Query 003521
Match_columns 813
No_of_seqs 262 out of 796
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 17:28:27 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003521.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1572-1576//hhsearch_pdb/003521hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ady_A RPN2, 26S proteasome re 1.0 1 1 1313.9 52.8 706 49-812 18-770 (963)
2 4ady_A RPN2, 26S proteasome re 1.0 1 1 463.5 35.4 525 174-787 68-681 (963)
3 1oyz_A Hypothetical protein YI 1.0 1 1 81.3 22.2 233 429-729 24-260 (280)
4 1oyz_A Hypothetical protein YI 1.0 1 1 79.9 22.6 224 466-750 24-248 (280)
5 1b3u_A Protein (protein phosph 1.0 1 1 75.7 20.2 298 410-748 258-583 (588)
6 1b3u_A Protein (protein phosph 1.0 1 1 73.4 23.5 260 409-713 296-585 (588)
7 3ltm_A Alpha-REP4; protein eng 1.0 1 1 72.1 17.8 186 466-718 20-206 (211)
8 1wa5_B Importin alpha subunit; 1.0 1 1 68.6 20.4 73 44-122 85-159 (530)
9 3ltj_A Alpharep-4; protein eng 1.0 1 1 68.0 18.7 75 629-713 122-196 (201)
10 1w63_A Adapter-related protein 1.0 1 1 67.3 26.7 242 431-715 316-577 (618)
No 1
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=1.00 E-value=1 Score=1313.86 Aligned_cols=706 Identities=20% Similarity=0.287 Sum_probs=658.7
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999947999347999999999998121366656897651023019999998720999612899999999987624666
Q 003521 49 ELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTMSAE 128 (813)
Q Consensus 49 ~~~v~~l~e~d~~l~~~AL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye~~~~~~~k~~~AdilS~l~~t~~~~ 128 (813)
..++++|+|+|++|+.+||++|+++|+++ |.+++++++.||++||+.+|+ .|+++|+|+|||| ||++
T Consensus 18 ~~~l~lL~e~~~~lk~~aL~~l~~~vd~~----------w~eia~~i~~ie~l~ed~~f~-~r~laalvaSkvy--y~Lg 84 (963)
T 4ady_A 18 APLLALLRENQDSVKTYALESINNVVDQL----------WSEISNELPDIEALYDDDTFS-DREMAALIASKVY--YNLG 84 (963)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHHH----------HHHHHTTHHHHHHHHSCTTCT-THHHHHHHHHHHH--HHHT
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH--EECC
T ss_conf 99999865996689999999999888601----------999983288999997689961-6889999998883--0236
Q ss_pred CCCCCHHHHHCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC----------CCH-HHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 630003566307-9889898622799999999999999850486----------578-8999999999999942799899
Q 003521 129 GERESLKYRLLG-SEGDIGSWGHEYVRNLAGEIAQEYAKRQTDE----------ASI-DDLMELVQEIVAFHMKHNAEPE 196 (813)
Q Consensus 129 ~~~~~L~y~L~~-~~~d~~~wgheYvr~l~~ei~~~y~~~~~~~----------~~~-~~L~~Lv~~iv~~~l~~n~e~~ 196 (813)
+++++|+|||+| +.||+++ +||||+||+++|||+|++.+.+. ..+ ++|++||++||+||++||+|+|
T Consensus 85 ~~~~al~yaL~aG~~fd~~~-~seYv~tiis~cid~y~~~~~~~~~~~~~~~~~~~id~rL~~Lv~~iv~~cl~hnae~~ 163 (963)
T 4ady_A 85 EYESAVKYALAAKDRFDIDE-KSQFVETIVSKSIEMYVQEASKQYTKDEQFYTKDIIDPKLTSIFERMIEKCLKASELKL 163 (963)
T ss_dssp CHHHHHHHHHHHGGGSCTTS-CSHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGSSCSCHHHHHHHHHHHHHHHHHTCHHH
T ss_pred CHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 66899999985798678888-53579999999999999998630355432223345688999999999999984898998
Q ss_pred HHHHHHHCCCHHHHHHHHHC-------CCHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHHHHCCC--CHHHHHHHHHHC
Q ss_conf 99998832770236887510-------27489999998622469999908--89999999997138--999999999947
Q 003521 197 AVDLLMEVEDLDLLVEHVDA-------TNFKRTCLYLTSAAKYLPGPDDM--LVLDIAYMIYLKFE--EFPNALQIALFL 265 (813)
Q Consensus 197 AidlaLE~~~ld~i~~~vd~-------~~~~rv~~Yl~~~~~~~~~p~~~--~il~~~~~iy~~~~--~~~~al~~al~l 265 (813)
|||||+|++|+|+|+++||+ +|+.|+|+|+++|++++++|+++ ++|+++++||++++ +|+++++|+++|
T Consensus 164 AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~k~~~~dy~~a~~~ai~L 243 (963)
T 4ady_A 164 ALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMNMPNCDYLTLNKVVVNL 243 (963)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 87899998239999999985312445466899999999985236998478999999999999807812399999999975
Q ss_pred CCHHHHHHHHHH---CCHHHHHHHHHHHHHH---HCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 993789999985---2627778999999984---2012224578999963089999997064753457879999510499
Q 003521 266 DNMQYVKQIFTS---CDDLLRKKQFCYILAR---HGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEP 339 (813)
Q Consensus 266 ~d~~~i~~il~~---~~d~~~~~Qlaf~Lar---q~~~~~~~~~~~~~~~~~~~l~~il~n~~l~~~fl~~~~~l~~~d~ 339 (813)
||++.++++|++ |+|.+++||+||+|+| |+|+.++.+.... .+..+++.+||+|+.++++|++|++++|.+|+
T Consensus 244 nD~~li~~if~~l~~~~d~l~ayQiAFdL~~~~~Q~fL~~v~~~l~~-~e~~~kL~~ILsg~~~~~Lyl~FL~~~n~~d~ 322 (963)
T 4ady_A 244 NDAGLALQLFKKLKEENDEGLSAQIAFDLVSSASQQLLEILVTELTA-QGYDPALLNILSGLPTCDYYNTFLLNNKNIDI 322 (963)
T ss_dssp TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH-TTCCHHHHHHTTSHHHHHHHHHHHHHHCCCCH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCC-CCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCH
T ss_conf 99889999999877264388899999997102136799999874333-30068999986799738999999986565430
Q ss_pred CCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99478997421058887674326798869999999997602587654445788998888775333456145999999954
Q 003521 340 KSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLG 419 (813)
Q Consensus 340 k~~e~iyK~~l~~~r~~~~~~~dsa~~~la~~f~nafvnaG~~~D~~l~~~~~~~~~~~~~~wl~k~~~~~k~~a~aslG 419 (813)
