Your job contains 1 sequence.
>003522
MLSILEVRYQLIMFILVSDDCTKFPFCIKNKSNCICKYIANIYIYTYTLLLGLWLTLVYF
LKICSLLHQRYKDFSPCLIDGLLKVFFPGKSGEDLDADRNLKAMKKRSTLKLLLELYFIG
IIEDSSIFINIIKDLTSIEHLKDRDTTQTNLTLLASFARQGRIFLGLPLSGPGQEIYEEF
FKGLNITADQKKIFKKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEENSSS
YEKLRKSYDHLYRNVSSLAEALDMQPPVMPEDVHTTRVTSGEDASPASGKDSSVPEPVWD
DEETRAFYECLPDLRAFVPAVLLGEAEHKANEPSVKPLEQPTDPASEPDQGQLAAQDTAE
VSADLGASPEGKSVEKGKDKEEKEKEKAKDPDKEKGKGKDKEEKDKEKAKDPDKEKGKEK
DTERKVETEKEKLKGVEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKRLVRAL
FNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIRNIR
FIGELCKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETSIRMANML
EILMRLKNVKNLDPRHVTLVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFSDLDKSSI
EHVLRQLRKLPWSDCESYLLKCFMKVHKGKYGQIHLIASLTAGLSRYHDEFAVAVVDEVL
EEIRLGLELNDYGMQQRRLAHMRFLGELYNYEHVDSSVIFDTLYLILVFGHGTAETYWTH
QKIVSGSGWLLLFLRLVVTTLTEALPRGNLIDF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 003522
(813 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2056038 - symbol:AT2G39260 "AT2G39260" species... 1599 1.1e-275 2
UNIPROTKB|E2RL95 - symbol:UPF2 "Uncharacterized protein" ... 949 3.8e-127 2
UNIPROTKB|E2RLB0 - symbol:UPF2 "Uncharacterized protein" ... 949 3.8e-127 2
UNIPROTKB|F1MQ83 - symbol:UPF2 "Uncharacterized protein" ... 949 1.0e-126 2
UNIPROTKB|E1C0M6 - symbol:UPF2 "Uncharacterized protein" ... 950 2.1e-126 2
UNIPROTKB|Q9HAU5 - symbol:UPF2 "Regulator of nonsense tra... 949 3.4e-126 2
ZFIN|ZDB-GENE-090715-1 - symbol:upf2 "UPF2 regulator of n... 948 3.4e-126 2
ASPGD|ASPL0000002256 - symbol:nmdA species:162425 "Emeric... 804 2.4e-95 2
FB|FBgn0029992 - symbol:Upf2 "Upf2" species:7227 "Drosoph... 712 7.8e-86 2
DICTYBASE|DDB_G0281623 - symbol:upf2 "eukaryotic initiati... 609 3.9e-74 2
UNIPROTKB|F1RUP4 - symbol:LOC100621126 "Uncharacterized p... 697 1.0e-68 1
POMBASE|SPAC19A8.08 - symbol:upf2 "nonsense-mediated deca... 531 6.6e-57 3
SGD|S000001119 - symbol:NMD2 "Protein involved in the non... 471 2.4e-49 2
WB|WBGene00004881 - symbol:smg-3 species:6239 "Caenorhabd... 398 2.9e-44 2
CGD|CAL0002815 - symbol:orf19.864 species:5476 "Candida a... 389 5.1e-35 2
RGD|1309178 - symbol:Upf2 "UPF2 regulator of nonsense tra... 318 8.4e-26 1
>TAIR|locus:2056038 [details] [associations]
symbol:AT2G39260 "AT2G39260" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006412 "translation" evidence=ISS]
[GO:0000278 "mitotic cell cycle" evidence=RCA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=RCA]
[GO:0006396 "RNA processing" evidence=RCA] [GO:0009630
"gravitropism" evidence=RCA] [GO:0019344 "cysteine biosynthetic
process" evidence=RCA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 EMBL:CP002685
SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0003723 GO:GO:0016070
Gene3D:1.25.40.180 KO:K14327 InterPro:IPR007193 Pfam:PF04050
OMA:YLEQMMR IPI:IPI00516215 RefSeq:NP_181459.4 UniGene:At.12815
ProteinModelPortal:F4IUX6 SMR:F4IUX6 PRIDE:F4IUX6
EnsemblPlants:AT2G39260.1 GeneID:818511 KEGG:ath:AT2G39260
Uniprot:F4IUX6
Length = 1181
Score = 1599 (567.9 bits), Expect = 1.1e-275, Sum P(2) = 1.1e-275
Identities = 297/354 (83%), Positives = 333/354 (94%)
Query: 422 TERKVETEKEKLKGVEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKRLVRALF 481
+E+K+E EKEK K ++ N + LLQRLPGCVSRDLIDQLTVE+CYLNSK+NRK+LV+ALF
Sbjct: 448 SEKKMEHEKEKGKSLDVANFERLLQRLPGCVSRDLIDQLTVEYCYLNSKTNRKKLVKALF 507
Query: 482 NVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIRNIRF 541
NVPRTSLELL YYSRMVATL++CMKD+ SML+QMLE+EFN L++KKDQMNIETKIRNIRF
Sbjct: 508 NVPRTSLELLAYYSRMVATLASCMKDIPSMLVQMLEDEFNSLVHKKDQMNIETKIRNIRF 567
Query: 542 IGELCKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETSIRMANMLE 601
IGELCKFKI PAGLVFSCLKACLD+FTHHNIDVACNLLETCGRFLYRSPET++RM NML+
Sbjct: 568 IGELCKFKIVPAGLVFSCLKACLDEFTHHNIDVACNLLETCGRFLYRSPETTLRMTNMLD 627
Query: 602 ILMRLKNVKNLDPRHVTLVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFSDLDKSSIE 661
ILMRLKNVKNLDPR TLVENAYYLCKPPERSAR+SKVRPPLHQY+RKLLFSDLDK SI
Sbjct: 628 ILMRLKNVKNLDPRQSTLVENAYYLCKPPERSARISKVRPPLHQYVRKLLFSDLDKDSIA 687
Query: 662 HVLRQLRKLPWSDCESYLLKCFMKVHKGKYGQIHLIASLTAGLSRYHDEFAVAVVDEVLE 721
+VL+QLRKLPWS+CE Y+LKCFMKVHKGKYGQIHLIASLT+GLSR+HDEF VAVVDEVLE
Sbjct: 688 NVLKQLRKLPWSECEQYILKCFMKVHKGKYGQIHLIASLTSGLSRHHDEFVVAVVDEVLE 747
Query: 722 EIRLGLELNDYGMQQRRLAHMRFLGELYNYEHVDSSVIFDTLYLILVFGHGTAE 775
EIR+GLELN+YG QQ+RLAHMRFLGELYNYEHVDSSVIF+TLYL L++GH T+E
Sbjct: 748 EIRVGLELNEYGAQQKRLAHMRFLGELYNYEHVDSSVIFETLYLTLLYGHDTSE 801
Score = 1075 (383.5 bits), Expect = 1.1e-275, Sum P(2) = 1.1e-275
Identities = 217/313 (69%), Positives = 256/313 (81%)
Query: 62 KICSLLHQRYKDFSPCLIDGLLKVFFPGKSGEDLDADRNLKAMKKRSTLKLLLELYXXXX 121
+ICSLLHQRYK+FS L GLLKVFFPGKS EDL+AD+N KAMKKRSTLKLLLELY
Sbjct: 113 QICSLLHQRYKEFSASLTQGLLKVFFPGKSAEDLEADKNSKAMKKRSTLKLLLELYYVGV 172
Query: 122 XXXXXXXXXXXKDLTSIEHLKDRDTTQTNLTLLASFARQGRIFLGLPLSGPGQEIYEEFF 181
KDLTS+E LKDRDTTQTNLTLL SFARQGRIFLGLP+SG Q+ E+FF
Sbjct: 173 IEDSNIFINIIKDLTSVEQLKDRDTTQTNLTLLTSFARQGRIFLGLPISG--QD--EDFF 228
Query: 182 KGLNITADQKKIFKKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEENSSSY 241
KGL++TADQKK FKKAF+TYY+A+ +LLQ+EH L QME ENAK++NAKGELSE+++SSY
Sbjct: 229 KGLDVTADQKKSFKKAFNTYYDALADLLQSEHKLLLQMEKENAKLVNAKGELSEDSASSY 288
Query: 242 EKLRKSYDHLYRNVSSLAEALDMQPPVMPEDVHTTRVTSGEDASPASG-KDSSVPEPVWD 300
EKLRKSYDHLYRN+SSLAEALDMQPPVMPED TTR+T+G++ASP+ KD+SVPEP+WD
Sbjct: 289 EKLRKSYDHLYRNISSLAEALDMQPPVMPED-GTTRLTAGDEASPSGTVKDTSVPEPIWD 347
Query: 301 DEETRAFYECLPDLRAFVPAVLLGEAEHKANEPSVKPLEQPTDPASEPDQGQLAAQDTAE 360
DE+T+ FYECLPDLRAFVPAVLLGEAE K+NE S K E+ ++ +SE + Q +DT E
Sbjct: 348 DEDTKTFYECLPDLRAFVPAVLLGEAEPKSNEQSAKAKEKLSESSSEVVENQQTTEDTTE 407
Query: 361 VSADLGASPEGKS 373
VSAD AS + +S
Sbjct: 408 VSAD-SASMDDRS 419
Score = 53 (23.7 bits), Expect = 3.0e-112, Sum P(2) = 3.0e-112
Identities = 32/144 (22%), Positives = 58/144 (40%)
Query: 533 ETKIRNIRFIGELCKFKIAPAGLVFSCLKACL----DDFTHHNID---------VACNLL 579
+ ++ ++RF+GEL ++ + ++F L L D +D + LL
Sbjct: 762 QKRLAHMRFLGELYNYEHVDSSVIFETLYLTLLYGHDTSEQEVLDPPEDFFRVRMVIILL 821
Query: 580 ETCGRFLYRSPETSIRMANMLEILMRLKNVKNLDPRHVTL-VENAYYLCKPP-ERSARVS 637
ETCG + R R+ L R K P + +++ + +P R + +
Sbjct: 822 ETCGHYFDRGSSKK-RLDQFLIHFQRYILSKGHLPLDIEFDLQDLFANLRPNMTRYSTID 880
Query: 638 KVRPPLHQYIRKLLFSDLDKSSIE 661
+V + Q + S DK SIE
Sbjct: 881 EVNAAILQLEEREHASSGDKVSIE 904
Score = 41 (19.5 bits), Expect = 2.4e-166, Sum P(2) = 2.4e-166
Identities = 16/74 (21%), Positives = 28/74 (37%)
Query: 210 QAEHTSLRQMENENAKILNAKGELSEENSSSYEKLRKSYDHLYRNVSSLAEALDMQPPVM 269
+AE S Q K+ + E+ E ++ + S D + S AE + V
Sbjct: 372 EAEPKSNEQSAKAKEKLSESSSEVVENQQTTEDTTEVSADSASMDDRSNAEQPKEKEEVE 431
Query: 270 PEDVHTTRVTSGED 283
E T+ G++
Sbjct: 432 KEKAKDTKKEKGKE 445
>UNIPROTKB|E2RL95 [details] [associations]
symbol:UPF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 SUPFAM:SSF48371
GO:GO:0003677 GO:GO:0003723 GO:GO:0016070 Gene3D:1.25.40.180
InterPro:IPR007193 Pfam:PF04050 GeneTree:ENSGT00530000064318
EMBL:AAEX03001281 Ensembl:ENSCAFT00000007814 Uniprot:E2RL95
Length = 1271
Score = 949 (339.1 bits), Expect = 3.8e-127, Sum P(2) = 3.8e-127
