Query 003522
Match_columns 813
No_of_seqs 138 out of 188
Neff 5.3
Searched_HMMs 13730
Date Tue Mar 26 17:51:04 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003522.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1572-1576//hhsearch_scop/003522hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uw4b_ a.118.1.14 (B:) Regula 100.0 8.2E-36 6E-40 261.9 15.7 160 640-804 1-162 (248)
2 d1uw4b_ a.118.1.14 (B:) Regula 99.9 1.5E-21 1.1E-25 163.6 12.2 188 441-629 4-218 (248)
3 d1hu3a_ a.118.1.14 (A:) Eukary 99.5 2.1E-13 1.5E-17 107.6 11.0 182 439-625 13-235 (243)
4 d1h2vc1 a.118.1.14 (C:29-290) 98.9 1.7E-09 1.2E-13 80.7 7.2 133 470-606 34-177 (262)
5 d1hu3a_ a.118.1.14 (A:) Eukary 97.4 0.0022 1.6E-07 38.7 11.5 141 12-160 18-192 (243)
6 d1h2vc1 a.118.1.14 (C:29-290) 96.9 0.0018 1.3E-07 39.3 7.1 114 15-137 9-126 (262)
7 d3bqoa1 a.146.1.1 (A:62-265) T 13.4 23 0.0017 10.9 10.2 144 566-728 36-184 (204)
8 d1n3ka_ a.77.1.4 (A:) PEA-15 ( 12.3 25 0.0018 10.7 0.6 18 567-584 55-72 (130)
9 d1xhca3 d.87.1.1 (A:290-351) N 9.3 16 0.0012 12.1 -1.5 26 296-325 29-54 (62)
10 d1h6pa_ a.146.1.1 (A:) TRF2 {H 7.7 41 0.003 9.3 4.5 146 569-729 35-185 (203)
No 1
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=8.2e-36 Score=261.87 Aligned_cols=160 Identities=47% Similarity=0.806 Sum_probs=153.0
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHH--HHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 9908899999988513845599999999719998736--89999873045455663999999999984003222025546
Q 003522 640 RPPLHQYIRKLLFSDLDKSSIEHVLRQLRKLPWSDCE--SYLLKCFMKVHKGKYGQIHLIASLTAGLSRYHDEFAVAVVD 717 (813)
Q Consensus 640 r~p~~~fir~Li~~~L~~~~~~~v~k~lrKl~W~d~~--~~l~~~~~~~~k~ky~nI~~lA~ll~~L~~~~~~f~v~vVD 717 (813)
|||+|+||||||+.+|++.+++.|+++++|++|+|++ .+++++++++|+++|++++..|.+++.|++++|+|++.+||
T Consensus 1 r~p~~~flr~li~n~Ls~~n~~~i~~~i~kl~~~n~e~~~~li~~i~~~~~~~~~~i~~yA~l~a~L~~~~~~f~~~~id 80 (248)
T d1uw4b_ 1 RPPLQEYVRKLLYKDLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVGIHVVD 80 (248)
T ss_dssp CCHHHHHHHHHHHTTCSTTSHHHHHHHHHTSCTTSHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98089999999986478857999999999779998799989999986250286467999999999999872799999999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEHH
Q ss_conf 68999885203799326779988979988743125688367999998885048899677323232236878641432004
Q 003522 718 EVLEEIRLGLELNDYGMQQRRLAHMRFLGELYNYEHVDSSVIFDTLYLILVFGHGTAETYWTHQKIVSGSGWLLLFLRLV 797 (813)
Q Consensus 718 ~vlE~Ir~gLE~N~~~~nQrRia~vkyLgELYny~lv~s~vIfd~Ly~ii~fGh~~~~~~~~~~~~~~~~~~~~fr~rl~ 797 (813)
.+.|+++.|+|.|+++.+|||++.|+|+|||||++|+.+.+||+++|.+++|||+....+ .+.|+++|+|||+++
T Consensus 81 ~l~e~f~~~~e~~~~~~~~r~~~~v~figeLy~~~~v~~~~i~~~l~~Ll~~~~~~~~~~-----~~~d~~~d~~rIe~l 155 (248)
T d1uw4b_ 81 GVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVNPDGSP-----SSLDPPEHLFRIRLV 155 (248)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTCCTTSCC-----CSSSCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC-----CCCCCCCCHHHHHHH
