Query 003523
Match_columns 813
No_of_seqs 575 out of 3582
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 01:03:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003523.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003523hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02270 phospholipase D alpha 100.0 1E-188 2E-193 1612.5 73.8 789 1-800 1-805 (808)
2 PLN03008 Phospholipase D delta 100.0 6E-186 1E-190 1586.9 73.3 771 4-800 10-865 (868)
3 PLN02352 phospholipase D epsil 100.0 4E-175 1E-179 1498.3 70.1 743 3-800 5-755 (758)
4 KOG1329 Phospholipase D1 [Lipi 100.0 3E-151 6E-156 1292.3 56.9 735 4-806 72-857 (887)
5 PLN02866 phospholipase D 100.0 1.8E-93 4E-98 834.7 49.6 607 58-778 213-1056(1068)
6 PRK12452 cardiolipin synthetas 100.0 7.1E-49 1.5E-53 451.6 32.6 345 162-714 133-478 (509)
7 PRK01642 cls cardiolipin synth 100.0 1.9E-47 4.2E-52 439.2 34.4 345 162-716 109-454 (483)
8 PRK11263 cardiolipin synthase 100.0 4.3E-47 9.3E-52 425.2 32.5 342 164-718 3-344 (411)
9 PHA02820 phospholipase-D-like 100.0 2.2E-35 4.8E-40 332.1 31.7 343 199-714 26-378 (424)
10 COG1502 Cls Phosphatidylserine 100.0 1.5E-34 3.2E-39 330.7 31.8 334 166-693 57-393 (438)
11 PRK09428 pssA phosphatidylseri 100.0 4.4E-33 9.6E-38 314.3 31.9 341 163-693 20-394 (451)
12 PHA03003 palmytilated EEV memb 100.0 6.9E-33 1.5E-37 308.3 30.7 331 199-715 31-362 (369)
13 cd04015 C2_plant_PLD C2 domain 99.9 4.4E-27 9.5E-32 231.4 16.3 134 2-136 1-158 (158)
14 PF12357 PLD_C: Phospholipase 99.9 2E-25 4.4E-30 184.1 7.1 73 721-794 2-74 (74)
15 cd04016 C2_Tollip C2 domain pr 99.9 3.3E-24 7E-29 201.0 15.1 119 7-135 1-121 (121)
16 cd04013 C2_SynGAP_like C2 doma 99.9 3.1E-23 6.8E-28 199.6 15.5 125 6-142 9-145 (146)
17 cd08379 C2D_MCTP_PRT_plant C2 99.9 7.6E-22 1.6E-26 186.2 14.7 115 9-131 1-125 (126)
18 cd08682 C2_Rab11-FIP_classI C2 99.9 5.5E-21 1.2E-25 181.1 13.7 117 10-134 1-126 (126)
19 cd08400 C2_Ras_p21A1 C2 domain 99.8 1.6E-20 3.6E-25 177.9 15.8 120 7-137 3-124 (126)
20 cd04042 C2A_MCTP_PRT C2 domain 99.8 2E-20 4.3E-25 176.0 15.8 119 10-137 2-121 (121)
21 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 3.5E-20 7.5E-25 174.4 14.1 119 10-135 2-121 (121)
22 cd04019 C2C_MCTP_PRT_plant C2 99.8 6.3E-20 1.4E-24 178.9 14.7 122 9-137 1-133 (150)
23 cd08681 C2_fungal_Inn1p-like C 99.8 4.3E-20 9.3E-25 172.8 12.4 117 8-135 1-118 (118)
24 cd04014 C2_PKC_epsilon C2 doma 99.8 4.5E-19 9.8E-24 169.4 15.3 123 5-137 1-130 (132)
25 cd08678 C2_C21orf25-like C2 do 99.8 8.7E-19 1.9E-23 166.1 14.9 121 10-139 1-123 (126)
26 cd04022 C2A_MCTP_PRT_plant C2 99.8 6.4E-19 1.4E-23 167.2 13.9 120 9-137 1-127 (127)
27 cd08378 C2B_MCTP_PRT_plant C2 99.8 5.6E-19 1.2E-23 166.2 13.3 113 10-136 2-120 (121)
28 cd08391 C2A_C2C_Synaptotagmin_ 99.8 9.2E-19 2E-23 164.2 13.6 120 8-135 1-121 (121)
29 cd04044 C2A_Tricalbin-like C2 99.8 1.1E-18 2.4E-23 164.4 13.6 121 8-137 2-124 (124)
30 PRK05443 polyphosphate kinase; 99.8 1.4E-17 3E-22 196.3 25.2 270 197-693 346-632 (691)
31 cd04036 C2_cPLA2 C2 domain pre 99.8 2.2E-18 4.8E-23 161.6 14.5 113 10-135 2-117 (119)
32 cd08376 C2B_MCTP_PRT C2 domain 99.8 3.3E-18 7.2E-23 159.5 15.5 113 9-136 1-115 (116)
33 cd08377 C2C_MCTP_PRT C2 domain 99.8 3.1E-18 6.7E-23 160.3 14.9 118 8-136 1-119 (119)
34 cd08395 C2C_Munc13 C2 domain t 99.8 1.6E-18 3.5E-23 162.2 12.7 101 9-117 1-112 (120)
35 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 2.8E-18 6E-23 161.5 14.3 118 9-134 1-120 (121)
36 cd04024 C2A_Synaptotagmin-like 99.8 3.5E-18 7.6E-23 162.0 14.0 122 8-135 1-128 (128)
37 KOG1030 Predicted Ca2+-depende 99.8 1.2E-18 2.6E-23 167.3 9.9 96 5-109 3-100 (168)
38 cd08677 C2A_Synaptotagmin-13 C 99.8 2.1E-18 4.5E-23 159.7 10.2 100 6-115 12-118 (118)
39 TIGR03705 poly_P_kin polyphosp 99.8 3.7E-17 8.1E-22 191.6 23.1 267 197-693 337-623 (672)
40 cd08685 C2_RGS-like C2 domain 99.8 2.6E-18 5.7E-23 161.1 10.3 102 6-115 10-119 (119)
41 cd08373 C2A_Ferlin C2 domain f 99.8 1.2E-17 2.6E-22 158.5 14.8 116 14-141 2-121 (127)
42 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 9.6E-18 2.1E-22 160.3 13.7 120 9-136 1-133 (133)
43 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 1.4E-17 3.1E-22 157.0 13.9 118 9-134 1-123 (123)
44 cd08381 C2B_PI3K_class_II C2 d 99.7 9.5E-18 2.1E-22 158.1 11.7 101 7-115 12-121 (122)
45 cd04051 C2_SRC2_like C2 domain 99.7 8.1E-18 1.8E-22 159.1 11.0 114 9-131 1-125 (125)
46 cd08375 C2_Intersectin C2 doma 99.7 2.8E-17 6.1E-22 157.8 14.8 114 8-135 15-135 (136)
47 cd04050 C2B_Synaptotagmin-like 99.7 1.4E-17 3E-22 152.8 11.8 99 9-117 1-102 (105)
48 cd04028 C2B_RIM1alpha C2 domai 99.7 1.9E-17 4E-22 160.1 12.9 107 6-118 27-139 (146)
49 cd08394 C2A_Munc13 C2 domain f 99.7 2.2E-17 4.8E-22 154.3 12.5 98 8-117 2-101 (127)
50 cd08688 C2_KIAA0528-like C2 do 99.7 1.9E-17 4.1E-22 153.2 11.3 101 10-117 1-109 (110)
51 cd08387 C2A_Synaptotagmin-8 C2 99.7 2.9E-17 6.3E-22 155.1 12.1 103 7-116 15-123 (124)
52 cd04029 C2A_SLP-4_5 C2 domain 99.7 3.3E-17 7.3E-22 155.1 12.4 105 6-116 13-125 (125)
53 cd04046 C2_Calpain C2 domain p 99.7 9.7E-17 2.1E-21 152.1 15.4 121 7-137 2-123 (126)
54 cd08385 C2A_Synaptotagmin-1-5- 99.7 5.5E-17 1.2E-21 153.2 12.7 104 6-116 14-123 (124)
55 cd04010 C2B_RasA3 C2 domain se 99.7 6.1E-17 1.3E-21 157.3 12.8 104 9-121 1-126 (148)
56 cd04045 C2C_Tricalbin-like C2 99.7 5.5E-17 1.2E-21 152.5 12.1 104 8-119 1-105 (120)
57 cd08393 C2A_SLP-1_2 C2 domain 99.7 4E-17 8.7E-22 154.5 10.8 103 7-116 14-125 (125)
58 cd08383 C2A_RasGAP C2 domain ( 99.7 1.4E-16 3.1E-21 148.5 14.5 113 9-135 1-117 (117)
59 cd08382 C2_Smurf-like C2 domai 99.7 8.8E-17 1.9E-21 151.8 12.9 116 10-133 2-122 (123)
60 cd04052 C2B_Tricalbin-like C2 99.7 5.8E-17 1.3E-21 150.2 11.4 99 33-138 11-111 (111)
61 cd04043 C2_Munc13_fungal C2 do 99.7 2.6E-16 5.7E-21 148.9 14.8 114 9-137 2-122 (126)
62 cd04041 C2A_fungal C2 domain f 99.7 6.7E-17 1.5E-21 149.7 10.3 99 8-116 1-107 (111)
63 cd04040 C2D_Tricalbin-like C2 99.7 1.9E-16 4.1E-21 147.4 13.1 112 10-131 1-114 (115)
64 cd04018 C2C_Ferlin C2 domain t 99.7 7.1E-17 1.5E-21 157.2 10.4 104 9-115 1-115 (151)
65 cd04039 C2_PSD C2 domain prese 99.7 1.2E-16 2.7E-21 147.2 11.0 96 8-107 1-99 (108)
66 cd04027 C2B_Munc13 C2 domain s 99.7 2.5E-16 5.5E-21 149.5 13.2 114 9-133 2-127 (127)
67 cd08388 C2A_Synaptotagmin-4-11 99.7 3.5E-16 7.5E-21 148.7 13.0 104 7-116 15-127 (128)
68 cd04031 C2A_RIM1alpha C2 domai 99.7 2.6E-16 5.7E-21 148.6 12.0 102 7-116 15-125 (125)
69 cd08690 C2_Freud-1 C2 domain f 99.7 5.7E-16 1.2E-20 150.9 14.6 118 10-137 4-138 (155)
70 cd08392 C2A_SLP-3 C2 domain fi 99.7 2.2E-16 4.7E-21 150.0 11.1 102 7-115 14-127 (128)
71 cd04011 C2B_Ferlin C2 domain s 99.7 3.1E-16 6.6E-21 145.3 11.8 97 9-117 5-110 (111)
72 cd04030 C2C_KIAA1228 C2 domain 99.7 3.1E-16 6.6E-21 148.6 12.0 102 8-116 16-127 (127)
73 cd04049 C2_putative_Elicitor-r 99.7 3.1E-16 6.6E-21 148.1 11.7 103 8-117 1-108 (124)
74 cd08680 C2_Kibra C2 domain fou 99.7 2.7E-16 5.9E-21 148.3 11.0 102 7-115 13-124 (124)
75 cd04017 C2D_Ferlin C2 domain f 99.7 9E-16 1.9E-20 147.3 14.3 118 9-138 2-134 (135)
76 cd08521 C2A_SLP C2 domain firs 99.7 4E-16 8.8E-21 146.9 11.6 103 7-115 13-123 (123)
77 cd08386 C2A_Synaptotagmin-7 C2 99.7 5.1E-16 1.1E-20 146.7 11.9 103 7-116 15-124 (125)
78 cd08407 C2B_Synaptotagmin-13 C 99.7 6.8E-17 1.5E-21 155.0 5.8 111 6-123 13-131 (138)
79 cd08676 C2A_Munc13-like C2 dom 99.7 5.1E-16 1.1E-20 151.4 11.0 99 6-115 26-153 (153)
80 KOG3603 Predicted phospholipas 99.6 3.5E-14 7.6E-19 153.4 25.8 355 200-714 73-437 (456)
81 cd08686 C2_ABR C2 domain in th 99.6 1.9E-15 4.2E-20 139.5 13.1 104 10-135 1-118 (118)
82 cd00275 C2_PLC_like C2 domain 99.6 2.9E-15 6.2E-20 141.9 14.3 119 9-135 3-127 (128)
83 cd08390 C2A_Synaptotagmin-15-1 99.6 1.5E-15 3.3E-20 143.0 12.3 104 7-116 13-122 (123)
84 cd04038 C2_ArfGAP C2 domain pr 99.6 1.3E-15 2.7E-20 147.7 11.5 93 8-109 2-95 (145)
85 cd08384 C2B_Rabphilin_Doc2 C2 99.6 4.4E-16 9.6E-21 148.9 8.3 108 7-123 12-127 (133)
86 cd08404 C2B_Synaptotagmin-4 C2 99.6 6.2E-16 1.3E-20 148.6 8.6 108 7-123 14-129 (136)
87 cd08406 C2B_Synaptotagmin-12 C 99.6 4.5E-16 9.8E-21 149.2 7.5 108 7-123 14-129 (136)
88 cd08692 C2B_Tac2-N C2 domain s 99.6 7.9E-16 1.7E-20 145.9 8.7 109 7-123 13-129 (135)
89 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 1.7E-15 3.7E-20 149.8 11.2 104 6-116 25-137 (162)
90 cd08389 C2A_Synaptotagmin-14_1 99.6 2.5E-15 5.4E-20 142.1 11.8 102 7-116 15-123 (124)
91 cd04032 C2_Perforin C2 domain 99.6 2.2E-15 4.8E-20 142.5 10.8 89 7-104 27-118 (127)
92 cd04021 C2_E3_ubiquitin_ligase 99.6 5.5E-15 1.2E-19 139.9 13.6 117 8-133 2-124 (125)
93 cd08675 C2B_RasGAP C2 domain s 99.6 2.9E-15 6.2E-20 144.1 11.5 101 10-118 1-121 (137)
94 cd08403 C2B_Synaptotagmin-3-5- 99.6 9.4E-16 2E-20 146.9 7.6 109 6-123 12-128 (134)
95 cd08405 C2B_Synaptotagmin-7 C2 99.6 1.2E-15 2.6E-20 146.5 8.1 108 7-123 14-129 (136)
96 cd08402 C2B_Synaptotagmin-1 C2 99.6 7.5E-16 1.6E-20 148.0 6.6 109 6-123 13-129 (136)
97 cd04026 C2_PKC_alpha_gamma C2 99.6 6E-15 1.3E-19 140.7 11.1 106 5-118 10-122 (131)
98 cd00276 C2B_Synaptotagmin C2 d 99.6 2.1E-15 4.5E-20 144.1 7.8 108 7-123 13-128 (134)
99 PLN03200 cellulose synthase-in 99.6 5.4E-15 1.2E-19 187.5 11.7 119 6-137 1978-2101(2102)
100 cd08409 C2B_Synaptotagmin-15 C 99.6 2.9E-15 6.4E-20 144.1 6.9 108 7-122 14-129 (137)
101 cd08691 C2_NEDL1-like C2 domai 99.6 3.7E-14 7.9E-19 136.1 14.1 115 9-133 2-136 (137)
102 cd08410 C2B_Synaptotagmin-17 C 99.6 4.1E-15 8.8E-20 142.8 7.2 109 7-123 13-129 (135)
103 PHA02820 phospholipase-D-like 99.6 3.4E-14 7.3E-19 160.8 15.3 164 454-714 4-167 (424)
104 cd04009 C2B_Munc13-like C2 dom 99.6 1.7E-14 3.6E-19 138.2 10.8 92 7-105 15-118 (133)
105 cd04037 C2E_Ferlin C2 domain f 99.5 3.7E-14 8E-19 134.1 11.2 88 10-104 2-92 (124)
106 cd04035 C2A_Rabphilin_Doc2 C2 99.5 5.3E-14 1.1E-18 132.7 12.3 102 7-115 14-123 (123)
107 cd08408 C2B_Synaptotagmin-14_1 99.5 9.1E-15 2E-19 140.7 7.0 109 7-123 14-131 (138)
108 cd04048 C2A_Copine C2 domain f 99.5 3.5E-14 7.6E-19 133.4 10.6 98 13-117 5-114 (120)
109 cd00138 PLDc Phospholipase D. 99.5 1.6E-13 3.4E-18 137.3 14.6 145 198-426 20-169 (176)
110 KOG1028 Ca2+-dependent phospho 99.5 9.2E-14 2E-18 156.9 13.7 127 6-139 165-297 (421)
111 KOG0696 Serine/threonine prote 99.5 1.3E-14 2.9E-19 155.1 3.9 102 8-118 180-289 (683)
112 PRK12452 cardiolipin synthetas 99.5 4.1E-13 9E-18 155.6 13.5 154 168-427 328-481 (509)
113 KOG2059 Ras GTPase-activating 99.4 2.7E-13 5.9E-18 153.0 9.5 122 8-140 5-129 (800)
114 cd00138 PLDc Phospholipase D. 99.4 7.5E-13 1.6E-17 132.4 11.3 146 493-714 19-167 (176)
115 KOG1011 Neurotransmitter relea 99.4 2.7E-13 5.9E-18 150.1 7.7 116 8-134 295-422 (1283)
116 PHA03003 palmytilated EEV memb 99.4 2.2E-12 4.8E-17 144.2 14.0 146 200-426 217-363 (369)
117 PRK13912 nuclease NucT; Provis 99.4 2.7E-12 5.8E-17 129.0 13.0 143 493-716 31-174 (177)
118 PRK13912 nuclease NucT; Provis 99.4 6.7E-12 1.4E-16 126.1 15.8 140 199-426 33-174 (177)
119 cd04047 C2B_Copine C2 domain s 99.4 1.8E-12 4E-17 119.6 9.9 88 12-107 4-102 (110)
120 PLN02223 phosphoinositide phos 99.4 4.8E-12 1E-16 143.3 14.8 123 7-135 408-536 (537)
121 PLN02952 phosphoinositide phos 99.3 1.1E-11 2.3E-16 143.3 14.6 123 7-135 469-598 (599)
122 PF00168 C2: C2 domain; Inter 99.3 5.6E-12 1.2E-16 109.5 9.3 81 10-97 1-85 (85)
123 KOG0169 Phosphoinositide-speci 99.3 6.5E-12 1.4E-16 144.5 12.0 123 9-137 617-745 (746)
124 COG5038 Ca2+-dependent lipid-b 99.3 8.2E-12 1.8E-16 148.4 13.1 135 6-149 434-570 (1227)
125 PF13091 PLDc_2: PLD-like doma 99.3 1E-11 2.2E-16 117.0 9.5 113 500-693 1-113 (126)
126 cd00030 C2 C2 domain. The C2 d 99.3 2.4E-11 5.3E-16 107.5 10.3 99 10-115 1-102 (102)
127 PLN02230 phosphoinositide phos 99.3 3.9E-11 8.5E-16 138.5 14.3 123 7-135 468-597 (598)
128 PRK01642 cls cardiolipin synth 99.3 1.4E-11 3.1E-16 142.5 10.1 152 168-426 302-454 (483)
129 smart00239 C2 Protein kinase C 99.2 4.2E-11 9.1E-16 106.6 10.5 94 9-109 1-98 (101)
130 PLN02222 phosphoinositide phos 99.2 6.6E-11 1.4E-15 136.5 14.6 125 7-136 451-581 (581)
131 PLN02228 Phosphoinositide phos 99.2 1.1E-10 2.4E-15 134.4 14.9 125 8-137 431-562 (567)
132 COG5038 Ca2+-dependent lipid-b 99.2 2.6E-11 5.6E-16 144.3 9.4 122 6-137 1038-1162(1227)
133 PF13091 PLDc_2: PLD-like doma 99.1 3.7E-10 8E-15 106.4 11.9 124 204-423 1-126 (126)
134 KOG1028 Ca2+-dependent phospho 99.1 8.1E-11 1.8E-15 133.2 6.7 108 7-123 297-412 (421)
135 cd08689 C2_fungal_Pkc1p C2 dom 99.1 4.6E-10 9.9E-15 100.6 8.0 88 10-105 1-88 (109)
136 cd08374 C2F_Ferlin C2 domain s 99.0 9.8E-10 2.1E-14 104.4 10.2 93 10-107 2-125 (133)
137 PRK11263 cardiolipin synthase 99.0 1.5E-09 3.3E-14 122.6 13.2 134 199-424 206-340 (411)
138 KOG1264 Phospholipase C [Lipid 99.0 1E-09 2.3E-14 125.2 10.7 124 7-141 1064-1194(1267)
139 PRK05443 polyphosphate kinase; 98.9 7.4E-09 1.6E-13 123.0 12.3 132 498-715 351-494 (691)
140 KOG1031 Predicted Ca2+-depende 98.8 1.2E-08 2.7E-13 112.6 10.1 121 7-137 2-137 (1169)
141 PF00614 PLDc: Phospholipase D 98.8 1.6E-09 3.5E-14 73.8 1.3 27 324-361 2-28 (28)
142 PRK09428 pssA phosphatidylseri 98.7 1.6E-07 3.5E-12 107.1 14.1 126 494-678 34-161 (451)
143 KOG3603 Predicted phospholipas 98.7 3E-07 6.4E-12 100.4 15.2 175 454-714 48-223 (456)
144 KOG1328 Synaptic vesicle prote 98.6 8.1E-09 1.8E-13 117.0 1.0 122 9-140 115-305 (1103)
145 smart00155 PLDc Phospholipase 98.5 5.3E-08 1.1E-12 67.0 3.0 25 652-676 4-28 (28)
146 KOG1328 Synaptic vesicle prote 98.5 2.1E-08 4.5E-13 113.7 1.6 90 7-104 946-1048(1103)
147 COG1502 Cls Phosphatidylserine 98.4 1.5E-06 3.3E-11 99.8 11.9 136 201-427 272-410 (438)
148 PF00614 PLDc: Phospholipase D 98.2 4.1E-07 8.9E-12 62.1 1.5 26 651-676 3-28 (28)
149 cd08683 C2_C2cd3 C2 domain fou 98.1 2.7E-06 5.8E-11 78.8 3.9 104 10-115 1-143 (143)
150 PF13918 PLDc_3: PLD-like doma 98.0 0.00013 2.8E-09 72.4 14.2 133 402-573 7-148 (177)
151 KOG2059 Ras GTPase-activating 98.0 9.3E-06 2E-10 93.1 6.7 105 32-137 148-277 (800)
152 TIGR03705 poly_P_kin polyphosp 98.0 6.4E-05 1.4E-09 89.5 13.3 131 498-714 342-484 (672)
153 KOG1265 Phospholipase C [Lipid 97.8 7.3E-05 1.6E-09 87.5 10.2 115 5-136 700-823 (1189)
154 KOG1326 Membrane-associated pr 97.8 1.3E-05 2.8E-10 95.0 3.0 121 9-145 614-738 (1105)
155 KOG0905 Phosphoinositide 3-kin 97.8 1.8E-05 3.8E-10 94.8 3.9 104 6-116 1522-1634(1639)
156 KOG1013 Synaptic vesicle prote 97.7 1E-05 2.2E-10 85.7 1.3 200 8-224 93-312 (362)
157 PF07894 DUF1669: Protein of u 97.6 0.00044 9.6E-09 73.4 11.9 189 132-423 90-278 (284)
158 smart00155 PLDc Phospholipase 97.5 7.4E-05 1.6E-09 51.3 2.8 25 325-360 3-27 (28)
159 PF13918 PLDc_3: PLD-like doma 97.5 0.00055 1.2E-08 67.9 9.9 69 184-269 71-140 (177)
160 KOG1011 Neurotransmitter relea 97.4 0.00033 7.1E-09 79.4 8.2 100 9-116 1126-1236(1283)
161 PLN02964 phosphatidylserine de 97.4 0.0002 4.4E-09 84.5 6.3 101 6-120 52-156 (644)
162 KOG1013 Synaptic vesicle prote 97.4 0.00019 4.1E-09 76.4 5.0 101 6-116 231-340 (362)
163 KOG3964 Phosphatidylglycerolph 97.4 0.011 2.3E-07 64.7 18.2 128 197-363 37-171 (469)
164 PLN02866 phospholipase D 97.3 0.0013 2.8E-08 80.3 11.4 62 494-566 343-404 (1068)
165 KOG2060 Rab3 effector RIM1 and 97.3 0.00028 6E-09 76.3 4.8 107 7-119 268-381 (405)
166 PF10358 NT-C2: N-terminal C2 96.5 0.08 1.7E-06 51.0 14.7 121 9-143 8-142 (143)
167 cd08684 C2A_Tac2-N C2 domain f 96.4 0.0028 6.1E-08 55.1 3.1 96 11-115 2-103 (103)
168 PF07894 DUF1669: Protein of u 96.2 0.029 6.4E-07 59.8 10.4 123 493-680 132-255 (284)
169 PF13090 PP_kinase_C: Polyphos 96.2 1.5 3.2E-05 48.3 23.4 136 200-421 19-160 (352)
170 COG3886 Predicted HKD family n 96.1 0.083 1.8E-06 52.7 12.2 141 198-425 38-179 (198)
171 COG0855 Ppk Polyphosphate kina 96.1 1.7 3.6E-05 51.1 24.3 96 197-337 350-448 (696)
172 KOG3837 Uncharacterized conser 96.1 0.006 1.3E-07 66.7 4.3 118 10-137 369-504 (523)
173 KOG1326 Membrane-associated pr 95.6 0.0027 5.9E-08 76.0 -0.6 101 8-117 206-317 (1105)
174 PLN02352 phospholipase D epsil 95.5 0.048 1E-06 65.5 9.1 91 167-269 426-519 (758)
175 cd08687 C2_PKN-like C2 domain 95.4 0.081 1.8E-06 46.6 8.0 84 35-135 9-92 (98)
176 KOG1329 Phospholipase D1 [Lipi 95.3 0.061 1.3E-06 64.8 9.3 138 198-362 565-726 (887)
177 cd08398 C2_PI3K_class_I_alpha 95.2 0.11 2.4E-06 51.2 9.5 85 6-101 6-104 (158)
178 KOG1452 Predicted Rho GTPase-a 94.7 0.06 1.3E-06 57.2 6.2 117 6-137 49-168 (442)
179 cd08693 C2_PI3K_class_I_beta_d 94.5 0.22 4.7E-06 50.0 9.4 72 6-86 6-86 (173)
180 PLN03008 Phospholipase D delta 94.1 0.14 3E-06 62.1 8.2 28 324-362 714-741 (868)
181 PLN02270 phospholipase D alpha 94.1 0.15 3.2E-06 61.7 8.4 29 324-363 655-683 (808)
182 PF13090 PP_kinase_C: Polyphos 93.2 0.26 5.6E-06 54.0 7.6 91 544-692 51-148 (352)
183 KOG1327 Copine [Signal transdu 93.1 0.19 4.2E-06 57.8 6.9 70 34-105 156-236 (529)
184 PF15627 CEP76-C2: CEP76 C2 do 92.6 0.82 1.8E-05 44.8 9.5 127 9-139 10-153 (156)
185 cd08397 C2_PI3K_class_III C2 d 92.6 0.4 8.6E-06 47.4 7.5 66 35-101 30-105 (159)
186 cd08380 C2_PI3K_like C2 domain 92.4 0.65 1.4E-05 45.6 8.7 88 7-102 7-106 (156)
187 PF12416 DUF3668: Cep120 prote 92.3 1.1 2.4E-05 49.5 11.3 117 10-137 2-133 (340)
188 PF11495 Regulator_TrmB: Archa 92.1 0.3 6.5E-06 51.3 6.4 49 199-271 10-58 (233)
189 cd04012 C2A_PI3K_class_II C2 d 90.2 1.2 2.7E-05 44.4 8.3 89 6-100 6-116 (171)
190 PF00792 PI3K_C2: Phosphoinosi 90.2 2.3 5E-05 41.0 10.0 67 36-103 3-85 (142)
191 PF15625 CC2D2AN-C2: CC2D2A N- 89.3 1.5 3.3E-05 43.7 8.1 70 35-104 37-107 (168)
192 PF14429 DOCK-C2: C2 domain in 88.9 1.7 3.6E-05 43.9 8.2 54 48-102 60-120 (184)
193 cd08399 C2_PI3K_class_I_gamma 88.0 4.1 9E-05 41.0 10.2 119 7-137 9-139 (178)
194 COG0855 Ppk Polyphosphate kina 87.7 1.8 3.8E-05 51.0 8.2 88 544-689 385-479 (696)
195 KOG0694 Serine/threonine prote 86.7 0.19 4.1E-06 59.1 -0.2 96 35-140 28-125 (694)
196 PF09565 RE_NgoFVII: NgoFVII r 86.0 6.1 0.00013 43.0 10.9 40 651-692 79-123 (296)
197 cd08695 C2_Dock-B C2 domains f 83.8 2.2 4.8E-05 43.3 5.8 37 48-85 54-93 (189)
198 cd08679 C2_DOCK180_related C2 81.1 3.6 7.8E-05 41.3 6.3 52 50-102 55-115 (178)
199 cd08694 C2_Dock-A C2 domains f 80.9 2.5 5.5E-05 43.0 5.0 38 47-85 53-93 (196)
200 KOG4269 Rac GTPase-activating 79.5 0.77 1.7E-05 55.2 0.9 116 5-140 756-886 (1112)
201 COG3886 Predicted HKD family n 78.8 26 0.00057 35.4 11.1 142 494-718 38-182 (198)
202 smart00142 PI3K_C2 Phosphoinos 76.1 13 0.00029 33.5 7.8 69 10-85 13-90 (100)
203 PF11495 Regulator_TrmB: Archa 76.1 8.3 0.00018 40.5 7.5 51 493-567 8-58 (233)
204 PF11618 DUF3250: Protein of u 75.9 20 0.00043 33.0 8.9 94 38-136 2-105 (107)
205 cd08696 C2_Dock-C C2 domains f 73.5 8.2 0.00018 38.9 6.2 39 47-86 54-95 (179)
206 KOG1327 Copine [Signal transdu 71.6 6 0.00013 46.0 5.3 85 46-134 40-130 (529)
207 cd05137 RasGAP_CLA2_BUD2 CLA2/ 71.0 5.1 0.00011 45.5 4.6 44 92-137 1-45 (395)
208 cd08697 C2_Dock-D C2 domains f 69.1 11 0.00024 38.1 6.1 40 46-86 55-97 (185)
209 PF06087 Tyr-DNA_phospho: Tyro 65.3 3.9 8.4E-05 47.3 2.2 39 650-689 346-401 (443)
210 PTZ00447 apical membrane antig 52.8 1.1E+02 0.0023 33.8 10.1 99 10-121 60-161 (508)
211 PF06219 DUF1005: Protein of u 47.8 1.4E+02 0.003 34.0 10.3 112 34-150 35-178 (460)
212 KOG2419 Phosphatidylserine dec 37.2 3.3 7.1E-05 48.3 -4.2 77 8-89 280-358 (975)
213 KOG3964 Phosphatidylglycerolph 36.9 61 0.0013 36.4 5.5 56 494-569 38-93 (469)
214 KOG3508 GTPase-activating prot 30.1 21 0.00046 44.1 0.8 95 10-117 104-203 (932)
215 PF07162 B9-C2: Ciliary basal 28.6 5.4E+02 0.012 25.4 10.4 92 10-114 4-117 (168)
216 cd03413 CbiK_C Anaerobic cobal 26.8 4.8E+02 0.01 23.6 8.8 57 250-307 43-99 (103)
217 PF06087 Tyr-DNA_phospho: Tyro 25.1 48 0.001 38.4 2.5 27 652-678 101-131 (443)
218 KOG3543 Ca2+-dependent activat 24.2 3.4E+02 0.0074 32.3 8.8 100 6-118 339-442 (1218)
219 COG1184 GCD2 Translation initi 22.2 2.1E+02 0.0046 31.3 6.5 47 250-307 131-177 (301)
No 1
>PLN02270 phospholipase D alpha
Probab=100.00 E-value=9.9e-189 Score=1612.50 Aligned_cols=789 Identities=64% Similarity=1.121 Sum_probs=736.5
Q ss_pred CCCcccceEEEEEEEEeecCCCCCC---C----CCc-----cCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEE
Q 003523 1 MAPRLLHGILIVRIYGIDKLHTGCG---F----GSC-----EQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFR 68 (813)
Q Consensus 1 ~~~~ll~G~L~V~IieA~~L~~~~~---~----~~~-----~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~ 68 (813)
|+++||||+|+|||+||++|++++. + ... ...++|||||+|+|++++++||+|++|...||+|||+|+
T Consensus 1 ~~~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~ 80 (808)
T PLN02270 1 MAQILLHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFH 80 (808)
T ss_pred CcceeeecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceE
Confidence 8889999999999999999997311 0 010 012458999999999999999999998557999999999
Q ss_pred EEecCCcceEEEEEEeCCCCCceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEEEEEeeecccCccccccc
Q 003523 69 IYCAHRVSHVVFTIKNDNPVGAILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQFVHVVNDNSWSRGI 148 (813)
Q Consensus 69 ~~v~~~~~~l~~~V~D~d~~g~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f~~~~~~~~w~~gi 148 (813)
++|+|.++.|+|+|||+|.+|+.+||+++||+++|++|+.+++||++++.+|||++++.+|||+++|+|++.++.|.+|+
T Consensus 81 i~~ah~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~~~~~~gv 160 (808)
T PLN02270 81 IYCAHMASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKDRNWGRGI 160 (808)
T ss_pred EeeccCcceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcccCcchhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccccccccCcEEEEeeeccCCCCCCCCcccCCCCcccchhhHHHHHHHHHhcccEEEEEEeccCCceeE
Q 003523 149 RSRPYDYEGVPYTYFGQRQGCKVTLYQDAHVLDDFKPKIPLSNGEYYESHRCWEDIFDAIASAEHFIYMTGWSMYAPITL 228 (813)
Q Consensus 149 ~~~~~~~~~~~~~~~p~~~gn~v~l~~d~~~~~~~~p~~~~~~g~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L 228 (813)
++ +.+.|||++|||+|+||+||||||+|++++|+|.|+++||+.|++++|||++++||.+|||+|||++|+|+++++|
T Consensus 161 ~~--~~~~gvp~t~f~~r~g~~vtlyqdahv~~~~~p~i~l~~g~~~~~~~cwedi~~AI~~Ar~~IyI~GW~~d~~i~L 238 (808)
T PLN02270 161 RS--AKFPGVPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDAITNAKHLIYITGWSVYTEISL 238 (808)
T ss_pred CC--cCcCCCCCcccccCCCCeeEEeccccCCCCCCCccccCCCcccchhhhHHHHHHHHHhhhcEEEEEEeecCCCceE
Confidence 87 7999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCchhhhhhHHHHHHHHHHHHHcCCeEEEEEecCCCCcccccccCcCCCCcHHHHHHHhcCCCEEEEcCC
Q 003523 229 LRDPRRIKPKGNITAEEMLKTTLGDLLKKKADEGVKVLLLIWDDRTSVDILKEDGLMGTHDEETADYFRKTKVRCVLCPR 308 (813)
Q Consensus 229 ~r~~~~~~~g~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~~~~g~~~t~~~~~~~~l~~~gV~~~~~~~ 308 (813)
+|++..+.++++. +|+++|++||++||+|+||+||+.++..+++..|+|.||+++++++|++++|+|++|++
T Consensus 239 vRd~~~p~~~~~~--------~LGeLLk~KA~eGV~V~iLvWDd~ts~~~~k~~g~m~thd~~t~~~f~~~~V~~~L~~r 310 (808)
T PLN02270 239 VRDSRRPKPGGDV--------TIGELLKKKASEGVRVLLLVWDDRTSVDLLKKDGLMATHDEETENFFRGTDVHCILCPR 310 (808)
T ss_pred ecCCCCCCCCCcc--------hHHHHHHHHhcCCCEEEEEEEcCcccchhhccccccccCHHHHHHHhccCCceEEEcCC
Confidence 9987654555455 99999999999999999999999988777778899999999999999999999999999
Q ss_pred CCC-ccccccccccccccccccceEEEcCCCCCCCCCcceeEEEEccccCCCccccCCCcccccccccccCCCCCCCCCC
Q 003523 309 TSE-IFTNIRGYQTSSIFTHHQKTVVVDSEVPGGGTQKRRVVSFVGGIDLCDGRYDTQEHSLFRTLKTIHRDDFHQPNFP 387 (813)
Q Consensus 309 ~p~-~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~nl~~~r~Dt~~H~~~~~l~~~~~~d~~~~~~~ 387 (813)
+|+ +.+++++...++.++||||+||||+++++++.++|+++|||||+|||++||||++|++|++|++.|++||++|+|.
T Consensus 311 ~P~~~~~~~~~~~~~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~GRWDT~~H~lf~~Ldt~h~~Df~~p~~~ 390 (808)
T PLN02270 311 NPDDGGSIVQDLQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFT 390 (808)
T ss_pred CcccccceeeccccccccccceeEEEEccCCccccccccceEEEEcceeccCCcccCccccccccccccccccccCcccc
Confidence 997 5667777788899999999999999988766789999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccccceeeeChHHHHHHHHHHHHHhhccCCCCCCCCcCcccccCCCCCcCc-CCCCceeeEEeecccc
Q 003523 388 GSSIEKGGPREPWHDIHCKLEGPVAWDVLYNFEQRWTKQADKKDLFPPESLHQNLIHPLLDTS-KDLESWNVQIFRSIDG 466 (813)
Q Consensus 388 ~~~~~~~~~r~pWhD~~~~i~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~vQv~rs~~~ 466 (813)
+++++.++||+||||+|++|+||+|++|+.+|++||+.++++.++....++.++..|+.+... +++++|+||+|||++.
T Consensus 391 ~~~~~~g~Pr~PWhDvh~rVeGPaa~dL~~~F~~rW~~atg~~ll~~~~~~~~~~~P~~~~~~p~d~~~w~VQvfRSid~ 470 (808)
T PLN02270 391 GASITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWSKQGGKDILVQLRELEDVIIPPSPVMFPDDHEVWNVQLFRSIDG 470 (808)
T ss_pred cccccCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHhhcCccchhhhcccccccCCCCcccCCCcCCccccceeecccc
Confidence 988888999999999999999999999999999999999988766555556665556554333 6678999999999999
Q ss_pred CcccCCCCChHHHhhhccccCCCCcchhHHHHHHHHHHHhccceEEEeeccccccccCccccccccchhhhhccchHHHH
Q 003523 467 TAAADFPTDPFEAARVGLITGKDNVFDRSIQDAYINAIRRAKNFIYIENQYFIGSSYGWLSKDIRVEDINALQLIPKELS 546 (813)
Q Consensus 467 ~~~~~~p~~~~~~~~~~l~~~~~~~~~~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~~~~~~~~~~~~~~~n~i~~~~a 546 (813)
+++.+||..+++++.+|++++++...++||+.+|++||++||||||||||||++++++|+.+++++++.++.|+||++|+
T Consensus 471 g~a~~~P~~~~~~~~~~lv~g~~~~~~rsI~~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~el~ 550 (808)
T PLN02270 471 GAAFGFPETPEAAAEAGLVSGKDNIIDRSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKELS 550 (808)
T ss_pred hhhccCCCCcchhhhcceeccCCCchhhHHHHHHHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchHHHH
Confidence 99999999999999999999999888999999999999999999999999999999999877788899999999999999
Q ss_pred HHHHHHHHcCCCeEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCceEEeecCCccc--
Q 003523 547 LKIVSKIEAGEDFRVYIVIPMWPEGVPESASVQAILGWQRRTIEMMYADVAQAIQKKGLDDAYPRDYLTFFCLGNREN-- 624 (813)
Q Consensus 547 ~~i~~a~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~~t~~~~~~~i~~~L~~~gv~~~~~~~yl~~~~l~~~~~-- 624 (813)
++|+++++++++|+||||+|+||+|.+++.++|+||+||++||+|||.+|+++|+++|+..+ |+|||+||||+|||.
T Consensus 551 ~kI~~ri~~~e~f~VyIViP~~peG~~e~~~vq~il~wq~~TM~~~~~~I~~~Lk~~g~~~d-p~dyL~ff~L~nre~~~ 629 (808)
T PLN02270 551 LKIVSKIEAGEKFTVYVVVPMWPEGIPESGSVQAILDWQRRTMEMMYKDVIQALRAKGLEED-PRNYLTFFCLGNREVKK 629 (808)
T ss_pred HHHHHHHhCCCCCEEEEEECCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCccCC-ccceEEEEecccccccc
Confidence 99999999999999999999999999999999999999999999999999999999998654 999999999999987
Q ss_pred cccCCCCCCCCCCchHHHHHhhccceEEEeeeEEEEeceEEEEcccccCcccccCCCCcceEEeeecCCccCCCCchhhh
Q 003523 625 IEEYNPEQSSESNSDYYKAQKARRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGARDTEIAMGAFQPRHLNTTEPARGQ 704 (813)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHsK~mIVDD~~~~iGSaNin~RS~~~~~DsEi~v~i~~~~~~~~~~~~~~~ 704 (813)
.++|.|...|.++++|.++|++||+|||||||+|||||+|++|||||||+|||.|+|||||+|++++|.++++...++++
T Consensus 630 ~g~~~P~~~~~~~~~~~~aq~~rr~~I~vH~K~~ivDd~~~~iGSaN~n~rS~~G~rDSEIam~a~qp~~~~~~~~~r~~ 709 (808)
T PLN02270 630 SGEYEPSEKPEPDTDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLSTRQPARGQ 709 (808)
T ss_pred CcccCCccCCcccchhhhhhhccceeEEEeeeEEEEcCCEEEEeccccccccccCCccchhhhcccCccccccccchHHH
Confidence 46788877788888999999999999999999999999999999999999999999999999999999988766678999
Q ss_pred HHHHHHHHHHHhhCCCcccCCCCCChHHHHHHHHHHHHHHHHhhcCCCCCCCCcceeecccccCCCCccccCCCCCCCCC
Q 003523 705 IYGFRIALWYEHLGILKTSFNNPESSECVRLVNHIADQHWQMYTAKQPIRDLPGFLLRYPIEVTRDGVVKNLEGTEFFPD 784 (813)
Q Consensus 705 ~~~lR~~Lw~ehlG~~~~~~~~p~~~~~~~~~~~~a~~n~~~~~~~~~~~~~~g~l~~~p~~~~~~~~~~~~~~~~~~~~ 784 (813)
|++||++||+||||+.++.|.+|+|+||+++||++|++||++|+++++..+|+|||++||+.|+.||+|++|||+|+|||
T Consensus 710 i~~~R~~Lw~EHLG~~~~~f~~p~s~~cv~~v~~~a~~~w~~y~~~~~~~~~~ghl~~yp~~v~~~g~v~~l~g~~~fpd 789 (808)
T PLN02270 710 IHGFRMSLWYEHLGMLDETFLDPESEECIQKVNQIADKYWDLYSSETLEHDLPGHLLRYPIGVASEGDITELPGTEFFPD 789 (808)
T ss_pred HHHHHHHHHHHHhCCChhHhhCCCcHHHHHHHHHHHHHHHHHhcccccCCCCCcccccCceEecCCCcEeeCCCCCcCCC
Confidence 99999999999999999999999999999999999999999999999877899999999999999999999999999999
Q ss_pred CCCcccCcCCCCCCcc
Q 003523 785 TQAPVFGTKSESAPLL 800 (813)
Q Consensus 785 ~~~~~~~~~~~~~~~~ 800 (813)
|+|+|+|++|.+||..
T Consensus 790 ~~~~v~g~~~~~~p~~ 805 (808)
T PLN02270 790 TKARVLGAKSDYLPPI 805 (808)
T ss_pred CCCceeccccccCCcc
Confidence 9999999999899864
No 2
>PLN03008 Phospholipase D delta
Probab=100.00 E-value=5.9e-186 Score=1586.91 Aligned_cols=771 Identities=45% Similarity=0.786 Sum_probs=705.1
Q ss_pred cccceEEEEEEEEeecCCCCCC--------CC----------------------------CccCcccCCcEEEEEECCee
Q 003523 4 RLLHGILIVRIYGIDKLHTGCG--------FG----------------------------SCEQIVGTALYATVDLDKAR 47 (813)
Q Consensus 4 ~ll~G~L~V~IieA~~L~~~~~--------~~----------------------------~~~~~~~sDPYv~v~l~~~~ 47 (813)
+||||+|+|||+||++||+++- +. ...+..+|||||+|+|++++
T Consensus 10 ~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~r 89 (868)
T PLN03008 10 MLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQAT 89 (868)
T ss_pred EEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcc
Confidence 5999999999999999997321 10 00113468999999999999
Q ss_pred eeeeeeccCCCCCCeeeeEEEEEecCCcceEEEEEEeCCCCCceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCC
Q 003523 48 MARTRMITERTSRPHWNQSFRIYCAHRVSHVVFTIKNDNPVGAILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGS 127 (813)
Q Consensus 48 ~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~~V~D~d~~g~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g 127 (813)
++||+|+++ ++||+|||+|+|+|+|....|+|+|+|+|.+++++||+++|||++|.+|+.++.|++|++.+++|+++++
T Consensus 90 v~RTrVi~n-~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~ 168 (868)
T PLN03008 90 LARTRVLKN-SQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAET 168 (868)
T ss_pred eeeEEeCCC-CCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCc
Confidence 999999998 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeeecccCcccccccCCCCCCCCCCCccccccccCcEEEEeeeccCCCCCCCCcccCCCCcccchhhHHHHHHH
Q 003523 128 KIHVMLQFVHVVNDNSWSRGIRSRPYDYEGVPYTYFGQRQGCKVTLYQDAHVLDDFKPKIPLSNGEYYESHRCWEDIFDA 207 (813)
Q Consensus 128 ~l~l~l~f~~~~~~~~w~~gi~~~~~~~~~~~~~~~p~~~gn~v~l~~d~~~~~~~~p~~~~~~g~~~~~~~~~~~l~~a 207 (813)
+|||+|+|+|+.+++.|.+|++++ +++.|||++|||+|+||+|+||||||++++|+|.|+|+||+.|++++|||+|++|
T Consensus 169 kl~v~lqf~pv~~~~~~~~gv~~~-~~~~gvp~t~Fp~r~g~~VtlYqdAhv~d~~~p~i~l~~g~~y~~~rcwedi~~A 247 (868)
T PLN03008 169 AIFIDMKFTPFDQIHSYRCGIAGD-PERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWEDICYA 247 (868)
T ss_pred EEEEEEEEEEccccccccccccCC-cCCCCCCCccccCCCCCEeEEeccCCCCCCCCCccccCCCccccccccHHHHHHH
Confidence 999999999999999999999885 6999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccEEEEEEeccCCceeEecCCCCCCCCCCchhhhhhHHHHHHHHHHHHHcCCeEEEEEecCCCCcc--cccccCcC
Q 003523 208 IASAEHFIYMTGWSMYAPITLLRDPRRIKPKGNITAEEMLKTTLGDLLKKKADEGVKVLLLIWDDRTSVD--ILKEDGLM 285 (813)
Q Consensus 208 I~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~g~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~--~~~~~g~~ 285 (813)
|++|||+|||++|+++|+++|+|++..+.. ++. +|+++|++||+|||+|+|||||+.+|.. .+++.|+|
T Consensus 248 I~~Ak~~IyI~gWsl~~ei~L~R~~~~~~~-~~~--------~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~~~~~~g~m 318 (868)
T PLN03008 248 ISEAHHMIYIVGWSIFHKIKLVRETKVPRD-KDM--------TLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVM 318 (868)
T ss_pred HHhhhheEEEeceeecceeEEecCCCCCCC-CCc--------cHHHHHHHHHHCCCEEEEEEeccccccccccccccccc
Confidence 999999999999999999999998763211 245 9999999999999999999999999862 26789999
Q ss_pred CCCcHHHHHHHhcCCCEEEEcCCCCC-cccccccc-----------ccccccccccceEEEcCCCCCCCCCcceeEEEEc
Q 003523 286 GTHDEETADYFRKTKVRCVLCPRTSE-IFTNIRGY-----------QTSSIFTHHQKTVVVDSEVPGGGTQKRRVVSFVG 353 (813)
Q Consensus 286 ~t~~~~~~~~l~~~gV~~~~~~~~p~-~~~~~~~~-----------~~~~~~~hHqK~vVVD~~~~~~~~~~~~~vafvG 353 (813)
+||+++++++|++++|.|.+||++++ ..+++++. ..+++++||||+||||+++++ ++|+++||||
T Consensus 319 ~thdeet~~~f~h~~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~---~~r~~vAFvG 395 (868)
T PLN03008 319 GTHDEETRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVG---NNRKVTAFIG 395 (868)
T ss_pred ccccHHHHHhhcCCCeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCC---CccceEEEEc
Confidence 99999999999999999999999877 66777653 456889999999999997554 4799999999
Q ss_pred cccCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCccccceeeeChHHHHHHHHHHHHHhhccCC----
Q 003523 354 GIDLCDGRYDTQEHSLFRTLKTIHRDDFHQPNFPGSSIEKGGPREPWHDIHCKLEGPVAWDVLYNFEQRWTKQADK---- 429 (813)
Q Consensus 354 G~nl~~~r~Dt~~H~~~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhD~~~~i~Gpaa~dl~~~F~~rW~~~~~~---- 429 (813)
|+|||++||||++|++|++|++.|++||+||++++ ..++|++||||+|++|+||||++|+.+|.+||++++++
T Consensus 396 GiDLc~gRwDT~~H~l~~~l~t~~~~D~~np~~~~---~~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~aTg~~~~~ 472 (868)
T PLN03008 396 GLDLCDGRYDTPEHRILHDLDTVFKDDFHNPTFPA---GTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFS 472 (868)
T ss_pred ceeccCCccCCcCCCccccccccccccccCccccC---CCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHHhhCccccc
Confidence 99999999999999999999999999999999864 45678999999999999999999999999999999872
Q ss_pred -----------CCCCCCcCcccccCCCC--------------C--cC--cCCCCceeeEEeeccccCcccCCCCChHHHh
Q 003523 430 -----------KDLFPPESLHQNLIHPL--------------L--DT--SKDLESWNVQIFRSIDGTAAADFPTDPFEAA 480 (813)
Q Consensus 430 -----------~~~~~~~~~~~~~~p~~--------------~--~~--~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~ 480 (813)
+.++++.++++++.|+. + .. .+++++|.+|+|||++.|++.+||..+++++
T Consensus 473 ~~~k~~~~~~~d~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~w~vQifRSId~~sa~g~P~~~~~~~ 552 (868)
T PLN03008 473 LRLKGKTHWQDDALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAE 552 (868)
T ss_pred cccccccccccchhcchhhcccccCCCccccccccccccCCCCccCccccCCCCccccceeeecCchhhcCCCCCcchhh
Confidence 34556667777665531 0 01 1467899999999999999999999999999
Q ss_pred hhccccCCCCcchhHHHHHHHHHHHhccceEEEeeccccccccCccccccccchhhhhccchHHHHHHHHHHHHcCCCeE
Q 003523 481 RVGLITGKDNVFDRSIQDAYINAIRRAKNFIYIENQYFIGSSYGWLSKDIRVEDINALQLIPKELSLKIVSKIEAGEDFR 560 (813)
Q Consensus 481 ~~~l~~~~~~~~~~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~~~~~~~~~~~~~~~n~i~~~~a~~i~~a~~~g~~v~ 560 (813)
.++|+||++..+|+||++||++||++||||||||||||++++++|+++ ++.++.|+||++|+++|+++++++++|+
T Consensus 553 ~~~l~~gk~~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~----~~~~~~n~I~~eia~kI~~ki~~~e~f~ 628 (868)
T PLN03008 553 AQHLECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSY----RDAGADNLIPMELALKIVSKIRAKERFA 628 (868)
T ss_pred hhccccccccchhhhHHHHHHHHHHhhccEEEEehhhhhccccccccc----cccccccchhHHHHHHHHHHHhCCCCCE
Confidence 999999999999999999999999999999999999999999999876 7889999999999999999999999999
Q ss_pred EEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCceEEeecCCccccccCCCCCCCCCCchH
Q 003523 561 VYIVIPMWPEGVPESASVQAILGWQRRTIEMMYADVAQAIQKKGLDDAYPRDYLTFFCLGNRENIEEYNPEQSSESNSDY 640 (813)
Q Consensus 561 V~IvlP~~p~g~~~~~~~~~i~~~~~~t~~~~~~~i~~~L~~~gv~~~~~~~yl~~~~l~~~~~~~~~~~~~~~~~~~~~ 640 (813)
|+||+|+||+|.++++++|+||+||++||+|||.+|+++|+++|.+.+ |+|||+||||||||.. .+...+.+++.+
T Consensus 629 V~IViP~~peG~~~sg~vq~Il~wq~~TM~~~~~~I~~~L~~~~~d~~-p~dyl~fy~L~~~e~~---~~~~~~~~~~~~ 704 (868)
T PLN03008 629 VYVVIPLWPEGDPKSGPVQEILYWQSQTMQMMYDVIAKELKAVQSDAH-PLDYLNFYCLGKREQL---PDDMPATNGSVV 704 (868)
T ss_pred EEEEECCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC-ccCEEEEecccccccc---cCCCCCCCCchh
Confidence 999999999999999999999999999999999999999999887664 9999999999999762 212233456778
Q ss_pred HHHHhhccceEEEeeeEEEEeceEEEEcccccCcccccCCCCcceEEeeecCCccCCC--CchhhhHHHHHHHHHHHhhC
Q 003523 641 YKAQKARRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGARDTEIAMGAFQPRHLNTT--EPARGQIYGFRIALWYEHLG 718 (813)
Q Consensus 641 ~~~~~~~~~~iyvHsK~mIVDD~~~~iGSaNin~RS~~~~~DsEi~v~i~~~~~~~~~--~~~~~~~~~lR~~Lw~ehlG 718 (813)
..+|++||+|||||||+|||||++++|||||||+|||.++||||+++.+++|.++++. ..++|+|++||++||+||||
T Consensus 705 ~~a~~~rr~~IYvHsK~~ivDd~~~~iGSaN~n~RS~~~~Rd~E~~~~~~~~~~~~~~~~~~~rg~I~g~R~sLwaEHLG 784 (868)
T PLN03008 705 SDSYNFQRFMIYVHAKGMIVDDEYVLMGSANINQRSMAGTKDTEIAMGAYQPNHTWAHKGRHPRGQVYGYRMSLWAEHLG 784 (868)
T ss_pred hhhhhccceeEEEeeeEEEECCCEEEEeccccCHhhccCCCCceEeEEeccccccccccCcchhhHHHHHHHHHHHHHhC
Confidence 8899999999999999999999999999999999999999999999999999998753 47899999999999999999
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHHHHhhcCCCCCCCCcceeecccccCCCCccccCCCCCCCCCCCCcccCcCCCCCC
Q 003523 719 ILKTSFNNPESSECVRLVNHIADQHWQMYTAKQPIRDLPGFLLRYPIEVTRDGVVKNLEGTEFFPDTQAPVFGTKSESAP 798 (813)
Q Consensus 719 ~~~~~~~~p~~~~~~~~~~~~a~~n~~~~~~~~~~~~~~g~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (813)
+.++.|.+|+|+||++++|++|++||++|+++++ .+|+|||++||+.|+.||+|++|||+|+||||+|+|+|++|..||
T Consensus 785 ~~~~~~~~p~s~ecv~~vn~~a~~~w~~y~~~~~-~~~~ghl~~yp~~v~~~g~v~~l~g~~~fpd~~~~v~g~~~~~lp 863 (868)
T PLN03008 785 KTGDEFVEPSDLECLKKVNTISEENWKRFIDPKF-SELQGHLIKYPLQVDVDGKVSPLPDYETFPDVGGKIIGAHSMALP 863 (868)
T ss_pred CCHHHccCCCCHHHHHHHHHHHHHHHHHhhcccc-ccCCcccccCceEecCCCcEeeCCCCCcCCCCCCceeccccccCC
Confidence 9999999999999999999999999999999998 789999999999999999999999999999999999999998888
Q ss_pred cc
Q 003523 799 LL 800 (813)
Q Consensus 799 ~~ 800 (813)
..
T Consensus 864 ~~ 865 (868)
T PLN03008 864 DT 865 (868)
T ss_pred cc
Confidence 64
No 3
>PLN02352 phospholipase D epsilon
Probab=100.00 E-value=4.4e-175 Score=1498.34 Aligned_cols=743 Identities=46% Similarity=0.840 Sum_probs=666.6
Q ss_pred CcccceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCc-ceEEEE
Q 003523 3 PRLLHGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRV-SHVVFT 81 (813)
Q Consensus 3 ~~ll~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~-~~l~~~ 81 (813)
+.||||+|++||+||+-+.....+... -..+.||||+|+|++++++|| ++ ..||+|||+|+++|+|.+ +.|+|+
T Consensus 5 ~~~lhg~l~~~i~~~~~~~~~~~~~~~-~~~~~~~y~tv~~~~~~v~rt---~~-~~~p~w~e~f~i~~ah~~~~~~~f~ 79 (758)
T PLN02352 5 QKFFHGTLEATIFDATPYTPPFPFNCI-FLNGKATYVTIKIGNKKVAKT---SH-EYDRVWNQTFQILCAHPLDSTITIT 79 (758)
T ss_pred ccccccceEEEEEEeeehhhccccccc-ccCCCCceEEEEeCCcEEecC---CC-CCCCccccceeEEeeeecCCcEEEE
Confidence 358999999999999944322111011 112369999999999999999 55 679999999999999999 799999
Q ss_pred EEeCCCCCceeEEEEEEecccccCCce-eeeEEEccCCCCCcCCCCCeEEEEEEeeecccCcccccccCCCCCCCCCCCc
Q 003523 82 IKNDNPVGAILIGRAYVPVEDVAKEFV-IDRSFDIRDEEYKNIPGGSKIHVMLQFVHVVNDNSWSRGIRSRPYDYEGVPY 160 (813)
Q Consensus 82 V~D~d~~g~~~IG~~~ipl~~l~~g~~-~~~w~~L~~~~gk~~~~~g~l~l~l~f~~~~~~~~w~~gi~~~~~~~~~~~~ 160 (813)
||| ++.+||+++||+++|++|+. +++|+++++.+|||+++ .+||++++|+|++.++.|.+|+++ +++.|||+
T Consensus 80 vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~g~~~--~~~~gvp~ 152 (758)
T PLN02352 80 LKT----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-LKLRFMLWFRPAELEPTWCKILEN--GSFQGLRN 152 (758)
T ss_pred Eec----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-CEEEEEEEEEEhhhCcchhhcccC--CCcCCcCC
Confidence 999 57999999999999999976 99999999999999955 999999999999999999999988 78999999
Q ss_pred cccccccCcEEEEeeeccCCCCCCCCcccCCCCcccchhhHHHHHHHHHhcccEEEEEEeccCCceeEecCCCCCCCC-C
Q 003523 161 TYFGQRQGCKVTLYQDAHVLDDFKPKIPLSNGEYYESHRCWEDIFDAIASAEHFIYMTGWSMYAPITLLRDPRRIKPK-G 239 (813)
Q Consensus 161 ~~~p~~~gn~v~l~~d~~~~~~~~p~~~~~~g~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~g-~ 239 (813)
+|||+|+||+|+||||||++++|.|.|++ .|.+++||++|++||.+|||+|||++|+|+++++|+|++..+.|+ .
T Consensus 153 ~~f~~r~g~~v~lyqdah~~~~~~p~i~l----~~~~~~~f~al~eAI~~Ar~sI~I~gW~~d~~i~L~R~~~~~~p~~~ 228 (758)
T PLN02352 153 ATFPQRSNCHVILYQDAHHCSTFQPPVDL----CGSPRKLWEDVYKAIEGAKHLIYIAGWSFNPKMVLVRDPETDIPHAR 228 (758)
T ss_pred cccccCCCCEEEEEecCCCccccCCccee----ecCHHHHHHHHHHHHHhhccEEEEEEEEecCCceeccCccccccccc
Confidence 99999999999999999999999999988 678889999999999999999999999999999999986543321 2
Q ss_pred CchhhhhhHHHHHHHHHHHHHcCCeEEEEEecCCCCcccccccCcCCCCcHHHHHHHhcCCCEEEEcCCCCCcccccccc
Q 003523 240 NITAEEMLKTTLGDLLKKKADEGVKVLLLIWDDRTSVDILKEDGLMGTHDEETADYFRKTKVRCVLCPRTSEIFTNIRGY 319 (813)
Q Consensus 240 ~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~~~~g~~~t~~~~~~~~l~~~gV~~~~~~~~p~~~~~~~~~ 319 (813)
+. +|+++|++||+|||+|+||+||+.++..+++..|+|.+|++++.++|++++|+|.+|++.+.
T Consensus 229 g~--------~LgdLLk~KA~eGV~VrLLvWDd~~s~~~~~~~g~m~th~~~~~~~f~h~~V~~~l~pr~~~-------- 292 (758)
T PLN02352 229 GV--------KLGELLKRKAEEGVAVRVMLWDDETSLPIIKNKGVMGTHDEDAFAYFKHTKVVCKLCPRLHK-------- 292 (758)
T ss_pred ch--------HHHHHHHHHHHCCCEEEEEEEcCCCcccccccccccccchHHHHhhccCCceEEeecccccc--------
Confidence 23 99999999999999999999999998877788899999999999999999999999987653
Q ss_pred ccccccccccceEEEcCCCCCCCCCcceeEEEEccccCCCccccCCCcccccccccc-cCCCCCCCCCCCCCCCCCCCCC
Q 003523 320 QTSSIFTHHQKTVVVDSEVPGGGTQKRRVVSFVGGIDLCDGRYDTQEHSLFRTLKTI-HRDDFHQPNFPGSSIEKGGPRE 398 (813)
Q Consensus 320 ~~~~~~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~nl~~~r~Dt~~H~~~~~l~~~-~~~d~~~~~~~~~~~~~~~~r~ 398 (813)
..+++++||||+||||+++++ +.++|+++|||||+|||++||||++|++|+++++. |++||+|++|.++..+.++||+
T Consensus 293 ~~~~~~SHHQK~VVID~~~~~-~~~~r~~vAFVGGIDLc~GRwDT~~H~l~d~l~t~~~~~Df~~~~~~g~~~~~g~PR~ 371 (758)
T PLN02352 293 KFPTLFAHHQKTITVDTRAND-SISEREIMSFVGGLDLCDGRYDTEEHSLFRTLNTESHCQDFYQTSIAGAKLQKGGPRE 371 (758)
T ss_pred ccccccccccceEEEccCCCC-CccccceEEEEcceeccCCccCCccCCcccccccccccccccccccccccCCCCCCCC
Confidence 356789999999999997553 23479999999999999999999999999999986 6699999999998888899999
Q ss_pred CccccceeeeChHHHHHHHHHHHHHhhccCCCCCCCCcCcccccCCCCCcCcCCCCceeeEEeeccccCcccCCCCChHH
Q 003523 399 PWHDIHCKLEGPVAWDVLYNFEQRWTKQADKKDLFPPESLHQNLIHPLLDTSKDLESWNVQIFRSIDGTAAADFPTDPFE 478 (813)
Q Consensus 399 pWhD~~~~i~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~ 478 (813)
||||+||+|+||||+||..||+|||+++++.+.+.+..++.++..++.+ ..++.++|+||++||++.|++.+||+
T Consensus 372 PWHDvh~~V~GpAA~Dv~~~F~qRW~~~~~~~~l~p~~~~~~~~~~p~~-~~~~~~~w~VQv~RSid~~sa~~~P~---- 446 (758)
T PLN02352 372 PWHDAHACIVGEAAWDVLTNFEQRWTKQCNPSVLVPTSSIRNLVHQPGS-SESNNRNWKVQVYRSIDHVSASHMPR---- 446 (758)
T ss_pred CcEeEEEEEECHHHHHHHHHHHHHHhhccCccccCCcccccccccCCCC-CcccCCcccceEEEecCccccccCCC----
Confidence 9999999999999999999999999999887665555444443332211 11467899999999999999999985
Q ss_pred HhhhccccCCCCcchhHHHHHHHHHHHhccceEEEeeccccccccCccccccccchhhhhccchHHHHHHHHHHHHcCCC
Q 003523 479 AARVGLITGKDNVFDRSIQDAYINAIRRAKNFIYIENQYFIGSSYGWLSKDIRVEDINALQLIPKELSLKIVSKIEAGED 558 (813)
Q Consensus 479 ~~~~~l~~~~~~~~~~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~~~~~~~~~~~~~~~n~i~~~~a~~i~~a~~~g~~ 558 (813)
+...++||++||++||++||||||||||||++++++|+++ ++.++.|+||++|+++|+++++++++
T Consensus 447 ----------~~~~erSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~----~~~~~~N~I~~eIa~kI~~kir~~e~ 512 (758)
T PLN02352 447 ----------NLPVERSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKD----NHCGCTNLIPIEIALKIASKIRAKER 512 (758)
T ss_pred ----------CCchhhHHHHHHHHHHHhhhhEEEEehhhhhccccccccc----cccchhcchHHHHHHHHHHHHhCCCC
Confidence 2345899999999999999999999999999999999876 78899999999999999999999999
Q ss_pred eEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCceEEeecCCccc--cccCCCCCCCCC
Q 003523 559 FRVYIVIPMWPEGVPESASVQAILGWQRRTIEMMYADVAQAIQKKGLDDAYPRDYLTFFCLGNREN--IEEYNPEQSSES 636 (813)
Q Consensus 559 v~V~IvlP~~p~g~~~~~~~~~i~~~~~~t~~~~~~~i~~~L~~~gv~~~~~~~yl~~~~l~~~~~--~~~~~~~~~~~~ 636 (813)
|+|+||+|+||+|.+++.++|+||+||++||+|||.+|.++|+++|...+ |+|||+|||||||+. .++|.+...|.+
T Consensus 513 f~V~IViP~~PeG~~e~~~vq~il~wq~~TM~~~y~~I~~~L~~~g~~~~-P~dYl~F~cL~n~e~~~~g~~~~~~~p~~ 591 (758)
T PLN02352 513 FAVYILIPMWPEGVPESEPVQDILHWTRETMAMMYKLIGEAIQESGEPGH-PRDYLNFFCLANREEKRKGEFVPPYSPHQ 591 (758)
T ss_pred CEEEEEECCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCC-hhHheeeecccccccccCCccccccCCCC
Confidence 99999999999999999999999999999999999999999999997664 999999999999987 356655566667
Q ss_pred CchHHHHHhhccceEEEeeeEEEEeceEEEEcccccCcccccCCCCcceEEeeecCCccCCCCchhhhHHHHHHHHHHHh
Q 003523 637 NSDYYKAQKARRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGARDTEIAMGAFQPRHLNTTEPARGQIYGFRIALWYEH 716 (813)
Q Consensus 637 ~~~~~~~~~~~~~~iyvHsK~mIVDD~~~~iGSaNin~RS~~~~~DsEi~v~i~~~~~~~~~~~~~~~~~~lR~~Lw~eh 716 (813)
.+.|..+|+.||++||||||+|||||++++|||||||+|||.|+|||||+|+++++.+.... ..++++++||++||+||
T Consensus 592 ~~~~~~~~~~rr~~IYVHSKlMIVDD~~viIGSANIN~RSM~G~rDSEia~~~~~~~~~~~~-~~~~~i~~~R~~L~~EH 670 (758)
T PLN02352 592 KTQYWNAQKNRRFMVYVHSKLMIVDDTYILIGSANVNQRSMDGCRDTEIAIGCYQSKNGTNT-NNPRDIQAYRMSLWYEH 670 (758)
T ss_pred CchhhhcccccceeEEEeeeEEEEcCcEEEEcccccccccccCcccchhhhcccccccCCCc-ccchHHHHHHHHHHHHH
Confidence 77888899999999999999999999999999999999999999999999999999876542 44689999999999999
Q ss_pred hCCCcccCCCCCChHHHHHHHHHHHHHHHHhhcCCCCCCCCc-ceeecccccCCCCccccC-CCCCCCCCCCCcccCcCC
Q 003523 717 LGILKTSFNNPESSECVRLVNHIADQHWQMYTAKQPIRDLPG-FLLRYPIEVTRDGVVKNL-EGTEFFPDTQAPVFGTKS 794 (813)
Q Consensus 717 lG~~~~~~~~p~~~~~~~~~~~~a~~n~~~~~~~~~~~~~~g-~l~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 794 (813)
||+.++.|.+|+|+||++++|++|++||++|+++++ ++|+| ||++||+.|++||+|++| ||+|+||||+|+|+|++|
T Consensus 671 LG~~~~~f~~p~s~ec~~~v~~~~~~~w~~y~~~~~-~~~~g~hl~~yp~~v~~~g~v~~l~~g~~~fpd~~~~v~g~~~ 749 (758)
T PLN02352 671 TGLDEESFLEPESLECVRRLRTIGEQMWEIYSGEEV-VDMEGVHLVNYPISVTKDGAVEDLADGDGNFPDTKTPVKGRRS 749 (758)
T ss_pred hCCCHHHhcCCCCHHHHHHHHHHHHHHHHhhccchh-ccCCCcccccCCeEecCCcceeecCCCCcCCCCCCCceecccc
Confidence 999999999999999999999999999999999998 78999 999999999999999999 699999999999999999
Q ss_pred CCCCcc
Q 003523 795 ESAPLL 800 (813)
Q Consensus 795 ~~~~~~ 800 (813)
..||..
T Consensus 750 ~~~p~~ 755 (758)
T PLN02352 750 KMLPPV 755 (758)
T ss_pred ccCCcc
Confidence 899864
No 4
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=100.00 E-value=2.7e-151 Score=1292.33 Aligned_cols=735 Identities=47% Similarity=0.761 Sum_probs=660.0
Q ss_pred cccceEEEEEEEEeecCCCCCC-----------CC----------------C--c------cCcccCCcEEEEEECCeee
Q 003523 4 RLLHGILIVRIYGIDKLHTGCG-----------FG----------------S--C------EQIVGTALYATVDLDKARM 48 (813)
Q Consensus 4 ~ll~G~L~V~IieA~~L~~~~~-----------~~----------------~--~------~~~~~sDPYv~v~l~~~~~ 48 (813)
.|+||+|+++|.++..++++.. +. . . .+..++++|+++.|.+.++
T Consensus 72 ~L~hG~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~e~Ylt~~l~~~~~ 151 (887)
T KOG1329|consen 72 ELLHGTLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNINDNHDEKPSGPRSSLNSSMEKRKTLENYLTVVLHKARY 151 (887)
T ss_pred eeecCcEEEEEEecchhhhHHhHHHhhhhhcccccccccccccccccccCCCccCCcccchhhhhhccchheeeechhhh
Confidence 4899999999999999984211 00 0 0 0011259999999999999
Q ss_pred eeeeeccCCCCCCeeeeEEEEEecCCcceEEEEEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCC
Q 003523 49 ARTRMITERTSRPHWNQSFRIYCAHRVSHVVFTIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGS 127 (813)
Q Consensus 49 ~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g 127 (813)
++|+++.+.-.+|.|+++|++.++|....++++|.+.+..| +.++|.+++|+..+.+|..++.|+++++.+++++++..
