Query 003524
Match_columns 813
No_of_seqs 749 out of 3413
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 01:04:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003524.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003524hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4660 Protein Mei2, essentia 100.0 2E-75 4.3E-80 643.5 26.7 518 85-792 2-524 (549)
2 PF04059 RRM_2: RNA recognitio 100.0 2.4E-46 5.1E-51 337.1 10.5 97 649-745 1-97 (97)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.2E-33 6.9E-38 308.9 26.2 240 70-309 4-351 (352)
4 KOG0117 Heterogeneous nuclear 100.0 1.5E-31 3.3E-36 288.3 28.1 242 62-311 76-335 (506)
5 TIGR01628 PABP-1234 polyadenyl 100.0 5.7E-32 1.2E-36 317.6 25.3 265 71-335 2-311 (562)
6 TIGR01628 PABP-1234 polyadenyl 100.0 2.2E-30 4.7E-35 304.3 26.9 245 69-314 88-371 (562)
7 TIGR01648 hnRNP-R-Q heterogene 100.0 4E-30 8.6E-35 297.1 24.2 235 66-309 55-309 (578)
8 KOG0145 RNA-binding protein EL 100.0 9E-31 2E-35 265.3 15.3 247 44-307 36-358 (360)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 6E-29 1.3E-33 286.8 26.2 263 70-335 3-420 (481)
10 KOG0145 RNA-binding protein EL 100.0 1.1E-29 2.4E-34 257.5 15.1 212 145-382 39-268 (360)
11 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.9E-27 6.3E-32 261.5 34.1 160 146-309 2-173 (352)
12 TIGR01622 SF-CC1 splicing fact 100.0 6.9E-27 1.5E-31 267.7 26.0 238 69-306 89-447 (457)
13 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.3E-26 2.8E-31 267.4 24.8 162 146-307 274-480 (481)
14 TIGR01659 sex-lethal sex-letha 99.9 7.3E-27 1.6E-31 257.6 21.1 163 143-309 103-277 (346)
15 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.7E-26 3.6E-31 267.9 24.1 238 69-306 175-501 (509)
16 KOG0148 Apoptosis-promoting RN 99.9 1.5E-26 3.3E-31 236.5 19.7 163 147-310 62-241 (321)
17 KOG0144 RNA-binding protein CU 99.9 4.1E-25 8.8E-30 237.8 14.3 240 70-309 35-506 (510)
18 TIGR01645 half-pint poly-U bin 99.9 1.7E-24 3.7E-29 250.8 20.0 163 146-308 106-285 (612)
19 KOG0144 RNA-binding protein CU 99.9 1.3E-23 2.7E-28 226.3 24.1 164 145-311 32-210 (510)
20 KOG0127 Nucleolar protein fibr 99.9 7.3E-24 1.6E-28 233.2 20.5 242 70-311 6-382 (678)
21 TIGR01645 half-pint poly-U bin 99.9 9E-23 2E-27 236.6 26.4 153 68-220 106-282 (612)
22 KOG0123 Polyadenylate-binding 99.9 6.2E-23 1.3E-27 227.8 21.1 252 72-334 4-295 (369)
23 TIGR01622 SF-CC1 splicing fact 99.9 5.9E-23 1.3E-27 235.3 20.6 163 143-306 85-265 (457)
24 TIGR01648 hnRNP-R-Q heterogene 99.9 2.3E-22 5E-27 232.9 19.9 180 146-335 57-261 (578)
25 KOG0117 Heterogeneous nuclear 99.9 4.3E-22 9.4E-27 215.6 17.3 182 145-336 81-286 (506)
26 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.2E-21 2.7E-26 227.3 19.9 163 143-307 171-375 (509)
27 KOG0131 Splicing factor 3b, su 99.9 3.4E-21 7.4E-26 187.8 12.6 163 145-310 7-180 (203)
28 KOG0123 Polyadenylate-binding 99.8 2.1E-20 4.5E-25 207.8 15.6 237 72-311 79-353 (369)
29 KOG0109 RNA-binding protein LA 99.8 7.7E-21 1.7E-25 196.5 11.0 148 148-307 3-150 (346)
30 KOG0127 Nucleolar protein fibr 99.8 9.5E-20 2.1E-24 201.0 15.0 162 148-309 6-198 (678)
31 TIGR01659 sex-lethal sex-letha 99.8 1.9E-19 4E-24 199.0 16.3 154 69-222 107-275 (346)
32 KOG0110 RNA-binding protein (R 99.8 3.1E-19 6.6E-24 203.0 16.2 161 149-309 517-695 (725)
33 KOG0147 Transcriptional coacti 99.8 4.1E-19 8.9E-24 197.5 14.0 235 71-305 181-526 (549)
34 KOG0146 RNA-binding protein ET 99.8 6E-19 1.3E-23 180.3 8.9 167 146-312 18-370 (371)
35 KOG0124 Polypyrimidine tract-b 99.8 3E-18 6.5E-23 181.2 10.7 157 147-305 113-288 (544)
36 KOG0148 Apoptosis-promoting RN 99.7 1.2E-17 2.5E-22 171.7 11.9 160 145-334 4-189 (321)
37 KOG0124 Polypyrimidine tract-b 99.7 4.9E-17 1.1E-21 172.1 15.3 237 68-304 112-532 (544)
38 KOG4206 Spliceosomal protein s 99.7 1E-16 2.2E-21 162.3 16.1 162 144-305 6-220 (221)
39 KOG4212 RNA-binding protein hn 99.7 1.2E-14 2.5E-19 157.3 31.1 160 146-305 43-292 (608)
40 KOG1190 Polypyrimidine tract-b 99.7 7.8E-16 1.7E-20 165.6 15.6 236 70-308 29-374 (492)
41 KOG4205 RNA-binding protein mu 99.6 1.2E-15 2.6E-20 164.9 9.9 162 146-309 5-178 (311)
42 KOG0147 Transcriptional coacti 99.6 5.5E-16 1.2E-20 172.8 5.7 162 143-305 175-356 (549)
43 KOG0105 Alternative splicing f 99.6 1.3E-14 2.9E-19 141.9 13.7 149 145-295 4-176 (241)
44 KOG4212 RNA-binding protein hn 99.5 2.2E-13 4.8E-18 147.6 19.0 70 233-304 537-608 (608)
45 KOG0110 RNA-binding protein (R 99.5 5.1E-14 1.1E-18 160.9 14.4 191 144-335 382-639 (725)
46 KOG0109 RNA-binding protein LA 99.5 3.5E-14 7.6E-19 147.6 8.7 147 69-224 2-152 (346)
47 KOG0131 Splicing factor 3b, su 99.5 6.1E-14 1.3E-18 137.5 7.4 157 70-226 10-181 (203)
48 KOG0106 Alternative splicing f 99.5 6.1E-14 1.3E-18 143.5 7.0 150 148-303 2-167 (216)
49 KOG1190 Polypyrimidine tract-b 99.5 1.4E-12 3E-17 140.9 17.4 160 147-306 297-490 (492)
50 PLN03134 glycine-rich RNA-bind 99.4 1E-12 2.2E-17 128.3 12.0 81 144-224 31-116 (144)
51 PLN03134 glycine-rich RNA-bind 99.4 6.4E-13 1.4E-17 129.8 10.5 78 231-308 33-115 (144)
52 KOG1457 RNA binding protein (c 99.4 1.5E-12 3.2E-17 131.1 12.2 150 146-295 33-274 (284)
53 KOG1548 Transcription elongati 99.4 7E-12 1.5E-16 133.4 15.8 163 145-307 132-352 (382)
54 KOG4205 RNA-binding protein mu 99.3 2.6E-12 5.6E-17 139.2 10.4 156 70-226 7-180 (311)
55 KOG1456 Heterogeneous nuclear 99.3 5.6E-11 1.2E-15 127.2 19.5 232 71-306 33-362 (494)
56 KOG0120 Splicing factor U2AF, 99.3 1.4E-11 3.1E-16 139.5 16.0 236 70-307 176-492 (500)
57 PF00076 RRM_1: RNA recognitio 99.3 9.5E-12 2.1E-16 104.5 8.3 66 235-300 1-70 (70)
58 PF00076 RRM_1: RNA recognitio 99.3 1.2E-11 2.6E-16 104.0 8.0 66 150-215 1-70 (70)
59 KOG0107 Alternative splicing f 99.3 7.2E-12 1.6E-16 122.4 7.0 77 232-308 10-86 (195)
60 KOG0107 Alternative splicing f 99.2 1.5E-11 3.2E-16 120.2 7.1 77 146-222 9-85 (195)
61 KOG4211 Splicing factor hnRNP- 99.2 1.4E-10 3E-15 128.6 14.9 158 147-307 10-182 (510)
62 COG0724 RNA-binding proteins ( 99.2 9E-11 1.9E-15 121.8 12.8 119 147-265 115-258 (306)
63 KOG4211 Splicing factor hnRNP- 99.2 2.3E-10 5E-15 126.9 15.1 228 70-301 11-352 (510)
64 KOG1365 RNA-binding protein Fu 99.2 1.6E-10 3.5E-15 124.0 13.1 235 72-308 63-363 (508)
65 KOG0114 Predicted RNA-binding 99.2 1.3E-10 2.8E-15 104.6 10.3 82 231-312 17-100 (124)
66 KOG0125 Ataxin 2-binding prote 99.2 5.6E-11 1.2E-15 125.8 8.6 99 205-307 73-174 (376)
67 KOG0122 Translation initiation 99.2 8.7E-11 1.9E-15 120.2 8.8 77 231-307 188-269 (270)
68 KOG0122 Translation initiation 99.1 1.9E-10 4E-15 117.8 10.5 78 145-222 187-269 (270)
69 PLN03120 nucleic acid binding 99.1 2.1E-10 4.7E-15 120.5 9.9 74 232-306 4-79 (260)
70 KOG0121 Nuclear cap-binding pr 99.1 1.2E-10 2.7E-15 108.4 6.7 75 145-219 34-113 (153)
71 KOG4660 Protein Mei2, essentia 99.1 8.8E-11 1.9E-15 132.0 6.8 163 143-308 71-251 (549)
72 KOG0114 Predicted RNA-binding 99.1 4.3E-10 9.3E-15 101.3 9.7 80 144-223 15-96 (124)
73 PLN03120 nucleic acid binding 99.1 3.8E-10 8.3E-15 118.7 10.6 75 147-222 4-80 (260)
74 KOG0125 Ataxin 2-binding prote 99.1 2.7E-10 5.9E-15 120.7 9.0 79 145-223 94-175 (376)
75 PF14259 RRM_6: RNA recognitio 99.1 3E-10 6.5E-15 96.3 7.7 66 235-300 1-70 (70)
76 KOG1456 Heterogeneous nuclear 99.1 1.4E-09 2.9E-14 116.8 14.3 171 139-310 23-202 (494)
77 smart00362 RRM_2 RNA recogniti 99.1 4.6E-10 1E-14 93.0 8.6 69 234-302 1-72 (72)
78 PF13893 RRM_5: RNA recognitio 99.1 5.1E-10 1.1E-14 91.3 8.0 56 249-304 1-56 (56)
79 PF14259 RRM_6: RNA recognitio 99.1 4.1E-10 8.9E-15 95.5 7.5 66 150-215 1-70 (70)
80 KOG0105 Alternative splicing f 99.0 3.7E-10 8.1E-15 111.1 6.3 78 231-308 5-84 (241)
81 KOG0121 Nuclear cap-binding pr 99.0 5.2E-10 1.1E-14 104.3 6.3 76 231-306 35-115 (153)
82 PLN03213 repressor of silencin 99.0 7.9E-10 1.7E-14 121.8 8.8 77 231-307 9-88 (759)
83 smart00362 RRM_2 RNA recogniti 99.0 1.6E-09 3.4E-14 89.8 8.4 69 149-217 1-72 (72)
84 KOG0149 Predicted RNA-binding 99.0 8.6E-10 1.9E-14 112.7 7.7 76 144-220 9-89 (247)
85 KOG4207 Predicted splicing fac 99.0 4.6E-10 9.9E-15 112.3 5.5 76 232-307 13-93 (256)
86 KOG0113 U1 small nuclear ribon 99.0 2.2E-09 4.7E-14 112.8 9.5 78 143-220 97-179 (335)
87 KOG4207 Predicted splicing fac 98.9 1.2E-09 2.7E-14 109.2 7.1 80 141-220 7-91 (256)
88 KOG0113 U1 small nuclear ribon 98.9 2.5E-09 5.4E-14 112.3 9.6 91 218-308 87-182 (335)
89 cd00590 RRM RRM (RNA recogniti 98.9 4.1E-09 9E-14 87.7 9.0 70 234-303 1-74 (74)
90 smart00360 RRM RNA recognition 98.9 3.3E-09 7.2E-14 87.4 7.5 66 237-302 1-71 (71)
91 PLN03121 nucleic acid binding 98.9 3.7E-09 8.1E-14 109.7 9.5 73 232-305 5-79 (243)
92 KOG0111 Cyclophilin-type pepti 98.9 8.8E-10 1.9E-14 111.0 4.3 81 231-311 9-94 (298)
93 PLN03213 repressor of silencin 98.9 3.6E-09 7.8E-14 116.7 9.3 117 145-264 8-135 (759)
94 KOG0149 Predicted RNA-binding 98.9 2E-09 4.4E-14 110.0 6.8 78 230-308 10-92 (247)
95 KOG0111 Cyclophilin-type pepti 98.9 1.1E-09 2.3E-14 110.4 4.7 81 145-225 8-93 (298)
96 PLN03121 nucleic acid binding 98.9 5.2E-09 1.1E-13 108.6 9.8 73 147-220 5-79 (243)
97 smart00360 RRM RNA recognition 98.9 6.2E-09 1.3E-13 85.8 7.7 66 152-217 1-71 (71)
98 cd00590 RRM RRM (RNA recogniti 98.9 1E-08 2.2E-13 85.4 8.8 70 149-218 1-74 (74)
99 KOG0130 RNA-binding protein RB 98.9 3.4E-09 7.4E-14 99.6 6.3 79 229-307 69-152 (170)
100 PF13893 RRM_5: RNA recognitio 98.9 5.9E-09 1.3E-13 84.9 6.9 56 164-219 1-56 (56)
101 KOG0129 Predicted RNA-binding 98.8 4.3E-08 9.3E-13 109.9 14.8 142 144-288 256-432 (520)
102 COG0724 RNA-binding proteins ( 98.8 1.1E-08 2.4E-13 106.0 9.3 75 232-306 115-194 (306)
103 KOG0112 Large RNA-binding prot 98.8 5.2E-09 1.1E-13 122.9 4.9 159 145-310 370-534 (975)
104 KOG0126 Predicted RNA-binding 98.7 1.3E-09 2.8E-14 107.2 -0.6 75 230-304 33-112 (219)
105 KOG0108 mRNA cleavage and poly 98.7 1.7E-08 3.7E-13 114.1 8.1 79 233-311 19-102 (435)
106 KOG0108 mRNA cleavage and poly 98.7 1.9E-08 4.2E-13 113.7 7.4 76 148-223 19-99 (435)
107 KOG0126 Predicted RNA-binding 98.7 2.4E-09 5.3E-14 105.3 -0.5 76 145-220 33-113 (219)
108 KOG0132 RNA polymerase II C-te 98.7 3.7E-08 8.1E-13 114.2 8.6 77 146-223 420-496 (894)
109 KOG0130 RNA-binding protein RB 98.7 3.2E-08 6.9E-13 93.2 6.3 79 144-222 69-152 (170)
110 smart00361 RRM_1 RNA recogniti 98.7 5.2E-08 1.1E-12 83.4 7.2 57 246-302 2-70 (70)
111 KOG4206 Spliceosomal protein s 98.6 2.1E-07 4.6E-12 95.1 11.9 150 71-220 11-220 (221)
112 KOG0120 Splicing factor U2AF, 98.6 6.2E-08 1.3E-12 110.4 8.3 165 145-311 173-373 (500)
113 KOG0132 RNA polymerase II C-te 98.6 6.8E-08 1.5E-12 112.1 8.5 80 231-311 420-499 (894)
114 KOG0146 RNA-binding protein ET 98.5 1.1E-07 2.5E-12 98.4 5.8 80 145-224 283-367 (371)
115 smart00361 RRM_1 RNA recogniti 98.5 2.4E-07 5.2E-12 79.2 6.9 56 161-216 2-69 (70)
116 KOG0153 Predicted RNA-binding 98.5 3.6E-07 7.8E-12 98.1 8.4 89 133-222 214-303 (377)
117 KOG0153 Predicted RNA-binding 98.5 3.4E-07 7.4E-12 98.3 7.9 78 228-306 224-302 (377)
118 KOG1457 RNA binding protein (c 98.5 9.5E-07 2.1E-11 89.8 10.4 63 148-210 211-274 (284)
119 KOG4454 RNA binding protein (R 98.4 2.6E-07 5.7E-12 93.6 5.2 143 145-301 7-157 (267)
120 KOG0128 RNA-binding protein SA 98.4 5.4E-08 1.2E-12 114.2 0.3 138 148-306 668-814 (881)
121 KOG0106 Alternative splicing f 98.4 4.4E-07 9.5E-12 93.5 6.7 143 69-219 1-168 (216)
122 KOG0415 Predicted peptidyl pro 98.3 7.9E-07 1.7E-11 95.4 5.9 77 231-307 238-319 (479)
123 KOG0415 Predicted peptidyl pro 98.3 8E-07 1.7E-11 95.3 5.6 78 144-221 236-318 (479)
124 KOG4210 Nuclear localization s 98.2 1.4E-06 3E-11 94.4 6.3 164 145-309 86-266 (285)
125 KOG4208 Nucleolar RNA-binding 98.2 4.4E-06 9.6E-11 84.5 8.1 80 143-222 45-130 (214)
126 KOG4208 Nucleolar RNA-binding 98.2 4.8E-06 1E-10 84.2 7.8 79 229-307 46-130 (214)
127 KOG0129 Predicted RNA-binding 98.2 1.7E-05 3.6E-10 89.6 12.9 141 63-203 253-432 (520)
128 KOG0226 RNA-binding proteins [ 98.1 2.4E-06 5.3E-11 88.5 5.2 158 149-306 98-269 (290)
129 KOG4661 Hsp27-ERE-TATA-binding 98.1 7.5E-06 1.6E-10 92.2 8.6 76 145-220 403-483 (940)
130 KOG4661 Hsp27-ERE-TATA-binding 98.1 5.6E-06 1.2E-10 93.2 6.7 74 233-306 406-484 (940)
131 KOG1548 Transcription elongati 98.1 2.6E-05 5.6E-10 84.1 11.1 152 68-220 133-350 (382)
132 KOG2193 IGF-II mRNA-binding pr 98.0 5E-07 1.1E-11 98.7 -2.9 149 148-305 2-155 (584)
133 KOG0533 RRM motif-containing p 98.0 2.1E-05 4.6E-10 82.8 8.3 78 145-222 81-162 (243)
134 KOG0151 Predicted splicing reg 97.9 2.8E-05 6E-10 90.1 8.8 85 137-221 164-256 (877)
135 PF03467 Smg4_UPF3: Smg-4/UPF3 97.9 9.4E-06 2E-10 82.1 3.9 90 647-736 5-99 (176)
136 KOG0151 Predicted splicing reg 97.8 2.1E-05 4.7E-10 91.0 6.2 78 229-306 171-256 (877)
137 KOG0112 Large RNA-binding prot 97.8 3.1E-05 6.8E-10 91.9 6.8 152 69-222 372-531 (975)
138 KOG0533 RRM motif-containing p 97.8 6.8E-05 1.5E-09 79.1 8.5 78 231-308 82-163 (243)
139 KOG0116 RasGAP SH3 binding pro 97.8 3.3E-05 7.1E-10 87.4 6.5 75 146-221 287-366 (419)
140 KOG1365 RNA-binding protein Fu 97.7 0.00028 6.1E-09 76.9 12.5 153 145-299 58-235 (508)
141 KOG0116 RasGAP SH3 binding pro 97.7 5.6E-05 1.2E-09 85.6 6.7 75 233-308 289-368 (419)
142 KOG0226 RNA-binding proteins [ 97.7 7.4E-05 1.6E-09 77.7 6.5 76 145-220 188-268 (290)
143 KOG4676 Splicing factor, argin 97.6 2E-05 4.4E-10 85.8 2.0 159 148-308 8-227 (479)
144 KOG0128 RNA-binding protein SA 97.6 2.4E-05 5.2E-10 92.5 2.6 149 56-221 659-814 (881)
145 PF11608 Limkain-b1: Limkain b 97.6 0.00018 3.8E-09 63.4 7.1 69 233-306 3-76 (90)
146 PF04059 RRM_2: RNA recognitio 97.6 0.00035 7.5E-09 63.9 8.6 73 148-220 2-85 (97)
147 KOG4210 Nuclear localization s 97.6 0.00015 3.3E-09 78.7 7.4 172 48-223 70-265 (285)
148 KOG4209 Splicing factor RNPS1, 97.5 0.00011 2.5E-09 77.3 5.8 79 228-307 97-180 (231)
149 KOG4307 RNA binding protein RB 97.4 0.00031 6.7E-09 81.5 7.4 161 145-306 309-513 (944)
150 KOG4454 RNA binding protein (R 97.4 8.7E-05 1.9E-09 75.7 2.7 76 231-307 8-87 (267)
151 PF11608 Limkain-b1: Limkain b 97.4 0.00058 1.3E-08 60.2 7.3 68 148-220 3-75 (90)
152 PF08777 RRM_3: RNA binding mo 97.3 0.00064 1.4E-08 63.2 6.6 70 234-304 3-77 (105)
153 KOG4209 Splicing factor RNPS1, 97.2 0.00036 7.9E-09 73.6 5.1 77 143-220 97-178 (231)
154 COG5175 MOT2 Transcriptional r 97.0 0.0019 4.2E-08 69.5 8.1 76 232-307 114-203 (480)
155 PF14605 Nup35_RRM_2: Nup53/35 96.6 0.0041 8.8E-08 50.6 5.3 52 233-286 2-53 (53)
156 PF05172 Nup35_RRM: Nup53/35/4 96.6 0.0046 9.9E-08 56.9 5.9 74 231-306 5-91 (100)
157 COG5175 MOT2 Transcriptional r 96.5 0.0041 9E-08 67.0 6.2 75 147-221 114-202 (480)
158 KOG1855 Predicted RNA-binding 96.5 0.0037 8.1E-08 69.5 5.9 67 226-292 225-309 (484)
159 KOG2193 IGF-II mRNA-binding pr 96.4 0.0034 7.4E-08 69.5 4.4 101 233-336 2-107 (584)
160 PF08777 RRM_3: RNA binding mo 96.3 0.0096 2.1E-07 55.3 6.8 59 148-207 2-60 (105)
161 KOG0115 RNA-binding protein p5 96.3 0.0079 1.7E-07 63.2 6.7 90 195-295 5-98 (275)
162 PF14605 Nup35_RRM_2: Nup53/35 96.3 0.009 1.9E-07 48.6 5.6 52 148-201 2-53 (53)
163 KOG1995 Conserved Zn-finger pr 96.3 0.0038 8.2E-08 68.3 4.1 78 231-308 65-155 (351)
164 KOG3152 TBP-binding protein, a 96.1 0.0033 7.2E-08 65.8 2.4 68 231-298 73-157 (278)
165 KOG4307 RNA binding protein RB 95.9 0.018 4E-07 67.3 7.5 71 148-218 868-943 (944)
166 KOG1995 Conserved Zn-finger pr 95.7 0.0094 2E-07 65.3 4.0 77 145-221 64-153 (351)
167 KOG1855 Predicted RNA-binding 95.7 0.01 2.2E-07 66.1 4.3 75 143-217 227-319 (484)
168 KOG2314 Translation initiation 95.6 0.042 9.1E-07 63.2 9.0 72 147-218 58-140 (698)
169 KOG1295 Nonsense-mediated deca 95.6 0.0065 1.4E-07 67.2 2.3 73 647-720 5-79 (376)
170 KOG2202 U2 snRNP splicing fact 95.5 0.0068 1.5E-07 63.7 2.1 63 247-309 83-150 (260)
171 PF08952 DUF1866: Domain of un 95.3 0.063 1.4E-06 52.5 7.6 74 231-308 26-108 (146)
172 KOG2314 Translation initiation 95.2 0.036 7.7E-07 63.8 6.7 72 231-302 57-139 (698)
173 KOG3152 TBP-binding protein, a 95.0 0.016 3.5E-07 60.9 3.0 68 146-213 73-157 (278)
174 KOG1996 mRNA splicing factor [ 94.7 0.06 1.3E-06 57.5 6.1 61 246-306 300-366 (378)
175 PF05172 Nup35_RRM: Nup53/35/4 94.6 0.066 1.4E-06 49.4 5.4 73 146-220 5-90 (100)
176 PF15023 DUF4523: Protein of u 94.5 0.18 3.9E-06 48.9 8.4 83 135-220 74-160 (166)
177 KOG0804 Cytoplasmic Zn-finger 94.5 0.12 2.6E-06 58.3 8.2 81 649-733 74-154 (493)
178 PF07576 BRAP2: BRCA1-associat 94.5 0.23 5.1E-06 46.6 8.9 85 648-735 11-96 (110)
179 KOG2202 U2 snRNP splicing fact 94.1 0.027 5.8E-07 59.4 2.0 58 163-220 84-146 (260)
180 KOG4849 mRNA cleavage factor I 93.5 0.069 1.5E-06 58.2 3.8 71 147-217 80-157 (498)
181 PF15023 DUF4523: Protein of u 93.4 0.29 6.3E-06 47.6 7.4 75 229-306 83-161 (166)
182 KOG2416 Acinus (induces apopto 92.5 0.091 2E-06 60.9 3.2 76 232-308 444-523 (718)
183 PF04847 Calcipressin: Calcipr 92.4 0.23 5E-06 50.8 5.7 63 245-308 8-72 (184)
184 KOG4676 Splicing factor, argin 91.9 0.16 3.4E-06 56.4 4.0 71 233-304 8-86 (479)
185 PF08952 DUF1866: Domain of un 91.6 0.4 8.7E-06 47.0 6.1 74 145-222 25-107 (146)
186 KOG2591 c-Mpl binding protein, 91.6 0.4 8.7E-06 55.4 6.9 96 195-302 148-247 (684)
187 KOG2416 Acinus (induces apopto 91.5 0.17 3.8E-06 58.7 4.0 77 142-219 439-519 (718)
188 PF08675 RNA_bind: RNA binding 90.9 0.86 1.9E-05 40.6 6.8 54 233-290 10-63 (87)
189 KOG4849 mRNA cleavage factor I 90.6 0.22 4.7E-06 54.5 3.5 74 233-306 81-161 (498)
190 PF10309 DUF2414: Protein of u 90.6 1 2.3E-05 37.9 6.7 54 232-289 5-62 (62)
191 KOG2591 c-Mpl binding protein, 89.8 0.62 1.3E-05 53.9 6.3 78 138-217 166-247 (684)
192 PF03467 Smg4_UPF3: Smg-4/UPF3 88.7 0.57 1.2E-05 47.6 4.7 75 231-305 6-96 (176)
193 KOG1996 mRNA splicing factor [ 88.6 0.81 1.8E-05 49.2 5.8 60 161-220 300-365 (378)
194 KOG4285 Mitotic phosphoprotein 88.6 1.6 3.4E-05 47.4 7.9 73 232-307 197-270 (350)
195 PF10309 DUF2414: Protein of u 87.8 2.5 5.4E-05 35.7 7.0 51 148-204 6-62 (62)
196 KOG2068 MOT2 transcription fac 87.0 0.27 5.9E-06 53.9 1.2 78 232-309 77-165 (327)
197 PF08675 RNA_bind: RNA binding 84.9 2.4 5.2E-05 37.9 5.7 55 148-206 10-64 (87)
198 KOG2135 Proteins containing th 82.8 0.76 1.7E-05 52.4 2.3 73 235-309 375-448 (526)
199 KOG2068 MOT2 transcription fac 82.5 0.6 1.3E-05 51.3 1.3 76 147-222 77-163 (327)
200 PF04847 Calcipressin: Calcipr 80.4 2.7 5.8E-05 43.1 5.1 62 160-222 8-71 (184)
201 KOG4574 RNA-binding protein (c 80.1 1.1 2.4E-05 54.3 2.5 73 234-307 300-374 (1007)
202 KOG0115 RNA-binding protein p5 79.7 1.9 4E-05 45.9 3.7 59 148-206 32-94 (275)
203 PF07292 NID: Nmi/IFP 35 domai 79.6 2.2 4.8E-05 38.5 3.7 67 187-254 1-74 (88)
204 PF14111 DUF4283: Domain of un 77.1 3.1 6.6E-05 40.5 4.2 105 158-266 28-139 (153)
205 PF03880 DbpA: DbpA RNA bindin 76.2 8.8 0.00019 33.2 6.4 58 243-304 12-74 (74)
206 PF07576 BRAP2: BRCA1-associat 76.0 19 0.00042 33.8 9.0 64 233-296 13-81 (110)
207 KOG2135 Proteins containing th 74.7 1.8 3.8E-05 49.6 2.0 78 144-223 369-447 (526)
208 KOG4285 Mitotic phosphoprotein 72.3 5.9 0.00013 43.2 5.1 63 148-213 198-260 (350)
209 KOG4019 Calcineurin-mediated s 68.1 7.3 0.00016 39.6 4.4 74 234-308 12-91 (193)
210 PF11767 SET_assoc: Histone ly 67.7 19 0.0004 30.9 6.2 55 243-301 11-65 (66)
211 KOG4574 RNA-binding protein (c 65.7 4.2 9.1E-05 49.6 2.6 74 149-223 300-375 (1007)
212 KOG2253 U1 snRNP complex, subu 63.7 6.2 0.00013 47.0 3.5 69 231-303 39-107 (668)
213 PF10567 Nab6_mRNP_bdg: RNA-re 63.4 1.2E+02 0.0027 33.3 12.7 145 145-290 13-212 (309)
214 KOG2253 U1 snRNP complex, subu 58.1 7.9 0.00017 46.2 3.0 71 144-218 37-107 (668)
215 PF11767 SET_assoc: Histone ly 57.7 33 0.00072 29.4 5.9 55 158-216 11-65 (66)
216 KOG2318 Uncharacterized conser 53.3 52 0.0011 39.1 8.4 78 142-219 169-305 (650)
217 KOG0804 Cytoplasmic Zn-finger 42.5 82 0.0018 36.5 7.7 65 232-296 74-142 (493)
218 KOG2318 Uncharacterized conser 41.4 88 0.0019 37.3 7.9 74 231-304 173-305 (650)
219 PF03880 DbpA: DbpA RNA bindin 40.8 99 0.0021 26.6 6.5 59 157-219 11-74 (74)
220 PRK14548 50S ribosomal protein 38.8 60 0.0013 29.1 4.9 55 234-288 22-80 (84)
221 TIGR03636 L23_arch archaeal ri 36.1 75 0.0016 28.0 5.0 55 234-288 15-73 (77)
222 KOG4410 5-formyltetrahydrofola 34.0 59 0.0013 35.3 4.7 48 147-195 330-378 (396)
223 KOG4483 Uncharacterized conser 30.8 94 0.002 35.4 5.7 55 232-288 391-446 (528)
224 KOG2891 Surface glycoprotein [ 30.0 22 0.00049 38.2 0.8 62 148-209 150-247 (445)
225 PF07292 NID: Nmi/IFP 35 domai 29.3 23 0.00051 32.0 0.7 26 144-169 49-74 (88)
226 COG5105 MIH1 Mitotic inducer, 22.5 2.5E+02 0.0054 31.4 7.0 97 660-764 243-344 (427)
227 KOG4019 Calcineurin-mediated s 22.4 72 0.0016 32.7 2.7 74 148-222 11-90 (193)
228 COG5594 Uncharacterized integr 22.1 1.7E+02 0.0036 36.5 6.2 30 145-174 206-236 (827)
229 PF02714 DUF221: Domain of unk 20.0 1.5E+02 0.0033 32.5 5.1 57 187-255 1-57 (325)
No 1
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2e-75 Score=643.54 Aligned_cols=518 Identities=53% Similarity=0.793 Sum_probs=391.6
Q ss_pred hhHHhhcCCCceeeeccCCCCCcccEEEEEeCChhhhcccCCcccCCCCCccCCCCCCCCCCCCEEEEcCCCCCCCHHHH
Q 003524 85 EDYDIFGSGGGMELEGEPQESLSMSMSKISISDSASGNGLLHYSVPNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSEL 164 (813)
Q Consensus 85 el~~lF~~~G~v~l~~D~~t~~s~G~afV~f~d~e~A~~~~~~~~~n~~~~v~g~~~~~e~~srtLfVgNLP~~vTeedL 164 (813)
++|++|...|++++..|.....+. . ....+.+..+..++|..+ +++ || .+|
T Consensus 2 ~d~~lf~~~G~~el~~~~~~~~~~---------------~--~~~~n~~~~~~~~~P~~~--s~~-~~---------~~l 52 (549)
T KOG4660|consen 2 EDCDLFSSGGGMELDADSFDNLSV---------------R--NSDRNSAGFVFPEHPPGE--SRT-FV---------SEL 52 (549)
T ss_pred CccccccCCCCCCcccccccchhh---------------c--ccccCCCccccCCCCCCC--CCC-Ch---------hhH
Confidence 578999999999887765432221 0 112244556667777776 666 77 788
Q ss_pred HHHHhhcCCEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecCCCCCCCCCcCCcceeeeeccCCCC
Q 003524 165 RALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSV 244 (813)
Q Consensus 165 ~~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~v 244 (813)
-.+|+.| ++.+. .+.+.+++.++++|+|.|||..|
T Consensus 53 ~a~f~~~----------------------------------~~p~~-----------~~np~~~~~~~~~L~v~nl~~~V 87 (549)
T KOG4660|consen 53 SALFEPF----------------------------------NKPLR-----------PDNPSEKDMNQGTLVVFNLPRSV 87 (549)
T ss_pred Hhhhhcc----------------------------------CCCCC-----------cCCCCcccCccceEEEEecCCcC
Confidence 8999988 11111 15566778899999999999999
Q ss_pred CHHHHHHHhcccCCeEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcccchhhhccchhccHH
Q 003524 245 SNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELEQD 324 (813)
Q Consensus 245 teedL~~lFs~fG~I~~iri~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak~~~~r~~~~~ql~~~~~~~ 324 (813)
++++|+.+|+.||+|+.|+.+..+++.+||+|.|+.+|++|+++|++.+|.|++|+ ++.+.+++.+-+..
T Consensus 88 sn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k----~~~~~~~~~~~~~~------ 157 (549)
T KOG4660|consen 88 SNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK----RPGGARRAMGLQSG------ 157 (549)
T ss_pred CHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc----CCCcccccchhccc------
Confidence 99999999999999999999999999999999999999999999999999999999 88888777666554
Q ss_pred HHHHHHhhcCCCCCCCCCCCCccCCCCCCCCccccccCCCCCCCCCCCcCCCCCCCccccCCCCCccccccccCCccCcc
Q 003524 325 ESRILQHQVGSPITNSPPGNWVQFSSPIEHNPLQTISKSPNFRNMSPTTSNHMPGLASILHPQVSTLEKIAPIGKDQGRG 404 (813)
Q Consensus 325 ~l~~~f~~~Gsp~a~s~P~~~~~~~~p~~~~~~~~~~~~~~~~~~sP~~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~~~ 404 (813)
..+..++++|.++++|+.|.+ .+.++.++|..... ++...++ +-....+...+.-
T Consensus 158 --~~~~~~~~~p~a~s~pgg~~~---------------~~~~g~l~P~~s~~-------~~~~~~~-~~~~~~~~~~~~~ 212 (549)
T KOG4660|consen 158 --TSFLNHFGSPLANSPPGGWPR---------------GQLFGMLSPTRSSI-------LLEHISS-VDGSSPGRETPLL 212 (549)
T ss_pred --chhhhhccchhhcCCCCCCcC---------------Ccceeeeccchhhh-------hhhcchh-ccCccccccccch
Confidence 567789999999999999951 12233456654332 2222111 1111111222222
Q ss_pred cchhhhhccccccCCCcccccCCCCCCcCCccCCccCCCCCCCCCCCCcccCCCCcccCCCCCCCCCCCCCCcccCCCCC
Q 003524 405 SLMEHALTNTISANGASFQQSNSFSEPKIGLYRGTVSSFGPSPSNGSGVETLSGPQFLWGSPSRYSEHSSSPAWQTSSMG 484 (813)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 484 (813)
.| |.|.+ ....-+|+++++.. |..+++..++.+++++--+|
T Consensus 213 ~h--q~~~~------~~~~~s~a~~~~~~----------G~~~s~~~~v~t~S~~~g~~--------------------- 253 (549)
T KOG4660|consen 213 NH--QRFVE------FADNRSYAFSEPRG----------GFLISNSSGVITFSGPGGVW--------------------- 253 (549)
T ss_pred hh--hhhhh------hccccchhhcccCC----------ceecCCCCceEEecCCCccc---------------------
Confidence 23 33332 11124567777632 56677777888888875445
Q ss_pred CCCCCCCccCCCCCCCCCCCCCCCccccCcCCCCCCCCccccccCCCCCCCCcCCCCccccCCCCCCCCCccccccCCCc
Q 003524 485 HPFSSNGKIHGLPYSGRQGSFLGSSQHHHVGSAPSGVPLERRFGFLPESPETSFMNPVAFCGMGIGQNDGSFMVNMGSRA 564 (813)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsap~~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 564 (813)
+++... .........++|||||+||+ ..+....+++++.+.++++.++.+.
