Query 003522
Match_columns 813
No_of_seqs 138 out of 188
Neff 5.3
Searched_HMMs 29240
Date Tue Mar 26 17:46:29 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003522.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1572-1576//hhsearch_pdb/003522hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uw4_B UPF2, regulator of nons 1.0 1 1 432.0 15.1 166 640-810 1-171 (248)
2 1hu3_A EIF4GII; heat repeat, t 1.0 1 1 135.8 10.2 184 438-626 12-236 (260)
3 2vso_E Eukaryotic initiation f 1.0 1 1 118.8 10.4 184 438-625 37-275 (284)
4 1uw4_B UPF2, regulator of nons 1.0 1 1 113.2 14.1 173 456-630 20-219 (248)
5 3rk6_A Polyadenylate-binding p 1.0 1 1 85.9 7.7 184 439-624 21-231 (234)
6 2i2o_A EIF4G-like protein; pro 1.0 1 1 71.1 3.6 148 474-626 37-203 (224)
7 1h2v_C 80 kDa nuclear CAP bind 1.0 1 1 57.6 6.9 109 20-137 23-135 (771)
8 1hu3_A EIF4GII; heat repeat, t 1.0 1 1 57.5 12.5 56 730-804 138-193 (260)
9 2vso_E Eukaryotic initiation f 1.0 1 1 44.2 10.4 35 734-768 169-203 (284)
10 1h2v_C 80 kDa nuclear CAP bind 1.0 1 1 42.1 9.4 239 478-765 338-606 (771)
No 1
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=1.00 E-value=1 Score=432.04 Aligned_cols=166 Identities=46% Similarity=0.801 Sum_probs=158.5
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHH--HHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 9908899999988513845599999999719998736--89999873045455663999999999984003222025546
Q 003522 640 RPPLHQYIRKLLFSDLDKSSIEHVLRQLRKLPWSDCE--SYLLKCFMKVHKGKYGQIHLIASLTAGLSRYHDEFAVAVVD 717 (813)
Q Consensus 640 r~p~~~fir~Li~~~L~~~~~~~v~k~lrKl~W~d~~--~~l~~~~~~~~k~ky~nI~~lA~ll~~L~~~~~~f~v~vVD 717 (813)
|||+|+|||||||.+|++.++++|+++|||+||+|++ .|+++||++||+++|+|||++|+|+++|++|||+|+++|||
T Consensus 1 r~P~~~fir~Li~~~L~~~~~~~vlk~lrKl~W~D~e~~~~l~k~l~~~~~~ky~nI~~lA~ll~~L~~~~~~~~i~vVD 80 (248)
T 1uw4_B 1 RPPLQEYVRKLLYKDLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVGIHVVD 80 (248)
T ss_dssp CCHHHHHHHHHHHTTCSTTSHHHHHHHHHTSCTTSHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_conf 98699999999998725045999999998089996889999999962155355111999999999998648177653599
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEHH
Q ss_conf 68999885203799326779988979988743125688367999998885048899677323232236878641432004
Q 003522 718 EVLEEIRLGLELNDYGMQQRRLAHMRFLGELYNYEHVDSSVIFDTLYLILVFGHGTAETYWTHQKIVSGSGWLLLFLRLV 797 (813)
Q Consensus 718 ~vlE~Ir~gLE~N~~~~nQrRia~vkyLgELYny~lv~s~vIfd~Ly~ii~fGh~~~~~~~~~~~~~~~~~~~~fr~rl~ 797 (813)
+|+|+||+|||.|+|++||||||+||||||||||+||++++||++||+||+|||+++. ...+.|+|+||||||||
T Consensus 81 ~vlE~Ir~gLE~n~~~~nQrRia~vkyLgELYny~lv~s~vIf~~Ly~li~fg~~~~~-----~~~~~D~p~d~FRIrLv 155 (248)
T 1uw4_B 81 GVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVNPDG-----SPSSLDPPEHLFRIRLV 155 (248)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTCCTTS-----CCCSSSCTTCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC-----CCCCCCCCCCCHHHHHH
T ss_conf 9899999987438579999999999999999884578868999999999807998888-----88988997540259999
Q ss_pred HHHHH---HCCCCCCC
Q ss_conf 64521---01799987
Q 003522 798 VTTLT---EALPRGNL 810 (813)
Q Consensus 798 ~t~l~---~~~~~~~~ 810 (813)
||+|+ .||++|+.