T Consensus 152 ~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~~Il~~d~~~~~~~~ 231 (887)
T KOG1329|consen 152 RRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWFPILDNDGKPHQKGS 231 (887)
T ss_pred hchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccceeeeeccCCccccCCc
Confidence 99999998349999999999999999999999999999999 89999999999999999999999999999999998889
Q ss_pred eEEEEEEeeecccCcccccccCCCCCCCCCCCccccccccCcEEEEeeeccCCCCCCCCcccCCCCccc-chhhHHHHHH
Q 003523 128 KIHVMLQFVHVVNDNSWSRGIRSRPYDYEGVPYTYFGQRQGCKVTLYQDAHVLDDFKPKIPLSNGEYYE-SHRCWEDIFD 206 (813)
Q Consensus 128 ~l~l~l~f~~~~~~~~w~~gi~~~~~~~~~~~~~~~p~~~gn~v~l~~d~~~~~~~~p~~~~~~g~~~~-~~~~~~~l~~ 206 (813)
.+++++.|++++.+..|..++... +++.|+|.++|+++.||.|++|||+|++++|+|.+++++|++|. ++.||+++++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~s~-~~~r~~~~~~~~~~~g~gv~~~qd~Hr~~sf~P~r~~~~~kw~vd~~~~~edi~d 310 (887)
T KOG1329|consen 232 NESLRLGFTPMEKDRNLKLGCKSG-RSFRGWPGTIFPQRKGCGVTLYQDAHRFDSFAPVRTLDGGKWFVDGKKYWEDVAD 310 (887)
T ss_pred ccceEEeeEeechhhhhhheeccc-cccCCccceeeehhccCceeeeecccccCCcCCcccCCCceEEEchhhHHHHHHH
Confidence 999999999999999999999885 88999999999999999999999999999999999999999666 5579999999
Q ss_pred HHHhcccEEEEEEeccCCceeEecCCCCCCCCCCchhhhhhHHHHHHHHHHHHHcCCeEEEEEecCCCCcccccccCcCC
Q 003523 207 AIASAEHFIYMTGWSMYAPITLLRDPRRIKPKGNITAEEMLKTTLGDLLKKKADEGVKVLLLIWDDRTSVDILKEDGLMG 286 (813)
Q Consensus 207 aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~g~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~~~~g~~~ 286 (813)
||.+|||.|||++||++|++||+|+...+ .++ +|+++||+||++||+|+|||||+.++... .+
T Consensus 311 AI~~Ar~~IyItgWwl~pel~L~Rp~~~~---~~~--------rLdelLK~KAeeGVrV~ilv~kdv~s~~~------i~ 373 (887)
T KOG1329|consen 311 AIENARREIYITGWWLSPELYLVRPPKGP---NDW--------RLDELLKRKAEEGVRVLILVWKDVTSALG------IN 373 (887)
T ss_pred HHHhhhhEEEEeccccCceEEEEccCCCC---Cce--------EHHHHHHHHHhCCcEEEEEEeccchhccc------cC
Confidence 99999999999999999999999987652 245 99999999999999999999999988754 34
Q ss_pred CCcHHHHHHHhcCCCEEEEcCCCCCccccccccccccccccccceEEEcCCCCCCCCCcceeEEEEccccCCCccccCCC
Q 003523 287 THDEETADYFRKTKVRCVLCPRTSEIFTNIRGYQTSSIFTHHQKTVVVDSEVPGGGTQKRRVVSFVGGIDLCDGRYDTQE 366 (813)
Q Consensus 287 t~~~~~~~~l~~~gV~~~~~~~~p~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~nl~~~r~Dt~~ 366 (813)
++++++..++++++|+|.+||+++... ..++|+||||+||||.+ +|||||+|||+|||||++
T Consensus 374 S~~~k~~l~~lH~nV~vlr~P~~~~~~-------~~~~wtHHeK~VVVD~~-----------v~fvGGlDLC~GRYDT~e 435 (887)
T KOG1329|consen 374 SHYEKTRLFFLHPNVKVLRCPRHPGSG-------PTTLWTHHEKLVVVDQE-----------VAFVGGLDLCDGRYDTPE 435 (887)
T ss_pred chhHHHHHhhcCCCeEEEECCCCcCCC-------CceEEecceEEEEEcce-----------eccccceeccccccCCcc
Confidence 788999999999999999999887511 13689999999999999 999999999999999999
Q ss_pred cccccccccccCCCCCCCCCCCCC--CCCCCCCCCccccceeeeChHHHHHHHHHHHHHhhccCCC-----CCCCCcCcc
Q 003523 367 HSLFRTLKTIHRDDFHQPNFPGSS--IEKGGPREPWHDIHCKLEGPVAWDVLYNFEQRWTKQADKK-----DLFPPESLH 439 (813)
Q Consensus 367 H~~~~~l~~~~~~d~~~~~~~~~~--~~~~~~r~pWhD~~~~i~Gpaa~dl~~~F~~rW~~~~~~~-----~~~~~~~~~ 439 (813)
|+||+++.+.|++||+||+|.++. .+.++|||||||+||++.||+|+||++||+||||+++..+ .+..+.+.+
T Consensus 436 H~L~d~~~~~~gkDy~n~~~~~~~~~dr~~~PRmPWHDvh~~v~G~~ArDvarhF~QRWn~~~~~K~~~~~~~p~L~p~~ 515 (887)
T KOG1329|consen 436 HPLFDTLQTWHGKDYHNPNFKDFVDIDRKGGPRMPWHDVHCKVDGPAARDVARHFEQRWNKQKREKKPYDDSLPLLLPIS 515 (887)
T ss_pred ccccccccccccccccCcccccchhcccCCCCCCCceeeeeeeeChhHHHHHHHHHHHHHHHhcccCCCCccceeecChh
Confidence 999999999999999999999865 6788999999999999999999999999999999997532 222222333
Q ss_pred cccCCCCCcCcCCCCceeeEEeeccccCcccCCCCChHHHhhhccccCCCCcchhHHHHHHHHHHHhccceEEEeecccc
Q 003523 440 QNLIHPLLDTSKDLESWNVQIFRSIDGTAAADFPTDPFEAARVGLITGKDNVFDRSIQDAYINAIRRAKNFIYIENQYFI 519 (813)
Q Consensus 440 ~~~~p~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~sI~~ayl~aI~~Ak~~IyIEnqYFi 519 (813)
++..|+.+ ..++++.|++|++||++.+++.+ ++..+++|+.|++...+|.||++||+++|++||||||||||||+
T Consensus 516 ~~~~~~~~-~~~~~e~~~~q~f~si~~gs~~~----~qvlrs~g~wS~g~~~~e~SIq~AYv~~Ir~a~hFIYIENQfFi 590 (887)
T KOG1329|consen 516 DITGPSEP-NEEDPESWHVQVFRSIDGGSVAG----PQVLRSAGLWSGGINEIEDSIQNAYVKAIRNAEHFIYIENQFFI 590 (887)
T ss_pred hhcCCCCc-cccccccccccceeeccCCcccc----hHHhhhhcccccCCCchHHHHHHHHHHHHHhccceEEEeeeeEE
Confidence 44444433 23678999999999999988765 77788899999999999999999999999999999999999999
Q ss_pred ccccCccccccccchhhhhccchHHHHHHHHHHHHcCCCeEEEEEecCCC--CC--CCCchhHHHHHHHHHHHHHHHHHH
Q 003523 520 GSSYGWLSKDIRVEDINALQLIPKELSLKIVSKIEAGEDFRVYIVIPMWP--EG--VPESASVQAILGWQRRTIEMMYAD 595 (813)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~n~i~~~~a~~i~~a~~~g~~v~V~IvlP~~p--~g--~~~~~~~~~i~~~~~~t~~~~~~~ 595 (813)
++++.|... .|.++++|+++|++|+++|++|+||||||+|| || .++++++|+||+||+|||+|||++
T Consensus 591 ~ss~~~~~~---------~n~v~~ela~rIv~a~ra~e~frVYIVIPL~PgfEG~~~p~~~svqaIl~wQyrTms~g~~s 661 (887)
T KOG1329|consen 591 GSSFNWDSV---------LNKVGDELALRIVKAIRAGEKFRVYIVIPLWPGFEGDDTPGSGSVQAILHWQYRTMSMGYKS 661 (887)
T ss_pred eeccCCCcc---------cchHHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCCCCcchHHHHHHHHHHHHhhhHHH
Confidence 999887643 68889999999999999999999999999999 89 899999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCceEEeecCCccccccCCCCCCCCCCchHHHHHhhccceEEEeeeEEEEeceEEEEcccccCcc
Q 003523 596 VAQAIQKKGLDDAYPRDYLTFFCLGNRENIEEYNPEQSSESNSDYYKAQKARRFMIYVHSKMMIVDDEYIIIGSANINQR 675 (813)
Q Consensus 596 i~~~L~~~gv~~~~~~~yl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHsK~mIVDD~~~~iGSaNin~R 675 (813)
|+++|++.|++..+|.+|++|+|++++|. + +++.+++|||||||+|||||++++|||||||+|
T Consensus 662 I~~~Lka~g~d~~~yi~f~~lr~~g~~e~-----~------------~~~~~~emIYVHsK~mIvDD~~vIIGSANINqR 724 (887)
T KOG1329|consen 662 IYKALKAVGLDPADYIDFLGLRCLGNREE-----Q------------AQRLRREMIYVHSKLMIVDDEYVIIGSANINQR 724 (887)
T ss_pred HHHHHHHhcCCccccceeeeeeeeecccc-----c------------cccceEEEEEEeeeeEEecCCEEEEeecccchh
Confidence 99999999998445889999999999853 0 235678999999999999999999999999999
Q ss_pred cccCCCCcceEEeeecCCccCCC--CchhhhHHHHHHHHHHHhhCCCcccCCCCCChHHHHHHHHHHHHHHHHhhcCCCC
Q 003523 676 SMDGARDTEIAMGAFQPRHLNTT--EPARGQIYGFRIALWYEHLGILKTSFNNPESSECVRLVNHIADQHWQMYTAKQPI 753 (813)
Q Consensus 676 S~~~~~DsEi~v~i~~~~~~~~~--~~~~~~~~~lR~~Lw~ehlG~~~~~~~~p~~~~~~~~~~~~a~~n~~~~~~~~~~ 753 (813)
||.|+|||||||+++|+.++.+. +.+.+|+++|||+||+||||+.++.|.+|++++|.+.++++++++|..|+++..
T Consensus 725 Sm~G~RDSEIA~~~~d~~~~~s~m~g~p~~f~~~lR~slw~EHLG~~~d~~~~Pe~~ec~dpv~d~~~~~W~~~a~~n~- 803 (887)
T KOG1329|consen 725 SMLGNRDSEIAMGIYDTNHVWSKMNGRPYGFIYGLRMSLWREHLGLLDDAFEEPESLECEDPVRDLFEDLWQRYAARNT- 803 (887)
T ss_pred hccCCccceeEEEEecccchhhccCCcchhHHHHHHHHHHHHHhCCCcccccCcchhhhhhhHHHHHHHHHHHHHhhhh-
Confidence 99999999999999999998866 456699999999999999999999999999999999999999999999999987
Q ss_pred CCCCcceeecccccCCCCccccCCCCCCCCCCCCcccCcCCCCCC-cccccccc
Q 003523 754 RDLPGFLLRYPIEVTRDGVVKNLEGTEFFPDTQAPVFGTKSESAP-LLGAKSFL 806 (813)
Q Consensus 754 ~~~~g~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 806 (813)
+..+|||++||++++.+|+++++||++.|||+++++.|.+++.+| ...++.||
T Consensus 804 ~~y~~~f~~yP~~~~~~g~~~~~~~~~~~pd~~~~~~~~~~~~~~~~lt~~g~l 857 (887)
T KOG1329|consen 804 TIYEGHFRCYPIDVVRTGKVTELPGDETFPDTLGKIIGSKSDALPENLTTRGFL 857 (887)
T ss_pred hhhhceEEEcccccccCcceeecCCccccccccccccccccccCCcccccccee
Confidence 779999999999999999999999999999999999999988888 34445554
No 5
>PLN02866 phospholipase D
Probab=100.00 E-value=1.8e-93 Score=834.74 Aligned_cols=607 Identities=28% Similarity=0.456 Sum_probs=435.2
Q ss_pred CCCCeeeeE-------EEEEecCCc--ceEEEEEEeCCCCCceeEEEEEEecccccC-CceeeeEEEccCCCCCcCCCCC
Q 003523 58 TSRPHWNQS-------FRIYCAHRV--SHVVFTIKNDNPVGAILIGRAYVPVEDVAK-EFVIDRSFDIRDEEYKNIPGGS 127 (813)
Q Consensus 58 t~nP~WNE~-------F~~~v~~~~--~~l~~~V~D~d~~g~~~IG~~~ipl~~l~~-g~~~~~w~~L~~~~gk~~~~~g 127 (813)
..+..|... |-..+.++. ..+.+-++|.+. ....-|...+.+..-.. ......-+.+. .+
T Consensus 213 ~~~~~w~k~w~v~k~~~l~~~~~p~~~~~~~v~lfD~~~-~~~~~~~~~~~~~~~~k~~~~~~~~~~i~---------~~ 282 (1068)
T PLN02866 213 CCNDNWQKVWAVLKPGFLALLEDPFDAKPLDIIVFDVLP-ASNGNGEGQISLAKEIKERNPLRFGFKVT---------CG 282 (1068)
T ss_pred eecCchheeEEEEeccEEEEEecCCCCceeEEEEEeccc-ccccCCCcceeecccccccCCCcceEEEe---------cC
Confidence 456777775 344554432 456777788655 21222333333322111 11111222332 12
Q ss_pred eEEEEEEeeecccCcccccccCCCC---C-CCC-CC-Cccccccc----cCcEEEEeeeccCCCCCCCCcccCCCCcccc
Q 003523 128 KIHVMLQFVHVVNDNSWSRGIRSRP---Y-DYE-GV-PYTYFGQR----QGCKVTLYQDAHVLDDFKPKIPLSNGEYYES 197 (813)
Q Consensus 128 ~l~l~l~f~~~~~~~~w~~gi~~~~---~-~~~-~~-~~~~~p~~----~gn~v~l~~d~~~~~~~~p~~~~~~g~~~~~ 197 (813)
.=.+.+.-.....-..|...+..-. + .+. .- =.+|.|.+ .||++++|.||
T Consensus 283 ~r~l~l~~~s~~~~~~w~~ai~~~~~~~~~~~~~~hRF~SFAP~r~~~~~gN~vk~LvDG-------------------- 342 (1068)
T PLN02866 283 NRSIRLRTKSSAKVKDWVAAINDAGLRPPEGWCHPHRFGSFAPPRGLTEDGSQAQWFIDG-------------------- 342 (1068)
T ss_pred ceEEEEEECCHHHHHHHHHHHHHHHhccCccccccCcCCCcCCCccccCCCCEEEEEeCH--------------------
Confidence 2234444444444445665553310 0 000 00 13677877 68999999997
Q ss_pred hhhHHHHHHHHHhcccEEEEEEeccCCceeEecCCCCCCCCCCchhhhhhHHHHHHHHHHHHHcCCeEEEEEecCCCCcc
Q 003523 198 HRCWEDIFDAIASAEHFIYMTGWSMYAPITLLRDPRRIKPKGNITAEEMLKTTLGDLLKKKADEGVKVLLLIWDDRTSVD 277 (813)
Q Consensus 198 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~g~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~ 277 (813)
.++|++|++||++||++|+|++|+|+|++||+|+... +.+. +|.++|++||++||+|+||+||..+...
T Consensus 343 ~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~D---~~g~--------RL~~lL~rKAkrGVkVrVLLyD~vg~al 411 (1068)
T PLN02866 343 HAAFEAIASAIENAKSEIFITGWWLCPELYLRRPFHD---HESS--------RLDSLLEAKAKQGVQIYILLYKEVALAL 411 (1068)
T ss_pred HHHHHHHHHHHHhcccEEEEEEccCCceEEEEecCCC---chHH--------HHHHHHHHHHHCCCEEEEEEECcccccc
Confidence 4678999999999999999999999999999985321 1123 9999999999999999999999976431
Q ss_pred cccccCcCCCCcHHHHHHH--hcCCCEEEEcCCCCCccccccccccccccccccceEEEcCCCCCCCCCcceeEEEEccc
Q 003523 278 ILKEDGLMGTHDEETADYF--RKTKVRCVLCPRTSEIFTNIRGYQTSSIFTHHQKTVVVDSEVPGGGTQKRRVVSFVGGI 355 (813)
Q Consensus 278 ~~~~~g~~~t~~~~~~~~l--~~~gV~~~~~~~~p~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~ 355 (813)
... ...+.+.| .+.||+|..++.+ .. ....++|||||+||||++ +||+||+
T Consensus 412 ~~~--------S~~~k~~L~~lh~gI~V~r~P~~---~~-----~~~ln~RhHRKIVVIDg~-----------IAFvGGi 464 (1068)
T PLN02866 412 KIN--------SVYSKRRLLGIHENVKVLRYPDH---FS-----SGVYLWSHHEKLVIVDYQ-----------ICFIGGL 464 (1068)
T ss_pred ccC--------chhhHHHHHHhCCCeEEEecCcc---cc-----cCcccccCCCCeEEECCC-----------EEEecCc
Confidence 110 11222323 3579998655422 11 123579999999999999 9999999
Q ss_pred cCCCccccCCCcccccccc-cccCCCCCCCCCCCC----------CCCCCCCCCCccccceeeeChHHHHHHHHHHHHHh
Q 003523 356 DLCDGRYDTQEHSLFRTLK-TIHRDDFHQPNFPGS----------SIEKGGPREPWHDIHCKLEGPVAWDVLYNFEQRWT 424 (813)
Q Consensus 356 nl~~~r~Dt~~H~~~~~l~-~~~~~d~~~~~~~~~----------~~~~~~~r~pWhD~~~~i~Gpaa~dl~~~F~~rW~ 424 (813)
|||.|||||++|++.+... ..+++||.|+...+. -.+...||+||||+||+|+||+|.||+++|.+|||
T Consensus 465 NLc~GRWDT~~H~l~D~~~~~wPGkDY~Npr~~d~~~~~~~~~d~ldR~~~pRmPWHDV~~~V~GpAardLa~hFvqRWN 544 (1068)
T PLN02866 465 DLCFGRYDTPEHRVGDCPPVIWPGKDYYNPRESEPNSWEDTMKDELDRRKYPRMPWHDVHCALWGPPCRDVARHFVQRWN 544 (1068)
T ss_pred ccCCCccCCcccccccccccccCcccccccccccccccccccccccccccCCCCCceEEEEEEECHHHHHHHHHHHHHHH
Confidence 9999999999999866432 345788888754221 01244678999999999999999999999999999
Q ss_pred hccCCCC--------CCCC-----------------------------------------cCcccccCCCCCcC------
Q 003523 425 KQADKKD--------LFPP-----------------------------------------ESLHQNLIHPLLDT------ 449 (813)
Q Consensus 425 ~~~~~~~--------~~~~-----------------------------------------~~~~~~~~p~~~~~------ 449 (813)
.+++... +.+. ..++ ++.|..+..
T Consensus 545 ~at~~k~~~~~~~~ll~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~llP~~~~~~~~~~~ 623 (1068)
T PLN02866 545 YAKRNKAPNEQAIPLLMPHHHMVIPHYLGGSEEEEIESKNQEDNQKGIARQDSFSSRSSLQDIP-LLLPQEADATDGSGG 623 (1068)
T ss_pred HHhcccCccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cCCCCCccccccccc
Confidence 8865321 0000 0000 011111000
Q ss_pred --------------------------------------------------------------------------------
Q 003523 450 -------------------------------------------------------------------------------- 449 (813)
Q Consensus 450 -------------------------------------------------------------------------------- 449 (813)
T Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1068)
T PLN02866 624 GHKLNGMNSTNGSLSFSFRKSKIEPVLPDTPMKGFVDDLGFLDLSVKMSSAERGSKESDSEWWETQERGDQVGSADEVGQ 703 (1068)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence
Q ss_pred cCCCCceeeEEeeccccCcccCCCCChHHHhhhccccCCCCcchhHHHHHHHHHHHhccceEEEeeccccccccCccccc
Q 003523 450 SKDLESWNVQIFRSIDGTAAADFPTDPFEAARVGLITGKDNVFDRSIQDAYINAIRRAKNFIYIENQYFIGSSYGWLSKD 529 (813)
Q Consensus 450 ~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~~~~~~ 529 (813)
....+++.+||+||+..||+. ...+|+||++||+++|++|+||||||||||++++.+
T Consensus 704 ~~~~~~c~~QivRS~~~WS~G------------------~~~~E~SI~~AYi~~I~~A~hfIYIENQFFis~~~~----- 760 (1068)
T PLN02866 704 VGPRVSCRCQVIRSVSQWSAG------------------TSQVEESIHAAYCSLIEKAEHFIYIENQFFISGLSG----- 760 (1068)
T ss_pred cCCCCeEEEEEEeecccccCC------------------CCchHHHHHHHHHHHHHhcccEEEEecccccccccc-----
Confidence 011246889999999888641 112589999999999999999999999999987542
Q ss_pred cccchhhhhccchHHHHHHHHHHHHcCCCeEEEEEecCCCC--C-CC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHc-
Q 003523 530 IRVEDINALQLIPKELSLKIVSKIEAGEDFRVYIVIPMWPE--G-VP--ESASVQAILGWQRRTIEMMYADVAQAIQKK- 603 (813)
Q Consensus 530 ~~~~~~~~~n~i~~~~a~~i~~a~~~g~~v~V~IvlP~~p~--g-~~--~~~~~~~i~~~~~~t~~~~~~~i~~~L~~~- 603 (813)
+..+.|+|+.+|+++|++|+++|++|+|+||||++|+ | .+ ++.++++||+||++||++|+.+|+++|+++
T Consensus 761 ----~~~i~N~I~~AL~~RI~rA~~~~~~frviIViP~~P~F~G~v~~~~~~svr~Im~~Q~~tI~rG~~Si~~~L~~~~ 836 (1068)
T PLN02866 761 ----DDTIQNRVLEALYRRILRAHKEKKCFRVIIVIPLLPGFQGGVDDGGAASVRAIMHWQYRTICRGKNSILHNLYDLL 836 (1068)
T ss_pred ----cccccchHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcCCCCCCccchhHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 2356899999999999999999999999999999997 3 22 456899999999999999999999999985
Q ss_pred CCCCCCCCCceEEeecCCccccccCCCCCCCCCCchHHHHHhhccceEEEeeeEEEEeceEEEEcccccCcccccCCCCc
Q 003523 604 GLDDAYPRDYLTFFCLGNRENIEEYNPEQSSESNSDYYKAQKARRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGARDT 683 (813)
Q Consensus 604 gv~~~~~~~yl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHsK~mIVDD~~~~iGSaNin~RS~~~~~Ds 683 (813)
|. +|.||++||||++++.... ++++. .++||||||+|||||++++|||||||+|||.|+|||
T Consensus 837 g~---~p~dYisf~~LRn~~~l~~---------~~~~v------teqIYVHsK~~IvDD~~~iiGSaNiN~RS~~G~rDs 898 (1068)
T PLN02866 837 GP---KTHDYISFYGLRAYGRLFE---------GGPLA------TSQIYVHSKIMIVDDRAALIGSANINDRSLLGSRDS 898 (1068)
T ss_pred CC---CHHHeEeeecccccccccC---------CCccc------ceeeEEEeeEEEEcCcEEEEccccccccccccCcCc
Confidence 44 3889999999999854211 11111 237999999999999999999999999999999999
Q ss_pred ceEEeeecCCccCCC--C---chhhhHHHHHHHHHHHhhCCCc---ccCCCCCChHHHH-HHHHHHHHHHHHhh------
Q 003523 684 EIAMGAFQPRHLNTT--E---PARGQIYGFRIALWYEHLGILK---TSFNNPESSECVR-LVNHIADQHWQMYT------ 748 (813)
Q Consensus 684 Ei~v~i~~~~~~~~~--~---~~~~~~~~lR~~Lw~ehlG~~~---~~~~~p~~~~~~~-~~~~~a~~n~~~~~------ 748 (813)
|+++++.|+.++.+. + .+++++++||++||+||||+.. +.+.||.+.++++ .|+..|..|..+|.
T Consensus 899 Eia~~~~d~~~~~s~m~G~~~~ag~fa~~lR~~L~~EHLG~~~~~~~~~~DP~~d~~~k~~W~~~A~~Nt~Iy~~vF~c~ 978 (1068)
T PLN02866 899 EIGVVIEDKEFVDSSMNGKPWKAGKFAHSLRLSLWSEHLGLRAGEIDKIIDPVCDTTYKDLWMATAKTNTDIYQDVFSCI 978 (1068)
T ss_pred ceeeeeecccccccccCCccccccchhHHHHHHHHHHHhCCCchhhhcccCCccHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999887643 1 5678999999999999999975 3567999988886 48999999998772
Q ss_pred ---------------c-------------------------------C--CCCCCCCcceeecccccCCCCccccCCC
Q 003523 749 ---------------A-------------------------------K--QPIRDLPGFLLRYPIEVTRDGVVKNLEG 778 (813)
Q Consensus 749 ---------------~-------------------------------~--~~~~~~~g~l~~~p~~~~~~~~~~~~~~ 778 (813)
+ + +...+++|||+.||+.+.++..++|--+
T Consensus 979 P~d~Vr~~~~~~~~~~~~~~~~gh~~i~lg~~~~~~~~~~~~~~~~~~~~~~l~~I~G~lV~fPL~Fl~~E~L~p~~~ 1056 (1068)
T PLN02866 979 PNDLIHSRAALRQSMASRKEKLGHTTIDLGIAPEKLESYENGDIKSSDPMERLKSVRGHLVSFPLDFMCQEDLRPVFN 1056 (1068)
T ss_pred CCcccccHHHHHHHhhhcccccCccccccccccccccccccccchhhhHHHHHhhceEEEEechhhhhhhccCCCCcC
Confidence 0 0 0024678999999999998887666544
No 6
>PRK12452 cardiolipin synthetase; Reviewed
Probab=100.00 E-value=7.1e-49 Score=451.62 Aligned_cols=345 Identities=21% Similarity=0.281 Sum_probs=257.1
Q ss_pred ccccccCcEEEEeeeccCCCCCCCCcccCCCCcccchhhHHHHHHHHHhcccEEEEEEeccCCceeEecCCCCCCCCCCc
Q 003523 162 YFGQRQGCKVTLYQDAHVLDDFKPKIPLSNGEYYESHRCWEDIFDAIASAEHFIYMTGWSMYAPITLLRDPRRIKPKGNI 241 (813)
Q Consensus 162 ~~p~~~gn~v~l~~d~~~~~~~~p~~~~~~g~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~g~~~ 241 (813)
.+|...||+++++.|| ++.|++++++|++||++|+|+.|+|. ++.. | .
T Consensus 133 ~~p~~~~n~~~ll~~g--------------------~~~~~~l~~~I~~Ak~~I~i~~yi~~-------~d~~---g--~ 180 (509)
T PRK12452 133 GGPAADRTTTKLLTNG--------------------DQTFSEILQAIEQAKHHIHIQYYIYK-------SDEI---G--T 180 (509)
T ss_pred CCcccCCCEEEEeCCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEEe-------CCcH---H--H
Confidence 3789999999999997 46899999999999999999977553 3443 3 2
Q ss_pred hhhhhhHHHHHHHHHHHHHcCCeEEEEEecCCCCcccccccCcCCCCcHHHHHHHhcCCCEEEEcCCCCCcccccccccc
Q 003523 242 TAEEMLKTTLGDLLKKKADEGVKVLLLIWDDRTSVDILKEDGLMGTHDEETADYFRKTKVRCVLCPRTSEIFTNIRGYQT 321 (813)
Q Consensus 242 ~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~~~~g~~~t~~~~~~~~l~~~gV~~~~~~~~p~~~~~~~~~~~ 321 (813)
.+.++|++||+|||+||||+ |+.||..+ .....+.|+++||+|..+++.. ..+. ..
T Consensus 181 --------~i~~aL~~aa~rGV~VRiL~-D~~Gs~~~----------~~~~~~~L~~aGi~v~~f~P~~--~~~~---~~ 236 (509)
T PRK12452 181 --------KVRDALIKKAKDGVIVRFLY-DGLGSNTL----------RRRFLQPMKEAGIEIVEFDPIF--SAWL---LE 236 (509)
T ss_pred --------HHHHHHHHHHHCCCEEEEEE-ECCCCCCC----------CHHHHHHHHhCCeEEEEecCcc--cccc---cc
Confidence 89999999999999999996 99987532 2456788999999998876431 1111 22
Q ss_pred ccccccccceEEEcCCCCCCCCCcceeEEEEccccCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCcc
Q 003523 322 SSIFTHHQKTVVVDSEVPGGGTQKRRVVSFVGGIDLCDGRYDTQEHSLFRTLKTIHRDDFHQPNFPGSSIEKGGPREPWH 401 (813)
Q Consensus 322 ~~~~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~nl~~~r~Dt~~H~~~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWh 401 (813)
..++|||||++|||++ +||+||+|+++++.. . .....+||
T Consensus 237 ~~n~RnHRKi~VIDg~-----------ia~~GG~Ni~d~y~~-~----------------------------~~~~~~Wr 276 (509)
T PRK12452 237 TVNYRNHRKIVIVDGE-----------IGFTGGLNVGDEYLG-R----------------------------SKKFPVWR 276 (509)
T ss_pred cccCCCCCeEEEEcCC-----------EEEeCCcccchhhcC-C----------------------------CCCCCCce
Confidence 4678999999999999 999999999996432 1 11246899
Q ss_pred ccceeeeChHHHHHHHHHHHHHhhccCCCCCCCCcCc-ccccCCCCCcCcCCCCceeeEEeeccccCcccCCCCChHHHh
Q 003523 402 DIHCKLEGPVAWDVLYNFEQRWTKQADKKDLFPPESL-HQNLIHPLLDTSKDLESWNVQIFRSIDGTAAADFPTDPFEAA 480 (813)
Q Consensus 402 D~~~~i~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~ 480 (813)
|+|++++||+|.+++..|.++|+.+++.......... .....|+.+ ...+...+|++.|-+
T Consensus 277 D~~~~i~Gp~V~~l~~~F~~dW~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~q~~~sgp--------------- 338 (509)
T PRK12452 277 DSHLKVEGKALYKLQAIFLEDWLYASSGLNTYSWDPFMNRQYFPGKE---ISNAEGAVQIVASGP--------------- 338 (509)
T ss_pred EEEEEEECHHHHHHHHHHHHHHHHhhCcccccccccccchhcCCCcc---ccCCCeEEEEEeCCC---------------
Confidence 9999999999999999999999987653111000000 000111110 112344678876632
Q ss_pred hhccccCCCCcchhHHHHHHHHHHHhccceEEEeeccccccccCccccccccchhhhhccchHHHHHHHHHHHHcCCCeE
Q 003523 481 RVGLITGKDNVFDRSIQDAYINAIRRAKNFIYIENQYFIGSSYGWLSKDIRVEDINALQLIPKELSLKIVSKIEAGEDFR 560 (813)
Q Consensus 481 ~~~l~~~~~~~~~~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~~~~~~~~~~~~~~~n~i~~~~a~~i~~a~~~g~~v~ 560 (813)
...+.+|.++|+++|.+||++|||++|||++ +. .+..+|..|++|| |+
T Consensus 339 ---------~~~~~~i~~~~l~~I~~A~~~I~I~tpYf~p------d~---------------~l~~aL~~Aa~rG--V~ 386 (509)
T PRK12452 339 ---------SSDDKSIRNTLLAVMGSAKKSIWIATPYFIP------DQ---------------ETLTLLRLSAISG--ID 386 (509)
T ss_pred ---------CchhHHHHHHHHHHHHHhhhEEEEECCccCC------CH---------------HHHHHHHHHHHcC--CE
Confidence 1225689999999999999999999999995 22 5677888888999 99
Q ss_pred EEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCceEEeecCCccccccCCCCCCCCCCchH
Q 003523 561 VYIVIPMWPEGVPESASVQAILGWQRRTIEMMYADVAQAIQKKGLDDAYPRDYLTFFCLGNRENIEEYNPEQSSESNSDY 640 (813)
Q Consensus 561 V~IvlP~~p~g~~~~~~~~~i~~~~~~t~~~~~~~i~~~L~~~gv~~~~~~~yl~~~~l~~~~~~~~~~~~~~~~~~~~~ 640 (813)
|+|++|..++ +.+.+|+.++ +++.|.++|++++ +|.+
T Consensus 387 Vrii~p~~~D--------~~~~~~a~~~-------~~~~L~~aGv~I~------------------~y~~---------- 423 (509)
T PRK12452 387 VRILYPGKSD--------SIISDQASQS-------YFTPLLKAGASIY------------------SYKD---------- 423 (509)
T ss_pred EEEEcCCCCC--------hHHHHHHHHH-------HHHHHHHcCCEEE------------------EecC----------
Confidence 9999997432 2333444443 5788999999875 3443
Q ss_pred HHHHhhccceEEEeeeEEEEeceEEEEcccccCcccccCCCCcceEEeeecCCccCCCCchhhhHHHHHHHHHH
Q 003523 641 YKAQKARRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGARDTEIAMGAFQPRHLNTTEPARGQIYGFRIALWY 714 (813)
Q Consensus 641 ~~~~~~~~~~iyvHsK~mIVDD~~~~iGSaNin~RS~~~~~DsEi~v~i~~~~~~~~~~~~~~~~~~lR~~Lw~ 714 (813)
.++|+|+|||||++++|||+|||.||+..| .|+++.++++..+ .++.....+.|.
T Consensus 424 ----------~~lHaK~~ivD~~~a~vGS~Nld~RS~~~n--~E~~~~i~~~~~~-------~~l~~~f~~d~~ 478 (509)
T PRK12452 424 ----------GFMHAKIVLVDDKIATIGTANMDVRSFELN--YEIISVLYESETV-------HDIKRDFEDDFK 478 (509)
T ss_pred ----------CCeeeeEEEECCCEEEEeCcccCHhHhhhh--hhccEEEECHHHH-------HHHHHHHHHHHH
Confidence 389999999999999999999999999755 9999999987532 235555566664
No 7
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=100.00 E-value=1.9e-47 Score=439.21 Aligned_cols=345 Identities=22% Similarity=0.364 Sum_probs=258.0
Q ss_pred ccccccCcEEEEeeeccCCCCCCCCcccCCCCcccchhhHHHHHHHHHhcccEEEEEEeccCCceeEecCCCCCCCCCCc
Q 003523 162 YFGQRQGCKVTLYQDAHVLDDFKPKIPLSNGEYYESHRCWEDIFDAIASAEHFIYMTGWSMYAPITLLRDPRRIKPKGNI 241 (813)
Q Consensus 162 ~~p~~~gn~v~l~~d~~~~~~~~p~~~~~~g~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~g~~~ 241 (813)
.+|...||+|+++.|| ++.|++|+++|++||++|+|+.|++ +++.. | .
T Consensus 109 ~~~~~~~n~v~ll~~g--------------------~~~~~~l~~~I~~Ak~~I~l~~yi~-------~~d~~---g--~ 156 (483)
T PRK01642 109 GIPGLKGNQLRLLTNG--------------------DETFQAIIRDIELARHYILMEFYIW-------RPDGL---G--D 156 (483)
T ss_pred CCCccCCCEEEEEcCH--------------------HHHHHHHHHHHHHhhcEEEEEEEEE-------ccCCc---H--H
Confidence 3788999999999996 4688999999999999999998755 34443 3 2
Q ss_pred hhhhhhHHHHHHHHHHHHHcCCeEEEEEecCCCCcccccccCcCCCCcHHHHHHHhcCCCEEEEcCCCCCcccccccccc
Q 003523 242 TAEEMLKTTLGDLLKKKADEGVKVLLLIWDDRTSVDILKEDGLMGTHDEETADYFRKTKVRCVLCPRTSEIFTNIRGYQT 321 (813)
Q Consensus 242 ~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~~~~g~~~t~~~~~~~~l~~~gV~~~~~~~~p~~~~~~~~~~~ 321 (813)
++.++|++||+|||+||||+ |+.|+..+. .....+.|+++||++..+.+... ..+ ...
T Consensus 157 --------~i~~aL~~aa~rGV~VriL~-D~~Gs~~~~---------~~~~~~~L~~~Gi~v~~~~p~~~-~~~---~~~ 214 (483)
T PRK01642 157 --------QVAEALIAAAKRGVRVRLLY-DSIGSFAFF---------RSPYPEELRNAGVEVVEFLKVNL-GRV---FRR 214 (483)
T ss_pred --------HHHHHHHHHHHCCCEEEEEE-ECCCCCCCC---------cHHHHHHHHHCCCEEEEecCCCc-ccc---ccc
Confidence 89999999999999999996 998875331 23467789999999987742211 111 123
Q ss_pred ccccccccceEEEcCCCCCCCCCcceeEEEEccccCCC-ccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCc
Q 003523 322 SSIFTHHQKTVVVDSEVPGGGTQKRRVVSFVGGIDLCD-GRYDTQEHSLFRTLKTIHRDDFHQPNFPGSSIEKGGPREPW 400 (813)
Q Consensus 322 ~~~~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~nl~~-~r~Dt~~H~~~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pW 400 (813)
..++|+|+|++|||++ +||+||+|+++ ++... .....+|
T Consensus 215 ~~n~RnHrKi~VIDg~-----------ia~~Gg~Ni~d~~y~~~-----------------------------~~~~~~w 254 (483)
T PRK01642 215 RLDLRNHRKIVVIDGY-----------IAYTGSMNVVDPEYFKQ-----------------------------DPGVGQW 254 (483)
T ss_pred ccccccCceEEEEcCC-----------EEEeCCcccCCHHHhCC-----------------------------CCCCCCc
Confidence 4578999999999999 99999999999 54321 1123689
Q ss_pred cccceeeeChHHHHHHHHHHHHHhhccCCCCCCCCcCcccccCCCCCcCcCCCCceeeEEeeccccCcccCCCCChHHHh
Q 003523 401 HDIHCKLEGPVAWDVLYNFEQRWTKQADKKDLFPPESLHQNLIHPLLDTSKDLESWNVQIFRSIDGTAAADFPTDPFEAA 480 (813)
Q Consensus 401 hD~~~~i~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~ 480 (813)
||+|++++||+|.+++..|.++|+.++++........+ ..++. ..++...+|++.|-+
T Consensus 255 ~D~~~~i~Gp~v~~l~~~F~~dW~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~qi~~sgP--------------- 312 (483)
T PRK01642 255 RDTHVRIEGPVVTALQLIFAEDWEWETGERILPPPPDV---LIMPF----EEASGHTVQVIASGP--------------- 312 (483)
T ss_pred EEEEEEEEcHHHHHHHHHHHHHHHHHhCcccCCCCccc---ccCCc----cCCCCceEEEEeCCC---------------
Confidence 99999999999999999999999988764211111000 00110 122345678876532
Q ss_pred hhccccCCCCcchhHHHHHHHHHHHhccceEEEeeccccccccCccccccccchhhhhccchHHHHHHHHHHHHcCCCeE
Q 003523 481 RVGLITGKDNVFDRSIQDAYINAIRRAKNFIYIENQYFIGSSYGWLSKDIRVEDINALQLIPKELSLKIVSKIEAGEDFR 560 (813)
Q Consensus 481 ~~~l~~~~~~~~~~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~~~~~~~~~~~~~~~n~i~~~~a~~i~~a~~~g~~v~ 560 (813)
...+..++++|+++|.+||++|||++|||+++ ..+..+|..|++|| |+
T Consensus 313 ---------~~~~~~~~~~~~~~I~~A~~~I~I~tpYfip~---------------------~~i~~aL~~Aa~rG--V~ 360 (483)
T PRK01642 313 ---------GDPEETIHQFLLTAIYSARERLWITTPYFVPD---------------------EDLLAALKTAALRG--VD 360 (483)
T ss_pred ---------CChhhHHHHHHHHHHHHhccEEEEEcCCcCCC---------------------HHHHHHHHHHHHcC--CE
Confidence 12256899999999999999999999999952 25678888999999 99
Q ss_pred EEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCceEEeecCCccccccCCCCCCCCCCchH
Q 003523 561 VYIVIPMWPEGVPESASVQAILGWQRRTIEMMYADVAQAIQKKGLDDAYPRDYLTFFCLGNRENIEEYNPEQSSESNSDY 640 (813)
Q Consensus 561 V~IvlP~~p~g~~~~~~~~~i~~~~~~t~~~~~~~i~~~L~~~gv~~~~~~~yl~~~~l~~~~~~~~~~~~~~~~~~~~~ 640 (813)
|+|++|..++ . .+.+|..++ .++.|.++|++++ +|.+
T Consensus 361 Vril~p~~~d----~----~~~~~~~~~-------~~~~L~~~Gv~I~------------------~y~~---------- 397 (483)
T PRK01642 361 VRIIIPSKND----S----LLVFWASRA-------FFTELLEAGVKIY------------------RYEG---------- 397 (483)
T ss_pred EEEEeCCCCC----c----HHHHHHHHH-------HHHHHHHcCCEEE------------------EeCC----------
Confidence 9999997543 2 234454444 4678888999874 3443
Q ss_pred HHHHhhccceEEEeeeEEEEeceEEEEcccccCcccccCCCCcceEEeeecCCccCCCCchhhhHHHHHHHHHHHh
Q 003523 641 YKAQKARRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGARDTEIAMGAFQPRHLNTTEPARGQIYGFRIALWYEH 716 (813)
Q Consensus 641 ~~~~~~~~~~iyvHsK~mIVDD~~~~iGSaNin~RS~~~~~DsEi~v~i~~~~~~~~~~~~~~~~~~lR~~Lw~eh 716 (813)
.++|||+|||||++++|||+|||.||+..| .|+++.++++..+ .++.+...+.|+..
T Consensus 398 ----------~~~HaK~~ivD~~~~~vGS~N~d~rS~~~N--~E~~~~i~d~~~~-------~~l~~~f~~d~~~s 454 (483)
T PRK01642 398 ----------GLLHTKSVLVDDELALVGTVNLDMRSFWLN--FEITLVIDDTGFA-------ADLAAMQEDYFARS 454 (483)
T ss_pred ----------CceEeEEEEECCCEEEeeCCcCCHhHHhhh--hcceEEEECHHHH-------HHHHHHHHHHHHhC
Confidence 289999999999999999999999999755 9999999987532 23555666666544
No 8
>PRK11263 cardiolipin synthase 2; Provisional
Probab=100.00 E-value=4.3e-47 Score=425.22 Aligned_cols=342 Identities=22% Similarity=0.293 Sum_probs=253.0
Q ss_pred ccccCcEEEEeeeccCCCCCCCCcccCCCCcccchhhHHHHHHHHHhcccEEEEEEeccCCceeEecCCCCCCCCCCchh
Q 003523 164 GQRQGCKVTLYQDAHVLDDFKPKIPLSNGEYYESHRCWEDIFDAIASAEHFIYMTGWSMYAPITLLRDPRRIKPKGNITA 243 (813)
Q Consensus 164 p~~~gn~v~l~~d~~~~~~~~p~~~~~~g~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~g~~~~~ 243 (813)
+++.||+|+|+.|| +++|++++++|++||++|+|++|+|.+ +.. | .
T Consensus 3 ~~~~gN~v~ll~~G--------------------~e~~~~l~~~I~~Ak~~I~i~~yi~~~-------d~~---g--~-- 48 (411)
T PRK11263 3 SWREGNRIQLLENG--------------------EQYYPRVFEAIAAAQEEILLETFILFE-------DKV---G--K-- 48 (411)
T ss_pred cccCCCeEEEEeCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEEec-------Cch---H--H--
Confidence 68899999999997 467899999999999999999986542 332 3 3
Q ss_pred hhhhHHHHHHHHHHHHHcCCeEEEEEecCCCCcccccccCcCCCCcHHHHHHHhcCCCEEEEcCCCCCcccccccccccc
Q 003523 244 EEMLKTTLGDLLKKKADEGVKVLLLIWDDRTSVDILKEDGLMGTHDEETADYFRKTKVRCVLCPRTSEIFTNIRGYQTSS 323 (813)
Q Consensus 244 ~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~~~~g~~~t~~~~~~~~l~~~gV~~~~~~~~p~~~~~~~~~~~~~ 323 (813)
.|.++|++||+|||+|+||+ |..++..+ +....+.|.++||+++.+.+.+. + .......
T Consensus 49 ------~l~~aL~~aa~rGV~Vril~-D~~gs~~~----------~~~~~~~L~~aGv~v~~~~p~~~---~-~~~~~~~ 107 (411)
T PRK11263 49 ------QLHAALLAAAQRGVKVEVLV-DGYGSPDL----------SDEFVNELTAAGVRFRYFDPRPR---L-LGMRTNL 107 (411)
T ss_pred ------HHHHHHHHHHHCCCEEEEEE-ECCCCCCC----------CHHHHHHHHHCCeEEEEeCCccc---c-ccccccc
Confidence 89999999999999999997 99876532 24667889999999988764321 1 1112223
Q ss_pred ccccccceEEEcCCCCCCCCCcceeEEEEccccCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCcccc
Q 003523 324 IFTHHQKTVVVDSEVPGGGTQKRRVVSFVGGIDLCDGRYDTQEHSLFRTLKTIHRDDFHQPNFPGSSIEKGGPREPWHDI 403 (813)
Q Consensus 324 ~~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~nl~~~r~Dt~~H~~~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhD~ 403 (813)
+.++|+|++|||++ +|||||+|++++++.. .+..+|+|+
T Consensus 108 ~~R~HrKiiVIDg~-----------~a~vGg~N~~~~~~~~------------------------------~g~~~w~D~ 146 (411)
T PRK11263 108 FRRMHRKIVVIDGR-----------IAFVGGINYSADHLSD------------------------------YGPEAKQDY 146 (411)
T ss_pred ccCCcceEEEEcCC-----------EEEEcCeEchHhhccc------------------------------cCCCCceEE
Confidence 46999999999999 9999999999864320 012469999
Q ss_pred ceeeeChHHHHHHHHHHHHHhhccCCCCCCCCcCcccccCCCCCcCcCCCCceeeEEeeccccCcccCCCCChHHHhhhc
Q 003523 404 HCKLEGPVAWDVLYNFEQRWTKQADKKDLFPPESLHQNLIHPLLDTSKDLESWNVQIFRSIDGTAAADFPTDPFEAARVG 483 (813)
Q Consensus 404 ~~~i~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~ 483 (813)
|++|+||+|.+++..|.+.|......... ..... .++. ....+...+|++.+
T Consensus 147 ~v~i~Gp~V~~l~~~f~~~w~~~~~~~~~--~~~~~---~~~~---~~~~g~~~~~~v~~-------------------- 198 (411)
T PRK11263 147 AVEVEGPVVADIHQFELEALPGQSAARRW--WRRHH---RAEE---NRQPGEAQALLVWR-------------------- 198 (411)
T ss_pred EEEEECHHHHHHHHHHHHHHhhcccchhh--hcccc---cCcc---cCCCCCeEEEEEEC--------------------
Confidence 99999999999999999999754211000 00000 0000 01223334555433
Q ss_pred cccCCCCcchhHHHHHHHHHHHhccceEEEeeccccccccCccccccccchhhhhccchHHHHHHHHHHHHcCCCeEEEE
Q 003523 484 LITGKDNVFDRSIQDAYINAIRRAKNFIYIENQYFIGSSYGWLSKDIRVEDINALQLIPKELSLKIVSKIEAGEDFRVYI 563 (813)
Q Consensus 484 l~~~~~~~~~~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~~~~~~~~~~~~~~~n~i~~~~a~~i~~a~~~g~~v~V~I 563 (813)
.+......|+++|+++|.+||+.|||+||||++. ..+..+|..|++|| |+|+|
T Consensus 199 ----~p~~~~~~i~~~~~~~i~~A~~~I~I~tpYf~p~---------------------~~l~~aL~~Aa~RG--V~V~i 251 (411)
T PRK11263 199 ----DNEEHRDDIERHYLKALRQARREVIIANAYFFPG---------------------YRLLRALRNAARRG--VRVRL 251 (411)
T ss_pred ----CCcchHHHHHHHHHHHHHHhceEEEEEecCcCCC---------------------HHHHHHHHHHHHCC--CEEEE
Confidence 1222256899999999999999999999999952 25678888999999 99999
Q ss_pred EecCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCceEEeecCCccccccCCCCCCCCCCchHHHH
Q 003523 564 VIPMWPEGVPESASVQAILGWQRRTIEMMYADVAQAIQKKGLDDAYPRDYLTFFCLGNRENIEEYNPEQSSESNSDYYKA 643 (813)
Q Consensus 564 vlP~~p~g~~~~~~~~~i~~~~~~t~~~~~~~i~~~L~~~gv~~~~~~~yl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 643 (813)
|+|..| + +.++.+..+. +++.|.++|++++ +|.+
T Consensus 252 i~~~~~----d----~~~~~~a~~~-------~~~~Ll~~Gv~I~------------------~y~~------------- 285 (411)
T PRK11263 252 ILQGEP----D----MPIVRVGARL-------LYNYLLKGGVQIY------------------EYCR------------- 285 (411)
T ss_pred EeCCCC----C----cHHHHHHHHH-------HHHHHHHCCCEEE------------------EecC-------------
Confidence 999643 2 2333444433 5788999999875 3433
Q ss_pred HhhccceEEEeeeEEEEeceEEEEcccccCcccccCCCCcceEEeeecCCccCCCCchhhhHHHHHHHHHHHhhC
Q 003523 644 QKARRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGARDTEIAMGAFQPRHLNTTEPARGQIYGFRIALWYEHLG 718 (813)
Q Consensus 644 ~~~~~~~iyvHsK~mIVDD~~~~iGSaNin~RS~~~~~DsEi~v~i~~~~~~~~~~~~~~~~~~lR~~Lw~ehlG 718 (813)
.++|+|+|||||++++|||+|||.|||..| .|+++.++|+..+ .++......++++|.-
T Consensus 286 -------~~lHaK~~viD~~~~~vGS~Nld~rS~~lN--~E~~~~i~d~~~a-------~~l~~~~~~~~~~~s~ 344 (411)
T PRK11263 286 -------RPLHGKVALMDDHWATVGSSNLDPLSLSLN--LEANLIIRDRAFN-------QTLRDNLNGLIAADCQ 344 (411)
T ss_pred -------CCceeEEEEECCCEEEEeCCcCCHHHhhhh--hhcCEEEeCHHHH-------HHHHHHHHHHHHhhCE
Confidence 279999999999999999999999999655 9999999987542 3466677777777754
No 9
>PHA02820 phospholipase-D-like protein; Provisional
Probab=100.00 E-value=2.2e-35 Score=332.07 Aligned_cols=343 Identities=13% Similarity=0.129 Sum_probs=221.6
Q ss_pred hhHHHHHHHHHhcccEEEEEEeccCCceeEecCCCCCCCCCCchhhhhhHHHHHHHHHHHHHcCCeEEEEEecCCCCccc
Q 003523 199 RCWEDIFDAIASAEHFIYMTGWSMYAPITLLRDPRRIKPKGNITAEEMLKTTLGDLLKKKADEGVKVLLLIWDDRTSVDI 278 (813)
Q Consensus 199 ~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~g~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~ 278 (813)
..++.+.++|.+||++|+|+++.|.| .+......| . +|.++|++||+|||+||||+ |..+.
T Consensus 26 ~t~~~~~~lI~~Ak~~I~I~s~yf~~-----~d~~~~~~G--~--------~i~~aL~~aA~rGV~VRIL~-d~~~~--- 86 (424)
T PHA02820 26 STFNFWREILSNTTKTLDISSFYWSL-----SDEVGTNFG--T--------MILNEIIQLPKRGVRVRIAV-NKSNK--- 86 (424)
T ss_pred CHHHHHHHHHHhhCcEEEEEeEEEec-----CccccchhH--H--------HHHHHHHHHHHCCCEEEEEE-CCCCC---
Confidence 46789999999999999999975542 121100012 2 89999999999999999997 85321
Q ss_pred ccccCcCCCCcHHHHHHHhcCCCEEEEcCCCCCccccccccccccccccccceEEEcCCCCCCCCCcceeEEEEccccCC
Q 003523 279 LKEDGLMGTHDEETADYFRKTKVRCVLCPRTSEIFTNIRGYQTSSIFTHHQKTVVVDSEVPGGGTQKRRVVSFVGGIDLC 358 (813)
Q Consensus 279 ~~~~g~~~t~~~~~~~~l~~~gV~~~~~~~~p~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~nl~ 358 (813)
.....+.|+++||+++.+++.. ...+++|+|++|||++ ++|+||+|+.
T Consensus 87 ----------~~~~~~~L~~aGv~v~~~~~~~-----------~~~~~~HrK~~VIDg~-----------~~~iGS~Nid 134 (424)
T PHA02820 87 ----------PLKDVELLQMAGVEVRYIDITN-----------ILGGVLHTKFWISDNT-----------HIYLGSANMD 134 (424)
T ss_pred ----------chhhHHHHHhCCCEEEEEecCC-----------CCcccceeeEEEECCC-----------EEEEeCCcCC
Confidence 1133467888999998775221 1236799999999999 9999999997
Q ss_pred CccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCccccceee--eChHHHHHHHHHHHHHhhccCCCCCCCCc
Q 003523 359 DGRYDTQEHSLFRTLKTIHRDDFHQPNFPGSSIEKGGPREPWHDIHCKL--EGPVAWDVLYNFEQRWTKQADKKDLFPPE 436 (813)
Q Consensus 359 ~~r~Dt~~H~~~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhD~~~~i--~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~ 436 (813)
+ |+-+ ..+|+++++ +||+|.+++..|.++|+..++........
T Consensus 135 ~-rsl~----------------------------------~n~E~gv~i~~~g~~v~~L~~~F~~dW~~~~~~~~~~~~~ 179 (424)
T PHA02820 135 W-RSLT----------------------------------QVKELGIAIFNNSNLAADLTQIFEVYWYLGVNNLPYNWKN 179 (424)
T ss_pred h-hhhh----------------------------------hCCceEEEEecchHHHHHHHHHHHHHHHhhccCCCCcccc
Confidence 6 3311 125677777 79999999999999999775321100000
Q ss_pred CcccccCCCCCcCcCCCCceeeEEeeccccCcccCCCCChHHHhhhccccCCCCcchhHHHHHHHHHHHhccceEEEeec
Q 003523 437 SLHQNLIHPLLDTSKDLESWNVQIFRSIDGTAAADFPTDPFEAARVGLITGKDNVFDRSIQDAYINAIRRAKNFIYIENQ 516 (813)
Q Consensus 437 ~~~~~~~p~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~sI~~ayl~aI~~Ak~~IyIEnq 516 (813)
.++....+..|......+....+++.+.+ ... ++ .......++|+.+|.+||++|||+++
T Consensus 180 ~~~~~~~~~~p~~~~~~~~~~~~~~sssP-----------~~~------~~---~~r~~~~~~~l~~I~~Ak~~I~I~tp 239 (424)
T PHA02820 180 FYPLYYNTDHPLSLNVSGVPHSVFIASAP-----------QQL------CT---MERTNDLTALLSCIRNASKFVYVSVM 239 (424)
T ss_pred ccccccccCCCcccccCCccceEEEeCCC-----------hhh------cC---CCCCchHHHHHHHHHHHhhEEEEEEc
Confidence 00000001011000011111123332211 100 00 00123579999999999999999999
Q ss_pred ccccccc-------CccccccccchhhhhccchHHHHHHHHH-HHHcCCCeEEEEEecCCCCCCCCchhHHHHHHHHHHH
Q 003523 517 YFIGSSY-------GWLSKDIRVEDINALQLIPKELSLKIVS-KIEAGEDFRVYIVIPMWPEGVPESASVQAILGWQRRT 588 (813)
Q Consensus 517 YFi~~~~-------~~~~~~~~~~~~~~~n~i~~~~a~~i~~-a~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~~t 588 (813)
||+|..+ .|| .+..+|.+ |++|| |+|+|++|.|++..+ + .|+.
T Consensus 240 yfvP~~~~~~~~~~yw~-----------------~i~~AL~~AA~~RG--V~VriLvp~~~d~~~----~----~~a~-- 290 (424)
T PHA02820 240 NFIPIIYSKAGKILFWP-----------------YIEDELRRAAIDRK--VSVKLLISCWQRSSF----I----MRNF-- 290 (424)
T ss_pred cccceeeccCCcccchH-----------------HHHHHHHHHHHhCC--CEEEEEEeccCCCCc----c----HHHH--
Confidence 9998732 343 45677774 66799 999999999875322 1 1211
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCceEEeecCCccccccCCCCCCCCCCchHHHHHhhccceEEEeeeEEEEeceEEEEc
Q 003523 589 IEMMYADVAQAIQKKGLDDAYPRDYLTFFCLGNRENIEEYNPEQSSESNSDYYKAQKARRFMIYVHSKMMIVDDEYIIIG 668 (813)
Q Consensus 589 ~~~~~~~i~~~L~~~gv~~~~~~~yl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHsK~mIVDD~~~~iG 668 (813)
...++.|.++|++++ +++|.... +.+ ..|. ..++|||+||||| ++.||
T Consensus 291 -----~~~l~~L~~~gv~I~-----Vk~y~~p~------~~~-~~~~--------------~~f~HaK~~vvD~-~a~IG 338 (424)
T PHA02820 291 -----LRSIAMLKSKNINIE-----VKLFIVPD------ADP-PIPY--------------SRVNHAKYMVTDK-TAYIG 338 (424)
T ss_pred -----HHHHHHHhccCceEE-----EEEEEcCc------ccc-cCCc--------------ceeeeeeEEEEcc-cEEEE
Confidence 123577778898874 66663211 111 0011 2399999999997 69999
Q ss_pred ccccCcccccCCCCcceEEeeecCCccCCCCchhhhHHHHHHHHHH
Q 003523 669 SANINQRSMDGARDTEIAMGAFQPRHLNTTEPARGQIYGFRIALWY 714 (813)
Q Consensus 669 SaNin~RS~~~~~DsEi~v~i~~~~~~~~~~~~~~~~~~lR~~Lw~ 714 (813)
|||||.||+..| .|+++.++++.. ...+.++.+...+.|.
T Consensus 339 TsN~D~rsf~~n--~ev~~~i~~~~~----~~~~~~l~~~F~~D~~ 378 (424)
T PHA02820 339 TSNWTGNYFTDT--CGVSINITPDDG----LGLRQQLEDIFIRDWN 378 (424)
T ss_pred CCcCCHHHHhcc--CcEEEEEecCCc----HHHHHHHHHHHHHhcC
Confidence 999999999877 999999987631 1133456666677774
No 10
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=100.00 E-value=1.5e-34 Score=330.75 Aligned_cols=334 Identities=25% Similarity=0.365 Sum_probs=237.2
Q ss_pred ccCcEEEEeeeccCCCCCCCCcccCCCCcccchhhHHHHHHHHHhcccEEEEEEeccCCceeEecCCCCCCCCCCchhhh
Q 003523 166 RQGCKVTLYQDAHVLDDFKPKIPLSNGEYYESHRCWEDIFDAIASAEHFIYMTGWSMYAPITLLRDPRRIKPKGNITAEE 245 (813)
Q Consensus 166 ~~gn~v~l~~d~~~~~~~~p~~~~~~g~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~g~~~~~~~ 245 (813)
..++.++++.++ .+.|.+++++|++|+++|+++.|. +.++.. | .
T Consensus 57 ~~~~~~~~l~~~--------------------~~~~~~~~~~i~~a~~~I~~~~~i-------~~~d~~---~--~---- 100 (438)
T COG1502 57 ISGNGVDLLKDG--------------------ADAFAALIELIEAAKKSIYLQYYI-------WQDDEL---G--R---- 100 (438)
T ss_pred CCCCceEEecCH--------------------HHHHHHHHHHHHHHhhEEEEEEEE-------EeCChh---H--H----
Confidence 588899999985 467899999999999999998654 344432 2 3
Q ss_pred hhHHHHHHHHHHHHHcCCeEEEEEecCCCCcccccccCcCCCCcHHHHHHHhcCCC-EEEEcCCCCCccccccccccccc
Q 003523 246 MLKTTLGDLLKKKADEGVKVLLLIWDDRTSVDILKEDGLMGTHDEETADYFRKTKV-RCVLCPRTSEIFTNIRGYQTSSI 324 (813)
Q Consensus 246 ~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~~~~g~~~t~~~~~~~~l~~~gV-~~~~~~~~p~~~~~~~~~~~~~~ 324 (813)
.+.++|.++|++||+||+|+ |+.++.... .......+++.++ .+..+.+... .. ......+
T Consensus 101 ----~i~~~l~~~a~~gv~vr~l~-D~~~~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~-~~---~~~~~~~ 162 (438)
T COG1502 101 ----EILDALIEAAKRGVEVRLLL-DDIGSTRGL---------LKSLLALLKRAGIEEVRLFNPASP-RP---LRFRRLN 162 (438)
T ss_pred ----HHHHHHHHHHHcCCEEEEEE-ecCCCcccc---------cHHHHHHHhcCCceEEEecCCccc-cc---chhhhhh
Confidence 89999999999999999998 988773211 2356778889999 6666553321 11 0123457
Q ss_pred cccccceEEEcCCCCCCCCCcceeEEEEccccCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCccccc
Q 003523 325 FTHHQKTVVVDSEVPGGGTQKRRVVSFVGGIDLCDGRYDTQEHSLFRTLKTIHRDDFHQPNFPGSSIEKGGPREPWHDIH 404 (813)
Q Consensus 325 ~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~nl~~~r~Dt~~H~~~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhD~~ 404 (813)
.++|+|++|||+. ++|+||.|+.+.++... ....+|+|++
T Consensus 163 ~r~H~K~~viD~~-----------i~~vGg~N~~d~y~~~~-----------------------------~~~~~~~D~~ 202 (438)
T COG1502 163 RRLHRKIVVIDGK-----------VAFVGGANIGDEYFHKD-----------------------------KGLGYWRDLH 202 (438)
T ss_pred ccccceEEEEcCC-----------EEEecCcccchhhhccC-----------------------------cCcccceeee
Confidence 8999999999999 99999999999865321 0134899999
Q ss_pred eeeeChHHHHHHHHHHHHHhhccCCCCCCCCcCcccccCCCCCc-C-cCCCCceeeEEeeccccCcccCCCCChHHHhhh
Q 003523 405 CKLEGPVAWDVLYNFEQRWTKQADKKDLFPPESLHQNLIHPLLD-T-SKDLESWNVQIFRSIDGTAAADFPTDPFEAARV 482 (813)
Q Consensus 405 ~~i~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~p~~~~-~-~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~ 482 (813)
++++||+|.++...|.++|+............ ..+..+. . ........+|++.+.+... .+
T Consensus 203 ~~~~g~~v~~l~~~f~~~w~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~P~~~---~~--------- 265 (438)
T COG1502 203 VRITGPAVADLARLFIQDWNLESGSSKPLLAL-----VRPPLQSLSLLPVGRGSTVQVLSSGPDKG---LG--------- 265 (438)
T ss_pred EEEECHHHHHHHHHHHHHhhhccCcCcccccc-----cccccccccccccccCcceEEEecCCccc---cc---------
Confidence 99999999999999999999874321110000 0000000 0 0112222356666543210 00
Q ss_pred ccccCCCCcchhHHHHHHHHHHHhccceEEEeeccccccccCccccccccchhhhhccchHHHHHHHHHHHHcCCCeEEE
Q 003523 483 GLITGKDNVFDRSIQDAYINAIRRAKNFIYIENQYFIGSSYGWLSKDIRVEDINALQLIPKELSLKIVSKIEAGEDFRVY 562 (813)
Q Consensus 483 ~l~~~~~~~~~~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~~~~~~~~~~~~~~~n~i~~~~a~~i~~a~~~g~~v~V~ 562 (813)
.....+...|+++|.+|+++|+|++|||++. .++..+|..+.++| |+|+
T Consensus 266 --------~~~~~~~~~~~~~i~~A~~~i~i~~pYf~~~---------------------~~~~~al~~a~~~G--v~V~ 314 (438)
T COG1502 266 --------SELIELNRLLLKAINSARESILIATPYFVPD---------------------RELLAALKAAARRG--VDVR 314 (438)
T ss_pred --------hhhhhHHHHHHHHHHhhceEEEEEcCCcCCC---------------------HHHHHHHHHHHhcC--CEEE
Confidence 0011245899999999999999999999953 25668889999999 9999
Q ss_pred EEecCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCceEEeecCCccccccCCCCCCCCCCchHHH
Q 003523 563 IVIPMWPEGVPESASVQAILGWQRRTIEMMYADVAQAIQKKGLDDAYPRDYLTFFCLGNRENIEEYNPEQSSESNSDYYK 642 (813)
Q Consensus 563 IvlP~~p~g~~~~~~~~~i~~~~~~t~~~~~~~i~~~L~~~gv~~~~~~~yl~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 642 (813)
|++|.. +.++. .+++|..+ ..+..|.+.|++++ +|.+ |
T Consensus 315 ii~~~~--~~~d~----~~~~~~~~-------~~~~~l~~~gv~i~------------------~~~~------g----- 352 (438)
T COG1502 315 IIIPSL--GANDS----AIVHAAYR-------AYLKELLEAGVKVY------------------EYPG------G----- 352 (438)
T ss_pred EEeCCC--CCCCh----HHHHHHHH-------HHHHHHHHhCCEEE------------------EecC------C-----
Confidence 999953 12222 23333333 35788888898764 2332 0
Q ss_pred HHhhccceEEEeeeEEEEeceEEEEcccccCcccccCCCCcceEEeeecCC
Q 003523 643 AQKARRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGARDTEIAMGAFQPR 693 (813)
Q Consensus 643 ~~~~~~~~iyvHsK~mIVDD~~~~iGSaNin~RS~~~~~DsEi~v~i~~~~ 693 (813)
.++|+|+|||||++++|||+|||.||+.+| +|++++++++.
T Consensus 353 --------~~lH~K~~iiD~~~~~vGS~N~~~rS~~lN--~E~~~~i~d~~ 393 (438)
T COG1502 353 --------AFLHSKVMIIDDRTVLVGSANLDPRSLRLN--FEVGLVIEDPE 393 (438)
T ss_pred --------CcceeeEEEEcCCEEEEeCCcCCHhHHHHh--hhheeEEeCHH
Confidence 389999999999999999999999999765 99999999884
No 11
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=100.00 E-value=4.4e-33 Score=314.30 Aligned_cols=341 Identities=15% Similarity=0.121 Sum_probs=219.1
Q ss_pred cccccCcEEEEeeeccCCCCCCCCcccCCCCcccchhhHHHHHHHHHhcccEEEEEEeccCCceeEecCCCCCCCCCCch
Q 003523 163 FGQRQGCKVTLYQDAHVLDDFKPKIPLSNGEYYESHRCWEDIFDAIASAEHFIYMTGWSMYAPITLLRDPRRIKPKGNIT 242 (813)
Q Consensus 163 ~p~~~gn~v~l~~d~~~~~~~~p~~~~~~g~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~g~~~~ 242 (813)
+|+ .+|.|+++.+| .++|++|+++|++|+++|+|++|.|. +|.. | .
T Consensus 20 ~~~-~~~~v~~l~~~--------------------~~f~~~Ll~~I~~Ak~~I~l~~y~~~-------~D~~---g--~- 65 (451)
T PRK09428 20 IPQ-SPDDVETLYSP--------------------ADFRETLLEKIASAKKRIYIVALYLE-------DDEA---G--R- 65 (451)
T ss_pred ccc-CcccEEEEcCH--------------------HHHHHHHHHHHHhcCCeEEEEEEEec-------CCch---H--H-
Confidence 444 57789999985 46789999999999999999987653 3432 3 3
Q ss_pred hhhhhHHHHHHHHHHHHH--cCCeEEEEEecCCCCc-ccccccCcCC-CCcHHHHHHHhcC--CCEEEEcCCCCCccccc
Q 003523 243 AEEMLKTTLGDLLKKKAD--EGVKVLLLIWDDRTSV-DILKEDGLMG-THDEETADYFRKT--KVRCVLCPRTSEIFTNI 316 (813)
Q Consensus 243 ~~~~~~~~l~~lL~~kA~--rGV~VriLvwD~~~s~-~~~~~~g~~~-t~~~~~~~~l~~~--gV~~~~~~~~p~~~~~~ 316 (813)
.|.++|.+|++ +||+|+||+ |...+. ..+. ... ..+..+...|+++ ||++.++.. |..
T Consensus 66 -------~il~AL~~a~~~~~gv~VrvLv-D~~Ra~Rg~iG---~~~~~~~~~~~~~l~~~~~gv~v~~f~~-p~~---- 129 (451)
T PRK09428 66 -------EILDALYQAKQQNPELDIKVLV-DWHRAQRGLIG---AAASNTNADWYCEMAQEYPGVDIPVYGV-PVN---- 129 (451)
T ss_pred -------HHHHHHHHHHhcCCCcEEEEEE-Ecccccccccc---cCCCCcCHHHHHHHHHhCCCceEEEcCC-ccc----
Confidence 89999998854 799999998 984221 1100 010 1124566777764 599887742 210
Q ss_pred cccccccccccccceEEEcCCCCCCCCCcceeEEEEccccCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCC
Q 003523 317 RGYQTSSIFTHHQKTVVVDSEVPGGGTQKRRVVSFVGGIDLCDGRYDTQEHSLFRTLKTIHRDDFHQPNFPGSSIEKGGP 396 (813)
Q Consensus 317 ~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~nl~~~r~Dt~~H~~~~~l~~~~~~d~~~~~~~~~~~~~~~~ 396 (813)
....++++|+|++|||++ ++|+| .||.+.|... + ..