T Consensus 254 n~~~~~---------r~~~~~~~~~~~~hi~~~Ps------------------~~~l~~~~~~~f~~~s~~~~~~~~~-- 304 (549)
T KOG4660|consen 254 NPFPSR---------RQRQNSSSSHYEHHIGSAPS------------------MHHLLSRISVGFNGGSGALEMNSNG-- 304 (549)
T ss_pred CCcccc---------ccccccCcccccCccCCCcc------------------cccccccCccccCCCCCCccccccc--
Confidence 112111 11122344567999999996 1223345667777777776554322
Q ss_pred CCCCC-ccCCCCCCCCCCc-ccccCCCCCCCcccCCCCCCCCCCCccccccc---cccccccccCCCCccccccccccch
Q 003524 565 SVNPG-ITVPRNLSDNGSS-FRVMSSPRLSPVFLGNGPYPGLTPANIEGLYE---RGRSRRIENNNGNQLDSKKQFQLEL 639 (813)
Q Consensus 565 ~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---r~r~rr~~~~~~~~~~~~~~~~~~~ 639 (813)
..|-| .+..+++.+..+. +++.+.++..+.|-+++.+. ...+...+ ..+.||.+. ...+ ...+++.+|+
T Consensus 305 ~~n~g~~~~t~~~~e~~s~n~~~e~~~rv~~~f~~~~~~~----~~~~~~~~~~~~~~~~Rtt~-~i~n-i~n~~~~~dl 378 (549)
T KOG4660|consen 305 QANQGFLTKTGNVTEFNSKNVGMESSPRVPKNFEGRRSYT----SQNDYPVELILNYRDRRTTV-MIKN-IPNKYGQLDL 378 (549)
T ss_pred cCCCCccccCcccccccCCCccccccCCCCcccccccccc----cccccccccccccccchhhh-hhhc-cccchhHHHH
Confidence 33444 4678899888886 99999999999999888652 33444444 677788886 3333 3489999999
Q ss_pred hhhhcCCCcceeEEeecCCCCCCHHHHHHHHHhhCCCcccEEEeeecccccceeEEEEEecCCcccHHHHHHHhcCCccc
Q 003524 640 EKIRSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEAFNGKKWE 719 (813)
Q Consensus 640 ~~i~~g~d~rTTvMirNIPnk~~~~~l~~~id~~~~~~ydf~Ylp~df~~~~n~gyaFin~~~~~~~~~f~~~f~~~~w~ 719 (813)
.+|.+|+|.|||+||||||||||++||++. ||.++|+||||||||||+|+||||||||||++|+++++||++|||++|+
T Consensus 379 ~~Ildge~~rtt~~iknipNK~T~~ml~~~-d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~ 457 (549)
T KOG4660|consen 379 LRILDGECPRTTLMIKNIPNKYTSKMLLAA-DEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWE 457 (549)
T ss_pred HHHHhCcCchhhhHhhccCchhhHHhhhhh-hccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchh
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEEeeecccHHHHHHHhccCcCCCCCCCccceEEcCCCCCCCCccccccCCCCCCcccccCCCCC
Q 003524 720 KFNSEKVASLAYARIQGRAALVAHFQNSSLMNEDKRCRPILFHSEGPEAGDQVTQEQLNSNSVNFQVCPSNGS 792 (813)
Q Consensus 720 ~~~s~k~~~~~~A~iQg~~~l~~~~~~s~~~~~~~~~~p~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (813)
+|+|+|||+|+|||||||++|++|||||++|||++.|+|++|++ ++.|. +|++|... +++.+....+
T Consensus 458 ~FnS~Kia~itYArIQGk~~Li~hFqnS~lm~E~e~y~Pvvf~p--p~dg~---~~~~p~~~-~~~a~~~~s~ 524 (549)
T KOG4660|consen 458 KFNSEKIASITYARIQGKEALIEHFQNSSLMCEDEAYRPVVFSP--PEDGR---EEPEPVKL-NQDAGAGHST 524 (549)
T ss_pred hhcceeeeeeehhhhhchHHHHHHhhcccccccchhcCceEecC--ccccc---ccCccccc-cccCCCCccc
Confidence 99999999999999999999999999999999999999999998 77777 99999988 8776655443
No 2
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=100.00 E-value=2.4e-46 Score=337.14 Aligned_cols=97 Identities=67% Similarity=1.202 Sum_probs=96.3
Q ss_pred ceeEEeecCCCCCCHHHHHHHHHhhCCCcccEEEeeecccccceeEEEEEecCCcccHHHHHHHhcCCcccCCCCccEEE
Q 003524 649 RTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEAFNGKKWEKFNSEKVAS 728 (813)
Q Consensus 649 rTTvMirNIPnk~~~~~l~~~id~~~~~~ydf~Ylp~df~~~~n~gyaFin~~~~~~~~~f~~~f~~~~w~~~~s~k~~~ 728 (813)
|||||||||||||||+||+++||+.++|+||||||||||+++||+|||||||+++++|.+|+++|+|++|+.++|+|||+
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeecccHHHHHHHhc
Q 003524 729 LAYARIQGRAALVAHFQ 745 (813)
Q Consensus 729 ~~~A~iQg~~~l~~~~~ 745 (813)
|+||||||++|||+|||
T Consensus 81 i~yAriQG~~alv~~f~ 97 (97)
T PF04059_consen 81 ISYARIQGKDALVEHFR 97 (97)
T ss_pred EehhHhhCHHHHHHhhC
Confidence 99999999999999997
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=3.2e-33 Score=308.92 Aligned_cols=240 Identities=19% Similarity=0.298 Sum_probs=201.5
Q ss_pred CccccccCCCCCCchhhHHhhcCCCce---eeeccCCCCCcccEEEEEeCChhhhc----ccCCcccCCCCCccCCCCCC
Q 003524 70 DDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHPY 142 (813)
Q Consensus 70 del~l~~Lp~s~gEiel~~lF~~~G~v---~l~~D~~t~~s~G~afV~f~d~e~A~----~~~~~~~~n~~~~v~g~~~~ 142 (813)
+.+||++||.+++|.++.++|+.+|.+ +|+.|..+++++|||||+|.+.+.|. .+.+..+.+..+++....+.
T Consensus 4 ~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~ 83 (352)
T TIGR01661 4 TNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPS 83 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeeccc
Confidence 679999999999999999999999974 57888889999999999999988765 45566666666666554443
Q ss_pred CC-CCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEe-----CCCcceEEEEEEccHHHHHHHHHHhcCCcccc--cee
Q 003524 143 GE-HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR--RKL 214 (813)
Q Consensus 143 ~e-~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~g--r~L 214 (813)
.. ...++|||+|||.++++++|+++|++||.|..+++ .+.++|||||+|.+.++|++|++.|+|..+.| .+|
T Consensus 84 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i 163 (352)
T TIGR01661 84 SDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPI 163 (352)
T ss_pred ccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeE
Confidence 32 35679999999999999999999999999988773 45689999999999999999999999999876 567
Q ss_pred eeeecCCCCCCCCC------------------------------------------------------------------
Q 003524 215 DIHFSIPKDNPSDK------------------------------------------------------------------ 228 (813)
Q Consensus 215 ~V~~a~pk~~~~~~------------------------------------------------------------------ 228 (813)
.|.++........+
T Consensus 164 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (352)
T TIGR01661 164 TVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQR 243 (352)
T ss_pred EEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccccccc
Confidence 88876433210000
Q ss_pred ----------------------cCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEe-----CCCCccEEEEEEcCHHH
Q 003524 229 ----------------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRA 281 (813)
Q Consensus 229 ----------------------~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri-----~~~srG~aFVeF~d~e~ 281 (813)
.....+|||+|||.++++++|+++|++||.|+++++ ++.++|||||+|.+.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~ 323 (352)
T TIGR01661 244 ASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDE 323 (352)
T ss_pred CCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHH
Confidence 000125999999999999999999999999999986 56789999999999999
Q ss_pred HHHHHHHhCCCccCCceEEEEecCCCcc
Q 003524 282 AEAALKSLNRSDIAGKRIKLEPSRPGGA 309 (813)
Q Consensus 282 A~~Ai~~LnG~~i~Gr~I~V~~ak~~~~ 309 (813)
|.+|++.|||..|.||+|+|.|+.++..
T Consensus 324 A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 324 AAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 9999999999999999999999988764
No 4
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.5e-31 Score=288.29 Aligned_cols=242 Identities=20% Similarity=0.334 Sum_probs=207.2
Q ss_pred HHHhhcccCccccccCCCCCCchhhHHhhcCCCc---eeeeccCCCCCcccEEEEEeCChhhhc----ccCCcccCCC-C
Q 003524 62 DELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGG---MELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNG-A 133 (813)
Q Consensus 62 ddl~~~v~del~l~~Lp~s~gEiel~~lF~~~G~---v~l~~D~~t~~s~G~afV~f~d~e~A~----~~~~~~~~n~-~ 133 (813)
+-.....-+|+||+.||+++.|.||+.||...|. ++||+|+.++.++|||||+|++.+.|+ .++++.+..+ .
T Consensus 76 eg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ 155 (506)
T KOG0117|consen 76 EGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKL 155 (506)
T ss_pred cCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCE
Confidence 4444456799999999999999999999999996 789999999999999999999988766 4566666543 2
Q ss_pred CccCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhcCC-EEEEE------eCCCcceEEEEEEccHHHHHHHHHHhcC
Q 003524 134 GTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGD-IRTLY------TACKHRGFVMISYYDIRAARTAMRALQN 206 (813)
Q Consensus 134 ~~v~g~~~~~e~~srtLfVgNLP~~vTeedL~~lFs~fG~-I~~v~------~~~ksrG~AFV~F~d~e~A~~Ai~~Lng 206 (813)
+.+. ....+++|||+|||++.++++|.+.|++.++ |..|. ...++||||||+|++...|..|.++|-.
T Consensus 156 igvc-----~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~ 230 (506)
T KOG0117|consen 156 LGVC-----VSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMP 230 (506)
T ss_pred eEEE-----EeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccC
Confidence 2222 2246899999999999999999999999986 55543 3678999999999999999999988754
Q ss_pred --CccccceeeeeecCCCCCCCCCcC-CcceeeeeccCCCCCHHHHHHHhcccCCeEEEEeCCCCccEEEEEEcCHHHHH
Q 003524 207 --KPLRRRKLDIHFSIPKDNPSDKDL-NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAE 283 (813)
Q Consensus 207 --~~l~gr~L~V~~a~pk~~~~~~~~-~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri~~~srG~aFVeF~d~e~A~ 283 (813)
..+.|..+.|.|+.|...+..+.. .-+.|||+||+.++|+|.|+++|++||.|..|+.. +.||||.|.++++|.
T Consensus 231 g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~---rDYaFVHf~eR~dav 307 (506)
T KOG0117|consen 231 GKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP---RDYAFVHFAEREDAV 307 (506)
T ss_pred CceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc---cceeEEeecchHHHH
Confidence 557899999999999887655433 34689999999999999999999999999999765 569999999999999
Q ss_pred HHHHHhCCCccCCceEEEEecCCCcccc
Q 003524 284 AALKSLNRSDIAGKRIKLEPSRPGGARR 311 (813)
Q Consensus 284 ~Ai~~LnG~~i~Gr~I~V~~ak~~~~r~ 311 (813)
+|++.+||++|.|..|.|.+|+|..+++
T Consensus 308 kAm~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 308 KAMKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred HHHHHhcCceecCceEEEEecCChhhhc
Confidence 9999999999999999999999987665
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=5.7e-32 Score=317.64 Aligned_cols=265 Identities=19% Similarity=0.329 Sum_probs=222.6
Q ss_pred ccccccCCCCCCchhhHHhhcCCCc---eeeeccCCCCCcccEEEEEeCChhhhcc----cCCcccCCCCCccCCCCC--
Q 003524 71 DFDLRGLPSSLEDLEDYDIFGSGGG---MELEGEPQESLSMSMSKISISDSASGNG----LLHYSVPNGAGTVAGEHP-- 141 (813)
Q Consensus 71 el~l~~Lp~s~gEiel~~lF~~~G~---v~l~~D~~t~~s~G~afV~f~d~e~A~~----~~~~~~~n~~~~v~g~~~-- 141 (813)
.+||++|+.+++|.+++++|+.+|. |+|+.|..+++++|||||+|.+.+.|.. +....+.++.+++.+...
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 4799999999999999999999997 4588899999999999999999887762 333335555555544321
Q ss_pred -CCCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEe----CCCcceEEEEEEccHHHHHHHHHHhcCCccccceeee
Q 003524 142 -YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 216 (813)
Q Consensus 142 -~~e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V 216 (813)
......++|||+|||.++++++|+++|++||.|.+|++ .++++|||||+|.+.++|++|++.++|..+.++.|.|
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v 161 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYV 161 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEE
Confidence 12233568999999999999999999999999999873 4678999999999999999999999999999999999
Q ss_pred eecCCCCCC-CCCcCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEe----CCCCccEEEEEEcCHHHHHHHHHHhCC
Q 003524 217 HFSIPKDNP-SDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNR 291 (813)
Q Consensus 217 ~~a~pk~~~-~~~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri----~~~srG~aFVeF~d~e~A~~Ai~~LnG 291 (813)
....++... .......++|||+||+.++|+++|+++|++||+|.++++ .++++|||||+|.+.++|.+|++.|+|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g 241 (562)
T TIGR01628 162 GRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNG 241 (562)
T ss_pred eccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 876655433 123334578999999999999999999999999999876 345688999999999999999999999
Q ss_pred CccC----CceEEEEecCCCccc----------------------chhhhccchhccHHHHHHHHhhcCC
Q 003524 292 SDIA----GKRIKLEPSRPGGAR----------------------RNLMLQLNQELEQDESRILQHQVGS 335 (813)
Q Consensus 292 ~~i~----Gr~I~V~~ak~~~~r----------------------~~~~~ql~~~~~~~~l~~~f~~~Gs 335 (813)
..+. |+.|.|.+++.+..+ ..++.++...+++++++.+|.+||.
T Consensus 242 ~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~ 311 (562)
T TIGR01628 242 KKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGE 311 (562)
T ss_pred cEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCC
Confidence 9999 999999998776554 1366778888999999999999994
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=2.2e-30 Score=304.32 Aligned_cols=245 Identities=19% Similarity=0.321 Sum_probs=200.9
Q ss_pred cCccccccCCCCCCchhhHHhhcCCCcee---eeccCCCCCcccEEEEEeCChhhhcc----cCCcccCCCCCccCCCCC
Q 003524 69 MDDFDLRGLPSSLEDLEDYDIFGSGGGME---LEGEPQESLSMSMSKISISDSASGNG----LLHYSVPNGAGTVAGEHP 141 (813)
Q Consensus 69 ~del~l~~Lp~s~gEiel~~lF~~~G~v~---l~~D~~t~~s~G~afV~f~d~e~A~~----~~~~~~~n~~~~v~g~~~ 141 (813)
...++|++|+.++++.+++++|+.+|.+. +..| .+++++|||||.|.+.+.|.. +++..+.+..+.+.....
T Consensus 88 ~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 88 VGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIK 166 (562)
T ss_pred CCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccc
Confidence 46799999999999999999999999753 4444 467899999999999887762 333333333322221111
Q ss_pred ------CCCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEe----CCCcceEEEEEEccHHHHHHHHHHhcCCccc-
Q 003524 142 ------YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLR- 210 (813)
Q Consensus 142 ------~~e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~- 210 (813)
......++|||+|||.++|+++|+++|++||+|..+.+ .++++|||||+|.+.++|.+|++.|+|..+.
T Consensus 167 ~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~ 246 (562)
T TIGR01628 167 KHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGL 246 (562)
T ss_pred ccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecc
Confidence 12234578999999999999999999999999999873 5678999999999999999999999999999
Q ss_pred ---cceeeeeecCCCCCCC--------------CCcCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEe----CCCCc
Q 003524 211 ---RRKLDIHFSIPKDNPS--------------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKR 269 (813)
Q Consensus 211 ---gr~L~V~~a~pk~~~~--------------~~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri----~~~sr 269 (813)
|+.|.|.++..+.... .......+|||+||+.++++++|+++|++||.|++|++ ++.++
T Consensus 247 ~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~ 326 (562)
T TIGR01628 247 AKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSR 326 (562)
T ss_pred cccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcC
Confidence 9999999886654321 01223468999999999999999999999999999976 46778
Q ss_pred cEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcccchhh
Q 003524 270 HHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLM 314 (813)
Q Consensus 270 G~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak~~~~r~~~~ 314 (813)
|||||+|.+.++|.+|++.|||+.+.|++|.|.++..+..++..+
T Consensus 327 g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~~~~ 371 (562)
T TIGR01628 327 GFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRRAHL 371 (562)
T ss_pred CeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHHHHH
Confidence 999999999999999999999999999999999999888766443
No 7
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=4e-30 Score=297.12 Aligned_cols=235 Identities=21% Similarity=0.320 Sum_probs=194.8
Q ss_pred hcccCccccccCCCCCCchhhHHhhcCCCc---eeeeccCCCCCcccEEEEEeCChhhhcc----cCCcccCCC-CCccC
Q 003524 66 AGIMDDFDLRGLPSSLEDLEDYDIFGSGGG---MELEGEPQESLSMSMSKISISDSASGNG----LLHYSVPNG-AGTVA 137 (813)
Q Consensus 66 ~~v~del~l~~Lp~s~gEiel~~lF~~~G~---v~l~~D~~t~~s~G~afV~f~d~e~A~~----~~~~~~~n~-~~~v~ 137 (813)
....+++||++||.+++|.+++++|..+|. ++|+.| .+++++|||||+|.+.++|.. ++.+.+.++ ...+.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 345689999999999999999999999996 557888 789999999999999887763 344444322 22221
Q ss_pred CCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhcCC-EEEEE------eCCCcceEEEEEEccHHHHHHHHHHhcC--Cc
Q 003524 138 GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGD-IRTLY------TACKHRGFVMISYYDIRAARTAMRALQN--KP 208 (813)
Q Consensus 138 g~~~~~e~~srtLfVgNLP~~vTeedL~~lFs~fG~-I~~v~------~~~ksrG~AFV~F~d~e~A~~Ai~~Lng--~~ 208 (813)
.....++|||+|||.++++++|+++|+++++ +..+. ..++++|||||+|.+.++|++|++.|+. ..
T Consensus 134 -----~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~ 208 (578)
T TIGR01648 134 -----ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQ 208 (578)
T ss_pred -----ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceE
Confidence 1234789999999999999999999999964 33332 2357899999999999999999998864 45
Q ss_pred cccceeeeeecCCCCCCCCCc-CCcceeeeeccCCCCCHHHHHHHhccc--CCeEEEEeCCCCccEEEEEEcCHHHHHHH
Q 003524 209 LRRRKLDIHFSIPKDNPSDKD-LNQGTLVVFNLDPSVSNEDLRQIFGAY--GEVKEIRETPHKRHHKFIEFYDVRAAEAA 285 (813)
Q Consensus 209 l~gr~L~V~~a~pk~~~~~~~-~~~~tLfV~NLp~~vteedL~~lFs~f--G~I~~iri~~~srG~aFVeF~d~e~A~~A 285 (813)
+.|+.|.|.|+.++....... ...++|||+||+.++++++|+++|++| |+|++|++. ++||||+|++.++|++|
T Consensus 209 l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~---rgfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 209 LWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI---RDYAFVHFEDREDAVKA 285 (578)
T ss_pred ecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee---cCeEEEEeCCHHHHHHH
Confidence 789999999998876443322 234789999999999999999999999 999999764 57999999999999999
Q ss_pred HHHhCCCccCCceEEEEecCCCcc
Q 003524 286 LKSLNRSDIAGKRIKLEPSRPGGA 309 (813)
Q Consensus 286 i~~LnG~~i~Gr~I~V~~ak~~~~ 309 (813)
++.|||..|.|+.|+|+|+++...
T Consensus 286 i~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 286 MDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred HHHhCCCEECCEEEEEEEccCCCc
Confidence 999999999999999999998754
No 8
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=9e-31 Score=265.30 Aligned_cols=247 Identities=19% Similarity=0.303 Sum_probs=211.8
Q ss_pred CCcCcccccccCCCCCchHHHhhcccCccccccCCCCCCchhhHHhhcCCCceeeeccCCCCCcccEEEEEeCChhhhc-
Q 003524 44 PLEGVMNPAIGNSLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEPQESLSMSMSKISISDSASGN- 122 (813)
Q Consensus 44 s~ee~e~~~IgnllPdd~ddl~~~v~del~l~~Lp~s~gEiel~~lF~~~G~v~l~~D~~t~~s~G~afV~f~d~e~A~- 122 (813)
..++.++++|+|+||.. |++..++.||.+++|+|.|++.+ |..++.+.||+||.|.+..+|.
T Consensus 36 ~t~~skTNLIvNYLPQ~--------MTqdE~rSLF~SiGeiEScKLvR---------DKitGqSLGYGFVNYv~p~DAe~ 98 (360)
T KOG0145|consen 36 DTDESKTNLIVNYLPQN--------MTQDELRSLFGSIGEIESCKLVR---------DKITGQSLGYGFVNYVRPKDAEK 98 (360)
T ss_pred CcCcccceeeeeecccc--------cCHHHHHHHhhcccceeeeeeee---------ccccccccccceeeecChHHHHH
Confidence 35677899999999988 99999999999999999988876 7889999999999999877665
Q ss_pred ---ccCCcccCCCCCccCCCCCCCC-CCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE-----eCCCcceEEEEEEcc
Q 003524 123 ---GLLHYSVPNGAGTVAGEHPYGE-HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYD 193 (813)
Q Consensus 123 ---~~~~~~~~n~~~~v~g~~~~~e-~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d 193 (813)
.+++.++.++.+++...+|..+ .....|||.+||+.+|..||+.+|++||.|..-+ +++.+||.+||.|..
T Consensus 99 AintlNGLrLQ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDK 178 (360)
T KOG0145|consen 99 AINTLNGLRLQNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDK 178 (360)
T ss_pred HHhhhcceeeccceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecc
Confidence 6677888999999998877543 5568999999999999999999999999986544 578999999999999
Q ss_pred HHHHHHHHHHhcCCcccc--ceeeeeecCCCCCCCC-------------C------------------------------
Q 003524 194 IRAARTAMRALQNKPLRR--RKLDIHFSIPKDNPSD-------------K------------------------------ 228 (813)
Q Consensus 194 ~e~A~~Ai~~Lng~~l~g--r~L~V~~a~pk~~~~~-------------~------------------------------ 228 (813)
.++|+.||+.|||..-.| .+|.|+|+........ .
T Consensus 179 r~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~ 258 (360)
T KOG0145|consen 179 RIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPM 258 (360)
T ss_pred hhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCc
Confidence 999999999999987665 5789988743211000 0
Q ss_pred ----------------cCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEe-----CCCCccEEEEEEcCHHHHHHHHH
Q 003524 229 ----------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALK 287 (813)
Q Consensus 229 ----------------~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~~Ai~ 287 (813)
.....+|||.||.++.+|.-|.++|.+||.|..|++ +.+.|||+||.+.+.++|..||.
T Consensus 259 ~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~ 338 (360)
T KOG0145|consen 259 TIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIA 338 (360)
T ss_pred cccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHH
Confidence 000138999999999999999999999999999875 46779999999999999999999
Q ss_pred HhCCCccCCceEEEEecCCC
Q 003524 288 SLNRSDIAGKRIKLEPSRPG 307 (813)
Q Consensus 288 ~LnG~~i~Gr~I~V~~ak~~ 307 (813)
.|||..+++|.|.|.|...+
T Consensus 339 sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 339 SLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred HhcCccccceEEEEEEecCC
Confidence 99999999999999997654
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=6e-29 Score=286.77 Aligned_cols=263 Identities=18% Similarity=0.229 Sum_probs=204.1
Q ss_pred CccccccCCCCCCchhhHHhhcCCCceeeeccCCCCCcccEEEEEeCChhhhcccC------CcccCCCCCccCCCCC--
Q 003524 70 DDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEPQESLSMSMSKISISDSASGNGLL------HYSVPNGAGTVAGEHP-- 141 (813)
Q Consensus 70 del~l~~Lp~s~gEiel~~lF~~~G~v~l~~D~~t~~s~G~afV~f~d~e~A~~~~------~~~~~n~~~~v~g~~~-- 141 (813)
..++|++||.+++|.++.++|+.+|.|.-+.-. +++|||||+|.+.+.|..+. +..+.+..+.+.....
T Consensus 3 ~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~---~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~ 79 (481)
T TIGR01649 3 PVVHVRNLPQDVVEADLVEALIPFGPVSYVMML---PGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQE 79 (481)
T ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEE---CCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcc
Confidence 357999999999999999999999987622111 25689999999998776432 3344444443332211
Q ss_pred ----C-------CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEeC-CCcceEEEEEEccHHHHHHHHHHhcCCcc
Q 003524 142 ----Y-------GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA-CKHRGFVMISYYDIRAARTAMRALQNKPL 209 (813)
Q Consensus 142 ----~-------~e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~~-~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l 209 (813)
. ......+|||+||+..+|+++|+++|+.||+|.+|.+. .+.+++|||+|.+.++|.+|++.|||..|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i 159 (481)
T TIGR01649 80 IKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADI 159 (481)
T ss_pred cccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcc
Confidence 0 01122479999999999999999999999999999853 33447999999999999999999999999
Q ss_pred cc--ceeeeeecCCCCC-------CC------------C-----------------------------------------
Q 003524 210 RR--RKLDIHFSIPKDN-------PS------------D----------------------------------------- 227 (813)
Q Consensus 210 ~g--r~L~V~~a~pk~~-------~~------------~----------------------------------------- 227 (813)
.+ +.|+|.|+.+... .. .
T Consensus 160 ~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 239 (481)
T TIGR01649 160 YNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGD 239 (481)
T ss_pred cCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccc
Confidence 64 4788888764210 00 0
Q ss_pred -------------------------------CcCCcceeeeeccCC-CCCHHHHHHHhcccCCeEEEEeCCCCccEEEEE
Q 003524 228 -------------------------------KDLNQGTLVVFNLDP-SVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIE 275 (813)
Q Consensus 228 -------------------------------~~~~~~tLfV~NLp~-~vteedL~~lFs~fG~I~~iri~~~srG~aFVe 275 (813)
......+|||+||++ .+++++|+++|+.||.|.+|++...++|+|||+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~ 319 (481)
T TIGR01649 240 RMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIE 319 (481)
T ss_pred cCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEE
Confidence 001235899999998 699999999999999999999877778999999
Q ss_pred EcCHHHHHHHHHHhCCCccCCceEEEEecCCCcc-----------------------------------------cchhh
Q 003524 276 FYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA-----------------------------------------RRNLM 314 (813)
Q Consensus 276 F~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak~~~~-----------------------------------------r~~~~ 314 (813)
|.+.++|.+|++.|||..|.|++|+|.+++.... +..++
T Consensus 320 f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v 399 (481)
T TIGR01649 320 MADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHL 399 (481)
T ss_pred ECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEE
Confidence 9999999999999999999999999998854210 12345
Q ss_pred hccchhccHHHHHHHHhhcCC
Q 003524 315 LQLNQELEQDESRILQHQVGS 335 (813)
Q Consensus 315 ~ql~~~~~~~~l~~~f~~~Gs 335 (813)
.++...+++++|+.+|..+|.
T Consensus 400 ~NLp~~~tee~L~~lF~~~G~ 420 (481)
T TIGR01649 400 SNIPLSVSEEDLKELFAENGV 420 (481)
T ss_pred ecCCCCCCHHHHHHHHHhcCC
Confidence 667777889999999999884
No 10
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.1e-29 Score=257.46 Aligned_cols=212 Identities=25% Similarity=0.417 Sum_probs=178.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE-----eCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeec
Q 003524 145 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 219 (813)
Q Consensus 145 ~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 219 (813)
...+.|.|..||..+|++||+.+|...|+|++|+ +++.+.||+||.|.+++||++|+..|||..+..+.|+|.|+
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 4567899999999999999999999999999998 58899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCcc
Q 003524 220 IPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDI 294 (813)
Q Consensus 220 ~pk~~~~~~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i 294 (813)
+|.. ..+...+|||++||..+|+.||+++|++||.|+..|+ ++.+||.+||+|+.+.+|++||+.|||.+.
T Consensus 119 RPSs----~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P 194 (360)
T KOG0145|consen 119 RPSS----DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKP 194 (360)
T ss_pred cCCh----hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCC
Confidence 9864 4566789999999999999999999999999987764 778999999999999999999999999998
Q ss_pred CC--ceEEEEecCCCcccchhhhccchhccHHHHHHHHhhcCCCCCCCCCCCCccCCCCCCCCccccc------cCCCCC
Q 003524 295 AG--KRIKLEPSRPGGARRNLMLQLNQELEQDESRILQHQVGSPITNSPPGNWVQFSSPIEHNPLQTI------SKSPNF 366 (813)
Q Consensus 295 ~G--r~I~V~~ak~~~~r~~~~~ql~~~~~~~~l~~~f~~~Gsp~a~s~P~~~~~~~~p~~~~~~~~~------~~~~~~ 366 (813)
.| .+|.|+|+..+.++....... +-|++|. ++|++|++| +.|++ ++....
T Consensus 195 ~g~tepItVKFannPsq~t~~a~ls-------------~ly~sp~--------rr~~Gp~hh-~~~r~r~~~~~~~~~~~ 252 (360)
T KOG0145|consen 195 SGCTEPITVKFANNPSQKTNQALLS-------------QLYQSPA--------RRYGGPMHH-QAQRFRLDNLLNPHAAQ 252 (360)
T ss_pred CCCCCCeEEEecCCcccccchhhhH-------------HhhcCcc--------ccCCCcccc-hhhhhccccccchhhhh
Confidence 88 689999998876554321111 1233222 668999998 55664 233345
Q ss_pred CCCCCCcCCCCCCCcc
Q 003524 367 RNMSPTTSNHMPGLAS 382 (813)
Q Consensus 367 ~~~sP~~~~~~~~~~s 382 (813)
.+|||++.+++.++++
T Consensus 253 ~rfsP~~~d~m~~l~~ 268 (360)
T KOG0145|consen 253 ARFSPMTIDGMSGLAG 268 (360)
T ss_pred ccCCCccccccceeee
Confidence 6899999888877754
No 11
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=2.9e-27 Score=261.48 Aligned_cols=160 Identities=21% Similarity=0.405 Sum_probs=144.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEe-----CCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecC
Q 003524 146 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 220 (813)
Q Consensus 146 ~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 220 (813)
+.++|||+|||.++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|+|..|.|++|+|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 4689999999999999999999999999999873 57799999999999999999999999999999999999998
Q ss_pred CCCCCCCCcCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccC
Q 003524 221 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 295 (813)
Q Consensus 221 pk~~~~~~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~ 295 (813)
+... .....+|||+|||..+++++|+++|++||.|..+++ ++.++|||||+|.+.++|++|++.|||..+.
T Consensus 82 ~~~~----~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~ 157 (352)
T TIGR01661 82 PSSD----SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS 157 (352)
T ss_pred cccc----ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccC
Confidence 7543 234568999999999999999999999999988875 3456899999999999999999999999998
Q ss_pred C--ceEEEEecCCCcc
Q 003524 296 G--KRIKLEPSRPGGA 309 (813)
Q Consensus 296 G--r~I~V~~ak~~~~ 309 (813)
| .+|.|.|+..+..
T Consensus 158 g~~~~i~v~~a~~~~~ 173 (352)
T TIGR01661 158 GCTEPITVKFANNPSS 173 (352)
T ss_pred CCceeEEEEECCCCCc
Confidence 7 6789999876653
No 12
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=6.9e-27 Score=267.72 Aligned_cols=238 Identities=21% Similarity=0.280 Sum_probs=190.4
Q ss_pred cCccccccCCCCCCchhhHHhhcCCCce---eeeccCCCCCcccEEEEEeCChhhhcc---cCCcccCCCCCccCCCC--
Q 003524 69 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNG---LLHYSVPNGAGTVAGEH-- 140 (813)
Q Consensus 69 ~del~l~~Lp~s~gEiel~~lF~~~G~v---~l~~D~~t~~s~G~afV~f~d~e~A~~---~~~~~~~n~~~~v~g~~-- 140 (813)
...+||++||..+++.++.++|..+|.| .++.|..+++++|||||+|.+.+.|.. +.+..+.+..+.+....
T Consensus 89 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~ 168 (457)
T TIGR01622 89 DRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAE 168 (457)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecchh
Confidence 3568999999999999999999999974 578888899999999999999887653 33333333322221110
Q ss_pred -----------CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEe-----CCCcceEEEEEEccHHHHHHHHHHh
Q 003524 141 -----------PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRAL 204 (813)
Q Consensus 141 -----------~~~e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Ai~~L 204 (813)
.......++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|.+|+..|
T Consensus 169 ~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l 248 (457)
T TIGR01622 169 KNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVM 248 (457)
T ss_pred hhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhc
Confidence 011123689999999999999999999999999999873 3578999999999999999999999
Q ss_pred cCCccccceeeeeecCCCCCC-----------------------------------C-----------------------
Q 003524 205 QNKPLRRRKLDIHFSIPKDNP-----------------------------------S----------------------- 226 (813)
Q Consensus 205 ng~~l~gr~L~V~~a~pk~~~-----------------------------------~----------------------- 226 (813)
+|..|.|++|.|.|+...... .
T Consensus 249 ~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (457)
T TIGR01622 249 NGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRD 328 (457)
T ss_pred CCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccc
Confidence 999999999999995311000 0
Q ss_pred -------C---------------------CcCCcceeeeeccCCCCC----------HHHHHHHhcccCCeEEEEeC-CC
Q 003524 227 -------D---------------------KDLNQGTLVVFNLDPSVS----------NEDLRQIFGAYGEVKEIRET-PH 267 (813)
Q Consensus 227 -------~---------------------~~~~~~tLfV~NLp~~vt----------eedL~~lFs~fG~I~~iri~-~~ 267 (813)
. ......+|+|.||....+ .+||++.|++||.|+.|.+. +.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~ 408 (457)
T TIGR01622 329 GIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKN 408 (457)
T ss_pred ccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 0 001235788899855444 37899999999999999885 67
Q ss_pred CccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003524 268 KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 306 (813)
Q Consensus 268 srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak~ 306 (813)
..|++||+|.++++|++|++.|||+.|+|+.|.|.|...
T Consensus 409 ~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 409 SAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred CceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 789999999999999999999999999999999999754
No 13
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=1.3e-26 Score=267.42 Aligned_cols=162 Identities=25% Similarity=0.335 Sum_probs=140.2
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHHHhhcCCEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecCCCCC
Q 003524 146 PSRTLFVRNINS-NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 224 (813)
Q Consensus 146 ~srtLfVgNLP~-~vTeedL~~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~ 224 (813)
++++|||+|||. .+|+++|+++|+.||+|..|++....+|||||+|.+.++|++|+..|+|..|.|++|+|.++.....
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~ 353 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNV 353 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccc
Confidence 568999999998 6999999999999999999986555689999999999999999999999999999999998754311
Q ss_pred CCC------------C---------------------cCCcceeeeeccCCCCCHHHHHHHhcccCC--eEEEEeCCC--
Q 003524 225 PSD------------K---------------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGE--VKEIRETPH-- 267 (813)
Q Consensus 225 ~~~------------~---------------------~~~~~tLfV~NLp~~vteedL~~lFs~fG~--I~~iri~~~-- 267 (813)
... + .....+|||+|||.++++++|+++|+.||. |+.|++...
T Consensus 354 ~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~ 433 (481)
T TIGR01649 354 QPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDN 433 (481)
T ss_pred cCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCC
Confidence 000 0 012358999999999999999999999998 888877433
Q ss_pred -CccEEEEEEcCHHHHHHHHHHhCCCccCCce------EEEEecCCC
Q 003524 268 -KRHHKFIEFYDVRAAEAALKSLNRSDIAGKR------IKLEPSRPG 307 (813)
Q Consensus 268 -srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~------I~V~~ak~~ 307 (813)
++++|||+|.+.++|.+|+..|||+.|.|+. |+|.|++++
T Consensus 434 ~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 434 ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 3789999999999999999999999999985 999999874
No 14
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.95 E-value=7.3e-27 Score=257.61 Aligned_cols=163 Identities=23% Similarity=0.419 Sum_probs=146.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEe-----CCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeee
Q 003524 143 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 217 (813)
Q Consensus 143 ~e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 217 (813)
.....++|||+|||+++|+++|+++|++||+|++|++ +++++|||||+|.++++|++|++.|++..|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 4456799999999999999999999999999998873 67789999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCcCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCC
Q 003524 218 FSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRS 292 (813)
Q Consensus 218 ~a~pk~~~~~~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~~Ai~~LnG~ 292 (813)
++.+... .....+|||.|||.++|+++|+++|++||+|+.+++ +++++++|||+|.+.++|++||+.||+.
T Consensus 183 ~a~p~~~----~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 258 (346)
T TIGR01659 183 YARPGGE----SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNV 258 (346)
T ss_pred ccccccc----ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 9876432 234568999999999999999999999999999875 4566899999999999999999999999
Q ss_pred ccCC--ceEEEEecCCCcc
Q 003524 293 DIAG--KRIKLEPSRPGGA 309 (813)
Q Consensus 293 ~i~G--r~I~V~~ak~~~~ 309 (813)
.+.| ++|+|.+++....
T Consensus 259 ~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 259 IPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred ccCCCceeEEEEECCcccc
Confidence 8876 7899999987543
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=1.7e-26 Score=267.88 Aligned_cols=238 Identities=16% Similarity=0.218 Sum_probs=180.2
Q ss_pred cCccccccCCCCCCchhhHHhhcCCCc---------eeeeccCCCCCcccEEEEEeCChhhhcccC---CcccCCCCCcc
Q 003524 69 MDDFDLRGLPSSLEDLEDYDIFGSGGG---------MELEGEPQESLSMSMSKISISDSASGNGLL---HYSVPNGAGTV 136 (813)
Q Consensus 69 ~del~l~~Lp~s~gEiel~~lF~~~G~---------v~l~~D~~t~~s~G~afV~f~d~e~A~~~~---~~~~~n~~~~v 136 (813)
...|||++||..+++.++.++|..++. ...+.+....+.+|||||+|.+.+.|..+. +..+.+..+++
T Consensus 175 ~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~l~g~~~~g~~l~v 254 (509)
T TIGR01642 175 ARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMALDSIIYSNVFLKI 254 (509)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhcCCCeEeeCceeEe
Confidence 357999999999999999999986410 111122334567899999999988776332 22222222221
Q ss_pred CCCC------------------------------CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEe-----CC
Q 003524 137 AGEH------------------------------PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----AC 181 (813)
Q Consensus 137 ~g~~------------------------------~~~e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~-----~~ 181 (813)
.... .......++|||+|||..+++++|+++|+.||.|..+.+ ++
T Consensus 255 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g 334 (509)
T TIGR01642 255 RRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATG 334 (509)
T ss_pred cCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCC
Confidence 1000 001234579999999999999999999999999998763 57
Q ss_pred CcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecCCCCCCCC------------------------CcCCcceeee
Q 003524 182 KHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSD------------------------KDLNQGTLVV 237 (813)
Q Consensus 182 ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~------------------------~~~~~~tLfV 237 (813)
+++|||||+|.+.++|+.|+..|+|..|.|++|.|.++........ ......+|+|
T Consensus 335 ~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l 414 (509)
T TIGR01642 335 LSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQL 414 (509)
T ss_pred CcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCCCceEEEe
Confidence 7999999999999999999999999999999999999854321110 0113457899
Q ss_pred eccCCC--C--------CHHHHHHHhcccCCeEEEEeCC--------CCccEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 003524 238 FNLDPS--V--------SNEDLRQIFGAYGEVKEIRETP--------HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 299 (813)
Q Consensus 238 ~NLp~~--v--------teedL~~lFs~fG~I~~iri~~--------~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I 299 (813)
.|+... + ..++|+++|++||.|+.|++.. ...|++||+|.+.++|++|+.+|||..|.|+.|
T Consensus 415 ~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v 494 (509)
T TIGR01642 415 TNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVV 494 (509)
T ss_pred ccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 998532 1 2368999999999999998742 236899999999999999999999999999999
Q ss_pred EEEecCC
Q 003524 300 KLEPSRP 306 (813)
Q Consensus 300 ~V~~ak~ 306 (813)
.|.|...
T Consensus 495 ~~~~~~~ 501 (509)
T TIGR01642 495 VAAFYGE 501 (509)
T ss_pred EEEEeCH
Confidence 9999754
No 16
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.5e-26 Score=236.46 Aligned_cols=163 Identities=20% Similarity=0.422 Sum_probs=147.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE-----eCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecCC
Q 003524 147 SRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 221 (813)
Q Consensus 147 srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 221 (813)
.-.+||+.|.+.++-++|++.|.+||+|.+++ .++|+|||+||.|.+.++|+.||..|+|..|.+|.|+-.|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 45799999999999999999999999999887 3889999999999999999999999999999999999999976
Q ss_pred CCCCCC------------CcCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEeCCCCccEEEEEEcCHHHHHHHHHHh
Q 003524 222 KDNPSD------------KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSL 289 (813)
Q Consensus 222 k~~~~~------------~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri~~~srG~aFVeF~d~e~A~~Ai~~L 289 (813)
|..... ....+++|||+|++.-+++++|++.|++||.|.+||+.+ .+||+||+|++.|+|.+||..+
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk-~qGYaFVrF~tkEaAahAIv~m 220 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFK-DQGYAFVRFETKEAAAHAIVQM 220 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEec-ccceEEEEecchhhHHHHHHHh
Confidence 642211 123457999999999999999999999999999999975 4699999999999999999999
Q ss_pred CCCccCCceEEEEecCCCccc
Q 003524 290 NRSDIAGKRIKLEPSRPGGAR 310 (813)
Q Consensus 290 nG~~i~Gr~I~V~~ak~~~~r 310 (813)
|+++|.|..+++.|.+....-
T Consensus 221 Nntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 221 NNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred cCceeCceEEEEeccccCCCC
Confidence 999999999999999876643
No 17
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=4.1e-25 Score=237.76 Aligned_cols=240 Identities=19% Similarity=0.330 Sum_probs=195.6
Q ss_pred CccccccCCCCCCchhhHHhhcCCCc---eeeeccCCCCCcccEEEEEeCChhhhccc-----CCcccCCC--CCccCCC
Q 003524 70 DDFDLRGLPSSLEDLEDYDIFGSGGG---MELEGEPQESLSMSMSKISISDSASGNGL-----LHYSVPNG--AGTVAGE 139 (813)
Q Consensus 70 del~l~~Lp~s~gEiel~~lF~~~G~---v~l~~D~~t~~s~G~afV~f~d~e~A~~~-----~~~~~~n~--~~~v~g~ 139 (813)
-.+||+.+|+.+.|.++..+|+.+|. |.|.+|+.++.++|||||+|...++|.+. +...+++. .+.+...