Identities = 186/351 (52%), Positives = 245/351 (69%)
Query: 427 ETEKEKLKGVEGTNL----DALLQRLPGCVSRDLIDQLTVEFCY-LNSKSNRKRLVRALF 481
E E+E + G++L DA LQ+LP CV+RDLID+ ++FC +N+K+NRK+LVRALF
Sbjct: 549 EQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANRKKLVRALF 608
Query: 482 NVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIRNIRF 541
VPR L+LLP+Y+R+VATL CM DV+ L ML +F F + KKDQ+NIETK + +RF
Sbjct: 609 IVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRF 668
Query: 542 IGELCKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETSIRMANMLE 601
IGEL KFK+ CLK L DF+HH+I++AC LLETCGRFL+RSPE+ +R + +LE
Sbjct: 669 IGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESHLRTSVLLE 728
Query: 602 ILMRLKNVKNLDPRHVTLVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFSDLDKSSIE 661
+MR K +LD R+VT+VENAYY C PP V K RPPL +Y+RKLL+ DL K + E
Sbjct: 729 QMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTE 788
Query: 662 HVLRQLRKLPWSDCE--SYLLKCFMKVHKGKYGQIHLIASLTAGLSRYHDEFAVAVVDEV 719
VLRQ+RKLPW D E Y++ C + + KY IH +A+L AGL Y ++ + VVD V
Sbjct: 789 KVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVGIHVVDGV 848
Query: 720 LEEIRLGLELNDYGMQQRRLAHMRFLGELYNYEHVDSSVIFDTLYLILVFG 770
LE+IRLG+E+N QRR++ +FLGELYNY V+S+VIF TLY FG
Sbjct: 849 LEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFG 899
Score = 320 (117.7 bits), Expect = 3.8e-127, Sum P(2) = 3.8e-127
Identities = 94/315 (29%), Positives = 156/315 (49%)
Query: 63 ICSLLHQRYKDFSPCLIDGLLKVFFPGKSGEDLDADRNLKAMKKRSTLKLLLELYXXXXX 122
+CSL HQRY DF+P L+ + K F + E N+ K R+ L+ + EL
Sbjct: 224 LCSLFHQRYADFAPSLLQ-VWKKHFEARKEEKTP---NIT--KLRTDLRFIAELTIVGIF 277
Query: 123 XXXXXXXXXXKDLTSIEHLKDRDTTQTNLTLLASFARQ-GRIFLGL-P--LSGPGQEIYE 178
+ L +I + DR++ T+++++ SF R G GL P + ++
Sbjct: 278 TDKEGLSLIYEQLKNIINA-DRES-HTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNL 335
Query: 179 EFFKGLNITADQKKIFKKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEENS 238
F I+ ++++ F+ Y+ ++ + L+ +H L+ E +N +IL++KGELSE+
Sbjct: 336 SFPPSEIISPEKQQPFQNLLKEYFTSLTKHLKRDHRELQNTERQNRRILHSKGELSEDRH 395
Query: 239 SSYEKLRKSYDHLYRNVSSLAEALDMQPPVMPEDVHTTRVTS-GEDA-SPASGKDSSVPE 296
YE+ SY L N SLA+ LD P +P+D T G D +P + +
Sbjct: 396 KQYEEFAMSYQKLLANSQSLADLLDENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEG 455
Query: 297 PVWDDEETRAFYECLPDLRAFVPAVLLGEAEHK-----ANEPSVKPLEQPTD--PASEPD 349
+W+DE+ R FYE L DL+AFVPA+L + E +N+ K ++P D S PD
Sbjct: 456 GIWEDEDARNFYENLIDLKAFVPAILFKDNEKSCQNKDSNKDDSKEAKEPKDNKEVSNPD 515
Query: 350 QGQLAAQDTAEVSAD 364
+L ++ E++ D
Sbjct: 516 DLELELENL-EINDD 529
Score = 69 (29.3 bits), Expect = 8.5e-27, Sum P(2) = 8.5e-27
Identities = 25/123 (20%), Positives = 55/123 (44%)
Query: 480 LFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIRNI 539
++NV S+ + + ++A L +DV ++ + E+ + + +I +
Sbjct: 815 IWNVKYNSIHCV---ANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSA 871
Query: 540 RFIGELCKFKIAPAGLVFSCL-------------KACLDDFTH-HNIDVACNLLETCGRF 585
+F+GEL +++ + ++F L + LD H I + C +L+TCG++
Sbjct: 872 KFLGELYNYRMVESAVIFRTLYSFTSFGVNSDGSPSSLDPPEHLFRIRLVCTILDTCGQY 931
Query: 586 LYR 588
R
Sbjct: 932 FDR 934
>UNIPROTKB|E2RLB0 [details] [associations]
symbol:UPF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 SUPFAM:SSF48371
GO:GO:0003677 GO:GO:0003723 GO:GO:0016070 Gene3D:1.25.40.180
KO:K14327 InterPro:IPR007193 Pfam:PF04050
GeneTree:ENSGT00530000064318 CTD:26019 OMA:YLEQMMR
EMBL:AAEX03001281 RefSeq:XP_003433764.1 RefSeq:XP_544258.3
Ensembl:ENSCAFT00000007809 GeneID:487130 KEGG:cfa:487130
Uniprot:E2RLB0
Length = 1271
Score = 949 (339.1 bits), Expect = 3.8e-127, Sum P(2) = 3.8e-127
Identities = 186/351 (52%), Positives = 245/351 (69%)
Query: 427 ETEKEKLKGVEGTNL----DALLQRLPGCVSRDLIDQLTVEFCY-LNSKSNRKRLVRALF 481
E E+E + G++L DA LQ+LP CV+RDLID+ ++FC +N+K+NRK+LVRALF
Sbjct: 549 EQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANRKKLVRALF 608
Query: 482 NVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIRNIRF 541
VPR L+LLP+Y+R+VATL CM DV+ L ML +F F + KKDQ+NIETK + +RF
Sbjct: 609 IVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRF 668
Query: 542 IGELCKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETSIRMANMLE 601
IGEL KFK+ CLK L DF+HH+I++AC LLETCGRFL+RSPE+ +R + +LE
Sbjct: 669 IGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESHLRTSVLLE 728
Query: 602 ILMRLKNVKNLDPRHVTLVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFSDLDKSSIE 661
+MR K +LD R+VT+VENAYY C PP V K RPPL +Y+RKLL+ DL K + E
Sbjct: 729 QMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTE 788
Query: 662 HVLRQLRKLPWSDCE--SYLLKCFMKVHKGKYGQIHLIASLTAGLSRYHDEFAVAVVDEV 719
VLRQ+RKLPW D E Y++ C + + KY IH +A+L AGL Y ++ + VVD V
Sbjct: 789 KVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVGIHVVDGV 848
Query: 720 LEEIRLGLELNDYGMQQRRLAHMRFLGELYNYEHVDSSVIFDTLYLILVFG 770
LE+IRLG+E+N QRR++ +FLGELYNY V+S+VIF TLY FG
Sbjct: 849 LEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFG 899
Score = 320 (117.7 bits), Expect = 3.8e-127, Sum P(2) = 3.8e-127
Identities = 94/315 (29%), Positives = 156/315 (49%)
Query: 63 ICSLLHQRYKDFSPCLIDGLLKVFFPGKSGEDLDADRNLKAMKKRSTLKLLLELYXXXXX 122
+CSL HQRY DF+P L+ + K F + E N+ K R+ L+ + EL
Sbjct: 224 LCSLFHQRYADFAPSLLQ-VWKKHFEARKEEKTP---NIT--KLRTDLRFIAELTIVGIF 277
Query: 123 XXXXXXXXXXKDLTSIEHLKDRDTTQTNLTLLASFARQ-GRIFLGL-P--LSGPGQEIYE 178
+ L +I + DR++ T+++++ SF R G GL P + ++
Sbjct: 278 TDKEGLSLIYEQLKNIINA-DRES-HTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNL 335
Query: 179 EFFKGLNITADQKKIFKKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEENS 238
F I+ ++++ F+ Y+ ++ + L+ +H L+ E +N +IL++KGELSE+
Sbjct: 336 SFPPSEIISPEKQQPFQNLLKEYFTSLTKHLKRDHRELQNTERQNRRILHSKGELSEDRH 395
Query: 239 SSYEKLRKSYDHLYRNVSSLAEALDMQPPVMPEDVHTTRVTS-GEDA-SPASGKDSSVPE 296
YE+ SY L N SLA+ LD P +P+D T G D +P + +
Sbjct: 396 KQYEEFAMSYQKLLANSQSLADLLDENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEG 455
Query: 297 PVWDDEETRAFYECLPDLRAFVPAVLLGEAEHK-----ANEPSVKPLEQPTD--PASEPD 349
+W+DE+ R FYE L DL+AFVPA+L + E +N+ K ++P D S PD
Sbjct: 456 GIWEDEDARNFYENLIDLKAFVPAILFKDNEKSCQNKDSNKDDSKEAKEPKDNKEVSNPD 515
Query: 350 QGQLAAQDTAEVSAD 364
+L ++ E++ D
Sbjct: 516 DLELELENL-EINDD 529
Score = 69 (29.3 bits), Expect = 8.5e-27, Sum P(2) = 8.5e-27
Identities = 25/123 (20%), Positives = 55/123 (44%)
Query: 480 LFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIRNI 539
++NV S+ + + ++A L +DV ++ + E+ + + +I +
Sbjct: 815 IWNVKYNSIHCV---ANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSA 871
Query: 540 RFIGELCKFKIAPAGLVFSCL-------------KACLDDFTH-HNIDVACNLLETCGRF 585
+F+GEL +++ + ++F L + LD H I + C +L+TCG++
Sbjct: 872 KFLGELYNYRMVESAVIFRTLYSFTSFGVNSDGSPSSLDPPEHLFRIRLVCTILDTCGQY 931
Query: 586 LYR 588
R
Sbjct: 932 FDR 934
>UNIPROTKB|F1MQ83 [details] [associations]
symbol:UPF2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0035145 "exon-exon junction complex" evidence=IEA]
[GO:0031100 "organ regeneration" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 GO:GO:0005737
SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0031100 GO:GO:0001889
GO:GO:0003723 GO:GO:0016070 Gene3D:1.25.40.180 GO:GO:0035145
InterPro:IPR007193 Pfam:PF04050 GeneTree:ENSGT00530000064318
