Query 003523
Match_columns 813
No_of_seqs 451 out of 3582
Neff 7.2
Searched_HMMs 29240
Date Tue Mar 26 18:04:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003523.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1572-1576//hhsearch_pdb/003523hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v0w_A Phospholipase D; hydrol 1.0 1 1 310.3 25.3 391 198-718 65-492 (506)
2 3hsi_A Phosphatidylserine synt 1.0 1 1 270.7 23.9 363 163-714 22-417 (458)
3 1xdp_A Polyphosphate kinase; P 1.0 1 1 191.7 25.0 274 197-693 345-631 (687)
4 2o8r_A Polyphosphate kinase; s 1.0 1 1 175.1 25.6 273 197-693 350-637 (705)
5 2fk9_A Protein kinase C, ETA t 1.0 1 1 172.9 14.8 123 4-136 25-156 (157)
6 1gmi_A Protein kinase C, epsil 1.0 1 1 158.7 15.6 124 5-138 3-134 (136)
7 3bxj_A RAS GTPase-activating p 1.0 1 1 158.4 0.2 103 5-119 8-118 (483)
8 1wfj_A Putative elicitor-respo 1.0 1 1 155.6 12.7 127 4-141 6-134 (136)
9 2dmh_A Myoferlin; beta-sandwic 1.0 1 1 154.3 16.2 124 6-140 5-136 (140)
10 3b7y_A E3 ubiquitin-protein li 1.0 1 1 153.1 15.7 125 5-137 17-153 (153)
No 1
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=1.00 E-value=1 Score=310.32 Aligned_cols=391 Identities=16% Similarity=0.131 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECC-CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC--CEEEEEEECCCC
Q ss_conf 3269999999980364899999426-8752574199988999970244434779999999998729--938999814987
Q 003523 198 HRCWEDIFDAIASAEHFIYMTGWSM-YAPITLLRDPRRIKPKGNITAEEMLKTTLGDLLKKKADEG--VKVLLLIWDDRT 274 (813)
Q Consensus 198 ~~~~~~l~~aI~~Ak~~I~I~~w~~-~~~~~L~r~~~~~~~g~~~~~~~~~~~~l~~lL~~ka~rG--V~V~iLvwd~~~ 274 (813)
.++|++++++|++|+++|+|+.|.+ .+ +.. +. .|.++|++||+|| |+||||+ |..+
T Consensus 65 ~~~~~~l~~~I~~Ak~~I~i~~y~~~~~-------d~~-----g~--------~i~~aL~~aa~rGp~V~Vril~-D~~g 123 (506)
T 1v0w_A 65 KRLLAKMTENIGNATRTVDISTLAPFPN-------GAF-----QD--------AIVAGLKESAAKGNKLKVRILV-GAAP 123 (506)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEEESSCCC-------HHH-----HH--------HHHHHHHHHHHTTCCEEEEEEE-ECCC
T ss_pred HHHHHHHHHHHHHHCCEEEEEEEECCCC-------CHH-----HH--------HHHHHHHHHHHCCCCCEEEEEE-ECCC
T ss_conf 9999999999997334999999621279-------738-----99--------9999999998579975899998-3763
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECC
Q ss_conf 73110125767999588999872399779984888885320015534443355321499737899999775405999855
Q 003523 275 SVDILKEDGLMGTHDEETADYFRKTKVRCVLCPRTSEIFTNIRGYQTSSIFTHHQKTVVVDSEVPGGGTQKRRVVSFVGG 354 (813)
Q Consensus 275 s~~~~~~~g~~~~~~~~~~~~l~~~~V~~~~~~~~p~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~~vAfvGG 354 (813)
+.... ..+....+.|+..|+++.. ..+.....+.. ....+.+||+|++|||++ ++|+||
T Consensus 124 ~~~~~-------~~~~~~~~~L~~~g~~~~~--~~~~~~~~~~~-~~~~~~r~H~K~~ViD~~-----------~a~~Gg 182 (506)
T 1v0w_A 124 VYHMN-------VIPSKYRDELTAKLGKAAE--NITLNVASMTT-SKTAFSWNHSKILVVDGQ-----------SALTGG 182 (506)
T ss_dssp --CCC-------CHHHHHHHHHHHHHGGGGG--GEEEEEEEECS-BTTTTBCBCCCEEEETTT-----------EEEEES
T ss_pred CCCCC-------CCCHHHHHHHHHCCCCEEE--CCCCCCCCCCC-CCCCCCCCEEEEEEECCC-----------EEEEEC
T ss_conf 34555-------6879999999851553110--57621133323-688521220269998786-----------899604
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 12788644589854322243446898889999999878999999710020015075899999999999830038988999
Q 003523 355 IDLCDGRYDTQEHSLFRTLKTIHRDDFHQPNFPGSSIEKGGPREPWHDIHCKLEGPVAWDVLYNFEQRWTKQADKKDLFP 434 (813)
Q Consensus 355 ~dl~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~~~~~~~~ 434 (813)
+|+++++|.+. ..+|||++++++||+|.++...|.++|+..........