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~A 114 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYA 114 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeeccc
Confidence 46899999999999999999999996 45889999999999999999987766522 12223322 3344333
Q ss_pred CCCCC--CCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEe----CCCcceEEEEEEccHHHHHHHHHHhcCC-cccc-
Q 003524 140 HPYGE--HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNK-PLRR- 211 (813)
Q Consensus 140 ~~~~e--~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Ai~~Lng~-~l~g- 211 (813)
....+ ...++|||+-|++.+||.|++++|++||.|++|++ .+.+||||||.|.+.|.|..||++|||. .++|
T Consensus 115 d~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGc 194 (510)
T KOG0144|consen 115 DGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGC 194 (510)
T ss_pred chhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccC
Confidence 33333 34789999999999999999999999999999983 6789999999999999999999999995 3554
Q ss_pred -ceeeeeecCCCCCCCCCcC------------------------------------------------------------
Q 003524 212 -RKLDIHFSIPKDNPSDKDL------------------------------------------------------------ 230 (813)
Q Consensus 212 -r~L~V~~a~pk~~~~~~~~------------------------------------------------------------ 230 (813)
.+|.|+|+.++..+..+..
T Consensus 195 s~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~ 274 (510)
T KOG0144|consen 195 SQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQL 274 (510)
T ss_pred CCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHH
Confidence 5888998766532110000
Q ss_pred --------------------------------------------------------------------------------
Q 003524 231 -------------------------------------------------------------------------------- 230 (813)
Q Consensus 231 -------------------------------------------------------------------------------- 230 (813)
T Consensus 275 qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a 354 (510)
T KOG0144|consen 275 QQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGA 354 (510)
T ss_pred HHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccc
Confidence
Q ss_pred --------------------------------------------------------------------CcceeeeeccCC
Q 003524 231 --------------------------------------------------------------------NQGTLVVFNLDP 242 (813)
Q Consensus 231 --------------------------------------------------------------------~~~tLfV~NLp~ 242 (813)
...+|||.+||.
T Consensus 355 ~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPq 434 (510)
T KOG0144|consen 355 GTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQ 434 (510)
T ss_pred cccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCch
Confidence 003799999999
Q ss_pred CCCHHHHHHHhcccCCeEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcc
Q 003524 243 SVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 309 (813)
Q Consensus 243 ~vteedL~~lFs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak~~~~ 309 (813)
+.-+.+|-..|..||.|++.++ ++-++.|+||.|++..+|.+||..|||..|++++++|...+.+..
T Consensus 435 efgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 435 EFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred hhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 9999999999999999988753 677899999999999999999999999999999999999876653
No 18
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.92 E-value=1.7e-24 Score=250.84 Aligned_cols=163 Identities=20% Similarity=0.402 Sum_probs=143.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEe-----CCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecC
Q 003524 146 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 220 (813)
Q Consensus 146 ~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 220 (813)
..++|||+|||+++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|+|..|.|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 4689999999999999999999999999999973 67899999999999999999999999999999999998654
Q ss_pred CCCCCC-------CCcCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEe-----CCCCccEEEEEEcCHHHHHHHHHH
Q 003524 221 PKDNPS-------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKS 288 (813)
Q Consensus 221 pk~~~~-------~~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~~Ai~~ 288 (813)
...... .......+|||+||+.++++++|+++|+.||.|+++++ ++.++|||||+|.+.++|.+||+.
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 221110 11123468999999999999999999999999999986 345799999999999999999999
Q ss_pred hCCCccCCceEEEEecCCCc
Q 003524 289 LNRSDIAGKRIKLEPSRPGG 308 (813)
Q Consensus 289 LnG~~i~Gr~I~V~~ak~~~ 308 (813)
||+..++|+.|+|.++.++.
T Consensus 266 mNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred hCCCeeCCeEEEEEecCCCc
Confidence 99999999999999987643
No 19
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.3e-23 Score=226.32 Aligned_cols=164 Identities=23% Similarity=0.433 Sum_probs=144.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE-----eCCCcceEEEEEEccHHHHHHHHHHhcCCc-ccc--ceeee
Q 003524 145 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKP-LRR--RKLDI 216 (813)
Q Consensus 145 ~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~-l~g--r~L~V 216 (813)
.+.-+|||+-||..++|+||+++|++||.|.+|. .++.++|||||.|++.++|.+|+.+|++.. |-| .+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 4567999999999999999999999999999986 578899999999999999999999998854 444 68888
Q ss_pred eecCCCCCCCCCcCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEe----CCCCccEEEEEEcCHHHHHHHHHHhCCC
Q 003524 217 HFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRS 292 (813)
Q Consensus 217 ~~a~pk~~~~~~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri----~~~srG~aFVeF~d~e~A~~Ai~~LnG~ 292 (813)
+|+....+. -..+.+|||+-|++.+||.|++++|++||.|++|++ .+.+||||||+|.+.+-|..||++|||.
T Consensus 112 k~Ad~E~er---~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 112 KYADGERER---IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred cccchhhhc---cccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccc
Confidence 888754332 245679999999999999999999999999999976 5578999999999999999999999996
Q ss_pred -ccCC--ceEEEEecCCCcccc
Q 003524 293 -DIAG--KRIKLEPSRPGGARR 311 (813)
Q Consensus 293 -~i~G--r~I~V~~ak~~~~r~ 311 (813)
.+.| .+|.|+||.++..|.
T Consensus 189 ~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 189 QTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred eeeccCCCceEEEecccCCCch
Confidence 7777 589999999887653
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=7.3e-24 Score=233.23 Aligned_cols=242 Identities=19% Similarity=0.294 Sum_probs=190.3
Q ss_pred CccccccCCCCCCchhhHHhhcCCCce---eeeccCCCCCcccEEEEEeCChhhhc----ccCCcccCCCCCccC-----
Q 003524 70 DDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVA----- 137 (813)
Q Consensus 70 del~l~~Lp~s~gEiel~~lF~~~G~v---~l~~D~~t~~s~G~afV~f~d~e~A~----~~~~~~~~n~~~~v~----- 137 (813)
..+||++||.+.....+-++|+..|++ .++.+..++..+||+||+|+-.+.++ .....++.+..+.+.
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 458999999999999999999999975 47888888899999999998655443 111111111100000
Q ss_pred --------C-----CCCC---------CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEe----CCCcceEEEEEE
Q 003524 138 --------G-----EHPY---------GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISY 191 (813)
Q Consensus 138 --------g-----~~~~---------~e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~----~~ksrG~AFV~F 191 (813)
+ +.+. ...+.-+|+|+|||+.+.+.+|+.+|+.||.|..|.+ .++-.|||||.|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 0 0010 1123568999999999999999999999999999984 456679999999
Q ss_pred ccHHHHHHHHHHhcCCccccceeeeeecCCCCCCCC-----------------------------------------C--
Q 003524 192 YDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSD-----------------------------------------K-- 228 (813)
Q Consensus 192 ~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~-----------------------------------------~-- 228 (813)
....+|.+|++.+|+..|.||+|-|.||.+++.-.. +
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~ 245 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEET 245 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccc
Confidence 999999999999999999999999999865431000 0
Q ss_pred cC-------------------------------------------CcceeeeeccCCCCCHHHHHHHhcccCCeEEEEe-
Q 003524 229 DL-------------------------------------------NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE- 264 (813)
Q Consensus 229 ~~-------------------------------------------~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri- 264 (813)
+. ...+|||+|||+++|+++|.+.|++||.|.++.+
T Consensus 246 D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV 325 (678)
T KOG0127|consen 246 DGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIV 325 (678)
T ss_pred cccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEE
Confidence 00 0048999999999999999999999999999864
Q ss_pred ----CCCCccEEEEEEcCHHHHHHHHHHh-----CC-CccCCceEEEEecCCCcccc
Q 003524 265 ----TPHKRHHKFIEFYDVRAAEAALKSL-----NR-SDIAGKRIKLEPSRPGGARR 311 (813)
Q Consensus 265 ----~~~srG~aFVeF~d~e~A~~Ai~~L-----nG-~~i~Gr~I~V~~ak~~~~r~ 311 (813)
+++++|.|||.|.+..+|.+||.+. .| ..+.||.|+|..+-++....
T Consensus 326 ~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~ 382 (678)
T KOG0127|consen 326 KDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEAA 382 (678)
T ss_pred eccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHHH
Confidence 7889999999999999999999977 24 67899999999998776543
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.91 E-value=9e-23 Score=236.60 Aligned_cols=153 Identities=12% Similarity=0.228 Sum_probs=127.4
Q ss_pred ccCccccccCCCCCCchhhHHhhcCCCce---eeeccCCCCCcccEEEEEeCChhhhc----ccCCcccCCCCCccCCCC
Q 003524 68 IMDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEH 140 (813)
Q Consensus 68 v~del~l~~Lp~s~gEiel~~lF~~~G~v---~l~~D~~t~~s~G~afV~f~d~e~A~----~~~~~~~~n~~~~v~g~~ 140 (813)
.+..+||++|+.+++|.++.++|..+|.| +++.|..+++++|||||+|.+.+.|. .+++..+.+..+++....
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 46789999999999999999999999985 47788899999999999999988776 344445555544443211
Q ss_pred C------------CCCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEe-----CCCcceEEEEEEccHHHHHHHHHH
Q 003524 141 P------------YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRA 203 (813)
Q Consensus 141 ~------------~~e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Ai~~ 203 (813)
. ......++|||+|||+++++++|+++|+.||+|..|++ +++++|||||+|.+.++|.+|++.
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 0 11124579999999999999999999999999999873 567999999999999999999999
Q ss_pred hcCCccccceeeeeecC
Q 003524 204 LQNKPLRRRKLDIHFSI 220 (813)
Q Consensus 204 Lng~~l~gr~L~V~~a~ 220 (813)
||+..|.|+.|+|.++.
T Consensus 266 mNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCV 282 (612)
T ss_pred hCCCeeCCeEEEEEecC
Confidence 99999999999997754
No 22
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=6.2e-23 Score=227.79 Aligned_cols=252 Identities=15% Similarity=0.315 Sum_probs=203.9
Q ss_pred cccccCCCCCCchhhHHhhcCCCc---eeeeccCCCCCcccEEEEEeCChhhhc----ccCCcccCCCCCccCCCCCCCC
Q 003524 72 FDLRGLPSSLEDLEDYDIFGSGGG---MELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHPYGE 144 (813)
Q Consensus 72 l~l~~Lp~s~gEiel~~lF~~~G~---v~l~~D~~t~~s~G~afV~f~d~e~A~----~~~~~~~~n~~~~v~g~~~~~e 144 (813)
+||+ .+++|..++++|+.+|. ++||.|. + +.|||||.|.+.+.|. .++...+.++.+++.+...
T Consensus 4 l~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r--- 74 (369)
T KOG0123|consen 4 LYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR--- 74 (369)
T ss_pred eecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc---
Confidence 5666 78899999999999997 5699998 6 9999999999877665 3444445566666666543
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEe---CCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecCC
Q 003524 145 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 221 (813)
Q Consensus 145 ~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~---~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 221 (813)
+...|||.||+++++..+|.++|+.||+|.+|++ ..-++|| ||+|.++++|++|++.+||..+.+++|.|.....
T Consensus 75 -d~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 75 -DPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred -CCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 2233999999999999999999999999999983 2338999 9999999999999999999999999999988776
Q ss_pred CCCCCCCc----CCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEe----CCCCccEEEEEEcCHHHHHHHHHHhCCCc
Q 003524 222 KDNPSDKD----LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSD 293 (813)
Q Consensus 222 k~~~~~~~----~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri----~~~srG~aFVeF~d~e~A~~Ai~~LnG~~ 293 (813)
+....... .....++|.|++.+++++.|.++|..||.|..+.+ .+++++|+||.|.+.++|..|++.|++..
T Consensus 153 ~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~ 232 (369)
T KOG0123|consen 153 KEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKI 232 (369)
T ss_pred hhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCc
Confidence 55433222 23468999999999999999999999999999875 45578999999999999999999999999
Q ss_pred cCCceEEEEecCCCcccch----------------------hhhccchhccHHHHHHHHhhcC
Q 003524 294 IAGKRIKLEPSRPGGARRN----------------------LMLQLNQELEQDESRILQHQVG 334 (813)
Q Consensus 294 i~Gr~I~V~~ak~~~~r~~----------------------~~~ql~~~~~~~~l~~~f~~~G 334 (813)
+.++.+.|..+..+.++.. +++++...++.+.++..|..+|
T Consensus 233 ~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~G 295 (369)
T KOG0123|consen 233 FGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFG 295 (369)
T ss_pred CCccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhccc
Confidence 9999999998877554422 3333444556666666666666
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.90 E-value=5.9e-23 Score=235.32 Aligned_cols=163 Identities=25% Similarity=0.450 Sum_probs=143.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEe-----CCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeee
Q 003524 143 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 217 (813)
Q Consensus 143 ~e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 217 (813)
.+.+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|+. |+|..+.|++|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 3456789999999999999999999999999999883 57789999999999999999997 89999999999999
Q ss_pred ecCCCCCCCC--------CcCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEeC-----CCCccEEEEEEcCHHHHHH
Q 003524 218 FSIPKDNPSD--------KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEA 284 (813)
Q Consensus 218 ~a~pk~~~~~--------~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri~-----~~srG~aFVeF~d~e~A~~ 284 (813)
++........ ......+|||+|||..+++++|+++|++||.|..|++. +.++|||||+|.+.++|.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 8654322111 11235789999999999999999999999999999763 4678999999999999999
Q ss_pred HHHHhCCCccCCceEEEEecCC
Q 003524 285 ALKSLNRSDIAGKRIKLEPSRP 306 (813)
Q Consensus 285 Ai~~LnG~~i~Gr~I~V~~ak~ 306 (813)
|++.|||..|.|++|+|.|+..
T Consensus 244 A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 244 ALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHhcCCcEECCEEEEEEEccC
Confidence 9999999999999999999873
No 24
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.89 E-value=2.3e-22 Score=232.90 Aligned_cols=180 Identities=22% Similarity=0.329 Sum_probs=155.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEe----CCCcceEEEEEEccHHHHHHHHHHhcCCccc-cceeeeeecC
Q 003524 146 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRKLDIHFSI 220 (813)
Q Consensus 146 ~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~-gr~L~V~~a~ 220 (813)
..++|||+|||.+++|++|+++|++||.|.+|++ +++++|||||+|.+.++|++||+.|++..|. ++.|.|..+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 4589999999999999999999999999999873 5789999999999999999999999999886 7777776553
Q ss_pred CCCCCCCCcCCcceeeeeccCCCCCHHHHHHHhcccCC-eEEEEe------CCCCccEEEEEEcCHHHHHHHHHHhCC--
Q 003524 221 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGE-VKEIRE------TPHKRHHKFIEFYDVRAAEAALKSLNR-- 291 (813)
Q Consensus 221 pk~~~~~~~~~~~tLfV~NLp~~vteedL~~lFs~fG~-I~~iri------~~~srG~aFVeF~d~e~A~~Ai~~LnG-- 291 (813)
..++|||+|||.++++++|++.|++++. |+++.+ ..+++|||||+|.+.++|++|++.|+.
T Consensus 137 ----------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gk 206 (578)
T TIGR01648 137 ----------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGR 206 (578)
T ss_pred ----------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccc
Confidence 3568999999999999999999999863 333322 235689999999999999999998864
Q ss_pred CccCCceEEEEecCCCcc---------cchhhhccchhccHHHHHHHHhhc--CC
Q 003524 292 SDIAGKRIKLEPSRPGGA---------RRNLMLQLNQELEQDESRILQHQV--GS 335 (813)
Q Consensus 292 ~~i~Gr~I~V~~ak~~~~---------r~~~~~ql~~~~~~~~l~~~f~~~--Gs 335 (813)
..+.|+.|.|+|+.+... +..++.++...+++++|+.+|.+| |.
T Consensus 207 i~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~ 261 (578)
T TIGR01648 207 IQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGK 261 (578)
T ss_pred eEecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCc
Confidence 367899999999987542 346888999999999999999999 63
No 25
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=4.3e-22 Score=215.56 Aligned_cols=182 Identities=22% Similarity=0.340 Sum_probs=160.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE-----eCCCcceEEEEEEccHHHHHHHHHHhcCCccc-cceeeeee
Q 003524 145 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRKLDIHF 218 (813)
Q Consensus 145 ~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~-gr~L~V~~ 218 (813)
.-.+.|||+.||.++.|+||.-+|++.|+|-+++ .++.+||||||.|.+.++|++|++.||+.+|+ |+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 3468999999999999999999999999999988 37889999999999999999999999999996 89999987
Q ss_pred cCCCCCCCCCcCCcceeeeeccCCCCCHHHHHHHhcccCC-eEEEEe------CCCCccEEEEEEcCHHHHHHHHHHhCC
Q 003524 219 SIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGE-VKEIRE------TPHKRHHKFIEFYDVRAAEAALKSLNR 291 (813)
Q Consensus 219 a~pk~~~~~~~~~~~tLfV~NLp~~vteedL~~lFs~fG~-I~~iri------~~~srG~aFVeF~d~e~A~~Ai~~LnG 291 (813)
+. .++.|||+|||...++++|.+.+++.++ |++|.+ ..++||||||+|+++..|..|.+.|-.
T Consensus 161 Sv----------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~ 230 (506)
T KOG0117|consen 161 SV----------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMP 230 (506)
T ss_pred ee----------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccC
Confidence 65 4568999999999999999999999874 555543 346799999999999999999987753
Q ss_pred --CccCCceEEEEecCCCcc---------cchhhhccchhccHHHHHHHHhhcCCC
Q 003524 292 --SDIAGKRIKLEPSRPGGA---------RRNLMLQLNQELEQDESRILQHQVGSP 336 (813)
Q Consensus 292 --~~i~Gr~I~V~~ak~~~~---------r~~~~~ql~~~~~~~~l~~~f~~~Gsp 336 (813)
.++-|..+.|+||.|... +..|++++...++++.|...|.++|.-
T Consensus 231 g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~v 286 (506)
T KOG0117|consen 231 GKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKV 286 (506)
T ss_pred CceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccce
Confidence 367799999999998754 346899999999999999999999843
No 26
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.88 E-value=1.2e-21 Score=227.31 Aligned_cols=163 Identities=16% Similarity=0.284 Sum_probs=135.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhc------------CCEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcCCccc
Q 003524 143 GEHPSRTLFVRNINSNVEDSELRALFEQY------------GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR 210 (813)
Q Consensus 143 ~e~~srtLfVgNLP~~vTeedL~~lFs~f------------G~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~ 210 (813)
.....++|||+|||+++|+++|+++|.++ +.|..+. ..+.+|||||+|.+.++|.+||. |+|..+.
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~-~~~~kg~afVeF~~~e~A~~Al~-l~g~~~~ 248 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN-INKEKNFAFLEFRTVEEATFAMA-LDSIIYS 248 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE-ECCCCCEEEEEeCCHHHHhhhhc-CCCeEee
Confidence 44567999999999999999999999975 2344443 46789999999999999999995 9999999
Q ss_pred cceeeeeecCCCCCC-------------------------CCCcCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEe-
Q 003524 211 RRKLDIHFSIPKDNP-------------------------SDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE- 264 (813)
Q Consensus 211 gr~L~V~~a~pk~~~-------------------------~~~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri- 264 (813)
|+.|+|......... ........+|||+|||..+++++|+++|+.||.|..+.+
T Consensus 249 g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~ 328 (509)
T TIGR01642 249 NVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLI 328 (509)
T ss_pred CceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEE
Confidence 999999743211100 000112368999999999999999999999999998865
Q ss_pred ----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003524 265 ----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 307 (813)
Q Consensus 265 ----~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak~~ 307 (813)
++.++|||||+|.+.++|..|++.|||..|.|++|.|.++...
T Consensus 329 ~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 329 KDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred ecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 4667999999999999999999999999999999999998654
No 27
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.85 E-value=3.4e-21 Score=187.84 Aligned_cols=163 Identities=25% Similarity=0.346 Sum_probs=144.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE-----eCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeec
Q 003524 145 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 219 (813)
Q Consensus 145 ~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 219 (813)
....||||+||+..++++.|.++|-+.|+|..++ ++..++|||||+|.++|+|+-|++.|+...|.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 3467999999999999999999999999999997 46779999999999999999999999999999999999987
Q ss_pred CCCCCCCCCcCCcceeeeeccCCCCCHHHHHHHhcccCCeEEE----E--eCCCCccEEEEEEcCHHHHHHHHHHhCCCc
Q 003524 220 IPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI----R--ETPHKRHHKFIEFYDVRAAEAALKSLNRSD 293 (813)
Q Consensus 220 ~pk~~~~~~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~i----r--i~~~srG~aFVeF~d~e~A~~Ai~~LnG~~ 293 (813)
.. .........+|||+||++++++..|.++|+.||.+... + .+++++++|||.|.+.+.+.+|+..|||..
T Consensus 87 s~---~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~ 163 (203)
T KOG0131|consen 87 SA---HQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQY 163 (203)
T ss_pred cc---ccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccch
Confidence 61 11222234789999999999999999999999988663 2 367889999999999999999999999999
Q ss_pred cCCceEEEEecCCCccc
Q 003524 294 IAGKRIKLEPSRPGGAR 310 (813)
Q Consensus 294 i~Gr~I~V~~ak~~~~r 310 (813)
+..++|+|+++..++.+
T Consensus 164 l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 164 LCNRPITVSYAFKKDTK 180 (203)
T ss_pred hcCCceEEEEEEecCCC
Confidence 99999999999877654
No 28
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=2.1e-20 Score=207.75 Aligned_cols=237 Identities=23% Similarity=0.379 Sum_probs=191.9
Q ss_pred cccccCCCCCCchhhHHhhcCCCc---eeeeccCCCCCcccEEEEEeCChhhhccc----CCcccCCCCCccCCCC----
Q 003524 72 FDLRGLPSSLEDLEDYDIFGSGGG---MELEGEPQESLSMSMSKISISDSASGNGL----LHYSVPNGAGTVAGEH---- 140 (813)
Q Consensus 72 l~l~~Lp~s~gEiel~~lF~~~G~---v~l~~D~~t~~s~G~afV~f~d~e~A~~~----~~~~~~n~~~~v~g~~---- 140 (813)
+||.+|+.+++...++++|+.+|. +.|+.|... ++|| ||.|.+.+.|..+ ++..+.+..+-+.-..
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g--~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG--SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC--ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 899999999999999999999997 457666533 9999 9999999887632 2222222222111110
Q ss_pred ---CCC--CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE----eCCCcceEEEEEEccHHHHHHHHHHhcCCcccc
Q 003524 141 ---PYG--EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRR 211 (813)
Q Consensus 141 ---~~~--e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~g 211 (813)
+.. ...-..++|.+++.++++++|..+|..||.|..+. ..+++++|+||.|.+.++|..|++.|++....+
T Consensus 156 r~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~ 235 (369)
T KOG0123|consen 156 REAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGD 235 (369)
T ss_pred hcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCc
Confidence 111 12346799999999999999999999999999987 357789999999999999999999999999999
Q ss_pred ceeeeeecCCCCCCC--------------CCcCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEe----CCCCccEEE
Q 003524 212 RKLDIHFSIPKDNPS--------------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKF 273 (813)
Q Consensus 212 r~L~V~~a~pk~~~~--------------~~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri----~~~srG~aF 273 (813)
..+.|..+..+.... .......+|||.|++..++.+.|+++|+.||+|..+++ .+.++|++|
T Consensus 236 ~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gf 315 (369)
T KOG0123|consen 236 KELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGF 315 (369)
T ss_pred cceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccceEE
Confidence 999998776532111 11234468999999999999999999999999999876 467899999
Q ss_pred EEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcccc
Q 003524 274 IEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARR 311 (813)
Q Consensus 274 VeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak~~~~r~ 311 (813)
|+|...++|.+|+..+|+..+.++.|.|.++.....++
T Consensus 316 V~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~ 353 (369)
T KOG0123|consen 316 VEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRR 353 (369)
T ss_pred EEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccch
Confidence 99999999999999999999999999999988655544
No 29
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.84 E-value=7.7e-21 Score=196.52 Aligned_cols=148 Identities=28% Similarity=0.462 Sum_probs=137.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecCCCCCCCC
Q 003524 148 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSD 227 (813)
Q Consensus 148 rtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~ 227 (813)
-+|||+|||..+++.+|+.+|++||+|.+|.+ -|.||||..++...|+.||+.|++..|.|..|.|+-++.+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDI---vKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs---- 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDI---VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS---- 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeee---ecccceEEeecccccHHHHhhcccceecceEEEEEeccccC----
Confidence 47999999999999999999999999999986 35799999999999999999999999999999999887653
Q ss_pred CcCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003524 228 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 307 (813)
Q Consensus 228 ~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak~~ 307 (813)
....+|+|+||.+.++.+||+..|++||.|+++++. ++|+||.|+-.++|..|++.||++++.|++++|..+..+
T Consensus 76 --k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv---kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 --KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV---KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred --CCccccccCCCCccccCHHHhhhhcccCCceeeeee---cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 345789999999999999999999999999999986 689999999999999999999999999999999988654
No 30
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=9.5e-20 Score=201.03 Aligned_cols=162 Identities=22% Similarity=0.367 Sum_probs=143.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEe-----CCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecCCC
Q 003524 148 RTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 222 (813)
Q Consensus 148 rtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 222 (813)
.||||++||++++.++|.++|+.+|+|..|.+ ...+|||+||+|.-.+++++|+..+.+..+.|+.|.|.++.++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999872 4568999999999999999999999999999999999998765
Q ss_pred CCCCC--------------------C--cCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEeC----CCCccEEEEEE
Q 003524 223 DNPSD--------------------K--DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEF 276 (813)
Q Consensus 223 ~~~~~--------------------~--~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri~----~~srG~aFVeF 276 (813)
..... . +.....|.|+|||+.+...+|+.+|+.||.|.+|.|. ++-.|||||.|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 43220 0 1114589999999999999999999999999999874 33468999999
Q ss_pred cCHHHHHHHHHHhCCCccCCceEEEEecCCCcc
Q 003524 277 YDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 309 (813)
Q Consensus 277 ~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak~~~~ 309 (813)
.+..+|.+|++.+||.+|.||+|-|.||-+++.
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 999999999999999999999999999988763
No 31
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.81 E-value=1.9e-19 Score=198.97 Aligned_cols=154 Identities=20% Similarity=0.310 Sum_probs=130.3
Q ss_pred cCccccccCCCCCCchhhHHhhcCCCce---eeeccCCCCCcccEEEEEeCChhhhc----ccCCcccCCCCCccCCCCC
Q 003524 69 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHP 141 (813)
Q Consensus 69 ~del~l~~Lp~s~gEiel~~lF~~~G~v---~l~~D~~t~~s~G~afV~f~d~e~A~----~~~~~~~~n~~~~v~g~~~ 141 (813)
-+.|||++||.+++|.++.++|+.+|.| +|+.|..+++++|||||+|.+.++|. .+....+.+..+++....+
T Consensus 107 ~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p 186 (346)
T TIGR01659 107 GTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARP 186 (346)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccc
Confidence 4789999999999999999999999975 57888899999999999999988765 3455566666666654443
Q ss_pred C-CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEe-----CCCcceEEEEEEccHHHHHHHHHHhcCCcccc--ce
Q 003524 142 Y-GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR--RK 213 (813)
Q Consensus 142 ~-~e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~g--r~ 213 (813)
. .....++|||+|||.++|+++|+++|++||+|+.|++ +++++|||||+|.+.++|++||+.|++..+.+ ++
T Consensus 187 ~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~ 266 (346)
T TIGR01659 187 GGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQP 266 (346)
T ss_pred cccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCcee
Confidence 2 2234678999999999999999999999999998873 67788999999999999999999999998866 68
Q ss_pred eeeeecCCC
Q 003524 214 LDIHFSIPK 222 (813)
Q Consensus 214 L~V~~a~pk 222 (813)
|.|.++...
T Consensus 267 l~V~~a~~~ 275 (346)
T TIGR01659 267 LTVRLAEEH 275 (346)
T ss_pred EEEEECCcc
Confidence 889988654
No 32
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.81 E-value=3.1e-19 Score=202.98 Aligned_cols=161 Identities=25% Similarity=0.459 Sum_probs=140.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCEEEEEeCC--------CcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecC
Q 003524 149 TLFVRNINSNVEDSELRALFEQYGDIRTLYTAC--------KHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 220 (813)
Q Consensus 149 tLfVgNLP~~vTeedL~~lFs~fG~I~~v~~~~--------ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 220 (813)
+|||.||++++|.++|..+|...|.|.++.+.. .+.|||||+|.+.++|+.|++.|+|+.|.|+.|.|+++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 499999999999999999999999999996421 245999999999999999999999999999999999987
Q ss_pred CCCCC-----CCCcCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEeCCC-----CccEEEEEEcCHHHHHHHHHHhC
Q 003524 221 PKDNP-----SDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH-----KRHHKFIEFYDVRAAEAALKSLN 290 (813)
Q Consensus 221 pk~~~-----~~~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri~~~-----srG~aFVeF~d~e~A~~Ai~~Ln 290 (813)
.+... .......+.|.|+|||...+..+++++|..||.|++|++..+ .+|||||+|-+.++|.+|+++|.
T Consensus 597 ~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~ 676 (725)
T KOG0110|consen 597 NKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALG 676 (725)
T ss_pred CccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhc
Confidence 21110 111112358999999999999999999999999999998544 48899999999999999999999
Q ss_pred CCccCCceEEEEecCCCcc
Q 003524 291 RSDIAGKRIKLEPSRPGGA 309 (813)
Q Consensus 291 G~~i~Gr~I~V~~ak~~~~ 309 (813)
.+.+.||+|.++|++....
T Consensus 677 STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 677 STHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred ccceechhhheehhccchH
Confidence 9999999999999987653
No 33
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.79 E-value=4.1e-19 Score=197.47 Aligned_cols=235 Identities=20% Similarity=0.244 Sum_probs=177.9
Q ss_pred ccccccCCCCCCchhhHHhhcCCCc---eeeeccCCCCCcccEEEEEeCChhhhc---ccCCcccCCCCCccCCCC----
Q 003524 71 DFDLRGLPSSLEDLEDYDIFGSGGG---MELEGEPQESLSMSMSKISISDSASGN---GLLHYSVPNGAGTVAGEH---- 140 (813)
Q Consensus 71 el~l~~Lp~s~gEiel~~lF~~~G~---v~l~~D~~t~~s~G~afV~f~d~e~A~---~~~~~~~~n~~~~v~g~~---- 140 (813)
.+++-.+.....+-+++++|+..|. |+++.|..+.+++|.+||+|.|..... .+.+..+.+.++.+....
T Consensus 181 tvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEaekn 260 (549)
T KOG0147|consen 181 TVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAEKN 260 (549)
T ss_pred HHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHHHHH
Confidence 3456666666778889999999996 568899999999999999999876432 333333333322221100
Q ss_pred -----------CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE-----eCCCcceEEEEEEccHHHHHHHHHHh
Q 003524 141 -----------PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRAL 204 (813)
Q Consensus 141 -----------~~~e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Ai~~L 204 (813)
..-..|-+.|||+||-.++++++|+.+|+.||.|+.|. .++.++||+||+|.+.++|++|+..|
T Consensus 261 r~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~l 340 (549)
T KOG0147|consen 261 RAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQL 340 (549)
T ss_pred HHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHh
Confidence 01123445599999999999999999999999999987 27899999999999999999999999
Q ss_pred cCCccccceeeeeecCCCCCCCCC--------------------------------------------------------
Q 003524 205 QNKPLRRRKLDIHFSIPKDNPSDK-------------------------------------------------------- 228 (813)
Q Consensus 205 ng~~l~gr~L~V~~a~pk~~~~~~-------------------------------------------------------- 228 (813)
||..|.|+.|+|.....+-.....
T Consensus 341 ngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~ 420 (549)
T KOG0147|consen 341 NGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQ 420 (549)
T ss_pred ccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHh
Confidence 999999999998753211100000
Q ss_pred ------------c-------CCcceeeeeccCC--CCC--------HHHHHHHhcccCCeEEEEeCCCCccEEEEEEcCH
Q 003524 229 ------------D-------LNQGTLVVFNLDP--SVS--------NEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDV 279 (813)
Q Consensus 229 ------------~-------~~~~tLfV~NLp~--~vt--------eedL~~lFs~fG~I~~iri~~~srG~aFVeF~d~ 279 (813)
. +...++.++|+-. ..| .+|+.+.+.+||.|..|.+...+-|+.||.|.+.
T Consensus 421 ~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~ 500 (549)
T KOG0147|consen 421 FNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSA 500 (549)
T ss_pred hcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcH
Confidence 0 0112344555421 112 3778888999999999999988889999999999
Q ss_pred HHHHHHHHHhCCCccCCceEEEEecC
Q 003524 280 RAAEAALKSLNRSDIAGKRIKLEPSR 305 (813)
Q Consensus 280 e~A~~Ai~~LnG~~i~Gr~I~V~~ak 305 (813)
++|..|+++|||.+|.||.|+..|-.
T Consensus 501 ~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 501 EAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred HHHHHHHHHHhhhhhccceeEEEEee
Confidence 99999999999999999999999854
No 34
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=6e-19 Score=180.29 Aligned_cols=167 Identities=23% Similarity=0.434 Sum_probs=140.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEe----CCCcceEEEEEEccHHHHHHHHHHhcCCc-ccc--ceeeeee
Q 003524 146 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKP-LRR--RKLDIHF 218 (813)
Q Consensus 146 ~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~-l~g--r~L~V~~ 218 (813)
+.|+|||+-|.+.-.|+|++.+|..||+|++|.+ .+.+||||||.|.+..+|+.||..|+|.. +-| ..|.|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 6799999999999999999999999999999973 67899999999999999999999999954 322 3455555
Q ss_pred cCCCCCCC------------------------------------------------------------------------
Q 003524 219 SIPKDNPS------------------------------------------------------------------------ 226 (813)
Q Consensus 219 a~pk~~~~------------------------------------------------------------------------ 226 (813)
+...+++.
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 32211000
Q ss_pred --------------------------------------------------------------------------------
Q 003524 227 -------------------------------------------------------------------------------- 226 (813)
Q Consensus 227 -------------------------------------------------------------------------------- 226 (813)
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence
Q ss_pred ----------------------CCcCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEe-----CCCCccEEEEEEcCH
Q 003524 227 ----------------------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDV 279 (813)
Q Consensus 227 ----------------------~~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri-----~~~srG~aFVeF~d~ 279 (813)
.+..+.++|||..||.+..+.||.++|-+||.|++.++ ++.+|.|+||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 00011158999999999999999999999999998754 778899999999999
Q ss_pred HHHHHHHHHhCCCccCCceEEEEecCCCcccch
Q 003524 280 RAAEAALKSLNRSDIAGKRIKLEPSRPGGARRN 312 (813)
Q Consensus 280 e~A~~Ai~~LnG~~i~Gr~I~V~~ak~~~~r~~ 312 (813)
.+|+.||.+|||..|+-|+|+|.+.+|++..|.
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanRP 370 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRP 370 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCccccCCC
Confidence 999999999999999999999999999987654
No 35
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=3e-18 Score=181.17 Aligned_cols=157 Identities=22% Similarity=0.465 Sum_probs=138.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE-----eCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecCC
Q 003524 147 SRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 221 (813)
Q Consensus 147 srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 221 (813)
-++|||+.|.+.+.|+.|+..|..||+|++|. .+++++|||||+|+-.|.|+.|++.|||..++||.|+|.. |
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr--P 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR--P 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC--C
Confidence 47899999999999999999999999999998 5899999999999999999999999999999999999984 3
Q ss_pred CCCCCC---------CcCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEe-----CCCCccEEEEEEcCHHHHHHHHH
Q 003524 222 KDNPSD---------KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALK 287 (813)
Q Consensus 222 k~~~~~---------~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~~Ai~ 287 (813)
...+.. +...-..|||..+.++++++||+.+|+.||+|++|.+ ....|||+||+|.+..+-..||.
T Consensus 191 sNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAia 270 (544)
T KOG0124|consen 191 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 270 (544)
T ss_pred CCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhh
Confidence 222211 1123368999999999999999999999999999976 34568999999999999999999
Q ss_pred HhCCCccCCceEEEEecC
Q 003524 288 SLNRSDIAGKRIKLEPSR 305 (813)
Q Consensus 288 ~LnG~~i~Gr~I~V~~ak 305 (813)
.||=..++|..|+|.-+-
T Consensus 271 sMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 271 SMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hcchhhcccceEeccccc
Confidence 999999999999987653
No 36
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.2e-17 Score=171.70 Aligned_cols=160 Identities=24% Similarity=0.370 Sum_probs=129.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecCCCCC
Q 003524 145 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 224 (813)
Q Consensus 145 ~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~ 224 (813)
...|||||+||+.++||+-|..||.+.|.|++|++... .|+|.|+.....
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~------------------------------e~~v~wa~~p~n 53 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD------------------------------ELKVNWATAPGN 53 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh------------------------------hhccccccCccc
Confidence 45699999999999999999999999999999874221 455666654433
Q ss_pred CCCCcCC-cceeeeeccCCCCCHHHHHHHhcccCCeEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCce
Q 003524 225 PSDKDLN-QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR 298 (813)
Q Consensus 225 ~~~~~~~-~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~ 298 (813)
.+....+ .--+||+.|...++.|+|++.|.+||+|.++|+ +.++|||+||.|.+.++|++||..|||..|++|.
T Consensus 54 Qsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~ 133 (321)
T KOG0148|consen 54 QSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRT 133 (321)
T ss_pred CCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccce
Confidence 3333322 346999999999999999999999999999876 6789999999999999999999999999999999
Q ss_pred EEEEecCCCcccc--------------------hhhhccchhccHHHHHHHHhhcC
Q 003524 299 IKLEPSRPGGARR--------------------NLMLQLNQELEQDESRILQHQVG 334 (813)
Q Consensus 299 I~V~~ak~~~~r~--------------------~~~~ql~~~~~~~~l~~~f~~~G 334 (813)
|+-.||..+.... .|+-.....++++.++..|.+||
T Consensus 134 IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG 189 (321)
T KOG0148|consen 134 IRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFG 189 (321)
T ss_pred eeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCC
Confidence 9999997654321 24444555677888888888777
No 37
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=4.9e-17 Score=172.08 Aligned_cols=237 Identities=15% Similarity=0.277 Sum_probs=183.2
Q ss_pred ccCccccccCCCCCCchhhHHhhcCCCcee---eeccCCCCCcccEEEEEeCChhhhc----ccCCcccCCCCCccCCCC
Q 003524 68 IMDDFDLRGLPSSLEDLEDYDIFGSGGGME---LEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEH 140 (813)
Q Consensus 68 v~del~l~~Lp~s~gEiel~~lF~~~G~v~---l~~D~~t~~s~G~afV~f~d~e~A~----~~~~~~~~n~~~~v~g~~ 140 (813)
+|..+||+.+...+.|..+...|..+|.+. +..|+.+++.+||+||+|.-.+.|. .++..-+.++.+++....
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 588999999999999999999999999754 6789999999999999999888765 444444444455544222
Q ss_pred CC------------CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE-----eCCCcceEEEEEEccHHHHHHHHHH
Q 003524 141 PY------------GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRA 203 (813)
Q Consensus 141 ~~------------~e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Ai~~ 203 (813)
.. +.+.-.+|||..+-++.+|+||+..|+.||+|..|. ..+.+|||+||+|.+..+-..|+..
T Consensus 192 NmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAias 271 (544)
T KOG0124|consen 192 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 271 (544)
T ss_pred CCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhh
Confidence 11 123457999999999999999999999999999998 3567999999999999999999999
Q ss_pred hcCCccccceeeeeecCCCCC-----------------------------------------------------------
Q 003524 204 LQNKPLRRRKLDIHFSIPKDN----------------------------------------------------------- 224 (813)
Q Consensus 204 Lng~~l~gr~L~V~~a~pk~~----------------------------------------------------------- 224 (813)
||-..++|.-|+|..+.....
T Consensus 272 MNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~ 351 (544)
T KOG0124|consen 272 MNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGT 351 (544)
T ss_pred cchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCC
Confidence 999999998887754210000
Q ss_pred ---------------------C----------------------------CCC---c-----------------------
Q 003524 225 ---------------------P----------------------------SDK---D----------------------- 229 (813)
Q Consensus 225 ---------------------~----------------------------~~~---~----------------------- 229 (813)
+ ..+ .