T ss_conf 999999999987118899999989999999998745769999999999996578765555-----567987640579899
Q ss_pred HHHHHHC
Q ss_conf 6452101
Q 003522 798 VTTLTEA 804 (813)
Q Consensus 798 ~t~l~~~ 804 (813)
|++|.+|
T Consensus 156 ~~lL~t~ 162 (248)
T d1uw4b_ 156 CTILDTC 162 (248)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999997
No 2
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.86 E-value=1.5e-21 Score=163.62 Aligned_cols=188 Identities=14% Similarity=0.282 Sum_probs=154.6
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHH--HHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99999639-8998945787999997--20169035799999851157888887047999999731323025899999999
Q 003522 441 LDALLQRL-PGCVSRDLIDQLTVEF--CYLNSKSNRKRLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLE 517 (813)
Q Consensus 441 l~~fl~~L-p~~~nre~ID~~a~eF--~~lN~Ka~RkrL~k~l~~v~r~r~dlLP~YaRlvAtl~~~~~Di~~~l~~~L~ 517 (813)
++.|+.+| -+--|+..+|+++.+. ++.+++..++.|++.+++..+.+.+.+|+||+++|+|++++||++..+++.+.
T Consensus 4 ~~~flr~li~n~Ls~~n~~~i~~~i~kl~~~n~e~~~~li~~i~~~~~~~~~~i~~yA~l~a~L~~~~~~f~~~~id~l~ 83 (248)
T d1uw4b_ 4 LQEYVRKLLYKDLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVGIHVVDGVL 83 (248)
T ss_dssp HHHHHHHHHHTTCSTTSHHHHHHHHHTSCTTSHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999986478857999999999779998799989999986250286467999999999999872799999999999
Q ss_pred HHHHHHHHHCCCCCCCHHHCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCC--------------HHHHHHHHHHHHC
Q ss_conf 99988450002242000000145421000355457046999999874127985--------------1988989874203
Q 003522 518 EEFNFLINKKDQMNIETKIRNIRFIGELCKFKIAPAGLVFSCLKACLDDFTHH--------------NIDVACNLLETCG 583 (813)
Q Consensus 518 ~~Fr~~~~kk~~~~~e~kiknirfi~EL~KF~lvP~~~if~~lk~ll~dfs~~--------------nIeilc~llE~CG 583 (813)
++|+..+..++...-..++.||+|||||.||+++|...+|+|+..|+...+.. .||++|.||++||
T Consensus 84 e~f~~~~e~~~~~~~~r~~~~v~figeLy~~~~v~~~~i~~~l~~Ll~~~~~~~~~~~~~d~~~d~~rIe~l~~lL~t~G 163 (248)
T d1uw4b_ 84 EDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVNPDGSPSSLDPPEHLFRIRLVCTILDTCG 163 (248)
T ss_dssp HHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTCCTTSCCCSSSCTTCCHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999998711889999998999999999874576999999999999657876555556798764057989999999973
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHH----------HHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 34557901179999999999987----------42059894588799975020488
Q 003522 584 RFLYRSPETSIRMANMLEILMRL----------KNVKNLDPRHVTLVENAYYLCKP 629 (813)
Q Consensus 584 RfL~r~pet~~rm~~lLe~l~rk----------k~~~~L~~~~~~lieNa~y~~~P 629 (813)
++|- ++..+.+|..++..+++. .+...++.|-..||++.+-.-+|
T Consensus 164 ~~l~-~~~~~~~l~~~~~~fq~y~~~~~~~~~~~~~~~lp~ri~f~i~dll~lr~~ 218 (248)
T d1uw4b_ 164 QYFD-RGSSKRKLDCFLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMISDTLELLRP 218 (248)
T ss_dssp GGCS-SHHHHHHHHHHHHHHHHHHHHHHTSTTCCSSSCCCHHHHHHHHHHHHHHCT
T ss_pred HHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 8762-764131578999999999999999998743699889999999999999857
