777777899999999999999986 357789999999999999999999999886
No 15
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.30 E-value=7.8e-05 Score=84.93 Aligned_cols=221 Identities=14% Similarity=0.089 Sum_probs=141.4
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 003521 449 LLGVGIVNCGIRNDCDPALALLSEYVG-REDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLG 527 (813)
Q Consensus 449 llaLGli~~g~~~e~d~~~~lL~~~L~-~~~~~v~~gA~lGLGl~y~Gs~~e~i~e~L~~~L~d~~~~~e~~~~AaLaLG 527 (813)
+-||.++.. . +...|.+.|. +++..++..++++|+- ..+..+++.|...+.|. +..+...++-+||
T Consensus 45 LdgL~~~G~----~---a~~~L~~aL~~d~~~ev~~~aa~al~~----~~~~~~~~~L~~~L~d~--~~~vr~aaa~ALg 111 (410)
T TIGR02270 45 VDGLVLAGK----A---ATELLVSALAEADEPGRVACAALALLA----QEDALDLRSVLAVLQAG--PEGLCAGIQAALG 111 (410)
T ss_pred HHHHHHhhH----h---HHHHHHHHHhhCCChhHHHHHHHHHhc----cCChHHHHHHHHHhcCC--CHHHHHHHHHHHh
Confidence 666666541 2 6777888884 5556666677777652 33445688888888765 3346667888999
Q ss_pred hHhcCCCCHHHHHHHHHHHhccCccccCchhHHHHHHHHHHhhcCChhhHHHHHHHhhhhhhhhhhhhhHHHHHHHHhcC
Q 003521 528 LIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGT 607 (813)
Q Consensus 528 Li~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~lG~~e~~~~~i~~L~~~~~p~~r~~~~~~~glAyaGT 607 (813)
.+ ++.++...++..|.. .++..|.+++ +.+...+.+..+.++..|. +.+|.+|..++-+ +++.|.
T Consensus 112 ~i----~~~~a~~~L~~~L~~------~~p~vR~aal--~al~~r~~~~~~~L~~~L~-d~d~~Vra~A~ra--LG~l~~ 176 (410)
T TIGR02270 112 WL----GGRQAEPWLEPLLAA------SEPPGRAIGL--AALGAHRHDPGPALEAALT-HEDALVRAAALRA--LGELPR 176 (410)
T ss_pred cC----CchHHHHHHHHHhcC------CChHHHHHHH--HHHHhhccChHHHHHHHhc-CCCHHHHHHHHHH--HHhhcc
Confidence 77 677787777776521 3556676555 3333333445566666665 6778888765544 455665
Q ss_pred CCHHHHHHHHhhhcccCCCCcchhhHHHHHHHHhhccchhhHHHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchhH
Q 003521 608 GNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNV 687 (813)
Q Consensus 608 Gn~~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~~~~a 687 (813)
.+ .+..|.... .+.+. .||++|+-|++.+ |.+ .+...+..+....++..+.....++++. +..++
T Consensus 177 ~~--a~~~L~~al-~d~~~--~VR~aA~~al~~l--G~~----~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~~~a 241 (410)
T TIGR02270 177 RL--SESTLRLYL-RDSDP--EVRFAALEAGLLA--GSR----LAWGVCRRFQVLEGGPHRQRLLVLLAVA----GGPDA 241 (410)
T ss_pred cc--chHHHHHHH-cCCCH--HHHHHHHHHHHHc--CCH----hHHHHHHHHHhccCccHHHHHHHHHHhC----CchhH
Confidence 43 445555443 33333 8999999998877 444 3334444433334455555555555554 66699
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHc
Q 003521 688 MDTLSRLSHDTDSEVAMAAVISLGLIG 714 (813)
Q Consensus 688 id~L~~l~~D~d~~Vr~~AiiAlGlV~ 714 (813)
++.|..+++|+. ||..++.++|.++
T Consensus 242 ~~~L~~ll~d~~--vr~~a~~AlG~lg 266 (410)
T TIGR02270 242 QAWLRELLQAAA--TRREALRAVGLVG 266 (410)
T ss_pred HHHHHHHhcChh--hHHHHHHHHHHcC
Confidence 999999999976 9999999999774
No 16
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.24 E-value=0.00036 Score=77.09 Aligned_cols=215 Identities=20% Similarity=0.213 Sum_probs=132.3
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHhccCCCCchhHHHHHHHHHhhHhcCCCCHHHHHHHHHH
Q 003521 466 ALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFA 545 (813)
Q Consensus 466 ~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~e~i~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~ 545 (813)
....+...+.+++..+|+.|...+|. ...++.+..|...+.|. +..+...|+.+||-+ ++++.+..++..
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~----~~~~~av~~l~~~l~d~--~~~vr~~a~~aLg~~----~~~~a~~~li~~ 113 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGE----LGSEEAVPLLRELLSDE--DPRVRDAAADALGEL----GDPEAVPPLVEL 113 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhh----hchHHHHHHHHHHhcCC--CHHHHHHHHHHHHcc----CChhHHHHHHHH
Confidence 34445555555566666666666554 23456666666666654 224445566666655 556666666665
Q ss_pred HhccCccccCchhHHHHHHHHHHhhcCChhhHHHHHHHhhhhh---------hh--hhhhhhHHHHHHHHhcCCCHHHHH
Q 003521 546 LMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFN---------EK--IRKYCDMTLLSCAYAGTGNVLKVQ 614 (813)
Q Consensus 546 L~~~~~~~l~e~~~r~~~lglgLl~lG~~e~~~~~i~~L~~~~---------~p--~~r~~~~~~~glAyaGTGn~~~iq 614 (813)
+.. . .+..+|..+ +.+|..+|.+..++++++.+.... .+ ..|..++ -+....|+...+.
T Consensus 114 l~~----d-~~~~vR~~a-a~aL~~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~----~~l~~~~~~~~~~ 183 (335)
T COG1413 114 LEN----D-ENEGVRAAA-ARALGKLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAA----EALGELGDPEAIP 183 (335)
T ss_pred HHc----C-CcHhHHHHH-HHHHHhcCchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHH----HHHHHcCChhhhH
Confidence 532 1 122333221 333445555555666666665433 11 1233222 2334456666777
Q ss_pred HHHhhhcccCCCCcchhhHHHHHHHHhhccchhhHHHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchhHHHHHHHh
Q 003521 615 NLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRL 694 (813)
Q Consensus 615 ~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~~~~aid~L~~l 694 (813)
.+...+.+.. . +||+.|..+++.+.... ..+...|....++.+..+|..+..++|-. +..++.+.|...
T Consensus 184 ~l~~~l~~~~-~--~vr~~Aa~aL~~~~~~~----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~----~~~~~~~~l~~~ 252 (335)
T COG1413 184 LLIELLEDED-A--DVRRAAASALGQLGSEN----VEAADLLVKALSDESLEVRKAALLALGEI----GDEEAVDALAKA 252 (335)
T ss_pred HHHHHHhCch-H--HHHHHHHHHHHHhhcch----hhHHHHHHHHhcCCCHHHHHHHHHHhccc----CcchhHHHHHHH
Confidence 6666664432 2 78999999999886543 24556667777778899999999999988 778888888888
Q ss_pred hcCCchHHHHHHHHHHH
Q 003521 695 SHDTDSEVAMAAVISLG 711 (813)
Q Consensus 695 ~~D~d~~Vr~~AiiAlG 711 (813)
..+.+..++..+..+++
T Consensus 253 l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 253 LEDEDVILALLAAAALG 269 (335)
T ss_pred HhccchHHHHHHHHHhc
Confidence 88888888887777777
No 17
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.18 E-value=0.00022 Score=81.32 Aligned_cols=221 Identities=17% Similarity=0.112 Sum_probs=147.2
Q ss_pred HHHHHHHhccCCCHHHHHHHHHhcc-CCCCchhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCccccCchhHHHHHH
Q 003521 486 IMGLGISYAGTQNDQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPL 564 (813)
Q Consensus 486 ~lGLGl~y~Gs~~e~i~e~L~~~L~-d~~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~l 564 (813)
+=||.. +| +...+.|.+.+. |. ..++...++++++ +..+..+++.++..|-+. .+.+.+.++-
T Consensus 45 LdgL~~--~G---~~a~~~L~~aL~~d~--~~ev~~~aa~al~----~~~~~~~~~~L~~~L~d~-----~~~vr~aaa~ 108 (410)
T TIGR02270 45 VDGLVL--AG---KAATELLVSALAEAD--EPGRVACAALALL----AQEDALDLRSVLAVLQAG-----PEGLCAGIQA 108 (410)
T ss_pred HHHHHH--hh---HhHHHHHHHHHhhCC--ChhHHHHHHHHHh----ccCChHHHHHHHHHhcCC-----CHHHHHHHHH
Confidence 455555 45 578899999995 43 3566445556654 234455688888877331 2335555555
Q ss_pred HHHHhhcCChhhHHHHHHHhhhhhhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhcccCCCCcchhhHHHHHHHHhhcc
Q 003521 565 GLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMA 644 (813)
Q Consensus 565 glgLl~lG~~e~~~~~i~~L~~~~~p~~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~ 644 (813)
+|| -+|.......++..|. .++|..|..+. .+|+.-+-. ....++.... |.+ +.||+.|+-++|.+.-.
T Consensus 109 ALg--~i~~~~a~~~L~~~L~-~~~p~vR~aal--~al~~r~~~---~~~~L~~~L~-d~d--~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 109 ALG--WLGGRQAEPWLEPLLA-ASEPPGRAIGL--AALGAHRHD---PGPALEAALT-HED--ALVRAAALRALGELPRR 177 (410)
T ss_pred HHh--cCCchHHHHHHHHHhc-CCChHHHHHHH--HHHHhhccC---hHHHHHHHhc-CCC--HHHHHHHHHHHHhhccc
Confidence 555 5667777777777774 57888888665 444444432 2334444443 333 38999999999998532
Q ss_pred chhhHHHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchhHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHH
Q 003521 645 EELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAG 724 (813)
Q Consensus 645 ~~~g~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~ 724 (813)
+.+ ..+.....+.||.||+++.-+++.+ |...+.+.|..+..+++..+++.+..++++. |. +++..
T Consensus 178 -----~a~-~~L~~al~d~~~~VR~aA~~al~~l----G~~~A~~~l~~~~~~~g~~~~~~l~~~lal~--~~--~~a~~ 243 (410)
T TIGR02270 178 -----LSE-STLRLYLRDSDPEVRFAALEAGLLA----GSRLAWGVCRRFQVLEGGPHRQRLLVLLAVA--GG--PDAQA 243 (410)
T ss_pred -----cch-HHHHHHHcCCCHHHHHHHHHHHHHc----CCHhHHHHHHHHHhccCccHHHHHHHHHHhC--Cc--hhHHH
Confidence 223 3445668889999999999999988 5578899999988888888877666666555 43 46666
Q ss_pred HHHHHhhhhccChhhHHHHHHHHhhhh
Q 003521 725 MLRNLSSYYYKDANLLFCVRIAQGLVH 751 (813)
Q Consensus 725 ~Lr~l~~~~~~d~~~~f~~~lAqGll~ 751 (813)
.|+++.. |+.++..+..|.|.+.
T Consensus 244 ~L~~ll~----d~~vr~~a~~AlG~lg 266 (410)
T TIGR02270 244 WLRELLQ----AAATRREALRAVGLVG 266 (410)
T ss_pred HHHHHhc----ChhhHHHHHHHHHHcC
Confidence 6666554 5668888888888553
No 18
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.031 Score=69.13 Aligned_cols=423 Identities=18% Similarity=0.241 Sum_probs=207.2
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHhcCCCcchHHHHHHHHHHHHhhc
Q 003521 46 QQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTM 125 (813)
Q Consensus 46 ~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye~~~~~~~k~~~AdilS~l~~t~ 125 (813)
..|+.|+..|.-+|.++++.|=+.|.++-++.. -.+.|..+--...+|+.|+++|=.+-++..++
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~---------------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~ 68 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLAKTEP---------------LLPALAHILATSADPQVRQLAAVLLRKLLTKH 68 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhhcccc---------------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999998888773 24577777777888888999888888887442
Q ss_pred cccccccchhhhhcCCCCCCCCcccHHHHHHHHHHHHHHHHhccCccCH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHhc
Q 003521 126 SAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASI-DDLMELVQEIVAFHMKHNAEPEAVDLLMEV 204 (813)
Q Consensus 126 ~~~~~~~~L~y~L~~~~~d~~~wgheYvr~l~~~i~~~y~~~~~~~~~~-~~L~~lv~~iv~~~l~~n~e~eAvdlalE~ 204 (813)
.. .+. .|=-.+|-+.+.+..+ ++.+..+ ..+..++.++...-+.. .++|-+-++..+
T Consensus 69 w~----------------~l~---~e~~~siks~lL~~~~--~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~ 126 (1075)
T KOG2171|consen 69 WS----------------RLS---AEVQQSIKSSLLEIIQ--SETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQS 126 (1075)
T ss_pred hh----------------cCC---HHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHH
Confidence 10 111 1222223333333332 2223334 46778888887777755 677777766543
Q ss_pred CChhhhHHHhhccChHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHc---cCCHHHHHHHH-HhCCChHHHHHHHHhc-c
Q 003521 205 EDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLK---FEEFPNALQIA-LFLDNMQYVKQIFTSC-D 279 (813)
Q Consensus 205 ~~ld~i~~~vd~~~~~rv~~Yl~~~~~~~~~p~~~~vl~~~~~iy~~---~~~~~~al~~a-l~l~d~~~i~~i~~~~-~ 279 (813)
=.-. ..+...+-.++++.++......+...++.+..+|.+ -+.-+ ++++ ++ .+..++..+ +
T Consensus 127 ~~S~-------~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~--vr~~a~r-----A~~a~~~~~~~ 192 (1075)
T KOG2171|consen 127 TKSP-------NPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSP--VRVAAVR-----ALGAFAEYLEN 192 (1075)
T ss_pred hcCC-------CcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcch--HHHHHHH-----HHHHHHHHhcc
Confidence 2100 133455666666666666555554334444444433 11111 1110 00 000111111 1
Q ss_pred hHHHHHHHHHHHHh-hcccccccCCCCCCcc----hHHHHHHHHcccC--cchhHHHHHHHhhccCCCChHHHHHhhhcc
Q 003521 280 DLLRKKQFCYILAR-HGITLELDDDMVPDDD----DRYALQDIVNNVK--LSEGYLTLARDIEVMEPKSPEDIYKAHLLD 352 (813)
Q Consensus 280 d~~~~~Qlaf~lar-q~~~~~~~~~~~~~~~----~~~~l~~il~n~~--l~~~~~~~~~~l~i~~~k~~e~iyK~~l~~ 352 (813)
|+....+++=.|=+ -+++.++.+. .|++ .-+.+.+++.... +..++ ++|.+--+.=
T Consensus 193 ~~~~~~~~~~llP~~l~vl~~~i~~--~d~~~a~~~l~~l~El~e~~pk~l~~~l---------------~~ii~~~l~I 255 (1075)
T KOG2171|consen 193 NKSEVDKFRDLLPSLLNVLQEVIQD--GDDDAAKSALEALIELLESEPKLLRPHL---------------SQIIQFSLEI 255 (1075)
T ss_pred chHHHHHHHHHhHHHHHHhHhhhhc--cchHHHHHHHHHHHHHHhhchHHHHHHH---------------HHHHHHHHHH
Confidence 22222222211110 0111111000 0000 0122223222221 11111 1111111110
Q ss_pred CCCCcCcchh-HHHHhHHHHHHHHHHhcccCC---------------ccccccCCCCCCCCCCCccccccc------hhh
Q 003521 353 GRASAGASVD-SARQNLAATFVNAFVNAGFGQ---------------DKLMTVPSDASSGGSSGNWLFKNK------EHG 410 (813)
Q Consensus 353 ~r~~~~~~~d-sa~~~la~~~~na~vnaG~~~---------------D~~l~~~~~~~~~~~~~~wl~k~~------~~~ 410 (813)
-++ ..+| ++| ++|.-|.-.++-..-.. =+.|++..+ ++.|..... +-.
T Consensus 256 a~n---~~l~~~~R-~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~------D~ew~~~d~~ded~~~~~ 325 (1075)
T KOG2171|consen 256 AKN---KELENSIR-HLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEED------DDEWSNEDDLDEDDEETP 325 (1075)
T ss_pred hhc---ccccHHHH-HHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCccc------chhhccccccccccccCc
Confidence 000 0112 222 22332222222221100 012333332 345665221 112
Q ss_pred HHHHHHHhhh--hccc-c--cchhHHhHhhhhcCCChhhHHHHHHHHHHhhcCCCCC----hhhHHHHHHHhhcCCCHHH
Q 003521 411 KMSAAASLGM--ILLW-D--VDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRND----CDPALALLSEYVGREDACI 481 (813)
Q Consensus 411 k~sA~aslGl--I~~~-~--~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e----~d~~~~lL~~~L~~~~~~v 481 (813)
.-.|.-++-. .|+| . .-+.++.+..++.|++-.-|..|++|||.+.-|..+- -++++....+.|.++++.|
T Consensus 326 ~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprV 405 (1075)
T KOG2171|consen 326 YRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRV 405 (1075)
T ss_pred HHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHH
Confidence 2233333322 2333 1 1235677788888999999999999999999987543 2456777778889999999
Q ss_pred HHHHHHHHHHHhccCCC-------HHHHHHHHHhccCCCCchhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhc
Q 003521 482 RIGAIMGLGISYAGTQN-------DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMD 548 (813)
Q Consensus 482 ~~gA~lGLGl~y~Gs~~-------e~i~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~ 548 (813)
|.+|+.++|-....-.. +.+...|...+.++ .+.+++..||-|+=- |.--|..++++.-+.-||+
T Consensus 406 r~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~-~~~rV~ahAa~al~n-f~E~~~~~~l~pYLd~lm~ 477 (1075)
T KOG2171|consen 406 RYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDST-QNVRVQAHAAAALVN-FSEECDKSILEPYLDGLME 477 (1075)
T ss_pred HHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhccc-CchHHHHHHHHHHHH-HHHhCcHHHHHHHHHHHHH
Confidence 99999999986443221 22333444444333 344554444444322 2333555666655555544
No 19
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.84 E-value=0.013 Score=64.70 Aligned_cols=263 Identities=22% Similarity=0.214 Sum_probs=180.6
Q ss_pred hHHhHhhhhcCCChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHh
Q 003521 429 GLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTI 508 (813)
Q Consensus 429 ~l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~e~i~e~L~~~ 508 (813)
+...+.+++.+.+..+|.+|...+|.+.. ..++..|...+.+.+..+|..|+.+||- .++++.+..|.+.
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~------~~av~~l~~~l~d~~~~vr~~a~~aLg~----~~~~~a~~~li~~ 113 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGS------EEAVPLLRELLSDEDPRVRDAAADALGE----LGDPEAVPPLVEL 113 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhch------HHHHHHHHHHhcCCCHHHHHHHHHHHHc----cCChhHHHHHHHH
Confidence 45556667777789999999999887643 2388889999999999999999998885 3567888888888
Q ss_pred cc-CCCCchhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCc------cccCchhHHHHHHHHHHhhcCChhhHHHHH
Q 003521 509 LN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSE------SELGEPLTRLIPLGLGLLYLGKQESVEATA 581 (813)
Q Consensus 509 L~-d~~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~------~~l~e~~~r~~~lglgLl~lG~~e~~~~~i 581 (813)
+. |. +.-+...|+.+||-+ ++...+..++..+.+... -.......|+. ..-+|.-+|.++....++
T Consensus 114 l~~d~--~~~vR~~aa~aL~~~----~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~-a~~~l~~~~~~~~~~~l~ 186 (335)
T COG1413 114 LENDE--NEGVRAAAARALGKL----GDERALDPLLEALQDEDSGSAAAALDAALLDVRAA-AAEALGELGDPEAIPLLI 186 (335)
T ss_pred HHcCC--cHhHHHHHHHHHHhc----CchhhhHHHHHHhccchhhhhhhhccchHHHHHHH-HHHHHHHcCChhhhHHHH
Confidence 87 44 445566888999977 666777888877643210 00001123332 344666778888888888
Q ss_pred HHhhhhhhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhcccCCCCcchhhHHHHHHHHhhccchhhHHHHHHHHHHHhh
Q 003521 582 EVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQ 661 (813)
Q Consensus 582 ~~L~~~~~p~~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e~~~~~l~~L~~ 661 (813)
+.+... ++.+|..++ .++...|..+...+..+.... ++.+. .+|..++.++|-+.+ +.....+-...+
T Consensus 187 ~~l~~~-~~~vr~~Aa--~aL~~~~~~~~~~~~~l~~~~-~~~~~--~vr~~~~~~l~~~~~------~~~~~~l~~~l~ 254 (335)
T COG1413 187 ELLEDE-DADVRRAAA--SALGQLGSENVEAADLLVKAL-SDESL--EVRKAALLALGEIGD------EEAVDALAKALE 254 (335)
T ss_pred HHHhCc-hHHHHHHHH--HHHHHhhcchhhHHHHHHHHh-cCCCH--HHHHHHHHHhcccCc------chhHHHHHHHHh
Confidence 887654 335565444 445555655544445444444 44443 789999998888754 455677777788
Q ss_pred cCChhHHhHHHHHHhhhccCCCchhHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHH
Q 003521 662 YGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGML 726 (813)
Q Consensus 662 ~~~~~VR~g~~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~L 726 (813)
..++.+|.....+++ +.......-.+....+|....++..+..+++.++ +.+.+.+.+.
T Consensus 255 ~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~a~~~ 313 (335)
T COG1413 255 DEDVILALLAAAALG----ALDLAEAALPLLLLLIDEANAVRLEAALALGQIG--QEKAVAALLL 313 (335)
T ss_pred ccchHHHHHHHHHhc----ccCchhhHHHHHHHhhcchhhHHHHHHHHHHhhc--ccchHHHHHH
Confidence 889999998888888 3345555566777788888889988888888874 4444433333
No 20
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=97.71 E-value=4.7e-05 Score=56.39 Aligned_cols=35 Identities=29% Similarity=0.385 Sum_probs=30.9
Q ss_pred HHHHHHhhhccCCCchhHHHHHHHhhcCCchHHHH
Q 003521 670 AVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAM 704 (813)
Q Consensus 670 g~~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~ 704 (813)
|++++||++|||+++.++++.|.++.+|++..++|
T Consensus 1 gA~lgLGl~~aGs~~~~~~~~L~~~l~~~~~~~~~ 35 (35)
T PF01851_consen 1 GAILGLGLIYAGSGNEEVLDLLRPYLSDTSNEMIQ 35 (35)
T ss_dssp HHHHHHHHHTTTT--HHHHHHHHHHHCTSSHHHHH
T ss_pred CcHHHHHHHHcCCCCHHHHHHHHHHHHhccccccC
Confidence 68999999999999999999999999999988875
No 21
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=97.71 E-value=3.8e-05 Score=56.88 Aligned_cols=30 Identities=43% Similarity=0.802 Sum_probs=25.7
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHhccCCC
Q 003521 484 GAIMGLGISYAGTQNDQIRHKLSTILNDAK 513 (813)
Q Consensus 484 gA~lGLGl~y~Gs~~e~i~e~L~~~L~d~~ 513 (813)
||++|||++|+||+++++++.|.|.+.|++
T Consensus 1 gA~lgLGl~~aGs~~~~~~~~L~~~l~~~~ 30 (35)
T PF01851_consen 1 GAILGLGLIYAGSGNEEVLDLLRPYLSDTS 30 (35)
T ss_dssp HHHHHHHHHTTTT--HHHHHHHHHHHCTSS
T ss_pred CcHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 799999999999999999999999998763
No 22
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.67 E-value=0.0002 Score=62.94 Aligned_cols=86 Identities=27% Similarity=0.319 Sum_probs=52.6
Q ss_pred HHHHhhhcccCCCCcchhhHHHHHHHHhhccchhhHHHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchhHHHHHHH
Q 003521 614 QNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSR 693 (813)
Q Consensus 614 q~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~~~~aid~L~~ 693 (813)
..|++.+.++.+. .+|..++-.+|-+ ++ +.+...+..++.+.||.||+.++.|||-+ |+.++++.|.+
T Consensus 2 ~~L~~~l~~~~~~--~vr~~a~~~L~~~--~~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~~~~~~~~L~~ 69 (88)
T PF13646_consen 2 PALLQLLQNDPDP--QVRAEAARALGEL--GD----PEAIPALIELLKDEDPMVRRAAARALGRI----GDPEAIPALIK 69 (88)
T ss_dssp HHHHHHHHTSSSH--HHHHHHHHHHHCC--TH----HHHHHHHHHHHTSSSHHHHHHHHHHHHCC----HHHHTHHHHHH
T ss_pred HHHHHHHhcCCCH--HHHHHHHHHHHHc--CC----HhHHHHHHHHHcCCCHHHHHHHHHHHHHh----CCHHHHHHHHH
Confidence 3455555333333 6777777766632 23 34444444455677778888888888766 46777777776
Q ss_pred hhcC-CchHHHHHHHHHHH
Q 003521 694 LSHD-TDSEVAMAAVISLG 711 (813)
Q Consensus 694 l~~D-~d~~Vr~~AiiAlG 711 (813)
+..| .+..||..|+-|||
T Consensus 70 ~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 70 LLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTC-SSHHHHHHHHHHHH
T ss_pred HHcCCCcHHHHHHHHhhcC
Confidence 5544 45556777777765
No 23
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.46 E-value=0.00079 Score=59.12 Aligned_cols=87 Identities=26% Similarity=0.225 Sum_probs=67.2
Q ss_pred HHHHHHHhhcCChhHHhHHHHHHhhhccCCCchhHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHHhhh
Q 003521 653 IRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSY 732 (813)
Q Consensus 653 ~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~Lr~l~~~ 732 (813)
+.++..|.++.++.||..++.+||-. ++.++++.|..+.+|++..||+.|+.++|-++ +++....|.++...
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~----~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----~~~~~~~L~~~l~~ 73 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGEL----GDPEAIPALIELLKDEDPMVRRAAARALGRIG----DPEAIPALIKLLQD 73 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCC----THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----HHHTHHHHHHHHTC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc----CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----CHHHHHHHHHHHcC
Confidence 45677787899999999999999954 78899999999999999999999999999874 45555555553332
Q ss_pred hccChhhHHHHHHHHh
Q 003521 733 YYKDANLLFCVRIAQG 748 (813)
Q Consensus 733 ~~~d~~~~f~~~lAqG 748 (813)
..+...+..+.-|+|
T Consensus 74 -~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 74 -DDDEVVREAAAEALG 88 (88)
T ss_dssp --SSHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHhhcC
Confidence 234445666666665
No 24
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.46 E-value=0.025 Score=60.06 Aligned_cols=239 Identities=15% Similarity=0.158 Sum_probs=130.1
Q ss_pred HHhHhhhhcCCChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcCC--CHHHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 003521 430 LAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRE--DACIRIGAIMGLGISYAGTQNDQIRHKLST 507 (813)
Q Consensus 430 l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~--~~~v~~gA~lGLGl~y~Gs~~e~i~e~L~~ 507 (813)
+..+.+..-.++.--+.-..+.||-... + .++..|.+.+.+. .+.+||.|.-+||-+. +.++.+.|..
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~~----~--~Av~~l~~vl~desq~pmvRhEAaealga~~----~~~~~~~l~k 107 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQD----E--DAVPVLVEVLLDESQEPMVRHEAAEALGAIG----DPESLEILTK 107 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhcc----c--hhhHHHHHHhcccccchHHHHHHHHHHHhhc----chhhHHHHHH
Confidence 4444444334444455555666664321 1 2666666666543 3677777877777643 5567777776
Q ss_pred hccCCCCchhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCccccCchhHHHHHHHHHHhhcCChhhHHHHHHH-hhh
Q 003521 508 ILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEV-SKT 586 (813)
Q Consensus 508 ~L~d~~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~lG~~e~~~~~i~~-L~~ 586 (813)
...|+ ..++.-..-+|+.-+--+.+..... ....+ ...++. .+ ...+ .+..+=.. +..
T Consensus 108 ~~~dp--~~~v~ETc~lAi~rle~~~~~~~~~-~~~p~-~SvdPa------~p--------~~~s---sv~~lr~~lld~ 166 (289)
T KOG0567|consen 108 YIKDP--CKEVRETCELAIKRLEWKDIIDKIA-NSSPY-ISVDPA------PP--------ANLS---SVHELRAELLDE 166 (289)
T ss_pred HhcCC--ccccchHHHHHHHHHHHhhcccccc-ccCcc-ccCCCC------Cc--------cccc---cHHHHHHHHHhc
Confidence 66554 2333223455666552221111100 00000 000111 00 0000 11111111 222
Q ss_pred hhhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhcccCCCCcchhhHHHHHHHHhhccchhhHHHHHHHHHHHhhc-CCh
Q 003521 587 FNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQY-GEQ 665 (813)
Q Consensus 587 ~~~p~~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e~~~~~l~~L~~~-~~~ 665 (813)
.++-+-||.+++.+ ---|...+|..|.+-...+ +- -.|--+...+|-+ +.| ..++.+.+.|... .+|
T Consensus 167 t~~l~~Ry~amF~L----Rn~g~EeaI~al~~~l~~~-Sa--lfrhEvAfVfGQl--~s~---~ai~~L~k~L~d~~E~p 234 (289)
T KOG0567|consen 167 TKPLFERYRAMFYL----RNIGTEEAINALIDGLADD-SA--LFRHEVAFVFGQL--QSP---AAIPSLIKVLLDETEHP 234 (289)
T ss_pred chhHHHHHhhhhHh----hccCcHHHHHHHHHhcccc-hH--HHHHHHHHHHhhc--cch---hhhHHHHHHHHhhhcch
Confidence 33445566555432 4456666777666544322 11 3343344444433 444 5566666666543 479
Q ss_pred hHHhHHHHHHhhhccCCCchhHHHHHHHhhcCCchHHHHHHHHHHHHHcC
Q 003521 666 NIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGS 715 (813)
Q Consensus 666 ~VR~g~~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~a 715 (813)
-||.-++.|||-+ ++.++++.|..+++|+++-||..+.+|+-+.--
T Consensus 235 MVRhEaAeALGaI----a~e~~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 235 MVRHEAAEALGAI----ADEDCVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred HHHHHHHHHHHhh----cCHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999988 899999999999999999999999999988643
No 25
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.033 Score=64.59 Aligned_cols=241 Identities=16% Similarity=0.199 Sum_probs=161.5
Q ss_pred HHHHHhhc-CCCHHHHHHHHHHHHHHhccCCCH-------HHHHHHHHhccCCCCchhHHHHHHHHHhhHhcCCCCH---
Q 003521 468 ALLSEYVG-REDACIRIGAIMGLGISYAGTQND-------QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNE--- 536 (813)
Q Consensus 468 ~lL~~~L~-~~~~~v~~gA~lGLGl~y~Gs~~e-------~i~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~~~--- 536 (813)
..|.+.+. +.++.++.-|+-+|-=+..||... ..+-.+..++.++ +.+++..|..|||-| .|-+..
T Consensus 112 ~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~--~~~v~eQavWALgNI-agds~~~Rd 188 (514)
T KOG0166|consen 112 PRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSP--SADVREQAVWALGNI-AGDSPDCRD 188 (514)
T ss_pred HHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCC--cHHHHHHHHHHHhcc-ccCChHHHH
Confidence 34455554 455788999999988888887643 1334455566544 456677899999987 444321
Q ss_pred -----HHHHHHHHHHhccCccccCchhHHHHHHHHHHhhcCCh-----hhHHHHHHHhh---hhhhhhhhhhhHHHHHHH
Q 003521 537 -----EVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQ-----ESVEATAEVSK---TFNEKIRKYCDMTLLSCA 603 (813)
Q Consensus 537 -----e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~lG~~-----e~~~~~i~~L~---~~~~p~~r~~~~~~~glA 603 (813)
.+.+.++..+.. +. ...+.|-+.+.+.-++-|+. +.+..++..|. ...|+.+.. -...+++
T Consensus 189 ~vl~~g~l~pLl~~l~~--~~--~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~--Da~WAls 262 (514)
T KOG0166|consen 189 YVLSCGALDPLLRLLNK--SD--KLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLT--DACWALS 262 (514)
T ss_pred HHHhhcchHHHHHHhcc--cc--chHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHH--HHHHHHH
Confidence 244555554421 11 23588999999999999986 45555555543 445666553 3345678
Q ss_pred HhcCCCHHHHHHHHhhhc--------ccCCCCcchhhHHHHHHHHhhccchhhHHH-----HHHHHHHHhh-cCChhHHh
Q 003521 604 YAGTGNVLKVQNLLGHCA--------QHHEKGEAYQGPAVLGIAMVAMAEELGLEM-----AIRSLEHLLQ-YGEQNIRR 669 (813)
Q Consensus 604 yaGTGn~~~iq~LL~~~~--------~~~~d~~~vrr~AvlglalI~~~~~~g~e~-----~~~~l~~L~~-~~~~~VR~ 669 (813)
|.-=|.++.||.++...+ .+.+. .++-.|+-++|=|..|++.-.+. +...|..|+. ++..+||.
T Consensus 263 yLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~--~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikk 340 (514)
T KOG0166|consen 263 YLTDGSNEKIQMVIDAGVVPRLVDLLGHSSP--KVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKK 340 (514)
T ss_pred HHhcCChHHHHHHHHccchHHHHHHHcCCCc--ccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHH
Confidence 888888888876543222 33333 67888999999999999832111 3344555554 77888999
Q ss_pred HHHHHHhhhccCCC-------chhHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCc
Q 003521 670 AVPLALGLLCISNP-------KVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNN 719 (813)
Q Consensus 670 g~~lALGL~~aGt~-------~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n 719 (813)
-+|.+++=+.|||. +..++..|-.+.+..+-..|.-|..|++=..+|.+.
T Consensus 341 EAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~ 397 (514)
T KOG0166|consen 341 EACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTP 397 (514)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCH
Confidence 99999999999998 334555666666777777888899999887777764
No 26
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.16 E-value=0.16 Score=67.63 Aligned_cols=280 Identities=14% Similarity=0.084 Sum_probs=172.1
Q ss_pred chhHHhHhhhhcCCChhhHHHHHHHHHHhhcCCCCCh-----hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCH--
Q 003521 427 DSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDC-----DPALALLSEYVGREDACIRIGAIMGLGISYAGTQND-- 499 (813)
Q Consensus 427 ~~~l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~-----d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~e-- 499 (813)
.++...|-..|...+..++.-++.+|..+..+..+.. .-.+..|.+.|.+++..++.-|+..||.+..|+.+.
T Consensus 403 ~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~ 482 (2102)
T PLN03200 403 AEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKW 482 (2102)
T ss_pred ccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3456666667777778888888888877766532100 014567788888888888888999999887765421
Q ss_pred -----HHHHHHHHhccCCCCchhHHHHHHHHHhhHhcCCCC-HH------HHHHHHHHHhccCccccCchhHHHHHHHHH
Q 003521 500 -----QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCN-EE------VAQAIIFALMDRSESELGEPLTRLIPLGLG 567 (813)
Q Consensus 500 -----~i~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~~-~e------~~e~ll~~L~~~~~~~l~e~~~r~~~lglg 567 (813)
..+..|..+|..+ +.++..-|+.+||-+-.++.+ .. ++..|++.|.. . ..+..+-++.+|.
T Consensus 483 aIieaGaIP~LV~LL~s~--~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~s-g----d~~~q~~Aa~AL~ 555 (2102)
T PLN03200 483 AITAAGGIPPLVQLLETG--SQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKN-G----GPKGQEIAAKTLT 555 (2102)
T ss_pred HHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhC-C----CHHHHHHHHHHHH
Confidence 2356677777643 334555688899977543321 11 23345555422 1 2345666777775
Q ss_pred -HhhcCChhhHHHHHHHhhhhhhhhhhhhhHHHHHHHH-hcCC---------CHHHHHHHHhhhcccCCCCcchhhHHHH
Q 003521 568 -LLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAY-AGTG---------NVLKVQNLLGHCAQHHEKGEAYQGPAVL 636 (813)
Q Consensus 568 -Ll~lG~~e~~~~~i~~L~~~~~p~~r~~~~~~~glAy-aGTG---------n~~~iq~LL~~~~~~~~d~~~vrr~Avl 636 (813)
|+.-|..+.+..+++.|.........+ ..-+++... .+.+ +...+..|.+...+. ++ .++.-|+-
T Consensus 556 nLi~~~d~~~I~~Lv~LLlsdd~~~~~~-aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg-s~--~ikk~Aa~ 631 (2102)
T PLN03200 556 KLVRTADAATISQLTALLLGDLPESKVH-VLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS-KE--ETQEKAAS 631 (2102)
T ss_pred HHHhccchhHHHHHHHHhcCCChhHHHH-HHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC-CH--HHHHHHHH
Confidence 445566667777777665443222222 222222211 1112 123455555555432 33 78888888
Q ss_pred HHHHhhccchhhH------HHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCC-ch--h-----HHHHHHHhhcCCchHH
Q 003521 637 GIAMVAMAEELGL------EMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNP-KV--N-----VMDTLSRLSHDTDSEV 702 (813)
Q Consensus 637 glalI~~~~~~g~------e~~~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~-~~--~-----aid~L~~l~~D~d~~V 702 (813)
.|+-++.+++--. +.++.++.+| ++++..+|+.++.||+-++-+.. +. . ++..|-.+.++++..|
T Consensus 632 iLsnL~a~~~d~~~avv~agaIpPLV~LL-ss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v 710 (2102)
T PLN03200 632 VLADIFSSRQDLCESLATDEIINPCIKLL-TNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEV 710 (2102)
T ss_pred HHHHHhcCChHHHHHHHHcCCHHHHHHHH-hcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHH
Confidence 8888887776110 1244555554 56888999999999987764333 22 1 3455777789999999
Q ss_pred HHHHHHHHHHHcCCCC
Q 003521 703 AMAAVISLGLIGSGTN 718 (813)
Q Consensus 703 r~~AiiAlGlV~aGt~ 718 (813)
+..|.-|++-+.....
T Consensus 711 ~e~Al~ALanLl~~~e 726 (2102)
T PLN03200 711 AEQAVCALANLLSDPE 726 (2102)
T ss_pred HHHHHHHHHHHHcCch
Confidence 9999999988876553
No 27
>PTZ00429 beta-adaptin; Provisional
Probab=97.03 E-value=0.21 Score=61.39 Aligned_cols=269 Identities=15% Similarity=0.121 Sum_probs=139.7
Q ss_pred HhHhhhhcCCChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC----HHHHHHHH
Q 003521 431 AQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN----DQIRHKLS 506 (813)
Q Consensus 431 ~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~----e~i~e~L~ 506 (813)
+.|.+-+.++++.+|+-|+=.+|.|..... .+.+...+...+.+++++||-.|++++.-+|--..+ ..+.+.|.
T Consensus 108 Ntl~KDl~d~Np~IRaLALRtLs~Ir~~~i--~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~ 185 (746)
T PTZ00429 108 NTFLQDTTNSSPVVRALAVRTMMCIRVSSV--LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLV 185 (746)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCCcHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHH
Confidence 345555677899999999999997754221 233455556677889999999999999999875432 24567777
Q ss_pred HhccCCCCchhHHHHHHHHHhhHhcCCCCHH---HHHHHHHHHhccCccccCchhHHHHHHHHHHhhcCC--hhhHHHHH
Q 003521 507 TILNDAKSPLDVIAFSAISLGLIYVGSCNEE---VAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGK--QESVEATA 581 (813)
Q Consensus 507 ~~L~d~~~~~e~~~~AaLaLGLi~lGs~~~e---~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~lG~--~e~~~~~i 581 (813)
..|.|++ ..|...|..+|=-|- ..+++ .....+..|...- .+ -++|.+...+-+ |..+.. .+.+..++
T Consensus 186 ~LL~D~d--p~Vv~nAl~aL~eI~--~~~~~~l~l~~~~~~~Ll~~L-~e-~~EW~Qi~IL~l-L~~y~P~~~~e~~~il 258 (746)
T PTZ00429 186 ELLNDNN--PVVASNAAAIVCEVN--DYGSEKIESSNEWVNRLVYHL-PE-CNEWGQLYILEL-LAAQRPSDKESAETLL 258 (746)
T ss_pred HHhcCCC--ccHHHHHHHHHHHHH--HhCchhhHHHHHHHHHHHHHh-hc-CChHHHHHHHHH-HHhcCCCCcHHHHHHH
Confidence 7777764 334333444443331 11111 1112222222211 11 235766654422 222322 22344455
Q ss_pred HHhhh---hhhhhhhhhhHHHHHHHHhcCCCHHHHHH--------HHhhhcccCCCCcchhhHHHHHHHHhhccchhhHH
Q 003521 582 EVSKT---FNEKIRKYCDMTLLSCAYAGTGNVLKVQN--------LLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLE 650 (813)
Q Consensus 582 ~~L~~---~~~p~~r~~~~~~~glAyaGTGn~~~iq~--------LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e 650 (813)
+.+.. ..++.+-..++=+ -+.+.-..+...++. |+... + ++ +.+|-.+.-.|-++....| .
T Consensus 259 ~~l~~~Lq~~N~AVVl~Aik~-il~l~~~~~~~~~~~~~~rl~~pLv~L~-s--s~-~eiqyvaLr~I~~i~~~~P---~ 330 (746)
T PTZ00429 259 TRVLPRMSHQNPAVVMGAIKV-VANLASRCSQELIERCTVRVNTALLTLS-R--RD-AETQYIVCKNIHALLVIFP---N 330 (746)
T ss_pred HHHHHHhcCCCHHHHHHHHHH-HHHhcCcCCHHHHHHHHHHHHHHHHHhh-C--CC-ccHHHHHHHHHHHHHHHCH---H
Confidence 54432 1222222221110 011111112232222 22221 1 11 2556555557777776666 4
Q ss_pred HHHHHHHHH-hhcCCh-hHHhHHHHHHhhhccCCCchhHHHHHHHhhcCCchHHHHHHHHHHHHHcCC
Q 003521 651 MAIRSLEHL-LQYGEQ-NIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSG 716 (813)
Q Consensus 651 ~~~~~l~~L-~~~~~~-~VR~g~~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aG 716 (813)
.....++.+ ..+.|| +||.-.-=.|-.++-.++-.++++-|..++.|.|..+++-||-|+|-+...
T Consensus 331 lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k 398 (746)
T PTZ00429 331 LLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIK 398 (746)
T ss_pred HHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Confidence 333334443 444454 454433333333333444456777788888888888888899998888654
No 28
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.00 E-value=0.036 Score=64.88 Aligned_cols=80 Identities=29% Similarity=0.287 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhcCChhHHhHHHHHHhhhccCC-CchhHHHH-HHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 003521 651 MAIRSLEHLLQYGEQNIRRAVPLALGLLCISN-PKVNVMDT-LSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRN 728 (813)
Q Consensus 651 ~~~~~l~~L~~~~~~~VR~g~~lALGL~~aGt-~~~~aid~-L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~Lr~ 728 (813)
.+...+..++.+.++++|+.+.-++..+...+ +...-... +..+..|.|..||..|+--+..+ +++..+..++..
T Consensus 267 ~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l---~~~~n~~~Il~e 343 (526)
T PF01602_consen 267 KAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLYKL---ANESNVKEILDE 343 (526)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred hhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHhhc---ccccchhhHHHH
Confidence 44455555556777777777777766665444 11111111 12223466677776554433333 233344555555
Q ss_pred Hhhhh
Q 003521 729 LSSYY 733 (813)
Q Consensus 729 l~~~~ 733 (813)
|.+|.
