BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003525
(813 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 1238 bits (3202), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 598/762 (78%), Positives = 682/762 (89%), Gaps = 2/762 (0%)
Query: 25 STAILDRKKSPNRLVVDEAINDDNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVL 84
STAIL +K PNRL+VDEAIN+DNSV+++ M++LQ FRGDTVL+KGKKR++ VC+VL
Sbjct: 13 STAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVL 72
Query: 85 SDELCEASKVRVNKVVRSNLRVRLGDVVSVHPCPDVKYGRRVHILPIDDTIEGVTGNLFD 144
SD+ C K+R+N+VVR+NLRVRLGDV+S+ PCPDVKYG+R+H+LPIDDT+EG+TGNLF+
Sbjct: 73 SDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFE 132
Query: 145 AYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVKRE 204
YLKPYF+E+YRP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPDT I CEGEP+KRE
Sbjct: 133 VYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKRE 192
Query: 205 DEER-LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKT 263
DEE LNEVGYDDVGG RKQ+AQI+E+VELPLRHP LFK+IGVKPP+GILLYGPPG+GKT
Sbjct: 193 DEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252
Query: 264 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPK 323
LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAP+IIFIDELD+IAPK
Sbjct: 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK 312
Query: 324 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVP 383
REKTHGEVERRIVSQLLTLMDGLK RAHVIVM ATNRPNSIDPALRRFGRFDRE+DIG+P
Sbjct: 313 REKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIP 372
Query: 384 DEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDL 443
D GRLEIL+IHTKNMKLA+DVDLE+VA +THG+VG+DLAALC+EAALQ IR+KMD+IDL
Sbjct: 373 DATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432
Query: 444 EDETIDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLDNVKRELQET 503
EDETIDAEV+NS+AVT + F+ AL SNPSALRETVVEVP V+WEDIGGL++VKRELQE
Sbjct: 433 EDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQEL 492
Query: 504 VQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 563
VQYPVEHP+KF KFGM+PSKGVLFYGPPGCGKTLLAKAIANECQANFIS+KGPELLTMWF
Sbjct: 493 VQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 552
Query: 564 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTXXXXXXXXRVLNQLLTEMDGMN 623
GESEANVREIFDKARQ+APCVLFFDELDSIA RG + RV+NQ+LTEMDGM+
Sbjct: 553 GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612
Query: 624 AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDL 683
KK VFIIGATNRPDIIDPA+LRPGRLDQLIYIPLPDE SR+ I KA LRKSP++ DVDL
Sbjct: 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL 672
Query: 684 SALARYTHGFSGADITEVCQRACKYAIRENIEKDIERERRKMENPEAMXXXXXXXXXXIK 743
LA+ T+GFSGAD+TE+CQRACK AIRE+IE +I RER + NP AM I+
Sbjct: 673 EFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIR 732
Query: 744 AVHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGFGSEFRF 785
HFEE+M++ARRSVSD DIRKY++FAQTLQQSRGFGS FRF
Sbjct: 733 RDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRF 773
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 1237 bits (3200), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/762 (78%), Positives = 682/762 (89%), Gaps = 2/762 (0%)
Query: 25 STAILDRKKSPNRLVVDEAINDDNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVL 84
STAIL +K PNRL+VDEAIN+DNSV+++ M++LQ FRGDTVL+KGKKR++ VC+VL
Sbjct: 13 STAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVL 72
Query: 85 SDELCEASKVRVNKVVRSNLRVRLGDVVSVHPCPDVKYGRRVHILPIDDTIEGVTGNLFD 144
SD+ C K+R+N+VVR+NLRVRLGDV+S+ PCPDVKYG+R+H+LPIDDT+EG+TGNLF+
Sbjct: 73 SDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFE 132
Query: 145 AYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVKRE 204
YLKPYF+E+YRP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPDT I CEGEP+KRE
Sbjct: 133 VYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKRE 192
Query: 205 DEER-LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKT 263
DEE LNEVGYDD+GG RKQ+AQI+E+VELPLRHP LFK+IGVKPP+GILLYGPPG+GKT
Sbjct: 193 DEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252
Query: 264 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPK 323
LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAP+IIFIDELD+IAPK
Sbjct: 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK 312
Query: 324 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVP 383
REKTHGEVERRIVSQLLTLMDGLK RAHVIVM ATNRPNSIDPALRRFGRFDRE+DIG+P
Sbjct: 313 REKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIP 372
Query: 384 DEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDL 443
D GRLEIL+IHTKNMKLA+DVDLE+VA +THG+VG+DLAALC+EAALQ IR+KMD+IDL
Sbjct: 373 DATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432
Query: 444 EDETIDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLDNVKRELQET 503
EDETIDAEV+NS+AVT + F+ AL SNPSALRETVVEVP V+WEDIGGL++VKRELQE
Sbjct: 433 EDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQEL 492
Query: 504 VQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 563
VQYPVEHP+KF KFGM+PSKGVLFYGPPGCGKTLLAKAIANECQANFIS+KGPELLTMWF
Sbjct: 493 VQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 552
Query: 564 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTXXXXXXXXRVLNQLLTEMDGMN 623
GESEANVREIFDKARQ+APCVLFFDELDSIA RG + RV+NQ+LTEMDGM+
Sbjct: 553 GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612
Query: 624 AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDL 683
KK VFIIGATNRPDIIDPA+LRPGRLDQLIYIPLPDE SR+ I KA LRKSP++ DVDL
Sbjct: 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL 672
Query: 684 SALARYTHGFSGADITEVCQRACKYAIRENIEKDIERERRKMENPEAMXXXXXXXXXXIK 743
LA+ T+GFSGAD+TE+CQRACK AIRE+IE +I RER + NP AM I+
Sbjct: 673 EFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIR 732
Query: 744 AVHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGFGSEFRF 785
HFEE+M++ARRSVSD DIRKY++FAQTLQQSRGFGS FRF
Sbjct: 733 RDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRF 773
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/469 (80%), Positives = 433/469 (92%), Gaps = 1/469 (0%)
Query: 25 STAILDRKKSPNRLVVDEAINDDNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVL 84
STAIL +K PNRL+VDEAIN+DNSV+++ M++LQ FRGDTVL+KGKKR++ VC+VL
Sbjct: 13 STAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVL 72
Query: 85 SDELCEASKVRVNKVVRSNLRVRLGDVVSVHPCPDVKYGRRVHILPIDDTIEGVTGNLFD 144
SD+ C K+R+N VVR+NLRVRLGDV+S+ PCPDVKYG+R+H+LPIDDT+EG+TGNLF+
Sbjct: 73 SDDTCSDEKIRMNAVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFE 132
Query: 145 AYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVKRE 204
YLKPYF+E+YRP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPDT I CEGEP+KRE
Sbjct: 133 VYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKRE 192
Query: 205 DEER-LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKT 263
DEE LNEVGYDD+GG RKQ+AQI+E+VELPLRHP LFK+IGVKPP+GILLYGPPG+GKT
Sbjct: 193 DEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252
Query: 264 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPK 323
LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAP+IIFIDELD+IAPK
Sbjct: 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK 312
Query: 324 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVP 383
REKTHGEVERRIVSQLLTLMDGLK RAHVIVM ATNRPNSIDPALRRFGRFDRE+DIG+P
Sbjct: 313 REKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIP 372
Query: 384 DEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDL 443
D GRLEIL+IHTKNMKLA+DVDLE+VA +THG+VG+DLAALC+EAALQ IR+KMD+IDL
Sbjct: 373 DATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432
Query: 444 EDETIDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWEDIGG 492
EDETIDAEV+NS+AVT + F+ AL SNPSALRETVVEVP V+WEDIGG
Sbjct: 433 EDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
Score = 204 bits (519), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 97/231 (41%), Positives = 149/231 (64%), Gaps = 3/231 (1%)
Query: 485 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 544
V ++DIGG +++E V+ P+ HP F+ G+ P +G+L YGPPG GKTL+A+A+AN
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 545 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTXXX 604
E A F + GPE+++ GESE+N+R+ F++A ++AP ++F DELD+IA +R +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---H 317