No 3
>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.48 E-value=2.1e-13 Score=107.62 Aligned_cols=182 Identities=19% Similarity=0.337 Sum_probs=145.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHH--CCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHH---------
Q ss_conf 1499999639899894578799999720--16903579999985115788888704799999973132302---------
Q 003522 439 TNLDALLQRLPGCVSRDLIDQLTVEFCY--LNSKSNRKRLVRALFNVPRTSLELLPYYSRMVATLSTCMKD--------- 507 (813)
Q Consensus 439 ~~l~~fl~~Lp~~~nre~ID~~a~eF~~--lN~Ka~RkrL~k~l~~v~r~r~dlLP~YaRlvAtl~~~~~D--------- 507 (813)
.++..+|.+|. .+.+|.+.-++.. +++.-.=+-++..+|+-.-....--|.||++.+.+...+++
T Consensus 13 r~v~~lLNKLt----~~n~~~i~~ei~~l~~~~~~~l~~~v~~I~~kai~e~~f~~~YA~Lc~~l~~~~~~~~~~~~~~~ 88 (243)
T d1hu3a_ 13 RKVRSILNKLT----PQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKPGNTV 88 (243)
T ss_dssp HHHHHHHTCSS----CCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC---------
T ss_pred HHHHHHHHHCC----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCH
T ss_conf 99999986299----99999999999998766899999999999999873863408999999999870686222555222
Q ss_pred -HHHHHHHHHHHHHHHHHHHCCC----------------------------CCC-CHHHCEEEEEECCCCCCCCCHHHHH
Q ss_conf -5899999999999884500022----------------------------420-0000014542100035545704699
Q 003522 508 -VSSMLIQMLEEEFNFLINKKDQ----------------------------MNI-ETKIRNIRFIGELCKFKIAPAGLVF 557 (813)
Q Consensus 508 -i~~~l~~~L~~~Fr~~~~kk~~----------------------------~~~-e~kiknirfi~EL~KF~lvP~~~if 557 (813)
+...|++.+.+.|..+...... ... ...+.+++|||||.+|++++...++
T Consensus 89 ~F~~~Ll~~~q~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~k~~~~g~i~figeLy~~~~v~~~~i~ 168 (243)
T d1hu3a_ 89 NFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMH 168 (243)
T ss_dssp CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHH
T ss_conf 89999999999999886654235676540001011417888877889999998888840049999999713643099999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99998741279851988989874203345579011799999999999874205989458879997502
Q 003522 558 SCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETSIRMANMLEILMRLKNVKNLDPRHVTLVENAYY 625 (813)
Q Consensus 558 ~~lk~ll~dfs~~nIeilc~llE~CGRfL~r~pet~~rm~~lLe~l~rkk~~~~L~~~~~~lieNa~y 625 (813)
.|++.++.+++.++||.+|.++.+||..| +.++.+.+|..+++.|+..++..+++.|-+-||.+..-
T Consensus 169 ~~l~~Ll~~~~e~~ie~l~~lL~~~G~~L-~~~~~~~~~~~~~~~l~~~~~~~~~s~Rirfml~~l~e 235 (243)
T d1hu3a_ 169 DCVVKLLKNHDEESLECLCRLLTTIGKDL-DFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVID 235 (243)
T ss_dssp HHHHHHHHSCSHHHHHHHHHHHHHHHHHH-CCTTTHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99998548998789999999999999999-53253888999999999998669988899999999999
No 4
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.90 E-value=1.7e-09 Score=80.72 Aligned_cols=133 Identities=16% Similarity=0.264 Sum_probs=102.4
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCE-EEEEECCCCC