T Consensus 156 CtLL~tcg~~f~~~~~ 171 (248)
T 1uw4_B 156 CTILDTCGQYFDRGSS 171 (248)
T ss_dssp HHHHHHHGGGCSSHHH
T ss_pred HHHHHHHHHHHCCHHH
T ss_conf 9999999987056256
No 2
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=1.00 E-value=1 Score=135.77 Aligned_cols=184 Identities=20% Similarity=0.352 Sum_probs=151.0
Q ss_pred CHHHHHHHHHCCCCCCHHHHHHHHHHHHH--CCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCC-CHH-------
Q ss_conf 11499999639899894578799999720--16903579999985115788888704799999973132-302-------
Q 003522 438 GTNLDALLQRLPGCVSRDLIDQLTVEFCY--LNSKSNRKRLVRALFNVPRTSLELLPYYSRMVATLSTC-MKD------- 507 (813)
Q Consensus 438 ~~~l~~fl~~Lp~~~nre~ID~~a~eF~~--lN~Ka~RkrL~k~l~~v~r~r~dlLP~YaRlvAtl~~~-~~D------- 507 (813)
..++.++|++|. .+.+|.++.++.. ++|...-+.+++.+|.-......-.|.||+|.+.++.. +|.
T Consensus 12 ~r~v~giLNKLT----~~nf~~i~~ql~~~~i~~~~~l~~vi~~if~kA~~ep~f~~~YA~Lc~~L~~~~~p~~~~~~~~ 87 (260)
T 1hu3_A 12 FRKVRSILNKLT----PQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKPGNT 87 (260)
T ss_dssp HHHHHHHHTCSS----CCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC--------
T ss_pred HHHHHHHHHHCC----HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 999999981088----7999999999997607999999999999999987181179999999999997007755577500
Q ss_pred --HHHHHHHHHHHHHHHHHHHCC------C-C--------------CC--------CHHHCEEEEEECCCCCCCCCHHHH
Q ss_conf --589999999999988450002------2-4--------------20--------000001454210003554570469
Q 003522 508 --VSSMLIQMLEEEFNFLINKKD------Q-M--------------NI--------ETKIRNIRFIGELCKFKIAPAGLV 556 (813)
Q Consensus 508 --i~~~l~~~L~~~Fr~~~~kk~------~-~--------------~~--------e~kiknirfi~EL~KF~lvP~~~i 556 (813)
+...|+.....+|........ + + .+ ...+.||+|||||.||++++...+
T Consensus 88 ~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~~k~r~lg~i~FIgeLy~~~~l~~~i~ 167 (260)
T 1hu3_A 88 VNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIM 167 (260)
T ss_dssp -CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSCHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 38999999999999833321124677776442025787888876668999999999998739999999972379989999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 9999987412798519889898742033455790117999999999998742059894588799975020
Q 003522 557 FSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETSIRMANMLEILMRLKNVKNLDPRHVTLVENAYYL 626 (813)
Q Consensus 557 f~~lk~ll~dfs~~nIeilc~llE~CGRfL~r~pet~~rm~~lLe~l~rkk~~~~L~~~~~~lieNa~y~ 626 (813)
++|++.|+.+++.++||.+|.||.+||++|-. +.++.+|..+++.|++.....+++.|...||++.+-.