T Consensus 352 l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~s 431 (544)
T KOG0124|consen 352 LPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSS 431 (544)
T ss_pred ccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCcc
Confidence 0 000 0
Q ss_pred ------------CCcceeeeecc--CCCCC---HHHHHHHhcccCCeEEEEeCCCCcc---------EEEEEEcCHHHHH
Q 003524 230 ------------LNQGTLVVFNL--DPSVS---NEDLRQIFGAYGEVKEIRETPHKRH---------HKFIEFYDVRAAE 283 (813)
Q Consensus 230 ------------~~~~tLfV~NL--p~~vt---eedL~~lFs~fG~I~~iri~~~srG---------~aFVeF~d~e~A~ 283 (813)
...+.+.++|+ |.+++ +.+|++.+++||.|.+|.+...+.+ ..||+|....++.
T Consensus 432 ARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~ 511 (544)
T KOG0124|consen 432 ARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETH 511 (544)
T ss_pred HHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHH
Confidence 00135677776 44554 5789999999999999866433322 3799999999999
Q ss_pred HHHHHhCCCccCCceEEEEec
Q 003524 284 AALKSLNRSDIAGKRIKLEPS 304 (813)
Q Consensus 284 ~Ai~~LnG~~i~Gr~I~V~~a 304 (813)
+|+.+|+|+.|+|+++..+..
T Consensus 512 rak~ALdGRfFgGr~VvAE~Y 532 (544)
T KOG0124|consen 512 RAKQALDGRFFGGRKVVAEVY 532 (544)
T ss_pred HHHHhhccceecCceeehhhh
Confidence 999999999999999887654
No 38
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.72 E-value=1e-16 Score=162.33 Aligned_cols=162 Identities=27% Similarity=0.457 Sum_probs=142.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHH----HHhhcCCEEEEE--eCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeee
Q 003524 144 EHPSRTLFVRNINSNVEDSELRA----LFEQYGDIRTLY--TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 217 (813)
Q Consensus 144 e~~srtLfVgNLP~~vTeedL~~----lFs~fG~I~~v~--~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 217 (813)
..++.||||+||+..+..++|+. +|++||.|..|. .+.+.||.|||.|++.+.|-.|+++|+|..+.|+.++|+
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34667999999999999999988 999999999997 478899999999999999999999999999999999999
Q ss_pred ecCCCCCCCCC----------------------------------------------cCCcceeeeeccCCCCCHHHHHH
Q 003524 218 FSIPKDNPSDK----------------------------------------------DLNQGTLVVFNLDPSVSNEDLRQ 251 (813)
Q Consensus 218 ~a~pk~~~~~~----------------------------------------------~~~~~tLfV~NLp~~vteedL~~ 251 (813)
||..+.....+ ...+..|++.|||.+++.+.|..
T Consensus 86 yA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~ 165 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSD 165 (221)
T ss_pred cccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHH
Confidence 98654321100 12345899999999999999999
Q ss_pred HhcccCCeEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccC-CceEEEEecC
Q 003524 252 IFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIA-GKRIKLEPSR 305 (813)
Q Consensus 252 lFs~fG~I~~iri~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~-Gr~I~V~~ak 305 (813)
+|.+|...++|+.....++.|||+|.+...|..|...|.|..|. ...++|.+++
T Consensus 166 lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 166 LFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999999999988878899999999999999999999999887 7888888875
No 39
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.71 E-value=1.2e-14 Score=157.29 Aligned_cols=160 Identities=24% Similarity=0.386 Sum_probs=133.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHh-hcCCEEEEE----eCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecC
Q 003524 146 PSRTLFVRNINSNVEDSELRALFE-QYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 220 (813)
Q Consensus 146 ~srtLfVgNLP~~vTeedL~~lFs-~fG~I~~v~----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 220 (813)
..|.+||.|||+++...+|++||. +.|+|+.|. ..+|.||||.|+|+++|.+++|++.||...+.||+|.|+-..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 356799999999999999999998 789999987 479999999999999999999999999999999999986421
Q ss_pred CCCC------------------------------------------CCCCc-----------------------------
Q 003524 221 PKDN------------------------------------------PSDKD----------------------------- 229 (813)
Q Consensus 221 pk~~------------------------------------------~~~~~----------------------------- 229 (813)
..+. ..+++
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 1000 00000
Q ss_pred ----------CCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEe----CCCCccEEEEEEcCHHHHHHHHHHhCCCccC
Q 003524 230 ----------LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 295 (813)
Q Consensus 230 ----------~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri----~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~ 295 (813)
.....+||.||...+..+.|++.|.--|.|+.|.+ .+.++|++.|+|+.+-+|..||..|++.-+.
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~ 282 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLF 282 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCc
Confidence 00137899999999999999999999999988853 4678999999999999999999999998777
Q ss_pred CceEEEEecC
Q 003524 296 GKRIKLEPSR 305 (813)
Q Consensus 296 Gr~I~V~~ak 305 (813)
.++.++...+
T Consensus 283 ~~~~~~Rl~~ 292 (608)
T KOG4212|consen 283 DRRMTVRLDR 292 (608)
T ss_pred cccceeeccc
Confidence 8888887754
No 40
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.67 E-value=7.8e-16 Score=165.64 Aligned_cols=236 Identities=22% Similarity=0.320 Sum_probs=176.7
Q ss_pred CccccccCCCCCCchhhHHhhcCCCceeeeccCCCCCcccEEEEEeCChhhhcccCCccc------CCC-----------
Q 003524 70 DDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEPQESLSMSMSKISISDSASGNGLLHYSV------PNG----------- 132 (813)
Q Consensus 70 del~l~~Lp~s~gEiel~~lF~~~G~v~l~~D~~t~~s~G~afV~f~d~e~A~~~~~~~~------~n~----------- 132 (813)
.-+.+|+||++++|.|++.++..+|.+.- ...-+++.-||++|.|.++|..+..+.. .+.
T Consensus 29 kV~HlRnlp~e~tE~elI~Lg~pFG~vtn---~~~lkGknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~sn~~~ 105 (492)
T KOG1190|consen 29 KVVHLRNLPWEVTEEELISLGLPFGKVTN---LLMLKGKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYSNHSE 105 (492)
T ss_pred ceeEeccCCccccHHHHHHhcccccceee---eeeeccchhhhhhhcchhhhhheeecccccCccccCcceeehhhhHHH
Confidence 44789999999999999999999998641 1112344579999999888765322210 000
Q ss_pred ------CCccCC---------------------CCC-CCCC--CCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEeCCC
Q 003524 133 ------AGTVAG---------------------EHP-YGEH--PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACK 182 (813)
Q Consensus 133 ------~~~v~g---------------------~~~-~~e~--~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~~~k 182 (813)
+....+ ... .... +--+++|.++-+-++-+-|..+|++||.|..|.+..|
T Consensus 106 lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~K 185 (492)
T KOG1190|consen 106 LKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTK 185 (492)
T ss_pred HhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEec
Confidence 000000 000 0111 2235788999999999999999999999999988778
Q ss_pred cceE-EEEEEccHHHHHHHHHHhcCCcccc--ceeeeeecCC----------CCC-------CCC---------------
Q 003524 183 HRGF-VMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSIP----------KDN-------PSD--------------- 227 (813)
Q Consensus 183 srG~-AFV~F~d~e~A~~Ai~~Lng~~l~g--r~L~V~~a~p----------k~~-------~~~--------------- 227 (813)
..|| |.|+|.|.+.|+.|..+|+|..|.. +.|+|.|++- +.. +..
T Consensus 186 nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~ 265 (492)
T KOG1190|consen 186 NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFG 265 (492)
T ss_pred ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhcccc
Confidence 8887 9999999999999999999988753 4666665421 100 000
Q ss_pred ---------C----------------cC--CcceeeeeccCCC-CCHHHHHHHhcccCCeEEEEeCCCCccEEEEEEcCH
Q 003524 228 ---------K----------------DL--NQGTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDV 279 (813)
Q Consensus 228 ---------~----------------~~--~~~tLfV~NLp~~-vteedL~~lFs~fG~I~~iri~~~srG~aFVeF~d~ 279 (813)
. .. ....|.|.||..+ +|.+.|..+|+.||+|.+|++.-+++..|.|+|.|.
T Consensus 266 ~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~ 345 (492)
T KOG1190|consen 266 SVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDG 345 (492)
T ss_pred ccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecch
Confidence 0 00 0246888888654 899999999999999999999777788999999999
Q ss_pred HHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003524 280 RAAEAALKSLNRSDIAGKRIKLEPSRPGG 308 (813)
Q Consensus 280 e~A~~Ai~~LnG~~i~Gr~I~V~~ak~~~ 308 (813)
..|+-|+..|+|..+.||+|+|.+++...
T Consensus 346 ~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 346 QQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred hHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 99999999999999999999999998765
No 41
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.61 E-value=1.2e-15 Score=164.91 Aligned_cols=162 Identities=18% Similarity=0.395 Sum_probs=141.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE-----eCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecC
Q 003524 146 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 220 (813)
Q Consensus 146 ~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 220 (813)
..++|||++|+++++++.|++.|.+||+|..|. .+++++||+||+|.+.+...+++. ...+.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 678999999999999999999999999999987 368899999999999999999887 46678999999999998
Q ss_pred CCCCCCCCcC--CcceeeeeccCCCCCHHHHHHHhcccCCeEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCc
Q 003524 221 PKDNPSDKDL--NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSD 293 (813)
Q Consensus 221 pk~~~~~~~~--~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~~Ai~~LnG~~ 293 (813)
+......... ...++||++||.+++++++++.|.+||.|..+.+ +.+.++|+||.|++++++.+++. ..-+.
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 8765443322 3568999999999999999999999998877743 55679999999999999998886 67889
Q ss_pred cCCceEEEEecCCCcc
Q 003524 294 IAGKRIKLEPSRPGGA 309 (813)
Q Consensus 294 i~Gr~I~V~~ak~~~~ 309 (813)
|.|+.+.|.-|.|+..
T Consensus 163 ~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEV 178 (311)
T ss_pred ecCceeeEeeccchhh
Confidence 9999999999998763
No 42
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.60 E-value=5.5e-16 Score=172.80 Aligned_cols=162 Identities=23% Similarity=0.381 Sum_probs=139.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE-----eCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeee
Q 003524 143 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 217 (813)
Q Consensus 143 ~e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 217 (813)
.+...+++|+--|+..++..+|.++|+.+|.|..|. .+.+++|.|||+|.|.+....||. |.|..+.|.+|.|+
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEec
Confidence 455678999999999999999999999999999987 467799999999999999999996 99999999999998
Q ss_pred ecCCCCCCCC--------C--cCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEe-----CCCCccEEEEEEcCHHHH
Q 003524 218 FSIPKDNPSD--------K--DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAA 282 (813)
Q Consensus 218 ~a~pk~~~~~--------~--~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri-----~~~srG~aFVeF~d~e~A 282 (813)
......+... + ...-..|||+||..++++++|+.+|++||.|..|.+ ++.++||+||+|.+.++|
T Consensus 254 ~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 254 LSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred ccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHH
Confidence 7543221100 0 011123999999999999999999999999999854 678899999999999999
Q ss_pred HHHHHHhCCCccCCceEEEEecC
Q 003524 283 EAALKSLNRSDIAGKRIKLEPSR 305 (813)
Q Consensus 283 ~~Ai~~LnG~~i~Gr~I~V~~ak 305 (813)
.+|+..|||.+|.|+.|+|....
T Consensus 334 r~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 334 RKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred HHHHHHhccceecCceEEEEEee
Confidence 99999999999999999998653
No 43
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=1.3e-14 Score=141.95 Aligned_cols=149 Identities=22% Similarity=0.329 Sum_probs=127.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEeCCC--cceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecCCC
Q 003524 145 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACK--HRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 222 (813)
Q Consensus 145 ~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~~~k--srG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 222 (813)
..+++|||+|||.++-+.||+++|.+||.|..|.+..+ .-.||||+|++..+|+.||..-+|..+.|..|+|+++...
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 45789999999999999999999999999999985443 4579999999999999999999999999999999998643
Q ss_pred CCCCC----------------------CcCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEeCCCCccEEEEEEcCHH
Q 003524 223 DNPSD----------------------KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVR 280 (813)
Q Consensus 223 ~~~~~----------------------~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri~~~srG~aFVeF~d~e 280 (813)
..... ....+..+.|++||++-+.+||++...+-|.|....+.. .+++.|+|...+
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~r--Dg~GvV~~~r~e 161 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQR--DGVGVVEYLRKE 161 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeec--ccceeeeeeehh
Confidence 21100 111234799999999999999999999999999888754 468999999999
Q ss_pred HHHHHHHHhCCCccC
Q 003524 281 AAEAALKSLNRSDIA 295 (813)
Q Consensus 281 ~A~~Ai~~LnG~~i~ 295 (813)
+.+-|++.|+...+.
T Consensus 162 DMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 162 DMKYAVRKLDDQKFR 176 (241)
T ss_pred hHHHHHHhhcccccc
Confidence 999999999987664
No 44
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.54 E-value=2.2e-13 Score=147.55 Aligned_cols=70 Identities=23% Similarity=0.292 Sum_probs=64.5
Q ss_pred ceeeeeccCCCCCHHHHHHHhcccCCeEEEEe--CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003524 233 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 304 (813)
Q Consensus 233 ~tLfV~NLp~~vteedL~~lFs~fG~I~~iri--~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~a 304 (813)
++|+|+|||.+.|.+.|++.|..||.|.++.+ .++++ +.|+|.++++|++|+..|+|..+.|+.|+|.|.
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~Gksk--GVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSK--GVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhccceehhhhhccCCcc--ceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 37999999999999999999999999999887 55555 599999999999999999999999999999874
No 45
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=5.1e-14 Score=160.87 Aligned_cols=191 Identities=25% Similarity=0.357 Sum_probs=153.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecCCCC
Q 003524 144 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 223 (813)
Q Consensus 144 e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 223 (813)
+...+.|+|+|||..+..++|..+|..||+|..+.+. ..---++|.|.+..+|.+|.+.|....+...++++.|+....
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp-~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dv 460 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP-PGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDV 460 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecC-cccceeeeeecCccchHHHHHHhchhhhccCccccccChhhh
Confidence 3445789999999999999999999999999998543 222349999999999999999999999888888877652110
Q ss_pred C--------------------CCC------------Cc-------------C-CcceeeeeccCCCCCHHHHHHHhcccC
Q 003524 224 N--------------------PSD------------KD-------------L-NQGTLVVFNLDPSVSNEDLRQIFGAYG 257 (813)
Q Consensus 224 ~--------------------~~~------------~~-------------~-~~~tLfV~NLp~~vteedL~~lFs~fG 257 (813)
. +.. .+ . ...+|||.||++++|.++|...|.++|
T Consensus 461 f~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G 540 (725)
T KOG0110|consen 461 FTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQG 540 (725)
T ss_pred ccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcC
Confidence 0 000 00 0 012499999999999999999999999
Q ss_pred CeEEEEeCCC--------CccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC--------CCc---c--cchhhhc
Q 003524 258 EVKEIRETPH--------KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR--------PGG---A--RRNLMLQ 316 (813)
Q Consensus 258 ~I~~iri~~~--------srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak--------~~~---~--r~~~~~q 316 (813)
.|.++.+..+ +.|||||+|.+.++|+.|++.|+|+.+.|+.|.|+++. ++. . .+.++++
T Consensus 541 ~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRN 620 (725)
T KOG0110|consen 541 TVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILVRN 620 (725)
T ss_pred eEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccceeeeec
Confidence 9999976332 24999999999999999999999999999999999988 111 1 1346778
Q ss_pred cchhccHHHHHHHHhhcCC
Q 003524 317 LNQELEQDESRILQHQVGS 335 (813)
Q Consensus 317 l~~~~~~~~l~~~f~~~Gs 335 (813)
+.-+.+..+++.+|..||.
T Consensus 621 ipFeAt~rEVr~LF~aFGq 639 (725)
T KOG0110|consen 621 IPFEATKREVRKLFTAFGQ 639 (725)
T ss_pred cchHHHHHHHHHHHhcccc
Confidence 8878888999999999983
No 46
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.50 E-value=3.5e-14 Score=147.56 Aligned_cols=147 Identities=20% Similarity=0.313 Sum_probs=125.2
Q ss_pred cCccccccCCCCCCchhhHHhhcCCCceeeeccCCCCCcccEEEEEeCChhhhc----ccCCcccCCCCCccCCCCCCCC
Q 003524 69 MDDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHPYGE 144 (813)
Q Consensus 69 ~del~l~~Lp~s~gEiel~~lF~~~G~v~l~~D~~t~~s~G~afV~f~d~e~A~----~~~~~~~~n~~~~v~g~~~~~e 144 (813)
+.++||++||...++.++..+|..+|.|. +.|. -|.|+||...|..++. .+.+|++.+..+.+...+.. .
T Consensus 2 ~~KLFIGNLp~~~~~~elr~lFe~ygkVl-ECDI----vKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK-s 75 (346)
T KOG0109|consen 2 PVKLFIGNLPREATEQELRSLFEQYGKVL-ECDI----VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK-S 75 (346)
T ss_pred ccchhccCCCcccchHHHHHHHHhhCceE-eeee----ecccceEEeecccccHHHHhhcccceecceEEEEEecccc-C
Confidence 46789999999999999999999999863 2342 2469999988766543 47788888888877766554 5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecCCCCC
Q 003524 145 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 224 (813)
Q Consensus 145 ~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~ 224 (813)
+.+++|+|+||.+.++..||+..|++||.|.+|++ -++|+||.|.-.++|..|++.|++.++.|+++.|+.+...-.
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdi---vkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDI---VKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 152 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeee---ecceeEEEEeeccchHHHHhcccccccccceeeeeeeccccc
Confidence 67899999999999999999999999999999976 468999999999999999999999999999999999876543
No 47
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.47 E-value=6.1e-14 Score=137.49 Aligned_cols=157 Identities=16% Similarity=0.259 Sum_probs=128.8
Q ss_pred CccccccCCCCCCchhhHHhhcCCCc---eeeeccCCCCCcccEEEEEeCChhhhc----ccCCcccCCCCCccCCC--C
Q 003524 70 DDFDLRGLPSSLEDLEDYDIFGSGGG---MELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGE--H 140 (813)
Q Consensus 70 del~l~~Lp~s~gEiel~~lF~~~G~---v~l~~D~~t~~s~G~afV~f~d~e~A~----~~~~~~~~n~~~~v~g~--~ 140 (813)
..+||++|+..+.+..++++|-++|. +.+..|..+...+||||++|.+.+.|. .++..++-++++++... .
T Consensus 10 ~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~ 89 (203)
T KOG0131|consen 10 ATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAH 89 (203)
T ss_pred ceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecccc
Confidence 35799999999999999999999996 457888889999999999999988776 33444555555544422 2
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEE---E---eCCCcceEEEEEEccHHHHHHHHHHhcCCcccccee
Q 003524 141 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTL---Y---TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKL 214 (813)
Q Consensus 141 ~~~e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v---~---~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L 214 (813)
...-.-..+|||+||.+.++|..|.+.|+.||.|... . .++..+|||||.|.+.+.+.+|+..++|..+..+++
T Consensus 90 ~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~i 169 (203)
T KOG0131|consen 90 QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPI 169 (203)
T ss_pred cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCce
Confidence 2233445899999999999999999999999987652 1 468899999999999999999999999999999999
Q ss_pred eeeecCCCCCCC
Q 003524 215 DIHFSIPKDNPS 226 (813)
Q Consensus 215 ~V~~a~pk~~~~ 226 (813)
.|.++..+....
T Consensus 170 tv~ya~k~~~kg 181 (203)
T KOG0131|consen 170 TVSYAFKKDTKG 181 (203)
T ss_pred EEEEEEecCCCc
Confidence 999998665433
No 48
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=6.1e-14 Score=143.50 Aligned_cols=150 Identities=26% Similarity=0.430 Sum_probs=129.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecCCCCCCC-
Q 003524 148 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPS- 226 (813)
Q Consensus 148 rtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~- 226 (813)
..+||++||+.+.+.+|..+|..||.|..+.+ ..||+||+|.+..+|..|+..|+++.|.+..+.|.++.......
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m---k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g 78 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM---KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRG 78 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee---ecccceeccCchhhhhcccchhcCceecceeeeeecccccccccC
Confidence 46999999999999999999999999999865 35899999999999999999999999999889999987421100
Q ss_pred ---------------CCcCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCC
Q 003524 227 ---------------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR 291 (813)
Q Consensus 227 ---------------~~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri~~~srG~aFVeF~d~e~A~~Ai~~LnG 291 (813)
........|+|.++...+.+.+|.+.|.++|.+..... ..+++||+|...++|.+|+..|++
T Consensus 79 ~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~ 155 (216)
T KOG0106|consen 79 RPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDG 155 (216)
T ss_pred CCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccc
Confidence 01123457899999999999999999999999955544 568999999999999999999999
Q ss_pred CccCCceEEEEe
Q 003524 292 SDIAGKRIKLEP 303 (813)
Q Consensus 292 ~~i~Gr~I~V~~ 303 (813)
..+.|+.|++..
T Consensus 156 ~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 156 KKLNGRRISVEK 167 (216)
T ss_pred hhhcCceeeecc
Confidence 999999999933
No 49
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.46 E-value=1.4e-12 Score=140.89 Aligned_cols=160 Identities=26% Similarity=0.359 Sum_probs=136.2
Q ss_pred CCEEEEcCCCCC-CCHHHHHHHHhhcCCEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecCCCCCC
Q 003524 147 SRTLFVRNINSN-VEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNP 225 (813)
Q Consensus 147 srtLfVgNLP~~-vTeedL~~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~ 225 (813)
+..|.|.||..+ +|.+.|..+|.-||+|..|++..+.+--|.|+|.|...|+-|++.|+|..+.|++|+|.+++...-.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 478889999765 8999999999999999999976666789999999999999999999999999999999998643211
Q ss_pred CCC----c---------------------------CCcceeeeeccCCCCCHHHHHHHhcccCCe-EEEEeCCCCccEEE
Q 003524 226 SDK----D---------------------------LNQGTLVVFNLDPSVSNEDLRQIFGAYGEV-KEIRETPHKRHHKF 273 (813)
Q Consensus 226 ~~~----~---------------------------~~~~tLfV~NLp~~vteedL~~lFs~fG~I-~~iri~~~srG~aF 273 (813)
..+ + ....+|.+.|+|.+++||+|+..|..-|-. +..+..++.+.+|+
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal 456 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMAL 456 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceee
Confidence 100 0 112489999999999999999999988754 55677777788999
Q ss_pred EEEcCHHHHHHHHHHhCCCccCC-ceEEEEecCC
Q 003524 274 IEFYDVRAAEAALKSLNRSDIAG-KRIKLEPSRP 306 (813)
Q Consensus 274 VeF~d~e~A~~Ai~~LnG~~i~G-r~I~V~~ak~ 306 (813)
+.+.++|+|..|+..++.+.++. ..|+|+|++.
T Consensus 457 ~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 457 PQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred cccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 99999999999999999999986 5999999875
No 50
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.42 E-value=1e-12 Score=128.32 Aligned_cols=81 Identities=23% Similarity=0.437 Sum_probs=74.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEe-----CCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeee
Q 003524 144 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 218 (813)
Q Consensus 144 e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 218 (813)
...+++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 345789999999999999999999999999999873 578899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 003524 219 SIPKDN 224 (813)
Q Consensus 219 a~pk~~ 224 (813)
+.++..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 876543
No 51
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.42 E-value=6.4e-13 Score=129.81 Aligned_cols=78 Identities=24% Similarity=0.453 Sum_probs=71.9
Q ss_pred CcceeeeeccCCCCCHHHHHHHhcccCCeEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003524 231 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 305 (813)
Q Consensus 231 ~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak 305 (813)
..++|||+||+.++++++|+++|++||+|++|++ ++++++||||+|.+.++|++|++.||+..|.|++|+|++++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 4568999999999999999999999999999876 45679999999999999999999999999999999999997
Q ss_pred CCc
Q 003524 306 PGG 308 (813)
Q Consensus 306 ~~~ 308 (813)
++.
T Consensus 113 ~~~ 115 (144)
T PLN03134 113 DRP 115 (144)
T ss_pred cCC
Confidence 653
No 52
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.41 E-value=1.5e-12 Score=131.12 Aligned_cols=150 Identities=21% Similarity=0.350 Sum_probs=115.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE--eCCCc----ceEEEEEEccHHHHHHHHHHhcCCccc---cceeee
Q 003524 146 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY--TACKH----RGFVMISYYDIRAARTAMRALQNKPLR---RRKLDI 216 (813)
Q Consensus 146 ~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~--~~~ks----rG~AFV~F~d~e~A~~Ai~~Lng~~l~---gr~L~V 216 (813)
.-|||||.+||.++...||..+|..|-..+.+. .+.+. +-+|||.|.+..+|..|+.+|||..+. +..|.|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 469999999999999999999999986655543 34433 479999999999999999999999885 677888
Q ss_pred eecCCCCCCCCC---------------------------------------------------c----------------
Q 003524 217 HFSIPKDNPSDK---------------------------------------------------D---------------- 229 (813)
Q Consensus 217 ~~a~pk~~~~~~---------------------------------------------------~---------------- 229 (813)
++++......+. +
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 776432100000 0
Q ss_pred ---------------CCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEeCCC-CccEEEEEEcCHHHHHHHHHHhCCCc
Q 003524 230 ---------------LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH-KRHHKFIEFYDVRAAEAALKSLNRSD 293 (813)
Q Consensus 230 ---------------~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri~~~-srG~aFVeF~d~e~A~~Ai~~LnG~~ 293 (813)
....||||-||..+++|++|+++|+.|-....+++..+ .-..|||+|++.+.|..|+..|.|..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 00038999999999999999999999975555554222 23479999999999999999999886
Q ss_pred cC
Q 003524 294 IA 295 (813)
Q Consensus 294 i~ 295 (813)
|.
T Consensus 273 ~s 274 (284)
T KOG1457|consen 273 LS 274 (284)
T ss_pred ec
Confidence 64
No 53
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.38 E-value=7e-12 Score=133.39 Aligned_cols=163 Identities=15% Similarity=0.253 Sum_probs=133.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEE--------EE----eCCCcceEEEEEEccHHHHHHHHHHhcCCccccc
Q 003524 145 HPSRTLFVRNINSNVEDSELRALFEQYGDIRT--------LY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRR 212 (813)
Q Consensus 145 ~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~--------v~----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr 212 (813)
.-++.|||.|||.++|.+++.++|+++|-|.. |+ ..|+.+|-|.+.|...+++..|++.|++..++|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 34677999999999999999999999998764 22 3678899999999999999999999999999999
Q ss_pred eeeeeecCCCCC----------------------------------CCCCcCCcceeeeeccCC----CCC-------HH
Q 003524 213 KLDIHFSIPKDN----------------------------------PSDKDLNQGTLVVFNLDP----SVS-------NE 247 (813)
Q Consensus 213 ~L~V~~a~pk~~----------------------------------~~~~~~~~~tLfV~NLp~----~vt-------ee 247 (813)
+|+|+.|.-... ...+....++|.++|+-. ..+ ++
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 999987632100 001112346899999842 122 47
Q ss_pred HHHHHhcccCCeEEEEe-CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003524 248 DLRQIFGAYGEVKEIRE-TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 307 (813)
Q Consensus 248 dL~~lFs~fG~I~~iri-~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak~~ 307 (813)
+|++-+++||.|..|.+ ..++.|.+-|.|.+.++|..||+.|+|+.|.||+|..+...-+
T Consensus 292 dl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 78888999999999876 4567899999999999999999999999999999999876544
No 54
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.35 E-value=2.6e-12 Score=139.17 Aligned_cols=156 Identities=13% Similarity=0.231 Sum_probs=116.9
Q ss_pred CccccccCCCCCCchhhHHhhcCCCc---eeeeccCCCCCcccEEEEEeCChhhhc---ccCCcccCCCCCccCCCC---
Q 003524 70 DDFDLRGLPSSLEDLEDYDIFGSGGG---MELEGEPQESLSMSMSKISISDSASGN---GLLHYSVPNGAGTVAGEH--- 140 (813)
Q Consensus 70 del~l~~Lp~s~gEiel~~lF~~~G~---v~l~~D~~t~~s~G~afV~f~d~e~A~---~~~~~~~~n~~~~v~g~~--- 140 (813)
.+++|++|.++..+..+.+.|.+.|. +.++.|+.+++++||+||+|.+.+... ......+.+..+......
T Consensus 7 ~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~ 86 (311)
T KOG4205|consen 7 GKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSRE 86 (311)
T ss_pred cceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccCcc
Confidence 45566666666667777777777775 347789999999999999999765433 222333433322221111
Q ss_pred ----CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE-----eCCCcceEEEEEEccHHHHHHHHHHhcCCcccc
Q 003524 141 ----PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRR 211 (813)
Q Consensus 141 ----~~~e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~g 211 (813)
......+++|||++||.+++++++++.|++||.|..+. .+.+.+||+||.|.+++.+++++. ..-+.|.+
T Consensus 87 ~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~g 165 (311)
T KOG4205|consen 87 DQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNG 165 (311)
T ss_pred cccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecC
Confidence 11222466999999999999999999999999887765 467899999999999999999988 57889999
Q ss_pred ceeeeeecCCCCCCC
Q 003524 212 RKLDIHFSIPKDNPS 226 (813)
Q Consensus 212 r~L~V~~a~pk~~~~ 226 (813)
+.+.|..|.|++...
T Consensus 166 k~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 166 KKVEVKRAIPKEVMQ 180 (311)
T ss_pred ceeeEeeccchhhcc
Confidence 999999999987543
No 55
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.34 E-value=5.6e-11 Score=127.20 Aligned_cols=232 Identities=17% Similarity=0.265 Sum_probs=176.0
Q ss_pred ccccccCCCCCCchhhHHhhcCCCceee-eccCCCCCcccEEEEEeCChhhhcccCCcccCCC------------C--Cc
Q 003524 71 DFDLRGLPSSLEDLEDYDIFGSGGGMEL-EGEPQESLSMSMSKISISDSASGNGLLHYSVPNG------------A--GT 135 (813)
Q Consensus 71 el~l~~Lp~s~gEiel~~lF~~~G~v~l-~~D~~t~~s~G~afV~f~d~e~A~~~~~~~~~n~------------~--~~ 135 (813)
-+.||+|-..+.|.++++..+.+|.+-. +.-+. +-.+.|+|.|.+.|...+++...+. . .+
T Consensus 33 vvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~----~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~ 108 (494)
T KOG1456|consen 33 VVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH----KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQC 108 (494)
T ss_pred eEEEeccccccchhHHHHHHhcCCceEEEEeccc----cceeeeeeccccchhhheehhccCcccccCchhhcccchhhh
Confidence 4689999999999999999999998542 22222 2357888887776654433332221 0 01
Q ss_pred cCCCCCCCCCCCCEEEEcCCC--CCCCHHHHHHHHhhcCCEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcCCccc--c
Q 003524 136 VAGEHPYGEHPSRTLFVRNIN--SNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR--R 211 (813)
Q Consensus 136 v~g~~~~~e~~srtLfVgNLP--~~vTeedL~~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~--g 211 (813)
+.........++..|.+.=|. +.+|.+-|..+....|+|..|.+..|.--.|+|+|++.+.|++|..+|||..|. -
T Consensus 109 i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGC 188 (494)
T KOG1456|consen 109 IERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGC 188 (494)
T ss_pred hccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccc
Confidence 111112233455666665554 568999999999999999999988887678999999999999999999998885 4
Q ss_pred ceeeeeecCCCCCCCC-------------------Cc-------------------------------------------
Q 003524 212 RKLDIHFSIPKDNPSD-------------------KD------------------------------------------- 229 (813)
Q Consensus 212 r~L~V~~a~pk~~~~~-------------------~~------------------------------------------- 229 (813)
.+|+|+|++|...... ..
T Consensus 189 CTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~ 268 (494)
T KOG1456|consen 189 CTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRY 268 (494)
T ss_pred eeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCC
Confidence 6899999877421000 00
Q ss_pred ----------------CCcceeeeeccCCC-CCHHHHHHHhcccCCeEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCC
Q 003524 230 ----------------LNQGTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRS 292 (813)
Q Consensus 230 ----------------~~~~tLfV~NLp~~-vteedL~~lFs~fG~I~~iri~~~srG~aFVeF~d~e~A~~Ai~~LnG~ 292 (813)
.....+.|.+|+.. +.-+.|..+|..||.|..|++...+.|.|.|++.|..+.++|+..||+.
T Consensus 269 ~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~ 348 (494)
T KOG1456|consen 269 RDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNI 348 (494)
T ss_pred ccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccC
Confidence 00126889999875 6789999999999999999998888899999999999999999999999
Q ss_pred ccCCceEEEEecCC
Q 003524 293 DIAGKRIKLEPSRP 306 (813)
Q Consensus 293 ~i~Gr~I~V~~ak~ 306 (813)
.+.|.+|.|.+++.
T Consensus 349 ~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 349 PLFGGKLNVCVSKQ 362 (494)
T ss_pred ccccceEEEeeccc
Confidence 99999999999864
No 56
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=1.4e-11 Score=139.49 Aligned_cols=236 Identities=15% Similarity=0.252 Sum_probs=164.1
Q ss_pred CccccccCCCCCCchhhHHhhcCC-----------CceeeeccCCCCCcccEEEEEeCChhhhcc---cCCcccCCCCCc
Q 003524 70 DDFDLRGLPSSLEDLEDYDIFGSG-----------GGMELEGEPQESLSMSMSKISISDSASGNG---LLHYSVPNGAGT 135 (813)
Q Consensus 70 del~l~~Lp~s~gEiel~~lF~~~-----------G~v~l~~D~~t~~s~G~afV~f~d~e~A~~---~~~~~~~n~~~~ 135 (813)
-.+++.+++..+.|.+...+|... |.-.+ -..-...+.++|++|.+.+.|.. ...+-..+...+
T Consensus 176 ~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~--s~~~n~~~nfa~ie~~s~~~at~~~~~~~~~f~g~~~~ 253 (500)
T KOG0120|consen 176 RRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFV--SVQLNLEKNFAFIEFRSISEATEAMALDGIIFEGRPLK 253 (500)
T ss_pred hhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCcee--eeeecccccceeEEecCCCchhhhhcccchhhCCCCce
Confidence 457899999999998887777652 11011 12234567899999987654431 111111111000
Q ss_pred c------------------------CCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE-----eCCCcceE
Q 003524 136 V------------------------AGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGF 186 (813)
Q Consensus 136 v------------------------~g~~~~~e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~-----~~~ksrG~ 186 (813)
+ ....+.......++||++||..+++.+++++.+.||+++... .++-++||
T Consensus 254 ~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~ 333 (500)
T KOG0120|consen 254 IRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGF 333 (500)
T ss_pred ecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccce
Confidence 0 011112223456899999999999999999999999987765 35789999
Q ss_pred EEEEEccHHHHHHHHHHhcCCccccceeeeeecCCCCCCCCCc--------------------CCcceeeeeccC--CCC
Q 003524 187 VMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKD--------------------LNQGTLVVFNLD--PSV 244 (813)
Q Consensus 187 AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~~~--------------------~~~~tLfV~NLp--~~v 244 (813)
||.+|.+......|+..|||+.+.+++|.|+.+.+........ .....|.+.|+= .++
T Consensus 334 af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deL 413 (500)
T KOG0120|consen 334 AFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDEL 413 (500)
T ss_pred eeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHh
Confidence 9999999999999999999999999999999876543211111 111233333331 111
Q ss_pred -C-------HHHHHHHhcccCCeEEEEeCCC--------CccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003524 245 -S-------NEDLRQIFGAYGEVKEIRETPH--------KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 307 (813)
Q Consensus 245 -t-------eedL~~lFs~fG~I~~iri~~~--------srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak~~ 307 (813)
. .|+++.-+.+||.|..|.+... ..|..||+|.+.++|++|..+|+|.++.|+.|...|....
T Consensus 414 kdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 414 KDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred cchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 1 2567778899999999976322 3567999999999999999999999999999999997543
No 57
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.29 E-value=9.5e-12 Score=104.54 Aligned_cols=66 Identities=36% Similarity=0.634 Sum_probs=61.4
Q ss_pred eeeeccCCCCCHHHHHHHhcccCCeEEEEeC----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 003524 235 LVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 300 (813)
Q Consensus 235 LfV~NLp~~vteedL~~lFs~fG~I~~iri~----~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~ 300 (813)
|||+|||.++++++|+++|++||.|..+++. +..+++|||+|.+.++|++|++.|+|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999988763 45688999999999999999999999999999985
No 58
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.27 E-value=1.2e-11 Score=103.97 Aligned_cols=66 Identities=29% Similarity=0.603 Sum_probs=61.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCEEEEEe----CCCcceEEEEEEccHHHHHHHHHHhcCCccccceee
Q 003524 150 LFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 215 (813)
Q Consensus 150 LfVgNLP~~vTeedL~~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~ 215 (813)
|||+|||.++|+++|+++|++||.|..+.+ .++.+++|||+|.+.++|++|++.|+|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999988873 467899999999999999999999999999999875
No 59
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=7.2e-12 Score=122.38 Aligned_cols=77 Identities=30% Similarity=0.475 Sum_probs=72.7
Q ss_pred cceeeeeccCCCCCHHHHHHHhcccCCeEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003524 232 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 308 (813)
Q Consensus 232 ~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak~~~ 308 (813)
.++|||+||+..+++.||+.+|..||.|..|-+.....|||||||+|+.+|+.|+..|+|+.|.|.+|+|+++.-..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 57899999999999999999999999999999887889999999999999999999999999999999999986543
No 60
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=1.5e-11 Score=120.23 Aligned_cols=77 Identities=26% Similarity=0.512 Sum_probs=73.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecCCC
Q 003524 146 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 222 (813)
Q Consensus 146 ~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 222 (813)
-.++|||+||+.++++.||+.+|..||.|..|++.....|||||+|++..+|+.|+..|+|+.|.|..|.|+++.-.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 36899999999999999999999999999999998899999999999999999999999999999999999998644
No 61
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.22 E-value=1.4e-10 Score=128.64 Aligned_cols=158 Identities=18% Similarity=0.275 Sum_probs=124.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE---eCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecCCCC
Q 003524 147 SRTLFVRNINSNVEDSELRALFEQYGDIRTLY---TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 223 (813)
Q Consensus 147 srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~---~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 223 (813)
..-|-+++||+++|++||.++|+.++ |+.+. .+++..|-|||+|.+++++++|++ .+...+..+-|.|--+.+++
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~e 87 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGAE 87 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCcc
Confidence 45677899999999999999999885 55554 568999999999999999999999 58888888888887665443
Q ss_pred CCC-------CCcCCcceeeeeccCCCCCHHHHHHHhcccCCeEE-EE----eCCCCccEEEEEEcCHHHHHHHHHHhCC
Q 003524 224 NPS-------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE-IR----ETPHKRHHKFIEFYDVRAAEAALKSLNR 291 (813)
Q Consensus 224 ~~~-------~~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~-ir----i~~~srG~aFVeF~d~e~A~~Ai~~LnG 291 (813)
... ........|.+++||+.+|++||.++|+..-.|.. |- ..+++.|-|||+|++.+.|++|+. -|.
T Consensus 88 ~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhr 166 (510)
T KOG4211|consen 88 ADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHR 166 (510)
T ss_pred ccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHH
Confidence 211 11135568999999999999999999997644433 21 234567889999999999999998 467
Q ss_pred CccCCceEEEEecCCC
Q 003524 292 SDIAGKRIKLEPSRPG 307 (813)
Q Consensus 292 ~~i~Gr~I~V~~ak~~ 307 (813)
..|.-+-|.|-.+...