T Consensus 344 L~~~l 348 (526)
T PF01602_consen 344 LLKYL 348 (526)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 29
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.93 E-value=0.18 Score=59.07 Aligned_cols=293 Identities=16% Similarity=0.133 Sum_probs=165.2
Q ss_pred hhHHHHHHHhhhhcccccch---hHHhHhhhhcCCChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcCCCHHHHHHH
Q 003521 409 HGKMSAAASLGMILLWDVDS---GLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGA 485 (813)
Q Consensus 409 ~~k~sA~aslGlI~~~~~~~---~l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~~~~v~~gA 485 (813)
-.|-.+-.++..+...+.+. +.+.+.+-+.++++++++-|+=.++-+... .-.+++...+...+.++++++|..|
T Consensus 57 ~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~--~~~~~l~~~v~~ll~~~~~~VRk~A 134 (526)
T PF01602_consen 57 ELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTP--EMAEPLIPDVIKLLSDPSPYVRKKA 134 (526)
T ss_dssp HHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SH--HHHHHHHHHHHHHHHSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhccc--chhhHHHHHHHHHhcCCchHHHHHH
Confidence 34555555555555545543 234455567789999999999999988631 1123455566677888999999999
Q ss_pred HHHHHHHhccCCC--HH-HHHHHHHhccCCCCchhHHHHHHHHHhhHhcCCCCHHH----HHHHHHHHhccCccccCchh
Q 003521 486 IMGLGISYAGTQN--DQ-IRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEV----AQAIIFALMDRSESELGEPL 558 (813)
Q Consensus 486 ~lGLGl~y~Gs~~--e~-i~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~~~e~----~e~ll~~L~~~~~~~l~e~~ 558 (813)
++++.-+|-...+ ++ +.+.|...+.|+ +..+...|..++.-+ ..+++. ...+...|...- . ..++|
T Consensus 135 ~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~--~~~V~~~a~~~l~~i---~~~~~~~~~~~~~~~~~L~~~l-~-~~~~~ 207 (526)
T PF01602_consen 135 ALALLKIYRKDPDLVEDELIPKLKQLLSDK--DPSVVSAALSLLSEI---KCNDDSYKSLIPKLIRILCQLL-S-DPDPW 207 (526)
T ss_dssp HHHHHHHHHHCHCCHHGGHHHHHHHHTTHS--SHHHHHHHHHHHHHH---HCTHHHHTTHHHHHHHHHHHHH-T-CCSHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhhhccCC--cchhHHHHHHHHHHH---ccCcchhhhhHHHHHHHhhhcc-c-ccchH
Confidence 9999999865433 23 577777777666 345554555555555 455544 333333332110 1 14567
Q ss_pred HHHHHHHHHHhhcCCh--hhH--HHHHHHhhh---hhhhhhhhhhHHHHHHHHhcCCC--HHHHHHHHhhhcccCCCCcc
Q 003521 559 TRLIPLGLGLLYLGKQ--ESV--EATAEVSKT---FNEKIRKYCDMTLLSCAYAGTGN--VLKVQNLLGHCAQHHEKGEA 629 (813)
Q Consensus 559 ~r~~~lglgLl~lG~~--e~~--~~~i~~L~~---~~~p~~r~~~~~~~glAyaGTGn--~~~iq~LL~~~~~~~~d~~~ 629 (813)
.+...+-+- ..+.+. +.. ..+++.+.. ...+.+.+.++-+.. .+...-. ..+++.|..+..+. + ++
T Consensus 208 ~q~~il~~l-~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~-~l~~~~~~~~~~~~~L~~lL~s~-~--~n 282 (526)
T PF01602_consen 208 LQIKILRLL-RRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLII-KLSPSPELLQKAINPLIKLLSSS-D--PN 282 (526)
T ss_dssp HHHHHHHHH-TTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHSSSHHHHHHHHHHHHHHHTSS-S--HH
T ss_pred HHHHHHHHH-HhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHH-HhhcchHHHHhhHHHHHHHhhcc-c--ch
Confidence 665544332 233332 233 234444332 233444443222211 1111111 23566677777632 2 26
Q ss_pred hhhHHHHHHHHhhccchhhHHHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchhHHHHHHHhhcCC-chHHHHHHHH
Q 003521 630 YQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDT-DSEVAMAAVI 708 (813)
Q Consensus 630 vrr~AvlglalI~~~~~~g~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~~~~aid~L~~l~~D~-d~~Vr~~Aii 708 (813)
+|..+.-.|..+....+.......-.+..+..+.++.||.-+.-.+--++--++-.++++.|.++.++. +.+++..++-
T Consensus 283 vr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~ 362 (526)
T PF01602_consen 283 VRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIK 362 (526)
T ss_dssp HHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHH
T ss_pred hehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHH
Confidence 788888788888776631111111122234447788998877666666554445567888888888665 6668888887
Q ss_pred HHHHHcC
Q 003521 709 SLGLIGS 715 (813)
Q Consensus 709 AlGlV~a 715 (813)
+++-+..
T Consensus 363 ~I~~la~ 369 (526)
T PF01602_consen 363 AIGDLAE 369 (526)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7776653
No 30
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.74 E-value=0.4 Score=64.11 Aligned_cols=270 Identities=16% Similarity=0.096 Sum_probs=171.2
Q ss_pred cchhhHHHHHHHhhhhcccccc--------hhHHhHhhhhcCCChhhHHHHHHHHHHhhcCCCCChh------hHHHHHH
Q 003521 406 NKEHGKMSAAASLGMILLWDVD--------SGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCD------PALALLS 471 (813)
Q Consensus 406 ~~~~~k~sA~aslGlI~~~~~~--------~~l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~d------~~~~lL~ 471 (813)
.+.-.+-.|+..+|.|-.++.+ +|+..|-+.|.+++..++--|+-+||-+.++.. +.. -++..|.
T Consensus 458 ~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~-qir~iV~~aGAIppLV 536 (2102)
T PLN03200 458 SSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSE-DIRACVESAGAVPALL 536 (2102)
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcH-HHHHHHHHCCCHHHHH
Confidence 3445566677778887766543 467778888888899999999999998766321 110 1445667
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHhccCCCCchhHHHHHHHHHhhHhc-CCCC---------HHHHHH
Q 003521 472 EYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYV-GSCN---------EEVAQA 541 (813)
Q Consensus 472 ~~L~~~~~~v~~gA~lGLGl~y~Gs~~e~i~e~L~~~L~d~~~~~e~~~~AaLaLGLi~l-Gs~~---------~e~~e~ 541 (813)
+.|.+.+...+.-|+-+|.-...+. +.+....|...+..++.... ..+.-++|.+.- +.++ ...++.
T Consensus 537 ~LL~sgd~~~q~~Aa~AL~nLi~~~-d~~~I~~Lv~LLlsdd~~~~--~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~ 613 (2102)
T PLN03200 537 WLLKNGGPKGQEIAAKTLTKLVRTA-DAATISQLTALLLGDLPESK--VHVLDVLGHVLSVASLEDLVREGSAANDALRT 613 (2102)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHhcc-chhHHHHHHHHhcCCChhHH--HHHHHHHHHHHhhcchhHHHHHhhhccccHHH
Confidence 7788877788888888888765443 45566667777653322222 234446666532 2232 234555
Q ss_pred HHHHHhccCccccCchhHHHHHHHHHHhhcCChhhHH---------HHHHHhhhhhhhhhhhhhHHHHHHHHh-cCCCH-
Q 003521 542 IIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVE---------ATAEVSKTFNEKIRKYCDMTLLSCAYA-GTGNV- 610 (813)
Q Consensus 542 ll~~L~~~~~~~l~e~~~r~~~lglgLl~lG~~e~~~---------~~i~~L~~~~~p~~r~~~~~~~glAya-GTGn~- 610 (813)
|.+.|. ++ ++.+.+-+++.++=++-|+++.++ +++..|..-+.++.+. ++++++-.+- |+.+.
T Consensus 614 Lv~LL~--sg---s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~ke-AA~AL~nL~~~~~~~q~ 687 (2102)
T PLN03200 614 LIQLLS--SS---KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQ-SARALAALSRSIKENRK 687 (2102)
T ss_pred HHHHHc--CC---CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHH-HHHHHHHHHhCCCHHHH
Confidence 665542 22 456778888899988889888644 4566666555555454 4555444433 33221
Q ss_pred H------HHHHHHhhhcccCCCCcchhhHHHHHHHHhhccchh----hHHHHHHHHHHHhhcCChhHHhHHHHHHhhhcc
Q 003521 611 L------KVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEEL----GLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCI 680 (813)
Q Consensus 611 ~------~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~----g~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~a 680 (813)
. +|..|.....+. +. +++..++-+|+.++...+. +.+.+...+-.+++.+++..|..++.||.-+|-
T Consensus 688 ~~~v~~GaV~pL~~LL~~~-d~--~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~ 764 (2102)
T PLN03200 688 VSYAAEDAIKPLIKLAKSS-SI--EVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLK 764 (2102)
T ss_pred HHHHHcCCHHHHHHHHhCC-Ch--HHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Confidence 1 234466666443 22 7888999999999875442 122234556677889999999999999999987
Q ss_pred CCCchhHH
Q 003521 681 SNPKVNVM 688 (813)
Q Consensus 681 Gt~~~~ai 688 (813)
+.+..+++
T Consensus 765 ~~~~~~~~ 772 (2102)
T PLN03200 765 HFPVDDVL 772 (2102)
T ss_pred CCChhHHH
Confidence 77755533
No 31
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.32 E-value=4.1 Score=49.69 Aligned_cols=305 Identities=15% Similarity=0.111 Sum_probs=158.9
Q ss_pred hcccccchhHHhHhhhhcCCChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC-H
Q 003521 421 ILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN-D 499 (813)
Q Consensus 421 I~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~-e 499 (813)
...|+.++++..+.+.+........ +...+|.++.... +.+.++..+...+...... ..+...+|.+|.-.++ +
T Consensus 578 ~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~ 652 (899)
T TIGR02917 578 LGKGQLKKALAILNEAADAAPDSPE--AWLMLGRAQLAAG-DLNKAVSSFKKLLALQPDS--ALALLLLADAYAVMKNYA 652 (899)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCCHH
Confidence 3467888888888877653333333 3344444443322 2234666666655432111 1234456666644444 3
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCccccCchhHHHHHHHHHHhhcCChhhHHH
Q 003521 500 QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEA 579 (813)
Q Consensus 500 ~i~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~lG~~e~~~~ 579 (813)
+..+.+...+.......+ +.+.++.++.-.++.+.+..+++.+.+..+. +. .....+|..+...|+-+.+..
T Consensus 653 ~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~g~~~~A~~ 724 (899)
T TIGR02917 653 KAITSLKRALELKPDNTE----AQIGLAQLLLAAKRTESAKKIAKSLQKQHPK---AA-LGFELEGDLYLRQKDYPAAIQ 724 (899)
T ss_pred HHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC---Ch-HHHHHHHHHHHHCCCHHHHHH
Confidence 455555555431111222 4455666666667767666777766543221 11 122334445555566666666
Q ss_pred HHHHhhhh-hhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhcccCCCCcchhhHHHHHHHHhhccchhhHHHHHHHHHH
Q 003521 580 TAEVSKTF-NEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEH 658 (813)
Q Consensus 580 ~i~~L~~~-~~p~~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e~~~~~l~~ 658 (813)
.++..... +++ .....++.+|...|+.....+.+..+.+...+ ++.....+|..+...|+. +.+...++.
T Consensus 725 ~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~g~~---~~A~~~~~~ 795 (899)
T TIGR02917 725 AYRKALKRAPSS----QNAIKLHRALLASGNTAEAVKTLEAWLKTHPN--DAVLRTALAELYLAQKDY---DKAIKHYRT 795 (899)
T ss_pred HHHHHHhhCCCc----hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCcCH---HHHHHHHHH
Confidence 66654433 222 34456778888899876554444433333222 455555556666666776 888888888
Q ss_pred HhhcCChhHHhHHHHHHhhhccCCCchhHHHHHHHhh-cCCchHHHHHHHHHHHHHcCCCCch-HHHHHHHHHhhhhccC
Q 003521 659 LLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLS-HDTDSEVAMAAVISLGLIGSGTNNA-RIAGMLRNLSSYYYKD 736 (813)
Q Consensus 659 L~~~~~~~VR~g~~lALGL~~aGt~~~~aid~L~~l~-~D~d~~Vr~~AiiAlGlV~aGt~n~-rv~~~Lr~l~~~~~~d 736 (813)
+.+....+.. +-..+|.++...++.++++.+.+.. .+|++... ...+|.+....++. +....+++..+....+
T Consensus 796 ~~~~~p~~~~--~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~ 870 (899)
T TIGR02917 796 VVKKAPDNAV--VLNNLAWLYLELKDPRALEYAEKALKLAPNIPAI---LDTLGWLLVEKGEADRALPLLRKAVNIAPEA 870 (899)
T ss_pred HHHhCCCCHH--HHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 8765433222 2233344444445577898888764 34443322 23455555555542 3344454444322223
Q ss_pred hhhHHHHHHHHhhhhcCC
Q 003521 737 ANLLFCVRIAQGLVHMGK 754 (813)
Q Consensus 737 ~~~~f~~~lAqGll~~G~ 754 (813)
+ .....+++.+...|.
T Consensus 871 ~--~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 871 A--AIRYHLALALLATGR 886 (899)
T ss_pred h--HHHHHHHHHHHHcCC
Confidence 3 344456666666654
No 32
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.14 E-value=0.42 Score=58.42 Aligned_cols=266 Identities=21% Similarity=0.253 Sum_probs=151.7
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHHHHhccC---CCHHHHHHHHHhccCCCCchhHHHHHHHHHhhHhcCCCCHHHHHHH
Q 003521 467 LALLSEYVGR-EDACIRIGAIMGLGISYAGT---QNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAI 542 (813)
Q Consensus 467 ~~lL~~~L~~-~~~~v~~gA~lGLGl~y~Gs---~~e~i~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~~~e~~e~l 542 (813)
..+..+..+. .+..+++-|.+.||-+.-+- ...++...+...+..+ +-++-.+|++|||.+-+|+-+.-. -.+
T Consensus 820 ~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp--~edvksAAs~ALGsl~vgnl~~yL-pfi 896 (1233)
T KOG1824|consen 820 TKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSP--SEDVKSAASYALGSLAVGNLPKYL-PFI 896 (1233)
T ss_pred HHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCC--hHHHHHHHHHHhhhhhcCchHhHH-HHH
Confidence 3444444433 34678888999988865432 2235556666666544 456777889999988777654322 233
Q ss_pred HHHHhccCccccCchhHHHHHHHHHHhhcCChhhHHHHHHHhhhhhhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhcc
Q 003521 543 IFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQ 622 (813)
Q Consensus 543 l~~L~~~~~~~l~e~~~r~~~lglgLl~lG~~e~~~~~i~~L~~~~~p~~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~ 622 (813)
++.+ ++| +...++-+ .+ +.+.+....-...+. .-+++...|+..|..
T Consensus 897 l~qi----~sq---pk~QyLLL-hS------------lkevi~~~svd~~~~-------------~v~~IW~lL~k~cE~ 943 (1233)
T KOG1824|consen 897 LEQI----ESQ---PKRQYLLL-HS------------LKEVIVSASVDGLKP-------------YVEKIWALLFKHCEC 943 (1233)
T ss_pred HHHH----hcc---hHhHHHHH-HH------------HHHHHHHhccchhhh-------------hHHHHHHHHHHhccc
Confidence 3321 222 12222211 00 111111100000010 112333456666643
Q ss_pred cCCCCcchhhHHHHHHHHhhccchhhHHHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchhHHHHHH--------Hh
Q 003521 623 HHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLS--------RL 694 (813)
Q Consensus 623 ~~~d~~~vrr~AvlglalI~~~~~~g~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~~~~aid~L~--------~l 694 (813)
.+| -.|....-++|.+..-+| +...--++.++.++.|+.|..+--|.-. .=+-++..+|.+. ++
T Consensus 944 -~ee--gtR~vvAECLGkL~l~ep---esLlpkL~~~~~S~a~~~rs~vvsavKf--sisd~p~~id~~lk~~ig~fl~~ 1015 (1233)
T KOG1824|consen 944 -AEE--GTRNVVAECLGKLVLIEP---ESLLPKLKLLLRSEASNTRSSVVSAVKF--SISDQPQPIDPLLKQQIGDFLKL 1015 (1233)
T ss_pred -chh--hhHHHHHHHhhhHHhCCh---HHHHHHHHHHhcCCCcchhhhhhheeee--eecCCCCccCHHHHHHHHHHHHH
Confidence 333 567778889999999999 8877888889999999999988776654 3455666666543 23
Q ss_pred hcCCchHHHHHHHHHHHHHcCCCCch-HHHHHHHHHhhhhccChhhH-HHHHHHHhhhhcCCCcccccccC-C-CCC-CC
Q 003521 695 SHDTDSEVAMAAVISLGLIGSGTNNA-RIAGMLRNLSSYYYKDANLL-FCVRIAQGLVHMGKGLLTLNPYH-S-DRF-LL 769 (813)
Q Consensus 695 ~~D~d~~Vr~~AiiAlGlV~aGt~n~-rv~~~Lr~l~~~~~~d~~~~-f~~~lAqGll~~G~g~~tlsp~~-s-d~~-~~ 769 (813)
..|||..|||.|+.++--+. .|-| -|+.+|..|---.+.+...+ =-+ +.+-+.||. . |.| -+
T Consensus 1016 ~~dpDl~VrrvaLvv~nSaa--hNKpslIrDllpeLLp~Ly~eTkvrkelI-----------reVeMGPFKH~VDdgLd~ 1082 (1233)
T KOG1824|consen 1016 LRDPDLEVRRVALVVLNSAA--HNKPSLIRDLLPELLPLLYSETKVRKELI-----------REVEMGPFKHTVDDGLDL 1082 (1233)
T ss_pred HhCCchhHHHHHHHHHHHHH--ccCHhHHHHHHHHHHHHHHHhhhhhHhhh-----------hhhcccCccccccchHHH
Confidence 68999999999988775443 3322 35555555433221221111 011 224455762 1 233 47
Q ss_pred ChHHHHHHHHHHhhhccccc
Q 003521 770 SPTALAGIVTTLFACLDMKA 789 (813)
Q Consensus 770 ~~~a~~gL~~~l~~~ld~~~ 789 (813)
|+.|+=+|.+.+=+|+|-..
T Consensus 1083 RKaaFEcmytLLdscld~~d 1102 (1233)
T KOG1824|consen 1083 RKAAFECMYTLLDSCLDRLD 1102 (1233)
T ss_pred HHHHHHHHHHHHHhhhhhcc
Confidence 88999999998888877544
No 33
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.07 E-value=5.3 Score=48.66 Aligned_cols=257 Identities=14% Similarity=0.080 Sum_probs=126.0
Q ss_pred HhhhhcccccchhHHhHhhhhcCCChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccC
Q 003521 417 SLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGT 496 (813)
Q Consensus 417 slGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs 496 (813)
+......|+.++++..+.+.+...... ..+...+|.++.... +.+.+...+...+....... .+...++.++.-.
T Consensus 608 ~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~ 682 (899)
T TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLALQPDS--ALALLLLADAYAVMK-NYAKAITSLKRALELKPDNT--EAQIGLAQLLLAA 682 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHc
Confidence 333455678888888777665432222 234445555543222 23447777766664332211 2334455555544
Q ss_pred CCHH-HHHHHHHhccCCCCchhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCccccCchhHHHHHHHHHHhhcCChh
Q 003521 497 QNDQ-IRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE 575 (813)
Q Consensus 497 ~~e~-i~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~lG~~e 575 (813)
++.+ ..+.+...........+ .-..+|.++...++.+.+...+.......+. . .....++..+...|+.+
T Consensus 683 ~~~~~A~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~---~--~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 683 KRTESAKKIAKSLQKQHPKAAL----GFELEGDLYLRQKDYPAAIQAYRKALKRAPS---S--QNAIKLHRALLASGNTA 753 (899)
T ss_pred CCHHHHHHHHHHHHhhCcCChH----HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC---c--hHHHHHHHHHHHCCCHH
Confidence 4443 33333333221111122 3345677777777766555555544432222 1 22334555666678877
Q ss_pred hHHHHHHHhhhhhhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhcccCCCCcchhhHHHHHHHHhhccchhhHHHHHHH
Q 003521 576 SVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRS 655 (813)
Q Consensus 576 ~~~~~i~~L~~~~~p~~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e~~~~~ 655 (813)
++...++......... ......++..|...|+.......++.+.....+ +....--++......++ +.+...
T Consensus 754 ~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~----~~A~~~ 825 (899)
T TIGR02917 754 EAVKTLEAWLKTHPND--AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD--NAVVLNNLAWLYLELKD----PRALEY 825 (899)
T ss_pred HHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCc----HHHHHH
Confidence 7777776655432221 234456778888889876655555444332222 22222223333333333 235555
Q ss_pred HHHHhhc--CChhHHhHHHHHHhhhccCCCc-hhHHHHHHHhh-cCCc
Q 003521 656 LEHLLQY--GEQNIRRAVPLALGLLCISNPK-VNVMDTLSRLS-HDTD 699 (813)
Q Consensus 656 l~~L~~~--~~~~VR~g~~lALGL~~aGt~~-~~aid~L~~l~-~D~d 699 (813)
++..... .+|.+. ..+|.++...++ .+++..+.+.. .+|+
T Consensus 826 ~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 826 AEKALKLAPNIPAIL----DTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHhhCCCCcHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5555432 233332 234444444443 35777777664 3443
No 34
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.07 E-value=3.3 Score=46.19 Aligned_cols=281 Identities=14% Similarity=0.076 Sum_probs=147.5
Q ss_pred hcccccchhHHhHhhhhcCCChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcCCC--HHHHHHHHHHHHHHhccCCC
Q 003521 421 ILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRED--ACIRIGAIMGLGISYAGTQN 498 (813)
Q Consensus 421 I~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~~--~~v~~gA~lGLGl~y~Gs~~ 498 (813)
+..++.++++..+.+-+...... ..+...+|.++.... +.+.+...+...+..+. .....-+...||.+|...++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPET--VELHLALGNLFRRRG-EVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHcC-cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 45578888888888776543322 234555665554332 23447777766665432 23344567788888887666
Q ss_pred H-HHHHHHHHhccCCCCchhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCccccCchhHH-HHHHHHHHhhcCChhh
Q 003521 499 D-QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTR-LIPLGLGLLYLGKQES 576 (813)
Q Consensus 499 e-~i~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r-~~~lglgLl~lG~~e~ 576 (813)
- +..+.+...+....... .+-..++.++.-.++.+.+..++..+....+......... ...+|..+...|+-+.
T Consensus 123 ~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAE----GALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred HHHHHHHHHHHHcCCcchH----HHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 4 34444444443221111 3555677777777776655555555543322210111111 1223333344466667
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhcccCCCCcchhhHHHHHHHHhhccchhhHHHHHHHH
Q 003521 577 VEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSL 656 (813)
Q Consensus 577 ~~~~i~~L~~~~~p~~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e~~~~~l 656 (813)
+...++.+....... ....+.+|-.|...|+.....+++.-+.+...+ ........++-++...|+. +.+.+.+
T Consensus 199 A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~l~~~~~~~g~~---~~A~~~l 272 (389)
T PRK11788 199 ARALLKKALAADPQC--VRASILLGDLALAQGDYAAAIEALERVEEQDPE-YLSEVLPKLMECYQALGDE---AEGLEFL 272 (389)
T ss_pred HHHHHHHHHhHCcCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh-hHHHHHHHHHHHHHHcCCH---HHHHHHH
Confidence 777666655432221 124567788899999976655555544332111 0111223445556666666 7777888
Q ss_pred HHHhhcCChhHHhHHHHHHhhhccCCCch-hHHHHHHHh-hcCCchHHHHHHHHHHHHHcCCCC
Q 003521 657 EHLLQYGEQNIRRAVPLALGLLCISNPKV-NVMDTLSRL-SHDTDSEVAMAAVISLGLIGSGTN 718 (813)
Q Consensus 657 ~~L~~~~~~~VR~g~~lALGL~~aGt~~~-~aid~L~~l-~~D~d~~Vr~~AiiAlGlV~aGt~ 718 (813)
....+. +|..... ..+|.++...++. +++..+.+. ..+|++. ....+++..+...+.+
T Consensus 273 ~~~~~~-~p~~~~~--~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g 332 (389)
T PRK11788 273 RRALEE-YPGADLL--LALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEG 332 (389)
T ss_pred HHHHHh-CCCchHH--HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCc
Confidence 776653 3333222 4455544444443 566777654 4456643 3444555555444433
No 35
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=95.79 E-value=0.93 Score=48.54 Aligned_cols=234 Identities=16% Similarity=0.161 Sum_probs=149.6
Q ss_pred Cccccccchhh----HHHHHHHhhhhcccccchhHHhHhhhhc--CCChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHh
Q 003521 400 GNWLFKNKEHG----KMSAAASLGMILLWDVDSGLAQIDKYFH--STDNHVIAGALLGVGIVNCGIRNDCDPALALLSEY 473 (813)
Q Consensus 400 ~~wl~k~~~~~----k~sA~aslGlI~~~~~~~~l~~l~~yL~--s~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~ 473 (813)
-.|+++.-... |--.+..+|. |.-.+++..|..-+. +..+.+|.-|-.+||-+.. ++ ...+|..|
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ---~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~~---~~---~~~~l~k~ 108 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQ---MQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD---PE---SLEILTKY 108 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhh---hccchhhHHHHHHhcccccchHHHHHHHHHHHhhcc---hh---hHHHHHHH
Confidence 45888875433 3345666665 344556766666554 5678999999999998862 44 78888898
Q ss_pred hcCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHhcc-CCCCchhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCcc
Q 003521 474 VGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSES 552 (813)
Q Consensus 474 L~~~~~~v~~gA~lGLGl~y~Gs~~e~i~e~L~~~L~-d~~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~~ 552 (813)
.+++...++-..-+++.-+-.+..-..+ ..-.|..+ |++.+ -.++ -+..+-..|.+. +
T Consensus 109 ~~dp~~~v~ETc~lAi~rle~~~~~~~~-~~~~p~~SvdPa~p--------~~~s----------sv~~lr~~lld~--t 167 (289)
T KOG0567|consen 109 IKDPCKEVRETCELAIKRLEWKDIIDKI-ANSSPYISVDPAPP--------ANLS----------SVHELRAELLDE--T 167 (289)
T ss_pred hcCCccccchHHHHHHHHHHHhhccccc-cccCccccCCCCCc--------cccc----------cHHHHHHHHHhc--c
Confidence 8766655555566666654333221111 11223332 33222 0111 122333334332 2
Q ss_pred ccCchhHHHHHHHHHHhhcCChhhHHHHHHHhhhhhhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhcccCCCCcchhh
Q 003521 553 ELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQG 632 (813)
Q Consensus 553 ~l~e~~~r~~~lglgLl~lG~~e~~~~~i~~L~~~~~p~~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr 632 (813)
..-+-|+.+ -..|--.|.++++.++++.+... .+..|+-..++.| --....+|..|.....+..+ .+-||-
T Consensus 168 --~~l~~Ry~a-mF~LRn~g~EeaI~al~~~l~~~-SalfrhEvAfVfG----Ql~s~~ai~~L~k~L~d~~E-~pMVRh 238 (289)
T KOG0567|consen 168 --KPLFERYRA-MFYLRNIGTEEAINALIDGLADD-SALFRHEVAFVFG----QLQSPAAIPSLIKVLLDETE-HPMVRH 238 (289)
T ss_pred --hhHHHHHhh-hhHhhccCcHHHHHHHHHhcccc-hHHHHHHHHHHHh----hccchhhhHHHHHHHHhhhc-chHHHH
Confidence 234666632 23566779999999999999876 7888888777753 33455566666655543322 247899
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHhhcCChhHHhHHHHHHhhh
Q 003521 633 PAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLL 678 (813)
Q Consensus 633 ~AvlglalI~~~~~~g~e~~~~~l~~L~~~~~~~VR~g~~lALGL~ 678 (813)
-|.-++|.|+ + |.+..++..++.+.++.||-++..|+-+.
T Consensus 239 EaAeALGaIa--~----e~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 239 EAAEALGAIA--D----EDCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred HHHHHHHhhc--C----HHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 9999999985 3 78999999999999999999999998775
No 36
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.61 E-value=0.035 Score=50.87 Aligned_cols=78 Identities=24% Similarity=0.232 Sum_probs=54.0
Q ss_pred hhhHHHHHHHHhhccchhh-HHHHHHHHH---HHhhcCChhHHhHHHHHHhhhccCCC------chhHHHHHHHhhcCCc
Q 003521 630 YQGPAVLGIAMVAMAEELG-LEMAIRSLE---HLLQYGEQNIRRAVPLALGLLCISNP------KVNVMDTLSRLSHDTD 699 (813)
Q Consensus 630 vrr~AvlglalI~~~~~~g-~e~~~~~l~---~L~~~~~~~VR~g~~lALGL~~aGt~------~~~aid~L~~l~~D~d 699 (813)
.|+++++|++-++.+-+.. .+....++. ....+.|+.|||.+|-||.-+.-..+ -.++++.|.+++.|+|
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4778888888876554411 122222222 34567899999999999987642222 2578889999999999
Q ss_pred hHHHHHHH
Q 003521 700 SEVAMAAV 707 (813)
Q Consensus 700 ~~Vr~~Ai 707 (813)
..||.+|-
T Consensus 82 ~~Vr~~a~ 89 (97)
T PF12755_consen 82 ENVRSAAE 89 (97)
T ss_pred hhHHHHHH
Confidence 99998874
No 37
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.47 E-value=0.03 Score=45.10 Aligned_cols=48 Identities=35% Similarity=0.441 Sum_probs=35.7
Q ss_pred hhHHhHHHHHHhhhccCCC------chhHHHHHHHhhcCCchHHHHHHHHHHHH
Q 003521 665 QNIRRAVPLALGLLCISNP------KVNVMDTLSRLSHDTDSEVAMAAVISLGL 712 (813)
Q Consensus 665 ~~VR~g~~lALGL~~aGt~------~~~aid~L~~l~~D~d~~Vr~~AiiAlGl 712 (813)
|.||.+++.+||-+.-+.+ ..+++..|.++..|+++.||.+|+.|+|-
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 5678888888886443333 23567777888899999999999999984
No 38
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=95.45 E-value=0.72 Score=50.81 Aligned_cols=240 Identities=18% Similarity=0.165 Sum_probs=151.9
Q ss_pred HHhh-cCCCHHHHHHHHHHHHHHhccCCCH-------HHHHHHHHhccCCCCchhHHHHHHHHHhhHhcCCCC-H-----
Q 003521 471 SEYV-GREDACIRIGAIMGLGISYAGTQND-------QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCN-E----- 536 (813)
Q Consensus 471 ~~~L-~~~~~~v~~gA~lGLGl~y~Gs~~e-------~i~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~~-~----- 536 (813)
.+++ +......+..|+-+|-=+..||.+. ..+-++.+.|+++ ..++.-.+..|||-|.=.|.. .
T Consensus 120 vefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~--~~~V~eQavWALGNiAGDS~~~RD~vL~ 197 (526)
T COG5064 120 VEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSST--EDDVREQAVWALGNIAGDSEGCRDYVLQ 197 (526)
T ss_pred HHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCc--hHHHHHHHHHHhccccCCchhHHHHHHh
Confidence 3444 3345678888999998888888764 3567788888766 334444688899987321110 0
Q ss_pred -HHHHHHHHHHhccCccccCchhHHHHHHHHHHhhcCChh--------hHHHHHHHhhhhhhhhhhhhhHHHHHHHHhcC
Q 003521 537 -EVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE--------SVEATAEVSKTFNEKIRKYCDMTLLSCAYAGT 607 (813)
Q Consensus 537 -e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~lG~~e--------~~~~~i~~L~~~~~p~~r~~~~~~~glAyaGT 607 (813)
-+.+.++..+.+ +..|-++.|-+.+-|+=++-|+.- ++-+++..|.-..||-.-.-+++ ++.|..-
T Consensus 198 ~galeplL~ll~s---s~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~W--AiSYlsD 272 (526)
T COG5064 198 CGALEPLLGLLLS---SAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACW--AISYLSD 272 (526)
T ss_pred cCchHHHHHHHHh---ccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHH--HHHHhcc
Confidence 144566665542 222557889999999888888753 33345555555555554444444 4689999
Q ss_pred CCHHHHHHHHhhhc--------ccCCCCcchhhHHHHHHHHhhccchhhHH-----HHHHHHHHHhhcCChhHHhHHHHH
Q 003521 608 GNVLKVQNLLGHCA--------QHHEKGEAYQGPAVLGIAMVAMAEELGLE-----MAIRSLEHLLQYGEQNIRRAVPLA 674 (813)
Q Consensus 608 Gn~~~iq~LL~~~~--------~~~~d~~~vrr~AvlglalI~~~~~~g~e-----~~~~~l~~L~~~~~~~VR~g~~lA 674 (813)
|.+++|+..|+... +|.+ ..++.-|.=++|-|.-|++.-.+ -+...|..|+.+....||.-+|..
T Consensus 273 g~~E~i~avld~g~~~RLvElLs~~s--a~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWT 350 (526)
T COG5064 273 GPNEKIQAVLDVGIPGRLVELLSHES--AKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWT 350 (526)
T ss_pred CcHHHHHHHHhcCCcHHHHHHhcCcc--ccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhee
Confidence 99888886554322 2222 26777788888888888773211 144556666666666899999999
Q ss_pred HhhhccCCCch-------hHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCc
Q 003521 675 LGLLCISNPKV-------NVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNN 719 (813)
Q Consensus 675 LGL~~aGt~~~-------~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n 719 (813)
+.=+-|||-.. +.+..|-++.+..+-..+.-|+-|..=.+.|.++
T Consensus 351 iSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~ 402 (526)
T COG5064 351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLN 402 (526)
T ss_pred ecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 98888887532 2223344444555555666677777666666554
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=95.26 E-value=11 Score=46.66 Aligned_cols=332 Identities=13% Similarity=0.077 Sum_probs=160.3
Q ss_pred hhhHHHHHHHhhhhcccccch-hHHhHhhhhcCCChhhHHHHHHHHHHhhcCCCCCh--hhHHHHHHHhhcCCCHHHHHH
Q 003521 408 EHGKMSAAASLGMILLWDVDS-GLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDC--DPALALLSEYVGREDACIRIG 484 (813)
Q Consensus 408 ~~~k~sA~aslGlI~~~~~~~-~l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~--d~~~~lL~~~L~~~~~~v~~g 484 (813)
...|..|.-++|.|...+.-+ -...+.+-+.+.++|+|-.|++++.-++....+.. ......|.+.|.++++.+...
T Consensus 119 p~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~n 198 (746)
T PTZ00429 119 PVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASN 198 (746)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHH
Confidence 356666777777766544322 23334455556677777777777777665322110 113444555555555555555
Q ss_pred HHHHHHHHh---------------------------------------ccCCC---HHHHHHHHHhccCCCCchhHHHHH
Q 003521 485 AIMGLGISY---------------------------------------AGTQN---DQIRHKLSTILNDAKSPLDVIAFS 522 (813)
Q Consensus 485 A~lGLGl~y---------------------------------------~Gs~~---e~i~e~L~~~L~d~~~~~e~~~~A 522 (813)
|+..|--+. .=+.+ .++++.+.|.|...+ .-| .++
T Consensus 199 Al~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N--~AV-Vl~ 275 (746)
T PTZ00429 199 AAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQN--PAV-VMG 275 (746)
T ss_pred HHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCC--HHH-HHH
Confidence 544433221 10001 134444555554321 111 122
Q ss_pred HHHHhhHhcCCCCHHHHHHHH----HHHhccCccccCchhHHHHHH-HHHHhhcCChhhHHHHHHHh-hhhhhhh-hhhh
Q 003521 523 AISLGLIYVGSCNEEVAQAII----FALMDRSESELGEPLTRLIPL-GLGLLYLGKQESVEATAEVS-KTFNEKI-RKYC 595 (813)
Q Consensus 523 aLaLGLi~lGs~~~e~~e~ll----~~L~~~~~~~l~e~~~r~~~l-glgLl~lG~~e~~~~~i~~L-~~~~~p~-~r~~ 595 (813)
|.-+=+-+.-..+.+..+.+. ..|+.-.. .++-++++++ -+-++....++....-++.+ ...+||. +|.-
T Consensus 276 Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~s---s~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~ 352 (746)
T PTZ00429 276 AIKVVANLASRCSQELIERCTVRVNTALLTLSR---RDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLE 352 (746)
T ss_pred HHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhC---CCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHH
Confidence 222111111122334333322 11110000 2334566666 44444445555444434432 2223443 3322
Q ss_pred hHHHHHHHHhcCCCH-HHHHHHHhhhcccCCCCcchhhHHHHHHHHhhccchhhHHHHHHHHHHHhh-------------
Q 003521 596 DMTLLSCAYAGTGNV-LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQ------------- 661 (813)
Q Consensus 596 ~~~~~glAyaGTGn~-~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e~~~~~l~~L~~------------- 661 (813)
-+-+-+..+...|+ ..+.+|.+|+.+ .+. ++++.++-+||-++..-|.-.+.+.+.+-.|++
T Consensus 353 -KLeIL~~Lane~Nv~~IL~EL~eYa~d-~D~--ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~~~~v~e~i~vi 428 (746)
T PTZ00429 353 -KLRLLLKLVTPSVAPEILKELAEYASG-VDM--VFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDRRPELLPQVVTAA 428 (746)
T ss_pred -HHHHHHHHcCcccHHHHHHHHHHHhhc-CCH--HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 22222233444444 466888888864 333 788888889888887644222222222211111
Q ss_pred ------------------------cCChhHHhHHHHHHhhhccCCCchhHHHHHHHhhc---CCchHHHHHHHHHHHHHc
Q 003521 662 ------------------------YGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSH---DTDSEVAMAAVISLGLIG 714 (813)
Q Consensus 662 ------------------------~~~~~VR~g~~lALGL~~aGt~~~~aid~L~~l~~---D~d~~Vr~~AiiAlGlV~ 714 (813)
-.+|..|.+..+.+|-.+- --.++-+.|+++.+ +-+..||...+.+..=+.
T Consensus 429 k~IlrkyP~~~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~--~I~~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlf 506 (746)
T PTZ00429 429 KDIVRKYPELLMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCD--FIENGKDIIQRFIDTIMEHEQRVQLAILSAAVKMF 506 (746)
T ss_pred HHHHHHCccHHHHHHHHHhhcccccccHHHHHHHHHHHHhhHh--hHhhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHH
Confidence 1245577788888887542 12245567777763 345679888888887666
Q ss_pred CCCCc---hHHHHHHHHHhhhhccChhhHHHHHHHHhhhhc
Q 003521 715 SGTNN---ARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHM 752 (813)
Q Consensus 715 aGt~n---~rv~~~Lr~l~~~~~~d~~~~f~~~lAqGll~~ 752 (813)
...+. ..+..+|....++ ..||+.|=-+++-.-|+..
T Consensus 507 l~~p~~~~~~l~~vL~~~t~~-~~d~DVRDRA~~Y~rLLs~ 546 (746)
T PTZ00429 507 LRDPQGMEPQLNRVLETVTTH-SDDPDVRDRAFAYWRLLSK 546 (746)
T ss_pred hcCcHHHHHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHcC
Confidence 55542 2344455444333 4567765555554444443
No 40
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.68 E-value=6.6 Score=49.53 Aligned_cols=85 Identities=20% Similarity=0.198 Sum_probs=63.5
Q ss_pred chhhHHHHHHHHhhccchhhHHHHHHHH---HHHhhcCChhHHhHHHHHHhhhccCCCc------hhHHHHHHHhhcCCc
Q 003521 629 AYQGPAVLGIAMVAMAEELGLEMAIRSL---EHLLQYGEQNIRRAVPLALGLLCISNPK------VNVMDTLSRLSHDTD 699 (813)
Q Consensus 629 ~vrr~AvlglalI~~~~~~g~e~~~~~l---~~L~~~~~~~VR~g~~lALGL~~aGt~~------~~aid~L~~l~~D~d 699 (813)
...+.|.-+|..++++=+ |...++-++ ..++++.+..-|+++-+|++.+.=|.++ +++++...++..||.
T Consensus 324 ~~~~~A~~~lDrlA~~L~-g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dph 402 (1075)
T KOG2171|consen 324 TPYRAAEQALDRLALHLG-GKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPH 402 (1075)
T ss_pred CcHHHHHHHHHHHHhcCC-hhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCC
Confidence 456788888888887644 445555555 4567889999999999999977554433 244445556679999
Q ss_pred hHHHHHHHHHHHHHc
Q 003521 700 SEVAMAAVISLGLIG 714 (813)
Q Consensus 700 ~~Vr~~AiiAlGlV~ 714 (813)
+.||++|+.|+|-+.
T Consensus 403 prVr~AA~naigQ~s 417 (1075)
T KOG2171|consen 403 PRVRYAALNAIGQMS 417 (1075)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999999884
No 41
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=94.13 E-value=21 Score=44.53 Aligned_cols=178 Identities=12% Similarity=0.049 Sum_probs=102.2
Q ss_pred HhhcCChhhHHHHHHHhhhhhhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhcccCCCCc--chhhHHHHHHHHhhccc
Q 003521 568 LLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGE--AYQGPAVLGIAMVAMAE 645 (813)
Q Consensus 568 Ll~lG~~e~~~~~i~~L~~~~~p~~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~--~vrr~AvlglalI~~~~ 645 (813)
|+..|+-+++...++.+....++...+... .++.+|..+|+.......+.-+........ .....+-++.++.-.++
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~-~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQR-WVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHH-HHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 344566677777788877665433444333 247899999997766555544332221100 12334555556666666
Q ss_pred hhhHHHHHHHHHHHhhcCC------------hh---HHhHHHHHHhhhccCCCchhHHHHHHHhh-cCCchHHHHHHHHH
Q 003521 646 ELGLEMAIRSLEHLLQYGE------------QN---IRRAVPLALGLLCISNPKVNVMDTLSRLS-HDTDSEVAMAAVIS 709 (813)
Q Consensus 646 ~~g~e~~~~~l~~L~~~~~------------~~---VR~g~~lALGL~~aGt~~~~aid~L~~l~-~D~d~~Vr~~AiiA 709 (813)
. +.+...+..+.+... |+ ...-.-+|..+...| -..++++.|.+.. .+|+.. .+.+.
T Consensus 326 ~---~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g-~~~eA~~~l~~al~~~P~n~---~l~~~ 398 (765)
T PRK10049 326 Y---PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN-DLPQAEMRARELAYNAPGNQ---GLRID 398 (765)
T ss_pred H---HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCH---HHHHH
Confidence 6 778888887765421 11 111122233333333 3357778887764 466653 46688
Q ss_pred HHHHcCCCCch-HHHHHHHHHhhhhccChhhHHHHHHHHhhhhcCCCcc
Q 003521 710 LGLIGSGTNNA-RIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLL 757 (813)
Q Consensus 710 lGlV~aGt~n~-rv~~~Lr~l~~~~~~d~~~~f~~~lAqGll~~G~g~~ 757 (813)
+|.+....+++ +..+.+++... .+|+. ..+.+++|...++.|..