T Consensus 168 ~~~l~~Ll~~~~e~~iE~l~~lL~tvG~~L~~-~~~~~~l~~~f~~l~~~~~~~~ls~Rirfmi~~l~dL 236 (260)
T 1hu3_A 168 HDCVVKLLKNHDEESLECLCRLLTTIGKDLDF-EKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDL 236 (260)
T ss_dssp HHHHHHHHHSCSHHHHHHHHHHHHHHHHHHCC-TTTHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99999981799889999999999999998817-5547889999999999985799988999999999999
No 3
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=1.00 E-value=1 Score=118.76 Aligned_cols=184 Identities=16% Similarity=0.304 Sum_probs=145.7
Q ss_pred CHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCH-HH-
Q ss_conf 1149999963989989457879999972016-------90357999998511578888870479999997313230-25-
Q 003522 438 GTNLDALLQRLPGCVSRDLIDQLTVEFCYLN-------SKSNRKRLVRALFNVPRTSLELLPYYSRMVATLSTCMK-DV- 508 (813)
Q Consensus 438 ~~~l~~fl~~Lp~~~nre~ID~~a~eF~~lN-------~Ka~RkrL~k~l~~v~r~r~dlLP~YaRlvAtl~~~~~-Di- 508 (813)
..++..+|.+| +.+.+|.++.++..++ +...-+.+++.+|.-......-.+.||+|.+.++..+| ++
T Consensus 37 ~r~vkgiLNKL----T~~nf~~i~~ql~~~~~~~~~~~~~~~l~~vi~~If~kA~~ep~fs~~YA~Lc~~l~~~l~~~i~ 112 (284)
T 2vso_E 37 ERKMKSLLNKL----TLEMFDAISSEILAIANISVWETNGETLKAVIEQIFLKACDEPHWSSMYAQLCGKVVKELNPDIT 112 (284)
T ss_dssp HHHHHHHHHSC----CSTTHHHHHHHHHHHHHGGGGCSBCHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHSCTTCC
T ss_pred HHHHHHHHHHC----CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999997108----87789999999999986502568389999999999999872721389999999999985686544
Q ss_pred -------------HHHHHHHHHHHHHHHHHHC-----CCC---------------CC-CHHHCEEEEEECCCCCCCCCHH
Q ss_conf -------------8999999999998845000-----224---------------20-0000014542100035545704
Q 003522 509 -------------SSMLIQMLEEEFNFLINKK-----DQM---------------NI-ETKIRNIRFIGELCKFKIAPAG 554 (813)
Q Consensus 509 -------------~~~l~~~L~~~Fr~~~~kk-----~~~---------------~~-e~kiknirfi~EL~KF~lvP~~ 554 (813)
...|+.....+|......+ +.. .. -.-+.||+|||||.||+|++..
T Consensus 113 ~e~~~~k~g~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~e~e~~~~e~~~~~~~k~r~lg~i~FIgeLyk~~~l~~~ 192 (284)
T 2vso_E 113 DETNEGKTGPKLVLHYLVARCHAEFDKGWTDKLPTNEDGTPLEPEMMSEEYYAAASAKRRGLGLVRFIGFLYRLNLLTGK 192 (284)
T ss_dssp BCC---CCTHHHHHHHHHHHHHHHHHHCCCSSCC------------CCTTHHHHHHHHHHHHHHHHHHHHHHHTTSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 44443431026999999999999982134431000114450125563368999999999976099999999864687689
Q ss_pred HHHHHHHHHHH----CCCCCHHHHHHHHHHHHCCCCCCCH--------HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 69999998741----2798519889898742033455790--------11799999999999874205989458879997
Q 003522 555 LVFSCLKACLD----DFTHHNIDVACNLLETCGRFLYRSP--------ETSIRMANMLEILMRLKNVKNLDPRHVTLVEN 622 (813)
Q Consensus 555 ~if~~lk~ll~----dfs~~nIeilc~llE~CGRfL~r~p--------et~~rm~~lLe~l~rkk~~~~L~~~~~~lieN 622 (813)
.+++|++.|+. +.+.++||.+|.||.+||..|-..+ +++..|..+++.|+......+++.|-.-||++
T Consensus 193 i~~~ci~~LL~~~~~~p~e~~iE~l~~lL~tvG~~Ld~~~~~~~~~~~~~~~~md~~f~~l~~l~~~~~ls~RirFml~d 272 (284)
T 2vso_E 193 MMFECFRRLMKDLTDSPSEETLESVVELLNTVGEQFETDSFRTGQATLEGSQLLDSLFGILDNIIQTAKISSRIKFKLID 272 (284)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTSCC--------CHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 99999999961678999889999999999999998826631011221023789999999999987478998999999999
Q ss_pred HHH
Q ss_conf 502
Q 003522 623 AYY 625 (813)
Q Consensus 623 a~y 625 (813)
.+-
T Consensus 273 lid 275 (284)
T 2vso_E 273 IKE 275 (284)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 4
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=1.00 E-value=1 Score=113.17 Aligned_cols=173 Identities=15% Similarity=0.332 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHC--CCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 787999997201--690357999998511578888870479999997313230258999999999998845000224200
Q 003522 456 LIDQLTVEFCYL--NSKSNRKRLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIE 533 (813)
Q Consensus 456 ~ID~~a~eF~~l--N~Ka~RkrL~k~l~~v~r~r~dlLP~YaRlvAtl~~~~~Di~~~l~~~L~~~Fr~~~~kk~~~~~e 533 (813)
.+|......--+ +....++-+++.|..+.+.+.+.+|..|.++|.|++|.|+++..+|+.+-++.|.-+...+.-.-.