++|+++ |++++ +|+ +++|+|++|+|||||+||++|+||+++.+ |++|+++|+||+|++|+|
T Consensus 323 ~~l~~~-K~~ld-~r~--------s~~~~A~~f~Naf~naG~~~D~~l~~~~~---------Wl~k~~~~~k~sA~aSLG 383 (963)
T 4ady_A 323 GLLNKS-KSSLD-GKF--------SLFHTAVSVANGFMHAGTTDNSFIKANLP---------WLGKAQNWAKFTATASLG 383 (963)
T ss_dssp HHHHHH-HHHSC-TTS--------HHHHHHHHHHHHHHTTTTCCCHHHHHCHH---------HHHHCCTHHHHHHHHHHH
T ss_pred HHHHHH-HHHHC-CHH--------HHHHHHHHHHHHHHHCCCCCCHHHHCCHH---------HHHCCCHHHHHHHHHHHH
T ss_conf 008899-86303-214--------67879999988887278775424320305---------440464089999998700
Q ss_pred HHCCCCCCHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC--------HHHHHHHHHH
Q ss_conf 4304561025885744203---7981468999999987616998990359999987406988--------7999999999
Q 003521 420 MILLWDVDSGLAQIDKYFH---STDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRED--------ACIRIGAIMG 488 (813)
Q Consensus 420 lI~~~~~~~~l~~l~~yL~---s~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~~--------~~v~~gA~lG 488 (813)
+||.||+++|+++|++||+ ++++++++||++|+|++++|++++ ++++|.++|.+++ +.+++||++|
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~---~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD---TTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH---HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHH---HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 1003854889999998624567971999999999989862897179---9999999870766333456548999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 98984359887799999876048998436888999999667607999899999999985058555585247788999998
Q 003521 489 LGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGL 568 (813)
Q Consensus 489 LGlay~Gs~~e~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~~Gs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgL 568 (813)
||++|+||+++++++.|++++.+++ ..+..+|++|||++|+||||.++++.|++++++ ++ +++++|++++|||+
T Consensus 461 LGla~~GS~~eev~e~L~~~L~dd~--~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e---~~-~e~vrR~aalgLGl 534 (963)
T 4ady_A 461 IGLAAMGSANIEVYEALKEVLYNDS--ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE---TQ-HGNITRGLAVGLAL 534 (963)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH---CS-CHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC---CC-CHHHHHHHHHHHHH
T ss_conf 8998667898899999999995677--878999999976351256889999999999862---58-48999999999875
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 63389235999999864212444545668999999824798999999983100167889430648899988763034012
Q 003521 569 LYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELG 648 (813)
Q Consensus 569 l~lG~~e~a~~lle~L~~~~~~~~r~~~~~~~~layaGTgn~~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g 648 (813)
+++|+++.++.+++.|..+++|+.|+++++++||||+||||+.+||+|||+|.++.++ +|||+||+|||+|++|++
T Consensus 535 l~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d--~VRraAViaLGlI~~g~~-- 610 (963)
T 4ady_A 535 INYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSND--DVRRAAVIALGFVLLRDY-- 610 (963)
T ss_dssp HTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCH--HHHHHHHHHHHHHTSSSC--
T ss_pred HHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHHCCCCH--
T ss_conf 5079867799999999717878887999999999861789899999999872448747--999999999875206987--
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCH---HHHHH
Q ss_conf 779999999996119966983889998401268984469999987531986498999999999880799914---89999
Q 003521 649 LEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNA---RIAGM 725 (813)
Q Consensus 649 ~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~agt~~~~vid~L~~l~~D~d~~Vr~~AiiAlGlV~agtnn~---ri~~~ 725 (813)
+|+++++++|++++||+||+|+|+|||++|+|||+++++++|++++||+|++||++|++|||+||+||||+ |++++
T Consensus 611 -e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~ 689 (963)
T 4ady_A 611 -TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADI 689 (963)
T ss_dssp -SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHH
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf -7799999999866988899989999987546998579999999980699789999999999998257864324689999
Q ss_pred HHHHHHHHC---CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHH-HHHH
Q ss_conf 998763320---371468999999765530899522466679999889689999999996611444433440558-9999
Q 003521 726 LRNLSSYYY---KDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHY-VLYF 801 (813)
Q Consensus 726 Lr~l~~~~~---~d~~~~f~~~iAqGll~~G~g~~tlsp~~sd~~~~~~~a~~gLl~~l~~~ld~~~~~~~~~~~-l~~~ 801 (813)
||||++||+ +|++++||+|+||||+||||||+||||+|+||++++++|++||++|++. |||| |+||
T Consensus 690 l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~tis~~~s~~~~~~~~a~~Gl~~f~q~----------wyw~pl~~~ 759 (963)
T 4ady_A 690 NKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQLENADTGTLDTKSVVGLVMFSQF----------WYWFPLAHF 759 (963)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEEECSBCTTTCCBCHHHHHHHHHHTTT----------TTCGGGGGG
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH----------HHHHHHHHH
T ss_conf 9999999724464588899999998777507995588762166788779999999999999----------998899999
Q ss_pred HHHHHCCCCCC
Q ss_conf 96421444457
Q 003521 802 LVLAMQNVTDC 812 (813)
Q Consensus 802 l~~a~~Pr~l~ 812 (813)
|++||+|||+.