T Consensus 399 lA~l~~~~g~~~~A~~~l~~al~---l~Pd~-~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 399 YASVLQARGWPRAAENELKKAEV---LEPRN-INLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHh---hCCCC-hHHHHHHHHHHHHhCCH
Confidence 88888777754 34445554433 45653 34777888888887765
No 42
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=93.91 E-value=13 Score=41.42 Aligned_cols=250 Identities=14% Similarity=0.105 Sum_probs=136.9
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCH-HHHHHHHHhccCCCCchhHHHHHHHHHhh
Q 003521 450 LGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQND-QIRHKLSTILNDAKSPLDVIAFSAISLGL 528 (813)
Q Consensus 450 laLGli~~g~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~e-~i~e~L~~~L~d~~~~~e~~~~AaLaLGL 528 (813)
.|+.....|.. +.++..+...+...... ..+...+|.++...++. +..+.+...+..+.........+...+|.
T Consensus 41 ~g~~~~~~~~~---~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 41 KGLNFLLNEQP---DKAIDLFIEMLKVDPET--VELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred HHHHHHhcCCh---HHHHHHHHHHHhcCccc--HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 34444445443 34888888877643322 23556677777666653 45555555554332222222245678899
Q ss_pred HhcCCCCHHHHHHHHHHHhccCccccCchhHHHHHHHHHHhhcCChhhHHHHHHHhhhhh-hhhhh--hhhHHHHHHHHh
Q 003521 529 IYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFN-EKIRK--YCDMTLLSCAYA 605 (813)
Q Consensus 529 i~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~lG~~e~~~~~i~~L~~~~-~p~~r--~~~~~~~glAya 605 (813)
+++..++.+.+...+..+.+..+ ....-...++..+...|+-+++...++.+.... .+... ......++..|.
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEGD----FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCCc----chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 99988888777777766543211 112222334445555677777777777665432 11111 112245677888
Q ss_pred cCCCHHHHHHHHhhhcccCCCCcchhhHHHHHHHHhhccchhhHHHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCC-c
Q 003521 606 GTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNP-K 684 (813)
Q Consensus 606 GTGn~~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~-~ 684 (813)
..|+.......+.-+.+...+ ..+....+|..+...|+. +.+.+.+....+. +|.....+-..++.++...+ .
T Consensus 192 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 192 ARGDLDAARALLKKALAADPQ--CVRASILLGDLALAQGDY---AAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred hCCCHHHHHHHHHHHHhHCcC--CHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCH
Confidence 999976555444443322222 455556677777777777 8888888887764 33332223334444444444 3
Q ss_pred hhHHHHHHHhh-cCCchHHHHHHHHHHHHHcCCCC
Q 003521 685 VNVMDTLSRLS-HDTDSEVAMAAVISLGLIGSGTN 718 (813)
Q Consensus 685 ~~aid~L~~l~-~D~d~~Vr~~AiiAlGlV~aGt~ 718 (813)
.+++..+.++. .+|+..+. ..+|.+....+
T Consensus 266 ~~A~~~l~~~~~~~p~~~~~----~~la~~~~~~g 296 (389)
T PRK11788 266 AEGLEFLRRALEEYPGADLL----LALAQLLEEQE 296 (389)
T ss_pred HHHHHHHHHHHHhCCCchHH----HHHHHHHHHhC
Confidence 45666777654 35554432 34444444444
No 43
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.84 E-value=1.4 Score=52.61 Aligned_cols=175 Identities=10% Similarity=0.035 Sum_probs=99.7
Q ss_pred HHhhcCChhhHHHHHHHhhhhhhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhcccCCC-CcchhhHHHHHHHHhhcc-
Q 003521 567 GLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEK-GEAYQGPAVLGIAMVAMA- 644 (813)
Q Consensus 567 gLl~lG~~e~~~~~i~~L~~~~~p~~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d-~~~vrr~AvlglalI~~~- 644 (813)
+|.+.|+++.+..+.+.+...+-+-......+...++++-+.+...++.|+.+|.+.... .+.++..|++++|-+..+
T Consensus 349 al~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~ 428 (574)
T smart00638 349 AVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRY 428 (574)
T ss_pred HHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777664433333344455555555677888888888777654221 124667777777755431
Q ss_pred ---ch-----hhHHHHHHHHHHHh---hcCChhHHhHHHHHHhhhccCCCchhHHHHHHHhhc---CCchHHHHHHHHHH
Q 003521 645 ---EE-----LGLEMAIRSLEHLL---QYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSH---DTDSEVAMAAVISL 710 (813)
Q Consensus 645 ---~~-----~g~e~~~~~l~~L~---~~~~~~VR~g~~lALGL~~aGt~~~~aid~L~~l~~---D~d~~Vr~~AiiAl 710 (813)
.+ +-.+-++.+.+.|. ...+...+....-|||=+ |.+.++..|.++.. +....+|..|+.||
T Consensus 429 c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~----g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Al 504 (574)
T smart00638 429 CVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA----GHPSSIKVLEPYLEGAEPLSTFIRLAAILAL 504 (574)
T ss_pred hcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc----CChhHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 10 00122222222222 234566667777777744 55677777777764 33467888888888
Q ss_pred HHHcCCCCchHHHHHHHHHhhhhccChhhHHHHHHH
Q 003521 711 GLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIA 746 (813)
Q Consensus 711 GlV~aGt~n~rv~~~Lr~l~~~~~~d~~~~f~~~lA 746 (813)
..+.... ...+...|-.+.....+++..|+++-++
T Consensus 505 r~~a~~~-p~~v~~~l~~i~~n~~e~~EvRiaA~~~ 539 (574)
T smart00638 505 RNLAKRD-PRKVQEVLLPIYLNRAEPPEVRMAAVLV 539 (574)
T ss_pred HHHHHhC-chHHHHHHHHHHcCCCCChHHHHHHHHH
Confidence 8553322 2345555555444445566666666554
No 44
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.18 E-value=5.6 Score=47.57 Aligned_cols=122 Identities=20% Similarity=0.242 Sum_probs=71.6
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHH----HhhcCC-hh--------------HHhHHHHHHhhhccC---CCchhHHHH
Q 003521 633 PAVLGIAMVAMAEELGLEMAIRSLEH----LLQYGE-QN--------------IRRAVPLALGLLCIS---NPKVNVMDT 690 (813)
Q Consensus 633 ~AvlglalI~~~~~~g~e~~~~~l~~----L~~~~~-~~--------------VR~g~~lALGL~~aG---t~~~~aid~ 690 (813)
+..++-||.-|..|+ .+.+.+++.+ ++...+ |. .-.|.+=+|| .-. -.+.++.++
T Consensus 590 a~AL~~gF~P~~~~V-y~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg--~~ie~Lva~snl~~l 666 (885)
T KOG2023|consen 590 ASALGVGFLPYAQPV-YQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLG--SHIEPLVAQSNLLDL 666 (885)
T ss_pred HHHHhccccccCHHH-HHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhh--hchHHHhhhccHHHH
Confidence 456788888888886 5778888773 222221 11 1223333333 111 023448888
Q ss_pred HHHhhcCCchHHHHHHHHHHHHHcCCCC---chHHHHHHHHHhhhh-ccChhhHHHHHHHHhhhhcCCCcc
Q 003521 691 LSRLSHDTDSEVAMAAVISLGLIGSGTN---NARIAGMLRNLSSYY-YKDANLLFCVRIAQGLVHMGKGLL 757 (813)
Q Consensus 691 L~~l~~D~d~~Vr~~AiiAlGlV~aGt~---n~rv~~~Lr~l~~~~-~~d~~~~f~~~lAqGll~~G~g~~ 757 (813)
|...+.|+.++|||.|..=||=+-.-.. -|.++.++..+.... ..+..+-.-+.-|.|-+.+-.|.-
T Consensus 667 ll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~ 737 (885)
T KOG2023|consen 667 LLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLK 737 (885)
T ss_pred HHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchh
Confidence 8999999999999998776664432222 244555665554221 122335566778889887765544
No 45
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=93.15 E-value=3.7 Score=45.42 Aligned_cols=250 Identities=15% Similarity=0.142 Sum_probs=154.6
Q ss_pred CCChhhHHHHHHHHHHhhcCCCCCh----h-hHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC--HH-----HHHHHH
Q 003521 439 STDNHVIAGALLGVGIVNCGIRNDC----D-PALALLSEYVGREDACIRIGAIMGLGISYAGTQN--DQ-----IRHKLS 506 (813)
Q Consensus 439 s~~~~~k~GAllaLGli~~g~~~e~----d-~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~--e~-----i~e~L~ 506 (813)
...+..++-|.-+|--|.+|+.+.- | -+..++...|.+++.-++--++-+||=+.-.|.. .- +++.|+
T Consensus 126 ~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL 205 (526)
T COG5064 126 IQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLL 205 (526)
T ss_pred cchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHH
Confidence 3456667788888888888875431 1 2566777788888888888999999987443322 11 345566
Q ss_pred HhccCCCCchhHHHHHHHHHhhHhcCCCCH---H----HHHHHHHHHhccCccccCchhHHHHHHHHHHhhcCChhhHHH
Q 003521 507 TILNDAKSPLDVIAFSAISLGLIYVGSCNE---E----VAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEA 579 (813)
Q Consensus 507 ~~L~d~~~~~e~~~~AaLaLGLi~lGs~~~---e----~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~lG~~e~~~~ 579 (813)
.++..++...-..+-+-..|.-+.=|...+ . ++..+...++.+ +..+.-=+.++++.+-=|..|..++
T Consensus 206 ~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~-----D~evlvDA~WAiSYlsDg~~E~i~a 280 (526)
T COG5064 206 GLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSR-----DPEVLVDACWAISYLSDGPNEKIQA 280 (526)
T ss_pred HHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhc-----CHHHHHHHHHHHHHhccCcHHHHHH
Confidence 666555443444556777777776665422 2 222222222221 2335556778998888899998887
Q ss_pred HHHH---------hhh----hhhhhhhhhhHHHHHHHHhcCCCHH------------HHHHHHhhhcccCCCCcchhhHH
Q 003521 580 TAEV---------SKT----FNEKIRKYCDMTLLSCAYAGTGNVL------------KVQNLLGHCAQHHEKGEAYQGPA 634 (813)
Q Consensus 580 ~i~~---------L~~----~~~p~~r~~~~~~~glAyaGTGn~~------------~iq~LL~~~~~~~~d~~~vrr~A 634 (813)
+++. |.. +..|..|.-+ -+=||+.. +.+.|| ++..+ .+|.-|
T Consensus 281 vld~g~~~RLvElLs~~sa~iqtPalR~vG-------NIVTG~D~QTqviI~~G~L~a~~~lL----s~~ke--~irKEa 347 (526)
T COG5064 281 VLDVGIPGRLVELLSHESAKIQTPALRSVG-------NIVTGSDDQTQVIINCGALKAFRSLL----SSPKE--NIRKEA 347 (526)
T ss_pred HHhcCCcHHHHHHhcCccccccCHHHHhhc-------CeeecCccceehheecccHHHHHHHh----cChhh--hhhhhh
Confidence 6653 322 1234445432 23355432 333333 23333 788888
Q ss_pred HHHHHHhhccchhhHHHHHHHH--------HHHhhcCChhHHhHHHHHHhhh-ccCCCchhHHHHHHHhhcCCchHHHHH
Q 003521 635 VLGIAMVAMAEELGLEMAIRSL--------EHLLQYGEQNIRRAVPLALGLL-CISNPKVNVMDTLSRLSHDTDSEVAMA 705 (813)
Q Consensus 635 vlglalI~~~~~~g~e~~~~~l--------~~L~~~~~~~VR~g~~lALGL~-~aGt~~~~aid~L~~l~~D~d~~Vr~~ 705 (813)
.--|.-|..|+. +++..++ -||+.+++-.+|.-+|.|+.=+ +-|.+.+++|..| |.|+
T Consensus 348 CWTiSNITAGnt---eqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryL----------v~qG 414 (526)
T COG5064 348 CWTISNITAGNT---EQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYL----------VSQG 414 (526)
T ss_pred heeecccccCCH---HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHH----------HHcc
Confidence 888888888886 6655443 4788889999999999998754 4555666665443 4566
Q ss_pred HHHHHHHHcCCCCc
Q 003521 706 AVISLGLIGSGTNN 719 (813)
Q Consensus 706 AiiAlGlV~aGt~n 719 (813)
+|=.|.=.+.+..|
T Consensus 415 ~IkpLc~~L~~~dN 428 (526)
T COG5064 415 FIKPLCDLLDVVDN 428 (526)
T ss_pred chhHHHHHHhccCc
Confidence 66677666666665
No 46
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=92.86 E-value=11 Score=44.43 Aligned_cols=162 Identities=17% Similarity=0.170 Sum_probs=84.5
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHhhcCCC-HHHHHHHHHHHHHHh-ccCCCHHHHHHHHHhcc----C--CCCchhHHH
Q 003521 449 LLGVGIVNCGIRNDCDPALALLSEYVGRED-ACIRIGAIMGLGISY-AGTQNDQIRHKLSTILN----D--AKSPLDVIA 520 (813)
Q Consensus 449 llaLGli~~g~~~e~d~~~~lL~~~L~~~~-~~v~~gA~lGLGl~y-~Gs~~e~i~e~L~~~L~----d--~~~~~e~~~ 520 (813)
.=|+|+.+.-.+.+. -++.-|.+++..+. -.-+++-+++.-.+- .=-.|.+....+.|.|. | ..+.+|+++
T Consensus 208 YHalGlLyq~kr~dk-ma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar 286 (898)
T COG5240 208 YHALGLLYQSKRTDK-MAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAAR 286 (898)
T ss_pred HHHHHHHHHHhcccH-HHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHH
Confidence 346777776554431 23444455554432 122233333222211 11246678888888885 2 225567532
Q ss_pred HHHHHHhhHhcCCCCHHHHHHHHHHHhccCccccCchhHHHHHHH----HHHhhcCChhhHHHHHHHhhhhhhh-hhhhh
Q 003521 521 FSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLG----LGLLYLGKQESVEATAEVSKTFNEK-IRKYC 595 (813)
Q Consensus 521 ~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~lg----lgLl~lG~~e~~~~~i~~L~~~~~p-~~r~~ 595 (813)
+..++..=++|+..-+.+-.-++.+... +....||.++- ++..+-.+-..|..-+|.|..+.+. |.-|+
T Consensus 287 -~v~~~~~~nv~~~~~~~~vs~L~~fL~s-----~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyA 360 (898)
T COG5240 287 -AVCALSEENVGSQFVDQTVSSLRTFLKS-----TRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYA 360 (898)
T ss_pred -HHHHHHHhccCHHHHHHHHHHHHHHHhc-----chHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHH
Confidence 3345555566766544433334444322 34466888872 3444433334566667777665443 33343
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHhhhcc
Q 003521 596 DMTLLSCAYAGTGNVLKVQNLLGHCAQ 622 (813)
Q Consensus 596 ~~~~~glAyaGTGn~~~iq~LL~~~~~ 622 (813)
+. ....||+.+.|.+|.....+
T Consensus 361 -IT----tLLKTGt~e~idrLv~~I~s 382 (898)
T COG5240 361 -IT----TLLKTGTEETIDRLVNLIPS 382 (898)
T ss_pred -HH----HHHHcCchhhHHHHHHHHHH
Confidence 22 23689999999888765543
No 47
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=92.60 E-value=0.72 Score=41.90 Aligned_cols=98 Identities=14% Similarity=0.201 Sum_probs=61.1
Q ss_pred HHHHHhhhcccCCCCcchhhHHHHHHHHhhccchhhHHH-----HHHHHHHHhhcCChhHHhHHHHHHhhhccCCCch--
Q 003521 613 VQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEM-----AIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV-- 685 (813)
Q Consensus 613 iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e~-----~~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~~~-- 685 (813)
++.|+.+..+. +. .++..++.+++-++.+.|..... +.+.+-.++.+.++.+|..++.+|+-++.+.+..
T Consensus 9 i~~l~~~l~~~-~~--~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 9 LPALVSLLSSS-DE--NVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred hHHHHHHHHcC-CH--HHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 44444444332 22 67888888888887764422221 2233334556678888888888888887665321
Q ss_pred -----hHHHHHHHhhcCCchHHHHHHHHHHHHH
Q 003521 686 -----NVMDTLSRLSHDTDSEVAMAAVISLGLI 713 (813)
Q Consensus 686 -----~aid~L~~l~~D~d~~Vr~~AiiAlGlV 713 (813)
.++..|.++.++.+..++..|+.+++-+
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 2355666677777778888777776543
No 48
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.01 E-value=7.8 Score=47.14 Aligned_cols=273 Identities=13% Similarity=0.100 Sum_probs=136.5
Q ss_pred HHhHhhhhcCCChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCHH-H-HHHHHH
Q 003521 430 LAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQ-I-RHKLST 507 (813)
Q Consensus 430 l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~e~-i-~e~L~~ 507 (813)
+..|+.++.+..+.+--=|..++--..+-..++.-|+...|+.+++++....|..|..-|--+.+-+...- . --.|-+
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~ 326 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLES 326 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHh
Confidence 33445555544444433333333333333334445788999999999999999999998887765433210 0 012334
Q ss_pred hccCCCCchhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhcc-CccccCchhH-HHHHHHHHHhhcCChhhHHHHHHHhh
Q 003521 508 ILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDR-SESELGEPLT-RLIPLGLGLLYLGKQESVEATAEVSK 585 (813)
Q Consensus 508 ~L~d~~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~-~~~~l~e~~~-r~~~lglgLl~lG~~e~~~~~i~~L~ 585 (813)
.+.|++- - .|.+|+-.. +-||+++-++.|++..-.- ++....-|++ -=+..++.+.|-.+.......+..+.
T Consensus 327 lItd~Nr--s---Iat~AITtL-LKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~L 400 (865)
T KOG1078|consen 327 LITDSNR--S---IATLAITTL-LKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNML 400 (865)
T ss_pred hhccccc--c---hhHHHHHHH-HHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 4455422 1 355666654 5678888888887754321 2221011111 11111333333222221111111111
Q ss_pred hhhhhhhhhhhHHHHHHHHhcC-CCHHHHHHHHhhhcccCCCCcchhhHHHHHHHHh-----hccchhhHHHHHHHHHHH
Q 003521 586 TFNEKIRKYCDMTLLSCAYAGT-GNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMV-----AMAEELGLEMAIRSLEHL 659 (813)
Q Consensus 586 ~~~~p~~r~~~~~~~glAyaGT-Gn~~~iq~LL~~~~~~~~d~~~vrr~AvlglalI-----~~~~~~g~e~~~~~l~~L 659 (813)
..+ --..|-...+..+.-+-. ....+-..|.|.|. -.+|. ..+..++-=+.++ -..+| ..-.|.+-..
T Consensus 401 r~e-Gg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCe-fIEDc-e~~~i~~rILhlLG~EgP~a~~P---skyir~iyNR 474 (865)
T KOG1078|consen 401 REE-GGFEFKRAIVDAIIDIIEENPDSKERGLEHLCE-FIEDC-EFTQIAVRILHLLGKEGPKAPNP---SKYIRFIYNR 474 (865)
T ss_pred Hhc-cCchHHHHHHHHHHHHHHhCcchhhHHHHHHHH-HHHhc-cchHHHHHHHHHHhccCCCCCCc---chhhHHHhhh
Confidence 110 000111111111100000 11112222333332 12211 1222222222222 22333 3344555455
Q ss_pred hhcCChhHHhHHHHHHhhhccCC--CchhHHHHHHHhhcCCchHHHHHHHHHHHHHc
Q 003521 660 LQYGEQNIRRAVPLALGLLCISN--PKVNVMDTLSRLSHDTDSEVAMAAVISLGLIG 714 (813)
Q Consensus 660 ~~~~~~~VR~g~~lALGL~~aGt--~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~ 714 (813)
.+-.|++||.++--||.=..++. ..+.+.-+|.+...|+|+.||-.|-+++-..-
T Consensus 475 viLEn~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 475 VILENAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 56679999999999998887654 45678889999999999999999999998776
No 49
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.47 E-value=1.5 Score=51.42 Aligned_cols=168 Identities=19% Similarity=0.208 Sum_probs=102.0
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHHHhcCCCHH---------HHHHHHhhhcccCCCCcchhhHHHHHHHHhhccchh
Q 003521 577 VEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVL---------KVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEEL 647 (813)
Q Consensus 577 ~~~~i~~L~~~~~p~~r~~~~~~~glAyaGTGn~~---------~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~ 647 (813)
++.+++.|.+.++|-.++-+++++ .++.+|+.. +|-.+.+...+ .++ +|+.-|+.+||=|+-..|.
T Consensus 111 v~~lV~~l~~~~~~~lq~eAAWaL--TnIAsgtse~T~~vv~agavp~fi~Ll~s-~~~--~v~eQavWALgNIagds~~ 185 (514)
T KOG0166|consen 111 VPRLVEFLSRDDNPTLQFEAAWAL--TNIASGTSEQTKVVVDAGAVPIFIQLLSS-PSA--DVREQAVWALGNIAGDSPD 185 (514)
T ss_pred HHHHHHHHccCCChhHHHHHHHHH--HHHhcCchhhccccccCCchHHHHHHhcC-CcH--HHHHHHHHHHhccccCChH
Confidence 455666666666666666555543 344444322 22334444433 344 8999999999999854432
Q ss_pred hHHHH------HHHHHHHhhcCChhHHhHHHHHHhhhccCC-Cchh------HHHHHHHhhcCCchHHHHHHHHHHHHHc
Q 003521 648 GLEMA------IRSLEHLLQYGEQNIRRAVPLALGLLCISN-PKVN------VMDTLSRLSHDTDSEVAMAAVISLGLIG 714 (813)
Q Consensus 648 g~e~~------~~~l~~L~~~~~~~VR~g~~lALGL~~aGt-~~~~------aid~L~~l~~D~d~~Vr~~AiiAlGlV~ 714 (813)
-.+-+ ..++..+.....-.+.+.+..+|--+|-|. |.+. ++..|.++.++.|..|...|.-|+.-+.
T Consensus 186 ~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 186 CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLT 265 (514)
T ss_pred HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 11111 112222222222257888999999999887 5443 5567888899999999999999999999
Q ss_pred CCCCc-----------hHHHHHHHHHhhhhccChhhHHHHHHHHhhhhcCCC
Q 003521 715 SGTNN-----------ARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKG 755 (813)
Q Consensus 715 aGt~n-----------~rv~~~Lr~l~~~~~~d~~~~f~~~lAqGll~~G~g 755 (813)
-|+|+ ||+..+|.. .++.++--+--|.|=+-.|..
T Consensus 266 dg~ne~iq~vi~~gvv~~LV~lL~~------~~~~v~~PaLRaiGNIvtG~d 311 (514)
T KOG0166|consen 266 DGSNEKIQMVIDAGVVPRLVDLLGH------SSPKVVTPALRAIGNIVTGSD 311 (514)
T ss_pred cCChHHHHHHHHccchHHHHHHHcC------CCcccccHHHhhccceeeccH
Confidence 99985 455555544 344444444445554444433
No 50
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=90.57 E-value=0.99 Score=55.09 Aligned_cols=87 Identities=25% Similarity=0.349 Sum_probs=71.1
Q ss_pred cchhhHHHHHHHHhhccchhhHHHHHHHHHHHhhcCChhHHhHHHHHHhhhc-cCCCc---hhHHHHHHHhhcCCchHHH
Q 003521 628 EAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLC-ISNPK---VNVMDTLSRLSHDTDSEVA 703 (813)
Q Consensus 628 ~~vrr~AvlglalI~~~~~~g~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~-aGt~~---~~aid~L~~l~~D~d~~Vr 703 (813)
+.+|..|.=.++.+-.++=+ +.+...+..+.++.+|.||+.|++|++=+| .+.-- .-.++.|.-++.|+|+.|-
T Consensus 106 ~~iR~~AlR~ls~l~~~el~--~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi 183 (757)
T COG5096 106 EEIRGFALRTLSLLRVKELL--GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVI 183 (757)
T ss_pred HHHHHHHHHHHHhcChHHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHH
Confidence 48888888888888666554 677788888899999999999999999888 33221 1256788889999999999
Q ss_pred HHHHHHHHHHcCC
Q 003521 704 MAAVISLGLIGSG 716 (813)
Q Consensus 704 ~~AiiAlGlV~aG 716 (813)
.+|++++..+.-.
T Consensus 184 ~nAl~sl~~i~~e 196 (757)
T COG5096 184 ANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHhchh
Confidence 9999999999766
No 51
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=90.55 E-value=6.5 Score=47.04 Aligned_cols=197 Identities=16% Similarity=0.138 Sum_probs=108.8
Q ss_pred ChhhHHHHHHHhhhhhhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhcccCCCCcchhhHHHHHHHHhhccchhhHHHH
Q 003521 573 KQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMA 652 (813)
Q Consensus 573 ~~e~~~~~i~~L~~~~~p~~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e~~ 652 (813)
+.+....+.+.+.. .. ...-..+..+++.+||+. +++-|.+......-. ...++.++..++-...+|. +.+
T Consensus 324 ~~e~l~~l~~~~~~-~~--~~~r~~~~Dal~~~GT~~--a~~~i~~~i~~~~~~--~~ea~~~~~~~~~~~~~Pt--~~~ 394 (574)
T smart00638 324 SEEQLEQLWRQLYE-KK--KKARRIFLDAVAQAGTPP--ALKFIKQWIKNKKIT--PLEAAQLLAVLPHTARYPT--EEI 394 (574)
T ss_pred CHHHHHHHHHHHHh-CC--HHHHHHHHHHHHhcCCHH--HHHHHHHHHHcCCCC--HHHHHHHHHHHHHhhhcCC--HHH
Confidence 44555555555433 11 223356788899999986 556666665553322 3344444444444445663 666
Q ss_pred HHHHHHHhhcC----ChhHHhHHHHHHhh----hccCCCc------hhHHHHHHH----hhcCCchHHHHHHHHHHHHHc
Q 003521 653 IRSLEHLLQYG----EQNIRRAVPLALGL----LCISNPK------VNVMDTLSR----LSHDTDSEVAMAAVISLGLIG 714 (813)
Q Consensus 653 ~~~l~~L~~~~----~~~VR~g~~lALGL----~~aGt~~------~~aid~L~~----l~~D~d~~Vr~~AiiAlGlV~ 714 (813)
.+.+..|+++. ++.+|.++.+++|- .|..++. .+.++.|.. ...+.+...++.++-|||=+|
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g 474 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG 474 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence 66666666653 68899999999995 3444433 233333332 223455666777888888554
Q ss_pred CCCCchHHHHHHHHHhhhhccChhhHHHHHHHHhhh---hcCCCcccccccCCCCCCCChHHHHHHHHHH
Q 003521 715 SGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLV---HMGKGLLTLNPYHSDRFLLSPTALAGIVTTL 781 (813)
Q Consensus 715 aGt~n~rv~~~Lr~l~~~~~~d~~~~f~~~lAqGll---~~G~g~~tlsp~~sd~~~~~~~a~~gL~~~l 781 (813)
....-..+..++. .-....+..|..+..|+--+ +--+-.-.+-|.+.|++.-....+++.++++
T Consensus 475 ~~~~i~~l~~~l~---~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 475 HPSSIKVLEPYLE---GAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred ChhHHHHHHHhcC---CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 4333223222222 11122456788888887732 2222222355555676666666777766654
No 52
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=90.53 E-value=4.2 Score=48.98 Aligned_cols=210 Identities=17% Similarity=0.209 Sum_probs=118.6
Q ss_pred chhHHHHHHHhhccCCCChHHHHHhhhccCCCCcCcchhHHHHhHHHHHHHHHHhcccC-CccccccCCCCCCCCCCCcc
Q 003521 324 SEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFG-QDKLMTVPSDASSGGSSGNW 402 (813)
Q Consensus 324 ~~~~~~~~~~l~i~~~k~~e~iyK~~l~~~r~~~~~~~dsa~~~la~~~~na~vnaG~~-~D~~l~~~~~~~~~~~~~~w 402 (813)
...|..+.+.+..++-.....+|+...... .....-..|..|+..+||. +-+++.. |
T Consensus 346 ~~~f~~Lv~~lr~l~~~~L~~l~~~~~~~~----------~~~~~r~~~lDal~~aGT~~av~~i~~------------~ 403 (618)
T PF01347_consen 346 LSKFSRLVRLLRTLSYEDLEELYKQLKSKS----------KKEQARKIFLDALPQAGTNPAVKFIKD------------L 403 (618)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHHHHTTS-------------HHHHHHHHHHHHHH-SHHHHHHHHH------------H
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhc----------cHHHHHHHHHHHHHHcCCHHHHHHHHH------------H
Confidence 345888888888888888888887653310 1122235788999999998 5555543 6
Q ss_pred ccccchhh--HHHHHHHhhhhcccccchhHHhHhhhhc----CCChhhHHHHHHHHHHhhcCCCCC--------------
Q 003521 403 LFKNKEHG--KMSAAASLGMILLWDVDSGLAQIDKYFH----STDNHVIAGALLGVGIVNCGIRND-------------- 462 (813)
Q Consensus 403 l~k~~~~~--k~sA~aslGlI~~~~~~~~l~~l~~yL~----s~~~~~k~GAllaLGli~~g~~~e-------------- 462 (813)
|.+.+--. -.....++...-.--..+-+..+.+.+. ..+.+++..|++++|-+.......
T Consensus 404 I~~~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~ 483 (618)
T PF01347_consen 404 IKSKKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCI 483 (618)
T ss_dssp HHTT-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS-
T ss_pred HHcCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhh
Confidence 66643222 2222333333221122223333333332 356789999999998764321111
Q ss_pred hhhHHHHHHHhhc----CCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHhccCC-CCchhHHHHHHHHHhhHhcCCCCHH
Q 003521 463 CDPALALLSEYVG----REDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDA-KSPLDVIAFSAISLGLIYVGSCNEE 537 (813)
Q Consensus 463 ~d~~~~lL~~~L~----~~~~~v~~gA~lGLGl~y~Gs~~e~i~e~L~~~L~d~-~~~~e~~~~AaLaLGLi~lGs~~~e 537 (813)
.+.+...|...+. ..+...+..++-|||= +| .+.+...|.|++.+. ..+..+..+|..||..+ .-.+..+
T Consensus 484 ~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN--~g--~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~-~~~~~~~ 558 (618)
T PF01347_consen 484 IEKYVPYLEQELKEAVSRGDEEEKIVYLKALGN--LG--HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRL-AKHCPEK 558 (618)
T ss_dssp -GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HT---GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTG-GGT-HHH
T ss_pred HHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhc--cC--CchhhHHHHhHhhhccccchHHHHHHHHHHHHH-hhcCcHH
Confidence 1123334444443 4566788899999996 44 357999999999855 56677777888899865 4445567
Q ss_pred HHHHHHHHHhccCccccCchhHHHHHH
Q 003521 538 VAQAIIFALMDRSESELGEPLTRLIPL 564 (813)
Q Consensus 538 ~~e~ll~~L~~~~~~~l~e~~~r~~~l 564 (813)
+.+.++.++.+..+ +.=+|.+|+
T Consensus 559 v~~~l~~I~~n~~e----~~EvRiaA~ 581 (618)
T PF01347_consen 559 VREILLPIFMNTTE----DPEVRIAAY 581 (618)
T ss_dssp HHHHHHHHHH-TTS-----HHHHHHHH
T ss_pred HHHHHHHHhcCCCC----ChhHHHHHH
Confidence 77888887765422 223676664
No 53
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=89.86 E-value=5 Score=41.68 Aligned_cols=66 Identities=21% Similarity=0.185 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhcCChhHHhHHHHHHhhhccCCC------c-----hhHHHHHHHhhcCCchHHHHHHHHHHHHHcCC
Q 003521 651 MAIRSLEHLLQYGEQNIRRAVPLALGLLCISNP------K-----VNVMDTLSRLSHDTDSEVAMAAVISLGLIGSG 716 (813)
Q Consensus 651 ~~~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~------~-----~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aG 716 (813)
.....+.....+.+|.+|..++-.+..+.-..| + ..++..+.++..|++..||..|.-++..+.-.
T Consensus 131 ~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 131 ILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 337778888888999999999988877765555 1 34677888999999999999998888777443
No 54
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=89.82 E-value=19 Score=39.82 Aligned_cols=51 Identities=27% Similarity=0.290 Sum_probs=36.9
Q ss_pred chhhHHHHHHHHhhccchhh-----HHHHHHHHHHHhhcCChhHHhHHHHHHhhhc
Q 003521 629 AYQGPAVLGIAMVAMAEELG-----LEMAIRSLEHLLQYGEQNIRRAVPLALGLLC 679 (813)
Q Consensus 629 ~vrr~AvlglalI~~~~~~g-----~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~ 679 (813)
.+..+|+-+-||+..--|.+ .+.....|..|+++.+..||.++.-+++++|
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 57788888888887554421 1233444556777889999999999999886
No 55
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=89.66 E-value=57 Score=40.99 Aligned_cols=285 Identities=19% Similarity=0.174 Sum_probs=147.4
Q ss_pred CChhhHHHHHHHHHHhhcCCC----CChhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCH-------HHHHHHHHh
Q 003521 440 TDNHVIAGALLGVGIVNCGIR----NDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQND-------QIRHKLSTI 508 (813)
Q Consensus 440 ~~~~~k~GAllaLGli~~g~~----~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~e-------~i~e~L~~~ 508 (813)
.+..+|-.|+-.+|.+-+.-. ++-.+.+..|.+-+ .+++.|..|+=++-++++..-+= +++..|...
T Consensus 582 ~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl--~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~f 659 (1233)
T KOG1824|consen 582 SDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERL--GNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASF 659 (1233)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH--hchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHH
Confidence 466788888777776654322 12123444444444 35789999999999987654432 233333333
Q ss_pred ccCC--CCchhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhcc-CccccCchhHHHHHHHHHHhhcCChhh----HHHHH
Q 003521 509 LNDA--KSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDR-SESELGEPLTRLIPLGLGLLYLGKQES----VEATA 581 (813)
Q Consensus 509 L~d~--~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~-~~~~l~e~~~r~~~lglgLl~lG~~e~----~~~~i 581 (813)
+... +.-.+ ...|...|--.+.++...+.++.++..+-.- .++.+| ....+.--+..++.+.... -+.++
T Consensus 660 lrK~~r~lr~~-~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlh--vt~~a~~~L~tl~~~~ps~l~~~~~~iL 736 (1233)
T KOG1824|consen 660 LRKNQRALRLA-TLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLH--VTQLAVAFLTTLAIIQPSSLLKISNPIL 736 (1233)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHH--HHHHHHHHHHHHHhcccHHHHHHhhhhH
Confidence 3211 01111 2234445666677777778777777654321 223221 1111111223333333321 12233
Q ss_pred HHhhh-hhhhhhhhhh---HHHHHHHHhcCCCHHH-HHHHHhhhcccCCCCc--chhhHHHHHH-----HHhhccchhhH
Q 003521 582 EVSKT-FNEKIRKYCD---MTLLSCAYAGTGNVLK-VQNLLGHCAQHHEKGE--AYQGPAVLGI-----AMVAMAEELGL 649 (813)
Q Consensus 582 ~~L~~-~~~p~~r~~~---~~~~glAyaGTGn~~~-iq~LL~~~~~~~~d~~--~vrr~Avlgl-----alI~~~~~~g~ 649 (813)
+.+.+ ...|...-++ ++-.=-|..+|++... +..|+..+...+.+.. -+.+-|-.+| +++..-.+.+.
T Consensus 737 ~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~ 816 (1233)
T KOG1824|consen 737 DEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSK 816 (1233)
T ss_pred HHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccch
Confidence 32221 2334332211 1111123455554432 5555555443333210 1222222222 22222222233
Q ss_pred HHHHHHHHHHhhc-CChhHHhHHHHHHhhhccC---CCchhHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHH
Q 003521 650 EMAIRSLEHLLQY-GEQNIRRAVPLALGLLCIS---NPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGM 725 (813)
Q Consensus 650 e~~~~~l~~L~~~-~~~~VR~g~~lALGL~~aG---t~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~ 725 (813)
.-+.+++..+... .+..+|--+-+.+|-+.=+ +|.++.-+++-...+.|..+|+-+|-+|||-+..|+-+.=+.-+
T Consensus 817 s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfi 896 (1233)
T KOG1824|consen 817 SLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFI 896 (1233)
T ss_pred hHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHH
Confidence 4556666665532 3567899999999987643 56677777777777888999999999999999999876444444
Q ss_pred HHHH
Q 003521 726 LRNL 729 (813)
Q Consensus 726 Lr~l 729 (813)
|.|+
T Consensus 897 l~qi 900 (1233)
T KOG1824|consen 897 LEQI 900 (1233)
T ss_pred HHHH
Confidence 4443
No 56
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.66 E-value=30 Score=42.51 Aligned_cols=95 Identities=15% Similarity=0.175 Sum_probs=65.2
Q ss_pred HhHhhhhcCCChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC--HHHHHHHHHh
Q 003521 431 AQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN--DQIRHKLSTI 508 (813)
Q Consensus 431 ~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~--e~i~e~L~~~ 508 (813)
+.+.+-|+.+++-+|+.||-.+.-|.-..... -++...++...+.+++||..|+.++--.|---.+ .++.+.+..+
T Consensus 111 ntfQk~L~DpN~LiRasALRvlSsIRvp~IaP--I~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~L 188 (968)
T KOG1060|consen 111 NTFQKALKDPNQLIRASALRVLSSIRVPMIAP--IMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKL 188 (968)
T ss_pred HHHHhhhcCCcHHHHHHHHHHHHhcchhhHHH--HHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHH
Confidence 33445567788999999999988776543322 1445556778889999999999999988853322 3566777777
Q ss_pred ccCCCCchhHHHHHHHHHhhH
Q 003521 509 LNDAKSPLDVIAFSAISLGLI 529 (813)
Q Consensus 509 L~d~~~~~e~~~~AaLaLGLi 529 (813)
|.|.+ .-|...|.+|.--|
T Consensus 189 LaD~s--plVvgsAv~AF~ev 207 (968)
T KOG1060|consen 189 LADRS--PLVVGSAVMAFEEV 207 (968)
T ss_pred hcCCC--CcchhHHHHHHHHh
Confidence 77763 34445666666554
No 57
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=89.65 E-value=1.8 Score=52.84 Aligned_cols=61 Identities=21% Similarity=0.271 Sum_probs=52.8
Q ss_pred HHHHHHhhcCChhHHhHHHHHHhhhccCCCchhHHHHHHHhhcCCchHHHHHHHHHHHHHc
Q 003521 654 RSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIG 714 (813)
Q Consensus 654 ~~l~~L~~~~~~~VR~g~~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~ 714 (813)
..|.+=+++.||.||..+.=.|+.+-.+.=...+++.+.+..+|+.+.||++|++|++=+.
T Consensus 95 Nti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly 155 (757)
T COG5096 95 NTIQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLY 155 (757)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence 4455556788999999999999999777777788889999999999999999999998776
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=89.47 E-value=45 Score=39.81 Aligned_cols=208 Identities=11% Similarity=-0.022 Sum_probs=100.1
Q ss_pred HHHHHHHHhcc-CCCCchhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCccccCchhHHHHHHHHHHhhcCChhhHH
Q 003521 500 QIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVE 578 (813)
Q Consensus 500 ~i~e~L~~~L~-d~~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~lG~~e~~~ 578 (813)
+..+.+...+. |+. ..+ +-..+|.++...++.+.+...++...+..+. . ..-...+|..+...|+-+++.
T Consensus 322 ~A~~~~~~Al~ldP~-~~~----a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~---~-~~a~~~lg~~l~~~G~~~eAi 392 (553)
T PRK12370 322 KAKEHAIKATELDHN-NPQ----ALGLLGLINTIHSEYIVGSLLFKQANLLSPI---S-ADIKYYYGWNLFMAGQLEEAL 392 (553)
T ss_pred HHHHHHHHHHhcCCC-CHH----HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---C-HHHHHHHHHHHHHCCCHHHHH
Confidence 44455555554 332 223 3445666666666655555555443332221 1 112234567777778877777
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHhcCCCH-HHHHHHHhhhcccCCCCcchhhHHHHHHHHhhccchhhHHHHHHHHH
Q 003521 579 ATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNV-LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLE 657 (813)
Q Consensus 579 ~~i~~L~~~~~p~~r~~~~~~~glAyaGTGn~-~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e~~~~~l~ 657 (813)
..++.....+...... .+..+.++.-.|+. +++..+.........+ .......+|..+...|+. +.+...+.
T Consensus 393 ~~~~~Al~l~P~~~~~--~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~--~~~~~~~la~~l~~~G~~---~eA~~~~~ 465 (553)
T PRK12370 393 QTINECLKLDPTRAAA--GITKLWITYYHTGIDDAIRLGDELRSQHLQD--NPILLSMQVMFLSLKGKH---ELARKLTK 465 (553)
T ss_pred HHHHHHHhcCCCChhh--HHHHHHHHHhccCHHHHHHHHHHHHHhcccc--CHHHHHHHHHHHHhCCCH---HHHHHHHH
Confidence 7777655543221111 11222233345653 3444333332221111 223345566666666776 67777777
Q ss_pred HHhhcCChhHHhHHHHHHhhhccCCCchhHHHHHHHhhcCCc---hHHHHHHHHHHHHHcCCCCchHHHHHHHHHhh
Q 003521 658 HLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTD---SEVAMAAVISLGLIGSGTNNARIAGMLRNLSS 731 (813)
Q Consensus 658 ~L~~~~~~~VR~g~~lALGL~~aGt~~~~aid~L~~l~~D~d---~~Vr~~AiiAlGlV~aGt~n~rv~~~Lr~l~~ 731 (813)
.+.... | -...+...++..+++.++ ++...|.++..... ...+. +.+|.+..++++-..+++++.+
T Consensus 466 ~~~~~~-~-~~~~~~~~l~~~~~~~g~-~a~~~l~~ll~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~ 534 (553)
T PRK12370 466 EISTQE-I-TGLIAVNLLYAEYCQNSE-RALPTIREFLESEQRIDNNPGL-----LPLVLVAHGEAIAEKMWNKFKN 534 (553)
T ss_pred Hhhhcc-c-hhHHHHHHHHHHHhccHH-HHHHHHHHHHHHhhHhhcCchH-----HHHHHHHHhhhHHHHHHHHhhc
Confidence 665432 2 133334445555555553 55555555432111 11111 4555555566666666666544
No 59
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.04 E-value=20 Score=40.39 Aligned_cols=86 Identities=14% Similarity=0.132 Sum_probs=53.8
Q ss_pred hhhHHHHHHHHHHhhcCCCCCh-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCHH--------HHHHHHHhccCC
Q 003521 442 NHVIAGALLGVGIVNCGIRNDC-DPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQ--------IRHKLSTILNDA 512 (813)
Q Consensus 442 ~~~k~GAllaLGli~~g~~~e~-d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~e~--------i~e~L~~~L~d~ 512 (813)
.+--.||++++--++-+.+.-. --.+.+|.+.++..+.-+|.-++-++|.+.+.-.+.. ++..|..++.|+
T Consensus 184 qrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~ 263 (550)
T KOG4224|consen 184 QRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDG 263 (550)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCC
Confidence 4555677777654433221000 0034567777888888899999999999877654432 444455544444
Q ss_pred CCchhHHHHHHHHHhhH
Q 003521 513 KSPLDVIAFSAISLGLI 529 (813)
Q Consensus 513 ~~~~e~~~~AaLaLGLi 529 (813)
+..+.+.|++|||-+
T Consensus 264 --s~kvkcqA~lALrnl 278 (550)
T KOG4224|consen 264 --SDKVKCQAGLALRNL 278 (550)
T ss_pred --ChHHHHHHHHHHhhh
Confidence 445666899999977
No 60
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.03 E-value=3.6 Score=49.56 Aligned_cols=203 Identities=13% Similarity=0.074 Sum_probs=102.4
Q ss_pred cCCCCHHHHHHHHHHHhccCccccCchhHHHHHHHHHHhhcCChhhHHHHHHHhhhhhhhhhhhhhHHHHHHHHhc-CCC
Q 003521 531 VGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAG-TGN 609 (813)
Q Consensus 531 lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~lG~~e~~~~~i~~L~~~~~p~~r~~~~~~~glAyaG-TGn 609 (813)
+...+.+-+..+.+.+.... +....|-. +-=+|...|+.+.+..+.+.+...+-+-... .-+..++++.- .-+
T Consensus 356 lr~l~~~~L~~l~~~~~~~~----~~~~~r~~-~lDal~~aGT~~av~~i~~~I~~~~~~~~ea-~~~l~~l~~~~~~Pt 429 (618)
T PF01347_consen 356 LRTLSYEDLEELYKQLKSKS----KKEQARKI-FLDALPQAGTNPAVKFIKDLIKSKKLTDDEA-AQLLASLPFHVRRPT 429 (618)
T ss_dssp HTTS-HHHHHHHHHHHTTS-------HHHHHH-HHHHHHHH-SHHHHHHHHHHHHTT-S-HHHH-HHHHHHHHHT-----
T ss_pred HhcCCHHHHHHHHHHHHhhc----cHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHcCCCCHHHH-HHHHHHHHhhcCCCC
Confidence 34556666666665543210 11122211 1224556678888887777776643333332 23334444444 777
Q ss_pred HHHHHHHHhhhcccCC-CCcchhhHHHHHHHHhhccchhh---------------HHHHHHHHHHH---hhcCChhHHhH
Q 003521 610 VLKVQNLLGHCAQHHE-KGEAYQGPAVLGIAMVAMAEELG---------------LEMAIRSLEHL---LQYGEQNIRRA 670 (813)
Q Consensus 610 ~~~iq~LL~~~~~~~~-d~~~vrr~AvlglalI~~~~~~g---------------~e~~~~~l~~L---~~~~~~~VR~g 670 (813)
.+.++.|+.+|..... ..+.++..|++++|-+..+--.. .+-+..+...| ...++..-+..