Query: 605 XXXXXRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASR 664
R+++QLLT MDG+ + V ++ ATNRP+ IDPAL R GR D+ + I +PD R
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 665 LQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIE 715
L+I + + ++ DVDL +A THG GAD+ +C A AIR+ ++
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/469 (79%), Positives = 433/469 (92%), Gaps = 1/469 (0%)
Query: 25 STAILDRKKSPNRLVVDEAINDDNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVL 84
STAIL +K PNRL+VDEAIN+DNSV+++ M++LQ FRGDTVL+KGKKR++ VC+VL
Sbjct: 13 STAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVL 72
Query: 85 SDELCEASKVRVNKVVRSNLRVRLGDVVSVHPCPDVKYGRRVHILPIDDTIEGVTGNLFD 144
SD+ C K+R+N+VVR+NLRVRLGDV+S+ PCPDVKYG+R+H+LPIDDT+EG+TGNLF+
Sbjct: 73 SDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFE 132
Query: 145 AYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVKRE 204
YLKPYF+E+YRP+RKGD+FLV GGMR+VEFKV+ETDP YC+VAPDT I CEGEP+KRE
Sbjct: 133 VYLKPYFLEAYRPIRKGDIFLVHGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKRE 192
Query: 205 DEER-LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKT 263
DEE LNEVGYDD+GG RKQ+AQI+E+VELPLRHP LFK+IGVKPP+GILLYGPPG+GKT
Sbjct: 193 DEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252
Query: 264 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPK 323
LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAP+IIFIDELD+IAPK
Sbjct: 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK 312
Query: 324 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVP 383
REKTHGEVERRIVSQLLTLMDGLK RAHVIVM ATNRPNSIDPALRRFGRFDRE+DIG+P
Sbjct: 313 REKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIP 372
Query: 384 DEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDL 443
D GRLEIL+IHTKNMKLA+DVDLE+VA +THG+VG+DLAALC+EAALQ IR+KMD+IDL
Sbjct: 373 DATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432
Query: 444 EDETIDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWEDIGG 492
EDETIDAEV+NS+AVT + F+ AL SNPSALRETVVEVP V+WEDIGG
Sbjct: 433 EDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
Score = 204 bits (519), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 97/231 (41%), Positives = 149/231 (64%), Gaps = 3/231 (1%)
Query: 485 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 544
V ++DIGG +++E V+ P+ HP F+ G+ P +G+L YGPPG GKTL+A+A+AN
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 545 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTXXX 604
E A F + GPE+++ GESE+N+R+ F++A ++AP ++F DELD+IA +R +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---H 317
Query: 605 XXXXXRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASR 664
R+++QLLT MDG+ + V ++ ATNRP+ IDPAL R GR D+ + I +PD R
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 665 LQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIE 715
L+I + + ++ DVDL +A THG GAD+ +C A AIR+ ++
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/469 (79%), Positives = 433/469 (92%), Gaps = 1/469 (0%)
Query: 25 STAILDRKKSPNRLVVDEAINDDNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVL 84
STAIL +K PNRL+VDEAIN+DNSV+++ M++LQ FRGDTVL+KGKKR++ VC+VL
Sbjct: 13 STAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVL 72
Query: 85 SDELCEASKVRVNKVVRSNLRVRLGDVVSVHPCPDVKYGRRVHILPIDDTIEGVTGNLFD 144
SD+ C K+R+N+VVR+NLRV LGDV+S+ PCPDVKYG+R+H+LPIDDT+EG+TGNLF+
Sbjct: 73 SDDTCSDEKIRMNRVVRNNLRVGLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFE 132
Query: 145 AYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVKRE 204
YLKPYF+E+YRP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPDT I CEGEP+KRE
Sbjct: 133 VYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKRE 192
Query: 205 DEER-LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKT 263
DEE LNEVGYDD+GG RKQ+AQI+E+VELPLRHP LFK+IGVKPP+GILLYGPPG+GKT
Sbjct: 193 DEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252
Query: 264 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPK 323
LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAP+IIFIDELD+IAPK
Sbjct: 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK 312
Query: 324 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVP 383
REKTHGEVERRIVSQLLTLMDGLK RAHVIVM ATNRPNSIDPALRRFGRFDRE+DIG+P
Sbjct: 313 REKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIP 372
Query: 384 DEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDL 443
D GRLEIL+IHTKNMKLA+DVDLE+VA +THG+VG+DLAALC+EAALQ IR+KMD+IDL
Sbjct: 373 DATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432
Query: 444 EDETIDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWEDIGG 492
EDETIDAEV+NS+AVT + F+ AL SNPSALRETVVEVP V+WEDIGG
Sbjct: 433 EDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
Score = 204 bits (519), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 97/231 (41%), Positives = 149/231 (64%), Gaps = 3/231 (1%)
Query: 485 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 544
V ++DIGG +++E V+ P+ HP F+ G+ P +G+L YGPPG GKTL+A+A+AN
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 545 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTXXX 604
E A F + GPE+++ GESE+N+R+ F++A ++AP ++F DELD+IA +R +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---H 317
Query: 605 XXXXXRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASR 664
R+++QLLT MDG+ + V ++ ATNRP+ IDPAL R GR D+ + I +PD R
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 665 LQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIE 715
L+I + + ++ DVDL +A THG GAD+ +C A AIR+ ++
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/444 (80%), Positives = 412/444 (92%), Gaps = 1/444 (0%)
Query: 25 STAILDRKKSPNRLVVDEAINDDNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVL 84
STAIL +K PNRL+VDEAIN+DNSV+++ M++LQ FRGDTVL+KGKKR++ VC+VL
Sbjct: 13 STAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVL 72
Query: 85 SDELCEASKVRVNKVVRSNLRVRLGDVVSVHPCPDVKYGRRVHILPIDDTIEGVTGNLFD 144
SD+ C K+R+N+VVR+NLRVRLGDV+S+ PCPDVKYG+R+H+LPIDDT+EG+TGNLF+
Sbjct: 73 SDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFE 132
Query: 145 AYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVKRE 204
YLKPYF+E+YRP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPDT I CEGEP+KRE
Sbjct: 133 VYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKRE 192
Query: 205 DEER-LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKT 263
DEE LNEVGYDDVGG RKQ+AQI+E+VELPLRHP LFK+IGVKPP+GILLYGPPG+GKT
Sbjct: 193 DEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252
Query: 264 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPK 323
LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAP+IIFIDELD+IAPK
Sbjct: 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK 312
Query: 324 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVP 383
REKTHGEVERRIVSQLLTLMDGLK RAHVIVM ATNRPNSIDPALRRFGRFDRE+DIG+P
Sbjct: 313 REKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIP 372
Query: 384 DEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDL 443
D GRLEIL+IHTKNMKLA+DVDLE+VA +THG+VG+DLAALC+EAALQ IR+KMD+IDL
Sbjct: 373 DATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432
Query: 444 EDETIDAEVLNSMAVTNEHFQTAL 467
EDETIDAEV+NS+AVT + F+ AL
Sbjct: 433 EDETIDAEVMNSLAVTMDDFRWAL 456
Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 96/231 (41%), Positives = 149/231 (64%), Gaps = 3/231 (1%)
Query: 485 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 544
V ++D+GG +++E V+ P+ HP F+ G+ P +G+L YGPPG GKTL+A+A+AN
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 545 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTXXX 604
E A F + GPE+++ GESE+N+R+ F++A ++AP ++F DELD+IA +R +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---H 317
Query: 605 XXXXXRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASR 664
R+++QLLT MDG+ + V ++ ATNRP+ IDPAL R GR D+ + I +PD R
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 665 LQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIE 715
L+I + + ++ DVDL +A THG GAD+ +C A AIR+ ++
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 453 bits (1165), Expect = e-127, Method: Compositional matrix adjust.