OMA:YLEQMMR EMBL:DAAA02035238 IPI:IPI00712277
Ensembl:ENSBTAT00000061493 Uniprot:F1MQ83
Length = 1273
Score = 949 (339.1 bits), Expect = 1.0e-126, Sum P(2) = 1.0e-126
Identities = 186/351 (52%), Positives = 245/351 (69%)
Query: 427 ETEKEKLKGVEGTNL----DALLQRLPGCVSRDLIDQLTVEFCY-LNSKSNRKRLVRALF 481
E E+E + G++L DA LQ+LP CV+RDLID+ ++FC +N+K+NRK+LVRALF
Sbjct: 549 EQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANRKKLVRALF 608
Query: 482 NVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIRNIRF 541
VPR L+LLP+Y+R+VATL CM DV+ L ML +F F + KKDQ+NIETK + +RF
Sbjct: 609 IVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRF 668
Query: 542 IGELCKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETSIRMANMLE 601
IGEL KFK+ CLK L DF+HH+I++AC LLETCGRFL+RSPE+ +R + +LE
Sbjct: 669 IGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESHLRTSVLLE 728
Query: 602 ILMRLKNVKNLDPRHVTLVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFSDLDKSSIE 661
+MR K +LD R+VT+VENAYY C PP V K RPPL +Y+RKLL+ DL K + E
Sbjct: 729 QMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTE 788
Query: 662 HVLRQLRKLPWSDCE--SYLLKCFMKVHKGKYGQIHLIASLTAGLSRYHDEFAVAVVDEV 719
VLRQ+RKLPW D E Y++ C + + KY IH +A+L AGL Y ++ + VVD V
Sbjct: 789 KVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVGIHVVDGV 848
Query: 720 LEEIRLGLELNDYGMQQRRLAHMRFLGELYNYEHVDSSVIFDTLYLILVFG 770
LE+IRLG+E+N QRR++ +FLGELYNY V+S+VIF TLY FG
Sbjct: 849 LEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFG 899
Score = 316 (116.3 bits), Expect = 1.0e-126, Sum P(2) = 1.0e-126
Identities = 93/310 (30%), Positives = 154/310 (49%)
Query: 63 ICSLLHQRYKDFSPCLIDGLLKVFFPGKSGEDLDADRNLKAMKKRSTLKLLLELYXXXXX 122
+CSL HQRY DF+P L+ + K F + E N+ K R+ L+ + EL
Sbjct: 224 LCSLFHQRYADFAPSLLQ-VWKKHFEARKEEKTP---NIT--KLRTDLRFIAELTIVGIF 277
Query: 123 XXXXXXXXXXKDLTSIEHLKDRDTTQTNLTLLASFARQ-GRIFLGL-P--LSGPGQEIYE 178
+ L +I + DR++ T+++++ SF R G GL P + ++
Sbjct: 278 TDKEGLSLIYEQLKNIINA-DRES-HTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNL 335
Query: 179 EFFKGLNITADQKKIFKKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEENS 238
F I+ ++++ F+ Y+ ++ + L+ +H L+ E +N +IL++KGELSE+
Sbjct: 336 SFPPSEIISPEKQQPFQNLLKEYFTSLTKHLKRDHRELQNTERQNRRILHSKGELSEDRH 395
Query: 239 SSYEKLRKSYDHLYRNVSSLAEALDMQPPVMPEDVHTTRVTS-GEDA-SPASGKDSSVPE 296
YE+ SY L N SLA+ LD P +P+D T G D +P + +
Sbjct: 396 KQYEEFAMSYQKLLANSQSLADLLDENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEG 455
Query: 297 PVWDDEETRAFYECLPDLRAFVPAVLLGEAEHKA-NEPSVKPLEQPTDPASEP-DQGQLA 354
+W+DE+ R FYE L DL+AFVPA+L + E N+ S K + T EP D +++
Sbjct: 456 GIWEDEDARNFYENLIDLKAFVPAILFKDNEKSCQNKESSKDDSKET---KEPKDNKEVS 512
Query: 355 AQDTAEVSAD 364
+ D E+ +
Sbjct: 513 SPDDLELELE 522
Score = 69 (29.3 bits), Expect = 2.4e-26, Sum P(2) = 2.4e-26
Identities = 25/123 (20%), Positives = 55/123 (44%)
Query: 480 LFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIRNI 539
++NV S+ + + ++A L +DV ++ + E+ + + +I +
Sbjct: 815 IWNVKYNSIHCV---ANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSA 871
Query: 540 RFIGELCKFKIAPAGLVFSCL-------------KACLDDFTH-HNIDVACNLLETCGRF 585
+F+GEL +++ + ++F L + LD H I + C +L+TCG++
Sbjct: 872 KFLGELYNYRMVESAVIFRTLYSFTSFGVNSDGSPSSLDPPEHLFRIRLVCTILDTCGQY 931
Query: 586 LYR 588
R
Sbjct: 932 FDR 934
Score = 41 (19.5 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 487 SLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIRNI 539
+LELL ++ +L ++ V + + L + L+N KD + T+ N+
Sbjct: 978 TLELLRPKIKLCNSLEESIRQVHDLEREFLIKLVQGLVNDKDSKDSMTEGENL 1030
>UNIPROTKB|E1C0M6 [details] [associations]
symbol:UPF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0031100 "organ
regeneration" evidence=IEA] [GO:0035145 "exon-exon junction
complex" evidence=IEA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 GO:GO:0005737
SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0003723 GO:GO:0016070
Gene3D:1.25.40.180 GO:GO:0035145 InterPro:IPR007193 Pfam:PF04050
GeneTree:ENSGT00530000064318 OMA:YLEQMMR EMBL:AADN02039371
EMBL:AADN02039372 EMBL:AADN02039373 EMBL:AADN02039374
EMBL:AADN02039375 EMBL:AADN02039376 EMBL:AADN02039377
EMBL:AADN02039378 EMBL:AADN02039379 EMBL:AADN02039380
EMBL:AADN02039381 IPI:IPI00810813 Ensembl:ENSGALT00000010817
Uniprot:E1C0M6
Length = 1263
Score = 950 (339.5 bits), Expect = 2.1e-126, Sum P(2) = 2.1e-126
Identities = 186/351 (52%), Positives = 246/351 (70%)
Query: 427 ETEKEKLKGVEGTNL----DALLQRLPGCVSRDLIDQLTVEFCY-LNSKSNRKRLVRALF 481
E E+E + G++L DA LQ+LP CV+RDLID+ ++FC +N+K+NR++LVRALF
Sbjct: 550 EQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANRRKLVRALF 609
Query: 482 NVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIRNIRF 541
VPR L+LLP+Y+R+VATL CM DV+ L ML+ +F F + KKDQ+NIETK + +RF
Sbjct: 610 IVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHVRKKDQINIETKNKTVRF 669
Query: 542 IGELCKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETSIRMANMLE 601
IGEL KFK+ CLK L DF+HH+I++AC LLETCGRFL+RSPE+ +R + +LE
Sbjct: 670 IGELTKFKMFSKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESHLRTSVLLE 729
Query: 602 ILMRLKNVKNLDPRHVTLVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFSDLDKSSIE 661
+MR K +LD R+VT+VENAYY C PP V K RPPL +YIRKLL+ DL K + E
Sbjct: 730 QMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLYKDLSKVTTE 789
Query: 662 HVLRQLRKLPWSDCE--SYLLKCFMKVHKGKYGQIHLIASLTAGLSRYHDEFAVAVVDEV 719
VLRQ+RKLPW D E Y++ C + + KY IH +A+L AGL Y ++ + VVD V
Sbjct: 790 KVLRQMRKLPWQDTEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVGIHVVDGV 849
Query: 720 LEEIRLGLELNDYGMQQRRLAHMRFLGELYNYEHVDSSVIFDTLYLILVFG 770
LE+IRLG+E+N QRR++ +FLGELYNY V+S+VIF TLY FG
Sbjct: 850 LEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFG 900
Score = 312 (114.9 bits), Expect = 2.1e-126, Sum P(2) = 2.1e-126
Identities = 91/310 (29%), Positives = 152/310 (49%)
Query: 63 ICSLLHQRYKDFSPCLIDGLLKVFFPGKSGEDLDADRNLKAMKKRSTLKLLLELYXXXXX 122
+CSL HQRY DF+P L+ K F K ++ K R+ L+ + EL
Sbjct: 224 LCSLFHQRYADFAPSLLQAWKKHFEARKE------EKTPNITKLRTDLRFIAELTIVGIF 277
Query: 123 XXXXXXXXXXKDLTSIEHLKDRDTTQTNLTLLASFARQ-GRIFLGLPLSGPGQEIYEEF- 180
+ L +I + DR++ T+++++ SF R G GL + + + E+F
Sbjct: 278 TDKEGLSLIYEQLKNIINA-DRES-HTHVSVVISFCRHCGDDIAGL-VPRKVKTVAEKFN 334
Query: 181 --FKGLNITADQKKI-FKKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEEN 237
F I + +K+ F+ Y+ ++ + L+ +H L+ +E +N +IL++KGELSE+
Sbjct: 335 LSFPPSEIISPEKQQPFQNLLKEYFTSLTKHLKRDHRELQNIERQNRRILHSKGELSEDR 394
Query: 238 SSSYEKLRKSYDHLYRNVSSLAEALDMQPPVMPEDVHTTRVTS-GEDA-SPASGKDSSVP 295
YE+ SY L N SLA+ LD P +P+D T G D +P + +
Sbjct: 395 HKQYEEFAMSYQKLLANSQSLADILDENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLE 454
Query: 296 EPVWDDEETRAFYECLPDLRAFVPAVLLGEAEHKANEPSVKPLEQPTDPASEPDQGQLAA 355
+W+DE+ R FYE L DL+AFVPA+L + E K ++ ++ D D + AA
Sbjct: 455 GGIWEDEDARNFYENLIDLKAFVPAILFKDNE-KCSQSKDASKDESRDSKDAKDNKE-AA 512
Query: 356 QDTAEVSADL 365
+ ++ +L
Sbjct: 513 PGSEDLELEL 522
Score = 67 (28.6 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 25/123 (20%), Positives = 55/123 (44%)
Query: 480 LFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIRNI 539
++NV S+ + + ++A L +DV ++ + E+ + + +I +