T Consensus 430 ~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 509 (618)
T PF01347_consen 430 EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIV 509 (618)
T ss_dssp HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHH
Confidence 7778877777754321 11256777888877654321110 01122222222 34556677788
Q ss_pred HHHHHhhhccCCCchhHHHHHHHhhcCC---chHHHHHHHHHHHHHcCCCCchHHHHHHHHHhhhhccChhhHHHHH
Q 003521 671 VPLALGLLCISNPKVNVMDTLSRLSHDT---DSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVR 744 (813)
Q Consensus 671 ~~lALGL~~aGt~~~~aid~L~~l~~D~---d~~Vr~~AiiAlGlV~aGt~n~rv~~~Lr~l~~~~~~d~~~~f~~~ 744 (813)
+.-|||=+ |.+.+++.|.++..+. ...+|..||-|+.-+. -....++...+-.+.....+++..|.++-
T Consensus 510 ~LkaLgN~----g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~-~~~~~~v~~~l~~I~~n~~e~~EvRiaA~ 581 (618)
T PF01347_consen 510 YLKALGNL----GHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLA-KHCPEKVREILLPIFMNTTEDPEVRIAAY 581 (618)
T ss_dssp HHHHHHHH----T-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGG-GT-HHHHHHHHHHHHH-TTS-HHHHHHHH
T ss_pred HHHHhhcc----CCchhhHHHHhHhhhccccchHHHHHHHHHHHHHh-hcCcHHHHHHHHHHhcCCCCChhHHHHHH
Confidence 88888855 4567888888887665 6778888888888552 22233555555444443345555555553
No 61
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=87.10 E-value=50 Score=39.33 Aligned_cols=270 Identities=17% Similarity=0.148 Sum_probs=134.0
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhcc------CCCHHHHHHHHHhccCCCCchhHHH
Q 003521 447 GALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAG------TQNDQIRHKLSTILNDAKSPLDVIA 520 (813)
Q Consensus 447 GAllaLGli~~g~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~G------s~~e~i~e~L~~~L~d~~~~~e~~~ 520 (813)
-++-++..=+-|. ...+++...|..+|.++....|.+|+=-|.-..+- .||.++-.+ +.|.+-+
T Consensus 286 r~v~~~~~~nv~~-~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsL----Isd~Nr~----- 355 (898)
T COG5240 286 RAVCALSEENVGS-QFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESL----ISDENRT----- 355 (898)
T ss_pred HHHHHHHHhccCH-HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHH----hhccccc-----
Confidence 3444444444232 23468889999999999889999888776655443 445444332 2343222
Q ss_pred HHHHHHhhHhcCCCCHHHHHHHHHHHhcc-CccccCchhH-HHHHHHHHHhhcCChhhH-HHHHHHhhhhhh-hhhhhh-
Q 003521 521 FSAISLGLIYVGSCNEEVAQAIIFALMDR-SESELGEPLT-RLIPLGLGLLYLGKQESV-EATAEVSKTFNE-KIRKYC- 595 (813)
Q Consensus 521 ~AaLaLGLi~lGs~~~e~~e~ll~~L~~~-~~~~l~e~~~-r~~~lglgLl~lG~~e~~-~~~i~~L~~~~~-p~~r~~- 595 (813)
.+.+|+--+ +-||+++-++.++..+..- ++..-.=|++ -=+.-.|.|.|-.++... +=+.+.|..... .+-|+.
T Consensus 356 IstyAITtL-LKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~V 434 (898)
T COG5240 356 ISTYAITTL-LKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMV 434 (898)
T ss_pred chHHHHHHH-HHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 234444432 5778889888887755321 2211011222 112225555554333221 112222222111 011110
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHhhhcccCCCCcchhhHHHHHHHHhhccchhh-----HHHHHHHHHHHhhcCChhHHhH
Q 003521 596 DMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELG-----LEMAIRSLEHLLQYGEQNIRRA 670 (813)
Q Consensus 596 ~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g-----~e~~~~~l~~L~~~~~~~VR~g 670 (813)
.++.-.+-|.--....+...|-.|..+- ..-..+|=-++++ |++.- ..-+.-+.++++- .|.+||.|
T Consensus 435 daisd~~~~~p~skEraLe~LC~fIEDc-----ey~~I~vrIL~iL--G~EgP~a~~P~~yvrhIyNR~iL-EN~ivRsa 506 (898)
T COG5240 435 DAISDAMENDPDSKERALEVLCTFIEDC-----EYHQITVRILGIL--GREGPRAKTPGKYVRHIYNRLIL-ENNIVRSA 506 (898)
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHHhhc-----chhHHHHHHHHHh--cccCCCCCCcchHHHHHHHHHHH-hhhHHHHH
Confidence 0011111111111122333333333211 1112223233333 23210 1234445555554 57899999
Q ss_pred HHHHHhhhc--cC--CCchhHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCC-c--------hHHHHHHHHHhhhhcc
Q 003521 671 VPLALGLLC--IS--NPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN-N--------ARIAGMLRNLSSYYYK 735 (813)
Q Consensus 671 ~~lALGL~~--aG--t~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~-n--------~rv~~~Lr~l~~~~~~ 735 (813)
+--||.-.. ++ +-...+...|.+..+|.|+.||-.|-|++-.+--..- . +.+..+-+.+..|+++
T Consensus 507 Av~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~da~~pl~~sd~~~dipsle~~l~~yIse 584 (898)
T COG5240 507 AVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSDACEPLFSSDELGDIPSLELELIGYISE 584 (898)
T ss_pred HHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhhhhhccccccccCCcchhHHhhheeecc
Confidence 998884321 22 2234566789999999999999999999987752211 1 2355666677777655
No 62
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.40 E-value=90 Score=38.23 Aligned_cols=247 Identities=13% Similarity=0.171 Sum_probs=136.1
Q ss_pred hhhHHHHHHHHHHhhcCCCCChhhHHHHHHH----hhcCCCHHHHHHHHHHHHHHhccCCC--HHHHHHHHHhccCCCCc
Q 003521 442 NHVIAGALLGVGIVNCGIRNDCDPALALLSE----YVGREDACIRIGAIMGLGISYAGTQN--DQIRHKLSTILNDAKSP 515 (813)
Q Consensus 442 ~~~k~GAllaLGli~~g~~~e~d~~~~lL~~----~L~~~~~~v~~gA~lGLGl~y~Gs~~--e~i~e~L~~~L~d~~~~ 515 (813)
...+.|-+.+..-+|+.+. ++-++.. -+. ++....+|.+|+ ||...+|.+ .|+...+...|..+...
T Consensus 87 ~~krigylaa~qSf~~~td-----vlmL~tn~~rkdl~-S~n~ye~giAL~-GLS~fvTpdLARDLa~Dv~tLL~sskpY 159 (877)
T KOG1059|consen 87 QQKRIGYLAASQSFHDDTD-----VLMLTTNLLRKDLN-SSNVYEVGLALS-GLSCIVTPDLARDLADDVFTLLNSSKPY 159 (877)
T ss_pred HHHHHhHHHHHHhhcCCcc-----HHHHHHHHHHHHhc-cCccchhhheec-ccccccCchhhHHHHHHHHHHHhcCchH
Confidence 4667888888888887652 3333333 333 345667777777 888888876 58888888888755333
Q ss_pred hhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCccccCchhHHHHHHHHHHhhcCChh-----hHHHHHHHhhhhhhh
Q 003521 516 LDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE-----SVEATAEVSKTFNEK 590 (813)
Q Consensus 516 ~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~lG~~e-----~~~~~i~~L~~~~~p 590 (813)
.. -=|.+.|=-||+--. |+....+.-|.+.-+. .++-+..++++.=|=...+.- -+..+++.|.+..+-
T Consensus 160 vR--KkAIl~lykvFLkYP--eAlr~~FprL~EkLeD--pDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNN 233 (877)
T KOG1059|consen 160 VR--KKAILLLYKVFLKYP--EALRPCFPRLVEKLED--PDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNN 233 (877)
T ss_pred HH--HHHHHHHHHHHHhhh--HhHhhhHHHHHHhccC--CCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCC
Confidence 32 347777778888544 8888888888776443 345555555554433332221 344555555543321
Q ss_pred -----hhhhhhHHHHHHHHhcCCCH----HHHHHHHhhhcccCCCCcch--h-hHHHHHHHHhhcc--chh-hHHHHHHH
Q 003521 591 -----IRKYCDMTLLSCAYAGTGNV----LKVQNLLGHCAQHHEKGEAY--Q-GPAVLGIAMVAMA--EEL-GLEMAIRS 655 (813)
Q Consensus 591 -----~~r~~~~~~~glAyaGTGn~----~~iq~LL~~~~~~~~d~~~v--r-r~AvlglalI~~~--~~~-g~e~~~~~ 655 (813)
+.+-.+.++. =.. +.+..|.....++.-- .+ . -..|++..+ ..| +.. ..+-|..=
T Consensus 234 WmLIKiiKLF~aLtp-------lEPRLgKKLieplt~li~sT~Am--SLlYECvNTVVa~s~-s~g~~d~~asiqLCvqK 303 (877)
T KOG1059|consen 234 WVLIKLLKLFAALTP-------LEPRLGKKLIEPITELMESTVAM--SLLYECVNTVVAVSM-SSGMSDHSASIQLCVQK 303 (877)
T ss_pred eehHHHHHHHhhccc-------cCchhhhhhhhHHHHHHHhhHHH--HHHHHHHHHheeehh-ccCCCCcHHHHHHHHHH
Confidence 1111111000 000 0111111111111000 00 0 001111111 112 221 11346666
Q ss_pred HHHHhhcCChhHHhHHHHHHhhhccCCCchhHH----HHHHHhhcCCchHHHHHHH-HHHHHH
Q 003521 656 LEHLLQYGEQNIRRAVPLALGLLCISNPKVNVM----DTLSRLSHDTDSEVAMAAV-ISLGLI 713 (813)
Q Consensus 656 l~~L~~~~~~~VR~g~~lALGL~~aGt~~~~ai----d~L~~l~~D~d~~Vr~~Ai-iAlGlV 713 (813)
+.-+.++.||+.||-+.+||+-+ +.-++.++ |+..+...|.|..+|.-|+ +-.|||
T Consensus 304 Lr~fiedsDqNLKYlgLlam~KI--~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 304 LRIFIEDSDQNLKYLGLLAMSKI--LKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred HhhhhhcCCccHHHHHHHHHHHH--hhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 77889999999999999999977 44455555 4567889999999997765 233555
No 63
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=85.72 E-value=1.3 Score=31.53 Aligned_cols=26 Identities=38% Similarity=0.447 Sum_probs=18.1
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHH
Q 003521 688 MDTLSRLSHDTDSEVAMAAVISLGLI 713 (813)
Q Consensus 688 id~L~~l~~D~d~~Vr~~AiiAlGlV 713 (813)
+..|.++.+|++..||.+|+.++|-+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i 27 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAI 27 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 45566777788888888887777765
No 64
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=85.61 E-value=7.2 Score=39.40 Aligned_cols=89 Identities=15% Similarity=0.152 Sum_probs=62.6
Q ss_pred cchhhHHHHHHHHhhccchhhHHHHHHHHHHHhhcCChhHHhHHHHHHhhhccC---CCchhHHHHHHHhhcCCchHHHH
Q 003521 628 EAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCIS---NPKVNVMDTLSRLSHDTDSEVAM 704 (813)
Q Consensus 628 ~~vrr~AvlglalI~~~~~~g~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~aG---t~~~~aid~L~~l~~D~d~~Vr~ 704 (813)
+.+|..+++++|=++.+-|.-.|.....+-..+++.+|.||+.+...+.-+-.. ......+..+-.+..|+++.||.
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~ 81 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRS 81 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHH
Confidence 378999999999777776632344444555667788999999999988865322 12233323333456899999999
Q ss_pred HHHHHHHHHcCC
Q 003521 705 AAVISLGLIGSG 716 (813)
Q Consensus 705 ~AiiAlGlV~aG 716 (813)
.|...+.-+...
T Consensus 82 ~A~~~~~e~~~~ 93 (178)
T PF12717_consen 82 LARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHHHHh
Confidence 999988888766
No 65
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=85.47 E-value=99 Score=37.87 Aligned_cols=269 Identities=12% Similarity=-0.043 Sum_probs=140.2
Q ss_pred cchhhHHHHHHHhhhhcccccchhHHhHhhhhcCCChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcCCCHHHHHHH
Q 003521 406 NKEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGA 485 (813)
Q Consensus 406 ~~~~~k~sA~aslGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~~~~v~~gA 485 (813)
..++.......+......|+.++|+..+++.+........ +...+|.++.... ..+.+...+...+.-..... .+
T Consensus 72 ~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~--a~~~la~~l~~~g-~~~~Ai~~l~~Al~l~P~~~--~a 146 (656)
T PRK15174 72 AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPE--DVLLVASVLLKSK-QYATVADLAEQAWLAFSGNS--QI 146 (656)
T ss_pred CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcH--HH
Confidence 3344444455555566789999999999988764333333 3444555443322 23457887877765322111 23
Q ss_pred HHHHHHHhccCCC-HHHHHHHHHhcc-CCCCchhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCccccCchhHHHHH
Q 003521 486 IMGLGISYAGTQN-DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIP 563 (813)
Q Consensus 486 ~lGLGl~y~Gs~~-e~i~e~L~~~L~-d~~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~ 563 (813)
...+|-++...++ ++..+.+...+. ++. +.+. -..++ .+...++.+.+...+..+....+.. .+. ....
T Consensus 147 ~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a----~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~-~~~--~~~~ 217 (656)
T PRK15174 147 FALHLRTLVLMDKELQAISLARTQAQEVPP-RGDM----IATCL-SFLNKSRLPEDHDLARALLPFFALE-RQE--SAGL 217 (656)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHH----HHHHH-HHHHcCCHHHHHHHHHHHHhcCCCc-chh--HHHH
Confidence 3445555655555 345555555543 221 2222 11122 2445566555555555444332111 111 1122
Q ss_pred HHHHHhhcCChhhHHHHHHHhhhhhhhhhhhhhHHHHHHHHhcCCCHH-----HHHHHHhhhcccCCCCcchhhHHHHHH
Q 003521 564 LGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVL-----KVQNLLGHCAQHHEKGEAYQGPAVLGI 638 (813)
Q Consensus 564 lglgLl~lG~~e~~~~~i~~L~~~~~p~~r~~~~~~~glAyaGTGn~~-----~iq~LL~~~~~~~~d~~~vrr~Avlgl 638 (813)
++..+...|+.+++...++......... ......+|.+|...|+.. ++..+-....-+. + +.+....+|.
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~p~~--~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~--~~~a~~~lg~ 292 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARGLDG--AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-D--NVRIVTLYAD 292 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-C--CHHHHHHHHH
Confidence 3556677788887777776655432211 233456788888888754 3433333332222 2 4455555666
Q ss_pred HHhhccchhhHHHHHHHHHHHhhcC--ChhHHhHHHHHHhhhccCCCc-hhHHHHHHHhh-cCCch
Q 003521 639 AMVAMAEELGLEMAIRSLEHLLQYG--EQNIRRAVPLALGLLCISNPK-VNVMDTLSRLS-HDTDS 700 (813)
Q Consensus 639 alI~~~~~~g~e~~~~~l~~L~~~~--~~~VR~g~~lALGL~~aGt~~-~~aid~L~~l~-~D~d~ 700 (813)
.+...|+. +.+...++...+.. ++.++.. +|.++...|+ .++++.+.+.. .+|+.
T Consensus 293 ~l~~~g~~---~eA~~~l~~al~l~P~~~~a~~~----La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 293 ALIRTGQN---EKAIPLLQQSLATHPDLPYVRAM----YARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHHCCCH---HHHHHHHHHHHHhCCCCHHHHHH----HHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 66666766 77777777766532 3444433 4444433443 35666776665 45553
No 66
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=85.08 E-value=1.6 Score=34.92 Aligned_cols=49 Identities=22% Similarity=0.170 Sum_probs=33.6
Q ss_pred chhhHHHHHHHHhhccchh-hHH---HHHHHHHHHhhcCChhHHhHHHHHHhh
Q 003521 629 AYQGPAVLGIAMVAMAEEL-GLE---MAIRSLEHLLQYGEQNIRRAVPLALGL 677 (813)
Q Consensus 629 ~vrr~AvlglalI~~~~~~-g~e---~~~~~l~~L~~~~~~~VR~g~~lALGL 677 (813)
.||+.|+.+||-+....+- -.. .+...+..++.+.++.||..++.|||-
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 4788899999876544431 111 233344456678889999999999984
No 67
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=84.89 E-value=36 Score=37.75 Aligned_cols=105 Identities=15% Similarity=0.136 Sum_probs=54.0
Q ss_pred CChhhHHHHHHHHHHhhcCCCCC------hhhHHHHHHHhhcCCCHHHHHH--HHHHHHHHhcc--CCCHHHHHHHHHhc
Q 003521 440 TDNHVIAGALLGVGIVNCGIRND------CDPALALLSEYVGREDACIRIG--AIMGLGISYAG--TQNDQIRHKLSTIL 509 (813)
Q Consensus 440 ~~~~~k~GAllaLGli~~g~~~e------~d~~~~lL~~~L~~~~~~v~~g--A~lGLGl~y~G--s~~e~i~e~L~~~L 509 (813)
.....|-.+|-++--+-..+.-. ..+++..+...++.....-+.- .++||=.+-.| ...+++++.+.|+|
T Consensus 55 K~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L 134 (309)
T PF05004_consen 55 KSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVL 134 (309)
T ss_pred cCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Confidence 34566667766654443322211 1123333334444443333333 33444445555 44568888777766
Q ss_pred ----cCCCCchhHHHHHHHHHhhH-hcCCCCHHHHHHHHH
Q 003521 510 ----NDAKSPLDVIAFSAISLGLI-YVGSCNEEVAQAIIF 544 (813)
Q Consensus 510 ----~d~~~~~e~~~~AaLaLGLi-~lGs~~~e~~e~ll~ 544 (813)
.|.+....+...++.+||++ |+|..+.+.++.+++
T Consensus 135 ~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~ 174 (309)
T PF05004_consen 135 KRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME 174 (309)
T ss_pred HHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH
Confidence 36544444433444477775 667777777773333
No 68
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=84.79 E-value=66 Score=35.25 Aligned_cols=270 Identities=13% Similarity=0.069 Sum_probs=121.1
Q ss_pred HHHHHHhhhhcccccchhHHhHhhhhcCCChhhHHHHHHHHHHhhcCCCCC-hhhHHHHHHHhhcCCCHHHHHHHHHHHH
Q 003521 412 MSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRND-CDPALALLSEYVGREDACIRIGAIMGLG 490 (813)
Q Consensus 412 ~sA~aslGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e-~d~~~~lL~~~L~~~~~~v~~gA~lGLG 490 (813)
.....++.....++.+++...+.+.+...........+ +++....|.... .+.+...+....... ....-+..-+|
T Consensus 45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a 121 (355)
T cd05804 45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPEN--PDYWYLLGMLA 121 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCC--CCcHHHHHHHH
Confidence 34455666677788888888877776532222222222 333333332211 111333333211111 11122222344
Q ss_pred HHhccCCC-HHHHHHHHHhcc-CCCCchhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCccccCchhH-HHHHHHHH
Q 003521 491 ISYAGTQN-DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLT-RLIPLGLG 567 (813)
Q Consensus 491 l~y~Gs~~-e~i~e~L~~~L~-d~~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~-r~~~lglg 567 (813)
.++...++ ++..+.+...+. ++. . . .+...+|.++...+..+.....++......+.. ..... -...++..
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p~-~-~---~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~-~~~~~~~~~~la~~ 195 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNPD-D-A---WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS-SMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC-C-c---HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC-cchhHHHHHHHHHH
Confidence 44444444 456666666664 221 1 1 466788888888887665555555433221111 11111 12234555
Q ss_pred HhhcCChhhHHHHHHHhhhhhh--hhhhhh-hHHHHHHHHhcCCCHHHHHH---HHhhhcccCCCCcchhhHHHHHHHHh
Q 003521 568 LLYLGKQESVEATAEVSKTFNE--KIRKYC-DMTLLSCAYAGTGNVLKVQN---LLGHCAQHHEKGEAYQGPAVLGIAMV 641 (813)
Q Consensus 568 Ll~lG~~e~~~~~i~~L~~~~~--p~~r~~-~~~~~glAyaGTGn~~~iq~---LL~~~~~~~~d~~~vrr~AvlglalI 641 (813)
+...|+.+.+...++....... +..... .....-.-+.-.|.....++ +.+.......+..........+.+++
T Consensus 196 ~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 275 (355)
T cd05804 196 YLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALA 275 (355)
T ss_pred HHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHh
Confidence 6666888888888877542221 111110 00011112222333222222 33333222111001122234566666
Q ss_pred hccchhhHHHHHHHHHHHhhcCC-------hhHHhHHHHHHhhhccCCCc-hhHHHHHHH
Q 003521 642 AMAEELGLEMAIRSLEHLLQYGE-------QNIRRAVPLALGLLCISNPK-VNVMDTLSR 693 (813)
Q Consensus 642 ~~~~~~g~e~~~~~l~~L~~~~~-------~~VR~g~~lALGL~~aGt~~-~~aid~L~~ 693 (813)
..++. +.+.+++..+..... ...+-..++..+++....|+ .++++.|.+
T Consensus 276 ~~~~~---~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~ 332 (355)
T cd05804 276 GAGDK---DALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGP 332 (355)
T ss_pred cCCCH---HHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66665 666666666544221 22344555556665555554 344445544
No 69
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=83.77 E-value=1.2e+02 Score=37.27 Aligned_cols=279 Identities=10% Similarity=-0.022 Sum_probs=144.0
Q ss_pred hhhhcccccchhHHhHhhhhcCCChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCC
Q 003521 418 LGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQ 497 (813)
Q Consensus 418 lGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~ 497 (813)
+-..+.|+.++++..+..-+........+-..+|......|.. +.+...+...+...... ..+...+|.++...+
T Consensus 50 ~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~---~~A~~~l~~~l~~~P~~--~~a~~~la~~l~~~g 124 (656)
T PRK15174 50 IACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQP---DAVLQVVNKLLAVNVCQ--PEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCH---HHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcC
Confidence 3445678999999888877655444444444444444455543 44777777776532211 123466677666655
Q ss_pred C-HHHHHHHHHhcc-CCCCchhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCccccCchhHHHHHHHHHHhhcCChh
Q 003521 498 N-DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE 575 (813)
Q Consensus 498 ~-e~i~e~L~~~L~-d~~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~lG~~e 575 (813)
+ ++..+.+...+. ++. ..+ +...+|.++...++.+.+...+..+....+. .+-... . ...+...|+-+
T Consensus 125 ~~~~Ai~~l~~Al~l~P~-~~~----a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~---~~~a~~-~-~~~l~~~g~~~ 194 (656)
T PRK15174 125 QYATVADLAEQAWLAFSG-NSQ----IFALHLRTLVLMDKELQAISLARTQAQEVPP---RGDMIA-T-CLSFLNKSRLP 194 (656)
T ss_pred CHHHHHHHHHHHHHhCCC-cHH----HHHHHHHHHHHCCChHHHHHHHHHHHHhCCC---CHHHHH-H-HHHHHHcCCHH
Confidence 5 356666666664 332 222 4456677777777766544444433222211 111111 1 22355567777
Q ss_pred hHHHHHHHhhhhhhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhcccCCCCcchhhHHHHHHHHhhccchhh-HHHHHH
Q 003521 576 SVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELG-LEMAIR 654 (813)
Q Consensus 576 ~~~~~i~~L~~~~~p~~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g-~e~~~~ 654 (813)
++...++.+..... ..........+.++...|+.......+.-+.....+ +......+|..+...|+.-. .+.+..
T Consensus 195 eA~~~~~~~l~~~~-~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~--~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 195 EDHDLARALLPFFA-LERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD--GAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred HHHHHHHHHHhcCC-CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 77777776544321 111112234566788899865444433333322222 33444446666677777510 013677
Q ss_pred HHHHHhhcCChhHHhHHHHHHhhhccCCCc-hhHHHHHHHhh-cCCchHHHHHHHHHHHHHcCCCCc
Q 003521 655 SLEHLLQYGEQNIRRAVPLALGLLCISNPK-VNVMDTLSRLS-HDTDSEVAMAAVISLGLIGSGTNN 719 (813)
Q Consensus 655 ~l~~L~~~~~~~VR~g~~lALGL~~aGt~~-~~aid~L~~l~-~D~d~~Vr~~AiiAlGlV~aGt~n 719 (813)
.++........+.+ +-..+|.++...++ .+++..+.+.. .+|+.... ...+|.+....++
T Consensus 272 ~~~~Al~l~P~~~~--a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a---~~~La~~l~~~G~ 333 (656)
T PRK15174 272 HWRHALQFNSDNVR--IVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYV---RAMYARALRQVGQ 333 (656)
T ss_pred HHHHHHhhCCCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHCCC
Confidence 77776654322232 33344444444443 46677776554 46664432 2345555555443
No 70
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=82.47 E-value=3.6 Score=37.24 Aligned_cols=65 Identities=26% Similarity=0.347 Sum_probs=50.8
Q ss_pred HHHHHHHhhcCChhHHhHHHHHHhhhccCCCc-------hhHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCC
Q 003521 653 IRSLEHLLQYGEQNIRRAVPLALGLLCISNPK-------VNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN 718 (813)
Q Consensus 653 ~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~~-------~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~ 718 (813)
+.++. ++.++++.+|..+..+++-++.+++. ..+++.|.++.+|++..|+..|+.+++-+..+.+
T Consensus 10 ~~l~~-~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 10 PALVS-LLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHHH-HHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 33444 44567899999999999999876321 2566778888899999999999999999977664
No 71
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=81.62 E-value=18 Score=44.71 Aligned_cols=125 Identities=20% Similarity=0.212 Sum_probs=86.5
Q ss_pred HHHHHHHhhhcccCCCCcchhhHHHHHHHHh--hccchhhHHHHHHHHHHHhhcCChhHHhHHHHHHh----hhccCCCc
Q 003521 611 LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMV--AMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALG----LLCISNPK 684 (813)
Q Consensus 611 ~~iq~LL~~~~~~~~d~~~vrr~AvlglalI--~~~~~~g~e~~~~~l~~L~~~~~~~VR~g~~lALG----L~~aGt~~ 684 (813)
..|.++|....++ +- -+|+..+.+|.++ .+|.++-.+....++..+..+..|+||.+++-.+- ++.+..-+
T Consensus 557 ~~i~k~L~~~~q~-~y--~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~ 633 (759)
T KOG0211|consen 557 EEIPKLLAMDLQD-NY--LVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRD 633 (759)
T ss_pred HhhHHHHHHhcCc-cc--chhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHH
Confidence 3455566554332 22 4677766677764 35777777778888999999999999999987764 45566677
Q ss_pred hhHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCC-chHHHHHHHHHhhhhccChh
Q 003521 685 VNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN-NARIAGMLRNLSSYYYKDAN 738 (813)
Q Consensus 685 ~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~-n~rv~~~Lr~l~~~~~~d~~ 738 (813)
..+...|..+..|++-+||..|+.|.|.|..-.- .+.......++.+....+.+
T Consensus 634 ~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~~~~~~d~~~~~~~~a~~~~~~~ 688 (759)
T KOG0211|consen 634 EEVLPLLETLSSDQELDVRYRAILAFGSIELSRLESSLDVRDKKQLIAFLEQDSH 688 (759)
T ss_pred HHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhH
Confidence 7788888999999999999999999999864322 13334444444444333333
No 72
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.59 E-value=26 Score=45.84 Aligned_cols=158 Identities=15% Similarity=0.134 Sum_probs=94.4
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHH--HHHHhcCC------CHHHHHHHHhhhcccCCCCcchhhHHHHHHHHhhc--cch
Q 003521 577 VEATAEVSKTFNEKIRKYCDMTLL--SCAYAGTG------NVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAM--AEE 646 (813)
Q Consensus 577 ~~~~i~~L~~~~~p~~r~~~~~~~--glAyaGTG------n~~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~--~~~ 646 (813)
....++.+....+|..|.+++..+ -.-|+|+- +.++-+...|...++. +-+|-.|.=|+|+|.- +.+
T Consensus 819 ~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~d---Ef~QDvAsrGlglVYelgd~~ 895 (1702)
T KOG0915|consen 819 ILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDND---EFSQDVASRGLGLVYELGDSS 895 (1702)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccH---HHHHHHHhcCceEEEecCCch
Confidence 345667777788899998776432 34577744 2333344555554432 2688889999999852 223
Q ss_pred hhHHHHHHHHHHHhhcCCh---hHHhHHHHHHhhhc-cCCC-chhHHHHHHHhhcCC---ch--------------HHHH
Q 003521 647 LGLEMAIRSLEHLLQYGEQ---NIRRAVPLALGLLC-ISNP-KVNVMDTLSRLSHDT---DS--------------EVAM 704 (813)
Q Consensus 647 ~g~e~~~~~l~~L~~~~~~---~VR~g~~lALGL~~-aGt~-~~~aid~L~~l~~D~---d~--------------~Vr~ 704 (813)
.-.+++..+++.|+...-. ..--..-|.=|.++ .++| +..-+.-|-.+++|- |- .-|.
T Consensus 896 ~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~ 975 (1702)
T KOG0915|consen 896 LKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKK 975 (1702)
T ss_pred hHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhccc
Confidence 3346788888888863211 01112234446555 4455 667777777777663 31 1257
Q ss_pred HHHHHHHHHcCCCCc---hHHHHHHHHHhhhhccChh
Q 003521 705 AAVISLGLIGSGTNN---ARIAGMLRNLSSYYYKDAN 738 (813)
Q Consensus 705 ~AiiAlGlV~aGt~n---~rv~~~Lr~l~~~~~~d~~ 738 (813)
||.+++|-|+.+... |-+.++...|..| .+||+
T Consensus 976 GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY-~yDP~ 1011 (1702)
T KOG0915|consen 976 GAAFGFGAIAKQAGEKLEPYLKKLIPRLYRY-QYDPD 1011 (1702)
T ss_pred chhhchHHHHHHHHHhhhhHHHHhhHHHhhh-ccCCc
Confidence 899999999987764 3344444444443 46765
No 73
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.79 E-value=53 Score=39.72 Aligned_cols=267 Identities=17% Similarity=0.174 Sum_probs=131.8
Q ss_pred hhcCCChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcCCCHHHHHHHHHHHHH---HhccCCC-----H----HHHH
Q 003521 436 YFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGI---SYAGTQN-----D----QIRH 503 (813)
Q Consensus 436 yL~s~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl---~y~Gs~~-----e----~i~e 503 (813)
|..+.+..++..|+-|+=..+-|..- ....+....+++.+..+-+|..|+-.+-+ .+.+.-. + +++.
T Consensus 206 ~~~~~D~~Vrt~A~eglL~L~eg~kL-~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~ 284 (823)
T KOG2259|consen 206 LEHDQDFRVRTHAVEGLLALSEGFKL-SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFS 284 (823)
T ss_pred HhcCCCcchHHHHHHHHHhhcccccc-cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHH
Confidence 34456677788887775444444432 23466777788888888899887554433 3322211 1 2333
Q ss_pred HHHHhccCCCCchhHHHHHHHHHhhHhcCCCCHHHHHHHHH-HHhcc---CccccCchhHHHHHHHHHHhhcCChhhHHH
Q 003521 504 KLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIF-ALMDR---SESELGEPLTRLIPLGLGLLYLGKQESVEA 579 (813)
Q Consensus 504 ~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~-~L~~~---~~~~l~e~~~r~~~lglgLl~lG~~e~~~~ 579 (813)
.+-..+.|-+....| .|+=+||-. ++-+++.+.+.+. -+|.+ ..+. |++-.+.. +-|=---|++-.+|.
T Consensus 285 ~vC~~v~D~sl~VRV--~AaK~lG~~--~~vSee~i~QTLdKKlms~lRRkr~a-hkrpk~l~--s~GewSsGk~~~adv 357 (823)
T KOG2259|consen 285 SVCRAVRDRSLSVRV--EAAKALGEF--EQVSEEIIQQTLDKKLMSRLRRKRTA-HKRPKALY--SSGEWSSGKEWNADV 357 (823)
T ss_pred HHHHHHhcCceeeee--hHHHHhchH--HHhHHHHHHHHHHHHHhhhhhhhhhc-ccchHHHH--hcCCcccCccccccC
Confidence 444445576555555 578888854 4444444443332 22221 0111 11111100 001001123322333
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhcccCCCCcchhhHHHHHHHHhhccchhhHHHHHHHHHHH
Q 003521 580 TAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHL 659 (813)
Q Consensus 580 ~i~~L~~~~~p~~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e~~~~~l~~L 659 (813)
--+...+....++-.|++-| +.|-..+.. -+||++||-+++.++.+.| ..+.+.++-|
T Consensus 358 psee~d~~~~siI~sGACGA----------------~VhGlEDEf---~EVR~AAV~Sl~~La~ssP---~FA~~aldfL 415 (823)
T KOG2259|consen 358 PSEEDDEEEESIIPSGACGA----------------LVHGLEDEF---YEVRRAAVASLCSLATSSP---GFAVRALDFL 415 (823)
T ss_pred chhhccccccccccccccce----------------eeeechHHH---HHHHHHHHHHHHHHHcCCC---CcHHHHHHHH
Confidence 23333333333443332211 112111100 0578888888888877777 5555555555
Q ss_pred hh---cCChhHHhHHHHHHhhhcc-CCCchhHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCc---hHHHHHHHHHhhh
Q 003521 660 LQ---YGEQNIRRAVPLALGLLCI-SNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNN---ARIAGMLRNLSSY 732 (813)
Q Consensus 660 ~~---~~~~~VR~g~~lALGL~~a-Gt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n---~rv~~~Lr~l~~~ 732 (813)
.. +....||--+..||-.+.. ++-+.+-+++...-..|...+||.+..--|+..-.-+-+ -=++.+|+.|.+|
T Consensus 416 vDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~ky 495 (823)
T KOG2259|consen 416 VDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNLGKY 495 (823)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhC
Confidence 43 3335677777777765432 334455555555556777777776554444433222221 2356677777666
No 74
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.80 E-value=1.2e+02 Score=33.55 Aligned_cols=184 Identities=13% Similarity=0.076 Sum_probs=98.7
Q ss_pred hcCCCCHHHHHHHHHHHhccCccccCchhHHHHHHHHHHhhcCChhhHHHHHHHhhhhhhhhhhhhhHHHHHHHHhcCCC
Q 003521 530 YVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGN 609 (813)
Q Consensus 530 ~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~lG~~e~~~~~i~~L~~~~~p~~r~~~~~~~glAyaGTGn 609 (813)
|.|-..++.+...+.-+..+ ..-..++-+..++--|....++.++.......+.. ....+.++-.|.-+|.
T Consensus 113 F~G~qPesqlr~~ld~~~~~-------~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~--~~~~~~la~~~l~~g~ 183 (304)
T COG3118 113 FQGAQPESQLRQFLDKVLPA-------EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN--SEAKLLLAECLLAAGD 183 (304)
T ss_pred cCCCCcHHHHHHHHHHhcCh-------HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc--chHHHHHHHHHHHcCC
Confidence 55666666666666654321 12234445556666666666666666544322111 2344556667788888
Q ss_pred HHHHHHHHhhhcccCCCCcchhhHHHHH-HHHhhccchhhHHHHHHHHHHHhhcC-ChhHHhHHHHHHhhhccCCCchhH
Q 003521 610 VLKVQNLLGHCAQHHEKGEAYQGPAVLG-IAMVAMAEELGLEMAIRSLEHLLQYG-EQNIRRAVPLALGLLCISNPKVNV 687 (813)
Q Consensus 610 ~~~iq~LL~~~~~~~~d~~~vrr~Avlg-lalI~~~~~~g~e~~~~~l~~L~~~~-~~~VR~g~~lALGL~~aGt~~~~a 687 (813)
++..+.+|.-.-.+..+ -++.++.+ |.|+.--... .....+...+..+. |+..|...+..+=+ .| -+..+
T Consensus 184 ~e~A~~iL~~lP~~~~~---~~~~~l~a~i~ll~qaa~~--~~~~~l~~~~aadPdd~~aa~~lA~~~~~--~g-~~e~A 255 (304)
T COG3118 184 VEAAQAILAALPLQAQD---KAAHGLQAQIELLEQAAAT--PEIQDLQRRLAADPDDVEAALALADQLHL--VG-RNEAA 255 (304)
T ss_pred hHHHHHHHHhCcccchh---hHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHhCCCCHHHHHHHHHHHHH--cC-CHHHH
Confidence 88888888765443332 12222222 3333211110 22345555666554 55555544333332 22 33455
Q ss_pred HHHHHHh----hcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHHhhh
Q 003521 688 MDTLSRL----SHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSY 732 (813)
Q Consensus 688 id~L~~l----~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~Lr~l~~~ 732 (813)
.+.|..+ ..+.|+.+|..=+=-+. ++|+.+|.+...+|+|++.
T Consensus 256 le~Ll~~l~~d~~~~d~~~Rk~lle~f~--~~g~~Dp~~~~~RRkL~sl 302 (304)
T COG3118 256 LEHLLALLRRDRGFEDGEARKTLLELFE--AFGPADPLVLAYRRKLYSL 302 (304)
T ss_pred HHHHHHHHHhcccccCcHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHh
Confidence 6655433 24457788876444444 4588889999999999874
No 75
>PRK12370 invasion protein regulator; Provisional
Probab=76.37 E-value=1.8e+02 Score=34.83 Aligned_cols=252 Identities=10% Similarity=-0.027 Sum_probs=118.1
Q ss_pred chhHHhHhhhhcCCChhhHHHHHHHHHHhh-----cCCC---CChhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC
Q 003521 427 DSGLAQIDKYFHSTDNHVIAGALLGVGIVN-----CGIR---NDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN 498 (813)
Q Consensus 427 ~~~l~~l~~yL~s~~~~~k~GAllaLGli~-----~g~~---~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~ 498 (813)
++|+..+.+.+.....+..+- .++|.++ .|.. ...+.+...+...+.-...... +...+|.++...++
T Consensus 278 ~~A~~~~~~Al~ldP~~a~a~--~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~--a~~~lg~~~~~~g~ 353 (553)
T PRK12370 278 QQALKLLTQCVNMSPNSIAPY--CALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ--ALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHhcCCccHHHH--HHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHccC
Confidence 456666766665444443332 2333222 1111 1124567777776653322222 22344555544444
Q ss_pred -HHHHHHHHHhcc-CCCCchhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCccccCchhHHHHHHHHHHhhcCChhh
Q 003521 499 -DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQES 576 (813)
Q Consensus 499 -e~i~e~L~~~L~-d~~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~lG~~e~ 576 (813)
++..+.+...+. +++ +.+ +-+.+|.++...|+.+.+...+....+..+. ..... ...+..+...|+-++
T Consensus 354 ~~~A~~~~~~Al~l~P~-~~~----a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~---~~~~~-~~~~~~~~~~g~~ee 424 (553)
T PRK12370 354 YIVGSLLFKQANLLSPI-SAD----IKYYYGWNLFMAGQLEEALQTINECLKLDPT---RAAAG-ITKLWITYYHTGIDD 424 (553)
T ss_pred HHHHHHHHHHHHHhCCC-CHH----HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---ChhhH-HHHHHHHHhccCHHH
Confidence 355555555554 332 222 4456677777777655444444443332222 11111 122334555677777
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhcccCCCCcchhhHHHHHHHHhhccchhhHHHHHHHH
Q 003521 577 VEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSL 656 (813)
Q Consensus 577 ~~~~i~~L~~~~~p~~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e~~~~~l 656 (813)
+...++.+....+|-. ......+|.+|...|+.......+.-...... ....+.-.++-+..+.. +.+...+
T Consensus 425 A~~~~~~~l~~~~p~~-~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g---~~a~~~l 496 (553)
T PRK12370 425 AIRLGDELRSQHLQDN-PILLSMQVMFLSLKGKHELARKLTKEISTQEI----TGLIAVNLLYAEYCQNS---ERALPTI 496 (553)
T ss_pred HHHHHHHHHHhccccC-HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc----hhHHHHHHHHHHHhccH---HHHHHHH
Confidence 7666665443222211 22345678889999996544443332222211 12233333433333332 4555555
Q ss_pred HHHhhcCChhHHhHHHHHHhhhccCCCchhHHHHHHHhhcCCchH
Q 003521 657 EHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSE 701 (813)
Q Consensus 657 ~~L~~~~~~~VR~g~~lALGL~~aGt~~~~aid~L~~l~~D~d~~ 701 (813)
..|..... -|..-+-.+.++++.-|+.+--..+.++-++.+..