T Consensus 760 lsla~~Pt~li 770 (963)
T 4ady_A 760 LSLSFTPTTVI 770 (963)
T ss_dssp GGGGEEECBEE
T ss_pred HHHHCCCCEEE
T ss_conf 99855886798
No 2
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=1.00 E-value=1 Score=463.52 Aligned_cols=525 Identities=18% Similarity=0.240 Sum_probs=394.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHH---HHHHCCCHHHHHHHHHHHCCC-----------CCCCCCH
Q ss_conf 88999999999999942799899999988327702368---875102748999999862246-----------9999908
Q 003521 174 IDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLV---EHVDATNFKRTCLYLTSAAKY-----------LPGPDDM 239 (813)
Q Consensus 174 ~~~L~~Lv~~iv~~~l~~n~e~~AidlaLE~~~ld~i~---~~vd~~~~~rv~~Yl~~~~~~-----------~~~p~~~ 239 (813)
-.+|+++|.+.|+||+ ++|.+|+.++|.++.++.+. +||+.-..+.|-.|...+..- .++|+..
T Consensus 68 ~r~laalvaSkvyy~L--g~~~~al~yaL~aG~~fd~~~~seYv~tiis~cid~y~~~~~~~~~~~~~~~~~~~id~rL~ 145 (963)
T 4ady_A 68 DREMAALIASKVYYNL--GEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASKQYTKDEQFYTKDIIDPKLT 145 (963)
T ss_dssp THHHHHHHHHHHHHHH--TCHHHHHHHHHHHGGGSCTTSCSHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGSSCSCHHHH
T ss_pred HHHHHHHHHHHHHEEC--CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf 6889999998883023--66689999998579867888853579999999999999998630355432223345688999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHC--CH--HHHHHHHHHHH--H---------HHCCC-------
Q ss_conf 899999999971389999999999479937899999852--62--77789999999--8---------42012-------
Q 003521 240 LVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSC--DD--LLRKKQFCYIL--A---------RHGIT------- 297 (813)
Q Consensus 240 ~il~~~~~iy~~~~~~~~al~~al~l~d~~~i~~il~~~--~d--~~~~~Qlaf~L--a---------rq~~~------- 297 (813)
.+.+.++.-+.+++.+.+|+.++++..+.|.+++++.++ ++ .....-+.|.+ + |.+++
T Consensus 146 ~Lv~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy 225 (963)
T 4ady_A 146 SIFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFL 225 (963)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999998489899887899998239999999985312445466899999999985236998478999999999999
Q ss_pred CCCCCCCCC--------CCCHHHHHHHHHCCC-----C-------------CCHHHHH-----------HHHHHHCCCCC
Q ss_conf 224578999--------963089999997064-----7-------------5345787-----------99995104999
Q 003521 298 LELDDDMVP--------DDDDRYALQDIVNNV-----K-------------LSEGYLT-----------LARDIEVMEPK 340 (813)
Q Consensus 298 ~~~~~~~~~--------~~~~~~~l~~il~n~-----~-------------l~~~fl~-----------~~~~l~~~d~k 340 (813)
..++ .+.. .-++.+.+.+++... . -+..|+. +.+.++|++++
T Consensus 226 ~k~~-~~dy~~a~~~ai~LnD~~li~~if~~l~~~~d~l~ayQiAFdL~~~~~Q~fL~~v~~~l~~~e~~~kL~~ILsg~ 304 (963)
T 4ady_A 226 MNMP-NCDYLTLNKVVVNLNDAGLALQLFKKLKEENDEGLSAQIAFDLVSSASQQLLEILVTELTAQGYDPALLNILSGL 304 (963)
T ss_dssp HHSS-SCCHHHHHHHHHHHTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTCCHHHHHHTTSH
T ss_pred HHCC-CHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCC
T ss_conf 8078-123999999999759988999999987726438889999999710213679999987433330068999986799
Q ss_pred CHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 94789974210588876743267988699999999976025876544457889988887753334561459999999544
Q 003521 341 SPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGM 420 (813)
Q Consensus 341 ~~e~iyK~~l~~~r~~~~~~~dsa~~~la~~f~nafvnaG~~~D~~l~~~~~~~~~~~~~~wl~k~~~~~k~~a~aslGl 420 (813)
.+.++|++||...+.++...++..+.++.. .++ -.-..++.+.|+
T Consensus 305 ~~~~Lyl~FL~~~n~~d~~~l~~~K~~ld~--r~s---------------------------------~~~~A~~f~Naf 349 (963)
T 4ady_A 305 PTCDYYNTFLLNNKNIDIGLLNKSKSSLDG--KFS---------------------------------LFHTAVSVANGF 349 (963)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHHSCT--TSH---------------------------------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHCC--HHH---------------------------------HHHHHHHHHHHH
T ss_conf 738999999986565430008899863032--146---------------------------------787999998888
Q ss_pred HCCCCCCHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHCCC
Q ss_conf 304561025-8857442037981468999999987616998990359999987406---988799999999998984359
Q 003521 421 ILLWDVDSG-LAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVG---REDACIRIGAIMGLGISYAGT 496 (813)
Q Consensus 421 I~~~~~~~~-l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~---~~~~~v~~gA~lGLGlay~Gs 496 (813)
+|.|...+. +..-.+|+++..+|.++||++++|+||.|+.++ .+.+|.+||. +.++.+++||++|||++++|+
T Consensus 350 ~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~---gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~ 426 (963)
T 4ady_A 350 MHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLE---GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGF 426 (963)
T ss_dssp HTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCTTT---HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTT
T ss_pred HHCCCCCCHHHHCCHHHHHCCCHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 7278775424320305440464089999998700100385488---9999998624567971999999999989862897
Q ss_pred CCHHHHHHHHHHCCCCC-C-----CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 88779999987604899-8-----43688899999966760799989999999998505855558524778899999863
Q 003521 497 QNDQIRHKLSTILNDAK-S-----PLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLY 570 (813)
Q Consensus 497 ~~e~i~e~L~~~l~d~~-~-----~~e~~~~AalaLGLi~~Gs~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~ 570 (813)
++ ++.++|.+.+.+++ + ...++++|++|||++|+||+++++++.|++.+.+. +.