T Consensus 130 ---~~e~~gr~HrKi~IiD~~-----------v~ysG-aNi~d~Yl~~--~---------------------------~~ 165 (451)
T PRK09428 130 ---TREALGVLHLKGFIIDDT-----------VLYSG-ASLNNVYLHQ--H---------------------------DK 165 (451)
T ss_pred ---cchhhhhceeeEEEECCC-----------EEEec-ccccHHHhcC--C---------------------------cc
Confidence 112467899999999999 99997 7999975421 0 01
Q ss_pred CCCccccceeeeChHHHHHHHHHHHHHhhccCCCCCCCCcCcccccCCCCCc-----------------Cc-CCCCceee
Q 003523 397 REPWHDIHCKLEGPVAWDVLYNFEQRWTKQADKKDLFPPESLHQNLIHPLLD-----------------TS-KDLESWNV 458 (813)
Q Consensus 397 r~pWhD~~~~i~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~p~~~~-----------------~~-~~~~~~~v 458 (813)
...|.+++|+||+++++...|.+.|..+++........ ..|.... .. ...+.-.+
T Consensus 166 --~r~Dry~~i~g~~la~~~~~fi~~~~~~~~~v~~l~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 238 (451)
T PRK09428 166 --YRYDRYHLIRNAELADSMVNFIQQNLLNSPAVNRLDQP-----NRPKTKEIKNDIRQFRQRLRDAAYQFQGQANNDEL 238 (451)
T ss_pred --cCcceEEEEeCchHHHHHHHHHHHHhhccCcccccccc-----ccccchhhHHHHHHHHHHHhhhccCcccccCCCCe
Confidence 11366888999999999999999997654321000000 0000000 00 00000011
Q ss_pred EEeeccccCcccCCCCChHHHhhhccccCCCCcchhHHHHHHHHHHHhccceEEEeeccccccccCccccccccchhhhh
Q 003523 459 QIFRSIDGTAAADFPTDPFEAARVGLITGKDNVFDRSIQDAYINAIRRAKNFIYIENQYFIGSSYGWLSKDIRVEDINAL 538 (813)
Q Consensus 459 Qv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~~~~~~~~~~~~~~~ 538 (813)
++... .+.+. ...+.+.+.++|.+|++.|+|.||||+++
T Consensus 239 ~v~p~----------------------~g~g~--~~~l~~~~~~li~~A~~~i~I~TPYF~p~----------------- 277 (451)
T PRK09428 239 SVTPL----------------------VGLGK--KNLLNKTIFHLMASAEQKLTICTPYFNLP----------------- 277 (451)
T ss_pred EEeee----------------------eccCC--chHHHHHHHHHHhccCcEEEEEeCCcCCC-----------------
Confidence 11111 11111 25778999999999999999999999953
Q ss_pred ccchHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHH----HH---HHHHHHcC---CCCC
Q 003523 539 QLIPKELSLKIVSKIEAGEDFRVYIVIPMWPEGVPESASVQAILGWQRRTIEMMYA----DV---AQAIQKKG---LDDA 608 (813)
Q Consensus 539 n~i~~~~a~~i~~a~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~~t~~~~~~----~i---~~~L~~~g---v~~~ 608 (813)
..+..+|..++++| ++|.||+|.....+--.+..+.++.+....+ .|. .. .+.|.++| +.++
T Consensus 278 ----~~l~~~L~~a~~rG--v~V~Ii~~~~~andfy~~~d~~~~~~~~~py--~ye~~lr~f~~~~~~li~~G~l~v~i~ 349 (451)
T PRK09428 278 ----AILVRNIIRLLRRG--KKVEIIVGDKTANDFYIPPDEPFKIIGALPY--LYEINLRRFAKRLQYYIDNGQLNVRLW 349 (451)
T ss_pred ----HHHHHHHHHHHhcC--CcEEEEcCCcccccCcCCCccHHHHhhhhHH--HHHHhhhhhHHHhhhhhhcCcceEEEE
Confidence 25677888888999 8999999974211100112233333433322 111 11 22344555 4332
Q ss_pred CCCCceEEeecCCccccccCCCCCCCCCCchHHHHHhhccceEEEeeeEEEEeceEEEEcccccCcccccCCCCcceEEe
Q 003523 609 YPRDYLTFFCLGNRENIEEYNPEQSSESNSDYYKAQKARRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGARDTEIAMG 688 (813)
Q Consensus 609 ~~~~yl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHsK~mIVDD~~~~iGSaNin~RS~~~~~DsEi~v~ 688 (813)
+|.+ ..+|+|.|+|||+|++|||+|+|.||+. .|+|+++.
T Consensus 350 ------------------~~~~--------------------~~~HaK~i~vD~~~~~iGS~Nld~RS~~--ln~E~~l~ 389 (451)
T PRK09428 350 ------------------KDGD--------------------NSYHLKGIWVDDRWMLLTGNNLNPRAWR--LDLENALL 389 (451)
T ss_pred ------------------ecCC--------------------CcceEEEEEEeCCEEEEcCCCCChhHhh--hcccceEE
Confidence 2322 2799999999999999999999999996 66999999
Q ss_pred eecCC
Q 003523 689 AFQPR 693 (813)
Q Consensus 689 i~~~~ 693 (813)
+++|.
T Consensus 390 i~d~~ 394 (451)
T PRK09428 390 IHDPK 394 (451)
T ss_pred EECCh
Confidence 99985
No 12
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=100.00 E-value=6.9e-33 Score=308.25 Aligned_cols=331 Identities=16% Similarity=0.198 Sum_probs=213.2
Q ss_pred hhHHHHHHHHHhcccEEEEEEeccCCceeEecCCCCCCCCCCchhhhhhHHHHHHHHHHHHHcCCeEEEEEecCCCCccc
Q 003523 199 RCWEDIFDAIASAEHFIYMTGWSMYAPITLLRDPRRIKPKGNITAEEMLKTTLGDLLKKKADEGVKVLLLIWDDRTSVDI 278 (813)
Q Consensus 199 ~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~g~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~ 278 (813)
..|++++++|++||++|+|++|++. ++++.. | . +|.++|++||+|||+||||+ |..++
T Consensus 31 ~~~~~l~~~I~~Ak~~I~i~~yi~~-----~~~d~~---g--~--------~i~~aL~~aa~rGV~Vril~-D~~~~--- 88 (369)
T PHA03003 31 STYECFDEIISQAKKYIYIASFCCN-----LRSTPE---G--R--------LILDKLKEAAESGVKVTILV-DEQSG--- 88 (369)
T ss_pred CHHHHHHHHHHhhhhEEEEEEEEec-----ccCCch---H--H--------HHHHHHHHhccCCCeEEEEe-cCCCC---
Confidence 5799999999999999999988621 233433 3 3 89999999999999999997 97532
Q ss_pred ccccCcCCCCcHHHHHHHhcCCCEEEEcCCCCCccccccccccccccccccceEEEcCCCCCCCCCcceeEEEEccccCC
Q 003523 279 LKEDGLMGTHDEETADYFRKTKVRCVLCPRTSEIFTNIRGYQTSSIFTHHQKTVVVDSEVPGGGTQKRRVVSFVGGIDLC 358 (813)
Q Consensus 279 ~~~~g~~~t~~~~~~~~l~~~gV~~~~~~~~p~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~nl~ 358 (813)
....+.|+++||++..++... ....+.+|.|++|||++ +||+||+||+
T Consensus 89 -----------~~~~~~L~~~Gv~v~~~~~~~----------~~~~~~~~~k~~IiDg~-----------~~y~Gg~Ni~ 136 (369)
T PHA03003 89 -----------DKDEEELQSSNINYIKVDIGK----------LNNVGVLLGSFWVSDDR-----------RCYIGNASLT 136 (369)
T ss_pred -----------CccHHHHHHcCCEEEEEeccc----------cCCCCceeeeEEEEcCc-----------EEEEecCccC
Confidence 134578899999987654211 00012458899999999 9999999999
Q ss_pred CccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCccccceeeeChHHHHHHHHHHHHHhhccCCCCCCCCcCc
Q 003523 359 DGRYDTQEHSLFRTLKTIHRDDFHQPNFPGSSIEKGGPREPWHDIHCKLEGPVAWDVLYNFEQRWTKQADKKDLFPPESL 438 (813)
Q Consensus 359 ~~r~Dt~~H~~~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhD~~~~i~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~ 438 (813)
+++.. ..| ..+.|+|. ||+|.+|+..|.+.|..++++....... .
T Consensus 137 ~~~~~-~~~----------------------------~~g~~~d~-----g~~v~~l~~~F~~~w~~~~~~~~~~~~~-~ 181 (369)
T PHA03003 137 GGSIS-TIK----------------------------TLGVYSTY-----PPLATDLRRRFDTFKAFNKNKSVFNRLC-C 181 (369)
T ss_pred CcccC-ccc----------------------------cceeEecC-----cHHHHHHHHHHHHHHHhcCCCCcccccc-c
Confidence 96442 111 12479883 9999999999999999776542210000 0
Q ss_pred ccccCCCCCcCcCCCCceeeEEeeccccCcccCCCCChHHHhhhccccCCCCcchhHHHHHHHHHHHhccceEEEeeccc
Q 003523 439 HQNLIHPLLDTSKDLESWNVQIFRSIDGTAAADFPTDPFEAARVGLITGKDNVFDRSIQDAYINAIRRAKNFIYIENQYF 518 (813)
Q Consensus 439 ~~~~~p~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~sI~~ayl~aI~~Ak~~IyIEnqYF 518 (813)
.+ ..|...... .......+++.|. |... +. .....++++|+++|.+||++|+|+++||
T Consensus 182 ~~-~~~~~~~~~-~~~~~~~~~~~s~-----------P~~~------~~---~~~~~~~~~ll~~I~~Ak~~I~I~t~yf 239 (369)
T PHA03003 182 AC-CLPVSTKYH-INNPIGGVFFSDS-----------PEHL------LG---YSRTLDADVVLHKIKSAKKSIDLELLSL 239 (369)
T ss_pred cc-CCccccccc-ccCCCcceEEecC-----------ChHH------cC---CCCCcCHHHHHHHHHHHhhEEEEEEecc
Confidence 00 001000000 0000011122111 1100 00 0122468999999999999999999999
Q ss_pred cccccCccccccccchhhhhccchHHHHHHHHHHH-HcCCCeEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 003523 519 IGSSYGWLSKDIRVEDINALQLIPKELSLKIVSKI-EAGEDFRVYIVIPMWPEGVPESASVQAILGWQRRTIEMMYADVA 597 (813)
Q Consensus 519 i~~~~~~~~~~~~~~~~~~~n~i~~~~a~~i~~a~-~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~~t~~~~~~~i~ 597 (813)
+|.... +. . -.....+..+|.+|+ +|| |+|+|++|.+....+ . . ...+
T Consensus 240 ~P~~~~--d~-----~----~~~~~~i~~AL~~AAa~RG--V~VRILv~~~~~~~~---~--------~-------~~~~ 288 (369)
T PHA03003 240 VPVIRE--DD-----K----TTYWPDIYNALIRAAINRG--VKVRLLVGSWKKNDV---Y--------S-------MASV 288 (369)
T ss_pred ccEEee--CC-----C----CccHHHHHHHHHHHHHcCC--CEEEEEEecCCcCCc---h--------h-------hhHH
Confidence 864211 10 0 001236778888774 899 999999997432111 0 0 1246
Q ss_pred HHHHHcCCCCCCCCCceEEeecCCccccccCCCCCCCCCCchHHHHHhhccceEEEeeeEEEEeceEEEEcccccCcccc
Q 003523 598 QAIQKKGLDDAYPRDYLTFFCLGNRENIEEYNPEQSSESNSDYYKAQKARRFMIYVHSKMMIVDDEYIIIGSANINQRSM 677 (813)
Q Consensus 598 ~~L~~~gv~~~~~~~yl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHsK~mIVDD~~~~iGSaNin~RS~ 677 (813)
+.|+++|+... -.+++| . ...|+|+|||||++++|||+||+.||+
T Consensus 289 ~~L~~~G~~~~---i~vri~-----------~---------------------~~~H~K~~VVD~~~a~iGS~N~d~~s~ 333 (369)
T PHA03003 289 KSLQALCVGND---LSVKVF-----------R---------------------IPNNTKLLIVDDEFAHITSANFDGTHY 333 (369)
T ss_pred HHHHHcCCCCC---ceEeee-----------c---------------------CCCCceEEEEcCCEEEEeccccCchhh
Confidence 77888886421 001121 1 027999999999999999999999999
Q ss_pred cCCCCcceEEeeecCCccCCCCchhhhHHHHHHHHHHH
Q 003523 678 DGARDTEIAMGAFQPRHLNTTEPARGQIYGFRIALWYE 715 (813)
Q Consensus 678 ~~~~DsEi~v~i~~~~~~~~~~~~~~~~~~lR~~Lw~e 715 (813)
..+ .|+++.++++. ...++.....+.|..
T Consensus 334 ~~~--~e~~~~~~~~~-------~a~~l~~~F~~dW~~ 362 (369)
T PHA03003 334 LHH--AFVSFNTIDKE-------LVKELSAIFERDWTS 362 (369)
T ss_pred ccC--CCeEEecCChh-------HHHHHHHHHHHHhCC
Confidence 755 89887766543 344566777777753
No 13
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.95 E-value=4.4e-27 Score=231.38 Aligned_cols=134 Identities=49% Similarity=0.708 Sum_probs=119.7
Q ss_pred CCcccceEEEEEEEEeecCCCCCCC------------CCc------------cCcccCCcEEEEEECCeeeeeeeeccCC
Q 003523 2 APRLLHGILIVRIYGIDKLHTGCGF------------GSC------------EQIVGTALYATVDLDKARMARTRMITER 57 (813)
Q Consensus 2 ~~~ll~G~L~V~IieA~~L~~~~~~------------~~~------------~~~~~sDPYv~v~l~~~~~~rT~vi~~~ 57 (813)
|.+||||+|+|+|+||++|++++.+ ... ...+++||||+|++++.+++||+++++
T Consensus 1 ~~~llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~- 79 (158)
T cd04015 1 AAVLLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIEN- 79 (158)
T ss_pred CceEEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCC-
Confidence 4679999999999999999987521 000 123348999999999988899999998
Q ss_pred CCCCeeeeEEEEEecCCcceEEEEEEeCCCCCceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEEEEEee
Q 003523 58 TSRPHWNQSFRIYCAHRVSHVVFTIKNDNPVGAILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQFV 136 (813)
Q Consensus 58 t~nP~WNE~F~~~v~~~~~~l~~~V~D~d~~g~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f~ 136 (813)
+.||+|||+|.|++++..+.|+|+|+|+|.+++++||++.||++++..|...+.|++|.+.+++++++.++|||+++|+
T Consensus 80 ~~nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 80 SENPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred CCCCccceEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 8999999999999998888999999999999999999999999999999999999999999999998999999999995
No 14
>PF12357 PLD_C: Phospholipase D C terminal ; InterPro: IPR024632 Phospholipase D (PLD) catalyses the hydrolysis of the phosphodiester bond of glycerophospholipids to generate phosphatidic acid and a free head group. Phospholipase D activities have been detected in simple to complex organisms from viruses and bacteria to yeast, plants, and mammals []. In higher organisms, PLD specifically catalyzes the hydrolysis of phosphatidylcholine (PC) to phosphatidic acid (PA) and choline and is activated in response to stimulators of vesicle transport, endocytosis, exocytosis, cell migration, and mitosis. This entry represents the C-terminal domain of eukaryotic phospholipase D. The domain is approximately 70 amino acids in length and contains a conserved FPD sequence motif.
Probab=99.92 E-value=2e-25 Score=184.08 Aligned_cols=73 Identities=53% Similarity=0.990 Sum_probs=71.1
Q ss_pred cccCCCCCChHHHHHHHHHHHHHHHHhhcCCCCCCCCcceeecccccCCCCccccCCCCCCCCCCCCcccCcCC
Q 003523 721 KTSFNNPESSECVRLVNHIADQHWQMYTAKQPIRDLPGFLLRYPIEVTRDGVVKNLEGTEFFPDTQAPVFGTKS 794 (813)
Q Consensus 721 ~~~~~~p~~~~~~~~~~~~a~~n~~~~~~~~~~~~~~g~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (813)
++.|.+|+|+||+++||++|++||++|+++++ ++|+|||++||+.|++||+|++|||+++||||+|+|+|++|
T Consensus 2 e~~F~~PesleCVr~Vn~iae~nW~~y~~ee~-~dl~GHLl~YPv~V~~dG~V~~LpG~e~FPDt~~~VlG~~S 74 (74)
T PF12357_consen 2 EECFLEPESLECVRRVNEIAEENWKQYASEEV-TDLPGHLLKYPVQVDRDGKVTPLPGCEFFPDTGGKVLGSKS 74 (74)
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHhhcccc-ccCCCccccCCeEEcCCCCEeeCCCCCcCCCCCCcccCCCC
Confidence 67899999999999999999999999999999 99999999999999999999999999999999999999975
No 15
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.92 E-value=3.3e-24 Score=200.99 Aligned_cols=119 Identities=12% Similarity=0.230 Sum_probs=105.3
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCcceEEEEEEeCC
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRVSHVVFTIKNDN 86 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~~V~D~d 86 (813)
.|+|+|+|++|++|++. +.+++||||+|.++++++ ||+++.+++.||+|||+|+|++++....|.|+|+|+|
T Consensus 1 ~g~L~v~v~~Ak~l~~~-------~~g~sDPYv~i~lg~~~~-kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d 72 (121)
T cd04016 1 VGRLSITVVQAKLVKNY-------GLTRMDPYCRIRVGHAVY-ETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDER 72 (121)
T ss_pred CcEEEEEEEEccCCCcC-------CCCCCCceEEEEECCEEE-EeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCC
Confidence 48999999999998753 334599999999999876 9999987689999999999999887788999999999
Q ss_pred CCC-ceeEEEEEEecc-cccCCceeeeEEEccCCCCCcCCCCCeEEEEEEe
Q 003523 87 PVG-AILIGRAYVPVE-DVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQF 135 (813)
Q Consensus 87 ~~g-~~~IG~~~ipl~-~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f 135 (813)
.++ |++||.+.||+. .+..|+..+.|++|.+.++++ ..|+|||+|+|
T Consensus 73 ~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~--~~g~i~l~l~y 121 (121)
T cd04016 73 AFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGED--KEGMINLVFSY 121 (121)
T ss_pred CCcCCceEEEEEEECchhccCCCCccccEeCcCccCCC--CceEEEEEEeC
Confidence 998 689999999996 688898899999998877664 57999999987
No 16
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.90 E-value=3.1e-23 Score=199.64 Aligned_cols=125 Identities=18% Similarity=0.248 Sum_probs=111.7
Q ss_pred cceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCcceEEEEEE-e
Q 003523 6 LHGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRVSHVVFTIK-N 84 (813)
Q Consensus 6 l~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~~V~-D 84 (813)
+...|.|.|+|||+||++ .||||+|+|++++++||+++.+ +.||+|||+|+|++++.++.|+|+|+ +
T Consensus 9 ~~~sL~v~V~EAk~Lp~~-----------~~~Y~~i~Ld~~~vaRT~v~~~-~~nP~W~E~F~f~~~~~~~~l~v~v~k~ 76 (146)
T cd04013 9 TENSLKLWIIEAKGLPPK-----------KRYYCELCLDKTLYARTTSKLK-TDTLFWGEHFEFSNLPPVSVITVNLYRE 76 (146)
T ss_pred EEEEEEEEEEEccCCCCc-----------CCceEEEEECCEEEEEEEEEcC-CCCCcceeeEEecCCCcccEEEEEEEEc
Confidence 456899999999999975 4899999999999999999999 99999999999999999999999995 4
Q ss_pred CCCC----CceeEEEEEEecccccCCceeeeEEEccCCCCCc-------CCCCCeEEEEEEeeecccCc
Q 003523 85 DNPV----GAILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKN-------IPGGSKIHVMLQFVHVVNDN 142 (813)
Q Consensus 85 ~d~~----g~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~-------~~~~g~l~l~l~f~~~~~~~ 142 (813)
.+.. ++++||++.||++++..|..++.||||++.++++ ++..++|||+++|.++...|
T Consensus 77 ~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~~lP 145 (146)
T cd04013 77 SDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTRVLP 145 (146)
T ss_pred cCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEeeeCC
Confidence 4444 4689999999999999999999999999988887 66789999999999976543
No 17
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.88 E-value=7.6e-22 Score=186.21 Aligned_cols=115 Identities=17% Similarity=0.318 Sum_probs=101.9
Q ss_pred EEEEEEEEeec---CCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCcceEEEEEEeC
Q 003523 9 ILIVRIYGIDK---LHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRVSHVVFTIKND 85 (813)
Q Consensus 9 ~L~V~IieA~~---L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~~V~D~ 85 (813)
.|+|+|++|++ |+.+ +..+++||||+|++++++. ||+++++ ++||+|||+|.|++.+....|+|+|+|+
T Consensus 1 ~L~v~v~~A~~~~~l~~~------d~~g~sDPYv~i~~g~~~~-rTk~~~~-~~nP~WnE~f~f~v~~~~~~l~v~V~d~ 72 (126)
T cd08379 1 ILEVGILGAQGLDVLRAK------DGRGSTDAYCVAKYGPKWV-RTRTVED-SSNPRWNEQYTWPVYDPCTVLTVGVFDN 72 (126)
T ss_pred CeEEEEEEeECCcccccc------ccCCCCCeeEEEEECCEEe-EcCcccC-CCCCcceeEEEEEecCCCCEEEEEEEEC
Confidence 38999999999 6543 2344599999999998865 9999999 9999999999999988888999999999
Q ss_pred CCC-------CceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEE
Q 003523 86 NPV-------GAILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHV 131 (813)
Q Consensus 86 d~~-------g~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l 131 (813)
+.+ ++++||++.|+++.+..+...+.||+|.+.++++.+..|+|++
T Consensus 73 d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 73 SQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 987 6899999999999999999999999999877777778899875
No 18
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.85 E-value=5.5e-21 Score=181.13 Aligned_cols=117 Identities=19% Similarity=0.291 Sum_probs=99.9
Q ss_pred EEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecC------CcceEEEEEE
Q 003523 10 LIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAH------RVSHVVFTIK 83 (813)
Q Consensus 10 L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~------~~~~l~~~V~ 83 (813)
++|+|++|+||+++ +..+++||||+|++++++. ||+++++ ++||+|||+|.|.+.. ....|+|+|+
T Consensus 1 ~~V~V~~A~~L~~~------d~~g~~dpYv~v~l~~~~~-kT~v~~~-t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~ 72 (126)
T cd08682 1 VQVTVLQARGLLCK------GKSGTNDAYVIIQLGKEKY-STSVKEK-TTSPVWKEECSFELPGLLSGNGNRATLQLTVM 72 (126)
T ss_pred CEEEEEECcCCcCC------CCCcCCCceEEEEECCeee-eeeeecC-CCCCEeCceEEEEecCcccCCCcCCEEEEEEE
Confidence 58999999999875 2234489999999988764 9999999 9999999999999876 3578999999
Q ss_pred eCCCCC-ceeEEEEEEeccccc--CCceeeeEEEccCCCCCcCCCCCeEEEEEE
Q 003523 84 NDNPVG-AILIGRAYVPVEDVA--KEFVIDRSFDIRDEEYKNIPGGSKIHVMLQ 134 (813)
Q Consensus 84 D~d~~g-~~~IG~~~ipl~~l~--~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~ 134 (813)
|++.++ +++||++.|+++++. .+...+.||+|.+..+++.+..|+|+|+++
T Consensus 73 d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 73 HRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred EccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 999987 789999999999988 577788999998766655557899999875
No 19
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.85 E-value=1.6e-20 Score=177.94 Aligned_cols=120 Identities=14% Similarity=0.206 Sum_probs=102.8
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCc-ceEEEEEEeC
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRV-SHVVFTIKND 85 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~-~~l~~~V~D~ 85 (813)
+..|+|+|++|++|+++ .++||||+|++++.+++||++ ++ +.||+|||+|.|++.... ..++|.|+|+
T Consensus 3 ~~~L~V~Vi~A~~L~~~---------~~~DPYv~v~l~~~~~~kT~v-~~-~~nP~WnE~f~f~~~~~~~~~l~v~v~d~ 71 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---------HVPHPYCVISLNEVKVARTKV-RE-GPNPVWSEEFVFDDLPPDVNSFTISLSNK 71 (126)
T ss_pred eeEEEEEEEEeeCCCCC---------CCCCeeEEEEECCEeEEEeec-CC-CCCCccCCEEEEecCCCCcCEEEEEEEEC
Confidence 46799999999999863 248999999999887789997 45 899999999999975443 6799999999
Q ss_pred CCCC-ceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEEEEEeee
Q 003523 86 NPVG-AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQFVH 137 (813)
Q Consensus 86 d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f~~ 137 (813)
+.++ +++||.+.||+.++..|...+.|++|....+++.+..|+|+|+++|.+
T Consensus 72 ~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 72 AKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 9886 789999999999999999899999998765433456799999999986
No 20
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.85 E-value=2e-20 Score=176.04 Aligned_cols=119 Identities=10% Similarity=0.154 Sum_probs=105.4
Q ss_pred EEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCcceEEEEEEeCCCCC
Q 003523 10 LIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRVSHVVFTIKNDNPVG 89 (813)
Q Consensus 10 L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~~V~D~d~~g 89 (813)
|+|+|++|++|+.++ ..+++||||+|.+++..+.||+++.+ +.||+|||+|.|.+.+..+.|.|+|+|+|.++
T Consensus 2 L~v~v~~a~~L~~~d------~~g~~Dpyv~v~~~~~~~~kT~~~~~-t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~ 74 (121)
T cd04042 2 LDIHLKEGRNLAARD------RGGTSDPYVKFKYGGKTVYKSKTIYK-NLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGL 74 (121)
T ss_pred eEEEEEEeeCCCCcC------CCCCCCCeEEEEECCEEEEEeeeccC-CCCCccceeEEEEecCCCCeEEEEEEeCCCCC
Confidence 899999999999752 23459999999999877789999998 99999999999999877789999999999985
Q ss_pred -ceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEEEEEeee
Q 003523 90 -AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQFVH 137 (813)
Q Consensus 90 -~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f~~ 137 (813)
+++||.+.+++.++..+...+.|++|.+..+. +..|+|+|.+.|.|
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~--~~~G~l~l~~~~~~ 121 (121)
T cd04042 75 TDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSD--EDLGYISLVVTLTP 121 (121)
T ss_pred CCcceEEEEEEHHHcCCCCCeEEEEECCCCCCc--cCceEEEEEEEECC
Confidence 78999999999999999889999999876542 36899999999986
No 21
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.83 E-value=3.5e-20 Score=174.42 Aligned_cols=119 Identities=22% Similarity=0.351 Sum_probs=100.9
Q ss_pred EEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCcceEEEEEEeCCCCC
Q 003523 10 LIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRVSHVVFTIKNDNPVG 89 (813)
Q Consensus 10 L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~~V~D~d~~g 89 (813)
|.|+|++|+||+++.. ....+||||+|+++++.++||+++++ |+||+|||+|.|.+.+....|.|.|+|++.++
T Consensus 2 l~v~v~~a~~L~~~~~-----~~g~sDpYv~v~l~~~~~~kT~v~~k-t~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~ 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSG-----PNKMRDCYCTVNLDQEEVFRTKTVEK-SLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLR 75 (121)
T ss_pred eEEEEEEccCCCCCCC-----CCCCcCcEEEEEECCccEEEeeEEEC-CCCCccCCeEEEEcCCCCCEEEEEEEECCCCC
Confidence 7899999999997410 12248999999999887889999999 99999999999999876689999999999986
Q ss_pred -ceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEEEEEe
Q 003523 90 -AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQF 135 (813)
Q Consensus 90 -~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f 135 (813)
+++||++.++++++..+...+.||+|.... ..-+..|+||++++|
T Consensus 76 ~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~-~~~~~~G~i~l~~~~ 121 (121)
T cd08401 76 RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVD-ADSEVQGKVHLELRL 121 (121)
T ss_pred CCceEEEEEEEHHHccCCCCcEeeEEEEccC-CCCcccEEEEEEEEC
Confidence 689999999999999888889999997532 111257999999875
No 22
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.83 E-value=6.3e-20 Score=178.93 Aligned_cols=122 Identities=21% Similarity=0.321 Sum_probs=102.9
Q ss_pred EEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCc-ceEEEEEEeCCC
Q 003523 9 ILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRV-SHVVFTIKNDNP 87 (813)
Q Consensus 9 ~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~-~~l~~~V~D~d~ 87 (813)
.|+|+|++|++|++++ ..+.+||||+|.++++. .||+++.+.|.||+|||+|.|.+.+.. +.|.|+|+|++.
T Consensus 1 ~L~V~Vi~A~~L~~~d------~~g~sDPYV~v~l~~~~-~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~ 73 (150)
T cd04019 1 YLRVTVIEAQDLVPSD------KNRVPEVFVKAQLGNQV-LRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVG 73 (150)
T ss_pred CEEEEEEEeECCCCCC------CCCCCCeEEEEEECCEE-eeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecC
Confidence 3899999999998752 23349999999999865 599999764699999999999997654 689999999998
Q ss_pred CC-ceeEEEEEEecccccCC----ceeeeEEEccCCCC-----CcCCCCCeEEEEEEeee
Q 003523 88 VG-AILIGRAYVPVEDVAKE----FVIDRSFDIRDEEY-----KNIPGGSKIHVMLQFVH 137 (813)
Q Consensus 88 ~g-~~~IG~~~ipl~~l~~g----~~~~~w~~L~~~~g-----k~~~~~g~l~l~l~f~~ 137 (813)
.+ +++||++.||++++..+ ...+.||+|.+..| ++.+..|+|+|++.|..
T Consensus 74 ~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 74 PNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred CCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 75 78999999999998753 45789999998765 55667899999999986
No 23
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.83 E-value=4.3e-20 Score=172.80 Aligned_cols=117 Identities=16% Similarity=0.254 Sum_probs=99.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCC-cceEEEEEEeCC
Q 003523 8 GILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHR-VSHVVFTIKNDN 86 (813)
Q Consensus 8 G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~-~~~l~~~V~D~d 86 (813)
|+|+|+|++|++|++++ ....+||||+|++++.+ .||+++.+++.||+|||+|.|.+.+. .+.|.|+|+|++
T Consensus 1 g~L~V~v~~A~~L~~~~------~~~~~dpyv~v~~~~~~-~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~ 73 (118)
T cd08681 1 GTLVVVVLKARNLPNKR------KLDKQDPYCVLRIGGVT-KKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDD 73 (118)
T ss_pred CEEEEEEEEccCCCCCC------cCCCCCceEEEEECCCc-cccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCC
Confidence 79999999999999752 22348999999999854 69999866589999999999999764 478999999999
Q ss_pred CCCceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEEEEEe
Q 003523 87 PVGAILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQF 135 (813)
Q Consensus 87 ~~g~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f 135 (813)
..++++||++.+++.++..+...+.|++|..+ ++ ..|+|+++++|
T Consensus 74 ~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~-~~---~~G~i~l~l~f 118 (118)
T cd08681 74 KRKPDLIGDTEVDLSPALKEGEFDDWYELTLK-GR---YAGEVYLELTF 118 (118)
T ss_pred CCCCcceEEEEEecHHHhhcCCCCCcEEeccC-Cc---EeeEEEEEEEC
Confidence 88888999999999999887778899999753 33 57999999987
No 24
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.81 E-value=4.5e-19 Score=169.42 Aligned_cols=123 Identities=19% Similarity=0.305 Sum_probs=102.1
Q ss_pred ccceEEEEEEEEeecCCCCCCCCC--c-c-CcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCcceEEE
Q 003523 5 LLHGILIVRIYGIDKLHTGCGFGS--C-E-QIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRVSHVVF 80 (813)
Q Consensus 5 ll~G~L~V~IieA~~L~~~~~~~~--~-~-~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~ 80 (813)
++.|.|+|+|++|++|++.+.... . + ....+||||+|++++++++||+++++ |.||+|||+|.|++. ....|.|
T Consensus 1 ~~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~-t~~P~Wne~f~~~v~-~~~~l~~ 78 (132)
T cd04014 1 MFTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPK-TNSPVWNEEFTTEVH-NGRNLEL 78 (132)
T ss_pred CcceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCC-CCCCCcceeEEEEcC-CCCEEEE
Confidence 467999999999999987521000 0 0 01348999999999988889999998 999999999999996 5578999
Q ss_pred EEEeCCCCC-ceeEEEEEEecccccC--CceeeeEEEccCCCCCcCCCCCeEEEEEEeee
Q 003523 81 TIKNDNPVG-AILIGRAYVPVEDVAK--EFVIDRSFDIRDEEYKNIPGGSKIHVMLQFVH 137 (813)
Q Consensus 81 ~V~D~d~~g-~~~IG~~~ipl~~l~~--g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f~~ 137 (813)
.|+|++.++ +++||++.|+++++.. +...+.|++|. +.|+|++++.|..
T Consensus 79 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 79 TVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred EEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 999998877 6899999999999997 56789999994 4689999998864
No 25
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.80 E-value=8.7e-19 Score=166.10 Aligned_cols=121 Identities=17% Similarity=0.341 Sum_probs=102.7
Q ss_pred EEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECC-eeeeeeeeccCCCCCCeeeeEEEEEecCCcceEEEEEEeCCCC
Q 003523 10 LIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDK-ARMARTRMITERTSRPHWNQSFRIYCAHRVSHVVFTIKNDNPV 88 (813)
Q Consensus 10 L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~-~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~~V~D~d~~ 88 (813)
|.|+|++|++|+. ..+++||||++++++ ....||+++++ +.||+|||+|.|.+......|.|+|+|++..
T Consensus 1 l~v~v~~A~~L~~--------~~g~~dpyv~v~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~ 71 (126)
T cd08678 1 LLVKNIKANGLSE--------AAGSSNPYCVLEMDEPPQKYQSSTQKN-TSNPFWDEHFLFELSPNSKELLFEVYDNGKK 71 (126)
T ss_pred CEEEEEEecCCCC--------CCCCcCCEEEEEECCCCcEEEeEEEec-CCCCccCceEEEEeCCCCCEEEEEEEECCCC
Confidence 6799999999984 123489999999975 33469999999 9999999999999976667899999999998
Q ss_pred C-ceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEEEEEeeecc
Q 003523 89 G-AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQFVHVV 139 (813)
Q Consensus 89 g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f~~~~ 139 (813)
+ +++||++.|++.++..+...+.|++|....++..+..|+|+++++|.+-+
T Consensus 72 ~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 72 SDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred CCCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 7 68999999999999988878899999865443335689999999998754
No 26
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.80 E-value=6.4e-19 Score=167.21 Aligned_cols=120 Identities=14% Similarity=0.203 Sum_probs=99.4
Q ss_pred EEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCc----ceEEEEEEe
Q 003523 9 ILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRV----SHVVFTIKN 84 (813)
Q Consensus 9 ~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~----~~l~~~V~D 84 (813)
.|.|+|++|++|++.+ ..+.+||||+|++++++. ||+++++ +.||+|||+|.|.+.+.. ..|+|+|+|
T Consensus 1 ~L~V~vi~A~~L~~~d------~~g~~dpyv~v~~~~~~~-rT~v~~~-t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d 72 (127)
T cd04022 1 KLVVEVVDAQDLMPKD------GQGSSSAYVELDFDGQKK-RTRTKPK-DLNPVWNEKLVFNVSDPSRLSNLVLEVYVYN 72 (127)
T ss_pred CeEEEEEEeeCCCCCC------CCCCcCcEEEEEECCEEe-cceeEcC-CCCCccceEEEEEccCHHHccCCeEEEEEee
Confidence 4899999999998752 223489999999998764 9999998 999999999999987543 479999999
Q ss_pred CCCC--CceeEEEEEEeccccc-CCceeeeEEEccCCCCCcCCCCCeEEEEEEeee
Q 003523 85 DNPV--GAILIGRAYVPVEDVA-KEFVIDRSFDIRDEEYKNIPGGSKIHVMLQFVH 137 (813)
Q Consensus 85 ~d~~--g~~~IG~~~ipl~~l~-~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f~~ 137 (813)
++.+ ++++||++.|+++++. .+.....||+|.... +.-+..|+|+|++.|+.
T Consensus 73 ~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~-~~~~~~G~l~l~~~~~~ 127 (127)
T cd04022 73 DRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRG-LFSRVRGEIGLKVYITD 127 (127)
T ss_pred CCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCC-CCCCccEEEEEEEEEcC
Confidence 9887 4789999999999998 577788999997643 21236799999999863
No 27
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.80 E-value=5.6e-19 Score=166.24 Aligned_cols=113 Identities=19% Similarity=0.268 Sum_probs=97.5
Q ss_pred EEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCC-cceEEEEEEeCCCC
Q 003523 10 LIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHR-VSHVVFTIKNDNPV 88 (813)
Q Consensus 10 L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~-~~~l~~~V~D~d~~ 88 (813)
|.|+|++|++|+.+ .+||||+|++++. .+||+++++ +.||+|||+|.|.+.+. ...|.|+|+|+|..
T Consensus 2 L~V~Vi~a~~L~~~----------~~Dpyv~v~l~~~-~~kT~v~~~-t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~ 69 (121)
T cd08378 2 LYVRVVKARGLPAN----------SNDPVVEVKLGNY-KGSTKAIER-TSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA 69 (121)
T ss_pred EEEEEEEecCCCcc----------cCCCEEEEEECCc-cccccccCC-CCCCccceEEEEEcCCCcCCEEEEEEEeCCCC
Confidence 89999999999852 5899999999875 469999999 99999999999998774 57899999999988
Q ss_pred CceeEEEEEEecccccCC-----ceeeeEEEccCCCCCcCCCCCeEEEEEEee
Q 003523 89 GAILIGRAYVPVEDVAKE-----FVIDRSFDIRDEEYKNIPGGSKIHVMLQFV 136 (813)
Q Consensus 89 g~~~IG~~~ipl~~l~~g-----~~~~~w~~L~~~~gk~~~~~g~l~l~l~f~ 136 (813)
++++||++.|+++++..+ ...+.||+|.+..+. +..|+|+|.++|-
T Consensus 70 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~--~~~G~i~l~~~~~ 120 (121)
T cd08378 70 KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGG--RVGGELMLAVWFG 120 (121)
T ss_pred cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCC--ccceEEEEEEEec
Confidence 889999999999998753 235789999876542 4679999999984
No 28
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.79 E-value=9.2e-19 Score=164.22 Aligned_cols=120 Identities=18% Similarity=0.323 Sum_probs=98.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecC-CcceEEEEEEeCC
Q 003523 8 GILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAH-RVSHVVFTIKNDN 86 (813)
Q Consensus 8 G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~-~~~~l~~~V~D~d 86 (813)
|.|+|+|++|++|++++....-.....+||||+|+++++ .+||+++++ +.||+|||+|.|.+.. ..+.|.|+|+|++
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~-~~kT~~~~~-t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~ 78 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQ-TFKSKVIKE-NLNPKWNEVYEAVVDEVPGQELEIELFDED 78 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCE-eEEccccCC-CCCCcccceEEEEeCCCCCCEEEEEEEecC
Confidence 789999999999997521100000124899999999884 579999999 9999999999999864 4579999999999
Q ss_pred CCCceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEEEEEe
Q 003523 87 PVGAILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQF 135 (813)
Q Consensus 87 ~~g~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f 135 (813)
..++++||.+.|+++++..+...+.||+|.+. ..|+|+++++|
T Consensus 79 ~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~~ 121 (121)
T cd08391 79 PDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLEW 121 (121)
T ss_pred CCCCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEeC
Confidence 88788999999999999987778999999652 46899999875
No 29
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.79 E-value=1.1e-18 Score=164.37 Aligned_cols=121 Identities=21% Similarity=0.193 Sum_probs=100.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECC-eeeeeeeeccCCCCCCeeeeEEEEEecCCcceEEEEEEeCC
Q 003523 8 GILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDK-ARMARTRMITERTSRPHWNQSFRIYCAHRVSHVVFTIKNDN 86 (813)
Q Consensus 8 G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~-~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~~V~D~d 86 (813)
|.|+|+|++|++|++... ....+||||+|.+++ ...+||+++++ +.||+|||+|.|.+.+..+.|.|+|+|.+
T Consensus 2 g~l~v~v~~a~~L~~~~~-----~~~~~dpyv~v~~~~~~~~~kT~~~~~-~~~P~Wne~~~~~v~~~~~~l~~~v~d~~ 75 (124)
T cd04044 2 GVLAVTIKSARGLKGSDI-----IGGTVDPYVTFSISNRRELARTKVKKD-TSNPVWNETKYILVNSLTEPLNLTVYDFN 75 (124)
T ss_pred eEEEEEEEcccCCCcccc-----cCCCCCCeEEEEECCCCcceEeeeecC-CCCCcceEEEEEEeCCCCCEEEEEEEecC
Confidence 899999999999985310 112389999999998 57789999998 99999999999999866789999999999
Q ss_pred CCC-ceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEEEEEeee
Q 003523 87 PVG-AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQFVH 137 (813)
Q Consensus 87 ~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f~~ 137 (813)
..+ +++||.+.+++.++..+...+.|...+..+++ ..|+|+++++|.|
T Consensus 76 ~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k---~~G~i~~~l~~~p 124 (124)
T cd04044 76 DKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGK---PVGELNYDLRFFP 124 (124)
T ss_pred CCCCCceeEEEEEEHHHhccCccccCcchhhhcCCc---cceEEEEEEEeCC
Confidence 876 68999999999999987766544333345555 5699999999986
No 30
>PRK05443 polyphosphate kinase; Provisional
Probab=99.78 E-value=1.4e-17 Score=196.32 Aligned_cols=270 Identities=16% Similarity=0.183 Sum_probs=187.3
Q ss_pred chhhHHHHHHHHHhccc-----EEEEEEeccCCceeEecCCCCCCCCCCchhhhhhHHHHHHHHHHHHHcCCeEEEEEec
Q 003523 197 SHRCWEDIFDAIASAEH-----FIYMTGWSMYAPITLLRDPRRIKPKGNITAEEMLKTTLGDLLKKKADEGVKVLLLIWD 271 (813)
Q Consensus 197 ~~~~~~~l~~aI~~Ak~-----~I~I~~w~~~~~~~L~r~~~~~~~g~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD 271 (813)
|-+.|+.+++.|++|.+ +|.++-|.+.. +. .+.++|+.||++||+|+||| +
T Consensus 346 PY~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~---------------~s--------~iv~aL~~Aa~~Gk~V~vlv-e 401 (691)
T PRK05443 346 PYESFDPVVEFLRQAAADPDVLAIKQTLYRTSK---------------DS--------PIVDALIEAAENGKQVTVLV-E 401 (691)
T ss_pred CccCchHHHHHHHHhccCCCeeEEEEEEEEecC---------------CH--------HHHHHHHHHHHcCCEEEEEE-c
Confidence 44567889999999998 89999876531 12 89999999999999999998 7
Q ss_pred CCCCcccccccCcCCCCcHHHHHHHhcCCCEEEEcCCCCCccccccccccccccccccceEEEcCCCCCCCCCcceeEEE
Q 003523 272 DRTSVDILKEDGLMGTHDEETADYFRKTKVRCVLCPRTSEIFTNIRGYQTSSIFTHHQKTVVVDSEVPGGGTQKRRVVSF 351 (813)
Q Consensus 272 ~~~s~~~~~~~g~~~t~~~~~~~~l~~~gV~~~~~~~~p~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~~vaf 351 (813)
... .+- ...+..+.+.|+++||++..-- + .+..|.|+++||++.. ++-+-.++
T Consensus 402 ~ka--rfd------e~~n~~~~~~L~~aGv~V~y~~--~-------------~~k~HaK~~lid~~e~----~~~~~~~~ 454 (691)
T PRK05443 402 LKA--RFD------EEANIRWARRLEEAGVHVVYGV--V-------------GLKTHAKLALVVRREG----GGLRRYVH 454 (691)
T ss_pred cCc--ccc------HHHHHHHHHHHHHcCCEEEEcc--C-------------CccceeEEEEEEeecC----CceeEEEE
Confidence 543 111 1112467788999999985421 1 2468999999999732 23444899
Q ss_pred EccccCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCccccceeee-ChHHHHHHHHHHHHHhhccCCC
Q 003523 352 VGGIDLCDGRYDTQEHSLFRTLKTIHRDDFHQPNFPGSSIEKGGPREPWHDIHCKLE-GPVAWDVLYNFEQRWTKQADKK 430 (813)
Q Consensus 352 vGG~nl~~~r~Dt~~H~~~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhD~~~~i~-Gpaa~dl~~~F~~rW~~~~~~~ 430 (813)
||+.|+.... ...|.|+.+... +..+.++...|...|......
T Consensus 455 iGTgN~n~~s-----------------------------------~~~y~D~~l~t~d~~i~~d~~~~F~~l~~~~~~~- 498 (691)
T PRK05443 455 LGTGNYNPKT-----------------------------------ARLYTDLSLLTADPEIGEDVTRLFNYLTGYSRPV- 498 (691)
T ss_pred EcCCCCCcch-----------------------------------hhhccceeEEEeChHHHHHHHHHHHHHhCcCccc-
Confidence 9999987641 135789998854 568999999999987542111
Q ss_pred CCCCCcCcccccCCCCCcCcCCCCceeeEEeeccccCcccCCCCChHHHhhhccccCCCCcchhHHHHHHHHHHHhccc-
Q 003523 431 DLFPPESLHQNLIHPLLDTSKDLESWNVQIFRSIDGTAAADFPTDPFEAARVGLITGKDNVFDRSIQDAYINAIRRAKN- 509 (813)
Q Consensus 431 ~~~~~~~~~~~~~p~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~sI~~ayl~aI~~Ak~- 509 (813)
.+. .++ .+ +......+.+.+...|.+||+
T Consensus 499 ------~~~-------------------~l~------------------------~s-P~~~~~~l~~~i~~ei~~Ak~G 528 (691)
T PRK05443 499 ------KLR-------------------KLL------------------------VS-PFTLRERLLELIDREIANARAG 528 (691)
T ss_pred ------ccc-------------------EEe------------------------ec-CccHHHHHHHHHHHHHHHHhcC
Confidence 000 000 00 112256788999999999999
Q ss_pred ---eEEEeeccccccccCccccccccchhhhhccchHHHHHHHHHHHHcCCCeEEEEEe-------cCCCCCCCCchhHH
Q 003523 510 ---FIYIENQYFIGSSYGWLSKDIRVEDINALQLIPKELSLKIVSKIEAGEDFRVYIVI-------PMWPEGVPESASVQ 579 (813)
Q Consensus 510 ---~IyIEnqYFi~~~~~~~~~~~~~~~~~~~n~i~~~~a~~i~~a~~~g~~v~V~Ivl-------P~~p~g~~~~~~~~ 579 (813)
+|+|.++|+. + ..+..+|..|.++| |+|.|++ |..|+ .++...+
T Consensus 529 ~~a~I~ik~n~l~-------d---------------~~ii~aL~~As~~G--V~V~liVRGiC~l~pgipg-~sd~i~v- 582 (691)
T PRK05443 529 KPARIIAKMNSLV-------D---------------PQIIDALYEASQAG--VKIDLIVRGICCLRPGVPG-LSENIRV- 582 (691)
T ss_pred CCCEEEEEcCCCC-------C---------------HHHHHHHHHHHHCC--CeEEEEEecccccCCCCCC-CCCCEEE-
Confidence 9999999964 2 25778999999999 7888887 32221 2222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCceEEeecCCccccccCCCCCCCCCCchHHHHHhhccceEEEeeeEEE
Q 003523 580 AILGWQRRTIEMMYADVAQAIQKKGLDDAYPRDYLTFFCLGNRENIEEYNPEQSSESNSDYYKAQKARRFMIYVHSKMMI 659 (813)
Q Consensus 580 ~i~~~~~~t~~~~~~~i~~~L~~~gv~~~~~~~yl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHsK~mI 659 (813)
+ +++..+.+ +++++ .|.+ .
T Consensus 583 -------~-------s~v~r~Le-h~rIy------------------~f~~------------------------g---- 601 (691)
T PRK05443 583 -------R-------SIVGRFLE-HSRIY------------------YFGN------------------------G---- 601 (691)
T ss_pred -------H-------HHHHHHHh-cCEEE------------------EEeC------------------------C----
Confidence 1 23444544 23432 1111 1
Q ss_pred EeceEEEEcccccCcccccCCCCcceEEeeecCC
Q 003523 660 VDDEYIIIGSANINQRSMDGARDTEIAMGAFQPR 693 (813)
Q Consensus 660 VDD~~~~iGSaNin~RS~~~~~DsEi~v~i~~~~ 693 (813)
||.+++||||||+.||+. ++.|+++.++|+.
T Consensus 602 -d~~~~~iGSAn~d~Rsl~--~r~Ev~~~i~d~~ 632 (691)
T PRK05443 602 -GDEEVYISSADWMPRNLD--RRVEVLFPILDPR 632 (691)
T ss_pred -CCcEEEEECCCCCccccc--ceEEEeEEEeCHH
Confidence 889999999999999997 4599999999875
No 31
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.78 E-value=2.2e-18 Score=161.61 Aligned_cols=113 Identities=19% Similarity=0.322 Sum_probs=95.6
Q ss_pred EEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECC--eeeeeeeeccCCCCCCeeeeEEEEEecCCc-ceEEEEEEeCC
Q 003523 10 LIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDK--ARMARTRMITERTSRPHWNQSFRIYCAHRV-SHVVFTIKNDN 86 (813)
Q Consensus 10 L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~--~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~-~~l~~~V~D~d 86 (813)
|.|+|++|++|++.+ ....+||||+|.+.+ ....||+++++ +.||+|||+|.|.+.... ..|.|+|+|+|
T Consensus 2 L~V~vi~a~~L~~~~------~~~~~Dpyv~v~~~~~~~~~~kT~vv~~-t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d 74 (119)
T cd04036 2 LTVRVLRATNITKGD------LLSTPDCYVELWLPTASDEKKRTKTIKN-SINPVWNETFEFRIQSQVKNVLELTVMDED 74 (119)
T ss_pred eEEEEEEeeCCCccC------CCCCCCcEEEEEEcCCCCccCccceecC-CCCCccceEEEEEeCcccCCEEEEEEEECC
Confidence 799999999999752 223489999999964 34569999999 999999999999987543 56999999999
Q ss_pred CCCceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEEEEEe
Q 003523 87 PVGAILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQF 135 (813)
Q Consensus 87 ~~g~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f 135 (813)
.+++++||++.+++.++..|...+.|++|.. ++.|+|++++.+
T Consensus 75 ~~~~~~iG~~~~~l~~l~~g~~~~~~~~L~~------~~~g~l~~~~~~ 117 (119)
T cd04036 75 YVMDDHLGTVLFDVSKLKLGEKVRVTFSLNP------QGKEELEVEFLL 117 (119)
T ss_pred CCCCcccEEEEEEHHHCCCCCcEEEEEECCC------CCCceEEEEEEe
Confidence 8878899999999999999999999999964 146888888765
No 32
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.78 E-value=3.3e-18 Score=159.50 Aligned_cols=113 Identities=12% Similarity=0.252 Sum_probs=97.7
Q ss_pred EEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCC-cceEEEEEEeCCC
Q 003523 9 ILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHR-VSHVVFTIKNDNP 87 (813)
Q Consensus 9 ~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~-~~~l~~~V~D~d~ 87 (813)
.|+|+|++|++|++++ ....+||||+|++++++ .||+++++ |.||+|||+|.|.+.+. ...|.|+|+|++.
T Consensus 1 ~~~V~v~~a~~L~~~~------~~~~~dPyv~v~~~~~~-~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~ 72 (116)
T cd08376 1 VVTIVLVEGKNLPPMD------DNGLSDPYVKFRLGNEK-YKSKVCSK-TLNPQWLEQFDLHLFDDQSQILEIEVWDKDT 72 (116)
T ss_pred CEEEEEEEEECCCCCC------CCCCCCcEEEEEECCEe-EecccccC-CCCCceeEEEEEEecCCCCCEEEEEEEECCC
Confidence 3799999999999752 12348999999998765 59999999 99999999999998765 5789999999998
Q ss_pred CC-ceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEEEEEee
Q 003523 88 VG-AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQFV 136 (813)
Q Consensus 88 ~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f~ 136 (813)
++ +++||++.++++++..+...+.|++|.+ ..|+|++.+.|+
T Consensus 73 ~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~-------~~G~~~~~~~~~ 115 (116)
T cd08376 73 GKKDEFIGRCEIDLSALPREQTHSLELELED-------GEGSLLLLLTLT 115 (116)
T ss_pred CCCCCeEEEEEEeHHHCCCCCceEEEEEccC-------CCcEEEEEEEec
Confidence 86 7899999999999999888999999964 258999998875
No 33
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.78 E-value=3.1e-18 Score=160.34 Aligned_cols=118 Identities=16% Similarity=0.302 Sum_probs=100.2
Q ss_pred eEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCcceEEEEEEeCCC
Q 003523 8 GILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRVSHVVFTIKNDNP 87 (813)
Q Consensus 8 G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~~V~D~d~ 87 (813)
|.|+|+|++|++|+++. ....+||||+|++++.. +||+++++ +.||+|||+|.|++.+....|.|+|+|++.
T Consensus 1 g~l~v~v~~a~~L~~~~------~~~~~dPyv~v~~~~~~-~~T~~~~~-t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~ 72 (119)
T cd08377 1 GFLQVKVIRASGLAAAD------IGGKSDPFCVLELVNAR-LQTHTIYK-TLNPEWNKIFTFPIKDIHDVLEVTVYDEDK 72 (119)
T ss_pred CEEEEEEEeeeCCCCCC------CCCCCCcEEEEEECCEe-eecceecC-CcCCccCcEEEEEecCcCCEEEEEEEECCC
Confidence 78999999999999751 22348999999998876 59999999 999999999999998767899999999998
Q ss_pred CC-ceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEEEEEee
Q 003523 88 VG-AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQFV 136 (813)
Q Consensus 88 ~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f~ 136 (813)
++ +++||++.+++.++..|. ..|++|.+..++. +..|+|+++++|.
T Consensus 73 ~~~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~-~~~G~i~l~~~~~ 119 (119)
T cd08377 73 DKKPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRT-RAKGSILLEMDVI 119 (119)
T ss_pred CCCCceeeEEEEEHHHCCCCC--ceEEECcccCCCC-ceeeEEEEEEEeC
Confidence 66 789999999999998765 5799998755433 3689999999873
No 34
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.78 E-value=1.6e-18 Score=162.24 Aligned_cols=101 Identities=14% Similarity=0.161 Sum_probs=85.2
Q ss_pred EEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEEC-----C-eeeeeeeeccCCCCCCeeeeEEEEEecCC----cceE
Q 003523 9 ILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLD-----K-ARMARTRMITERTSRPHWNQSFRIYCAHR----VSHV 78 (813)
Q Consensus 9 ~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~-----~-~~~~rT~vi~~~t~nP~WNE~F~~~v~~~----~~~l 78 (813)
.|+|+|++|++|+.+ +.+.+||||+|+|- . .+..||+++++ |+||+|||+|.|.+.+. ...|
T Consensus 1 kL~V~Vi~A~~L~~~-------d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~-tlnPvwNE~f~F~v~~~~~~~~~~L 72 (120)
T cd08395 1 KVTVKVVAANDLKWQ-------TTGMFRPFVEVNLIGPHLSDKKRKFATKSKNN-NWSPKYNETFQFILGNEDDPESYEL 72 (120)
T ss_pred CEEEEEEECcCCCcc-------cCCCCCCEEEEEEecCCCcccccEeeeEEecC-CCCCccCcEEEEEeeCcCCCceeEE
Confidence 389999999999864 33448999999983 2 23458999988 99999999999998743 2469
Q ss_pred EEEEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEccC
Q 003523 79 VFTIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIRD 117 (813)
Q Consensus 79 ~~~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~ 117 (813)
.|.|+|+|..+ +++||++.||+.++..++..+.|++|..
T Consensus 73 ~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 73 HICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred EEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 99999999877 6899999999999999888999999964
No 35
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.78 E-value=2.8e-18 Score=161.53 Aligned_cols=118 Identities=19% Similarity=0.289 Sum_probs=98.3
Q ss_pred EEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCcceEEEEEEeCCCC
Q 003523 9 ILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRVSHVVFTIKNDNPV 88 (813)
Q Consensus 9 ~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~~V~D~d~~ 88 (813)
.|.|+|++|++|++++ ..+++||||+|.+++..++||+++++ ++||+|||+|.|++.+....|.|.|+|++.+
T Consensus 1 ~l~v~vi~a~~L~~~d------~~g~~DPYv~v~~~~~~~~kT~v~~~-t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~ 73 (121)
T cd04054 1 SLYIRIVEGKNLPAKD------ITGSSDPYCIVKVDNEVIIRTATVWK-TLNPFWGEEYTVHLPPGFHTVSFYVLDEDTL 73 (121)
T ss_pred CEEEEEEEeeCCcCCC------CCCCCCceEEEEECCEeeeeeeeEcC-CCCCcccceEEEeeCCCCCEEEEEEEECCCC
Confidence 3899999999999752 23348999999999888889999999 9999999999999987768999999999998
Q ss_pred C-ceeEEEEEEecccccCC-ceeeeEEEccCCCCCcCCCCCeEEEEEE
Q 003523 89 G-AILIGRAYVPVEDVAKE-FVIDRSFDIRDEEYKNIPGGSKIHVMLQ 134 (813)
Q Consensus 89 g-~~~IG~~~ipl~~l~~g-~~~~~w~~L~~~~gk~~~~~g~l~l~l~ 134 (813)
+ +++||++.++++.+..+ ...+.|++|...++.. +..|+|++.++
T Consensus 74 ~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~-~~~G~i~l~~~ 120 (121)
T cd04054 74 SRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDE-EVQGEIHLELS 120 (121)
T ss_pred CCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCC-ccccEEEEEEE
Confidence 7 68999999999988764 3478999997532111 24689998875
No 36
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.77 E-value=3.5e-18 Score=161.99 Aligned_cols=122 Identities=16% Similarity=0.218 Sum_probs=99.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecC-CcceEEEEEEeCC
Q 003523 8 GILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAH-RVSHVVFTIKNDN 86 (813)
Q Consensus 8 G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~-~~~~l~~~V~D~d 86 (813)
|.|+|+|++|++|++++. .....+||||+|++++++ .||+++++ +.||+|||+|.|++.+ ..+.|.|+|+|++
T Consensus 1 g~l~v~v~~a~~L~~~~~----~~~~~~dPyv~v~~~~~~-~kT~~~~~-t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~ 74 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDR----SGKGKSDPYAILSVGAQR-FKTQTIPN-TLNPKWNYWCEFPIFSAQNQLLKLILWDKD 74 (128)
T ss_pred CEEEEEEEEeeCCCcccC----CCCCCcCCeEEEEECCEE-EecceecC-CcCCccCCcEEEEecCCCCCEEEEEEEECC
Confidence 789999999999997521 002348999999998765 59999999 9999999999999987 4589999999999
Q ss_pred CCC-ceeEEEEEEecccccC---CceeeeEEEccCCC-CCcCCCCCeEEEEEEe
Q 003523 87 PVG-AILIGRAYVPVEDVAK---EFVIDRSFDIRDEE-YKNIPGGSKIHVMLQF 135 (813)
Q Consensus 87 ~~g-~~~IG~~~ipl~~l~~---g~~~~~w~~L~~~~-gk~~~~~g~l~l~l~f 135 (813)
.++ +++||.+.|++.++.. ....+.||+|.+.. ++.....|+|+|++++
T Consensus 75 ~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 75 RFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 886 7899999999999873 34467999998653 2223468999999864
No 37
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.77 E-value=1.2e-18 Score=167.30 Aligned_cols=96 Identities=18% Similarity=0.389 Sum_probs=88.2
Q ss_pred ccceEEEEEEEEeecCCCCCCCCCccCc-ccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCcceEEEEEE
Q 003523 5 LLHGILIVRIYGIDKLHTGCGFGSCEQI-VGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRVSHVVFTIK 83 (813)
Q Consensus 5 ll~G~L~V~IieA~~L~~~~~~~~~~~~-~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~~V~ 83 (813)
++.|.|+|+|+.|.||..+ +. .+|||||+|.+++++. ||+++.+ ++||+|||+|+|.+.++...|.++||
T Consensus 3 ~~vGLL~v~v~~g~~L~~r-------D~~~sSDPyVVl~lg~q~l-kT~~v~~-n~NPeWNe~ltf~v~d~~~~lkv~Vy 73 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIR-------DFLGSSDPYVVLELGNQKL-KTRVVYK-NLNPEWNEELTFTVKDPNTPLKVTVY 73 (168)
T ss_pred ccceEEEEEEEeecCeeee-------ccccCCCCeEEEEECCeee-eeeeecC-CCCCcccceEEEEecCCCceEEEEEE
Confidence 5889999999999999865 44 5699999999999997 9999999 99999999999999999999999999
Q ss_pred eCCCCC-ceeEEEEEEecccccCCcee
Q 003523 84 NDNPVG-AILIGRAYVPVEDVAKEFVI 109 (813)
Q Consensus 84 D~d~~g-~~~IG~~~ipl~~l~~g~~~ 109 (813)
|+|.++ ||+||.|.||++.+.++...
T Consensus 74 D~D~fs~dD~mG~A~I~l~p~~~~~~~ 100 (168)
T KOG1030|consen 74 DKDTFSSDDFMGEATIPLKPLLEAQKM 100 (168)
T ss_pred eCCCCCcccccceeeeccHHHHHHhhh
Confidence 999998 78999999999999986544
No 38
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.76 E-value=2.1e-18 Score=159.71 Aligned_cols=100 Identities=13% Similarity=0.183 Sum_probs=84.1
Q ss_pred cceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECC---eeeeeeeeccCCCCCCeeeeEEEEEecCC---cceEE
Q 003523 6 LHGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDK---ARMARTRMITERTSRPHWNQSFRIYCAHR---VSHVV 79 (813)
Q Consensus 6 l~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~---~~~~rT~vi~~~t~nP~WNE~F~~~v~~~---~~~l~ 79 (813)
..|.|.|+|++|++|+. .+++||||+|+|.. .+..||+|+++ |+||+|||+|.|.++.. ...|.
T Consensus 12 ~~~~L~V~vikA~~L~~---------~g~sDPYVKv~L~~~~k~~k~kT~v~rk-tlnPvfnE~f~F~v~~~~l~~~tL~ 81 (118)
T cd08677 12 QKAELHVNILEAENISV---------DAGCECYISGCVSVSEGQKEAQTALKKL-ALHTQWEEELVFPLPEEESLDGTLT 81 (118)
T ss_pred cCCEEEEEEEEecCCCC---------CCCCCeEEEEEEcCCcCccEEEcceecC-CCCCccccEEEEeCCHHHhCCcEEE
Confidence 35899999999999982 23489999999952 24558999999 99999999999998753 36799
Q ss_pred EEEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEc
Q 003523 80 FTIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDI 115 (813)
Q Consensus 80 ~~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L 115 (813)
|+|+|.|.++ +++||++.+|+.++..+...+.|.+|
T Consensus 82 ~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 82 LTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 9999999998 68999999999988666667789765
No 39
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=99.76 E-value=3.7e-17 Score=191.56 Aligned_cols=267 Identities=18% Similarity=0.241 Sum_probs=182.8
Q ss_pred chhhHHHHHHHHHhccc-----EEEEEEeccCCceeEecCCCCCCCCCCchhhhhhHHHHHHHHHHHHHcCCeEEEEEec
Q 003523 197 SHRCWEDIFDAIASAEH-----FIYMTGWSMYAPITLLRDPRRIKPKGNITAEEMLKTTLGDLLKKKADEGVKVLLLIWD 271 (813)
Q Consensus 197 ~~~~~~~l~~aI~~Ak~-----~I~I~~w~~~~~~~L~r~~~~~~~g~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD 271 (813)
|-+.|+.+.+.|++|.+ +|.|+-|.+.. +. ++.++|.+||++|++|+++| +
T Consensus 337 PY~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~---------------~s--------~ii~aL~~Aa~~Gk~V~v~v-e 392 (672)
T TIGR03705 337 PYESFDPVVEFLRQAAEDPDVLAIKQTLYRTSK---------------DS--------PIIDALIEAAENGKEVTVVV-E 392 (672)
T ss_pred CccCHHHHHHHHHHHhcCCCceEEEEEEEEecC---------------Cc--------HHHHHHHHHHHcCCEEEEEE-E
Confidence 44567889999999998 89999876532 12 89999999999999999999 6
Q ss_pred CCCCcccccccCcCCCCcHHHHHHHhcCCCEEEEcCCCCCccccccccccccccccccceEEEcCCCCCCCCCcceeEEE
Q 003523 272 DRTSVDILKEDGLMGTHDEETADYFRKTKVRCVLCPRTSEIFTNIRGYQTSSIFTHHQKTVVVDSEVPGGGTQKRRVVSF 351 (813)
Q Consensus 272 ~~~s~~~~~~~g~~~t~~~~~~~~l~~~gV~~~~~~~~p~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~~vaf 351 (813)
-..... ...+-.+.+.|+++||++..-- + .+..|+|+++||.+..+ +-+-.++
T Consensus 393 LkArfd--------e~~ni~wa~~le~aG~~viyg~--~-------------~~k~H~K~~li~r~~~~----~~~~y~~ 445 (672)
T TIGR03705 393 LKARFD--------EEANIRWARRLEEAGVHVVYGV--V-------------GLKTHAKLALVVRREGG----ELRRYVH 445 (672)
T ss_pred ehhhcc--------chhhHHHHHHHHHcCCEEEEcC--C-------------CeeeeeEEEEEEEeeCC----ceEEEEE
Confidence 321110 0113467788999999987511 1 35889999999986211 2222567
Q ss_pred EccccCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCcccccee-eeChHHHHHHHHHHHHHhhccCCC
Q 003523 352 VGGIDLCDGRYDTQEHSLFRTLKTIHRDDFHQPNFPGSSIEKGGPREPWHDIHCK-LEGPVAWDVLYNFEQRWTKQADKK 430 (813)
Q Consensus 352 vGG~nl~~~r~Dt~~H~~~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhD~~~~-i~Gpaa~dl~~~F~~rW~~~~~~~ 430 (813)
+|.-|.... ....|+|+++. ..+..+.|+...|..-|.......
T Consensus 446 igTgN~n~~-----------------------------------ta~~y~D~~l~t~~~~i~~d~~~~F~~l~~~~~~~~ 490 (672)
T TIGR03705 446 LGTGNYHPK-----------------------------------TARLYTDLSLFTADPEIGRDVARVFNYLTGYSRPPK 490 (672)
T ss_pred ecCCCCCCc-----------------------------------ccccccceeEEEeChHHHHHHHHHHHHhhCCCcchh
Confidence 777665542 11468999988 788899999999998875321100
Q ss_pred CCCCCcCcccccCCCCCcCcCCCCceeeEEeeccccCcccCCCCChHHHhhhccccCCCCcchhHHHHHHHHHHHhccc-
Q 003523 431 DLFPPESLHQNLIHPLLDTSKDLESWNVQIFRSIDGTAAADFPTDPFEAARVGLITGKDNVFDRSIQDAYINAIRRAKN- 509 (813)
Q Consensus 431 ~~~~~~~~~~~~~p~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~sI~~ayl~aI~~Ak~- 509 (813)
+. .|..+ |......+.+.+.+.|.+||+
T Consensus 491 -------~~-------------------------------------------~l~~~-P~~~~~~~~~~i~~ei~~Ak~g 519 (672)
T TIGR03705 491 -------FK-------------------------------------------HLLVS-PFTLRKRLLELIDREIENARAG 519 (672)
T ss_pred -------hH-------------------------------------------HHHhC-cchHHHHHHHHHHHHHHHHHcC
Confidence 00 01111 112356788889999999999
Q ss_pred ---eEEEeeccccccccCccccccccchhhhhccchHHHHHHHHHHHHcCCCeEEEEEe-------cCCCCCCCCchhHH
Q 003523 510 ---FIYIENQYFIGSSYGWLSKDIRVEDINALQLIPKELSLKIVSKIEAGEDFRVYIVI-------PMWPEGVPESASVQ 579 (813)
Q Consensus 510 ---~IyIEnqYFi~~~~~~~~~~~~~~~~~~~n~i~~~~a~~i~~a~~~g~~v~V~Ivl-------P~~p~g~~~~~~~~ 579 (813)
+|+|.++||. + ..+..+|..|.++| |+|.+++ |..| |.++...+
T Consensus 520 ~~~~I~ik~n~l~-------D---------------~~ii~aL~~As~aG--V~V~LivRGiCcL~pgip-g~sd~i~v- 573 (672)
T TIGR03705 520 KPARIIAKMNSLV-------D---------------PDLIDALYEASQAG--VKIDLIVRGICCLRPGVP-GLSENIRV- 573 (672)
T ss_pred CCCEEEEEcCCCC-------C---------------HHHHHHHHHHHHCC--CeEEEEEecccccCCCCC-CCCCCEEE-
Confidence 9999999964 2 26778999999999 7888887 2222 11221111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCceEEeecCCccccccCCCCCCCCCCchHHHHHhhccceEEEeeeEEE
Q 003523 580 AILGWQRRTIEMMYADVAQAIQKKGLDDAYPRDYLTFFCLGNRENIEEYNPEQSSESNSDYYKAQKARRFMIYVHSKMMI 659 (813)
Q Consensus 580 ~i~~~~~~t~~~~~~~i~~~L~~~gv~~~~~~~yl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHsK~mI 659 (813)
++ +...+.+ |+|+.+
T Consensus 574 -------~s-------iv~r~Le---------------------------------------------------h~rIy~ 588 (672)
T TIGR03705 574 -------RS-------IVGRFLE---------------------------------------------------HSRIYY 588 (672)
T ss_pred -------EE-------EhhHhhC---------------------------------------------------cCEEEE
Confidence 01 2222322 444444
Q ss_pred E---eceEEEEcccccCcccccCCCCcceEEeeecCC
Q 003523 660 V---DDEYIIIGSANINQRSMDGARDTEIAMGAFQPR 693 (813)
Q Consensus 660 V---DD~~~~iGSaNin~RS~~~~~DsEi~v~i~~~~ 693 (813)
. ||.+++||||||+.|||. +..|+++.++||.
