BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003522
(813 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9HAU5|RENT2_HUMAN Regulator of nonsense transcripts 2 OS=Homo sapiens GN=UPF2 PE=1
SV=1
Length = 1272
Score = 481 bits (1239), Expect = e-135, Method: Compositional matrix adjust.
Identities = 291/717 (40%), Positives = 413/717 (57%), Gaps = 50/717 (6%)
Query: 63 ICSLLHQRYKDFSPCLIDGLLKVFFPGKSGEDLDADRNLKAMKKRSTLKLLLELYFIGII 122
+CSL HQRY DF+P L+ K F E ++ K R+ L+ + EL +GI
Sbjct: 225 LCSLFHQRYADFAPSLLQVWKKHF------EARKEEKTPNITKLRTDLRFIAELTIVGIF 278
Query: 123 EDSSIFINIIKDLTSIEHLKDRDTTQTNLTLLASFARQ-GRIFLGL---PLSGPGQEIYE 178
D I + L +I + DR++ T+++++ SF R G GL + ++
Sbjct: 279 TDKEGLSLIYEQLKNIINA-DRES-HTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNL 336
Query: 179 EFFKGLNITADQKKIFKKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEENS 238
F I+ ++++ F+ Y+ ++ + L+ +H L+ E +N +IL++KGELSE+
Sbjct: 337 SFPPSEIISPEKQQPFQNLLKEYFTSLTKHLKRDHRELQNTERQNRRILHSKGELSEDRH 396
Query: 239 SSYEKLRKSYDHLYRNVSSLAEALDMQPPVMPEDVHTTRVTS-GEDA-SPASGKDSSVPE 296
YE+ SY L N SLA+ LD P +P+D T G D +P + +
Sbjct: 397 KQYEEFAMSYQKLLANSQSLADLLDENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEG 456
Query: 297 PVWDDEETRAFYECLPDLRAFVPAVLLGEAEHKANEPSVKPLEQPTDPASEPDQGQLAAQ 356
+W+DE+ R FYE L DL+AFVPA+L K NE S + E D
Sbjct: 457 GIWEDEDARNFYENLIDLKAFVPAILF-----KDNEKSCQNKESNKD------------- 498
Query: 357 DTAEVSADLGASPEGKSVEKGKDKEEKEKEKAKDPDKEKGKGKDKEEKDKEKAKDPDKEK 416
DT E S E K V D E + + + D + +G D+ A+D K+
Sbjct: 499 DTKEAKE----SKENKEVSSPDDLELELENLEINDDTLELEGGDE-------AEDLTKKL 547
Query: 417 GKEKDTERKVETEKEKLKGVEGTNLDALLQRLPGCVSRDLIDQLTVEFCY-LNSKSNRKR 475
E++ E + + LK + +DA LQ+LP CV+RDLID+ ++FC +N+K+NRK+
Sbjct: 548 LDEQEQEDEEASTGSHLKLI----VDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANRKK 603
Query: 476 LVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETK 535
LVRALF VPR L+LLP+Y+R+VATL CM DV+ L ML +F F + KKDQ+NIETK
Sbjct: 604 LVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINIETK 663
Query: 536 IRNIRFIGELCKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETSIR 595
+ +RFIGEL KFK+ CLK L DF+HH+I++AC LLETCGRFL+RSPE+ +R
Sbjct: 664 NKTVRFIGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESHLR 723
Query: 596 MANMLEILMRLKNVKNLDPRHVTLVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFSDL 655
+ +LE +MR K +LD R+VT+VENAYY C PP V K RPPL +Y+RKLL+ DL
Sbjct: 724 TSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDL 783