T Consensus 167 e~iGhRYIEvF~Ss~~ 182 (510)
T KOG4211|consen 167 ENIGHRYIEVFRSSRA 182 (510)
T ss_pred HhhccceEEeehhHHH
Confidence 7888888888766443
No 62
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.22 E-value=9e-11 Score=121.77 Aligned_cols=119 Identities=27% Similarity=0.447 Sum_probs=101.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE-----eCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecC-
Q 003524 147 SRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI- 220 (813)
Q Consensus 147 srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~- 220 (813)
.++|||+|||.++++++|+++|.+||.|..+. .+++++|||||.|.+.++|..|+..+++..|.|++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999997776 367899999999999999999999999999999999999954
Q ss_pred ---CCCCCC----------------CCcCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEeC
Q 003524 221 ---PKDNPS----------------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET 265 (813)
Q Consensus 221 ---pk~~~~----------------~~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri~ 265 (813)
+..... ........+++.+++..++..++...|..+|.+..+.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeecc
Confidence 222111 011223589999999999999999999999999777653
No 63
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.19 E-value=2.3e-10 Score=126.92 Aligned_cols=228 Identities=14% Similarity=0.192 Sum_probs=154.4
Q ss_pred CccccccCCCCCCchhhHHhhcCCCceeeeccCCCCCcccEEEEEeCChhhhccc---CCcccCCC--------------
Q 003524 70 DDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEPQESLSMSMSKISISDSASGNGL---LHYSVPNG-------------- 132 (813)
Q Consensus 70 del~l~~Lp~s~gEiel~~lF~~~G~v~l~~D~~t~~s~G~afV~f~d~e~A~~~---~~~~~~n~-------------- 132 (813)
-.+-|++|||+|++.|+.++|++++--.++.-..+++..|-|||+|.+.+.+... ....+...
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~ 90 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCGIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEADW 90 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCceeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCccccc
Confidence 4567899999999999999999998655666667899999999999987765421 11111111
Q ss_pred CCccCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEE-E----EeCCCcceEEEEEEccHHHHHHHHHHhcCC
Q 003524 133 AGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRT-L----YTACKHRGFVMISYYDIRAARTAMRALQNK 207 (813)
Q Consensus 133 ~~~v~g~~~~~e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~-v----~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~ 207 (813)
..+..+ +........|-+++||+.+|++||.++|+-.--|.. | ...++..|-|||+|.+.+.|++|+.. +..
T Consensus 91 ~~~~~g--~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre 167 (510)
T KOG4211|consen 91 VMRPGG--PNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRE 167 (510)
T ss_pred cccCCC--CCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHH
Confidence 111111 111134568999999999999999999996543332 1 13567888999999999999999984 555
Q ss_pred ccccceeeeeec-----------------------CCCCCCC---------------C----------------------
Q 003524 208 PLRRRKLDIHFS-----------------------IPKDNPS---------------D---------------------- 227 (813)
Q Consensus 208 ~l~gr~L~V~~a-----------------------~pk~~~~---------------~---------------------- 227 (813)
.|..+-|.|-.+ .+..... .
T Consensus 168 ~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~ 247 (510)
T KOG4211|consen 168 NIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGN 247 (510)
T ss_pred hhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccc
Confidence 555444443211 0000000 0
Q ss_pred -------Cc----C-----------------C-cceeeeeccCCCCCHHHHHHHhcccCCe-EEE--EeCCCCccEEEEE
Q 003524 228 -------KD----L-----------------N-QGTLVVFNLDPSVSNEDLRQIFGAYGEV-KEI--RETPHKRHHKFIE 275 (813)
Q Consensus 228 -------~~----~-----------------~-~~tLfV~NLp~~vteedL~~lFs~fG~I-~~i--ri~~~srG~aFVe 275 (813)
++ . . ...+..++||...++.++..+|+..-.+ ..| ..+++..|-|+|+
T Consensus 248 ~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~~v~i~ig~dGr~TGEAdve 327 (510)
T KOG4211|consen 248 FGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPYRVHIEIGPDGRATGEADVE 327 (510)
T ss_pred ccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCceeEEEEeCCCCccCCcceee
Confidence 00 0 0 0257789999999999999999976443 223 3366778899999
Q ss_pred EcCHHHHHHHHHHhCCCccCCceEEE
Q 003524 276 FYDVRAAEAALKSLNRSDIAGKRIKL 301 (813)
Q Consensus 276 F~d~e~A~~Ai~~LnG~~i~Gr~I~V 301 (813)
|.+.++|..|+- -++..+..+-|.+
T Consensus 328 F~t~edav~Ams-kd~anm~hrYVEl 352 (510)
T KOG4211|consen 328 FATGEDAVGAMG-KDGANMGHRYVEL 352 (510)
T ss_pred cccchhhHhhhc-cCCcccCcceeee
Confidence 999999999986 3555555555444
No 64
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.19 E-value=1.6e-10 Score=124.05 Aligned_cols=235 Identities=14% Similarity=0.172 Sum_probs=153.9
Q ss_pred cccccCCCCCCchhhHHhhcC----CCceeeeccCCCCCcccEEEEEeCChhhhc---ccCCcccCCCCC----------
Q 003524 72 FDLRGLPSSLEDLEDYDIFGS----GGGMELEGEPQESLSMSMSKISISDSASGN---GLLHYSVPNGAG---------- 134 (813)
Q Consensus 72 l~l~~Lp~s~gEiel~~lF~~----~G~v~l~~D~~t~~s~G~afV~f~d~e~A~---~~~~~~~~n~~~---------- 134 (813)
+-.|+||++-.+.++..+|.- .|++.|+- ...++-.|.+.|.|.|.+.-. +-....+...-+
T Consensus 63 vRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG-~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ge~f 141 (508)
T KOG1365|consen 63 VRARGLPWQSSDQDIARFFKGLNIANGGRALCL-NAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATGEEF 141 (508)
T ss_pred EEecCCCCCcccCCHHHHHhhhhccccceeeee-hhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCchhh
Confidence 446899999999988777764 34444543 345677799999999866332 111111111100
Q ss_pred -ccCCC------CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhc-----C--CEEEEE-eCCCcceEEEEEEccHHHHHH
Q 003524 135 -TVAGE------HPYGEHPSRTLFVRNINSNVEDSELRALFEQY-----G--DIRTLY-TACKHRGFVMISYYDIRAART 199 (813)
Q Consensus 135 -~v~g~------~~~~e~~srtLfVgNLP~~vTeedL~~lFs~f-----G--~I~~v~-~~~ksrG~AFV~F~d~e~A~~ 199 (813)
++.+. ........-.|-+++||+++++.|+.++|.+- | .|.-|+ ..++..|-|||.|..+++|+.
T Consensus 142 ~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~ 221 (508)
T KOG1365|consen 142 LKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQF 221 (508)
T ss_pred eEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHH
Confidence 01100 00111123356679999999999999999622 2 233343 378899999999999999999
Q ss_pred HHHHhcCCccccceeeeeecC--------------C--------C-----CCCCCCcCCcceeeeeccCCCCCHHHHHHH
Q 003524 200 AMRALQNKPLRRRKLDIHFSI--------------P--------K-----DNPSDKDLNQGTLVVFNLDPSVSNEDLRQI 252 (813)
Q Consensus 200 Ai~~Lng~~l~gr~L~V~~a~--------------p--------k-----~~~~~~~~~~~tLfV~NLp~~vteedL~~l 252 (813)
|+.+ +...|+.|-|.+-.+. + - ...........+|.+++||++.+.|+|.++
T Consensus 222 aL~k-hrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~F 300 (508)
T KOG1365|consen 222 ALRK-HRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDF 300 (508)
T ss_pred HHHH-HHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHH
Confidence 9985 4444444333321110 0 0 000111223568999999999999999999
Q ss_pred hcccCCe-EE--EEe----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003524 253 FGAYGEV-KE--IRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 308 (813)
Q Consensus 253 Fs~fG~I-~~--iri----~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak~~~ 308 (813)
|..|-.- +. |.+ .++..|-|||+|.+.++|..|....+.+...++.|.|-.+.-.+
T Consensus 301 lgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ee 363 (508)
T KOG1365|consen 301 LGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEE 363 (508)
T ss_pred HHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHH
Confidence 9988642 22 322 46678899999999999999999888888888999887765443
No 65
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=1.3e-10 Score=104.58 Aligned_cols=82 Identities=23% Similarity=0.390 Sum_probs=74.7
Q ss_pred CcceeeeeccCCCCCHHHHHHHhcccCCeEEEEe--CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003524 231 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 308 (813)
Q Consensus 231 ~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri--~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak~~~ 308 (813)
-.+.|||+|||.++|.|+..++|.+||+|..||+ +...+|.|||.|+|..+|.+|++.|+|..+.++.+.|-|..+..
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 3568999999999999999999999999999998 55668999999999999999999999999999999999998876
Q ss_pred ccch
Q 003524 309 ARRN 312 (813)
Q Consensus 309 ~r~~ 312 (813)
..+.
T Consensus 97 ~~~~ 100 (124)
T KOG0114|consen 97 AFKL 100 (124)
T ss_pred HHHH
Confidence 5443
No 66
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=5.6e-11 Score=125.82 Aligned_cols=99 Identities=18% Similarity=0.295 Sum_probs=79.8
Q ss_pred cCCccccceeeeeecCCCCCCCCCcCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEe---CCCCccEEEEEEcCHHH
Q 003524 205 QNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRA 281 (813)
Q Consensus 205 ng~~l~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri---~~~srG~aFVeF~d~e~ 281 (813)
++-...|..+.+.-+.. +......+.|+|+|||....+-||+.+|++||+|.+|.| ...+|||+||+|++.+|
T Consensus 73 ~~~~t~g~~~~~~~st~----s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~d 148 (376)
T KOG0125|consen 73 NGAPTDGQPIQTQPSTN----SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPAD 148 (376)
T ss_pred CCCCCCCCccccCCCCc----CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhh
Confidence 44445555555443221 122234578999999999999999999999999999976 34579999999999999
Q ss_pred HHHHHHHhCCCccCCceEEEEecCCC
Q 003524 282 AEAALKSLNRSDIAGKRIKLEPSRPG 307 (813)
Q Consensus 282 A~~Ai~~LnG~~i~Gr~I~V~~ak~~ 307 (813)
|++|.++|||..|.||+|.|..+..+
T Consensus 149 adRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 149 ADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred HHHHHHHhhcceeeceEEEEeccchh
Confidence 99999999999999999999988764
No 67
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=8.7e-11 Score=120.21 Aligned_cols=77 Identities=25% Similarity=0.428 Sum_probs=72.7
Q ss_pred CcceeeeeccCCCCCHHHHHHHhcccCCeEEEE-----eCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003524 231 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 305 (813)
Q Consensus 231 ~~~tLfV~NLp~~vteedL~~lFs~fG~I~~ir-----i~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak 305 (813)
...+|.|.||+.++++++|+++|.+||.|..|. .++.+||||||.|.++++|++||+.|||.-++.-.|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 456899999999999999999999999999885 488899999999999999999999999999999999999999
Q ss_pred CC
Q 003524 306 PG 307 (813)
Q Consensus 306 ~~ 307 (813)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 68
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=1.9e-10 Score=117.83 Aligned_cols=78 Identities=22% Similarity=0.434 Sum_probs=74.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE-----eCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeec
Q 003524 145 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 219 (813)
Q Consensus 145 ~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 219 (813)
.+..+|-|.||+.+++|++|++||.+||.|..|+ .++.+||||||.|.+.++|++||+.|+|.-+..--|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 4678999999999999999999999999999987 58999999999999999999999999999999999999999
Q ss_pred CCC
Q 003524 220 IPK 222 (813)
Q Consensus 220 ~pk 222 (813)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 985
No 69
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.11 E-value=2.1e-10 Score=120.53 Aligned_cols=74 Identities=20% Similarity=0.413 Sum_probs=67.9
Q ss_pred cceeeeeccCCCCCHHHHHHHhcccCCeEEEEeCC--CCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003524 232 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP--HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 306 (813)
Q Consensus 232 ~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri~~--~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak~ 306 (813)
.++|||+||++.+++++|+++|+.||+|++|++.. ..+|||||+|.+.++|+.|+. |||..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 46899999999999999999999999999998743 357999999999999999996 999999999999999764
No 70
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=1.2e-10 Score=108.43 Aligned_cols=75 Identities=27% Similarity=0.494 Sum_probs=69.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEe-----CCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeec
Q 003524 145 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 219 (813)
Q Consensus 145 ~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 219 (813)
..++||||+||+..++|++|.+||+++|+|+.|.+ +....|||||+|.+.++|+.|++.++|..+..++|.|.|-
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 46899999999999999999999999999999873 5567899999999999999999999999999999999875
No 71
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.10 E-value=8.8e-11 Score=131.98 Aligned_cols=163 Identities=28% Similarity=0.415 Sum_probs=131.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecCCC
Q 003524 143 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 222 (813)
Q Consensus 143 ~e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 222 (813)
...+.++|+|-|||..|++++|+.+|+.||+|+.|+.+...+|.+||+|+|.++|++|+++|++..+.|+.|+.......
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~ 150 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARR 150 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcccc
Confidence 35678999999999999999999999999999999988999999999999999999999999999999998882221100
Q ss_pred C------------------CCCCCcCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEeCCCCccEEEEEEcCHHHHHH
Q 003524 223 D------------------NPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEA 284 (813)
Q Consensus 223 ~------------------~~~~~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri~~~srG~aFVeF~d~e~A~~ 284 (813)
. ......-....+++- |++..+..-++.+++.+|.+.. +.++..+..-|++|.+..++..
T Consensus 151 ~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~hq~~~~~~~~~s~a~ 228 (549)
T KOG4660|consen 151 AMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RETPLLNHQRFVEFADNRSYAF 228 (549)
T ss_pred cchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-ccccchhhhhhhhhccccchhh
Confidence 0 000111123355554 9999999888999999999988 8888777789999999999977
Q ss_pred HHHHhCCCccCCceEEEEecCCCc
Q 003524 285 ALKSLNRSDIAGKRIKLEPSRPGG 308 (813)
Q Consensus 285 Ai~~LnG~~i~Gr~I~V~~ak~~~ 308 (813)
+...+ |..+.++...+.++.+.+
T Consensus 229 ~~~~~-G~~~s~~~~v~t~S~~~g 251 (549)
T KOG4660|consen 229 SEPRG-GFLISNSSGVITFSGPGG 251 (549)
T ss_pred cccCC-ceecCCCCceEEecCCCc
Confidence 77644 777778887788887744
No 72
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=4.3e-10 Score=101.30 Aligned_cols=80 Identities=29% Similarity=0.490 Sum_probs=73.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEe--CCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecCC
Q 003524 144 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 221 (813)
Q Consensus 144 e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~--~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 221 (813)
...++.|||+|||.++|.++..++|.+||.|+.|++ +...+|.|||.|++..+|++|++.|.|..+.++.|.|.|..+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 345789999999999999999999999999999994 567899999999999999999999999999999999999876
Q ss_pred CC
Q 003524 222 KD 223 (813)
Q Consensus 222 k~ 223 (813)
.+
T Consensus 95 ~~ 96 (124)
T KOG0114|consen 95 ED 96 (124)
T ss_pred HH
Confidence 53
No 73
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.09 E-value=3.8e-10 Score=118.67 Aligned_cols=75 Identities=19% Similarity=0.293 Sum_probs=68.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEe--CCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecCCC
Q 003524 147 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 222 (813)
Q Consensus 147 srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~--~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 222 (813)
.++|||+|||+.+++++|+++|+.||+|+.|.+ .+..+|||||+|.+.++|+.|+. |+|..|.|+.|.|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 589999999999999999999999999999984 33468999999999999999996 9999999999999987643
No 74
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=2.7e-10 Score=120.69 Aligned_cols=79 Identities=23% Similarity=0.400 Sum_probs=72.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEe---CCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecCC
Q 003524 145 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 221 (813)
Q Consensus 145 ~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~---~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 221 (813)
...++|+|.|||+..-|-||+.+|++||.|.+|.+ ..-+|||+||+|++.+||++|-++|||..+.||+|.|..+.+
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 34579999999999999999999999999998873 566999999999999999999999999999999999999876
Q ss_pred CC
Q 003524 222 KD 223 (813)
Q Consensus 222 k~ 223 (813)
+-
T Consensus 174 rV 175 (376)
T KOG0125|consen 174 RV 175 (376)
T ss_pred hh
Confidence 53
No 75
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.08 E-value=3e-10 Score=96.33 Aligned_cols=66 Identities=35% Similarity=0.644 Sum_probs=58.9
Q ss_pred eeeeccCCCCCHHHHHHHhcccCCeEEEEeCCC----CccEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 003524 235 LVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH----KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 300 (813)
Q Consensus 235 LfV~NLp~~vteedL~~lFs~fG~I~~iri~~~----srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~ 300 (813)
|||+|||+.+++++|+++|+.||.|..+++... .+++|||+|.+.++|.+|++.++|..+.|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999986433 478999999999999999999999999999885
No 76
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.08 E-value=1.4e-09 Score=116.78 Aligned_cols=171 Identities=20% Similarity=0.300 Sum_probs=134.0
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEeCCCcceEEEEEEccHHHHHHHHHHh--cCCccccceeee
Q 003524 139 EHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRAL--QNKPLRRRKLDI 216 (813)
Q Consensus 139 ~~~~~e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~L--ng~~l~gr~L~V 216 (813)
..+....++-.|.|++|-..++|.+|.+.++.||.|..+.. ...+..|.|+|+|++.|+.++..- +...+.|+.--+
T Consensus 23 ~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~-~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~ 101 (494)
T KOG1456|consen 23 ADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTC-MPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALF 101 (494)
T ss_pred CCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEe-ccccceeeeeeccccchhhheehhccCcccccCchhhc
Confidence 33445567889999999999999999999999999998864 345668999999999999998732 335567777777
Q ss_pred eecCCCCCCCCC---cCCcceee--eeccCCCCCHHHHHHHhcccCCeEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCC
Q 003524 217 HFSIPKDNPSDK---DLNQGTLV--VFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR 291 (813)
Q Consensus 217 ~~a~pk~~~~~~---~~~~~tLf--V~NLp~~vteedL~~lFs~fG~I~~iri~~~srG~aFVeF~d~e~A~~Ai~~LnG 291 (813)
.|+..+...... ...++.|. |-|--+.+|.+-|.+++.+.|+|..|.+..+..-.|.|||++.+.|++|..+|||
T Consensus 102 NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNG 181 (494)
T KOG1456|consen 102 NYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNG 181 (494)
T ss_pred ccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhccc
Confidence 777443322111 11223343 4455567899999999999999999988777655799999999999999999999
Q ss_pred CccC-C-ceEEEEecCCCccc
Q 003524 292 SDIA-G-KRIKLEPSRPGGAR 310 (813)
Q Consensus 292 ~~i~-G-r~I~V~~ak~~~~r 310 (813)
..|. | ++|+|+||+|..-+
T Consensus 182 ADIYsGCCTLKIeyAkP~rln 202 (494)
T KOG1456|consen 182 ADIYSGCCTLKIEYAKPTRLN 202 (494)
T ss_pred ccccccceeEEEEecCcceee
Confidence 9886 4 79999999997543
No 77
>smart00362 RRM_2 RNA recognition motif.
Probab=99.08 E-value=4.6e-10 Score=93.04 Aligned_cols=69 Identities=32% Similarity=0.643 Sum_probs=63.1
Q ss_pred eeeeeccCCCCCHHHHHHHhcccCCeEEEEeCCC---CccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 003524 234 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH---KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 302 (813)
Q Consensus 234 tLfV~NLp~~vteedL~~lFs~fG~I~~iri~~~---srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~ 302 (813)
+|+|+|||..+++++|+++|.+||.|..+++... .+++|||+|.+.++|++|++.+++..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999999999876433 47999999999999999999999999999999874
No 78
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.06 E-value=5.1e-10 Score=91.25 Aligned_cols=56 Identities=34% Similarity=0.594 Sum_probs=51.7
Q ss_pred HHHHhcccCCeEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003524 249 LRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 304 (813)
Q Consensus 249 L~~lFs~fG~I~~iri~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~a 304 (813)
|+++|++||+|+.+.+..+.+++|||+|.+.++|.+|++.|||..+.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999987666799999999999999999999999999999999986
No 79
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.06 E-value=4.1e-10 Score=95.47 Aligned_cols=66 Identities=23% Similarity=0.548 Sum_probs=58.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCEEEEEe----CCCcceEEEEEEccHHHHHHHHHHhcCCccccceee
Q 003524 150 LFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 215 (813)
Q Consensus 150 LfVgNLP~~vTeedL~~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~ 215 (813)
|||+|||+++++++|+++|+.||.|..+.. .++.+|+|||+|.+.++|++|++.+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999998873 245789999999999999999999988999999874
No 80
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.02 E-value=3.7e-10 Score=111.11 Aligned_cols=78 Identities=29% Similarity=0.456 Sum_probs=70.8
Q ss_pred CcceeeeeccCCCCCHHHHHHHhcccCCeEEEEeCC--CCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003524 231 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP--HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 308 (813)
Q Consensus 231 ~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri~~--~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak~~~ 308 (813)
+.++|||+|||.++.+.||+++|.+||.|..|.+.. ....||||+|+|..+|+.||..-+|..++|++|+|+|++...
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr 84 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGR 84 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCC
Confidence 467899999999999999999999999999997633 335799999999999999999999999999999999987654
No 81
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=5.2e-10 Score=104.34 Aligned_cols=76 Identities=21% Similarity=0.345 Sum_probs=69.5
Q ss_pred CcceeeeeccCCCCCHHHHHHHhcccCCeEEEE-----eCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003524 231 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 305 (813)
Q Consensus 231 ~~~tLfV~NLp~~vteedL~~lFs~fG~I~~ir-----i~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak 305 (813)
...||||+||...++||+|.++|++.|+|+.|. .+....||+||+|...++|+.|++-++|+.+..+.|+|.|.-
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 457999999999999999999999999999984 355668999999999999999999999999999999999864
Q ss_pred C
Q 003524 306 P 306 (813)
Q Consensus 306 ~ 306 (813)
-
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 4
No 82
>PLN03213 repressor of silencing 3; Provisional
Probab=99.00 E-value=7.9e-10 Score=121.76 Aligned_cols=77 Identities=25% Similarity=0.352 Sum_probs=69.1
Q ss_pred CcceeeeeccCCCCCHHHHHHHhcccCCeEEEEeCC-CCccEEEEEEcCH--HHHHHHHHHhCCCccCCceEEEEecCCC
Q 003524 231 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP-HKRHHKFIEFYDV--RAAEAALKSLNRSDIAGKRIKLEPSRPG 307 (813)
Q Consensus 231 ~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri~~-~srG~aFVeF~d~--e~A~~Ai~~LnG~~i~Gr~I~V~~ak~~ 307 (813)
...+|||+||.+.+++++|+.+|..||.|..|.+.. ..||||||+|.+. .++.+||..|||..+.|+.|+|.-|++.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 446899999999999999999999999999987631 1289999999987 7899999999999999999999999875
No 83
>smart00362 RRM_2 RNA recognition motif.
Probab=98.99 E-value=1.6e-09 Score=89.81 Aligned_cols=69 Identities=30% Similarity=0.580 Sum_probs=62.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCEEEEEeC---CCcceEEEEEEccHHHHHHHHHHhcCCccccceeeee
Q 003524 149 TLFVRNINSNVEDSELRALFEQYGDIRTLYTA---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 217 (813)
Q Consensus 149 tLfVgNLP~~vTeedL~~lFs~fG~I~~v~~~---~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 217 (813)
+|||+|||..+++++|+++|++||+|..+.+. +..+|+|||+|.+.++|++|++.+++..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999988743 3457999999999999999999999999999988763
No 84
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.99 E-value=8.6e-10 Score=112.70 Aligned_cols=76 Identities=22% Similarity=0.421 Sum_probs=66.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE-----eCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeee
Q 003524 144 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 218 (813)
Q Consensus 144 e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 218 (813)
+..-++|||++|++.+..++|+++|++||+|++.. .++++|||+||+|+|.++|.+|++. -.-.|+||+-.+..
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 34457999999999999999999999999998876 3789999999999999999999984 45668888887776
Q ss_pred cC
Q 003524 219 SI 220 (813)
Q Consensus 219 a~ 220 (813)
+.
T Consensus 88 A~ 89 (247)
T KOG0149|consen 88 AS 89 (247)
T ss_pred hh
Confidence 64
No 85
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.98 E-value=4.6e-10 Score=112.28 Aligned_cols=76 Identities=33% Similarity=0.543 Sum_probs=70.5
Q ss_pred cceeeeeccCCCCCHHHHHHHhcccCCeEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003524 232 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 306 (813)
Q Consensus 232 ~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak~ 306 (813)
..+|.|-||-+-++.++|+.+|++||.|-+|.| +..++|||||.|.+..+|+.|+++|+|..++|+.|+|++|+=
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 468999999999999999999999999999965 677899999999999999999999999999999999998864
Q ss_pred C
Q 003524 307 G 307 (813)
Q Consensus 307 ~ 307 (813)
+
T Consensus 93 g 93 (256)
T KOG4207|consen 93 G 93 (256)
T ss_pred C
Confidence 3
No 86
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=2.2e-09 Score=112.78 Aligned_cols=78 Identities=27% Similarity=0.491 Sum_probs=73.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE-----eCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeee
Q 003524 143 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 217 (813)
Q Consensus 143 ~e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 217 (813)
...|-+||||.-|+.+++|.+|+..|+.||+|+.|. ++++++|||||+|+++.+...|.+..+|..|.|+.|.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 346889999999999999999999999999999986 689999999999999999999999999999999999998
Q ss_pred ecC
Q 003524 218 FSI 220 (813)
Q Consensus 218 ~a~ 220 (813)
+-.
T Consensus 177 vER 179 (335)
T KOG0113|consen 177 VER 179 (335)
T ss_pred ecc
Confidence 754
No 87
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.95 E-value=1.2e-09 Score=109.24 Aligned_cols=80 Identities=28% Similarity=0.504 Sum_probs=73.6
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE-----eCCCcceEEEEEEccHHHHHHHHHHhcCCccccceee
Q 003524 141 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 215 (813)
Q Consensus 141 ~~~e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~ 215 (813)
+.......+|-|-||.+.++.++|+.+|++||.|-+|+ .+..++|||||.|.+..+|+.|+++|+|..|.|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 33445678999999999999999999999999999998 4788999999999999999999999999999999999
Q ss_pred eeecC
Q 003524 216 IHFSI 220 (813)
Q Consensus 216 V~~a~ 220 (813)
|++|.
T Consensus 87 Vq~ar 91 (256)
T KOG4207|consen 87 VQMAR 91 (256)
T ss_pred ehhhh
Confidence 99875
No 88
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=2.5e-09 Score=112.32 Aligned_cols=91 Identities=31% Similarity=0.418 Sum_probs=78.8
Q ss_pred ecCCCCCCCCCcCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEE-----eCCCCccEEEEEEcCHHHHHHHHHHhCCC
Q 003524 218 FSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRS 292 (813)
Q Consensus 218 ~a~pk~~~~~~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~ir-----i~~~srG~aFVeF~d~e~A~~Ai~~LnG~ 292 (813)
...|..++....-.-+||||.-|+++++|.+|+..|+.||.|+.|+ ++++++|||||+|.+..+...|.+..+|.
T Consensus 87 ~wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~ 166 (335)
T KOG0113|consen 87 LWDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGI 166 (335)
T ss_pred hcCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCc
Confidence 3445544444444568999999999999999999999999999996 48899999999999999999999999999
Q ss_pred ccCCceEEEEecCCCc
Q 003524 293 DIAGKRIKLEPSRPGG 308 (813)
Q Consensus 293 ~i~Gr~I~V~~ak~~~ 308 (813)
+|+|+.|.|.+-+-..
T Consensus 167 ~Idgrri~VDvERgRT 182 (335)
T KOG0113|consen 167 KIDGRRILVDVERGRT 182 (335)
T ss_pred eecCcEEEEEeccccc
Confidence 9999999999976544
No 89
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.94 E-value=4.1e-09 Score=87.74 Aligned_cols=70 Identities=39% Similarity=0.672 Sum_probs=64.1
Q ss_pred eeeeeccCCCCCHHHHHHHhcccCCeEEEEeCCC----CccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003524 234 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH----KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 303 (813)
Q Consensus 234 tLfV~NLp~~vteedL~~lFs~fG~I~~iri~~~----srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ 303 (813)
+|+|+|||..+++++|+++|+.||.|..+.+... .+++|||+|.+.++|..|++.+++..+.|++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999877443 378999999999999999999999999999999875
No 90
>smart00360 RRM RNA recognition motif.
Probab=98.92 E-value=3.3e-09 Score=87.42 Aligned_cols=66 Identities=33% Similarity=0.649 Sum_probs=59.7
Q ss_pred eeccCCCCCHHHHHHHhcccCCeEEEEeC-----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 003524 237 VFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 302 (813)
Q Consensus 237 V~NLp~~vteedL~~lFs~fG~I~~iri~-----~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~ 302 (813)
|+|||..+++++|+++|++||.|..+++. +..+++|||+|.+.++|.+|++.|++..+.|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999998763 3346899999999999999999999999999999874
No 91
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.92 E-value=3.7e-09 Score=109.70 Aligned_cols=73 Identities=22% Similarity=0.322 Sum_probs=66.3
Q ss_pred cceeeeeccCCCCCHHHHHHHhcccCCeEEEEeC--CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003524 232 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET--PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 305 (813)
Q Consensus 232 ~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri~--~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak 305 (813)
..+|+|+||++.+|+++|+++|+.||+|.+|++. +..+++|||+|.++++|+.|+. |+|..|.+++|.|....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 3589999999999999999999999999999874 3456899999999999999995 99999999999998764
No 92
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=8.8e-10 Score=110.99 Aligned_cols=81 Identities=27% Similarity=0.505 Sum_probs=74.9
Q ss_pred CcceeeeeccCCCCCHHHHHHHhcccCCeEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003524 231 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 305 (813)
Q Consensus 231 ~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak 305 (813)
..++|||++|..++++.-|...|-+||.|++|.+ +.+.||||||+|.-.|+|..||..||+.++.||.|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 4579999999999999999999999999999975 56789999999999999999999999999999999999999
Q ss_pred CCcccc
Q 003524 306 PGGARR 311 (813)
Q Consensus 306 ~~~~r~ 311 (813)
|...+.
T Consensus 89 P~kike 94 (298)
T KOG0111|consen 89 PEKIKE 94 (298)
T ss_pred CccccC
Confidence 976543
No 93
>PLN03213 repressor of silencing 3; Provisional
Probab=98.90 E-value=3.6e-09 Score=116.68 Aligned_cols=117 Identities=14% Similarity=0.179 Sum_probs=85.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEe-CCCcceEEEEEEccH--HHHHHHHHHhcCCccccceeeeeecCC
Q 003524 145 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-ACKHRGFVMISYYDI--RAARTAMRALQNKPLRRRKLDIHFSIP 221 (813)
Q Consensus 145 ~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~-~~ksrG~AFV~F~d~--e~A~~Ai~~Lng~~l~gr~L~V~~a~p 221 (813)
....+|||+||++++++++|+.+|..||.|..|.+ ....||||||+|.+. .++.+||..|+|..+.|+.|+|..++|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 34579999999999999999999999999999873 223399999999987 789999999999999999999998876
Q ss_pred CCCC-------CCCcCCcceeeeeccCCC-CCHHHHHHHhcccCCeEEEEe
Q 003524 222 KDNP-------SDKDLNQGTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRE 264 (813)
Q Consensus 222 k~~~-------~~~~~~~~tLfV~NLp~~-vteedL~~lFs~fG~I~~iri 264 (813)
.-.. ........++- ++.. .....|+-+|-+.++|+.+-+
T Consensus 88 ~YLeRLkrEReea~s~~~~~~k---l~k~~~e~~qLnifFPrLrKvKslPf 135 (759)
T PLN03213 88 HYLARLKREWEAASSTSDNTIK---APSDSPPATHLNIFFPRLRKVKAMPL 135 (759)
T ss_pred HHHHHHHHHHHHhhcccccccc---ccccCCccceeeEecccccccccccc
Confidence 4110 00000111111 1221 234456677777777776633
No 94
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.90 E-value=2e-09 Score=110.01 Aligned_cols=78 Identities=27% Similarity=0.340 Sum_probs=68.4
Q ss_pred CCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003524 230 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 304 (813)
Q Consensus 230 ~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~a 304 (813)
..-++|||++|+++++.|+|++.|++||+|++..+ ++++|||+||+|.|.++|.+|++.- .-.|+||+..|.+|
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchh
Confidence 34568999999999999999999999999998743 7889999999999999999999843 35889999999888
Q ss_pred CCCc
Q 003524 305 RPGG 308 (813)
Q Consensus 305 k~~~ 308 (813)
.-++
T Consensus 89 ~lg~ 92 (247)
T KOG0149|consen 89 SLGG 92 (247)
T ss_pred hhcC
Confidence 7654
No 95
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.1e-09 Score=110.37 Aligned_cols=81 Identities=26% Similarity=0.509 Sum_probs=75.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE-----eCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeec
Q 003524 145 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 219 (813)
Q Consensus 145 ~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 219 (813)
...|+|||++|..+++|.-|...|-+||+|..|. .+.++||||||+|.-.|+|..||..||+.+|.||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 3568999999999999999999999999999997 47899999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 003524 220 IPKDNP 225 (813)
Q Consensus 220 ~pk~~~ 225 (813)
.|....
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 987543
No 96
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.90 E-value=5.2e-09 Score=108.62 Aligned_cols=73 Identities=16% Similarity=0.189 Sum_probs=66.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEe--CCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecC
Q 003524 147 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 220 (813)
Q Consensus 147 srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~--~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 220 (813)
..+|||+||++.+|+++|+++|+.||+|..|++ .++.+++|||+|+++++|+.|+. |+|..|.+++|.|....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 479999999999999999999999999999984 55677899999999999999996 99999999999998654
No 97
>smart00360 RRM RNA recognition motif.
Probab=98.87 E-value=6.2e-09 Score=85.78 Aligned_cols=66 Identities=32% Similarity=0.584 Sum_probs=59.7
Q ss_pred EcCCCCCCCHHHHHHHHhhcCCEEEEEe-----CCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeee
Q 003524 152 VRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 217 (813)
Q Consensus 152 VgNLP~~vTeedL~~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 217 (813)
|+|||..+++++|+++|++||.|..+.+ +++++|+|||+|.+.++|.+|++.+++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6799999999999999999999998873 35568999999999999999999999999999988763
No 98
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.87 E-value=1e-08 Score=85.37 Aligned_cols=70 Identities=34% Similarity=0.652 Sum_probs=63.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCEEEEEeCC----CcceEEEEEEccHHHHHHHHHHhcCCccccceeeeee
Q 003524 149 TLFVRNINSNVEDSELRALFEQYGDIRTLYTAC----KHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 218 (813)
Q Consensus 149 tLfVgNLP~~vTeedL~~lFs~fG~I~~v~~~~----ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 218 (813)
+|+|+|||..+++++|+++|+.||.|..+.+.. +.+|+|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999987432 3489999999999999999999999999999998864
No 99
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.86 E-value=3.4e-09 Score=99.64 Aligned_cols=79 Identities=22% Similarity=0.394 Sum_probs=71.8
Q ss_pred cCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003524 229 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 303 (813)
Q Consensus 229 ~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ 303 (813)
......|||.++....++++|.+.|..||+|+.|.+ ++-.+|||.|+|++.++|++|+.+|||..+-|..|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 345568999999999999999999999999999965 666799999999999999999999999999999999999
Q ss_pred cCCC
Q 003524 304 SRPG 307 (813)
Q Consensus 304 ak~~ 307 (813)
+-.+
T Consensus 149 ~Fv~ 152 (170)
T KOG0130|consen 149 CFVK 152 (170)
T ss_pred EEec
Confidence 7543
No 100
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.86 E-value=5.9e-09 Score=84.93 Aligned_cols=56 Identities=23% Similarity=0.591 Sum_probs=50.7
Q ss_pred HHHHHhhcCCEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeec
Q 003524 164 LRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 219 (813)
Q Consensus 164 L~~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 219 (813)
|+++|++||+|..+.+..+.+++|||+|.+.++|++|++.|+|..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999865555799999999999999999999999999999999985
No 101
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=4.3e-08 Score=109.89 Aligned_cols=142 Identities=18% Similarity=0.291 Sum_probs=105.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEe-------CCCcce---EEEEEEccHHHHHHHHHHhcCCccccce
Q 003524 144 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-------ACKHRG---FVMISYYDIRAARTAMRALQNKPLRRRK 213 (813)
Q Consensus 144 e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~-------~~ksrG---~AFV~F~d~e~A~~Ai~~Lng~~l~gr~ 213 (813)
..-+++|||++||++++|++|...|..||.+..-.. ....+| |+|+.|+++..++.-+.+... ....
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~ 332 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGN 332 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccc
Confidence 345789999999999999999999999998764321 122556 999999999998887765432 2222
Q ss_pred eeeeecCCCCC-------------------CCCCcCCcceeeeeccCCCCCHHHHHHHhc-ccCCeEEEEeC-----CCC
Q 003524 214 LDIHFSIPKDN-------------------PSDKDLNQGTLVVFNLDPSVSNEDLRQIFG-AYGEVKEIRET-----PHK 268 (813)
Q Consensus 214 L~V~~a~pk~~-------------------~~~~~~~~~tLfV~NLp~~vteedL~~lFs-~fG~I~~iri~-----~~s 268 (813)
+.++.+.+... ....--..+||||++||.-++-++|..+|+ -||.|..+-|+ +-.
T Consensus 333 ~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYP 412 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYP 412 (520)
T ss_pred eEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCC
Confidence 22222222111 011112357999999999999999999999 79999998653 335
Q ss_pred ccEEEEEEcCHHHHHHHHHH
Q 003524 269 RHHKFIEFYDVRAAEAALKS 288 (813)
Q Consensus 269 rG~aFVeF~d~e~A~~Ai~~ 288 (813)
+|-|-|.|.+..+=.+||.+
T Consensus 413 kGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 413 KGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCcceeeecccHHHHHHHhh
Confidence 88999999999999999973
No 102
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.82 E-value=1.1e-08 Score=106.03 Aligned_cols=75 Identities=36% Similarity=0.625 Sum_probs=70.1
Q ss_pred cceeeeeccCCCCCHHHHHHHhcccCCeEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003524 232 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 306 (813)
Q Consensus 232 ~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak~ 306 (813)
..+|||+|||.++++++|+++|.+||.|..+++ ++..+|+|||+|.+.++|..|++.++|..+.|++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 589999999999999999999999999988754 567899999999999999999999999999999999999765
No 103
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.76 E-value=5.2e-09 Score=122.89 Aligned_cols=159 Identities=21% Similarity=0.373 Sum_probs=139.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEeC----CCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecC
Q 003524 145 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA----CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 220 (813)
Q Consensus 145 ~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~~----~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 220 (813)
..+++||++||+..+++.+|+..|..+|.|..|.+. +....||||.|.+...+-.|+..+.+..|..-.+++.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 467899999999999999999999999999998742 3345599999999999999999999999987788887776
Q ss_pred CCCCCCCCcCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCC--ce
Q 003524 221 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG--KR 298 (813)
Q Consensus 221 pk~~~~~~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~G--r~ 298 (813)
++ ....+.++|++|...+....|...|..||.|..|.+. +..-||+|.|.+...|+.|+..|-|..|+| ++
T Consensus 450 ~k------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~-hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r 522 (975)
T KOG0112|consen 450 PK------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR-HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRR 522 (975)
T ss_pred cc------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecc-cCCcceeeecccCccchhhHHHHhcCcCCCCCcc
Confidence 53 2345689999999999999999999999999999884 345699999999999999999999999987 88
Q ss_pred EEEEecCCCccc
Q 003524 299 IKLEPSRPGGAR 310 (813)
Q Consensus 299 I~V~~ak~~~~r 310 (813)
|.|.|+.+....
T Consensus 523 ~rvdla~~~~~~ 534 (975)
T KOG0112|consen 523 LRVDLASPPGAT 534 (975)
T ss_pred cccccccCCCCC
Confidence 999999887643
No 104
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.75 E-value=1.3e-09 Score=107.23 Aligned_cols=75 Identities=23% Similarity=0.396 Sum_probs=69.8
Q ss_pred CCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003524 230 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 304 (813)
Q Consensus 230 ~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~a 304 (813)
.+..-|||+|||+++||.||.-+|++||+|+.|.+ +++++||||++|+|.++...|+..|||..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 34578999999999999999999999999999954 8899999999999999999999999999999999999754
No 105
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.74 E-value=1.7e-08 Score=114.13 Aligned_cols=79 Identities=27% Similarity=0.389 Sum_probs=73.8
Q ss_pred ceeeeeccCCCCCHHHHHHHhcccCCeEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003524 233 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 307 (813)
Q Consensus 233 ~tLfV~NLp~~vteedL~~lFs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak~~ 307 (813)
..+||+|+|+++++++|..+|+..|.|.++++ +++.+||||++|.+.++|++|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999974 7888999999999999999999999999999999999999876
Q ss_pred cccc
Q 003524 308 GARR 311 (813)
Q Consensus 308 ~~r~ 311 (813)
..+.