T Consensus 589 f~~~~d~~~~igSAn~m~Rnl~--~r~E~~~~i~d~~ 623 (672)
T TIGR03705 589 FGNGGEEKVYISSADWMTRNLD--RRVEVLFPIEDPT 623 (672)
T ss_pred EeCCCCcEEEEECCCCCCCccc--ceEEEEEEEcCHH
Confidence 3 688999999999999996 5599999999884
No 40
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.76 E-value=2.6e-18 Score=161.13 Aligned_cols=102 Identities=14% Similarity=0.218 Sum_probs=87.4
Q ss_pred cceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECC----eeeeeeeeccCCCCCCeeeeEEEEEecCC--cceEE
Q 003523 6 LHGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDK----ARMARTRMITERTSRPHWNQSFRIYCAHR--VSHVV 79 (813)
Q Consensus 6 l~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~t~nP~WNE~F~~~v~~~--~~~l~ 79 (813)
-+|.|.|+|++|+||+++ +.+++||||+|+|.. ....||+++++ +.||+|||+|.|++.+. ...|.
T Consensus 10 ~~~~L~V~Vi~ar~L~~~-------~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~-t~~P~~nE~F~f~v~~~~~~~~l~ 81 (119)
T cd08685 10 QNRKLTLHVLEAKGLRST-------NSGTCNSYVKISLSPDKEVRFRQKTSTVPD-SANPLFHETFSFDVNERDYQKRLL 81 (119)
T ss_pred cCCEEEEEEEEEECCCCC-------CCCCCCeeEEEEEEeCCCCcceEeCccccC-CCCCccccEEEEEcChHHhCCEEE
Confidence 579999999999999875 334589999999953 33558999998 99999999999998753 25799
Q ss_pred EEEEeCCCCC--ceeEEEEEEecccccCCceeeeEEEc
Q 003523 80 FTIKNDNPVG--AILIGRAYVPVEDVAKEFVIDRSFDI 115 (813)
Q Consensus 80 ~~V~D~d~~g--~~~IG~~~ipl~~l~~g~~~~~w~~L 115 (813)
|+|+|.+..+ +++||.+.||+.++..|..++.||.|
T Consensus 82 v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 82 VTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred EEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 9999998764 58999999999999988889999986
No 41
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.76 E-value=1.2e-17 Score=158.48 Aligned_cols=116 Identities=20% Similarity=0.286 Sum_probs=100.9
Q ss_pred EEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCC---cceEEEEEEeCCCCC-
Q 003523 14 IYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHR---VSHVVFTIKNDNPVG- 89 (813)
Q Consensus 14 IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~---~~~l~~~V~D~d~~g- 89 (813)
|++|++|++. .+++||||+|++++.+ .||+++++ +.||+|||+|.|++.+. .+.|.|+|+|++..+
T Consensus 2 vi~a~~L~~~--------~g~~Dpyv~v~~~~~~-~kT~v~~~-~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~ 71 (127)
T cd08373 2 VVSLKNLPGL--------KGKGDRIAKVTFRGVK-KKTRVLEN-ELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGR 71 (127)
T ss_pred eEEeeCCccc--------CCCCCCEEEEEECCEe-eecceeCC-CcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCC
Confidence 7899999861 2348999999998876 59999999 99999999999999764 578999999999886
Q ss_pred ceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEEEEEeeecccC
Q 003523 90 AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQFVHVVND 141 (813)
Q Consensus 90 ~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f~~~~~~ 141 (813)
+++||.+.++++++..+.....|++|.+.++++ ..|+|++++.|.|...+
T Consensus 72 d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~--~~~~l~l~~~~~~~~~~ 121 (127)
T cd08373 72 NRLIGSATVSLQDLVSEGLLEVTEPLLDSNGRP--TGATISLEVSYQPPDGA 121 (127)
T ss_pred CceEEEEEEEhhHcccCCceEEEEeCcCCCCCc--ccEEEEEEEEEeCCCCc
Confidence 689999999999999988899999998877765 36899999999996543
No 42
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.75 E-value=9.6e-18 Score=160.28 Aligned_cols=120 Identities=18% Similarity=0.336 Sum_probs=98.2
Q ss_pred EEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCe------eeeeeeeccCCCCCCeeeeEEEEEecCCcceEEEEE
Q 003523 9 ILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKA------RMARTRMITERTSRPHWNQSFRIYCAHRVSHVVFTI 82 (813)
Q Consensus 9 ~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~------~~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~~V 82 (813)
+|+|+|++|++|++++ ....+||||+|.+.+. ...||+++++ |.||+|||+|.|.+......|.|+|
T Consensus 1 ~L~v~Vi~a~~L~~~d------~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~l~~~v 73 (133)
T cd04033 1 ILRVKVLAGIDLAKKD------IFGASDPYVKISLYDPDGNGEIDSVQTKTIKK-TLNPKWNEEFFFRVNPREHRLLFEV 73 (133)
T ss_pred CEEEEEEEeECCCccc------CCCCcCcEEEEEEECCCCCCcccceeeeEEcC-CCCCcEeeEEEEEEcCCCCEEEEEE
Confidence 4899999999998751 2234899999999764 2459999998 9999999999999876667899999
Q ss_pred EeCCCCC-ceeEEEEEEecccccCCce------eeeEEEccCCCCCcCCCCCeEEEEEEee
Q 003523 83 KNDNPVG-AILIGRAYVPVEDVAKEFV------IDRSFDIRDEEYKNIPGGSKIHVMLQFV 136 (813)
Q Consensus 83 ~D~d~~g-~~~IG~~~ipl~~l~~g~~------~~~w~~L~~~~gk~~~~~g~l~l~l~f~ 136 (813)
+|++.++ +++||.+.|++.++..+.. .+.||+|....++. +..|+|++++.|.
T Consensus 74 ~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~G~l~~~~~~~ 133 (133)
T cd04033 74 FDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKS-RVKGHLRLYMAYL 133 (133)
T ss_pred EECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCC-cceeEEEEEEeeC
Confidence 9999987 6899999999999886532 46899998543221 3689999999984
No 43
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.75 E-value=1.4e-17 Score=156.99 Aligned_cols=118 Identities=10% Similarity=0.138 Sum_probs=96.8
Q ss_pred EEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCC-cceEEEEEEeCCC
Q 003523 9 ILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHR-VSHVVFTIKNDNP 87 (813)
Q Consensus 9 ~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~-~~~l~~~V~D~d~ 87 (813)
.|+|+|++|++|++++ ....+||||+|++++.. .||+++++ +.||+|||+|.|.+.+. ...|.|+|+|++.
T Consensus 1 ~L~v~vi~a~~L~~~d------~~~~~DPyv~v~~~~~~-~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~ 72 (123)
T cd04025 1 RLRCHVLEARDLAPKD------RNGTSDPFVRVFYNGQT-LETSVVKK-SCYPRWNEVFEFELMEGADSPLSVEVWDWDL 72 (123)
T ss_pred CEEEEEEEeeCCCCCC------CCCCcCceEEEEECCEE-EeceeecC-CCCCccCcEEEEEcCCCCCCEEEEEEEECCC
Confidence 3899999999998751 12348999999998765 59999998 99999999999998765 4679999999998
Q ss_pred CC-ceeEEEEEEecccccCCceeeeEEEccCCCCC---cCCCCCeEEEEEE
Q 003523 88 VG-AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYK---NIPGGSKIHVMLQ 134 (813)
Q Consensus 88 ~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk---~~~~~g~l~l~l~ 134 (813)
++ +++||.+.+++.++..+...+.|++|.....+ .-+..|.|+|.|+
T Consensus 73 ~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 73 VSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred CCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 87 68999999999999887778899999863222 2235688888763
No 44
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.74 E-value=9.5e-18 Score=158.09 Aligned_cols=101 Identities=12% Similarity=0.199 Sum_probs=86.9
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECC----eeeeeeeeccCCCCCCeeeeEEEEEe-cC---CcceE
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDK----ARMARTRMITERTSRPHWNQSFRIYC-AH---RVSHV 78 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~t~nP~WNE~F~~~v-~~---~~~~l 78 (813)
.|.|.|+|++|++|+++ +...+||||+|+|.. ....||+++++ +.||+|||+|.|++ +. ....|
T Consensus 12 ~~~L~V~Vi~A~~L~~~-------~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~-~~nP~wnE~F~f~~~~~~~l~~~~L 83 (122)
T cd08381 12 NGTLFVMVMHAKNLPLL-------DGSDPDPYVKTYLLPDPQKTTKRKTKVVRK-TRNPTFNEMLVYDGLPVEDLQQRVL 83 (122)
T ss_pred CCEEEEEEEEeeCCCCC-------CCCCCCCEEEEEEeeCCccCCceeCCccCC-CCCCCcccEEEEecCChHHhCCCEE
Confidence 68999999999999975 234499999999953 23469999999 99999999999987 32 23689
Q ss_pred EEEEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEc
Q 003523 79 VFTIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDI 115 (813)
Q Consensus 79 ~~~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L 115 (813)
.|+|+|+|.++ +++||++.||++++..++..+.||+|
T Consensus 84 ~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 84 QVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred EEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 99999999987 68999999999999988888999997
No 45
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.74 E-value=8.1e-18 Score=159.09 Aligned_cols=114 Identities=20% Similarity=0.273 Sum_probs=95.9
Q ss_pred EEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCC-----cceEEEEEE
Q 003523 9 ILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHR-----VSHVVFTIK 83 (813)
Q Consensus 9 ~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~-----~~~l~~~V~ 83 (813)
+|+|+|++|++|+... ....+||||+|++++....+|+++.+++.||+|||+|.|.+.+. ...|.|+|+
T Consensus 1 ~L~V~V~sA~~L~~~~------~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~ 74 (125)
T cd04051 1 TLEITIISAEDLKNVN------LFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVY 74 (125)
T ss_pred CEEEEEEEcccCCCCC------cccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEE
Confidence 5899999999999752 23348999999998844569999875589999999999999776 588999999
Q ss_pred eCCCCC-ceeEEEEEEecccccCCce-----eeeEEEccCCCCCcCCCCCeEEE
Q 003523 84 NDNPVG-AILIGRAYVPVEDVAKEFV-----IDRSFDIRDEEYKNIPGGSKIHV 131 (813)
Q Consensus 84 D~d~~g-~~~IG~~~ipl~~l~~g~~-----~~~w~~L~~~~gk~~~~~g~l~l 131 (813)
|++.++ +++||++.|++.++..+.. ...||+|.+++|+ +.|.|+|
T Consensus 75 d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~---~~G~~~~ 125 (125)
T cd04051 75 CERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGK---PQGVLNF 125 (125)
T ss_pred ECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCC---cCeEEeC
Confidence 999866 7899999999999997654 3689999988887 5788875
No 46
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.74 E-value=2.8e-17 Score=157.80 Aligned_cols=114 Identities=19% Similarity=0.323 Sum_probs=94.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCc-ceEEEEEEeCC
Q 003523 8 GILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRV-SHVVFTIKNDN 86 (813)
Q Consensus 8 G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~-~~l~~~V~D~d 86 (813)
|.|+|+|++|++|++.+ ..+.+||||+|+++++. .||+++++ +.||+|||+|.|.+.+.. +.|.|+|+|+|
T Consensus 15 G~L~V~Vi~A~~L~~~d------~~g~~DPYv~v~~~~~~-~kT~vi~~-t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d 86 (136)
T cd08375 15 GRLMVVIVEGRDLKPCN------SNGKSDPYCEVSMGSQE-HKTKVVSD-TLNPKWNSSMQFFVKDLEQDVLCITVFDRD 86 (136)
T ss_pred EEEEEEEEEeeCCCCCC------CCCCcCcEEEEEECCEe-eeccccCC-CCCCccCceEEEEecCccCCEEEEEEEECC
Confidence 89999999999998752 23349999999998765 59999999 999999999999997643 67999999999
Q ss_pred CCC-ceeEEEEEEecccccC-----CceeeeEEEccCCCCCcCCCCCeEEEEEEe
Q 003523 87 PVG-AILIGRAYVPVEDVAK-----EFVIDRSFDIRDEEYKNIPGGSKIHVMLQF 135 (813)
Q Consensus 87 ~~g-~~~IG~~~ipl~~l~~-----g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f 135 (813)
.++ +++||.+.|++.++.. ......|+++.. +..|+|++++.|
T Consensus 87 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~------~~~g~i~l~~~~ 135 (136)
T cd08375 87 FFSPDDFLGRTEIRVADILKETKESKGPITKRLLLHE------VPTGEVVVKLDL 135 (136)
T ss_pred CCCCCCeeEEEEEEHHHhccccccCCCcEEEEecccc------ccceeEEEEEEe
Confidence 887 6899999999999886 234556777732 246899999987
No 47
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.74 E-value=1.4e-17 Score=152.75 Aligned_cols=99 Identities=17% Similarity=0.408 Sum_probs=85.5
Q ss_pred EEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCC-cceEEEEEEeCCC
Q 003523 9 ILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHR-VSHVVFTIKNDNP 87 (813)
Q Consensus 9 ~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~-~~~l~~~V~D~d~ 87 (813)
.|.|+|++|++|++.. ....+||||+|+++++. .||+++++ |.||+|||+|.|++.++ .+.|.|+|+|.+.
T Consensus 1 ~L~V~v~~A~~L~~~~------~~~~~dpyv~v~~~~~~-~kT~v~~~-t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~ 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAK------STKEPSPYVELTVGKTT-QKSKVKER-TNNPVWEEGFTFLVRNPENQELEIEVKDDKT 72 (105)
T ss_pred CEEEEEeeecCCCCcc------cCCCCCcEEEEEECCEE-EeCccccC-CCCCcccceEEEEeCCCCCCEEEEEEEECCC
Confidence 3899999999999741 23349999999999854 59999998 99999999999999874 5789999999987
Q ss_pred CCceeEEEEEEecccccCC--ceeeeEEEccC
Q 003523 88 VGAILIGRAYVPVEDVAKE--FVIDRSFDIRD 117 (813)
Q Consensus 88 ~g~~~IG~~~ipl~~l~~g--~~~~~w~~L~~ 117 (813)
+++||++.|++.++..+ ...+.||+|.+
T Consensus 73 --~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 73 --GKSLGSLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred --CCccEEEEEEHHHhhccccceeeeeEecCC
Confidence 78999999999999864 46899999974
No 48
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.74 E-value=1.9e-17 Score=160.08 Aligned_cols=107 Identities=17% Similarity=0.179 Sum_probs=88.5
Q ss_pred cceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEEC--Ce--eeeeeeeccCCCCCCeeeeEEEEEecCCcceEEEE
Q 003523 6 LHGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLD--KA--RMARTRMITERTSRPHWNQSFRIYCAHRVSHVVFT 81 (813)
Q Consensus 6 l~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~--~~--~~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~~ 81 (813)
-.|.|.|+|++|+||++++. ..+.+||||+|+|- +. ...||+++++ |+||+|||+|.|++......|.|+
T Consensus 27 ~~~~L~V~Vi~ArnL~~~~~-----~~g~sDPYVKv~Llp~~~~~~k~KT~v~kk-tlnPvfNE~F~f~v~l~~~~L~v~ 100 (146)
T cd04028 27 KKGQLEVEVIRARGLVQKPG-----SKVLPAPYVKVYLLEGKKCIAKKKTKIARK-TLDPLYQQQLVFDVSPTGKTLQVI 100 (146)
T ss_pred CCCEEEEEEEEeeCCCcccC-----CCCCcCCeEEEEEECCCccccceeceecCC-CCCCccCCeEEEEEcCCCCEEEEE
Confidence 46899999999999986410 12348999999993 32 2569999999 999999999999998555789999
Q ss_pred EE-eCCCCC-ceeEEEEEEecccccCCceeeeEEEccCC
Q 003523 82 IK-NDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIRDE 118 (813)
Q Consensus 82 V~-D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~ 118 (813)
|+ |++.++ +++||++.|+|+++..+.....||+|+..
T Consensus 101 V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 101 VWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred EEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 99 577766 68999999999999777778899999864
No 49
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.73 E-value=2.2e-17 Score=154.32 Aligned_cols=98 Identities=14% Similarity=0.236 Sum_probs=85.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCcceEEEEEEeCCC
Q 003523 8 GILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRVSHVVFTIKNDNP 87 (813)
Q Consensus 8 G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~~V~D~d~ 87 (813)
|.|.|+|++||+|+.+ .+.||||+|.+++++ .||+++++ + ||+|||+|.|.+.+..+.|+|.|+|+|.
T Consensus 2 ~~L~V~Vv~Ar~L~~~---------~~~dPYV~Ik~g~~k-~kT~v~~~-~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~ 69 (127)
T cd08394 2 SLLCVLVKKAKLDGAP---------DKFNTYVTLKVQNVK-STTIAVRG-S-QPCWEQDFMFEINRLDLGLVIELWNKGL 69 (127)
T ss_pred ceEEEEEEEeeCCCCC---------CCCCCeEEEEECCEE-eEeeECCC-C-CCceeeEEEEEEcCCCCEEEEEEEeCCC
Confidence 6899999999999753 246999999999876 59999876 4 9999999999998877779999999999
Q ss_pred CCceeEEEEEEecccccCCcee--eeEEEccC
Q 003523 88 VGAILIGRAYVPVEDVAKEFVI--DRSFDIRD 117 (813)
Q Consensus 88 ~g~~~IG~~~ipl~~l~~g~~~--~~w~~L~~ 117 (813)
++|++||++.|||.++..+... ..||+|..
T Consensus 70 ~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 70 IWDTLVGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred cCCCceEEEEEEhHHcccCCCCCCCccEecCh
Confidence 8899999999999999976544 68999973
No 50
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.73 E-value=1.9e-17 Score=153.16 Aligned_cols=101 Identities=18% Similarity=0.258 Sum_probs=86.3
Q ss_pred EEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCee-eeEEEEEecCC---cceEEEEEEeC
Q 003523 10 LIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHW-NQSFRIYCAHR---VSHVVFTIKND 85 (813)
Q Consensus 10 L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~W-NE~F~~~v~~~---~~~l~~~V~D~ 85 (813)
|+|+|++|++|+++.. ....+||||+|++++. ..||+++++ ++||+| ||+|.|.+.+. .+.|.|+|+|+
T Consensus 1 l~V~v~~a~~L~~~d~-----~~~~~Dpyv~v~~~~~-~~kT~v~~~-~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~ 73 (110)
T cd08688 1 LKVRVVAARDLPVMDR-----SSDLTDAFVEVKFGST-TYKTDVVKK-SLNPVWNSEWFRFEVDDEELQDEPLQIRVMDH 73 (110)
T ss_pred CEEEEEEEECCCcccc-----CCCCCCceEEEEECCe-eEecceecC-CCCCcccCcEEEEEcChHHcCCCeEEEEEEeC
Confidence 6899999999987521 1234899999999884 569999998 999999 99999998764 36899999999
Q ss_pred CCCC-ceeEEEEEEecccccC---CceeeeEEEccC
Q 003523 86 NPVG-AILIGRAYVPVEDVAK---EFVIDRSFDIRD 117 (813)
Q Consensus 86 d~~g-~~~IG~~~ipl~~l~~---g~~~~~w~~L~~ 117 (813)
+.++ +++||++.+++.++.. +..++.||+|++
T Consensus 74 d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 74 DTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 9987 5899999999999987 456899999986
No 51
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.72 E-value=2.9e-17 Score=155.13 Aligned_cols=103 Identities=18% Similarity=0.241 Sum_probs=89.1
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEE--CCeeeeeeeeccCCCCCCeeeeEEEEEecCC---cceEEEE
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDL--DKARMARTRMITERTSRPHWNQSFRIYCAHR---VSHVVFT 81 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l--~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~---~~~l~~~ 81 (813)
.|.|.|+|++|++|++++ ..+++||||+|++ ++..++||+++++ +.||+|||+|.|.+... ...|.|+
T Consensus 15 ~~~L~V~v~~a~~L~~~d------~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~l~~~~l~i~ 87 (124)
T cd08387 15 MGILNVKLIQARNLQPRD------FSGTADPYCKVRLLPDRSNTKQSKIHKK-TLNPEFDESFVFEVPPQELPKRTLEVL 87 (124)
T ss_pred CCEEEEEEEEeeCCCCCC------CCCCCCCeEEEEEecCCCCcEeCceEcC-CCCCCcccEEEEeCCHHHhCCCEEEEE
Confidence 589999999999999752 2334899999999 4456789999999 99999999999998653 3589999
Q ss_pred EEeCCCCC-ceeEEEEEEecccccCCceeeeEEEcc
Q 003523 82 IKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIR 116 (813)
Q Consensus 82 V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 116 (813)
|+|++.++ +++||.+.|+++++..+...+.|++|+
T Consensus 88 V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 88 LYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred EEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 99999887 689999999999998877889999985
No 52
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.72 E-value=3.3e-17 Score=155.05 Aligned_cols=105 Identities=13% Similarity=0.211 Sum_probs=87.6
Q ss_pred cceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECC----eeeeeeeeccCCCCCCeeeeEEEEEecCC---cceE
Q 003523 6 LHGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDK----ARMARTRMITERTSRPHWNQSFRIYCAHR---VSHV 78 (813)
Q Consensus 6 l~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~t~nP~WNE~F~~~v~~~---~~~l 78 (813)
..|.|.|+|++|+||++++. ..+.+||||+|++.. ....||+++++ +.||+|||+|.|++... ...|
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~-----~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~l~~~~L 86 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDE-----AKKRSNPYVKTYLLPDKSRQSKRKTSIKRN-TTNPVYNETLKYSISHSQLETRTL 86 (125)
T ss_pred CCCeEEEEEEEecCCCccCC-----CCCCCCcEEEEEEEcCCccccceEeeeeeC-CCCCcccceEEEECCHHHhCCCEE
Confidence 35899999999999987521 123489999999942 33469999998 99999999999998652 3579
Q ss_pred EEEEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEcc
Q 003523 79 VFTIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIR 116 (813)
Q Consensus 79 ~~~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 116 (813)
.|+|+|+|.++ +++||++.|++.++......+.|+||.
T Consensus 87 ~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 87 QLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred EEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 99999999887 679999999999998888899999984
No 53
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.72 E-value=9.7e-17 Score=152.13 Aligned_cols=121 Identities=14% Similarity=0.166 Sum_probs=98.9
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCcceEEEEEEeCC
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRVSHVVFTIKNDN 86 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~~V~D~d 86 (813)
++.|+|+|++|++|++.+ ..+.+||||+|.+++++. ||+++++ +.||+|||+|.|.+......|.|+|+|++
T Consensus 2 ~~~~~V~v~~A~~L~~~d------~~g~~dPyv~v~~~~~~~-kT~v~~~-t~nP~Wne~f~f~~~~~~~~l~i~V~d~~ 73 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQD------SGGGADPYVIIKCEGESV-RSPVQKD-TLSPEFDTQAIFYRKKPRSPIKIQVWNSN 73 (126)
T ss_pred cEEEEEEEEeCcCCCCCC------CCCCcCccEEEEECCEEE-EeCccCC-CCCCcccceEEEEecCCCCEEEEEEEECC
Confidence 678999999999998741 223499999999998864 9999998 99999999999998877789999999999
Q ss_pred CCCceeEEEEEEecccccCCceeeeEEEccCCCC-CcCCCCCeEEEEEEeee
Q 003523 87 PVGAILIGRAYVPVEDVAKEFVIDRSFDIRDEEY-KNIPGGSKIHVMLQFVH 137 (813)
Q Consensus 87 ~~g~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~g-k~~~~~g~l~l~l~f~~ 137 (813)
.+++++||.+.+++..+..+ ...|++|..... ..-+..|.|.+++.+.+
T Consensus 74 ~~~d~~lG~~~~~l~~~~~~--~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 74 LLCDEFLGQATLSADPNDSQ--TLRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred CCCCCceEEEEEecccCCCc--CceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 98899999999999876433 347888853211 11236799999998776
No 54
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.72 E-value=5.5e-17 Score=153.19 Aligned_cols=104 Identities=21% Similarity=0.197 Sum_probs=88.5
Q ss_pred cceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECC--eeeeeeeeccCCCCCCeeeeEEEEEecCC---cceEEE
Q 003523 6 LHGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDK--ARMARTRMITERTSRPHWNQSFRIYCAHR---VSHVVF 80 (813)
Q Consensus 6 l~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~--~~~~rT~vi~~~t~nP~WNE~F~~~v~~~---~~~l~~ 80 (813)
-.|.|+|+|++|++|++++ ....+||||+|++.. .++.||+++++ +.||+|||+|.|.+... ...|.|
T Consensus 14 ~~~~L~V~v~~a~~L~~~d------~~~~~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l~~~~l~~ 86 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMD------MGGTSDPYVKVYLLPDKKKKFETKVHRK-TLNPVFNETFTFKVPYSELGNKTLVF 86 (124)
T ss_pred CCCEEEEEEEEeeCCCCcc------CCCCCCCEEEEEEEcCCCCceecccCcC-CCCCceeeeEEEeCCHHHhCCCEEEE
Confidence 3589999999999999752 223489999999953 35679999998 99999999999998652 358999
Q ss_pred EEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEcc
Q 003523 81 TIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIR 116 (813)
Q Consensus 81 ~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 116 (813)
+|+|+|.++ +++||++.|+++++..|...+.|++|.
T Consensus 87 ~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 87 SVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred EEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 999999887 689999999999998888899999984
No 55
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.71 E-value=6.1e-17 Score=157.26 Aligned_cols=104 Identities=17% Similarity=0.234 Sum_probs=85.4
Q ss_pred EEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCe----eeeeeeeccCCCCCCeeeeEEEEEec------------
Q 003523 9 ILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKA----RMARTRMITERTSRPHWNQSFRIYCA------------ 72 (813)
Q Consensus 9 ~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~----~~~rT~vi~~~t~nP~WNE~F~~~v~------------ 72 (813)
.|.|+|++|++|+.. .+.+||||+|++.+. ...||+++++ |.||+|||+|.|++.
T Consensus 1 kL~V~Vi~ArnL~~~--------~g~sDPYV~V~l~~~~~k~~~~kT~v~~~-t~nP~wNE~F~F~v~~~~~~~~~~~~~ 71 (148)
T cd04010 1 KLSVRVIECSDLALK--------NGTCDPYASVTLIYSNKKQDTKRTKVKKK-TNNPQFDEAFYFDVTIDSSPEKKQFEM 71 (148)
T ss_pred CEEEEEEeCcCCCCC--------CCCCCceEEEEEeCCcccCcccCCccEeC-CCCCccceEEEEEEecccccccccccC
Confidence 389999999999852 234899999999652 3458999999 999999999999984
Q ss_pred ---C-CcceEEEEEEeCCCCC-ceeEEEEEEecccccCC-ceeeeEEEccCCCCC
Q 003523 73 ---H-RVSHVVFTIKNDNPVG-AILIGRAYVPVEDVAKE-FVIDRSFDIRDEEYK 121 (813)
Q Consensus 73 ---~-~~~~l~~~V~D~d~~g-~~~IG~~~ipl~~l~~g-~~~~~w~~L~~~~gk 121 (813)
+ ....|.|.|+|++.++ +++||++.||+..+..+ ...+.||+|.....+
T Consensus 72 ~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~ 126 (148)
T cd04010 72 PEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEK 126 (148)
T ss_pred CcccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccc
Confidence 1 1256899999999876 68999999999999986 667899999764433
No 56
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.71 E-value=5.5e-17 Score=152.48 Aligned_cols=104 Identities=20% Similarity=0.289 Sum_probs=91.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCcceEEEEEEeCCC
Q 003523 8 GILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRVSHVVFTIKNDNP 87 (813)
Q Consensus 8 G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~~V~D~d~ 87 (813)
|.|+|+|++|++|++.+ ....+||||+|+++++.++||+++++ +.||+|||+|.|++.+..+.|.|+|+|++.
T Consensus 1 g~L~V~Vi~a~~L~~~d------~~g~~DPYv~v~~~~~~~~kT~~~~~-t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~ 73 (120)
T cd04045 1 GVLRLHIRKANDLKNLE------GVGKIDPYVRVLVNGIVKGRTVTISN-TLNPVWDEVLYVPVTSPNQKITLEVMDYEK 73 (120)
T ss_pred CeEEEEEEeeECCCCcc------CCCCcCCEEEEEECCEEeeceeEECC-CcCCccCceEEEEecCCCCEEEEEEEECCC
Confidence 78999999999999741 22348999999998877889999988 999999999999998877899999999999
Q ss_pred CC-ceeEEEEEEecccccCCceeeeEEEccCCC
Q 003523 88 VG-AILIGRAYVPVEDVAKEFVIDRSFDIRDEE 119 (813)
Q Consensus 88 ~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~ 119 (813)
++ +++||++.+++.++..+ ..+.||-|++.+
T Consensus 74 ~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 74 VGKDRSLGSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred CCCCCeeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence 87 57999999999999987 568899998754
No 57
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.71 E-value=4e-17 Score=154.55 Aligned_cols=103 Identities=13% Similarity=0.140 Sum_probs=86.2
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCc-ccCCcEEEEEECC----eeeeeeeeccCCCCCCeeeeEEEEEecCC---cceE
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQI-VGTALYATVDLDK----ARMARTRMITERTSRPHWNQSFRIYCAHR---VSHV 78 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~-~~sDPYv~v~l~~----~~~~rT~vi~~~t~nP~WNE~F~~~v~~~---~~~l 78 (813)
.+.|.|+|++|+||++++ .. +++||||+|++.. ....||+++++ ++||+|||+|.|++... ...|
T Consensus 14 ~~~L~V~vi~a~~L~~~d------~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~~nE~f~f~v~~~~l~~~~L 86 (125)
T cd08393 14 LRELHVHVIQCQDLAAAD------PKKQRSDPYVKTYLLPDKSNRGKRKTSVKKK-TLNPVFNETLRYKVEREELPTRVL 86 (125)
T ss_pred CCEEEEEEEEeCCCCCcC------CCCCCCCcEEEEEEEcCCCccccccCccCcC-CCCCccCceEEEECCHHHhCCCEE
Confidence 378999999999999752 22 4599999999942 23469999999 99999999999998642 3689
Q ss_pred EEEEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEcc
Q 003523 79 VFTIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIR 116 (813)
Q Consensus 79 ~~~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 116 (813)
.|+|+|+|.++ +++||++.|||.++..+.....||+|+
T Consensus 87 ~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 87 NLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred EEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 99999999887 689999999999997777778999984
No 58
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.71 E-value=1.4e-16 Score=148.46 Aligned_cols=113 Identities=20% Similarity=0.309 Sum_probs=89.5
Q ss_pred EEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCC---cceEEEEEEeC
Q 003523 9 ILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHR---VSHVVFTIKND 85 (813)
Q Consensus 9 ~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~---~~~l~~~V~D~ 85 (813)
.|+|+|++|++|+.. +++||||+|++++++++||+++++ .||+|||+|.|.+.+. ...|.|.|+|.
T Consensus 1 ~L~v~vi~a~~l~~~---------~~~dpyv~v~~~~~~~~kT~~~~~--~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~ 69 (117)
T cd08383 1 SLRLRILEAKNLPSK---------GTRDPYCTVSLDQVEVARTKTVEK--LNPFWGEEFVFDDPPPDVTFFTLSFYNKDK 69 (117)
T ss_pred CeEEEEEEecCCCcC---------CCCCceEEEEECCEEeEecceEEC--CCCcccceEEEecCCccccEEEEEEEEEec
Confidence 389999999999852 458999999999987789999876 8999999999999763 35678888888
Q ss_pred CCCC-ceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEEEEEe
Q 003523 86 NPVG-AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQF 135 (813)
Q Consensus 86 d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f 135 (813)
+..+ +..+|. +++..+..+...+.||+|...+++. +..|+|+|+++|
T Consensus 70 ~~~~~~~~~g~--v~l~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 117 (117)
T cd08383 70 RSKDRDIVIGK--VALSKLDLGQGKDEWFPLTPVDPDS-EVQGSVRLRARY 117 (117)
T ss_pred ccCCCeeEEEE--EEecCcCCCCcceeEEECccCCCCC-CcCceEEEEEEC
Confidence 7664 345665 5555555577789999998755433 367999999987
No 59
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.71 E-value=8.8e-17 Score=151.76 Aligned_cols=116 Identities=17% Similarity=0.220 Sum_probs=92.0
Q ss_pred EEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCcceEEEEEEeCCCCC
Q 003523 10 LIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRVSHVVFTIKNDNPVG 89 (813)
Q Consensus 10 L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~~V~D~d~~g 89 (813)
|+|+|++|++|++++ ....+||||+|++++..+.||+++++ +.||+|||+|.|++.. .+.|.|+|+|++.++
T Consensus 2 l~v~v~~A~~L~~~~------~~~~~dpyv~v~~~~~~~~kT~v~~~-t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~ 73 (123)
T cd08382 2 VRLTVLCADGLAKRD------LFRLPDPFAVITVDGGQTHSTDVAKK-TLDPKWNEHFDLTVGP-SSIITIQVFDQKKFK 73 (123)
T ss_pred eEEEEEEecCCCccC------CCCCCCcEEEEEECCccceEccEEcC-CCCCcccceEEEEeCC-CCEEEEEEEECCCCC
Confidence 899999999998752 12348999999998666779999998 9999999999999965 689999999999886
Q ss_pred ---ceeEEEEEEecccccCCc-eeeeEEEccCCCCC-cCCCCCeEEEEE
Q 003523 90 ---AILIGRAYVPVEDVAKEF-VIDRSFDIRDEEYK-NIPGGSKIHVML 133 (813)
Q Consensus 90 ---~~~IG~~~ipl~~l~~g~-~~~~w~~L~~~~gk-~~~~~g~l~l~l 133 (813)
+++||.+.+++.++.... ....|++|...... .....|+|.+++
T Consensus 74 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 74 KKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 369999999999987543 33679999654321 111357777665
No 60
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.71 E-value=5.8e-17 Score=150.17 Aligned_cols=99 Identities=22% Similarity=0.333 Sum_probs=86.9
Q ss_pred ccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCC-cceEEEEEEeCCCCCceeEEEEEEecccccC-Cceee
Q 003523 33 VGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHR-VSHVVFTIKNDNPVGAILIGRAYVPVEDVAK-EFVID 110 (813)
Q Consensus 33 ~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~-~~~l~~~V~D~d~~g~~~IG~~~ipl~~l~~-g~~~~ 110 (813)
+.+||||+|+++++..+||+++++ +.||+|||+|.|.+++. .+.|.|.|+|++.+++++||++.++|+++.. +...+
T Consensus 11 G~~dPYv~v~v~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~~ 89 (111)
T cd04052 11 GLLSPYAELYLNGKLVYTTRVKKK-TNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVGQ 89 (111)
T ss_pred CCCCceEEEEECCEEEEEEeeecc-CCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhccc
Confidence 349999999999887889999988 99999999999999875 4779999999998888999999999999865 45568
Q ss_pred eEEEccCCCCCcCCCCCeEEEEEEeeec
Q 003523 111 RSFDIRDEEYKNIPGGSKIHVMLQFVHV 138 (813)
Q Consensus 111 ~w~~L~~~~gk~~~~~g~l~l~l~f~~~ 138 (813)
.||+|.+ + +.|+|+++++|.|+
T Consensus 90 ~w~~L~~---~---~~G~i~~~~~~~p~ 111 (111)
T cd04052 90 QWFPLSG---N---GQGRIRISALWKPV 111 (111)
T ss_pred eeEECCC---C---CCCEEEEEEEEecC
Confidence 9999974 2 46999999999985
No 61
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.70 E-value=2.6e-16 Score=148.90 Aligned_cols=114 Identities=19% Similarity=0.277 Sum_probs=93.8
Q ss_pred EEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECC--eeeeeeeeccCCCCCCeeeeEEEEEecCC-cceEEEEEEeC
Q 003523 9 ILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDK--ARMARTRMITERTSRPHWNQSFRIYCAHR-VSHVVFTIKND 85 (813)
Q Consensus 9 ~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~--~~~~rT~vi~~~t~nP~WNE~F~~~v~~~-~~~l~~~V~D~ 85 (813)
.|+|+|++|++|+... ....+||||+|.+.+ ...+||+++++ +.||+|||+|.|++.+. ...|.|+|+|+
T Consensus 2 ~~~V~v~~a~~L~~~~------~~~~~Dpyv~v~~~~~~~~~~kT~~~~~-t~~P~Wne~f~f~i~~~~~~~L~i~v~d~ 74 (126)
T cd04043 2 LFTIRIVRAENLKADS------SNGLSDPYVTLVDTNGKRRIAKTRTIYD-TLNPRWDEEFELEVPAGEPLWISATVWDR 74 (126)
T ss_pred EEEEEEEEeECCCCCC------CCCCCCceEEEEECCCCeeeecccEecC-CCCCcccceEEEEcCCCCCCEEEEEEEEC
Confidence 5899999999999752 223489999999864 35679999998 99999999999999874 47899999999
Q ss_pred CCCC-ceeEEEEEEecccccC---CceeeeEEEccCCCCCcCCCCCeEEEEEEeee
Q 003523 86 NPVG-AILIGRAYVPVEDVAK---EFVIDRSFDIRDEEYKNIPGGSKIHVMLQFVH 137 (813)
Q Consensus 86 d~~g-~~~IG~~~ipl~~l~~---g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f~~ 137 (813)
+..+ +++||++.++++.+.. |...+.|++|. +.|+|++++.+.-
T Consensus 75 d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~--------~~g~i~l~~~~~~ 122 (126)
T cd04043 75 SFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD--------TQGRLLLRVSMEG 122 (126)
T ss_pred CCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcC--------CCCeEEEEEEEee
Confidence 9886 6899999999987543 45678999995 2578999988753
No 62
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.70 E-value=6.7e-17 Score=149.72 Aligned_cols=99 Identities=16% Similarity=0.280 Sum_probs=83.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCccCc-ccCCcEEEEEECC--eeeeeeeeccCCCCCCeeeeEEEEEecCC----cceEEE
Q 003523 8 GILIVRIYGIDKLHTGCGFGSCEQI-VGTALYATVDLDK--ARMARTRMITERTSRPHWNQSFRIYCAHR----VSHVVF 80 (813)
Q Consensus 8 G~L~V~IieA~~L~~~~~~~~~~~~-~~sDPYv~v~l~~--~~~~rT~vi~~~t~nP~WNE~F~~~v~~~----~~~l~~ 80 (813)
|+|+|+|++|++|++.+ .. ..+||||+|++.+ ....||+++++ ++||+|||+|.|.+... ...|.|
T Consensus 1 G~L~V~v~~a~~L~~~d------~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~~~~l~~ 73 (111)
T cd04041 1 GVLVVTIHRATDLPKAD------FGTGSSDPYVTASFAKFGKPLYSTRIIRK-DLNPVWEETWFVLVTPDEVKAGERLSC 73 (111)
T ss_pred CEEEEEEEEeeCCCccc------CCCCCCCccEEEEEccCCCccEeeeeECC-CCCCccceeEEEEeCchhccCCCEEEE
Confidence 89999999999999752 22 3589999999953 34679999999 99999999999987643 368999
Q ss_pred EEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEcc
Q 003523 81 TIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIR 116 (813)
Q Consensus 81 ~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 116 (813)
+|+|+|.++ +++||.+.+++.+|... .+|+++.
T Consensus 74 ~V~d~d~~~~dd~lG~~~i~l~~l~~~---~~~~~~~ 107 (111)
T cd04041 74 RLWDSDRFTADDRLGRVEIDLKELIED---RNWMGRR 107 (111)
T ss_pred EEEeCCCCCCCCcceEEEEEHHHHhcC---CCCCccc
Confidence 999999987 68999999999999843 3798884
No 63
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.69 E-value=1.9e-16 Score=147.37 Aligned_cols=112 Identities=18% Similarity=0.296 Sum_probs=94.5
Q ss_pred EEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCC-cceEEEEEEeCCCC
Q 003523 10 LIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHR-VSHVVFTIKNDNPV 88 (813)
Q Consensus 10 L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~-~~~l~~~V~D~d~~ 88 (813)
|+|+|++|++|++.. ....+||||+|.+++..++||+++.+ +.||+|||+|.|.+... .+.+.|.|+|++..
T Consensus 1 l~v~vi~a~~L~~~~------~~~~~dpyv~v~~~~~~~~~T~v~~~-~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~ 73 (115)
T cd04040 1 LTVDVISAENLPSAD------RNGKSDPFVKFYLNGEKVFKTKTIKK-TLNPVWNESFEVPVPSRVRAVLKVEVYDWDRG 73 (115)
T ss_pred CEEEEEeeeCCCCCC------CCCCCCCeEEEEECCCcceeeceecC-CCCCcccccEEEEeccCCCCEEEEEEEeCCCC
Confidence 689999999999751 22338999999998877789999988 99999999999998763 57899999999988
Q ss_pred C-ceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEE
Q 003523 89 G-AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHV 131 (813)
Q Consensus 89 g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l 131 (813)
+ +++||++.+++.++..+...+.|++|....+. ..|.|.+
T Consensus 74 ~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~~---~~~~~~~ 114 (115)
T cd04040 74 GKDDLLGSAYIDLSDLEPEETTELTLPLDGQGGG---KLGAVFL 114 (115)
T ss_pred CCCCceEEEEEEHHHcCCCCcEEEEEECcCCCCc---cCceEEc
Confidence 6 68999999999999998889999999765444 4566653
No 64
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.69 E-value=7.1e-17 Score=157.17 Aligned_cols=104 Identities=15% Similarity=0.220 Sum_probs=82.2
Q ss_pred EEEEEEEEeecCCCCCCCCC--------ccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEec--CCcceE
Q 003523 9 ILIVRIYGIDKLHTGCGFGS--------CEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCA--HRVSHV 78 (813)
Q Consensus 9 ~L~V~IieA~~L~~~~~~~~--------~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~--~~~~~l 78 (813)
+|.|+|++|++|++++...- .+....+||||+|.++++++ ||+++++ +.||+|||+|.|++. +..+.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~-kT~v~~~-t~nPvWNE~f~f~v~~p~~~~~l 78 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKV-KTSVKKN-SYNPEWNEQIVFPEMFPPLCERI 78 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEee-ecceEcC-CCCCCcceEEEEEeeCCCcCCEE
Confidence 48999999999998642110 01123489999999999875 9999999 999999999999864 345789
Q ss_pred EEEEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEc
Q 003523 79 VFTIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDI 115 (813)
Q Consensus 79 ~~~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L 115 (813)
.|+|+|+|..+ +++||.+.|++.++.... .+.|+|+
T Consensus 79 ~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~-~~~~lp~ 115 (151)
T cd04018 79 KIQIRDWDRVGNDDVIGTHFIDLSKISNSG-DEGFLPT 115 (151)
T ss_pred EEEEEECCCCCCCCEEEEEEEeHHHhccCC-ccccCCc
Confidence 99999999985 789999999999988643 4444444
No 65
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.69 E-value=1.2e-16 Score=147.15 Aligned_cols=96 Identities=11% Similarity=0.183 Sum_probs=79.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCc--ceEEEEEEeC
Q 003523 8 GILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRV--SHVVFTIKND 85 (813)
Q Consensus 8 G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~--~~l~~~V~D~ 85 (813)
|.|.|+|++|++|++.+... ....++||||+|++++.. .||+++++ ++||+|||+|.|++.+.. ..|.|.|+|+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~--~~~~~~DPYv~v~~~~~~-~kT~v~~~-t~nPvWne~f~f~v~~~~~~~~L~~~V~D~ 76 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMT--RTGFDMDPFVIISFGRRV-FRTSWRRH-TLNPVFNERLAFEVYPHEKNFDIQFKVLDK 76 (108)
T ss_pred CEEEEEEEeeeCCCCccccC--CCCCccCceEEEEECCEe-EeeeeecC-CCCCcccceEEEEEeCccCCCEEEEEEEEC
Confidence 78999999999999752110 011238999999998765 59999999 999999999999986533 4799999999
Q ss_pred CCCC-ceeEEEEEEecccccCCc
Q 003523 86 NPVG-AILIGRAYVPVEDVAKEF 107 (813)
Q Consensus 86 d~~g-~~~IG~~~ipl~~l~~g~ 107 (813)
|.++ +++||++.|+|++|..++
T Consensus 77 d~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 77 DKFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCCCCcceEEEEEEHHHHHhhC
Confidence 9987 689999999999999765
No 66
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.69 E-value=2.5e-16 Score=149.50 Aligned_cols=114 Identities=17% Similarity=0.349 Sum_probs=92.8
Q ss_pred EEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCcceEEEEEEeCCCC
Q 003523 9 ILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRVSHVVFTIKNDNPV 88 (813)
Q Consensus 9 ~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~~V~D~d~~ 88 (813)
.|+|+|++|++|++++ ....+||||+|++++.. +||+++.+ +.||+|||+|.|++.+....|.|+|+|+|..
T Consensus 2 ~L~V~vi~a~~L~~~d------~~g~~DPyv~v~~~~~~-~kT~~v~~-t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~ 73 (127)
T cd04027 2 KISITVVCAQGLIAKD------KTGTSDPYVTVQVGKTK-KRTKTIPQ-NLNPVWNEKFHFECHNSSDRIKVRVWDEDDD 73 (127)
T ss_pred eEEEEEEECcCCcCCC------CCCCcCcEEEEEECCEe-eecceecC-CCCCccceEEEEEecCCCCEEEEEEEECCCC
Confidence 5899999999999752 22348999999998754 69999998 9999999999999977667899999999852
Q ss_pred ------------CceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEEEE
Q 003523 89 ------------GAILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVML 133 (813)
Q Consensus 89 ------------g~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l 133 (813)
++++||.+.|++.++..+ .+.|++|...+++. +..|+|.+++
T Consensus 74 ~~~~~~~~~~~~~~~~iG~~~i~l~~~~~~--~~~w~~L~~~~~~~-~~~G~i~~~~ 127 (127)
T cd04027 74 IKSRLKQKFTRESDDFLGQTIIEVRTLSGE--MDVWYNLEKRTDKS-AVSGAIRLHI 127 (127)
T ss_pred cccccceeccccCCCcceEEEEEhHHccCC--CCeEEECccCCCCC-cEeEEEEEEC
Confidence 368999999999987533 56899998655432 3678888864
No 67
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.68 E-value=3.5e-16 Score=148.74 Aligned_cols=104 Identities=20% Similarity=0.252 Sum_probs=84.0
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEEC--CeeeeeeeeccCCCCCCeeeeEEEEE-ecC---CcceEEE
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLD--KARMARTRMITERTSRPHWNQSFRIY-CAH---RVSHVVF 80 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~--~~~~~rT~vi~~~t~nP~WNE~F~~~-v~~---~~~~l~~ 80 (813)
.+.|+|+|++|++|+.++. ....+||||+|.+. +....||+++++ +.||+|||+|.|. +.. ....|.|
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~-----~~~~~DpyV~v~l~~~~~~~~kT~v~~~-t~nP~wnE~F~f~~~~~~~~~~~~L~~ 88 (128)
T cd08388 15 KKALLVNIIECRDLPAMDE-----QSGTSDPYVKLQLLPEKEHKVKTRVLRK-TRNPVYDETFTFYGIPYNQLQDLSLHF 88 (128)
T ss_pred CCEEEEEEEEeECCCCCCC-----CCCCcCCEEEEEEeCCcCceeeccEEcC-CCCCceeeEEEEcccCHHHhCCCEEEE
Confidence 4789999999999997521 11348999999994 344569999999 9999999999994 332 1246999
Q ss_pred EEEeCCCCC-ceeEEEEEEecccccC--CceeeeEEEcc
Q 003523 81 TIKNDNPVG-AILIGRAYVPVEDVAK--EFVIDRSFDIR 116 (813)
Q Consensus 81 ~V~D~d~~g-~~~IG~~~ipl~~l~~--g~~~~~w~~L~ 116 (813)
+|+|+|.++ +++||++.||++++.. +.+...|++|+
T Consensus 89 ~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 89 AVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 999999887 6899999999998854 46789999985
No 68
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.68 E-value=2.6e-16 Score=148.58 Aligned_cols=102 Identities=19% Similarity=0.241 Sum_probs=83.1
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECC----eeeeeeeeccCCCCCCeeeeEEEEEecC----CcceE
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDK----ARMARTRMITERTSRPHWNQSFRIYCAH----RVSHV 78 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~t~nP~WNE~F~~~v~~----~~~~l 78 (813)
.|.|.|+|++|++|++++ ....+||||+|++.+ ..+.||+++++ +.||+|||+|.|++.+ ....|
T Consensus 15 ~~~L~V~vi~a~~L~~~~------~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~l~~~~l 87 (125)
T cd04031 15 TSQLIVTVLQARDLPPRD------DGSLRNPYVKVYLLPDRSEKSKRRTKTVKK-TLNPEWNQTFEYSNVRRETLKERTL 87 (125)
T ss_pred CCEEEEEEEEecCCCCcC------CCCCCCCEEEEEEccCCCccccccccccCC-CCCCccccEEEEcccCHHHhCCCEE
Confidence 488999999999998751 223489999999964 34569999998 9999999999999754 24689
Q ss_pred EEEEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEcc
Q 003523 79 VFTIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIR 116 (813)
Q Consensus 79 ~~~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 116 (813)
.|+|+|++.++ +++||++.+++++.... ....||+|+
T Consensus 88 ~~~V~d~~~~~~~~~iG~~~i~l~~~~~~-~~~~W~~L~ 125 (125)
T cd04031 88 EVTVWDYDRDGENDFLGEVVIDLADALLD-DEPHWYPLQ 125 (125)
T ss_pred EEEEEeCCCCCCCcEeeEEEEeccccccc-CCcceEECc
Confidence 99999999887 68999999999984332 246899984
No 69
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.68 E-value=5.7e-16 Score=150.90 Aligned_cols=118 Identities=21% Similarity=0.359 Sum_probs=92.5
Q ss_pred EEEEEEEeec--CCCCCCCCCccCcccCCcEEEEEE----CCeeeeeeeeccCCCCCCeeeeEEEEEecCC---------
Q 003523 10 LIVRIYGIDK--LHTGCGFGSCEQIVGTALYATVDL----DKARMARTRMITERTSRPHWNQSFRIYCAHR--------- 74 (813)
Q Consensus 10 L~V~IieA~~--L~~~~~~~~~~~~~~sDPYv~v~l----~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~--------- 74 (813)
.+++|..|++ |+... ....+||||++++ .+....||+++++ |+||+|||+|.|.+...
T Consensus 4 ~el~i~~~~~~~l~~~~------~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~-TlnPvfNE~f~f~I~~~~~~~~R~l~ 76 (155)
T cd08690 4 IELTIVRCIGIPLPSGW------NPKDLDTYVKFEFPYPNEEPQSGKTSTIKD-TNSPEYNESFKLNINRKHRSFQRVFK 76 (155)
T ss_pred eEEEEEEeeccccCCCc------CCCCCCeEEEEEEecCCCCCceeecCcccC-CCCCcccceEEEEeccccchhhhhcc
Confidence 4555555665 55431 1223899999998 4555679999999 99999999999998644
Q ss_pred cceEEEEEEeCCCC--CceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEEEEEeee
Q 003523 75 VSHVVFTIKNDNPV--GAILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQFVH 137 (813)
Q Consensus 75 ~~~l~~~V~D~d~~--g~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f~~ 137 (813)
...|.|+|+|++.+ .|++||++.|+|+.+......+.|++|++ ..|+ -+|+|+++++...
T Consensus 77 ~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~-~~k~--~Gg~l~v~ir~r~ 138 (155)
T cd08690 77 RHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMD-GRKA--TGGKLEVKVRLRE 138 (155)
T ss_pred CCcEEEEEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhh-CCCC--cCCEEEEEEEecC
Confidence 24699999999986 47899999999999988777888999985 3343 5899999999764
No 70
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.67 E-value=2.2e-16 Score=150.02 Aligned_cols=102 Identities=14% Similarity=0.179 Sum_probs=84.5
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCc-ccCCcEEEEEECC----eeeeeeeeccCCCCCCeeeeEEEEEecCC---cceE
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQI-VGTALYATVDLDK----ARMARTRMITERTSRPHWNQSFRIYCAHR---VSHV 78 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~-~~sDPYv~v~l~~----~~~~rT~vi~~~t~nP~WNE~F~~~v~~~---~~~l 78 (813)
.+.|.|+|++|+||++++ .. +.+||||+|+|.. ....||+++++ +.||+|||+|.|++... ...|
T Consensus 14 ~~~L~V~V~~a~nL~~~d------~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~-t~nPvfNE~F~f~v~~~~l~~~~L 86 (128)
T cd08392 14 TSCLEITIKACRNLAYGD------EKKKKCHPYVKVCLLPDKSHNSKRKTAVKKG-TVNPVFNETLKYVVEADLLSSRQL 86 (128)
T ss_pred CCEEEEEEEecCCCCccC------CCCCCCCeEEEEEEEeCCcccceeecccccC-CCCCccceEEEEEcCHHHhCCcEE
Confidence 488999999999998751 22 4589999999942 22459999999 99999999999998653 3689
Q ss_pred EEEEEeCCCCC-ceeEEEEEEecccccC---CceeeeEEEc
Q 003523 79 VFTIKNDNPVG-AILIGRAYVPVEDVAK---EFVIDRSFDI 115 (813)
Q Consensus 79 ~~~V~D~d~~g-~~~IG~~~ipl~~l~~---g~~~~~w~~L 115 (813)
.|+|+|.+.++ +++||++.|++.++.- +.....||+|
T Consensus 87 ~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 87 QVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 99999999876 6899999999998854 4467899998
No 71
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.67 E-value=3.1e-16 Score=145.25 Aligned_cols=97 Identities=15% Similarity=0.182 Sum_probs=84.0
Q ss_pred EEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCC-----cceEEEEEE
Q 003523 9 ILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHR-----VSHVVFTIK 83 (813)
Q Consensus 9 ~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~-----~~~l~~~V~ 83 (813)
.|+|+|++|++|+. +.+||||+|.+++++. ||+++++ +.||+|||+|.|.+... ...|.|+|+
T Consensus 5 ~l~V~v~~a~~L~~----------~~~dpyv~v~~~~~~~-kT~~~~~-t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~ 72 (111)
T cd04011 5 QVRVRVIEARQLVG----------GNIDPVVKVEVGGQKK-YTSVKKG-TNCPFYNEYFFFNFHESPDELFDKIIKISVY 72 (111)
T ss_pred EEEEEEEEcccCCC----------CCCCCEEEEEECCEee-eeeEEec-cCCCccccEEEEecCCCHHHHhcCeEEEEEE
Confidence 58999999999973 2389999999998764 9999998 99999999999997543 257999999
Q ss_pred eCCCCC-ceeEEEEEEecccccCC---ceeeeEEEccC
Q 003523 84 NDNPVG-AILIGRAYVPVEDVAKE---FVIDRSFDIRD 117 (813)
Q Consensus 84 D~d~~g-~~~IG~~~ipl~~l~~g---~~~~~w~~L~~ 117 (813)
|++.++ +++||++.|+++++..+ .....|++|.+
T Consensus 73 d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 73 DSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred cCcccccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 999887 68999999999999875 44789999975
No 72
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.67 E-value=3.1e-16 Score=148.61 Aligned_cols=102 Identities=15% Similarity=0.191 Sum_probs=86.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECC----eeeeeeeeccCCCCCCeeeeEEEEEecCC---cceEEE
Q 003523 8 GILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDK----ARMARTRMITERTSRPHWNQSFRIYCAHR---VSHVVF 80 (813)
Q Consensus 8 G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~t~nP~WNE~F~~~v~~~---~~~l~~ 80 (813)
|.|+|+|++|+||++++ ....+||||+|.+.. ....||+++++ +.||+|||+|.|.+... ...|.|
T Consensus 16 ~~L~V~vi~a~~L~~~~------~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-~~nP~wne~f~f~i~~~~l~~~~l~i 88 (127)
T cd04030 16 QKLIVTVHKCRNLPPCD------SSDIPDPYVRLYLLPDKSKSTRRKTSVKKD-NLNPVFDETFEFPVSLEELKRRTLDV 88 (127)
T ss_pred CEEEEEEEEEECCCCcc------CCCCCCceEEEEEEcCCCCCceEecccccC-CCCCEECeEEEEecCHHHhcCCEEEE
Confidence 78999999999999752 223489999999953 34569999999 99999999999998542 368999
Q ss_pred EEEeCCCC--C-ceeEEEEEEecccccCCceeeeEEEcc
Q 003523 81 TIKNDNPV--G-AILIGRAYVPVEDVAKEFVIDRSFDIR 116 (813)
Q Consensus 81 ~V~D~d~~--g-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 116 (813)
+|+|.+.+ + +++||.+.|++.++..+...+.||+|.
T Consensus 89 ~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 89 AVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred EEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 99999875 4 689999999999998888889999984
No 73
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.67 E-value=3.1e-16 Score=148.13 Aligned_cols=103 Identities=15% Similarity=0.258 Sum_probs=88.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCC----cceEEEEEE
Q 003523 8 GILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHR----VSHVVFTIK 83 (813)
Q Consensus 8 G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~----~~~l~~~V~ 83 (813)
|.|+|+|++|++|++.. ....+||||+|.++++. .+|+++.+++.||+|||+|.|.+.+. ...|.|.|+
T Consensus 1 g~L~V~V~~A~~L~~~~------~~~~~dpyv~v~~~~~~-~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~ 73 (124)
T cd04049 1 GTLEVLLISAKGLQDTD------FLGKIDPYVIIQCRTQE-RKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIM 73 (124)
T ss_pred CeEEEEEEecCCCCCCC------CCCCcCceEEEEECCEe-eeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEE
Confidence 78999999999998741 22348999999998875 48888875589999999999999876 478999999
Q ss_pred eCCCCC-ceeEEEEEEecccccCCceeeeEEEccC
Q 003523 84 NDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIRD 117 (813)
Q Consensus 84 D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~ 117 (813)
|.+.++ +++||++.|++.++..+...+.|++|..
T Consensus 74 d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 74 DKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred ECccCCCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 999886 6899999999999998888899999964
No 74
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.67 E-value=2.7e-16 Score=148.31 Aligned_cols=102 Identities=16% Similarity=0.286 Sum_probs=84.4
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEEC--C---eeeeeeeeccCCCCCCeeeeEEEEEecCC---cceE
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLD--K---ARMARTRMITERTSRPHWNQSFRIYCAHR---VSHV 78 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~--~---~~~~rT~vi~~~t~nP~WNE~F~~~v~~~---~~~l 78 (813)
.|.|.|+|++|+||++. +....+||||+|+|- + ....||+++++ +.||+|||+|.|++++. ...|
T Consensus 13 ~~~L~V~V~~arnL~~~------~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~-t~nPvfnE~F~f~v~~~~L~~~~L 85 (124)
T cd08680 13 DSSLVISVEQLRNLSAL------SIPENSKVYVRVALLPCSSSTSCLFRTKALED-QDKPVFNEVFRVPISSTKLYQKTL 85 (124)
T ss_pred CCEEEEEEeEecCCccc------ccCCCCCeEEEEEEccCCCCCCceEEcCccCC-CCCCccccEEEEECCHHHhhcCEE
Confidence 57899999999999874 123348999999993 2 23569999999 99999999999998753 3689
Q ss_pred EEEEEeCCCCC-ceeEEEEEEecccccC-CceeeeEEEc
Q 003523 79 VFTIKNDNPVG-AILIGRAYVPVEDVAK-EFVIDRSFDI 115 (813)
Q Consensus 79 ~~~V~D~d~~g-~~~IG~~~ipl~~l~~-g~~~~~w~~L 115 (813)
.|+|+|.+.++ +++||.+.|++.++.. +.....||+|
T Consensus 86 ~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 86 QVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 99999999887 6899999999999944 4457889976
No 75
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.67 E-value=9e-16 Score=147.30 Aligned_cols=118 Identities=19% Similarity=0.243 Sum_probs=93.9
Q ss_pred EEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCC----------cceE
Q 003523 9 ILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHR----------VSHV 78 (813)
Q Consensus 9 ~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~----------~~~l 78 (813)
.|+|+|++|++|++++ ....+||||+|.+++.+ .||+++++ |.||+|||+|.|++.+. ...|
T Consensus 2 ~l~v~V~~a~~L~~~d------~~g~~dpyv~v~~~~~~-~kT~v~~~-t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l 73 (135)
T cd04017 2 QLRAYIYQARDLLAAD------KSGLSDPFARVSFLNQS-QETEVIKE-TLSPTWDQTLIFDEVELYGSPEEIAQNPPLV 73 (135)
T ss_pred EEEEEEEEeecCcCCC------CCCCCCCEEEEEECCee-eEeeeEcC-CCCCccCcEEEEeeeeccCChHHhhcCCCEE
Confidence 4899999999998752 23348999999998765 59999998 99999999999975321 2469
Q ss_pred EEEEEeCCCCC-ceeEEEEEE-ecccccC---CceeeeEEEccCCCCCcCCCCCeEEEEEEeeec
Q 003523 79 VFTIKNDNPVG-AILIGRAYV-PVEDVAK---EFVIDRSFDIRDEEYKNIPGGSKIHVMLQFVHV 138 (813)
Q Consensus 79 ~~~V~D~d~~g-~~~IG~~~i-pl~~l~~---g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f~~~ 138 (813)
.|+|+|+|.++ +++||++.+ |+..+.. +.....|++|.. .++ ..|+|.+.+.+.++
T Consensus 74 ~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~-~~~---~~Geil~~~~~~~~ 134 (135)
T cd04017 74 VVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK-GGQ---SAGELLAAFELIEV 134 (135)
T ss_pred EEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec-CCC---chhheeEEeEEEEe
Confidence 99999999987 689999997 5554443 456789999963 333 57999999998875
No 76
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.66 E-value=4e-16 Score=146.85 Aligned_cols=103 Identities=15% Similarity=0.233 Sum_probs=86.1
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECC--e--eeeeeeeccCCCCCCeeeeEEEEEecCC---cceEE
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDK--A--RMARTRMITERTSRPHWNQSFRIYCAHR---VSHVV 79 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~--~--~~~rT~vi~~~t~nP~WNE~F~~~v~~~---~~~l~ 79 (813)
.|.|+|+|++|+||++++. ....+||||+|++.. . ..+||+++++ +.||+|||+|.|++... ...|.
T Consensus 13 ~~~L~V~v~~a~~L~~~~~-----~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~f~f~i~~~~l~~~~l~ 86 (123)
T cd08521 13 TGSLEVHIKECRNLAYADE-----KKKRSNPYVKVYLLPDKSKQSKRKTSVKKN-TTNPVFNETLKYHISKSQLETRTLQ 86 (123)
T ss_pred CCEEEEEEEEecCCCCcCC-----CCCCCCcEEEEEEecCCCcCceeeccccCC-CCCCcccceEEEeCCHHHhCCCEEE
Confidence 5899999999999997520 123489999999932 1 3569999988 99999999999997642 45899
Q ss_pred EEEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEc
Q 003523 80 FTIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDI 115 (813)
Q Consensus 80 ~~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L 115 (813)
|+|+|++.++ +++||++.+++.++..+...+.||+|
T Consensus 87 i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 87 LSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 9999999887 68999999999999878788999987
No 77
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.66 E-value=5.1e-16 Score=146.72 Aligned_cols=103 Identities=17% Similarity=0.192 Sum_probs=86.2
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEE--CCeeeeeeeeccCCCCCCeeeeEEEEEecCC----cceEEE
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDL--DKARMARTRMITERTSRPHWNQSFRIYCAHR----VSHVVF 80 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l--~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~----~~~l~~ 80 (813)
.+.|+|+|++|++|+.++ ...++||||+|++ ++....||+++++ +.||+|||+|.|++... ...|.|
T Consensus 15 ~~~L~v~v~~a~~L~~~d------~~~~~dpyv~v~~~~~~~~~~kT~v~~~-t~~P~Wne~f~f~~~~~~~l~~~~l~~ 87 (125)
T cd08386 15 ESTLTLKILKAVELPAKD------FSGTSDPFVKIYLLPDKKHKLETKVKRK-NLNPHWNETFLFEGFPYEKLQQRVLYL 87 (125)
T ss_pred CCEEEEEEEEecCCCCcc------CCCCCCceEEEEECCCCCcceeeeeecC-CCCCccceeEEEcccCHHHhCCCEEEE
Confidence 468999999999998642 2234899999999 3344579999999 99999999999974321 256999
Q ss_pred EEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEcc
Q 003523 81 TIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIR 116 (813)
Q Consensus 81 ~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 116 (813)
+|+|+|.++ +++||.+.|++.++..+...+.|++|.
T Consensus 88 ~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 88 QVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred EEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 999999887 689999999999999888899999985
No 78
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.66 E-value=6.8e-17 Score=155.01 Aligned_cols=111 Identities=18% Similarity=0.288 Sum_probs=90.6
Q ss_pred cceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECC--e--eeeeeeeccCCCCCCeeeeEEEEEecCC---cceE
Q 003523 6 LHGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDK--A--RMARTRMITERTSRPHWNQSFRIYCAHR---VSHV 78 (813)
Q Consensus 6 l~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~--~--~~~rT~vi~~~t~nP~WNE~F~~~v~~~---~~~l 78 (813)
..|.|.|+|++|+||++++ .....++||||+|+|.. + ...||+++++ ++||+|||+|.|.+++. ...|
T Consensus 13 ~~~~L~V~V~karnL~~~d----~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~-t~nPvfNE~f~F~v~~~~L~~~~L 87 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQ----LKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKH-KINPVWNEMIMFELPSELLAASSV 87 (138)
T ss_pred CCCeEEEEEEEecCCCccc----cCCCCCCCeEEEEEEEcCCcccceeccceeeC-CCCCccccEEEEECCHHHhCccEE
Confidence 3589999999999999751 11234589999999953 2 2458999998 99999999999998763 3679
Q ss_pred EEEEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEccCCCCCcC
Q 003523 79 VFTIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNI 123 (813)
Q Consensus 79 ~~~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~ 123 (813)
.|+|+|+|.++ +++||++.|++.. .|.+.++|.+++...++++
T Consensus 88 ~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~p~~~v 131 (138)
T cd08407 88 ELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDNPRRQI 131 (138)
T ss_pred EEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhCCCCch
Confidence 99999999988 6899999999974 6778889999987666654
No 79
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.65 E-value=5.1e-16 Score=151.38 Aligned_cols=99 Identities=18% Similarity=0.257 Sum_probs=83.9
Q ss_pred cceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCe----------------------------eeeeeeeccCC
Q 003523 6 LHGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKA----------------------------RMARTRMITER 57 (813)
Q Consensus 6 l~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~----------------------------~~~rT~vi~~~ 57 (813)
..+.|+|+|++|++|++++ ..+.+||||+|.+... .++||+++++
T Consensus 26 ~~~~L~V~vi~a~~L~~~d------~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~- 98 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAKD------VNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQ- 98 (153)
T ss_pred CeEEEEEEEEeccCCcccC------CCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecC-
Confidence 4689999999999999752 2234999999999632 3468999999
Q ss_pred CCCCeeeeEEEEEecCC-cceEEEEEEeCCCCCceeEEEEEEecccccCCceeeeEEEc
Q 003523 58 TSRPHWNQSFRIYCAHR-VSHVVFTIKNDNPVGAILIGRAYVPVEDVAKEFVIDRSFDI 115 (813)
Q Consensus 58 t~nP~WNE~F~~~v~~~-~~~l~~~V~D~d~~g~~~IG~~~ipl~~l~~g~~~~~w~~L 115 (813)
|+||+|||+|.|++.+. .+.|.|+|+|++ +++||++.|+++++.+ ..++.||+|
T Consensus 99 tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 99 TLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred CCCCccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 99999999999999764 478999999998 8899999999999984 447999987
No 80
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=99.65 E-value=3.5e-14 Score=153.37 Aligned_cols=355 Identities=16% Similarity=0.152 Sum_probs=202.2
Q ss_pred hHHHHHHHHHhcccEEEEEEeccCCce-eEecCCCCCCCCCCchhhhhhHHHHHHHHHHHHHcCCeEEEEEecCCCCccc
Q 003523 200 CWEDIFDAIASAEHFIYMTGWSMYAPI-TLLRDPRRIKPKGNITAEEMLKTTLGDLLKKKADEGVKVLLLIWDDRTSVDI 278 (813)
Q Consensus 200 ~~~~l~~aI~~Ak~~I~I~~w~~~~~~-~L~r~~~~~~~g~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~ 278 (813)
..++.++.|++|+++++|..|..+=.. ++--++.. ..+...+..+|..++.+||.|||.. .......
T Consensus 73 T~eaW~~Ll~sA~~eldIas~ywsL~~~d~~~~dsS----------t~~G~~vy~~L~~~~~~gIsiriA~-~~p~~~~- 140 (456)
T KOG3603|consen 73 TKEAWLELLSTAQEELDIASFYWSLTGKDTGVVDSS----------TQYGEQVYNTLLALAKSGVKIRIAQ-SYPSGGP- 140 (456)
T ss_pred HHHHHHHHhhccceEEEEEEEeeccccceeccCCCc----------chHHHHHHHHHHHhccCCeEEEEEe-ecCCCCC-
Confidence 458899999999999999885432110 11000111 0123388999999999999999986 4322111
Q ss_pred ccccCcCCCCcHHHHHHHhcCC-CEEEEcCCCCCccccccccccccccccccceEEEcCCCCCCCCCcceeEEEEccccC
Q 003523 279 LKEDGLMGTHDEETADYFRKTK-VRCVLCPRTSEIFTNIRGYQTSSIFTHHQKTVVVDSEVPGGGTQKRRVVSFVGGIDL 357 (813)
Q Consensus 279 ~~~~g~~~t~~~~~~~~l~~~g-V~~~~~~~~p~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~nl 357 (813)
++.-...|.+.| ++++-.+.+ . .......|-|+.|||.+ .-|+||.|+
T Consensus 141 ----------~~~d~~~Le~~Gaa~vr~id~~----~------l~g~GvlHtKf~vvD~k-----------hfylGSaNf 189 (456)
T KOG3603|consen 141 ----------PNADLQVLESLGLAQVRSIDMN----R------LTGGGVLHTKFWVVDIK-----------HFYLGSANF 189 (456)
T ss_pred ----------CcccHHHHHhCCCceEEeeccc----c------cccCceEEEEEEEEecc-----------eEEEecccc
Confidence 112345667777 666543311 1 11145789999999999 999999999
Q ss_pred CCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCccccceeeeC-h-HHHHHHHHHHHHHhhccCCCCCCCC
Q 003523 358 CDGRYDTQEHSLFRTLKTIHRDDFHQPNFPGSSIEKGGPREPWHDIHCKLEG-P-VAWDVLYNFEQRWTKQADKKDLFPP 435 (813)
Q Consensus 358 ~~~r~Dt~~H~~~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhD~~~~i~G-p-aa~dl~~~F~~rW~~~~~~~~~~~~ 435 (813)
.+.-. | .--.+++.++- | .|.||...|++.|.....+....+.