T Consensus 183 ~Nl~~d~y~~~-------------------------------~~~~~D~~v~i~G~~v~~l~~~F~~~W~~~~~~~~~~~ 231 (506)
T 1v0w_A 183 INSWKDDYLDT-------------------------------THPVSDVDLALTGPAAGSAGRYLDTLWTWTCQNKSNIA 231 (506)
T ss_dssp CCCCHHHHTSS-------------------------------SSCCBEEEEEEESHHHHHHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCCCCCCCCC-------------------------------CCCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 53674100357-------------------------------89805889999787899999999999766406667756
Q ss_pred ------------CCCCCCCCCCCCCCCCCCCCCEE--------EEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCC---
Q ss_conf ------------95763345899876767889603--------4775034667456799995887350320388974---
Q 003523 435 ------------PESLHQNLIHPLLDTSKDLESWN--------VQIFRSIDGTAAADFPTDPFEAARVGLITGKDNV--- 491 (813)
Q Consensus 435 ------------~~~~~~~~~p~~~~~~~~~~~~~--------vQi~Rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~--- 491 (813)
...+.....|... ...+... +|++++.+......+. +. +....+++..+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~i~~~~P~~~~~~~~--w~-~~~~~~~~d~P~~~~~ 305 (506)
T 1v0w_A 232 SVWFAASGNAGCMPTMHKDTNPKAS---PATGNVPVIAVGGLGVGIKDVDPKSTFRPDL--PT-ASDTKCVVGLHDNTNA 305 (506)
T ss_dssp TEEEEESTTCCCCTTHHHHHSCSSC---CCCSSEEEEEEECCCSSSCSCCTTCCCCCCC--CC-CSSSCSSTTCCCTTTS
T ss_pred HHCCCCCCCCCCCCHHCCCCCCCCC---CCCCCCCCEECCCCCCEEECCCCCCCCCCCC--CC-CCCCEEECCCCCCCCC
T ss_conf 6314666544457000234576567---6556663001245441000478610014567--54-3431000256555667
Q ss_pred -----CHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf -----215899999999983344689952011356557665441000022110015999999999988099809999924
Q 003523 492 -----FDRSIQDAYINAIRRAKNFIYIENQYFIGSSYGWLSKDIRVEDINALQLIPKELSLKIVSKIEAGEDFRVYIVIP 566 (813)
Q Consensus 492 -----~e~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~w~~~~~~~~~~~~~n~i~~~la~~i~~a~~~g~~~~V~IViP 566 (813)
.+.++..+|+++|.+|+++|||++|||.+-.. |.. .....+..+|..|+++| ++|+||+|
T Consensus 306 ~~~~~~~~~~~~~~~~~I~~A~~~I~I~tq~~~pyf~--p~~-----------~~~~~i~~aL~~Aa~rG--V~VrIl~~ 370 (506)
T 1v0w_A 306 DRDYDTVNPEESALRALVASAKGHIEISQQDLNATCP--PLP-----------RYDIRLYDALAAKMAAG--VKVRIVVS 370 (506)
T ss_dssp CHHHHHHCHHHHHHHHHHHTCSSEEEEEESCSSCCTT--TSC-----------SCCHHHHHHHHHHHHTT--CEEEEEEC
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCC--CCC-----------CCHHHHHHHHHHHHHCC--CCEEEEEC
T ss_conf 6554444638999999985758679999636544006--753-----------21089999999998689--80899958
Q ss_pred CCCCCCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCEEEEECCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 9999999951478----88888788798789999999998399987--98993488324874456667878889988368
Q 003523 567 MWPEGVPESASVQ----AILGWQRRTIEMMYADVAQAIQKKGLDDA--YPRDYLTFFCLGNRENIEEYNPEQSSESNSDY 640 (813)
Q Consensus 567 ~~p~g~~~~~~~~----~il~~~~~t~~~~~~~i~~~L~~~gi~~~--~p~~yl~~~~l~~~~~~~~~~~~~~~~~~~~~ 640 (813)
..++......+.. .++.. ...+. ....|.++|+... .+...+.++.++.... .+|..
T Consensus 371 ~~~~~~~~~~a~~~~~~~L~~~-~~~l~-----~gv~ll~~g~~e~~~~~~~~l~i~~~~~~~~-~~~~~---------- 433 (506)
T 1v0w_A 371 DPANRGAVGSGGYSQIKSLSEI-SDTLR-----NRLANITGGQQAAKTAMCSNLQLATFRSSPN-GKWAD---------- 433 (506)
T ss_dssp CGGGCC------CCCCSCTHHH-HHHHH-----HHHHHHHTSHHHHHHHHHHHEEEEECCSSSS-SSCTT----------
T ss_pred CCCCHHHHHHHHHHHHHHHHHH-HHHHC-----CCCHHCCCCCCHHCCCCCCCEEEEECCCCCC-CCCCC----------
T ss_conf 9884177777678878888775-44220-----1200103562000014566604542035676-44446----------
Q ss_pred HHHHHHCCCEEEEEEEEEEEECEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 999861220189866599991129998165667565468998410796415775477886010499999999999409
Q 003523 641 YKAQKARRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGARDTEIAMGAFQPRHLNTTEPARGQIYGFRIALWYEHLG 718 (813)
Q Consensus 641 ~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANiN~RSm~g~rDsEi~i~i~~~~~~~~~~~~~~~~~~lR~~Lw~ehlG 718 (813)
....++|+|+|||||++++|||+|||.||| +|+++.++++.. ..++.....+.+.++.+
T Consensus 434 -------~~~~~lHaK~~vvD~~~~~vGS~N~d~rS~-----~E~~l~i~~~~~-------a~~l~~~f~~~~w~~s~ 492 (506)
T 1v0w_A 434 -------GHPYAQHHKLVSVDSSTFYIGSKNLYPSWL-----QDFGYIVESPEA-------AKQLDAKLLDPQWKYSQ 492 (506)
T ss_dssp -------SCCCCBCCEEEEETTTEEEEESCCSSCCCS-----BCEEEEEECHHH-------HHHHHHHTHHHHHHHHG
T ss_pred -------CCCCCCEEEEEEECCCEEEEECCCCCCCCH-----HHCEEEECCHHH-------HHHHHHHHHHHHHHHCC
T ss_conf -------765641577999878589973787897235-----350557628999-------99999999898874236
No 2
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=1.00 E-value=1 Score=270.70 Aligned_cols=363 Identities=17% Similarity=0.091 Sum_probs=217.6
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEECCCCCCCCCCCCH
Q ss_conf 22335918999130467899999710499974441326999999998036489999942687525741999889999702
Q 003523 163 FGQRQGCKVTLYQDAHVLDDFKPKIPLSNGEYYESHRCWEDIFDAIASAEHFIYMTGWSMYAPITLLRDPRRIKPKGNIT 242 (813)
Q Consensus 163 ~p~~~g~~v~l~~d~~~~~~~~p~~~~~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~g~~~~ 242 (813)
||. .||.|+++.+| .++|+++.++|.+|+++|+|+.|.|.+ +.. +.
T Consensus 22 ~~~-~~n~v~~l~~g--------------------~~~~~~l~~~I~~A~~~I~i~~~~~~~-------d~~-----g~- 67 (458)
T 3hsi_A 22 LAL-QAEQIEFLGSS--------------------AEFKTQIIELIRNAKKRIYVTALYWQK-------DEA-----GQ- 67 (458)
T ss_dssp EEC-CGGGEEECCCH--------------------HHHHHHHHHHHHTCSSEEEEEESCBCS-------SHH-----HH-
T ss_pred CCC-CCCEEEEEECH--------------------HHHHHHHHHHHHHCCCEEEEEEEEEEC-------CCH-----HH-
T ss_conf 645-48869999388--------------------999999999998408889999999725-------927-----99-
Q ss_pred HHHHHHHHHHHHHHHHHHC--CCEEEEEEECCCCCC-CCCCCCCCCCC-CCHHHHHHHHCCC--CEEE--ECCCCCCCCC
Q ss_conf 4443477999999999872--993899981498773-11012576799-9588999872399--7799--8488888532
Q 003523 243 AEEMLKTTLGDLLKKKADE--GVKVLLLIWDDRTSV-DILKEDGLMGT-HDEETADYFRKTK--VRCV--LCPRTSEIFT 314 (813)
Q Consensus 243 ~~~~~~~~l~~lL~~ka~r--GV~V~iLvwd~~~s~-~~~~~~g~~~~-~~~~~~~~l~~~~--V~~~--~~~~~p~~~~ 314 (813)
.|.++|.+||+| ||+|+||+ |+.... ..... ... ........|..++ |++. ++. .|..