Identities = 228/301 (75%), Positives = 256/301 (85%)
Query: 474 ALRETVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGC 533
ALRETVVEVP V+WEDIGGL++VKRELQE VQYPVEHP+KF KFGM+PSKGVLFYGPPGC
Sbjct: 1 ALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGC 60
Query: 534 GKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSI 593
GKTLLAKAIANECQANFIS+KGPELLTMWFGESEANVREIFDKARQ+APCVLFFDELDSI
Sbjct: 61 GKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSI 120
Query: 594 ATQRGSSTXXXXXXXXRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQL 653
A RG + RV+NQ+LTEMDGM+ KK VFIIGATNRPDIIDPA+LRPGRLDQL
Sbjct: 121 AKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQL 180
Query: 654 IYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIREN 713
IYIPLPDE SR+ I KA LRKSP++ DVDL LA+ T+GFSGAD+TE+CQRACK AIRE+
Sbjct: 181 IYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 240
Query: 714 IEKDIERERRKMENPEAMXXXXXXXXXXIKAVHFEESMKYARRSVSDADIRKYQLFAQTL 773
IE +I RER + NP AM I+ HFEE+M++ARRSVSD DIRKY++FAQTL
Sbjct: 241 IESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTL 300
Query: 774 Q 774
Q
Sbjct: 301 Q 301
Score = 210 bits (534), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 103/230 (44%), Positives = 156/230 (67%), Gaps = 3/230 (1%)
Query: 203 REDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGK 262
RE + +V ++D+GG+ +++ELV+ P+ HP F G+ P KG+L YGPPG GK
Sbjct: 3 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGK 62
Query: 263 TLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAP 322
TL+A+A+ANE A F I GPE+++ GESE+N+R+ F++A + AP ++F DELDSIA
Sbjct: 63 TLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK 122
Query: 323 KREKTHGEVER---RIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREID 379
R G+ R+++Q+LT MDG+ ++ +V ++GATNRP+ IDPA+ R GR D+ I
Sbjct: 123 ARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIY 182
Query: 380 IGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEA 429
I +PDE R+ IL+ + + +A+DVDLE +AK T+G+ G+DL +C A
Sbjct: 183 IPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 232
>pdb|2PJH|B Chain B, Strctural Model Of The P97 N Domain- Npl4 Ubd Complex
Length = 193
Score = 311 bits (798), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 139/191 (72%), Positives = 172/191 (90%), Gaps = 1/191 (0%)
Query: 35 PNRLVVDEAINDDNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVLSDELCEASKV 94
PNRL+VDEAIN+DNSV+++ M++LQ FRGDTVL+KGKKR++ VC+VLSD+ C K+
Sbjct: 3 PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKI 62
Query: 95 RVNKVVRSNLRVRLGDVVSVHPCPDVKYGRRVHILPIDDTIEGVTGNLFDAYLKPYFMES 154
R+N+VVR+NLRVRLGDV+S+ PCPDVKYG+R+H+LPIDDT+EG+TGNLF+ YLKPYF+E+
Sbjct: 63 RMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEA 122
Query: 155 YRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVKREDEER-LNEVG 213
YRP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPDT I CEGEP+KREDEE LNEVG
Sbjct: 123 YRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVG 182
Query: 214 YDDVGGVRKQM 224
YDDVGG RKQ+
Sbjct: 183 YDDVGGCRKQL 193
>pdb|3QWZ|A Chain A, Crystal Structure Of Faf1 Ubx-P97n-Domain Complex
Length = 211
Score = 311 bits (797), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 139/196 (70%), Positives = 173/196 (88%), Gaps = 1/196 (0%)
Query: 25 STAILDRKKSPNRLVVDEAINDDNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVL 84
STAIL +K PNRL+VDEAIN+DNSV+++ M++LQ FRGDTVL+KG KR++ VC+VL
Sbjct: 16 STAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGXKRREAVCIVL 75
Query: 85 SDELCEASKVRVNKVVRSNLRVRLGDVVSVHPCPDVKYGRRVHILPIDDTIEGVTGNLFD 144
SD+ C K+R+N+VVR+NLRVRLGDV+S+ PCPDVKYG+R+H+LPIDDT+EG+TGNLF+
Sbjct: 76 SDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFE 135
Query: 145 AYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVKRE 204
YLKPYF+E+YRP+RKGD+FLVRGGMR+VEF V+ETDP YC+VAPDT I CEGEP+KRE
Sbjct: 136 VYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFXVVETDPSPYCIVAPDTVIHCEGEPIKRE 195
Query: 205 DEER-LNEVGYDDVGG 219
DEE LNEVGYDD+GG
Sbjct: 196 DEEESLNEVGYDDIGG 211
>pdb|3QC8|A Chain A, Crystal Structure Of Faf1 Ubx Domain In Complex With
P97VCP N DOMAIN Reveals The Conserved Fcisp Touch-Turn
Motif Of Ubx Domain Suffering Conformational Change
Length = 178
Score = 287 bits (735), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 125/173 (72%), Positives = 157/173 (90%)
Query: 35 PNRLVVDEAINDDNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVLSDELCEASKV 94
PNRL+VDEAIN+DNSV+++ M++LQ FRGDTVL+KGKKR++ VC+VLSD+ C K+
Sbjct: 5 PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKI 64
Query: 95 RVNKVVRSNLRVRLGDVVSVHPCPDVKYGRRVHILPIDDTIEGVTGNLFDAYLKPYFMES 154
R+N+VVR+NLRVRLGDV+S+ PCPDVKYG+R+H+LPIDDT+EG+TGNLF+ YLKPYF+E+
Sbjct: 65 RMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEA 124
Query: 155 YRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVKREDEE 207
YRP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPDT I CEGEP+KREDEE
Sbjct: 125 YRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEE 177
>pdb|3TIW|A Chain A, Crystal Structure Of P97n In Complex With The C-Terminus
Of Gp78
pdb|3TIW|B Chain B, Crystal Structure Of P97n In Complex With The C-Terminus
Of Gp78
Length = 187
Score = 284 bits (726), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 124/175 (70%), Positives = 156/175 (89%)
Query: 25 STAILDRKKSPNRLVVDEAINDDNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVL 84
STAIL +K PNRL+VDEAIN+DNSV+++ M++LQ FRGDTVL+KGKKR++ VC+VL
Sbjct: 13 STAILKQKSRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVL 72
Query: 85 SDELCEASKVRVNKVVRSNLRVRLGDVVSVHPCPDVKYGRRVHILPIDDTIEGVTGNLFD 144
SD+ C K+R+N+VVR+NLRVRLGDV+S+ PCPDVKYG+R+H+LPIDDT+EG+TGNLF+
Sbjct: 73 SDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFE 132
Query: 145 AYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGE 199
YLKPYF+E+YRP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPDT I CEGE
Sbjct: 133 VYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGE 187
>pdb|3QQ7|A Chain A, Crystal Structure Of The P97 N-Terminal Domain
pdb|3QQ8|A Chain A, Crystal Structure Of P97-N In Complex With Faf1-Ubx
Length = 186
Score = 283 bits (725), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 124/175 (70%), Positives = 156/175 (89%)
Query: 25 STAILDRKKSPNRLVVDEAINDDNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVL 84
STAIL +K PNRL+VDEAIN+DNSV+++ M++LQ FRGDTVL+KGKKR++ VC+VL
Sbjct: 12 STAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVL 71
Query: 85 SDELCEASKVRVNKVVRSNLRVRLGDVVSVHPCPDVKYGRRVHILPIDDTIEGVTGNLFD 144
SD+ C K+R+N+VVR+NLRVRLGDV+S+ PCPDVKYG+R+H+LPIDDT+EG+TGNLF+
Sbjct: 72 SDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFE 131
Query: 145 AYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGE 199
YLKPYF+E+YRP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPDT I CEGE
Sbjct: 132 VYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGE 186
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 267 bits (682), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 136/245 (55%), Positives = 183/245 (74%), Gaps = 4/245 (1%)
Query: 204 EDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKT 263
E +ER N V Y+D+GG+ KQM +IRE+VELPL+HP+LF+ +G++PPKGILLYGPPG+GKT
Sbjct: 7 EVDERPN-VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKT 65
Query: 264 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPK 323
L+A+AVA ET A F + G E++ K GE S ++ F+ A++ APSIIFIDE+D+IA K
Sbjct: 66 LLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAK 125
Query: 324 REK--THGEVE-RRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDI 380
R T G+ E +R + QLL MDG +R V ++GATNRP+ +DPA+ R GRFDR I++
Sbjct: 126 RTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEV 185
Query: 381 GVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDV 440
PDE GRLEIL+IHT+ M LAEDV+LE +AK T G VG++L A+CTEA + IRE D
Sbjct: 186 PAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDY 245
Query: 441 IDLED 445
+ ++D
Sbjct: 246 VTMDD 250
Score = 245 bits (625), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 118/234 (50%), Positives = 158/234 (67%)
Query: 479 VVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 538
V E PNV +EDIGGL+ +E++E V+ P++HPE FEK G+ P KG+L YGPPG GKTLL
Sbjct: 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67
Query: 539 AKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 598
AKA+A E A FI V G EL+ + GE + V++IF A++ AP ++F DE+D+IA +R
Sbjct: 68 AKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRT 127
Query: 599 SSTXXXXXXXXRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL 658
+ R L QLL EMDG +A+ V IIGATNRPDI+DPA+LRPGR D++I +P
Sbjct: 128 DALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPA 187
Query: 659 PDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRE 712
PDE RL+I K RK ++ DV+L +A+ T G GA++ +C A AIRE
Sbjct: 188 PDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRE 241