Query: 656 DKSSIEHVLRQLRKLPWSDCE--SYLLKCFMKVHKGKYGQIHLIASLTAGLSRYHDEFAV 713
K + E VLRQ+RKLPW D E Y++ C + + KY IH +A+L AGL Y ++ +
Sbjct: 784 SKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVGI 843
Query: 714 AVVDEVLEEIRLGLELNDYGMQQRRLAHMRFLGELYNYEHVDSSVIFDTLYLILVFG 770
VVD VLE+IRLG+E+N QRR++ +FLGELYNY V+S+VIF TLY FG
Sbjct: 844 HVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFG 900
>sp|O13824|NMD2_SCHPO Nonsense-mediated mRNA decay protein 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=upf2 PE=1 SV=1
Length = 1049
Score = 206 bits (524), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 187/330 (56%)
Query: 438 GTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKRLVRALFNVPRTSLELLPYYSRM 497
+ +D L +LP VS +L +++ +EF LN+K++R RL++AL +PRTS L+PYY R+
Sbjct: 442 SSRVDNFLLKLPSMVSLELTNEMALEFYDLNTKASRNRLIKALCTIPRTSSFLVPYYVRL 501
Query: 498 VATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIAPAGLVF 557
LS + S+ L+ F +I++K + +T++ +R+I EL KF++ P +VF
Sbjct: 502 ARILSQLSSEFSTSLVDHARHSFKRMIHRKAKHEYDTRLLIVRYISELTKFQLMPFHMVF 561
Query: 558 SCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETSIRMANMLEILMRLKNVKNLDPRHV 617
C K C+++FT +++V LLE+CGRFL R PET ++M + LE + + K L +
Sbjct: 562 ECYKLCINEFTPFDLEVLALLLESCGRFLLRYPETKLQMQSFLEAIQKKKLASALASQDQ 621
Query: 618 TLVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFSDLDKSSIEHVLRQLRKLPWSDCES 677
++ENA + PP+R VSK + +++ L+ L ++ L LRK W D
Sbjct: 622 LVLENALHFVNPPKRGIIVSKKKSLKEEFLYDLIQIRLKDDNVFPTLLLLRKFDWKDDYQ 681
Query: 678 YLLKCFMKVHKGKYGQIHLIASLTAGLSRYHDEFAVAVVDEVLEEIRLGLELNDYGMQQR 737
L M+V KY ++ +A L + L ++H EF + V+D+ LE + + +D+ +Q+
Sbjct: 682 ILYNTIMEVWNIKYNSLNALARLLSALYKFHPEFCIHVIDDTLESLFSAVNNSDHVEKQK 741
Query: 738 RLAHMRFLGELYNYEHVDSSVIFDTLYLIL 767
RLA RF+ EL +D I + L+ +L
Sbjct: 742 RLAQARFISELCVIHMLDVRAITNFLFHLL 771
>sp|P38798|NMD2_YEAST Nonsense-mediated mRNA decay protein 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NMD2 PE=1 SV=2
Length = 1089
Score = 181 bits (458), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 111/359 (30%), Positives = 189/359 (52%), Gaps = 14/359 (3%)
Query: 420 KDTERKVETEKEKLKGVEGTNLDALLQRLPGCVSRDLIDQLTVEF--CYLNSKSNRKRLV 477
K E ++ EK V N++ L +D+ID L+ + YL++K+ R R++
Sbjct: 355 KTVEESQSSKTEKDSNVNSKNINLFFTDLEMADCKDIIDDLSNRYWSSYLDNKATRNRIL 414
Query: 478 RALFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIR 537
+ F + LP YSR +AT S M ++ S I L+ F ++ +++N+ +