Sbjct: 816 IWNVKYNSIHCV---ANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSA 872
Query: 540 RFIGELCKFKIAPAGLVFSCLKAC-------------LDDFTH-HNIDVACNLLETCGRF 585
+F+GEL +++ + ++F L + LD H I + C +L+TCG++
Sbjct: 873 KFLGELYNYRMVESAVIFRTLYSFTSFGVNPDGSPSPLDPPEHLFRIRLVCTILDTCGQY 932
Query: 586 LYR 588
R
Sbjct: 933 FDR 935
Score = 47 (21.6 bits), Expect = 2.0e-98, Sum P(2) = 2.0e-98
Identities = 17/71 (23%), Positives = 30/71 (42%)
Query: 170 SGPGQEIYEEFFKGLNITADQKKIFKKAFHTYYNAVQELLQAEHTSL---RQMENENAKI 226
+ P E FF L+ + + F K T ++ L + SL + + A I
Sbjct: 149 NAPDNRPEENFFSRLDSSLKKNTAFVKKLKTITEQQRDSLSHDFNSLNLSKYIAEAVASI 208
Query: 227 LNAKGELSEEN 237
+ AK ++S+ N
Sbjct: 209 VEAKLKISDVN 219
>UNIPROTKB|Q9HAU5 [details] [associations]
symbol:UPF2 "Regulator of nonsense transcripts 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001889 "liver
development" evidence=IEA] [GO:0031100 "organ regeneration"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0035145 "exon-exon junction
complex" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005829 "cytosol" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
Pfam:PF02854 SMART:SM00543 EMBL:AF318574 EMBL:AY013249
GO:GO:0005829 GO:GO:0048471 GO:GO:0010467 SUPFAM:SSF48371
GO:GO:0000184 GO:GO:0003677 GO:GO:0031100 GO:GO:0001889
GO:GO:0003723 EMBL:CH471072 GO:GO:0006406 Gene3D:1.25.40.180
GO:GO:0035145 EMBL:AC073160 EMBL:AL138898 eggNOG:NOG321770
KO:K14327 InterPro:IPR007193 Pfam:PF04050 PDB:1UW4 PDBsum:1UW4
PDB:2WJV PDBsum:2WJV EMBL:AF301013 EMBL:AB037829 EMBL:AK000764
EMBL:AK096191 EMBL:AL645617 EMBL:BC114964 EMBL:BC115737
EMBL:AL080198 IPI:IPI00300504 IPI:IPI00472081 PIR:T12507
RefSeq:NP_056357.1 RefSeq:NP_542166.1 UniGene:Hs.370689
UniGene:Hs.610110 UniGene:Hs.732383 ProteinModelPortal:Q9HAU5
SMR:Q9HAU5 DIP:DIP-31148N IntAct:Q9HAU5 MINT:MINT-265195
STRING:Q9HAU5 PhosphoSite:Q9HAU5 DMDM:60390647 PaxDb:Q9HAU5
PRIDE:Q9HAU5 Ensembl:ENST00000356352 Ensembl:ENST00000357604
Ensembl:ENST00000379172 Ensembl:ENST00000397053 GeneID:26019
KEGG:hsa:26019 UCSC:uc001ila.3 CTD:26019 GeneCards:GC10M011962
HGNC:HGNC:17854 MIM:605529 neXtProt:NX_Q9HAU5 PharmGKB:PA134945630
HOVERGEN:HBG079124 InParanoid:Q9HAU5 OMA:YLEQMMR OrthoDB:EOG4W3SM5
PhylomeDB:Q9HAU5 ChiTaRS:UPF2 EvolutionaryTrace:Q9HAU5
GenomeRNAi:26019 NextBio:47788 ArrayExpress:Q9HAU5 Bgee:Q9HAU5
Genevestigator:Q9HAU5 GermOnline:ENSG00000151461 Uniprot:Q9HAU5
Length = 1272
Score = 949 (339.1 bits), Expect = 3.4e-126, Sum P(2) = 3.4e-126
Identities = 186/351 (52%), Positives = 245/351 (69%)
Query: 427 ETEKEKLKGVEGTNL----DALLQRLPGCVSRDLIDQLTVEFCY-LNSKSNRKRLVRALF 481
E E+E + G++L DA LQ+LP CV+RDLID+ ++FC +N+K+NRK+LVRALF
Sbjct: 550 EQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANRKKLVRALF 609
Query: 482 NVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIRNIRF 541
VPR L+LLP+Y+R+VATL CM DV+ L ML +F F + KKDQ+NIETK + +RF
Sbjct: 610 IVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRF 669
Query: 542 IGELCKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETSIRMANMLE 601
IGEL KFK+ CLK L DF+HH+I++AC LLETCGRFL+RSPE+ +R + +LE
Sbjct: 670 IGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESHLRTSVLLE 729
Query: 602 ILMRLKNVKNLDPRHVTLVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFSDLDKSSIE 661
+MR K +LD R+VT+VENAYY C PP V K RPPL +Y+RKLL+ DL K + E
Sbjct: 730 QMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTE 789
Query: 662 HVLRQLRKLPWSDCE--SYLLKCFMKVHKGKYGQIHLIASLTAGLSRYHDEFAVAVVDEV 719
VLRQ+RKLPW D E Y++ C + + KY IH +A+L AGL Y ++ + VVD V
Sbjct: 790 KVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVGIHVVDGV 849
Query: 720 LEEIRLGLELNDYGMQQRRLAHMRFLGELYNYEHVDSSVIFDTLYLILVFG 770
LE+IRLG+E+N QRR++ +FLGELYNY V+S+VIF TLY FG
Sbjct: 850 LEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFG 900
Score = 311 (114.5 bits), Expect = 3.4e-126, Sum P(2) = 3.4e-126
Identities = 93/307 (30%), Positives = 151/307 (49%)
Query: 63 ICSLLHQRYKDFSPCLIDGLLKVFFPGKSGEDLDADRNLKAMKKRSTLKLLLELYXXXXX 122
+CSL HQRY DF+P L+ + K F + E N+ K R+ L+ + EL
Sbjct: 225 LCSLFHQRYADFAPSLLQ-VWKKHFEARKEEKTP---NIT--KLRTDLRFIAELTIVGIF 278
Query: 123 XXXXXXXXXXKDLTSIEHLKDRDTTQTNLTLLASFARQ-GRIFLGL-P--LSGPGQEIYE 178
+ L +I + DR++ T+++++ SF R G GL P + ++
Sbjct: 279 TDKEGLSLIYEQLKNIINA-DRES-HTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNL 336
Query: 179 EFFKGLNITADQKKIFKKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEENS 238
F I+ ++++ F+ Y+ ++ + L+ +H L+ E +N +IL++KGELSE+
Sbjct: 337 SFPPSEIISPEKQQPFQNLLKEYFTSLTKHLKRDHRELQNTERQNRRILHSKGELSEDRH 396
Query: 239 SSYEKLRKSYDHLYRNVSSLAEALDMQPPVMPEDVHTTRVTS-GEDA-SPASGKDSSVPE 296
YE+ SY L N SLA+ LD P +P+D T G D +P + +
Sbjct: 397 KQYEEFAMSYQKLLANSQSLADLLDENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEG 456
Query: 297 PVWDDEETRAFYECLPDLRAFVPAVLLGEAEHKANEPSVKPLEQPTDPASEPDQGQLAAQ 356
+W+DE+ R FYE L DL+AFVPA+L K NE S + E D E + ++
Sbjct: 457 GIWEDEDARNFYENLIDLKAFVPAILF-----KDNEKSCQNKESNKDDTKEAKE----SK 507
Query: 357 DTAEVSA 363
+ EVS+
Sbjct: 508 ENKEVSS 514
Score = 69 (29.3 bits), Expect = 8.3e-26, Sum P(2) = 8.3e-26
Identities = 25/123 (20%), Positives = 55/123 (44%)
Query: 480 LFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIRNI 539
++NV S+ + + ++A L +DV ++ + E+ + + +I +
Sbjct: 816 IWNVKYNSIHCV---ANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSA 872
Query: 540 RFIGELCKFKIAPAGLVFSCL-------------KACLDDFTH-HNIDVACNLLETCGRF 585
+F+GEL +++ + ++F L + LD H I + C +L+TCG++
Sbjct: 873 KFLGELYNYRMVESAVIFRTLYSFTSFGVNPDGSPSSLDPPEHLFRIRLVCTILDTCGQY 932
Query: 586 LYR 588
R
Sbjct: 933 FDR 935
>ZFIN|ZDB-GENE-090715-1 [details] [associations]
symbol:upf2 "UPF2 regulator of nonsense transcripts
homolog (yeast)" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0016070 "RNA metabolic process" evidence=IEA] [GO:0009790
"embryo development" evidence=IMP] InterPro:IPR003890
InterPro:IPR016021 InterPro:IPR016024 Pfam:PF02854 SMART:SM00543
ZFIN:ZDB-GENE-090715-1 SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0003723
GO:GO:0009790 GO:GO:0016070 Gene3D:1.25.40.180 eggNOG:NOG321770
HOGENOM:HOG000180856 EMBL:FM986818 IPI:IPI00901914
UniGene:Dr.115342 STRING:C5J7W5 Uniprot:C5J7W5
Length = 1011
Score = 948 (338.8 bits), Expect = 3.4e-126, Sum P(2) = 3.4e-126
Identities = 185/357 (51%), Positives = 250/357 (70%)
Query: 427 ETEKEKLKGVEGTNL----DALLQRLPGCVSRDLIDQLTVEFCY-LNSKSNRKRLVRALF 481
E E+E + G++L DA +Q+LP C++RDLID+ ++FC +N+KSNR++LVRALF
Sbjct: 536 EQEQEDEEASTGSHLKLIVDAFIQQLPNCINRDLIDKAAMDFCMNMNTKSNRRKLVRALF 595
Query: 482 NVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIRNIRF 541
VPR L+LLP+Y+R+VATL CM DV+ L ML+ +F F I KKDQ+NIETK + +RF
Sbjct: 596 TVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHIRKKDQINIETKNKTVRF 655
Query: 542 IGELCKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETSIRMANMLE 601
IGEL KFK+ CLK L DF+HH+I++AC LLETCGRFL+RSP++ +R + +LE
Sbjct: 656 IGELAKFKMFSKTDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPDSHLRTSVLLE 715
Query: 602 ILMRLKNVKNLDPRHVTLVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFSDLDKSSIE 661
+MR K ++LD R+VT+VENAYY C PP V + RPPL +YIRKLL+ DL K + E