T Consensus 497 ~~ll~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 539 (553)
T PRK12370 497 REFLESEQ--RIDNNPGLLPLVLVAHGEAIAEKMWNKFKNEDNIW 539 (553)
T ss_pred HHHHHHhh--HhhcCchHHHHHHHHHhhhHHHHHHHHhhccchHh
Confidence 55543221 12212222445555557777766666666655543
No 76
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=76.17 E-value=2.1e+02 Score=35.67 Aligned_cols=167 Identities=8% Similarity=0.014 Sum_probs=96.9
Q ss_pred HHHHHhhcCChhhHHHHHHHhhhhhhhhh---hhhhHHHHHHHHhcCCCHHHHHHHHhhhcccCCC------------C-
Q 003521 564 LGLGLLYLGKQESVEATAEVSKTFNEKIR---KYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEK------------G- 627 (813)
Q Consensus 564 lglgLl~lG~~e~~~~~i~~L~~~~~p~~---r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d------------~- 627 (813)
+|...+..|+.+++...++.+...+ |.. .......++.+|.-.|........+.-+.+...+ +
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~-p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~ 356 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHP-ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPND 356 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcC-CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCc
Confidence 4667777889899988888765432 221 1223344566788889876555554433322110 0
Q ss_pred cchhhHHHHHHHHhhccchhhHHHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCc-hhHHHHHHHh-hcCCchHHHHH
Q 003521 628 EAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK-VNVMDTLSRL-SHDTDSEVAMA 705 (813)
Q Consensus 628 ~~vrr~AvlglalI~~~~~~g~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~~-~~aid~L~~l-~~D~d~~Vr~~ 705 (813)
.........+..++..++. +.+...++.+......+. .+-+.+|.+....++ .++++.|.+. ..+|++. .
T Consensus 357 ~~~~a~~~~a~~l~~~g~~---~eA~~~l~~al~~~P~n~--~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~---~ 428 (765)
T PRK10049 357 DWLQGQSLLSQVAKYSNDL---PQAEMRARELAYNAPGNQ--GLRIDYASVLQARGWPRAAENELKKAEVLEPRNI---N 428 (765)
T ss_pred hHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh---H
Confidence 0122334556667777776 888888888766443232 344455555544443 4566677655 4567653 2
Q ss_pred HHHHHHHHcCCCCc-hHHHHHHHHHhhhhccChhh
Q 003521 706 AVISLGLIGSGTNN-ARIAGMLRNLSSYYYKDANL 739 (813)
Q Consensus 706 AiiAlGlV~aGt~n-~rv~~~Lr~l~~~~~~d~~~ 739 (813)
+.+++|++..+.++ .+...+++++.+..-.|+.+
T Consensus 429 l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 429 LEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 44677777777775 44555667666654455543
No 77
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=75.75 E-value=6.7 Score=49.06 Aligned_cols=88 Identities=28% Similarity=0.281 Sum_probs=67.3
Q ss_pred chhhHHHHHHHHhhccchhhHHHHHH-----H-HHHHhhcCChhHHhHHHHHHhhhccCCC-------chhHHHHHHHhh
Q 003521 629 AYQGPAVLGIAMVAMAEELGLEMAIR-----S-LEHLLQYGEQNIRRAVPLALGLLCISNP-------KVNVMDTLSRLS 695 (813)
Q Consensus 629 ~vrr~AvlglalI~~~~~~g~e~~~~-----~-l~~L~~~~~~~VR~g~~lALGL~~aGt~-------~~~aid~L~~l~ 695 (813)
+.|..|+.-+|-|.-+-+.|++.|.. + ++||-...+|-.|.=+|++||.+..-.. ...|.+.|..+.
T Consensus 572 EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~L 651 (1387)
T KOG1517|consen 572 EQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLL 651 (1387)
T ss_pred HHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHh
Confidence 56778888888888888888876543 2 3344333479999999999999864332 345778899999
Q ss_pred cCCchHHHHHHHHHHHHHcCC
Q 003521 696 HDTDSEVAMAAVISLGLIGSG 716 (813)
Q Consensus 696 ~D~d~~Vr~~AiiAlGlV~aG 716 (813)
+|+.+.||-+|++|||-..-+
T Consensus 652 sD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 652 SDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred cCccHHHHHHHHHHHHHHhcc
Confidence 999999999999999966543
No 78
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=75.57 E-value=3.1 Score=28.86 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=21.0
Q ss_pred HHhHHHHHHhhhccCCCchhHHHHHHHhhcC
Q 003521 667 IRRAVPLALGLLCISNPKVNVMDTLSRLSHD 697 (813)
Q Consensus 667 VR~g~~lALGL~~aGt~~~~aid~L~~l~~D 697 (813)
||+.++.+||-+ +++++++.|.....|
T Consensus 1 VR~~Aa~aLg~i----gd~~ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALGQI----GDPRAIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHGGG-----SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc----CCHHHHHHHHHHhcC
Confidence 688999999988 678888888776543
No 79
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=74.31 E-value=50 Score=35.59 Aligned_cols=70 Identities=17% Similarity=0.155 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchhHH------HHHHHhhcCCchHHHHHHHHHHHHHcCCCCc
Q 003521 650 EMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVM------DTLSRLSHDTDSEVAMAAVISLGLIGSGTNN 719 (813)
Q Consensus 650 e~~~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~~~~ai------d~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n 719 (813)
+...+++..|-...||.|+..+..++|...+-+.+.++| ..+..+.++|++.||..|+-|+.=.-....|
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 555566666666778888888888888876666666665 3456778888888998888888755444434
No 80
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.16 E-value=1.1e+02 Score=38.10 Aligned_cols=166 Identities=19% Similarity=0.168 Sum_probs=92.6
Q ss_pred hhhcCCChhhHHHHHHHHHHhhcCCCC----ChhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHh-c
Q 003521 435 KYFHSTDNHVIAGALLGVGIVNCGIRN----DCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTI-L 509 (813)
Q Consensus 435 ~yL~s~~~~~k~GAllaLGli~~g~~~----e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~e~i~e~L~~~-L 509 (813)
.+++++...+|++++.-+.-.--.... ....+++...++|.+.++++-..|+-|+-... --.++++++.|... .
T Consensus 734 ~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lc-evy~e~il~dL~e~Y~ 812 (982)
T KOG4653|consen 734 SSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLC-EVYPEDILPDLSEEYL 812 (982)
T ss_pred HHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHH-HhcchhhHHHHHHHHH
Confidence 345667889999999877644332110 12357788889999998887777777665432 22577888888763 3
Q ss_pred cCCCC--------chhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCccccCchhHHHHHHH-HHHhhc-----CCh-
Q 003521 510 NDAKS--------PLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLG-LGLLYL-----GKQ- 574 (813)
Q Consensus 510 ~d~~~--------~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~lg-lgLl~l-----G~~- 574 (813)
+..+. -+|+..--+.++|=++.+-- +.++++.+..... .+..-|.-++| +|.++- +..
T Consensus 813 s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-----~~Li~tfl~gvre--pd~~~RaSS~a~lg~Lcq~~a~~vsd~ 885 (982)
T KOG4653|consen 813 SEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-----AVLINTFLSGVRE--PDHEFRASSLANLGQLCQLLAFQVSDF 885 (982)
T ss_pred hcccCCCccceehHHHHHHHHHHHhccHHHHHH-----HHHHHHHHHhcCC--chHHHHHhHHHHHHHHHHHHhhhhhHH
Confidence 21111 13444444556665544432 3556665543221 12233444442 233321 111
Q ss_pred --hhHHHHHHHhhhhhhhhhhhhhHHHHHHHHhcCC
Q 003521 575 --ESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTG 608 (813)
Q Consensus 575 --e~~~~~i~~L~~~~~p~~r~~~~~~~glAyaGTG 608 (813)
|.+..++.....+..+..|.+++.++.-..-|||
T Consensus 886 ~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg 921 (982)
T KOG4653|consen 886 FHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTG 921 (982)
T ss_pred HHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccc
Confidence 1223344444555667777777777777777777
No 81
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.07 E-value=1.7e+02 Score=36.16 Aligned_cols=260 Identities=15% Similarity=0.130 Sum_probs=132.6
Q ss_pred cCCChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC----HHHHHHHHHhccCCC
Q 003521 438 HSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN----DQIRHKLSTILNDAK 513 (813)
Q Consensus 438 ~s~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~----e~i~e~L~~~L~d~~ 513 (813)
+++++-+++-|+=.+|.+.-+..-+ -+..=|...+++.++++|..|.++....|--..+ ..+.+.|+..+.|+
T Consensus 96 ~d~np~iR~lAlrtm~~l~v~~i~e--y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~- 172 (734)
T KOG1061|consen 96 EDPNPLIRALALRTMGCLRVDKITE--YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDS- 172 (734)
T ss_pred CCCCHHHHHHHhhceeeEeehHHHH--HHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCC-
Confidence 4567788887777777665433211 1333345567788999999998888776643322 35678888888866
Q ss_pred CchhHHHHHHHHHhhHhcCCCC---HHHHHHHHHHHhccCccccCchhHHHHHHHHHHhhcCChh-hHHHHHHHhhhhhh
Q 003521 514 SPLDVIAFSAISLGLIYVGSCN---EEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE-SVEATAEVSKTFNE 589 (813)
Q Consensus 514 ~~~e~~~~AaLaLGLi~lGs~~---~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~lG~~e-~~~~~i~~L~~~~~ 589 (813)
+..|++-|-=||-.|.--+.+ ......++..++++-. + -+.|.+...+-.-.-|.-+.+ .++.+++.+.
T Consensus 173 -~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~-e-c~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~---- 245 (734)
T KOG1061|consen 173 -NPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALN-E-CTEWGQIFILDCLAEYVPKDSREAEDICERLT---- 245 (734)
T ss_pred -CchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHH-H-hhhhhHHHHHHHHHhcCCCCchhHHHHHHHhh----
Confidence 334443444455555433332 1222333333333311 1 234887776654444443333 5666666553
Q ss_pred hhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhcc---cC----C--------CCcchhhHHHHHHHHhhccchhhHHHHHH
Q 003521 590 KIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQ---HH----E--------KGEAYQGPAVLGIAMVAMAEELGLEMAIR 654 (813)
Q Consensus 590 p~~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~---~~----~--------d~~~vrr~AvlglalI~~~~~~g~e~~~~ 654 (813)
|...++... .=-+.++.+-+++.+... .. . ..+.++-.+.=-+.+|....|. -...+
T Consensus 246 p~Lqh~n~a------vvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~--~~~~~ 317 (734)
T KOG1061|consen 246 PRLQHANSA------VVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPE--ILKVE 317 (734)
T ss_pred hhhccCCcc------eEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChH--HHHhH
Confidence 222221100 011223333333333221 00 0 0024455566677788777771 11222
Q ss_pred HHHHHhhcCChh-HHhH-HHHHHhhhccCCCchhHHHHHHHhhcCCchHHHHHHHHHHHHHcCC
Q 003521 655 SLEHLLQYGEQN-IRRA-VPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSG 716 (813)
Q Consensus 655 ~l~~L~~~~~~~-VR~g-~~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aG 716 (813)
+-.-+.+|.||. |+-- .=.-.++++ ++.-.++..-|..+..+.|.+..+-||-|+|=+...
T Consensus 318 ~~~Ff~kynDPiYvK~eKleil~~la~-~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik 380 (734)
T KOG1061|consen 318 IKVFFCKYNDPIYVKLEKLEILIELAN-DANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIK 380 (734)
T ss_pred hHeeeeecCCchhhHHHHHHHHHHHhh-HhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhh
Confidence 222334555553 2111 111112222 233445666777888888877777788888877654
No 82
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=72.43 E-value=1e+02 Score=30.31 Aligned_cols=18 Identities=11% Similarity=0.039 Sum_probs=8.7
Q ss_pred HHHHHHhcCCCHHHHHHH
Q 003521 599 LLSCAYAGTGNVLKVQNL 616 (813)
Q Consensus 599 ~~glAyaGTGn~~~iq~L 616 (813)
.+|.+|...|+.......
T Consensus 140 ~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 140 NAGLCALKAGDFDKAEKY 157 (234)
T ss_pred HHHHHHHHcCCHHHHHHH
Confidence 345555555554444333
No 83
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=72.15 E-value=2.1e+02 Score=33.86 Aligned_cols=82 Identities=13% Similarity=0.148 Sum_probs=51.2
Q ss_pred HHhhcCChhHHhHHHHHHhhhccCCCchhHH---------HHHHHh---hcCCchHHHHHHHHHHHHHcCCCC---chHH
Q 003521 658 HLLQYGEQNIRRAVPLALGLLCISNPKVNVM---------DTLSRL---SHDTDSEVAMAAVISLGLIGSGTN---NARI 722 (813)
Q Consensus 658 ~L~~~~~~~VR~g~~lALGL~~aGt~~~~ai---------d~L~~l---~~D~d~~Vr~~AiiAlGlV~aGt~---n~rv 722 (813)
.+.++.|+.+|-.+.=++|.++..+--..++ ..|..+ .+....++|..++=|++.+..... +.++
T Consensus 297 ~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i 376 (503)
T PF10508_consen 297 SMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDI 376 (503)
T ss_pred HHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHH
Confidence 4557789999988888999987443333333 112222 234556789999999999854333 3456
Q ss_pred HHHHHHHhhhhccChhh
Q 003521 723 AGMLRNLSSYYYKDANL 739 (813)
Q Consensus 723 ~~~Lr~l~~~~~~d~~~ 739 (813)
..+.+......+.+|..
T Consensus 377 ~~~~~~w~~~~~~~~~~ 393 (503)
T PF10508_consen 377 LSITESWYESLSGSPLS 393 (503)
T ss_pred HHHHHHHHHHhcCCchH
Confidence 66666655555556554
No 84
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=72.15 E-value=2.6e+02 Score=34.76 Aligned_cols=213 Identities=20% Similarity=0.258 Sum_probs=112.8
Q ss_pred ccCCCHHHHHhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHhcC--CCcchH
Q 003521 34 DEDLSEEDLALKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETM--PDSDLK 111 (813)
Q Consensus 34 ~~~lseed~~lk~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye~~--~~~~~k 111 (813)
+++|+.|.++ .-++-.++-.+++..+-.++.||.+|.+.-+++-. .|-++++--+.=+- .+. .|
T Consensus 352 e~~L~~~e~k-Er~i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga------------~~lfnqiLpllMs~tLeDq-er 417 (1172)
T KOG0213|consen 352 EPLLEDEEGK-ERKIMRLLLKVKNGTPPMRKSALRILTDKARNFGA------------GPLFNQILPLLMSPTLEDQ-ER 417 (1172)
T ss_pred hhhcCccccc-HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhcc------------HHHHHHHHHHHcCccccch-hh
Confidence 3455555432 22445566677888999999999999998888832 12233333332221 222 24
Q ss_pred HHHHH-HHHHHHhhccccc-----------------cccchhhhhcC-------------------CCCCCCCcccHHHH
Q 003521 112 KYMAD-ILSVLALTMSAEG-----------------ERESLKYRLLG-------------------SEGDIGSWGHEYVR 154 (813)
Q Consensus 112 ~~~Ad-ilS~l~~t~~~~~-----------------~~~~L~y~L~~-------------------~~~d~~~wgheYvr 154 (813)
.++-- |.++|| .+++ ++|.++=|..| -.-|+.+- .||||
T Consensus 418 hllVkvidriLy---klDdlvrpYVhkILvViepllided~yar~egreIisnLakaaGla~mistmrpDidn~-deYVR 493 (1172)
T KOG0213|consen 418 HLLVKVIDRILY---KLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNK-DEYVR 493 (1172)
T ss_pred hhHHHHHHHHHH---hhcccchhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccc-cHHHH
Confidence 44433 355553 3321 22222222222 13578776 89999
Q ss_pred HHHHHHHHHHHHhccCccCHHHHHHHHHHHHH----HHhcCCC--HHHHHHHHHhcCChhhhHH-------Hh-hccChH
Q 003521 155 NLAGEIAQEYAKRQTDEASIDDLMELVQEIVA----FHMKHNA--EPEAVDLLMEVEDLDLLVE-------HV-DATNFK 220 (813)
Q Consensus 155 ~l~~~i~~~y~~~~~~~~~~~~L~~lv~~iv~----~~l~~n~--e~eAvdlalE~~~ld~i~~-------~v-d~~~~~ 220 (813)
+..+........... ++.|..+++.... .--.|-. -.|-|.+++-+.++--+.. .+ |+..+.
T Consensus 494 nttarafavvasalg----ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkV 569 (1172)
T KOG0213|consen 494 NTTARAFAVVASALG----IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKV 569 (1172)
T ss_pred HHHHHHHHHHHHHhC----cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhh
Confidence 999888777764432 4455555444321 1111221 2344666666665544333 22 445566
Q ss_pred HHH-----HHHHhhc-ccCCCCCcH-HHHHHHHHHHHccC-C----HHHHHHHHHhCCChHH
Q 003521 221 RTC-----LYLTSAA-KYLPGPDDM-LVLDIAYMIYLKFE-E----FPNALQIALFLDNMQY 270 (813)
Q Consensus 221 rv~-----~Yl~~~~-~~~~~p~~~-~vl~~~~~iy~~~~-~----~~~al~~al~l~d~~~ 270 (813)
|+. .|+...+ +|-+ +.| +||+.+.+--.++. + |-.|++-.+-+-|++.
T Consensus 570 R~itAlalsalaeaa~Pygi--e~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~ey 629 (1172)
T KOG0213|consen 570 RTITALALSALAEAATPYGI--EQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEY 629 (1172)
T ss_pred hhHHHHHHHHHHHhcCCcch--HHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHH
Confidence 655 4444443 2221 223 57777766655543 2 5666677777777764
No 85
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=71.63 E-value=5.9 Score=28.14 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=20.1
Q ss_pred HHHHHHhhcCChhHHhHHHHHHhhh
Q 003521 654 RSLEHLLQYGEQNIRRAVPLALGLL 678 (813)
Q Consensus 654 ~~l~~L~~~~~~~VR~g~~lALGL~ 678 (813)
..+-+++++.++.||.+++.++|-+
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i 27 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAI 27 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4556778889999999999999965
No 86
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=71.61 E-value=96 Score=37.96 Aligned_cols=170 Identities=19% Similarity=0.131 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhccCccccCchhHHHHHHHH-HHhhcCC----hhhHHHHHHHhh-h--hhhhhhhhhhHHHHHHHHhcCC
Q 003521 537 EVAQAIIFALMDRSESELGEPLTRLIPLGL-GLLYLGK----QESVEATAEVSK-T--FNEKIRKYCDMTLLSCAYAGTG 608 (813)
Q Consensus 537 e~~e~ll~~L~~~~~~~l~e~~~r~~~lgl-gLl~lG~----~e~~~~~i~~L~-~--~~~p~~r~~~~~~~glAyaGTG 608 (813)
+.+..++..+...+++ +++-+||=++.+ ++++=.. ++..+.+.+.+. + +..|.+|..++++++=----++
T Consensus 81 DlV~~~f~hlLRg~Es--kdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~ 158 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTES--KDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPK 158 (892)
T ss_pred hHHHHHHHHHHhcccC--cchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCC
Confidence 4566666666644444 577778866644 5554311 123444555443 2 4568999988877643222344
Q ss_pred C--HHHHHHHHhhhcccCCCCcchhhHHHHHHHHhhccchhhHHHH-----------------------------HHHHH
Q 003521 609 N--VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMA-----------------------------IRSLE 657 (813)
Q Consensus 609 n--~~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e~~-----------------------------~~~l~ 657 (813)
| ..+++.+......|.++ .|||+|.+.|+-=..--|--.|.+ .++++
T Consensus 159 dee~~v~n~l~~liqnDpS~--EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi~krv~Lle 236 (892)
T KOG2025|consen 159 DEECPVVNLLKDLIQNDPSD--EVRRAALSNISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSIDKRVLLLE 236 (892)
T ss_pred CCcccHHHHHHHHHhcCCcH--HHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Confidence 3 45777777777778777 899998887653211111000110 01111
Q ss_pred HHhhcCChhHHhHHHHHHhhhccCCCchhHHHHHHHhhcCCchHHHHHHHHHH
Q 003521 658 HLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISL 710 (813)
Q Consensus 658 ~L~~~~~~~VR~g~~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~~AiiAl 710 (813)
.=+.+-+-.||.+..=++.--..-....++++.|+++=-...+.|+.-|+-|+
T Consensus 237 wgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvsnss~vavk~leal 289 (892)
T KOG2025|consen 237 WGLNDREFSVKGALVDAILSGWLRFSDGNILELLERLDVSNSSEVAVKALEAL 289 (892)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHhhhccccHHHHHHHhccccchHHHHHHHHHH
Confidence 11233355666665555444333344556788888875444556665544443
No 87
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=71.45 E-value=35 Score=32.52 Aligned_cols=48 Identities=15% Similarity=0.116 Sum_probs=39.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhC-CChHHHHHHHHhcchHHHHHHHH
Q 003521 241 VLDIAYMIYLKFEEFPNALQIALFL-DNMQYVKQIFTSCDDLLRKKQFC 288 (813)
Q Consensus 241 vl~~~~~iy~~~~~~~~al~~al~l-~d~~~i~~i~~~~~d~~~~~Qla 288 (813)
+.+.++-+|.+.++|.+|+.++++- +|++...+.+.+..++..-.+++
T Consensus 84 l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~~~~~lw~~~~ 132 (140)
T smart00299 84 LYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAEVL 132 (140)
T ss_pred cHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhCCCHHHHHHHH
Confidence 4567788899999999999999987 89999999999987776555554
No 88
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=70.14 E-value=2e+02 Score=34.85 Aligned_cols=183 Identities=14% Similarity=0.132 Sum_probs=110.1
Q ss_pred hhhcCCChhhHHHHHHHHHHhhcCCCCChhhHHHH------HHHhhcCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHh
Q 003521 435 KYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALAL------LSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTI 508 (813)
Q Consensus 435 ~yL~s~~~~~k~GAllaLGli~~g~~~e~d~~~~l------L~~~L~~~~~~v~~gA~lGLGl~y~Gs~~e~i~e~L~~~ 508 (813)
+-|.+.+.-+.+..+--+|.|..+.. +--++.+. |.+.|.+.+..+|..|.-.+|.+.-.-+..|++..|+..
T Consensus 695 PILrnkh~Kv~~nti~lvg~I~~~~p-eyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~Llnn 773 (975)
T COG5181 695 PILRNKHQKVVANTIALVGTICMNSP-EYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNN 773 (975)
T ss_pred HhhhhhhHHHhhhHHHHHHHHHhcCc-ccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhc
Confidence 33445666677777777888876542 22223332 334566667788999999999998777788999999988
Q ss_pred ccCCCCchhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCccccCchhHHHHHHHHHHhhc--CChh-----hHHHHH
Q 003521 509 LNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYL--GKQE-----SVEATA 581 (813)
Q Consensus 509 L~d~~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~l--G~~e-----~~~~~i 581 (813)
|.-.+-...+ ..++|+|.|.-=.+.-. .+.+||...+|. ...+..+.-=++++.|- |+.. ..-+++
T Consensus 774 LkvqeRq~Rv--ctsvaI~iVae~cgpfs----VlP~lm~dY~TP-e~nVQnGvLkam~fmFeyig~~s~dYvy~itPll 846 (975)
T COG5181 774 LKVQERQQRV--CTSVAISIVAEYCGPFS----VLPTLMSDYETP-EANVQNGVLKAMCFMFEYIGQASLDYVYSITPLL 846 (975)
T ss_pred chHHHHHhhh--hhhhhhhhhHhhcCchh----hHHHHHhcccCc-hhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 8522112344 35566665522122222 344555444443 22233333335554443 4332 234566
Q ss_pred HHhhhhhhhhhhhhhHHH---HHHHHhcCCCHHHHHHHHhhhcccCC
Q 003521 582 EVSKTFNEKIRKYCDMTL---LSCAYAGTGNVLKVQNLLGHCAQHHE 625 (813)
Q Consensus 582 ~~L~~~~~p~~r~~~~~~---~glAyaGTGn~~~iq~LL~~~~~~~~ 625 (813)
+.-..+.||.-|..++-+ +++..-|||+.++.-+||...-...-
T Consensus 847 eDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIl 893 (975)
T COG5181 847 EDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNIL 893 (975)
T ss_pred HhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhcc
Confidence 666677888887766522 34557899999999999887765543
No 89
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=67.84 E-value=7.5 Score=27.19 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=23.3
Q ss_pred hHHhHHHHHHhhhccCCCchhHHHHHHHhhcCC
Q 003521 666 NIRRAVPLALGLLCISNPKVNVMDTLSRLSHDT 698 (813)
Q Consensus 666 ~VR~g~~lALGL~~aGt~~~~aid~L~~l~~D~ 698 (813)
.||+.++.+||-+ +++++++.|..+..|+
T Consensus 2 ~vR~~aa~aLg~~----~~~~a~~~L~~~l~d~ 30 (30)
T smart00567 2 LVRHEAAFALGQL----GDEEAVPALIKALEDE 30 (30)
T ss_pred HHHHHHHHHHHHc----CCHhHHHHHHHHhcCC
Confidence 5888999999976 6788888888877764
No 90
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=65.05 E-value=79 Score=31.84 Aligned_cols=90 Identities=18% Similarity=0.198 Sum_probs=62.2
Q ss_pred ChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhcc-C--CCHHHHHHHHHhccCCCCchh
Q 003521 441 DNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAG-T--QNDQIRHKLSTILNDAKSPLD 517 (813)
Q Consensus 441 ~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~G-s--~~e~i~e~L~~~L~d~~~~~e 517 (813)
++.+|..++.++|=...-+.+-.||....+...|.++++.+|..|++.|--.... . .+..++-.+...+.|+ +.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~--~~~ 78 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDE--NPE 78 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCC--CHH
Confidence 3568889999999554444455678888999999999999999999888764432 1 1234534444566666 556
Q ss_pred HHHHHHHHHhhHhcC
Q 003521 518 VIAFSAISLGLIYVG 532 (813)
Q Consensus 518 ~~~~AaLaLGLi~lG 532 (813)
++..|...+.-+..-
T Consensus 79 Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 79 IRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHHHHHHHh
Confidence 666777777766544
No 91
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.98 E-value=3.8e+02 Score=33.59 Aligned_cols=88 Identities=14% Similarity=0.025 Sum_probs=65.4
Q ss_pred chhhHHHHHHHhhhhcccccch-hHHhHhhhhcCCChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcCCCHHHHHHH
Q 003521 407 KEHGKMSAAASLGMILLWDVDS-GLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGA 485 (813)
Q Consensus 407 ~~~~k~sA~aslGlI~~~~~~~-~l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~~~~v~~gA 485 (813)
..-.|.+|...+.-|...-+.+ .+.-|++-....++|+|..|..|+--.|.--.++.+...+.+...|.+.++.|...|
T Consensus 121 N~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~splVvgsA 200 (968)
T KOG1060|consen 121 NQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPLVVGSA 200 (968)
T ss_pred cHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCcchhHH
Confidence 3456888888888777655544 244466767778999999999999998886555555566667777788888888888
Q ss_pred HHHHHHHhc
Q 003521 486 IMGLGISYA 494 (813)
Q Consensus 486 ~lGLGl~y~ 494 (813)
+++.--++.
T Consensus 201 v~AF~evCP 209 (968)
T KOG1060|consen 201 VMAFEEVCP 209 (968)
T ss_pred HHHHHHhch
Confidence 888776644
No 92
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.83 E-value=36 Score=41.63 Aligned_cols=102 Identities=18% Similarity=0.271 Sum_probs=73.5
Q ss_pred HHHHHHhhhcccCCCCcchhhHHHHHHHHhhccchhhHHHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCch----hH
Q 003521 612 KVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV----NV 687 (813)
Q Consensus 612 ~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~~~----~a 687 (813)
+|..+++-|.+. ++.+|..|+=.++.+-...-+ +.+.+=+....++.+|.+|+.++++.+-++-=++.. ..
T Consensus 87 avnt~~kD~~d~---np~iR~lAlrtm~~l~v~~i~--ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl 161 (734)
T KOG1061|consen 87 AVNTFLKDCEDP---NPLIRALALRTMGCLRVDKIT--EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGL 161 (734)
T ss_pred hhhhhhccCCCC---CHHHHHHHhhceeeEeehHHH--HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccch
Confidence 455556555332 235676666677776555433 555555666677889999999999888776544433 45
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHcCCCC
Q 003521 688 MDTLSRLSHDTDSEVAMAAVISLGLIGSGTN 718 (813)
Q Consensus 688 id~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~ 718 (813)
++.|..+..|+++.|-.||+-|+.-|...++
T Consensus 162 ~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 162 VDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred hHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 6888999999999999999999999998875
No 93
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=61.83 E-value=1.3e+02 Score=30.16 Aligned_cols=76 Identities=22% Similarity=0.202 Sum_probs=53.3
Q ss_pred HHHHHHhhcCChhHHhHHHHHHhhhccC-CCchhHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHHh
Q 003521 654 RSLEHLLQYGEQNIRRAVPLALGLLCIS-NPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLS 730 (813)
Q Consensus 654 ~~l~~L~~~~~~~VR~g~~lALGL~~aG-t~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~Lr~l~ 730 (813)
+.+...+.+.|+.+|+.+...+.-.... +--..+++.+..+.+|.+.+|+.+.--+|.-++.- +..++..++....
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~-~~~~v~~~l~~~~ 184 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK-DPERVIAFLEKNG 184 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH
Confidence 6778888889999999888777654443 45556777888888999999998755555555444 2345666666543
No 94
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=61.76 E-value=57 Score=38.09 Aligned_cols=39 Identities=18% Similarity=0.122 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhCCChHHHHHHHHhc
Q 003521 240 LVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSC 278 (813)
Q Consensus 240 ~vl~~~~~iy~~~~~~~~al~~al~l~d~~~i~~i~~~~ 278 (813)
+-|+-+.++....+++--++.|++.+||.+.-.++|.++
T Consensus 390 ~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 390 EKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344555566666666666666666666666666666654
No 95
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=61.32 E-value=25 Score=32.24 Aligned_cols=79 Identities=18% Similarity=0.166 Sum_probs=47.9
Q ss_pred HHhHHHHHHhhhccCCCch------hHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCc---hHHHHHHHHHhhhh-ccC
Q 003521 667 IRRAVPLALGLLCISNPKV------NVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNN---ARIAGMLRNLSSYY-YKD 736 (813)
Q Consensus 667 VR~g~~lALGL~~aGt~~~------~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n---~rv~~~Lr~l~~~~-~~d 736 (813)
-|+|+-++|+-+..|-++. ++++-+.....|+|.-||..|+-|+.-|.--..+ +...++...|.+.. --|
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4888888888776666554 2333333446899999999999999888544332 12222333333322 135
Q ss_pred hhhHHHHHH
Q 003521 737 ANLLFCVRI 745 (813)
Q Consensus 737 ~~~~f~~~l 745 (813)
++++.|+.+
T Consensus 82 ~~Vr~~a~~ 90 (97)
T PF12755_consen 82 ENVRSAAEL 90 (97)
T ss_pred hhHHHHHHH
Confidence 567777654
No 96
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=60.44 E-value=4.9e+02 Score=33.76 Aligned_cols=223 Identities=11% Similarity=-0.054 Sum_probs=122.0
Q ss_pred HHHHHHHHHHhhcCCCCChhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCC-HHHHHHHHHhccCCCCchhHHHHH
Q 003521 445 IAGALLGVGIVNCGIRNDCDPALALLSEYVGR-EDACIRIGAIMGLGISYAGTQN-DQIRHKLSTILNDAKSPLDVIAFS 522 (813)
Q Consensus 445 k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~-~~~~v~~gA~lGLGl~y~Gs~~-e~i~e~L~~~L~d~~~~~e~~~~A 522 (813)
...+...+|.+.... ..+.++..+...+.. ++. ..-+++|.++.-.++ ++..+.+...+..+. ... +
T Consensus 476 ~~~a~~~LG~~l~~~--~~~eAi~a~~~Al~~~Pd~----~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p-~~~----a 544 (987)
T PRK09782 476 DAAAWNRLAKCYRDT--LPGVALYAWLQAEQRQPDA----WQHRAVAYQAYQVEDYATALAAWQKISLHDM-SNE----D 544 (987)
T ss_pred CHHHHHHHHHHHHhC--CcHHHHHHHHHHHHhCCch----HHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-CcH----H
Confidence 445677777766542 222366655555533 222 236666776544444 344455544443221 112 3
Q ss_pred HHHHhhHhcCCCCHHHHHHHHHHHhccCccccCchhHHHHHHHHHHhhcCChhhHHHHHHHhhhhhhhhhhhhhHHHHHH
Q 003521 523 AISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSC 602 (813)
Q Consensus 523 aLaLGLi~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~lG~~e~~~~~i~~L~~~~~p~~r~~~~~~~gl 602 (813)
.+.+|.+.+..++.+.+...+.......+ +.......++..+...|+-+++...++...... |- ......+|.
T Consensus 545 ~~~la~all~~Gd~~eA~~~l~qAL~l~P----~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~-P~--~~a~~~LA~ 617 (987)
T PRK09782 545 LLAAANTAQAAGNGAARDRWLQQAEQRGL----GDNALYWWLHAQRYIPGQPELALNDLTRSLNIA-PS--ANAYVARAT 617 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCC----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CC--HHHHHHHHH
Confidence 45667777777877766666655443221 112223334445555688888877777655432 21 234467778
Q ss_pred HHhcCCCHHHHHHHHhhhcccCCCCcchhhHHHHHHHHhhccchhhHHHHHHHHHHHhhc--CChhHHhHHHHHHhhhcc
Q 003521 603 AYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQY--GEQNIRRAVPLALGLLCI 680 (813)
Q Consensus 603 AyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e~~~~~l~~L~~~--~~~~VR~g~~lALGL~~a 680 (813)
++...|+.......+.-+.....+ +.....-+|..+...|+. +.+...+...... .++.+.+..+.++ .
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l~Pd--~~~a~~nLG~aL~~~G~~---eeAi~~l~~AL~l~P~~~~a~~nLA~al----~ 688 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALELEPN--NSNYQAALGYALWDSGDI---AQSREMLERAHKGLPDDPALIRQLAYVN----Q 688 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHH----H
Confidence 888999876554444444433333 455666777778877877 7777777766543 3555555443333 3
Q ss_pred CCCch-hHHHHHHHh
Q 003521 681 SNPKV-NVMDTLSRL 694 (813)
Q Consensus 681 Gt~~~-~aid~L~~l 694 (813)
..|+. ++++.+++.
T Consensus 689 ~lGd~~eA~~~l~~A 703 (987)
T PRK09782 689 RLDDMAATQHYARLV 703 (987)
T ss_pred HCCCHHHHHHHHHHH
Confidence 33443 355555544
No 97
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=59.99 E-value=61 Score=39.54 Aligned_cols=48 Identities=31% Similarity=0.338 Sum_probs=37.6
Q ss_pred hcCChhHHhHHHHHHhhhc--cCCCchhHHHHHHHh-hcCCchHHHHHHHH
Q 003521 661 QYGEQNIRRAVPLALGLLC--ISNPKVNVMDTLSRL-SHDTDSEVAMAAVI 708 (813)
Q Consensus 661 ~~~~~~VR~g~~lALGL~~--aGt~~~~aid~L~~l-~~D~d~~Vr~~Aii 708 (813)
-+.+|.||.-+-+||.-.- .++++.+|..+|..+ -+||++.||+.|+.
T Consensus 136 ~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~liqnDpS~EVRRaaLs 186 (892)
T KOG2025|consen 136 KDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDLIQNDPSDEVRRAALS 186 (892)
T ss_pred hccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcHHHHHHHHH
Confidence 3568999999999987653 566777888887765 48999999986543
No 98
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.09 E-value=1.1e+02 Score=36.51 Aligned_cols=164 Identities=15% Similarity=0.155 Sum_probs=0.0
Q ss_pred HhcCCCHHHHHHHHh-----hhcccCCCCcchhhHHHHHHHH--hhccchh---hHHHHHHHHHHHhhcCChhHHhHHHH
Q 003521 604 YAGTGNVLKVQNLLG-----HCAQHHEKGEAYQGPAVLGIAM--VAMAEEL---GLEMAIRSLEHLLQYGEQNIRRAVPL 673 (813)
Q Consensus 604 yaGTGn~~~iq~LL~-----~~~~~~~d~~~vrr~Avlglal--I~~~~~~---g~e~~~~~l~~L~~~~~~~VR~g~~l 673 (813)
|.-.|+...|+++++ |+.+-.. ..|++..+|+|- |+.|.+. -..+++.++.-+.. .|..|||-+|-
T Consensus 31 l~~~~~~~~i~k~I~~L~~d~a~s~~~---n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D-~d~~vRyyACE 106 (675)
T KOG0212|consen 31 LVNNNDYDQIRKVISELAGDYAYSPHA---NMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSD-QDSQVRYYACE 106 (675)
T ss_pred HHccCcHHHHHHHHHHHHHHhccCccc---ccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccC-ccceeeeHhHH
Q ss_pred HHhhhc------cCCCchhHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCc-------hHHHHHHHHHhhhhccChhhH
Q 003521 674 ALGLLC------ISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNN-------ARIAGMLRNLSSYYYKDANLL 740 (813)
Q Consensus 674 ALGL~~------aGt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n-------~rv~~~Lr~l~~~~~~d~~~~ 740 (813)
+|=-+. .-..-++++|.|.+++.|+|..||-+|=+-=.++-.=-.. +.+..+|+. ..|-.+|++|
T Consensus 107 sLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~e--riy~~n~~tR 184 (675)
T KOG0212|consen 107 SLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRE--RIYVINPMTR 184 (675)
T ss_pred HHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHH--HHhcCCchHH
Q ss_pred HHHHHHHhhhhcCCCcccccccCCCCCCCChHHHHHHHHHH
Q 003521 741 FCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTL 781 (813)
Q Consensus 741 f~~~lAqGll~~G~g~~tlsp~~sd~~~~~~~a~~gL~~~l 781 (813)
..+.==+-.++.-.+.--++-. +.=+-||+.+|
T Consensus 185 ~flv~Wl~~Lds~P~~~m~~yl--------~~~ldGLf~~L 217 (675)
T KOG0212|consen 185 QFLVSWLYVLDSVPDLEMISYL--------PSLLDGLFNML 217 (675)
T ss_pred HHHHHHHHHHhcCCcHHHHhcc--------hHHHHHHHHHh
No 99
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=57.80 E-value=5.3e+02 Score=33.35 Aligned_cols=73 Identities=19% Similarity=0.253 Sum_probs=41.0
Q ss_pred hcCCChhhHHHHHHHHHHhhcCCCCC-hhhHHHHHHHhhc-CCCHHHHHHHHHHHHHH-hccCCCHHHHHHHHHhc
Q 003521 437 FHSTDNHVIAGALLGVGIVNCGIRND-CDPALALLSEYVG-REDACIRIGAIMGLGIS-YAGTQNDQIRHKLSTIL 509 (813)
Q Consensus 437 L~s~~~~~k~GAllaLGli~~g~~~e-~d~~~~lL~~~L~-~~~~~v~~gA~lGLGl~-y~Gs~~e~i~e~L~~~L 509 (813)
+.+.+..++-.|.=|+|-++.--..+ .|.++.-..+.+. -++...-||||++|+-. ..|---.+..+.+.|++
T Consensus 350 l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvplI 425 (1133)
T KOG1943|consen 350 LSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDVVPLI 425 (1133)
T ss_pred ccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 44678899999999999987643211 1122222222221 12356667999999864 34443444444444443
No 100
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=57.40 E-value=4.3e+02 Score=32.20 Aligned_cols=269 Identities=19% Similarity=0.213 Sum_probs=132.3
Q ss_pred HHHhhhhcccccchhHHhHhhhhcCCChhhHHHHHHHHH-----HhhcCCCCChhhHHHH----HHHhhcCCCHHHHHHH
Q 003521 415 AASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVG-----IVNCGIRNDCDPALAL----LSEYVGREDACIRIGA 485 (813)
Q Consensus 415 ~aslGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLG-----li~~g~~~e~d~~~~l----L~~~L~~~~~~v~~gA 485 (813)
+.|++.-..-+...-...+-+.|.+..+.+|.-|+=-.| +-.||-. ..++. |-++|....+.+- |.
T Consensus 591 ~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~----~~l~klg~iLyE~lge~ypEvL-gs 665 (975)
T COG5181 591 LVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGET----KELAKLGNILYENLGEDYPEVL-GS 665 (975)
T ss_pred eeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchH----HHHHHHhHHHHHhcCcccHHHH-HH
Confidence 445555444444443444555566666666655533333 2234322 13333 3445544333332 33
Q ss_pred HHH-HHHHhc----cCC---CHHHHHHHHHhccCCCCchhHHHHHHHHHhhHhcCCCC----HH---HHHHHHHHHhccC
Q 003521 486 IMG-LGISYA----GTQ---NDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCN----EE---VAQAIIFALMDRS 550 (813)
Q Consensus 486 ~lG-LGl~y~----Gs~---~e~i~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~~----~e---~~e~ll~~L~~~~ 550 (813)
+++ +-.+|- .+. -.+++-.|.|+|.+.....++. ..=-+|.|.+-+.. .| +.=.++..|...
T Consensus 666 il~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~n--ti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~- 742 (975)
T COG5181 666 ILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVAN--TIALVGTICMNSPEYIGVREWMRICFELVDSLKSW- 742 (975)
T ss_pred HHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhh--HHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHh-
Confidence 332 222221 111 1256677788886432222321 11123566444321 11 222344433321
Q ss_pred ccccCchhHHHHHHHHHHhh--cCChhhHHHHHHHhhhhhhhhhhhhhHHHHHHH--HhcCCCHHHHHHHHhhhcccCCC
Q 003521 551 ESELGEPLTRLIPLGLGLLY--LGKQESVEATAEVSKTFNEKIRKYCDMTLLSCA--YAGTGNVLKVQNLLGHCAQHHEK 626 (813)
Q Consensus 551 ~~~l~e~~~r~~~lglgLl~--lG~~e~~~~~i~~L~~~~~p~~r~~~~~~~glA--yaGTGn~~~iq~LL~~~~~~~~d 626 (813)
+..+.|.+.-.+|++- .|-++..+.+++-|+. ++...|-+..+++++. |||-=+ ++-.|+.-. ++.+
T Consensus 743 ----nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkv-qeRq~RvctsvaI~iVae~cgpfs--VlP~lm~dY-~TPe- 813 (975)
T COG5181 743 ----NKEIRRNATETFGCISRAIGPQDVLDILLNNLKV-QERQQRVCTSVAISIVAEYCGPFS--VLPTLMSDY-ETPE- 813 (975)
T ss_pred ----hHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchH-HHHHhhhhhhhhhhhhHhhcCchh--hHHHHHhcc-cCch-
Confidence 3457788777777765 4777777777777764 4555666655555443 444333 344444322 1222
Q ss_pred CcchhhHHHHHHHHhhccchhhHHHHH-------HHHHHHhhcCChhHHhHHH---HHHhhhccCCCchhHHH----HHH
Q 003521 627 GEAYQGPAVLGIAMVAMAEELGLEMAI-------RSLEHLLQYGEQNIRRAVP---LALGLLCISNPKVNVMD----TLS 692 (813)
Q Consensus 627 ~~~vrr~AvlglalI~~~~~~g~e~~~-------~~l~~L~~~~~~~VR~g~~---lALGL~~aGt~~~~aid----~L~ 692 (813)
..||.+..=+++|.+ +-+| ++.. .+++--+.+.||.-|..++ --|.|-|.|||..+++= +|.