T Consensus 20 ~~~~vlk~lrKl~W~D~e~~~~l~k~l~~~~~~ky~nI~~lA~ll~~L~~~~~~~~i~vVD~vlE~Ir~gLE~n~~~~nQ 99 (248)
T 1uw4_B 20 TTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQ 99 (248)
T ss_dssp SHHHHHHHHHTSCTTSHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHCCGGGHH
T ss_pred CHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 59999999980899968899999999621553551119999999999986481776535999899999987438579999
Q ss_pred HHHCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCH---------------HHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 00001454210003554570469999998741279851---------------988989874203345579011799999
Q 003522 534 TKIRNIRFIGELCKFKIAPAGLVFSCLKACLDDFTHHN---------------IDVACNLLETCGRFLYRSPETSIRMAN 598 (813)
Q Consensus 534 ~kiknirfi~EL~KF~lvP~~~if~~lk~ll~dfs~~n---------------Ieilc~llE~CGRfL~r~pet~~rm~~ 598 (813)
.|+.+|+|+|||-+++++....||++|-.++. |.|.+ |.++|+||++||.|+-+.. .+.+|..
T Consensus 100 rRia~vkyLgELYny~lv~s~vIf~~Ly~li~-fg~~~~~~~~~~D~p~d~FRIrLvCtLL~tcg~~f~~~~-~~kkLd~ 177 (248)
T 1uw4_B 100 RRISSAKFLGELYNYRMVESAVIFRTLYSFTS-FGVNPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGS-SKRKLDC 177 (248)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH-TTCCTTSCCCSSSCTTCCHHHHHHHHHHHHHGGGCSSHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHH-HHHHHHH
T ss_conf 99999999999988457886899999999980-799888888988997540259999999999998705625-6777999
Q ss_pred HHHHHHHH----------HHCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999987----------420598945887999750204887
Q 003522 599 MLEILMRL----------KNVKNLDPRHVTLVENAYYLCKPP 630 (813)
Q Consensus 599 lLe~l~rk----------k~~~~L~~~~~~lieNa~y~~~PP 630 (813)
+|--+++. .+...+..+-.-++...+-..+|.
T Consensus 178 fL~ffQ~Y~~~K~~~~~~~k~~plP~~vef~l~D~~~~lrp~ 219 (248)
T 1uw4_B 178 FLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMISDTLELLRPK 219 (248)
T ss_dssp HHHHHHHHHHHHHTSTTCCSSSCCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 999999999622233000147998787999999999985446
No 5
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=85.88 Aligned_cols=184 Identities=15% Similarity=0.203 Sum_probs=142.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCC---HH---
Q ss_conf 149999963989989457879999972-----0169035799999851157888887047999999731323---02---
Q 003522 439 TNLDALLQRLPGCVSRDLIDQLTVEFC-----YLNSKSNRKRLVRALFNVPRTSLELLPYYSRMVATLSTCM---KD--- 507 (813)
Q Consensus 439 ~~l~~fl~~Lp~~~nre~ID~~a~eF~-----~lN~Ka~RkrL~k~l~~v~r~r~dlLP~YaRlvAtl~~~~---~D--- 507 (813)
..+.++|.+|-. |.+..|.+..+|. ..++....+.+++.+|+-.-..+.--+.|||+.+.++..+ |.