T Consensus 190 DWrSl-T----------------------------------qvkElGv~v~NCpclakDL~kiFe~yW~lg~~~s~~p~~ 234 (456)
T KOG3603|consen 190 DWRSL-T----------------------------------QVKELGVVVRNCPCLAKDLKKIFERYWYLGNAKSLIPKK 234 (456)
T ss_pred chhhc-c----------------------------------ceeEeeeEEecChhHHHHHHHHHHHHhcCCCCCccCCCC
Confidence 86411 1 01233444432 3 7999999999999876443211110
Q ss_pred cC--cccccCCCCCcCc-CCCCceeeEEeeccccCcccCCCCChHHHhhhccccCCCCcchhHHHHHHHHHHHhccceEE
Q 003523 436 ES--LHQNLIHPLLDTS-KDLESWNVQIFRSIDGTAAADFPTDPFEAARVGLITGKDNVFDRSIQDAYINAIRRAKNFIY 512 (813)
Q Consensus 436 ~~--~~~~~~p~~~~~~-~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~sI~~ayl~aI~~Ak~~Iy 512 (813)
.. ++....-+.|... -+......++.-| | ..++..+.. -=.+|+++.|..|+.|||
T Consensus 235 wp~~~st~~N~~~p~~~~~dg~~~~~y~saS------------P------~~~~~~grt---~DL~ail~~i~~A~~fv~ 293 (456)
T KOG3603|consen 235 WPNCYSTHYNKPLPMKIAVDGTPATPYISAS------------P------PPLNPSGRT---WDLEAILNTIDEAQKFVY 293 (456)
T ss_pred CcccccccccccCcceeecCCCCcceEEccC------------C------CCCCCCCCc---hhHHHHHHHHHHHhhhee
Confidence 00 0000000001100 0111112222211 1 111122222 227899999999999999
Q ss_pred EeeccccccccC-ccccccccchhhhhccchHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCchhHHHHHHHHHHHHHH
Q 003523 513 IENQYFIGSSYG-WLSKDIRVEDINALQLIPKELSLKIVSKIEAGEDFRVYIVIPMWPEGVPESASVQAILGWQRRTIEM 591 (813)
Q Consensus 513 IEnqYFi~~~~~-~~~~~~~~~~~~~~n~i~~~~a~~i~~a~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~~t~~~ 591 (813)
|.-.-+.|+... -|. +. - +|-++|.+|+-|| |+|++++..|+...+. +..+| ++
T Consensus 294 isVMdY~Ps~~y~k~~-----------~f-w-~iDdaiR~aa~Rg--V~vR~lvs~~~~~~~~---m~~~L----~S--- 348 (456)
T KOG3603|consen 294 ISVMDYFPSTIYSKNH-----------RF-W-EIDDAIRRAAVRG--VKVRLLVSCWKHSEPS---MFRFL----RS--- 348 (456)
T ss_pred eeehhccchheeecCc-----------ch-h-hhhHHHHHHhhcc--eEEEEEEeccCCCCch---HHHHH----HH---
Confidence 986544454332 111 11 1 4567788887789 9999999998765442 11111 11
Q ss_pred HHHHHHHHHHH--cCCCCCCCCCceEEeecCCccccccCCCCCCCCCCchHHHHHhhccceEEEeeeEEEEeceEEEEcc
Q 003523 592 MYADVAQAIQK--KGLDDAYPRDYLTFFCLGNRENIEEYNPEQSSESNSDYYKAQKARRFMIYVHSKMMIVDDEYIIIGS 669 (813)
Q Consensus 592 ~~~~i~~~L~~--~gv~~~~~~~yl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHsK~mIVDD~~~~iGS 669 (813)
++.|.. +...+. ++||-...-. +. .-++. | ..|+|.||-++ .++||+
T Consensus 349 -----Lq~l~~~~~~~~iq-----vk~f~VP~~~----~~-------~ip~~-----R----v~HnKymVTe~-aayIGT 397 (456)
T KOG3603|consen 349 -----LQDLSDPLENGSIQ-----VKFFIVPQTN----IE-------KIPFA-----R----VNHNKYMVTES-AAYIGT 397 (456)
T ss_pred -----HHHhcCccccCceE-----EEEEEeCCCc----cc-------cCchh-----h----hccceeEEeec-ceeeec
Confidence 122221 111222 4555432110 00 01111 1 68999999997 899999
Q ss_pred cccCcccccCCCCcceEEeeecCCccCCCCchhhhHHHHHHHHHH
Q 003523 670 ANINQRSMDGARDTEIAMGAFQPRHLNTTEPARGQIYGFRIALWY 714 (813)
Q Consensus 670 aNin~RS~~~~~DsEi~v~i~~~~~~~~~~~~~~~~~~lR~~Lw~ 714 (813)
+||..--|..+ +-++|+|.++.+ .+..+.+++....|-|.
T Consensus 398 SNws~dYf~~T--aG~~ivv~q~~~---~~~~~~ql~~vFeRdW~ 437 (456)
T KOG3603|consen 398 SNWSGDYFTST--AGTAIVVRQTPH---KGTLVSQLKAVFERDWN 437 (456)
T ss_pred cCCCccceecc--CceEEEEecCCC---CCcHHHHHHHHHhhccc
Confidence 99988888766 789999987752 23566677777777774
No 81
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.64 E-value=1.9e-15 Score=139.54 Aligned_cols=104 Identities=18% Similarity=0.431 Sum_probs=78.6
Q ss_pred EEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECC----eeeeeeeeccCCCCCCeeeeEEEEEecCCcceEEEEEEeC
Q 003523 10 LIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDK----ARMARTRMITERTSRPHWNQSFRIYCAHRVSHVVFTIKND 85 (813)
Q Consensus 10 L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~~V~D~ 85 (813)
|+|+|.+|++|+.. +||||++.++. ..++|||++++ |+||+|||+|.|++.. ...|.|.|+|+
T Consensus 1 L~V~V~~A~~L~~~-----------sDPYV~l~v~~~~~~~~~~KTk~i~~-TlnPvWnE~F~i~l~~-s~~L~~~v~d~ 67 (118)
T cd08686 1 LNVIVHSAQGFKQS-----------ANLYCTLEVDSFGYFVKKAKTRVCRD-TTEPNWNEEFEIELEG-SQTLRILCYEK 67 (118)
T ss_pred CEEEEEeCCCCCCC-----------CCCEEEEEEcCccccceeeeeeeecC-CCCCccceEEEEEeCC-CCEEEEEEEEc
Confidence 68999999999742 79999999964 35689999999 9999999999999974 67999999998
Q ss_pred -------CCCC-ceeEEEEEEecc--cccCCceeeeEEEccCCCCCcCCCCCeEEEEEEe
Q 003523 86 -------NPVG-AILIGRAYVPVE--DVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQF 135 (813)
Q Consensus 86 -------d~~g-~~~IG~~~ipl~--~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f 135 (813)
|..+ +++||++.|.++ .+........-+.| .+-+|.++|+|
T Consensus 68 ~~~~~~~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~---------~~~~~~~s~~~ 118 (118)
T cd08686 68 CYSKVKLDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVISM---------NGITVNLSIKF 118 (118)
T ss_pred ccccccccccCcccEEEEEEEEECHHHhccCCeeEEEEEe---------cCEEEEEEEeC
Confidence 4555 689999988874 33332222333333 12466777765
No 82
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.64 E-value=2.9e-15 Score=141.91 Aligned_cols=119 Identities=16% Similarity=0.337 Sum_probs=96.0
Q ss_pred EEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECC-----eeeeeeeeccCCCCCCeeeeEEEEEecCCc-ceEEEEE
Q 003523 9 ILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDK-----ARMARTRMITERTSRPHWNQSFRIYCAHRV-SHVVFTI 82 (813)
Q Consensus 9 ~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~-----~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~-~~l~~~V 82 (813)
.|+|+|++|++|++... .....+||||+|++.+ ....||+++.+++.||+|||+|.|++.... +.|.|+|
T Consensus 3 ~l~v~vi~a~~L~~~~~----~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V 78 (128)
T cd00275 3 TLTIKIISGQQLPKPKG----DKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVV 78 (128)
T ss_pred EEEEEEEeeecCCCCCC----CCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEE
Confidence 58999999999987521 0123489999999942 334699998873459999999999987544 6799999
Q ss_pred EeCCCCCceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEEEEEe
Q 003523 83 KNDNPVGAILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQF 135 (813)
Q Consensus 83 ~D~d~~g~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f 135 (813)
+|++..++++||.+.++++++..|. .|++|.+..|++. ..|.|.+++++
T Consensus 79 ~d~~~~~~~~iG~~~~~l~~l~~g~---~~~~l~~~~~~~~-~~~~l~v~~~~ 127 (128)
T cd00275 79 YDEDSGDDDFLGQACLPLDSLRQGY---RHVPLLDSKGEPL-ELSTLFVHIDI 127 (128)
T ss_pred EeCCCCCCcEeEEEEEEhHHhcCce---EEEEecCCCCCCC-cceeEEEEEEE
Confidence 9999887789999999999998775 6899998887743 56899998876
No 83
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.64 E-value=1.5e-15 Score=142.96 Aligned_cols=104 Identities=13% Similarity=0.199 Sum_probs=87.3
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEEC--CeeeeeeeeccCCCCCCeeeeEEEEEecCC---cceEEEE
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLD--KARMARTRMITERTSRPHWNQSFRIYCAHR---VSHVVFT 81 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~--~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~---~~~l~~~ 81 (813)
.+.|.|+|++|++|+++.. ....+||||+|++. +...+||+++++ +.||+|||+|.|.+... ...|.|.
T Consensus 13 ~~~L~V~v~~a~~L~~~~~-----~~~~~dpyV~v~l~~~~~~~~~T~v~~~-~~~P~wne~f~f~i~~~~l~~~~l~i~ 86 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTK-----DVAHCDPFVKVCLLPDERRSLQSKVKRK-TQNPNFDETFVFQVSFKELQRRTLRLS 86 (123)
T ss_pred CCEEEEEEEEecCCCCccC-----CCCCCCcEEEEEEeeCCCCceEeeeEcC-CCCCccceEEEEEcCHHHhcccEEEEE
Confidence 5789999999999997510 12348999999993 345679999999 99999999999997643 3579999
Q ss_pred EEeCCCCC-ceeEEEEEEecccccCCceeeeEEEcc
Q 003523 82 IKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIR 116 (813)
Q Consensus 82 V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 116 (813)
|+|.+..+ +++||++.|+++++......+.|++|.
T Consensus 87 v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 87 VYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred EEECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 99999887 689999999999999877788999984
No 84
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.63 E-value=1.3e-15 Score=147.67 Aligned_cols=93 Identities=17% Similarity=0.369 Sum_probs=82.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCcceEEEEEEeCCC
Q 003523 8 GILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRVSHVVFTIKNDNP 87 (813)
Q Consensus 8 G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~~V~D~d~ 87 (813)
|.|+|+|++|++|+.. +..++||||+|.+++++ .||+++++ +.||+|||+|.|.+.+....|.|+|+|+|.
T Consensus 2 G~L~V~Vi~a~nL~~~-------d~~~sDPYV~v~~g~~~-~kT~vvk~-t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~ 72 (145)
T cd04038 2 GLLKVRVVRGTNLAVR-------DFTSSDPYVVLTLGNQK-VKTRVIKK-NLNPVWNEELTLSVPNPMAPLKLEVFDKDT 72 (145)
T ss_pred eEEEEEEEeeECCCCC-------CCCCcCcEEEEEECCEE-EEeeeEcC-CCCCeecccEEEEecCCCCEEEEEEEECCC
Confidence 8999999999999864 23459999999998875 59999999 999999999999998888899999999998
Q ss_pred CC-ceeEEEEEEecccccCCcee
Q 003523 88 VG-AILIGRAYVPVEDVAKEFVI 109 (813)
Q Consensus 88 ~g-~~~IG~~~ipl~~l~~g~~~ 109 (813)
++ +++||.+.+++.++......
T Consensus 73 ~~~dd~iG~a~i~l~~l~~~~~~ 95 (145)
T cd04038 73 FSKDDSMGEAEIDLEPLVEAAKL 95 (145)
T ss_pred CCCCCEEEEEEEEHHHhhhhhhh
Confidence 87 68999999999998875433
No 85
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.63 E-value=4.4e-16 Score=148.90 Aligned_cols=108 Identities=18% Similarity=0.117 Sum_probs=88.8
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECC----eeeeeeeeccCCCCCCeeeeEEEEEecCC---cceEE
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDK----ARMARTRMITERTSRPHWNQSFRIYCAHR---VSHVV 79 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~t~nP~WNE~F~~~v~~~---~~~l~ 79 (813)
.|.|.|+|++|++|++++ ..+.+||||+|.+.+ ....||+++++ +.||+|||+|.|++... ...|.
T Consensus 12 ~~~L~V~Vi~a~~L~~~d------~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~l~~~~l~ 84 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMD------ANGYSDPFVKLYLKPDAGKKSKHKTQVKKK-TLNPEFNEEFFYDIKHSDLAKKTLE 84 (133)
T ss_pred CCEEEEEEEEEcCCCCcC------CCCCCCcEEEEEEEcCCCccCCceeeeEec-cCCCCcccEEEEECCHHHhCCCEEE
Confidence 489999999999999752 223489999999953 34569999998 99999999999998653 35799
Q ss_pred EEEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEccCCCCCcC
Q 003523 80 FTIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNI 123 (813)
Q Consensus 80 ~~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~ 123 (813)
|+|+|+|..+ +++||.+.|++.. .|+..+.|++++...++++
T Consensus 85 ~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~~~ 127 (133)
T cd08384 85 ITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDKKI 127 (133)
T ss_pred EEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCCCCh
Confidence 9999999877 6899999999975 5666789999987665543
No 86
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.63 E-value=6.2e-16 Score=148.57 Aligned_cols=108 Identities=19% Similarity=0.140 Sum_probs=88.3
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEEC--Cee--eeeeeeccCCCCCCeeeeEEEEEecC---CcceEE
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLD--KAR--MARTRMITERTSRPHWNQSFRIYCAH---RVSHVV 79 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~--~~~--~~rT~vi~~~t~nP~WNE~F~~~v~~---~~~~l~ 79 (813)
.+.|.|+|++|++|+.++ ..+.+||||+|++. +++ ..||+|+++ +.||+|||+|.|.+.. ....|.
T Consensus 14 ~~~L~V~vi~a~~L~~~d------~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~-t~nP~w~e~F~f~v~~~~~~~~~l~ 86 (136)
T cd08404 14 TNRLTVVVLKARHLPKMD------VSGLADPYVKVNLYYGKKRISKKKTHVKKC-TLNPVFNESFVFDIPSEELEDISVE 86 (136)
T ss_pred CCeEEEEEEEeeCCCccc------cCCCCCeEEEEEEEcCCceeeeEcCccccC-CCCCccCceEEEECCHHHhCCCEEE
Confidence 578999999999999752 23348999999994 332 458999998 9999999999999864 235789
Q ss_pred EEEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEccCCCCCcC
Q 003523 80 FTIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNI 123 (813)
Q Consensus 80 ~~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~ 123 (813)
|+|+|+|.++ +++||++.|++.. .+.....|++|.+..|+++
T Consensus 87 ~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~~i 129 (136)
T cd08404 87 FLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRRQI 129 (136)
T ss_pred EEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCCee
Confidence 9999999987 6899999999988 4666789999987666654
No 87
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.63 E-value=4.5e-16 Score=149.24 Aligned_cols=108 Identities=12% Similarity=0.090 Sum_probs=87.2
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEEC--Cee--eeeeeeccCCCCCCeeeeEEEEEecCC---cceEE
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLD--KAR--MARTRMITERTSRPHWNQSFRIYCAHR---VSHVV 79 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~--~~~--~~rT~vi~~~t~nP~WNE~F~~~v~~~---~~~l~ 79 (813)
.+.|.|+|++|+||+.. +..+.+||||+|+|- +.+ ..||+|+++ ++||+|||+|.|.++.. ...|.
T Consensus 14 ~~~L~V~Vi~A~nL~~~------~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~-t~nP~~nE~f~F~v~~~~l~~~~l~ 86 (136)
T cd08406 14 AERLTVVVVKARNLVWD------NGKTTADPFVKVYLLQDGRKISKKKTSVKRD-DTNPIFNEAMIFSVPAIVLQDLSLR 86 (136)
T ss_pred CCEEEEEEEEeeCCCCc------cCCCCCCeEEEEEEEeCCccccccCCccccC-CCCCeeceeEEEECCHHHhCCcEEE
Confidence 47899999999999974 123448999999993 222 348999998 99999999999998652 36799
Q ss_pred EEEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEccCCCCCcC
Q 003523 80 FTIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNI 123 (813)
Q Consensus 80 ~~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~ 123 (813)
|+|+|+|.++ +++||++.|+.. ..|+..++|.+++...++++
T Consensus 87 ~~V~~~d~~~~~~~iG~v~lg~~--~~g~~~~hW~~ml~~~~~~v 129 (136)
T cd08406 87 VTVAESTEDGKTPNVGHVIIGPA--ASGMGLSHWNQMLASLRKPV 129 (136)
T ss_pred EEEEeCCCCCCCCeeEEEEECCC--CCChhHHHHHHHHHCCCCee
Confidence 9999999877 689999999876 35777889999987656543
No 88
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.62 E-value=7.9e-16 Score=145.94 Aligned_cols=109 Identities=9% Similarity=0.233 Sum_probs=85.5
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEEC--C--eeeeeeeeccCCCC-CCeeeeEEEEEecCCc--ceEE
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLD--K--ARMARTRMITERTS-RPHWNQSFRIYCAHRV--SHVV 79 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~--~--~~~~rT~vi~~~t~-nP~WNE~F~~~v~~~~--~~l~ 79 (813)
.|.|.|+|++|+||+++ .+..++||||+|+|- + ....||+++++ |+ ||+|||+|.|+++... -.|.
T Consensus 13 ~~rLtV~VikarnL~~~------~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~-t~~~P~fNEsF~Fdv~~~~~~v~l~ 85 (135)
T cd08692 13 NSRIQLQILEAQNLPSS------STPLTLSFFVKVGMFSTGGLLYKKKTRLVKS-SNGQVKWGETMIFPVTQQEHGIQFL 85 (135)
T ss_pred CCeEEEEEEEccCCCcc------cCCCCCCcEEEEEEEECCCcceeecCccEEC-CCCCceecceEEEeCCchhheeEEE
Confidence 48899999999999974 234457999999992 2 33568999998 85 6999999999987643 3577
Q ss_pred EEEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEccCCCCCcC
Q 003523 80 FTIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNI 123 (813)
Q Consensus 80 ~~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~ 123 (813)
|+|+|++.++ +++||++.++.+.. .+...++|.+++..-++++
T Consensus 86 v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr~~i 129 (135)
T cd08692 86 IKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPEKVV 129 (135)
T ss_pred EEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHhCCCCee
Confidence 7888888776 68999999999763 3455789999987555543
No 89
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.62 E-value=1.7e-15 Score=149.80 Aligned_cols=104 Identities=13% Similarity=0.100 Sum_probs=85.1
Q ss_pred cceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEEC----CeeeeeeeeccCCCCCCeeeeEEEEEecCC----cce
Q 003523 6 LHGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLD----KARMARTRMITERTSRPHWNQSFRIYCAHR----VSH 77 (813)
Q Consensus 6 l~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~----~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~----~~~ 77 (813)
..|.|.|+|++|+||++.+ ....+||||+|++. +..+.||+|+++ +.||+|||+|.|++... ...
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d------~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~-t~nP~WnE~f~f~~~~~~~l~~~~ 97 (162)
T cd04020 25 STGELHVWVKEAKNLPALK------SGGTSDSFVKCYLLPDKSKKSKQKTPVVKK-SVNPVWNHTFVYDGVSPEDLSQAC 97 (162)
T ss_pred CCceEEEEEEeeeCCCCCC------CCCCCCCEEEEEEEcCCCCCcceeCCccCC-CCCCCCCCEEEEecCCHHHhCCCE
Confidence 5699999999999999751 23348999999983 344679999999 99999999999986432 247
Q ss_pred EEEEEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEcc
Q 003523 78 VVFTIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIR 116 (813)
Q Consensus 78 l~~~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 116 (813)
|.|+|+|+|.++ +++||++.|++.++..-...+.|+++.
T Consensus 98 L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 98 LELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred EEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCC
Confidence 999999999988 789999999999987644567788774
No 90
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.62 E-value=2.5e-15 Score=142.10 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=83.9
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEE--CCeeeeeeeeccCCCCCCeeeeEEEEE-ecC---CcceEEE
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDL--DKARMARTRMITERTSRPHWNQSFRIY-CAH---RVSHVVF 80 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l--~~~~~~rT~vi~~~t~nP~WNE~F~~~-v~~---~~~~l~~ 80 (813)
.+.|.|+|++|+||++++ ..+.+||||++.+ .+....||+++++ .||+|||+|.|+ +.. ....|.|
T Consensus 15 ~~~L~V~Vi~a~nL~~~~------~~~~~d~yVk~~llp~~~~~~kTkv~~~--~nP~fnE~F~f~~i~~~~l~~~~L~~ 86 (124)
T cd08389 15 ARKLTVTVIRAQDIPTKD------RGGASSWQVHLVLLPSKKQRAKTKVQRG--PNPVFNETFTFSRVEPEELNNMALRF 86 (124)
T ss_pred CCEEEEEEEEecCCCchh------cCCCCCcEEEEEEccCCcceeecccccC--CCCcccCEEEECCCCHHHhccCEEEE
Confidence 478999999999999752 2233899999888 3344568998753 899999999998 543 2367999
Q ss_pred EEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEcc
Q 003523 81 TIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIR 116 (813)
Q Consensus 81 ~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 116 (813)
+|+|++.++ +++||++.||++++..+.....|++|.
T Consensus 87 ~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 87 RLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred EEEECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 999999887 689999999999998888889999995
No 91
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.62 E-value=2.2e-15 Score=142.51 Aligned_cols=89 Identities=20% Similarity=0.228 Sum_probs=76.0
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecC--CcceEEEEEEe
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAH--RVSHVVFTIKN 84 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~--~~~~l~~~V~D 84 (813)
-|.|+|+|++|++|+.. ...++||||+|+++++ +.||+++++ +.||+|||+|.|.... ..+.|+|+|+|
T Consensus 27 ~~~L~V~V~~A~~L~~d-------~~g~~DPYVkV~~~~~-~~kT~vi~~-t~nPvWNE~F~f~~~~~~~~~~L~v~V~D 97 (127)
T cd04032 27 LATLTVTVLRATGLWGD-------YFTSTDGYVKVFFGGQ-EKRTEVIWN-NNNPRWNATFDFGSVELSPGGKLRFEVWD 97 (127)
T ss_pred cEEEEEEEEECCCCCcC-------cCCCCCeEEEEEECCc-cccCceecC-CCCCcCCCEEEEecccCCCCCEEEEEEEe
Confidence 38999999999999741 2334899999999887 569999999 9999999999997433 35789999999
Q ss_pred CCCCC-ceeEEEEEEeccccc
Q 003523 85 DNPVG-AILIGRAYVPVEDVA 104 (813)
Q Consensus 85 ~d~~g-~~~IG~~~ipl~~l~ 104 (813)
+|.++ +++||++.+++....
T Consensus 98 ~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 98 RDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCCCCCCeeEEEEEEecCCc
Confidence 99986 789999999998554
No 92
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.62 E-value=5.5e-15 Score=139.94 Aligned_cols=117 Identities=18% Similarity=0.333 Sum_probs=91.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCcceEEEEEEeCCC
Q 003523 8 GILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRVSHVVFTIKNDNP 87 (813)
Q Consensus 8 G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~~V~D~d~ 87 (813)
-.|.|+|++|+.++.. ....+||||+|+++++..+||+++++ +.||+|||+|.|.+. ..+.|.|+|+|++.
T Consensus 2 ~~L~V~i~~a~l~~~~-------~~~~~dPyv~v~~~~~~~~kT~v~~~-t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~ 72 (125)
T cd04021 2 SQLQITVESAKLKSNS-------KSFKPDPYVEVTVDGQPPKKTEVSKK-TSNPKWNEHFTVLVT-PQSTLEFKVWSHHT 72 (125)
T ss_pred ceEEEEEEeeECCCCC-------cCCCCCeEEEEEECCcccEEeeeeCC-CCCCccccEEEEEeC-CCCEEEEEEEeCCC
Confidence 3699999999944432 23348999999999876789999998 999999999999985 45789999999999
Q ss_pred CC-ceeEEEEEEecccccCC---ce--eeeEEEccCCCCCcCCCCCeEEEEE
Q 003523 88 VG-AILIGRAYVPVEDVAKE---FV--IDRSFDIRDEEYKNIPGGSKIHVML 133 (813)
Q Consensus 88 ~g-~~~IG~~~ipl~~l~~g---~~--~~~w~~L~~~~gk~~~~~g~l~l~l 133 (813)
.+ +++||++.+++.++..+ .. ...|++|..++.-..+..|+|++.+
T Consensus 73 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 73 LKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred CCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 86 68999999999998853 22 3469999754410123578888765
No 93
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.61 E-value=2.9e-15 Score=144.11 Aligned_cols=101 Identities=16% Similarity=0.223 Sum_probs=86.2
Q ss_pred EEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECC---eeeeeeeeccCCCCCCeeeeEEEEEecCC------------
Q 003523 10 LIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDK---ARMARTRMITERTSRPHWNQSFRIYCAHR------------ 74 (813)
Q Consensus 10 L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~---~~~~rT~vi~~~t~nP~WNE~F~~~v~~~------------ 74 (813)
|+|+|++|++|+.+ ....+||||+|+++. ..++||+++.+ +.||+|||+|.|++...
T Consensus 1 L~V~Vi~A~~L~~~-------~~g~~dPyv~v~~~~~~~~~~~rT~vv~~-t~nP~Wne~f~f~~~~~~~~~~~~~~~~~ 72 (137)
T cd08675 1 LSVRVLECRDLALK-------SNGTCDPFARVTLNYSSKTDTKRTKVKKK-TNNPRFDEAFYFELTIGFSYEKKSFKVEE 72 (137)
T ss_pred CEEEEEEccCCCcc-------cCCCCCcEEEEEEecCCcCCeeccceeeC-CCCCCcceEEEEEcccccccccccccccc
Confidence 68999999999863 223489999999984 45579999999 99999999999998664
Q ss_pred ----cceEEEEEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEccCC
Q 003523 75 ----VSHVVFTIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIRDE 118 (813)
Q Consensus 75 ----~~~l~~~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~ 118 (813)
...|.|+|+|++.++ +++||++.|++.++..+...+.|++|...
T Consensus 73 ~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 73 EDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred ccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 357999999999885 68999999999999877778999999753
No 94
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.61 E-value=9.4e-16 Score=146.90 Aligned_cols=109 Identities=18% Similarity=0.162 Sum_probs=87.9
Q ss_pred cceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEEC--Ce--eeeeeeeccCCCCCCeeeeEEEEEecCCc---ceE
Q 003523 6 LHGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLD--KA--RMARTRMITERTSRPHWNQSFRIYCAHRV---SHV 78 (813)
Q Consensus 6 l~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~--~~--~~~rT~vi~~~t~nP~WNE~F~~~v~~~~---~~l 78 (813)
.+|.|+|+|++|++|++++ ....+||||+|++. ++ ...||+++++ +.||+|||+|.|.+.... ..|
T Consensus 12 ~~~~L~V~v~~A~~L~~~d------~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~~~~~~l 84 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMD------ITGFSDPYVKVSLMCEGRRLKKKKTSVKKN-TLNPTYNEALVFDVPPENVDNVSL 84 (134)
T ss_pred CCCEEEEEEEEeeCCCccc------cCCCCCceEEEEEEeCCcccceecCCcccC-CCCCcccceEEEECCHHHhCCCEE
Confidence 4699999999999999752 22348999999994 22 3568999888 999999999999985432 469
Q ss_pred EEEEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEccCCCCCcC
Q 003523 79 VFTIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNI 123 (813)
Q Consensus 79 ~~~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~ 123 (813)
.|+|+|++.++ +++||++.|++. ..|...+.|++++...++++
T Consensus 85 ~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~~~~~ 128 (134)
T cd08403 85 IIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANPRKPI 128 (134)
T ss_pred EEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCCCCee
Confidence 99999999988 689999999987 44555678999988777654
No 95
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.61 E-value=1.2e-15 Score=146.54 Aligned_cols=108 Identities=17% Similarity=0.215 Sum_probs=88.0
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEE--CC--eeeeeeeeccCCCCCCeeeeEEEEEecCC---cceEE
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDL--DK--ARMARTRMITERTSRPHWNQSFRIYCAHR---VSHVV 79 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l--~~--~~~~rT~vi~~~t~nP~WNE~F~~~v~~~---~~~l~ 79 (813)
.|.|.|+|++|++|++. +....+||||+|.+ ++ ....||+++++ +.||+|||+|.|.+... ...|.
T Consensus 14 ~~~L~v~vi~a~~L~~~------~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~F~f~i~~~~~~~~~l~ 86 (136)
T cd08405 14 ANRITVNIIKARNLKAM------DINGTSDPYVKVWLMYKDKRVEKKKTVIKKR-TLNPVFNESFIFNIPLERLRETTLI 86 (136)
T ss_pred CCeEEEEEEEeeCCCcc------ccCCCCCceEEEEEEeCCCccccccCcceeC-CCCCcccceEEEeCCHHHhCCCEEE
Confidence 48999999999999864 12334899999998 32 23468999998 99999999999987531 35799
Q ss_pred EEEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEccCCCCCcC
Q 003523 80 FTIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNI 123 (813)
Q Consensus 80 ~~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~ 123 (813)
|+|+|.+.++ +++||++.|++.+. |...+.|++++...++++
T Consensus 87 ~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~~~~ 129 (136)
T cd08405 87 ITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPRQPV 129 (136)
T ss_pred EEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCCCch
Confidence 9999999987 68999999999876 666789999988666654
No 96
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.61 E-value=7.5e-16 Score=147.98 Aligned_cols=109 Identities=18% Similarity=0.201 Sum_probs=88.3
Q ss_pred cceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEEC--Ce--eeeeeeeccCCCCCCeeeeEEEEEecCCc---ceE
Q 003523 6 LHGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLD--KA--RMARTRMITERTSRPHWNQSFRIYCAHRV---SHV 78 (813)
Q Consensus 6 l~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~--~~--~~~rT~vi~~~t~nP~WNE~F~~~v~~~~---~~l 78 (813)
.+|.|+|+|++|++|++++ ....+||||+|++. ++ ...||+++++ +.||+|||+|.|++.... ..|
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d------~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l~~~~l 85 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMD------VGGLSDPYVKIHLMQNGKRLKKKKTTIKKR-TLNPYYNESFSFEVPFEQIQKVHL 85 (136)
T ss_pred CCCeEEEEEEEeeCCCccc------CCCCCCCeEEEEEEECCcccceeeccceeC-CCCCcccceEEEECCHHHhCCCEE
Confidence 4699999999999998751 22348999999994 22 3458999988 999999999999986432 479
Q ss_pred EEEEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEccCCCCCcC
Q 003523 79 VFTIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNI 123 (813)
Q Consensus 79 ~~~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~ 123 (813)
.|+|+|.+.++ +++||.+.|++.. .|.+.+.|++++...++++
T Consensus 86 ~~~v~d~~~~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~~~~~~~ 129 (136)
T cd08402 86 IVTVLDYDRIGKNDPIGKVVLGCNA--TGAELRHWSDMLASPRRPI 129 (136)
T ss_pred EEEEEeCCCCCCCceeEEEEECCcc--CChHHHHHHHHHhCCCCee
Confidence 99999999987 5899999999975 4677889999987655543
No 97
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.59 E-value=6e-15 Score=140.70 Aligned_cols=106 Identities=15% Similarity=0.185 Sum_probs=88.5
Q ss_pred ccceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECC----eeeeeeeeccCCCCCCeeeeEEEEEecCC--cceE
Q 003523 5 LLHGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDK----ARMARTRMITERTSRPHWNQSFRIYCAHR--VSHV 78 (813)
Q Consensus 5 ll~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~t~nP~WNE~F~~~v~~~--~~~l 78 (813)
+..|.|.|+|++|++|+... ....+||||+|.+.+ ...+||+++++ +.||.|||+|.|++... ...|
T Consensus 10 ~~~~~l~v~i~~a~nL~~~~------~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~wne~f~~~~~~~~~~~~l 82 (131)
T cd04026 10 VKDNKLTVEVREAKNLIPMD------PNGLSDPYVKLKLIPDPKNETKQKTKTIKK-TLNPVWNETFTFDLKPADKDRRL 82 (131)
T ss_pred ECCCEEEEEEEEeeCCCCcC------CCCCCCCcEEEEEEcCCCCCceecceeecC-CCCCCccceEEEeCCchhcCCEE
Confidence 34589999999999998642 122389999999963 35679999998 99999999999998653 4689
Q ss_pred EEEEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEccCC
Q 003523 79 VFTIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIRDE 118 (813)
Q Consensus 79 ~~~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~ 118 (813)
.|+|+|++.++ +++||.+.++++++... ..+.||+|.+.
T Consensus 83 ~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 83 SIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred EEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 99999999876 68999999999999865 67899999874
No 98
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.59 E-value=2.1e-15 Score=144.08 Aligned_cols=108 Identities=18% Similarity=0.198 Sum_probs=90.0
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCe----eeeeeeeccCCCCCCeeeeEEEEEecCC---cceEE
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKA----RMARTRMITERTSRPHWNQSFRIYCAHR---VSHVV 79 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~----~~~rT~vi~~~t~nP~WNE~F~~~v~~~---~~~l~ 79 (813)
.|.|.|+|++|++|++.. ....+||||+|.+.+. ...||+++.+ +.||+|||+|.|.+... ...|.
T Consensus 13 ~~~L~V~v~~a~~L~~~~------~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~-~~~P~wne~f~f~i~~~~l~~~~l~ 85 (134)
T cd00276 13 AERLTVVVLKARNLPPSD------GKGLSDPYVKVSLLQGGKKLKKKKTSVKKG-TLNPVFNEAFSFDVPAEQLEEVSLV 85 (134)
T ss_pred CCEEEEEEEEeeCCCCcc------CCCCCCcEEEEEEEcCCeEeeeecCcceec-CCCCeeeeeEEEECCHHHhCCcEEE
Confidence 489999999999999741 2334899999999542 3569999998 99999999999998764 36899
Q ss_pred EEEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEccCCCCCcC
Q 003523 80 FTIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNI 123 (813)
Q Consensus 80 ~~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~ 123 (813)
|+|+|.+.++ +++||.+.|++.+ .|...+.|++|++..++++
T Consensus 86 ~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~~ 128 (134)
T cd00276 86 ITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKPI 128 (134)
T ss_pred EEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCce
Confidence 9999999866 6899999999998 6777899999998766653
No 99
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.57 E-value=5.4e-15 Score=187.48 Aligned_cols=119 Identities=18% Similarity=0.345 Sum_probs=102.5
Q ss_pred cceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCc--ceEEEEEE
Q 003523 6 LHGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRV--SHVVFTIK 83 (813)
Q Consensus 6 l~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~--~~l~~~V~ 83 (813)
+-|.|.|+|++|+||.. +..++||||+|.++++...||||+++ +.||+|||+|+|.+.++. +.|.|+||
T Consensus 1978 ~~G~L~V~V~~a~nl~~--------~~~~sdPyv~l~~g~~~~~kTkvvk~-~~nP~Wne~f~~~~~~p~~~~~l~iev~ 2048 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLKQ--------SMGNTNAFCKLTLGNGPPRQTKVVSH-SSSPEWKEGFTWAFDSPPKGQKLHISCK 2048 (2102)
T ss_pred CCcceEEEEeecccccc--------ccCCCCCeEEEEECCCCcccccccCC-CCCCCcccceeeeecCCCCCCceEEEEE
Confidence 45999999999999983 34559999999999775569999999 999999999998776654 77999999
Q ss_pred eCCCCCceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCe---EEEEEEeee
Q 003523 84 NDNPVGAILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSK---IHVMLQFVH 137 (813)
Q Consensus 84 D~d~~g~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~---l~l~l~f~~ 137 (813)
|+|.++++.||.+.|++.++..+...+.||+|.++ |+ +.|+ |++.++|.+
T Consensus 2049 d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L~~~-~~---k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2049 SKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLNPE-SN---KDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred ecCccCCCCCceEEEEHHHHhcCceeeeeeecCcc-cc---cCCCcceEEEEEEecC
Confidence 99999999999999999999999999999999853 22 2455 999998865
No 100
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.57 E-value=2.9e-15 Score=144.07 Aligned_cols=108 Identities=18% Similarity=0.228 Sum_probs=88.7
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECC--e--eeeeeeeccCCCCCCeeeeEEEEEecCC---cceEE
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDK--A--RMARTRMITERTSRPHWNQSFRIYCAHR---VSHVV 79 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~--~--~~~rT~vi~~~t~nP~WNE~F~~~v~~~---~~~l~ 79 (813)
.+.|.|+|++|+||++. +...+||||+|.|.. . ...||+++++ +.||+|||+|.|.+... ...|.
T Consensus 14 ~~~L~V~V~~a~nL~~~-------~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~-~~nP~fnE~F~f~i~~~~l~~~~L~ 85 (137)
T cd08409 14 LNRLTVVVLRARGLRQL-------DHAHTSVYVKVSLMIHNKVVKTKKTEVVDG-AASPSFNESFSFKVTSRQLDTASLS 85 (137)
T ss_pred CCeEEEEEEEecCCCcc-------cCCCCCeEEEEEEEECCEEeeeeecccEeC-CCCCcccceEEEECCHHHhCccEEE
Confidence 48899999999999864 234489999999853 2 2458999988 99999999999998642 25799
Q ss_pred EEEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEccCCCCCc
Q 003523 80 FTIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKN 122 (813)
Q Consensus 80 ~~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~ 122 (813)
|+|+|.+..+ +++||++.|+......|.+.++|.+++..-+++
T Consensus 86 ~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~ 129 (137)
T cd08409 86 LSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKEL 129 (137)
T ss_pred EEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCc
Confidence 9999999776 689999999987777888899999998654443
No 101
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.57 E-value=3.7e-14 Score=136.06 Aligned_cols=115 Identities=11% Similarity=0.215 Sum_probs=88.8
Q ss_pred EEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECC--e----------eeeeeeeccCCCCCCee-eeEEEEEecCCc
Q 003523 9 ILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDK--A----------RMARTRMITERTSRPHW-NQSFRIYCAHRV 75 (813)
Q Consensus 9 ~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~--~----------~~~rT~vi~~~t~nP~W-NE~F~~~v~~~~ 75 (813)
...|++++|++|+ +. ..+.+||||+|++.. . ...||+++++ ++||+| ||+|.|.+. ..
T Consensus 2 ~~~~~~~~A~~L~-~~------~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP~W~nE~f~f~v~-~~ 72 (137)
T cd08691 2 SFSLSGLQARNLK-KG------MFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVEN-TINPVWHREQFVFVGL-PT 72 (137)
T ss_pred EEEEEEEEeCCCC-Cc------cCCCCCceEEEEEECCCcccccccccccceeeeeeEcC-CCCCceEceEEEEEcC-CC
Confidence 3689999999998 31 223499999999943 2 2469999999 999999 999999985 45
Q ss_pred ceEEEEEEeCCCCC----ceeEEEEEEecccccCC---ceeeeEEEccCCCCCcCCCCCeEEEEE
Q 003523 76 SHVVFTIKNDNPVG----AILIGRAYVPVEDVAKE---FVIDRSFDIRDEEYKNIPGGSKIHVML 133 (813)
Q Consensus 76 ~~l~~~V~D~d~~g----~~~IG~~~ipl~~l~~g---~~~~~w~~L~~~~gk~~~~~g~l~l~l 133 (813)
+.|+|+|+|++..+ +++||.+.||+.++..+ .+...|++|........ -.|+|.+++
T Consensus 73 ~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~-v~G~~~l~~ 136 (137)
T cd08691 73 DVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDH-VSGQLTFRF 136 (137)
T ss_pred CEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCc-EEEEEEEEe
Confidence 78999999976543 58999999999999865 34678999975443322 457777664
No 102
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.56 E-value=4.1e-15 Score=142.77 Aligned_cols=109 Identities=18% Similarity=0.220 Sum_probs=85.0
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEEC-C---eeeeeeeeccCCCCCCeeeeEEEEEecCC---cceEE
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLD-K---ARMARTRMITERTSRPHWNQSFRIYCAHR---VSHVV 79 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~-~---~~~~rT~vi~~~t~nP~WNE~F~~~v~~~---~~~l~ 79 (813)
.|.|+|+|++|++|+.++ ..+.+||||+|++. + ....||+++++ |.||+|||+|.|.+... ...|.
T Consensus 13 ~~~L~V~vi~a~~L~~~d------~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wnE~F~f~i~~~~l~~~~l~ 85 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTD------MSQGSDPFVKIQLVHGLKLIKTKKTSCMRG-TIDPFYNESFSFKVPQEELENVSLV 85 (135)
T ss_pred CCeEEEEEEEecCCCccc------CCCCCCeEEEEEEEcCCcccceEcCccccC-CCCCccceeEEEeCCHHHhCCCEEE
Confidence 489999999999999752 22349999999983 2 23468999998 99999999999998532 23699
Q ss_pred EEEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEccCCCCCcC
Q 003523 80 FTIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNI 123 (813)
Q Consensus 80 ~~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~ 123 (813)
|+|+|+|..+ +++||++.|...... +...+.|+.|+...++++
T Consensus 86 ~~V~d~d~~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~~~~~~ 129 (135)
T cd08410 86 FTVYGHNVKSSNDFIGRIVIGQYSSG-PSETNHWRRMLNSQRTAV 129 (135)
T ss_pred EEEEeCCCCCCCcEEEEEEEcCccCC-chHHHHHHHHHhCCCCEe
Confidence 9999999877 689999987653322 334688999998777754
No 103
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.56 E-value=3.4e-14 Score=160.76 Aligned_cols=164 Identities=18% Similarity=0.210 Sum_probs=117.5
Q ss_pred CceeeEEeeccccCcccCCCCChHHHhhhccccCCCCcchhHHHHHHHHHHHhccceEEEeeccccccccCccccccccc
Q 003523 454 ESWNVQIFRSIDGTAAADFPTDPFEAARVGLITGKDNVFDRSIQDAYINAIRRAKNFIYIENQYFIGSSYGWLSKDIRVE 533 (813)
Q Consensus 454 ~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~~~~~~~~~~ 533 (813)
..|.+|++.|++.+. +|+. .-.+..++|.++|.+||++|+|+++||++....
T Consensus 4 ~~~~~~~vesiP~~~--~~~~-----------------~~~~t~~~~~~lI~~Ak~~I~I~s~yf~~~d~~--------- 55 (424)
T PHA02820 4 DNTIAVITETIPIGM--QFDK-----------------VYLSTFNFWREILSNTTKTLDISSFYWSLSDEV--------- 55 (424)
T ss_pred cccEEEEEEecCCCC--CCCC-----------------CCCCHHHHHHHHHHhhCcEEEEEeEEEecCccc---------
Confidence 457889999998754 3331 135779999999999999999999999942100
Q ss_pred hhhhhccchHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCc
Q 003523 534 DINALQLIPKELSLKIVSKIEAGEDFRVYIVIPMWPEGVPESASVQAILGWQRRTIEMMYADVAQAIQKKGLDDAYPRDY 613 (813)
Q Consensus 534 ~~~~~n~i~~~~a~~i~~a~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~~t~~~~~~~i~~~L~~~gv~~~~~~~y 613 (813)
...++..+..+|++|++|| |+|+|+++.. +.+. . ..+.|+++|++++
T Consensus 56 ----~~~~G~~i~~aL~~aA~rG--V~VRIL~d~~--~~~~-------------~-------~~~~L~~aGv~v~----- 102 (424)
T PHA02820 56 ----GTNFGTMILNEIIQLPKRG--VRVRIAVNKS--NKPL-------------K-------DVELLQMAGVEVR----- 102 (424)
T ss_pred ----cchhHHHHHHHHHHHHHCC--CEEEEEECCC--CCch-------------h-------hHHHHHhCCCEEE-----
Confidence 0112567889999999999 9999999852 1110 1 2467889999764
Q ss_pred eEEeecCCccccccCCCCCCCCCCchHHHHHhhccceEEEeeeEEEEeceEEEEcccccCcccccCCCCcceEEeeecCC
Q 003523 614 LTFFCLGNRENIEEYNPEQSSESNSDYYKAQKARRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGARDTEIAMGAFQPR 693 (813)
Q Consensus 614 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHsK~mIVDD~~~~iGSaNin~RS~~~~~DsEi~v~i~~~~ 693 (813)
.|... .+. ....|+|+||||+++++|||+||+.||+..+ .|+++.+.+..
T Consensus 103 --~~~~~------~~~--------------------~~~~HrK~~VIDg~~~~iGS~Nid~rsl~~n--~E~gv~i~~~g 152 (424)
T PHA02820 103 --YIDIT------NIL--------------------GGVLHTKFWISDNTHIYLGSANMDWRSLTQV--KELGIAIFNNS 152 (424)
T ss_pred --EEecC------CCC--------------------cccceeeEEEECCCEEEEeCCcCChhhhhhC--CceEEEEecch
Confidence 22110 011 1279999999999999999999999999655 89988876421
Q ss_pred ccCCCCchhhhHHHHHHHHHH
Q 003523 694 HLNTTEPARGQIYGFRIALWY 714 (813)
Q Consensus 694 ~~~~~~~~~~~~~~lR~~Lw~ 714 (813)
....++.....+.|.
T Consensus 153 ------~~v~~L~~~F~~dW~ 167 (424)
T PHA02820 153 ------NLAADLTQIFEVYWY 167 (424)
T ss_pred ------HHHHHHHHHHHHHHH
Confidence 233456777788885
No 104
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.56 E-value=1.7e-14 Score=138.15 Aligned_cols=92 Identities=21% Similarity=0.303 Sum_probs=77.8
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECC------eeeeeeeeccCCCCCCeeeeEEEEEecCC-----c
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDK------ARMARTRMITERTSRPHWNQSFRIYCAHR-----V 75 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~------~~~~rT~vi~~~t~nP~WNE~F~~~v~~~-----~ 75 (813)
.+.|+|+|++|++|++.. ....+||||+|++.+ ....||+++++ |.||+|||+|.|++... .
T Consensus 15 ~~~L~V~Vi~A~~L~~~~------~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~~~~~~ 87 (133)
T cd04009 15 EQSLRVEILNARNLLPLD------SNGSSDPFVKVELLPRHLFPDVPTPKTQVKKK-TLFPLFDESFEFNVPPEQCSVEG 87 (133)
T ss_pred CCEEEEEEEEeeCCCCcC------CCCCCCCEEEEEEECCCcCccccccccccCcC-CCCCccCCEEEEEechhhcccCC
Confidence 378999999999999741 223489999999963 34679999999 99999999999998652 3
Q ss_pred ceEEEEEEeCCCCC-ceeEEEEEEecccccC
Q 003523 76 SHVVFTIKNDNPVG-AILIGRAYVPVEDVAK 105 (813)
Q Consensus 76 ~~l~~~V~D~d~~g-~~~IG~~~ipl~~l~~ 105 (813)
..|.|+|+|++.++ +++||++.|+|.++..
T Consensus 88 ~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 88 ALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred CEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 58999999999988 7899999999999884
No 105
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.54 E-value=3.7e-14 Score=134.09 Aligned_cols=88 Identities=19% Similarity=0.269 Sum_probs=75.2
Q ss_pred EEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeee-eeeeeccCCCCCCeeeeEEEEEecCC-cceEEEEEEeCCC
Q 003523 10 LIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARM-ARTRMITERTSRPHWNQSFRIYCAHR-VSHVVFTIKNDNP 87 (813)
Q Consensus 10 L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~-~rT~vi~~~t~nP~WNE~F~~~v~~~-~~~l~~~V~D~d~ 87 (813)
|+|+|++|++|++++ ....+||||+|.+++.+. .||+++++ +.||+|||+|.|++... .+.|.|+|+|+|.
T Consensus 2 lrV~Vi~a~~L~~~d------~~g~~DPYv~v~~~~~~~~~kT~~v~~-t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~ 74 (124)
T cd04037 2 VRVYVVRARNLQPKD------PNGKSDPYLKIKLGKKKINDRDNYIPN-TLNPVFGKMFELEATLPGNSILKISVMDYDL 74 (124)
T ss_pred EEEEEEECcCCCCCC------CCCCCCcEEEEEECCeeccceeeEEEC-CCCCccceEEEEEecCCCCCEEEEEEEECCC
Confidence 799999999999752 223499999999988653 58999998 99999999999998644 4789999999999
Q ss_pred CC-ceeEEEEEEeccccc
Q 003523 88 VG-AILIGRAYVPVEDVA 104 (813)
Q Consensus 88 ~g-~~~IG~~~ipl~~l~ 104 (813)
++ +++||++.|++++..
T Consensus 75 ~~~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 75 LGSDDLIGETVIDLEDRF 92 (124)
T ss_pred CCCCceeEEEEEeecccc
Confidence 86 689999999998765
No 106
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.54 E-value=5.3e-14 Score=132.67 Aligned_cols=102 Identities=16% Similarity=0.245 Sum_probs=82.3
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEEC----CeeeeeeeeccCCCCCCeeeeEEEEEecCC----cceE
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLD----KARMARTRMITERTSRPHWNQSFRIYCAHR----VSHV 78 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~----~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~----~~~l 78 (813)
.+.|+|+|++|++|++.. ....+||||+|.+. +..+.||+++++ +.||+|||+|.|..... ...|
T Consensus 14 ~~~L~V~v~~a~~L~~~~------~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~Wne~f~f~~~~~~~~~~~~l 86 (123)
T cd04035 14 NSALHCTIIRAKGLKAMD------ANGLSDPYVKLNLLPGASKATKLRTKTVHK-TRNPEFNETLTYYGITEEDIQRKTL 86 (123)
T ss_pred CCEEEEEEEEeeCCCCCC------CCCCCCceEEEEEecCCCCCCceeeeeecC-CCCCCccceEEEcCCCHHHhCCCEE
Confidence 378999999999998741 22348999999983 234679999998 99999999999963221 3589
Q ss_pred EEEEEeCCCCCceeEEEEEEecccccCCceeeeEEEc
Q 003523 79 VFTIKNDNPVGAILIGRAYVPVEDVAKEFVIDRSFDI 115 (813)
Q Consensus 79 ~~~V~D~d~~g~~~IG~~~ipl~~l~~g~~~~~w~~L 115 (813)
.|+|+|.+.+++++||.+.+++.+|..++..+.|+.|
T Consensus 87 ~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~ 123 (123)
T cd04035 87 RLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNICL 123 (123)
T ss_pred EEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeeccC
Confidence 9999999888778999999999999988766666543
No 107
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.54 E-value=9.1e-15 Score=140.74 Aligned_cols=109 Identities=13% Similarity=0.175 Sum_probs=86.1
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEEC---Ce--eeeeeeeccCCCCCCeeeeEEEEEecCC---cceE
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLD---KA--RMARTRMITERTSRPHWNQSFRIYCAHR---VSHV 78 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~---~~--~~~rT~vi~~~t~nP~WNE~F~~~v~~~---~~~l 78 (813)
.|.|.|+|++|+||+++ +..+++||||+|+|- +. ...||+++++ +.||+|||+|.|++... ...|
T Consensus 14 ~~~L~V~VikarnL~~~------~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~-t~nPvfnEtF~f~i~~~~l~~~~L 86 (138)
T cd08408 14 TGRLSVEVIKGSNFKNL------AMNKAPDTYVKLTLLNSDGQEISKSKTSIRRG-QPDPEFKETFVFQVALFQLSEVTL 86 (138)
T ss_pred CCeEEEEEEEecCCCcc------ccCCCCCeeEEEEEEeCCCcceeeccceeecC-CCCCcEeeeEEEECCHHHhCccEE
Confidence 58999999999999974 223348999999993 22 2359999998 99999999999998753 3589
Q ss_pred EEEEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEccCCCCCcC
Q 003523 79 VFTIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNI 123 (813)
Q Consensus 79 ~~~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~ 123 (813)
.|+|+|.+.++ +++||++.|++.... ..+.++|+.++...++++
T Consensus 87 ~~~V~~~~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l~~~~~~v 131 (138)
T cd08408 87 MFSVYNKRKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMKESKGQQV 131 (138)
T ss_pred EEEEEECCCCCCCcEEEEEEECCcCCC-chHHHHHHHHHhCCCCEE
Confidence 99999999876 689999999987432 234678999987655543
No 108
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.53 E-value=3.5e-14 Score=133.35 Aligned_cols=98 Identities=11% Similarity=0.201 Sum_probs=81.2
Q ss_pred EEEEeecCCCCCCCCCccCcccCCcEEEEEECCee------eeeeeeccCCCCCCeeeeEEEEEec-CCcceEEEEEEeC
Q 003523 13 RIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKAR------MARTRMITERTSRPHWNQSFRIYCA-HRVSHVVFTIKND 85 (813)
Q Consensus 13 ~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~------~~rT~vi~~~t~nP~WNE~F~~~v~-~~~~~l~~~V~D~ 85 (813)
-.++|++|++++ ....+||||+|++.+.. ++||+++++ +.||+|||+|.|.+. ...+.|.|+|+|+
T Consensus 5 ~~i~a~~L~~~d------~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~-t~nP~wne~f~f~~~~~~~~~l~~~V~d~ 77 (120)
T cd04048 5 LSISCRNLLDKD------VLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKN-NLNPDFVTTFTVDYYFEEVQKLRFEVYDV 77 (120)
T ss_pred EEEEccCCCCCC------CCCCCCcEEEEEEEcCCCCceEEeccEeEeCC-CCCCCceEEEEEEEEeEeeeEEEEEEEEe
Confidence 458999999752 22348999999997653 579999999 999999999999854 3457899999999
Q ss_pred CC----CC-ceeEEEEEEecccccCCceeeeEEEccC
Q 003523 86 NP----VG-AILIGRAYVPVEDVAKEFVIDRSFDIRD 117 (813)
Q Consensus 86 d~----~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~ 117 (813)
|. .+ +++||++.+++.+|..+.....|++|..
T Consensus 78 d~~~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 78 DSKSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred cCCcCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 96 55 6899999999999998877778999944
No 109
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.52 E-value=1.6e-13 Score=137.28 Aligned_cols=145 Identities=23% Similarity=0.346 Sum_probs=109.1
Q ss_pred hhhHHHHHHHHHhcccEEEEEEeccCCceeEecCCCCCCCCCCchhhhhhHHHHHHHHHHHHHcCCeEEEEEecCCCCcc
Q 003523 198 HRCWEDIFDAIASAEHFIYMTGWSMYAPITLLRDPRRIKPKGNITAEEMLKTTLGDLLKKKADEGVKVLLLIWDDRTSVD 277 (813)
Q Consensus 198 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~g~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~ 277 (813)
.++++.++++|.+|+++|+|++|.|++.. . . . .. .|.++|++|+++||+|+||+ +......
T Consensus 20 ~~~~~~i~~~I~~A~~~I~i~~~~~~~~~----~-~----~-~~--------~l~~~L~~a~~rGv~V~il~-~~~~~~~ 80 (176)
T cd00138 20 RSDLDALLEAISNAKKSIYIASFYLSPLI----T-E----Y-GP--------VILDALLAAARRGVKVRILV-DEWSNTD 80 (176)
T ss_pred chHHHHHHHHHHhhheEEEEEEeEecccc----c-c----c-ch--------HHHHHHHHHHHCCCEEEEEE-cccccCC
Confidence 46789999999999999999998776421 0 0 1 12 89999999999999999998 4432221
Q ss_pred cccccCcCCCCcHHHHHHHhcC---CCEEEEcCCCCCccccccccccccccccccceEEEcCCCCCCCCCcceeEEEEcc
Q 003523 278 ILKEDGLMGTHDEETADYFRKT---KVRCVLCPRTSEIFTNIRGYQTSSIFTHHQKTVVVDSEVPGGGTQKRRVVSFVGG 354 (813)
Q Consensus 278 ~~~~~g~~~t~~~~~~~~l~~~---gV~~~~~~~~p~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~~vafvGG 354 (813)
. .........|... ++++...+.... ...++|+|++|||++ ++++||
T Consensus 81 ~--------~~~~~~~~~l~~~~~~~i~~~~~~~~~~-----------~~~~~H~K~~iiD~~-----------~~~vGS 130 (176)
T cd00138 81 L--------KISSAYLDSLRALLDIGVRVFLIRTDKT-----------YGGVLHTKLVIVDDE-----------TAYIGS 130 (176)
T ss_pred c--------hHHHHHHHHHHHhhcCceEEEEEcCCcc-----------cccceeeeEEEEcCC-----------EEEEEC
Confidence 0 0112445566654 788766542110 246999999999999 999999
Q ss_pred ccCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCccccceeeeCh--HHHHHHHHHHHHHhhc
Q 003523 355 IDLCDGRYDTQEHSLFRTLKTIHRDDFHQPNFPGSSIEKGGPREPWHDIHCKLEGP--VAWDVLYNFEQRWTKQ 426 (813)
Q Consensus 355 ~nl~~~r~Dt~~H~~~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhD~~~~i~Gp--aa~dl~~~F~~rW~~~ 426 (813)
.|+...++ ..++|..+.+++| +|.++.+.|.+.|+..
T Consensus 131 ~N~~~~~~-----------------------------------~~~~e~~~~~~~~~~~~~~~~~~f~~~w~~~ 169 (176)
T cd00138 131 ANLDGRSL-----------------------------------TLNSEVGVVIYDPASLAADLKASLERDWNST 169 (176)
T ss_pred CcCChhhh-----------------------------------hhhcceEEEEeChHHHHHHHHHHHHHHHhcC
Confidence 99998654 2467999999999 7999999999999864
No 110
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=9.2e-14 Score=156.94 Aligned_cols=127 Identities=17% Similarity=0.168 Sum_probs=104.7
Q ss_pred cceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEEC--CeeeeeeeeccCCCCCCeeeeEEEEEecCC---cceEEE
Q 003523 6 LHGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLD--KARMARTRMITERTSRPHWNQSFRIYCAHR---VSHVVF 80 (813)
Q Consensus 6 l~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~--~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~---~~~l~~ 80 (813)
-+..|.|+|++|++|+.+ +..+++||||+++|- +....+|+|.++ |+||+|||+|.|.+++. ...|.|
T Consensus 165 ~~~~L~V~V~qa~~Lp~~------d~~g~sdpyVK~~llPdk~~k~kT~v~r~-tlnP~fnEtf~f~v~~~~l~~~~L~l 237 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAK------DRGGTSDPYVKVYLLPDKKGKFKTRVHRK-TLNPVFNETFRFEVPYEELSNRVLHL 237 (421)
T ss_pred cCCEEEEEEEEecCCCcc------cCCCCCCCeeEEEEcCCCCCcceeeeeec-CcCCccccceEeecCHHHhccCEEEE
Confidence 467899999999999986 223359999999994 334569999999 99999999999998754 478999
Q ss_pred EEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEEEEEeeecc
Q 003523 81 TIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQFVHVV 139 (813)
Q Consensus 81 ~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f~~~~ 139 (813)
+|+|.|.++ +++||++.+|+..+........|.+|........+..|+|.+.+.|.|..
T Consensus 238 ~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~ 297 (421)
T KOG1028|consen 238 SVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTA 297 (421)
T ss_pred EEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCC
Confidence 999999998 68999999999888776667889999875433333448999999999963
No 111
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.48 E-value=1.3e-14 Score=155.12 Aligned_cols=102 Identities=17% Similarity=0.265 Sum_probs=86.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCccCccc-CCcEEEEEEC----CeeeeeeeeccCCCCCCeeeeEEEEEecCC--cceEEE
Q 003523 8 GILIVRIYGIDKLHTGCGFGSCEQIVG-TALYATVDLD----KARMARTRMITERTSRPHWNQSFRIYCAHR--VSHVVF 80 (813)
Q Consensus 8 G~L~V~IieA~~L~~~~~~~~~~~~~~-sDPYv~v~l~----~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~--~~~l~~ 80 (813)
..|+|+|.||+||.++ +-+| |||||++.|- +....|||+++. ++||+|||+|+|.+... ...|.|
T Consensus 180 ~~l~v~i~ea~NLiPM-------DpNGlSDPYvk~kliPD~~~~sKqKTkTik~-~LNP~wNEtftf~Lkp~DkdrRlsi 251 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPM-------DPNGLSDPYVKLKLIPDPKNESKQKTKTIKA-TLNPVWNETFTFKLKPSDKDRRLSI 251 (683)
T ss_pred ceEEEEehhhcccccc-------CCCCCCCcceeEEeccCCcchhhhhhhhhhh-hcCccccceeEEecccccccceeEE
Confidence 4699999999999986 3444 9999999993 345569999999 99999999999998643 367999
Q ss_pred EEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEccCC
Q 003523 81 TIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIRDE 118 (813)
Q Consensus 81 ~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~ 118 (813)
.|+|||..+ +||+|..++.+++|.. ..+++||.|++.
T Consensus 252 EvWDWDrTsRNDFMGslSFgisEl~K-~p~~GWyKlLsq 289 (683)
T KOG0696|consen 252 EVWDWDRTSRNDFMGSLSFGISELQK-APVDGWYKLLSQ 289 (683)
T ss_pred EEecccccccccccceecccHHHHhh-cchhhHHHHhhh
Confidence 999999987 6999999999999985 448899999873
No 112
>PRK12452 cardiolipin synthetase; Reviewed
Probab=99.45 E-value=4.1e-13 Score=155.56 Aligned_cols=154 Identities=15% Similarity=0.172 Sum_probs=116.8
Q ss_pred CcEEEEeeeccCCCCCCCCcccCCCCcccchhhHHHHHHHHHhcccEEEEEEeccCCceeEecCCCCCCCCCCchhhhhh
Q 003523 168 GCKVTLYQDAHVLDDFKPKIPLSNGEYYESHRCWEDIFDAIASAEHFIYMTGWSMYAPITLLRDPRRIKPKGNITAEEML 247 (813)
Q Consensus 168 gn~v~l~~d~~~~~~~~p~~~~~~g~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~g~~~~~~~~~ 247 (813)
.+.++++.+| +......+++.++++|.+||++|+|++..|-| + .
T Consensus 328 ~~~~q~~~sg---------------p~~~~~~i~~~~l~~I~~A~~~I~I~tpYf~p-------------d--~------ 371 (509)
T PRK12452 328 EGAVQIVASG---------------PSSDDKSIRNTLLAVMGSAKKSIWIATPYFIP-------------D--Q------ 371 (509)
T ss_pred CeEEEEEeCC---------------CCchhHHHHHHHHHHHHHhhhEEEEECCccCC-------------C--H------
Confidence 3478888886 22223468899999999999999999843322 1 2
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEecCCCCcccccccCcCCCCcHHHHHHHhcCCCEEEEcCCCCCcccccccccccccccc
Q 003523 248 KTTLGDLLKKKADEGVKVLLLIWDDRTSVDILKEDGLMGTHDEETADYFRKTKVRCVLCPRTSEIFTNIRGYQTSSIFTH 327 (813)
Q Consensus 248 ~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~~~~g~~~t~~~~~~~~l~~~gV~~~~~~~~p~~~~~~~~~~~~~~~~h 327 (813)
.+.++|+.||+|||+|+||+ +..+...+.. .......+.|.++||++..+. + ...
T Consensus 372 --~l~~aL~~Aa~rGV~Vrii~-p~~~D~~~~~------~a~~~~~~~L~~aGv~I~~y~--~--------------~~l 426 (509)
T PRK12452 372 --ETLTLLRLSAISGIDVRILY-PGKSDSIISD------QASQSYFTPLLKAGASIYSYK--D--------------GFM 426 (509)
T ss_pred --HHHHHHHHHHHcCCEEEEEc-CCCCChHHHH------HHHHHHHHHHHHcCCEEEEec--C--------------CCe
Confidence 78999999999999999998 8765432211 012345677888999998764 2 257
Q ss_pred ccceEEEcCCCCCCCCCcceeEEEEccccCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCccccceee
Q 003523 328 HQKTVVVDSEVPGGGTQKRRVVSFVGGIDLCDGRYDTQEHSLFRTLKTIHRDDFHQPNFPGSSIEKGGPREPWHDIHCKL 407 (813)
Q Consensus 328 HqK~vVVD~~~~~~~~~~~~~vafvGG~nl~~~r~Dt~~H~~~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhD~~~~i 407 (813)
|+|++|||++ +|+|||.|+....+ +..|.+..+..
T Consensus 427 HaK~~ivD~~-----------~a~vGS~Nld~RS~----------------------------------~~n~E~~~~i~ 461 (509)
T PRK12452 427 HAKIVLVDDK-----------IATIGTANMDVRSF----------------------------------ELNYEIISVLY 461 (509)
T ss_pred eeeEEEECCC-----------EEEEeCcccCHhHh----------------------------------hhhhhccEEEE
Confidence 9999999999 99999999976432 12466778888
Q ss_pred eChHHHHHHHHHHHHHhhcc
Q 003523 408 EGPVAWDVLYNFEQRWTKQA 427 (813)
Q Consensus 408 ~Gpaa~dl~~~F~~rW~~~~ 427 (813)
+++.|.++.+.|.++|..+.
T Consensus 462 ~~~~~~~l~~~f~~d~~~s~ 481 (509)
T PRK12452 462 ESETVHDIKRDFEDDFKHST 481 (509)
T ss_pred CHHHHHHHHHHHHHHHHhCe
Confidence 89999999999999998653
No 113
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.43 E-value=2.7e-13 Score=153.00 Aligned_cols=122 Identities=19% Similarity=0.248 Sum_probs=106.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCcceEEEEEEeCCC
Q 003523 8 GILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRVSHVVFTIKNDNP 87 (813)
Q Consensus 8 G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~~V~D~d~ 87 (813)
..|.|+|.||||||.++ -.+.+||||+|.|+...+.||.++.+ ++.|.|.|+|+|.++.....|.|.|+|.|
T Consensus 5 ~sl~vki~E~knL~~~~------~~g~~D~yC~v~lD~E~v~RT~tv~k-sL~PF~gEe~~~~iP~~F~~l~fYv~D~d- 76 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYG------PSGMRDCYCTVNLDQEEVCRTATVEK-SLCPFFGEEFYFEIPRTFRYLSFYVWDRD- 76 (800)
T ss_pred cceeEEEeecccCCCCC------CCCCcCcceEEeecchhhhhhhhhhh-hcCCccccceEEecCcceeeEEEEEeccc-
Confidence 57999999999999862 22338999999999999999999999 99999999999999988899999999999
Q ss_pred CC-ceeEEEEEEecccccCCceeeeEEEccC--CCCCcCCCCCeEEEEEEeeeccc
Q 003523 88 VG-AILIGRAYVPVEDVAKEFVIDRSFDIRD--EEYKNIPGGSKIHVMLQFVHVVN 140 (813)
Q Consensus 88 ~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~--~~gk~~~~~g~l~l~l~f~~~~~ 140 (813)
++ |+.||++.|.-++|..-...+.|+.|.. ++. +-+|+||+++++.+...
T Consensus 77 ~~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~ds---EVQG~v~l~l~~~e~~~ 129 (800)
T KOG2059|consen 77 LKRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDS---EVQGKVHLELALTEAIQ 129 (800)
T ss_pred cccccccceeeeeHHHHhhCCCCccceeccccCCCh---hhceeEEEEEEeccccC
Confidence 66 8899999999999997667889999964 332 37899999999998655
No 114
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.42 E-value=7.5e-13 Score=132.39 Aligned_cols=146 Identities=24% Similarity=0.378 Sum_probs=102.0
Q ss_pred hhHHHHHHHHHHHhccceEEEeeccccccccCccccccccchhhhhccchHHHHHHHHHHHHcCCCeEEEEEecCCCCCC
Q 003523 493 DRSIQDAYINAIRRAKNFIYIENQYFIGSSYGWLSKDIRVEDINALQLIPKELSLKIVSKIEAGEDFRVYIVIPMWPEGV 572 (813)
Q Consensus 493 ~~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~~~~~~~~~~~~~~~n~i~~~~a~~i~~a~~~g~~v~V~IvlP~~p~g~ 572 (813)
..++.+.++++|++|++.|+|+++||.+.. .....++..+|.+|+++| ++|+|++...+...
T Consensus 19 ~~~~~~~i~~~I~~A~~~I~i~~~~~~~~~----------------~~~~~~l~~~L~~a~~rG--v~V~il~~~~~~~~ 80 (176)
T cd00138 19 GRSDLDALLEAISNAKKSIYIASFYLSPLI----------------TEYGPVILDALLAAARRG--VKVRILVDEWSNTD 80 (176)
T ss_pred cchHHHHHHHHHHhhheEEEEEEeEecccc----------------cccchHHHHHHHHHHHCC--CEEEEEEcccccCC
Confidence 568899999999999999999999998521 001236788999999998 89999998755322
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCCCCCceEEeecCCccccccCCCCCCCCCCchHHHHHhhccc
Q 003523 573 PESASVQAILGWQRRTIEMMYADVAQAIQKK---GLDDAYPRDYLTFFCLGNRENIEEYNPEQSSESNSDYYKAQKARRF 649 (813)
Q Consensus 573 ~~~~~~~~i~~~~~~t~~~~~~~i~~~L~~~---gv~~~~~~~yl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (813)
.. ........|..+ |+++ +.+ .+... .