T Consensus 68 -------~l~~aL~~aa~r~~GV~Vril~-D~~~~~r~~~g~---~~~~~~~~~~~~L~~~g~nv~v~~~~f~-~p~~-- 133 (458)
T 3hsi_A 68 -------EILDEIYRVKQENPHLDVKVLI-DWHRAQRNLLGA---EKSATNADWYCEQRQTYQLPDDPNMFFG-VPIN-- 133 (458)
T ss_dssp -------HHHHHHHHHHHHSTTCEEEEEE-ETTGGGSCCC--------CCHHHHHHHHHHHHTCTTCCCCEEE-ECSS--
T ss_pred -------HHHHHHHHHHHCCCCCEEEEEE-ECCCCCCCCCCC---CCCCCCHHHHHHHHHHCCCCEEEEEECC-CCCC--
T ss_conf -------9999999998558998799999-776564444565---5556668999999850899569550028-8544--
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00155344433553214997378999997754059998551278864458985432224344689888999999987899
Q 003523 315 NIRGYQTSSIFTHHQKTVVVDSEVPGGGTQKRRVVSFVGGIDLCDGRYDTQEHSLFRTLKTIHRDDFHQPNFPGSSIEKG 394 (813)
Q Consensus 315 ~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~~vAfvGG~dl~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~ 394 (813)
.....+++|+|++|||++ + ++||+|+.+.++...
T Consensus 134 -----~~~~~~r~H~Ki~viD~~-----------v-~~~G~Ni~d~y~~~~----------------------------- 167 (458)
T 3hsi_A 134 -----TREVFGVLHVKGFVFDDT-----------V-LYSGASINNVYLHQF----------------------------- 167 (458)
T ss_dssp -----SSGGGCCEECCEEEETTE-----------E-EEESCCBSTTTTTCS-----------------------------
T ss_pred -----CCCCCCCCEEEEEEECCC-----------E-EEEEEECCHHHHCCC-----------------------------
T ss_conf -----340147111159998898-----------8-998113678984678-----------------------------
Q ss_pred CCCCCCCCCCEEEECHHHHHHHHHHHH--HHHHCCCCCCCCCCCCC--CCC---------CCCCCCCCCC--CCCCEEEE
Q ss_conf 999971002001507589999999999--98300389889999576--334---------5899876767--88960347
Q 003523 395 GPREPWHDIHCKLEGPVAWDVLYNFEQ--RWTKQADKKDLFPPESL--HQN---------LIHPLLDTSK--DLESWNVQ 459 (813)
Q Consensus 395 ~~r~pWhDv~~~i~Gpaa~dl~~~F~~--rW~~~~~~~~~~~~~~~--~~~---------~~p~~~~~~~--~~~~~~vQ 459 (813)
.....|.|+ .+.||.+.|....|.+ .|+...-..+....... .+. +.+.....++ ..+...+|
T Consensus 168 ~~~~~drd~--~i~g~~~~D~~~~~~~~~~~~g~~v~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 245 (458)
T 3hsi_A 168 EKYRYDRYQ--KITHAELADSMVNFINDYLLDFSAVYPLDVTNRPRTKEIRGNIRAYRKDLAQNGEYSLKSAVKLPNVLS 245 (458)
T ss_dssp SCCEECCEE--EEECHHHHHHHHHHHHHTTCCTTTCEESSSSCCCCGGGTHHHHHHHHHHHHHHCCCCCSSCBSSCSSCE
T ss_pred CCCCCCHHH--HHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE
T ss_conf 645752255--652816889999998764016742111477742540566777899998631011356655578876299
Q ss_pred EEECCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 75034667456799995887350320388974215899999999983344689952011356557665441000022110
Q 003523 460 IFRSIDGTAAADFPTDPFEAARVGLITGKDNVFDRSIQDAYINAIRRAKNFIYIENQYFIGSSYGWLSKDIRVEDINALQ 539 (813)
Q Consensus 460 i~Rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~w~~~~~~~~~~~~~n 539 (813)
+... .+.+ ..+..+..+|+++|.+|++.|||+++||++.
T Consensus 246 v~p~----------------------~~~~-~~~~~i~~~~~~lI~~A~~~I~I~tpYf~p~------------------ 284 (458)
T 3hsi_A 246 VSPL----------------------FGLG-ASGNELNQVIEDLFLQVQKKLVICTPYFNFP------------------ 284 (458)
T ss_dssp EEEE----------------------EEES-SSSCHHHHHHHHHHHTCSSEEEEECSSSCCC------------------
T ss_pred EECC----------------------CCCC-CCHHHHHHHHHHHHHHCCCEEEEEEECCCCC------------------
T ss_conf 9607----------------------7889-7315899999999983465899998234799------------------
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEECCCC--CCC--CCCHHHHHHHHHHHHHH--HHHHHH---HHHHHHHCC-CCCCC
Q ss_conf 015999999999988099809999924999--999--99514788888878879--878999---999999839-99879
Q 003523 540 LIPKELSLKIVSKIEAGEDFRVYIVIPMWP--EGV--PESASVQAILGWQRRTI--EMMYAD---VAQAIQKKG-LDDAY 609 (813)
Q Consensus 540 ~i~~~la~~i~~a~~~g~~~~V~IViP~~p--~g~--~~~~~~~~il~~~~~t~--~~~~~~---i~~~L~~~g-i~~~~ 609 (813)
..+..+|..|+++| ++|.|++|... ++. ++.. ++.+..+.. +..... -++.|.++| +.+
T Consensus 285 ---~~~~~aL~~Aa~rG--V~VrIi~~~~~and~y~~~~~~----~~~~~~~~~lye~~~~~f~~~~~~l~~~G~i~V-- 353 (458)
T 3hsi_A 285 ---RTLQHKIATLLENG--KRVEIIVGDKVANDFYIPPEQP----FKMAGALPYLYESNLRRFCEKFETQIESGQLVV-- 353 (458)
T ss_dssp ---HHHHHHHHHHHTTT--CEEEEEEECGGGSTTCCCTTSC----CCGGGGHHHHHHHHHHHHHHHTHHHHHHTSEEE--
T ss_pred ---HHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCCCCCH----HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEE--
T ss_conf ---99999999998779--8299998982115776677633----445302588988766666777899985798289--
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEEEEEECEEEEECCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 89934883248744566678788899883689998612201898665999911299981656675654689984107964
Q 003523 610 PRDYLTFFCLGNRENIEEYNPEQSSESNSDYYKAQKARRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGARDTEIAMGA 689 (813)
Q Consensus 610 p~~yl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANiN~RSm~g~rDsEi~i~i 689 (813)
.+| +|.+ ..+|+|+|||||++++|||+|+|.||+. .|+|+++.+
T Consensus 354 -----~i~---------~~~~--------------------~~lHaK~~vvD~~~~~vGS~N~d~RS~~--lN~E~~~~i 397 (458)
T 3hsi_A 354 -----RLW---------RDGD--------------------NTYHLKGVWVDDRYILLTGNNLNPRAWR--LDAENGLLI 397 (458)
T ss_dssp -----EEE---------CBTT--------------------BEECCCEEEETTTEEEEECCCCSHHHHH--TCEEEEEEE
T ss_pred -----EEE---------ECCC--------------------CCEEEEEEEECCEEEEECCCCCCCCHHH--HCCEEEEEE
T ss_conf -----998---------0599--------------------8546779999873899538879800354--084358999
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 1577547788601049999999999
Q 003523 690 FQPRHLNTTEPARGQIYGFRIALWY 714 (813)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~lR~~Lw~ 714 (813)
+++.. ....++.....++|.