Sbjct: 716 QMMRKKQAQHLDVRYVTMVENAYYYCNPPPMEKTVRRKRPPLQEYIRKLLYKDLSKVTTE 775
Query: 662 HVLRQLRKLPWSDCE--SYLLKCFMKVHKGKYGQIHLIASLTAGLSRYHDEFAVAVVDEV 719
VLRQ+RKLPW D E YL+ C + + KY IH +A+L AGL Y ++ + VVD V
Sbjct: 776 KVLRQMRKLPWHDSEVKGYLICCMVNIWNVKYNSIHCVANLLAGLVAYQEDVGIHVVDGV 835
Query: 720 LEEIRLGLELNDYGMQQRRLAHMRFLGELYNYEHVDSSVIFDTLYLILVFGHGTAET 776
LE+IRLG+E+N QRR++ +FLGELYNY V+S+VIF +L+ + FG T T
Sbjct: 836 LEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRSLFSFISFGVNTDGT 892
Score = 312 (114.9 bits), Expect = 3.4e-126, Sum P(2) = 3.4e-126
Identities = 91/316 (28%), Positives = 155/316 (49%)
Query: 63 ICSLLHQRYKDFSPCLIDGLLKVFFPGKSGEDLDADRNLKAMKKRSTLKLLLELYXXXXX 122
+CSL HQRY +F+P L+ K F + E + K R+ L+ + EL
Sbjct: 223 LCSLFHQRYAEFAPLLL-AAWKRHFEARKEE-----KTPNVSKLRTDLRFIAELTIVGLF 276
Query: 123 XXXXXXXXXXKDLTSIEHLKDRDTTQTNLTLLASFARQ-GRIFLGL-P--LSGPGQEIYE 178
+ L +I DR+T T+++++ SF + G GL P + ++
Sbjct: 277 TDKEGLSLIYEQLKNII-AADRET-HTHVSVIISFCKHCGDDIAGLVPRKVKNAAEKYSL 334
Query: 179 EFFKGLNITADQKKIFKKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEENS 238
F I A++++ F+ Y+ ++ + L+ +H L+ +E +N +IL++KGELSE+
Sbjct: 335 SFPPSQIINAEKQQPFQNLLREYFTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRH 394
Query: 239 SSYEKLRKSYDHLYRNVSSLAEALDMQPPVMPEDVHTTRVTSGEDA-SPASGKDSSVPEP 297
YE+ Y L N +LA+ LD P P + G D +P + +
Sbjct: 395 KQYEEFATQYQKLLANTQTLADLLDENMPNCPRTKPYRKHGPGIDIFTPGKPGEYDLEGG 454
Query: 298 VWDDEETRAFYECLPDLRAFVPAVLLGEAEHKANEPSVKPLEQPTDPASEPDQGQLAAQD 357
+W+DE+ R FYE + DL+AFVPA+L + E K+++ S + E ++E + +L A D
Sbjct: 455 IWEDEDARNFYENMVDLKAFVPAILFKDNE-KSSQSSKESRE---GNSTEELEMELEALD 510
Query: 358 TAEVSADLGASPEGKS 373
A+ DL A+ E +S
Sbjct: 511 IADEPMDLDATDEVES 526
Score = 71 (30.1 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 25/127 (19%), Positives = 54/127 (42%)
Query: 476 LVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETK 535
L+ + N+ + + ++A L +DV ++ + E+ + + +
Sbjct: 795 LICCMVNIWNVKYNSIHCVANLLAGLVAYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRR 854
Query: 536 IRNIRFIGELCKFKIAPAGLVFSCL-------------KACLDDFTH-HNIDVACNLLET 581
I + +F+GEL +++ + ++F L + LD H I + C LL+T
Sbjct: 855 ISSAKFLGELYNYRMVESAVIFRSLFSFISFGVNTDGTASPLDPPEHLFRIRMVCTLLDT 914
Query: 582 CGRFLYR 588
CG++ R
Sbjct: 915 CGQYFDR 921
Score = 49 (22.3 bits), Expect = 2.0e-98, Sum P(2) = 2.0e-98
Identities = 13/62 (20%), Positives = 28/62 (45%)
Query: 190 QKKIFKKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEENSSSYEKLRKSYD 249
++K KK A +E + E +Q+E + K+L + + E ++ + ++ D
Sbjct: 67 EEKERKKKEEEKQRAEEEQRKKEEEEKKQLEEQEKKLLEEEAKRQREEEAAQIREKEEAD 126
Query: 250 HL 251
L
Sbjct: 127 QL 128
>ASPGD|ASPL0000002256 [details] [associations]
symbol:nmdA species:162425 "Emericella nidulans"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=IMP] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IMP] [GO:0005829
"cytosol" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IEA] InterPro:IPR003890
InterPro:IPR016021 InterPro:IPR016024 Pfam:PF02854 SMART:SM00543
SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0003723 EMBL:BN001301
GO:GO:0016070 EMBL:AACD01000112 Gene3D:1.25.40.180 eggNOG:NOG321770
KO:K14327 OrthoDB:EOG4NW2TJ InterPro:IPR007193 Pfam:PF04050
OMA:YLEQMMR RefSeq:XP_664299.1 ProteinModelPortal:Q5AYD5
STRING:Q5AYD5 EnsemblFungi:CADANIAT00007480 GeneID:2870476
KEGG:ani:AN6695.2 HOGENOM:HOG000180856 Uniprot:Q5AYD5
Length = 1170
Score = 804 (288.1 bits), Expect = 2.4e-95, Sum P(2) = 2.4e-95
Identities = 156/355 (43%), Positives = 234/355 (65%)
Query: 423 ERKVETEKEKL---KGVEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKRLVRA 479
ER E + + + G +DALL +LP +++ +DQ+ ++FC+LNSK++R RLV+A
Sbjct: 485 ERTTEADDQSMAIASKTVGAQVDALLAKLPELQTKEQVDQMALDFCFLNSKASRNRLVKA 544
Query: 480 LFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNI-ETKIRN 538
+ ++P+ ++LLP YSR+VATL M D+ L L+EEF L +K + + + ++ N
Sbjct: 545 ISDIPKGRIDLLPLYSRLVATLGQYMPDIPQGLTTYLDEEFRSLQRRKSKEFLGQVRMSN 604
Query: 539 IRFIGELCKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETSIRMAN 598
IR++ EL KF + P ++F C K LDDF+ NI++ +LLE CGR+L R+P+TS RMA+
Sbjct: 605 IRYLAELTKFGVVPEHIIFHCFKVSLDDFSRMNIEIIGHLLENCGRYLLRNPDTSPRMAS 664
Query: 599 MLEILMRLKNVKNLDPRHVTLVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFSDLDKS 658
LE L R K V++L P+ ++ENA Y PP+R A K R P+ YIRKL++ D++K
Sbjct: 665 FLETLGRKKTVQHLGPQERMIIENAVYYVDPPQRPAIQQKERTPMESYIRKLIYLDMNKR 724
Query: 659 SIEHVLRQLRKLPWSDCES-YLL-KCFMKVHKGKYGQIHLIASLTAGLSRYHDEFAVAVV 716
+ +L+ +RKL W + E ++L + F K K KYG IHL+A L + L RYH F + +V
Sbjct: 725 NYTKILKSVRKLHWEEPEVVHILERVFSKPAKVKYGNIHLLAILVSALYRYHQGFVIGIV 784
Query: 717 DEVLEEIRLGLELNDYGMQQRRLAHMRFLGELYNYEHVDSSVIFDTLYLILVFGH 771
D +LE I LGLE ND+ Q+R+A +++LGELYNY+ +DS VIFDTLY I+ +GH
Sbjct: 785 DNILEYITLGLEQNDFKFNQKRIAEVKYLGELYNYKMIDSPVIFDTLYRIVTYGH 839
Score = 171 (65.3 bits), Expect = 2.4e-95, Sum P(2) = 2.4e-95
Identities = 51/189 (26%), Positives = 83/189 (43%)
Query: 194 FKKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEENSSSYEKLRKSYDHLYR 253
FK + Y V+ + + +L NA+ GE+ E+ +++E+ KS + L
Sbjct: 315 FKSILNRYLEDVKAHVMRDQKALTAQSRRNAEAYVKSGEIFEDRQANFERQTKSLEKLVA 374
Query: 254 NVSSLAEALDMQPPVMPEDVHTTRVTSGEDASPASG---KDSSVPEPVWDDEETRAFYEC 310
N L E L ++ P + + SG + + +W+DEE R FYE
Sbjct: 375 NTQVLCEILGVEMPALATQEASDPAASGGIGLVKTSEYLRGQGEGPGIWEDEEERRFYEN 434
Query: 311 LPDLRAFVPAVLLGEAEHK---ANEPSVKPLEQPTDPASEPD--QGQLAAQDTAEVSADL 365
L DL+ VPAVLL + + K EP+ K + +SE Q Q++ + T E D
Sbjct: 435 LVDLKGKVPAVLLDDGKKKKTETGEPTKKKESEAGHESSEKTEPQSQISEERTTEAD-DQ 493
Query: 366 GASPEGKSV 374
+ K+V
Sbjct: 494 SMAIASKTV 502
Score = 56 (24.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 19/66 (28%), Positives = 29/66 (43%)
Query: 565 DDFTHHNIDVACNLLETCGRFLYRSPETSIRMANMLEILMRLKNVKNLDPRHVT-LVENA 623
DDF I + C LL+TCG R ++ L+ K+ P + LV++
Sbjct: 856 DDF--FRIRLVCQLLDTCGHCFDRGSAKK-KLDFFLKFFQYYICTKDPLPMDIDFLVQDT 912
Query: 624 YYLCKP 629
Y L +P
Sbjct: 913 YSLTRP 918
Score = 41 (19.5 bits), Expect = 1.2e-81, Sum P(2) = 1.2e-81
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 325 EAEHKANEPSVKPLEQPTDP-ASEPDQGQLA-AQDT--AEVSADLGASPE 370
EA H+++E + +P Q ++ +E D +A A T A+V A L PE
Sbjct: 467 EAGHESSEKT-EPQSQISEERTTEADDQSMAIASKTVGAQVDALLAKLPE 515
>FB|FBgn0029992 [details] [associations]
symbol:Upf2 "Upf2" species:7227 "Drosophila melanogaster"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0035195 "gene silencing by miRNA" evidence=IMP]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA;IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0007274 "neuromuscular synaptic
transmission" evidence=IDA] [GO:0050808 "synapse organization"
evidence=IDA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 SUPFAM:SSF48371
GO:GO:0000184 GO:GO:0003677 GO:GO:0007274 EMBL:AE014298
GO:GO:0050808 GO:GO:0003723 Gene3D:1.25.40.180 KO:K14327
InterPro:IPR007193 Pfam:PF04050 GeneTree:ENSGT00530000064318
CTD:26019 OMA:YLEQMMR FlyBase:FBgn0029992 EMBL:BT024221
RefSeq:NP_572434.1 UniGene:Dm.17613 SMR:Q9W3L1 IntAct:Q9W3L1
STRING:Q9W3L1 EnsemblMetazoa:FBtr0071117 GeneID:31724
KEGG:dme:Dmel_CG2253 UCSC:CG2253-RA InParanoid:Q9W3L1
GenomeRNAi:31724 NextBio:775022 Uniprot:Q9W3L1