T Consensus 81 ~~-----------------~~~~~~~~l~~~~~~~i~~---------~~~---------~~~~~---------------~ 110 (176)
T cd00138 81 LK-----------------ISSAYLDSLRALLDIGVRV---------FLI---------RTDKT---------------Y 110 (176)
T ss_pred ch-----------------HHHHHHHHHHHhhcCceEE---------EEE---------cCCcc---------------c
Confidence 10 001124455544 4433 211 11000 0
Q ss_pred eEEEeeeEEEEeceEEEEcccccCcccccCCCCcceEEeeecCCccCCCCchhhhHHHHHHHHHH
Q 003523 650 MIYVHSKMMIVDDEYIIIGSANINQRSMDGARDTEIAMGAFQPRHLNTTEPARGQIYGFRIALWY 714 (813)
Q Consensus 650 ~iyvHsK~mIVDD~~~~iGSaNin~RS~~~~~DsEi~v~i~~~~~~~~~~~~~~~~~~lR~~Lw~ 714 (813)
...+|+|+||||++.+++||+||+.+|+. .+.|+++.+.+|.. ...++.....++|.
T Consensus 111 ~~~~H~K~~iiD~~~~~vGS~N~~~~~~~--~~~e~~~~~~~~~~------~~~~~~~~f~~~w~ 167 (176)
T cd00138 111 GGVLHTKLVIVDDETAYIGSANLDGRSLT--LNSEVGVVIYDPAS------LAADLKASLERDWN 167 (176)
T ss_pred ccceeeeEEEEcCCEEEEECCcCChhhhh--hhcceEEEEeChHH------HHHHHHHHHHHHHh
Confidence 13899999999999999999999999996 45999999988741 22345667788885
No 115
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=2.7e-13 Score=150.13 Aligned_cols=116 Identities=16% Similarity=0.332 Sum_probs=94.6
Q ss_pred eEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCcceEEEEEEeCCC
Q 003523 8 GILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRVSHVVFTIKNDNP 87 (813)
Q Consensus 8 G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~~V~D~d~ 87 (813)
..+++||++|++|..+ ++.+.|||||++.+++.+. |||+|.. .+||+|||.|+|.|.+..+.|.+.|+|.|.
T Consensus 295 akitltvlcaqgl~ak------dktg~sdpyvt~qv~ktkr-rtrti~~-~lnpvw~ekfhfechnstdrikvrvwded~ 366 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAK------DKTGKSDPYVTAQVGKTKR-RTRTIHQ-ELNPVWNEKFHFECHNSTDRIKVRVWDEDN 366 (1283)
T ss_pred eeeEEeeeecccceec------ccCCCCCCcEEEeecccch-hhHhhhh-ccchhhhhheeeeecCCCceeEEEEecCcc
Confidence 4589999999999876 3556699999999999875 9999998 999999999999999999999999999774
Q ss_pred C------------CceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEEEEE
Q 003523 88 V------------GAILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQ 134 (813)
Q Consensus 88 ~------------g~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~ 134 (813)
- +|||+|+..|.+..|. |+ .+.||.|.....|.. ..|.|++.|.
T Consensus 367 dlksklrqkl~resddflgqtvievrtls-ge-mdvwynlekrtdksa-vsgairlhis 422 (1283)
T KOG1011|consen 367 DLKSKLRQKLTRESDDFLGQTVIEVRTLS-GE-MDVWYNLEKRTDKSA-VSGAIRLHIS 422 (1283)
T ss_pred cHHHHHHHHhhhcccccccceeEEEEecc-cc-hhhhcchhhccchhh-ccceEEEEEE
Confidence 2 4789999999998764 43 788999976554442 3455555444
No 116
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.40 E-value=2.2e-12 Score=144.16 Aligned_cols=146 Identities=18% Similarity=0.252 Sum_probs=99.7
Q ss_pred hHHHHHHHHHhcccEEEEEEeccCCceeEecCCCCCCCCCCchhhhhhHHHHHHHHHHHH-HcCCeEEEEEecCCCCccc
Q 003523 200 CWEDIFDAIASAEHFIYMTGWSMYAPITLLRDPRRIKPKGNITAEEMLKTTLGDLLKKKA-DEGVKVLLLIWDDRTSVDI 278 (813)
Q Consensus 200 ~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~g~~~~~~~~~~~~l~~lL~~kA-~rGV~VriLvwD~~~s~~~ 278 (813)
+.++++++|.+||++|+|+++.|.|. .+++.. + ..+..|.++|++|| +|||+||||+ +..+....
T Consensus 217 ~~~~ll~~I~~Ak~~I~I~t~yf~P~---~~~d~~---~-------~~~~~i~~AL~~AAa~RGV~VRILv-~~~~~~~~ 282 (369)
T PHA03003 217 DADVVLHKIKSAKKSIDLELLSLVPV---IREDDK---T-------TYWPDIYNALIRAAINRGVKVRLLV-GSWKKNDV 282 (369)
T ss_pred CHHHHHHHHHHHhhEEEEEEeccccE---EeeCCC---C-------ccHHHHHHHHHHHHHcCCCEEEEEE-ecCCcCCc
Confidence 46899999999999999999877552 122211 0 01227899998885 9999999998 87543211
Q ss_pred ccccCcCCCCcHHHHHHHhcCCCEEEEcCCCCCccccccccccccccccccceEEEcCCCCCCCCCcceeEEEEccccCC
Q 003523 279 LKEDGLMGTHDEETADYFRKTKVRCVLCPRTSEIFTNIRGYQTSSIFTHHQKTVVVDSEVPGGGTQKRRVVSFVGGIDLC 358 (813)
Q Consensus 279 ~~~~g~~~t~~~~~~~~l~~~gV~~~~~~~~p~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~nl~ 358 (813)
......+.|++.|+++.+ + ..++ .+.+|+|++|||++ +|||||.|+.
T Consensus 283 ---------~~~~~~~~L~~~G~~~~i----~--vri~-------~~~~H~K~~VVD~~-----------~a~iGS~N~d 329 (369)
T PHA03003 283 ---------YSMASVKSLQALCVGNDL----S--VKVF-------RIPNNTKLLIVDDE-----------FAHITSANFD 329 (369)
T ss_pred ---------hhhhHHHHHHHcCCCCCc----e--Eeee-------cCCCCceEEEEcCC-----------EEEEeccccC
Confidence 013456778888865210 0 0000 11279999999999 9999999998
Q ss_pred CccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCccccceeeeChHHHHHHHHHHHHHhhc
Q 003523 359 DGRYDTQEHSLFRTLKTIHRDDFHQPNFPGSSIEKGGPREPWHDIHCKLEGPVAWDVLYNFEQRWTKQ 426 (813)
Q Consensus 359 ~~r~Dt~~H~~~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhD~~~~i~Gpaa~dl~~~F~~rW~~~ 426 (813)
..++.. ..|.++ ..++|++|.+++..|.++|+..
T Consensus 330 ~~s~~~---------------------------------~~e~~~-~~~~~~~a~~l~~~F~~dW~~~ 363 (369)
T PHA03003 330 GTHYLH---------------------------------HAFVSF-NTIDKELVKELSAIFERDWTSS 363 (369)
T ss_pred chhhcc---------------------------------CCCeEE-ecCChhHHHHHHHHHHHHhCCc
Confidence 754421 112232 2467999999999999999864
No 117
>PRK13912 nuclease NucT; Provisional
Probab=99.39 E-value=2.7e-12 Score=128.97 Aligned_cols=143 Identities=15% Similarity=0.223 Sum_probs=94.7
Q ss_pred hhHHHHHHHHHHHhccceEEEeeccccccccCccccccccchhhhhccchHHHHHHHHHHHHcCCCeEEEEEecCCCCCC
Q 003523 493 DRSIQDAYINAIRRAKNFIYIENQYFIGSSYGWLSKDIRVEDINALQLIPKELSLKIVSKIEAGEDFRVYIVIPMWPEGV 572 (813)
Q Consensus 493 ~~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~~~~~~~~~~~~~~~n~i~~~~a~~i~~a~~~g~~v~V~IvlP~~p~g~ 572 (813)
..++...++++|++|+++|+|+. |+++. ..+..+|.+|++|| |+|+|+++......
T Consensus 31 ~~~~~~~l~~~I~~Ak~sI~i~~-Y~~~~---------------------~~i~~aL~~Aa~RG--V~VrIlld~~~~~~ 86 (177)
T PRK13912 31 QKDALNKLVSLISNARSSIKIAI-YSFTH---------------------KDIAKALKSAAKRG--VKISIIYDYESNHN 86 (177)
T ss_pred hHHHHHHHHHHHHhcccEEEEEE-EEEch---------------------HHHHHHHHHHHHCC--CEEEEEEeCccccC
Confidence 34678899999999999999996 65531 26788999999999 99999999754321
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCCCCceEEeecCCccccccCCCCCCCCCCchHHHHHhhccceE
Q 003523 573 PESASVQAILGWQRRTIEMMYADVAQAIQK-KGLDDAYPRDYLTFFCLGNRENIEEYNPEQSSESNSDYYKAQKARRFMI 651 (813)
Q Consensus 573 ~~~~~~~~i~~~~~~t~~~~~~~i~~~L~~-~gv~~~~~~~yl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 651 (813)
.. . .+ ...|.+ .++++. .+..+.. .. + ....
T Consensus 87 ~~-~----------~~--------~~~l~~~~~~~~~------~~~~~~~-------~~------~----------~~~~ 118 (177)
T PRK13912 87 ND-Q----------ST--------IGYLDKYPNIKVC------LLKGLKA-------KN------G----------KYYG 118 (177)
T ss_pred cc-h----------hH--------HHHHHhCCCceEE------EecCccc-------cC------c----------cccc
Confidence 11 0 00 111221 122211 0000000 00 0 0012
Q ss_pred EEeeeEEEEeceEEEEcccccCcccccCCCCcceEEeeecCCccCCCCchhhhHHHHHHHHHHHh
Q 003523 652 YVHSKMMIVDDEYIIIGSANINQRSMDGARDTEIAMGAFQPRHLNTTEPARGQIYGFRIALWYEH 716 (813)
Q Consensus 652 yvHsK~mIVDD~~~~iGSaNin~RS~~~~~DsEi~v~i~~~~~~~~~~~~~~~~~~lR~~Lw~eh 716 (813)
++|+|+||||++++++||+||+.+|+..| .|+++.+.+|.. ..++.+...++|+.-
T Consensus 119 ~~H~K~~viD~~~~~iGS~N~t~~s~~~N--~E~~lii~d~~~-------~~~~~~~F~~~~~~s 174 (177)
T PRK13912 119 IMHQKVAIIDDKIVVLGSANWSKNAFENN--YEVLLITDDTET-------ILKAKEYFQKMLGSC 174 (177)
T ss_pred ccceeEEEEcCCEEEEeCCCCChhHhccC--CceEEEECCHHH-------HHHHHHHHHHHHHhc
Confidence 79999999999999999999999999754 999999988743 234667777777653
No 118
>PRK13912 nuclease NucT; Provisional
Probab=99.39 E-value=6.7e-12 Score=126.09 Aligned_cols=140 Identities=15% Similarity=0.233 Sum_probs=98.9
Q ss_pred hhHHHHHHHHHhcccEEEEEEeccCCceeEecCCCCCCCCCCchhhhhhHHHHHHHHHHHHHcCCeEEEEEecCCCCccc
Q 003523 199 RCWEDIFDAIASAEHFIYMTGWSMYAPITLLRDPRRIKPKGNITAEEMLKTTLGDLLKKKADEGVKVLLLIWDDRTSVDI 278 (813)
Q Consensus 199 ~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~g~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~ 278 (813)
++++.++++|++|+++|+|+.|.+.. . .+.++|.+|++|||+|+||+ |...+...
T Consensus 33 ~~~~~l~~~I~~Ak~sI~i~~Y~~~~----------------~--------~i~~aL~~Aa~RGV~VrIll-d~~~~~~~ 87 (177)
T PRK13912 33 DALNKLVSLISNARSSIKIAIYSFTH----------------K--------DIAKALKSAAKRGVKISIIY-DYESNHNN 87 (177)
T ss_pred HHHHHHHHHHHhcccEEEEEEEEEch----------------H--------HHHHHHHHHHHCCCEEEEEE-eCccccCc
Confidence 56789999999999999999775521 1 79999999999999999997 87644211
Q ss_pred ccccCcCCCCcHHHHHHHh-cCCCEEEEcCCCCCccccccccccccccccccceEEEcCCCCCCCCCcceeEEEEccccC
Q 003523 279 LKEDGLMGTHDEETADYFR-KTKVRCVLCPRTSEIFTNIRGYQTSSIFTHHQKTVVVDSEVPGGGTQKRRVVSFVGGIDL 357 (813)
Q Consensus 279 ~~~~g~~~t~~~~~~~~l~-~~gV~~~~~~~~p~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~nl 357 (813)
......++. ..++++........ . .......+|+|++|||++ ++++||.|+
T Consensus 88 ----------~~~~~~~l~~~~~~~~~~~~~~~~--~-----~~~~~~~~H~K~~viD~~-----------~~~iGS~N~ 139 (177)
T PRK13912 88 ----------DQSTIGYLDKYPNIKVCLLKGLKA--K-----NGKYYGIMHQKVAIIDDK-----------IVVLGSANW 139 (177)
T ss_pred ----------chhHHHHHHhCCCceEEEecCccc--c-----CcccccccceeEEEEcCC-----------EEEEeCCCC
Confidence 112223333 24666654431110 0 011235689999999999 999999999
Q ss_pred CCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCccccceeeeCh-HHHHHHHHHHHHHhhc
Q 003523 358 CDGRYDTQEHSLFRTLKTIHRDDFHQPNFPGSSIEKGGPREPWHDIHCKLEGP-VAWDVLYNFEQRWTKQ 426 (813)
Q Consensus 358 ~~~r~Dt~~H~~~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhD~~~~i~Gp-aa~dl~~~F~~rW~~~ 426 (813)
+...+.. -+++.+.++.| .+.++.+.|.+.|...
T Consensus 140 t~~s~~~-----------------------------------N~E~~lii~d~~~~~~~~~~F~~~~~~s 174 (177)
T PRK13912 140 SKNAFEN-----------------------------------NYEVLLITDDTETILKAKEYFQKMLGSC 174 (177)
T ss_pred ChhHhcc-----------------------------------CCceEEEECCHHHHHHHHHHHHHHHHhc
Confidence 8754310 14567778887 6789999999999865
No 119
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.38 E-value=1.8e-12 Score=119.61 Aligned_cols=88 Identities=17% Similarity=0.214 Sum_probs=71.4
Q ss_pred EEEEEeecCCCCCCCCCccCcccCCcEEEEEECCe-----eeeeeeeccCCCCCCeeeeEEEEEecCC-----cceEEEE
Q 003523 12 VRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKA-----RMARTRMITERTSRPHWNQSFRIYCAHR-----VSHVVFT 81 (813)
Q Consensus 12 V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~-----~~~rT~vi~~~t~nP~WNE~F~~~v~~~-----~~~l~~~ 81 (813)
+-+++|++|++++ ..+.+||||+|++.+. .+.||+++++ ++||+|| +|.|++.+. ...|.|+
T Consensus 4 ~~~i~a~~L~~~d------~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~-t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~ 75 (110)
T cd04047 4 ELQFSGKKLDKKD------FFGKSDPFLEISRQSEDGTWVLVYRTEVIKN-TLNPVWK-PFTIPLQKLCNGDYDRPIKIE 75 (110)
T ss_pred EEEEEeCCCCCCC------CCCCCCeeEEEEEECCCCCEEEEEeeeEecc-CCCCceE-EEEEEHHHhcCCCcCCEEEEE
Confidence 4467999999752 2234899999998543 3579999999 9999999 799986432 4689999
Q ss_pred EEeCCCCC-ceeEEEEEEecccccCCc
Q 003523 82 IKNDNPVG-AILIGRAYVPVEDVAKEF 107 (813)
Q Consensus 82 V~D~d~~g-~~~IG~~~ipl~~l~~g~ 107 (813)
|+|++.++ +++||++.+++++|..+.
T Consensus 76 V~d~d~~~~d~~iG~~~~~l~~l~~~~ 102 (110)
T cd04047 76 VYDYDSSGKHDLIGEFETTLDELLKSS 102 (110)
T ss_pred EEEeCCCCCCcEEEEEEEEHHHHhcCC
Confidence 99999987 689999999999998543
No 120
>PLN02223 phosphoinositide phospholipase C
Probab=99.37 E-value=4.8e-12 Score=143.29 Aligned_cols=123 Identities=16% Similarity=0.300 Sum_probs=95.3
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECC----eeeeeeeeccCCCCCCeeeeEEEEEecCCc-ceEEEE
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDK----ARMARTRMITERTSRPHWNQSFRIYCAHRV-SHVVFT 81 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~-~~l~~~ 81 (813)
..+|.|+|+.|++++.... .........||||+|.+.| ....||+|..| +.||+|||+|.|++..+. ..|.|.
T Consensus 408 ~~~L~V~Visgq~~~~~~~-k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nN-g~nPvWne~F~F~i~~PELAlLrf~ 485 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFK-KRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNN-EWKPTWGEEFTFPLTYPDLALISFE 485 (537)
T ss_pred ceEEEEEEEEcccccCCcc-cccCCCCCCCeEEEEEEeeccCCcceeEEEeCCC-CcCceecceeEEEEEccCceEEEEE
Confidence 4579999999999862100 0011112279999999965 23347876555 999999999999986554 679999
Q ss_pred EEeCCCCC-ceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEEEEEe
Q 003523 82 IKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQF 135 (813)
Q Consensus 82 V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f 135 (813)
|+|+|..+ +++||++.||++.|..|. ++++|.+.+|+++. ..+|.+++.|
T Consensus 486 V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~-~~~Ll~~f~~ 536 (537)
T PLN02223 486 VYDYEVSTADAFCGQTCLPVSELIEGI---RAVPLYDERGKACS-STMLLTRFKW 536 (537)
T ss_pred EEecCCCCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCC-CceEEEEEEe
Confidence 99999866 789999999999999998 78999999999884 4677777765
No 121
>PLN02952 phosphoinositide phospholipase C
Probab=99.33 E-value=1.1e-11 Score=143.35 Aligned_cols=123 Identities=15% Similarity=0.266 Sum_probs=95.7
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCccc-CCcEEEEEECC----eeeeeeeeccCCCCCCeeeeEEEEEecCC-cceEEE
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVG-TALYATVDLDK----ARMARTRMITERTSRPHWNQSFRIYCAHR-VSHVVF 80 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~-sDPYv~v~l~~----~~~~rT~vi~~~t~nP~WNE~F~~~v~~~-~~~l~~ 80 (813)
..+|.|+|+.|++|+.... ....+... .||||+|.+-+ ....||+++.+ +.||+|||+|.|++..+ ...|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~-~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~n-N~nPvWnE~F~F~i~~PELAllrf 546 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFS-HTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIED-NWYPAWNEEFSFPLTVPELALLRI 546 (599)
T ss_pred cceEEEEEEECcccCCCCc-cccCCccCCCCceEEEEEeccCCCCcceeeeeccC-CCCcccCCeeEEEEEcCCccEEEE
Confidence 4689999999999863210 00111222 59999999965 33459999998 69999999999987654 367999
Q ss_pred EEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEEEEEe
Q 003523 81 TIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQF 135 (813)
Q Consensus 81 ~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f 135 (813)
.|+|+|..+ ++++|.+.|||..|..|. +|++|.+.+|+++ +...|.+++.|
T Consensus 547 ~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l-~~a~Llv~f~~ 598 (599)
T PLN02952 547 EVREYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKL-KNVRLLMRFIF 598 (599)
T ss_pred EEEecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCC-CCEEEEEEEEe
Confidence 999999876 689999999999999998 6999999999987 34566666555
No 122
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.33 E-value=5.6e-12 Score=109.50 Aligned_cols=81 Identities=22% Similarity=0.353 Sum_probs=68.1
Q ss_pred EEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeee--eeeeeccCCCCCCeeeeEEEEEecC-CcceEEEEEEeCC
Q 003523 10 LIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARM--ARTRMITERTSRPHWNQSFRIYCAH-RVSHVVFTIKNDN 86 (813)
Q Consensus 10 L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~--~rT~vi~~~t~nP~WNE~F~~~v~~-~~~~l~~~V~D~d 86 (813)
|+|+|++|++|+... ....+||||+|.+.+... .+|+++++ +.||+|||+|.|++.. ..+.|.|.|+|++
T Consensus 1 L~v~I~~a~~L~~~~------~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~ 73 (85)
T PF00168_consen 1 LTVTIHSARNLPSKD------SNGKPDPYVRVSVNGSESTKYKTKVKKN-TSNPVWNEEFEFPLDDPDLDSLSFEVWDKD 73 (85)
T ss_dssp EEEEEEEEESSSSSS------TTSSBEEEEEEEEETTTCEEEEECCBSS-BSSEEEEEEEEEEESHGCGTEEEEEEEEET
T ss_pred CEEEEEEEECCCCcc------cCCcccccceeecceeeeeeeeeeeeec-cccceeeeeeeeeeecccccceEEEEEECC
Confidence 799999999999741 233489999999987433 79999999 9999999999999643 4467999999999
Q ss_pred CCC-ceeEEEEE
Q 003523 87 PVG-AILIGRAY 97 (813)
Q Consensus 87 ~~g-~~~IG~~~ 97 (813)
..+ +++||++.
T Consensus 74 ~~~~~~~iG~~~ 85 (85)
T PF00168_consen 74 SFGKDELIGEVK 85 (85)
T ss_dssp SSSSEEEEEEEE
T ss_pred CCCCCCEEEEEC
Confidence 998 78999974
No 123
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.32 E-value=6.5e-12 Score=144.51 Aligned_cols=123 Identities=15% Similarity=0.272 Sum_probs=102.5
Q ss_pred EEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECC----eeeeeeeeccCCCCCCeeeeEEEEEecCCc-ceEEEEEE
Q 003523 9 ILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDK----ARMARTRMITERTSRPHWNQSFRIYCAHRV-SHVVFTIK 83 (813)
Q Consensus 9 ~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~-~~l~~~V~ 83 (813)
+|.|+|+.+++++....... ....+||||.|.+.| ....||+++++|+-||.|+|+|+|++.-+. ..|.|.|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~--~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~ 694 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTK--FGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVH 694 (746)
T ss_pred eeEEEEEecCcccCCCCCCc--ccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEE
Confidence 79999999998775422111 111289999999966 345699988887999999999999987654 78999999
Q ss_pred eCCCCC-ceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEEEEEeee
Q 003523 84 NDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQFVH 137 (813)
Q Consensus 84 D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f~~ 137 (813)
|+|..+ |+|+|+..||++.|..|. +-+||.+..|+.+ ...+|.+++++.+
T Consensus 695 d~d~~~~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~~-~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 695 DYDYIGKDDFIGQTTLPVSELRQGY---RHVPLLSREGEAL-SSASLFVRIAIVE 745 (746)
T ss_pred ecCCCCcccccceeeccHHHhhCce---eeeeecCCCCccc-cceeEEEEEEEec
Confidence 999998 899999999999999998 6789999999988 6689999998864
No 124
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.32 E-value=8.2e-12 Score=148.43 Aligned_cols=135 Identities=18% Similarity=0.262 Sum_probs=108.2
Q ss_pred cceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCcceEEEEEEeC
Q 003523 6 LHGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRVSHVVFTIKND 85 (813)
Q Consensus 6 l~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~~V~D~ 85 (813)
-=|.|.|+|.+|++|...+.+ -..+.|||+++.+.+...+||+++++ +.||+|||+|++++....+.|.++|||.
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~----i~~~vDpyit~~~~~r~~gkT~v~~n-t~nPvwNEt~Yi~lns~~d~L~LslyD~ 508 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDST----INGTVDPYITVTFSDRVIGKTRVKKN-TLNPVWNETFYILLNSFTDPLNLSLYDF 508 (1227)
T ss_pred eeEEEEEEEeeccCccccccc----ccCCCCceEEEEeccccCCccceeec-cCCccccceEEEEecccCCceeEEEEec
Confidence 348999999999999864110 02238999999999999999999999 9999999999999998889999999995
Q ss_pred CCC-CceeEEEEEEecccccCCce-eeeEEEccCCCCCcCCCCCeEEEEEEeeecccCcccccccC
Q 003523 86 NPV-GAILIGRAYVPVEDVAKEFV-IDRSFDIRDEEYKNIPGGSKIHVMLQFVHVVNDNSWSRGIR 149 (813)
Q Consensus 86 d~~-g~~~IG~~~ipl~~l~~g~~-~~~w~~L~~~~gk~~~~~g~l~l~l~f~~~~~~~~w~~gi~ 149 (813)
+.+ +|+++|++.|+|..|..... .+.-+.++. +.+ ..|+|++.++|+|+.++..=..+..
T Consensus 509 n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~-~~k---~vGrL~yDl~ffp~~e~k~~~~~s~ 570 (1227)
T COG5038 509 NSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLR-NTK---NVGRLTYDLRFFPVIEDKKELKGSV 570 (1227)
T ss_pred cccCCcceeeeEEechHHhhhccccccceeeeec-cCc---cceEEEEeeeeecccCCcccccccc
Confidence 555 57899999999988876433 344566653 333 5699999999999987766555555
No 125
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.29 E-value=1e-11 Score=117.04 Aligned_cols=113 Identities=22% Similarity=0.406 Sum_probs=75.2
Q ss_pred HHHHHHhccceEEEeeccccccccCccccccccchhhhhccchHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCchhHH
Q 003523 500 YINAIRRAKNFIYIENQYFIGSSYGWLSKDIRVEDINALQLIPKELSLKIVSKIEAGEDFRVYIVIPMWPEGVPESASVQ 579 (813)
Q Consensus 500 yl~aI~~Ak~~IyIEnqYFi~~~~~~~~~~~~~~~~~~~n~i~~~~a~~i~~a~~~g~~v~V~IvlP~~p~g~~~~~~~~ 579 (813)
.+++|.+|+++|+|..+||... .+..+|..+.++| ++|+|++...........
T Consensus 1 l~~~i~~A~~~i~i~~~~~~~~----------------------~i~~~l~~~~~~g--v~v~ii~~~~~~~~~~~~--- 53 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYITDP----------------------DIIKALLDAAKRG--VKVRIIVDSNQDDSEAIN--- 53 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS-SC----------------------HHHHHHHHHHHTT---EEEEEEECGGGHHCCCS---
T ss_pred CHHHHhccCCEEEEEEEecCcH----------------------HHHHHHHHHHHCC--CeEEEEECCCccccchhh---
Confidence 3689999999999999999421 3567777888889 889999886321000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCceEEeecCCccccccCCCCCCCCCCchHHHHHhhccceEEEeeeEEE
Q 003523 580 AILGWQRRTIEMMYADVAQAIQKKGLDDAYPRDYLTFFCLGNRENIEEYNPEQSSESNSDYYKAQKARRFMIYVHSKMMI 659 (813)
Q Consensus 580 ~i~~~~~~t~~~~~~~i~~~L~~~gv~~~~~~~yl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHsK~mI 659 (813)
. .....+.+.+...|++++ + ++|+|++|
T Consensus 54 ------~----~~~~~~~~~~~~~~i~v~---------------------~---------------------~~H~K~~i 81 (126)
T PF13091_consen 54 ------L----ASLKELRELLKNAGIEVR---------------------N---------------------RLHAKFYI 81 (126)
T ss_dssp ------H----HHHHHHHHHHHHTTHCEE---------------------S----------------------B--EEEE
T ss_pred ------h----HHHHHHHhhhccceEEEe---------------------c---------------------CCCcceEE
Confidence 0 011224455577776541 1 79999999
Q ss_pred EeceEEEEcccccCcccccCCCCcceEEeeecCC
Q 003523 660 VDDEYIIIGSANINQRSMDGARDTEIAMGAFQPR 693 (813)
Q Consensus 660 VDD~~~~iGSaNin~RS~~~~~DsEi~v~i~~~~ 693 (813)
+||+++++||+||+.+|+. ++.|+++.+.++.
T Consensus 82 ~d~~~~iiGS~N~t~~~~~--~n~E~~~~~~~~~ 113 (126)
T PF13091_consen 82 IDDKVAIIGSANLTSSSFR--RNYELGVIIDDPE 113 (126)
T ss_dssp ETTTEEEEES--CSCCCSC--TSEEEEEEEECHH
T ss_pred ecCccEEEcCCCCCcchhc--CCcceEEEEECHH
Confidence 9999999999999999995 5599999998873
No 126
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.27 E-value=2.4e-11 Score=107.53 Aligned_cols=99 Identities=14% Similarity=0.260 Sum_probs=83.8
Q ss_pred EEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecC-CcceEEEEEEeCCCC
Q 003523 10 LIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAH-RVSHVVFTIKNDNPV 88 (813)
Q Consensus 10 L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~-~~~~l~~~V~D~d~~ 88 (813)
|.|.|++|++|+.. ......+|||++.+.+...++|+++.+ +.||.|||+|.|++.. ....|.|.|+|.+..
T Consensus 1 l~v~i~~~~~l~~~------~~~~~~~~~v~v~~~~~~~~~T~~~~~-~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~ 73 (102)
T cd00030 1 LRVTVIEARNLPAK------DLNGKSDPYVKVSLGGKQKFKTKVVKN-TLNPVWNETFEFPVLDPESDTLTVEVWDKDRF 73 (102)
T ss_pred CEEEEEeeeCCCCc------CCCCCCCcEEEEEeccCceEecceeCC-CCCCcccceEEEEccCCCCCEEEEEEEecCCC
Confidence 57999999999863 122348999999999855679999998 9999999999999987 568899999999887
Q ss_pred C-ceeEEEEEEeccccc-CCceeeeEEEc
Q 003523 89 G-AILIGRAYVPVEDVA-KEFVIDRSFDI 115 (813)
Q Consensus 89 g-~~~IG~~~ipl~~l~-~g~~~~~w~~L 115 (813)
+ ..+||.+.+++.++. .+.....|++|
T Consensus 74 ~~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 74 SKDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred CCCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 7 689999999999998 66667788875
No 127
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.26 E-value=3.9e-11 Score=138.50 Aligned_cols=123 Identities=13% Similarity=0.210 Sum_probs=96.9
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcc-cCCcEEEEEECC----eeeeeeeeccCCCCCCeeeeEEEEEecCC-cceEEE
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIV-GTALYATVDLDK----ARMARTRMITERTSRPHWNQSFRIYCAHR-VSHVVF 80 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~-~sDPYv~v~l~~----~~~~rT~vi~~~t~nP~WNE~F~~~v~~~-~~~l~~ 80 (813)
..+|.|+|+.+.+++...+-... +.. ..||||+|.+-+ ....||+++.| +.||+|||+|.|++.-+ ...|.|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~-~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n-~~nP~Wneef~F~l~vPELAllRf 545 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHF-DSYSPPDFFVRVGIAGAPVDEVMEKTKIEYD-TWTPIWNKEFIFPLAVPELALLRV 545 (598)
T ss_pred CcEEEEEEEEccCccCCCccccC-CCCCCCCceEEEEEEECCCCCcccceeccCC-CCCCccCCeeEEEEEcCceeEEEE
Confidence 46899999999987532100000 111 269999999954 33458998777 99999999999987654 478999
Q ss_pred EEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEEEEEe
Q 003523 81 TIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQF 135 (813)
Q Consensus 81 ~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f 135 (813)
.|+|+|..+ +++||++.||+..|..|. +.++|.+..|.++ ...+|.++++|
T Consensus 546 ~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l-~~~~Ll~~f~~ 597 (598)
T PLN02230 546 EVHEHDINEKDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKY-SSTRLLMRFEF 597 (598)
T ss_pred EEEECCCCCCCCEEEEEEcchHHhhCcc---ceEeccCCCcCCC-CCCeeEEEEEe
Confidence 999999865 789999999999999998 6889999999988 45788888776
No 128
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=99.25 E-value=1.4e-11 Score=142.48 Aligned_cols=152 Identities=19% Similarity=0.168 Sum_probs=111.0
Q ss_pred CcEEEEeeeccCCCCCCCCcccCCCCcccchhhHHHHHHHHHhcccEEEEEEeccCCceeEecCCCCCCCCCCchhhhhh
Q 003523 168 GCKVTLYQDAHVLDDFKPKIPLSNGEYYESHRCWEDIFDAIASAEHFIYMTGWSMYAPITLLRDPRRIKPKGNITAEEML 247 (813)
Q Consensus 168 gn~v~l~~d~~~~~~~~p~~~~~~g~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~g~~~~~~~~~ 247 (813)
++.++++.+| +......+.+.+.++|.+|+++|+|++- |++. . .
T Consensus 302 ~~~~qi~~sg---------------P~~~~~~~~~~~~~~I~~A~~~I~I~tp------Yfip-------~--~------ 345 (483)
T PRK01642 302 GHTVQVIASG---------------PGDPEETIHQFLLTAIYSARERLWITTP------YFVP-------D--E------ 345 (483)
T ss_pred CceEEEEeCC---------------CCChhhHHHHHHHHHHHHhccEEEEEcC------CcCC-------C--H------
Confidence 4578888775 2222345778899999999999999973 2331 1 2
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEecCCCCcccccccCcCCCCcHHHHHHHhcCCCEEEEcCCCCCcccccccccccccccc
Q 003523 248 KTTLGDLLKKKADEGVKVLLLIWDDRTSVDILKEDGLMGTHDEETADYFRKTKVRCVLCPRTSEIFTNIRGYQTSSIFTH 327 (813)
Q Consensus 248 ~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~~~~g~~~t~~~~~~~~l~~~gV~~~~~~~~p~~~~~~~~~~~~~~~~h 327 (813)
.+.++|+.||+|||+|+|++ +......+.. .......+.|.++||++..+. + ...
T Consensus 346 --~i~~aL~~Aa~rGV~Vril~-p~~~d~~~~~------~~~~~~~~~L~~~Gv~I~~y~--~--------------~~~ 400 (483)
T PRK01642 346 --DLLAALKTAALRGVDVRIII-PSKNDSLLVF------WASRAFFTELLEAGVKIYRYE--G--------------GLL 400 (483)
T ss_pred --HHHHHHHHHHHcCCEEEEEe-CCCCCcHHHH------HHHHHHHHHHHHcCCEEEEeC--C--------------Cce
Confidence 89999999999999999998 7654332211 012344566778999997664 2 247
Q ss_pred ccceEEEcCCCCCCCCCcceeEEEEccccCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCccccceee
Q 003523 328 HQKTVVVDSEVPGGGTQKRRVVSFVGGIDLCDGRYDTQEHSLFRTLKTIHRDDFHQPNFPGSSIEKGGPREPWHDIHCKL 407 (813)
Q Consensus 328 HqK~vVVD~~~~~~~~~~~~~vafvGG~nl~~~r~Dt~~H~~~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhD~~~~i 407 (813)
|.|++|||++ +++||+.|+....+. -=+++.+.+
T Consensus 401 HaK~~ivD~~-----------~~~vGS~N~d~rS~~-----------------------------------~N~E~~~~i 434 (483)
T PRK01642 401 HTKSVLVDDE-----------LALVGTVNLDMRSFW-----------------------------------LNFEITLVI 434 (483)
T ss_pred EeEEEEECCC-----------EEEeeCCcCCHhHHh-----------------------------------hhhcceEEE
Confidence 9999999999 999999998653221 114678888
Q ss_pred eCh-HHHHHHHHHHHHHhhc
Q 003523 408 EGP-VAWDVLYNFEQRWTKQ 426 (813)
Q Consensus 408 ~Gp-aa~dl~~~F~~rW~~~ 426 (813)
.+| .+.++.+.|.++|..+
T Consensus 435 ~d~~~~~~l~~~f~~d~~~s 454 (483)
T PRK01642 435 DDTGFAADLAAMQEDYFARS 454 (483)
T ss_pred ECHHHHHHHHHHHHHHHHhC
Confidence 987 6899999999999764
No 129
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.24 E-value=4.2e-11 Score=106.61 Aligned_cols=94 Identities=20% Similarity=0.347 Sum_probs=79.8
Q ss_pred EEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCe--eeeeeeeccCCCCCCeeeeEEEEEecCC-cceEEEEEEeC
Q 003523 9 ILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKA--RMARTRMITERTSRPHWNQSFRIYCAHR-VSHVVFTIKND 85 (813)
Q Consensus 9 ~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~--~~~rT~vi~~~t~nP~WNE~F~~~v~~~-~~~l~~~V~D~ 85 (813)
.|.|+|++|++|+... .....+|||++.+.+. ..++|+++.+ +.||.|||+|.|++... .+.|.|+|+|+
T Consensus 1 ~l~i~i~~~~~l~~~~------~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~~~~l~i~v~~~ 73 (101)
T smart00239 1 TLTVKIISARNLPKKD------KKGKSDPYVKVSLDGDPKEKKKTKVVKN-TLNPVWNETFEFEVPPPELAELEIEVYDK 73 (101)
T ss_pred CeEEEEEEeeCCCCCC------CCCCCCceEEEEEeCCccceEeeeEecC-CCCCcccceEEEEecCcccCEEEEEEEec
Confidence 3789999999998641 1123799999999876 5679999998 88999999999999887 78999999999
Q ss_pred CCCC-ceeEEEEEEecccccCCcee
Q 003523 86 NPVG-AILIGRAYVPVEDVAKEFVI 109 (813)
Q Consensus 86 d~~g-~~~IG~~~ipl~~l~~g~~~ 109 (813)
+..+ +.+||.+.+++.++..+...
T Consensus 74 ~~~~~~~~~G~~~~~l~~~~~~~~~ 98 (101)
T smart00239 74 DRFGRDDFIGQVTIPLSDLLLGGRH 98 (101)
T ss_pred CCccCCceeEEEEEEHHHcccCccc
Confidence 9876 68999999999998876543
No 130
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.24 E-value=6.6e-11 Score=136.46 Aligned_cols=125 Identities=17% Similarity=0.283 Sum_probs=97.1
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECC----eeeeeeeeccCCCCCCeeeeEEEEEecCC-cceEEEE
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDK----ARMARTRMITERTSRPHWNQSFRIYCAHR-VSHVVFT 81 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~t~nP~WNE~F~~~v~~~-~~~l~~~ 81 (813)
..+|+|+|+.+.+++-..+..........||||+|.+.+ ....||+++.+ +.||+|||+|.|++..+ ...|.|.
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~n-n~nP~W~e~f~F~i~~PeLAllRf~ 529 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLED-NWIPAWDEVFEFPLTVPELALLRLE 529 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCC-CCCcccCCeeEEEEEcCceeEEEEE
Confidence 468999999999854110000000111269999999964 33459999998 68999999999987654 4789999
Q ss_pred EEeCCCCC-ceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEEEEEee
Q 003523 82 IKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQFV 136 (813)
Q Consensus 82 V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f~ 136 (813)
|+|+|..+ +++||++.||++.|..|. +.++|.+.+|.++ ...+|.+++.|.
T Consensus 530 V~d~D~~~~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l-~~a~Lfv~~~~~ 581 (581)
T PLN02222 530 VHEYDMSEKDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKY-KSVKLLVKVEFV 581 (581)
T ss_pred EEECCCCCCCcEEEEEEcchhhhhCcc---ceEEccCCCcCCC-CCeeEEEEEEeC
Confidence 99999865 789999999999999998 7899999999988 457888888763
No 131
>PLN02228 Phosphoinositide phospholipase C
Probab=99.22 E-value=1.1e-10 Score=134.36 Aligned_cols=125 Identities=14% Similarity=0.246 Sum_probs=98.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECC----eeeeeeeeccCCCCCCee-eeEEEEEecCC-cceEEEE
Q 003523 8 GILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDK----ARMARTRMITERTSRPHW-NQSFRIYCAHR-VSHVVFT 81 (813)
Q Consensus 8 G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~t~nP~W-NE~F~~~v~~~-~~~l~~~ 81 (813)
.+|+|+|++|++|+-.......+.....||||+|.+.+ ....||+++.+ +.||+| ||+|.|++..+ ...|.|.
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n-~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVD-QWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCC-CCCceECCCeEEEEEEcCceeEEEEE
Confidence 47999999999984210001000111279999999954 23359999987 799999 99999997654 3789999
Q ss_pred EEeCCCCC-ceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEEEEEeee
Q 003523 82 IKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQFVH 137 (813)
Q Consensus 82 V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f~~ 137 (813)
|+|+|..+ +++||++.||++.|..|. +.++|.+..|+++ ..++|.+++.+.+
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l-~~atLfv~~~~~~ 562 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAY-KNTRLLVSFALDP 562 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCC-CCeEEEEEEEEcC
Confidence 99999765 789999999999999998 7899999999987 4579999999876
No 132
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.21 E-value=2.6e-11 Score=144.32 Aligned_cols=122 Identities=16% Similarity=0.280 Sum_probs=101.3
Q ss_pred cceEEEEEEEEeecCCCCCCCCCccCccc-CCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCc-ceEEEEEE
Q 003523 6 LHGILIVRIYGIDKLHTGCGFGSCEQIVG-TALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRV-SHVVFTIK 83 (813)
Q Consensus 6 l~G~L~V~IieA~~L~~~~~~~~~~~~~~-sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~-~~l~~~V~ 83 (813)
-.|.|+|.+..|.||++. +..+ +||||++.+++..+.||+++++ |+||+|||+|.+++.+.. +.++|.|+
T Consensus 1038 nsG~l~I~~~~~~nl~~~-------d~ng~sDpfv~~~ln~k~vyktkv~Kk-tlNPvwNEe~~i~v~~r~~D~~~i~v~ 1109 (1227)
T COG5038 1038 NSGYLTIMLRSGENLPSS-------DENGYSDPFVKLFLNEKSVYKTKVVKK-TLNPVWNEEFTIEVLNRVKDVLTINVN 1109 (1227)
T ss_pred ccCcEEEEEeccCCCccc-------ccCCCCCceEEEEecceecccccchhc-cCCCCccccceEeeeccccceEEEEEe
Confidence 369999999999999975 4556 9999999999998999999999 999999999999998654 78999999
Q ss_pred eCCCCC-ceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEEEEEeee
Q 003523 84 NDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQFVH 137 (813)
Q Consensus 84 D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f~~ 137 (813)
|+|.-. ++.||.+.|+|+.+..|...+.-++|-++. -....|.+|....|.+
T Consensus 1110 Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~ldgk~--~~~~~g~~~~~~~~r~ 1162 (1227)
T COG5038 1110 DWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKT--FIVLDGTLHPGFNFRS 1162 (1227)
T ss_pred ecccCCCccccccccccHhhcCcCCccceeeeccCcc--eEecccEeecceecch
Confidence 999977 589999999999999887766666764322 2235666666666665
No 133
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.14 E-value=3.7e-10 Score=106.38 Aligned_cols=124 Identities=19% Similarity=0.356 Sum_probs=84.2
Q ss_pred HHHHHHhcccEEEEEEeccCCceeEecCCCCCCCCCCchhhhhhHHHHHHHHHHHHHcCCeEEEEEecCCCCc-cccccc
Q 003523 204 IFDAIASAEHFIYMTGWSMYAPITLLRDPRRIKPKGNITAEEMLKTTLGDLLKKKADEGVKVLLLIWDDRTSV-DILKED 282 (813)
Q Consensus 204 l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~g~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~-~~~~~~ 282 (813)
|.++|++|+++|+|+.+.+.. . .+.++|..++++||+|+|++ +..... .....
T Consensus 1 l~~~i~~A~~~i~i~~~~~~~----------------~--------~i~~~l~~~~~~gv~v~ii~-~~~~~~~~~~~~- 54 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYITD----------------P--------DIIKALLDAAKRGVKVRIIV-DSNQDDSEAINL- 54 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS-S----------------C--------HHHHHHHHHHHTT-EEEEEE-ECGGGHHCCCSH-
T ss_pred CHHHHhccCCEEEEEEEecCc----------------H--------HHHHHHHHHHHCCCeEEEEE-CCCccccchhhh-
Confidence 578999999999999876521 2 78899999999999999998 653211 11000
Q ss_pred CcCCCCcHHHHHHHhcCCCEEEEcCCCCCccccccccccccccccccceEEEcCCCCCCCCCcceeEEEEccccCCCccc
Q 003523 283 GLMGTHDEETADYFRKTKVRCVLCPRTSEIFTNIRGYQTSSIFTHHQKTVVVDSEVPGGGTQKRRVVSFVGGIDLCDGRY 362 (813)
Q Consensus 283 g~~~t~~~~~~~~l~~~gV~~~~~~~~p~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~nl~~~r~ 362 (813)
.......+.++..|++++ .+.|.|++|||++ ++++||.|++...|
T Consensus 55 ----~~~~~~~~~~~~~~i~v~--------------------~~~H~K~~i~d~~-----------~~iiGS~N~t~~~~ 99 (126)
T PF13091_consen 55 ----ASLKELRELLKNAGIEVR--------------------NRLHAKFYIIDDK-----------VAIIGSANLTSSSF 99 (126)
T ss_dssp ----HHHHHHHHHHHHTTHCEE--------------------S-B--EEEEETTT-----------EEEEES--CSCCCS
T ss_pred ----HHHHHHHhhhccceEEEe--------------------cCCCcceEEecCc-----------cEEEcCCCCCcchh
Confidence 001233444466777654 2679999999998 99999999987644
Q ss_pred cCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCccccceeeeChH-HHHHHHHHHHHH
Q 003523 363 DTQEHSLFRTLKTIHRDDFHQPNFPGSSIEKGGPREPWHDIHCKLEGPV-AWDVLYNFEQRW 423 (813)
Q Consensus 363 Dt~~H~~~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhD~~~~i~Gpa-a~dl~~~F~~rW 423 (813)
...++..+.+++|. +.++.+.|.+.|
T Consensus 100 -----------------------------------~~n~E~~~~~~~~~~~~~~~~~F~~~W 126 (126)
T PF13091_consen 100 -----------------------------------RRNYELGVIIDDPELVKELIREFDQMW 126 (126)
T ss_dssp -----------------------------------CTSEEEEEEEECHHHHHHHHHHTHH-H
T ss_pred -----------------------------------cCCcceEEEEECHHHHHHHHHHHhccC
Confidence 12368899999995 899999999989
No 134
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=8.1e-11 Score=133.16 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=85.4
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEEC--C--eeeeeeeeccCCCCCCeeeeEEEEEecCC---cceEE
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLD--K--ARMARTRMITERTSRPHWNQSFRIYCAHR---VSHVV 79 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~--~--~~~~rT~vi~~~t~nP~WNE~F~~~v~~~---~~~l~ 79 (813)
+|.|+|.|++|++|+.+ +....+||||++++- + ....||.++++ ++||+|||+|.|.|+.. ...|.
T Consensus 297 ~g~ltv~v~kar~L~~~------~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~-~~npv~nesf~F~vp~~~l~~~~l~ 369 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSM------DVGGLSDPYVKVTLLDGDKRLSKKKTSVKKK-TLNPVFNETFVFDVPPEQLAEVSLE 369 (421)
T ss_pred CCeEEEEEEEecCCCcc------cCCCCCCccEEEEEecCCceeeeeeeecccC-CCCCcccccEEEeCCHHHhheeEEE
Confidence 49999999999999964 223348999999993 2 34458998888 99999999999977632 25799
Q ss_pred EEEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEccCCCCCcC
Q 003523 80 FTIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNI 123 (813)
Q Consensus 80 ~~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~ 123 (813)
|+|+|+|.++ .++||.+.+.... .|.....|.+++..-++++
T Consensus 370 l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~p~~pv 412 (421)
T KOG1028|consen 370 LTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEMLNSPRKPV 412 (421)
T ss_pred EEEEEcccccccceeeEEEecCCC--CchHHHHHHHHHhCccCce
Confidence 9999999999 5799998888765 5556778888877555554
No 135
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.06 E-value=4.6e-10 Score=100.59 Aligned_cols=88 Identities=15% Similarity=0.280 Sum_probs=70.8
Q ss_pred EEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCcceEEEEEEeCCCCC
Q 003523 10 LIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRVSHVVFTIKNDNPVG 89 (813)
Q Consensus 10 L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~~V~D~d~~g 89 (813)
|+|+|.+||++...... ....++||||+|++++..++|||+ +.||+|||+|.|++. .+..++|+|||+..-.
T Consensus 1 L~I~V~~~RdvdH~~~~---~~~~~~etyV~IKved~~kaRTr~----srnd~WnE~F~i~Vd-k~nEiel~VyDk~~~~ 72 (109)
T cd08689 1 LTITITSARDVDHIASP---RFSKRPETYVSIKVEDVERARTKP----SRNDRWNEDFEIPVE-KNNEEEVIVYDKGGDQ 72 (109)
T ss_pred CEEEEEEEecCccccch---hhccCCCcEEEEEECCEEEEeccC----CCCCcccceEEEEec-CCcEEEEEEEeCCCCe
Confidence 68999999999854210 022348999999999998889997 679999999999994 6889999999985533
Q ss_pred ceeEEEEEEecccccC
Q 003523 90 AILIGRAYVPVEDVAK 105 (813)
Q Consensus 90 ~~~IG~~~ipl~~l~~ 105 (813)
.-.||..=|.+++|..
T Consensus 73 ~~Pi~llW~~~sdi~E 88 (109)
T cd08689 73 PVPVGLLWLRLSDIAE 88 (109)
T ss_pred ecceeeehhhHHHHHH
Confidence 4589988888888774
No 136
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.04 E-value=9.8e-10 Score=104.41 Aligned_cols=93 Identities=10% Similarity=0.088 Sum_probs=75.5
Q ss_pred EEEEEEEeecCCCCCCCCCccCcc--cCCcEEEEEECC--eeeeeeeeccCCCCC--CeeeeEEEEEecCC---------
Q 003523 10 LIVRIYGIDKLHTGCGFGSCEQIV--GTALYATVDLDK--ARMARTRMITERTSR--PHWNQSFRIYCAHR--------- 74 (813)
Q Consensus 10 L~V~IieA~~L~~~~~~~~~~~~~--~sDPYv~v~l~~--~~~~rT~vi~~~t~n--P~WNE~F~~~v~~~--------- 74 (813)
|+|.|.+|++++.... ...+ .+||||+++|.+ ...++|.|..+ ++| |+||+.|.|++...
T Consensus 2 LRViIw~~~~v~~~~~----~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyr-slnG~~~FNwRfvF~~~~~~~~~~~~~~ 76 (133)
T cd08374 2 LRVIVWNTRDVLNDDT----NITGEKMSDIYVKGWLDGLEEDKQKTDVHYR-SLDGEGNFNWRFVFPFDYLPAEKKIVVI 76 (133)
T ss_pred EEEEEEECcCCccccc----ccCCccccCeEEEEEEccCcccccccceEEe-cCCCCcEEeEEEEEeeecCCccceeEEE
Confidence 8999999999774310 0111 289999999976 45679999999 999 99999999887651
Q ss_pred ---------------cceEEEEEEeCCCCC-ceeEEEEEEecccccCCc
Q 003523 75 ---------------VSHVVFTIKNDNPVG-AILIGRAYVPVEDVAKEF 107 (813)
Q Consensus 75 ---------------~~~l~~~V~D~d~~g-~~~IG~~~ipl~~l~~g~ 107 (813)
...|+|+|+|+|.++ +++||.+.+++..+..+.
T Consensus 77 ~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 77 KKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred eeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 257899999999988 789999999999888665
No 137
>PRK11263 cardiolipin synthase 2; Provisional
Probab=99.04 E-value=1.5e-09 Score=122.64 Aligned_cols=134 Identities=16% Similarity=0.135 Sum_probs=100.9
Q ss_pred hhHHHHHHHHHhcccEEEEEEeccCCceeEecCCCCCCCCCCchhhhhhHHHHHHHHHHHHHcCCeEEEEEecCCCCccc
Q 003523 199 RCWEDIFDAIASAEHFIYMTGWSMYAPITLLRDPRRIKPKGNITAEEMLKTTLGDLLKKKADEGVKVLLLIWDDRTSVDI 278 (813)
Q Consensus 199 ~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~g~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~ 278 (813)
.+.+.+.++|.+|+++|+|++- |++. + . .|.++|+.||+|||+|+||+ +..++..+
T Consensus 206 ~i~~~~~~~i~~A~~~I~I~tp------Yf~p-------~--~--------~l~~aL~~Aa~RGV~V~ii~-~~~~d~~~ 261 (411)
T PRK11263 206 DIERHYLKALRQARREVIIANA------YFFP-------G--Y--------RLLRALRNAARRGVRVRLIL-QGEPDMPI 261 (411)
T ss_pred HHHHHHHHHHHHhceEEEEEec------CcCC-------C--H--------HHHHHHHHHHHCCCEEEEEe-CCCCCcHH
Confidence 5677899999999999999972 2321 2 2 89999999999999999999 77655433
Q ss_pred ccccCcCCCCcHHHHHHHhcCCCEEEEcCCCCCccccccccccccccccccceEEEcCCCCCCCCCcceeEEEEccccCC
Q 003523 279 LKEDGLMGTHDEETADYFRKTKVRCVLCPRTSEIFTNIRGYQTSSIFTHHQKTVVVDSEVPGGGTQKRRVVSFVGGIDLC 358 (813)
Q Consensus 279 ~~~~g~~~t~~~~~~~~l~~~gV~~~~~~~~p~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~nl~ 358 (813)
... ........|.++||++..+.. ...|.|++|||++ +++||+.||.
T Consensus 262 ~~~------a~~~~~~~Ll~~Gv~I~~y~~----------------~~lHaK~~viD~~-----------~~~vGS~Nld 308 (411)
T PRK11263 262 VRV------GARLLYNYLLKGGVQIYEYCR----------------RPLHGKVALMDDH-----------WATVGSSNLD 308 (411)
T ss_pred HHH------HHHHHHHHHHHCCCEEEEecC----------------CCceeEEEEECCC-----------EEEEeCCcCC
Confidence 211 123456788889999875531 2579999999999 9999999987
Q ss_pred CccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCccccceeeeCh-HHHHHHHHHHHHHh
Q 003523 359 DGRYDTQEHSLFRTLKTIHRDDFHQPNFPGSSIEKGGPREPWHDIHCKLEGP-VAWDVLYNFEQRWT 424 (813)
Q Consensus 359 ~~r~Dt~~H~~~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhD~~~~i~Gp-aa~dl~~~F~~rW~ 424 (813)
..-+. -=.++.+.|.+| .+..+.+.|++.+.
T Consensus 309 ~rS~~-----------------------------------lN~E~~~~i~d~~~a~~l~~~~~~~~~ 340 (411)
T PRK11263 309 PLSLS-----------------------------------LNLEANLIIRDRAFNQTLRDNLNGLIA 340 (411)
T ss_pred HHHhh-----------------------------------hhhhcCEEEeCHHHHHHHHHHHHHHHH
Confidence 63210 013667888888 57889999999886
No 138
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.02 E-value=1e-09 Score=125.16 Aligned_cols=124 Identities=15% Similarity=0.312 Sum_probs=96.8
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECC----eeeeeeeeccCCCCCCeee-eEEEEEecCCc-ceEEE
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDK----ARMARTRMITERTSRPHWN-QSFRIYCAHRV-SHVVF 80 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~t~nP~WN-E~F~~~v~~~~-~~l~~ 80 (813)
-=+|.|.|+.||.|+... ..+ .-|||.|.+-| ..+.+|+++.+|++||+|| |+|+|.+.++. ..|.|
T Consensus 1064 p~~lsv~vigaRHL~k~g------r~i-~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF 1136 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLG------RSI-ACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRF 1136 (1267)
T ss_pred ceEEEEEEeeccccccCC------CCc-cCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEE
Confidence 346899999999999531 111 56999999954 2344555555559999999 99999987764 78999
Q ss_pred EEEeCCCCCc-eeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEEEEEeeecccC
Q 003523 81 TIKNDNPVGA-ILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQFVHVVND 141 (813)
Q Consensus 81 ~V~D~d~~g~-~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f~~~~~~ 141 (813)
.|+|.|.+++ .|||++..|+..|..|. +-+||.+...+.+ .-++|.+.++..|+.+.
T Consensus 1137 ~V~eeDmfs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySEdl-ELaSLLv~i~m~~~~~~ 1194 (1267)
T KOG1264|consen 1137 VVYEEDMFSDPNFLAQATYPVKAIKSGF---RSVPLKNGYSEDL-ELASLLVFIEMRPVLES 1194 (1267)
T ss_pred EEecccccCCcceeeeeecchhhhhccc---eeeecccCchhhh-hhhhheeeeEeccccCc
Confidence 9999999996 69999999999999997 6779977555544 34678888888886654
No 139
>PRK05443 polyphosphate kinase; Provisional
Probab=98.89 E-value=7.4e-09 Score=122.99 Aligned_cols=132 Identities=15% Similarity=0.170 Sum_probs=98.4
Q ss_pred HHHHHHHHhccc-----eEEEeeccccccccCccccccccchhhhhccchHHHHHHHHHHHHcCCCeEEEEEecCCCCCC
Q 003523 498 DAYINAIRRAKN-----FIYIENQYFIGSSYGWLSKDIRVEDINALQLIPKELSLKIVSKIEAGEDFRVYIVIPMWPEGV 572 (813)
Q Consensus 498 ~ayl~aI~~Ak~-----~IyIEnqYFi~~~~~~~~~~~~~~~~~~~n~i~~~~a~~i~~a~~~g~~v~V~IvlP~~p~g~ 572 (813)
+..++.|++|.+ .|.|+- |-+++ + ..++.+|.+|+++| ++|.|+++..+-..
T Consensus 351 ~~~~~~i~~Aa~DP~V~~Ik~tl-Yr~~~-----~---------------s~iv~aL~~Aa~~G--k~V~vlve~karfd 407 (691)
T PRK05443 351 DPVVEFLRQAAADPDVLAIKQTL-YRTSK-----D---------------SPIVDALIEAAENG--KQVTVLVELKARFD 407 (691)
T ss_pred hHHHHHHHHhccCCCeeEEEEEE-EEecC-----C---------------HHHHHHHHHHHHcC--CEEEEEEccCcccc
Confidence 567889999999 899976 44432 1 25788999999999 89999999754111
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCceEEeecCCccccccCCCCCCCCCCchHHHHHhhccceEE
Q 003523 573 PESASVQAILGWQRRTIEMMYADVAQAIQKKGLDDAYPRDYLTFFCLGNRENIEEYNPEQSSESNSDYYKAQKARRFMIY 652 (813)
Q Consensus 573 ~~~~~~~~i~~~~~~t~~~~~~~i~~~L~~~gv~~~~~~~yl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy 652 (813)
.++.. .+++.|+++|+++. | .|.+ ..
T Consensus 408 ----------e~~n~-------~~~~~L~~aGv~V~--------y---------~~~~--------------------~k 433 (691)
T PRK05443 408 ----------EEANI-------RWARRLEEAGVHVV--------Y---------GVVG--------------------LK 433 (691)
T ss_pred ----------HHHHH-------HHHHHHHHcCCEEE--------E---------ccCC--------------------cc
Confidence 12222 25789999999872 2 1222 38
Q ss_pred EeeeEEEEece-------EEEEcccccCcccccCCCCcceEEeeecCCccCCCCchhhhHHHHHHHHHHH
Q 003523 653 VHSKMMIVDDE-------YIIIGSANINQRSMDGARDTEIAMGAFQPRHLNTTEPARGQIYGFRIALWYE 715 (813)
Q Consensus 653 vHsK~mIVDD~-------~~~iGSaNin~RS~~~~~DsEi~v~i~~~~~~~~~~~~~~~~~~lR~~Lw~e 715 (813)
+|||+++||++ |+.|||+|+|.||...+ +|+++.+.++..+ ..+..+...||..
T Consensus 434 ~HaK~~lid~~e~~~~~~~~~iGTgN~n~~s~~~y--~D~~l~t~d~~i~-------~d~~~~F~~l~~~ 494 (691)
T PRK05443 434 THAKLALVVRREGGGLRRYVHLGTGNYNPKTARLY--TDLSLLTADPEIG-------EDVTRLFNYLTGY 494 (691)
T ss_pred ceeEEEEEEeecCCceeEEEEEcCCCCCcchhhhc--cceeEEEeChHHH-------HHHHHHHHHHhCc
Confidence 99999999999 99999999999999766 9999998877543 3467777777653
No 140
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.83 E-value=1.2e-08 Score=112.63 Aligned_cols=121 Identities=17% Similarity=0.242 Sum_probs=97.5
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeE-EEEEecCC---cceEEEEE
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQS-FRIYCAHR---VSHVVFTI 82 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~-F~~~v~~~---~~~l~~~V 82 (813)
-|.|.|+|..||+||-+++.+ ...|.||.|+++.... ||-|..+ ++||.||-. |.|.|.+. .+.|.|++
T Consensus 2 pgkl~vki~a~r~lpvmdkas-----d~tdafveik~~n~t~-ktdvf~k-slnp~wnsdwfkfevddadlqdeplqi~l 74 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKAS-----DLTDAFVEIKFANTTF-KTDVFLK-SLNPQWNSDWFKFEVDDADLQDEPLQIRL 74 (1169)
T ss_pred CCcceeEEEeccCCccccccc-----ccchheeEEEecccce-ehhhhhh-hcCCcccccceEEecChhhhccCCeeEEE
Confidence 488999999999999763222 2379999999999875 9999999 999999964 89988653 37899999
Q ss_pred EeCCCCC-ceeEEEEEEeccccc----------CCceeeeEEEccCCCCCcCCCCCeEEEEEEeee
Q 003523 83 KNDNPVG-AILIGRAYVPVEDVA----------KEFVIDRSFDIRDEEYKNIPGGSKIHVMLQFVH 137 (813)
Q Consensus 83 ~D~d~~g-~~~IG~~~ipl~~l~----------~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f~~ 137 (813)
.|+|..+ +|-||+++|.+..|. .|..+.+|+|+.+.-.. -+|+|.+-++.--
T Consensus 75 ld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihg---irgeinvivkvdl 137 (1169)
T KOG1031|consen 75 LDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHG---IRGEINVIVKVDL 137 (1169)
T ss_pred ecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceeccc---ccceeEEEEEEee
Confidence 9999998 589999999988765 25678999999875322 3688888776443
No 141
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.80 E-value=1.6e-09 Score=73.82 Aligned_cols=27 Identities=67% Similarity=1.040 Sum_probs=18.8
Q ss_pred ccccccceEEEcCCCCCCCCCcceeEEEEccccCCCcc
Q 003523 324 IFTHHQKTVVVDSEVPGGGTQKRRVVSFVGGIDLCDGR 361 (813)
Q Consensus 324 ~~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~nl~~~r 361 (813)
.++||||++|||++ +|||||+|||++|
T Consensus 2 ~~~~H~K~~vvD~~-----------~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 2 GGSHHQKFVVVDDR-----------VAFVGGANLCDGR 28 (28)
T ss_dssp TBEE---EEEETTT-----------EEEEE---SSHHH
T ss_pred CcceeeEEEEEcCC-----------EEEECceecCCCC
Confidence 47999999999999 9999999999864
No 142
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=98.69 E-value=1.6e-07 Score=107.11 Aligned_cols=126 Identities=16% Similarity=0.220 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHhccceEEEeeccccccccCccccccccchhhhhccchHHHHHHHHHHHHcCCCeEEEEEecCCCCCCC
Q 003523 494 RSIQDAYINAIRRAKNFIYIENQYFIGSSYGWLSKDIRVEDINALQLIPKELSLKIVSKIEAGEDFRVYIVIPMWPEGVP 573 (813)
Q Consensus 494 ~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~~~~~~~~~~~~~~~n~i~~~~a~~i~~a~~~g~~v~V~IvlP~~p~g~~ 573 (813)
.++.++++++|++|+++||||+-||-.. + ++.++..+|.+|+++.++|+|+|++..+-....
T Consensus 34 ~~f~~~Ll~~I~~Ak~~I~l~~y~~~~D------~------------~g~~il~AL~~a~~~~~gv~VrvLvD~~Ra~Rg 95 (451)
T PRK09428 34 ADFRETLLEKIASAKKRIYIVALYLEDD------E------------AGREILDALYQAKQQNPELDIKVLVDWHRAQRG 95 (451)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEEecCC------c------------hHHHHHHHHHHHHhcCCCcEEEEEEEccccccc
Confidence 4689999999999999999999888632 2 256899999998876667999999995311000
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCCCCCCceEEeecCCccccccCCCCCCCCCCchHHHHHhhccceE
Q 003523 574 ESASVQAILGWQRRTIEMMYADVAQAIQKKG--LDDAYPRDYLTFFCLGNRENIEEYNPEQSSESNSDYYKAQKARRFMI 651 (813)
Q Consensus 574 ~~~~~~~i~~~~~~t~~~~~~~i~~~L~~~g--v~~~~~~~yl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 651 (813)
..++. ... ....++..|.++| +++ .+|.+..+ .+....
T Consensus 96 ~iG~~-------~~~---~~~~~~~~l~~~~~gv~v-------~~f~~p~~-----------------------~~e~~g 135 (451)
T PRK09428 96 LIGAA-------ASN---TNADWYCEMAQEYPGVDI-------PVYGVPVN-----------------------TREALG 135 (451)
T ss_pred ccccC-------CCC---cCHHHHHHHHHhCCCceE-------EEcCCccc-----------------------cchhhh
Confidence 00000 000 0122456777654 554 34432110 000122
Q ss_pred EEeeeEEEEeceEEEEcccccCccccc
Q 003523 652 YVHSKMMIVDDEYIIIGSANINQRSMD 678 (813)
Q Consensus 652 yvHsK~mIVDD~~~~iGSaNin~RS~~ 678 (813)
..|-|++||||++++.| ||||+-.+.
T Consensus 136 r~HrKi~IiD~~v~ysG-aNi~d~Yl~ 161 (451)
T PRK09428 136 VLHLKGFIIDDTVLYSG-ASLNNVYLH 161 (451)
T ss_pred hceeeEEEECCCEEEec-ccccHHHhc
Confidence 58999999999999999 899996654
No 143
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=98.69 E-value=3e-07 Score=100.41 Aligned_cols=175 Identities=19% Similarity=0.284 Sum_probs=114.5
Q ss_pred CceeeEEeeccccCcccCCCCChHHHhhhccccCCCCcchhHHHHHHHHHHHhccceEEEeeccccccccCccccccccc
Q 003523 454 ESWNVQIFRSIDGTAAADFPTDPFEAARVGLITGKDNVFDRSIQDAYINAIRRAKNFIYIENQYFIGSSYGWLSKDIRVE 533 (813)
Q Consensus 454 ~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~~~~~~~~~~ 533 (813)
.+|.++|+.||+.|. .||.. ... .+..+|++.+|++|+..|+|..-|..-..- + +-..
T Consensus 48 ~~C~~~vvESIP~gl--~f~~~--------------t~~-~sT~eaW~~Ll~sA~~eldIas~ywsL~~~---d--~~~~ 105 (456)
T KOG3603|consen 48 DTCKLVLVESIPAGL--TFPDA--------------SPF-LSTKEAWLELLSTAQEELDIASFYWSLTGK---D--TGVV 105 (456)
T ss_pred CceeEEEEecccccC--cCccc--------------CCC-ccHHHHHHHHhhccceEEEEEEEeeccccc---e--eccC
Confidence 457889999998653 34421 111 355699999999999999999876643210 0 0000
Q ss_pred hhhhhccchHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCCC
Q 003523 534 DINALQLIPKELSLKIVSKIEAGEDFRVYIVIPMWPEGVPESASVQAILGWQRRTIEMMYADVAQAIQKKGL-DDAYPRD 612 (813)
Q Consensus 534 ~~~~~n~i~~~~a~~i~~a~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~~t~~~~~~~i~~~L~~~gv-~~~~~~~ 612 (813)
+... .-+..+.+.|.++..+| +.|+|....-+.+.+.. -...|.+.|. ++.
T Consensus 106 dsSt--~~G~~vy~~L~~~~~~g--IsiriA~~~p~~~~~~~--------------------d~~~Le~~Gaa~vr---- 157 (456)
T KOG3603|consen 106 DSST--QYGEQVYNTLLALAKSG--VKIRIAQSYPSGGPPNA--------------------DLQVLESLGLAQVR---- 157 (456)
T ss_pred CCcc--hHHHHHHHHHHHhccCC--eEEEEEeecCCCCCCcc--------------------cHHHHHhCCCceEE----
Confidence 0000 02556777777776677 88999887644433321 1345666673 221
Q ss_pred ceEEeecCCccccccCCCCCCCCCCchHHHHHhhccceEEEeeeEEEEeceEEEEcccccCcccccCCCCcceEEeeecC
Q 003523 613 YLTFFCLGNRENIEEYNPEQSSESNSDYYKAQKARRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGARDTEIAMGAFQP 692 (813)
Q Consensus 613 yl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHsK~mIVDD~~~~iGSaNin~RS~~~~~DsEi~v~i~~~ 692 (813)
.+.+ ..|.+ -..+|+|..+||+....+||||+|+||+.+- -|+++++++.
T Consensus 158 -----~id~----~~l~g-------------------~GvlHtKf~vvD~khfylGSaNfDWrSlTqv--kElGv~v~NC 207 (456)
T KOG3603|consen 158 -----SIDM----NRLTG-------------------GGVLHTKFWVVDIKHFYLGSANFDWRSLTQV--KELGVVVRNC 207 (456)
T ss_pred -----eecc----ccccc-------------------CceEEEEEEEEecceEEEeccccchhhccce--eEeeeEEecC
Confidence 1111 12221 1389999999999999999999999999644 8999999988
Q ss_pred CccCCCCchhhhHHHHHHHHHH
Q 003523 693 RHLNTTEPARGQIYGFRIALWY 714 (813)
Q Consensus 693 ~~~~~~~~~~~~~~~lR~~Lw~ 714 (813)
..++ .+++.+..+.|.