T Consensus 21 r~v~~iLNkLT~--~p~~f~~l~~~i~~~~~~~~~~~~~L~~vi~lIfekAi~ep~fs~~YA~LC~~l~~~l~~~~~~~~ 98 (234)
T 3rk6_A 21 EYVQDFLNHLTE--QPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGN 98 (234)
T ss_dssp HHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHCCCCCTTCC
T ss_pred HHHHHHHHHCCC--CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 999999997468--865189999999999843799899999999999999986813289999999999986689974317
Q ss_pred HHHHHHHHHHHHHHHHH--HHCCCCCCCHHHCEEEEEECCCCC--------CCCCHHHHHHHHHHHHHC----CCCCHHH
Q ss_conf 58999999999998845--000224200000014542100035--------545704699999987412----7985198
Q 003522 508 VSSMLIQMLEEEFNFLI--NKKDQMNIETKIRNIRFIGELCKF--------KIAPAGLVFSCLKACLDD----FTHHNID 573 (813)
Q Consensus 508 i~~~l~~~L~~~Fr~~~--~kk~~~~~e~kiknirfi~EL~KF--------~lvP~~~if~~lk~ll~d----fs~~nIe 573 (813)
+...|+.....+|...- .+.+...-..-+.||+|||||.|= ++++..++..|++.|+.. -+..+||
T Consensus 99 Fr~lLL~rcQ~eFe~~~~~~~~d~~~k~r~lg~i~FIgELf~~l~~~~~~~~~l~e~I~~~ci~~Ll~~l~~~p~ee~vE 178 (234)
T 3rk6_A 99 FRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLI 178 (234)
T ss_dssp HHHHHHHHHHHHHTTHHHHTSSCHHHHHHHHHHHHHHHHHHHHCCEECTTSSEECCHHHHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 99999999999998667764210999899999999999998453024552200179999999999987514799848899
Q ss_pred HHHHHHHHHCCCCCCC--HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 8989874203345579--01179999999999987420598945887999750
Q 003522 574 VACNLLETCGRFLYRS--PETSIRMANMLEILMRLKNVKNLDPRHVTLVENAY 624 (813)
Q Consensus 574 ilc~llE~CGRfL~r~--pet~~rm~~lLe~l~rkk~~~~L~~~~~~lieNa~ 624 (813)
.+|.+|.+||+.|-.. +.++..|..+.+.|........++.|-+-||.+.+
T Consensus 179 ~l~~lL~tvG~~Ld~~~~~~~~~~md~~f~rl~~i~~~~~ls~Rirfml~dli 231 (234)
T 3rk6_A 179 CAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLV 231 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99999999999986001332378899999999999857899988999999999
No 6
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio}
Probab=1.00 E-value=1 Score=71.12 Aligned_cols=148 Identities=14% Similarity=0.187 Sum_probs=103.9
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHH------HHHHHHHHHHHHHHHH--HHHCCCCCCCHHHCEEEEEECC
Q ss_conf 9999985115788888704799999973132302------5899999999999884--5000224200000014542100
Q 003522 474 KRLVRALFNVPRTSLELLPYYSRMVATLSTCMKD------VSSMLIQMLEEEFNFL--INKKDQMNIETKIRNIRFIGEL 545 (813)
Q Consensus 474 krL~k~l~~v~r~r~dlLP~YaRlvAtl~~~~~D------i~~~l~~~L~~~Fr~~--~~kk~~~~~e~kiknirfi~EL 545 (813)
+.+++.+|+-.-....--+.|||+...+....++ +-..|+....++|..- .+++. -..-+.||+|||||
T Consensus 37 ~~vi~lIfeKAi~ep~fs~~YA~LC~~L~~~~~~~~g~~~Fr~~LLn~cQ~eFe~~ee~~~~~---k~r~lG~i~FIgEL 113 (224)
T 2i2o_A 37 EKVSSVIVDQSLKDQVFSREAGRICYTIVQAEAKQTNGSVFRRNLLNRLQQEFKAREETRKRS---TQEWVCLVSFICNI 113 (224)
T ss_dssp HHHHHHHHHHHTTCHHHHHHTHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTHHHHHHHC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHH---HHHHHHHHHHHHHH
T ss_conf 999999999997285229999999999998706442005899999999999987759999998---88886899999999
Q ss_pred CCC----CC--CC-HHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH-HHHCCCCCH
Q ss_conf 035----54--57-046999999874127---98519889898742033455790117999999999998-742059894
Q 003522 546 CKF----KI--AP-AGLVFSCLKACLDDF---THHNIDVACNLLETCGRFLYRSPETSIRMANMLEILMR-LKNVKNLDP 614 (813)
Q Consensus 546 ~KF----~l--vP-~~~if~~lk~ll~df---s~~nIeilc~llE~CGRfL~r~pet~~rm~~lLe~l~r-kk~~~~L~~ 614 (813)
-|= ++ .+ ...++.|++.|+.+. +-.+||.+|.+|.+||+.|-.... ..|..+++.|+. .....+++.