T Consensus 99 ~~~~ 102 (435)
T KOG0108|consen 99 KNAE 102 (435)
T ss_pred chhH
Confidence 6543
No 106
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.71 E-value=1.9e-08 Score=113.73 Aligned_cols=76 Identities=24% Similarity=0.438 Sum_probs=71.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE-----eCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecCCC
Q 003524 148 RTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 222 (813)
Q Consensus 148 rtLfVgNLP~~vTeedL~~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 222 (813)
+.|||||||++++|++|..+|+..|.|.+++ .+++.+||||++|.+.++|++|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999987 58999999999999999999999999999999999999998644
Q ss_pred C
Q 003524 223 D 223 (813)
Q Consensus 223 ~ 223 (813)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 107
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=2.4e-09 Score=105.33 Aligned_cols=76 Identities=20% Similarity=0.432 Sum_probs=70.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE-----eCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeec
Q 003524 145 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 219 (813)
Q Consensus 145 ~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 219 (813)
.++.-|||+|||++.||.||..+|++||+|..|. .+|+++||||+.|+|.++...|+..|||..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 4578899999999999999999999999999986 48999999999999999999999999999999999999754
Q ss_pred C
Q 003524 220 I 220 (813)
Q Consensus 220 ~ 220 (813)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 3
No 108
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.68 E-value=3.7e-08 Score=114.18 Aligned_cols=77 Identities=30% Similarity=0.518 Sum_probs=71.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecCCCC
Q 003524 146 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 223 (813)
Q Consensus 146 ~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 223 (813)
.++||||++|+..++|.||+.+|+.||+|.+|.+ ...+|||||.+....+|.+|+.+|.+..+.++.|+|.|+.-+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~l-i~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIIL-IPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEee-ccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 3689999999999999999999999999999975 4589999999999999999999999999999999999997654
No 109
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.67 E-value=3.2e-08 Score=93.23 Aligned_cols=79 Identities=18% Similarity=0.466 Sum_probs=71.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE-----eCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeee
Q 003524 144 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 218 (813)
Q Consensus 144 e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 218 (813)
....-.|||.++-..++|++|.+.|..||+|+.+. .++-.+|||+|+|.+.++|++|+.++||..|.+.+|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 34456899999999999999999999999999987 4777899999999999999999999999999999999999
Q ss_pred cCCC
Q 003524 219 SIPK 222 (813)
Q Consensus 219 a~pk 222 (813)
+.-+
T Consensus 149 ~Fv~ 152 (170)
T KOG0130|consen 149 CFVK 152 (170)
T ss_pred EEec
Confidence 8543
No 110
>smart00361 RRM_1 RNA recognition motif.
Probab=98.67 E-value=5.2e-08 Score=83.36 Aligned_cols=57 Identities=33% Similarity=0.513 Sum_probs=50.5
Q ss_pred HHHHHHHhc----ccCCeEEEE---e---C--CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 003524 246 NEDLRQIFG----AYGEVKEIR---E---T--PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 302 (813)
Q Consensus 246 eedL~~lFs----~fG~I~~ir---i---~--~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~ 302 (813)
+++|+++|+ +||.|.+|. + + +.++|+|||+|.+.++|.+|++.|||+.+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999884 2 2 6679999999999999999999999999999999873
No 111
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.65 E-value=2.1e-07 Score=95.15 Aligned_cols=150 Identities=17% Similarity=0.238 Sum_probs=112.4
Q ss_pred ccccccCCCCCCchhhHH----hhcCCCceeeeccCCCCCcccEEEEEeCChhhhc----ccCCcccCCCCCccCCCC--
Q 003524 71 DFDLRGLPSSLEDLEDYD----IFGSGGGMELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEH-- 140 (813)
Q Consensus 71 el~l~~Lp~s~gEiel~~----lF~~~G~v~l~~D~~t~~s~G~afV~f~d~e~A~----~~~~~~~~n~~~~v~g~~-- 140 (813)
.+||.+|...+--.++.. +|+++|.+.-+.-..+.+.+|-|||.|.+.+.|. .+.++.+-++..++...+
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~ 90 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSD 90 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCc
Confidence 468888888877777755 9999998765555678899999999999866543 223333222211111000
Q ss_pred -------------------------------------------------CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhc
Q 003524 141 -------------------------------------------------PYGEHPSRTLFVRNINSNVEDSELRALFEQY 171 (813)
Q Consensus 141 -------------------------------------------------~~~e~~srtLfVgNLP~~vTeedL~~lFs~f 171 (813)
.....+...||+.|||..++.+.|..+|++|
T Consensus 91 sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf 170 (221)
T KOG4206|consen 91 SDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQF 170 (221)
T ss_pred cchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhC
Confidence 0113567899999999999999999999999
Q ss_pred CCEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcCCccc-cceeeeeecC
Q 003524 172 GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRKLDIHFSI 220 (813)
Q Consensus 172 G~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~-gr~L~V~~a~ 220 (813)
...+.++.-...++.|||+|.+...|..|...+++..|. ...+.|.++.
T Consensus 171 ~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 171 PGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred cccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 988888865556789999999999999999999998887 7778877763
No 112
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.63 E-value=6.2e-08 Score=110.38 Aligned_cols=165 Identities=19% Similarity=0.339 Sum_probs=132.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhc-----------C-CEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcCCccccc
Q 003524 145 HPSRTLFVRNINSNVEDSELRALFEQY-----------G-DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRR 212 (813)
Q Consensus 145 ~~srtLfVgNLP~~vTeedL~~lFs~f-----------G-~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr 212 (813)
...+.++|+++|..++++++..+|..- | .|..+.+ +..+.|||++|.+.++|..|+. +++..+.|.
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~-n~~~nfa~ie~~s~~~at~~~~-~~~~~f~g~ 250 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL-NLEKNFAFIEFRSISEATEAMA-LDGIIFEGR 250 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee-cccccceeEEecCCCchhhhhc-ccchhhCCC
Confidence 345789999999999999999999743 2 2566654 5678999999999999999998 788888888
Q ss_pred eeeeeecCCC-----C--------------CCCCCcCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEe-----CCCC
Q 003524 213 KLDIHFSIPK-----D--------------NPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHK 268 (813)
Q Consensus 213 ~L~V~~a~pk-----~--------------~~~~~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri-----~~~s 268 (813)
.+++.-.... . ...........++|++||..+++++++++...||.++..++ ++.+
T Consensus 251 ~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~s 330 (500)
T KOG0120|consen 251 PLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNS 330 (500)
T ss_pred CceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccc
Confidence 7766432110 0 00011123358999999999999999999999999887753 5678
Q ss_pred ccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcccc
Q 003524 269 RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARR 311 (813)
Q Consensus 269 rG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak~~~~r~ 311 (813)
+||||.+|.+......|+..|||..+++++|.|..|..+..+.
T Consensus 331 kg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~ 373 (500)
T KOG0120|consen 331 KGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNA 373 (500)
T ss_pred cceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhc
Confidence 9999999999999999999999999999999999998776443
No 113
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.62 E-value=6.8e-08 Score=112.07 Aligned_cols=80 Identities=29% Similarity=0.397 Sum_probs=74.9
Q ss_pred CcceeeeeccCCCCCHHHHHHHhcccCCeEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCccc
Q 003524 231 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGAR 310 (813)
Q Consensus 231 ~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak~~~~r 310 (813)
..+||||+.|+..+++.||.++|+.||+|.+|.+. ..++||||++..+.+|.+|+.+|+...+.++.|+|.|+..++-+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li-~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI-PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeec-cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcc
Confidence 45799999999999999999999999999999985 46799999999999999999999999999999999999988876
Q ss_pred c
Q 003524 311 R 311 (813)
Q Consensus 311 ~ 311 (813)
.
T Consensus 499 s 499 (894)
T KOG0132|consen 499 S 499 (894)
T ss_pred h
Confidence 5
No 114
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.52 E-value=1.1e-07 Score=98.38 Aligned_cols=80 Identities=21% Similarity=0.418 Sum_probs=74.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE-----eCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeec
Q 003524 145 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 219 (813)
Q Consensus 145 ~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 219 (813)
.+.|+|||-.||.+..+.||..+|-.||.|.+.+ .++.+|.|+||.|.++.+|+.||.+|||..|+-++|+|+..
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 4568999999999999999999999999999877 37889999999999999999999999999999999999998
Q ss_pred CCCCC
Q 003524 220 IPKDN 224 (813)
Q Consensus 220 ~pk~~ 224 (813)
+|++.
T Consensus 363 RPkda 367 (371)
T KOG0146|consen 363 RPKDA 367 (371)
T ss_pred Ccccc
Confidence 88764
No 115
>smart00361 RRM_1 RNA recognition motif.
Probab=98.51 E-value=2.4e-07 Score=79.24 Aligned_cols=56 Identities=20% Similarity=0.374 Sum_probs=50.2
Q ss_pred HHHHHHHHh----hcCCEEEEE---e---C--CCcceEEEEEEccHHHHHHHHHHhcCCccccceeee
Q 003524 161 DSELRALFE----QYGDIRTLY---T---A--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 216 (813)
Q Consensus 161 eedL~~lFs----~fG~I~~v~---~---~--~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V 216 (813)
+++|+++|+ +||.|.+|. + + ++++|||||+|.+.++|.+|++.|+|..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678899998 999999873 2 2 778999999999999999999999999999999876
No 116
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.47 E-value=3.6e-07 Score=98.14 Aligned_cols=89 Identities=25% Similarity=0.455 Sum_probs=73.6
Q ss_pred CCccCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEeCCCcceEEEEEEccHHHHHHHHHHh-cCCcccc
Q 003524 133 AGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRAL-QNKPLRR 211 (813)
Q Consensus 133 ~~~v~g~~~~~e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~L-ng~~l~g 211 (813)
++...-..+..+...++|||++|-..++|.+|++.|.+||+|+++.+.. .+++|||+|.+.++|+.|..+. +...|.|
T Consensus 214 a~~~~~lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~-~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G 292 (377)
T KOG0153|consen 214 AGSAGTLEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP-RKGCAFVTFTTREAAEKAAEKSFNKLVING 292 (377)
T ss_pred cccccccCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec-ccccceeeehhhHHHHHHHHhhcceeeecc
Confidence 3333334455666779999999999999999999999999999998543 4679999999999999988755 5566799
Q ss_pred ceeeeeecCCC
Q 003524 212 RKLDIHFSIPK 222 (813)
Q Consensus 212 r~L~V~~a~pk 222 (813)
++|.|.|..++
T Consensus 293 ~Rl~i~Wg~~~ 303 (377)
T KOG0153|consen 293 FRLKIKWGRPK 303 (377)
T ss_pred eEEEEEeCCCc
Confidence 99999999883
No 117
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.46 E-value=3.4e-07 Score=98.29 Aligned_cols=78 Identities=35% Similarity=0.509 Sum_probs=68.9
Q ss_pred CcCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEeCCCCccEEEEEEcCHHHHHHHHHHh-CCCccCCceEEEEecCC
Q 003524 228 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSL-NRSDIAGKRIKLEPSRP 306 (813)
Q Consensus 228 ~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri~~~srG~aFVeF~d~e~A~~Ai~~L-nG~~i~Gr~I~V~~ak~ 306 (813)
++..-++|||++|-..+++.+|++.|.+||+|+.|++... +++|||+|.+.++|+.|..++ |...|.|++|+|.|+++
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 4455679999999999999999999999999999998654 469999999999999988655 55688999999999998
No 118
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.45 E-value=9.5e-07 Score=89.78 Aligned_cols=63 Identities=27% Similarity=0.420 Sum_probs=53.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEeCC-CcceEEEEEEccHHHHHHHHHHhcCCccc
Q 003524 148 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC-KHRGFVMISYYDIRAARTAMRALQNKPLR 210 (813)
Q Consensus 148 rtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~~~-ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~ 210 (813)
.||||-||.++++|++|+.+|+.|.....+++.. .....|||+|.+.+.|..|+..|+|..|.
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 4899999999999999999999998766666432 24458999999999999999999997763
No 119
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.41 E-value=2.6e-07 Score=93.58 Aligned_cols=143 Identities=20% Similarity=0.307 Sum_probs=115.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEe----CCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecC
Q 003524 145 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 220 (813)
Q Consensus 145 ~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 220 (813)
...+||||.|+-..++|+-|.++|-+-|+|..|.+ .++.+ ||||.|.++-...-|++.+||..+.++.+.|.+-.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 35689999999999999999999999999999974 34444 99999999999999999999999999988887643
Q ss_pred CCCCCCCCcCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEe----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCC
Q 003524 221 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG 296 (813)
Q Consensus 221 pk~~~~~~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri----~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~G 296 (813)
-... . -|+..++++.+...|+.-|.+..+|+ .++.+.++|+.+....+.-.|+....+....-
T Consensus 86 G~sh--------a-----pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~ 152 (267)
T KOG4454|consen 86 GNSH--------A-----PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQ 152 (267)
T ss_pred CCCc--------c-----hhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCC
Confidence 2111 0 15667899999999999999988875 34567899999998888888888777665554
Q ss_pred ceEEE
Q 003524 297 KRIKL 301 (813)
Q Consensus 297 r~I~V 301 (813)
+++.+
T Consensus 153 ~~~~~ 157 (267)
T KOG4454|consen 153 KKVTI 157 (267)
T ss_pred CCccc
Confidence 44433
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.41 E-value=5.4e-08 Score=114.21 Aligned_cols=138 Identities=14% Similarity=0.232 Sum_probs=118.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE-----eCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecCCC
Q 003524 148 RTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 222 (813)
Q Consensus 148 rtLfVgNLP~~vTeedL~~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 222 (813)
.++||+||+..+.+++|...|..+|.+..+. ..++.+|+|||.|...++|.+|+....+..+ |
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~-g----------- 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF-G----------- 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh-h-----------
Confidence 5799999999999999999999999887765 4678999999999999999999995443333 2
Q ss_pred CCCCCCcCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEe----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCce
Q 003524 223 DNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR 298 (813)
Q Consensus 223 ~~~~~~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri----~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~ 298 (813)
...|+|+|.|...|.++|+.++.++|.+.+.++ .++.+|.|||.|.+..+|.+++...+...+.-+.
T Consensus 736 ---------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~ 806 (881)
T KOG0128|consen 736 ---------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENN 806 (881)
T ss_pred ---------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcC
Confidence 236999999999999999999999999999864 4667899999999999999999988888777777
Q ss_pred EEEEecCC
Q 003524 299 IKLEPSRP 306 (813)
Q Consensus 299 I~V~~ak~ 306 (813)
+.|..+.|
T Consensus 807 ~~v~vsnp 814 (881)
T KOG0128|consen 807 GEVQVSNP 814 (881)
T ss_pred ccccccCC
Confidence 77777555
No 121
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.40 E-value=4.4e-07 Score=93.54 Aligned_cols=143 Identities=17% Similarity=0.299 Sum_probs=105.8
Q ss_pred cCccccccCCCCCCchhhHHhhcCCCceeeeccCCCCCcccEEEEEeCChhhhcccCCc----ccCCCC-----------
Q 003524 69 MDDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEPQESLSMSMSKISISDSASGNGLLHY----SVPNGA----------- 133 (813)
Q Consensus 69 ~del~l~~Lp~s~gEiel~~lF~~~G~v~l~~D~~t~~s~G~afV~f~d~e~A~~~~~~----~~~n~~----------- 133 (813)
|..+||+.|+....+.++..+|..+|.+.-. ..-.||+||.|.|.-.|..++.. .+....
T Consensus 1 m~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~-----~mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 1 MPRVYIGRLPYRARERDVERFFKGYGKIPDA-----DMKNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred CCceeecccCCccchhHHHHHHhhccccccc-----eeecccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 4578999999999999999999999986421 12247889999988776633211 111110
Q ss_pred --CccC-C----CCC---CCCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEeCCCcceEEEEEEccHHHHHHHHHH
Q 003524 134 --GTVA-G----EHP---YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRA 203 (813)
Q Consensus 134 --~~v~-g----~~~---~~e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~ 203 (813)
.... + ... ......+.|+|.+++..+.+.+|.+.|.++|.+..... ..+++||+|...++|.+|+..
T Consensus 76 ~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~ 152 (216)
T KOG0106|consen 76 GRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEK 152 (216)
T ss_pred ccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchh
Confidence 0000 1 000 11234568899999999999999999999999944432 678999999999999999999
Q ss_pred hcCCccccceeeeeec
Q 003524 204 LQNKPLRRRKLDIHFS 219 (813)
Q Consensus 204 Lng~~l~gr~L~V~~a 219 (813)
|++..+.++.|.+...
T Consensus 153 l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 153 LDGKKLNGRRISVEKN 168 (216)
T ss_pred ccchhhcCceeeeccc
Confidence 9999999999999544
No 122
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=7.9e-07 Score=95.37 Aligned_cols=77 Identities=27% Similarity=0.426 Sum_probs=70.4
Q ss_pred CcceeeeeccCCCCCHHHHHHHhcccCCeEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003524 231 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 305 (813)
Q Consensus 231 ~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak 305 (813)
..+.|||.-|.+-++++||.-+|+.||+|++|.+ ++.+-.||||+|++.+++++|.-.|++..|..++|.|.|++
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 4578999999999999999999999999999865 56667799999999999999999999999999999999986
Q ss_pred CC
Q 003524 306 PG 307 (813)
Q Consensus 306 ~~ 307 (813)
.-
T Consensus 318 SV 319 (479)
T KOG0415|consen 318 SV 319 (479)
T ss_pred hh
Confidence 53
No 123
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=8e-07 Score=95.33 Aligned_cols=78 Identities=21% Similarity=0.419 Sum_probs=72.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE-----eCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeee
Q 003524 144 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 218 (813)
Q Consensus 144 e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 218 (813)
..|...|||..|.+-+|+++|.-+|+.||.|.+|. .++.+..||||+|.+.+++++|.-+|++..|..+.|.|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 35778999999999999999999999999999987 3777888999999999999999999999999999999999
Q ss_pred cCC
Q 003524 219 SIP 221 (813)
Q Consensus 219 a~p 221 (813)
+..
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 864
No 124
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.24 E-value=1.4e-06 Score=94.44 Aligned_cols=164 Identities=20% Similarity=0.278 Sum_probs=128.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE-----eCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeec
Q 003524 145 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 219 (813)
Q Consensus 145 ~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 219 (813)
...+++|++++...+.+.+...++..+|.+..+. ....++|+++|.|...+.+..|+.......+.++.+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 3578999999999999999999999999766654 35678999999999999999999954434555555444333
Q ss_pred CCCCC-------CCCCcCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEe-----CCCCccEEEEEEcCHHHHHHHHH
Q 003524 220 IPKDN-------PSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALK 287 (813)
Q Consensus 220 ~pk~~-------~~~~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~~Ai~ 287 (813)
..... ..........++|.+|+.++++++|+..|..+|.|..+++ ++..+++|||+|.+...+..|+.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 22111 1111122233449999999999999999999999999976 45668999999999999999998
Q ss_pred HhCCCccCCceEEEEecCCCcc
Q 003524 288 SLNRSDIAGKRIKLEPSRPGGA 309 (813)
Q Consensus 288 ~LnG~~i~Gr~I~V~~ak~~~~ 309 (813)
. ....+.++.+.+.+..+...
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred c-ccCcccCcccccccCCCCcc
Confidence 7 88899999999999887653
No 125
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.19 E-value=4.4e-06 Score=84.47 Aligned_cols=80 Identities=18% Similarity=0.369 Sum_probs=71.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhc-CCEEEEE-----eCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeee
Q 003524 143 GEHPSRTLFVRNINSNVEDSELRALFEQY-GDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 216 (813)
Q Consensus 143 ~e~~srtLfVgNLP~~vTeedL~~lFs~f-G~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V 216 (813)
.......+||..+|.-+.+.++..+|.+| |.|..++ .+|.++|||||+|.+++.|.-|-+.||+..+.++.|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 33456789999999999999999999999 6676665 48899999999999999999999999999999999999
Q ss_pred eecCCC
Q 003524 217 HFSIPK 222 (813)
Q Consensus 217 ~~a~pk 222 (813)
++-.|.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 997654
No 126
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.17 E-value=4.8e-06 Score=84.22 Aligned_cols=79 Identities=18% Similarity=0.265 Sum_probs=71.9
Q ss_pred cCCcceeeeeccCCCCCHHHHHHHhccc-CCeEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 003524 229 DLNQGTLVVFNLDPSVSNEDLRQIFGAY-GEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 302 (813)
Q Consensus 229 ~~~~~tLfV~NLp~~vteedL~~lFs~f-G~I~~iri-----~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~ 302 (813)
....+.++|..+|.-+.+.++..+|.+| |.|..+|+ +|+++|||||+|++.+.|.-|-+.||++.+.++.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3455789999999999999999999998 77777765 88999999999999999999999999999999999999
Q ss_pred ecCCC
Q 003524 303 PSRPG 307 (813)
Q Consensus 303 ~ak~~ 307 (813)
+-.|.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 98776
No 127
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=1.7e-05 Score=89.57 Aligned_cols=141 Identities=16% Similarity=0.186 Sum_probs=102.6
Q ss_pred HHhhcccCccccccCCCCCCchhhHHhhcCCCceeeeccCC-----CCCccc---EEEEEeCChhhhcc-----------
Q 003524 63 ELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEPQ-----ESLSMS---MSKISISDSASGNG----------- 123 (813)
Q Consensus 63 dl~~~v~del~l~~Lp~s~gEiel~~lF~~~G~v~l~~D~~-----t~~s~G---~afV~f~d~e~A~~----------- 123 (813)
.....+...+||++||++++|.++...|+.+|.+.++-... ..-.+| |+|+-|.++.....
T Consensus 253 ~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~ 332 (520)
T KOG0129|consen 253 YRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGN 332 (520)
T ss_pred CCccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccc
Confidence 44444568899999999999999999999999988754411 112346 99999998765431
Q ss_pred ----cCCcccCCCCCccC----------CCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHh-hcCCEEEEEe-----CCCc
Q 003524 124 ----LLHYSVPNGAGTVA----------GEHPYGEHPSRTLFVRNINSNVEDSELRALFE-QYGDIRTLYT-----ACKH 183 (813)
Q Consensus 124 ----~~~~~~~n~~~~v~----------g~~~~~e~~srtLfVgNLP~~vTeedL~~lFs-~fG~I~~v~~-----~~ks 183 (813)
+...++..+..++. -.....-++.+||||++||.-++.++|..+|+ -||.|..+-+ .+-.
T Consensus 333 ~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYP 412 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYP 412 (520)
T ss_pred eEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCC
Confidence 11111111111111 11223456789999999999999999999999 8999988763 2347
Q ss_pred ceEEEEEEccHHHHHHHHHH
Q 003524 184 RGFVMISYYDIRAARTAMRA 203 (813)
Q Consensus 184 rG~AFV~F~d~e~A~~Ai~~ 203 (813)
+|-|-|.|.+..+-.+||.+
T Consensus 413 kGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 413 KGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCcceeeecccHHHHHHHhh
Confidence 89999999999999999984
No 128
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.14 E-value=2.4e-06 Score=88.50 Aligned_cols=158 Identities=18% Similarity=0.213 Sum_probs=114.9
Q ss_pred EEEEcCCCCCCCHHH-H--HHHHhhcCCEEEEE----eCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecCC
Q 003524 149 TLFVRNINSNVEDSE-L--RALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 221 (813)
Q Consensus 149 tLfVgNLP~~vTeed-L--~~lFs~fG~I~~v~----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 221 (813)
.+++.++-.++..+- | ...|+.|-.+...+ ..+.-++++|+.|.....-.++-..-+++.++-..+++.-...
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gts 177 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTS 177 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccc
Confidence 445666555555444 2 45565554443332 3566788999999998888888877777777777666554433
Q ss_pred CCCCC--CCcCCcceeeeeccCCCCCHHHHHHHhcccCCe-----EEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCcc
Q 003524 222 KDNPS--DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEV-----KEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDI 294 (813)
Q Consensus 222 k~~~~--~~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I-----~~iri~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i 294 (813)
.+++. +-+.++-.||.+.|..+++++.|-..|.+|-.. ..-.-+++++||+||.|.+..++.+|+++|+|+.+
T Consensus 178 wedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV 257 (290)
T KOG0226|consen 178 WEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV 257 (290)
T ss_pred cCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc
Confidence 33322 223345689999999999999999999998533 22234789999999999999999999999999999
Q ss_pred CCceEEEEecCC
Q 003524 295 AGKRIKLEPSRP 306 (813)
Q Consensus 295 ~Gr~I~V~~ak~ 306 (813)
+.+.|++.-+.-
T Consensus 258 gsrpiklRkS~w 269 (290)
T KOG0226|consen 258 GSRPIKLRKSEW 269 (290)
T ss_pred ccchhHhhhhhH
Confidence 999998865443
No 129
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.11 E-value=7.5e-06 Score=92.19 Aligned_cols=76 Identities=18% Similarity=0.340 Sum_probs=67.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEe-----CCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeec
Q 003524 145 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 219 (813)
Q Consensus 145 ~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 219 (813)
.-.++|||.+|...+-..+|+.||++||+|.-.++ +.-.++|+||++.+.++|.+||..|+...|.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34689999999999999999999999999987662 3346789999999999999999999999999999999876
Q ss_pred C
Q 003524 220 I 220 (813)
Q Consensus 220 ~ 220 (813)
+
T Consensus 483 K 483 (940)
T KOG4661|consen 483 K 483 (940)
T ss_pred c
Confidence 4
No 130
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.07 E-value=5.6e-06 Score=93.19 Aligned_cols=74 Identities=24% Similarity=0.466 Sum_probs=67.6
Q ss_pred ceeeeeccCCCCCHHHHHHHhcccCCeEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003524 233 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 306 (813)
Q Consensus 233 ~tLfV~NLp~~vteedL~~lFs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak~ 306 (813)
++|||++|...+...+|+.+|++||+|+-.++ ++..+.|+||++.+.++|.++|..|+.+++.|+.|.|+-++.
T Consensus 406 RNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 406 RNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred cceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 58999999999999999999999999988765 344578999999999999999999999999999999998875
No 131
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.05 E-value=2.6e-05 Score=84.09 Aligned_cols=152 Identities=14% Similarity=0.183 Sum_probs=106.0
Q ss_pred ccCccccccCCCCCCchhhHHhhcCCCcee-----------eeccCCCCCcccEEEEEeCChhhhc----ccCCcccCCC
Q 003524 68 IMDDFDLRGLPSSLEDLEDYDIFGSGGGME-----------LEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNG 132 (813)
Q Consensus 68 v~del~l~~Lp~s~gEiel~~lF~~~G~v~-----------l~~D~~t~~s~G~afV~f~d~e~A~----~~~~~~~~n~ 132 (813)
+-+.+||.+||.+++..|..++|+.||.|- |-.+. .|.-+|=|.+.|...++.. .+....+.+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 456799999999999999999999999642 32332 3667788888886655433 0010000000
Q ss_pred -----------------CCc-----------------cCCC-----CCCCCCCCCEEEEcCCCC----CCC-------HH
Q 003524 133 -----------------AGT-----------------VAGE-----HPYGEHPSRTLFVRNINS----NVE-------DS 162 (813)
Q Consensus 133 -----------------~~~-----------------v~g~-----~~~~e~~srtLfVgNLP~----~vT-------ee 162 (813)
..+ .-+. .+......++|.++|+=. ..+ ++
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 000 0001 122334568999999842 122 35
Q ss_pred HHHHHHhhcCCEEEEEe-CCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecC
Q 003524 163 ELRALFEQYGDIRTLYT-ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 220 (813)
Q Consensus 163 dL~~lFs~fG~I~~v~~-~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 220 (813)
+|++-.++||.|..|.+ .....|.+-|.|.+.++|..||+.|+|+.+.||.|......
T Consensus 292 dl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 56677889999999985 46688999999999999999999999999999999988764
No 132
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.00 E-value=5e-07 Score=98.66 Aligned_cols=149 Identities=18% Similarity=0.350 Sum_probs=121.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhc--CCEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcCC-ccccceeeeeecCCCCC
Q 003524 148 RTLFVRNINSNVEDSELRALFEQY--GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK-PLRRRKLDIHFSIPKDN 224 (813)
Q Consensus 148 rtLfVgNLP~~vTeedL~~lFs~f--G~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~-~l~gr~L~V~~a~pk~~ 224 (813)
.+||++||.+.++.++|+.+|..- +--..+ --..||+||.+.+...|.+|++.++|+ .+.|+++.|..+.++..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~f---l~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQF---LVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcce---eeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 468999999999999999999843 111111 124689999999999999999999985 58899999999887654
Q ss_pred CCCCcCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEeCCCC--ccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 003524 225 PSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHK--RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 302 (813)
Q Consensus 225 ~~~~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri~~~s--rG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~ 302 (813)
. .+.+-|.|+|+....+-|..+...||.|..|..+... .-..-|+|...+.+..||..|+|..+....++|.
T Consensus 79 r------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~ 152 (584)
T KOG2193|consen 79 R------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVG 152 (584)
T ss_pred H------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcc
Confidence 3 3458999999999999999999999999988653222 2234578999999999999999999999999988
Q ss_pred ecC
Q 003524 303 PSR 305 (813)
Q Consensus 303 ~ak 305 (813)
|--
T Consensus 153 YiP 155 (584)
T KOG2193|consen 153 YIP 155 (584)
T ss_pred cCc
Confidence 853
No 133
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.96 E-value=2.1e-05 Score=82.84 Aligned_cols=78 Identities=22% Similarity=0.356 Sum_probs=69.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE----eCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecC
Q 003524 145 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 220 (813)
Q Consensus 145 ~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 220 (813)
.-..+|+|.|||+.|+++||+++|..||.++.+- ..+++.|.|-|.|...++|.+|++.+++..+.|+.|++....
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 3457899999999999999999999999887765 478899999999999999999999999999999999988765
Q ss_pred CC
Q 003524 221 PK 222 (813)
Q Consensus 221 pk 222 (813)
+.
T Consensus 161 ~~ 162 (243)
T KOG0533|consen 161 SP 162 (243)
T ss_pred Cc
Confidence 43
No 134
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.91 E-value=2.8e-05 Score=90.11 Aligned_cols=85 Identities=18% Similarity=0.372 Sum_probs=74.4
Q ss_pred CCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEe--------CCCcceEEEEEEccHHHHHHHHHHhcCCc
Q 003524 137 AGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--------ACKHRGFVMISYYDIRAARTAMRALQNKP 208 (813)
Q Consensus 137 ~g~~~~~e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~--------~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~ 208 (813)
.|....++..+++|||+||++.++++.|...|..||+|..+++ ..+.+-|+||.|.+..+|++|++.|+|..
T Consensus 164 ~gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~i 243 (877)
T KOG0151|consen 164 PGSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGII 243 (877)
T ss_pred CCcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhccee
Confidence 3444455667899999999999999999999999999999883 34567799999999999999999999999
Q ss_pred cccceeeeeecCC
Q 003524 209 LRRRKLDIHFSIP 221 (813)
Q Consensus 209 l~gr~L~V~~a~p 221 (813)
+.+..+++.|+++
T Consensus 244 v~~~e~K~gWgk~ 256 (877)
T KOG0151|consen 244 VMEYEMKLGWGKA 256 (877)
T ss_pred eeeeeeeeccccc
Confidence 9999999999853
No 135
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=97.88 E-value=9.4e-06 Score=82.12 Aligned_cols=90 Identities=21% Similarity=0.368 Sum_probs=60.7
Q ss_pred CcceeEEeecCCCCCCHHHHHHHHHhhCCCcccEEEee--eccc--ccceeEEEEEecCCcccHHHHHHHhcCCcccCCC
Q 003524 647 DTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLP--IDFK--NKCNVGYAFINMLSPLHIIPFYEAFNGKKWEKFN 722 (813)
Q Consensus 647 d~rTTvMirNIPnk~~~~~l~~~id~~~~~~ydf~Ylp--~df~--~~~n~gyaFin~~~~~~~~~f~~~f~~~~w~~~~ 722 (813)
..++.|.||++|..+|.+.+++.|+......++|-|.+ .+.. ..+-...|||||.+.+++..|.+.|+|+.|..-.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 45789999999999999999998887666666566665 2222 3345677999999999999999999999998654
Q ss_pred C-ccEEEEEeeeccc
Q 003524 723 S-EKVASLAYARIQG 736 (813)
Q Consensus 723 s-~k~~~~~~A~iQg 736 (813)
. .-++.|.||--|-
T Consensus 85 g~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQK 99 (176)
T ss_dssp S-EEEEEEEE-SS--
T ss_pred CCCcceeEEEcchhc
Confidence 3 4889999998764
No 136
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.84 E-value=2.1e-05 Score=90.98 Aligned_cols=78 Identities=29% Similarity=0.414 Sum_probs=70.5
Q ss_pred cCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEeC--------CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 003524 229 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET--------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 300 (813)
Q Consensus 229 ~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri~--------~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~ 300 (813)
+...++|||+||++.++++.|...|+.||.|..+++. ...+.|+||-|-+..+|++|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4566799999999999999999999999999999762 23467999999999999999999999999999999
Q ss_pred EEecCC
Q 003524 301 LEPSRP 306 (813)
Q Consensus 301 V~~ak~ 306 (813)
+.|+++
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999865
No 137
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.79 E-value=3.1e-05 Score=91.92 Aligned_cols=152 Identities=20% Similarity=0.265 Sum_probs=117.4
Q ss_pred cCccccccCCCCCCchhhHHhhcCCCcee-eeccCC-CCCcccEEEEEeCChhhhc----ccCCcccCCCCCccCCCCCC
Q 003524 69 MDDFDLRGLPSSLEDLEDYDIFGSGGGME-LEGEPQ-ESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHPY 142 (813)
Q Consensus 69 ~del~l~~Lp~s~gEiel~~lF~~~G~v~-l~~D~~-t~~s~G~afV~f~d~e~A~----~~~~~~~~n~~~~v~g~~~~ 142 (813)
.+.+++++|...+++.++..+|...|.+. |.++.. -+....|+||.|....++- ......+.++..++....+
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~- 450 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP- 450 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccccc-
Confidence 58899999999999999999999998764 444432 4566689999998765443 2222233333333222222
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcCCcccc--ceeeeeecC
Q 003524 143 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSI 220 (813)
Q Consensus 143 ~e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~g--r~L~V~~a~ 220 (813)
...+++.+||++|...+....|...|..||.|+.|.. .+..-||+|.|.+...|+.|++.|.|..|++ +.+.|.|+.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy-~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY-RHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeec-ccCCcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 4567899999999999999999999999999999864 3456799999999999999999999999985 678888876
Q ss_pred CC
Q 003524 221 PK 222 (813)
Q Consensus 221 pk 222 (813)
+.
T Consensus 530 ~~ 531 (975)
T KOG0112|consen 530 PP 531 (975)
T ss_pred CC
Confidence 54
No 138
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.79 E-value=6.8e-05 Score=79.09 Aligned_cols=78 Identities=24% Similarity=0.350 Sum_probs=69.6
Q ss_pred CcceeeeeccCCCCCHHHHHHHhcccCCeEEEEe----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003524 231 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 306 (813)
Q Consensus 231 ~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri----~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak~ 306 (813)
...+|+|.|||..|+++||+++|..||.++.+-+ .+.+.|.|=|.|...++|++|++.++|..++|+.+++....+
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 3468999999999999999999999998877743 567789999999999999999999999999999999988766
Q ss_pred Cc
Q 003524 307 GG 308 (813)
Q Consensus 307 ~~ 308 (813)
..
T Consensus 162 ~~ 163 (243)
T KOG0533|consen 162 PS 163 (243)
T ss_pred cc
Confidence 54
No 139
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.78 E-value=3.3e-05 Score=87.42 Aligned_cols=75 Identities=24% Similarity=0.405 Sum_probs=63.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEe-----CCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecC
Q 003524 146 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 220 (813)
Q Consensus 146 ~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 220 (813)
...+|||+|||.++++++|+++|..||+|+...+ .++..+||||+|.+.++++.|+.+ +-..|++++|.|+--.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 3456999999999999999999999999998652 244448999999999999999996 5788899999998544
Q ss_pred C
Q 003524 221 P 221 (813)
Q Consensus 221 p 221 (813)
+
T Consensus 366 ~ 366 (419)
T KOG0116|consen 366 P 366 (419)
T ss_pred c
Confidence 3
No 140
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.74 E-value=0.00028 Score=76.93 Aligned_cols=153 Identities=16% Similarity=0.233 Sum_probs=109.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhc-----CCEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeec
Q 003524 145 HPSRTLFVRNINSNVEDSELRALFEQY-----GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 219 (813)
Q Consensus 145 ~~srtLfVgNLP~~vTeedL~~lFs~f-----G~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 219 (813)
+++..+-.++||+..++.+|..+|.-. |.+......++..|.|.|.|.|.|.-+.|++. +...+.++.|.|.-+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeecc
Confidence 345566789999999999999999832 33333335678889999999999999999984 777788888887655
Q ss_pred CCCCC---------CC---CCcCCcceeeeeccCCCCCHHHHHHHhccc-----C--CeEEEEe-CCCCccEEEEEEcCH
Q 003524 220 IPKDN---------PS---DKDLNQGTLVVFNLDPSVSNEDLRQIFGAY-----G--EVKEIRE-TPHKRHHKFIEFYDV 279 (813)
Q Consensus 220 ~pk~~---------~~---~~~~~~~tLfV~NLp~~vteedL~~lFs~f-----G--~I~~iri-~~~srG~aFVeF~d~ 279 (813)
...+- .. ....++-.|.+++||++.++.|+.++|.+- | .|.-|+. .++..|-|||.|..+
T Consensus 137 ~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~e 216 (508)
T KOG1365|consen 137 TGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACE 216 (508)
T ss_pred CchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCH
Confidence 43321 00 011234578889999999999999999732 2 2233333 667788999999999
Q ss_pred HHHHHHHHHhCCCccCCceE
Q 003524 280 RAAEAALKSLNRSDIAGKRI 299 (813)
Q Consensus 280 e~A~~Ai~~LnG~~i~Gr~I 299 (813)
++|+.|+.+ |...++-|.|
T Consensus 217 e~aq~aL~k-hrq~iGqRYI 235 (508)
T KOG1365|consen 217 EDAQFALRK-HRQNIGQRYI 235 (508)
T ss_pred HHHHHHHHH-HHHHHhHHHH
Confidence 999999984 4344443333
No 141
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.70 E-value=5.6e-05 Score=85.56 Aligned_cols=75 Identities=27% Similarity=0.493 Sum_probs=64.5
Q ss_pred ceeeeeccCCCCCHHHHHHHhcccCCeEEEEeC-----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003524 233 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 307 (813)
Q Consensus 233 ~tLfV~NLp~~vteedL~~lFs~fG~I~~iri~-----~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak~~ 307 (813)
.+|||.|||.+++.++|+++|..||.|+..++. ++...||||+|.+.++++.||++ +-..+++++|.|+-.++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 469999999999999999999999999987652 22237999999999999999996 477889999999987765
Q ss_pred c
Q 003524 308 G 308 (813)
Q Consensus 308 ~ 308 (813)
.
T Consensus 368 ~ 368 (419)
T KOG0116|consen 368 F 368 (419)
T ss_pred c
Confidence 4
No 142
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.67 E-value=7.4e-05 Score=77.73 Aligned_cols=76 Identities=20% Similarity=0.341 Sum_probs=66.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEE-----EeCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeec
Q 003524 145 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTL-----YTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 219 (813)
Q Consensus 145 ~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v-----~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 219 (813)
...-+||.+.|..+++++.|...|.+|-..... +.+++++||+||.|.+..++..|+++|+|+.++.+.|+++-+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 345799999999999999999999998653322 258999999999999999999999999999999999988755
Q ss_pred C
Q 003524 220 I 220 (813)
Q Consensus 220 ~ 220 (813)
.