T Consensus 208 pcla------kDL~kiFe~yW~ 223 (456)
T KOG3603|consen 208 PCLA------KDLKKIFERYWY 223 (456)
T ss_pred hhHH------HHHHHHHHHHhc
Confidence 6554 457788888884
No 144
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.62 E-value=8.1e-09 Score=116.96 Aligned_cols=122 Identities=13% Similarity=0.267 Sum_probs=91.4
Q ss_pred EEEEEEEEeecCCCCCCCCCccCccc-CCcEEEEEECC-------------e-----------------eeeeeeeccCC
Q 003523 9 ILIVRIYGIDKLHTGCGFGSCEQIVG-TALYATVDLDK-------------A-----------------RMARTRMITER 57 (813)
Q Consensus 9 ~L~V~IieA~~L~~~~~~~~~~~~~~-sDPYv~v~l~~-------------~-----------------~~~rT~vi~~~ 57 (813)
-|.|.+.+|++|-++ +.+| ||||+.+.+-. + -+.-|.|.++
T Consensus 115 ~l~is~~~ak~l~ak-------d~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~- 186 (1103)
T KOG1328|consen 115 LLNISLLEAKDLIAK-------DVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKK- 186 (1103)
T ss_pred HHHHHHHHhcCcccc-------CCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccc-
Confidence 355667788888765 4444 99999987721 0 1224777777
Q ss_pred CCCCeeeeEEEEEecCC-cceEEEEEEeCCCC-------------------------------------CceeEEEEEEe
Q 003523 58 TSRPHWNQSFRIYCAHR-VSHVVFTIKNDNPV-------------------------------------GAILIGRAYVP 99 (813)
Q Consensus 58 t~nP~WNE~F~~~v~~~-~~~l~~~V~D~d~~-------------------------------------g~~~IG~~~ip 99 (813)
|+||+|||+|.|.+.+- .+.+.+.|+|+|-- .|||+|.+.||
T Consensus 187 TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNip 266 (1103)
T KOG1328|consen 187 TLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIP 266 (1103)
T ss_pred cCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccc
Confidence 99999999999999764 37788889886631 26799999999
Q ss_pred cccccCCceeeeEEEccCCCCCcCCCCCeEEEEEEeeeccc
Q 003523 100 VEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQFVHVVN 140 (813)
Q Consensus 100 l~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f~~~~~ 140 (813)
+.+|.+.. ++.||.|...+.+. +..|.++++++....++
T Consensus 267 l~EiP~~G-ld~WFkLepRS~~S-~VqG~~~LklwLsT~e~ 305 (1103)
T KOG1328|consen 267 LAEIPPDG-LDQWFKLEPRSDKS-KVQGQVKLKLWLSTKEE 305 (1103)
T ss_pred hhcCCcch-HHHHhccCcccccc-cccceEEEEEEEeeecc
Confidence 99998633 78999998766554 37899999998876543
No 145
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=98.55 E-value=5.3e-08 Score=66.97 Aligned_cols=25 Identities=60% Similarity=0.887 Sum_probs=24.2
Q ss_pred EEeeeEEEEeceEEEEcccccCccc
Q 003523 652 YVHSKMMIVDDEYIIIGSANINQRS 676 (813)
Q Consensus 652 yvHsK~mIVDD~~~~iGSaNin~RS 676 (813)
+.|+|+||||+++++|||+||+.||
T Consensus 4 ~~H~K~~v~D~~~~~iGs~N~~~~~ 28 (28)
T smart00155 4 VLHTKLMIVDDEIAYIGSANLDGRS 28 (28)
T ss_pred cEEeEEEEEcCCEEEEeCccCCCCC
Confidence 7999999999999999999999987
No 146
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.55 E-value=2.1e-08 Score=113.72 Aligned_cols=90 Identities=16% Similarity=0.339 Sum_probs=75.4
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCccc-CCcEEEEEECCe------eeeeeeeccCCCCCCeeeeEEEEEecC-----C
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVG-TALYATVDLDKA------RMARTRMITERTSRPHWNQSFRIYCAH-----R 74 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~-sDPYv~v~l~~~------~~~rT~vi~~~t~nP~WNE~F~~~v~~-----~ 74 (813)
|.+|-|.|+.|+++-+- +.+| |||||+|.|... .+.||+|+++ |+||+++|+|+|.|+. .
T Consensus 946 ~q~L~veVlhA~diipL-------D~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~r-tLnPVfDE~FeFsVp~e~c~te 1017 (1103)
T KOG1328|consen 946 AQTLVVEVLHAKDIIPL-------DSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSR-TLNPVFDETFEFSVPPEPCSTE 1017 (1103)
T ss_pred ccchhhhhhcccccccc-------CCCCCCCCeEEEEeccccccccchhhhhhhhhc-cccchhhhheeeecCccccccc
Confidence 56677888999998763 4555 999999999763 4569999999 9999999999998753 2
Q ss_pred cceEEEEEEeCCCCC-ceeEEEEEEeccccc
Q 003523 75 VSHVVFTIKNDNPVG-AILIGRAYVPVEDVA 104 (813)
Q Consensus 75 ~~~l~~~V~D~d~~g-~~~IG~~~ipl~~l~ 104 (813)
...|.|+|+|+|... +||-|++.+.|.++.
T Consensus 1018 ~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1018 TAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred cceEEEEeeccceecccccchHHHHhhCCCC
Confidence 468999999999988 689999999988775
No 147
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=98.40 E-value=1.5e-06 Score=99.79 Aligned_cols=136 Identities=20% Similarity=0.219 Sum_probs=97.6
Q ss_pred HHHHHHHHHhcccEEEEEEeccCCceeEecCCCCCCCCCCchhhhhhHHHHHHHHHHHHHcCCeEEEEEecCC--CCccc
Q 003523 201 WEDIFDAIASAEHFIYMTGWSMYAPITLLRDPRRIKPKGNITAEEMLKTTLGDLLKKKADEGVKVLLLIWDDR--TSVDI 278 (813)
Q Consensus 201 ~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~g~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~--~s~~~ 278 (813)
-..++.+|.+|+++|+|++= |++. + . .+.++|+.++++||+|+|++ ++. ....+
T Consensus 272 ~~~~~~~i~~A~~~i~i~~p------Yf~~-------~--~--------~~~~al~~a~~~Gv~V~ii~-~~~~~~d~~~ 327 (438)
T COG1502 272 NRLLLKAINSARESILIATP------YFVP-------D--R--------ELLAALKAAARRGVDVRIII-PSLGANDSAI 327 (438)
T ss_pred HHHHHHHHHhhceEEEEEcC------CcCC-------C--H--------HHHHHHHHHHhcCCEEEEEe-CCCCCCChHH
Confidence 36899999999999999971 2332 2 2 78899999999999999998 743 22221
Q ss_pred ccccCcCCCCcHHHHHHHhcCCCEEEEcCCCCCccccccccccccccccccceEEEcCCCCCCCCCcceeEEEEccccCC
Q 003523 279 LKEDGLMGTHDEETADYFRKTKVRCVLCPRTSEIFTNIRGYQTSSIFTHHQKTVVVDSEVPGGGTQKRRVVSFVGGIDLC 358 (813)
Q Consensus 279 ~~~~g~~~t~~~~~~~~l~~~gV~~~~~~~~p~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~nl~ 358 (813)
.. .......+.+...|+++..++. ....|.|++|||++ +++||+.|+.
T Consensus 328 ~~------~~~~~~~~~l~~~gv~i~~~~~---------------g~~lH~K~~iiD~~-----------~~~vGS~N~~ 375 (438)
T COG1502 328 VH------AAYRAYLKELLEAGVKVYEYPG---------------GAFLHSKVMIIDDR-----------TVLVGSANLD 375 (438)
T ss_pred HH------HHHHHHHHHHHHhCCEEEEecC---------------CCcceeeEEEEcCC-----------EEEEeCCcCC
Confidence 11 0113456677788998865541 03689999999999 9999999988
Q ss_pred CccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCccccceeeeCh-HHHHHHHHHHHHHhhcc
Q 003523 359 DGRYDTQEHSLFRTLKTIHRDDFHQPNFPGSSIEKGGPREPWHDIHCKLEGP-VAWDVLYNFEQRWTKQA 427 (813)
Q Consensus 359 ~~r~Dt~~H~~~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhD~~~~i~Gp-aa~dl~~~F~~rW~~~~ 427 (813)
..-+.- =-++.+.|+.+ .+.++...|...|....
T Consensus 376 ~rS~~l-----------------------------------N~E~~~~i~d~~~~~~~~~~~~~~~~~s~ 410 (438)
T COG1502 376 PRSLRL-----------------------------------NFEVGLVIEDPELALKLRREFEADLARSK 410 (438)
T ss_pred HhHHHH-----------------------------------hhhheeEEeCHHHHHHHHHHHHHHHHHHh
Confidence 742210 02467778887 78999999997776543
No 148
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.24 E-value=4.1e-07 Score=62.10 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=18.1
Q ss_pred EEEeeeEEEEeceEEEEcccccCccc
Q 003523 651 IYVHSKMMIVDDEYIIIGSANINQRS 676 (813)
Q Consensus 651 iyvHsK~mIVDD~~~~iGSaNin~RS 676 (813)
...|+|++||||++++|||+||+.|+
T Consensus 3 ~~~H~K~~vvD~~~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 3 GSHHQKFVVVDDRVAFVGGANLCDGR 28 (28)
T ss_dssp BEE---EEEETTTEEEEE---SSHHH
T ss_pred cceeeEEEEEcCCEEEECceecCCCC
Confidence 37999999999999999999999875
No 149
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.09 E-value=2.7e-06 Score=78.83 Aligned_cols=104 Identities=24% Similarity=0.445 Sum_probs=77.3
Q ss_pred EEEEEEEeecCCCCCC--------CCCccCcccCCcEEEEEE---CCeeeeeeeeccCCCCCCeeeeEEEEEec------
Q 003523 10 LIVRIYGIDKLHTGCG--------FGSCEQIVGTALYATVDL---DKARMARTRMITERTSRPHWNQSFRIYCA------ 72 (813)
Q Consensus 10 L~V~IieA~~L~~~~~--------~~~~~~~~~sDPYv~v~l---~~~~~~rT~vi~~~t~nP~WNE~F~~~v~------ 72 (813)
|.|.|+.|.+|+...+ ++.. ...|-++||+|.+ .+.+..+|+++.+ +-.|.+|-+|+|+|.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~-a~VGVN~yv~i~lSFl~~~e~r~TrtVAr-SFcPeF~Hh~Efpc~lv~~~~ 78 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYS-ATVGVNSYVTIHLSFLPEKELRRTRTVAR-SFCPEFNHHVEFPCNLVVQRN 78 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccc-eecccceEEEEEeccCCCCceeeccchhh-hcCCCccceEEEecccEEEcC
Confidence 5789999999984211 1111 2345899999996 3455569999999 999999999999986
Q ss_pred --C--------CcceEEEEEEeCCCC-----------CceeEEEEEEecccccC-CceeeeEEEc
Q 003523 73 --H--------RVSHVVFTIKNDNPV-----------GAILIGRAYVPVEDVAK-EFVIDRSFDI 115 (813)
Q Consensus 73 --~--------~~~~l~~~V~D~d~~-----------g~~~IG~~~ipl~~l~~-g~~~~~w~~L 115 (813)
. ....+.|+|++.++- +|-++|.+.||+.+|+. ...+.+|||+
T Consensus 79 ~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 79 SGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred CCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1 125789999876542 23489999999999986 3347899986
No 150
>PF13918 PLDc_3: PLD-like domain
Probab=98.01 E-value=0.00013 Score=72.39 Aligned_cols=133 Identities=21% Similarity=0.317 Sum_probs=75.6
Q ss_pred ccceeeeC-hHHHHHHHHHHHHHhhccCCCCCCCCcCcccccCCCCCcC-cCCCCceeeEEeeccccCcccCCCCChHHH
Q 003523 402 DIHCKLEG-PVAWDVLYNFEQRWTKQADKKDLFPPESLHQNLIHPLLDT-SKDLESWNVQIFRSIDGTAAADFPTDPFEA 479 (813)
Q Consensus 402 D~~~~i~G-paa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~ 479 (813)
++.+.+.- ..|.||.+.|...|.......++.. .|..-.+ ...+....+++-.+... ..+..+|.
T Consensus 7 ELGv~~~NscLA~DL~kiF~~Yw~lg~~~~iP~~--------Wp~~~~t~~n~~~pl~~~~n~~~~~---vf~SsSPp-- 73 (177)
T PF13918_consen 7 ELGVVVYNSCLAQDLQKIFDTYWYLGSNSSIPSS--------WPSRYSTAYNRPNPLSLHLNGTKSG---VFFSSSPP-- 73 (177)
T ss_pred eeeEEecCcHHHHHHHHHHHHHHhhCCCCCCCCc--------hhhhhhhcccCCCCeEEEeCCccee---EEecCCCc--
Confidence 34444444 4799999999999987654322111 1110000 01112222222111100 01111222
Q ss_pred hhhccccCCCCcchhHHHHHHHHHHHhccceEEEeecccccccc------CccccccccchhhhhccchHHHHHHHHHH-
Q 003523 480 ARVGLITGKDNVFDRSIQDAYINAIRRAKNFIYIENQYFIGSSY------GWLSKDIRVEDINALQLIPKELSLKIVSK- 552 (813)
Q Consensus 480 ~~~~l~~~~~~~~~~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~------~~~~~~~~~~~~~~~n~i~~~~a~~i~~a- 552 (813)
.+|+.+.+.| .+|.++.|++|++||||+-.-|.|... .||. |-.+|.+|
T Consensus 74 ----~~~~~gRT~D---ldAIl~~I~~A~~fI~IsVMdY~P~~~~~~~~~YWP~-----------------ID~ALR~AA 129 (177)
T PF13918_consen 74 ----PFCPKGRTLD---LDAILSVIDSAKKFIYISVMDYLPTSRYSKPNRYWPV-----------------IDDALRRAA 129 (177)
T ss_pred ----ccCCCCCCcH---HHHHHHHHHhHhheEEEEEeecCCeeecCCCCCcchh-----------------HHHHHHHHH
Confidence 2344444433 789999999999999999888877532 5762 34455544
Q ss_pred HHcCCCeEEEEEecCCCCCCC
Q 003523 553 IEAGEDFRVYIVIPMWPEGVP 573 (813)
Q Consensus 553 ~~~g~~v~V~IvlP~~p~g~~ 573 (813)
+.|| |+|++++..|....|
T Consensus 130 ~~R~--V~VRlLIS~W~ht~p 148 (177)
T PF13918_consen 130 IERG--VKVRLLISCWKHTDP 148 (177)
T ss_pred HHcC--CeEEEEEeecCCCCh
Confidence 5788 999999999875444
No 151
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.99 E-value=9.3e-06 Score=93.14 Aligned_cols=105 Identities=13% Similarity=0.201 Sum_probs=76.9
Q ss_pred cccCCcEEEEEECCe---eeeeeeeccCCCCCCeeeeEEEEEecCC----------------cceEEEEEEe-CCCCC-c
Q 003523 32 IVGTALYATVDLDKA---RMARTRMITERTSRPHWNQSFRIYCAHR----------------VSHVVFTIKN-DNPVG-A 90 (813)
Q Consensus 32 ~~~sDPYv~v~l~~~---~~~rT~vi~~~t~nP~WNE~F~~~v~~~----------------~~~l~~~V~D-~d~~g-~ 90 (813)
.+++||||+|.+.+. ...+|+++++ |.||.|||.|+|.+... ...|.+.+++ ++.+. +
T Consensus 148 ~~~~dp~~~v~~~g~~~~~~~~T~~~kk-t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~ 226 (800)
T KOG2059|consen 148 NGQCDPFARVTLCGPSKLKEKKTKVKKK-TTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVIND 226 (800)
T ss_pred CCCCCcceEEeecccchhhccccceeee-ccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhh
Confidence 345999999999652 2258999999 99999999999987543 1345666676 45444 7
Q ss_pred eeEEEEEEecccccCCceeeeEEEccC-CCCCcC---CCCCeEEEEEEeee
Q 003523 91 ILIGRAYVPVEDVAKEFVIDRSFDIRD-EEYKNI---PGGSKIHVMLQFVH 137 (813)
Q Consensus 91 ~~IG~~~ipl~~l~~g~~~~~w~~L~~-~~gk~~---~~~g~l~l~l~f~~ 137 (813)
+|+|++.+|+..+......+.||-|+. ++|+.. ..-|.+++.+.|+.
T Consensus 227 ~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 227 VFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred hhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence 899999999988774444678999974 334322 23478889888875
No 152
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=97.96 E-value=6.4e-05 Score=89.45 Aligned_cols=131 Identities=16% Similarity=0.199 Sum_probs=89.8
Q ss_pred HHHHHHHHhccc-----eEEEeeccccccccCccccccccchhhhhccchHHHHHHHHHHHHcCCCeEEEEEecCCCCCC
Q 003523 498 DAYINAIRRAKN-----FIYIENQYFIGSSYGWLSKDIRVEDINALQLIPKELSLKIVSKIEAGEDFRVYIVIPMWPEGV 572 (813)
Q Consensus 498 ~ayl~aI~~Ak~-----~IyIEnqYFi~~~~~~~~~~~~~~~~~~~n~i~~~~a~~i~~a~~~g~~v~V~IvlP~~p~g~ 572 (813)
...++.|++|.+ .|.|+- |-+++. ..++.+|.+|+++| ++|.|++-...-..
T Consensus 342 ~~v~~~i~~Aa~DP~V~~Ik~tl-Yr~~~~--------------------s~ii~aL~~Aa~~G--k~V~v~veLkArfd 398 (672)
T TIGR03705 342 DPVVEFLRQAAEDPDVLAIKQTL-YRTSKD--------------------SPIIDALIEAAENG--KEVTVVVELKARFD 398 (672)
T ss_pred HHHHHHHHHHhcCCCceEEEEEE-EEecCC--------------------cHHHHHHHHHHHcC--CEEEEEEEehhhcc
Confidence 567889999998 899976 544321 15788999999999 77888887432111
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCceEEeecCCccccccCCCCCCCCCCchHHHHHhhccceEE
Q 003523 573 PESASVQAILGWQRRTIEMMYADVAQAIQKKGLDDAYPRDYLTFFCLGNRENIEEYNPEQSSESNSDYYKAQKARRFMIY 652 (813)
Q Consensus 573 ~~~~~~~~i~~~~~~t~~~~~~~i~~~L~~~gv~~~~~~~yl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy 652 (813)
- ... -.+.+.|+++|+++- |++. ...
T Consensus 399 e-~~n----------------i~wa~~le~aG~~vi--------yg~~-----------------------------~~k 424 (672)
T TIGR03705 399 E-EAN----------------IRWARRLEEAGVHVV--------YGVV-----------------------------GLK 424 (672)
T ss_pred c-hhh----------------HHHHHHHHHcCCEEE--------EcCC-----------------------------Cee
Confidence 1 111 124678999999763 3221 148
Q ss_pred EeeeEEEEec-------eEEEEcccccCcccccCCCCcceEEeeecCCccCCCCchhhhHHHHHHHHHH
Q 003523 653 VHSKMMIVDD-------EYIIIGSANINQRSMDGARDTEIAMGAFQPRHLNTTEPARGQIYGFRIALWY 714 (813)
Q Consensus 653 vHsK~mIVDD-------~~~~iGSaNin~RS~~~~~DsEi~v~i~~~~~~~~~~~~~~~~~~lR~~Lw~ 714 (813)
+|||+|+||. .|+.||+.|+|......- +++++..-++. ....+..+...||.
T Consensus 425 ~H~K~~li~r~~~~~~~~y~~igTgN~n~~ta~~y--~D~~l~t~~~~-------i~~d~~~~F~~l~~ 484 (672)
T TIGR03705 425 THAKLALVVRREGGELRRYVHLGTGNYHPKTARLY--TDLSLFTADPE-------IGRDVARVFNYLTG 484 (672)
T ss_pred eeeEEEEEEEeeCCceEEEEEecCCCCCCcccccc--cceeEEEeChH-------HHHHHHHHHHHhhC
Confidence 9999999997 489999999999976545 66776644432 23346677777765
No 153
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=97.82 E-value=7.3e-05 Score=87.51 Aligned_cols=115 Identities=17% Similarity=0.301 Sum_probs=89.2
Q ss_pred ccceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECC------eeeeeeeeccCCCCCCeeeeE-EEEE--ecCCc
Q 003523 5 LLHGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDK------ARMARTRMITERTSRPHWNQS-FRIY--CAHRV 75 (813)
Q Consensus 5 ll~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~------~~~~rT~vi~~~t~nP~WNE~-F~~~--v~~~~ 75 (813)
..-++|.|+||++.=|..+ + .--||.|++=+ .+..||+++..|+.||+|||+ |.|. +-...
T Consensus 700 vIA~t~sV~VISgqFLSdr-------k---vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeL 769 (1189)
T KOG1265|consen 700 VIAATLSVTVISGQFLSDR-------K---VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPEL 769 (1189)
T ss_pred eEEeeEEEEEEeeeecccc-------c---cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccch
Confidence 3458999999999999854 1 34799999944 244689999988999999997 7775 33345
Q ss_pred ceEEEEEEeCCCCCceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEEEEEee
Q 003523 76 SHVVFTIKNDNPVGAILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQFV 136 (813)
Q Consensus 76 ~~l~~~V~D~d~~g~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f~ 136 (813)
..|.|.|++..- .+||.-.+|+..|.+|+ +.+.|.++.++|+ .-..|.+.+...
T Consensus 770 A~lRiavyeEgg---K~ig~RIlpvd~l~~GY---rhv~LRse~Nqpl-~lp~Lfv~i~~k 823 (1189)
T KOG1265|consen 770 ASLRIAVYEEGG---KFIGQRILPVDGLNAGY---RHVCLRSESNQPL-TLPALFVYIVLK 823 (1189)
T ss_pred hheeeeeeccCC---ceeeeeccchhcccCcc---eeEEecCCCCCcc-ccceeEEEEEee
Confidence 789999999744 89999999999999998 6778888777776 335566555433
No 154
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.76 E-value=1.3e-05 Score=94.99 Aligned_cols=121 Identities=14% Similarity=0.149 Sum_probs=87.5
Q ss_pred EEEEEEEEeecCCCCCCCCCccCccc-CCcEEEEEECCeeee-eeeeccCCCCCCeeeeEEEEEecCCc-ceEEEEEEeC
Q 003523 9 ILIVRIYGIDKLHTGCGFGSCEQIVG-TALYATVDLDKARMA-RTRMITERTSRPHWNQSFRIYCAHRV-SHVVFTIKND 85 (813)
Q Consensus 9 ~L~V~IieA~~L~~~~~~~~~~~~~~-sDPYv~v~l~~~~~~-rT~vi~~~t~nP~WNE~F~~~v~~~~-~~l~~~V~D~ 85 (813)
..+|.|++|-+|.+. +.+| +|||+.|.++++... |+..+.+ |+||++++.|.+.+.-+. ..+++.|||+
T Consensus 614 LvrVyvv~A~~L~p~-------D~ng~adpYv~l~lGk~~~~d~~~yip~-tlnPVfgkmfel~~~lp~ek~l~v~vyd~ 685 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPS-------DGNGDADPYVKLLLGKKRTLDRAHYIPN-TLNPVFGKMFELECLLPFEKDLIVEVYDH 685 (1105)
T ss_pred eEEEEEEEeeecccc-------CCCCCcCceeeeeeccchhhhhhhcCcC-CCCcHHHHHHHhhcccchhhcceeEEEEe
Confidence 468999999999875 3344 899999999987643 6778888 999999999999876554 7899999999
Q ss_pred CCCC-ceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEEEEEeeecccCcccc
Q 003523 86 NPVG-AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQFVHVVNDNSWS 145 (813)
Q Consensus 86 d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f~~~~~~~~w~ 145 (813)
|.++ |+.||+..|.+++ +|+...+......+..+..+-.+.+-+......|.
T Consensus 686 D~~~~d~~iget~iDLEn--------R~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~ 738 (1105)
T KOG1326|consen 686 DLEAQDEKIGETTIDLEN--------RWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILK 738 (1105)
T ss_pred ecccccchhhceehhhhh--------cccCcCCcccCccceeeeeccccccCccCHHHHHH
Confidence 9988 7899999999863 56666554322222334444444444433333343
No 155
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.75 E-value=1.8e-05 Score=94.80 Aligned_cols=104 Identities=13% Similarity=0.148 Sum_probs=81.9
Q ss_pred cceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEEC----CeeeeeeeeccCCCCCCeeeeEEE---EEecCCc-ce
Q 003523 6 LHGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLD----KARMARTRMITERTSRPHWNQSFR---IYCAHRV-SH 77 (813)
Q Consensus 6 l~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~----~~~~~rT~vi~~~t~nP~WNE~F~---~~v~~~~-~~ 77 (813)
-.|+|.|-|.-||+|+-- .+..-+||||+.+|- ++.+.||||+.+ |.||.+||... ++..... ..
T Consensus 1522 ~~~~LtImV~H~K~L~~L------qdg~~P~pyVK~YLlPdp~k~sKRKTKvvrk-t~~PTfnE~LvY~g~p~~~l~qRe 1594 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALL------QDGQDPDPYVKTYLLPDPRKTSKRKTKVVRK-TRNPTFNEMLVYDGFPKEILQQRE 1594 (1639)
T ss_pred cCceEEEEhhhhcccccc------cCCCCCCcceeEEecCCchHhhhhhhccccc-cCCCchhhheeecCCchhhhhhhe
Confidence 368999999999999621 122338999999994 344569999999 99999999843 4444333 67
Q ss_pred EEEEEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEcc
Q 003523 78 VVFTIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIR 116 (813)
Q Consensus 78 l~~~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 116 (813)
|.++|+..+... +.++|.+.|||.++.--++.-+||+|-
T Consensus 1595 LQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1595 LQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred eeeeeecccceeeeeeeeeeecchhhcchhhhhcceeecc
Confidence 999999988776 679999999999887766666999994
No 156
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=1e-05 Score=85.69 Aligned_cols=200 Identities=11% Similarity=0.073 Sum_probs=120.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCccCccc-CCcEEEEEECC----eeeeeeeeccCCCCCCeeeeE--EEEEecCCc--ceE
Q 003523 8 GILIVRIYGIDKLHTGCGFGSCEQIVG-TALYATVDLDK----ARMARTRMITERTSRPHWNQS--FRIYCAHRV--SHV 78 (813)
Q Consensus 8 G~L~V~IieA~~L~~~~~~~~~~~~~~-sDPYv~v~l~~----~~~~rT~vi~~~t~nP~WNE~--F~~~v~~~~--~~l 78 (813)
-+|+.||..|++|+++ +..+ .|||++..+.. ....||++..+ ++||.|||+ +.+...+.. ..+
T Consensus 93 ~~~~~tl~~a~~lk~~-------~~~~~~d~~~~~~llpga~kl~slr~~t~~n-~lN~~w~etev~~~i~~~~~~~K~~ 164 (362)
T KOG1013|consen 93 RMLDTTLDRAKGLKPM-------DINGLADPYVKLHLLPGAGKLNSLRTKTTRN-TLNPEWNETEVYEGITDDDTHLKVL 164 (362)
T ss_pred hhcceeechhcccchh-------hhhhhcchHHhhhcccchhhhhhhhHHhhcc-CcCcceeccceecccccchhhhhhh
Confidence 3578999999999875 3333 89999999943 22347888888 999999997 444444433 568
Q ss_pred EEEEEeCCCCC-ceeEEEEEEecccccCCc--eeeeEEEccCC----CCCcCCCCCeEEEEEEeeecccCcccccccCCC
Q 003523 79 VFTIKNDNPVG-AILIGRAYVPVEDVAKEF--VIDRSFDIRDE----EYKNIPGGSKIHVMLQFVHVVNDNSWSRGIRSR 151 (813)
Q Consensus 79 ~~~V~D~d~~g-~~~IG~~~ipl~~l~~g~--~~~~w~~L~~~----~gk~~~~~g~l~l~l~f~~~~~~~~w~~gi~~~ 151 (813)
.+.|+|++.+. ++++|+..+++..|.+-+ ....|+.-.-+ +....+..|+|.+++.|............-...
T Consensus 165 Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~~l~vt~iRc~~ 244 (362)
T KOG1013|consen 165 RKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTTPGLIVTIIRCSH 244 (362)
T ss_pred heeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCCCceEEEEEEeee
Confidence 89999999988 689999999999888733 23445443222 111246789999999998765544322111000
Q ss_pred --CCCCCCC--CccccccccCcEEEEeeeccCCCCCCCCcccCCCCcccchhhHHHHHHHHHhcccEEEEEEeccCC
Q 003523 152 --PYDYEGV--PYTYFGQRQGCKVTLYQDAHVLDDFKPKIPLSNGEYYESHRCWEDIFDAIASAEHFIYMTGWSMYA 224 (813)
Q Consensus 152 --~~~~~~~--~~~~~p~~~gn~v~l~~d~~~~~~~~p~~~~~~g~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~ 224 (813)
-.+..|. |..-.-.+.++.+. +...-+.-..+.+..|.++-+|+-=--.| |.+.+-|..|..++
T Consensus 245 l~ssDsng~sDpyvS~~l~pdv~~~-------fkkKt~~~K~t~~p~fd~~~~~~i~pgdL--a~~kv~lsvgd~~~ 312 (362)
T KOG1013|consen 245 LASSDSNGYSDPYVSQRLSPDVGKK-------FKKKTQQKKKTLNPEFDEEFFYDIGPGDL--AYKKVALSVGDYDI 312 (362)
T ss_pred eeccccCCCCCccceeecCCCcchh-------hcccCcchhccCCccccccccccCCccch--hcceEEEeecccCC
Confidence 0111111 11111111222211 12223333444555555444444333334 89999999997543
No 157
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=97.64 E-value=0.00044 Score=73.40 Aligned_cols=189 Identities=17% Similarity=0.184 Sum_probs=112.2
Q ss_pred EEEeeecccCcccccccCCCCCCCCCCCccccccccCcEEEEeeeccCCCCCCCCcccCCCCcccchhhHHHHHHHHHhc
Q 003523 132 MLQFVHVVNDNSWSRGIRSRPYDYEGVPYTYFGQRQGCKVTLYQDAHVLDDFKPKIPLSNGEYYESHRCWEDIFDAIASA 211 (813)
Q Consensus 132 ~l~f~~~~~~~~w~~gi~~~~~~~~~~~~~~~p~~~gn~v~l~~d~~~~~~~~p~~~~~~g~~~~~~~~~~~l~~aI~~A 211 (813)
+.+|.|...+. +.|.--.|+|. -...+.-.+|++|..- +..-.| .+-+.+-..|.+|
T Consensus 90 S~TYwP~~SD~-------~~P~LdLGWP~-~~~~~g~Tr~~vy~qP--p~~~~p-------------~IKE~vR~~I~~A 146 (284)
T PF07894_consen 90 SGTYWPMQSDT-------EPPPLDLGWPE-TPSYKGVTRATVYFQP--PKDGQP-------------HIKEVVRRMIQQA 146 (284)
T ss_pred CcccCCCcCCC-------CCCCCCCCCCC-CCcccCCceEEEEeCC--CCCCCC-------------CHHHHHHHHHHHh
Confidence 67788854432 11344568886 2223444789999862 111111 3668999999999
Q ss_pred ccEEEEEEeccCCceeEecCCCCCCCCCCchhhhhhHHHHHHHHHHHHHcCCeEEEEEecCCCCcccccccCcCCCCcHH
Q 003523 212 EHFIYMTGWSMYAPITLLRDPRRIKPKGNITAEEMLKTTLGDLLKKKADEGVKVLLLIWDDRTSVDILKEDGLMGTHDEE 291 (813)
Q Consensus 212 k~~I~I~~w~~~~~~~L~r~~~~~~~g~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~~~~g~~~t~~~~ 291 (813)
++.|-|..=.|+ | . .-|.++|..+-+|||-|+||+ |..+...++.+..-+.-+
T Consensus 147 ~kVIAIVMD~FT-------D---------~-------dIf~DLleAa~kR~VpVYiLL-D~~~~~~Fl~Mc~~~~v~--- 199 (284)
T PF07894_consen 147 QKVIAIVMDVFT-------D---------V-------DIFCDLLEAANKRGVPVYILL-DEQNLPHFLEMCEKLGVN--- 199 (284)
T ss_pred cceeEEEeeccc-------c---------H-------HHHHHHHHHHHhcCCcEEEEe-chhcChHHHHHHHHCCCC---
Confidence 999999864332 1 1 056676666559999999999 987654332211001111
Q ss_pred HHHHHhcCCCEEEEcCCCCCccccccccccccccccccceEEEcCCCCCCCCCcceeEEEEccccCCCccccCCCccccc
Q 003523 292 TADYFRKTKVRCVLCPRTSEIFTNIRGYQTSSIFTHHQKTVVVDSEVPGGGTQKRRVVSFVGGIDLCDGRYDTQEHSLFR 371 (813)
Q Consensus 292 ~~~~l~~~gV~~~~~~~~p~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~nl~~~r~Dt~~H~~~~ 371 (813)
...+++ ++++...- ..+........-+..|+|+++||++ .+..|+.=+++. +..-|
T Consensus 200 -~~~~~n--mrVRsv~G----~~y~~rsg~k~~G~~~eKF~lvD~~-----------~V~~GSYSFtWs--~~~~~---- 255 (284)
T PF07894_consen 200 -LQHLKN--MRVRSVTG----CTYYSRSGKKFKGQLKEKFMLVDGD-----------KVISGSYSFTWS--SSRVH---- 255 (284)
T ss_pred -hhhcCC--eEEEEecC----CeeecCCCCeeeCcccceeEEEecc-----------cccccccceeec--ccccc----
Confidence 123343 33332210 0111111123457899999999999 889998776643 11111
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCccccceeeeChHHHHHHHHHHHHH
Q 003523 372 TLKTIHRDDFHQPNFPGSSIEKGGPREPWHDIHCKLEGPVAWDVLYNFEQRW 423 (813)
Q Consensus 372 ~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhD~~~~i~Gpaa~dl~~~F~~rW 423 (813)
+-+-..++|.+|....+.|+.-.
T Consensus 256 -----------------------------r~~~~~~tGq~Ve~FD~EFR~Ly 278 (284)
T PF07894_consen 256 -----------------------------RNLVTVLTGQIVESFDEEFRELY 278 (284)
T ss_pred -----------------------------cceeEEEeccccchHhHHHHHHH
Confidence 23567799999999888887643
No 158
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=97.52 E-value=7.4e-05 Score=51.33 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=23.0
Q ss_pred cccccceEEEcCCCCCCCCCcceeEEEEccccCCCc
Q 003523 325 FTHHQKTVVVDSEVPGGGTQKRRVVSFVGGIDLCDG 360 (813)
Q Consensus 325 ~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~nl~~~ 360 (813)
.++|+|++|||++ .+|+||.|++..
T Consensus 3 ~~~H~K~~v~D~~-----------~~~iGs~N~~~~ 27 (28)
T smart00155 3 GVLHTKLMIVDDE-----------IAYIGSANLDGR 27 (28)
T ss_pred CcEEeEEEEEcCC-----------EEEEeCccCCCC
Confidence 5799999999999 999999999864
No 159
>PF13918 PLDc_3: PLD-like domain
Probab=97.51 E-value=0.00055 Score=67.92 Aligned_cols=69 Identities=29% Similarity=0.446 Sum_probs=50.5
Q ss_pred CCCcccCCCCcccchhhHHHHHHHHHhcccEEEEEEeccCCceeEecCCCCCCCCCCchhhhhhHHHHHHHHHHHH-HcC
Q 003523 184 KPKIPLSNGEYYESHRCWEDIFDAIASAEHFIYMTGWSMYAPITLLRDPRRIKPKGNITAEEMLKTTLGDLLKKKA-DEG 262 (813)
Q Consensus 184 ~p~~~~~~g~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~g~~~~~~~~~~~~l~~lL~~kA-~rG 262 (813)
.|+.-...|+... .++|+..|++|+++|||+-..+.|-+ ....+. .+|..|.++|++|| +||
T Consensus 71 SPp~~~~~gRT~D----ldAIl~~I~~A~~fI~IsVMdY~P~~-~~~~~~------------~YWP~ID~ALR~AA~~R~ 133 (177)
T PF13918_consen 71 SPPPFCPKGRTLD----LDAILSVIDSAKKFIYISVMDYLPTS-RYSKPN------------RYWPVIDDALRRAAIERG 133 (177)
T ss_pred CCcccCCCCCCcH----HHHHHHHHHhHhheEEEEEeecCCee-ecCCCC------------CcchhHHHHHHHHHHHcC
Confidence 3444444555432 67999999999999999999888833 222222 23448999999987 899
Q ss_pred CeEEEEE
Q 003523 263 VKVLLLI 269 (813)
Q Consensus 263 V~VriLv 269 (813)
|+||+|+
T Consensus 134 V~VRlLI 140 (177)
T PF13918_consen 134 VKVRLLI 140 (177)
T ss_pred CeEEEEE
Confidence 9999999
No 160
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.00033 Score=79.36 Aligned_cols=100 Identities=15% Similarity=0.177 Sum_probs=79.1
Q ss_pred EEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEEC------CeeeeeeeeccCCCCCCeeeeEEEEEecCCc----ceE
Q 003523 9 ILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLD------KARMARTRMITERTSRPHWNQSFRIYCAHRV----SHV 78 (813)
Q Consensus 9 ~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~------~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~----~~l 78 (813)
.++|+|+.|.+|+=- .++--.|||.|.+- +++..-|+...| +-.|.+||+|+|.+.... =.|
T Consensus 1126 kvtvkvvaandlkwq-------tsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsn-nWaPKyNEtF~f~Lg~e~~Pe~YEL 1197 (1283)
T KOG1011|consen 1126 KVTVKVVAANDLKWQ-------TSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSN-NWAPKYNETFHFFLGNEGGPEHYEL 1197 (1283)
T ss_pred eEEEEEEecccccch-------hccccccceEEEEecCcccchhhhccccccCC-CcCcccCceeEEEeccCCCCceEEE
Confidence 478889999999621 11116899999993 355567888877 999999999999986543 368
Q ss_pred EEEEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEcc
Q 003523 79 VFTIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIR 116 (813)
Q Consensus 79 ~~~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 116 (813)
.|.|+|+.... |..+|.+.++|.++.....--.|+||.
T Consensus 1198 ~~~VKDYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLg 1236 (1283)
T KOG1011|consen 1198 QFCVKDYCFAREDRVVGLAVLQLRSVADKGSCACWVPLG 1236 (1283)
T ss_pred EEeehhheeecccceeeeeeeehhhHhhcCceeEeeecc
Confidence 89999998877 569999999999999765567899994
No 161
>PLN02964 phosphatidylserine decarboxylase
Probab=97.41 E-value=0.0002 Score=84.51 Aligned_cols=101 Identities=16% Similarity=0.261 Sum_probs=78.4
Q ss_pred cceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCC-cceEEEEEEe
Q 003523 6 LHGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHR-VSHVVFTIKN 84 (813)
Q Consensus 6 l~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~-~~~l~~~V~D 84 (813)
+.|...|||++|+ .. . +|||..+-.-+.++.||.+.++ |+||+|||...|.+... .....|.|+|
T Consensus 52 ~~~~~~~~~~~~~-~~-----------~-~~~~~~~~~~g~~~f~t~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 117 (644)
T PLN02964 52 FSGIALLTLVGAE-MK-----------F-KDKWLACVSFGEQTFRTETSDS-TDKPVWNSEKKLLLEKNGPHLARISVFE 117 (644)
T ss_pred ccCeEEEEeehhh-hc-----------c-CCcEEEEEEecceeeeeccccc-cCCcccchhhceEeccCCcceEEEEEEe
Confidence 5789999999997 11 1 5898886666666679999999 99999999988887543 3557999999
Q ss_pred CCCCC-ceeEEEEEEecccccCCceeeeE--EEccCCCC
Q 003523 85 DNPVG-AILIGRAYVPVEDVAKEFVIDRS--FDIRDEEY 120 (813)
Q Consensus 85 ~d~~g-~~~IG~~~ipl~~l~~g~~~~~w--~~L~~~~g 120 (813)
++.++ ++++|.+.+++.++...+..+.| |.++++++
T Consensus 118 ~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dg 156 (644)
T PLN02964 118 TNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSS 156 (644)
T ss_pred cCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCC
Confidence 99988 68999999999888865432222 66777664
No 162
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.00019 Score=76.36 Aligned_cols=101 Identities=16% Similarity=0.093 Sum_probs=75.2
Q ss_pred cceEEEEEEEEeecCCCCCCCCCccCccc-CCcEEEEEECC----eeeeeeeeccCCCCCCeeeeEEEEEecCC---cce
Q 003523 6 LHGILIVRIYGIDKLHTGCGFGSCEQIVG-TALYATVDLDK----ARMARTRMITERTSRPHWNQSFRIYCAHR---VSH 77 (813)
Q Consensus 6 l~G~L~V~IieA~~L~~~~~~~~~~~~~~-sDPYv~v~l~~----~~~~rT~vi~~~t~nP~WNE~F~~~v~~~---~~~ 77 (813)
..+-|.|+|+.+..|..+ +.++ +||||.+++.. .-..||++.++ |.||++||+|.+.+.+. ...
T Consensus 231 ~~~~l~vt~iRc~~l~ss-------Dsng~sDpyvS~~l~pdv~~~fkkKt~~~K~-t~~p~fd~~~~~~i~pgdLa~~k 302 (362)
T KOG1013|consen 231 TTPGLIVTIIRCSHLASS-------DSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK-TLNPEFDEEFFYDIGPGDLAYKK 302 (362)
T ss_pred CCCceEEEEEEeeeeecc-------ccCCCCCccceeecCCCcchhhcccCcchhc-cCCccccccccccCCccchhcce
Confidence 346689999999999764 3444 99999999953 33458999998 99999999999887653 267
Q ss_pred EEEEEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEcc
Q 003523 78 VVFTIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIR 116 (813)
Q Consensus 78 l~~~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 116 (813)
+.|.|+|.+.-+ .+++|-.....- ..+...++|+...
T Consensus 303 v~lsvgd~~~G~s~d~~GG~~~g~~--rr~~v~~h~gr~~ 340 (362)
T KOG1013|consen 303 VALSVGDYDIGKSNDSIGGSMLGGY--RRGEVHKHWGRCL 340 (362)
T ss_pred EEEeecccCCCcCccCCCccccccc--ccchhhcCccccc
Confidence 999999999875 689987554332 3355566776554
No 163
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=97.38 E-value=0.011 Score=64.71 Aligned_cols=128 Identities=15% Similarity=0.152 Sum_probs=74.9
Q ss_pred chhhHHHHHHHHHhcccEEEEEEeccCCceeEecCCCCCCCCCCchhhhhhHHHHHHHHHHHHHc--CCeEEEEEecCC-
Q 003523 197 SHRCWEDIFDAIASAEHFIYMTGWSMYAPITLLRDPRRIKPKGNITAEEMLKTTLGDLLKKKADE--GVKVLLLIWDDR- 273 (813)
Q Consensus 197 ~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~g~~~~~~~~~~~~l~~lL~~kA~r--GV~VriLvwD~~- 273 (813)
|.++|+.+...|.+|++.|+|++ +||-. . . ..+.+.|..+-+. -.+|.||+ |..
T Consensus 37 p~~fy~~lk~~I~~aq~Ri~las------LYlG~---~-----E--------~elv~cl~~aL~~~~~L~v~iLl-D~~r 93 (469)
T KOG3964|consen 37 PPEFYQRLKKLIKKAQRRIFLAS------LYLGK---L-----E--------RELVDCLSNALEKNPSLKVSILL-DFLR 93 (469)
T ss_pred CHHHHHHHHHHHHHhhheeeeee------eccch---h-----H--------HHHHHHHHHHhccCCCcEEEeeh-hhhh
Confidence 46789999999999999999997 34521 1 1 2677777777654 78999998 874
Q ss_pred CCcccccccCcCCCCcHHHHHHHhcCCCEEEEcCCCCC--cc--ccccccccccccccccceEEEcCCCCCCCCCcceeE
Q 003523 274 TSVDILKEDGLMGTHDEETADYFRKTKVRCVLCPRTSE--IF--TNIRGYQTSSIFTHHQKTVVVDSEVPGGGTQKRRVV 349 (813)
Q Consensus 274 ~s~~~~~~~g~~~t~~~~~~~~l~~~gV~~~~~~~~p~--~~--~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~~v 349 (813)
++..+..... |-....-.+++. ..|.|.++.. |. +. .++........+..|-|+.-+|++
T Consensus 94 gtr~~~~~~s-~llp~~l~kkf~--e~vd~~lyht-p~Lrg~~k~Lvp~rfneg~GlQhmKIy~fdde------------ 157 (469)
T KOG3964|consen 94 GTRELPNSCS-ALLPVWLGKKFP--ERVDESLYHT-PFLRGLSKSLVPARFNEGLGLQHMKIYGFDDE------------ 157 (469)
T ss_pred hcccCcccch-hhchHHHhhhhh--hhhceeeecC-hhhhhhhhhcCchhhccccchhhhhhhcccHh------------
Confidence 2222111000 000000111222 2466666542 32 10 111001112356789999999996
Q ss_pred EEEccccCCCcccc
Q 003523 350 SFVGGIDLCDGRYD 363 (813)
Q Consensus 350 afvGG~nl~~~r~D 363 (813)
..+-|.|++.+|+-
T Consensus 158 viiSGanls~dyfT 171 (469)
T KOG3964|consen 158 VIISGANLSNDYFT 171 (469)
T ss_pred hhcccccchhhhhc
Confidence 47889999998553
No 164
>PLN02866 phospholipase D
Probab=97.29 E-value=0.0013 Score=80.27 Aligned_cols=62 Identities=21% Similarity=0.235 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHhccceEEEeeccccccccCccccccccchhhhhccchHHHHHHHHHHHHcCCCeEEEEEec
Q 003523 494 RSIQDAYINAIRRAKNFIYIENQYFIGSSYGWLSKDIRVEDINALQLIPKELSLKIVSKIEAGEDFRVYIVIP 566 (813)
Q Consensus 494 ~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~~~~~~~~~~~~~~~n~i~~~~a~~i~~a~~~g~~v~V~IvlP 566 (813)
.+...++.++|.+||++|||+.=.|.+..+.+.+ +.. -++..+...|.+|+++| |+|+|++=
T Consensus 343 ~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp--------~~D-~~g~RL~~lL~rKAkrG--VkVrVLLy 404 (1068)
T PLN02866 343 HAAFEAIASAIENAKSEIFITGWWLCPELYLRRP--------FHD-HESSRLDSLLEAKAKQG--VQIYILLY 404 (1068)
T ss_pred HHHHHHHHHHHHhcccEEEEEEccCCceEEEEec--------CCC-chHHHHHHHHHHHHHCC--CEEEEEEE
Confidence 5778999999999999999965433322222110 000 13567888899999999 99998743
No 165
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.00028 Score=76.28 Aligned_cols=107 Identities=17% Similarity=0.091 Sum_probs=82.3
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEEC--Ce--eeeeeeeccCCCCCCeeeeEEEEEecCCcceEEEEE
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLD--KA--RMARTRMITERTSRPHWNQSFRIYCAHRVSHVVFTI 82 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~--~~--~~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~~V 82 (813)
.|.|+|.|++|++|..+.+.+. .++|||+|++= +. ...||+...+ |++|-+-+...|.-..+...|.++|
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k~-----~~apyVkVYlL~~g~c~ak~ktk~A~k-T~~plyqq~l~f~~sp~~k~Lq~tv 341 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSKS-----LPAPYVKVYLLENGFCIAKKKTKSARK-TLDPLYQQQLSFDQSPPGKYLQGTV 341 (405)
T ss_pred cCceeEEEEecccccccCCccc-----ccCceeEEEEcCCCceecccccccccc-cCchhhhhhhhhccCCCccEEEEEE
Confidence 4899999999999987533221 38999999993 32 2347998888 9888777777777666778899999
Q ss_pred Ee-CCCCC-ceeEEEEEEecccccCCc-eeeeEEEccCCC
Q 003523 83 KN-DNPVG-AILIGRAYVPVEDVAKEF-VIDRSFDIRDEE 119 (813)
Q Consensus 83 ~D-~d~~g-~~~IG~~~ipl~~l~~g~-~~~~w~~L~~~~ 119 (813)
+- ...+- +.|+|.+.|-+.+|.-+. .+-.||+|....
T Consensus 342 ~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 342 WGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred eccccccchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 84 44444 479999999999887655 677899998754
No 166
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=96.52 E-value=0.08 Score=50.97 Aligned_cols=121 Identities=12% Similarity=0.269 Sum_probs=85.0
Q ss_pred EEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCee--eeeeeeccCCCCCCeeeeEEEEEec----C-----Ccce
Q 003523 9 ILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKAR--MARTRMITERTSRPHWNQSFRIYCA----H-----RVSH 77 (813)
Q Consensus 9 ~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~--~~rT~vi~~~t~nP~WNE~F~~~v~----~-----~~~~ 77 (813)
.+.|+|.+..++|.. ..--||+...++.. .++|.......-.=.|||+|.++|. . ....
T Consensus 8 ~~~l~i~~l~~~p~~----------~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~ 77 (143)
T PF10358_consen 8 QFDLTIHELENLPSS----------NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKE 77 (143)
T ss_pred EEEEEEEEeECcCCC----------CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEE
Confidence 478999999999852 12344444445544 3566665544667799999999873 1 1246
Q ss_pred EEEEEEeCCCCCc-eeEEEEEEecccccCC--ceeeeEEEccCCCCCcCCCCCeEEEEEEeeecccCcc
Q 003523 78 VVFTIKNDNPVGA-ILIGRAYVPVEDVAKE--FVIDRSFDIRDEEYKNIPGGSKIHVMLQFVHVVNDNS 143 (813)
Q Consensus 78 l~~~V~D~d~~g~-~~IG~~~ipl~~l~~g--~~~~~w~~L~~~~gk~~~~~g~l~l~l~f~~~~~~~~ 143 (813)
+.|+|+....-+. ..+|.+.|.|.++++- .....-++|... .+..+.|++.+++.++..+++
T Consensus 78 ~~~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~~~~~~~~ 142 (143)
T PF10358_consen 78 LKFSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATLSISISLSELREDPD 142 (143)
T ss_pred EEEEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEEEEEEEEEECccCCC
Confidence 8899988754444 5999999999999973 456667777543 136789999999999777654
No 167
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=96.38 E-value=0.0028 Score=55.14 Aligned_cols=96 Identities=13% Similarity=0.169 Sum_probs=66.8
Q ss_pred EEEEEEeecCCCCCCCCCccCcccCCcEEE--EEECCeeeeeeeeccCCCCCCeeeeEEEEEecCC---cceEEEEEEeC
Q 003523 11 IVRIYGIDKLHTGCGFGSCEQIVGTALYAT--VDLDKARMARTRMITERTSRPHWNQSFRIYCAHR---VSHVVFTIKND 85 (813)
Q Consensus 11 ~V~IieA~~L~~~~~~~~~~~~~~sDPYv~--v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~---~~~l~~~V~D~ 85 (813)
=||++.+++|.=. .+. .-...-|++ +.|.+....||++... ..||+++|+|.|.++-. ...|.|.|+.
T Consensus 2 witv~~c~d~s~~--~~~---~e~~~i~ikg~~tl~kpv~~KsS~rrg-s~d~~f~ETFVFqi~l~qL~~V~L~fsv~~- 74 (103)
T cd08684 2 WITVLKCKDLSWP--SSC---GENPTIYIKGILTLPKPVHFKSSAKEG-SNDIEFMETFVFAIKLQNLQTVRLVFKIQT- 74 (103)
T ss_pred EEEEEEecccccc--ccc---CcCCeeEEEEEEecCCCccccchhhcC-CCChhHHHHHHHHHHHhhccceEEEEEeec-
Confidence 3789999998621 010 011344555 5667766779998877 99999999999987642 3567788887
Q ss_pred CCCC-ceeEEEEEEecccccCCceeeeEEEc
Q 003523 86 NPVG-AILIGRAYVPVEDVAKEFVIDRSFDI 115 (813)
Q Consensus 86 d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L 115 (813)
... ...||.+++.+.++. .++.++|.++
T Consensus 75 -~~~RKe~iG~~sL~l~s~g-eeE~~HW~e~ 103 (103)
T cd08684 75 -QTPRKRTIGECSLSLRTLS-TQETDHWLEI 103 (103)
T ss_pred -cCCccceeeEEEeecccCC-HHHhhhhhcC
Confidence 333 579999999998765 3456788764
No 168
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=96.23 E-value=0.029 Score=59.80 Aligned_cols=123 Identities=19% Similarity=0.283 Sum_probs=78.8
Q ss_pred hhHHHHHHHHHHHhccceEEEeeccccccccCccccccccchhhhhccchHHHHHHHHHHH-HcCCCeEEEEEecCCCCC
Q 003523 493 DRSIQDAYINAIRRAKNFIYIENQYFIGSSYGWLSKDIRVEDINALQLIPKELSLKIVSKI-EAGEDFRVYIVIPMWPEG 571 (813)
Q Consensus 493 ~~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~~~~~~~~~~~~~~~n~i~~~~a~~i~~a~-~~g~~v~V~IvlP~~p~g 571 (813)
..+|.+...++|++|++-|=|..--|+. .+|..-|.+|+ +|+ |-|||++..
T Consensus 132 ~p~IKE~vR~~I~~A~kVIAIVMD~FTD----------------------~dIf~DLleAa~kR~--VpVYiLLD~---- 183 (284)
T PF07894_consen 132 QPHIKEVVRRMIQQAQKVIAIVMDVFTD----------------------VDIFCDLLEAANKRG--VPVYILLDE---- 183 (284)
T ss_pred CCCHHHHHHHHHHHhcceeEEEeecccc----------------------HHHHHHHHHHHHhcC--CcEEEEech----
Confidence 4689999999999999999999888862 24556677777 788 899999985
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCceEEeecCCccccccCCCCCCCCCCchHHHHHhhccceE
Q 003523 572 VPESASVQAILGWQRRTIEMMYADVAQAIQKKGLDDAYPRDYLTFFCLGNRENIEEYNPEQSSESNSDYYKAQKARRFMI 651 (813)
Q Consensus 572 ~~~~~~~~~i~~~~~~t~~~~~~~i~~~L~~~gv~~~~~~~yl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 651 (813)
..++.++ +.-.+.++...+ ...+++-+++- ..|.. ...+.+.+
T Consensus 184 ----~~~~~Fl---------------~Mc~~~~v~~~~-~~nmrVRsv~G----~~y~~-------------rsg~k~~G 226 (284)
T PF07894_consen 184 ----QNLPHFL---------------EMCEKLGVNLQH-LKNMRVRSVTG----CTYYS-------------RSGKKFKG 226 (284)
T ss_pred ----hcChHHH---------------HHHHHCCCChhh-cCCeEEEEecC----Ceeec-------------CCCCeeeC
Confidence 1222222 222334444321 11122211110 01111 01123456
Q ss_pred EEeeeEEEEeceEEEEcccccCcccccCC
Q 003523 652 YVHSKMMIVDDEYIIIGSANINQRSMDGA 680 (813)
Q Consensus 652 yvHsK~mIVDD~~~~iGSaNin~RS~~~~ 680 (813)
-+|.|+||||.+.++.||.-+.+-|-..+
T Consensus 227 ~~~eKF~lvD~~~V~~GSYSFtWs~~~~~ 255 (284)
T PF07894_consen 227 QLKEKFMLVDGDKVISGSYSFTWSSSRVH 255 (284)
T ss_pred cccceeEEEecccccccccceeecccccc
Confidence 89999999999999999999998887544
No 169
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=96.22 E-value=1.5 Score=48.28 Aligned_cols=136 Identities=17% Similarity=0.227 Sum_probs=78.6
Q ss_pred hHHHHHHHHHhcc-----cEEEEEEeccCCceeEecCCCCCCCCCCchhhhhhHHHHHHHHHHHHHcCCeEEEEEecCCC
Q 003523 200 CWEDIFDAIASAE-----HFIYMTGWSMYAPITLLRDPRRIKPKGNITAEEMLKTTLGDLLKKKADEGVKVLLLIWDDRT 274 (813)
Q Consensus 200 ~~~~l~~aI~~Ak-----~~I~I~~w~~~~~~~L~r~~~~~~~g~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~ 274 (813)
.|+.+.+.|++|- .+|-|+-|.+.. .. .+.++|.+||+.|-+|.++| .-..
T Consensus 19 sf~~vv~fl~eAA~DP~V~aIk~TLYR~a~---------------~S--------~iv~aLi~AA~nGK~Vtv~v-ELkA 74 (352)
T PF13090_consen 19 SFDPVVDFLREAAEDPDVLAIKITLYRVAS---------------NS--------PIVNALIEAAENGKQVTVLV-ELKA 74 (352)
T ss_dssp -TCHHHHHHHHHCC-TTEEEEEEEESSS-T---------------T---------HHHHHHHHHHHTT-EEEEEE-STTS
T ss_pred ccHHHHHHHHHHhcCCCccEEEEEEEecCC---------------CC--------HHHHHHHHHHHcCCEEEEEE-EEec
Confidence 4567888888884 467777664421 22 89999999999999999998 3321
Q ss_pred CcccccccCcCCCCcHHHHHHHhcCCCEEEEcCCCCCccccccccccccccccccceEEEcCCCCCCCCCcceeEEEEcc
Q 003523 275 SVDILKEDGLMGTHDEETADYFRKTKVRCVLCPRTSEIFTNIRGYQTSSIFTHHQKTVVVDSEVPGGGTQKRRVVSFVGG 354 (813)
Q Consensus 275 s~~~~~~~g~~~t~~~~~~~~l~~~gV~~~~~~~~p~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~~vafvGG 354 (813)
-+. . ..+-.+.+.|+++||+|..-- | .+--|.|+++|=.+..+ +-+-.+++|.
T Consensus 75 RFD--E------e~Ni~Wa~~Le~aGv~ViyG~--~-------------glKvHaK~~lI~R~e~~----~~~~Y~hlgT 127 (352)
T PF13090_consen 75 RFD--E------ENNIHWAKRLEEAGVHVIYGV--P-------------GLKVHAKICLIVRREGG----GLRRYAHLGT 127 (352)
T ss_dssp SST--T------CCCCCCCHHHHHCT-EEEE----T-------------T-EE--EEEEEEEEETT----EEEEEEEEES
T ss_pred ccc--H------HHHhHHHhhHHhcCeEEEcCC--C-------------ChhheeeEEEEEEEeCC----cEEEEEEEcC
Confidence 110 0 001134678999999986421 2 24569999998665221 2233666666
Q ss_pred ccCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCccccceeeeCh-HHHHHHHHHHH
Q 003523 355 IDLCDGRYDTQEHSLFRTLKTIHRDDFHQPNFPGSSIEKGGPREPWHDIHCKLEGP-VAWDVLYNFEQ 421 (813)
Q Consensus 355 ~nl~~~r~Dt~~H~~~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhD~~~~i~Gp-aa~dl~~~F~~ 421 (813)
-|.... .. .-+-|+.+.-.-| .+.|+...|..
T Consensus 128 GNyNe~----------------------------------TA-r~YtD~~l~Ta~~~i~~D~~~~F~~ 160 (352)
T PF13090_consen 128 GNYNEK----------------------------------TA-RIYTDLSLFTADPEIGADVAKLFNY 160 (352)
T ss_dssp S-SSTT----------------------------------HC-CCEEEEEEEE--HHHHHHHHHHHHH
T ss_pred CCcCcc----------------------------------ch-hheecceeecCCHHHHHHHHHHHHH
Confidence 553321 11 2356777655555 78999999865
No 170
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=96.12 E-value=0.083 Score=52.69 Aligned_cols=141 Identities=18% Similarity=0.263 Sum_probs=95.3
Q ss_pred hhhHHHHHHHHHhcccEEEEEEeccCCceeEecCCCCCCCCCCchhhhhhHHHHHHHHHHHHHcCCeEEEEEecCCCCcc
Q 003523 198 HRCWEDIFDAIASAEHFIYMTGWSMYAPITLLRDPRRIKPKGNITAEEMLKTTLGDLLKKKADEGVKVLLLIWDDRTSVD 277 (813)
Q Consensus 198 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~g~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~ 277 (813)
+.....+...|+.|.+...+.+++-. + |- . -+.+.|..+..+||++|||- ++.-+.
T Consensus 38 e~il~~Li~~l~k~~ef~IsVaFit~--------s-----G~-s--------ll~~~L~d~~~Kgvkgkilt-s~Ylnf- 93 (198)
T COG3886 38 EKILPRLIDELEKADEFEISVAFITE--------S-----GL-S--------LLFDLLLDLVNKGVKGKILT-SDYLNF- 93 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEEEEeeC--------c-----cH-H--------HHHHHHHHHhcCCceEEEec-ccccCc-
Confidence 45778999999999998888766431 1 31 2 78899999999999999996 553221
Q ss_pred cccccCcCCCCcHHHHHHHhcCCCEEEEcCCCCCccccccccccccccccccceEEEcCCCCCCCCCcceeEEEEccccC
Q 003523 278 ILKEDGLMGTHDEETADYFRKTKVRCVLCPRTSEIFTNIRGYQTSSIFTHHQKTVVVDSEVPGGGTQKRRVVSFVGGIDL 357 (813)
Q Consensus 278 ~~~~~g~~~t~~~~~~~~l~~~gV~~~~~~~~p~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~nl 357 (813)
|++...++.+.-.+|+|+++.-. ...+|-|-.|.-... ...|+||+.||
T Consensus 94 ---------TdP~al~~Ll~~~nve~r~~~~~--------------~~~fH~KgYiFe~~~--------~~taiiGSsNl 142 (198)
T COG3886 94 ---------TDPVALRKLLMLKNVELRVSTIG--------------SANFHTKGYIFEHNT--------GITAIIGSSNL 142 (198)
T ss_pred ---------cCHHHHHHHHhhhccceEEEecC--------------ccccccceeEEEecc--------eEEEEEccchh
Confidence 23344555555556887765421 246788887765442 23899999999
Q ss_pred CCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCccc-cceeeeChHHHHHHHHHHHHHhh
Q 003523 358 CDGRYDTQEHSLFRTLKTIHRDDFHQPNFPGSSIEKGGPREPWHD-IHCKLEGPVAWDVLYNFEQRWTK 425 (813)
Q Consensus 358 ~~~r~Dt~~H~~~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhD-~~~~i~Gpaa~dl~~~F~~rW~~ 425 (813)
++.=.- . -..|-- +...-.|..|..+...|+..|..
T Consensus 143 t~sALt-~-------------------------------n~Ewn~k~s~~~~g~i~~~~k~~f~r~~~~ 179 (198)
T COG3886 143 TDSALT-V-------------------------------NEEWNLKVSSSKNGDIVKEVKVTFERQFQN 179 (198)
T ss_pred hhhhcc-c-------------------------------CHHHHhhhccccccchHHHHHHHHHHHHHh
Confidence 986321 0 122322 23334688999999999999983
No 171
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=96.09 E-value=1.7 Score=51.12 Aligned_cols=96 Identities=17% Similarity=0.239 Sum_probs=62.2
Q ss_pred chhhHHHHHHHHHhccc---EEEEEEeccCCceeEecCCCCCCCCCCchhhhhhHHHHHHHHHHHHHcCCeEEEEEecCC
Q 003523 197 SHRCWEDIFDAIASAEH---FIYMTGWSMYAPITLLRDPRRIKPKGNITAEEMLKTTLGDLLKKKADEGVKVLLLIWDDR 273 (813)
Q Consensus 197 ~~~~~~~l~~aI~~Ak~---~I~I~~w~~~~~~~L~r~~~~~~~g~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~ 273 (813)
|-+.|+.+.+.|++|-. -+-| .+.|.|.+. +. .|.++|.+||+.|-+|-+|| --.
T Consensus 350 PYeSF~~Vv~fl~qAA~DP~VLAI-------KqTLYRt~~------dS--------pIV~ALi~AA~nGKqVtvlV-ELk 407 (696)
T COG0855 350 PYESFEPVVEFLRQAAADPDVLAI-------KQTLYRTSK------DS--------PIVRALIDAAENGKQVTVLV-ELK 407 (696)
T ss_pred chhhhHHHHHHHHHhhcCCCeEEE-------EEEEEecCC------CC--------HHHHHHHHHHHcCCeEEEEE-EEh
Confidence 45678889999988863 2222 134444332 23 89999999999999999998 211
Q ss_pred CCcccccccCcCCCCcHHHHHHHhcCCCEEEEcCCCCCccccccccccccccccccceEEEcCC
Q 003523 274 TSVDILKEDGLMGTHDEETADYFRKTKVRCVLCPRTSEIFTNIRGYQTSSIFTHHQKTVVVDSE 337 (813)
Q Consensus 274 ~s~~~~~~~g~~~t~~~~~~~~l~~~gV~~~~~~~~p~~~~~~~~~~~~~~~~hHqK~vVVD~~ 337 (813)
. .+ - ...+-.+.+.|.++||+|++-- ..+--|.|+++|=.+
T Consensus 408 -A-RF-D-----EE~NI~WAk~LE~AGvhVvyG~---------------~glKtHAKm~lVvRr 448 (696)
T COG0855 408 -A-RF-D-----EEANIHWAKRLERAGVHVVYGV---------------VGLKTHAKMLLVVRR 448 (696)
T ss_pred -h-hc-C-----hhhhhHHHHHHHhCCcEEEecc---------------cceeeeeeEEEEEEe
Confidence 0 01 0 0011246888999999987411 235679999887555
No 172
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.06 E-value=0.006 Score=66.74 Aligned_cols=118 Identities=16% Similarity=0.215 Sum_probs=85.4
Q ss_pred EEEEEEEeecCCCCCCCCCccCcccCCcEEEEEEC----CeeeeeeeeccCCCCCCeeeeEEEEEecC---C--------
Q 003523 10 LIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLD----KARMARTRMITERTSRPHWNQSFRIYCAH---R-------- 74 (813)
Q Consensus 10 L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~----~~~~~rT~vi~~~t~nP~WNE~F~~~v~~---~-------- 74 (813)
|++.|+.+.+++-..+ .+ -.|-||.+.+- .....||.|+++ |..|.++|.|.+.+.. .
T Consensus 369 lel~ivrg~~~pvp~g--p~----hld~fvr~efpl~nD~~qk~kt~vik~-t~SPdfde~fklni~rg~~~nr~fqR~f 441 (523)
T KOG3837|consen 369 LELAIVRGQKNPVPGG--PM----HLDQFVRLEFPLENDSRQKLKTDVIKV-TPSPDFDEDFKLNIRRGPGLNREFQRRF 441 (523)
T ss_pred hHHHHhhcccCCCCCC--ch----hHHhhhcccccccccccccCccceeeC-CCCCCcccceeeeccCCCcccHHHHHHH
Confidence 5566666666552100 01 04777777762 233469999999 9999999999998864 1
Q ss_pred -cceEEEEEEeCCCCC--ceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEEEEEeee
Q 003523 75 -VSHVVFTIKNDNPVG--AILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQFVH 137 (813)
Q Consensus 75 -~~~l~~~V~D~d~~g--~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f~~ 137 (813)
...+.|.|+.+.-+- |.++|.+.|-++.|..--++...++|.| |++. .+|+|.++++...
T Consensus 442 kr~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~D--GRK~-vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 442 KRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKD--GRKA-VGGKLEVKVRIRQ 504 (523)
T ss_pred HhcCeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccc--cccc-cCCeeEEEEEEec
Confidence 135899999987653 6799999999998887777788899975 4432 5789999998764
No 173
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=95.59 E-value=0.0027 Score=76.02 Aligned_cols=101 Identities=18% Similarity=0.140 Sum_probs=71.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEE---e---cCC----cce
Q 003523 8 GILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIY---C---AHR----VSH 77 (813)
Q Consensus 8 G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~---v---~~~----~~~ 77 (813)
--|+..|..|+.|... ++..-+|||+.|.+-++-. .|-++.+ |+||.||++..|. + +|. -..
T Consensus 206 ~~lR~yiyQar~L~a~------dk~~~sdp~a~v~f~~qs~-~T~~v~~-tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi 277 (1105)
T KOG1326|consen 206 SPLRSYIYQARALGAP------DKDDESDPDAAVEFCGQSK-ETEVVPG-TLNPTWDQTIIFDEVEIYGEAHLVLKNPPI 277 (1105)
T ss_pred hhhHHHHHHHHhhcCC------CcccCCCchhhhhcccccc-eeEeecC-cCCCCccceeeccceeecCccchhhcCCCe
Confidence 3455667777777653 2233399999999988763 7888888 9999999997664 1 121 146
Q ss_pred EEEEEEeCCCCC-ceeEEEEEEecccccCCceeeeEEEccC
Q 003523 78 VVFTIKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFDIRD 117 (813)
Q Consensus 78 l~~~V~D~d~~g-~~~IG~~~ipl~~l~~g~~~~~w~~L~~ 117 (813)
++|+|+|.|..+ ++++|+......=... ...-.|+++..
T Consensus 278 ~v~e~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~r 317 (1105)
T KOG1326|consen 278 RVFEVYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTMR 317 (1105)
T ss_pred EEEEeehhhhhchHHhhcccccceEEEec-CCccceEEeec
Confidence 899999999988 6899987764332222 22347999975
No 174
>PLN02352 phospholipase D epsilon
Probab=95.48 E-value=0.048 Score=65.54 Aligned_cols=91 Identities=20% Similarity=0.274 Sum_probs=48.1
Q ss_pred cCcEEEEeeeccCC-CCCCCCcccCCCCcccchhhHHHHHHHHHhcccEEEEEEeccCCceeEecCCCCCCCCCCchhhh
Q 003523 167 QGCKVTLYQDAHVL-DDFKPKIPLSNGEYYESHRCWEDIFDAIASAEHFIYMTGWSMYAPITLLRDPRRIKPKGNITAEE 245 (813)
Q Consensus 167 ~gn~v~l~~d~~~~-~~~~p~~~~~~g~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~g~~~~~~~ 245 (813)
..+.|+++-+-... ...+|. +. -...++.++.++||++|||+|||+.=.|-...+.+..+.. .| . ..