T Consensus 427 ~~-~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd------~~------------- 486 (963)
T 4ady_A 427 GR-DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND------SA------------- 486 (963)
T ss_dssp TH-HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC------CH-------------
T ss_pred CH-HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC------CH-------------
T ss_conf 17-99999999870766333456548999999999899866789889999999999567------78-------------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 38923599999986421244454566899999982479899999998310016788943064889998876303401277
Q 003521 571 LGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLE 650 (813)
Q Consensus 571 lG~~e~a~~lle~L~~~~~~~~r~~~~~~~~layaGTgn~~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e 650 (813)
+.++++++++|+.|+||||..+++.||+++.++.++ ++||++++||||+.+|++ +
T Consensus 487 --------------------~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e--~vrR~aalgLGll~~g~~---e 541 (963)
T 4ady_A 487 --------------------TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHG--NITRGLAVGLALINYGRQ---E 541 (963)
T ss_dssp --------------------HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCH--HHHHHHHHHHHHHTTTCG---G
T ss_pred --------------------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHCCCH---H
T ss_conf --------------------789999999763512568899999999998625848--999999999875507986---7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 999999999611996698388999840126898446999-9987531986498999999999880799914899999987
Q 003521 651 MAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMD-TLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNL 729 (813)
Q Consensus 651 ~~~~~l~~L~~~~~~~VR~g~~lALGL~~agt~~~~vid-~L~~l~~D~d~~Vr~~AiiAlGlV~agtnn~ri~~~Lr~l 729 (813)
.++.+++.|..+.+|++|+++++++|++|+||||..+|+ +|+.+..|.+++||+.|++|+|+|++|... .+..++..+
T Consensus 542 ~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e-~v~rlv~~L 620 (963)
T 4ady_A 542 LADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT-TVPRIVQLL 620 (963)
T ss_dssp GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS-SHHHHTTTG
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHH
T ss_conf 7999999997178788879999999998617898999999998724487479999999998752069877-799999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCC----CCCCCCCCC-CCCCHHHHHHHHHHHHHHCCC
Q ss_conf 6332037146899999976553089952----246667999-988968999999999661144
Q 003521 730 SSYYYKDANLLFCVRIAQGLVHMGKGLL----TLNPYHSDR-FLLSPTALAGIVTTLFACLDM 787 (813)
Q Consensus 730 ~~~~~~d~~~~f~~~iAqGll~~G~g~~----tlsp~~sd~-~~~~~~a~~gLl~~l~~~ld~ 787 (813)
.. +.|+++|+++.+|+|++++|.++. +|+++.+|. .++++.|+.+|.++...--+.
T Consensus 621 ~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna 681 (963)
T 4ady_A 621 SK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEK 681 (963)
T ss_dssp GG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTT
T ss_pred HH--CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 86--69888999899999875469985799999999806997899999999999982578643
No 3
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=1.00 E-value=1 Score=81.29 Aligned_cols=233 Identities=12% Similarity=0.075 Sum_probs=125.4
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC-HHHHHHHHH
Q ss_conf 5885744203798146899999998761699899035999998740698879999999999898435988-779999987
Q 003521 429 GLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN-DQIRHKLST 507 (813)
Q Consensus 429 ~l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~~-e~i~e~L~~ 507 (813)
++..+-..|.+++..++..|+.+||-+.. ..++..|...+.+++..+|..|+.+||-....... ..+...|..
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~ 97 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNN 97 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCCC------CHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 07999999982897999999999871588------049999999874998999999999999854353131689999999
Q ss_pred H-CCCCCCCHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 6-04899843688899999966760799--98999999999850585555852477889999986338923599999986
Q 003521 508 I-LNDAKSPLDVIAFSAISLGLIYVGSC--NEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVS 584 (813)
Q Consensus 508 ~-l~d~~~~~e~~~~AalaLGLi~~Gs~--~~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~lG~~e~a~~lle~L 584 (813)
. +.|+ +.++...++.+||.+..+.. ..++.+.++..+.
T Consensus 98 ~~~~d~--~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~------------------------------------- 138 (280)
T 1oyz_A 98 MALNDK--SACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF------------------------------------- 138 (280)
T ss_dssp HHHHCS--CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT-------------------------------------
T ss_pred HHHCCC--CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH-------------------------------------
T ss_conf 875499--89999999999998703477133999999999961-------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 42124445456689999998247989999999831001678894306488999887630340127799999999961199
Q 003521 585 KTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGE 664 (813)
Q Consensus 585 ~~~~~~~~r~~~~~~~~layaGTgn~~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~~~~~g~e~~~~~l~~L~~~~~ 664 (813)
++++..|..++.+++ ..| +..++..|+....+ .+. .||..|+.+++.+.... +.+...+..++++.+
T Consensus 139 --d~~~~vR~~a~~aL~--~~~--~~~~~~~L~~~l~d-~~~--~vr~~a~~aL~~~~~~~----~~~~~~L~~~l~d~~ 205 (280)
T 1oyz_A 139 --DKSTNVRRATAFAIS--VIN--DKATIPLLINLLKD-PNG--DVRNWAAFAININKYDN----SDIRDCFVEMLQDKN 205 (280)
T ss_dssp --CSCHHHHHHHHHHHH--TC-----CCHHHHHHHHTC-SSH--HHHHHHHHHHHHHTCCC----HHHHHHHHHHTTCSC
T ss_pred --CCCHHHHHHHHHHHH--HCC--CHHHHHHHHHHHCC-CCH--HHHHHHHHHHHHHCCCC----HHHHHHHHHHHCCCC
T ss_conf --999999999999987--338--78789999998749-988--99999999998625376----999999999834999
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 66983889998401268984469999987531986498999999999880799914899999987
Q 003521 665 QNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNL 729 (813)
Q Consensus 665 ~~VR~g~~lALGL~~agt~~~~vid~L~~l~~D~d~~Vr~~AiiAlGlV~agtnn~ri~~~Lr~l 729 (813)
+.||..++.+||-+ ++..++..|..+..|.+ ||..|+.|+|-++- +++...|..+
T Consensus 206 ~~vR~~A~~aL~~~----~~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~----~~~~~~L~~~ 260 (280)
T 1oyz_A 206 EEVRIEAIIGLSYR----KDKRVLSVLCDELKKNT--VYDDIIEAAGELGD----KTLLPVLDTM 260 (280)
T ss_dssp HHHHHHHHHHHHHT----TCGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC----GGGHHHHHHH
T ss_pred HHHHHHHHHHHHHH----CCHHHHHHHHHHHCCCC--HHHHHHHHHHHCCC----HHHHHHHHHH
T ss_conf 89999999999983----88736999999852763--99999999985596----3056999999
No 4
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=1.00 E-value=1 Score=79.86 Aligned_cols=224 Identities=14% Similarity=0.134 Sum_probs=115.6
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999874069887999999999989843598877999998760489984368889999996676079998999999999
Q 003521 466 ALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFA 545 (813)
Q Consensus 466 ~~~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~~e~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~~Gs~~~e~~e~ll~~ 545 (813)
.+..|...|.+++..+|..|+..||-. | .+++...|...+.|+ ...+...|+.+||.+ |.... ....++..