T Consensus 114 f~~l~~~~~~~~~l~~i~~~cl~~Ll~~~~~p~Ee~lEcl~~LL~tvG~~Ld~~~~--~~md~~f~~l~~~l~~~~~ls~ 191 (224)
T 2i2o_A 114 FDYLKVNNMPMVALVHPVYDCLFRLAQSDALKNEEEVDCLVLQLHRIGDQLEKMNV--QLMDELFNLLRDGFLLQEDLSS 191 (224)
T ss_dssp HHHSCBTTBCCGGGHHHHHHHHHHHTSHHHHTSHHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHCCCCCH
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHCCCCCCH
T ss_conf 96752068604789999999999986467999889999999999999899870568--9999999999999861769998
Q ss_pred HHHHHHHHHHHH
Q ss_conf 588799975020
Q 003522 615 RHVTLVENAYYL 626 (813)
Q Consensus 615 ~~~~lieNa~y~ 626 (813)
|-.-||.+.+-.
T Consensus 192 RiRfml~dlieL 203 (224)
T 2i2o_A 192 MGRLLLLEILEF 203 (224)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 7
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=1.00 E-value=1 Score=57.58 Aligned_cols=109 Identities=12% Similarity=0.173 Sum_probs=80.7
Q ss_pred CCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 98851243200101276659999999999852011----01589999999972152575399999996410899999741
Q 003522 20 DCTKFPFCIKNKSNCICKYIANIYIYTYTLLLGLW----LTLVYFLKICSLLHQRYKDFSPCLIDGLLKVFFPGKSGEDL 95 (813)
Q Consensus 20 ~~~~~~~~~~~~~~~l~ky~~ei~~~~~e~~~~~~----~dI~aaVeI~S~LHQRy~~Ft~~Ll~~l~~~~~~~~~~~~~ 95 (813)
+-.++--+|.++++.|...+..--+.+...+.+|. .-++.-..++..++-+..+|...+++.+...|.-.
T Consensus 23 ~~~s~~~~l~~L~~~l~~~l~~~r~~i~~~l~~~~~~~P~Kt~vyAaLVgllN~k~pe~G~~lv~~l~~~f~~~------ 96 (771)
T 1h2v_C 23 SACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKES------ 96 (771)
T ss_dssp CSSCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH------
T ss_conf 87637778999999998777765899999999999968873469999999997688569999999999999999------
Q ss_pred HHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 356555544433445655312242000570468999754210
Q 003522 96 DADRNLKAMKKRSTLKLLLELYFIGIIEDSSIFINIIKDLTS 137 (813)
Q Consensus 96 ekee~~risK~R~~LRll~EL~LVGV~~~~~~l~~~lk~l~~ 137 (813)
=+.-+-.+-|..+||++.|.-.+|++..+++ .++..++.