T Consensus 398 ~~~~~-----~l~~~l~~~f~~~~~ 417 (458)
T 3hsi_A 398 YDPQQ-----QLLAQVEKEQNQIRQ 417 (458)
T ss_dssp ECTTC-----SSHHHHHHHHHHHHT
T ss_pred ECCCH-----HHHHHHHHHHHHHHH
T ss_conf 57858-----999999999999997
No 3
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=1.00 E-value=1 Score=191.68 Aligned_cols=274 Identities=16% Similarity=0.201 Sum_probs=181.9
Q ss_pred CHHHHHHHHHHHHHCCC-----EEEEEEECCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 13269999999980364-----8999994268752574199988999970244434779999999998729938999814
Q 003523 197 SHRCWEDIFDAIASAEH-----FIYMTGWSMYAPITLLRDPRRIKPKGNITAEEMLKTTLGDLLKKKADEGVKVLLLIWD 271 (813)
Q Consensus 197 ~~~~~~~l~~aI~~Ak~-----~I~I~~w~~~~~~~L~r~~~~~~~g~~~~~~~~~~~~l~~lL~~ka~rGV~V~iLvwd 271 (813)
|...|+.+.+.|.+|++ +|+|+.|.+.+ + . .+.++|++||++||+|+||+ |
T Consensus 345 P~~sf~~v~~~I~~A~~dp~v~~I~it~Y~~~~-------------d--~--------~I~~AL~~AA~rGV~VrVLv-d 400 (687)
T 1xdp_A 345 PYHTFEHVLELLRQASFDPSVLAIKINIYRVAK-------------D--S--------RIIDSMIHAAHNGKKVTVVV-E 400 (687)
T ss_dssp TTBCTHHHHHHHHHHHHCTTEEEEEEEESSCCT-------------T--C--------HHHHHHHHHHHTTCEEEEEE-C
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECC-------------C--H--------HHHHHHHHHHHCCCEEEEEE-C
T ss_conf 256401579999987538762189998546328-------------6--7--------99999999986599899998-8
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEE
Q ss_conf 98773110125767999588999872399779984888885320015534443355321499737899999775405999
Q 003523 272 DRTSVDILKEDGLMGTHDEETADYFRKTKVRCVLCPRTSEIFTNIRGYQTSSIFTHHQKTVVVDSEVPGGGTQKRRVVSF 351 (813)
Q Consensus 272 ~~~s~~~~~~~g~~~~~~~~~~~~l~~~~V~~~~~~~~p~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~~vAf 351 (813)
..+.... ..+..+.+.|..+||++..+. + ..+.|.|++|||++..+ .-+-.+|
T Consensus 401 ~~a~~~~--------~~n~~~~~~L~~aGV~V~~~~--~-------------~~k~H~Ki~VID~re~~----~i~~~a~ 453 (687)
T 1xdp_A 401 LQARFDE--------EANIHWAKRLTEAGVHVIFSA--P-------------GLKIHAKLFLISRKENG----EVVRYAH 453 (687)
T ss_dssp TTCSSTT--------TTTTTTTHHHHHHTCEEEECC--T-------------TCEECCEEEEEEEEETT----EEEEEEE
T ss_pred CCCCCCH--------HHHHHHHHHHHHCCCEEEEEC--C-------------CCCCCCEEEEEEECCCC----EEEEEEE
T ss_conf 9764214--------657999999997898999925--8-------------86630269999821588----0789999
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECH-HHHHHHHHHHHHHHHCCCCC
Q ss_conf 85512788644589854322243446898889999999878999999710020015075-89999999999983003898
Q 003523 352 VGGIDLCDGRYDTQEHSLFRTLKTIHRDDFHQPNFPGSSIEKGGPREPWHDIHCKLEGP-VAWDVLYNFEQRWTKQADKK 430 (813)
Q Consensus 352 vGG~dl~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gp-aa~dl~~~F~~rW~~~~~~~ 430 (813)
+||.|+....+ ..|+|+++.+.|| ++.++...|...|.......
T Consensus 454 iGS~N~d~rs~-----------------------------------~~n~D~~l~i~~~~i~~~l~~~F~~~~~~s~~~~ 498 (687)
T 1xdp_A 454 IGTGNFNEKTA-----------------------------------RLYTDYSLLTADARITNEVRRVFNFIENPYRPVT 498 (687)
T ss_dssp EESSCSCTTGG-----------------------------------GTEEEEEEEECCHHHHHHHHHHHHHHHCTTSCCC
T ss_pred EECCCCCCCHH-----------------------------------HHCCEEEEEEECHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 96886880525-----------------------------------2412379998188999999999999973454434
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC-
Q ss_conf 8999957633458998767678896034775034667456799995887350320388974215899999999983344-
Q 003523 431 DLFPPESLHQNLIHPLLDTSKDLESWNVQIFRSIDGTAAADFPTDPFEAARVGLITGKDNVFDRSIQDAYINAIRRAKN- 509 (813)
Q Consensus 431 ~~~~~~~~~~~~~p~~~~~~~~~~~~~vQi~Rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak~- 509 (813)
. . +++.+ |. .....+...+...|..|++
T Consensus 499 ~----~----------------------~l~~s---------P~----------------~~~~~l~~~I~~ei~~A~~g 527 (687)
T 1xdp_A 499 F----D----------------------YLMVS---------PQ----------------NSRRLLYEMVDREIANAQQG 527 (687)
T ss_dssp C----S----------------------SCEEE---------TT----------------SHHHHHHHHHHHHHHHHHTT
T ss_pred H----H----------------------HEEEC---------CC----------------HHHHHHHHHHHHHHHHHHCC
T ss_conf 6----6----------------------50648---------82----------------06678999999999998728
Q ss_pred ---EEEEEECCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf ---68995201135655766544100002211001599999999998809980999992499999999514788888878
Q 003523 510 ---FIYIENQYFIGSSYGWLSKDIRVEDINALQLIPKELSLKIVSKIEAGEDFRVYIVIPMWPEGVPESASVQAILGWQR 586 (813)
Q Consensus 510 ---~IYIEnqYFi~~~~~w~~~~~~~~~~~~~n~i~~~la~~i~~a~~~g~~~~V~IViP~~p~g~~~~~~~~~il~~~~ 586 (813)
.|+|.+.|+. +. .+..+|..|+++| |+|.|++...-.-.|
T Consensus 528 ~~~~I~i~~~~lp-------D~---------------~ii~AL~~Aa~rG--V~VrLivrg~c~l~p------------- 570 (687)
T 1xdp_A 528 LPSGITLKLNNLV-------DK---------------GLVDRLYAASSSG--VPVNLLVRGMCSLIP------------- 570 (687)
T ss_dssp CCCCEEEEESCBC-------CH---------------HHHHHHHHHHHTT--CCEEEEESSCBCBCT-------------
T ss_pred CCCEEEEEECCCC-------CH---------------HHHHHHHHHHHCC--CEEEEEEECCCCCCC-------------
T ss_conf 9988999938989-------99---------------9999999999879--989999966313578-------------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEEEEE---ECE
Q ss_conf 87987899999999983999879899348832487445666787888998836899986122018986659999---112
Q 003523 587 RTIEMMYADVAQAIQKKGLDDAYPRDYLTFFCLGNRENIEEYNPEQSSESNSDYYKAQKARRFMIYVHSKMMIV---DDE 663 (813)
Q Consensus 587 ~t~~~~~~~i~~~L~~~gi~~~~p~~yl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIV---DD~ 663 (813)
|+... + +-+.+.. +.. + ..-|+|+.+. ||.