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~--~--~~~~~~~L~~~l~d~--~~~vR~~A~~aL~~l--~~~~~-~~~~l~~~ 94 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLR--G--GQDAVRLAIEFCSDK--NYIRRDIGAFILGQI--KICKK-CEDNVFNI 94 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHH--C--CHHHHHHHHHHHTCS--SHHHHHHHHHHHHHS--CCCTT-THHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCC--C--CCHHHHHHHHHHCCC--CHHHHHHHHHHHHHH--CCCCC-CCHHHHHH
T ss_conf 079999999828979999999998715--8--804999999987499--899999999999985--43531-31689999
Q ss_pred HHCCCCCCCCCH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf 850585555852-4778899999863389235999999864212444545668999999824798999999983100167
Q 003521 546 LMDRSESELGEP-LTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHH 624 (813)
Q Consensus 546 L~~~~~~~l~e~-~~r~~~lglgLl~lG~~e~a~~lle~L~~~~~~~~r~~~~~~~~layaGTgn~~~iq~LL~~~~~~~ 624 (813)
+...-..+ .+. +.+.++.++|-+.-+.. ......+..|.....+ .
T Consensus 95 L~~~~~~d-~~~~vr~~a~~aL~~l~~~~~--------------------------------~~~~~~~~~L~~~l~d-~ 140 (280)
T 1oyz_A 95 LNNMALND-KSACVRATAIESTAQRCKKNP--------------------------------IYSPKIVEQSQITAFD-K 140 (280)
T ss_dssp HHHHHHHC-SCHHHHHHHHHHHHHHHHHCG--------------------------------GGHHHHHHHHHHHTTC-S
T ss_pred HHHHHHCC-CCHHHHHHHHHHHHHHHCCCC--------------------------------CCCHHHHHHHHHHHHC-C
T ss_conf 99987549-989999999999998703477--------------------------------1339999999999619-9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHH
Q ss_conf 88943064889998876303401277999999999611996698388999840126898446999998753198649899
Q 003521 625 EKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAM 704 (813)
Q Consensus 625 ~d~~~vrr~AvlglalI~~~~~~g~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~agt~~~~vid~L~~l~~D~d~~Vr~ 704 (813)
+. .||..|+.+++-+. ++ +.++. +..++.+.++.||..++.+||.+ |.....+++.|..+.+|.+..||.
T Consensus 141 ~~--~vR~~a~~aL~~~~--~~---~~~~~-L~~~l~d~~~~vr~~a~~aL~~~--~~~~~~~~~~L~~~l~d~~~~vR~ 210 (280)
T 1oyz_A 141 ST--NVRRATAFAISVIN--DK---ATIPL-LINLLKDPNGDVRNWAAFAININ--KYDNSDIRDCFVEMLQDKNEEVRI 210 (280)
T ss_dssp CH--HHHHHHHHHHHTC--------CCHHH-HHHHHTCSSHHHHHHHHHHHHHH--TCCCHHHHHHHHHHTTCSCHHHHH
T ss_pred CH--HHHHHHHHHHHHCC--CH---HHHHH-HHHHHCCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHCCCCHHHHH
T ss_conf 99--99999999987338--78---78999-99987499889999999999862--537699999999983499989999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 9999999880799914899999987633203714689999997655
Q 003521 705 AAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLV 750 (813)
Q Consensus 705 ~AiiAlGlV~agtnn~ri~~~Lr~l~~~~~~d~~~~f~~~iAqGll 750 (813)
.|+.++|-++ +++....|..+. +++.++..+.-|.|-+
T Consensus 211 ~A~~aL~~~~----~~~~~~~L~~~l----~d~~vr~~a~~aL~~i 248 (280)
T 1oyz_A 211 EAIIGLSYRK----DKRVLSVLCDEL----KKNTVYDDIIEAAGEL 248 (280)
T ss_dssp HHHHHHHHTT----CGGGHHHHHHHH----TSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHC----CHHHHHHHHHHH----CCCCHHHHHHHHHHHC
T ss_conf 9999999838----873699999985----2763999999999855
No 5
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=75.65 Aligned_cols=298 Identities=14% Similarity=0.077 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHCCCC-----CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHCCCC
Q ss_conf 5999999954430456-----1025885744203798146899999998761699899------0359999987406988
Q 003521 410 GKMSAAASLGMILLWD-----VDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRND------CDPALALLSEYVGRED 478 (813)
Q Consensus 410 ~k~~a~aslGlI~~~~-----~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e------~d~~~~lL~~~L~~~~ 478 (813)
.+..++.++|.+...- ....+..+...+.++++.+|..|..++|-+......+ .+.++..+...+.+++
T Consensus 258 vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~ 337 (588)
T 1b3u_A 258 VRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDAN 337 (588)
T ss_dssp HHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999819521055899999998589958999999987999999727444365799999999999861998
Q ss_pred HHHHHHHHHHHHHHHCCCCCHH----HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 7999999999989843598877----999998760489984368889999996676079998999999999850585555
Q 003521 479 ACIRIGAIMGLGISYAGTQNDQ----IRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESEL 554 (813)
Q Consensus 479 ~~v~~gA~lGLGlay~Gs~~e~----i~e~L~~~l~d~~~~~e~~~~AalaLGLi~~Gs~~~e~~e~ll~~L~~~~~~~l 554 (813)
..+|..++.+||-.....+.+. +...+...+.|. ..++...+.-++|-+.-..+.....+.++..+......