T Consensus 268 ~ 268 (290)
T KOG0226|consen 268 E 268 (290)
T ss_pred h
Confidence 4
No 143
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.64 E-value=2e-05 Score=85.83 Aligned_cols=159 Identities=16% Similarity=0.139 Sum_probs=115.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEeC--------CCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeee-
Q 003524 148 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTA--------CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF- 218 (813)
Q Consensus 148 rtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~~--------~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~- 218 (813)
..|-|.||.+.+|.++++.||.-.|+|..+.+. ......|||.|.|...+..|.. |.+..+-++.|.|..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 488999999999999999999999999988732 2345689999999999999987 666666666555432
Q ss_pred cCCCC----------------------------CCC--CCcC---------------------CcceeeeeccCCCCCHH
Q 003524 219 SIPKD----------------------------NPS--DKDL---------------------NQGTLVVFNLDPSVSNE 247 (813)
Q Consensus 219 a~pk~----------------------------~~~--~~~~---------------------~~~tLfV~NLp~~vtee 247 (813)
..+.. .+. .... -..+++|.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 11100 000 0000 01479999999999999
Q ss_pred HHHHHhcccCCeEEEEeC-CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003524 248 DLRQIFGAYGEVKEIRET-PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 308 (813)
Q Consensus 248 dL~~lFs~fG~I~~iri~-~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak~~~ 308 (813)
++-+.|..+|+|.+.+.. +....++-|+|........|+. ++|..+.-...++..-+|..
T Consensus 167 e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP~k 227 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKPHK 227 (479)
T ss_pred hhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCccc
Confidence 999999999999988763 3334577899999999999988 67777764444444444443
No 144
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.63 E-value=2.4e-05 Score=92.54 Aligned_cols=149 Identities=13% Similarity=0.190 Sum_probs=117.6
Q ss_pred CCCCchHHHhhcccCccccccCCCCCCchhhHHhhcCCCcee---eeccCCCCCcccEEEEEeCChhhhcccCCcccCCC
Q 003524 56 SLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGME---LEGEPQESLSMSMSKISISDSASGNGLLHYSVPNG 132 (813)
Q Consensus 56 llPdd~ddl~~~v~del~l~~Lp~s~gEiel~~lF~~~G~v~---l~~D~~t~~s~G~afV~f~d~e~A~~~~~~~~~n~ 132 (813)
+.|++..++++ .|+++|+..+.+.++...|...|.++ +..-..+++-+|+||+.|.+.+.+...+.+...
T Consensus 659 vs~n~~R~~~~-----~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~-- 731 (881)
T KOG0128|consen 659 VSPNEIRDLIK-----IFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDS-- 731 (881)
T ss_pred cCchHHHHHHH-----HHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhh--
Confidence 44555444444 57899999999999999998888765 333446788899999999988766655433222
Q ss_pred CCccCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE----eCCCcceEEEEEEccHHHHHHHHHHhcCCc
Q 003524 133 AGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKP 208 (813)
Q Consensus 133 ~~~v~g~~~~~e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~ 208 (813)
... ....|+|+|.|+..|.++|+.++..+|.+.++. ..++.+|.|+|.|.++.+|.+++...+...
T Consensus 732 --~~~--------gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~ 801 (881)
T KOG0128|consen 732 --CFF--------GKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAG 801 (881)
T ss_pred --hhh--------hhhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhh
Confidence 111 256899999999999999999999999998886 468899999999999999999999888888
Q ss_pred cccceeeeeecCC
Q 003524 209 LRRRKLDIHFSIP 221 (813)
Q Consensus 209 l~gr~L~V~~a~p 221 (813)
+..+.+.|..+.|
T Consensus 802 ~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 802 KRENNGEVQVSNP 814 (881)
T ss_pred hhhcCccccccCC
Confidence 8877788877665
No 145
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.62 E-value=0.00018 Score=63.37 Aligned_cols=69 Identities=26% Similarity=0.332 Sum_probs=48.3
Q ss_pred ceeeeeccCCCCCHHH----HHHHhcccC-CeEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003524 233 GTLVVFNLDPSVSNED----LRQIFGAYG-EVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 306 (813)
Q Consensus 233 ~tLfV~NLp~~vteed----L~~lFs~fG-~I~~iri~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak~ 306 (813)
..|+|.|||.+.+... |++++.-+| +|..| . .+.|+|.|.+.+.|++|.+.|+|..+.|.+|.|.|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~---~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S---GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e---CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 4699999999888655 567777775 67666 3 36799999999999999999999999999999999854
No 146
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.57 E-value=0.00035 Score=63.85 Aligned_cols=73 Identities=18% Similarity=0.352 Sum_probs=59.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhc--CCEEEEE-----eCCCcceEEEEEEccHHHHHHHHHHhcCCccc----cceeee
Q 003524 148 RTLFVRNINSNVEDSELRALFEQY--GDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLR----RRKLDI 216 (813)
Q Consensus 148 rtLfVgNLP~~vTeedL~~lFs~f--G~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~----gr~L~V 216 (813)
+||.|+|||...|.++|.+++... |...-++ .+..+.|||||.|.+.+.|.+-.+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999998853 3333333 35678999999999999999999999998875 456677
Q ss_pred eecC
Q 003524 217 HFSI 220 (813)
Q Consensus 217 ~~a~ 220 (813)
.||.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7765
No 147
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.56 E-value=0.00015 Score=78.74 Aligned_cols=172 Identities=16% Similarity=0.186 Sum_probs=121.3
Q ss_pred cccccccCCCCCchHHHhhcccCccccccCCCCCCchhhHHhhcCCCce---eeeccCCCCCcccEEEEEeCChhhhc--
Q 003524 48 VMNPAIGNSLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN-- 122 (813)
Q Consensus 48 ~e~~~IgnllPdd~ddl~~~v~del~l~~Lp~s~gEiel~~lF~~~G~v---~l~~D~~t~~s~G~afV~f~d~e~A~-- 122 (813)
.-..+++++....+.+ +.....+++.+-...++.++..++...|.. .+........++|++.+.|...+.+.
T Consensus 70 ~~~~~~~~~s~~~~~~---~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~ 146 (285)
T KOG4210|consen 70 DGLSEEDSLSSKEELR---GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAA 146 (285)
T ss_pred cchhhcccccCCcccc---cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHH
Confidence 4556677776654222 445778999999999998888888887742 23344456788999999998776443
Q ss_pred -ccCCc-ccCCC-----CCccCCC-----C-CCCCCCCCEEE-EcCCCCCCCHHHHHHHHhhcCCEEEEE-----eCCCc
Q 003524 123 -GLLHY-SVPNG-----AGTVAGE-----H-PYGEHPSRTLF-VRNINSNVEDSELRALFEQYGDIRTLY-----TACKH 183 (813)
Q Consensus 123 -~~~~~-~~~n~-----~~~v~g~-----~-~~~e~~srtLf-VgNLP~~vTeedL~~lFs~fG~I~~v~-----~~~ks 183 (813)
.+... ..... .....+. . .....+..++| |++|+.++++++|+..|..+|.|..++ .++..
T Consensus 147 l~~s~~~~~~~~~~~~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~ 226 (285)
T KOG4210|consen 147 LEESGSKVLDGNKGEKDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDS 226 (285)
T ss_pred HHhhhccccccccccCcccccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccch
Confidence 11110 00000 0000010 0 11223345565 999999999999999999999999987 36789
Q ss_pred ceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecCCCC
Q 003524 184 RGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 223 (813)
Q Consensus 184 rG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 223 (813)
+|||+|.|.....+..|+.. +...+.++++.+.+..+..
T Consensus 227 kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 227 KGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred hhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCc
Confidence 99999999999999999987 8889999999999887653
No 148
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.53 E-value=0.00011 Score=77.32 Aligned_cols=79 Identities=24% Similarity=0.372 Sum_probs=69.5
Q ss_pred CcCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEE-----eCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 003524 228 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 302 (813)
Q Consensus 228 ~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~ir-----i~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~ 302 (813)
.......+||+|++..+|.+++...|+.||.|..+. ..++.+||+||+|.+.+.+++|++ |||..|.|+.|.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 445667899999999999999999999999997553 355689999999999999999999 99999999999999
Q ss_pred ecCCC
Q 003524 303 PSRPG 307 (813)
Q Consensus 303 ~ak~~ 307 (813)
+.+-.
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 87643
No 149
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.40 E-value=0.00031 Score=81.46 Aligned_cols=161 Identities=15% Similarity=0.064 Sum_probs=114.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhh-cCCEEEE---EeCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecC
Q 003524 145 HPSRTLFVRNINSNVEDSELRALFEQ-YGDIRTL---YTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 220 (813)
Q Consensus 145 ~~srtLfVgNLP~~vTeedL~~lFs~-fG~I~~v---~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 220 (813)
.+.+.+-+++.+.+.++.+++++|.. +-.-..+ .+.+...|-++|.|....++++|++. +......|.+.|..+.
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPG 387 (944)
T ss_pred chhheeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCC
Confidence 44566667899999999999999973 2222222 24444578999999999999999883 5555556666554321
Q ss_pred CCC-------------C------------CC----------CCcCCcceeeeeccCCCCCHHHHHHHhcccCCeEE-EEe
Q 003524 221 PKD-------------N------------PS----------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE-IRE 264 (813)
Q Consensus 221 pk~-------------~------------~~----------~~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~-iri 264 (813)
... . +. .......+|||..||..+++.++.++|..--.|++ |.+
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 000 0 00 00011258999999999999999999998777776 655
Q ss_pred C----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003524 265 T----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 306 (813)
Q Consensus 265 ~----~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak~ 306 (813)
+ ++.++.|||.|..++++.+|...-+...++.+.|+|.-...
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~ 513 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIAD 513 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhh
Confidence 3 34567899999999999999887777777889999975443
No 150
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.40 E-value=8.7e-05 Score=75.68 Aligned_cols=76 Identities=20% Similarity=0.200 Sum_probs=67.7
Q ss_pred CcceeeeeccCCCCCHHHHHHHhcccCCeEEEEeCC----CCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003524 231 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP----HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 306 (813)
Q Consensus 231 ~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri~~----~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak~ 306 (813)
..+||||.|+...++++-|.++|-+-|.|..|.+.. +.+ ||||.|.++-...-|++.|||..+.+..|+|.+-.-
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 457999999999999999999999999999998732 234 999999999999999999999999999999988654
Q ss_pred C
Q 003524 307 G 307 (813)
Q Consensus 307 ~ 307 (813)
.
T Consensus 87 ~ 87 (267)
T KOG4454|consen 87 N 87 (267)
T ss_pred C
Confidence 3
No 151
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.39 E-value=0.00058 Score=60.18 Aligned_cols=68 Identities=21% Similarity=0.400 Sum_probs=48.2
Q ss_pred CEEEEcCCCCCCCHHHH----HHHHhhcC-CEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecC
Q 003524 148 RTLFVRNINSNVEDSEL----RALFEQYG-DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 220 (813)
Q Consensus 148 rtLfVgNLP~~vTeedL----~~lFs~fG-~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 220 (813)
..|+|.|||.+.+...| +.|+.-+| .|..| ..+.|+|.|.+.+.|++|.+.|+|..+.|++|.|.|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 46899999999987765 55666665 67776 24789999999999999999999999999999999974
No 152
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.26 E-value=0.00064 Score=63.15 Aligned_cols=70 Identities=29% Similarity=0.447 Sum_probs=44.9
Q ss_pred eeeeeccCCCCCHHHHHHHhcccCCeEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCC-----ccCCceEEEEec
Q 003524 234 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRS-----DIAGKRIKLEPS 304 (813)
Q Consensus 234 tLfV~NLp~~vteedL~~lFs~fG~I~~iri~~~srG~aFVeF~d~e~A~~Ai~~LnG~-----~i~Gr~I~V~~a 304 (813)
.|.|.+++..++.++|++.|+.||.|..|.+... ...|||+|.+.++|++|+..+.-. .+.+..++++.-
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL 77 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL 77 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT--SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence 5889999999999999999999999999998643 347999999999999999877543 566666666553
No 153
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.22 E-value=0.00036 Score=73.56 Aligned_cols=77 Identities=16% Similarity=0.304 Sum_probs=68.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE-----eCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeee
Q 003524 143 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 217 (813)
Q Consensus 143 ~e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 217 (813)
.+.+.+.+||+|+...+|.+++...|+.||.|..+. ..+..+||+||+|.+.+.++.|+. |++..|.++.+.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 445678999999999999999999999999997443 355689999999999999999999 99999999999988
Q ss_pred ecC
Q 003524 218 FSI 220 (813)
Q Consensus 218 ~a~ 220 (813)
+..
T Consensus 176 ~~r 178 (231)
T KOG4209|consen 176 LKR 178 (231)
T ss_pred eee
Confidence 754
No 154
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.02 E-value=0.0019 Score=69.52 Aligned_cols=76 Identities=22% Similarity=0.451 Sum_probs=62.8
Q ss_pred cceeeeeccCCCCCHHH----H--HHHhcccCCeEEEEeCCCC------ccE--EEEEEcCHHHHHHHHHHhCCCccCCc
Q 003524 232 QGTLVVFNLDPSVSNED----L--RQIFGAYGEVKEIRETPHK------RHH--KFIEFYDVRAAEAALKSLNRSDIAGK 297 (813)
Q Consensus 232 ~~tLfV~NLp~~vteed----L--~~lFs~fG~I~~iri~~~s------rG~--aFVeF~d~e~A~~Ai~~LnG~~i~Gr 297 (813)
.+-+||-+|++.+..|+ | .++|.+||+|+.|.+..+. .+. .||+|.+.++|.+||.+.+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 34689999999987776 2 3799999999999764321 122 49999999999999999999999999
Q ss_pred eEEEEecCCC
Q 003524 298 RIKLEPSRPG 307 (813)
Q Consensus 298 ~I~V~~ak~~ 307 (813)
.|+..|...+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999997654
No 155
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.62 E-value=0.0041 Score=50.58 Aligned_cols=52 Identities=21% Similarity=0.441 Sum_probs=43.1
Q ss_pred ceeeeeccCCCCCHHHHHHHhcccCCeEEEEeCCCCccEEEEEEcCHHHHHHHH
Q 003524 233 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAAL 286 (813)
Q Consensus 233 ~tLfV~NLp~~vteedL~~lFs~fG~I~~iri~~~srG~aFVeF~d~e~A~~Ai 286 (813)
+.|.|.+.+.+.. +++...|..||+|..+.++ ....+.+|+|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 4688999997766 4555688899999999986 34578999999999999985
No 156
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.56 E-value=0.0046 Score=56.93 Aligned_cols=74 Identities=22% Similarity=0.400 Sum_probs=54.3
Q ss_pred CcceeeeeccCCCCCHHHHHHHhcccCCeEEEE------------eCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCc-
Q 003524 231 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR------------ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK- 297 (813)
Q Consensus 231 ~~~tLfV~NLp~~vteedL~~lFs~fG~I~~ir------------i~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr- 297 (813)
....|.|.+.|+. ....|.+.|++||+|.+.. -......+..|+|+++.+|.+||. -||..+.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3457999999988 5577889999999998885 123346789999999999999998 699999985
Q ss_pred eEEEEecCC
Q 003524 298 RIKLEPSRP 306 (813)
Q Consensus 298 ~I~V~~ak~ 306 (813)
.+-|.+.++
T Consensus 83 mvGV~~~~~ 91 (100)
T PF05172_consen 83 MVGVKPCDP 91 (100)
T ss_dssp EEEEEE-HH
T ss_pred EEEEEEcHH
Confidence 555777643
No 157
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.53 E-value=0.0041 Score=67.05 Aligned_cols=75 Identities=24% Similarity=0.376 Sum_probs=61.9
Q ss_pred CCEEEEcCCCCCCCHHHH------HHHHhhcCCEEEEEeCCCc------ce--EEEEEEccHHHHHHHHHHhcCCccccc
Q 003524 147 SRTLFVRNINSNVEDSEL------RALFEQYGDIRTLYTACKH------RG--FVMISYYDIRAARTAMRALQNKPLRRR 212 (813)
Q Consensus 147 srtLfVgNLP~~vTeedL------~~lFs~fG~I~~v~~~~ks------rG--~AFV~F~d~e~A~~Ai~~Lng~~l~gr 212 (813)
..-+||-+||+.+-.+++ .++|.+||.|..|.+..+. .+ -.||+|.+.++|.+||.+.+|..+.||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 456899999999888773 3789999999998743321 12 249999999999999999999999999
Q ss_pred eeeeeecCC
Q 003524 213 KLDIHFSIP 221 (813)
Q Consensus 213 ~L~V~~a~p 221 (813)
.|+..|...
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999988754
No 158
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.52 E-value=0.0037 Score=69.49 Aligned_cols=67 Identities=33% Similarity=0.469 Sum_probs=56.2
Q ss_pred CCCcCCcceeeeeccCCCCCHHHHHHHhcccCCeEEEEeCCC------------------CccEEEEEEcCHHHHHHHHH
Q 003524 226 SDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH------------------KRHHKFIEFYDVRAAEAALK 287 (813)
Q Consensus 226 ~~~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri~~~------------------srG~aFVeF~d~e~A~~Ai~ 287 (813)
..+....++|.+.|||.+-.-+.|.+||+.+|.|+.||+-.. .+-+|+|+|+..+.|.+|.+
T Consensus 225 ~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 225 DEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 344567789999999999999999999999999999987221 14579999999999999999
Q ss_pred HhCCC
Q 003524 288 SLNRS 292 (813)
Q Consensus 288 ~LnG~ 292 (813)
.|+..
T Consensus 305 ~~~~e 309 (484)
T KOG1855|consen 305 LLNPE 309 (484)
T ss_pred hhchh
Confidence 88643
No 159
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.36 E-value=0.0034 Score=69.48 Aligned_cols=101 Identities=26% Similarity=0.349 Sum_probs=79.1
Q ss_pred ceeeeeccCCCCCHHHHHHHhccc--CCeEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCC-ccCCceEEEEecCCCcc
Q 003524 233 GTLVVFNLDPSVSNEDLRQIFGAY--GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRS-DIAGKRIKLEPSRPGGA 309 (813)
Q Consensus 233 ~tLfV~NLp~~vteedL~~lFs~f--G~I~~iri~~~srG~aFVeF~d~e~A~~Ai~~LnG~-~i~Gr~I~V~~ak~~~~ 309 (813)
..||++||.+.++..||+.+|... +--..+- -..||+||.+.|..-|.+|++.++|+ ++.|+++.|+.+-++.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl---~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL---VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee---eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 368999999999999999999854 1111111 23589999999999999999999997 88999999999988876
Q ss_pred cc--hhhhccchhccHHHHHHHHhhcCCC
Q 003524 310 RR--NLMLQLNQELEQDESRILQHQVGSP 336 (813)
Q Consensus 310 r~--~~~~ql~~~~~~~~l~~~f~~~Gsp 336 (813)
+. ..+++..+++..+-+..+..+||.+
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~v 107 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTV 107 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCH
Confidence 53 3556666777777777777777754
No 160
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.35 E-value=0.0096 Score=55.34 Aligned_cols=59 Identities=14% Similarity=0.253 Sum_probs=39.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcCC
Q 003524 148 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK 207 (813)
Q Consensus 148 rtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~ 207 (813)
+.|.|.+++..++.++|++.|++||+|..|... +...-|||.|.+.++|++|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~-~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFS-RGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE---TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEec-CCCCEEEEEECCcchHHHHHHHHHhc
Confidence 468899999999999999999999999999742 34457999999999999999977544
No 161
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.34 E-value=0.0079 Score=63.16 Aligned_cols=90 Identities=23% Similarity=0.345 Sum_probs=75.1
Q ss_pred HHHHHHHHHhcCCccccceeeeeecCCCCCCCCCcCCcceeeeeccCCCCCHHHHHHHhcccCCeEEE----EeCCCCcc
Q 003524 195 RAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI----RETPHKRH 270 (813)
Q Consensus 195 e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~vteedL~~lFs~fG~I~~i----ri~~~srG 270 (813)
.-|+.|..+|++....++.|.|.|+.. ..|+|.||..-++.+.|.+.|+.||.|... ...++..+
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~-----------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~ 73 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH-----------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTR 73 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc-----------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccc
Confidence 357788888999999999999999863 479999999999999999999999987553 33455667
Q ss_pred EEEEEEcCHHHHHHHHHHhCCCccC
Q 003524 271 HKFIEFYDVRAAEAALKSLNRSDIA 295 (813)
Q Consensus 271 ~aFVeF~d~e~A~~Ai~~LnG~~i~ 295 (813)
-++|+|...-.|.+|+..+.-.-+.
T Consensus 74 eg~v~~~~k~~a~~a~rr~~~~g~~ 98 (275)
T KOG0115|consen 74 EGIVEFAKKPNARKAARRCREGGFG 98 (275)
T ss_pred cchhhhhcchhHHHHHHHhccCccc
Confidence 7999999999999999987544333
No 162
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.32 E-value=0.009 Score=48.56 Aligned_cols=52 Identities=15% Similarity=0.404 Sum_probs=42.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEeCCCcceEEEEEEccHHHHHHHH
Q 003524 148 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAM 201 (813)
Q Consensus 148 rtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai 201 (813)
+.|-|.+.+++..+. +...|..||+|..+... ......+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 578899998776654 45588899999999865 45678999999999999985
No 163
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.26 E-value=0.0038 Score=68.32 Aligned_cols=78 Identities=24% Similarity=0.329 Sum_probs=69.1
Q ss_pred CcceeeeeccCCCCCHHHHHHHhcccCCeEEE-------------EeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCc
Q 003524 231 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI-------------RETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 297 (813)
Q Consensus 231 ~~~tLfV~NLp~~vteedL~~lFs~fG~I~~i-------------ri~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr 297 (813)
...+|||.+|+..+++.+|.++|.++|.|+.= +.+...|+-|.|.|.|...|+.|+.-++++.+.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 44689999999999999999999999988653 23667789999999999999999999999999999
Q ss_pred eEEEEecCCCc
Q 003524 298 RIKLEPSRPGG 308 (813)
Q Consensus 298 ~I~V~~ak~~~ 308 (813)
.|+|.++..+.
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99999987654
No 164
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.07 E-value=0.0033 Score=65.85 Aligned_cols=68 Identities=29% Similarity=0.522 Sum_probs=58.7
Q ss_pred CcceeeeeccCCCCCHHHHHHHhcccCCeEEEEeCCCC-------------cc----EEEEEEcCHHHHHHHHHHhCCCc
Q 003524 231 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHK-------------RH----HKFIEFYDVRAAEAALKSLNRSD 293 (813)
Q Consensus 231 ~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri~~~s-------------rG----~aFVeF~d~e~A~~Ai~~LnG~~ 293 (813)
..+.||+++||+.+....|+++|+.||.|-.|.+.+.. .. -|.|+|.+...|.+....||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 56799999999999999999999999999998663321 11 27899999999999999999999
Q ss_pred cCCce
Q 003524 294 IAGKR 298 (813)
Q Consensus 294 i~Gr~ 298 (813)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99964
No 165
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.90 E-value=0.018 Score=67.31 Aligned_cols=71 Identities=20% Similarity=0.303 Sum_probs=61.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhcCCEE-EEE----eCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeee
Q 003524 148 RTLFVRNINSNVEDSELRALFEQYGDIR-TLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 218 (813)
Q Consensus 148 rtLfVgNLP~~vTeedL~~lFs~fG~I~-~v~----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 218 (813)
+.|-+.|+|++++-+||.++|..|-.+- +|+ ..++..|-|.|.|++.++|.+|...|+++.|..+++++.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4788999999999999999999985432 121 5788889999999999999999999999999999988764
No 166
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.69 E-value=0.0094 Score=65.32 Aligned_cols=77 Identities=21% Similarity=0.277 Sum_probs=68.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE-------------eCCCcceEEEEEEccHHHHHHHHHHhcCCcccc
Q 003524 145 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-------------TACKHRGFVMISYYDIRAARTAMRALQNKPLRR 211 (813)
Q Consensus 145 ~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~-------------~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~g 211 (813)
...-+|||-+||..+++.+|.++|.++|.|..=+ .+.+.||-|.|.|.|...|+.|+.-++++.+.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 4457899999999999999999999999886432 467899999999999999999999999999999
Q ss_pred ceeeeeecCC
Q 003524 212 RKLDIHFSIP 221 (813)
Q Consensus 212 r~L~V~~a~p 221 (813)
.+|+|..+..
T Consensus 144 n~ikvs~a~~ 153 (351)
T KOG1995|consen 144 NTIKVSLAER 153 (351)
T ss_pred CCchhhhhhh
Confidence 9998887753
No 167
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.68 E-value=0.01 Score=66.12 Aligned_cols=75 Identities=24% Similarity=0.374 Sum_probs=59.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEeC----------CC--------cceEEEEEEccHHHHHHHHHHh
Q 003524 143 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA----------CK--------HRGFVMISYYDIRAARTAMRAL 204 (813)
Q Consensus 143 ~e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~~----------~k--------srG~AFV~F~d~e~A~~Ai~~L 204 (813)
.+-++++|.+-|||.+-.-+-|.++|+.+|.|..|++- +. .+-+|+|+|...+.|.+|.+.|
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 44589999999999999999999999999999998731 11 2558999999999999999977
Q ss_pred cCCccccceeeee
Q 003524 205 QNKPLRRRKLDIH 217 (813)
Q Consensus 205 ng~~l~gr~L~V~ 217 (813)
+...-...-|+|.
T Consensus 307 ~~e~~wr~glkvk 319 (484)
T KOG1855|consen 307 NPEQNWRMGLKVK 319 (484)
T ss_pred chhhhhhhcchhh
Confidence 6544433334443
No 168
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.65 E-value=0.042 Score=63.21 Aligned_cols=72 Identities=19% Similarity=0.402 Sum_probs=56.5
Q ss_pred CCEEEEcCCCCCCC------HHHHHHHHhhcCCEEEEE----eCCCcceEEEEEEccHHHHHHHHHHhcCCccc-cceee
Q 003524 147 SRTLFVRNINSNVE------DSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRKLD 215 (813)
Q Consensus 147 srtLfVgNLP~~vT------eedL~~lFs~fG~I~~v~----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~-gr~L~ 215 (813)
...|+|-|+|.--. ..-|.++|+++|+|..+. ..+..+||.|++|.+.++|+.|++.|||+.|. .+++.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 45677888875322 123668899999998887 35779999999999999999999999998875 56666
Q ss_pred eee
Q 003524 216 IHF 218 (813)
Q Consensus 216 V~~ 218 (813)
|..
T Consensus 138 v~~ 140 (698)
T KOG2314|consen 138 VRL 140 (698)
T ss_pred eeh
Confidence 653
No 169
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=95.58 E-value=0.0065 Score=67.21 Aligned_cols=73 Identities=19% Similarity=0.401 Sum_probs=60.0
Q ss_pred CcceeEEeecCCCCCCHHHHHHHHHhhCCCcccEEEee-ecccccce-eEEEEEecCCcccHHHHHHHhcCCcccC
Q 003524 647 DTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLP-IDFKNKCN-VGYAFINMLSPLHIIPFYEAFNGKKWEK 720 (813)
Q Consensus 647 d~rTTvMirNIPnk~~~~~l~~~id~~~~~~ydf~Ylp-~df~~~~n-~gyaFin~~~~~~~~~f~~~f~~~~w~~ 720 (813)
+....|.||++|+++|...|++.||- +...+.|.|+- -|+....+ .+.|||||..+.++..|...|+|+..=.
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p-~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINP-FPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCC-CccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 34567999999999999999999999 77788888765 55543322 5569999999999999999999987654
No 170
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.53 E-value=0.0068 Score=63.74 Aligned_cols=63 Identities=30% Similarity=0.381 Sum_probs=51.1
Q ss_pred HHHHHHhc-ccCCeEEEEeC----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcc
Q 003524 247 EDLRQIFG-AYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 309 (813)
Q Consensus 247 edL~~lFs-~fG~I~~iri~----~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak~~~~ 309 (813)
|||...|+ +||+|+++.+- ..-+|-+||.|...++|++|+..||+..+.|++|..++..-..-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~ 150 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDF 150 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCch
Confidence 45555556 89999988552 23367799999999999999999999999999999999765443
No 171
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.26 E-value=0.063 Score=52.51 Aligned_cols=74 Identities=31% Similarity=0.430 Sum_probs=53.5
Q ss_pred CcceeeeeccCC-----CCCH----HHHHHHhcccCCeEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 003524 231 NQGTLVVFNLDP-----SVSN----EDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKL 301 (813)
Q Consensus 231 ~~~tLfV~NLp~-----~vte----edL~~lFs~fG~I~~iri~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V 301 (813)
...|+.|.=+.+ ..-. .+|.+.|..||+|.=||+.+ +.-+|+|.+-+.|.+|+. |+|.++.|+.|+|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~---~~mwVTF~dg~sALaals-~dg~~v~g~~l~i 101 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG---DTMWVTFRDGQSALAALS-LDGIQVNGRTLKI 101 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET---TCEEEEESSCHHHHHHHH-GCCSEETTEEEEE
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC---CeEEEEECccHHHHHHHc-cCCcEECCEEEEE
Confidence 456777765541 1222 36788899999999999875 458999999999999998 9999999999999
Q ss_pred EecCCCc
Q 003524 302 EPSRPGG 308 (813)
Q Consensus 302 ~~ak~~~ 308 (813)
+...|.-
T Consensus 102 ~LKtpdW 108 (146)
T PF08952_consen 102 RLKTPDW 108 (146)
T ss_dssp EE-----
T ss_pred EeCCccH
Confidence 9977654
No 172
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.25 E-value=0.036 Score=63.78 Aligned_cols=72 Identities=19% Similarity=0.248 Sum_probs=56.9
Q ss_pred CcceeeeeccCCCC--C----HHHHHHHhcccCCeEEEEe----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCC-ceE
Q 003524 231 NQGTLVVFNLDPSV--S----NEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG-KRI 299 (813)
Q Consensus 231 ~~~tLfV~NLp~~v--t----eedL~~lFs~fG~I~~iri----~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~G-r~I 299 (813)
-...|+|.|+|.-- . ..-|.++|+++|+|....+ .+..+||.|++|.+.++|+.|++.|||+.+.- .+.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 45689999998532 1 2346689999999988765 35679999999999999999999999998864 566
Q ss_pred EEE
Q 003524 300 KLE 302 (813)
Q Consensus 300 ~V~ 302 (813)
.|.
T Consensus 137 ~v~ 139 (698)
T KOG2314|consen 137 FVR 139 (698)
T ss_pred Eee
Confidence 654
No 173
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.04 E-value=0.016 Score=60.87 Aligned_cols=68 Identities=21% Similarity=0.414 Sum_probs=58.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEeC-------------CCcce----EEEEEEccHHHHHHHHHHhcCCc
Q 003524 146 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA-------------CKHRG----FVMISYYDIRAARTAMRALQNKP 208 (813)
Q Consensus 146 ~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~~-------------~ksrG----~AFV~F~d~e~A~~Ai~~Lng~~ 208 (813)
.+-.||+++||+.+.-.-|+++|++||.|-.|+.. +.++. -|.|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 46789999999999999999999999999998731 12222 28899999999999999999999
Q ss_pred cccce
Q 003524 209 LRRRK 213 (813)
Q Consensus 209 l~gr~ 213 (813)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 174
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.66 E-value=0.06 Score=57.52 Aligned_cols=61 Identities=20% Similarity=0.248 Sum_probs=49.6
Q ss_pred HHHHHHHhcccCCeEEEEeC---CCC---ccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003524 246 NEDLRQIFGAYGEVKEIRET---PHK---RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 306 (813)
Q Consensus 246 eedL~~lFs~fG~I~~iri~---~~s---rG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak~ 306 (813)
++++++.+++||+|..|-+. +.. .--.||+|...++|.+|+-.|||+.|+|+.++..|..-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 46788999999999887541 111 11379999999999999999999999999999888654
No 175
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.58 E-value=0.066 Score=49.38 Aligned_cols=73 Identities=11% Similarity=0.161 Sum_probs=52.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE------------eCCCcceEEEEEEccHHHHHHHHHHhcCCccccce
Q 003524 146 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY------------TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 213 (813)
Q Consensus 146 ~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~------------~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~ 213 (813)
..+-|.|-+.|+. ....+.+.|++||+|.+.. ..........|.|.+..+|++|+. -||..+.|.-
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 4567888899987 5677888999999998875 112345689999999999999999 5999998764
Q ss_pred -eeeeecC
Q 003524 214 -LDIHFSI 220 (813)
Q Consensus 214 -L~V~~a~ 220 (813)
+-|.+..
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4466664
No 176
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.53 E-value=0.18 Score=48.94 Aligned_cols=83 Identities=19% Similarity=0.258 Sum_probs=62.9
Q ss_pred ccCCCCCCCCCCCCEEEEcCCCCCCCH-HHH---HHHHhhcCCEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcCCccc
Q 003524 135 TVAGEHPYGEHPSRTLFVRNINSNVED-SEL---RALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR 210 (813)
Q Consensus 135 ~v~g~~~~~e~~srtLfVgNLP~~vTe-edL---~~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~ 210 (813)
...+.+...+.+-.||.|+=|..++.. +|| ...++.||+|.+|...| +--|.|.|+|..+|-+|+.+++. ..-
T Consensus 74 c~lwkk~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s-~~p 150 (166)
T PF15023_consen 74 CHLWKKNTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQS-RAP 150 (166)
T ss_pred ehhhcccCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcC-CCC
Confidence 334455566788899999988777653 444 45567899999997655 45699999999999999999876 556
Q ss_pred cceeeeeecC
Q 003524 211 RRKLDIHFSI 220 (813)
Q Consensus 211 gr~L~V~~a~ 220 (813)
|..+.+.|..
T Consensus 151 gtm~qCsWqq 160 (166)
T PF15023_consen 151 GTMFQCSWQQ 160 (166)
T ss_pred CceEEeeccc
Confidence 7777777654
No 177
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.48 E-value=0.12 Score=58.28 Aligned_cols=81 Identities=30% Similarity=0.349 Sum_probs=70.9
Q ss_pred ceeEEeecCCCCCCHHHHHHHHHhhCCCcccEEEeeecccccceeEEEEEecCCcccHHHHHHHhcCCcccCCCCccEEE
Q 003524 649 RTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEAFNGKKWEKFNSEKVAS 728 (813)
Q Consensus 649 rTTvMirNIPnk~~~~~l~~~id~~~~~~ydf~Ylp~df~~~~n~gyaFin~~~~~~~~~f~~~f~~~~w~~~~s~k~~~ 728 (813)
-|+|-|=-||+.+|.-+|+..+.....---|+.-++ | .--|.--+-|-|.+..+|..||+.|||+.+...-.+ +|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivR-d--~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e-~Ch 149 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVR-D--GMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPE-VCH 149 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEee-c--CCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCcc-cee
Confidence 588999999999999999999998888888888888 3 445555699999999999999999999999887766 999
Q ss_pred EEeee
Q 003524 729 LAYAR 733 (813)
Q Consensus 729 ~~~A~ 733 (813)
|-|+.
T Consensus 150 ll~V~ 154 (493)
T KOG0804|consen 150 LLYVD 154 (493)
T ss_pred EEEEE
Confidence 99964
No 178
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.47 E-value=0.23 Score=46.58 Aligned_cols=85 Identities=19% Similarity=0.285 Sum_probs=65.8
Q ss_pred cceeEEeecCCCCCCHHHHHHHHHhhCCCcccEEEeeecccccceeEEEEEecCCcccHHHHHHHhcCCcccCCCCccEE
Q 003524 648 TRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEAFNGKKWEKFNSEKVA 727 (813)
Q Consensus 648 ~rTTvMirNIPnk~~~~~l~~~id~~~~~~ydf~Ylp~df~~~~n~gyaFin~~~~~~~~~f~~~f~~~~w~~~~s~k~~ 727 (813)
.+|+|-+=-+|+.++..+++..+-+.+.....-+.+--|.. -|.-=+-|-|.++++|..||+.|||++.+..-. -+|
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEp-E~C 87 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNSLEP-ETC 87 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCCCCC-cee
Confidence 44666666899999988777666677776666666655643 466669999999999999999999999987765 559
Q ss_pred EEEe-eecc
Q 003524 728 SLAY-ARIQ 735 (813)
Q Consensus 728 ~~~~-A~iQ 735 (813)
.|.| .+||
T Consensus 88 hvvfV~~Ve 96 (110)
T PF07576_consen 88 HVVFVKSVE 96 (110)
T ss_pred EEEEEEEEE
Confidence 9999 4555
No 179
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.10 E-value=0.027 Score=59.37 Aligned_cols=58 Identities=22% Similarity=0.335 Sum_probs=47.7
Q ss_pred HHHHHHh-hcCCEEEEEe----CCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecC
Q 003524 163 ELRALFE-QYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 220 (813)
Q Consensus 163 dL~~lFs-~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 220 (813)
+|...|+ +||+|+.+++ .-.-.|-+||.|..+++|++|+..||+..+.|++|...++.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 4444455 8999998852 33457889999999999999999999999999999988763
No 180
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=93.49 E-value=0.069 Score=58.17 Aligned_cols=71 Identities=15% Similarity=0.271 Sum_probs=58.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcC--CEEEEE-----eCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeee
Q 003524 147 SRTLFVRNINSNVEDSELRALFEQYG--DIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 217 (813)
Q Consensus 147 srtLfVgNLP~~vTeedL~~lFs~fG--~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 217 (813)
.-.+||+||-+.+|++||.+.+...| .+.+++ ..+.+||||+|...+..+.++-++.|-.+.|.|..-.|-
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 45799999999999999998887655 233332 578999999999999999999999999999988765544
No 181
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.37 E-value=0.29 Score=47.59 Aligned_cols=75 Identities=20% Similarity=0.297 Sum_probs=57.9
Q ss_pred cCCcceeeeeccCCCC-CHHHH---HHHhcccCCeEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003524 229 DLNQGTLVVFNLDPSV-SNEDL---RQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 304 (813)
Q Consensus 229 ~~~~~tLfV~NLp~~v-teedL---~~lFs~fG~I~~iri~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~a 304 (813)
+..-.+|.|+=|..++ ..+|| .+.++.||+|.+|...| +..|.|.|.|..+|-+|+.++.. ...|..+.+.|-
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 4455688887776665 23444 45667899999998876 45799999999999999998876 566888888885
Q ss_pred CC
Q 003524 305 RP 306 (813)
Q Consensus 305 k~ 306 (813)
.+
T Consensus 160 qr 161 (166)
T PF15023_consen 160 QR 161 (166)
T ss_pred cc
Confidence 43
No 182
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=92.49 E-value=0.091 Score=60.90 Aligned_cols=76 Identities=20% Similarity=0.285 Sum_probs=62.6
Q ss_pred cceeeeeccCCCCCHHHHHHHhcc-cCCeEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCcc---CCceEEEEecCCC
Q 003524 232 QGTLVVFNLDPSVSNEDLRQIFGA-YGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDI---AGKRIKLEPSRPG 307 (813)
Q Consensus 232 ~~tLfV~NLp~~vteedL~~lFs~-fG~I~~iri~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i---~Gr~I~V~~ak~~ 307 (813)
.+.|+|.||-.-+|.-+|+.++.+ .|.|.+..+ .+-+.+|||.|.+.++|.+.+.+|||..+ +++.|.+.|....
T Consensus 444 SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm-DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~d 522 (718)
T KOG2416|consen 444 SNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM-DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRAD 522 (718)
T ss_pred cceEeeecccccchHHHHHHHHhhccCchHHHHH-HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecchh
Confidence 468999999999999999999995 555666533 34467899999999999999999999865 3589999998654
Q ss_pred c
Q 003524 308 G 308 (813)
Q Consensus 308 ~ 308 (813)
.