T Consensus 97 --l~~~~~~~~k~~lrFLa~L~n~~Vv~~~~il-~lL~~Ll~ 135 (771)
T 1h2v_C 97 --LKANNYNEAVYLVRFLSDLVNCHVIAAPSMV-AMFENFVS 135 (771)
T ss_dssp --HHTTCHHHHHHHHHHHHHHHHTTSBCHHHHH-HHHHHHHH
T ss_pred --HHCCCHHHHHHHHHHHHHHCCCCEECHHHHH-HHHHHHHH
T ss_conf --8735868899999999972237745577999-99999997
No 8
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=1.00 E-value=1 Score=57.52 Aligned_cols=56 Identities=18% Similarity=0.341 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHC
Q ss_conf 993267799889799887431256883679999988850488996773232322368786414320046452101
Q 003522 730 NDYGMQQRRLAHMRFLGELYNYEHVDSSVIFDTLYLILVFGHGTAETYWTHQKIVSGSGWLLLFLRLVVTTLTEA 804 (813)
Q Consensus 730 N~~~~nQrRia~vkyLgELYny~lv~s~vIfd~Ly~ii~fGh~~~~~~~~~~~~~~~~~~~~fr~rl~~t~l~~~ 804 (813)
...+..+|.++.|+|+|||||++|+...++++.+..++.- ++ + -.|.++|.+|.+|
T Consensus 138 ~~~~~k~r~lg~i~FIgeLy~~~~l~~~i~~~~l~~Ll~~--~~------------e-----~~iE~l~~lL~tv 193 (260)
T 1hu3_A 138 AKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKN--HD------------E-----ESLECLCRLLTTI 193 (260)
T ss_dssp CCSSHHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHS--CS------------H-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC--CC------------H-----HHHHHHHHHHHHH
T ss_conf 9999999987399999999723799899999999998179--98------------8-----9999999999999
No 9
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=1.00 E-value=1 Score=44.21 Aligned_cols=35 Identities=23% Similarity=0.534 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 67799889799887431256883679999988850
Q 003522 734 MQQRRLAHMRFLGELYNYEHVDSSVIFDTLYLILV 768 (813)
Q Consensus 734 ~nQrRia~vkyLgELYny~lv~s~vIfd~Ly~ii~ 768 (813)
..+|.++.|+|+|||||.+|+...++++.+-.++.
T Consensus 169 ~k~r~lg~i~FIgeLyk~~~l~~~i~~~ci~~LL~ 203 (284)
T 2vso_E 169 AKRRGLGLVRFIGFLYRLNLLTGKMMFECFRRLMK 203 (284)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 99997609999999986468768999999999961
No 10
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=1.00 E-value=1 Score=42.06 Aligned_cols=239 Identities=15% Similarity=0.236 Sum_probs=115.6
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCEEEEEECCCCCCCCCHHHHH
Q ss_conf 98511578888870479999997313230258999999999998845000224200000014542100035545704699
Q 003522 478 RALFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIAPAGLVF 557 (813)
Q Consensus 478 k~l~~v~r~r~dlLP~YaRlvAtl~~~~~Di~~~l~~~L~~~Fr~~~~kk~~~~~e~kiknirfi~EL~KF~lvP~~~if 557 (813)
..+|..|+.+ ...-||+.++--+.+.-|..... .+.+-|+.+++.-+.+..+..-+-+
T Consensus 338 ~el~~LP~p~-~~~iyY~sll~eLCkl~P~~~~~---v~~~ai~~lY~~i~~md~e~~~Rf~------------------ 395 (771)
T 1h2v_C 338 AELFQLPAPP-HIDVMYTTLLIELCKLQPGSLPQ---VLAQATEMLYMRLDTMNTTCVDRFI------------------ 395 (771)
T ss_dssp HHHTCSSCCS-SCHHHHHHHHHHHHHHSTTTHHH---HHHHHHHHHHHTGGGBCHHHHHHHH------------------
T ss_pred HHHHCCCCCC-HHHHHHHHHHHHHHHHCHHHHHH---HHHHHHHHHHHHHCCCCHHHHHHHH------------------
T ss_conf 9985389983-27789999999999748676899---9999999999762224789999999------------------
Q ss_pred HHHHHHHHCC--CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9999874127--98519889898742033455790117999999999998742059894588799975020488743454
Q 003522 558 SCLKACLDDF--THHNIDVACNLLETCGRFLYRSPETSIRMANMLEILMRLKNVKNLDPRHVTLVENAYYLCKPPERSAR 635 (813)
Q Consensus 558 ~~lk~ll~df--s~~nIeilc~llE~CGRfL~r~pet~~rm~~lLe~l~rkk~~~~L~~~~~~lieNa~y~~~PP~~~~~ 635 (813)
..+-..|.+| +-..-|- ..| ...|.+|++..-+-+++.+--.-... .|-+..+-..|...-||+....