T Consensus 338 ~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~--~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d-- 413 (588)
T 1b3u_A 338 QHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDE--CPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAED-- 413 (588)
T ss_dssp HHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCS--CHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC--
T ss_conf 89999999999999888627678888999999983798--36899999998999997549898988889999998359--
Q ss_pred CCHHHHHHH-HHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 852477889-9999863--3892359999998642124445456689999998247989999999831001678894306
Q 003521 555 GEPLTRLIP-LGLGLLY--LGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQ 631 (813)
Q Consensus 555 ~e~~~r~~~-lglgLl~--lG~~e~a~~lle~L~~~~~~~~r~~~~~~~~layaGTgn~~~iq~LL~~~~~~~~d~~~vr 631 (813)
.+...|..+ -.++.+. +|... -....+..++....+. +. .||
T Consensus 414 ~~~~vr~~~~~~l~~l~~~~~~~~--------------------------------~~~~l~~~l~~~l~d~-~~--~Vr 458 (588)
T 1b3u_A 414 AKWRVRLAIIEYMPLLAGQLGVEF--------------------------------FDEKLNSLCMAWLVDH-VY--AIR 458 (588)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCGGG--------------------------------CCHHHHHHHHHGGGCS-SH--HHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCHHH--------------------------------HHHHHHHHHHHHHCCC-CH--HHH
T ss_conf 981399999999999998809898--------------------------------9999999999882598-19--999
Q ss_pred HHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHCCCCHHHHHH
Q ss_conf 4889998876303--4012779999999996119966983889998401268984----469999987531986498999
Q 003521 632 GPAVLGIAMVAMA--EELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK----VNVMDTLSRLSHDTDSEVAMA 705 (813)
Q Consensus 632 r~AvlglalI~~~--~~~g~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~agt~~----~~vid~L~~l~~D~d~~Vr~~ 705 (813)
..|+.+++-+.-. .+.-.+.+...+..+..+.++.+|..++.++|-++..-+. ..++..|.++.+|++..||.+
T Consensus 459 ~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~ 538 (588)
T 1b3u_A 459 EAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFN 538 (588)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 99999999999996844578889999999831898799999999999999766989999999999986678998627999
Q ss_pred HHHHHHHHCCCCCC----HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999988079991----48999999876332037146899999976
Q 003521 706 AVISLGLIGSGTNN----ARIAGMLRNLSSYYYKDANLLFCVRIAQG 748 (813)
Q Consensus 706 AiiAlGlV~agtnn----~ri~~~Lr~l~~~~~~d~~~~f~~~iAqG 748 (813)
++-++|-+...-+. ..+...+..+.. ..|+.+|..+.-|.+
T Consensus 539 a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~--d~d~~vr~~a~~al~ 583 (588)
T 1b3u_A 539 VAKSLQKIGPILDNSTLQSEVKPILEKLTQ--DQDVDVKYFAQEALT 583 (588)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHHHHTT--CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHH
T ss_conf 999999999986536459999999998747--996669999999999
No 6
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=73.45 Aligned_cols=260 Identities=15% Similarity=0.090 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHCCCCC---------CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHCCC
Q ss_conf 459999999544304561---------0258857442037981468999999987616998990--35999998740698
Q 003521 409 HGKMSAAASLGMILLWDV---------DSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDC--DPALALLSEYVGRE 477 (813)
Q Consensus 409 ~~k~~a~aslGlI~~~~~---------~~~l~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~--d~~~~lL~~~L~~~ 477 (813)
..+-.+..++|-+-..-. ..-+..+...+.+.+..+|..++.++|-+......+. +.+...+...+.++
T Consensus 296 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~ 375 (588)
T 1b3u_A 296 EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDE 375 (588)
T ss_dssp HHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999998799999972744436579999999999986199889999999999999888627678888999999983798
Q ss_pred CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH----CCCCCCCHHHHHHHHHHHHHHHC--CCC--CHHHHHHHHHHHHCC
Q ss_conf 8799999999998984359887799999876----04899843688899999966760--799--989999999998505
Q 003521 478 DACIRIGAIMGLGISYAGTQNDQIRHKLSTI----LNDAKSPLDVIAFSAISLGLIYV--GSC--NEEVAQAIIFALMDR 549 (813)
Q Consensus 478 ~~~v~~gA~lGLGlay~Gs~~e~i~e~L~~~----l~d~~~~~e~~~~AalaLGLi~~--Gs~--~~e~~e~ll~~L~~~ 549 (813)
+..+|..++-+|+-.......+...+.+.|. +.|. ...+...++-++|.+.- |.. ...+...++..+.
T Consensus 376 ~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-- 451 (588)
T 1b3u_A 376 CPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDA--KWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLV-- 451 (588)
T ss_dssp CHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGG--
T ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC--
T ss_conf 368999999989999975498989888899999983599--8139999999999999880989899999999998825--
Q ss_pred CCCCCCCHHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHCCCC
Q ss_conf 85555852477-88999998633892359999998642124445456689999998247989----99999983100167
Q 003521 550 SESELGEPLTR-LIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNV----LKVQNLLGHCAQHH 624 (813)
Q Consensus 550 ~~~~l~e~~~r-~~~lglgLl~lG~~e~a~~lle~L~~~~~~~~r~~~~~~~~layaGTgn~----~~iq~LL~~~~~~~ 624 (813)
+ .+..+| .+..+++-+. ...|+. ..+..|.... .+.