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 253 bits (647), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 132/286 (46%), Positives = 182/286 (63%), Gaps = 22/286 (7%)
Query: 482 VPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKA 541
VPNV+W DIG L++++ EL + PV +P++F+ G+ GVL GPPGCGKTLLAKA
Sbjct: 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKA 63
Query: 542 IANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSST 601
+ANE NFISVKGPELL M+ GESE VR++F +A+ SAPCV+FFDE+D++ +R +
Sbjct: 64 VANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRR---S 120
Query: 602 XXXXXXXXRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDE 661
RV+NQLLTEMDG+ A++ VFI+ ATNRPDIIDPA+LRPGRLD+ +++ LP
Sbjct: 121 DRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPP 180
Query: 662 ASRLQIFKACLR---KSPISPDVDLSALA--RYTHGFSGADITEVCQRACKYAIRENIEK 716
A RL I K + K P+ DV+L A+A ++GAD++ + + A A+R+
Sbjct: 181 ADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQ---- 236
Query: 717 DIERERRKMENPEAMXXXXXXXXXXIKAVHFEESMKYARRSVSDAD 762
E R+K N + + HFEE+ K R S+S D
Sbjct: 237 --EMARQKSGNEKG--------ELKVSHKHFEEAFKKVRSSISKKD 272
Score = 199 bits (507), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 105/261 (40%), Positives = 161/261 (61%), Gaps = 11/261 (4%)
Query: 212 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 271
V + D+G + ++ + P+R+P FK++G+ P G+LL GPPG GKTL+A+AVAN
Sbjct: 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVAN 66
Query: 272 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEV 331
E+G F + GPE+++ GESE +R+ F+ A+ +AP +IF DE+D++ P+R
Sbjct: 67 ESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGA 126
Query: 332 ERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEI 391
R+V+QLLT MDGL++R V +M ATNRP+ IDPA+ R GR D+ + +G+P RL I
Sbjct: 127 SVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAI 186
Query: 392 LRIHTKNMK---LAEDVDLERVAKDTH--GYVGSDLAALCTEAALQCIREKMDVIDLEDE 446
L+ TKN L DV+LE +A D Y G+DL+AL EA++ +R++M +E
Sbjct: 187 LKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSGNE 246
Query: 447 TIDAEVLNSMAVTNEHFQTAL 467
+ V+++HF+ A
Sbjct: 247 K------GELKVSHKHFEEAF 261
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 220 bits (561), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 99/228 (43%), Positives = 147/228 (64%), Gaps = 1/228 (0%)
Query: 486 SWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 545
++ D+ G D K E+ E V+Y + P +F+K G KGVL GPPG GKTLLAKAIA E
Sbjct: 10 TFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68
Query: 546 CQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTXXXX 605
+ F ++ G + + M+ G + VR++F++A+++APC++F DE+D++ QRG+
Sbjct: 69 AKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGH 128
Query: 606 XXXXRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRL 665
+ LNQ+L EMDG + + +I ATNRPD++DPALLRPGR D+ + + LPD R
Sbjct: 129 DEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGRE 188
Query: 666 QIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIREN 713
QI K +R+ P++PD+D + +AR T GFSGAD+ + A +A R N
Sbjct: 189 QILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN 236
Score = 190 bits (482), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 99/233 (42%), Positives = 147/233 (63%), Gaps = 4/233 (1%)
Query: 214 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET 273
+ DV G + ++ ELVE LR P F+ +G K PKG+L+ GPPG+GKTL+A+A+A E
Sbjct: 11 FADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69
Query: 274 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHG---E 330
FF I+G + + G S +R FE+A+K AP IIFIDE+D++ +R G +
Sbjct: 70 KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHD 129
Query: 331 VERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 390
+ ++Q+L MDG + +IV+ ATNRP+ +DPAL R GRFDR++ +G+PD GR +
Sbjct: 130 EREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQ 189
Query: 391 ILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDL 443
IL++H + + LA D+D +A+ T G+ G+DLA L EAAL R V+ +
Sbjct: 190 ILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSM 242
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 212 bits (540), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 109/266 (40%), Positives = 171/266 (64%), Gaps = 22/266 (8%)
Query: 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 266
E++ + YD VGG+ KQ+ +I+E++ELP++HP+LF+S+G+ PKG++LYGPPG+GKTL+A
Sbjct: 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199
Query: 267 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREK 326
RAVA+ T F ++G E++ K GE +R+ F A ++APSIIF+DE+DSI R +
Sbjct: 200 RAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVE 259
Query: 327 THG----EVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGV 382
G EV+R ++ +LL +DG ++ ++ ++ ATNR + +DPAL R GR DR+I+
Sbjct: 260 GSGGGDSEVQRTML-ELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPP 318
Query: 383 PDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVID 442
P R EILRIH++ M L ++L +VA+ +G G+D+ +CTEA + +RE+
Sbjct: 319 PSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRER----- 373
Query: 443 LEDETIDAEVLNSMAVTNEHFQTALG 468
+ VT E F+ A+G
Sbjct: 374 ------------RIHVTQEDFELAVG 387
Score = 209 bits (533), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 101/234 (43%), Positives = 147/234 (62%)
Query: 479 VVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 538
V +VP+ +++ +GGL +E++E ++ PV+HPE FE G++ KGV+ YGPPG GKTLL
Sbjct: 139 VEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLL 198
Query: 539 AKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 598
A+A+A+ FI V G EL+ + GE VRE+F AR+ AP ++F DE+DSI + R
Sbjct: 199 ARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRV 258
Query: 599 SSTXXXXXXXXRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL 658
+ R + +LL ++DG K + II ATNR DI+DPALLRPGR+D+ I P
Sbjct: 259 EGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPP 318
Query: 659 PDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRE 712
P A+R +I + RK ++ ++L +A +G SGAD+ VC A YA+RE
Sbjct: 319 PSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE 372
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 211 bits (537), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 106/244 (43%), Positives = 150/244 (61%)
Query: 470 SNPSALRETVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYG 529
++P T E ++++ IGGL REL+E ++ P+++PE F++ G+ P KGVL YG
Sbjct: 163 TDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYG 222
Query: 530 PPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDE 589
PPG GKTLLAKA+A ANFI ++ + GES +RE+F A++ PC++F DE
Sbjct: 223 PPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDE 282
Query: 590 LDSIATQRGSSTXXXXXXXXRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGR 649
+D+I +R S R L +LLT+MDG + II ATNRPD +DPALLRPGR
Sbjct: 283 VDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGR 342
Query: 650 LDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYA 709
LD+ + IPLP+EA RL+IFK K + + D A + + GF+GADI A +A
Sbjct: 343 LDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFA 402
Query: 710 IREN 713
IR++
Sbjct: 403 IRDD 406
Score = 209 bits (532), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 160/238 (67%), Gaps = 3/238 (1%)
Query: 211 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVA 270
E+ +D +GG+ +Q+ ++RE++ELPL++P++F+ +G+KPPKG+LLYGPPG+GKTL+A+AVA
Sbjct: 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVA 236
Query: 271 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKR--EKTH 328
GA F I+ K GES +R+ F A+++ P IIF+DE+D+I +R E T
Sbjct: 237 ATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS 296
Query: 329 GEVE-RRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 387
+ E +R + +LLT MDG + ++ ATNRP+++DPAL R GR DR+++I +P+E G
Sbjct: 297 ADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAG 356
Query: 388 RLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLED 445
RLEI +IHT +K + D E K + G+ G+D+ TEA IR+ D I+ +D
Sbjct: 357 RLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDD 414
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 210 bits (534), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 108/235 (45%), Positives = 154/235 (65%), Gaps = 3/235 (1%)
Query: 214 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET 273
Y D+GG+ Q+ +I+E VELPL HP+L++ +G+KPPKG++LYG PG+GKTL+A+AVAN+T
Sbjct: 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 240
Query: 274 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVER 333
A F I G E++ K G+ R+ F+ A +NAPSI+FIDE+D+I KR ++ ER
Sbjct: 241 SATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGER 300
Query: 334 ---RIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 390
R + +LL +DG R V V+ ATN+ ++DPAL R GR DR+I PD + +
Sbjct: 301 EIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKK 360
Query: 391 ILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLED 445