T Consensus 814 -~nVQnGvLkam~fmF--eyig-~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllw 889 (975)
T COG5181 814 -ANVQNGVLKAMCFMF--EYIG-QASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLW 889 (975)
T ss_pred -hHHHHhHHHHHHHHH--HHHH-HHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhh
Confidence 278888888888865 3344 3322 2333334556777676543 22334488999887763 334
Q ss_pred HhhcCCchHHHH
Q 003521 693 RLSHDTDSEVAM 704 (813)
Q Consensus 693 ~l~~D~d~~Vr~ 704 (813)
+-.-|+.+-|-+
T Consensus 890 pNIle~sPhvi~ 901 (975)
T COG5181 890 PNILEPSPHVIQ 901 (975)
T ss_pred hhccCCCcHHHH
Confidence 444566665544
No 101
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=57.34 E-value=44 Score=34.13 Aligned_cols=76 Identities=18% Similarity=0.177 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchhHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCc-hHHHHHHHH
Q 003521 651 MAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNN-ARIAGMLRN 728 (813)
Q Consensus 651 ~~~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n-~rv~~~Lr~ 728 (813)
.....+...+++.|+.+|+++..++--....+.-....+.+....+|++.+|+.+.--+|.- +|..+ ..+.++|.+
T Consensus 120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~--~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRKEDFDELLEIIEALLKDEEYYVQKAIGWALRE--IGKKDPDEVLEFLQK 196 (213)
T ss_dssp GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHH--HCTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHH--HHHhCHHHHHHHHHH
Confidence 35667777888899999998887765444444445666677788899999999764344333 44444 356667766
No 102
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=53.15 E-value=27 Score=42.21 Aligned_cols=90 Identities=20% Similarity=0.210 Sum_probs=65.7
Q ss_pred cchhhHHHHHHHHhhc-cchhhHHHHHHHHHHHhhcCChhHHhHHHHHHhh--hccCCCchhHHHHHHHhhcCCchHHHH
Q 003521 628 EAYQGPAVLGIAMVAM-AEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGL--LCISNPKVNVMDTLSRLSHDTDSEVAM 704 (813)
Q Consensus 628 ~~vrr~AvlglalI~~-~~~~g~e~~~~~l~~L~~~~~~~VR~g~~lALGL--~~aGt~~~~aid~L~~l~~D~d~~Vr~ 704 (813)
+..+++|.+++--+++ +.+...|-.|-++..+..+.+|.||..+.++||= +|--|--.+.-+.|.+-.+|.+.+||+
T Consensus 910 ~~lq~aA~l~L~klMClS~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~t~yLyrrL~De~~~V~r 989 (1128)
T COG5098 910 EELQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEHTHYLYRRLGDEDADVRR 989 (1128)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHHHHHHHHHhcchhhHHHH
Confidence 3678899888875544 4433334455555666668899999999999984 454455556667788888999999999
Q ss_pred HHHHHHHH-HcCCC
Q 003521 705 AAVISLGL-IGSGT 717 (813)
Q Consensus 705 ~AiiAlGl-V~aGt 717 (813)
+++.-+.+ |++|+
T Consensus 990 tclmti~fLilagq 1003 (1128)
T COG5098 990 TCLMTIHFLILAGQ 1003 (1128)
T ss_pred HHHHHHHHHHHccc
Confidence 99988875 55665
No 103
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.90 E-value=95 Score=39.52 Aligned_cols=73 Identities=15% Similarity=0.232 Sum_probs=58.8
Q ss_pred cChHHHHHHHHhhcccCCCCCc-----HHHHHHHHHHHHccCCHHHHHHHHHh-CCChHHHHHHHHhcchHHHHHHHHH
Q 003521 217 TNFKRTCLYLTSAAKYLPGPDD-----MLVLDIAYMIYLKFEEFPNALQIALF-LDNMQYVKQIFTSCDDLLRKKQFCY 289 (813)
Q Consensus 217 ~~~~rv~~Yl~~~~~~~~~p~~-----~~vl~~~~~iy~~~~~~~~al~~al~-l~d~~~i~~i~~~~~d~~~~~Qlaf 289 (813)
.+-.||..|+-..-+|-.+.-. .++.+-++.||.|++.+.+|+++.|+ .++.|...+.-++|+.|.+=-|+|=
T Consensus 1034 ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlak 1112 (1666)
T KOG0985|consen 1034 ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAK 1112 (1666)
T ss_pred cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHH
Confidence 3457888898888777543221 15889999999999999999999987 6888888888889999988888763
No 104
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.12 E-value=2.9e+02 Score=36.97 Aligned_cols=236 Identities=20% Similarity=0.220 Sum_probs=127.7
Q ss_pred HHhHhhhhcCCChhhH-HHHHHHHHHh-hcCCCCCh----hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhc-c-C-CCHH
Q 003521 430 LAQIDKYFHSTDNHVI-AGALLGVGIV-NCGIRNDC----DPALALLSEYVGREDACIRIGAIMGLGISYA-G-T-QNDQ 500 (813)
Q Consensus 430 l~~l~~yL~s~~~~~k-~GAllaLGli-~~g~~~e~----d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~-G-s-~~e~ 500 (813)
+..|+..++++.++.| +|.+-=|.++ |+|+..+. ..+.......|.++++.+|=-|.=|||++|- | + -.++
T Consensus 820 ~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~ 899 (1702)
T KOG0915|consen 820 LKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKS 899 (1702)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHH
Confidence 3445666677776665 4444445554 67765542 1245555667888899999999999999994 2 2 2357
Q ss_pred HHHHHHHhccCC-----CCchhHHHHHHHHHhhHh-cCCC-CHHHHHHHHHHHhccCc-cccCch---------------
Q 003521 501 IRHKLSTILNDA-----KSPLDVIAFSAISLGLIY-VGSC-NEEVAQAIIFALMDRSE-SELGEP--------------- 557 (813)
Q Consensus 501 i~e~L~~~L~d~-----~~~~e~~~~AaLaLGLi~-lGs~-~~e~~e~ll~~L~~~~~-~~l~e~--------------- 557 (813)
+++.|...|... .++.|.-.+. =|.+. -++| +-..+.++... +++ .| .+=
T Consensus 900 LV~sL~~tl~~Gkr~~~~vs~eTelFq---~G~Lg~Tp~Gg~isTYKELc~L---ASdl~q-PdLVYKFM~LAnh~A~wn 972 (1702)
T KOG0915|consen 900 LVDSLVNTLTGGKRKAIKVSEETELFQ---EGTLGKTPDGGKISTYKELCNL---ASDLGQ-PDLVYKFMQLANHNATWN 972 (1702)
T ss_pred HHHHHHHHHhccccccceeccchhccc---CCcCCCCCCCCcchHHHHHHHH---HhhcCC-hHHHHHHHHHhhhhchhh
Confidence 888888877521 2344432222 24331 2233 33445555542 111 11 111
Q ss_pred hHHHHHHHHHHhhcCChhhHHHHHHHhhhhhhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhcccCCCCcchhhHHHHH
Q 003521 558 LTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLG 637 (813)
Q Consensus 558 ~~r~~~lglgLl~lG~~e~~~~~i~~L~~~~~p~~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~Avlg 637 (813)
-.+++|.|+|-+.-..+++.++.+.. .|-+|..|=-+ .+ ..||+ |...
T Consensus 973 Sk~GaAfGf~~i~~~a~~kl~p~l~k----------------------------LIPrLyRY~yD-P~--~~Vq~-aM~s 1020 (1702)
T KOG0915|consen 973 SKKGAAFGFGAIAKQAGEKLEPYLKK----------------------------LIPRLYRYQYD-PD--KKVQD-AMTS 1020 (1702)
T ss_pred cccchhhchHHHHHHHHHhhhhHHHH----------------------------hhHHHhhhccC-Cc--HHHHH-HHHH
Confidence 23566667766665444443333332 23344444221 11 13333 2333
Q ss_pred HHHhhccchhhHHHHHHH----HHHHh---hcCChhHHhHHHHHHhhhccCCCchhHHHHHHHh-------hcCCchHHH
Q 003521 638 IAMVAMAEELGLEMAIRS----LEHLL---QYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRL-------SHDTDSEVA 703 (813)
Q Consensus 638 lalI~~~~~~g~e~~~~~----l~~L~---~~~~~~VR~g~~lALGL~~aGt~~~~aid~L~~l-------~~D~d~~Vr 703 (813)
|==....++ ..++.+- ++.|+ .+.+=-||-+.|+||.=+-=|-++.++.|.+-.+ +.|--+.||
T Consensus 1021 IW~~Li~D~--k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR 1098 (1702)
T KOG0915|consen 1021 IWNALITDS--KKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVR 1098 (1702)
T ss_pred HHHHhccCh--HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322222333 2444443 33332 2345678999999999998899988888765443 566666677
Q ss_pred HHH
Q 003521 704 MAA 706 (813)
Q Consensus 704 ~~A 706 (813)
-+|
T Consensus 1099 ~aa 1101 (1702)
T KOG0915|consen 1099 EAA 1101 (1702)
T ss_pred HHH
Confidence 554
No 105
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=50.55 E-value=94 Score=30.63 Aligned_cols=66 Identities=15% Similarity=0.190 Sum_probs=41.1
Q ss_pred HHHHHHhcCCCHHHHHHHHH-hcCChhhhHHHhhc----------------cChHHHHHHHHhhcccCCCCCcH----HH
Q 003521 183 EIVAFHMKHNAEPEAVDLLM-EVEDLDLLVEHVDA----------------TNFKRTCLYLTSAAKYLPGPDDM----LV 241 (813)
Q Consensus 183 ~iv~~~l~~n~e~eAvdlal-E~~~ld~i~~~vd~----------------~~~~rv~~Yl~~~~~~~~~p~~~----~v 241 (813)
+-++.++++-.|.+|+|.++ ...+-+.+..++.+ ..-..++.|+ +.+..+|+-+ .+
T Consensus 23 ~~~D~~Lr~F~y~~ALD~aL~~~~~p~~~vavl~EL~~R~~L~~AL~~Rde~~L~piL~Fl---~k~i~~pr~~~~l~~v 99 (148)
T PF09384_consen 23 SKYDKLLRKFRYKKALDAALVKNKSPEVVVAVLEELIRRGALRAALAGRDEESLEPILKFL---IKNITDPRYTRILVDV 99 (148)
T ss_pred hHHHHHHHcCCHHHHHHHHHhcCCChHHHHHHHHHHHHccHHHHHHHhCCHHHHHHHHHHH---HHhCCCcccHHHHHHH
Confidence 45778889999999999999 55555555444321 2223333333 4555667665 45
Q ss_pred HHHHHHHHHc
Q 003521 242 LDIAYMIYLK 251 (813)
Q Consensus 242 l~~~~~iy~~ 251 (813)
..+++++|..
T Consensus 100 ~~~ildiY~~ 109 (148)
T PF09384_consen 100 ANIILDIYSP 109 (148)
T ss_pred HHHHHHHHHH
Confidence 5677777654
No 106
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.35 E-value=6.1e+02 Score=31.82 Aligned_cols=241 Identities=10% Similarity=-0.041 Sum_probs=0.0
Q ss_pred hHHhHhhhhcCCChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHh
Q 003521 429 GLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTI 508 (813)
Q Consensus 429 ~l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~e~i~e~L~~~ 508 (813)
|.+.|.+||-+.+.++|--||=+|+..-.--.+-..-=.....+.|++++..++.-|.-=+=..--.+.=+.+++.|+..
T Consensus 314 ainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~f 393 (866)
T KOG1062|consen 314 AINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEF 393 (866)
T ss_pred HHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Q ss_pred ccCCCCchhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCccccCchhHHHHHHHHHHh-hcCChhhHHHHHHHhhhh
Q 003521 509 LNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLL-YLGKQESVEATAEVSKTF 587 (813)
Q Consensus 509 L~d~~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl-~lG~~e~~~~~i~~L~~~ 587 (813)
|...+.......++.+..-.=-....+.+-++.++.+|..+.+-- +++....+..-++=. ---.+..+..+...+...
T Consensus 394 L~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V-~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~ 472 (866)
T KOG1062|consen 394 LESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFV-NDDVVNNLLRLIANAFQELHEYAVLRLYLALSED 472 (866)
T ss_pred HHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhccccc-chhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhh
Q ss_pred ---hhhhhhhhhHHHHHHHHhc--CCC------------HHHHHHHHhhhcccCCCCcchhhHHHHHHHHhhccchhhHH
Q 003521 588 ---NEKIRKYCDMTLLSCAYAG--TGN------------VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLE 650 (813)
Q Consensus 588 ---~~p~~r~~~~~~~glAyaG--TGn------------~~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e 650 (813)
.-.-.....+++..++=-| .-| ..++..|......+..+ +.++.+|+.++.-+..+-+-..+
T Consensus 473 ~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~-~~tk~yal~Al~KLSsr~~s~~~ 551 (866)
T KOG1062|consen 473 TLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSD-STTKGYALTALLKLSSRFHSSSE 551 (866)
T ss_pred hhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHhhccccHH
Q ss_pred HHHHHHHHHhhcCChhHHhHH
Q 003521 651 MAIRSLEHLLQYGEQNIRRAV 671 (813)
Q Consensus 651 ~~~~~l~~L~~~~~~~VR~g~ 671 (813)
.+.+++..+..+.+..++.-+
T Consensus 552 ri~~lI~~~~~s~~~elQQRa 572 (866)
T KOG1062|consen 552 RIKQLISSYKSSLDTELQQRA 572 (866)
T ss_pred HHHHHHHHhcccccHHHHHHH
No 107
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.63 E-value=1.3e+02 Score=34.25 Aligned_cols=66 Identities=20% Similarity=0.277 Sum_probs=53.4
Q ss_pred HHHHHHhhcCChhHHhHHHHHHhhhccCC--------CchhHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCc
Q 003521 654 RSLEHLLQYGEQNIRRAVPLALGLLCISN--------PKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNN 719 (813)
Q Consensus 654 ~~l~~L~~~~~~~VR~g~~lALGL~~aGt--------~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n 719 (813)
..+-.++.++|+.+||-++-|+|.+..-. .-++++..|-.++.|+++-|+..|-.|++-+.+.|.-
T Consensus 211 pvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Y 284 (550)
T KOG4224|consen 211 PVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEY 284 (550)
T ss_pred hhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchh
Confidence 34445677899999999999999876432 2355778888889999999999999999999988863
No 108
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=48.79 E-value=2.7e+02 Score=27.24 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=8.3
Q ss_pred ccccchhHHhHhhhh
Q 003521 423 LWDVDSGLAQIDKYF 437 (813)
Q Consensus 423 ~~~~~~~l~~l~~yL 437 (813)
.++.+++...+.+-+
T Consensus 44 ~~~~~~A~~~~~~~l 58 (234)
T TIGR02521 44 QGDLEVAKENLDKAL 58 (234)
T ss_pred CCCHHHHHHHHHHHH
Confidence 455666665555444
No 109
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=48.02 E-value=6.2e+02 Score=32.10 Aligned_cols=55 Identities=24% Similarity=0.205 Sum_probs=39.0
Q ss_pred ccCCCHHHHHhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHhcC
Q 003521 34 DEDLSEEDLALKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETM 105 (813)
Q Consensus 34 ~~~lseed~~lk~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye~~ 105 (813)
+..|+.|=++|=.+-..+..| .+ ..-|.+.+.++||... -.|-| |.+|-.+||.-
T Consensus 132 ~~~l~~~l~~ll~eAN~lfar--g~----~eeA~~i~~EvIkqdp----~~~~a-------y~tL~~IyEqr 186 (895)
T KOG2076|consen 132 KSKLAPELRQLLGEANNLFAR--GD----LEEAEEILMEVIKQDP----RNPIA-------YYTLGEIYEQR 186 (895)
T ss_pred ccccCHHHHHHHHHHHHHHHh--CC----HHHHHHHHHHHHHhCc----cchhh-------HHHHHHHHHHc
Confidence 568999888888888888877 22 2578999999999882 12222 55667777755
No 110
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=47.55 E-value=8e+02 Score=32.38 Aligned_cols=125 Identities=19% Similarity=0.161 Sum_probs=64.2
Q ss_pred HHHHHHHhhhhhhhhhhhhhH--HHHHHHHhcCC--CHHHHHHHHhhhcccCCCCcchhhHHHHHHH----Hhhccchhh
Q 003521 577 VEATAEVSKTFNEKIRKYCDM--TLLSCAYAGTG--NVLKVQNLLGHCAQHHEKGEAYQGPAVLGIA----MVAMAEELG 648 (813)
Q Consensus 577 ~~~~i~~L~~~~~p~~r~~~~--~~~glAyaGTG--n~~~iq~LL~~~~~~~~d~~~vrr~Avlgla----lI~~~~~~g 648 (813)
++.++-.|..+++|++|.+-+ ++.=|.|.|-- |......|..|.++. | ...|.+-.=.|. +|..+.-
T Consensus 579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDk--D-w~LR~aFfdsI~gvsi~VG~rs~-- 653 (1431)
T KOG1240|consen 579 VEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDK--D-WRLRGAFFDSIVGVSIFVGWRSV-- 653 (1431)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCc--c-HHHHHHHHhhccceEEEEeeeeH--
Confidence 445555666666777775433 33335555532 333557777777654 2 134443333443 2333311
Q ss_pred HHHHHHHHHHHhhcCChhHHhHHHHHHhhhc-cCC-CchhHHHHH---HHhhcCCchHHHHHH
Q 003521 649 LEMAIRSLEHLLQYGEQNIRRAVPLALGLLC-ISN-PKVNVMDTL---SRLSHDTDSEVAMAA 706 (813)
Q Consensus 649 ~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~-aGt-~~~~aid~L---~~l~~D~d~~Vr~~A 706 (813)
.|-...++.+=+.+++++|--.|--|+-.+| .|. -++-++|++ .+|.-.|+.-||+.+
T Consensus 654 seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~ 716 (1431)
T KOG1240|consen 654 SEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAV 716 (1431)
T ss_pred HHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHH
Confidence 2445555555556677766555555544433 222 223333333 466777888888754
No 111
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=46.91 E-value=2.5e+02 Score=36.05 Aligned_cols=52 Identities=21% Similarity=0.227 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhcCChhh--------------hHHHhhc-cChHHHHHHHHhhc
Q 003521 178 MELVQEIVAFHMKHNAEPEAVDLLMEVEDLDL--------------LVEHVDA-TNFKRTCLYLTSAA 230 (813)
Q Consensus 178 ~~lv~~iv~~~l~~n~e~eAvdlalE~~~ld~--------------i~~~vd~-~~~~rv~~Yl~~~~ 230 (813)
..||...+..++...+|.+|..+. +..|+|+ ++.+|++ ++..-+++++.++-
T Consensus 694 R~LVL~~ir~~Ld~~~Y~~Af~~~-RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~ 760 (928)
T PF04762_consen 694 RALVLAGIRKLLDAKDYKEAFELC-RKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLR 760 (928)
T ss_pred HhHHHHHHHHHHhhccHHHHHHHH-HHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcc
Confidence 478899999999999999999764 5555543 4455655 44466666665544
No 112
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=46.19 E-value=3.5e+02 Score=27.74 Aligned_cols=75 Identities=12% Similarity=-0.026 Sum_probs=43.3
Q ss_pred hhcccccchhHHhHhhhhcC-CChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcCC-CHHHHHHHHHHHHHHhcc
Q 003521 420 MILLWDVDSGLAQIDKYFHS-TDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRE-DACIRIGAIMGLGISYAG 495 (813)
Q Consensus 420 lI~~~~~~~~l~~l~~yL~s-~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~-~~~v~~gA~lGLGl~y~G 495 (813)
....++.+++...+.+.+.. +++....-+.+.+|.++-... +.+.+...+...+... +.....-+.+.+|.++..
T Consensus 43 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~ 119 (235)
T TIGR03302 43 ALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSG-DYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYN 119 (235)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHH
Confidence 35578888898888876652 222223345666666665443 3455888888776532 211112256667777754
No 113
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=46.03 E-value=3.8e+02 Score=30.85 Aligned_cols=88 Identities=17% Similarity=0.146 Sum_probs=63.1
Q ss_pred chhhHHHHHHHHhhccchhhHHHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCC------chhHHHHHH----------
Q 003521 629 AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNP------KVNVMDTLS---------- 692 (813)
Q Consensus 629 ~vrr~AvlglalI~~~~~~g~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~------~~~aid~L~---------- 692 (813)
.++..+-++-|+|+=++|.+.+.+.++++.|.+ +.+...++-+++++..-.+ +...+..|.
T Consensus 250 ~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p 326 (415)
T PF12460_consen 250 ALEILIWITKALVMRGHPLATELLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLP 326 (415)
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHH
Confidence 345567788899999999888888888887665 7888999999998865522 223333332
Q ss_pred ---HhhcCCchHHHHHHHHHHHHHcCCCCc
Q 003521 693 ---RLSHDTDSEVAMAAVISLGLIGSGTNN 719 (813)
Q Consensus 693 ---~l~~D~d~~Vr~~AiiAlGlV~aGt~n 719 (813)
...+..++..+.+-+.|++.+.-..+.
T Consensus 327 ~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~ 356 (415)
T PF12460_consen 327 KLLEGFKEADDEIKSNYLTALSHLLKNVPK 356 (415)
T ss_pred HHHHHHhhcChhhHHHHHHHHHHHHhhCCH
Confidence 112555666888999999999988874
No 114
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=45.46 E-value=2.1e+02 Score=33.45 Aligned_cols=107 Identities=18% Similarity=0.180 Sum_probs=64.0
Q ss_pred HHHHHHHHHhcCCCHHHHH----------HHHHhcCChhhhHHHhhccChHHHHHHHHhhcccCCCCCcHHHHHHHHHHH
Q 003521 180 LVQEIVAFHMKHNAEPEAV----------DLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIY 249 (813)
Q Consensus 180 lv~~iv~~~l~~n~e~eAv----------dlalE~~~ld~i~~~vd~~~~~rv~~Yl~~~~~~~~~p~~~~vl~~~~~iy 249 (813)
.-.++..|.-++|-...|+ +|||++++++.=.++.++.+......-|-..+... -+ ++++-+-|
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~---g~---~~lAe~c~ 370 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQ---GN---IELAEECY 370 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHT---TB---HHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHc---CC---HHHHHHHH
Confidence 3567788888888888887 67888888886666655544333333332222111 01 23455556
Q ss_pred HccCCHHHHHHHHHhCCChHHHHHHHHhc---chHHHHHHHHHHHH
Q 003521 250 LKFEEFPNALQIALFLDNMQYVKQIFTSC---DDLLRKKQFCYILA 292 (813)
Q Consensus 250 ~~~~~~~~al~~al~l~d~~~i~~i~~~~---~d~~~~~Qlaf~la 292 (813)
.+-++|...+-+..-.||.+.++++.+.+ .+..++.|-+|.+.
T Consensus 371 ~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lg 416 (443)
T PF04053_consen 371 QKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLLG 416 (443)
T ss_dssp HHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT
T ss_pred HhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcC
Confidence 66777777777777778887777777665 35566666666664
No 115
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=45.37 E-value=2.9e+02 Score=30.20 Aligned_cols=85 Identities=14% Similarity=0.179 Sum_probs=46.6
Q ss_pred chhhHHHHHHHHhhccchhhHHHHHHHHHHHhhcCChhHHhHHHHHH-------hhhccC--------CCchhHHHHHHH
Q 003521 629 AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLAL-------GLLCIS--------NPKVNVMDTLSR 693 (813)
Q Consensus 629 ~vrr~AvlglalI~~~~~~g~e~~~~~l~~L~~~~~~~VR~g~~lAL-------GL~~aG--------t~~~~aid~L~~ 693 (813)
.+|..++-++|+.++=+.--.+....+|.+..+.+++.||-.+.-++ |..... .+...+.+.|.+
T Consensus 42 ~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~ 121 (298)
T PF12719_consen 42 AVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTK 121 (298)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHH
Confidence 67777777777776655511222223333334455666665544332 222222 223467777777
Q ss_pred hhcCCchHHHHHHHHHHHHH
Q 003521 694 LSHDTDSEVAMAAVISLGLI 713 (813)
Q Consensus 694 l~~D~d~~Vr~~AiiAlGlV 713 (813)
+..+.++.++..|+-+++=+
T Consensus 122 ~l~~~~~~~~~~a~EGl~KL 141 (298)
T PF12719_consen 122 FLDSENPELQAIAVEGLCKL 141 (298)
T ss_pred HHhcCCHHHHHHHHHHHHHH
Confidence 76666777777666666543
No 116
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=43.93 E-value=1e+02 Score=32.92 Aligned_cols=136 Identities=13% Similarity=0.127 Sum_probs=55.2
Q ss_pred CChhhHHHHHHHhhhhhhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhcccCCCCcchhhHHHHHHHHhhccchhhHHH
Q 003521 572 GKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEM 651 (813)
Q Consensus 572 G~~e~~~~~i~~L~~~~~p~~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e~ 651 (813)
|.-+.+..+++.+......-......+..|-.|...|+.......+.-+.....+ +..-..-++-.+|-.|+. +.
T Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~--~~~~~~~l~~~li~~~~~---~~ 198 (280)
T PF13429_consen 124 GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD--DPDARNALAWLLIDMGDY---DE 198 (280)
T ss_dssp T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHCTTCHH---HH
T ss_pred hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHCCCh---HH
Confidence 4444555555554432211112222344555566666655444444443332222 111122233334444544 44
Q ss_pred HHHHHHHHhhc--CChhHHhHHHHHHhhhccCCCchhHHHHHHHhhc-CCchHHHHHHHHHHHHHcCCCC
Q 003521 652 AIRSLEHLLQY--GEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSH-DTDSEVAMAAVISLGLIGSGTN 718 (813)
Q Consensus 652 ~~~~l~~L~~~--~~~~VR~g~~lALGL~~aGt~~~~aid~L~~l~~-D~d~~Vr~~AiiAlGlV~aGt~ 718 (813)
+..++..+... .||.+.. ++|.+....|. ..+++..+.+... +|++..- ...+|-++...+
T Consensus 199 ~~~~l~~~~~~~~~~~~~~~--~la~~~~~lg~-~~~Al~~~~~~~~~~p~d~~~---~~~~a~~l~~~g 262 (280)
T PF13429_consen 199 AREALKRLLKAAPDDPDLWD--ALAAAYLQLGR-YEEALEYLEKALKLNPDDPLW---LLAYADALEQAG 262 (280)
T ss_dssp HHHHHHHHHHH-HTSCCHCH--HHHHHHHHHT--HHHHHHHHHHHHHHSTT-HHH---HHHHHHHHT---
T ss_pred HHHHHHHHHHHCcCHHHHHH--HHHHHhccccc-ccccccccccccccccccccc---cccccccccccc
Confidence 55555555433 2444433 34444444443 3456677666544 4443322 234444444444
No 117
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=43.75 E-value=1.4e+02 Score=27.06 Aligned_cols=62 Identities=31% Similarity=0.524 Sum_probs=45.0
Q ss_pred CCCHHHHHhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHhcCCCcchHHHHH
Q 003521 36 DLSEEDLALKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMA 115 (813)
Q Consensus 36 ~lseed~~lk~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye~~~~~~~k~~~A 115 (813)
-+-+|-.+|++|++.|=+.+ |.+|.+.++|+|..+ |+.-...+..+|+.- .|..++
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qv-e~nPevtr~A~EN~r-------------------L~ee~rrl~~f~~~g----erE~l~ 76 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQV-EHNPEVTRFAMENIR-------------------LREELRRLQSFYVEG----EREMLL 76 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHH-HhCHHHHHHHHHHHH-------------------HHHHHHHHHHHHHhh----HHHHHH
Confidence 34455589999999998888 789999999999642 333344667777432 478888
Q ss_pred HHHHHH
Q 003521 116 DILSVL 121 (813)
Q Consensus 116 dilS~l 121 (813)
-.+|.|
T Consensus 77 ~eis~L 82 (86)
T PF12711_consen 77 QEISEL 82 (86)
T ss_pred HHHHHH
Confidence 878776
No 118
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=42.70 E-value=1.6e+02 Score=35.08 Aligned_cols=94 Identities=17% Similarity=0.270 Sum_probs=53.2
Q ss_pred HHHHHhcCCCHHHHHHHHHhcC----------ChhhhHHHhhc-cChHHHHHHHHhhc-ccCCC--C--Cc----H--HH
Q 003521 184 IVAFHMKHNAEPEAVDLLMEVE----------DLDLLVEHVDA-TNFKRTCLYLTSAA-KYLPG--P--DD----M--LV 241 (813)
Q Consensus 184 iv~~~l~~n~e~eAvdlalE~~----------~ld~i~~~vd~-~~~~rv~~Yl~~~~-~~~~~--p--~~----~--~v 241 (813)
++..++++++..+||.+++..+ .+-.|-+++-+ .--..-..++..+- .++.+ | +. + .|
T Consensus 414 L~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d~V 493 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRDPV 493 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHHHH
Confidence 3347889999999999998865 22333333221 10111122222222 22211 2 11 0 23
Q ss_pred H---HHHHHHHHccCCHHHHHHHHHhCCChHHHHHHHHh
Q 003521 242 L---DIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTS 277 (813)
Q Consensus 242 l---~~~~~iy~~~~~~~~al~~al~l~d~~~i~~i~~~ 277 (813)
- +..+.-.++.+.|..|+..|+++++.|+.-++...
T Consensus 494 ~~~aRRfFhhLLR~~rfekAFlLAvdi~~~DLFmdlh~~ 532 (545)
T PF11768_consen 494 SDLARRFFHHLLRYQRFEKAFLLAVDIGDRDLFMDLHYL 532 (545)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhccchHHHHHHHHH
Confidence 3 33333344567899999999999999998888764
No 119
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=42.47 E-value=5.3e+02 Score=28.80 Aligned_cols=223 Identities=18% Similarity=0.214 Sum_probs=110.5
Q ss_pred CCCHHHHHhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhhh--ccccccCCCc----cchhh-hhHHHHHHHHhcCCCc
Q 003521 36 DLSEEDLALKQQLELYVERVQDPDPGLQKVALESMRTEIRTS--TSSMTSVPKP----LKFLR-PHYGTLKAYYETMPDS 108 (813)
Q Consensus 36 ~lseed~~lk~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~--tss~tsvpkp----lk~l~-~~~~~l~~~ye~~~~~ 108 (813)
+|.|.+.+|. .-++..|++|.-..|-.|++-...+ +..+...|.. .+|.| ...+.|.++|....
T Consensus 38 ~m~e~e~AL~-------kAi~SgD~DLi~~vLl~L~~~l~~s~f~~il~~~p~a~~l~~~~~r~~~~~~L~~~y~q~d-- 108 (319)
T PF04840_consen 38 KMGEDELALN-------KAIESGDTDLIYLVLLHLKRKLSLSQFFKILNQNPVASNLYKKYCREQDRELLKDFYYQED-- 108 (319)
T ss_pred cCCchHHHHH-------HHHHcCCccHHHHHHHHHHHhCCHHHHHHHHHhCcchHHHHHHHHHhccHHHHHHHHHhcc--
Confidence 4556665544 4455788998888888877644432 2233333321 23444 34556777877552
Q ss_pred chHHHHHHH-HHHHHhhccccccccchhhhhcCCCCCCCCcccHHHHHHHHHHHHHHHHh------ccCccCHHHHHHHH
Q 003521 109 DLKKYMADI-LSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKR------QTDEASIDDLMELV 181 (813)
Q Consensus 109 ~~k~~~Adi-lS~l~~t~~~~~~~~~L~y~L~~~~~d~~~wgheYvr~l~~~i~~~y~~~------~~~~~~~~~L~~lv 181 (813)
...-+|-+ +..-+-+-..++..+.|+-+-.. +.-..- +.+ ..+++++..+. .++.....=+..=|
T Consensus 109 -~~~~~a~~~l~~~~~~~~~~~~~~~L~~a~~~--y~~~k~-~~f----~~~~~e~q~~Ll~~Q~~Le~~~~~~f~~~Sl 180 (319)
T PF04840_consen 109 -RFQELANLHLQEALSQKDVEEKISFLKQAQKL--YSKSKN-DAF----EAKLIEEQIKLLEYQKELEEKYNTNFVGLSL 180 (319)
T ss_pred -hHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH--HHhcch-hHH----HHHHHHHHHHHHHHHHHHHHHhccchhcCCH
Confidence 22233332 22211111111122223222221 110100 122 33334432222 11111111111235
Q ss_pred HHHHHHHhcCCCHHHHHHHHH------------------hcCChhhhHHHhhc----cChHHHHHHHHhhc------ccC
Q 003521 182 QEIVAFHMKHNAEPEAVDLLM------------------EVEDLDLLVEHVDA----TNFKRTCLYLTSAA------KYL 233 (813)
Q Consensus 182 ~~iv~~~l~~n~e~eAvdlal------------------E~~~ld~i~~~vd~----~~~~rv~~Yl~~~~------~~~ 233 (813)
...+..|+.+|....|-.+.- +.++.|.|+++..+ -.|.-....+...- .|.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~skKsPIGyepFv~~~~~~~~~~eA~~yI 260 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKSKKSPIGYEPFVEACLKYGNKKEASKYI 260 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhCCCCCCChHHHHHHHHHCCCHHHHHHHH
Confidence 566778888898888876654 45555666655431 12222222222211 010
Q ss_pred CCCCcHHHHHHHHHHHHccCCHHHHHHHHHhCCChHHHHHHHHhcc
Q 003521 234 PGPDDMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCD 279 (813)
Q Consensus 234 ~~p~~~~vl~~~~~iy~~~~~~~~al~~al~l~d~~~i~~i~~~~~ 279 (813)
+.- .- +--++.|.+.++|.+|...|.+.+|.+.+.+|.+.|.
T Consensus 261 ~k~---~~-~~rv~~y~~~~~~~~A~~~A~~~kd~~~L~~i~~~~~ 302 (319)
T PF04840_consen 261 PKI---PD-EERVEMYLKCGDYKEAAQEAFKEKDIDLLKQILKRCP 302 (319)
T ss_pred HhC---Ch-HHHHHHHHHCCCHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 000 01 3456778899999999999999999999999999883
No 120
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.16 E-value=5.2e+02 Score=32.62 Aligned_cols=67 Identities=22% Similarity=0.249 Sum_probs=51.2
Q ss_pred cCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh----cCChhhhHHHhhccChHHHHHHHHhhcccCCCCCc
Q 003521 172 ASIDDLMELVQEIVAFHMKHNAEPEAVDLLME----VEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDD 238 (813)
Q Consensus 172 ~~~~~L~~lv~~iv~~~l~~n~e~eAvdlalE----~~~ld~i~~~vd~~~~~rv~~Yl~~~~~~~~~p~~ 238 (813)
.+.+.++++...-=.|+.+.|++.+|++--+| ++--+.|.+|.|...-..++.||......-....|
T Consensus 362 ~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~d 432 (933)
T KOG2114|consen 362 LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLANSD 432 (933)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccccch
Confidence 34567888888888899999999999999998 34456677888877778888888877665444433
No 121
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=41.77 E-value=1e+02 Score=38.51 Aligned_cols=102 Identities=14% Similarity=0.075 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCch----hHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHH
Q 003521 650 EMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV----NVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGM 725 (813)
Q Consensus 650 e~~~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~~~----~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~ 725 (813)
+-+++.+....+. +--.|+....++..+--==|+. .....+..+++|+++.||.|+.-.+--++-.-..+.....
T Consensus 557 ~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~ 635 (759)
T KOG0211|consen 557 EEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEE 635 (759)
T ss_pred HhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHH
Confidence 3455555555553 4567888888887543211222 2233456778999999999999999888877665554555
Q ss_pred HHHHhhhhc--cChhhHHHHHHHHhhhhc
Q 003521 726 LRNLSSYYY--KDANLLFCVRIAQGLVHM 752 (813)
Q Consensus 726 Lr~l~~~~~--~d~~~~f~~~lAqGll~~ 752 (813)
++++..... .|.+.+|.+..|+|.+.+
T Consensus 636 v~pll~~L~~d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 636 VLPLLETLSSDQELDVRYRAILAFGSIEL 664 (759)
T ss_pred HHHHHHHhccCcccchhHHHHHHHHHHHH
Confidence 555444443 556799999999998865
No 122
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=41.63 E-value=1.1e+02 Score=38.06 Aligned_cols=98 Identities=13% Similarity=0.145 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhcCChhhhHHHhhccChHHHHHHHHhhcccC-CCCCc---HHHHHHHHHHHHccCC
Q 003521 179 ELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYL-PGPDD---MLVLDIAYMIYLKFEE 254 (813)
Q Consensus 179 ~lv~~iv~~~l~~n~e~eAvdlalE~~~ld~i~~~vd~~~~~rv~~Yl~~~~~~~-~~p~~---~~vl~~~~~iy~~~~~ 254 (813)
+|+.++-+||..|.+|.-||.+++-++...--.+.....|..-.-.+-.-+.+.- -.|.. .+||+.+-+.++++|.
T Consensus 1081 ~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~ 1160 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGA 1160 (1416)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccc
Confidence 7889999999999999999999999998876666665544432222222222211 11222 2799999999999998
Q ss_pred HHHHHHHHHhCCChH-HHHHHHH
Q 003521 255 FPNALQIALFLDNMQ-YVKQIFT 276 (813)
Q Consensus 255 ~~~al~~al~l~d~~-~i~~i~~ 276 (813)
|..|....-+.+|.- ..+.+++
T Consensus 1161 Yh~AtKKfTQAGdKl~AMraLLK 1183 (1416)
T KOG3617|consen 1161 YHAATKKFTQAGDKLSAMRALLK 1183 (1416)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHh
Confidence 887777666665543 3334444
No 123
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.46 E-value=47 Score=40.22 Aligned_cols=120 Identities=15% Similarity=0.165 Sum_probs=70.9
Q ss_pred hhh-HHHHHHHhhhhcccccch----hHHhHhhhhcCCChhhHHHHHHHHHHhhcCCCCChhh----HHHHHHHhhcCCC
Q 003521 408 EHG-KMSAAASLGMILLWDVDS----GLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDP----ALALLSEYVGRED 478 (813)
Q Consensus 408 ~~~-k~sA~aslGlI~~~~~~~----~l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~d~----~~~lL~~~L~~~~ 478 (813)
+|. |-..+|++++.-.--.++ .+.+|++.|.++.=.+|-.+++|+|.|.-|-.+-.-| .+.+|.+.|+++.
T Consensus 368 dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKk 447 (885)
T KOG2023|consen 368 DWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKK 447 (885)
T ss_pred cccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCc
Confidence 353 455567788755322233 3445556666655568889999999998775543222 5566777788888
Q ss_pred HHHHHHHHHHHHH----HhccCCCHH---HHHHHHHhccCCCCchhHHHHHHHHHhhH
Q 003521 479 ACIRIGAIMGLGI----SYAGTQNDQ---IRHKLSTILNDAKSPLDVIAFSAISLGLI 529 (813)
Q Consensus 479 ~~v~~gA~lGLGl----~y~Gs~~e~---i~e~L~~~L~d~~~~~e~~~~AaLaLGLi 529 (813)
+.+|.-.|--|+= +..-+.++- +++-|+..+.|+ +-.|+-+||.|..-.
T Consensus 448 plVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~--NK~VQEAAcsAfAtl 503 (885)
T KOG2023|consen 448 PLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDS--NKKVQEAACSAFATL 503 (885)
T ss_pred cceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcc--cHHHHHHHHHHHHHH
Confidence 8888877766653 111222222 333333334466 444555788777654
No 124
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=39.62 E-value=2e+02 Score=37.48 Aligned_cols=132 Identities=17% Similarity=0.199 Sum_probs=78.1
Q ss_pred HhhhhcCCChhhHHHHHHHHHHhhc--CCCCChhhHHHHHHHhhcCCCHHHHHHHH---HHHHHHhccCC--CHHHHHHH
Q 003521 433 IDKYFHSTDNHVIAGALLGVGIVNC--GIRNDCDPALALLSEYVGREDACIRIGAI---MGLGISYAGTQ--NDQIRHKL 505 (813)
Q Consensus 433 l~~yL~s~~~~~k~GAllaLGli~~--g~~~e~d~~~~lL~~~L~~~~~~v~~gA~---lGLGl~y~Gs~--~e~i~e~L 505 (813)
...+|..+++++|-..+-.++-... |.....|-++..|..||++++...|.+-. .|+. +|+|.. .+-++-+|
T Consensus 583 v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvs-i~VG~rs~seyllPLl 661 (1431)
T KOG1240|consen 583 VSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVS-IFVGWRSVSEYLLPLL 661 (1431)
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceE-EEEeeeeHHHHHHHHH
Confidence 3455667778999888888775543 55555677999999999999877776433 3332 478876 34444444
Q ss_pred HHhccCCCCchhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhc--cCccccCchhHHHHHHHHHHhh
Q 003521 506 STILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMD--RSESELGEPLTRLIPLGLGLLY 570 (813)
Q Consensus 506 ~~~L~d~~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~--~~~~~l~e~~~r~~~lglgLl~ 570 (813)
.+-|.|.+...-+....++. +|+-.|-=...++-+|++...- .+++ .|+|-+++++=..-
T Consensus 662 ~Q~ltD~EE~Viv~aL~~ls-~Lik~~ll~K~~v~~i~~~v~PlL~hPN----~WIR~~~~~iI~~~ 723 (1431)
T KOG1240|consen 662 QQGLTDGEEAVIVSALGSLS-ILIKLGLLRKPAVKDILQDVLPLLCHPN----LWIRRAVLGIIAAI 723 (1431)
T ss_pred HHhccCcchhhHHHHHHHHH-HHHHhcccchHHHHHHHHhhhhheeCch----HHHHHHHHHHHHHH
Confidence 44455654222222233333 4555555455555555553211 2343 49998887664333
No 125
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=39.16 E-value=3.5e+02 Score=25.80 Aligned_cols=91 Identities=20% Similarity=0.207 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCccccCchhHHHHHHHHHHhhc--CChhhHHHHHHHhhhhhhhhhhhh
Q 003521 518 VIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYL--GKQESVEATAEVSKTFNEKIRKYC 595 (813)
Q Consensus 518 ~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~l--G~~e~~~~~i~~L~~~~~p~~r~~ 595 (813)
....|.|.++-+++..++-+.+...++.+.+.. . ...+...+-+.+|.+++ |+-+.+-.++ ....++..+.-
T Consensus 46 ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~--~-d~~l~~~a~l~LA~~~~~~~~~d~Al~~L---~~~~~~~~~~~ 119 (145)
T PF09976_consen 46 YAALAALQLAKAAYEQGDYDEAKAALEKALANA--P-DPELKPLARLRLARILLQQGQYDEALATL---QQIPDEAFKAL 119 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--C-CHHHHHHHHHHHHHHHHHcCCHHHHHHHH---HhccCcchHHH
Confidence 445788888888888888777777777665432 1 23344455556666665 3333444444 33334344444
Q ss_pred hHHHHHHHHhcCCCHHHHH
Q 003521 596 DMTLLSCAYAGTGNVLKVQ 614 (813)
Q Consensus 596 ~~~~~glAyaGTGn~~~iq 614 (813)
.....|-+|..-|+.....