Sbjct: 415 K--FFMETQDWSKLPVYSRFIATNSKYMPEIVSEFINYLDNGFRSQLHS-NKINV----K 467
Query: 538 NIRFIGELCKFKIAPAGLVFSCLKACLDDF-THHNIDVACNLLETCGRFLYRSPETSIRM 596
NI F E+ KF++ P+ ++F ++ + +N+++ LLE G+FL PE M
Sbjct: 468 NIIFFSEMIKFQLIPSFMIFHKIRTLIMYMQVPNNVEILTVLLEHSGKFLLNKPEYKELM 527
Query: 597 ANMLEILMRLKNVKNLDPRHVTLVENAYYLCKPPE-RSARVS-KVRPPLHQYIRKLLFSD 654
M++++ KN + L+ + +EN L PP +S V+ K P Q+ R L+ S+
Sbjct: 528 EKMVQLIKDKKNDRQLNMNMKSALENIITLLYPPSVKSLNVTVKTITPEQQFYRILIRSE 587
Query: 655 LDKSSIEHVLRQLRKLPWSDC--ESYLLKCFMKVHKGKYGQIHLIASLTAGLSRYHDEFA 712
L +H+++ +RK W D + L F K HK Y I L+ + GL Y +F
Sbjct: 588 LSSLDFKHIVKLVRKAHWDDVAIQKVLFSLFSKPHKISYQNIPLLTKVLGGLYSYRRDFV 647
Query: 713 VAVVDEVLEEIRLGLELNDYGMQQRRLAHMRFLGELYNYEHVDSSVIFDTLYLILVFGH 771
+ +D+VLE I GLE+NDYG R++++R+L E++N+E + S V+ DT+Y I+ FGH
Sbjct: 648 IRCIDQVLENIERGLEINDYGQNMHRISNVRYLTEIFNFEMIKSDVLLDTIYHIIRFGH 706
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 68/318 (21%), Positives = 132/318 (41%), Gaps = 37/318 (11%)
Query: 37 KYIANIYIYTYTLLLGLWLT---LVYFLKICSLLHQRYKD-FSPCLIDGLLKVFFPGKSG 92
KY++ I + LL + ++ ++I S LHQR+ F+ L+ L+ F
Sbjct: 67 KYLSEIIVTVTECLLNVLNKNDDVIAAVEIISGLHQRFNGRFTSPLLGAFLQAF--ENPS 124
Query: 93 EDLDADRN--LKAMKKRSTLKLLLELYFIGIIEDSSIFINIIKDLTSIEHLKDRDTTQTN 150
D++++R+ + + + L++ ELY +G+ ++ I+ +I + + T + +
Sbjct: 125 VDIESERDELQRITRVKGNLRVFTELYLVGVFRT----LDDIESKDAIPNFLQKKTGRKD 180
Query: 151 LTLLASFARQ---GRIFLGL-------------PLSGPGQEIYEEFFKGLNITADQKKIF 194
LL S R+ + LG PL +++ + + +F
Sbjct: 181 -PLLFSILREILNYKFKLGFTTTIATAFIKKFAPLFRDDDNSWDDLIYDSKLKGALQSLF 239
Query: 195 KKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEENSSSYEKLRKSYDHLYRN 254
K + EL H + +++ E+ K G+L +E Y+KL + +
Sbjct: 240 KNFIDATFARATEL----HKKVNKLQREHQKCQIRTGKLRDEYVEEYDKLLPIFIRFKTS 295
Query: 255 VSSLAEALDMQPPVMPEDVHTTRVTSGEDASPASGKDSSVP-EPVWDDEETRAFYECLPD 313
+L E ++ +PE + E ASP P + +W++E+TR FYE LPD
Sbjct: 296 AITLGEFFKLE---IPELEGASNDDLKETASPMITNQILPPNQRLWENEDTRKFYEILPD 352
Query: 314 LRAFVPAVLLGEAEHKAN 331
+ V + E +N
Sbjct: 353 ISKTVEESQSSKTEKDSN 370
>sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
Length = 2876
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 49/67 (73%), Gaps = 4/67 (5%)
Query: 372 KSVEKGKDKE-EKEKEKAKDPDKEKGKGKDKE---EKDKEKAKDPDKEKGKEKDTERKVE 427
K+ EK +DKE EK +EK +D + EKG+ KD++ EKD++K +D D++K +EKD ++ E
Sbjct: 812 KAREKDQDKELEKGREKDQDKELEKGQEKDRDKVREKDRDKVRDKDRDKVREKDRDKVRE 871
Query: 428 TEKEKLK 434
+++KL+
Sbjct: 872 KDRDKLR 878
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 48/65 (73%), Gaps = 4/65 (6%)