IL IHT M L+EDV+LE + G+D+ A+CTEA L +RE+ + ED
Sbjct: 361 ILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAED 415
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 142/230 (61%)
Query: 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAI 542
P S+ DIGGL++ +E++E+V+ P+ HPE +E+ G+ P KGV+ YG PG GKTLLAKA+
Sbjct: 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAV 236
Query: 543 ANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTX 602
AN+ A F+ + G EL+ + G+ R+IF A ++AP ++F DE+D+I T+R S
Sbjct: 237 ANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNS 296
Query: 603 XXXXXXXRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEA 662
R + +LL ++DG + + V +I ATN+ + +DPAL+RPGR+D+ I PD +
Sbjct: 297 GGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLS 356
Query: 663 SRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRE 712
++ +I K +S DV+L L SGADI +C A A+RE
Sbjct: 357 TKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE 406
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 207 bits (528), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/286 (40%), Positives = 167/286 (58%), Gaps = 15/286 (5%)
Query: 447 TIDAEVLN-SMAVTNEHFQTAL-------GTSNPSALRETVVEVPNVSWEDIGGLDNVKR 498
T+D E+L SM+V AL S+ S + E E P+V++ D+GGLD K+
Sbjct: 125 TLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGEN--EKPDVTYADVGGLDMQKQ 182
Query: 499 ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 558
E++E V+ P+ + +E+ G+ P +GVL YGPPG GKT+L KA+AN +A FI V G E
Sbjct: 183 EIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242
Query: 559 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTXXXXXXXXRVLNQLLTE 618
+ + GE VR++F AR++AP ++F DE+DSIAT+R + R+L +LLT+
Sbjct: 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQ 302
Query: 619 MDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIP-LPDEASRLQIFKACLRKSPI 677
MDG + V +I ATNR D +DPALLRPGRLD+ I P L D R IF K +
Sbjct: 303 MDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSL 362
Query: 678 SPDVDLSALARYTHGFSGADITEVCQRACKYAIREN----IEKDIE 719
+P+ DL +L SGA I + Q A A+R+N ++ D+E
Sbjct: 363 APEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLE 408
Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/242 (44%), Positives = 146/242 (60%), Gaps = 7/242 (2%)
Query: 211 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVA 270
+V Y DVGG+ Q +IRE VELPL L++ IG+ PP+G+LLYGPPG+GKT++ +AVA
Sbjct: 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVA 227
Query: 271 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGE 330
N T A F +NG E + K GE +R F A +NAPSIIFIDE+DSIA KR
Sbjct: 228 NSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTG 287
Query: 331 VER---RIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDI-GVPDEV 386
+R RI+ +LLT MDG +V V+ ATNR +++DPAL R GR DR+I+ + D
Sbjct: 288 SDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRR 347
Query: 387 GRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVI---DL 443
R I M LA + DL+ + G+ +AA+ EA L+ +R+ VI DL
Sbjct: 348 ERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDL 407
Query: 444 ED 445
E+
Sbjct: 408 EE 409
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/244 (47%), Positives = 158/244 (64%), Gaps = 8/244 (3%)
Query: 212 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 271
V + DVGG + + +++E+VE L+ P F IG + PKGILL GPPG+GKTL+ARAVA
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71
Query: 272 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKT---- 327
E FF I+G + + G + +R F +A+ +AP I+FIDE+D++ R
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131
Query: 328 HGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 387
H E E+ + +QLL MDG S+ +IVM ATNRP+ +DPAL R GRFD++I + PD +G
Sbjct: 132 HDEREQTL-NQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLG 190
Query: 388 RLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLED-- 445
R +IL IHT+N LAEDV+LE +AK T G+VG+DL L EAAL RE D I ++D
Sbjct: 191 RKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFE 250
Query: 446 ETID 449
E ID
Sbjct: 251 EAID 254
Score = 201 bits (510), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 94/232 (40%), Positives = 143/232 (61%), Gaps = 1/232 (0%)
Query: 485 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 544
V+++D+GG + EL+E V++ ++ P KF + G KG+L GPPG GKTLLA+A+A
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71
Query: 545 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTXXX 604
E F + G + + ++ G A VR++F +A+ APC++F DE+D++ RG+
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131
Query: 605 XXXXXRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASR 664
+ LNQLL EMDG ++K+ + ++ ATNRPDI+DPALLRPGR D+ I + PD R
Sbjct: 132 HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191
Query: 665 LQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEK 716
+I + R P++ DV+L +A+ T GF GAD+ + A A RE +K
Sbjct: 192 KKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDK 243
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 205 bits (521), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 115/244 (47%), Positives = 157/244 (64%), Gaps = 8/244 (3%)
Query: 212 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 271
V + DVGG + + +++E+VE L+ P F IG + PKGILL GPPG+G TL+ARAVA
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAG 71
Query: 272 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKT---- 327
E FF I+G + + G + +R F +A+ +AP I+FIDE+D++ R
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131
Query: 328 HGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 387
H E E+ + +QLL MDG S+ +IVM ATNRP+ +DPAL R GRFD++I + PD +G
Sbjct: 132 HDEREQTL-NQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLG 190
Query: 388 RLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLED-- 445
R +IL IHT+N LAEDV+LE +AK T G+VG+DL L EAAL RE D I ++D
Sbjct: 191 RKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFE 250
Query: 446 ETID 449
E ID
Sbjct: 251 EAID 254
Score = 198 bits (504), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 93/232 (40%), Positives = 142/232 (61%), Gaps = 1/232 (0%)
Query: 485 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 544
V+++D+GG + EL+E V++ ++ P KF + G KG+L GPPG G TLLA+A+A
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAG 71
Query: 545 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTXXX 604
E F + G + + ++ G A VR++F +A+ APC++F DE+D++ RG+
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131
Query: 605 XXXXXRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASR 664
+ LNQLL EMDG ++K+ + ++ ATNRPDI+DPALLRPGR D+ I + PD R
Sbjct: 132 HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191
Query: 665 LQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEK 716
+I + R P++ DV+L +A+ T GF GAD+ + A A RE +K
Sbjct: 192 KKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDK 243
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 203 bits (516), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 152/238 (63%), Gaps = 3/238 (1%)
Query: 211 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVA 270
+V Y DVGG + Q+ ++RE+VELPL P+ F ++G+ PPKGILLYGPPG+GKTL ARAVA
Sbjct: 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVA 264
Query: 271 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKR--EKTH 328
N T A F + G E++ K GE +R+ FE A IIF DE+D++ R +
Sbjct: 265 NRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAG 324
Query: 329 GEVE-RRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 387
G+ E +R + +L+T +DG R ++ VM ATNRPN++DPAL R GR DR+++ +PD G
Sbjct: 325 GDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEG 384
Query: 388 RLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLED 445
R I RIH+K+M + + E +++ G++L ++CTEA + IR + V +D
Sbjct: 385 RANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKD 442
Score = 191 bits (486), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 141/241 (58%)
Query: 471 NPSALRETVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGP 530
+PS TV E P+V++ D+GG + +L+E V+ P+ PE+F G+ P KG+L YGP
Sbjct: 192 DPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGP 251
Query: 531 PGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDEL 590
PG GKTL A+A+AN A FI V G EL+ + GE VRE+F+ AR C++FFDE+
Sbjct: 252 PGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEI 311
Query: 591 DSIATQRGSSTXXXXXXXXRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRL 650
D++ R R + +L+T++DG + + + ++ ATNRP+ +DPALLRPGR+
Sbjct: 312 DAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRI 371
Query: 651 DQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAI 710
D+ + LPD R IF+ + + + ++R +GA++ VC A +AI
Sbjct: 372 DRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAI 431
Query: 711 R 711
R
Sbjct: 432 R 432
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 194 bits (492), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 97/233 (41%), Positives = 137/233 (58%)