T Consensus 120 ~~~~~Gdi~~~~g~~~~A~ 138 (145)
T PF09976_consen 120 AAELLGDIYLAQGDYDEAR 138 (145)
T ss_pred HHHHHHHHHHHCCCHHHHH
Confidence 5566777777777655433
No 126
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=38.76 E-value=1.9e+02 Score=26.29 Aligned_cols=81 Identities=20% Similarity=0.149 Sum_probs=53.2
Q ss_pred HHhHhhhhcCCChhhHHHHHHHHHH-hhcCC-C-CChhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCHHHHHHHH
Q 003521 430 LAQIDKYFHSTDNHVIAGALLGVGI-VNCGI-R-NDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLS 506 (813)
Q Consensus 430 l~~l~~yL~s~~~~~k~GAllaLGl-i~~g~-~-~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~e~i~e~L~ 506 (813)
+...-.++.++...+|+.++.-|.- +.... . -..+.++.++...|.++++++=..|+=||....- ...++++..|.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~-~~p~~vl~~L~ 83 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD-RHPDEVLPILL 83 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH-HChHHHHHHHH
Confidence 3444456677888999999888764 33333 1 1224577888888999998888888888776422 22345777776
Q ss_pred HhccC
Q 003521 507 TILND 511 (813)
Q Consensus 507 ~~L~d 511 (813)
....|
T Consensus 84 ~~y~~ 88 (92)
T PF10363_consen 84 DEYAD 88 (92)
T ss_pred HHHhC
Confidence 65443
No 127
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=38.54 E-value=6.8e+02 Score=30.49 Aligned_cols=154 Identities=18% Similarity=0.086 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhccCccccCchhHHHHHHH-HHHhhcCCh----hhHHHHHHHhhh---hhhhhhhhhhHHHHHHHHhcCC
Q 003521 537 EVAQAIIFALMDRSESELGEPLTRLIPLG-LGLLYLGKQ----ESVEATAEVSKT---FNEKIRKYCDMTLLSCAYAGTG 608 (813)
Q Consensus 537 e~~e~ll~~L~~~~~~~l~e~~~r~~~lg-lgLl~lG~~----e~~~~~i~~L~~---~~~p~~r~~~~~~~glAyaGTG 608 (813)
+.++.++..+....++ +++-+|+=++. +++++=.-+ ..+..+++.|.. +.+|++|..++.++.-----||
T Consensus 87 ~~V~~~~~h~lRg~es--kdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 87 ELVAGTFYHLLRGTES--KDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred HHHHHHHHHHHhcccC--cchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 3445555544433333 67777776664 366654322 234455555542 3578888888777644444466
Q ss_pred CH--HHHHHHHhhhcccCCCCcchhhHHHHHHHHhhccchhhHHH---------------HHHHHH-----------HH-
Q 003521 609 NV--LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEM---------------AIRSLE-----------HL- 659 (813)
Q Consensus 609 n~--~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e~---------------~~~~l~-----------~L- 659 (813)
|. ..+..|+.....|.++ .|||.|.+.|.-=-.--|--.|. +..-++ .|
T Consensus 165 neen~~~n~l~~~vqnDPS~--EVRr~allni~vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~l~ 242 (885)
T COG5218 165 NEENRIVNLLKDIVQNDPSD--EVRRLALLNISVDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRILLM 242 (885)
T ss_pred ChHHHHHHHHHHHHhcCcHH--HHHHHHHHHeeeCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceehhh
Confidence 64 3556666777777777 89999888653211111100011 111110 01
Q ss_pred ---hhcCChhHHhHHHHHHhhhccCCCchhHHHHHHHh
Q 003521 660 ---LQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRL 694 (813)
Q Consensus 660 ---~~~~~~~VR~g~~lALGL~~aGt~~~~aid~L~~l 694 (813)
+.+.+-.||.++.=+++-.+.-+.+.+++++|+++
T Consensus 243 ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~lveLle~l 280 (885)
T COG5218 243 EWGLLDREFSVKGALVDAIASAWRIPEDLRLVELLEFL 280 (885)
T ss_pred hhcchhhhhhHHHHHHHHHHHHhcccccccHHHHHHHH
Confidence 12335667777777888777788888889888886
No 128
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=38.36 E-value=76 Score=30.34 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=21.8
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHHcC
Q 003521 687 VMDTLSRLSHDTDSEVAMAAVISLGLIGS 715 (813)
Q Consensus 687 aid~L~~l~~D~d~~Vr~~AiiAlGlV~a 715 (813)
+-+.+..+++++|+.||..|+.++..++.
T Consensus 87 ~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 87 AKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 33456677788999999999999887754
No 129
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=37.75 E-value=1e+02 Score=36.71 Aligned_cols=138 Identities=20% Similarity=0.185 Sum_probs=85.0
Q ss_pred ChhHHHHHHHHHHHHHhhhccccccCC--Cccchh-------hhhHHHHHHHHhcC-------CCcchHHHHHHHHHHHH
Q 003521 59 DPGLQKVALESMRTEIRTSTSSMTSVP--KPLKFL-------RPHYGTLKAYYETM-------PDSDLKKYMADILSVLA 122 (813)
Q Consensus 59 d~~l~~~aL~~L~~~i~~~tss~tsvp--kplk~l-------~~~~~~l~~~ye~~-------~~~~~k~~~AdilS~l~ 122 (813)
+.++...||.+|.+-|++...=.-.|+ ++-+|- ..|...++++|=+. .++ -+-..|.|||
T Consensus 365 Neg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dp----dvQ~~LGVLy 440 (579)
T KOG1125|consen 365 NEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDP----DVQSGLGVLY 440 (579)
T ss_pred hhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCCh----hHHhhhHHHH
Confidence 457888999999999998844222222 123322 34566666666322 222 2334577776
Q ss_pred hhccccccc---cchhhhhcCCCCCCCCcccHHHHHHH-----HHHHHHHHHhccCccCHHHHHHHHHHHHHHHhcCCCH
Q 003521 123 LTMSAEGER---ESLKYRLLGSEGDIGSWGHEYVRNLA-----GEIAQEYAKRQTDEASIDDLMELVQEIVAFHMKHNAE 194 (813)
Q Consensus 123 ~t~~~~~~~---~~L~y~L~~~~~d~~~wgheYvr~l~-----~~i~~~y~~~~~~~~~~~~L~~lv~~iv~~~l~~n~e 194 (813)
|-.++++ ||++.+|.=.-.|-.-| .-+=-+|+ .|.|..|++..+=.+.--|-.- -+==-||.-|+|
T Consensus 441 --~ls~efdraiDcf~~AL~v~Pnd~~lW-NRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~Ry---NlgIS~mNlG~y 514 (579)
T KOG1125|consen 441 --NLSGEFDRAVDCFEAALQVKPNDYLLW-NRLGATLANGNRSEEAISAYNRALQLQPGYVRVRY---NLGISCMNLGAY 514 (579)
T ss_pred --hcchHHHHHHHHHHHHHhcCCchHHHH-HHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeeh---hhhhhhhhhhhH
Confidence 5555554 78999999766677778 66667776 5788999876543332100000 011136667999
Q ss_pred HHHHHHHHhcCC
Q 003521 195 PEAVDLLMEVED 206 (813)
Q Consensus 195 ~eAvdlalE~~~ 206 (813)
.||+..+|++=.
T Consensus 515 kEA~~hlL~AL~ 526 (579)
T KOG1125|consen 515 KEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHHHH
Confidence 999999998743
No 130
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=37.07 E-value=64 Score=22.22 Aligned_cols=24 Identities=33% Similarity=0.290 Sum_probs=17.5
Q ss_pred HHHHHHHHhhHhcCCCCHHHHHHHHHHH
Q 003521 519 IAFSAISLGLIYVGSCNEEVAQAIIFAL 546 (813)
Q Consensus 519 ~~~AaLaLGLi~lGs~~~e~~e~ll~~L 546 (813)
.+.|+.+||-+ +++++++.|++.|
T Consensus 2 R~~Aa~aLg~i----gd~~ai~~L~~~L 25 (27)
T PF03130_consen 2 RRAAARALGQI----GDPRAIPALIEAL 25 (27)
T ss_dssp HHHHHHHHGGG-----SHHHHHHHHHHH
T ss_pred HHHHHHHHHHc----CCHHHHHHHHHHh
Confidence 45688888877 6778888877765
No 131
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.59 E-value=49 Score=36.66 Aligned_cols=78 Identities=29% Similarity=0.503 Sum_probs=54.8
Q ss_pred cCCCHHHHH-hHHHHHHHHH--HhCCCChhHHHHHHHHHHHHHhhhcc--ccccCCCccchhhhhHHHHHHHHhcCCCcc
Q 003521 35 EDLSEEDLA-LKQQLELYVE--RVQDPDPGLQKVALESMRTEIRTSTS--SMTSVPKPLKFLRPHYGTLKAYYETMPDSD 109 (813)
Q Consensus 35 ~~lseed~~-lk~~l~~~v~--~l~e~d~~l~~~aL~~L~~~i~~~ts--s~tsvpkplk~l~~~~~~l~~~ye~~~~~~ 109 (813)
+++||||.. |=.|| ++.. +=.|+|+.+++--||.|..+.-|-.+ .+-+ +.-|+.|.++|+-.++++
T Consensus 231 ee~sEEdm~~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~--------kgvYpilRElhk~e~ded 301 (353)
T KOG2973|consen 231 EELSEEDMAKLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRS--------KGVYPILRELHKWEEDED 301 (353)
T ss_pred cccCHHHHhcCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHh--------cCchHHHHHHhcCCCcHH
Confidence 599999963 44566 3333 55689999999999999887766533 2222 245999999999887776
Q ss_pred hHHHHHHHHHHH
Q 003521 110 LKKYMADILSVL 121 (813)
Q Consensus 110 ~k~~~AdilS~l 121 (813)
.++.+=-+.+++
T Consensus 302 ~~~ace~vvq~L 313 (353)
T KOG2973|consen 302 IREACEQVVQML 313 (353)
T ss_pred HHHHHHHHHHHH
Confidence 566555556655
No 132
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=36.31 E-value=65 Score=37.33 Aligned_cols=124 Identities=21% Similarity=0.329 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHhccCc-----------------------cCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCChhh
Q 003521 153 VRNLAGEIAQEYAKRQTDE-----------------------ASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDL 209 (813)
Q Consensus 153 vr~l~~~i~~~y~~~~~~~-----------------------~~~~~L~~lv~~iv~~~l~~n~e~eAvdlalE~~~ld~ 209 (813)
+.+|..++-..|+...... ++++++.+++..+-+|. +++-||.+|-+.
T Consensus 201 l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYi---------lgl~iEl~Rr~l 271 (422)
T PF06957_consen 201 LSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYI---------LGLSIELERREL 271 (422)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHH---------HHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhc
Confidence 4567777777787655432 12334444444444432 466777766553
Q ss_pred hHHHhhccChHHHH---HHHHhhcccCCCCCcH-HHHHHHHHHHHccCCHHHHHHHHHh---CCCh----HHHHHHHHhc
Q 003521 210 LVEHVDATNFKRTC---LYLTSAAKYLPGPDDM-LVLDIAYMIYLKFEEFPNALQIALF---LDNM----QYVKQIFTSC 278 (813)
Q Consensus 210 i~~~vd~~~~~rv~---~Yl~~~~~~~~~p~~~-~vl~~~~~iy~~~~~~~~al~~al~---l~d~----~~i~~i~~~~ 278 (813)
-..-++ +-+|.| .|...|- ..|... -.|+++..++.|.++|..|-..|=+ ++-. +..++|+..|
T Consensus 272 ~~~~~~--~~kR~lELAAYFThc~---LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~qArKil~~~ 346 (422)
T PF06957_consen 272 PKDPVE--DQKRNLELAAYFTHCK---LQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQARKILQAC 346 (422)
T ss_dssp -TTTHH--HHHHHHHHHHHHCCS------HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHHHHHHH
T ss_pred cccchh--hHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 222221 234444 6655443 233333 5899999999999999988866644 4311 3566677766
Q ss_pred c-hHHHHHHHHHH
Q 003521 279 D-DLLRKKQFCYI 290 (813)
Q Consensus 279 ~-d~~~~~Qlaf~ 290 (813)
+ ++.-+.||-|+
T Consensus 347 e~~~tDa~~i~yD 359 (422)
T PF06957_consen 347 ERNPTDAHEIDYD 359 (422)
T ss_dssp CCS--BSS--S--
T ss_pred hcCCCCceecCCC
Confidence 3 44445555554
No 133
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=36.20 E-value=7e+02 Score=28.40 Aligned_cols=24 Identities=17% Similarity=0.081 Sum_probs=13.0
Q ss_pred HHHHHHHhhcCChhhHHHHHHHhh
Q 003521 562 IPLGLGLLYLGKQESVEATAEVSK 585 (813)
Q Consensus 562 ~~lglgLl~lG~~e~~~~~i~~L~ 585 (813)
.+.+..++..|..+++...++...
T Consensus 267 ~~~a~~l~~~g~~~~A~~~l~~~l 290 (409)
T TIGR00540 267 IALAEHLIDCDDHDSAQEIIFDGL 290 (409)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHH
Confidence 344555666666666655555433
No 134
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=34.73 E-value=61 Score=23.44 Aligned_cols=27 Identities=22% Similarity=0.149 Sum_probs=24.2
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHH
Q 003521 48 LELYVERVQDPDPGLQKVALESMRTEI 74 (813)
Q Consensus 48 l~~~v~~l~e~d~~l~~~aL~~L~~~i 74 (813)
++.++..|+.+|+++++.|+..|+++.
T Consensus 14 i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 14 LPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 788999999999999999999998764
No 135
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=34.43 E-value=31 Score=38.41 Aligned_cols=84 Identities=15% Similarity=0.138 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhhccccc------cccchhhhhcC-CCCCCCCcccHHHHHHHHHHHHHHHHhccCccC-HHHHHHHHH
Q 003521 111 KKYMADILSVLALTMSAEG------ERESLKYRLLG-SEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEAS-IDDLMELVQ 182 (813)
Q Consensus 111 k~~~AdilS~l~~t~~~~~------~~~~L~y~L~~-~~~d~~~wgheYvr~l~~~i~~~y~~~~~~~~~-~~~L~~lv~ 182 (813)
++-=|..++.|+++-|++- +-.+|.|.+.. ...|...| .++..+|--++.+.|++.++-=.. -..+.++.+
T Consensus 212 ~E~EANFiayLac~~s~d~~frYSgy~~~l~y~l~~l~~~d~e~~-~~l~~~l~~~v~~d~~~~~~fW~~y~~~i~~~~~ 290 (318)
T PF12725_consen 212 SEDEANFIAYLACINSPDPYFRYSGYLFALRYCLNALYRKDPEAY-KELYSQLSPGVKKDLKENRAFWQKYEGPIEEVSD 290 (318)
T ss_pred CHHHHHHHHHHHHhcCCChheeHHHHHHHHHHHHHHHHhcCHHHH-HHHHHhCCHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 4566888999998777652 44678888887 45788887 788888888888877765431000 125677888
Q ss_pred HHHHHHhcCCCHH
Q 003521 183 EIVAFHMKHNAEP 195 (813)
Q Consensus 183 ~iv~~~l~~n~e~ 195 (813)
.+.+-++|.|.-+
T Consensus 291 ~~yd~yLKaN~q~ 303 (318)
T PF12725_consen 291 FVYDTYLKANNQE 303 (318)
T ss_pred HHHHHHHHhcCch
Confidence 8999999988543
No 136
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=34.26 E-value=6e+02 Score=32.23 Aligned_cols=81 Identities=17% Similarity=0.158 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCC----chhHHHHHH----HhhcCCchHHHHHHHHHHHHHcCCCCchH
Q 003521 650 EMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNP----KVNVMDTLS----RLSHDTDSEVAMAAVISLGLIGSGTNNAR 721 (813)
Q Consensus 650 e~~~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~----~~~aid~L~----~l~~D~d~~Vr~~AiiAlGlV~aGt~n~r 721 (813)
+...+.+...+..++|-+|...-..++-....++ ....++++- +.++|.+.+||.+|.-++|-|+-=.+...
T Consensus 370 ~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~ 449 (815)
T KOG1820|consen 370 SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEV 449 (815)
T ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHH
Confidence 4444455555556899999887777776555544 344455443 34689999999999999998886666666
Q ss_pred HHHHHHHHh
Q 003521 722 IAGMLRNLS 730 (813)
Q Consensus 722 v~~~Lr~l~ 730 (813)
+.++|..+.
T Consensus 450 ~~k~L~~~~ 458 (815)
T KOG1820|consen 450 FKKLLKDLD 458 (815)
T ss_pred HHHHHHhhc
Confidence 666666654
No 137
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=33.90 E-value=4.3e+02 Score=27.09 Aligned_cols=90 Identities=16% Similarity=0.106 Sum_probs=56.6
Q ss_pred cCChhHHhHHHHHHhhhccCCC-chhH-HHHHHHhhcCCchHHHHHHHHHHHHHcCCCC--chH------HHHHHHHHhh
Q 003521 662 YGEQNIRRAVPLALGLLCISNP-KVNV-MDTLSRLSHDTDSEVAMAAVISLGLIGSGTN--NAR------IAGMLRNLSS 731 (813)
Q Consensus 662 ~~~~~VR~g~~lALGL~~aGt~-~~~a-id~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~--n~r------v~~~Lr~l~~ 731 (813)
+.+..||..+--+|--++-..+ ..++ ...+....++.+..||..+.-.+..+.-..+ .+. +.++.+.+.+
T Consensus 105 ~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~ 184 (228)
T PF12348_consen 105 DSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVK 184 (228)
T ss_dssp ---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHH
Confidence 4578899999998888877777 6777 8889999999999999998888888776655 111 2334444443
Q ss_pred hh-ccChhhHHHHHHHHhhhh
Q 003521 732 YY-YKDANLLFCVRIAQGLVH 751 (813)
Q Consensus 732 ~~-~~d~~~~f~~~lAqGll~ 751 (813)
.. ..+|.+|-.++-+...++
T Consensus 185 ~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 185 LLSDADPEVREAARECLWALY 205 (228)
T ss_dssp HHTSS-HHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHH
Confidence 32 346677777777766653
No 138
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=33.46 E-value=71 Score=41.04 Aligned_cols=87 Identities=20% Similarity=0.201 Sum_probs=61.8
Q ss_pred cchhhHHHHHHHHhhc-cchhhHHHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCch--hHHHHHHHhhcCCchHHHH
Q 003521 628 EAYQGPAVLGIAMVAM-AEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV--NVMDTLSRLSHDTDSEVAM 704 (813)
Q Consensus 628 ~~vrr~AvlglalI~~-~~~~g~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~~~--~aid~L~~l~~D~d~~Vr~ 704 (813)
|..+++|.+++|=.++ +.+...+..+-+|.-+..+.+|.||....+|+|=+-..-||. .-.+-|.+..+|++..||.
T Consensus 937 p~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D~~~~vRk 1016 (1251)
T KOG0414|consen 937 PELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRDESPSVRK 1016 (1251)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHHHhcCccHHHHH
Confidence 4689999999997665 333333445555566666899999999999998543333321 2223567778999999999
Q ss_pred HHHHHHHHHc
Q 003521 705 AAVISLGLIG 714 (813)
Q Consensus 705 ~AiiAlGlV~ 714 (813)
+|+.-|..+.
T Consensus 1017 ta~lvlshLI 1026 (1251)
T KOG0414|consen 1017 TALLVLSHLI 1026 (1251)
T ss_pred HHHHHHHHHH
Confidence 9998887654
No 139
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=33.16 E-value=2e+02 Score=26.05 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=30.9
Q ss_pred hhHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 003521 685 VNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRN 728 (813)
Q Consensus 685 ~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~Lr~ 728 (813)
..+++++....+|+|++|=.+||=+++-+.-..++.-+..++++
T Consensus 42 ~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~~~ 85 (92)
T PF10363_consen 42 PKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPILLDE 85 (92)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 45667777888999999999999888777555544333444443
No 140
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=32.64 E-value=58 Score=31.59 Aligned_cols=49 Identities=24% Similarity=0.224 Sum_probs=29.9
Q ss_pred CCHHHHHhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHh
Q 003521 37 LSEEDLALKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYE 103 (813)
Q Consensus 37 lseed~~lk~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye 103 (813)
=|+|||+||-+...-| ++.|...+..+++--.+ .+.++.|++.|++.-+
T Consensus 14 DS~~DQ~lKl~VRD~V--------------l~~l~~~~~~~~~~~ea----~~~i~~~~~~Ie~~A~ 62 (130)
T PF09551_consen 14 DSPEDQALKLKVRDAV--------------LEYLSPWLSQAKSKEEA----REVIRENLPEIEQIAE 62 (130)
T ss_pred CCHHHHHHHHHHHHHH--------------HHHHHHHhccCCCHHHH----HHHHHHhHHHHHHHHH
Confidence 4899999998865433 34444444444332222 5667777888877744
No 141
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=32.31 E-value=1.1e+02 Score=36.88 Aligned_cols=104 Identities=18% Similarity=0.170 Sum_probs=57.7
Q ss_pred HHHHHHHHhhhcccCCCCcchhhHHHHHHHHhhccchhhHHHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchhHHH
Q 003521 610 VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMD 689 (813)
Q Consensus 610 ~~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~~~~aid 689 (813)
..++..+++.|.++. ..||..|+=+|-.++-.++--...+.+++.+|++..++..+-.|--||--+.--.|....-.
T Consensus 58 ~~Ai~a~~DLcEDed---~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~ 134 (556)
T PF05918_consen 58 EEAINAQLDLCEDED---VQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTG 134 (556)
T ss_dssp HHHHHHHHHHHT-SS---HHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHhccc---HHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 457888999986432 27888888899998877662224455666678888888888888887765544444433333
Q ss_pred HHHHhh--cCCchHHHHHHH--HHHHHHcCC
Q 003521 690 TLSRLS--HDTDSEVAMAAV--ISLGLIGSG 716 (813)
Q Consensus 690 ~L~~l~--~D~d~~Vr~~Ai--iAlGlV~aG 716 (813)
++.... ...|+.||..++ |+.-+.-.+
T Consensus 135 lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~ 165 (556)
T PF05918_consen 135 LFSQIESSKSGDEQVRERALKFLREKLKPLK 165 (556)
T ss_dssp HHHHHH---HS-HHHHHHHHHHHHHHGGGS-
T ss_pred HHHHHHhcccCchHHHHHHHHHHHHHHhhCc
Confidence 344443 233556776655 444444444
No 142
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=29.93 E-value=9.9e+02 Score=28.28 Aligned_cols=236 Identities=15% Similarity=0.207 Sum_probs=117.1
Q ss_pred HhhhhcCCChhhHHHHHHHHHHhhcCCCC-----ChhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCHH---H---
Q 003521 433 IDKYFHSTDNHVIAGALLGVGIVNCGIRN-----DCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQ---I--- 501 (813)
Q Consensus 433 l~~yL~s~~~~~k~GAllaLGli~~g~~~-----e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~e~---i--- 501 (813)
+..-|.++++.+|.-++-.+|-+...... ....++..+...+.+++..+.-.|+-.|.-+.- .... +
T Consensus 82 L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~--~~~~~~~l~~~ 159 (503)
T PF10508_consen 82 LQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS--HPEGLEQLFDS 159 (503)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC--CchhHHHHhCc
Confidence 44446688999999999998876432210 011256667777888877777666666665432 2221 2
Q ss_pred --HHHHHHhccCCCCchhHHHHHHHHHhhHhcCCCCHHHHHHHH-----HHHhccCccccCchhHHHHHHH---------
Q 003521 502 --RHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAII-----FALMDRSESELGEPLTRLIPLG--------- 565 (813)
Q Consensus 502 --~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll-----~~L~~~~~~~l~e~~~r~~~lg--------- 565 (813)
...|.+.+..++ +..+.-.+.+ ++.+++.+++..+.+. +.+...-++ ++...+.-++-
T Consensus 160 ~~~~~L~~l~~~~~---~~vR~Rv~el-~v~i~~~S~~~~~~~~~sgll~~ll~eL~~--dDiLvqlnalell~~La~~~ 233 (503)
T PF10508_consen 160 NLLSKLKSLMSQSS---DIVRCRVYEL-LVEIASHSPEAAEAVVNSGLLDLLLKELDS--DDILVQLNALELLSELAETP 233 (503)
T ss_pred chHHHHHHHHhccC---HHHHHHHHHH-HHHHHhcCHHHHHHHHhccHHHHHHHHhcC--ccHHHHHHHHHHHHHHHcCh
Confidence 344555554321 1222345554 4455666666544333 222221111 23344433321
Q ss_pred HHHhhcCChhhHHHHHHHhhhh-hhhhhhhhhHHHHHH----HHhcC-CCHHHH---HHHHhhhccc-CCCCcchhhHHH
Q 003521 566 LGLLYLGKQESVEATAEVSKTF-NEKIRKYCDMTLLSC----AYAGT-GNVLKV---QNLLGHCAQH-HEKGEAYQGPAV 635 (813)
Q Consensus 566 lgLl~lG~~e~~~~~i~~L~~~-~~p~~r~~~~~~~gl----AyaGT-Gn~~~i---q~LL~~~~~~-~~d~~~vrr~Av 635 (813)
-|+-|+-+....+.+.+.+... .+| |.+.+++.|. +...+ ...... ..+++...+- .+.++..+..|+
T Consensus 234 ~g~~yL~~~gi~~~L~~~l~~~~~dp--~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~ 311 (503)
T PF10508_consen 234 HGLQYLEQQGIFDKLSNLLQDSEEDP--RLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAF 311 (503)
T ss_pred hHHHHHHhCCHHHHHHHHHhccccCC--cccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 1344444455666777776543 345 3344444333 11111 111111 2222222211 011125677778
Q ss_pred HHHHHhhccchhhHHHH-----------HHHHHHHhhcCChhHHhHHHHHHhhhc
Q 003521 636 LGIAMVAMAEELGLEMA-----------IRSLEHLLQYGEQNIRRAVPLALGLLC 679 (813)
Q Consensus 636 lglalI~~~~~~g~e~~-----------~~~l~~L~~~~~~~VR~g~~lALGL~~ 679 (813)
-++|.|+... .|.+.. .+.+......+...+|..+-=|++.+.
T Consensus 312 dtlg~igst~-~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il 365 (503)
T PF10508_consen 312 DTLGQIGSTV-EGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASIL 365 (503)
T ss_pred HHHHHHhCCH-HHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 8999998544 354433 222333344455667777777777763
No 143
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.90 E-value=1.6e+02 Score=36.97 Aligned_cols=86 Identities=20% Similarity=0.259 Sum_probs=56.1
Q ss_pred HHHHHhcCChhhhHHHhhccChHHHH---HHHHhhcccCCCCCcH-HHHHHHHHHHHccCCHHHHHHHHHhCC---C---
Q 003521 198 VDLLMEVEDLDLLVEHVDATNFKRTC---LYLTSAAKYLPGPDDM-LVLDIAYMIYLKFEEFPNALQIALFLD---N--- 267 (813)
Q Consensus 198 vdlalE~~~ld~i~~~vd~~~~~rv~---~Yl~~~~~~~~~p~~~-~vl~~~~~iy~~~~~~~~al~~al~l~---d--- 267 (813)
++|.+|.+|-+ +.+.+-.+.| .|...|- .+|... -.|+++.+.|.|+++|.+|-..|-++- -
T Consensus 1047 ~gL~~E~~Rr~-----l~~~~~~~~~ElAaYFt~~~---Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~ 1118 (1202)
T KOG0292|consen 1047 VGLSVELERRK-----LKKPNLEQQLELAAYFTHCK---LQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPP 1118 (1202)
T ss_pred hhheeeeeecc-----cCCchHHHHHHHHHHhhcCC---CCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCh
Confidence 56777777655 3445555553 4443332 344443 588999999999999999887776542 1
Q ss_pred -hHHHHHHHHhc-chHHHHHHHHHHH
Q 003521 268 -MQYVKQIFTSC-DDLLRKKQFCYIL 291 (813)
Q Consensus 268 -~~~i~~i~~~~-~d~~~~~Qlaf~l 291 (813)
.+.++++..++ .|+.-++||-|+-
T Consensus 1119 ~A~q~rki~~a~eknp~Da~~l~yd~ 1144 (1202)
T KOG0292|consen 1119 VAEQARKIKQAAEKNPTDAYELNYDP 1144 (1202)
T ss_pred HHHHHHHHHHHhhcCcccccccCccc
Confidence 14666777776 4777778887753
No 144
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=29.71 E-value=93 Score=23.16 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=24.4
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHH
Q 003521 48 LELYVERVQDPDPGLQKVALESMRTEI 74 (813)
Q Consensus 48 l~~~v~~l~e~d~~l~~~aL~~L~~~i 74 (813)
+..||..|+.+|+++++.|+-.|.++-
T Consensus 14 i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 14 IPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 678999999999999999999988764
No 145
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=29.59 E-value=7.6e+02 Score=26.81 Aligned_cols=166 Identities=12% Similarity=0.012 Sum_probs=81.2
Q ss_pred hhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCC--CH-HHHHHHHHhccCCCCchh
Q 003521 442 NHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGR-EDACIRIGAIMGLGISYAGTQ--ND-QIRHKLSTILNDAKSPLD 517 (813)
Q Consensus 442 ~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~-~~~~v~~gA~lGLGl~y~Gs~--~e-~i~e~L~~~L~d~~~~~e 517 (813)
+..+...+.|+.....|.. +.+.+.+...+.. ++.. ..... +++..+.|.. .. ...+.+.. .... ....
T Consensus 41 ~~~e~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~P~~~-~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~-~~~~ 113 (355)
T cd05804 41 TERERAHVEALSAWIAGDL---PKALALLEQLLDDYPRDL-LALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPE-NPDY 113 (355)
T ss_pred CHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHCCCcH-HHHHH-hHHHHHhcccccCchhHHHHHhc-cCcC-CCCc
Confidence 3444455667777666643 3477777666643 2222 11111 4444444422 22 22233322 2111 1112
Q ss_pred HHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCccccCchhHHHHHHHHHHhhcCChhhHHHHHHHhhhhh--hhhhhhh
Q 003521 518 VIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFN--EKIRKYC 595 (813)
Q Consensus 518 ~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~lG~~e~~~~~i~~L~~~~--~p~~r~~ 595 (813)
. .+...+|.++...|..+.....+....+..+. +.+. ...+|..+...|+-+++...++...... +|.....
T Consensus 114 ~--~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~---~~~~-~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~ 187 (355)
T cd05804 114 W--YLLGMLAFGLEEAGQYDRAEEAARRALELNPD---DAWA-VHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGH 187 (355)
T ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CcHH-HHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHH
Confidence 1 23334566666777655555555544333222 2221 2334445555577777777766554432 2333333
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHhhh
Q 003521 596 DMTLLSCAYAGTGNVLKVQNLLGHC 620 (813)
Q Consensus 596 ~~~~~glAyaGTGn~~~iq~LL~~~ 620 (813)
..+.++..|...|+......+++-+
T Consensus 188 ~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 188 NWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3456778889999987666665543
No 146
>TIGR02837 spore_II_R stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage II sporulation protein R.
Probab=29.45 E-value=67 Score=32.49 Aligned_cols=52 Identities=21% Similarity=0.234 Sum_probs=33.3
Q ss_pred cCCCHHHHHhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHhc
Q 003521 35 EDLSEEDLALKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYET 104 (813)
Q Consensus 35 ~~lseed~~lk~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye~ 104 (813)
..=|+|||+||-....- =|+.|...+..+.|. ...-+.++.|.+.|++.-++
T Consensus 47 NSDs~~DQ~lKl~VRD~--------------Vl~~~~~~~~~~~s~----~ea~~~i~~~l~~Ie~~a~~ 98 (168)
T TIGR02837 47 NSDSDEDQALKLKVRDA--------------VLKEIRPWLSGLKSL----EEARRVIRENLPEIERIAES 98 (168)
T ss_pred CCCCHHHHHHHHHHHHH--------------HHHHHHHHhccCCCH----HHHHHHHHHhhHHHHHHHHH
Confidence 35599999999887533 344555555554432 22366778888888777653
No 147
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=29.15 E-value=1.8e+02 Score=37.25 Aligned_cols=102 Identities=23% Similarity=0.247 Sum_probs=64.4
Q ss_pred HHhhhcccCCCC--cchhhHHHHHHHHhhccchhh-----HHHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCC-----
Q 003521 616 LLGHCAQHHEKG--EAYQGPAVLGIAMVAMAEELG-----LEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNP----- 683 (813)
Q Consensus 616 LL~~~~~~~~d~--~~vrr~AvlglalI~~~~~~g-----~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~----- 683 (813)
|+.+|-++.+++ +-.|..++|+||.+--.-+.. ..++..-+-.++.+.-|.||.++.+|||-. .|++
T Consensus 600 li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtf-l~~~~d~fd 678 (1387)
T KOG1517|consen 600 LIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTF-LSNGSDNFD 678 (1387)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHH-hcccccccc
Confidence 555666665552 357889999999985433321 145666666677777899999999999965 3332
Q ss_pred -chhH-------------HH--------HHHHhhcCCchHHHHHHHHHHHHHcCCCC
Q 003521 684 -KVNV-------------MD--------TLSRLSHDTDSEVAMAAVISLGLIGSGTN 718 (813)
Q Consensus 684 -~~~a-------------id--------~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~ 718 (813)
+..+ ++ .|-.+.+|..+.||.--.+++.=.+.|-.
T Consensus 679 e~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~ 735 (1387)
T KOG1517|consen 679 EQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYV 735 (1387)
T ss_pred hhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhH
Confidence 1111 22 12234577777787776677766666643
No 148
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=28.60 E-value=1.7e+02 Score=29.42 Aligned_cols=65 Identities=18% Similarity=0.223 Sum_probs=46.0
Q ss_pred chhhHHHHHHHHhhcc-chhhHHHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchhHHHHHHHhhc
Q 003521 629 AYQGPAVLGIAMVAMA-EELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSH 696 (813)
Q Consensus 629 ~vrr~AvlglalI~~~-~~~g~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~~~~aid~L~~l~~ 696 (813)
-+||++.+.+.-.... .. .+...+++..+.++.+..||.|++.+|.-.+.-.+ ..+++.+.+...
T Consensus 120 ~~rR~~~~~~~~~~~~~~~--~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~-~~v~~~l~~~~~ 185 (197)
T cd06561 120 WVRRAAIVLLLRLIKKETD--FDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDP-ERVIAFLEKNGL 185 (197)
T ss_pred HHHHHHHHHHHHHHHhccc--HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH-HHHHHHHHHHHH
Confidence 6777776666554443 22 27888899999998899999999999998876633 346666665443
No 149
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=28.50 E-value=1.1e+03 Score=28.35 Aligned_cols=179 Identities=13% Similarity=-0.038 Sum_probs=88.1
Q ss_pred cccchhHHhHhhhhcCC-ChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC-HHH
Q 003521 424 WDVDSGLAQIDKYFHST-DNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN-DQI 501 (813)
Q Consensus 424 ~~~~~~l~~l~~yL~s~-~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~-e~i 501 (813)
+..++++..+++-+... ...-.+-+...+|.++.... +-+.++..+...+...... ..+.+.+|.++...++ ++.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g-~~~eA~~~~~kal~l~P~~--~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG-KHLEALADLSKSIELDPRV--TQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHCCCHHHH
Confidence 34556666666665432 12334455666666664332 2344777777666532211 2345566666665554 345
Q ss_pred HHHHHHhcc-CCCCchhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCccccCchhHHHHHHHHHHhhcCChhhHHHH
Q 003521 502 RHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEAT 580 (813)
Q Consensus 502 ~e~L~~~L~-d~~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~lG~~e~~~~~ 580 (813)
.+.+...+. ++. ..+ +-+.+|.++.-.++-+.+...++..++..+. .......+|..+...|+-+.+...
T Consensus 385 ~~~~~~al~~~p~-~~~----~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~----~~~~~~~la~~~~~~g~~~eA~~~ 455 (615)
T TIGR00990 385 EEDFDKALKLNSE-DPD----IYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD----FIFSHIQLGVTQYKEGSIASSMAT 455 (615)
T ss_pred HHHHHHHHHhCCC-CHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc----CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 555555543 321 222 3456677777666655444444433332211 122233345555555666666666
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHhcCCCHHHHHHH
Q 003521 581 AEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNL 616 (813)
Q Consensus 581 i~~L~~~~~p~~r~~~~~~~glAyaGTGn~~~iq~L 616 (813)
++...... |.. ......+|.+|...|+.......
T Consensus 456 ~~~al~~~-P~~-~~~~~~lg~~~~~~g~~~~A~~~ 489 (615)
T TIGR00990 456 FRRCKKNF-PEA-PDVYNYYGELLLDQNKFDEAIEK 489 (615)
T ss_pred HHHHHHhC-CCC-hHHHHHHHHHHHHccCHHHHHHH
Confidence 66544321 111 11233456677777775544333
No 150
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=28.46 E-value=3.5e+02 Score=29.20 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=34.9
Q ss_pred HHHHHHHhhhcccCCCCcchhhHHHHHHHHhhccchhhHH-----HHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCch
Q 003521 611 LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLE-----MAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV 685 (813)
Q Consensus 611 ~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e-----~~~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~~~ 685 (813)
...++|+++.....+. .+++.+.+++|-.+.-.. .++ -...++..++.+.+|.+|.-+.-||.=++....|.
T Consensus 12 ~~l~~Ll~lL~~t~dp--~i~e~al~al~n~aaf~~-nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 12 QELQKLLCLLESTEDP--FIQEKALIALGNSAAFPF-NQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred HHHHHHHHHHhcCCCh--HHHHHHHHHHHhhccChh-HHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 3445555555433222 455555555555432211 111 12234445555566666655555555444444444
Q ss_pred hHHH
Q 003521 686 NVMD 689 (813)
Q Consensus 686 ~aid 689 (813)
..|+
T Consensus 89 ~~Ik 92 (254)
T PF04826_consen 89 EQIK 92 (254)
T ss_pred HHHH
Confidence 4443
No 151
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=28.46 E-value=59 Score=28.70 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=19.3
Q ss_pred CCCHHHHHhHHHHHHHHHHhCCCChhHH
Q 003521 36 DLSEEDLALKQQLELYVERVQDPDPGLQ 63 (813)
Q Consensus 36 ~lseed~~lk~~l~~~v~~l~e~d~~l~ 63 (813)
-|||+|++.=+|+| ..|.++||.+.
T Consensus 2 ~LSe~E~r~L~eiE---r~L~~~DP~fa 26 (82)
T PF11239_consen 2 PLSEHEQRRLEEIE---RQLRADDPRFA 26 (82)
T ss_pred CCCHHHHHHHHHHH---HHHHhcCcHHH
Confidence 48999987666666 67888998874
No 152
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=27.97 E-value=9.3e+02 Score=27.35 Aligned_cols=287 Identities=12% Similarity=0.017 Sum_probs=129.5
Q ss_pred HHHHHHHhhhhc--ccccchhHHhHhhhhcCCChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcC-CCHHHHHHHHH
Q 003521 411 KMSAAASLGMIL--LWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGR-EDACIRIGAIM 487 (813)
Q Consensus 411 k~sA~aslGlI~--~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~-~~~~v~~gA~l 487 (813)
|......-|++. .||.+.+...+.+-....+.+...-.+.|--....|. .+.+..+|...... ++..+.+..
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~---~~~A~~~l~~a~~~~p~~~l~~~~-- 157 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGD---EARANQHLEEAAELAGNDNILVEI-- 157 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCcCchHHHH--
Confidence 344445555544 4777788777776554433333333333322222232 33466667665442 222111111
Q ss_pred HHHHHhccCCC-HHHHHHHHHhccCCCCchhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCccccCchhHHHH--HH
Q 003521 488 GLGISYAGTQN-DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLI--PL 564 (813)
Q Consensus 488 GLGl~y~Gs~~-e~i~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~--~l 564 (813)
..+-++...++ ++..+.+...+.....+. .+...+|.+++..++-+.+..+++.+...... ..+....+ ..
T Consensus 158 ~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~----~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~--~~~~~~~l~~~a 231 (409)
T TIGR00540 158 ARTRILLAQNELHAARHGVDKLLEMAPRHK----EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF--DDEEFADLEQKA 231 (409)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC--CHHHHHHHHHHH
Confidence 11333333444 344455554443211112 24567788888888888777888777643111 11111111 11
Q ss_pred HHHHhhcCChh-hHHHHHHHhhhhhhhh-hhhhhHHHHHHHHhcCCCHHHHHHHHhhhcccCCCCcchhh--HHHHHHHH
Q 003521 565 GLGLLYLGKQE-SVEATAEVSKTFNEKI-RKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQG--PAVLGIAM 640 (813)
Q Consensus 565 glgLl~lG~~e-~~~~~i~~L~~~~~p~-~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr--~Avlglal 640 (813)
..+++--+..+ ..+.+.+.....+... ......++.+-++...|+.....+++.-......| +... ..+..++.
T Consensus 232 ~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd--~~~~~~~~l~~~~~ 309 (409)
T TIGR00540 232 EIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGD--DRAISLPLCLPIPR 309 (409)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC--cccchhHHHHHhhh
Confidence 23333222211 1223333333222111 12234455666777777765555544433332222 1111 13333333
Q ss_pred hhccchhhHHHHHHHHHHHhhc--CChhHHhHHHHHHhhhccCCCchh-HHHHHHH---hhcCCchHHHHHHHHHHHHHc
Q 003521 641 VAMAEELGLEMAIRSLEHLLQY--GEQNIRRAVPLALGLLCISNPKVN-VMDTLSR---LSHDTDSEVAMAAVISLGLIG 714 (813)
Q Consensus 641 I~~~~~~g~e~~~~~l~~L~~~--~~~~VR~g~~lALGL~~aGt~~~~-aid~L~~---l~~D~d~~Vr~~AiiAlGlV~ 714 (813)
+.-+++ +...+.++.-... .||. ...-.++|-++...++.. +.+.|++ +..+|++... ..+|.+.
T Consensus 310 l~~~~~---~~~~~~~e~~lk~~p~~~~--~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~----~~La~ll 380 (409)
T TIGR00540 310 LKPEDN---EKLEKLIEKQAKNVDDKPK--CCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL----AMAADAF 380 (409)
T ss_pred cCCCCh---HHHHHHHHHHHHhCCCChh--HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH----HHHHHHH
Confidence 332333 4555555544332 3342 234456677666666554 5556662 2345665432 2556666
Q ss_pred CCCCc
Q 003521 715 SGTNN 719 (813)
Q Consensus 715 aGt~n 719 (813)
...++
T Consensus 381 ~~~g~ 385 (409)
T TIGR00540 381 DQAGD 385 (409)
T ss_pred HHcCC
Confidence 55444
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=27.96 E-value=2.5e+02 Score=24.79 Aligned_cols=82 Identities=15% Similarity=0.155 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhcCChhH-HhHHHHHHhhhccCCCc-hhHHHHHHHhhc-CCchHHHHHHHHHHHHHcCCCCc-hHHHHH
Q 003521 650 EMAIRSLEHLLQYGEQNI-RRAVPLALGLLCISNPK-VNVMDTLSRLSH-DTDSEVAMAAVISLGLIGSGTNN-ARIAGM 725 (813)
Q Consensus 650 e~~~~~l~~L~~~~~~~V-R~g~~lALGL~~aGt~~-~~aid~L~~l~~-D~d~~Vr~~AiiAlGlV~aGt~n-~rv~~~ 725 (813)
+.+...+..+.+....+. ..-+.+-+|.++...++ ..+++.+..+.. +|+......+...+|.+..+.++ ......
T Consensus 19 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 98 (119)
T TIGR02795 19 ADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKAT 98 (119)
T ss_pred HHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHH
Confidence 556666666654321111 12234556666666666 447777776643 55533223445666666665554 333444
Q ss_pred HHHHhh
Q 003521 726 LRNLSS 731 (813)
Q Consensus 726 Lr~l~~ 731 (813)
++++..