Q ss_conf 035799999851157888887047999999731323025899999999999884500022420000001-4542100035
Q 003522 470 KSNRKRLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIRN-IRFIGELCKF 548 (813)
Q Consensus 470 Ka~RkrL~k~l~~v~r~r~dlLP~YaRlvAtl~~~~~Di~~~l~~~L~~~Fr~~~~kk~~~~~e~kikn-irfi~EL~KF 548 (813)
-..|+.+++.++.........+|+||.+|++++.-.|+++.++++++-..|+..+++.+.. +.|+ +|||++|+.+
T Consensus 34 ~~~~~~il~~l~~~~~~~P~k~~~yA~Lv~llN~~~~e~g~~~l~~~~~~f~~~l~~~~~~----~~~~llrFla~L~n~ 109 (262)
T d1h2vc1 34 PNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYN----EAVYLVRFLSDLVNC 109 (262)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHCCC
T ss_conf 9999999999999999685467999999999946867999999999999999999808889----999999999997447
Q ss_pred CCCCHHHHHHHHHHHHH-----CCCCCHHHHH-HHHHHH---HCCCCC-CCHHHHHHHHHHHHHHHHH
Q ss_conf 54570469999998741-----2798519889-898742---033455-7901179999999999987
Q 003522 549 KIAPAGLVFSCLKACLD-----DFTHHNIDVA-CNLLET---CGRFLY-RSPETSIRMANMLEILMRL 606 (813)
Q Consensus 549 ~lvP~~~if~~lk~ll~-----dfs~~nIeil-c~llE~---CGRfL~-r~pet~~rm~~lLe~l~rk 606 (813)
+|++...+|.+++.++. +......|-+ .+++.+ ||++|+ ++|+.-.++-.-++..+++
T Consensus 110 ~Vv~~~~i~~ll~~ll~~~~e~~~~~~~~d~~~~~vL~~LP~~g~~l~~~~~~~~~~ll~~i~~y~~~ 177 (262)
T d1h2vc1 110 HVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANTESYLKR 177 (262)
T ss_dssp TSBCHHHHHHHHHHHHHGGGCSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 87867689999999998776436875107899999999979989988753889999999999999983
No 5
>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.37 E-value=0.0022 Score=38.72 Aligned_cols=141 Identities=12% Similarity=0.161 Sum_probs=79.9
Q ss_pred HHHEEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC----------CCHHHHHHH
Q ss_conf 1024423998851243200101276659999999999852011015899999999721525----------753999999
Q 003522 12 IMFILVSDDCTKFPFCIKNKSNCICKYIANIYIYTYTLLLGLWLTLVYFLKICSLLHQRYK----------DFSPCLIDG 81 (813)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~ky~~ei~~~~~e~~~~~~~dI~aaVeI~S~LHQRy~----------~Ft~~Ll~~ 81 (813)
++=-|+-+|++....+|.++-.+-+.-+.+++..+++-...=..-....+.+|-.|+..+. +|...|+..
T Consensus 18 lLNKLt~~n~~~i~~ei~~l~~~~~~~l~~~v~~I~~kai~e~~f~~~YA~Lc~~l~~~~~~~~~~~~~~~~F~~~Ll~~ 97 (243)
T d1hu3a_ 18 ILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKPGNTVNFRKLLLNR 97 (243)
T ss_dssp HHTCSSCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC---------CHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 98629999999999999998766899999999999999873863408999999999870686222555222899999999
Q ss_pred HHHHCCCCCCC-----C-----------------CHHHHHHHHHHH--HHHHHHHHHHEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 96410899999-----7-----------------413565555444--33445655312242000570468999754210
Q 003522 82 LLKVFFPGKSG-----E-----------------DLDADRNLKAMK--KRSTLKLLLELYFIGIIEDSSIFINIIKDLTS 137 (813)
Q Consensus 82 l~~~~~~~~~~-----~-----------------~~ekee~~risK--~R~~LRll~EL~LVGV~~~~~~l~~~lk~l~~ 137 (813)
.+..|...... . ..|.+......| ....+||++|||..|+++. .++..++..++.