T Consensus 571 -----------------gvp~~-s-dni~V~s---------~~~-----------------r--~Leh~rI~~f~~~dd~ 603 (687)
T 1xdp_A 571 -----------------NLEGI-S-DNIRAIS---------IVD-----------------R--YLEHDRVYIFENGGDK 603 (687)
T ss_dssp -----------------TCTTT-S-TTEEEEE---------ECS-----------------S--SEECCCEEEECGGGSC
T ss_pred -----------------CCCCC-C-CCEEEEE---------EHH-----------------H--HHHCCEEEEECCCCCC
T ss_conf -----------------99999-8-7779987---------056-----------------7--8647739999289987
Q ss_pred EEEECCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 999816566756546899841079641577
Q 003523 664 YIIIGSANINQRSMDGARDTEIAMGAFQPR 693 (813)
Q Consensus 664 ~~iIGSANiN~RSm~g~rDsEi~i~i~~~~ 693 (813)
+++||||||+.||+. +.-|+++.++|+.
T Consensus 604 ~~~IGSAN~d~Rsl~--~n~Ev~~~I~d~~ 631 (687)
T 1xdp_A 604 KVYLSSADWMTRNID--YRIEVATPLLDPR 631 (687)
T ss_dssp EEEEESCCBSHHHHH--SEEEEEEECCSHH
T ss_pred EEEEECCCCCHHHHH--HHEEEEEEECCHH
T ss_conf 899985745222254--4244557965999
No 4
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=1.00 E-value=1 Score=175.08 Aligned_cols=273 Identities=14% Similarity=0.164 Sum_probs=181.3
Q ss_pred CHHHHHHHHHHHHHCCC-----EEEEEEECCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 13269999999980364-----8999994268752574199988999970244434779999999998729938999814
Q 003523 197 SHRCWEDIFDAIASAEH-----FIYMTGWSMYAPITLLRDPRRIKPKGNITAEEMLKTTLGDLLKKKADEGVKVLLLIWD 271 (813)
Q Consensus 197 ~~~~~~~l~~aI~~Ak~-----~I~I~~w~~~~~~~L~r~~~~~~~g~~~~~~~~~~~~l~~lL~~ka~rGV~V~iLvwd 271 (813)
|.+.|+.+.++|++|++ +|.++-|.+.. +. .+.++|++||++||+|++|+ |
T Consensus 350 p~~sf~~vi~~I~~A~~DP~V~sIk~tlYr~~~---------------ds--------~Iv~ALi~AA~rGv~V~vLv-e 405 (705)
T 2o8r_A 350 PYYTYDYVVRLLMEAAISPDVSEIRLTQYRVAE---------------NS--------SIISALEAAAQSGKKVSVFV-E 405 (705)
T ss_dssp TTBCSHHHHHHHHHHHTCTTEEEEEEEESCCCS---------------CC--------HHHHHHHHHHHTTCEEEEEE-C
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECC---------------CH--------HHHHHHHHHHHCCCEEEEEE-E
T ss_conf 367577999999985308884399999999709---------------78--------99999999998799999999-6
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC--CCCCCCCCCEEE
Q ss_conf 987731101257679995889998723997799848888853200155344433553214997378--999997754059
Q 003523 272 DRTSVDILKEDGLMGTHDEETADYFRKTKVRCVLCPRTSEIFTNIRGYQTSSIFTHHQKTVVVDSE--VPGGGTQKRRVV 349 (813)
Q Consensus 272 ~~~s~~~~~~~g~~~~~~~~~~~~l~~~~V~~~~~~~~p~~~~~~~~~~~~~~~~hHqK~vVVD~~--~~~~~~~~~~~v 349 (813)
.++.... ..+..+.+.|+.+||++.... ...++|+|++|||++ ..++ -++ .
T Consensus 406 -l~arfde-------e~ni~wa~~Le~aGv~Vv~g~---------------~~lk~H~Ki~lIdrr~~~~g~---~~~-y 458 (705)
T 2o8r_A 406 -LKARFDE-------ENNLRLSERMRRSGIRIVYSM---------------PGLKVHAKTALILYHTPAGER---PQG-I 458 (705)
T ss_dssp -CCSCC-----------CHHHHHHHHHHTCEEEECC---------------TTCCBCCCEEEEEECCCSSSC---CCE-E
T ss_pred -CCCCCCH-------HHHHHHHHHHHHCCCEEEECC---------------CCCCCEEEEEEEECCCCCCCC---EEE-E
T ss_conf -8878563-------444999999997899999866---------------887734479999461012786---237-8
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECH-HHHHHHHHHHHHHHHCCC
Q ss_conf 9985512788644589854322243446898889999999878999999710020015075-899999999999830038
Q 003523 350 SFVGGIDLCDGRYDTQEHSLFRTLKTIHRDDFHQPNFPGSSIEKGGPREPWHDIHCKLEGP-VAWDVLYNFEQRWTKQAD 428 (813)
Q Consensus 350 AfvGG~dl~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gp-aa~dl~~~F~~rW~~~~~ 428 (813)
+++|.-|+.+. .-.-|.|+++...+| ++.|+...|...|.....