T Consensus 99 ~~~~~~ 104 (119)
T TIGR02795 99 LQQVIK 104 (119)
T ss_pred HHHHHH
Confidence 444444
No 154
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=27.91 E-value=4.2e+02 Score=35.49 Aligned_cols=36 Identities=33% Similarity=0.361 Sum_probs=31.3
Q ss_pred CchhHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCC
Q 003521 683 PKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN 718 (813)
Q Consensus 683 ~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~ 718 (813)
-...++.+|..++++.+-.+|+.|+++||++.++.+
T Consensus 1222 ~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp 1257 (1692)
T KOG1020|consen 1222 LKEKVLILLMYFSKDKDGELRRKALINLGFICIQHP 1257 (1692)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCc
Confidence 345677889999999999999999999999998866
No 155
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=27.67 E-value=96 Score=27.05 Aligned_cols=52 Identities=13% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHhcCC--------CHHHHHHHHhhhcccCCCCcchhhHHHHHHHHhhccchhhHHHHHHH
Q 003521 601 SCAYAGTG--------NVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRS 655 (813)
Q Consensus 601 glAyaGTG--------n~~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e~~~~~ 655 (813)
+++++|+. +...|+.+.+++.+...- .+|..+..++|||+-..+ |.+...+.
T Consensus 10 aighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~--siRGT~fy~Lglis~T~~-G~~~L~~~ 69 (73)
T PF14668_consen 10 AIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVL--SIRGTCFYVLGLISSTEE-GAEILDEL 69 (73)
T ss_pred HHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCcc--chHHHHHHHHHHHhCCHH-HHHHHHHc
No 156
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=27.59 E-value=67 Score=31.54 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=27.8
Q ss_pred HHHHccCCHHHHHHHHHhCCChHHHHHHHHhc
Q 003521 247 MIYLKFEEFPNALQIALFLDNMQYVKQIFTSC 278 (813)
Q Consensus 247 ~iy~~~~~~~~al~~al~l~d~~~i~~i~~~~ 278 (813)
.-|.+.++|.+|+.+|++++.|-.+-++|+.+
T Consensus 5 ~N~l~~~~y~~Al~LAl~L~~P~~ll~i~~~~ 36 (141)
T PF08625_consen 5 SNLLRQKDYKEALRLALKLDHPFRLLKILKDL 36 (141)
T ss_pred HHHHHhhhHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 34567889999999999999999999999864
No 157
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=26.93 E-value=1.4e+03 Score=30.12 Aligned_cols=84 Identities=25% Similarity=0.250 Sum_probs=56.3
Q ss_pred cccCCCHHHHHhHH-HHHHHHHHhCCCChhHHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHhcCCCcchH
Q 003521 33 KDEDLSEEDLALKQ-QLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLK 111 (813)
Q Consensus 33 ~~~~lseed~~lk~-~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye~~~~~~~k 111 (813)
..+++.|.=+++.. =+|.+.+|+.|-.+-++.-+|+-...+.+.. + +|+.+...-....-.--+|.+. =.|
T Consensus 345 ~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~-----s--~p~~~~~eV~~la~grl~DkSs-lVR 416 (1251)
T KOG0414|consen 345 RDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQH-----S--IPLGSRTEVLELAIGRLEDKSS-LVR 416 (1251)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHcc-----C--CCccHHHHHHHHHhcccccccH-HHH
Confidence 34566777777777 6789999999999999999999998888876 2 2344444333333333333322 257
Q ss_pred HHHHHHHHHHHhh
Q 003521 112 KYMADILSVLALT 124 (813)
Q Consensus 112 ~~~AdilS~l~~t 124 (813)
+.+.-++|.+-++
T Consensus 417 k~Ai~Ll~~~L~~ 429 (1251)
T KOG0414|consen 417 KNAIQLLSSLLDR 429 (1251)
T ss_pred HHHHHHHHHHHhc
Confidence 7777777776543
No 158
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=26.62 E-value=7.1e+02 Score=26.36 Aligned_cols=133 Identities=13% Similarity=0.057 Sum_probs=70.5
Q ss_pred hcCCCCHHHHHHHHHHHhccCccccCchhHHHHHHHHHHhhcCChhhHHHHHHHhhhh-hh-hhhhhhhHHHHHHHHhcC
Q 003521 530 YVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTF-NE-KIRKYCDMTLLSCAYAGT 607 (813)
Q Consensus 530 ~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~lG~~e~~~~~i~~L~~~-~~-p~~r~~~~~~~glAyaGT 607 (813)
+...++-+.+..++..+...... .....-+...|.-..-.|+.+++...++..... ++ +-.+. .++-.++.+
T Consensus 120 ~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~----~l~~~li~~ 193 (280)
T PF13429_consen 120 YYRLGDYDEAEELLEKLEELPAA--PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARN----ALAWLLIDM 193 (280)
T ss_dssp HHHTT-HHHHHHHHHHHHH-T-----T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHH----HHHHHHCTT
T ss_pred HHHHhHHHHHHHHHHHHHhccCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH----HHHHHHHHC
Confidence 33445556666666655432111 112222333444455567777777777664443 22 33222 345567888
Q ss_pred CCHHHHHHHHhhhcccCCCCcchhhHHHHHHHHhhccchhhHHHHHHHHHHHhhc--CChhHHhHHHH
Q 003521 608 GNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQY--GEQNIRRAVPL 673 (813)
Q Consensus 608 Gn~~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e~~~~~l~~L~~~--~~~~VR~g~~l 673 (813)
|+....+.++........+ +-.-...+|.+....|++ +.+...+...... .||.+...-+-
T Consensus 194 ~~~~~~~~~l~~~~~~~~~--~~~~~~~la~~~~~lg~~---~~Al~~~~~~~~~~p~d~~~~~~~a~ 256 (280)
T PF13429_consen 194 GDYDEAREALKRLLKAAPD--DPDLWDALAAAYLQLGRY---EEALEYLEKALKLNPDDPLWLLAYAD 256 (280)
T ss_dssp CHHHHHHHHHHHHHHH-HT--SCCHCHHHHHHHHHHT-H---HHHHHHHHHHHHHSTT-HHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHCcC--HHHHHHHHHHHhcccccc---cccccccccccccccccccccccccc
Confidence 8877666666555443222 222335678888888888 8888888887653 35655554333
No 159
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.23 E-value=5.9e+02 Score=31.72 Aligned_cols=97 Identities=12% Similarity=0.097 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCChhhhHHHhhccChHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHcc
Q 003521 173 SIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKF 252 (813)
Q Consensus 173 ~~~~L~~lv~~iv~~~l~~n~e~eAvdlalE~~~ld~i~~~vd~~~~~rv~~Yl~~~~~~~~~p~~~~vl~~~~~iy~~~ 252 (813)
+.+.|..|..++-....++=.|..+-.-|.+.+|.+.=.+.++ .+|++..= +...+++
T Consensus 489 d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle------------------~E~~~~~q----V~lLL~m 546 (829)
T KOG2280|consen 489 DEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLE------------------LEPRSGEQ----VPLLLKM 546 (829)
T ss_pred chHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHh------------------cCCCccch----hHHHhcc
Confidence 3456666666665555556678888888888888886555554 23333211 1224578
Q ss_pred CCHHHHHHHHHhCCChHHHHHHHHhcchHHHHHHHHHHH
Q 003521 253 EEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYIL 291 (813)
Q Consensus 253 ~~~~~al~~al~l~d~~~i~~i~~~~~d~~~~~Qlaf~l 291 (813)
+++..|++.|++.+|+++|..++-.+.+...+-++--.|
T Consensus 547 ~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l 585 (829)
T KOG2280|consen 547 KDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTL 585 (829)
T ss_pred chHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998776666555553333
No 160
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=26.05 E-value=4.5e+02 Score=25.06 Aligned_cols=15 Identities=20% Similarity=0.073 Sum_probs=6.5
Q ss_pred CCCHHHHHHHHHHHh
Q 003521 533 SCNEEVAQAIIFALM 547 (813)
Q Consensus 533 s~~~e~~e~ll~~L~ 547 (813)
.++...++..++.|.
T Consensus 24 ~~~~~~~~~~~~~l~ 38 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLA 38 (145)
T ss_pred CCCHHHHHHHHHHHH
Confidence 344444444444443
No 161
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=26.01 E-value=8.8e+02 Score=26.38 Aligned_cols=142 Identities=15% Similarity=0.138 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhhhcc-ccccCCC--ccchhhhhHHHHHHHHhcCCCcchHHHHHHHHHHH
Q 003521 45 KQQLELYVERVQDPDPGLQKVALESMRTEIRTSTS-SMTSVPK--PLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVL 121 (813)
Q Consensus 45 k~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~ts-s~tsvpk--plk~l~~~~~~l~~~ye~~~~~~~k~~~AdilS~l 121 (813)
++.+..+..-++.+++.++..||+.+.+++..+-. ..++-+. +-..-.+-...+....++. .++.+..++.-+++|
T Consensus 63 ~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KL 141 (298)
T PF12719_consen 63 KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKL 141 (298)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 56677888888888999999999999999998732 2222221 0112223333444444544 555788888889999
Q ss_pred HhhccccccccchhhhhcCCCCCCCCcccHHHHHHHHHHHHHHHHhccCccCHHHHHHHHHHHHHHHhc
Q 003521 122 ALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLMELVQEIVAFHMK 190 (813)
Q Consensus 122 ~~t~~~~~~~~~L~y~L~~~~~d~~~wgheYvr~l~~~i~~~y~~~~~~~~~~~~L~~lv~~iv~~~l~ 190 (813)
...-...+. ..+--+|.=-.|++..-..+++|+..+-+...|.....+. -..+.+.+-..+....+
T Consensus 142 lL~~~i~~~-~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~--Q~~l~~~f~~~l~~~~~ 207 (298)
T PF12719_consen 142 LLSGRISDP-PKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPEN--QERLAEAFLPTLRTLSN 207 (298)
T ss_pred HhcCCCCcH-HHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHHHHHHh
Confidence 742222211 3444466656788887777899999999999997533211 13444444444444443
No 162
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=25.98 E-value=4.6e+02 Score=30.25 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=21.7
Q ss_pred HHHHHHHHhccCccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Q 003521 159 EIAQEYAKRQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLME 203 (813)
Q Consensus 159 ~i~~~y~~~~~~~~~~~~L~~lv~~iv~~~l~~n~e~eAvdlalE 203 (813)
++++.+.+.++.++++. . -+...++..|+|.+||.++=+
T Consensus 187 ~ai~lle~L~~~~pev~---~---~LA~v~l~~~~E~~AI~ll~~ 225 (395)
T PF09295_consen 187 EAIELLEKLRERDPEVA---V---LLARVYLLMNEEVEAIRLLNE 225 (395)
T ss_pred HHHHHHHHHHhcCCcHH---H---HHHHHHHhcCcHHHHHHHHHH
Confidence 34455555555544321 1 244445567899999887643
No 163
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=25.81 E-value=7.2e+02 Score=25.32 Aligned_cols=27 Identities=19% Similarity=0.146 Sum_probs=14.9
Q ss_pred HHHHHhhHhcCCCCHHHHHHHHHHHhc
Q 003521 522 SAISLGLIYVGSCNEEVAQAIIFALMD 548 (813)
Q Consensus 522 AaLaLGLi~lGs~~~e~~e~ll~~L~~ 548 (813)
+-+.+|.++...++.+.+...++.+.+
T Consensus 72 a~~~la~~~~~~~~~~~A~~~~~~~l~ 98 (235)
T TIGR03302 72 AQLDLAYAYYKSGDYAEAIAAADRFIR 98 (235)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445666666666665555555554443
No 164
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=25.80 E-value=88 Score=30.68 Aligned_cols=45 Identities=22% Similarity=0.300 Sum_probs=36.6
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHhcCCC
Q 003521 50 LYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPD 107 (813)
Q Consensus 50 ~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye~~~~ 107 (813)
.+...|..+|+++++.||+-|.+ |- -+.|.||-+.|+.+-++.+|
T Consensus 21 ~~~~LL~~~d~~vQklAL~cll~-----~k--------~~~l~pY~d~L~~Lldd~~f 65 (141)
T PF07539_consen 21 ALLRLLSSRDPEVQKLALDCLLT-----WK--------DPYLTPYKDNLENLLDDKTF 65 (141)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHH-----hC--------cHHHHhHHHHHHHHcCcchH
Confidence 45678899999999999999876 21 13689999999999988755
No 165
>PHA03033 hypothetical protein; Provisional
Probab=25.25 E-value=34 Score=32.77 Aligned_cols=52 Identities=25% Similarity=0.370 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhhh--ccccccC---------CCccchhhhhHHHHHHHH
Q 003521 45 KQQLELYVERVQDPDPGLQKVALESMRTEIRTS--TSSMTSV---------PKPLKFLRPHYGTLKAYY 102 (813)
Q Consensus 45 k~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~--tss~tsv---------pkplk~l~~~~~~l~~~y 102 (813)
|+=+|..|.-+ . ...||..++.++.+- +.+||+. .|.+|++|+|++..+.+|
T Consensus 77 Kdyie~~v~~~-----n-i~r~l~n~~~~~~~~~i~~~m~~~~~i~~~y~~~~~~~y~~~~~~~~~nly 139 (142)
T PHA03033 77 ADYIEDIVDDI-----N-ILRALDNFKEIIEKDKIADIMSHMKFIEDNYETDKLLKYIRDHIPEEKNLY 139 (142)
T ss_pred HHHHHHHHHHH-----H-HHHHHHHHHHHHHhhhHHHHHHHHHhhccccccchHHHHHHHhCcccccee
Confidence 44455555543 1 256888888887654 5577762 244555555555555444
No 166
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=24.98 E-value=1.3e+03 Score=28.00 Aligned_cols=277 Identities=15% Similarity=0.099 Sum_probs=128.6
Q ss_pred HHhHhhhhcCCChhhHHHHHHHHHHhhcCCCCCh---hhHHHHHHHhhcCCCHHHHH-HHHHHHHHHh--ccCCCH-HHH
Q 003521 430 LAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDC---DPALALLSEYVGREDACIRI-GAIMGLGISY--AGTQND-QIR 502 (813)
Q Consensus 430 l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~---d~~~~lL~~~L~~~~~~v~~-gA~lGLGl~y--~Gs~~e-~i~ 502 (813)
+..+.+.+.+..---+.||..++.-.-.|..-+. ...+..|...+.+..+..+. ++.++.-... .|...| .+.
T Consensus 136 l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv 215 (569)
T KOG1242|consen 136 LELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIV 215 (569)
T ss_pred HHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHH
Confidence 4445555666555666677766655555543221 24666677777665443332 4555443332 343333 333
Q ss_pred HHHHHhcc---CCCCchhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCccccCchhH--HHHHHHHHHhhcCChhhH
Q 003521 503 HKLSTILN---DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLT--RLIPLGLGLLYLGKQESV 577 (813)
Q Consensus 503 e~L~~~L~---d~~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~--r~~~lglgLl~lG~~e~~ 577 (813)
..+-.++. |. ..++..+|.-+.=.++ -.-+...+..++..+...-. ..+|. .+..-.+|.+......+.
T Consensus 216 ~~lp~il~~~~d~--~~~Vr~Aa~~a~kai~-~~~~~~aVK~llpsll~~l~---~~kWrtK~aslellg~m~~~ap~qL 289 (569)
T KOG1242|consen 216 PILPSILTNFGDK--INKVREAAVEAAKAIM-RCLSAYAVKLLLPSLLGSLL---EAKWRTKMASLELLGAMADCAPKQL 289 (569)
T ss_pred hhHHHHHHHhhcc--chhhhHHHHHHHHHHH-HhcCcchhhHhhhhhHHHHH---HHhhhhHHHHHHHHHHHHHhchHHH
Confidence 43333332 33 2233223333322221 11222334444443332210 11232 333345565555555543
Q ss_pred H--------HHHHHhhhhhhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhcccCCCCcchhhHHHHHHH---Hhhccch
Q 003521 578 E--------ATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIA---MVAMAEE 646 (813)
Q Consensus 578 ~--------~~i~~L~~~~~p~~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~Avlgla---lI~~~~~ 646 (813)
+ .+.+.|. +.+|-.|.++.-++ ..|+-.=++.-|+.+.....+...|.+.--..++-+++ ||..=++
T Consensus 290 s~~lp~iiP~lsevl~-DT~~evr~a~~~~l-~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~ 367 (569)
T KOG1242|consen 290 SLCLPDLIPVLSEVLW-DTKPEVRKAGIETL-LKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDA 367 (569)
T ss_pred HHHHhHhhHHHHHHHc-cCCHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecc
Confidence 3 3444443 34566665543322 23333334444555443333322221001122333333 2222221
Q ss_pred hh-HHHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchhHH--------HHHHHhhcCCchHHHHHHHHHHHHHcC
Q 003521 647 LG-LEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVM--------DTLSRLSHDTDSEVAMAAVISLGLIGS 715 (813)
Q Consensus 647 ~g-~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~~~~ai--------d~L~~l~~D~d~~Vr~~AiiAlGlV~a 715 (813)
.. .-|++-+-+.| +..+..+++..+-..|-.|.=..++..+ ..|..-..|++++||--|.-|+|...=
T Consensus 368 psLalmvpiL~R~l-~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 368 PSLALMVPILKRGL-AERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLE 444 (569)
T ss_pred hhHHHHHHHHHHHH-hhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 11 11222222223 3346778899999999998877655443 334455689999999998888876653
No 167
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=24.50 E-value=1.7e+03 Score=29.24 Aligned_cols=288 Identities=13% Similarity=0.083 Sum_probs=153.2
Q ss_pred HHhhhhc--ccccchhHHhHhhhhcCCChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcCCC-------HHHHHHHH
Q 003521 416 ASLGMIL--LWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRED-------ACIRIGAI 486 (813)
Q Consensus 416 aslGlI~--~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~~-------~~v~~gA~ 486 (813)
..+|.++ .|+.++|...+.+-+...... ..++.+++.++... ..+.+..++........ ...+..+.
T Consensus 389 ~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~--~~a~~~L~~l~~~~--~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~ 464 (1157)
T PRK11447 389 LGLGDVAMARKDYAAAERYYQQALRMDPGN--TNAVRGLANLYRQQ--SPEKALAFIASLSASQRRSIDDIERSLQNDRL 464 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhc--CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHH
Confidence 3445444 578888888887766432222 24566777766432 22446666654322210 11222344
Q ss_pred HHHHHHhccCCC-HHHHHHHHHhcc-CCCCchhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCccccCchhHHHHHH
Q 003521 487 MGLGISYAGTQN-DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPL 564 (813)
Q Consensus 487 lGLGl~y~Gs~~-e~i~e~L~~~L~-d~~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~l 564 (813)
..+|-++...++ ++..+.+...+. ++. +. .+.+.+|.++.-.++.+.+...+..+....+. ++-.+ .+.
T Consensus 465 ~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~----~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~---~~~~~-~a~ 535 (1157)
T PRK11447 465 AQQAEALENQGKWAQAAELQRQRLALDPG-SV----WLTYRLAQDLRQAGQRSQADALMRRLAQQKPN---DPEQV-YAY 535 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHH-HHH
Confidence 556666666555 466677766664 332 22 25678888888888888777777665543322 22222 223
Q ss_pred HHHHhhcCChhhHHHHHHHhhhhh--hhhh------hhhhHHHHHHHHhcCCCHHHHHHHHhhhcccCCCCcchhhHHHH
Q 003521 565 GLGLLYLGKQESVEATAEVSKTFN--EKIR------KYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVL 636 (813)
Q Consensus 565 glgLl~lG~~e~~~~~i~~L~~~~--~p~~------r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~Avl 636 (813)
++-+...|+.+++...++.+.... +.+. .....+..+-++...|+......++.. +.. +.+....+
T Consensus 536 al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~---~p~---~~~~~~~L 609 (1157)
T PRK11447 536 GLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ---QPP---STRIDLTL 609 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh---CCC---CchHHHHH
Confidence 444444566666666665543210 1111 112234556678889988777777762 212 33444455
Q ss_pred HHHHhhccchhhHHHHHHHHHHHhhcC--ChhHHhHHHHHHhhhccCCC-chhHHHHHHHhhc-CCchHHHHHHHHHHHH
Q 003521 637 GIAMVAMAEELGLEMAIRSLEHLLQYG--EQNIRRAVPLALGLLCISNP-KVNVMDTLSRLSH-DTDSEVAMAAVISLGL 712 (813)
Q Consensus 637 glalI~~~~~~g~e~~~~~l~~L~~~~--~~~VR~g~~lALGL~~aGt~-~~~aid~L~~l~~-D~d~~Vr~~AiiAlGl 712 (813)
|-.+...|+. +.+...+....... ++..+.+ +|.++...+ ..++++.+.++.. +|++.. +...+|.
T Consensus 610 a~~~~~~g~~---~~A~~~y~~al~~~P~~~~a~~~----la~~~~~~g~~~eA~~~l~~ll~~~p~~~~---~~~~la~ 679 (1157)
T PRK11447 610 ADWAQQRGDY---AAARAAYQRVLTREPGNADARLG----LIEVDIAQGDLAAARAQLAKLPATANDSLN---TQRRVAL 679 (1157)
T ss_pred HHHHHHcCCH---HHHHHHHHHHHHhCCCCHHHHHH----HHHHHHHCCCHHHHHHHHHHHhccCCCChH---HHHHHHH
Confidence 5556666666 88888888776543 3444443 333332223 4466777776653 333321 2344555
Q ss_pred HcCCCCc-hHHHHHHHHHhhh
Q 003521 713 IGSGTNN-ARIAGMLRNLSSY 732 (813)
Q Consensus 713 V~aGt~n-~rv~~~Lr~l~~~ 732 (813)
+....++ .+..+.++++.+.
T Consensus 680 ~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 680 AWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHhhh
Confidence 5555444 2344455554443
No 168
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.17 E-value=1.5e+03 Score=28.39 Aligned_cols=92 Identities=24% Similarity=0.253 Sum_probs=57.9
Q ss_pred HHHHhhc--cchhhHHHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchhHHHH----HH-HhhcCCchHHHHHHHHH
Q 003521 637 GIAMVAM--AEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDT----LS-RLSHDTDSEVAMAAVIS 709 (813)
Q Consensus 637 glalI~~--~~~~g~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~aGt~~~~aid~----L~-~l~~D~d~~Vr~~AiiA 709 (813)
+|.|+.- .+|.-...+...+..+..+.++++||-+-=.|..++.++...+++.. .- .+-.++|-.|||-|+==
T Consensus 313 aI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDL 392 (938)
T KOG1077|consen 313 AISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDL 392 (938)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 5555544 34422234556667778889999999998888888888888887742 22 33348888899876533
Q ss_pred HHHHcCCCCchH--HHHHHHHH
Q 003521 710 LGLIGSGTNNAR--IAGMLRNL 729 (813)
Q Consensus 710 lGlV~aGt~n~r--v~~~Lr~l 729 (813)
|= -|+--.|++ |..+|+-|
T Consensus 393 LY-~mcD~~Nak~IV~elLqYL 413 (938)
T KOG1077|consen 393 LY-AMCDVSNAKQIVAELLQYL 413 (938)
T ss_pred HH-HHhchhhHHHHHHHHHHHH
Confidence 21 122334544 45555544
No 169
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=24.05 E-value=1.1e+02 Score=22.83 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=17.2
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHH
Q 003521 687 VMDTLSRLSHDTDSEVAMAAVISLGL 712 (813)
Q Consensus 687 aid~L~~l~~D~d~~Vr~~AiiAlGl 712 (813)
++..|-++.++++..|+..|+-|++=
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~n 38 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGN 38 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 55566666667777777777666653
No 170
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.40 E-value=4.2e+02 Score=33.07 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhCCChHHHH
Q 003521 240 LVLDIAYMIYLKFEEFPNALQIALFLDNMQYVK 272 (813)
Q Consensus 240 ~vl~~~~~iy~~~~~~~~al~~al~l~d~~~i~ 272 (813)
.+.+++...|...++|..|+++.+.+.+.+...
T Consensus 506 ~L~e~La~LYl~d~~Y~~Al~~ylklk~~~vf~ 538 (846)
T KOG2066|consen 506 ALLEVLAHLYLYDNKYEKALPIYLKLQDKDVFD 538 (846)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHhccChHHHH
Confidence 689999999999999999999999999988544
No 171
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=23.28 E-value=1.8e+03 Score=28.97 Aligned_cols=231 Identities=16% Similarity=0.164 Sum_probs=113.5
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCH---HHHHHHHHhccCCCCchhHHHHHHHHHhhHhc-----CCCCHH
Q 003521 466 ALALLSEYVGREDACIRIGAIMGLGISYAGTQND---QIRHKLSTILNDAKSPLDVIAFSAISLGLIYV-----GSCNEE 537 (813)
Q Consensus 466 ~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~e---~i~e~L~~~L~d~~~~~e~~~~AaLaLGLi~l-----Gs~~~e 537 (813)
+++.|.+.+++.+..+|+.|+=|+|-+..-...+ ++++....++..-+.... -++|+|+|+.+.. ++--++
T Consensus 342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~a-WHgacLaLAELA~rGlLlps~l~d 420 (1133)
T KOG1943|consen 342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSA-WHGACLALAELALRGLLLPSLLED 420 (1133)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhH-HHHHHHHHHHHHhcCCcchHHHHH
Confidence 6777888888999999999999999986554432 334444443331111223 3589999886532 222234
Q ss_pred HHHHHHHHHhcc--C-ccccCchhH---HHHHHHHHHhhcCChhhHHHHHH----Hhh--hhhh--hhhhhhhHHHHHHH
Q 003521 538 VAQAIIFALMDR--S-ESELGEPLT---RLIPLGLGLLYLGKQESVEATAE----VSK--TFNE--KIRKYCDMTLLSCA 603 (813)
Q Consensus 538 ~~e~ll~~L~~~--~-~~~l~e~~~---r~~~lglgLl~lG~~e~~~~~i~----~L~--~~~~--p~~r~~~~~~~glA 603 (813)
++-.++..|... . .-...+.+. -+++++++=.| +....++++. .|. ..-| =..|+++..
T Consensus 421 VvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ray--s~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA----- 493 (1133)
T KOG1943|consen 421 VVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAY--SPSDLKPVLQSLASALLIVALFDREVNCRRAASA----- 493 (1133)
T ss_pred HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcC--ChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH-----
Confidence 554555444321 0 000011121 22333433222 2333333333 221 1122 233555443
Q ss_pred HhcCCCHHHHHHHHhhhccc---------CCCC-cchhhHHHHHHHHhhccchhhHHHHHHHHHHHhhc----CChhHHh
Q 003521 604 YAGTGNVLKVQNLLGHCAQH---------HEKG-EAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQY----GEQNIRR 669 (813)
Q Consensus 604 yaGTGn~~~iq~LL~~~~~~---------~~d~-~~vrr~AvlglalI~~~~~~g~e~~~~~l~~L~~~----~~~~VR~ 669 (813)
+.|+++---.+- ++.- -..|...-..+......-| .-..++|+||... .|+.+|.
T Consensus 494 --------AlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~---~y~~~~f~~L~t~Kv~HWd~~ire 562 (1133)
T KOG1943|consen 494 --------ALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFS---GYREPVFNHLLTKKVCHWDVKIRE 562 (1133)
T ss_pred --------HHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhh---hHHHHHHHHHHhcccccccHHHHH
Confidence 233332210000 0000 0112222333333222222 3345666666533 5788888
Q ss_pred HHHHHHhhhccCCCchhHHHHHHHhhc---CCchHHHHHHHHHHHHHcC
Q 003521 670 AVPLALGLLCISNPKVNVMDTLSRLSH---DTDSEVAMAAVISLGLIGS 715 (813)
Q Consensus 670 g~~lALGL~~aGt~~~~aid~L~~l~~---D~d~~Vr~~AiiAlGlV~a 715 (813)
-++.||--++--+|..-+-..|-++.. -++...|.+..+|.|-|..
T Consensus 563 laa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 563 LAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred HHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 888888877666666555445555533 2456678888888887643
No 172
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=22.87 E-value=7.9e+02 Score=29.99 Aligned_cols=114 Identities=17% Similarity=0.156 Sum_probs=59.3
Q ss_pred hhhhhhhhHHHHHHHHhcCCCHH---HHHHHH-hhhcccCCCCcchhhHHHHHHHHhhccchhhH---HHHHHHHHHHh-
Q 003521 589 EKIRKYCDMTLLSCAYAGTGNVL---KVQNLL-GHCAQHHEKGEAYQGPAVLGIAMVAMAEELGL---EMAIRSLEHLL- 660 (813)
Q Consensus 589 ~p~~r~~~~~~~glAyaGTGn~~---~iq~LL-~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~---e~~~~~l~~L~- 660 (813)
+.+.+.-..+ .+|--+.+++ .|+..+ |...-..+.+..||.-..--||+|+ +-+|- .-..-++..|+
T Consensus 65 dRil~fl~~f---~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~--d~v~eIDe~l~N~L~ekl~~ 139 (885)
T COG5218 65 DRILSFLKRF---FEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLS--DVVREIDEVLANGLLEKLSE 139 (885)
T ss_pred HHHHHHHHHH---HHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHH--HhcchHHHHHHHHHHHHHHH
Confidence 4555554444 4577777654 444444 4443322222245544444555553 22211 11222222332
Q ss_pred --hcCChhHHhHHHHHHhhhc--cCCCchhHHHHHHHh-hcCCchHHHHHHH
Q 003521 661 --QYGEQNIRRAVPLALGLLC--ISNPKVNVMDTLSRL-SHDTDSEVAMAAV 707 (813)
Q Consensus 661 --~~~~~~VR~g~~lALGL~~--aGt~~~~aid~L~~l-~~D~d~~Vr~~Ai 707 (813)
-+.+|.||+-+-.+|--.- -+++...+..+|... -+||.+.||+.|+
T Consensus 140 R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n~l~~~vqnDPS~EVRr~al 191 (885)
T COG5218 140 RLFDREKAVRREAVKVLCYYQEMELNEENRIVNLLKDIVQNDPSDEVRRLAL 191 (885)
T ss_pred HHhcchHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 2457888888777765433 455666667766544 5888888987543
No 173
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=22.71 E-value=1.1e+03 Score=26.14 Aligned_cols=176 Identities=16% Similarity=0.157 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHhcCCCcchHHHHHHHHHHHHhhccccccccchhhhhcCCCC
Q 003521 64 KVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEG 143 (813)
Q Consensus 64 ~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye~~~~~~~k~~~AdilS~l~~t~~~~~~~~~L~y~L~~~~~ 143 (813)
...++.+++.|+.-|+-++. +|++...+-..+=+..+.+-++.+..++++-- .|+
T Consensus 35 ~~~~~~~~~~IK~~t~~fS~-------lr~~~~~~la~~l~~~~~~p~~~~~~~~~~y~----------~L~-------- 89 (297)
T PF13170_consen 35 AERFKEISKYIKKNTGWFSP-------LRGNHRFILAALLDISFEDPEEAFKEVLDIYE----------KLK-------- 89 (297)
T ss_pred HHHHHHHHHHHHHccccccc-------ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHH----------HHH--------
Confidence 56788888999987653332 56665444443333333323667777776632 122
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHhccCccC---HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCChhhhHHHhh-----
Q 003521 144 DIGSWGHEYVRNLAGEIAQEYAKRQTDEAS---IDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVD----- 215 (813)
Q Consensus 144 d~~~wgheYvr~l~~~i~~~y~~~~~~~~~---~~~L~~lv~~iv~~~l~~n~e~eAvdlalE~~~ld~i~~~vd----- 215 (813)
+-+-|.++|.--.+.-|... ....+.++- ...+-....+-.||.....+++-|+=+|.-.+..+.+-+.++
T Consensus 90 ~~gFk~~~y~~laA~~i~~~-~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~l~~~~E~~Y~~ 168 (297)
T PF13170_consen 90 EAGFKRSEYLYLAALIILEE-EEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEELAERMEQCYQK 168 (297)
T ss_pred HhccCccChHHHHHHHHHHh-cccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHHHHHHHHHHHHH
Confidence 23456667765444444443 211111111 245666677778888888999999999998777766654432
Q ss_pred -------ccChHHHHHHHHhhcccCCCCCcHHHHHHHHHHH---HccC-----CHHHHHHHHHhCCChH
Q 003521 216 -------ATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIY---LKFE-----EFPNALQIALFLDNMQ 269 (813)
Q Consensus 216 -------~~~~~rv~~Yl~~~~~~~~~p~~~~vl~~~~~iy---~~~~-----~~~~al~~al~l~d~~ 269 (813)
.+|.-+.+.++++......++. .+-+.+++ .+.+ .|...++++-.+++++
T Consensus 169 L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~----v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~ 233 (297)
T PF13170_consen 169 LADAGFKKGNDLQFLSHILALSEGDDQEK----VARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPE 233 (297)
T ss_pred HHHhCCCCCcHHHHHHHHHHhccccchHH----HHHHHHHHHHHHHcCCccccccccHHHHHHhcCCch
Confidence 2555666677766654332222 22233332 3322 3566666666565555
No 174
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=22.15 E-value=1.5e+03 Score=27.70 Aligned_cols=223 Identities=12% Similarity=-0.016 Sum_probs=97.6
Q ss_pred hhcccccchhHHhHhhhhcCC-ChhhHHHHHHHHHHhhcCCCCChhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCC
Q 003521 420 MILLWDVDSGLAQIDKYFHST-DNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN 498 (813)
Q Consensus 420 lI~~~~~~~~l~~l~~yL~s~-~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGl~y~Gs~~ 498 (813)
+...|..++|......-+... .+.+.....+.-+...+|..+ .+..++..... ++. +..-++ .-|++-.|-.
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~---~A~~vf~~m~~-~d~-~t~n~l-I~~y~~~G~~- 407 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME---DARNVFDRMPR-KNL-ISWNAL-IAGYGNHGRG- 407 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHH---HHHHHHHhCCC-CCe-eeHHHH-HHHHHHcCCH-
Confidence 344556666666554433321 122222233333444455433 36665554432 222 222222 2244334432
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHHhhHhcCCCCHHHHHHHHHHHhccCccccCchhHHHHHHHHHHhhcCChhhHH
Q 003521 499 DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVE 578 (813)
Q Consensus 499 e~i~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~lG~~e~~~ 578 (813)
++..+.+...... ........+.++--++. -+|..+....+++.+.+....+ -....+.++.-++.-.|+-++|.
T Consensus 408 ~~A~~lf~~M~~~-g~~Pd~~T~~~ll~a~~--~~g~~~~a~~~f~~m~~~~g~~--p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 408 TKAVEMFERMIAE-GVAPNHVTFLAVLSACR--YSGLSEQGWEIFQSMSENHRIK--PRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HHHHHHHHHHHHh-CCCCCHHHHHHHHHHHh--cCCcHHHHHHHHHHHHHhcCCC--CCccchHhHHHHHHhcCCHHHHH
Confidence 3444444443321 11111111233333333 2344455566666654322221 11223445555666677777777
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhcccCCCCcchhhHHHHHHHHhhccchhhHHHHHHHHHH
Q 003521 579 ATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEH 658 (813)
Q Consensus 579 ~~i~~L~~~~~p~~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e~~~~~l~~ 658 (813)
.+++.+...++... + ..+.- +|+--||.+..+........-..+ ++.....++-++...|+. +.+.++++.
T Consensus 483 ~~~~~~~~~p~~~~-~-~~Ll~--a~~~~g~~~~a~~~~~~l~~~~p~--~~~~y~~L~~~y~~~G~~---~~A~~v~~~ 553 (697)
T PLN03081 483 AMIRRAPFKPTVNM-W-AALLT--ACRIHKNLELGRLAAEKLYGMGPE--KLNNYVVLLNLYNSSGRQ---AEAAKVVET 553 (697)
T ss_pred HHHHHCCCCCCHHH-H-HHHHH--HHHHcCCcHHHHHHHHHHhCCCCC--CCcchHHHHHHHHhCCCH---HHHHHHHHH
Confidence 77765533222221 2 22333 344556655444333222111111 333445555566666665 777777777
Q ss_pred HhhcC
Q 003521 659 LLQYG 663 (813)
Q Consensus 659 L~~~~ 663 (813)
+-+.+
T Consensus 554 m~~~g 558 (697)
T PLN03081 554 LKRKG 558 (697)
T ss_pred HHHcC
Confidence 66543
No 175
>PF13934 ELYS: Nuclear pore complex assembly
Probab=22.14 E-value=3.2e+02 Score=28.84 Aligned_cols=89 Identities=18% Similarity=0.263 Sum_probs=57.1
Q ss_pred HHHhcCCCHHHHHHHHHhcCC----hhhhHHH-hhccChHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHccCCHHHHHH
Q 003521 186 AFHMKHNAEPEAVDLLMEVED----LDLLVEH-VDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPNALQ 260 (813)
Q Consensus 186 ~~~l~~n~e~eAvdlalE~~~----ld~i~~~-vd~~~~~rv~~Yl~~~~~~~~~p~~~~vl~~~~~iy~~~~~~~~al~ 260 (813)
..++.|+++.+||+++.+..- -++|.+. +....+.-...|+....+-+.+++ .+.....+ +..+..++|+.
T Consensus 86 ~W~LD~~~~~~A~~~L~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~---~~~~~~~~-La~~~v~EAf~ 161 (226)
T PF13934_consen 86 FWLLDHGDFEEALELLSHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPE---ALTLYFVA-LANGLVTEAFS 161 (226)
T ss_pred HHHhChHhHHHHHHHhCCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHH---HHHHHHHH-HHcCCHHHHHH
Confidence 467899999999999998743 2334333 344667778888887766555543 33333333 45678888888
Q ss_pred HHHhCCChH---HHHHHHHhc
Q 003521 261 IALFLDNMQ---YVKQIFTSC 278 (813)
Q Consensus 261 ~al~l~d~~---~i~~i~~~~ 278 (813)
+.=...+.. ..++.++.|
T Consensus 162 ~~R~~~~~~~~~l~e~l~~~~ 182 (226)
T PF13934_consen 162 FQRSYPDELRRRLFEQLLEHC 182 (226)
T ss_pred HHHhCchhhhHHHHHHHHHHH
Confidence 775555543 455555544
No 176
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=21.96 E-value=5.8e+02 Score=28.69 Aligned_cols=153 Identities=22% Similarity=0.208 Sum_probs=72.1
Q ss_pred hhhHHHHHHHHhhccchhhHHHHHHHHHHHh------------hcCChhHH-hHHHHHHhhhccCCCch--h-HHHHHHH
Q 003521 630 YQGPAVLGIAMVAMAEELGLEMAIRSLEHLL------------QYGEQNIR-RAVPLALGLLCISNPKV--N-VMDTLSR 693 (813)
Q Consensus 630 vrr~AvlglalI~~~~~~g~e~~~~~l~~L~------------~~~~~~VR-~g~~lALGL~~aGt~~~--~-aid~L~~ 693 (813)
.=+.|..-+||=+.-++.+.-.-.+++.+|- |.++|.-- |.-.+++=-+|..++.. . |.+++..
T Consensus 94 ~GqLALyiLAL~asC~dp~~~~~~~Lvs~Lk~~le~e~~~i~~h~g~P~TnyYq~sL~vLALCv~~~~~~~~~v~kL~~~ 173 (326)
T PF01122_consen 94 SGQLALYILALRASCRDPRFFKGHNLVSQLKRKLEEEKENIGNHKGHPLTNYYQYSLGVLALCVHNKRVSLSVVAKLLKA 173 (326)
T ss_dssp HHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHHHHHHHTSSSTS-SSGHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhhhccCCcccccccHHHHHHHHHHhhhhhcccCCCCCCCcccchHHHHHHHHccCCCcCHHHHHHHHHH
Confidence 3466777788854444433223334444442 22233332 33333332345444432 3 3345555
Q ss_pred hhcC----CchHHHHHHHHHHHHHcCCCC--c-----hHHHHHHHHHhhhh--ccChhh----HHHHHHH-HhhhhcCCC
Q 003521 694 LSHD----TDSEVAMAAVISLGLIGSGTN--N-----ARIAGMLRNLSSYY--YKDANL----LFCVRIA-QGLVHMGKG 755 (813)
Q Consensus 694 l~~D----~d~~Vr~~AiiAlGlV~aGt~--n-----~rv~~~Lr~l~~~~--~~d~~~----~f~~~lA-qGll~~G~g 755 (813)
..++ ..-.|-..|+..|++..+... + .++...++.+.+.+ .+.++. .|-+.+| |-|.-++.-
T Consensus 174 ~~~~~~~~~~~sVDT~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~GNiySTglAmQAL~~~~~~ 253 (326)
T PF01122_consen 174 ENHNFYHGSQFSVDTGAMAVLALTCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKPNGLFGNIYSTGLAMQALSVSPSP 253 (326)
T ss_dssp HHSSTSS-STCHHHHHHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-TTS-BSSTTTHHHHHHHHTT-SS-
T ss_pred HHhhcccCCCCCccHHHHHHHHHHHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCCCCcccchhhHHHHHHHHhcCCCC
Confidence 5665 334577777777777666543 3 45666666665544 233333 3445555 444445431
Q ss_pred cc-----------cccccCCCCCCCChHHHHHHHHHHh
Q 003521 756 LL-----------TLNPYHSDRFLLSPTALAGIVTTLF 782 (813)
Q Consensus 756 ~~-----------tlsp~~sd~~~~~~~a~~gL~~~l~ 782 (813)
-. ++--...+..|-++.+++=++=+|.
T Consensus 254 ~~~~~w~C~k~~~~ll~~i~~G~F~nP~a~aQiLPaL~ 291 (326)
T PF01122_consen 254 PSESEWNCQKALDALLKEISQGAFQNPMAIAQILPALN 291 (326)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHT
T ss_pred CcchhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHc
Confidence 11 1111124556777777777776664
No 177
>KOG4766 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.45 E-value=78 Score=26.47 Aligned_cols=19 Identities=42% Similarity=0.691 Sum_probs=14.0
Q ss_pred CccccCCCHHHHHhHHHHH
Q 003521 31 DKKDEDLSEEDLALKQQLE 49 (813)
Q Consensus 31 ~~~~~~lseed~~lk~~l~ 49 (813)
++...||+|||.+.|++=.
T Consensus 16 Kk~~ke~deed~a~kqkqK 34 (64)
T KOG4766|consen 16 KKQAKELDEEDMAFKQKQK 34 (64)
T ss_pred hhhhhccCHHHHHHHHHHH
Confidence 3345799999999887643
No 178
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=21.16 E-value=2.2e+02 Score=28.17 Aligned_cols=65 Identities=26% Similarity=0.253 Sum_probs=42.3
Q ss_pred HHHHHHHhC--CCChhHHHHHHHHHHHH-HhhhccccccCCCccc-hhhhhHHHHHHHHhcCCCcc-hHHHHHHHHHHH
Q 003521 48 LELYVERVQ--DPDPGLQKVALESMRTE-IRTSTSSMTSVPKPLK-FLRPHYGTLKAYYETMPDSD-LKKYMADILSVL 121 (813)
Q Consensus 48 l~~~v~~l~--e~d~~l~~~aL~~L~~~-i~~~tss~tsvpkplk-~l~~~~~~l~~~ye~~~~~~-~k~~~AdilS~l 121 (813)
+++++++.. .++..++..+||.|..- ++..- =. ....+.+-|+++|...+++. .|-++|-++.|+
T Consensus 88 ~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~---------r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 88 LESLLPLASRKSKDRKVQKAALELLSAACIDKSC---------RTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHH---------HHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHH---------HHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 467777777 78889999999998732 22220 01 23345678999998776654 677777777664
Done!