T Consensus 452 -d---~~~~Vr~~a~~~l~~l~----------------------------------~~~~~~~~~~~llp~l~~~~-~~~ 492 (588)
T 1b3u_A 452 -D---HVYAIREAATSNLKKLV----------------------------------EKFGKEWAHATIIPKVLAMS-GDP 492 (588)
T ss_dssp -C---SSHHHHHHHHHHHHHHH----------------------------------HHHCHHHHHHHTHHHHHHTT-TCS
T ss_pred -C---CCHHHHHHHHHHHHHHH----------------------------------HHHCCHHHHHHHHHHHHHHH-HCC
T ss_conf -9---81999999999999999----------------------------------99684457888999999983-189
Q ss_pred CCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHCCC
Q ss_conf 88943064889998876303--4012779999999996119966983889998401268984----46999998753198
Q 003521 625 EKGEAYQGPAVLGIAMVAMA--EELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK----VNVMDTLSRLSHDT 698 (813)
Q Consensus 625 ~d~~~vrr~AvlglalI~~~--~~~g~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~agt~~----~~vid~L~~l~~D~ 698 (813)
+. .+|..++-+++-+.-. .+.-.+.+...+..++.+.++.||..++-++|-++..-+. ..++..|.++..|.
T Consensus 493 ~~--~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~ 570 (588)
T 1b3u_A 493 NY--LHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQ 570 (588)
T ss_dssp CH--HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCS
T ss_pred CH--HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCC
T ss_conf 87--9999999999999976698999999999998667899862799999999999998653645999999999874799
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 649899999999988
Q 003521 699 DSEVAMAAVISLGLI 713 (813)
Q Consensus 699 d~~Vr~~AiiAlGlV 713 (813)
|..||..|.-|++-+
T Consensus 571 d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 571 DVDVKYFAQEALTVL 585 (588)
T ss_dssp SHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHH
T ss_conf 666999999999976
No 7
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=1.00 E-value=1 Score=72.07 Aligned_cols=186 Identities=20% Similarity=0.219 Sum_probs=102.7
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999874069887999999999989843598877999998760489984368889999996676079998999999999
Q 003521 466 ALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFA 545 (813)
Q Consensus 466 ~~~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~~e~i~e~L~~~l~d~~~~~e~~~~AalaLGLi~~Gs~~~e~~e~ll~~ 545 (813)
.+..|...|.+++..+|..|+..||-. | ..+....|...+.|+ ..++...|+.+||.+ ++.+....++..
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~--~--~~~~~~~L~~~l~~~--~~~vr~~a~~aL~~~----~~~~~~~~L~~~ 89 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKI--G--DERAVEPLIKALKDE--DAWVRRAAADALGQI----GDERAVEPLIKA 89 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHH--C--CGGGHHHHHHHTTCS--CHHHHHHHHHHHHHH----CCGGGHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHH--C--CCCHHHHHHHHHCCC--CHHHHHHHHHHHHHH----CCHHHHHHHHHH
T ss_conf 899999987399999999999999872--8--710899999988299--999999999999865----888999999998
Q ss_pred HHCCCCCCCCCHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf 85058555585247788-99999863389235999999864212444545668999999824798999999983100167
Q 003521 546 LMDRSESELGEPLTRLI-PLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHH 624 (813)
Q Consensus 546 L~~~~~~~l~e~~~r~~-~lglgLl~lG~~e~a~~lle~L~~~~~~~~r~~~~~~~~layaGTgn~~~iq~LL~~~~~~~ 624 (813)
+.+ .++.+|.. ..++|- . |+...+..|..... +.
T Consensus 90 l~~------~~~~vr~~a~~aL~~------------------------------------~--~~~~~~~~L~~~l~-d~ 124 (211)
T 3ltm_A 90 LKD------EDGWVRQSAAVALGQ------------------------------------I--GDERAVEPLIKALK-DE 124 (211)
T ss_dssp TTC------SSHHHHHHHHHHHHH------------------------------------H--CCGGGHHHHHHHTT-CS
T ss_pred HCC------CCHHHHHHHHHHHHH------------------------------------H--CCHHHHHHHHHHHH-CC
T ss_conf 759------988999999999998------------------------------------5--76999999999873-98
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHH
Q ss_conf 88943064889998876303401277999999999611996698388999840126898446999998753198649899
Q 003521 625 EKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAM 704 (813)
Q Consensus 625 ~d~~~vrr~AvlglalI~~~~~~g~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~agt~~~~vid~L~~l~~D~d~~Vr~ 704 (813)
+. .||..|+.+++-+ +++ +. ...+..++++.++.||..+..+||-+ +...+++.|..+.+|.+..||.