T Consensus 459 ~~igtGN~n~~-----------------------------------tariy~D~~l~t~~~~i~~dl~~vF~~~tg~~~~ 503 (705)
T 2o8r_A 459 ALLSTGNFNET-----------------------------------TARIYSDTTLMTANTDIVHDVYRLFRILDGDPEP 503 (705)
T ss_dssp EEEESSCSSCC-----------------------------------CSSCEEEEEEEECCHHHHHHHHHHHHHHTTCCCC
T ss_pred EECCCCCEEEE-----------------------------------EEEEEEEEEEEECCHHHHHHHHHHHHHHHCCCCC
T ss_conf 76361660034-----------------------------------8999943103536869999999999998388887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 98899995763345899876767889603477503466745679999588735032038897421589999999998334
Q 003523 429 KKDLFPPESLHQNLIHPLLDTSKDLESWNVQIFRSIDGTAAADFPTDPFEAARVGLITGKDNVFDRSIQDAYINAIRRAK 508 (813)
Q Consensus 429 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~vQi~Rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak 508 (813)
.+ + .|++-+ |......|...+..+|.+|+
T Consensus 504 ------------------------~~-~-~~l~~s-------------------------P~~~~~~i~~~i~~eI~~Ak 532 (705)
T 2o8r_A 504 ------------------------AR-F-SRLLVA-------------------------RYNMGEAITNLIEREIENVK 532 (705)
T ss_dssp ------------------------SC-C-SSCEET-------------------------TTTHHHHHHHHHHHHHHHHH
T ss_pred ------------------------CC-C-EEEEEC-------------------------CCHHHHHHHHHHHHHHHHHH
T ss_conf ------------------------77-4-289989-------------------------90188999999999999975
Q ss_pred C----EEEEEECCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 4----689952011356557665441000022110015999999999988099809999924999999995147888888
Q 003523 509 N----FIYIENQYFIGSSYGWLSKDIRVEDINALQLIPKELSLKIVSKIEAGEDFRVYIVIPMWPEGVPESASVQAILGW 584 (813)
Q Consensus 509 ~----~IYIEnqYFi~~~~~w~~~~~~~~~~~~~n~i~~~la~~i~~a~~~g~~~~V~IViP~~p~g~~~~~~~~~il~~ 584 (813)
+ .|+|.+.|+. +. .+..+|..|..+| |+|.+++....--.|..
T Consensus 533 ~G~~a~I~ik~n~l~-------D~---------------~ii~aL~~As~~G--V~V~LIVRGiC~L~Pgv--------- 579 (705)
T 2o8r_A 533 RGKRGYMLLKMNGLQ-------DK---------------NVITQLYRASEAG--VEIDLIVRGICCLVPDM--------- 579 (705)
T ss_dssp TTCCCEEEEEESCBC-------CH---------------HHHHHHHHHHHTT--CEEEEEESSCBCSCCSS---------
T ss_pred CCCCCEEEEECCCCC-------CH---------------HHHHHHHHHHHCC--CEEEEEECCCCCCCCCC---------
T ss_conf 689988999818999-------89---------------9999999999879--96999972642468898---------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEEEEE---E
Q ss_conf 7887987899999999983999879899348832487445666787888998836899986122018986659999---1
Q 003523 585 QRRTIEMMYADVAQAIQKKGLDDAYPRDYLTFFCLGNRENIEEYNPEQSSESNSDYYKAQKARRFMIYVHSKMMIV---D 661 (813)
Q Consensus 585 ~~~t~~~~~~~i~~~L~~~gi~~~~p~~yl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIV---D 661 (813)
+ + . |-+.+.+ +.+ + ..=|+|+++. |
T Consensus 580 -------------~-~-s---------dni~V~S---------ivg-----------------r--~Leh~RIy~f~~gd 607 (705)
T 2o8r_A 580 -------------P-Q-S---------RNIRVTR---------LVD-----------------M--YLEHSRIWCFHNGG 607 (705)
T ss_dssp -------------G-G-G---------TTEEEEE---------CCS-----------------S--SEECCCEEEECGGG
T ss_pred -------------C-C-C---------CCEEEEE---------EHH-----------------H--HHHCCEEEEEECCC
T ss_conf -------------7-7-8---------8768976---------078-----------------8--97568799998899
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 12999816566756546899841079641577
Q 003523 662 DEYIIIGSANINQRSMDGARDTEIAMGAFQPR 693 (813)
Q Consensus 662 D~~~iIGSANiN~RSm~g~rDsEi~i~i~~~~ 693 (813)
|.+++||||||+.||+. +.-|+++.++|+.
T Consensus 608 ~~~~~IGSAn~m~Rnl~--~r~Ev~~~i~d~~ 637 (705)
T 2o8r_A 608 KEEVFISSADWMKRNLY--NRIETACPVLDPT 637 (705)
T ss_dssp SCEEEEESCCBCHHHHH--TSBCEEEECCSHH
T ss_pred CCEEEEECCCCCHHHHH--HEEEEEEEECCHH
T ss_conf 86899956443335243--1267878975989
No 5
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=172.92 Aligned_cols=123 Identities=18% Similarity=0.266 Sum_probs=103.2
Q ss_pred CCCCEEEEEEEEEEECCCCCCCCCC---CC-CCCCCCCEEEEEECCEEEEEEEECCCCCCCCEEEEEEEEEECCCCCEEE
Q ss_conf 4312299999997435999999997---66-7656794999997991200001115999998464599997339861699
Q 003523 4 RLLHGILIVRIYGIDKLHTGCGFGS---CE-QIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRVSHVV 79 (813)
Q Consensus 4 ~llhG~L~vtI~~Ak~L~~~~~~~~---~~-~~~~~DpYv~V~l~~~~~~rTkvi~~~t~nP~WNE~F~~~v~~~~~~i~ 79 (813)
++++|.|+|+|++|++|++++..+. .. ..+.+||||+|++++++++||+++++ |+||+|||+|.|.+. ....|.
T Consensus 25 ~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~k-tlnP~WNE~F~f~v~-~~~~L~ 102 (157)
T 2fk9_A 25 MKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQK-TNKPTYNEEFCANVT-DGGHLE 102 (157)
T ss_dssp CCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSS-CSSCEEEEEEEEEEE-EECEEE
T ss_pred CCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEECCC-CCCCCCCCEEEEECC-CCCEEE
T ss_conf 027608999999988998755554322023678887829999999996678652279-999833758999918-999999
Q ss_pred EEEEECCCCC-CEEEEEEEEECCCCCCC----CEEEEEEECCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 9999689889-60389999805334688----546548985579898689987299999864
Q 003523 80 FTIKNDNPVG-AILIGRAYVPVEDVAKE----FVIDRSFDIRDEEYKNIPGGSKIHVMLQFV 136 (813)
Q Consensus 80 i~V~D~d~~g-d~~IG~~~ipl~~l~~g----~~~~~w~~L~~~~gk~~~~~g~i~l~l~f~ 136 (813)
|+|+|+|.++ +++||.+.||++++..+ ...+.||+|. +.|+|+++++|.