Query: 372 KSVEKGKDKEE---KEKEKAKDPDKEKGKGKDKE-EKDKEKAKDPDKEKGKEKDTERKVE 427
K EK +DKE+ ++K+++KD +K + K +DKE EKD+EK +D + EKG+EKD ++++E
Sbjct: 740 KEQEKVRDKEQVKGRDKKRSKDLEKCREKDQDKELEKDREKNQDKELEKGREKDQDKELE 799
Query: 428 TEKEK 432
+EK
Sbjct: 800 KGREK 804
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 54/87 (62%), Gaps = 22/87 (25%)
Query: 370 EGKSVEKGKDKE-----EKEKEKAKDPDKEKGKGKDKE-----------EKDKEKAKDPD 413
+ K +EKG++K+ EK+++K +D D++K + KD++ EKD+EK ++ D
Sbjct: 830 QDKELEKGQEKDRDKVREKDRDKVRDKDRDKVREKDRDKVREKDRDKLREKDREKIRERD 889
Query: 414 KEKGKEKDTE------RKVETEKEKLK 434
++KG+EKD + R+ + EKE+LK
Sbjct: 890 RDKGREKDRDKEQVKTREKDQEKERLK 916
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 47/66 (71%), Gaps = 6/66 (9%)
Query: 372 KSVEKGKDKE-EKEKEKAKDPDKEKGKGKDKEEKDKEKAKDPDK----EKGKEKDTERKV 426
K EK +DKE EK +EK +D + EKG+ KD++ K+ EKA++ D+ EKG+EKD ++++
Sbjct: 776 KDREKNQDKELEKGREKDQDKELEKGREKDRD-KEMEKAREKDQDKELEKGREKDQDKEL 834
Query: 427 ETEKEK 432
E +EK
Sbjct: 835 EKGQEK 840
Score = 42.0 bits (97), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 48/65 (73%), Gaps = 2/65 (3%)
Query: 370 EGKSVEKGKDKEE-KEKEKAKDPDKEKGKGKDKE-EKDKEKAKDPDKEKGKEKDTERKVE 427
+G+ ++ KD E+ +EK++ K+ +K++ K +DKE EK +EK +D + EKG+EKD ++++E
Sbjct: 752 KGRDKKRSKDLEKCREKDQDKELEKDREKNQDKELEKGREKDQDKELEKGREKDRDKEME 811
Query: 428 TEKEK 432
+EK
Sbjct: 812 KAREK 816
Score = 40.0 bits (92), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 20/81 (24%)
Query: 372 KSVEKGKDKE-----EKEKEKAKDPDKEKGKGKDK-------EEK--DKEKAKDPDK--- 414
K +EKG+DKE EK++EK +D + EKG+ K++ +EK DKE+ K DK
Sbjct: 700 KELEKGRDKERVKDQEKDQEKGRDKEVEKGRYKERVKDRVKEQEKVRDKEQVKGRDKKRS 759
Query: 415 ---EKGKEKDTERKVETEKEK 432
EK +EKD ++++E ++EK
Sbjct: 760 KDLEKCREKDQDKELEKDREK 780
Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 12/75 (16%)
Query: 374 VEKGKDKEEKEKEKAKDPDKEKG------KGKDKE-----EKDKEKAKDPDKEKGKEKDT 422
VE +DKE+ E+EK D EKG KG+DKE EKD+EK +D + EKG+ K+
Sbjct: 676 VEHNRDKEQ-EQEKVGDKGLEKGREKELEKGRDKERVKDQEKDQEKGRDKEVEKGRYKER 734
Query: 423 ERKVETEKEKLKGVE 437
+ E+EK++ E
Sbjct: 735 VKDRVKEQEKVRDKE 749
Score = 38.9 bits (89), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 48/72 (66%), Gaps = 6/72 (8%)
Query: 372 KSVEKGKDKE---EKEKEKAKDPDKEKGKGKDKE-EKD--KEKAKDPDKEKGKEKDTERK 425
K +EKG++KE ++KE+ KD +K++ KG+DKE EK KE+ KD KE+ K +D E+
Sbjct: 692 KGLEKGREKELEKGRDKERVKDQEKDQEKGRDKEVEKGRYKERVKDRVKEQEKVRDKEQV 751
Query: 426 VETEKEKLKGVE 437
+K++ K +E