T Consensus 426 ~~w~VQv~RSid~~sa~~~P~-----~~-~~erSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~--~~--~--~N 493 (758)
T PLN02352 426 RNWKVQVYRSIDHVSASHMPR-----NL-PVERSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNH--CG--C--TN 493 (758)
T ss_pred CcccceEEEecCccccccCCC-----CC-chhhHHHHHHHHHHHhhhhEEEEehhhhhccccccccccc--cc--h--hc
Confidence 45788888764211 112231 11 1124689999999999999999986212111112211110 01 0 00
Q ss_pred hhHHHHHHHHHHHHH--cCCeEEEEE
Q 003523 246 MLKTTLGDLLKKKAD--EGVKVLLLI 269 (813)
Q Consensus 246 ~~~~~l~~lL~~kA~--rGV~VriLv 269 (813)
.-...|.+.|.+|.+ ++-+|.|++
T Consensus 494 ~I~~eIa~kI~~kir~~e~f~V~IVi 519 (758)
T PLN02352 494 LIPIEIALKIASKIRAKERFAVYILI 519 (758)
T ss_pred chHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 111256666666654 588888887
No 175
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=95.44 E-value=0.081 Score=46.59 Aligned_cols=84 Identities=20% Similarity=0.299 Sum_probs=65.7
Q ss_pred CCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCcceEEEEEEeCCCCCceeEEEEEEecccccCCceeeeEEE
Q 003523 35 TALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRVSHVVFTIKNDNPVGAILIGRAYVPVEDVAKEFVIDRSFD 114 (813)
Q Consensus 35 sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~~V~D~d~~g~~~IG~~~ipl~~l~~g~~~~~w~~ 114 (813)
++-.|++.|++..+++|.-.. ..+..|+++|+|.+. .+..|+|.|+=.|. ..+-|...+-|++...+. -.+
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~--~s~q~WDQ~Fti~Ld-RsRELEI~VywrD~--RslCav~~lrLEd~~~~~----~~~ 79 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP--KSNQAWDQSFTLELE-RSRELEIAVYWRDW--RSLCAVKFLKLEDERHEV----QLD 79 (98)
T ss_pred cceEEEEEEcCeEEeeccccc--cccccccceeEEEee-cccEEEEEEEEecc--hhhhhheeeEhhhhcccc----eec
Confidence 678899999999999998653 468899999999986 66799999987765 457787888888744322 223
Q ss_pred ccCCCCCcCCCCCeEEEEEEe
Q 003523 115 IRDEEYKNIPGGSKIHVMLQF 135 (813)
Q Consensus 115 L~~~~gk~~~~~g~l~l~l~f 135 (813)
| ++.|.+...+.|
T Consensus 80 l--------epqg~l~~ev~f 92 (98)
T cd08687 80 M--------EPQLCLVAELTF 92 (98)
T ss_pred c--------ccccEEEEEEEe
Confidence 3 478899999988
No 176
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=95.34 E-value=0.061 Score=64.77 Aligned_cols=138 Identities=16% Similarity=0.192 Sum_probs=71.5
Q ss_pred hhhHHHHHHHHHhcccEEEEEEeccCCceeEecCCC-CCCCCCCchhhhhhHHHHHHHHHHHH--HcCCeEEEEE--ecC
Q 003523 198 HRCWEDIFDAIASAEHFIYMTGWSMYAPITLLRDPR-RIKPKGNITAEEMLKTTLGDLLKKKA--DEGVKVLLLI--WDD 272 (813)
Q Consensus 198 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~-~~~~g~~~~~~~~~~~~l~~lL~~kA--~rGV~VriLv--wD~ 272 (813)
...-.+-+++|++|+|.|||+. .|++.... ..... . .....|.+-+.+|- .+--+|+|++ |..
T Consensus 565 ~SIq~AYv~~Ir~a~hFIYIEN------QfFi~ss~~~~~~~-n-----~v~~ela~rIv~a~ra~e~frVYIVIPL~Pg 632 (887)
T KOG1329|consen 565 DSIQNAYVKAIRNAEHFIYIEN------QFFIGSSFNWDSVL-N-----KVGDELALRIVKAIRAGEKFRVYIVIPLWPG 632 (887)
T ss_pred HHHHHHHHHHHHhccceEEEee------eeEEeeccCCCccc-c-----hHHHHHHHHHHHHHhcCCceEEEEEEeCCcc
Confidence 4567889999999999999985 33332221 10001 0 00113333334443 3457777776 552
Q ss_pred CCC------ccc-------ccccCcCCCCcHHHHHHHhcCCCEEE----EcCCCCCccccc--cccccccccccccceEE
Q 003523 273 RTS------VDI-------LKEDGLMGTHDEETADYFRKTKVRCV----LCPRTSEIFTNI--RGYQTSSIFTHHQKTVV 333 (813)
Q Consensus 273 ~~s------~~~-------~~~~g~~~t~~~~~~~~l~~~gV~~~----~~~~~p~~~~~~--~~~~~~~~~~hHqK~vV 333 (813)
+.. .++ .++ |........+.|++.|+.=. ++.- .-..... .+...+.+--=|.|++|
T Consensus 633 fEG~~~p~~~svqaIl~wQyrT---ms~g~~sI~~~Lka~g~d~~~yi~f~~l-r~~g~~e~~~~~~~~emIYVHsK~mI 708 (887)
T KOG1329|consen 633 FEGDDTPGSGSVQAILHWQYRT---MSMGYKSIYKALKAVGLDPADYIDFLGL-RCLGNREEQAQRLRREMIYVHSKLMI 708 (887)
T ss_pred ccCCCCCCcchHHHHHHHHHHH---HhhhHHHHHHHHHHhcCCccccceeeee-eeeeccccccccceEEEEEEeeeeEE
Confidence 211 110 111 11112356677887776510 0000 0000000 00011223346999999
Q ss_pred EcCCCCCCCCCcceeEEEEccccCCCccc
Q 003523 334 VDSEVPGGGTQKRRVVSFVGGIDLCDGRY 362 (813)
Q Consensus 334 VD~~~~~~~~~~~~~vafvGG~nl~~~r~ 362 (813)
||++ .+.||+.||.+.-.
T Consensus 709 vDD~-----------~vIIGSANINqRSm 726 (887)
T KOG1329|consen 709 VDDE-----------YVIIGSANINQRSM 726 (887)
T ss_pred ecCC-----------EEEEeecccchhhc
Confidence 9999 99999999998544
No 177
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.24 E-value=0.11 Score=51.16 Aligned_cols=85 Identities=13% Similarity=0.224 Sum_probs=57.4
Q ss_pred cceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEE--CCeeee---eeeeccCCCCCCeeeeEEEEEec--C--Ccc
Q 003523 6 LHGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDL--DKARMA---RTRMITERTSRPHWNQSFRIYCA--H--RVS 76 (813)
Q Consensus 6 l~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l--~~~~~~---rT~vi~~~t~nP~WNE~F~~~v~--~--~~~ 76 (813)
++..++|+|++|+++.-. ..+|-||++.| +++.+. .|+.+. ..+|.|||..+|++. + ..+
T Consensus 6 ~~~~~~v~i~~~~~~~~~---------~~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLPr~A 74 (158)
T cd08398 6 INSNLRIKILCATYVNVN---------DIDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLPRSA 74 (158)
T ss_pred CCCCeEEEEEeeccCCCC---------CcCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhcCChhh
Confidence 356789999999998732 12689999876 554443 344333 468999999777753 2 247
Q ss_pred eEEEEEEeCCCC-C----ceeEEEEEEecc
Q 003523 77 HVVFTIKNDNPV-G----AILIGRAYVPVE 101 (813)
Q Consensus 77 ~l~~~V~D~d~~-g----~~~IG~~~ipl~ 101 (813)
.|.|+|++.... + ...||.++++|=
T Consensus 75 rL~iti~~~~~~~~~k~~~~~iG~~ni~LF 104 (158)
T cd08398 75 RLCLSICSVKGRKGAKEEHCPLAWGNINLF 104 (158)
T ss_pred eEEEEEEEEecccCCCCceEEEEEEEEEEE
Confidence 899999985431 1 136888777763
No 178
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=94.72 E-value=0.06 Score=57.17 Aligned_cols=117 Identities=16% Similarity=0.220 Sum_probs=80.9
Q ss_pred cceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCcceEEEEEEeC
Q 003523 6 LHGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRVSHVVFTIKND 85 (813)
Q Consensus 6 l~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~~V~D~ 85 (813)
+.|+|-++++++++|.-... .+..+-+-||++..+.+..+||+|... ..-=.|.|+|++.+. ....+.+-||.|
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~----~kglt~~~ycVle~drqh~aRt~vrs~-~~~f~w~e~F~~Dvv-~~~vl~~lvySW 122 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQ----QKGLTVCFYCVLEPDRQHPARTRVRSS-GPGFAWAEDFKHDVV-NIEVLHYLVYSW 122 (442)
T ss_pred ccceEEEEEecccccccChh----ccCceeeeeeeeeecccCccccccccC-CCCccchhhceeecc-cceeeeEEEeec
Confidence 57999999999999974310 123457999999999998889998876 677789999999976 446788999999
Q ss_pred CCCC-ce--eEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEEEEEeee
Q 003523 86 NPVG-AI--LIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQFVH 137 (813)
Q Consensus 86 d~~g-~~--~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f~~ 137 (813)
+..- .. ..| -|.+..+. .+..++-+-| .+++.|++-+++.|..
T Consensus 123 ~pq~RHKLC~~g--~l~~~~v~-rqspd~~~Al------~lePrgq~~~r~~~~D 168 (442)
T KOG1452|consen 123 PPQRRHKLCHLG--LLEAFVVD-RQSPDRVVAL------YLEPRGQPPLRLPLAD 168 (442)
T ss_pred Cchhhccccccc--hhhhhhhh-hcCCcceeee------ecccCCCCceecccCC
Confidence 8754 33 455 22222222 1112233333 2346788888888776
No 179
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.48 E-value=0.22 Score=49.98 Aligned_cols=72 Identities=14% Similarity=0.298 Sum_probs=49.9
Q ss_pred cceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEE--CCeeee---eeeeccCCCCCCeeeeEEEEEec--C--Ccc
Q 003523 6 LHGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDL--DKARMA---RTRMITERTSRPHWNQSFRIYCA--H--RVS 76 (813)
Q Consensus 6 l~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l--~~~~~~---rT~vi~~~t~nP~WNE~F~~~v~--~--~~~ 76 (813)
++-.++|+|+++.+|.-. ...++-||++.| +++.+. .|+.+.- ..++.|||.+.|++. + ..+
T Consensus 6 ~~~~f~i~i~~~~~~~~~--------~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~-~~~~~Wnewl~F~I~i~dLPr~A 76 (173)
T cd08693 6 IEEKFSITLHKISNLNAA--------ERTMKVGVQAGLFHGGESLCKTVKTSEVSG-KNDPVWNETLEFDINVCDLPRMA 76 (173)
T ss_pred cCCCEEEEEEEeccCccC--------CCCceEEEEEEEEECCEEccCceEccccCC-CCccccceeEEcccchhcCChhH
Confidence 355789999999999731 112677888766 665443 5555554 578999999777653 2 247
Q ss_pred eEEEEEEeCC
Q 003523 77 HVVFTIKNDN 86 (813)
Q Consensus 77 ~l~~~V~D~d 86 (813)
.|.|+|++..
T Consensus 77 rLciti~~~~ 86 (173)
T cd08693 77 RLCFAIYEVS 86 (173)
T ss_pred eEEEEEEEec
Confidence 8999999854
No 180
>PLN03008 Phospholipase D delta
Probab=94.10 E-value=0.14 Score=62.08 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=24.4
Q ss_pred ccccccceEEEcCCCCCCCCCcceeEEEEccccCCCccc
Q 003523 324 IFTHHQKTVVVDSEVPGGGTQKRRVVSFVGGIDLCDGRY 362 (813)
Q Consensus 324 ~~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~nl~~~r~ 362 (813)
.---|.|++|||++ ++.||+.||...-+
T Consensus 714 ~IYvHsK~~ivDd~-----------~~~iGSaN~n~RS~ 741 (868)
T PLN03008 714 MIYVHAKGMIVDDE-----------YVLMGSANINQRSM 741 (868)
T ss_pred eEEEeeeEEEECCC-----------EEEEeccccCHhhc
Confidence 34579999999999 99999999998654
No 181
>PLN02270 phospholipase D alpha
Probab=94.08 E-value=0.15 Score=61.68 Aligned_cols=29 Identities=24% Similarity=0.460 Sum_probs=24.9
Q ss_pred ccccccceEEEcCCCCCCCCCcceeEEEEccccCCCcccc
Q 003523 324 IFTHHQKTVVVDSEVPGGGTQKRRVVSFVGGIDLCDGRYD 363 (813)
Q Consensus 324 ~~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~nl~~~r~D 363 (813)
.---|.|++|||++ .+.||+.||...-++
T Consensus 655 ~I~vH~K~~ivDd~-----------~~~iGSaN~n~rS~~ 683 (808)
T PLN02270 655 MIYVHTKMMIVDDE-----------YIIIGSANINQRSMD 683 (808)
T ss_pred eEEEeeeEEEEcCC-----------EEEEecccccccccc
Confidence 44579999999999 999999999986554
No 182
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=93.19 E-value=0.26 Score=53.99 Aligned_cols=91 Identities=16% Similarity=0.329 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHcCCCeEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCceEEeecCCcc
Q 003523 544 ELSLKIVSKIEAGEDFRVYIVIPMWPEGVPESASVQAILGWQRRTIEMMYADVAQAIQKKGLDDAYPRDYLTFFCLGNRE 623 (813)
Q Consensus 544 ~~a~~i~~a~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~~t~~~~~~~i~~~L~~~gv~~~~~~~yl~~~~l~~~~ 623 (813)
.++.+|.+|++.|+ +|.+++-...-.+-+. .+ . +.+.|+++|+++ +|++.
T Consensus 51 ~iv~aLi~AA~nGK--~Vtv~vELkARFDEe~-Ni----~------------Wa~~Le~aGv~V--------iyG~~--- 100 (352)
T PF13090_consen 51 PIVNALIEAAENGK--QVTVLVELKARFDEEN-NI----H------------WAKRLEEAGVHV--------IYGVP--- 100 (352)
T ss_dssp HHHHHHHHHHHTT---EEEEEESTTSSSTTCC-CC----C------------CCHHHHHCT-EE--------EE--T---
T ss_pred HHHHHHHHHHHcCC--EEEEEEEEeccccHHH-Hh----H------------HHhhHHhcCeEE--------EcCCC---
Confidence 57889999999995 5666665544222111 11 1 356799999976 34321
Q ss_pred ccccCCCCCCCCCCchHHHHHhhccceEEEeeeEEEEe-------ceEEEEcccccCcccccCCCCcceEEeeecC
Q 003523 624 NIEEYNPEQSSESNSDYYKAQKARRFMIYVHSKMMIVD-------DEYIIIGSANINQRSMDGARDTEIAMGAFQP 692 (813)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHsK~mIVD-------D~~~~iGSaNin~RS~~~~~DsEi~v~i~~~ 692 (813)
..-+|||+++|= -+|+-+|+-|.|...-..= |.+++..-++
T Consensus 101 --------------------------glKvHaK~~lI~R~e~~~~~~Y~hlgTGNyNe~TAr~Y--tD~~l~Ta~~ 148 (352)
T PF13090_consen 101 --------------------------GLKVHAKICLIVRREGGGLRRYAHLGTGNYNEKTARIY--TDLSLFTADP 148 (352)
T ss_dssp --------------------------T-EE--EEEEEEEEETTEEEEEEEEESS-SSTTHCCCE--EEEEEEE--H
T ss_pred --------------------------ChhheeeEEEEEEEeCCcEEEEEEEcCCCcCccchhhe--ecceeecCCH
Confidence 147999999985 3899999999999886543 5666654333
No 183
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=93.12 E-value=0.19 Score=57.83 Aligned_cols=70 Identities=16% Similarity=0.241 Sum_probs=55.1
Q ss_pred cCCcEEEEEEC-----CeeeeeeeeccCCCCCCeeeeEEEEEec-----CCcceEEEEEEeCCCCCc-eeEEEEEEeccc
Q 003523 34 GTALYATVDLD-----KARMARTRMITERTSRPHWNQSFRIYCA-----HRVSHVVFTIKNDNPVGA-ILIGRAYVPVED 102 (813)
Q Consensus 34 ~sDPYv~v~l~-----~~~~~rT~vi~~~t~nP~WNE~F~~~v~-----~~~~~l~~~V~D~d~~g~-~~IG~~~ipl~~ 102 (813)
.||||..++=. ...+.||.++++ ++||.|-+. .+++. +....+.+.++|.+.-++ ++||.+.-++++
T Consensus 156 ksd~~l~~~~~~~d~s~~~~~~tEv~~n-~l~p~w~~~-~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~ 233 (529)
T KOG1327|consen 156 KSDPYLEFYKRVDDGSTQMLYRTEVVKN-TLNPQWAPF-SISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSE 233 (529)
T ss_pred cCCcceEEEEecCCCceeeccccceecc-CCCCccccc-ccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHH
Confidence 39999997763 145679999999 999999864 34332 234678999999999885 899999999988
Q ss_pred ccC
Q 003523 103 VAK 105 (813)
Q Consensus 103 l~~ 105 (813)
+..
T Consensus 234 ~~~ 236 (529)
T KOG1327|consen 234 LQE 236 (529)
T ss_pred hcc
Confidence 863
No 184
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=92.64 E-value=0.82 Score=44.78 Aligned_cols=127 Identities=13% Similarity=0.184 Sum_probs=83.1
Q ss_pred EEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCc-------------
Q 003523 9 ILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRV------------- 75 (813)
Q Consensus 9 ~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~------------- 75 (813)
.|.|+|+.+|-.-.. ....+....+--++.+.+++++. +|+.+.- +.+|.++|.|-|++....
T Consensus 10 yL~l~vlgGkAFld~--l~~~~~~~~s~~~l~l~f~~QRF-~S~~Vp~-~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 10 YLHLRVLGGKAFLDH--LQEPEGQVCSTFTLHLHFRGQRF-RSKPVPC-ACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred EEEEEEeCchhHhhh--hhccCCCCceEEEEEEEecCceE-ecCCccc-ccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 488888888765421 00000011133445555688885 9999999 999999999999986432
Q ss_pred -ceEEEEEEeCCCCCc-eeEEEEEEecccccCCcee--eeEEEccCCCCCcCCCCCeEEEEEEeeecc
Q 003523 76 -SHVVFTIKNDNPVGA-ILIGRAYVPVEDVAKEFVI--DRSFDIRDEEYKNIPGGSKIHVMLQFVHVV 139 (813)
Q Consensus 76 -~~l~~~V~D~d~~g~-~~IG~~~ipl~~l~~g~~~--~~w~~L~~~~gk~~~~~g~l~l~l~f~~~~ 139 (813)
+.|.+.|.-.|..+. .++|+-.+.=..++..... ..-++|.+......-+.|-|.+++...|..
T Consensus 86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred CCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 467888887777764 7999988887666643222 334555543322112678999999888743
No 185
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=92.57 E-value=0.4 Score=47.40 Aligned_cols=66 Identities=21% Similarity=0.342 Sum_probs=48.5
Q ss_pred CCcEEEEEE--CCeeee---eeeeccCCCCCCeeeeEEEEEec--C--CcceEEEEEEeCCCCC-ceeEEEEEEecc
Q 003523 35 TALYATVDL--DKARMA---RTRMITERTSRPHWNQSFRIYCA--H--RVSHVVFTIKNDNPVG-AILIGRAYVPVE 101 (813)
Q Consensus 35 sDPYv~v~l--~~~~~~---rT~vi~~~t~nP~WNE~F~~~v~--~--~~~~l~~~V~D~d~~g-~~~IG~~~ipl~ 101 (813)
+|-||++.| +++.+. +|+.+.- +..+.|||...|++. + ..+.|.|+|+|.+..+ ...||.+++++=
T Consensus 30 ~~l~V~~~l~~~~~~L~~pv~T~~~~f-~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lF 105 (159)
T cd08397 30 SDLFVTCQVFDDGKPLTLPVQTSYKPF-KNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLF 105 (159)
T ss_pred CCEEEEEEEEECCEeccCcEEccccCC-CCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeE
Confidence 899999977 554432 5666665 678999999888764 2 2478999999976544 468999888873
No 186
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=92.37 E-value=0.65 Score=45.57 Aligned_cols=88 Identities=20% Similarity=0.309 Sum_probs=58.6
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEE--CCeee---eeeeeccCCCCCCeeeeEEEEEec--C--Ccce
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDL--DKARM---ARTRMITERTSRPHWNQSFRIYCA--H--RVSH 77 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l--~~~~~---~rT~vi~~~t~nP~WNE~F~~~v~--~--~~~~ 77 (813)
...++|+|.+..++... ....++-||++.| +++.. ..|+.... ..++.|||...|++. + ..+.
T Consensus 7 ~~~~~i~i~~~~~~~~~-------~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~-~~~~~Wne~l~F~i~~~~LP~~ar 78 (156)
T cd08380 7 NFNLRIKIHGITNINLL-------DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPF-STSVTWNEWLTFDILISDLPREAR 78 (156)
T ss_pred CCCeEEEEEeecccccc-------CCCceeEEEEEEEEECCEEccCceeccCCcC-CCCCcccceeEccchhhcCChhhe
Confidence 34688999998888641 1112678888866 44322 23444332 478999999877753 2 2478
Q ss_pred EEEEEEeCCCCC---ceeEEEEEEeccc
Q 003523 78 VVFTIKNDNPVG---AILIGRAYVPVED 102 (813)
Q Consensus 78 l~~~V~D~d~~g---~~~IG~~~ipl~~ 102 (813)
|.|+|++.+..+ ...||.+++++=+
T Consensus 79 L~itl~~~~~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 79 LCLSIYAVSEPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred EEEEEEEEecCCCCcceEEEEEeEEeEc
Confidence 999999876544 3699999888743
No 187
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=92.30 E-value=1.1 Score=49.55 Aligned_cols=117 Identities=9% Similarity=0.162 Sum_probs=83.9
Q ss_pred EEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCC--------cceEEEE
Q 003523 10 LIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHR--------VSHVVFT 81 (813)
Q Consensus 10 L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~--------~~~l~~~ 81 (813)
+-|.|+||++++.. -+..-.+.-.+++... -|-.+.. +..|.||...-+.|... ...|.+.
T Consensus 2 ivl~i~egr~F~~~---------~~~~~vv~a~~ng~~l-~TDpv~~-~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~ 70 (340)
T PF12416_consen 2 IVLSILEGRNFPQR---------PRHPIVVEAKFNGESL-ETDPVPH-TESPQFNTELAWECDRKALKQHRLQRTPIKLQ 70 (340)
T ss_pred EEEEEecccCCCCC---------CCccEEEEEEeCCcee-eecCCCC-CCCceeecceeeeccHHHHHHhhccCCceEEE
Confidence 56899999999853 1245677888888765 6766766 99999999988887521 2568888
Q ss_pred EEeCCC-CC-ceeEEEEEEecccc---cCC--ceeeeEEEccCCCCCcCCCCCeEEEEEEeee
Q 003523 82 IKNDNP-VG-AILIGRAYVPVEDV---AKE--FVIDRSFDIRDEEYKNIPGGSKIHVMLQFVH 137 (813)
Q Consensus 82 V~D~d~-~g-~~~IG~~~ipl~~l---~~g--~~~~~w~~L~~~~gk~~~~~g~l~l~l~f~~ 137 (813)
+|--|. .+ .+.||.+-++|... ..+ .....||+|++.+.+-.+...+|.+.+....
T Consensus 71 c~a~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~ 133 (340)
T PF12416_consen 71 CFAVDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIED 133 (340)
T ss_pred EEEecCCCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEec
Confidence 888773 33 58999999999887 545 4567899999873332223446666666554
No 188
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=92.14 E-value=0.3 Score=51.35 Aligned_cols=49 Identities=33% Similarity=0.411 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHhcccEEEEEEeccCCceeEecCCCCCCCCCCchhhhhhHHHHHHHHHHHHHcCCeEEEEEec
Q 003523 199 RCWEDIFDAIASAEHFIYMTGWSMYAPITLLRDPRRIKPKGNITAEEMLKTTLGDLLKKKADEGVKVLLLIWD 271 (813)
Q Consensus 199 ~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~g~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD 271 (813)
...+.+.+.|++|+++|+|..|. .. . ..|.+.|++|.+|||+|.++++.
T Consensus 10 ~I~~~i~elI~~Ae~eI~is~~~----------~~-------l-------~~l~~~L~~a~~rGV~V~li~~~ 58 (233)
T PF11495_consen 10 TILERIRELIENAESEIYISIPP----------EF-------L-------EELRDELEEAVDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHC-SSEEEEEE-G----------GG-------H-------HHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHhheEEEEEcCH----------HH-------H-------HHHHHHHHHHHHCCCEEEEEEeC
Confidence 46789999999999999999873 11 1 18999999999999999999955
No 189
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=90.19 E-value=1.2 Score=44.41 Aligned_cols=89 Identities=15% Similarity=0.246 Sum_probs=57.2
Q ss_pred cceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEE--CCeeee---eeeecc--C-CCCCCeeeeEEEEEec--C--
Q 003523 6 LHGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDL--DKARMA---RTRMIT--E-RTSRPHWNQSFRIYCA--H-- 73 (813)
Q Consensus 6 l~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l--~~~~~~---rT~vi~--~-~t~nP~WNE~F~~~v~--~-- 73 (813)
....+.|+|.++.+++... ...-+|-||++.| +++.+. .|+... + -...+.|||...|++. +
T Consensus 6 v~~~~~i~v~~~h~~~~~~------~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LP 79 (171)
T cd04012 6 VTDLLSVTVSSLHRIPPTW------VQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLP 79 (171)
T ss_pred ccccEEEEEEEeecCChHH------hhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCC
Confidence 4567899999999999641 0112688999877 555443 333221 1 1236789999777753 2
Q ss_pred CcceEEEEEEeCCCCC----------ceeEEEEEEec
Q 003523 74 RVSHVVFTIKNDNPVG----------AILIGRAYVPV 100 (813)
Q Consensus 74 ~~~~l~~~V~D~d~~g----------~~~IG~~~ipl 100 (813)
..+.|.|+|++....+ ...||.++++|
T Consensus 80 rearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~L 116 (171)
T cd04012 80 RESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPL 116 (171)
T ss_pred hhHEEEEEEEEEecCCccccccccccceEEEEEeEee
Confidence 2478999999855432 24777777665
No 190
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=90.17 E-value=2.3 Score=41.02 Aligned_cols=67 Identities=21% Similarity=0.405 Sum_probs=43.9
Q ss_pred CcEEEEEE--CCeeee----eeeeccCCC-CCCeeeeEEEEEec--C--CcceEEEEEEeCCCCCc-----eeEEEEEEe
Q 003523 36 ALYATVDL--DKARMA----RTRMITERT-SRPHWNQSFRIYCA--H--RVSHVVFTIKNDNPVGA-----ILIGRAYVP 99 (813)
Q Consensus 36 DPYv~v~l--~~~~~~----rT~vi~~~t-~nP~WNE~F~~~v~--~--~~~~l~~~V~D~d~~g~-----~~IG~~~ip 99 (813)
+-||++.| +++... .|+.+.- + .+|.|||...|++. + ....|.|+|+..+.... ..||.+.++
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~-~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~ 81 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPF-SFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLP 81 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EES-S-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEE
T ss_pred eEEEEEEEEECCEEeecCeeecccccc-ccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEE
Confidence 34666655 554443 5665554 4 79999998777653 2 34789999998665443 689999998
Q ss_pred cccc
Q 003523 100 VEDV 103 (813)
Q Consensus 100 l~~l 103 (813)
+=+.
T Consensus 82 lFd~ 85 (142)
T PF00792_consen 82 LFDY 85 (142)
T ss_dssp SB-T
T ss_pred eECC
Confidence 7543
No 191
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=89.35 E-value=1.5 Score=43.71 Aligned_cols=70 Identities=20% Similarity=0.333 Sum_probs=57.8
Q ss_pred CCcEEEEEECCeeeeeeeeccC-CCCCCeeeeEEEEEecCCcceEEEEEEeCCCCCceeEEEEEEeccccc
Q 003523 35 TALYATVDLDKARMARTRMITE-RTSRPHWNQSFRIYCAHRVSHVVFTIKNDNPVGAILIGRAYVPVEDVA 104 (813)
Q Consensus 35 sDPYv~v~l~~~~~~rT~vi~~-~t~nP~WNE~F~~~v~~~~~~l~~~V~D~d~~g~~~IG~~~ipl~~l~ 104 (813)
..-|++|.++++.+.+|+...- ....=.+||.|.+.+..-=+.|.+.|+.....++.+|+++.||+-...
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGLSDRLLAEVFVPVPGST 107 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCccceEEEEEEeeCCCCc
Confidence 5789999999999999987643 244556899999999876689999999988877899999999986443
No 192
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=88.87 E-value=1.7 Score=43.94 Aligned_cols=54 Identities=19% Similarity=0.306 Sum_probs=31.2
Q ss_pred eeeeeeccCCCCCCeeeeEEEEEecCC---cceEEEEEEeCCCCC--c--eeEEEEEEeccc
Q 003523 48 MARTRMITERTSRPHWNQSFRIYCAHR---VSHVVFTIKNDNPVG--A--ILIGRAYVPVED 102 (813)
Q Consensus 48 ~~rT~vi~~~t~nP~WNE~F~~~v~~~---~~~l~~~V~D~d~~g--~--~~IG~~~ipl~~ 102 (813)
...|.|... +.+|.|||+|.+.++.. ..+|.|++++-..-. . ..+|-+.+||-+
T Consensus 60 ~~~S~v~yh-~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYH-NKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT--SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEec-CCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 346777766 89999999999988643 378999999855432 1 578877777654
No 193
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=88.04 E-value=4.1 Score=40.98 Aligned_cols=119 Identities=11% Similarity=0.119 Sum_probs=64.1
Q ss_pred ceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEE--CCeee--eeeeeccCCCCCCeeeeEEEEEec--C--CcceE
Q 003523 7 HGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDL--DKARM--ARTRMITERTSRPHWNQSFRIYCA--H--RVSHV 78 (813)
Q Consensus 7 ~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l--~~~~~--~rT~vi~~~t~nP~WNE~F~~~v~--~--~~~~l 78 (813)
...++|+|.++.++... ......-||++.| +++.. .+|+...- +.+|.|||..+|++. + ..+.|
T Consensus 9 ~~~friki~~~~~~~~~-------~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~-~~~~~WnEwL~f~I~~~dLP~~arL 80 (178)
T cd08399 9 DRKFRVKILGIDIPVLP-------RNTDLTVFVEANIQHGQQVLCQRRTSPKPF-TEEVLWNTWLEFDIKIKDLPKGALL 80 (178)
T ss_pred CCCEEEEEEeecccCcC-------CCCceEEEEEEEEEECCeecccceeeccCC-CCCccccccEECccccccCChhhEE
Confidence 34688999998743211 1111235666644 44322 15666666 678999998777653 2 24789
Q ss_pred EEEEEeCCCCC--ceeEEEEEEecccccCCceeeeEEE--ccCCCCCcCCCCCeEEEEEEeee
Q 003523 79 VFTIKNDNPVG--AILIGRAYVPVEDVAKEFVIDRSFD--IRDEEYKNIPGGSKIHVMLQFVH 137 (813)
Q Consensus 79 ~~~V~D~d~~g--~~~IG~~~ipl~~l~~g~~~~~w~~--L~~~~gk~~~~~g~l~l~l~f~~ 137 (813)
.|+|++....+ ...+|.. +.+.-......-.|.. |.|.++.- ..|...|.+.-.|
T Consensus 81 c~ti~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~wvn~~LFD~~~~L--r~G~~~L~~W~~~ 139 (178)
T cd08399 81 NLQIYCGKAPALSSKKSAES--PSSESKGKHQLLYYVNLLLIDHRFLL--RTGEYVLHMWQIS 139 (178)
T ss_pred EEEEEEEecCcccccccccc--cccccccccceEEEEEEEEEcCCCce--ecCCEEEEEecCC
Confidence 99999853221 1223321 1111111122334643 44544432 4678888887655
No 194
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=87.68 E-value=1.8 Score=50.96 Aligned_cols=88 Identities=17% Similarity=0.343 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHcCCCeEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCceEEeecCCcc
Q 003523 544 ELSLKIVSKIEAGEDFRVYIVIPMWPEGVPESASVQAILGWQRRTIEMMYADVAQAIQKKGLDDAYPRDYLTFFCLGNRE 623 (813)
Q Consensus 544 ~~a~~i~~a~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~~t~~~~~~~i~~~L~~~gv~~~~~~~yl~~~~l~~~~ 623 (813)
.|+.+++.|+++|+.| .+|+-...-.+ +.+.+ .+++.|.++|+++ +|++
T Consensus 385 pIV~ALi~AA~nGKqV--tvlVELkARFD-EE~NI----------------~WAk~LE~AGvhV--------vyG~---- 433 (696)
T COG0855 385 PIVRALIDAAENGKQV--TVLVELKARFD-EEANI----------------HWAKRLERAGVHV--------VYGV---- 433 (696)
T ss_pred HHHHHHHHHHHcCCeE--EEEEEEhhhcC-hhhhh----------------HHHHHHHhCCcEE--------Eecc----
Confidence 4788999999999654 44444322111 11111 2567899999976 3432
Q ss_pred ccccCCCCCCCCCCchHHHHHhhccceEEEeeeEEEEe----c---eEEEEcccccCcccccCCCCcceEEee
Q 003523 624 NIEEYNPEQSSESNSDYYKAQKARRFMIYVHSKMMIVD----D---EYIIIGSANINQRSMDGARDTEIAMGA 689 (813)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHsK~mIVD----D---~~~~iGSaNin~RS~~~~~DsEi~v~i 689 (813)
. ..-+|+|+++|= | +|+=+|+.|.|..+-..- |.+++..
T Consensus 434 -----~--------------------glKtHAKm~lVvRrE~~~lrrY~HlGTGNYn~~TAriY--TD~sl~T 479 (696)
T COG0855 434 -----V--------------------GLKTHAKMLLVVRREGGKLRRYVHLGTGNYNPKTARLY--TDLSLLT 479 (696)
T ss_pred -----c--------------------ceeeeeeEEEEEEecCCcEEEEEEecCCCCCccceeee--eechhcc
Confidence 1 137999999984 2 799999999999886443 4444443
No 195
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=86.70 E-value=0.19 Score=59.11 Aligned_cols=96 Identities=11% Similarity=0.020 Sum_probs=66.7
Q ss_pred CCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCcceEEEEEEeCCCCC-ceeEEEEEEecccccC-CceeeeE
Q 003523 35 TALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRVSHVVFTIKNDNPVG-AILIGRAYVPVEDVAK-EFVIDRS 112 (813)
Q Consensus 35 sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~~V~D~d~~g-~~~IG~~~ipl~~l~~-g~~~~~w 112 (813)
-|||+.|.+.-...+.+.+... +.+|.|||+|.+.+ +....+.|.|+.+...+ +.....+++-.+++.. ....+.|
T Consensus 28 l~~y~~v~vk~~~~~~~~~~~~-~~~~~~~~~F~~~v-~~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~w 105 (694)
T KOG0694|consen 28 LQPYLAVELKVKQGAENMTKVE-LRIPELRETFHVEV-VAGGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRLW 105 (694)
T ss_pred hhhhheeccceeecccccCCCC-CCCchhhhheeeee-ecCCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhhc
Confidence 6999999998777667666666 99999999999995 46678999999876544 3444444444444432 1234568
Q ss_pred EEccCCCCCcCCCCCeEEEEEEeeeccc
Q 003523 113 FDIRDEEYKNIPGGSKIHVMLQFVHVVN 140 (813)
Q Consensus 113 ~~L~~~~gk~~~~~g~l~l~l~f~~~~~ 140 (813)
..+ ++.|+++..+.+.-..+
T Consensus 106 ~~~--------~~~g~~~~~~~~~~~~~ 125 (694)
T KOG0694|consen 106 VLI--------EELGTLLKPAALTGTLE 125 (694)
T ss_pred ccc--------ccccceeeeecccCcCC
Confidence 875 24577877777765444
No 196
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=86.03 E-value=6.1 Score=43.00 Aligned_cols=40 Identities=35% Similarity=0.388 Sum_probs=28.1
Q ss_pred EEEeeeEEEE-e---ceEEEEcccccCc-ccccCCCCcceEEeeecC
Q 003523 651 IYVHSKMMIV-D---DEYIIIGSANINQ-RSMDGARDTEIAMGAFQP 692 (813)
Q Consensus 651 iyvHsK~mIV-D---D~~~~iGSaNin~-RS~~~~~DsEi~v~i~~~ 692 (813)
+-+|+|+.+. - +..++|||||+.. -.+. .+=.| +++..|+
T Consensus 79 ~~~HgKlY~f~k~g~~~~a~IGSANfS~~~~~~-~~~~E-~~v~~D~ 123 (296)
T PF09565_consen 79 PPYHGKLYIFSKNGKPFRAYIGSANFSQINGFT-RRQYE-AMVTCDP 123 (296)
T ss_pred CCcccEEEEEecCCCceEEEEeecccccccccc-cccee-EEEecCh
Confidence 3699999999 2 4789999999988 2222 23378 5555554
No 197
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=83.81 E-value=2.2 Score=43.26 Aligned_cols=37 Identities=22% Similarity=0.458 Sum_probs=29.7
Q ss_pred eeeeeeccCCCCCCeeeeEEEEEecC---CcceEEEEEEeC
Q 003523 48 MARTRMITERTSRPHWNQSFRIYCAH---RVSHVVFTIKND 85 (813)
Q Consensus 48 ~~rT~vi~~~t~nP~WNE~F~~~v~~---~~~~l~~~V~D~ 85 (813)
..+|.|... ..+|.|||++.+.++- ...+|.|++++.
T Consensus 54 e~~S~V~yH-~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~ 93 (189)
T cd08695 54 EYRSFVLYH-NNSPRWNETIKLPIPIDKFRGSHLRFEFRHC 93 (189)
T ss_pred eEEEEEEEc-CCCCCCceeEEEecChhhCCCeeEEEEEEEe
Confidence 358888887 8899999999998864 347899988763
No 198
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=81.10 E-value=3.6 Score=41.34 Aligned_cols=52 Identities=21% Similarity=0.356 Sum_probs=36.6
Q ss_pred eeeeccCCCCCCeeeeEEEEEecC---CcceEEEEEEeCCCCC------ceeEEEEEEeccc
Q 003523 50 RTRMITERTSRPHWNQSFRIYCAH---RVSHVVFTIKNDNPVG------AILIGRAYVPVED 102 (813)
Q Consensus 50 rT~vi~~~t~nP~WNE~F~~~v~~---~~~~l~~~V~D~d~~g------~~~IG~~~ipl~~ 102 (813)
-|.++.. ..+|.|||+|.+.++- ...+|.|++++-..-. ...+|-+.+||-+
T Consensus 55 ~~sv~~~-~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYY-HKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEc-CCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 3555666 4899999999998753 3478999999855432 2477777666643
No 199
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=80.90 E-value=2.5 Score=42.98 Aligned_cols=38 Identities=21% Similarity=0.500 Sum_probs=30.0
Q ss_pred eeeeeeeccCCCCCCeeeeEEEEEecC---CcceEEEEEEeC
Q 003523 47 RMARTRMITERTSRPHWNQSFRIYCAH---RVSHVVFTIKND 85 (813)
Q Consensus 47 ~~~rT~vi~~~t~nP~WNE~F~~~v~~---~~~~l~~~V~D~ 85 (813)
...+|-|... ..+|.|||++.+.++- ...+|.|++++.
T Consensus 53 se~~S~V~Yh-~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~ 93 (196)
T cd08694 53 DEYKSVIYYQ-VDKPKWFETFKVAIPIEDFKSSHLRFTFKHR 93 (196)
T ss_pred eeEEEEEEee-cCCCCCceeEEEecChhhCCCeEEEEEEEee
Confidence 3458888766 7899999999998864 347899999763
No 200
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=79.52 E-value=0.77 Score=55.24 Aligned_cols=116 Identities=18% Similarity=0.250 Sum_probs=73.8
Q ss_pred ccceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECC----eeeeeeeeccCCCCCCeeeeEEEEEecCCcceEEE
Q 003523 5 LLHGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDK----ARMARTRMITERTSRPHWNQSFRIYCAHRVSHVVF 80 (813)
Q Consensus 5 ll~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~----~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~ 80 (813)
++.|.|++.+.+|..|++. ..-||+..++. ...++|+++.+ |..|.||++|++++.. .+.+.+
T Consensus 756 l~ygflh~~vhsat~lkqs-----------~~lY~Td~v~e~~~~~s~~st~~iad-T~~~~~npe~hv~~~~-sqS~r~ 822 (1112)
T KOG4269|consen 756 LLYGFLHVIVHSATGLKQS-----------RNLYCTDEVDEFGYFVSKASTRVIAD-TAEPQWNPEKHVPVIE-SQSSRL 822 (1112)
T ss_pred ccccceeeeeccccccccc-----------cceeeehhhhhhccccccccceeeec-ccCCCCChhcccchhh-ccccch
Confidence 6789999999999999863 46788888753 34579999999 9999999999999852 344445
Q ss_pred EEEeCCCC-----------CceeEEEEEEecccccCCceeeeEEEccCCCCCcCCCCCeEEEEEEeeeccc
Q 003523 81 TIKNDNPV-----------GAILIGRAYVPVEDVAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQFVHVVN 140 (813)
Q Consensus 81 ~V~D~d~~-----------g~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f~~~~~ 140 (813)
..++++.- .+...|+..+-+.-.... ...|+.-...- -...+...|.|.+-..
T Consensus 823 ~~~ek~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~~~--d~d~~t~v~~~-----n~~~ve~~v~~ssss~ 886 (1112)
T KOG4269|consen 823 EKTEKSTPVEKLIDSHSQNSQNEEKRSRMKLDPQPHH--DADWYTQVIDM-----NGIVVETSVKFSSSST 886 (1112)
T ss_pred hhhcccchHHHhhhccchhhcccccccccccCccccc--cccCccChhhh-----cCcceeeeEEeccccc
Confidence 44443321 134555555544322111 12354433211 1235677788877543
No 201
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=78.82 E-value=26 Score=35.42 Aligned_cols=142 Identities=15% Similarity=0.174 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHhccceEEEeeccccccccCccccccccchhhhhccchHHHHHHHHHHHHcCCCeEEEEEecCCCCCCC
Q 003523 494 RSIQDAYINAIRRAKNFIYIENQYFIGSSYGWLSKDIRVEDINALQLIPKELSLKIVSKIEAGEDFRVYIVIPMWPEGVP 573 (813)
Q Consensus 494 ~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~~~~~~~~~~~~~~~n~i~~~~a~~i~~a~~~g~~v~V~IvlP~~p~g~~ 573 (813)
.-|+..+++.|+.|+.|..+.. |+..+ . + ..+...+..+..+| ++++|+....-..
T Consensus 38 e~il~~Li~~l~k~~ef~IsVa--Fit~s-----G-~------------sll~~~L~d~~~Kg--vkgkilts~Ylnf-- 93 (198)
T COG3886 38 EKILPRLIDELEKADEFEISVA--FITES-----G-L------------SLLFDLLLDLVNKG--VKGKILTSDYLNF-- 93 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEEE--EeeCc-----c-H------------HHHHHHHHHHhcCC--ceEEEecccccCc--
Confidence 5789999999999999988873 66432 1 0 12345566776667 9999998764321
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCceEEeecCCccccccCCCCCCCCCCchHHHHHhhccceEEE
Q 003523 574 ESASVQAILGWQRRTIEMMYADVAQAIQKKGLDDAYPRDYLTFFCLGNRENIEEYNPEQSSESNSDYYKAQKARRFMIYV 653 (813)
Q Consensus 574 ~~~~~~~i~~~~~~t~~~~~~~i~~~L~~~gv~~~~~~~yl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv 653 (813)
++. .+ +.+.|.-..++. +++..|++ -.
T Consensus 94 ----TdP-------~a------l~~Ll~~~nve~-------r~~~~~~~-----------------------------~f 120 (198)
T COG3886 94 ----TDP-------VA------LRKLLMLKNVEL-------RVSTIGSA-----------------------------NF 120 (198)
T ss_pred ----cCH-------HH------HHHHHhhhccce-------EEEecCcc-----------------------------cc
Confidence 110 11 223333334443 34433322 23
Q ss_pred eeeEEEEe---ceEEEEcccccCcccccCCCCcceEEeeecCCccCCCCchhhhHHHHHHHHHHHhhC
Q 003523 654 HSKMMIVD---DEYIIIGSANINQRSMDGARDTEIAMGAFQPRHLNTTEPARGQIYGFRIALWYEHLG 718 (813)
Q Consensus 654 HsK~mIVD---D~~~~iGSaNin~RS~~~~~DsEi~v~i~~~~~~~~~~~~~~~~~~lR~~Lw~ehlG 718 (813)
|+|-.|.. .-.++|||.|+.+--+.-| .|=++.+..... +.-...+.....++|.+|.-
T Consensus 121 H~KgYiFe~~~~~taiiGSsNlt~sALt~n--~Ewn~k~s~~~~----g~i~~~~k~~f~r~~~~~~t 182 (198)
T COG3886 121 HTKGYIFEHNTGITAIIGSSNLTDSALTVN--EEWNLKVSSSKN----GDIVKEVKVTFERQFQNKIT 182 (198)
T ss_pred ccceeEEEecceEEEEEccchhhhhhcccC--HHHHhhhccccc----cchHHHHHHHHHHHHHhhcc
Confidence 44444432 1238999999999888655 787776532211 12223355667778877743
No 202
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=76.11 E-value=13 Score=33.51 Aligned_cols=69 Identities=17% Similarity=0.222 Sum_probs=44.0
Q ss_pred EEEEEEEeecCCCCCCCCCccCcccCCcEEEEEE--CCeeee---eeeeccCCCCCCeeeeEEEEEec--C--CcceEEE
Q 003523 10 LIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDL--DKARMA---RTRMITERTSRPHWNQSFRIYCA--H--RVSHVVF 80 (813)
Q Consensus 10 L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l--~~~~~~---rT~vi~~~t~nP~WNE~F~~~v~--~--~~~~l~~ 80 (813)
+.+++..+++.+-.. . ... +|-||++.| +++.+. .|+.+.- ...+.|||...|++. + ....|.|
T Consensus 13 ~~~~~~~~~~~~l~~----~-~~~-~~l~v~~~l~~g~~~l~~pv~t~~~~~-~~~~~Wnewl~f~i~i~~LPr~a~L~~ 85 (100)
T smart00142 13 LVITIALIHGIPLNW----S-RDY-SDLYVEIQLYHGGKLLCLPVSTSYKPF-FPSVKWNEWLTFPIQISDLPREARLCI 85 (100)
T ss_pred eEEEEEEeeCCCccc----c-cCc-ceEEEEEEEEECCEEccCcEEecccCC-CCCcccceeEEccCchhcCChhhEEEE
Confidence 566777777765320 0 011 589999877 554432 4555544 566999999777753 2 2478999
Q ss_pred EEEeC
Q 003523 81 TIKND 85 (813)
Q Consensus 81 ~V~D~ 85 (813)
+|++.
T Consensus 86 ~i~~~ 90 (100)
T smart00142 86 TIYEV 90 (100)
T ss_pred EEEEe
Confidence 99984
No 203
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=76.10 E-value=8.3 Score=40.49 Aligned_cols=51 Identities=20% Similarity=0.241 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHhccceEEEeeccccccccCccccccccchhhhhccchHHHHHHHHHHHHcCCCeEEEEEecC
Q 003523 493 DRSIQDAYINAIRRAKNFIYIENQYFIGSSYGWLSKDIRVEDINALQLIPKELSLKIVSKIEAGEDFRVYIVIPM 567 (813)
Q Consensus 493 ~~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~~~~~~~~~~~~~~~n~i~~~~a~~i~~a~~~g~~v~V~IvlP~ 567 (813)
..+|.+...++|++|++.|||..+. .. -.++...|.+|.+|| |.|++++..
T Consensus 8 ~~~I~~~i~elI~~Ae~eI~is~~~---------~~-------------l~~l~~~L~~a~~rG--V~V~li~~~ 58 (233)
T PF11495_consen 8 RETILERIRELIENAESEIYISIPP---------EF-------------LEELRDELEEAVDRG--VKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHHC-SSEEEEEE-G---------GG-------------HHHHHHHHHHHHHTT---EEEEEESS
T ss_pred HHHHHHHHHHHHHHhheEEEEEcCH---------HH-------------HHHHHHHHHHHHHCC--CEEEEEEeC
Confidence 5678899999999999999998632 11 236778899999999 899999875
No 204
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=75.89 E-value=20 Score=33.02 Aligned_cols=94 Identities=6% Similarity=0.064 Sum_probs=50.7
Q ss_pred EEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCC--------cceEEEEEEeCCCCCceeEEEEEEecccccC--Cc
Q 003523 38 YATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHR--------VSHVVFTIKNDNPVGAILIGRAYVPVEDVAK--EF 107 (813)
Q Consensus 38 Yv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~--------~~~l~~~V~D~d~~g~~~IG~~~ipl~~l~~--g~ 107 (813)
||++++-.-...-|.++. +.||..|-+=++.|.-. ...+.++++..--..-..||.+.|++..++. |.
T Consensus 2 Fct~dFydfEtq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~ 79 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGE 79 (107)
T ss_dssp EEEE-STT---EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S-
T ss_pred EEEEEeeceeeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCc
Confidence 677777665555677764 79999998855555422 2567888876542113799999999999984 44
Q ss_pred eeeeEEEccCCCCCcCCCCCeEEEEEEee
Q 003523 108 VIDRSFDIRDEEYKNIPGGSKIHVMLQFV 136 (813)
Q Consensus 108 ~~~~w~~L~~~~gk~~~~~g~l~l~l~f~ 136 (813)
.+..-..|.+.+|+ .-|.|.+.++..
T Consensus 80 ~i~~~~~l~g~~~~---~~g~l~y~~rl~ 105 (107)
T PF11618_consen 80 RIHGSATLVGVSGE---DFGTLEYWIRLR 105 (107)
T ss_dssp -EEEEEEE-BSSS----TSEEEEEEEEEE
T ss_pred eEEEEEEEeccCCC---eEEEEEEEEEec
Confidence 57778888887777 458888777643
No 205
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=73.46 E-value=8.2 Score=38.89 Aligned_cols=39 Identities=18% Similarity=0.247 Sum_probs=30.9
Q ss_pred eeeeeeeccCCCCCCeeeeEEEEEecC---CcceEEEEEEeCC
Q 003523 47 RMARTRMITERTSRPHWNQSFRIYCAH---RVSHVVFTIKNDN 86 (813)
Q Consensus 47 ~~~rT~vi~~~t~nP~WNE~F~~~v~~---~~~~l~~~V~D~d 86 (813)
..+.|.|.-. +.+|.|+|+|.+.++- ...+|.|++++-.
T Consensus 54 ~~~~S~V~yH-nk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs 95 (179)
T cd08696 54 TEAYTAVTYH-NKSPDFYDEIKIKLPADLTDNHHLLFTFYHIS 95 (179)
T ss_pred eeEEEEEEEe-CCCCcccceEEEEcCCCCCCCeEEEEEEEEee
Confidence 4457888877 8999999999998763 3478999998843
No 206
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=71.61 E-value=6 Score=45.99 Aligned_cols=85 Identities=16% Similarity=0.274 Sum_probs=58.4
Q ss_pred eeeeeeeeccCCCCCCeeeeEEEEEec-CCcceEEEEEEeCCCC-----CceeEEEEEEecccccCCceeeeEEEccCCC
Q 003523 46 ARMARTRMITERTSRPHWNQSFRIYCA-HRVSHVVFTIKNDNPV-----GAILIGRAYVPVEDVAKEFVIDRSFDIRDEE 119 (813)
Q Consensus 46 ~~~~rT~vi~~~t~nP~WNE~F~~~v~-~~~~~l~~~V~D~d~~-----g~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~ 119 (813)
.+++||.++.+ .+||+|-+.|.+.-. ...+.|+|.++|-+.. ..+++|++...+..+.+...... ++.-+.
T Consensus 40 ~e~~rte~i~~-~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~--~l~~~~ 116 (529)
T KOG1327|consen 40 EEVGRTEVIRN-VLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTG--PLLLKP 116 (529)
T ss_pred ccccceeeeec-cCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhh--hhhccc
Confidence 35679999999 999999999887642 3468999999996654 24799999999988876432222 333233
Q ss_pred CCcCCCCCeEEEEEE
Q 003523 120 YKNIPGGSKIHVMLQ 134 (813)
Q Consensus 120 gk~~~~~g~l~l~l~ 134 (813)
+++ .+.|.|.+++.
T Consensus 117 ~~~-~~~g~iti~ae 130 (529)
T KOG1327|consen 117 GKN-AGSGTITISAE 130 (529)
T ss_pred Ccc-CCcccEEEEee
Confidence 332 24566665554
No 207
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=71.00 E-value=5.1 Score=45.48 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=34.8
Q ss_pred eEEEEEEeccc-ccCCceeeeEEEccCCCCCcCCCCCeEEEEEEeee
Q 003523 92 LIGRAYVPVED-VAKEFVIDRSFDIRDEEYKNIPGGSKIHVMLQFVH 137 (813)
Q Consensus 92 ~IG~~~ipl~~-l~~g~~~~~w~~L~~~~gk~~~~~g~l~l~l~f~~ 137 (813)
++|.+.||++. +..|...+.|||+.+...+.. +.|.| ++++|..
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~-~~~~l-lk~~~~~ 45 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSV-GEGLI-IKVSSEE 45 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCc-CcceE-EEEEeee
Confidence 48999999999 555788999999998665554 55777 7887775
No 208
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=69.11 E-value=11 Score=38.12 Aligned_cols=40 Identities=15% Similarity=0.298 Sum_probs=32.0
Q ss_pred eeeeeeeeccCCCCCCeeeeEEEEEecC---CcceEEEEEEeCC
Q 003523 46 ARMARTRMITERTSRPHWNQSFRIYCAH---RVSHVVFTIKNDN 86 (813)
Q Consensus 46 ~~~~rT~vi~~~t~nP~WNE~F~~~v~~---~~~~l~~~V~D~d 86 (813)
...+.|.|... +.+|.|+|++.+.++- ...+|.|++++-.
T Consensus 55 ~~~~~s~V~yh-~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 55 TTSAYAAVLHH-NQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred ceEEEEEEEEc-CCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 34568888888 8999999999998753 3478999999854
No 209
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=65.32 E-value=3.9 Score=47.34 Aligned_cols=39 Identities=21% Similarity=0.272 Sum_probs=27.0
Q ss_pred eEEEeeeEEEEec-------eEEEEcccccCcccccCC----------CCcceEEee
Q 003523 650 MIYVHSKMMIVDD-------EYIIIGSANINQRSMDGA----------RDTEIAMGA 689 (813)
Q Consensus 650 ~iyvHsK~mIVDD-------~~~~iGSaNin~RS~~~~----------~DsEi~v~i 689 (813)
.+..|+|+++... .|+++|||||..-.+ |. +..|++|.+
T Consensus 346 ~~~pH~K~y~~~~~~~~~~~~W~~lgShNLS~aAW-G~~~~~~~~l~i~nyElGVl~ 401 (443)
T PF06087_consen 346 RAPPHIKTYMRFSKNDFKSLGWFYLGSHNLSKAAW-GKRSKNGSQLSIRNYELGVLF 401 (443)
T ss_dssp TS-B--EEEEEEE-TTTSEECEEEEES--BSHHHH--EEETTTTCCEESSBEEEEEE
T ss_pred CcCcceEEEEEecCCCCCccceEEeCcccCCHHHh-cccccCCceeeecceEEEEEE
Confidence 4589999999986 699999999987554 23 568999997
No 210
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=52.79 E-value=1.1e+02 Score=33.81 Aligned_cols=99 Identities=15% Similarity=0.145 Sum_probs=64.5
Q ss_pred EEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCe-eeeEEEEEecCCcceEEEEEEeCCCC
Q 003523 10 LIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPH-WNQSFRIYCAHRVSHVVFTIKNDNPV 88 (813)
Q Consensus 10 L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~-WNE~F~~~v~~~~~~l~~~V~D~d~~ 88 (813)
|-|.|.|-.++... ..-|+++..++..+ +|..+.-+-.+-+ =.|...+.+..-...|.+.|+-...+
T Consensus 60 LLVeI~EI~~i~k~-----------khiyIef~~Gr~d~-TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLv 127 (508)
T PTZ00447 60 LLVKINEIFNINKY-----------KHIYIIFSTDKYDF-TTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLT 127 (508)
T ss_pred EEEEehhhhccccc-----------eeEEEEEEcCceEE-EccccccCcCceEEEeeeeeeeeeecCceEEEEEEecccc
Confidence 55666666555431 46788999988765 6655543233333 22334444433346799999999888
Q ss_pred CceeEEEEEEecc-cccCCc-eeeeEEEccCCCCC
Q 003523 89 GAILIGRAYVPVE-DVAKEF-VIDRSFDIRDEEYK 121 (813)
Q Consensus 89 g~~~IG~~~ipl~-~l~~g~-~~~~w~~L~~~~gk 121 (813)
+..-||.+.|.+. ++..+. +.+.||-+. ++|+
T Consensus 128 kk~hIgdI~InIn~dIIdk~FPKnkWy~c~-kDGq 161 (508)
T PTZ00447 128 KKVHIGQIKIDINASVISKSFPKNEWFVCF-KDGQ 161 (508)
T ss_pred ceeEEEEEEecccHHHHhccCCccceEEEe-cCCc
Confidence 8999999999984 555543 457899994 5555
No 211
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=47.79 E-value=1.4e+02 Score=33.96 Aligned_cols=112 Identities=12% Similarity=0.220 Sum_probs=66.0
Q ss_pred cCCcEEEEEECCeeeeeeeecc---CCCCCC-eee---eEEEEEecC------C------cceEEEEEEeCCC-----C-
Q 003523 34 GTALYATVDLDKARMARTRMIT---ERTSRP-HWN---QSFRIYCAH------R------VSHVVFTIKNDNP-----V- 88 (813)
Q Consensus 34 ~sDPYv~v~l~~~~~~rT~vi~---~~t~nP-~WN---E~F~~~v~~------~------~~~l~~~V~D~d~-----~- 88 (813)
++-+||+|.|.+-.. +|..+. ..+.+| .=+ -.|++.-+. . ...|+|.||--.. +
T Consensus 35 sspCfC~IrL~~fP~-Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~ 113 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPS-QTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVG 113 (460)
T ss_pred CCCeEEEEecCCCCc-cceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCccccc
Confidence 478999999998765 444332 212222 111 237764211 1 1469999997442 2
Q ss_pred -CceeEEEEEEeccccc--CCce---eeeEEEccCCCC-CcCCCCCeEEEEEEeeecccCcccccccCC
Q 003523 89 -GAILIGRAYVPVEDVA--KEFV---IDRSFDIRDEEY-KNIPGGSKIHVMLQFVHVVNDNSWSRGIRS 150 (813)
Q Consensus 89 -g~~~IG~~~ipl~~l~--~g~~---~~~w~~L~~~~g-k~~~~~g~l~l~l~f~~~~~~~~w~~gi~~ 150 (813)
+..+||++.|||. +. .+.. .++|+.|-.... +..+...+||+.++-.| ||-|...-++
T Consensus 114 ~~~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~Ep---DPRfVFQFdg 178 (460)
T PF06219_consen 114 NSGKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEP---DPRFVFQFDG 178 (460)
T ss_pred ccceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccC---CCeeEEEcCC
Confidence 2479999999996 22 2332 478999954321 11225789999998555 6655554433
No 212
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=37.25 E-value=3.3 Score=48.34 Aligned_cols=77 Identities=13% Similarity=0.160 Sum_probs=49.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCc--ceEEEEEEeC
Q 003523 8 GILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRV--SHVVFTIKND 85 (813)
Q Consensus 8 G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~--~~l~~~V~D~ 85 (813)
|..-+++|.|.++++- ...+.+....+|++.+.++++.. ||+.-.. +.+|+|||. .+.+.... ..|.+.|.+.
T Consensus 280 gi~ll~lI~a~~~~~i--~~~~~~~f~~~~~~itsf~~~~f-rt~~~~~-~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~ 354 (975)
T KOG2419|consen 280 GIALLTLIGAEMKYDI--VEDVAKLFKDKWLAITSFGEQTF-RTEISDD-TEKPIYNED-EREDSDFQSNRYLGNKIVGY 354 (975)
T ss_pred hhHHHHHhhhhcccch--hhhhhhccCCCchheeecchhhh-hhhhhcc-ccccccccc-ccccccchhhHHHhhhcccc
Confidence 4444567777777541 01111233479999999999875 9998888 999999997 44443222 3455555555
Q ss_pred CCCC
Q 003523 86 NPVG 89 (813)
Q Consensus 86 d~~g 89 (813)
+...
T Consensus 355 ~~~~ 358 (975)
T KOG2419|consen 355 CELD 358 (975)
T ss_pred cccc
Confidence 5543
No 213
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=36.85 E-value=61 Score=36.40 Aligned_cols=56 Identities=16% Similarity=0.269 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHhccceEEEeeccccccccCccccccccchhhhhccchHHHHHHHHHHHHcCCCeEEEEEecCCC
Q 003523 494 RSIQDAYINAIRRAKNFIYIENQYFIGSSYGWLSKDIRVEDINALQLIPKELSLKIVSKIEAGEDFRVYIVIPMWP 569 (813)
Q Consensus 494 ~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~~~~~~~~~~~~~~~n~i~~~~a~~i~~a~~~g~~v~V~IvlP~~p 569 (813)
...++.+.+.|.+||+.|+|.+-|.-.. -.|+++.|..+++.++.++|.|++...-
T Consensus 38 ~~fy~~lk~~I~~aq~Ri~lasLYlG~~--------------------E~elv~cl~~aL~~~~~L~v~iLlD~~r 93 (469)
T KOG3964|consen 38 PEFYQRLKKLIKKAQRRIFLASLYLGKL--------------------ERELVDCLSNALEKNPSLKVSILLDFLR 93 (469)
T ss_pred HHHHHHHHHHHHHhhheeeeeeeccchh--------------------HHHHHHHHHHHhccCCCcEEEeehhhhh
Confidence 3568888999999999999999887421 2488899999999999999999987543
No 214
>KOG3508 consensus GTPase-activating protein [General function prediction only]
Probab=30.11 E-value=21 Score=44.13 Aligned_cols=95 Identities=19% Similarity=0.074 Sum_probs=64.0
Q ss_pred EEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCcceEE-EEEEeCCC-
Q 003523 10 LIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRVSHVV-FTIKNDNP- 87 (813)
Q Consensus 10 L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~-~~V~D~d~- 87 (813)
+...|.||+.||.+ .--+|..++++.-.+||.-... +.|=.|.|.|.|++..+..... -.+.+-+.
T Consensus 104 ~~~wi~e~~~lp~~-----------~~l~~~~~~d~~l~~r~~s~~~-~s~vl~gE~~~f~~lPpl~~~~~~~~~~i~~~ 171 (932)
T KOG3508|consen 104 GSYWIREAKRLPGK-----------GKLSCLLQLDGTLYARTISKCG-TSNVLWGENFLFPVLPPLPVVDVLRVRAILPK 171 (932)
T ss_pred eeEEeeccCcCCCc-----------ceeehhhccchhHHhhhhhhcc-cchhccccccccccCCccchhhhhhhhhhhhh
Confidence 55678888888754 2456667777666667777666 8999999999999765542222 22222222
Q ss_pred ---CCceeEEEEEEecccccCCceeeeEEEccC
Q 003523 88 ---VGAILIGRAYVPVEDVAKEFVIDRSFDIRD 117 (813)
Q Consensus 88 ---~g~~~IG~~~ipl~~l~~g~~~~~w~~L~~ 117 (813)
...+.||-+. +...+..-+..+.|+.+..
T Consensus 172 ~k~~~n~~l~~~~-~~~f~~~~~~~d~w~~v~t 203 (932)
T KOG3508|consen 172 KKKPTNDEIGFVK-GDEFPVHRDLEDGWYWVTT 203 (932)
T ss_pred hccCccccccccc-chhheecccccceeEEeec
Confidence 1246999988 6666665566789999975
No 215
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=28.65 E-value=5.4e+02 Score=25.43 Aligned_cols=92 Identities=12% Similarity=0.159 Sum_probs=60.3
Q ss_pred EEEEEEEeecCCCCCCCCCccCcccCCcEEEEEE---------CCee-eeeeeeccCC----CCCCeeeeEEEEEecCC-
Q 003523 10 LIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDL---------DKAR-MARTRMITER----TSRPHWNQSFRIYCAHR- 74 (813)
Q Consensus 10 L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l---------~~~~-~~rT~vi~~~----t~nP~WNE~F~~~v~~~- 74 (813)
+.-.|.+|++... ++-||+-.+ .+.. .++|.+.... ...=+||--|.+.+...
T Consensus 4 v~G~I~~a~~f~~------------~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~ 71 (168)
T PF07162_consen 4 VIGEIESAEGFEE------------DNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTN 71 (168)
T ss_pred EEEEEEEEECCCC------------CCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCC
Confidence 3456888988764 467888776 2233 5777776531 34567999887776432
Q ss_pred ---cceEEEEEEeCCCCCc-eeEEEEEEecccccCCc---eeeeEEE
Q 003523 75 ---VSHVVFTIKNDNPVGA-ILIGRAYVPVEDVAKEF---VIDRSFD 114 (813)
Q Consensus 75 ---~~~l~~~V~D~d~~g~-~~IG~~~ipl~~l~~g~---~~~~w~~ 114 (813)
-..|.|+|+..|..+. .+.|-..+.|-. .+|. .+..|-|
T Consensus 72 ~~gwP~L~l~V~~~D~~gr~~~~GYG~~~lP~-~pG~h~~~v~~wrP 117 (168)
T PF07162_consen 72 PQGWPQLVLQVYSLDSWGRDRVEGYGFCHLPT-QPGRHEVEVPTWRP 117 (168)
T ss_pred CCCCceEEEEEEEEcccCCeEEeEEeEEEeCC-CCceEEEEEEEEee
Confidence 2689999999999884 688877766642 2553 2345655
No 216
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=26.81 E-value=4.8e+02 Score=23.64 Aligned_cols=57 Identities=14% Similarity=0.175 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCCeEEEEEecCCCCcccccccCcCCCCcHHHHHHHhcCCCEEEEcC
Q 003523 250 TLGDLLKKKADEGVKVLLLIWDDRTSVDILKEDGLMGTHDEETADYFRKTKVRCVLCP 307 (813)
Q Consensus 250 ~l~~lL~~kA~rGV~VriLvwD~~~s~~~~~~~g~~~t~~~~~~~~l~~~gV~~~~~~ 307 (813)
++.+++.+.+++|++--+++ .-+-.....-+.-+......+++..|+.+|++|..+.
T Consensus 43 ~i~~~l~~l~~~G~~~i~lv-Pl~L~~G~H~~~Dipge~~~SW~~~l~~~g~~v~~~~ 99 (103)
T cd03413 43 GLDDVLAKLKKAGIKKVTLM-PLMLVAGDHAHNDMAGDEPDSWKSILEAAGIKVETVL 99 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEE-ehhheecccchhcCCCCCchhHHHHHHHCCCeeEEEe
Confidence 68899999999999865554 3221111000111222233578999999999986543
No 217
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=25.12 E-value=48 Score=38.39 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=20.0
Q ss_pred EEeeeEEEE---ec-eEEEEcccccCccccc
Q 003523 652 YVHSKMMIV---DD-EYIIIGSANINQRSMD 678 (813)
Q Consensus 652 yvHsK~mIV---DD-~~~~iGSaNin~RS~~ 678 (813)
--|||+||. |+ --++|.||||-..-+.
T Consensus 101 ~hHsKm~ll~y~~~~lRVvI~TaNl~~~Dw~ 131 (443)
T PF06087_consen 101 THHSKMMLLFYEDGSLRVVIPTANLTPYDWN 131 (443)
T ss_dssp -B--EEEEEEETTCEEEEEEESS-BSHHHHC
T ss_pred cccceeEEEEeCCccEEEEEECCCCCHHHHC
Confidence 689999999 67 7899999999887773
No 218
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=24.17 E-value=3.4e+02 Score=32.33 Aligned_cols=100 Identities=13% Similarity=0.207 Sum_probs=65.5
Q ss_pred cceEEEEEEEEeecCCCCCCCCCccCcccCCcEEEEEECCeeeeeeeeccCCCCCCeeeeEEEEEecCCcceEEEEEEeC
Q 003523 6 LHGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRVSHVVFTIKND 85 (813)
Q Consensus 6 l~G~L~V~IieA~~L~~~~~~~~~~~~~~sDPYv~v~l~~~~~~rT~vi~~~t~nP~WNE~F~~~v~~~~~~l~~~V~D~ 85 (813)
|.=.++|.|.|.++|+...+ ..=-||++.+++.+. +|--. ....|.|.-.=.|...|+...+.+.++-.
T Consensus 339 la~smevvvmevqglksvap--------nrivyctmevegekl-qtdqa--easkp~wgtqgdfstthplpvvkvklfte 407 (1218)
T KOG3543|consen 339 LALSMEVVVMEVQGLKSVAP--------NRIVYCTMEVEGEKL-QTDQA--EASKPKWGTQGDFSTTHPLPVVKVKLFTE 407 (1218)
T ss_pred EEeeeeEEEeeeccccccCC--------CeeEEEEEEeccccc-ccchh--hhcCCCCCcCCCcccCCCCceeEEEEEee
Confidence 44468899999999974211 123699999999765 55543 26789999987777777776777777654
Q ss_pred CC--C--CceeEEEEEEecccccCCceeeeEEEccCC
Q 003523 86 NP--V--GAILIGRAYVPVEDVAKEFVIDRSFDIRDE 118 (813)
Q Consensus 86 d~--~--g~~~IG~~~ipl~~l~~g~~~~~w~~L~~~ 118 (813)
.. + -|.-+|++.|--..- ......|+.+.-+
T Consensus 408 stgvlaledkelgrvil~ptpn--s~ks~ewh~mtvp 442 (1218)
T KOG3543|consen 408 STGVLALEDKELGRVILQPTPN--SAKSPEWHTMTVP 442 (1218)
T ss_pred cceeEEeechhhCeEEEecCCC--CcCCccceeeecC
Confidence 32 2 256889887743211 1223368877543
No 219
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=22.21 E-value=2.1e+02 Score=31.30 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHcCCeEEEEEecCCCCcccccccCcCCCCcHHHHHHHhcCCCEEEEcC
Q 003523 250 TLGDLLKKKADEGVKVLLLIWDDRTSVDILKEDGLMGTHDEETADYFRKTKVRCVLCP 307 (813)
Q Consensus 250 ~l~~lL~~kA~rGV~VriLvwD~~~s~~~~~~~g~~~t~~~~~~~~l~~~gV~~~~~~ 307 (813)
++.++|+.++++|.++++.|-..+... . ...+.+.|++.||.+.+..
T Consensus 131 ~v~~~l~~A~~~~k~~~V~VtESRP~~-----e------G~~~ak~L~~~gI~~~~I~ 177 (301)
T COG1184 131 TVLEVLKTAADRGKRFKVIVTESRPRG-----E------GRIMAKELRQSGIPVTVIV 177 (301)
T ss_pred HHHHHHHHhhhcCCceEEEEEcCCCcc-----h------HHHHHHHHHHcCCceEEEe
Confidence 899999999999998888773443221 1 2467889999999876543
Done!