T Consensus 98 ~q~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~k~~~~g~i~figeLy~~~~v~~-~~i~~~l~~Ll~ 176 (243)
T d1hu3a_ 98 CQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTE-AIMHDCVVKLLK 176 (243)
T ss_dssp HHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHH-HHHHHHHHHHCC
T ss_conf 9999988665423567654000101141788887788999999888884004999999971364309-999999998548
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 01124667777415799999730
Q 003522 138 IEHLKDRDTTQTNLTLLASFARQ 160 (813)
Q Consensus 138 ~e~l~Dk~~~~~~l~il~sF~K~ 160 (813)
+. ...++-.+..+++.
T Consensus 177 -----~~--~e~~ie~l~~lL~~ 192 (243)
T d1hu3a_ 177 -----NH--DEESLECLCRLLTT 192 (243)
T ss_dssp -----SC--SHHHHHHHHHHHHH
T ss_pred -----CC--CHHHHHHHHHHHHH
T ss_conf -----99--87899999999999
No 6
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.88 E-value=0.0018 Score=39.34 Aligned_cols=114 Identities=12% Similarity=0.181 Sum_probs=83.3
Q ss_pred EEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 4423998851243200101276659999999999852011----015899999999721525753999999964108999
Q 003522 15 ILVSDDCTKFPFCIKNKSNCICKYIANIYIYTYTLLLGLW----LTLVYFLKICSLLHQRYKDFSPCLIDGLLKVFFPGK 90 (813)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~ky~~ei~~~~~e~~~~~~----~dI~aaVeI~S~LHQRy~~Ft~~Ll~~l~~~~~~~~ 90 (813)
-+.-.|..++..+|.++++.+...+.+-.+++.+.+..|. .-++.-..++..++.+..+|...+++.+...|--
T Consensus 9 rige~~~~s~~~~ie~L~~~l~~~l~~~~~~il~~l~~~~~~~P~k~~~yA~Lv~llN~~~~e~g~~~l~~~~~~f~~-- 86 (262)
T d1h2vc1 9 KVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKE-- 86 (262)
T ss_dssp TTTSSCSSCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH--
T ss_conf 971433101898999999999989999999999999999996854679999999999468679999999999999999--
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 99741356555544433445655312242000570468999754210
Q 003522 91 SGEDLDADRNLKAMKKRSTLKLLLELYFIGIIEDSSIFINIIKDLTS 137 (813)
Q Consensus 91 ~~~~~ekee~~risK~R~~LRll~EL~LVGV~~~~~~l~~~lk~l~~ 137 (813)
.. +...-.+-|..+||+++|+-.||++...++ .+++.++.
T Consensus 87 ---~l---~~~~~~~~~~llrFla~L~n~~Vv~~~~i~-~ll~~ll~ 126 (262)
T d1h2vc1 87 ---SL---KANNYNEAVYLVRFLSDLVNCHVIAAPSMV-AMFENFVS 126 (262)
T ss_dssp ---HH---HTTCHHHHHHHHHHHHHHHHTTSBCHHHHH-HHHHHHHH
T ss_pred ---HH---HHCCHHHHHHHHHHHHHHCCCCCCCHHHHH-HHHHHHHH
T ss_conf ---99---808889999999999997447878676899-99999998
No 7
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.41 E-value=23 Score=10.94 Aligned_cols=144 Identities=18% Similarity=0.232 Sum_probs=93.4
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH-----HHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 2798519889898742033455790117999999999998742059894588-----79997502048874345455579
Q 003522 566 DFTHHNIDVACNLLETCGRFLYRSPETSIRMANMLEILMRLKNVKNLDPRHV-----TLVENAYYLCKPPERSARVSKVR 640 (813)
Q Consensus 566 dfs~~nIeilc~llE~CGRfL~r~pet~~rm~~lLe~l~rkk~~~~L~~~~~-----~lieNa~y~~~PP~~~~~~~k~r 640 (813)
|| .+..+++-+++.. +.+.+..+.+|-.+.+.+.|.-.-.+||.+.. +-+|+|+...+--+ ++.