Length = 1241
Score = 712 (255.7 bits), Expect = 7.8e-86, Sum P(2) = 7.8e-86
Identities = 140/332 (42%), Positives = 207/332 (62%)
Query: 442 DALLQRLPGCVSRDLIDQLTVEFCY-LNSKSNRKRLVRALFNVPRTSLELLPYYSRMVAT 500
D L L CV+++LID +EF N+K RK+L R +F+V RT L++LPY SR VA
Sbjct: 512 DGFLVNLFNCVNKELIDSAAIEFLLNFNTKHQRKKLTRTIFSVQRTRLDILPYLSRFVAI 571
Query: 501 LSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIAPAGLVFSCL 560
+ C DV++ L ++L +EF + I+KK+Q+NIETK++ +RFIGEL KF + CL
Sbjct: 572 VHMCNTDVATDLAELLRKEFKWHIHKKNQLNIETKLKIVRFIGELVKFGLFKKFDALGCL 631
Query: 561 KACLDDFTHHNIDVACNLLETCGRFLYRSPETSIRMANMLEILMRLKNVKNLDPRHVTLV 620
K L DF HH I++AC +E G +LY + + M L+ ++RLK +D RH +
Sbjct: 632 KMLLRDFQHHQIEMACAFVEVTGVYLYNCRDARLLMNVFLDQMLRLKTATAMDSRHAAQI 691
Query: 621 ENAYYLCKPPERSARVSKVRPPLHQYIRKLLFSDLDKSSIEHVLRQLRKLPWSDCES--Y 678
E+ YYL KPPE S R VRP +H+YIR L+F +L K +++ ++ LR++ W D E+ Y
Sbjct: 692 ESVYYLVKPPESSKREPMVRPAMHEYIRYLIFEELCKQNVDRCIKMLRRIDWQDPETNCY 751
Query: 679 LLKCFMKVHKGKYGQIHLIASLTAGLSRYHDEFAVAVVDEVLEEIRLGLELNDYGMQQRR 738
+KC K + ++ I +A L +GLS Y V+D V E+IR GLE++ M QRR
Sbjct: 752 AIKCLSKAYLLRFQLIRCLADLVSGLSSYQPRAVTIVIDNVFEDIRAGLEIHSPRMAQRR 811
Query: 739 LAHMRFLGELYNYEHVDSSVIFDTLYLILVFG 770
+A ++LGE+YNY+ V+S+ I +TLY I+ G
Sbjct: 812 IAMAKYLGEMYNYKLVESTNILNTLYSIISLG 843
Score = 183 (69.5 bits), Expect = 7.8e-86, Sum P(2) = 7.8e-86
Identities = 77/298 (25%), Positives = 122/298 (40%)
Query: 63 ICSLLHQRYKDFSPCLIDGLLKVFFPGKSGEDLDADRNLKAMKKRSTLKLLLELYXXXXX 122
+ S LH Y DF ++ K K+ E + K R L+L EL
Sbjct: 161 LASRLHCTYADFDVHFLEAWQKALNI-KATEKIG-----NPSKLRVDLRLFAELVSSGVI 214
Query: 123 XXXXXXXXXXKDLTSIEHLKDRDTTQTNLTLLASFARQ-GRIFLGL-P--LSGPGQEIYE 178
L + L D+D +N +++ SF R G + GL P + +
Sbjct: 215 QMKPGLAQLGVVLVHLIAL-DKDD-HSNFSIILSFCRHCGEEYAGLVPQKMQQLATKYGV 272
Query: 179 EFFKGLNITADQKKIFKKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEENS 238
E K +TAD++ + Y+ A+ + + AE L M + + KGE+S E
Sbjct: 273 EVPKSDFLTADKQLNLRTMLKGYFKALCKHVLAEQAELMNMTKNIRRTMECKGEISTEKR 332
Query: 239 SSYEKLRKSYDHLYRNVSSLAEALDMQPPVMPEDVHTTRVTSGEDASPASGKDSSVPEPV 298
E ++ +D L + SL+E L P + ++ + D + V +P
Sbjct: 333 EKCELMQAGFDKLLASAQSLSELLGEPLPELAKESEGCNPGTVID-NMLDSASFGVLDP- 390
Query: 299 WDDEETRAFYECLPDLRAFVPAVLLGEAEHKANEPSVKPLEQPTDPASEPDQGQLAAQ 356
W DEETRAFY LPDLR F+P A + ++ LE+P++ E L A+
Sbjct: 391 WGDEETRAFYTDLPDLRQFLP-------NFSAPKVDLETLEEPSELTEEAIDANLDAE 441
Score = 40 (19.1 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 26/99 (26%), Positives = 43/99 (43%)
Query: 572 IDVACNLLETCGRFLYRSPETSIRMANMLEILMRLKNVKNLDPRHVTLVENAYYLCKP-P 630
+ +AC LL+TC + + S T ++ L K P + EN L
Sbjct: 863 LKLACMLLDTCAPY-FTSQATRKKLDYFLVFFQHYYWFKKSHPVF-SKTENTSDLFPILM 920
Query: 631 ERSAR--VSKVRPPLHQYIRKLLFSDLDKSSIEHVLRQL 667
+ + R + VRP L Y K L + K++I+H+ +L
Sbjct: 921 DHTYRDCLLNVRPKLKIY--KSL--EQAKAAIDHLQEKL 955
>DICTYBASE|DDB_G0281623 [details] [associations]
symbol:upf2 "eukaryotic initiation factor 4 gamma,
middle domain-containing protein" species:44689 "Dictyostelium
discoideum" [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
SMART:SM00543 dictyBase:DDB_G0281623 SUPFAM:SSF48371 GO:GO:0003677
EMBL:AAFI02000042 GO:GO:0003743 GO:GO:0016070 Gene3D:1.25.40.180
eggNOG:NOG321770 KO:K14327 RefSeq:XP_640540.1
ProteinModelPortal:Q54TQ1 EnsemblProtists:DDB0204566 GeneID:8623150
KEGG:ddi:DDB_G0281623 InParanoid:Q54TQ1 OMA:KTWEEAN Uniprot:Q54TQ1
Length = 1395
Score = 609 (219.4 bits), Expect = 3.9e-74, Sum P(2) = 3.9e-74
Identities = 128/358 (35%), Positives = 207/358 (57%)
Query: 422 TERKVETEKEKLKGVEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKRLVRALF 481
T ++E EK+++K L+ ++++L +ID L EF L SK + L + L
Sbjct: 731 TSEEIEKEKQRVKHC----LEDIVKQLKNSNKPSVIDSLVTEFIKLPSKFTKLFLQQLLL 786
Query: 482 NVPRTSLELLPYYSRMVATL--STCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIRNI 539
+ + ++ +P R +AT+ S ++ + I+ +EE+ L KK+ + K+RNI
Sbjct: 787 H---SRIDHIPSICRFLATIYQSNSYREYVNTFIKEIEEDMKGLFEKKEPNLLNVKLRNI 843
Query: 540 RFIGELCKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETSIRMANM 599
FI E KF I P FS L+ C DDF HNIDVAC + ETCGRFLYR+P+T IR+ NM
Sbjct: 844 TFISEFIKFSILPKSTAFSYLRICFDDFIQHNIDVACLIFETCGRFLYRTPDTQIRLRNM 903
Query: 600 LEILMRLKNVKNLDPRHVTLVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFSDLDKSS 659
L+IL++ +N +L +VENAY C+P + ++ P + ++++ L+F L ++
Sbjct: 904 LDILIKYRNSTSLGATKEPMVENAYLACRP--LVVKRKQINP-IKKFVKFLIFKYLSSTT 960
Query: 660 IEHVLRQLRKLPWSDCESYLLKCFMKVHKGKYGQIHLIASLTAGLSRYHDEFAVAVVDEV 719
++ ++ ++ +LPW DC YL K + V KGK+G I+LIA + L Y+ EF V+ ++
Sbjct: 961 LDRIVEKILQLPWPDCSDYLCKYLLDVQKGKFGNIYLIADVLYHLKEYYPEFVRHVIWKL 1020
Query: 720 LEEIRLGLELNDYGMQQRRLAHMRFLGELYNYEHVDSSVIFDTLYLILVFGHGTAETY 777
EEI +G E ND+ Q+R+ + GELYN ++++ IFD L L FG+ T+ +
Sbjct: 1021 YEEITIGFEKNDFNYNQKRIMQVTLFGELYNACLLETNHIFDLLIGALEFGYTTSHLF 1078
Score = 181 (68.8 bits), Expect = 3.9e-74, Sum P(2) = 3.9e-74
Identities = 57/252 (22%), Positives = 117/252 (46%)
Query: 62 KICSLLHQRYKDFSPCLIDGLLKVFFPGK-SGEDLDADRNLKAMKKRSTLKLLLELYXXX 120
++ S+++Q+Y D + + + F P + D + +RN K K+R ++++++L+
Sbjct: 390 QVLSMMYQKYDDVDTIIAEQIPPFFTPLIIASTDSENERNSKITKRRFIIRIMIDLFCVD 449
Query: 121 XXXXXXXXXXXXKDLTSIEHLK-DRDTTQTNLTLLASFARQGRIFLGLPLSGPGQEIYE- 178
L++ ++ D+++ NL F +Q + +S +I +
Sbjct: 450 IIHSYQPIYKLVSKLSTSSTIEQDKESGYGNLLTFLVFLKQFQ-----QVSNYKDKIPDL 504
Query: 179 -EFFKGLNITADQKKIFKKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEEN 237
F L +T ++ K YY + L E + LR E E + KGE+ EE+
Sbjct: 505 INLFHSL-LTTEEITNTKNLISNYYQTLCNFLTKEKSLLRDREKEIKLFMRTKGEVPEES 563
Query: 238 SSSYEKLRKSYDHLYRNVSSLAEALDMQPPVMPEDVHTTRVTSGEDASPASGKDSSVPEP 297
S Y+ +RK Y+ L N+SS AE + +P +P + ++ ++ E + + V +
Sbjct: 564 SKDYDSMRKQYEKLITNISSFAELIG-EP--IPNNDYSFQLEE-EINNEQKSEQLEVFDS 619
Query: 298 VWDDEETRAFYE 309
++++E + FYE
Sbjct: 620 PFENDEQKQFYE 631
>UNIPROTKB|F1RUP4 [details] [associations]
symbol:LOC100621126 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 SUPFAM:SSF48371
GO:GO:0003677 GO:GO:0003723 GO:GO:0016070 Gene3D:1.25.40.180
GeneTree:ENSGT00530000064318 Ensembl:ENSSSCT00000012166 OMA:IRQVHEL
Uniprot:F1RUP4
Length = 460
Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
Identities = 133/249 (53%), Positives = 173/249 (69%)
Query: 524 INKKDQMNIETKIRNIRFIGELCKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCG 583
+ KKDQ+NIETK + +RFIGEL KFK+ CLK L DF+HH+I++AC LLETCG
Sbjct: 1 VRKKDQINIETKNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCG 60
Query: 584 RFLYRSPETSIRMANMLEILMRLKNVKNLDPRHVTLVENAYYLCKPPERSARVSKVRPPL 643
RFL+RSPE+ +R + +LE +MR K +LD R+VT+VENAYY C PP V K RPPL
Sbjct: 61 RFLFRSPESHLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPL 120
Query: 644 HQYIRKLLFSDLDKSSIEHVLRQLRKLPWSDCE--SYLLKCFMKVHKGKYGQIHLIASLT 701
+Y+RKLL+ DL K + E VLRQ+RKLPW D E Y++ C + + KY IH +A+L
Sbjct: 121 QEYVRKLLYKDLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLL 180
Query: 702 AGLSRYHDEFAVAVVDEVLEEIRLGLELNDYGMQQRRLAHMRFLGELYNYEHVDSSVIFD 761
AGL Y ++ + VVD VLE+IRLG+E+N QRR++ +FLGELYNY V+S+VIF
Sbjct: 181 AGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFR 240
Query: 762 TLYLILVFG 770
TLY FG
Sbjct: 241 TLYSFTSFG 249
>POMBASE|SPAC19A8.08 [details] [associations]