T Consensus 396 dwFShhLSNF~f~W~W~eW-----~~~----~e~~~~~p~r~Fik~ll~k~~RLSy~-~rIk~~lP~~~~~llp~~p~p~ 465 (771)
T 1h2v_C 396 NWFSHHLSNFQFRWSWEDW-----SDC----LSQDPESPKPKFVREVLEKCMRLSYH-QRILDIVPPTFSALCPSNPTCI 465 (771)
T ss_dssp HHHHHHHTTTTTCCCGGGG-----GGG----TTSCTTSHHHHHHHHHHHHHHHTSCH-HHHHTTSCGGGGGGSCCCCCCC
T ss_pred HHHHHHHHCCCCCCCHHHH-----HHH----HCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHCCHHHHHHCCCCCCCC
T ss_conf 9999997467767048984-----875----31896582799999999999820269-9998748487896289989987
Q ss_pred --CCCCC---CCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCH----------HHHHHHHH----HCCCCCCCCCHHH
Q ss_conf --55579---90889999998851384559999999971999873----------68999987----3045455663999
Q 003522 636 --VSKVR---PPLHQYIRKLLFSDLDKSSIEHVLRQLRKLPWSDC----------ESYLLKCF----MKVHKGKYGQIHL 696 (813)
Q Consensus 636 --~~k~r---~p~~~fir~Li~~~L~~~~~~~v~k~lrKl~W~d~----------~~~l~~~~----~~~~k~ky~nI~~ 696 (813)
-..+. .|.+.--++|+-.--.+.+.+.|...|..++=... ....+.+| ....-- ++.+
T Consensus 466 f~y~~e~~~~~p~~~~a~~l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~~~~~i~v~~q~ll~~Gsk---S~SH 542 (771)
T 1h2v_C 466 YKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHLAAK---SFSH 542 (771)
T ss_dssp CTTSTTSCTTSTTHHHHHHHHHHHHTTCCHHHHHHHGGGCC-------------CCHHHHHHHHHHHHHHSTT---CHHH
T ss_pred CEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC---HHHH
T ss_conf 1007765567863699999999987369999999999965200122345423343229999999999995553---2999
Q ss_pred HHHHHHHHHCCCCCCH---------HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999999840032220---------25546689998852037993267799889799887431256883679999988
Q 003522 697 IASLTAGLSRYHDEFA---------VAVVDEVLEEIRLGLELNDYGMQQRRLAHMRFLGELYNYEHVDSSVIFDTLYL 765 (813)
Q Consensus 697 lA~ll~~L~~~~~~f~---------v~vVD~vlE~Ir~gLE~N~~~~nQrRia~vkyLgELYny~lv~s~vIfd~Ly~ 765 (813)
+++.|.||++-+- +.++++|. .|+.+|..+..+ .+--|-||++|+...|.+-+++
T Consensus 543 ---~~~~lery~~~lk~l~~~~~~q~~il~~v~----------~~W~~~~q~~~i-vidkll~~~iv~p~~Vv~w~f~ 606 (771)
T 1h2v_C 543 ---SFSALAKFHEVFKTLAESDEGKLHVLRVMF----------EVWRNHPQMIAV-LVDKMIRTQIVDCAAVANWIFS 606 (771)
T ss_dssp ---HHHHHHHTHHHHHHHTSSHHHHHHHHHHHH----------HHHTTCHHHHHH-HHHHHHHTTSSCHHHHHHHHTS
T ss_pred ---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH----------HHHHCCCCEEEH-HHHHHHHCCCCCHHHHHHHHCC
T ss_conf ---999999999999997478878999999999----------998329825740-9999973688787999999758
Done!