T Consensus 103 ~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~--------~~G~i~l~l~~~ 156 (157)
T 2fk9_A 103 LAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE--------PEGKVFVVITLT 156 (157)
T ss_dssp EEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB--------SSCEEEEEEEEC
T ss_pred EEEEECCCCCCCCEEEEEEEEHHHHHCCCCCCCCCCEEEECC--------CCCEEEEEEEEE
T ss_conf 999989988889899899999899322457787633799899--------993999999997
No 6
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=1.00 E-value=1 Score=158.66 Aligned_cols=124 Identities=16% Similarity=0.316 Sum_probs=103.0
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCC-----CCCCCCCCCEEEEEECCEEEEEEEECCCCCCCCEEEEEEEEEECCCCCEEE
Q ss_conf 312299999997435999999997-----667656794999997991200001115999998464599997339861699
Q 003523 5 LLHGILIVRIYGIDKLHTGCGFGS-----CEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRVSHVV 79 (813)
Q Consensus 5 llhG~L~vtI~~Ak~L~~~~~~~~-----~~~~~~~DpYv~V~l~~~~~~rTkvi~~~t~nP~WNE~F~~~v~~~~~~i~ 79 (813)
+++|.|+|+|++|++|++++.++. ..+...+||||+|.+++.++++|+++.+ +.||+|||+|.|.+... ..|.
T Consensus 3 ~~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~-t~nP~WnE~f~f~v~~~-~~L~ 80 (136)
T 1gmi_A 3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQK-TNSPAWHDEFVTDVCNG-RKIE 80 (136)
T ss_dssp CEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSS-CSSCEEEEEEEEEEEEE-CEEE
T ss_pred CCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEEECC-CCCCCCCCEEEEEECCC-CEEE
T ss_conf 044089999996869998663651133554677676958999989967003357879-96974488899980689-9999
Q ss_pred EEEEECCCCC-CEEEEEEEEECCCCCCC--CEEEEEEECCCCCCCCCCCCCEEEEEEEEEEC
Q ss_conf 9999689889-60389999805334688--54654898557989868998729999986412
Q 003523 80 FTIKNDNPVG-AILIGRAYVPVEDVAKE--FVIDRSFDIRDEEYKNIPGGSKIHVMLQFVHV 138 (813)
Q Consensus 80 i~V~D~d~~g-d~~IG~~~ipl~~l~~g--~~~~~w~~L~~~~gk~~~~~g~i~l~l~f~p~ 138 (813)
|+|+|+|.++ +++||.+.|++.++..+ ...+.|++|. +.|+|+++++|.+.
T Consensus 81 ~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~i~l~l~~~~~ 134 (136)
T 1gmi_A 81 LAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE--------PEGKVYVIIDLSGS 134 (136)
T ss_dssp EEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB--------SSCEEEEEEEEEEE
T ss_pred EEEEECCCCCCCCEEEEEEEEHHHHCCCCCCCCCEEEECC--------CCEEEEEEEEEEEC
T ss_conf 9999699888898899999988992105798711789859--------98099999999916
No 7
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}
Probab=1.00 E-value=1 Score=158.40 Aligned_cols=103 Identities=18% Similarity=0.265 Sum_probs=89.8
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEECCCCC---CCCEEEEEEEEEECCCCCEEEEE
Q ss_conf 312299999997435999999997667656794999997991200001115999---99846459999733986169999
Q 003523 5 LLHGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERT---SRPHWNQSFRIYCAHRVSHVVFT 81 (813)
Q Consensus 5 llhG~L~vtI~~Ak~L~~~~~~~~~~~~~~~DpYv~V~l~~~~~~rTkvi~~~t---~nP~WNE~F~~~v~~~~~~i~i~ 81 (813)
-..|.|+|+|++|++|+++ .||||++++++++++||+++++ + .||+|||+|.|.+.+..+.|.|+
T Consensus 8 r~~~~L~V~VieAk~L~~~-----------ddpYv~v~l~~~~~~kT~v~~k-t~~glnP~WnE~F~f~~~~~~~~L~v~ 75 (483)
T 3bxj_A 8 RVDNVLKLWIIEARELPPK-----------KRYYCELCLDDMLYARTTSKPR-SASGDTVFWGEHFEFNNLPAVRALRLH 75 (483)
T ss_dssp EEEECC---------------------------------------------------------CCEECC-----------
T ss_pred EECCEEEEEEEECCCCCCC-----------CCCEEEEEECCEEEEEEEEEEC-CCCCCCCCCCCEEEEECCCCCCEEEEE
T ss_conf 1233899999976795977-----------8976999978837765667757-999999815547987437886579999
Q ss_pred EEEC-C---CCC-CEEEEEEEEECCCCCCCCEEEEEEECCCCC
Q ss_conf 9968-9---889-603899998053346885465489855798
Q 003523 82 IKND-N---PVG-AILIGRAYVPVEDVAKEFVIDRSFDIRDEE 119 (813)
Q Consensus 82 V~D~-d---~~g-d~~IG~~~ipl~~l~~g~~~~~w~~L~~~~ 119 (813)
|+|+ | ..+ +++||.+.||+.++..+...+.||+|.++.