Query: 479 VVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 538
V E P ++ D+GGLD EL E + P++ +KF+ G+ KG L YGPPG GKTLL
Sbjct: 172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLL 231
Query: 539 AKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 598
A+A A + A F+ + P+L+ M+ GE VR+ F A++ AP ++F DELD+I T+R
Sbjct: 232 ARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRF 291
Query: 599 SSTXXXXXXXXRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL 658
S R + +LL ++DG ++ V ++ ATNR D++DPALLR GRLD+ I PL
Sbjct: 292 DSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPL 351
Query: 659 PDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIR 711
P E SR QI + RK D++ LAR T F+GA + V A A+R
Sbjct: 352 PSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALR 404
Score = 189 bits (481), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 96/235 (40%), Positives = 146/235 (62%), Gaps = 3/235 (1%)
Query: 214 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET 273
Y DVGG+ KQ+ ++ E + LP++ FK +G++ PKG L+YGPPG+GKTL+ARA A +T
Sbjct: 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239
Query: 274 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKR---EKTHGE 330
A F + P+++ GE +R AF A++ AP+IIFIDELD+I KR EK+
Sbjct: 240 NATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDR 299
Query: 331 VERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 390
+R + +LL +DG S V V+ ATNR + +DPAL R GR DR+I+ +P E R +
Sbjct: 300 EVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQ 359
Query: 391 ILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLED 445
IL+IH++ M +D++ + +A+ T + G+ L A+ EA + +R + ED
Sbjct: 360 ILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHED 414
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 193 bits (491), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 146/239 (61%), Gaps = 1/239 (0%)
Query: 478 TVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTL 537
+ E P V+++D+ G + K EL+E V++ +++P +F + G KGVL GPPG GKT
Sbjct: 21 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 79
Query: 538 LAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 597
LA+A+A E + FI+ G + + M+ G A VR++F+ A++ APC++F DE+D++ +R
Sbjct: 80 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 139
Query: 598 GSSTXXXXXXXXRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIP 657
GS + LNQLL EMDG + ++ ATNRPDI+DPALLRPGR D+ I I
Sbjct: 140 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 199
Query: 658 LPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEK 716
PD R QI + R P++ DVDL+ LA+ T GF GAD+ + A A RE K
Sbjct: 200 APDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRK 258
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 107/241 (44%), Positives = 150/241 (62%), Gaps = 7/241 (2%)
Query: 211 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVA 270
+V + DV G + +++E+VE L++P F +G + PKG+LL GPPG GKT +ARAVA
Sbjct: 27 KVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA 85
Query: 271 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHG- 329
E F +G + + G + +R FE A+++AP I+FIDE+D++ KR G
Sbjct: 86 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG 145
Query: 330 --EVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 387
+ + ++QLL MDG + ++VM ATNRP+ +DPAL R GRFDR+I I PD G
Sbjct: 146 GNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 205
Query: 388 RLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIRE---KMDVIDLE 444
R +ILRIH + LAEDVDL +AK T G+VG+DL L EAAL RE K+ + DLE
Sbjct: 206 REQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLE 265
Query: 445 D 445
+
Sbjct: 266 E 266
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 193 bits (491), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 102/242 (42%), Positives = 147/242 (60%), Gaps = 1/242 (0%)
Query: 475 LRETVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCG 534
L + E P V+++D+ G + K EL+E V++ +++P +F + G KGVL GPPG G
Sbjct: 3 LGSVLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVG 61
Query: 535 KTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 594
KT LA+A+A E + FI+ G + + M+ G A VR++F+ A++ APC++F DE+D++
Sbjct: 62 KTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 121
Query: 595 TQRGSSTXXXXXXXXRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLI 654
+RGS + LNQLL EMDG + ++ ATNRPDI+DPALLRPGR D+ I
Sbjct: 122 RKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQI 181
Query: 655 YIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENI 714
I PD R QI + R P++ DVDL+ LA+ T GF GAD+ + A A RE
Sbjct: 182 AIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR 241
Query: 715 EK 716
K
Sbjct: 242 RK 243
Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/241 (44%), Positives = 150/241 (62%), Gaps = 7/241 (2%)
Query: 211 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVA 270
+V + DV G + +++E+VE L++P F +G + PKG+LL GPPG GKT +ARAVA
Sbjct: 12 KVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA 70
Query: 271 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHG- 329
E F +G + + G + +R FE A+++AP I+FIDE+D++ KR G
Sbjct: 71 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG 130
Query: 330 --EVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 387
+ + ++QLL MDG + ++VM ATNRP+ +DPAL R GRFDR+I I PD G
Sbjct: 131 GNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 190
Query: 388 RLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIRE---KMDVIDLE 444
R +ILRIH + LAEDVDL +AK T G+VG+DL L EAAL RE K+ + DLE
Sbjct: 191 REQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLE 250
Query: 445 D 445
+
Sbjct: 251 E 251
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 193 bits (491), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 146/239 (61%), Gaps = 1/239 (0%)
Query: 478 TVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTL 537
+ E P V+++D+ G + K EL+E V++ +++P +F + G KGVL GPPG GKT
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 88
Query: 538 LAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 597
LA+A+A E + FI+ G + + M+ G A VR++F+ A++ APC++F DE+D++ +R
Sbjct: 89 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 148
Query: 598 GSSTXXXXXXXXRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIP 657
GS + LNQLL EMDG + ++ ATNRPDI+DPALLRPGR D+ I I
Sbjct: 149 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 208
Query: 658 LPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEK 716
PD R QI + R P++ DVDL+ LA+ T GF GAD+ + A A RE K
Sbjct: 209 APDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRK 267
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/241 (44%), Positives = 150/241 (62%), Gaps = 7/241 (2%)
Query: 211 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVA 270
+V + DV G + +++E+VE L++P F +G + PKG+LL GPPG GKT +ARAVA
Sbjct: 36 KVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA 94
Query: 271 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHG- 329
E F +G + + G + +R FE A+++AP I+FIDE+D++ KR G
Sbjct: 95 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG 154
Query: 330 --EVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 387
+ + ++QLL MDG + ++VM ATNRP+ +DPAL R GRFDR+I I PD G
Sbjct: 155 GNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 214
Query: 388 RLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIRE---KMDVIDLE 444
R +ILRIH + LAEDVDL +AK T G+VG+DL L EAAL RE K+ + DLE
Sbjct: 215 REQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLE 274
Query: 445 D 445
+
Sbjct: 275 E 275
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 193 bits (490), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 1/238 (0%)
Query: 479 VVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 538
+ E P V+++D+ G + K EL+E V++ +++P +F + G KGVL GPPG GKT L
Sbjct: 31 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 89
Query: 539 AKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 598
A+A+A E + FI+ G + + M+ G A VR++F+ A++ APC++F DE+D++ +RG
Sbjct: 90 ARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRG 149
Query: 599 SSTXXXXXXXXRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL 658
S + LNQLL EMDG + ++ ATNRPDI+DPALLRPGR D+ I I
Sbjct: 150 SGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDA 209
Query: 659 PDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEK 716
PD R QI + R P++ DVDL+ LA+ T GF GAD+ + A A RE K
Sbjct: 210 PDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRK 267
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/238 (44%), Positives = 148/238 (62%), Gaps = 4/238 (1%)
Query: 211 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVA 270
+V + DV G + +++E+VE L++P F +G + PKG+LL GPPG GKT +ARAVA
Sbjct: 36 KVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA 94
Query: 271 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKT--H 328
E F +G + + G + +R FE A+++AP I+FIDE+D++ KR