T Consensus 523 e 523 (718)
T KOG2416|consen 523 E 523 (718)
T ss_pred H
Confidence 3
No 183
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.37 E-value=0.23 Score=50.78 Aligned_cols=63 Identities=17% Similarity=0.275 Sum_probs=45.9
Q ss_pred CHHHHHHHhcccCCeEEEEeCCCCccEEEEEEcCHHHHHHHHHHhC--CCccCCceEEEEecCCCc
Q 003524 245 SNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLN--RSDIAGKRIKLEPSRPGG 308 (813)
Q Consensus 245 teedL~~lFs~fG~I~~iri~~~srG~aFVeF~d~e~A~~Ai~~Ln--G~~i~Gr~I~V~~ak~~~ 308 (813)
..+.|+++|..|+.+..+...+.- +-..|.|.+.++|.+|...|+ +..+.|..++|-|+.+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF-rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF-RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT-TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC-CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 458899999999998887654433 248899999999999999999 999999999999996544
No 184
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=91.91 E-value=0.16 Score=56.36 Aligned_cols=71 Identities=23% Similarity=0.529 Sum_probs=58.9
Q ss_pred ceeeeeccCCCCCHHHHHHHhcccCCeEEEEeCCC--------CccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003524 233 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH--------KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 304 (813)
Q Consensus 233 ~tLfV~NLp~~vteedL~~lFs~fG~I~~iri~~~--------srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~a 304 (813)
+.|.|.||.+.+|.++++.+|.-.|+|.++++.+. ....|||.|.|...+..|.. |..+.+-++.|.|-.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 47999999999999999999999999999987542 23479999999999888865 7777777777777654
No 185
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=91.64 E-value=0.4 Score=47.04 Aligned_cols=74 Identities=24% Similarity=0.390 Sum_probs=52.2
Q ss_pred CCCCEEEEcCCCC------CCCH---HHHHHHHhhcCCEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcCCccccceee
Q 003524 145 HPSRTLFVRNINS------NVED---SELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 215 (813)
Q Consensus 145 ~~srtLfVgNLP~------~vTe---edL~~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~ 215 (813)
++..||.|.=+.+ ...+ .+|.+.|..||+|.-++..+ +.-+|+|.+-+.|-+|+. ++|..+.|+.|+
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~---~~mwVTF~dg~sALaals-~dg~~v~g~~l~ 100 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG---DTMWVTFRDGQSALAALS-LDGIQVNGRTLK 100 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET---TCEEEEESSCHHHHHHHH-GCCSEETTEEEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC---CeEEEEECccHHHHHHHc-cCCcEECCEEEE
Confidence 3567777765551 2222 36778889999998887433 468999999999999999 899999999999
Q ss_pred eeecCCC
Q 003524 216 IHFSIPK 222 (813)
Q Consensus 216 V~~a~pk 222 (813)
|+...|.
T Consensus 101 i~LKtpd 107 (146)
T PF08952_consen 101 IRLKTPD 107 (146)
T ss_dssp EEE----
T ss_pred EEeCCcc
Confidence 9986654
No 186
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=91.60 E-value=0.4 Score=55.43 Aligned_cols=96 Identities=15% Similarity=0.179 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcCCccccceeeeeecCCCCCCCCCcCCcceeeeeccCCCCCHHHHHHHhcc--cCCeEEEEeCCCCccEE
Q 003524 195 RAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGA--YGEVKEIRETPHKRHHK 272 (813)
Q Consensus 195 e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~vteedL~~lFs~--fG~I~~iri~~~srG~a 272 (813)
+-..++++...+..+..+-.+|... .+.+.+.++-||..+..|+++.||+. +-++++|.+.-+. --
T Consensus 148 dLI~Evlresp~VqvDekgekVrp~----------~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~--nW 215 (684)
T KOG2591|consen 148 DLIVEVLRESPNVQVDEKGEKVRPN----------HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND--NW 215 (684)
T ss_pred HHHHHHHhcCCCceeccCccccccC----------cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC--ce
Confidence 3334455555555555554444422 24567889999999999999999984 6788888774332 37
Q ss_pred EEEEcCHHHHHHHHHHhCC--CccCCceEEEE
Q 003524 273 FIEFYDVRAAEAALKSLNR--SDIAGKRIKLE 302 (813)
Q Consensus 273 FVeF~d~e~A~~Ai~~LnG--~~i~Gr~I~V~ 302 (813)
||+|++..||+.|.+.|.. ++|.||.|...
T Consensus 216 yITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 216 YITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred EEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 9999999999999998864 47778776543
No 187
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=91.54 E-value=0.17 Score=58.69 Aligned_cols=77 Identities=21% Similarity=0.336 Sum_probs=60.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHh-hcCCEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcCCcc---ccceeeee
Q 003524 142 YGEHPSRTLFVRNINSNVEDSELRALFE-QYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL---RRRKLDIH 217 (813)
Q Consensus 142 ~~e~~srtLfVgNLP~~vTeedL~~lFs-~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l---~gr~L~V~ 217 (813)
.....+..|+|.||-.-.|.-+|+.++. ..|.|+..++ .+-+..|||.|.+.++|.....+|+|..+ ..+.|.+.
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm-DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM-DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHHHH-HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 3456788999999999999999999999 5566666643 34567899999999999999999998665 23444444
Q ss_pred ec
Q 003524 218 FS 219 (813)
Q Consensus 218 ~a 219 (813)
|.
T Consensus 518 f~ 519 (718)
T KOG2416|consen 518 FV 519 (718)
T ss_pred ec
Confidence 43
No 188
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=90.90 E-value=0.86 Score=40.58 Aligned_cols=54 Identities=13% Similarity=0.278 Sum_probs=41.7
Q ss_pred ceeeeeccCCCCCHHHHHHHhcccCCeEEEEeCCCCccEEEEEEcCHHHHHHHHHHhC
Q 003524 233 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLN 290 (813)
Q Consensus 233 ~tLfV~NLp~~vteedL~~lFs~fG~I~~iri~~~srG~aFVeF~d~e~A~~Ai~~Ln 290 (813)
...+|. .|..+...||.++|++||.|.---+.. .-|||...+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~d---TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIND---TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEECT---TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcC---CcEEEEeecHHHHHHHHHHhc
Confidence 345555 999999999999999999986666643 359999999999999999886
No 189
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=90.63 E-value=0.22 Score=54.46 Aligned_cols=74 Identities=15% Similarity=0.143 Sum_probs=60.6
Q ss_pred ceeeeeccCCCCCHHHHHHHhcccC--CeEEE-----EeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003524 233 GTLVVFNLDPSVSNEDLRQIFGAYG--EVKEI-----RETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 305 (813)
Q Consensus 233 ~tLfV~NLp~~vteedL~~lFs~fG--~I~~i-----ri~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak 305 (813)
-++||+||-+.+|++||.+.+...| .+.++ |..+.+||||.|-..+..+.++-++.|-.++|.|..-.|--..
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 4799999999999999999888766 23333 3477899999999999999999999999999999766665443
Q ss_pred C
Q 003524 306 P 306 (813)
Q Consensus 306 ~ 306 (813)
.
T Consensus 161 K 161 (498)
T KOG4849|consen 161 K 161 (498)
T ss_pred h
Confidence 3
No 190
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=90.56 E-value=1 Score=37.89 Aligned_cols=54 Identities=24% Similarity=0.339 Sum_probs=42.1
Q ss_pred cceeeeeccCCCCCHHHHHHHhccc----CCeEEEEeCCCCccEEEEEEcCHHHHHHHHHHh
Q 003524 232 QGTLVVFNLDPSVSNEDLRQIFGAY----GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSL 289 (813)
Q Consensus 232 ~~tLfV~NLp~~vteedL~~lFs~f----G~I~~iri~~~srG~aFVeF~d~e~A~~Ai~~L 289 (813)
...|+|++++ +++.++|+.+|..| + ...|...... -|=|.|.+.+.|.+|+.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt--ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT--SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC--cEEEEECCHHHHHHHHHcC
Confidence 3579999996 58999999999999 4 3355433322 3789999999999999865
No 191
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=89.82 E-value=0.62 Score=53.93 Aligned_cols=78 Identities=19% Similarity=0.251 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHh--hcCCEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcC--Cccccce
Q 003524 138 GEHPYGEHPSRTLFVRNINSNVEDSELRALFE--QYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRK 213 (813)
Q Consensus 138 g~~~~~e~~srtLfVgNLP~~vTeedL~~lFs--~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng--~~l~gr~ 213 (813)
+++.......|.|+++-||..+-+|+++.||+ .+-++.+|... ...--||+|++..||+.|.+.|.. +.|.|++
T Consensus 166 gekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa--~N~nWyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 166 GEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFA--HNDNWYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred ccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeee--ecCceEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 33333444567788999999999999999998 46677777521 122379999999999999998865 5577777
Q ss_pred eeee
Q 003524 214 LDIH 217 (813)
Q Consensus 214 L~V~ 217 (813)
|..+
T Consensus 244 ImAR 247 (684)
T KOG2591|consen 244 IMAR 247 (684)
T ss_pred hhhh
Confidence 6544
No 192
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=88.74 E-value=0.57 Score=47.61 Aligned_cols=75 Identities=11% Similarity=0.141 Sum_probs=50.2
Q ss_pred CcceeeeeccCCCCCHHHHHHHhcc-cCCe---EEEE--eC-----CCCccEEEEEEcCHHHHHHHHHHhCCCccCC---
Q 003524 231 NQGTLVVFNLDPSVSNEDLRQIFGA-YGEV---KEIR--ET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAG--- 296 (813)
Q Consensus 231 ~~~tLfV~NLp~~vteedL~~lFs~-fG~I---~~ir--i~-----~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~G--- 296 (813)
....|.|++||+.+|++++.+.+.. ++.. ..+. .. ...-.-|||.|.+.+++..-...++|+.+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3458999999999999999998887 6665 3343 11 1112349999999999999999999986643
Q ss_pred --ceEEEEecC
Q 003524 297 --KRIKLEPSR 305 (813)
Q Consensus 297 --r~I~V~~ak 305 (813)
.+..|++|-
T Consensus 86 ~~~~~~VE~Ap 96 (176)
T PF03467_consen 86 NEYPAVVEFAP 96 (176)
T ss_dssp -EEEEEEEE-S
T ss_pred CCcceeEEEcc
Confidence 355666663
No 193
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=88.63 E-value=0.81 Score=49.23 Aligned_cols=60 Identities=15% Similarity=0.257 Sum_probs=48.3
Q ss_pred HHHHHHHHhhcCCEEEEEeC---C---CcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecC
Q 003524 161 DSELRALFEQYGDIRTLYTA---C---KHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 220 (813)
Q Consensus 161 eedL~~lFs~fG~I~~v~~~---~---ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 220 (813)
++++++.+++||.|..|.+. + ...--.||+|...++|.+|+-.|||..++|+.+...|..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 35678889999999887631 1 112248999999999999999999999999998877753
No 194
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.57 E-value=1.6 Score=47.36 Aligned_cols=73 Identities=22% Similarity=0.285 Sum_probs=57.7
Q ss_pred cceeeeeccCCCCCHHHHHHHhcccCCeEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCc-eEEEEecCCC
Q 003524 232 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK-RIKLEPSRPG 307 (813)
Q Consensus 232 ~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr-~I~V~~ak~~ 307 (813)
+.-|.|.++++.- -.-|..+|++||+|.+.... ....+-+|+|.++-+|.+||. -||+.|+|. -|-|+.+..+
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCH
Confidence 5568888988764 35678899999999887654 666799999999999999998 699999884 4556665444
No 195
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=87.78 E-value=2.5 Score=35.65 Aligned_cols=51 Identities=22% Similarity=0.417 Sum_probs=40.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhc----CC--EEEEEeCCCcceEEEEEEccHHHHHHHHHHh
Q 003524 148 RTLFVRNINSNVEDSELRALFEQY----GD--IRTLYTACKHRGFVMISYYDIRAARTAMRAL 204 (813)
Q Consensus 148 rtLfVgNLP~~vTeedL~~lFs~f----G~--I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~L 204 (813)
.+|+|+++. +++.++|+.+|..| ++ |+-|. . .-|-|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWId--D---tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWID--D---TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEec--C---CcEEEEECCHHHHHHHHHcC
Confidence 579999995 69999999999999 43 33332 2 24789999999999999864
No 196
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=87.00 E-value=0.27 Score=53.91 Aligned_cols=78 Identities=15% Similarity=0.307 Sum_probs=61.5
Q ss_pred cceeeeeccCCCCCHHHHH---HHhcccCCeEEEEeCCCC--------ccEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 003524 232 QGTLVVFNLDPSVSNEDLR---QIFGAYGEVKEIRETPHK--------RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 300 (813)
Q Consensus 232 ~~tLfV~NLp~~vteedL~---~lFs~fG~I~~iri~~~s--------rG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~ 300 (813)
..-+||-+|+..+..+++. +.|.+||.|..|...... ..-++|+|...++|..||...+|...+|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 4567888888887555543 589999999999764322 11389999999999999999999999999999
Q ss_pred EEecCCCcc
Q 003524 301 LEPSRPGGA 309 (813)
Q Consensus 301 V~~ak~~~~ 309 (813)
..+...+-.
T Consensus 157 a~~gttkyc 165 (327)
T KOG2068|consen 157 ASLGTTKYC 165 (327)
T ss_pred HhhCCCcch
Confidence 888776543
No 197
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=84.93 E-value=2.4 Score=37.87 Aligned_cols=55 Identities=15% Similarity=0.298 Sum_probs=42.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcC
Q 003524 148 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 206 (813)
Q Consensus 148 rtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng 206 (813)
...+|. .|..+...||.++|+.||.|.--.+.. .-|||...+.+.|..|+..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~d---TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIND---TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEECT---TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcC---CcEEEEeecHHHHHHHHHHhcc
Confidence 455666 999999999999999999987655533 4699999999999999997753
No 198
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=82.82 E-value=0.76 Score=52.39 Aligned_cols=73 Identities=21% Similarity=0.239 Sum_probs=58.5
Q ss_pred eeeeccCCCC-CHHHHHHHhcccCCeEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcc
Q 003524 235 LVVFNLDPSV-SNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 309 (813)
Q Consensus 235 LfV~NLp~~v-teedL~~lFs~fG~I~~iri~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ak~~~~ 309 (813)
|-+.-.+..+ +-++|...|.+||+|..|.+.-. .-.|.|+|.+..+|-+|-. .++..|+++.|+|.|-++...
T Consensus 375 l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~~ 448 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSPV 448 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhc-cccceecCceeEEEEecCCcc
Confidence 3333344444 56889999999999999987443 4569999999999988865 799999999999999988663
No 199
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=82.53 E-value=0.6 Score=51.28 Aligned_cols=76 Identities=18% Similarity=0.271 Sum_probs=60.1
Q ss_pred CCEEEEcCCCCCCCHHHHH---HHHhhcCCEEEEEeCCCc--------ceEEEEEEccHHHHHHHHHHhcCCccccceee
Q 003524 147 SRTLFVRNINSNVEDSELR---ALFEQYGDIRTLYTACKH--------RGFVMISYYDIRAARTAMRALQNKPLRRRKLD 215 (813)
Q Consensus 147 srtLfVgNLP~~vTeedL~---~lFs~fG~I~~v~~~~ks--------rG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~ 215 (813)
..-+||-+|+..+.++++. +.|.+||.|..|.+.+.. -.-++|+|...++|..||...+|..+.|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3567888999887666554 578899999998743321 11389999999999999999999999999988
Q ss_pred eeecCCC
Q 003524 216 IHFSIPK 222 (813)
Q Consensus 216 V~~a~pk 222 (813)
..+..++
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 8877654
No 200
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=80.41 E-value=2.7 Score=43.13 Aligned_cols=62 Identities=19% Similarity=0.297 Sum_probs=44.8
Q ss_pred CHHHHHHHHhhcCCEEEEEeCCCcceEEEEEEccHHHHHHHHHHhc--CCccccceeeeeecCCC
Q 003524 160 EDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ--NKPLRRRKLDIHFSIPK 222 (813)
Q Consensus 160 TeedL~~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Ln--g~~l~gr~L~V~~a~pk 222 (813)
..+.|+++|..|+.+..+..- ++-+-..|.|.+.++|.+|...|+ +..+.|..++|.|+.+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L-~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPL-KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEE-TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEc-CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 457899999999988877643 344458899999999999999999 89999999999998543
No 201
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=80.11 E-value=1.1 Score=54.27 Aligned_cols=73 Identities=16% Similarity=0.242 Sum_probs=60.2
Q ss_pred eeeeeccCCCCCHHHHHHHhcccCCeEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCcc--CCceEEEEecCCC
Q 003524 234 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDI--AGKRIKLEPSRPG 307 (813)
Q Consensus 234 tLfV~NLp~~vteedL~~lFs~fG~I~~iri~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i--~Gr~I~V~~ak~~ 307 (813)
+.++.|.+-..+-.-|..+|.+||.|.+++... .-..|.|+|...+.|..|+++|+|+++ -|-+.+|.+|+.-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr-~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLR-DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecc-cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 445566666778889999999999999997632 235799999999999999999999966 4788999998864
No 202
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=79.73 E-value=1.9 Score=45.91 Aligned_cols=59 Identities=20% Similarity=0.288 Sum_probs=51.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhcCCEEEEE----eCCCcceEEEEEEccHHHHHHHHHHhcC
Q 003524 148 RTLFVRNINSNVEDSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQN 206 (813)
Q Consensus 148 rtLfVgNLP~~vTeedL~~lFs~fG~I~~v~----~~~ksrG~AFV~F~d~e~A~~Ai~~Lng 206 (813)
..|||.||..-++-+.|..-|+.||+|.... ..++..+-++|.|...-.|.+|.+.+.-
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhcc
Confidence 6899999999999999999999999987533 4677888899999999999999987643
No 203
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=79.58 E-value=2.2 Score=38.47 Aligned_cols=67 Identities=15% Similarity=0.229 Sum_probs=45.7
Q ss_pred EEEEEccHHHHHHHHHHhcC--CccccceeeeeecCCCCCC-----CCCcCCcceeeeeccCCCCCHHHHHHHhc
Q 003524 187 VMISYYDIRAARTAMRALQN--KPLRRRKLDIHFSIPKDNP-----SDKDLNQGTLVVFNLDPSVSNEDLRQIFG 254 (813)
Q Consensus 187 AFV~F~d~e~A~~Ai~~Lng--~~l~gr~L~V~~a~pk~~~-----~~~~~~~~tLfV~NLp~~vteedL~~lFs 254 (813)
|.|+|.+..-|++.++ +.. ..+.+..+.|....-.... .......++|.|+|||..+++++|++..+
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 6899999999999888 333 3345566655543211111 11234567999999999999999998754
No 204
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=77.06 E-value=3.1 Score=40.46 Aligned_cols=105 Identities=16% Similarity=0.136 Sum_probs=73.6
Q ss_pred CCCHHHHHHHHh----hcCCEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecCCCCCCCCCcC--C
Q 003524 158 NVEDSELRALFE----QYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDL--N 231 (813)
Q Consensus 158 ~vTeedL~~lFs----~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~~~~--~ 231 (813)
..+-..|...+. ..|.+.-.. -..++..+.|.+.+++.++++ .....+.+..+.++.-.|......... .
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~---l~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~ 103 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRD---LGDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHI 103 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEE---eCCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceecc
Confidence 355555555554 344444332 356899999999999999988 355667788888876665544333222 2
Q ss_pred cceeeeeccCCC-CCHHHHHHHhcccCCeEEEEeCC
Q 003524 232 QGTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRETP 266 (813)
Q Consensus 232 ~~tLfV~NLp~~-vteedL~~lFs~fG~I~~iri~~ 266 (813)
.--|.|.|||.. .+++-|+++.+..|++.++....
T Consensus 104 ~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 104 PVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred chhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 234778899988 58889999999999999998643
No 205
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=76.17 E-value=8.8 Score=33.15 Aligned_cols=58 Identities=22% Similarity=0.398 Sum_probs=35.6
Q ss_pred CCCHHHHHHHhcccC-----CeEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003524 243 SVSNEDLRQIFGAYG-----EVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 304 (813)
Q Consensus 243 ~vteedL~~lFs~fG-----~I~~iri~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~a 304 (813)
.++..+|..++..-+ .|-.|++. ..|+||+-.. +.|..++..|++..+.|++|+|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~---~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF---DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe---eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 567788888877664 45566774 3589999876 5889999999999999999999865
No 206
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=75.96 E-value=19 Score=33.84 Aligned_cols=64 Identities=19% Similarity=0.283 Sum_probs=44.4
Q ss_pred ceeeeeccCCC-CCHHHHHHHhcccC-CeEEEEeCCC---CccEEEEEEcCHHHHHHHHHHhCCCccCC
Q 003524 233 GTLVVFNLDPS-VSNEDLRQIFGAYG-EVKEIRETPH---KRHHKFIEFYDVRAAEAALKSLNRSDIAG 296 (813)
Q Consensus 233 ~tLfV~NLp~~-vteedL~~lFs~fG-~I~~iri~~~---srG~aFVeF~d~e~A~~Ai~~LnG~~i~G 296 (813)
.+|.|--.|+. ++.++|..+.+.+- .|..+|+... .+-.+.++|.+.++|.+-.+.+||+.+..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34444444544 55667776666664 4556666332 34468999999999999999999998864
No 207
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=74.70 E-value=1.8 Score=49.56 Aligned_cols=78 Identities=14% Similarity=0.219 Sum_probs=63.1
Q ss_pred CCCCCEEEEcCCCCCCC-HHHHHHHHhhcCCEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeecCCC
Q 003524 144 EHPSRTLFVRNINSNVE-DSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 222 (813)
Q Consensus 144 e~~srtLfVgNLP~~vT-eedL~~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 222 (813)
+...+.|-+.-.|..+. .++|...|.+||+|..|.+.-. --.|.|+|.+..+|-+|.. .++..|.++.|+|.|-.+.
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhc-cccceecCceeEEEEecCC
Confidence 34566777777777754 5889999999999999986433 4569999999999977776 6899999999999998764
Q ss_pred C
Q 003524 223 D 223 (813)
Q Consensus 223 ~ 223 (813)
.
T Consensus 447 ~ 447 (526)
T KOG2135|consen 447 P 447 (526)
T ss_pred c
Confidence 3
No 208
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=72.30 E-value=5.9 Score=43.15 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=48.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcCCccccce
Q 003524 148 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 213 (813)
Q Consensus 148 rtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~ 213 (813)
.=|-|-++|+. .-..|..+|++||+|.+... ...-.+-+|.|.+.-+|++||. .+|+.|.|..
T Consensus 198 ~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~-~~ngNwMhirYssr~~A~KALs-kng~ii~g~v 260 (350)
T KOG4285|consen 198 TWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVT-PSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDV 260 (350)
T ss_pred ceEEEeccCcc-chhHHHHHHHhhCeeeeeec-CCCCceEEEEecchhHHHHhhh-hcCeeeccce
Confidence 34556677764 34567889999999998864 4566689999999999999999 4888887654
No 209
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=68.07 E-value=7.3 Score=39.58 Aligned_cols=74 Identities=20% Similarity=0.283 Sum_probs=51.4
Q ss_pred eeeeeccCCCCC-----HHHHHHHhcccCCeEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCc-eEEEEecCCC
Q 003524 234 TLVVFNLDPSVS-----NEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK-RIKLEPSRPG 307 (813)
Q Consensus 234 tLfV~NLp~~vt-----eedL~~lFs~fG~I~~iri~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr-~I~V~~ak~~ 307 (813)
++.+.+++..+- ......+|.+|-+....++. ++.+..-|.|.+.+.|+.|...+++..+.|+ .++.-|+.+.
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l-rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL-RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH-HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 466666666542 22334566655554444432 2344577999999999999999999999998 8888888765
Q ss_pred c
Q 003524 308 G 308 (813)
Q Consensus 308 ~ 308 (813)
-
T Consensus 91 ~ 91 (193)
T KOG4019|consen 91 H 91 (193)
T ss_pred C
Confidence 4
No 210
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=67.72 E-value=19 Score=30.87 Aligned_cols=55 Identities=22% Similarity=0.378 Sum_probs=44.1
Q ss_pred CCCHHHHHHHhcccCCeEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 003524 243 SVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKL 301 (813)
Q Consensus 243 ~vteedL~~lFs~fG~I~~iri~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V 301 (813)
.++-++++..+..|+- ..|+.. ..| -||.|.+.++|+++....+|+.+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~d--~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRDD--RTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEec--CCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4788999999999974 344432 234 589999999999999999999988877765
No 211
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=65.68 E-value=4.2 Score=49.59 Aligned_cols=74 Identities=22% Similarity=0.341 Sum_probs=59.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcCCccc--cceeeeeecCCCC
Q 003524 149 TLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIPKD 223 (813)
Q Consensus 149 tLfVgNLP~~vTeedL~~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~--gr~L~V~~a~pk~ 223 (813)
+.++-|.+-..+..-|..+|.+||.|.+++. -+....|.|+|...+.|..|+.+|+|+++. |-+.+|.++++..
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wt-lr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWT-LRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhhee-cccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 3445556667788899999999999999874 234567999999999999999999998864 7788888887543
No 212
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=63.69 E-value=6.2 Score=47.05 Aligned_cols=69 Identities=22% Similarity=0.207 Sum_probs=61.0
Q ss_pred CcceeeeeccCCCCCHHHHHHHhcccCCeEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003524 231 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 303 (813)
Q Consensus 231 ~~~tLfV~NLp~~vteedL~~lFs~fG~I~~iri~~~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~I~V~~ 303 (813)
..-++||+|+-..+.++-++.+...+|.|..+.... |||.+|.++..+.+|+..++-..++|..+.+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 346899999999999999999999999998886542 999999999999999999999999888776654
No 213
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=63.36 E-value=1.2e+02 Score=33.26 Aligned_cols=145 Identities=16% Similarity=0.303 Sum_probs=91.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEeCC------------CcceEEEEEEccHHHHHHHHH----HhcC--
Q 003524 145 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC------------KHRGFVMISYYDIRAARTAMR----ALQN-- 206 (813)
Q Consensus 145 ~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~~~------------ksrG~AFV~F~d~e~A~~Ai~----~Lng-- 206 (813)
--+|.|.+.|+..+++-..+...|-+||+|++|+... +......+.|-+.+.+-.... .|..
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999998422 234678999999887654432 2222
Q ss_pred CccccceeeeeecCCCCCC----C--CCc----------------CCcceeeeeccCCCCCHHH-HHHHh---cccCC--
Q 003524 207 KPLRRRKLDIHFSIPKDNP----S--DKD----------------LNQGTLVVFNLDPSVSNED-LRQIF---GAYGE-- 258 (813)
Q Consensus 207 ~~l~gr~L~V~~a~pk~~~----~--~~~----------------~~~~tLfV~NLp~~vteed-L~~lF---s~fG~-- 258 (813)
..+....|.+.|..-+... . +.. ...+.|.|. +...+.+++ +.+.+ ..=+.
T Consensus 93 ~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n~R 171 (309)
T PF10567_consen 93 TKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNNKR 171 (309)
T ss_pred HhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCCCce
Confidence 3466777777765421100 0 000 112456665 334443333 33332 22232
Q ss_pred --eEEEEeC-------CCCccEEEEEEcCHHHHHHHHHHhC
Q 003524 259 --VKEIRET-------PHKRHHKFIEFYDVRAAEAALKSLN 290 (813)
Q Consensus 259 --I~~iri~-------~~srG~aFVeF~d~e~A~~Ai~~Ln 290 (813)
|++|.+. .-.+.||.++|-+..-|.+.+.-|.
T Consensus 172 YVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 172 YVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred EEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 3444431 1136799999999999999988776
No 214
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=58.11 E-value=7.9 Score=46.22 Aligned_cols=71 Identities=20% Similarity=0.208 Sum_probs=61.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeee
Q 003524 144 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 218 (813)
Q Consensus 144 e~~srtLfVgNLP~~vTeedL~~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 218 (813)
..+.-++||+|+...+..+-++.+...+|-|.+++... |+|..|.....+.+|+..++...+.+..+.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 34678999999999999999999999999999876322 999999999999999999998889888776654
No 215
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=57.67 E-value=33 Score=29.36 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHhhcCCEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeee
Q 003524 158 NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 216 (813)
Q Consensus 158 ~vTeedL~~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V 216 (813)
.++-++++..+..|+-.. |.. ...| -||.|.+.++|+++....++..+..-.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~-I~~--d~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR-IRD--DRTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcce-EEe--cCCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 478899999999997433 322 2234 589999999999999999998887766654
No 216
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.30 E-value=52 Score=39.09 Aligned_cols=78 Identities=19% Similarity=0.313 Sum_probs=60.3
Q ss_pred CCCCCCCEEEEcCCCCC-CCHHHHHHHHhhc----CCEEEEE---------------eCCC-------------------
Q 003524 142 YGEHPSRTLFVRNINSN-VEDSELRALFEQY----GDIRTLY---------------TACK------------------- 182 (813)
Q Consensus 142 ~~e~~srtLfVgNLP~~-vTeedL~~lFs~f----G~I~~v~---------------~~~k------------------- 182 (813)
.....+++|-|.|+.++ +..++|..+|..| |.|.+|. +.|.
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~e 248 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDE 248 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchh
Confidence 34567899999999987 7889999999866 4787775 1222
Q ss_pred ------------------cceEEEEEEccHHHHHHHHHHhcCCccc--cceeeeeec
Q 003524 183 ------------------HRGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHFS 219 (813)
Q Consensus 183 ------------------srG~AFV~F~d~e~A~~Ai~~Lng~~l~--gr~L~V~~a 219 (813)
..=||.|+|.+++.|.+....++|..+. +..|.++|.
T Consensus 249 e~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 249 EEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 1127999999999999999999999886 456666663
No 217
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=42.52 E-value=82 Score=36.45 Aligned_cols=65 Identities=17% Similarity=0.308 Sum_probs=53.2
Q ss_pred cceeeeeccCCCCCHHHHHHHhcccC-CeEEEEeCC--C-CccEEEEEEcCHHHHHHHHHHhCCCccCC
Q 003524 232 QGTLVVFNLDPSVSNEDLRQIFGAYG-EVKEIRETP--H-KRHHKFIEFYDVRAAEAALKSLNRSDIAG 296 (813)
Q Consensus 232 ~~tLfV~NLp~~vteedL~~lFs~fG-~I~~iri~~--~-srG~aFVeF~d~e~A~~Ai~~LnG~~i~G 296 (813)
...|+|-.+|..++-.||..++..+- .|..|++.. . .+-.+.|+|.+.++|..-.+.+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 67899999999999999999998764 456665532 2 23458999999999999999999998864
No 218
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.39 E-value=88 Score=37.29 Aligned_cols=74 Identities=19% Similarity=0.301 Sum_probs=57.1
Q ss_pred CcceeeeeccCCC-CCHHHHHHHhccc----CCeEEEEe---------------CCC-----------------------
Q 003524 231 NQGTLVVFNLDPS-VSNEDLRQIFGAY----GEVKEIRE---------------TPH----------------------- 267 (813)
Q Consensus 231 ~~~tLfV~NLp~~-vteedL~~lFs~f----G~I~~iri---------------~~~----------------------- 267 (813)
..+.|-|.|++++ +.-++|.-+|..| |.|.+|.| .+.
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 3568999999987 7889999998866 58888843 121
Q ss_pred --------------CccEEEEEEcCHHHHHHHHHHhCCCccCC--ceEEEEec
Q 003524 268 --------------KRHHKFIEFYDVRAAEAALKSLNRSDIAG--KRIKLEPS 304 (813)
Q Consensus 268 --------------srG~aFVeF~d~e~A~~Ai~~LnG~~i~G--r~I~V~~a 304 (813)
.--||.|+|.+.+.|.+.....+|..+.. ..|-+.|-
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 01269999999999999999999998874 55555553
No 219
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=40.84 E-value=99 Score=26.60 Aligned_cols=59 Identities=12% Similarity=0.244 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHhhcCC-----EEEEEeCCCcceEEEEEEccHHHHHHHHHHhcCCccccceeeeeec
Q 003524 157 SNVEDSELRALFEQYGD-----IRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 219 (813)
Q Consensus 157 ~~vTeedL~~lFs~fG~-----I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 219 (813)
..++..+|..++..-+. |-.|.+ ...|+||+-.. +.|+.+++.|++..+.|+++.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I---~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDI---FDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEE---eeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 35788888888886654 445554 33588888654 5888999999999999999999864
No 220
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=38.83 E-value=60 Score=29.12 Aligned_cols=55 Identities=15% Similarity=0.365 Sum_probs=40.8
Q ss_pred eeeeeccCCCCCHHHHHHHhcc-cC-CeEEEEe--CCCCccEEEEEEcCHHHHHHHHHH
Q 003524 234 TLVVFNLDPSVSNEDLRQIFGA-YG-EVKEIRE--TPHKRHHKFIEFYDVRAAEAALKS 288 (813)
Q Consensus 234 tLfV~NLp~~vteedL~~lFs~-fG-~I~~iri--~~~srG~aFVeF~d~e~A~~Ai~~ 288 (813)
+-|+.-++...+..+|++.++. || +|..|+. .+...--|||++..-.+|......
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 5677778999999999999986 66 5677754 222233599999998888877553
No 221
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=36.06 E-value=75 Score=28.04 Aligned_cols=55 Identities=16% Similarity=0.379 Sum_probs=40.0
Q ss_pred eeeeeccCCCCCHHHHHHHhcc-cC-CeEEEEe--CCCCccEEEEEEcCHHHHHHHHHH
Q 003524 234 TLVVFNLDPSVSNEDLRQIFGA-YG-EVKEIRE--TPHKRHHKFIEFYDVRAAEAALKS 288 (813)
Q Consensus 234 tLfV~NLp~~vteedL~~lFs~-fG-~I~~iri--~~~srG~aFVeF~d~e~A~~Ai~~ 288 (813)
+-|+..++...+..+|++.++. || +|..|+. .+...--|||++..-+.|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 5677788999999999998886 55 5666653 222223599999988888776543
No 222
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=33.99 E-value=59 Score=35.35 Aligned_cols=48 Identities=8% Similarity=0.171 Sum_probs=37.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcCCEE-EEEeCCCcceEEEEEEccHH
Q 003524 147 SRTLFVRNINSNVEDSELRALFEQYGDIR-TLYTACKHRGFVMISYYDIR 195 (813)
Q Consensus 147 srtLfVgNLP~~vTeedL~~lFs~fG~I~-~v~~~~ksrG~AFV~F~d~e 195 (813)
..-|+|+||+.++.-.||+..+.+.+.+- ++.- ..+.|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw-kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW-KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee-ecCCcceeEecCCcc
Confidence 45799999999999999999999877542 3322 346788999998754
No 223
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.80 E-value=94 Score=35.40 Aligned_cols=55 Identities=24% Similarity=0.344 Sum_probs=44.1
Q ss_pred cceeeeeccCCCCCHHHHHHHhcccCC-eEEEEeCCCCccEEEEEEcCHHHHHHHHHH
Q 003524 232 QGTLVVFNLDPSVSNEDLRQIFGAYGE-VKEIRETPHKRHHKFIEFYDVRAAEAALKS 288 (813)
Q Consensus 232 ~~tLfV~NLp~~vteedL~~lFs~fG~-I~~iri~~~srG~aFVeF~d~e~A~~Ai~~ 288 (813)
...|-|.++|.....+||...|+.|+. -.+|+.. ...+||-.|.....|..|+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWv--DdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWV--DDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEe--ecceeEEeecchHHHHHHhhc
Confidence 457899999999999999999999974 2334332 235799999999999999973
No 224
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=30.01 E-value=22 Score=38.21 Aligned_cols=62 Identities=27% Similarity=0.495 Sum_probs=42.7
Q ss_pred CEEEEcCCCCC------------CCHHHHHHHHhhcCCEEEEE----------eCCCc-----ceE---------EEEEE
Q 003524 148 RTLFVRNINSN------------VEDSELRALFEQYGDIRTLY----------TACKH-----RGF---------VMISY 191 (813)
Q Consensus 148 rtLfVgNLP~~------------vTeedL~~lFs~fG~I~~v~----------~~~ks-----rG~---------AFV~F 191 (813)
.||++-+||-. -+++-|+..|+.||+|..|. ++++. .|| |||+|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 57888888753 35778999999999999875 23443 233 45666
Q ss_pred ccHHHHHHHHHHhcCCcc
Q 003524 192 YDIRAARTAMRALQNKPL 209 (813)
Q Consensus 192 ~d~e~A~~Ai~~Lng~~l 209 (813)
....--..|+.+|.|..+
T Consensus 230 meykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHhHHHHHHHHhcchH
Confidence 666666677777777654
No 225
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=29.29 E-value=23 Score=32.01 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=22.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHh
Q 003524 144 EHPSRTLFVRNINSNVEDSELRALFE 169 (813)
Q Consensus 144 e~~srtLfVgNLP~~vTeedL~~lFs 169 (813)
....++|.|.|||..+++++|++.++
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 35678999999999999999997664
No 226
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=22.46 E-value=2.5e+02 Score=31.40 Aligned_cols=97 Identities=16% Similarity=0.225 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHhhCCCcccEEEeeecccccceeEE-----EEEecCCcccHHHHHHHhcCCcccCCCCccEEEEEeeec
Q 003524 660 KYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGY-----AFINMLSPLHIIPFYEAFNGKKWEKFNSEKVASLAYARI 734 (813)
Q Consensus 660 k~~~~~l~~~id~~~~~~ydf~Ylp~df~~~~n~gy-----aFin~~~~~~~~~f~~~f~~~~w~~~~s~k~~~~~~A~i 734 (813)
+++++.|+++|+-.....|+- ..=|| |-.-| --||=++...-..+...|-.+.... .---|..+.+..+
T Consensus 243 RIs~etlk~vl~g~~~~~f~k-CiIID----CRFeYEY~GGHIinaVNi~s~~~l~~~F~hkplTh-p~aLifHCEfSsh 316 (427)
T COG5105 243 RISVETLKQVLEGMYNIDFLK-CIIID----CRFEYEYRGGHIINAVNISSTKKLGLLFRHKPLTH-PRALIFHCEFSSH 316 (427)
T ss_pred hcCHHHHHHHHhchhhhhhhc-eeEEe----ecceeeecCceeeeeeecchHHHHHHHHHhccccC-ceeEEEEeecccc
Confidence 568999999999776555543 22333 32333 3355555555555556666554221 1112334445555
Q ss_pred ccHHHHHHHhccCcCCCCCCCccceEEcCC
Q 003524 735 QGRAALVAHFQNSSLMNEDKRCRPILFHSE 764 (813)
Q Consensus 735 Qg~~~l~~~~~~s~~~~~~~~~~p~~f~~~ 764 (813)
.|. .|-+||||.--|.....| |+||+++
T Consensus 317 RaP-~LA~HlRN~DR~~N~dhY-P~L~yPe 344 (427)
T COG5105 317 RAP-RLAQHLRNMDRMKNPDHY-PLLTYPE 344 (427)
T ss_pred cch-hHHHHHhhhhhhcCcccC-cccccce
Confidence 555 489999997666544444 6777665
No 227
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=22.42 E-value=72 Score=32.71 Aligned_cols=74 Identities=20% Similarity=0.255 Sum_probs=52.6
Q ss_pred CEEEEcCCCCCCCH-----HHHHHHHhhcCCEEEEEeCCCcceEEEEEEccHHHHHHHHHHhcCCccccc-eeeeeecCC
Q 003524 148 RTLFVRNINSNVED-----SELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRR-KLDIHFSIP 221 (813)
Q Consensus 148 rtLfVgNLP~~vTe-----edL~~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Ai~~Lng~~l~gr-~L~V~~a~p 221 (813)
.++++.+|+..+-. .....+|.+|-+...... -++.+..-|.|.+.+.|..|...+++..+.|+ .++..++.+
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~-lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQL-LRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHH-HHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 56777777766432 234456666655443321 34667788999999999999999999999988 788777765
Q ss_pred C
Q 003524 222 K 222 (813)
Q Consensus 222 k 222 (813)
.
T Consensus 90 ~ 90 (193)
T KOG4019|consen 90 G 90 (193)
T ss_pred C
Confidence 4
No 228
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=22.15 E-value=1.7e+02 Score=36.55 Aligned_cols=30 Identities=30% Similarity=0.489 Sum_probs=24.8
Q ss_pred CCCCEEEEcCCCCCC-CHHHHHHHHhhcCCE
Q 003524 145 HPSRTLFVRNINSNV-EDSELRALFEQYGDI 174 (813)
Q Consensus 145 ~~srtLfVgNLP~~v-TeedL~~lFs~fG~I 174 (813)
-.+|||+|..||.++ ++++|.++|.+.+..
T Consensus 206 ~ssRTvlis~LP~~~~~~e~L~~~~~kl~~~ 236 (827)
T COG5594 206 LSSRTVLISGLPSELRSDEELKELFDKLKVG 236 (827)
T ss_pred CCCceEEeecCChhhcCchhHHHHHhhcCee
Confidence 478999999999884 567899999987543
No 229
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=20.01 E-value=1.5e+02 Score=32.51 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=37.5
Q ss_pred EEEEEccHHHHHHHHHHhcCCccccceeeeeecCCCCCCCCCcCCcceeeeeccCCCCCHHHHHHHhcc
Q 003524 187 VMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGA 255 (813)
Q Consensus 187 AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~vteedL~~lFs~ 255 (813)
|||+|++.++|..|++.+.... .+.+.++.|.+. ..|.-.||..+..+..+|.++..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP----------~DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEP----------DDIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCc----------ccccccccCCChHHHHHHHHHHH
Confidence 7999999999999999654443 244566655422 23555677666666666665543
Done!