T Consensus 36 dF-r~~rdi~eall~~----~~~~~~~~~k~i~i~QfLsRI~eG~~LD~~Fd~~~~lTPLESAl~v~~~I~------~E~ 104 (204)
T d3bqoa1 36 DF-RRTRNSAEAIIHG----LSSLTACQLRTIYICQFLTRIAAGKTLDAQFENDERITPLESALMIWGSIE------KEH 104 (204)
T ss_dssp HH-HHHHHHHHHHHHT----CSCCCHHHHHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHTTSC------SCC
T ss_pred HH-HHHHHHHHHHHHC----CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH------HHH
T ss_conf 99-9999999999827----324674201378999999999717887872787877780899999999998------604
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 90889999998851384559999999971999873689999873045455663999999999984003222025546689
Q 003522 641 PPLHQYIRKLLFSDLDKSSIEHVLRQLRKLPWSDCESYLLKCFMKVHKGKYGQIHLIASLTAGLSRYHDEFAVAVVDEVL 720 (813)
Q Consensus 641 ~p~~~fir~Li~~~L~~~~~~~v~k~lrKl~W~d~~~~l~~~~~~~~k~ky~nI~~lA~ll~~L~~~~~~f~v~vVD~vl 720 (813)
.+++.=||+||. +--|..+++|=..++.+..+-+.|.++.--++ -=.-|+.++..=..|||-+-----+...
T Consensus 105 d~l~e~i~~lik-------~qAV~vCmekg~fk~A~eilkr~f~~~~~~~~-lr~~L~~iI~~Kd~~H~~lqnFSy~~~~ 176 (204)
T d3bqoa1 105 DKLHEEIQNLIK-------IQAIAVCMENGNFKEAEEVFERIFGDPNSHMP-FKSKLLMIISQKDTFHSFFQHFSYNHMM 176 (204)
T ss_dssp CHHHHHHHHHHH-------HHHHHHHHHTTCHHHHHHHHHHHC-----CCT-THHHHHHHHHTTCTTCHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHCCCCCHHHHHCCHHHHH
T ss_conf 435999999999-------99999999825457899999998569987648-9999999987028776799854799999
Q ss_pred HHHHHHHC
Q ss_conf 99885203
Q 003522 721 EEIRLGLE 728 (813)
Q Consensus 721 E~Ir~gLE 728 (813)
+.|-.=+|
T Consensus 177 ~ki~~fv~ 184 (204)
T d3bqoa1 177 EKIKSYVN 184 (204)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
No 8
>d1n3ka_ a.77.1.4 (A:) PEA-15 (phosphoprotein enriched in astrocytes 15 kDa) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=12.33 E-value=25 Score=10.72 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=9.4
Q ss_pred CCCCHHHHHHHHHHHHCC
Q ss_conf 798519889898742033
Q 003522 567 FTHHNIDVACNLLETCGR 584 (813)
Q Consensus 567 fs~~nIeilc~llE~CGR 584 (813)
.+..|.+.+..+|+.+||
T Consensus 55 L~~~nl~~L~~lL~~i~R 72 (130)
T d1n3ka_ 55 LDKDNLSYIEHIFEISRR 72 (130)
T ss_dssp CCSSCCHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHCCC
T ss_conf 886318999999998590
No 9
>d1xhca3 d.87.1.1 (A:290-351) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}
Probab=9.31 E-value=16 Score=12.11 Aligned_cols=26 Identities=31% Similarity=0.676 Sum_probs=19.3
Q ss_pred CCCCCCHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 999998101100124532111110232201
Q 003522 296 EPVWDDEETRAFYECLPDLRAFVPAVLLGE 325 (813)