symbol:upf2 "nonsense-mediated decay protein Upf2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
Pfam:PF02854 SMART:SM00543 PomBase:SPAC19A8.08 GO:GO:0005829
EMBL:CU329670 SUPFAM:SSF48371 GO:GO:0000184
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0003723
Gene3D:1.25.40.180 EMBL:AF301014 PIR:T37953 RefSeq:NP_593784.1
ProteinModelPortal:O13824 STRING:O13824 EnsemblFungi:SPAC19A8.08.1
GeneID:2542147 KEGG:spo:SPAC19A8.08 eggNOG:NOG321770 KO:K14327
OMA:QKERTPI OrthoDB:EOG4NW2TJ NextBio:20803219 InterPro:IPR007193
Pfam:PF04050 Uniprot:O13824
Length = 1049
Score = 531 (192.0 bits), Expect = 6.6e-57, Sum P(3) = 6.6e-57
Identities = 111/329 (33%), Positives = 187/329 (56%)
Query: 439 TNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKRLVRALFNVPRTSLELLPYYSRMV 498
+ +D L +LP VS +L +++ +EF LN+K++R RL++AL +PRTS L+PYY R+
Sbjct: 443 SRVDNFLLKLPSMVSLELTNEMALEFYDLNTKASRNRLIKALCTIPRTSSFLVPYYVRLA 502
Query: 499 ATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIAPAGLVFS 558
LS + S+ L+ F +I++K + +T++ +R+I EL KF++ P +VF
Sbjct: 503 RILSQLSSEFSTSLVDHARHSFKRMIHRKAKHEYDTRLLIVRYISELTKFQLMPFHMVFE 562
Query: 559 CLKACLDDFTHHNIDVACNLLETCGRFLYRSPETSIRMANMLEILMRLKNVKNLDPRHVT 618
C K C+++FT +++V LLE+CGRFL R PET ++M + LE + + K L +
Sbjct: 563 CYKLCINEFTPFDLEVLALLLESCGRFLLRYPETKLQMQSFLEAIQKKKLASALASQDQL 622
Query: 619 LVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFSDLDKSSIEHVLRQLRKLPWSDCESY 678
++ENA + PP+R VSK + +++ L+ L ++ L LRK W D
Sbjct: 623 VLENALHFVNPPKRGIIVSKKKSLKEEFLYDLIQIRLKDDNVFPTLLLLRKFDWKDDYQI 682
Query: 679 LLKCFMKVHKGKYGQIHLIASLTAGLSRYHDEFAVAVVDEVLEEIRLGLELNDYGMQQRR 738
L M+V KY ++ +A L + L ++H EF + V+D+ LE + + +D+ +Q+R
Sbjct: 683 LYNTIMEVWNIKYNSLNALARLLSALYKFHPEFCIHVIDDTLESLFSAVNNSDHVEKQKR 742
Query: 739 LAHMRFLGELYNYEHVDSSVIFDTLYLIL 767
LA RF+ EL +D I + L+ +L
Sbjct: 743 LAQARFISELCVIHMLDVRAITNFLFHLL 771
Score = 74 (31.1 bits), Expect = 6.6e-57, Sum P(3) = 6.6e-57
Identities = 27/125 (21%), Positives = 58/125 (46%)
Query: 195 KKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEENSSSYEKLRKSYDHLYRN 254
+K+ ++Y + ++ Q + ++ + + + + + E KS + + +
Sbjct: 271 RKSLNSYVDKLEVYCQKRKSLFEELNKQYQEQSIIRADPNNEKFQRLANFSKSIESEFSS 330
Query: 255 VSSLAEALDMQPPV-MPEDVHTTRVTSGEDAS-PASGK--DSSVPEP--VWDDEETRAFY 308
+SL+E L+ + + E + +SG ++ ASG+ +S+ E VWDD E FY
Sbjct: 331 YASLSEVLNRKASEDLLELNFMEKASSGTNSVFNASGERSESANVETAQVWDDREQYFFY 390
Query: 309 ECLPD 313
E P+
Sbjct: 391 EVFPN 395
Score = 38 (18.4 bits), Expect = 6.6e-57, Sum P(3) = 6.6e-57
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 86 FFPGKSGED--LDADRNLKAMKKRSTLKLLLELY 117
+F K E+ + DR+ +K R L+ L+E +
Sbjct: 139 YFELKQNENEVSEKDRSSHLLKVRPLLRFLIEFW 172
>SGD|S000001119 [details] [associations]
symbol:NMD2 "Protein involved in the nonsense-mediated mRNA
decay (NMD) pathway" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IGI] [GO:0005844 "polysome"
evidence=IDA] [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0006452 "translational frameshifting" evidence=IMP]
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
Pfam:PF02854 SMART:SM00543 SGD:S000001119 GO:GO:0005737
SUPFAM:SSF48371 GO:GO:0003677 EMBL:BK006934 GO:GO:0003723
GO:GO:0005844 Gene3D:1.25.40.180 GO:GO:0070478 EMBL:U10556
eggNOG:NOG321770 KO:K14327 OrthoDB:EOG4NW2TJ InterPro:IPR007193
Pfam:PF04050 EMBL:U14974 EMBL:U12137 EMBL:U28158 PIR:S48244
RefSeq:NP_011944.2 ProteinModelPortal:P38798 SMR:P38798
DIP:DIP-2295N IntAct:P38798 MINT:MINT-1521719 STRING:P38798
PaxDb:P38798 EnsemblFungi:YHR077C GeneID:856476 KEGG:sce:YHR077C
CYGD:YHR077c GeneTree:ENSGT00530000064318 OMA:YLDNGFR
NextBio:982152 Genevestigator:P38798 GermOnline:YHR077C
Uniprot:P38798
Length = 1089
Score = 471 (170.9 bits), Expect = 2.4e-49, Sum P(2) = 2.4e-49
Identities = 110/356 (30%), Positives = 188/356 (52%)
Query: 423 ERKVETEKEKLKGVEGTNLDALLQRLPGCVSRDLIDQLTVEF--CYLNSKSNRKRLVRAL 480
E ++ EK V N++ L +D+ID L+ + YL++K+ R R+++
Sbjct: 358 EESQSSKTEKDSNVNSKNINLFFTDLEMADCKDIIDDLSNRYWSSYLDNKATRNRILK-- 415
Query: 481 FNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIRNIR 540
F + LP YSR +AT S M ++ S I L+ F ++ +++N+ +NI
Sbjct: 416 FFMETQDWSKLPVYSRFIATNSKYMPEIVSEFINYLDNGFRSQLHS-NKINV----KNII 470
Query: 541 FIGELCKFKIAPAGLVFSCLKACLDDF-THHNIDVACNLLETCGRFLYRSPETSIRMANM 599
F E+ KF++ P+ ++F ++ + +N+++ LLE G+FL PE M M
Sbjct: 471 FFSEMIKFQLIPSFMIFHKIRTLIMYMQVPNNVEILTVLLEHSGKFLLNKPEYKELMEKM 530
Query: 600 LEILMRLKNVKNLDPRHVTLVENAYYLCKPPE-RSARVS-KVRPPLHQYIRKLLFSDLDK 657
++++ KN + L+ + +EN L PP +S V+ K P Q+ R L+ S+L
Sbjct: 531 VQLIKDKKNDRQLNMNMKSALENIITLLYPPSVKSLNVTVKTITPEQQFYRILIRSELSS 590
Query: 658 SSIEHVLRQLRKLPWSDC--ESYLLKCFMKVHKGKYGQIHLIASLTAGLSRYHDEFAVAV 715
+H+++ +RK W D + L F K HK Y I L+ + GL Y +F +
Sbjct: 591 LDFKHIVKLVRKAHWDDVAIQKVLFSLFSKPHKISYQNIPLLTKVLGGLYSYRRDFVIRC 650
Query: 716 VDEVLEEIRLGLELNDYGMQQRRLAHMRFLGELYNYEHVDSSVIFDTLYLILVFGH 771
+D+VLE I GLE+NDYG R++++R+L E++N+E + S V+ DT+Y I+ FGH
Sbjct: 651 IDQVLENIERGLEINDYGQNMHRISNVRYLTEIFNFEMIKSDVLLDTIYHIIRFGH 706
Score = 117 (46.2 bits), Expect = 2.4e-49, Sum P(2) = 2.4e-49
Identities = 64/290 (22%), Positives = 117/290 (40%)
Query: 62 KICSLLHQRYKD-FSPCLIDGLLKVFFPGKSGEDLDADRN-LKAMKK-RSTLKLLLELYX 118
+I S LHQR+ F+ L+ L+ F D++++R+ L+ + + + L++ ELY
Sbjct: 95 EIISGLHQRFNGRFTSPLLGAFLQAF--ENPSVDIESERDELQRITRVKGNLRVFTELYL 152
Query: 119 XXXXXXXXXXXXXXKDLTSIEHLKDRDTTQTNLTLLASFARQ---GRIFLGL-------- 167
KD +I + + T + + LL S R+ + LG
Sbjct: 153 VGVFRTLDDIES--KD--AIPNFLQKKTGRKD-PLLFSILREILNYKFKLGFTTTIATAF 207
Query: 168 -----PLSGPGQEIYEEFFKGLNITADQKKIFKKAFHTYYNAVQELLQAEHTSLRQMENE 222
PL +++ + + +FK + EL H + +++ E
Sbjct: 208 IKKFAPLFRDDDNSWDDLIYDSKLKGALQSLFKNFIDATFARATEL----HKKVNKLQRE 263
Query: 223 NAKILNAKGELSEENSSSYEKLRKSYDHLYRNVSSLAEALDMQPPVMPEDVHTTRVTSGE 282
+ K G+L +E Y+KL + + +L E ++ +PE + E
Sbjct: 264 HQKCQIRTGKLRDEYVEEYDKLLPIFIRFKTSAITLGEFFKLE---IPELEGASNDDLKE 320
Query: 283 DASPASGKDSSVP-EPVWDDEETRAFYECLPDLRAFVPAVLLGEAEHKAN 331
ASP P + +W++E+TR FYE LPD+ V + E +N
Sbjct: 321 TASPMITNQILPPNQRLWENEDTRKFYEILPDISKTVEESQSSKTEKDSN 370
>WB|WBGene00004881 [details] [associations]
symbol:smg-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IGI] InterPro:IPR003890
InterPro:IPR016021 InterPro:IPR016024 Pfam:PF02854 SMART:SM00543
SUPFAM:SSF48371 GO:GO:0000184 GO:GO:0003677 GO:GO:0003723
EMBL:FO081731 Gene3D:1.25.40.180 eggNOG:NOG321770 KO:K14327
InterPro:IPR007193 Pfam:PF04050 GeneTree:ENSGT00530000064318
OMA:YLEQMMR RefSeq:NP_001122827.1 UniGene:Cel.5203
ProteinModelPortal:C2BR97 SMR:C2BR97 STRING:C2BR97 PaxDb:C2BR97
EnsemblMetazoa:Y73B6BL.18b.1 EnsemblMetazoa:Y73B6BL.18b.2
EnsemblMetazoa:Y73B6BL.18b.3 EnsemblMetazoa:Y73B6BL.18b.4
GeneID:177397 KEGG:cel:CELE_Y73B6BL.18 CTD:177397
WormBase:Y73B6BL.18b HOGENOM:HOG000017788 NextBio:896640
ArrayExpress:C2BR97 Uniprot:C2BR97
Length = 1144
Score = 398 (145.2 bits), Expect = 2.9e-44, Sum P(2) = 2.9e-44
Identities = 97/334 (29%), Positives = 179/334 (53%)
Query: 452 VSRDLIDQLTVEFCY-LNSKSNRKRLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSS 510
VS+ DQ + F LN+K RKRLV+ + + P + ++++P+Y+R+VATL M D+++
Sbjct: 446 VSKYSTDQAAIYFVSNLNNKGCRKRLVKLMIDPPPSRIDVVPFYARLVATLENVMPDLTT 505