Sbjct: 95 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG 154
Query: 329 GEVER-RIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 387
G ER + ++QLL MDG + ++VM ATNRP+ +DPAL R GRFDR+I I PD G
Sbjct: 155 GNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 214
Query: 388 RLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLED 445
R +ILRIH + LAEDVDL +AK T G+VG+DL L EAAL RE I ++D
Sbjct: 215 REQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKD 272
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 192 bits (489), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 146/248 (58%), Gaps = 12/248 (4%)
Query: 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIA 543
VS++D+ G+ K E++E V Y ++ PE+F + G KG L GPPGCGKTLLAKA+A
Sbjct: 2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVA 60
Query: 544 NECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSS-TX 602
E Q F+++ G E + + G A VR +F +AR APC+++ DE+D++ +R ++ +
Sbjct: 61 TEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSG 120
Query: 603 XXXXXXXRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEA 662
+ LNQLL EMDGM V ++ +TNR DI+D AL+RPGRLD+ ++I LP
Sbjct: 121 FSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQ 180
Query: 663 SRLQIFKACLRKSPISPDVDLSA--LARYTHGFSGADITEVCQRACKYAIRE-------- 712
R +IF+ L+ ++ + LA T GFSGADI +C A +A RE
Sbjct: 181 ERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTL 240
Query: 713 NIEKDIER 720
N E +ER
Sbjct: 241 NFEYAVER 248
Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/231 (40%), Positives = 136/231 (58%), Gaps = 7/231 (3%)
Query: 212 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 271
V + DV G+ + ++RE V+ L+ P+ F +G K PKG LL GPPG GKTL+A+AVA
Sbjct: 3 VSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61
Query: 272 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEV 331
E F + G E + + G + +R F+EA AP I++IDE+D++ KR T
Sbjct: 62 EAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGF 121
Query: 332 ----ERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 387
E + ++QLL MDG+ + HVIV+ +TNR + +D AL R GR DR + I +P
Sbjct: 122 SNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQE 181
Query: 388 RLEILRIHTKNMKLAEDVDL--ERVAKDTHGYVGSDLAALCTEAALQCIRE 436
R EI H K++KL + +R+A+ T G+ G+D+A +C EAAL RE
Sbjct: 182 RREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAARE 232
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 190 bits (482), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 146/229 (63%), Gaps = 6/229 (2%)
Query: 212 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 271
V + D+ G + ++ E+V+ L++P+ + ++G K PKG+LL GPPG+GKTL+A+AVA
Sbjct: 8 VRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66
Query: 272 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREK---TH 328
E FF + G + G S +R FE A+K APSIIFIDE+D+I R
Sbjct: 67 EAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVS 126
Query: 329 GEVER-RIVSQLLTLMDGLKS-RAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEV 386
G ER + ++QLL MDG S A VIV+ ATNRP +DPAL R GRFDR++ + PD
Sbjct: 127 GNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFN 186
Query: 387 GRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIR 435
GR+EIL++H K +KLA DV+L+ VAK T G G+DLA + EAAL R
Sbjct: 187 GRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGR 235
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 93/246 (37%), Positives = 147/246 (59%), Gaps = 4/246 (1%)
Query: 481 EVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK 540
E PNV ++D+ G + K E+ E V + +++PE++ G KGVL GPPG GKTLLAK
Sbjct: 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAK 62
Query: 541 AIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS- 599
A+A E F S+ G + M+ G + VR++F+ A++ AP ++F DE+D+I R +
Sbjct: 63 AVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAG 122
Query: 600 STXXXXXXXXRVLNQLLTEMDGMNAKKT-VFIIGATNRPDIIDPALLRPGRLDQLIYIPL 658
+ LNQLL EMDG ++ V ++ ATNRP+I+DPAL+RPGR D+ + +
Sbjct: 123 GVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDK 182
Query: 659 PDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDI 718
PD R++I K ++ ++ DV+L +A+ T G +GAD+ + A A R N +K++
Sbjct: 183 PDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN-QKEV 241
Query: 719 ERERRK 724
++ K
Sbjct: 242 RQQHLK 247
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 175 bits (443), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 140/239 (58%), Gaps = 8/239 (3%)
Query: 476 RETVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGK 535
R ++ E PNV WED+ GL+ K L+E V PV+ P F K P+ G+L YGPPG GK
Sbjct: 15 RGSLSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGK 73
Query: 536 TLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 595
+ LAKA+A E + F SV +L++ W GESE V+++F AR++ P ++F DE+D++
Sbjct: 74 SYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTG 133
Query: 596 QRGSSTXXXXXXXXRVLNQLLTEMDGM-NAKKTVFIIGATNRPDIIDPALLRPGRLDQLI 654
RG R+ +LL +M+G+ N + V ++GATN P +D A+ R R ++ I
Sbjct: 134 TRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRI 188
Query: 655 YIPLPDEASRLQIFKACLRKSP-ISPDVDLSALARYTHGFSGADITEVCQRACKYAIRE 712
YIPLPD A+R +F+ + +P + D L T G+SG+DI V + A IR+
Sbjct: 189 YIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 247
Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/236 (38%), Positives = 140/236 (59%), Gaps = 5/236 (2%)
Query: 212 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 271
V ++DV G+ ++E V LP++ P LFK KP GILLYGPPG+GK+ +A+AVA
Sbjct: 24 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVAT 82
Query: 272 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEV 331
E + FF ++ +++SK GESE +++ F A +N PSIIFIDE+D++ R + E
Sbjct: 83 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGESEA 142
Query: 332 ERRIVSQLLTLMDGLKSRAH-VIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 390
RRI ++LL M+G+ + + V+V+GATN P +D A+RR RF+R I I +PD R
Sbjct: 143 SRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTT 200
Query: 391 ILRIHTKNMK-LAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLED 445
+ I+ + + D + T GY GSD+A + +A +Q IR+ +D
Sbjct: 201 MFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKD 256
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/234 (39%), Positives = 137/234 (58%), Gaps = 8/234 (3%)
Query: 481 EVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK 540
E PNV WED+ GL+ K L+E V PV+ P F K P+ G+L YGPPG GK+ LAK
Sbjct: 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAK 102
Query: 541 AIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSS 600
A+A E + F SV +L++ W GESE V+++F AR++ P ++F D++D++ RG
Sbjct: 103 AVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG 162
Query: 601 TXXXXXXXXRVLNQLLTEMDGM-NAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 659
R+ +LL +M+G+ N + V ++GATN P +D A+ R R ++ IYIPLP
Sbjct: 163 ---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLP 217
Query: 660 DEASRLQIFKACLRKSP-ISPDVDLSALARYTHGFSGADITEVCQRACKYAIRE 712
D A+R +F+ + +P + D L T G+SG+DI V + A IR+
Sbjct: 218 DLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/236 (38%), Positives = 140/236 (59%), Gaps = 5/236 (2%)
Query: 212 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 271
V ++DV G+ ++E V LP++ P LFK KP GILLYGPPG+GK+ +A+AVA
Sbjct: 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVAT 106
Query: 272 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEV 331
E + FF ++ +++SK GESE +++ F A +N PSIIFID++D++ R + E
Sbjct: 107 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEA 166
Query: 332 ERRIVSQLLTLMDGLKSRAH-VIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 390
RRI ++LL M+G+ + + V+V+GATN P +D A+RR RF+R I I +PD R
Sbjct: 167 SRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTT 224
Query: 391 ILRIHTKNM-KLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLED 445
+ I+ + + D + T GY GSD+A + +A +Q IR+ +D
Sbjct: 225 MFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKD 280
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 172 bits (437), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 92/234 (39%), Positives = 137/234 (58%), Gaps = 8/234 (3%)
Query: 481 EVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK 540
E PNV WED+ GL+ K L+E V PV+ P F K P+ G+L YGPPG GK+ LAK
Sbjct: 29 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAK 87
Query: 541 AIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSS 600
A+A E + F SV +L++ W GESE V+++F AR++ P ++F D++D++ RG
Sbjct: 88 AVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG 147
Query: 601 TXXXXXXXXRVLNQLLTEMDGM-NAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 659
R+ +LL +M+G+ N + V ++GATN P +D A+ R R ++ IYIPLP
Sbjct: 148 ---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLP 202
Query: 660 DEASRLQIFKACLRKSP-ISPDVDLSALARYTHGFSGADITEVCQRACKYAIRE 712
D A+R +F+ + +P + D L T G+SG+DI V + A IR+
Sbjct: 203 DLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 256