Sbjct: 752 KGRDKKRSKDLE 763
Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 8/69 (11%)
Query: 372 KSVEKGKDKE---EKEKEKAKDPDKEKGKGKDKE-----EKDKEKAKDPDKEKGKEKDTE 423
K VEKG+ KE ++ KE+ K DKE+ KG+DK+ EK +EK +D + EK +EK+ +
Sbjct: 724 KEVEKGRYKERVKDRVKEQEKVRDKEQVKGRDKKRSKDLEKCREKDQDKELEKDREKNQD 783
Query: 424 RKVETEKEK 432
+++E +EK
Sbjct: 784 KELEKGREK 792
Score = 37.7 bits (86), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 372 KSVEKGKDKE-EKEKEKAKDPDKEKGKGKDKEEKDKEKAKDPDKEKGKEKDTERKVETEK 430
K EK +DKE EK++EK +D + EKG+ KD+ DKE K +K++ KE + R+ + +K
Sbjct: 764 KCREKDQDKELEKDREKNQDKELEKGREKDQ---DKELEKGREKDRDKEMEKAREKDQDK 820
Query: 431 EKLKGVE 437
E KG E
Sbjct: 821 ELEKGRE 827
Score = 33.9 bits (76), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 10/54 (18%)
Query: 375 EKGKDK-EEKEKEKAKDPDKEKGKGKDKE-------EKDKEKA--KDPDKEKGK 418
EK +DK EK++EK ++ D++KG+ KD++ EKD+EK KD DKE+ K
Sbjct: 871 EKDRDKLREKDREKIRERDRDKGREKDRDKEQVKTREKDQEKERLKDRDKEREK 924
>sp|Q6BU84|CWC22_DEBHA Pre-mRNA-splicing factor CWC22 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=CWC22 PE=3 SV=2
Length = 637
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 103/219 (47%), Gaps = 17/219 (7%)
Query: 412 PDKEKGKEKDTERKVETEKEKLKGVEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKS 471
P K K + E+ E+ + ++ L + R + I ++ VE LN +
Sbjct: 23 PAKLKALQTKINNSSESTTEEYQVLQWEQLKRAINRQVNKCNVSNIREIVVELFKLNLQR 82
Query: 472 NRKRLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEF--NFLINKKDQ 529
+ L+R++ T L P Y+ ++A L++ + +V +++ L +F N++ NKK+
Sbjct: 83 GKGLLIRSIMKAQLTDLIFTPIYASLIAVLNSKIPEVGELILNRLLLQFRKNYIKNKKNC 142
Query: 530 MNIETKIRNIRFIGELCKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRS 589
I + FI L ++ L+ L+ L++ T+ +I++ ++ G++L
Sbjct: 143 ------ISSAIFIVHLINQRVCSEILILQILQLLLENPTNDSIEICVEIMNQVGKYL--- 193
Query: 590 PETSIRMANMLEILMRLKNV----KNLDPRHVTLVENAY 624
E S+ NM I RL+++ ++++ R L+EN +
Sbjct: 194 QENSVAANNM--IFNRLRSILHENEDINDRSQFLIENLF 230
>sp|P0CM96|CWC22_CRYNJ Pre-mRNA-splicing factor CWC22 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=CWC22 PE=3 SV=1
Length = 831
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 7/166 (4%)
Query: 425 KVETEKEKLKG-VEGTNLDALLQRLPGCVSR---DLIDQLTVEFCYLNSKSNRKRLVRAL 480
+ E K+K + + DAL + + G +++ I + E N R R++
Sbjct: 153 QAEAAKDKTSAEYQRISWDALKKSINGLINKVNISNIKHIVPELFGENLIRGRGLFARSV 212
Query: 481 FNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIRNIR 540
+SL P ++ +VA ++T + V +++ L +F + D+