T Consensus 76 V~d~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~ 118 (483)
T 3bxj_A 76 LYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPT 118 (483)
T ss_dssp -------------------------------CCEECC------
T ss_pred EEECCCCCCCCCCCCEEEEEEEEHHHHCCCCCCCEEEECCCCC
T ss_conf 9955775455788863799998888806788777078888888
No 8
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=1.00 E-value=1 Score=155.64 Aligned_cols=127 Identities=16% Similarity=0.223 Sum_probs=107.4
Q ss_pred CCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEECCCCCCCCEEEEEEEEEECCCCCEEEEEEE
Q ss_conf 43122999999974359999999976676567949999979912000011159999984645999973398616999999
Q 003523 4 RLLHGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAHRVSHVVFTIK 83 (813)
Q Consensus 4 ~llhG~L~vtI~~Ak~L~~~~~~~~~~~~~~~DpYv~V~l~~~~~~rTkvi~~~t~nP~WNE~F~~~v~~~~~~i~i~V~ 83 (813)
....|.|.|+|++|++|++++ ....+||||+|.++++++ ||+++++++.||+|||+|.|.+......|.|+|+
T Consensus 6 ~~~~~~L~v~v~~a~~L~~~d------~~g~~dpyv~v~~~~~~~-kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~ 78 (136)
T 1wfj_A 6 SGPHGTLEVVLVSAKGLEDAD------FLNNMDPYVQLTCRTQDQ-KSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIF 78 (136)
T ss_dssp CCCEEEEEEEEEEEEECSSCC------SSCSSCCCEEEESSSCEE-ECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEEC
T ss_pred CCCCEEEEEEEEECCCCCCCC------CCCCCCCEEEEEECCCCC-EEEECCCCCCCCCCCCEEEEEECCCCCEEEEEEE
T ss_conf 899689999999630898756------577868269999999612-1072249998994176799997799988999999
Q ss_pred ECCCCC-CEEEEEEEEECCCCC-CCCEEEEEEECCCCCCCCCCCCCEEEEEEEEEECCCC
Q ss_conf 689889-603899998053346-8854654898557989868998729999986412567
Q 003523 84 NDNPVG-AILIGRAYVPVEDVA-KEFVIDRSFDIRDEEYKNIPGGSKIHVMLQFVHVVND 141 (813)
Q Consensus 84 D~d~~g-d~~IG~~~ipl~~l~-~g~~~~~w~~L~~~~gk~~~~~g~i~l~l~f~p~~~~ 141 (813)
|++.++ +++||.+.|++.++. .+...+.||+|. .+++ ..|+|+++++|.|...+
T Consensus 79 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~-~~~~---~~G~i~l~l~~~p~~~~ 134 (136)
T 1wfj_A 79 DKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV-KDEE---YKGEIWVALSFKPSGPS 134 (136)
T ss_dssp CSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEE-ETTE---EEEEEEEEEEEEECCSC
T ss_pred ECCCCCCCCEEEEEEEEHHHHCCCCCCCCEEEEEE-CCCC---CCEEEEEEEEEEECCCC
T ss_conf 78988899638999998798245788886789964-3985---58899999999868888
No 9
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=154.26 Aligned_cols=124 Identities=16% Similarity=0.264 Sum_probs=106.3
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEECCCCCCCCEEEEEEEEEECC----CCCEEEEE
Q ss_conf 12299999997435999999997667656794999997991200001115999998464599997339----86169999
Q 003523 6 LHGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDKARMARTRMITERTSRPHWNQSFRIYCAH----RVSHVVFT 81 (813)
Q Consensus 6 lhG~L~vtI~~Ak~L~~~~~~~~~~~~~~~DpYv~V~l~~~~~~rTkvi~~~t~nP~WNE~F~~~v~~----~~~~i~i~ 81 (813)
..|.|.|+|++|++|+.++ ...+||||+|.+++++ .||+++++ +.||+|||+|.|.+.. ....|.|.
T Consensus 5 ~~g~L~v~v~~a~~L~~~~-------~g~~dpyv~v~~~~~~-~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~~~l~i~ 75 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTK-------FGKPDPIVSVIFKDEK-KKTKKVDN-ELNPVWNEILEFDLRGIPLDFSSSLGII 75 (140)
T ss_dssp BCCEEEEEEEEEESCCCCS-------SSCCCEEEEEECSSCE-EECCCCCS-CSSCEEEEEEEEECSSCCCCTTCEEEEE
T ss_pred CCCEEEEEEEEEECCCCCC-------CCCCCEEEEEEECCEE-EEEEEECC-CCCCCCCCEEEEEECCCCCCCCCEEEEE
T ss_conf 8848999999805899889-------9989949999999876-78340469-9899617579998316565778889999
Q ss_pred EEECCCCC-CEEEEEEEEECCCCCCCCEEEEEEE---CCCCCCCCCCCCCEEEEEEEEEECCC
Q ss_conf 99689889-6038999980533468854654898---55798986899872999998641256
Q 003523 82 IKNDNPVG-AILIGRAYVPVEDVAKEFVIDRSFD---IRDEEYKNIPGGSKIHVMLQFVHVVN 140 (813)
Q Consensus 82 V~D~d~~g-d~~IG~~~ipl~~l~~g~~~~~w~~---L~~~~gk~~~~~g~i~l~l~f~p~~~ 140 (813)
|+|++.++ +++||.+.|++.++..+...+.|++ |.+..++. ..|+|+++++|.|...
T Consensus 76 V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~--~~G~l~l~~~~~p~~~ 136 (140)
T 2dmh_A 76 VKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQD--TGATIDLVIGYDPPSG 136 (140)
T ss_dssp EEETTCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCE--EEEEEEEEEEECCCBS
T ss_pred EEECCCCCCCCEEEEEEEEHHHHCCCCCCEEEEEEEECCCCCCCC--CCCEEEEEEEEECCCC
T ss_conf 997987779956899999989944479831688516633788988--7878999999978999
No 10
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=1.00 E-value=1 Score=153.05 Aligned_cols=125 Identities=16% Similarity=0.236 Sum_probs=104.0
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECC-----EEEEEEEECCCCCCCCEEEEEEEEEECCCCCEEE
Q ss_conf 31229999999743599999999766765679499999799-----1200001115999998464599997339861699
Q 003523 5 LLHGILIVRIYGIDKLHTGCGFGSCEQIVGTALYATVDLDK-----ARMARTRMITERTSRPHWNQSFRIYCAHRVSHVV 79 (813)
Q Consensus 5 llhG~L~vtI~~Ak~L~~~~~~~~~~~~~~~DpYv~V~l~~-----~~~~rTkvi~~~t~nP~WNE~F~~~v~~~~~~i~ 79 (813)
-..|.|.|+|++|++|++++ ....+||||+|.+.. ....||+++++ +.||+|||+|.|.+......|.
T Consensus 17 ~~~~~L~V~v~~a~~L~~~d------~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~l~ 89 (153)
T 3b7y_A 17 ENSRIVRVRVIAGIGLAKKD------ILGASDPYVRVTLYDPMNGVLTSVQTKTIKK-SLNPKWNEEILFRVHPQQHRLL 89 (153)
T ss_dssp TTCEEEEEEEEEEESCC-------------CCEEEEEEEEETTTEEEEEEECCCCSS-CSSCCCCEEEEEEECTTTCEEE
T ss_pred CCCCEEEEEEEEEECCCCCC------CCCCCCCEEEEEEECCCCCCCEEEECCCCCC-CCCCCCCCEEEEEECCCCCEEE
T ss_conf 87318999999856898888------8989781799999778886200046750659-9998999889998339889899
Q ss_pred EEEEECCCCC-CEEEEEEEEECCCCCCCCE------EEEEEECCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 9999689889-6038999980533468854------65489855798986899872999998641
Q 003523 80 FTIKNDNPVG-AILIGRAYVPVEDVAKEFV------IDRSFDIRDEEYKNIPGGSKIHVMLQFVH 137 (813)
Q Consensus 80 i~V~D~d~~g-d~~IG~~~ipl~~l~~g~~------~~~w~~L~~~~gk~~~~~g~i~l~l~f~p 137 (813)
|+|+|++.++ +++||.+.|++.++..+.. .+.||+|....++. +..|+|+++++|.|
T Consensus 90 ~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 90 FEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKS-RVKGYLRLKMTYLP 153 (153)
T ss_dssp EEEEECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTC-CCCSEEEEEEEECC
T ss_pred EEEEECCCCCCCCEEEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEEEEEEEEC
T ss_conf 99998999968970599999989924479842002440103134455799-74359999999959
Done!