T Consensus 125 ~~--~vr~~a~~aL~~~--~~~---~~-~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~ 192 (211)
T 3ltm_A 125 DW--FVRIAAAFALGEI--GDE---RA-VEPLIKALKDEDGWVRQSAADALGEI----GGERVRAAMEKLAETGTGFARK 192 (211)
T ss_dssp SH--HHHHHHHHHHHHH--CCG---GG-HHHHHHHTTCSSHHHHHHHHHHHHHH----CSHHHHHHHHHHHHHCCHHHHH
T ss_pred CH--HHHHHHHHHHHHC--CCH---HH-HHHHHHHHCCCCHHHHHHHHHHHHHH----CCHHHHHHHHHHHHCCCHHHHH
T ss_conf 99--9999999999871--987---79-99999987599899999999999872----9665899999998599889999
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 99999998807999
Q 003521 705 AAVISLGLIGSGTN 718 (813)
Q Consensus 705 ~AiiAlGlV~agtn 718 (813)
.|+.+|+-+.-..+
T Consensus 193 ~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 193 VAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHHHHC------
T ss_pred HHHHHHHHCCCCCC
T ss_conf 99999985278888
No 8
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=1.00 E-value=1 Score=68.64 Aligned_cols=73 Identities=18% Similarity=0.144 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 699999999994799934799999999999812136665689765102--301999999872099961289999999998
Q 003521 44 LKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFL--RPHYGTLKAYYETMPDSDLKKYMADILSVL 121 (813)
Q Consensus 44 lk~~l~~~v~~l~e~d~~l~~~AL~~L~~~i~~~tss~tsvpkplk~l--~~~~~~l~~~ye~~~~~~~k~~~AdilS~l 121 (813)
+++.++.+++.|..+|++.+..|+..|+.++.... +.|++.+ ....+.|..+..+..+++.+..++..+..+
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~------~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l 158 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREH------RPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNI 158 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSS------SCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC------CCCHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 57789999998759999999999999999847899------965999988888999999847999779999999999999
Q ss_pred H
Q ss_conf 7
Q 003521 122 A 122 (813)
Q Consensus 122 ~ 122 (813)
+
T Consensus 159 ~ 159 (530)
T 1wa5_B 159 A 159 (530)
T ss_dssp T
T ss_pred H
T ss_conf 6
No 9
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=1.00 E-value=1 Score=68.03 Aligned_cols=75 Identities=19% Similarity=0.182 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 30648899988763034012779999999996119966983889998401268984469999987531986498999999
Q 003521 629 AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVI 708 (813)
Q Consensus 629 ~vrr~AvlglalI~~~~~~g~e~~~~~l~~L~~~~~~~VR~g~~lALGL~~agt~~~~vid~L~~l~~D~d~~Vr~~Aii 708 (813)
.||..|+.++|-+. ++ + +...+..++.+.++.||..+..+||-+ +..++++.|..+..|.+..||..|+.
T Consensus 122 ~vr~~a~~aL~~~~--~~---~-~~~~L~~~l~d~~~~vr~~A~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~A~~ 191 (201)
T 3ltj_A 122 FVRIAAAFALGEIG--DE---R-AVEPLIKALKDEDGWVRQSAADALGEI----GGERVRAAMEKLAETGTGFARKVAVN 191 (201)
T ss_dssp HHHHHHHHHHHHHT--CG---G-GHHHHHHHTTCSSHHHHHHHHHHHHHH----CSHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC--CH---H-HHHHHHHHHCCCCHHHHHHHHHHHHHH----CCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999999858--87---8-999999997599889999999999986----86468999999883898789999999
Q ss_pred HHHHH
Q ss_conf 99988
Q 003521 709 SLGLI 713 (813)
Q Consensus 709 AlGlV 713 (813)
+++-+
T Consensus 192 aL~~l 196 (201)
T 3ltj_A 192 YLETH 196 (201)
T ss_dssp HHHHC
T ss_pred HHHHH
T ss_conf 99987
No 10
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=1.00 E-value=1 Score=67.33 Aligned_cols=242 Identities=14% Similarity=0.048 Sum_probs=123.3
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf 85744203798146899999998761699899035999998740698879999999999898435988779999987604
Q 003521 431 AQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILN 510 (813)
Q Consensus 431 ~~l~~yL~s~~~~~k~GAllaLGli~~g~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~~e~i~e~L~~~l~ 510 (813)
..+..++.++++.+|.-|+.+++.+......-..+....+...+.+++..+|.-|+--|.-..--+.-+++.+.|...+.
T Consensus 316 ~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~ 395 (618)
T 1w63_A 316 NILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLD 395 (618)
T ss_dssp HHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99999974799743799999999998608899999999999871599966999999999997164119999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 8998436888999999667607--99989999999998505855558524778899999863389235999999864212
Q 003521 511 DAKSPLDVIAFSAISLGLIYVG--SCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFN 588 (813)
Q Consensus 511 d~~~~~e~~~~AalaLGLi~~G--s~~~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~lG~~e~a~~lle~L~~~~ 588 (813)
+. +.++...+..++|.+..- ..-...++.+++.+....+. -+.+.+..+.+.+..
T Consensus 396 ~~--d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~-------------------v~~~~~~~l~~ii~~-- 452 (618)
T 1w63_A 396 SC--EPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSY-------------------VRDDAVPNLIQLITN-- 452 (618)
T ss_dssp HC--CHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGG-------------------SCSSHHHHHHHHHHH--
T ss_pred HC--CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCH-------------------HHHHHHHHHHHHHHC--
T ss_conf 28--8999999999999999985750889999999999863531-------------------479999999999956--
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC--------------CCHHHHHHHHH
Q ss_conf 4445456689999998247989999999831001678894306488999887630--------------34012779999
Q 003521 589 EKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAM--------------AEELGLEMAIR 654 (813)
Q Consensus 589 ~~~~r~~~~~~~~layaGTgn~~~iq~LL~~~~~~~~d~~~vrr~AvlglalI~~--------------~~~~g~e~~~~ 654 (813)
.|-.+ ..+++.|..+..++... +...+.++--+|-.+- -+| ..+++
T Consensus 453 ~p~l~----------------~~~v~~L~~~l~~~~~~-~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~---~~~~~ 512 (618)
T 1w63_A 453 SVEMH----------------AYTVQRLYKAILGDYSQ-QPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTE---DEVLD 512 (618)
T ss_dssp SCSTH----------------HHHHHHHHHHHHHCCSC-SHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCH---HHHHH
T ss_pred CHHHH----------------HHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH---HHHHH
T ss_conf 85689----------------99999999997452332-899999999982358775146544212457788---99999
Q ss_pred HHHHHHH--CCCHHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9999961--19966983889998401268984--4699999875319864989999999998807
Q 003521 655 SLEHLLQ--YGEQNIRRAVPLALGLLCISNPK--VNVMDTLSRLSHDTDSEVAMAAVISLGLIGS 715 (813)
Q Consensus 655 ~l~~L~~--~~~~~VR~g~~lALGL~~agt~~--~~vid~L~~l~~D~d~~Vr~~AiiAlGlV~a 715 (813)
.+..+.. ..++.+|..+.-|++=++.-.|. ..+...|..+..|.|.+||+.|.+.+.++..
T Consensus 513 ~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 513 ILESVLISNMSTSVTRGYALTAIMKLSTRFTCTVNRIKKVVSIYGSSIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99999744479799999999999999985844699999999983589998999999999999807
Done!