Query: 511 MLIQMLEEEFNFLINKKDQ-----MNIETKIRNIRFIGELCKFKIAPAGLVFSCLKACLD 565
++ L E+F + +K + +E+K+ + I EL KF + SCL+ +
Sbjct: 506 EIVTQLLEKFRGFLQQKPSSATAIIKVESKMVCVMMIAELMKFGVISRAEGLSCLRQLVY 565
Query: 566 DFTHHNIDVACNLLETCGRFLYRSPETSIRMANMLEILMRLKNVKNLDPRHVTLVENAYY 625
D H++++ +E+ G +LYR E+ +M +LE++ + K + D R L++NAY+
Sbjct: 566 DLRGHSVEMTATFMESSGLYLYRHTESHAKMKRLLEVV-KAKRERMKDQRQAMLIDNAYF 624
Query: 626 LCKPPERSA------RVSKVRPPLHQYIRKLLFSDLDKSSIEHVLRQLRKLPWSDCE--S 677
C PPE S ++ + P+ ++IR ++ D+++S+++ L+ LR+L W D E
Sbjct: 625 TCLPPEDSKEERLRLKLDEEDTPMKRFIRHIIL-DINESTVDVFLKCLRRLEWYDPEVAD 683
Query: 678 YLLKCFMKVHKGKYGQIHLIASLTAGLSRY-HDEF-AVAVVDEVLEEIRLGLELNDYGMQ 735
Y ++ + +AS AGL H ++ +AV+D +E IR+ LE Q
Sbjct: 684 YAIRYLSSTWLLPIENLQHVASAIAGLCNLVHLQWIGMAVIDSTIETIRISLENPGVYNQ 743
Query: 736 QRRLAHMRFLGELYNYEHVDSSVIFDTLYLILVF 769
A + +L ELY++E D ++ LY ++ +
Sbjct: 744 WAHSAAV-YLAELYSFELCDEDLVLKILYQLISY 776
Score = 151 (58.2 bits), Expect = 2.9e-44, Sum P(2) = 2.9e-44
Identities = 77/317 (24%), Positives = 132/317 (41%)
Query: 62 KICSLLHQRYKDFSPCLIDGLLKVFFPGKSGEDLDADRNLKAMKKRSTLKLLLELYXXXX 121
++C + +Y +FS + G K P K +D+ K R + L EL
Sbjct: 104 ELCLAISAKYSNFSEQMA-GEFKKVLPVKK-----SDKIANVAKLRVDIIFLAELCLCGV 157
Query: 122 XXXXXXXXXXXKDLTSIEHLKDRDTTQ-TNLTLLASFAR----QGRIFLGLPLSGPGQ-E 175
L+ +L D T N+ LLA+ +R Q + +P+ E
Sbjct: 158 FNEKEGLQVLGAVLS---YLIQTDKTDFVNVGLLATVSRTVGWQIANIVPIPMDDAETVE 214
Query: 176 IY-EEFFKGLNITADQKKIFKKAFHTYYNAVQELLQAEHT-SLRQMENENAKILN-AKGE 232
I EE + ++ +QKK ++ F +YY+++ + E T S R + K ++G+
Sbjct: 215 IQDEELPESSALSVEQKKSIRELFKSYYDSLYS--KTEKTCSARNKAMKRVKRQERSRGD 272
Query: 233 LSEENSSSYEKLRKSYDHLYRNVSSLAEALDMQPPVMPEDVHTTRVTSGEDASPASGKDS 292
+E ++ L+ D L + ++ A+ ++ + E+ E A+ G+
Sbjct: 273 AGDEEKTTLNDLQSELDSLRKMAIEISSAIGVEMKPLKEEASDDE--EDEAANLEMGRKL 330
Query: 293 SVPE-PVWDDEETRAFYECLPDLRAFVPAVLLGEAEHKANEPSVKPLEQPTDPASEPDQG 351
+ +W DEET+AFYE L DLR VP L E+E + + K E+ D E +
Sbjct: 331 AEGAIKLWSDEETKAFYEDLIDLRQMVPKDLYKESEQRTLSKA-KMAERIEDVDME-NIN 388
Query: 352 QLAAQDTAEVSADLGAS 368
+ A D S G S
Sbjct: 389 ESGAMDAKRSSLQRGES 405
>CGD|CAL0002815 [details] [associations]
symbol:orf19.864 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=IEA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 CGD:CAL0002815
SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0003723 GO:GO:0016070
Gene3D:1.25.40.180 EMBL:AACQ01000019 EMBL:AACQ01000018
eggNOG:NOG321770 KO:K14327 InterPro:IPR007193 Pfam:PF04050
RefSeq:XP_720987.1 RefSeq:XP_721108.1 ProteinModelPortal:Q5AHD2
STRING:Q5AHD2 GeneID:3637249 GeneID:3637338 KEGG:cal:CaO19.8483
KEGG:cal:CaO19.864 HOGENOM:HOG000093644 Uniprot:Q5AHD2
Length = 1034
Score = 389 (142.0 bits), Expect = 5.1e-35, Sum P(2) = 5.1e-35
Identities = 107/355 (30%), Positives = 180/355 (50%)
Query: 427 ETEKEKLKGVEGTNLDALLQRLPGCVSRDLIDQLTVEF--CYLNSKSNRKRLVRALFNVP 484
+ E + +G + A LQ++ S +L DQL VEF LN+K+ + R+++ F V
Sbjct: 369 DEESRSSQSRDGERIQAFLQKMENINSYEL-DQLVVEFNNLNLNNKATKNRIMK--FFVE 425
Query: 485 RTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIRNIRFIGE 544
S++ L YY+R + + D+ LI L++ F + + +++N +NI F E
Sbjct: 426 TASIDSLKYYTRFLKINEMNLFDLIEELINYLDKGFRSQLYQ-NRLNF----KNILFFVE 480
Query: 545 LCKFKIAPAGLVFSCL-KACLDDFTHHNIDVACNLLETCGRFLYRSPETSIRMANMLEIL 603
+ KFK+ P ++F + K L+ + +NID+ E GRFL P+ M M+E+L
Sbjct: 481 MIKFKMIPTHIIFHKIRKLTLNITSTNNIDILSVFYEHVGRFLLNDPDYKDLMREMIEML 540
Query: 604 MRLKNVKNLDPRHVTLVENAYYLCKPPERSARVSKVRP---PLHQYIRKLLFSDLDKSSI 660
NL + N + +PP + + +P P Q+I++L+ +L+ +S+
Sbjct: 541 RETSKRPNLKINDKLAINNLLLIVEPPTTKVKSLQTKPELSPKSQFIQRLIRVELNNTSL 600
Query: 661 EHVLRQLRKLPWS---DCESYLLKCFMKVHKGKYGQIHLIAS-LTAGLSRYHDEFAVAVV 716
V+ L+K+ +C +L C Y I +A+ L A S+Y + V V
Sbjct: 601 PLVVNLLKKIHMKQEKECCDTILDCLAHPELINYDNIPALAAVLEAYFSKYK-KIVVYTV 659
Query: 717 DEVLEEIRLGLELNDYGMQQRRLAHMRFLGELYNYEHVDSSVIFDTLYLILVFGH 771
D +E I GLELNDY M + R+A ++F+ E+YN+ ++ +I D LY IL FGH
Sbjct: 660 DTTIENIIRGLELNDYRMNRVRMAQVKFVAEMYNHRVINFKLINDLLYRILCFGH 714
Score = 71 (30.1 bits), Expect = 5.1e-35, Sum P(2) = 5.1e-35
Identities = 28/139 (20%), Positives = 56/139 (40%)
Query: 191 KKIFKKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEENSSSYEKLRKSYDH 250
+ + ++ F Y A+ E + Q+ ++ K G + EEN E + K ++
Sbjct: 230 RNVLQQIFTIYTRAIFETSVELKKRVHQVTEKSKKASIRTGRILEENQIELENVTKLFEK 289
Query: 251 LYRNVSSLAEALDMQPPVMPEDVHTTRVTSGEDASPASG-----KDSSVPEP----VWDD 301
++ LD+ P +P ++ E+ P + K S+ E VW+D
Sbjct: 290 FKSTSEFVSSILDI-P--LPNELQQ-HDQDKEEEEPTNTVVEVVKSKSMNEDDLNGVWED 345
Query: 302 EETRAFYECLPDLRAFVPA 320
+ + FY +P + + A
Sbjct: 346 VKEKNFYTVIPSVGELIEA 364
Score = 42 (19.8 bits), Expect = 5.6e-32, Sum P(2) = 5.6e-32
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 194 FKKAFH-TYYNAVQELLQAE-HTSLRQMENENAK-ILNAKGELSEENSSSYEKLRKS 247
F K FH Y++ ELLQ E L+Q+ + I EL + EK +K+
Sbjct: 209 FLKRFHHIIYDSNNELLQFEVRNVLQQIFTIYTRAIFETSVELKKRVHQVTEKSKKA 265
>RGD|1309178 [details] [associations]
symbol:Upf2 "UPF2 regulator of nonsense transcripts homolog
(yeast)" species:10116 "Rattus norvegicus" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0001889 "liver development"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0031100
"organ regeneration" evidence=IEA;ISO] [GO:0035145 "exon-exon
junction complex" evidence=IEA;ISO] InterPro:IPR003890
InterPro:IPR016024 SMART:SM00543 RGD:1309178 GO:GO:0005737
SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0031100 GO:GO:0001889
GO:GO:0003723 GO:GO:0035145 GeneTree:ENSGT00530000064318
OrthoDB:EOG4W3SM5 IPI:IPI00869515 Ensembl:ENSRNOT00000058070
OMA:ADRETHA Uniprot:D3ZT03
Length = 499
Score = 318 (117.0 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 88/280 (31%), Positives = 141/280 (50%)
Query: 63 ICSLLHQRYKDFSPCLIDGLLKVFFPGKSGEDLDADRNLKAMKKRSTLKLLLELYXXXXX 122
+CSL HQRY DF+P L+ + K F + E N+ K R+ L+ + EL
Sbjct: 224 LCSLFHQRYADFAPSLLQ-VWKKHFEARKEEKTP---NIT--KLRTDLRFIAELTIVGIF 277
Query: 123 XXXXXXXXXXKDLTSIEHLKDRDTTQTNLTLLASFARQ-GRIFLGL-P--LSGPGQEIYE 178
+ L SI + DR++ T+++++ SF R G GL P + ++
Sbjct: 278 TDKEGLSLIYEQLKSIINA-DRES-HTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNL 335
Query: 179 EFFKGLNITADQKKIFKKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEENS 238
F I+ ++++ F+ Y+ ++ + L+ +H L+ E +N +IL++KGELSE+
Sbjct: 336 NFPPSEIISPEKQQPFQNLLKEYFTSLTKHLKRDHRELQNTERQNRRILHSKGELSEDRH 395
Query: 239 SSYEKLRKSYDHLYRNVSSLAEALDMQPPVMPEDVHTTRVTS-GEDA-SPASGKDSSVPE 296
YE+ SY L N SLA+ LD P +P+D T G D +P + +
Sbjct: 396 KQYEEFAMSYQKLLANSQSLADLLDENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEG 455
Query: 297 PVWDDEETRAFYECLPDLRAFVPAVLLGEAEHKANEPSVK 336
+W+DE+ R FYE L DL+AFVPA+L + E N+ S K
Sbjct: 456 GIWEDEDARNFYENLIDLKAFVPAILFKDNEKSQNKDSSK 495
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.136 0.397 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 813 714 0.00084 121 3 11 22 0.38 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 16
No. of states in DFA: 619 (66 KB)
Total size of DFA: 363 KB (2181 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 65.83u 0.16s 65.99t Elapsed: 00:00:03
Total cpu time: 65.83u 0.16s 65.99t Elapsed: 00:00:03
Start: Tue May 21 16:44:28 2013 End: Tue May 21 16:44:31 2013