Sbjct: 213 MRAQASSLPFTPVFAALVAIINTKLPQVGELVLIRLISQFRRAYKRNDKTVCHA---TST 269
Query: 541 FIGELCKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFL 586
FI LC +A + L CLD T +I+VA + G+FL
Sbjct: 270 FIAHLCNQYVAHEIVALQILLLCLDRPTDDSIEVAVGFMREVGQFL 315
>sp|P0CM97|CWC22_CRYNB Pre-mRNA-splicing factor CWC22 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=CWC22 PE=3
SV=1
Length = 831
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 7/166 (4%)
Query: 425 KVETEKEKLKG-VEGTNLDALLQRLPGCVSR---DLIDQLTVEFCYLNSKSNRKRLVRAL 480
+ E K+K + + DAL + + G +++ I + E N R R++
Sbjct: 153 QAEAAKDKTSAEYQRISWDALKKSINGLINKVNISNIKHIVPELFGENLIRGRGLFARSV 212
Query: 481 FNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIRNIR 540
+SL P ++ +VA ++T + V +++ L +F + D+
Sbjct: 213 MRAQASSLPFTPVFAALVAIINTKLPQVGELVLIRLISQFRRAYKRNDKTVCHA---TST 269
Query: 541 FIGELCKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFL 586
FI LC +A + L CLD T +I+VA + G+FL
Sbjct: 270 FIAHLCNQYVAHEIVALQILLLCLDRPTDDSIEVAVGFMREVGQFL 315
>sp|Q8SVY9|Y3G1_ENCCU Uncharacterized protein ECU03_1610 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=ECU03_1610 PE=1 SV=1
Length = 166
Score = 41.6 bits (96), Expect = 0.027, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 332 EPSVKPLEQPTDPASEPDQGQLAAQDTAEVSADLGASPEGKSVE---KGKDKEEKEKEKA 388
E S K E +D E + A + + + + S + K+ E KDK ++ E A
Sbjct: 3 EVSKKRCEHNSDSQCEGCKANDKACEARDKTKETAGSAKDKTKETAGSAKDKTKETAESA 62
Query: 389 KDPDKEK-GKGKDKEEKDKEKAKDPDKEK-GKEKD-TERKVETEKEKLKGVEGTNLD 442
KD KE G KDK ++ E AKD KE G KD T+ E+ K+K K G D
Sbjct: 63 KDKTKETAGSAKDKTKETAESAKDKTKETAGSAKDKTKETAESAKDKTKETAGNVRD 119
Score = 37.7 bits (86), Expect = 0.38, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 325 EAEHKANEPSVKPLEQPTDPASEPDQGQLAAQDTAEVSADLGASPEGKSVEKGKDKEEKE 384
+A KA E K E + + +A+D + +A+ ++ KDK ++
Sbjct: 21 KANDKACEARDKTKETAGSAKDKTKETAGSAKDKTKETAESAKDKTKETAGSAKDKTKET 80
Query: 385 KEKAKDPDKEK-GKGKDKEEKDKEKAKDPDKE 415
E AKD KE G KDK ++ E AKD KE
Sbjct: 81 AESAKDKTKETAGSAKDKTKETAESAKDKTKE 112
>sp|A7Y3K2|YCF1_IPOPU Putative membrane protein ycf1 OS=Ipomoea purpurea GN=ycf1-A PE=3
SV=1
Length = 2057
Score = 40.0 bits (92), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 354 AAQDTAEVSADLGASPEGKSVEKGKDKEEKEKEKAKDPDKEKGKGKDKEEKDKEKAKDPD 413
A D + + + E KS + K E + EK + D EK K E D EK + D
Sbjct: 1740 AKSDMKKGTKKSKTNSEKKSKTNSEKKSETDSEKKSETDSEK-----KSETDSEKKSETD 1794
Query: 414 KEKGKEKDTERKVETEKEK 432
EK E D+E+K ET+ EK