Q Consensus 296 ~~iWeDEEtR~FYE~LpDL~~~VP~~Ll~~ 325 (813)
.|-|=||+|+.||++ ...|-+++|++
T Consensus 29 ~G~Wid~~tK~Fy~d----~KiiGaVV~~D 54 (62)
T d1xhca3 29 EGKWIEDNTKVFYEN----GKIIGAVVFND 54 (62)
T ss_dssp CEEEEETTEEEEC---------CEEEEESC
T ss_pred CCEEECCCCEEEEEC----CCEEEEEEEHH
T ss_conf 611202113266667----95889999634
No 10
>d1h6pa_ a.146.1.1 (A:) TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.68 E-value=41 Score=9.28 Aligned_cols=146 Identities=16% Similarity=0.096 Sum_probs=94.3
Q ss_pred CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH-----HHHHHHHHHCCCCCCCCCCCCCCCCH
Q ss_conf 8519889898742033455790117999999999998742059894588-----79997502048874345455579908
Q 003522 569 HHNIDVACNLLETCGRFLYRSPETSIRMANMLEILMRLKNVKNLDPRHV-----TLVENAYYLCKPPERSARVSKVRPPL 643 (813)
Q Consensus 569 ~~nIeilc~llE~CGRfL~r~pet~~rm~~lLe~l~rkk~~~~L~~~~~-----~lieNa~y~~~PP~~~~~~~k~r~p~ 643 (813)
.+..+++-+++-. .++.+..+.+|-...+.+.|.-.-++||.+.. +-+|+|+..-+--++- .....++
T Consensus 35 ~~~rdi~eall~~----~~~~~~~~~kti~i~QfL~RI~eG~~LD~~Fd~~~~~TPLESAl~v~~~I~~E---~~~~~~l 107 (203)
T d1h6pa_ 35 RQIRDIMQALLVR----PLGKEHTVSRLLRVMQCLSRIEEGENLDCSFDMEAELTPLESAINVLEMIKTE---FTLTEAV 107 (203)
T ss_dssp HHHHHHHHHHTTS----CCC----CHHHHHHHHHHHHHHTTTCC--CCCTTCSSCHHHHHHHHHHHHHHH---TTCCHHH
T ss_pred HHHHHHHHHHHHC----CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---CCCCHHH
T ss_conf 9999999999827----42455310358899999999981888777267888878089999999999985---1652567
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 89999998851384559999999971999873689999873045455663999999999984003222025546689998
Q 003522 644 HQYIRKLLFSDLDKSSIEHVLRQLRKLPWSDCESYLLKCFMKVHKGKYGQIHLIASLTAGLSRYHDEFAVAVVDEVLEEI 723 (813)
Q Consensus 644 ~~fir~Li~~~L~~~~~~~v~k~lrKl~W~d~~~~l~~~~~~~~k~ky~nI~~lA~ll~~L~~~~~~f~v~vVD~vlE~I 723 (813)
++=|++||. .-.|+-+++|=.++..+..+-+.|.++.--++ -=.-|+.++..=..|||-+-----+...+.|
T Consensus 108 ~e~i~~lik-------~qaV~VCmekg~Fk~A~eil~r~f~~~~~~~~-lr~kL~~II~~Kd~~H~~lq~FSy~~~~~kI 179 (203)
T d1h6pa_ 108 VESSRKLVK-------EAAVIICIKNKEFEKASKILKKHMSKDPTTQK-LRNDLLNIIREKNLAHPVIQNFSYETFQQKM 179 (203)
T ss_dssp HHHHHHHHH-------HHHHHHHHHTTCHHHHHHHHHHHC----------CHHHHHHHHHTTTCTTSSCCCCHHHHHHHH
T ss_pred HHHHHHHHH-------HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHCCCCCHHHHHCCHHHHHHHH
T ss_conf 899999999-------99999999706618899999998468988718-9999999997028775899864799999999
Q ss_pred HHHHCC
Q ss_conf 852037
Q 003522 724 RLGLEL 729 (813)
Q Consensus 724 r~gLE~ 729 (813)
-.=+|.
T Consensus 180 ~~fv~~ 185 (203)
T d1h6pa_ 180 LRFLES 185 (203)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
Done!