Sbjct: 1795 SEKKSETDSEKKSETDSEK 1813
Score = 37.4 bits (85), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 364 DLGASPEGKSVEKGKDKEEKEKEKAKDPDKEKGKGKDKEEKDKEKAKDPDKEKGKEKDTE 423
D S K +K K EK K K K + + K E D EK + D EK E D+E
Sbjct: 1738 DSAKSDMKKGTKKSKTNSEK-KSKTNSEKKSETDSEKKSETDSEKKSETDSEKKSETDSE 1796
Query: 424 RKVETEKEK 432
+K ET+ EK
Sbjct: 1797 KKSETDSEK 1805
>sp|Q6C8C5|CWC22_YARLI Pre-mRNA-splicing factor CWC22 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=CWC22 PE=3 SV=1
Length = 954
Score = 39.7 bits (91), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 8/162 (4%)
Query: 427 ETEKEKLKGVEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKRLVRALFNVPRT 486
+T KE + ++ NL + L VS I + E N R R++
Sbjct: 210 KTSKE-FQKIQFDNLKKAINSLVNKVSAQNIRDIAGEIFTHNLIRGRGLFCRSVMTAQSL 268
Query: 487 SLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEF--NFLINKKDQMNIETKIRNIRFIGE 544
+L P Y+ + A +++ + V +L++ L +F + N+KD + ++ F+
Sbjct: 269 ALPYTPVYACLTAIVNSKLPQVGELLVRRLILQFRRGYKRNQKD-----VCLSSVTFLAH 323
Query: 545 LCKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFL 586
LC + +A LV L L+ T H+++VA ++ G FL
Sbjct: 324 LCNYHVAHEVLVLQLLHLLLETPTDHSVEVAVAFIKESGAFL 365
>sp|P35611|ADDA_HUMAN Alpha-adducin OS=Homo sapiens GN=ADD1 PE=1 SV=2
Length = 737
Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 58/147 (39%), Gaps = 31/147 (21%)
Query: 254 NVSSLAEALDMQPPVMPEDVHTTRVTSGEDASPASGKDSSVPEPV-WDDEETRAFYECLP 312
N+ E + PP P H T P ++ VPEP DD + F LP
Sbjct: 589 NLDEAREQKEKSPPDQPAVPHPPPST------PIKLEEDLVPEPTTGDDSDAATFKPTLP 642
Query: 313 DLRAFVPAVLLG----EAEHKANEPSVKPLEQPTDPASEPDQGQLAAQDTAEVSADLGAS 368
DL P+ LG E E +A+ P P E PT+ + EP A D A V+ + S
Sbjct: 643 DLSPDEPSEALGFPMLEKEEEAHRPP-SPTEAPTEASPEP------APDPAPVAEEAAPS 695
Query: 369 PEGKSVEKGKDKEEKEKEKAKDPDKEK 395
+VE+G A DP +
Sbjct: 696 ----AVEEGA---------AADPGSDG 709
>sp|Q5BGP1|CWC22_EMENI Pre-mRNA-splicing factor cwc22 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cwc22
PE=3 SV=2
Length = 868
Score = 35.0 bits (79), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 49/244 (20%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 357 DTAEVSADLGASPEGKSVEKGKDKEEKEKEKAKDPDKEKGKGKDKEEKDKEKAKDPDKEK 416
DTA+ D+ +++E +E + E+ + ++++ K E++K+ A + EK
Sbjct: 50 DTADADRDVPRIDPERAIE----RERQLAERVRQYEQQEAARKPLTEEEKQAAAKAEYEK 105
Query: 417 -------GKEKDTER----KVETEKEKLKGVEGTNLDALLQRLPGCVSR---DLIDQLTV 462
G R + + + K + +AL + + G +++ I +
Sbjct: 106 LLNMRSGGTYIPPARLRALQAQITDKTSKEYQRMAWEALKKSINGLINKVNVSNIKYIVP 165
Query: 463 EFCYLNSKSNRKRLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNF 522
E N R R++ SL P Y+ M A ++T + V +L+ L +F
Sbjct: 166 ELFGENLVRGRGLFCRSIMKAQAASLPFTPIYAAMAAIVNTKLPQVGELLLSRLIIQFRK 225
Query: 523 LINKKDQMNIETKIRNIRFIGELCKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETC 582
+ D+ I + FI LC ++ L L L T ++++A L
Sbjct: 226 AFKRNDKA---VCISSTTFIAHLCNQQVVHEMLAAQILLLLLHKPTDDSVEIAVGLTREV 282
Query: 583 GRFL 586
G+ L
Sbjct: 283 GQHL 286
>sp|P11387|TOP1_HUMAN DNA topoisomerase 1 OS=Homo sapiens GN=TOP1 PE=1 SV=2
Length = 765
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 17/88 (19%)
Query: 356 QDTAEVSADLGASPEGKSVEKGKDKEEKEKEKAKDPDKEKGKGKDKEEKD---------- 405
+ +++ AD + K +K KD+E + KE K+ D+EK K + E KD
Sbjct: 7 HNDSQIEADFRLNDSHKHKDKHKDREHRHKEHKKEKDREKSKHSNSEHKDSEKKHKEKEK 66
Query: 406 -------KEKAKDPDKEKGKEKDTERKV 426
EK KD K++ KEK E KV
Sbjct: 67 TKHKDGSSEKHKDKHKDRDKEKRKEEKV 94
>sp|P41512|TOP1_XENLA DNA topoisomerase 1 OS=Xenopus laevis GN=top1 PE=2 SV=1
Length = 829
Score = 33.5 bits (75), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 20/80 (25%)
Query: 378 KDKEEKEKEKAKDPDKEKGKGKDKE--------------------EKDKEKAKDPDKEKG 417
KDKE + KE KD D+EK K + E EKD EK ++ D EK
Sbjct: 26 KDKEHRHKEHKKDKDREKSKHNNSEHRDPSEKKHKDKHKNNDKHREKDGEKHRERDGEKH 85
Query: 418 KEKDTERKVETEKEKLKGVE 437
++K+ E+ + EK K K +E
Sbjct: 86 RDKNGEKHRDGEKHKEKDIE 105
>sp|Q5RA10|ADDA_PONAB Alpha-adducin OS=Pongo abelii GN=ADD1 PE=2 SV=1
Length = 737
Score = 33.1 bits (74), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 15/87 (17%)
Query: 267 PVMPEDVHTTRVTSGEDASPASGKDSSVPEP-VWDDEETRAFYECLPDLRAFVPAVLLG- 324
P +P +T + ED VPEP DD + F LPDL P+ LG
Sbjct: 605 PAVPYPPPSTPIKLEEDL---------VPEPTTGDDSDAATFKPTLPDLSPDEPSEALGF 655
Query: 325 ---EAEHKANEPSVKPLEQPTDPASEP 348
E E +A+ P P E PT+ + EP
Sbjct: 656 PMLEKEEEAHRPP-SPTEAPTEASPEP 681
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 301,429,631
Number of Sequences: 539616
Number of extensions: 13558811
Number of successful extensions: 135353
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 1725
Number of HSP's that attempted gapping in prelim test: 81401
Number of HSP's gapped (non-prelim): 26643
length of query: 813
length of database: 191,569,459
effective HSP length: 126
effective length of query: 687
effective length of database: 123,577,843
effective search space: 84897978141
effective search space used: 84897978141
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)