Score = 162 bits (411), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 91/236 (38%), Positives = 140/236 (59%), Gaps = 5/236 (2%)
Query: 212 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 271
V ++DV G+ ++E V LP++ P LFK KP GILLYGPPG+GK+ +A+AVA
Sbjct: 33 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVAT 91
Query: 272 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEV 331
E + FF ++ +++SK GESE +++ F A +N PSIIFID++D++ R + E
Sbjct: 92 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEA 151
Query: 332 ERRIVSQLLTLMDGLKSRAH-VIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 390
RRI ++LL M+G+ + + V+V+GATN P +D A+RR RF+R I I +PD R
Sbjct: 152 SRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTT 209
Query: 391 ILRIHTKNMK-LAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLED 445
+ I+ + + D + T GY GSD+A + +A +Q IR+ +D
Sbjct: 210 MFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKD 265
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 172 bits (436), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 92/234 (39%), Positives = 137/234 (58%), Gaps = 8/234 (3%)
Query: 481 EVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK 540
E PNV WED+ GL+ K L+E V PV+ P F K P+ G+L YGPPG GK+ LAK
Sbjct: 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAK 69
Query: 541 AIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSS 600
A+A E + F SV +L++ W GESE V+++F AR++ P ++F D++D++ RG
Sbjct: 70 AVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG 129
Query: 601 TXXXXXXXXRVLNQLLTEMDGM-NAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 659
R+ +LL +M+G+ N + V ++GATN P +D A+ R R ++ IYIPLP
Sbjct: 130 ---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLP 184
Query: 660 DEASRLQIFKACLRKSP-ISPDVDLSALARYTHGFSGADITEVCQRACKYAIRE 712
D A+R +F+ + +P + D L T G+SG+DI V + A IR+
Sbjct: 185 DLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 238
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/236 (38%), Positives = 140/236 (59%), Gaps = 5/236 (2%)
Query: 212 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 271
V ++DV G+ ++E V LP++ P LFK KP GILLYGPPG+GK+ +A+AVA
Sbjct: 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVAT 73
Query: 272 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEV 331
E + FF ++ +++SK GESE +++ F A +N PSIIFID++D++ R + E
Sbjct: 74 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEA 133
Query: 332 ERRIVSQLLTLMDGLKSRAH-VIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 390
RRI ++LL M+G+ + + V+V+GATN P +D A+RR RF+R I I +PD R
Sbjct: 134 SRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTT 191
Query: 391 ILRIHTKNMK-LAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLED 445
+ I+ + + D + T GY GSD+A + +A +Q IR+ +D
Sbjct: 192 MFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKD 247
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 155/302 (51%), Gaps = 22/302 (7%)
Query: 475 LRETVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCG 534
+ E + P V+WEDI G++ K ++E V +P+ P+ F P KG+L +GPPG G
Sbjct: 71 MNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGL-RGPPKGILLFGPPGTG 129
Query: 535 KTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 594
KTL+ K IA++ A F S+ L + W GE E VR +F AR P V+F DE+DS+
Sbjct: 130 KTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLL 189
Query: 595 TQRGSSTXXXXXXXXRVLNQLLTEMDG--MNAKKTVFIIGATNRPDIIDPALLRPGRLDQ 652
+QRG R+ + L ++DG +++ + ++GATNRP ID A R RL +
Sbjct: 190 SQRGDG---EHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVK 244
Query: 653 LIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEVCQRACKYAIR 711
+YIPLP+ ++R QI + K + ++ + + + FSGAD+T++C+ A IR
Sbjct: 245 RLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIR 304
Query: 712 ENIEKDIERERRKMENPEAMXXXXXXXXXXIKAVHFEESMKYARRSVSDADIRKYQLFAQ 771
DI P I + FE + + R SVS D+ Y+ + +
Sbjct: 305 SLQTADIATITPDQVRP-------------IAYIDFENAFRTVRPSVSPKDLELYENWNK 351
Query: 772 TL 773
T
Sbjct: 352 TF 353
Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 110/332 (33%), Positives = 171/332 (51%), Gaps = 21/332 (6%)
Query: 150 YFMESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEP-----VKRE 204
YF P+ K D GGM+ + T+P P E EP + E
Sbjct: 19 YFQSMVPPIPKQDGGEQNGGMQCKPYGAGPTEPAH-----PVDERLKNLEPKMIELIMNE 73
Query: 205 DEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTL 264
+ V ++D+ GV A I+E+V P+ P +F + PPKGILL+GPPG+GKTL
Sbjct: 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGL-RGPPKGILLFGPPGTGKTL 132
Query: 265 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKR 324
I + +A+++GA FF I+ + SK GE E +R F A P++IFIDE+DS+ +R
Sbjct: 133 IGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQR 192
Query: 325 EKTHGEVERRIVSQLLTLMDG--LKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGV 382
E RRI ++ L +DG S ++V+GATNRP ID A RR R + + I +
Sbjct: 193 GDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPL 250
Query: 383 PDEVGRLEI-LRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVI 441
P+ R +I + + +K + ++E++ + + + G+D+ LC EA+L IR +
Sbjct: 251 PEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIR-SLQTA 309
Query: 442 DLEDETIDAEVLNSMAVTNEHFQTALGTSNPS 473
D+ TI + + +A + F+ A T PS
Sbjct: 310 DI--ATITPDQVRPIAYID--FENAFRTVRPS 337
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 162 bits (410), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 136/237 (57%), Gaps = 9/237 (3%)
Query: 479 VVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 538
V+E PNV W D+ GL+ K L+E V P++ P F +P +G+L +GPPG GK+ L
Sbjct: 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYL 61
Query: 539 AKAIANECQ-ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 597
AKA+A E + F S+ +L++ W GESE V+ +F AR++ P ++F DE+DS+
Sbjct: 62 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC--- 118
Query: 598 GSSTXXXXXXXXRVLNQLLTEMDGMNA-KKTVFIIGATNRPDIIDPALLRPGRLDQLIYI 656
GS + R+ + L +M G+ + ++GATN P ++D A+ R R ++ IYI
Sbjct: 119 GSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYI 176
Query: 657 PLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEVCQRACKYAIRE 712
PLP+ +R +FK L + S + D L R T G+SGADI+ + + A +R+
Sbjct: 177 PLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 138/234 (58%), Gaps = 9/234 (3%)
Query: 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 266
ER N V + DV G+ ++E V LP++ P LF P +GILL+GPPG+GK+ +A
Sbjct: 5 ERPN-VKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLA 62
Query: 267 RAVANETG-AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKRE 325
+AVA E + FF I+ +++SK GESE ++ F+ A +N PSIIFIDE+DS+ R
Sbjct: 63 KAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRS 122
Query: 326 KTHGEVERRIVSQLLTLMDGLK-SRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPD 384
+ E RRI ++ L M G+ ++V+GATN P +D A+RR RF++ I I +P+
Sbjct: 123 ENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPE 180
Query: 385 EVGRLEILRIH--TKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIRE 436
R + ++H T L E D + + T GY G+D++ + +A +Q +R+
Sbjct: 181 PHARAAMFKLHLGTTQNSLTE-ADFRELGRKTDGYSGADISIIVRDALMQPVRK 233
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 162 bits (410), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 136/237 (57%), Gaps = 9/237 (3%)
Query: 479 VVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 538
V+E PNV W D+ GL+ K L+E V P++ P F +P +G+L +GPPG GK+ L
Sbjct: 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYL 183
Query: 539 AKAIANECQ-ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 597
AKA+A E + F S+ +L++ W GESE V+ +F AR++ P ++F DE+DS+
Sbjct: 184 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC--- 240
Query: 598 GSSTXXXXXXXXRVLNQLLTEMDGMNAKKT-VFIIGATNRPDIIDPALLRPGRLDQLIYI 656
GS + R+ + L +M G+ + ++GATN P ++D A+ R R ++ IYI
Sbjct: 241 GSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYI 298
Query: 657 PLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEVCQRACKYAIRE 712
PLP+ +R +F+ L + S + D L R T G+SGADI+ + + A +R+
Sbjct: 299 PLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/233 (37%), Positives = 140/233 (60%), Gaps = 7/233 (3%)
Query: 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 266
ER N V + DV G+ ++E V LP++ P LF P +GILL+GPPG+GK+ +A
Sbjct: 127 ERPN-VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRT-PWRGILLFGPPGTGKSYLA 184
Query: 267 RAVANE-TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKRE 325
+AVA E + FF I+ +++SK GESE ++ F+ A +N PSIIFIDE+DS+ R
Sbjct: 185 KAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRS 244
Query: 326 KTHGEVERRIVSQLLTLMDGLK-SRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPD 384
+ E RRI ++ L M G+ ++V+GATN P +D A+RR RF++ I I +P+
Sbjct: 245 ENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPE 302
Query: 385 EVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYVGSDLAALCTEAALQCIRE 436
R + R+H + + + + D + + + T GY G+D++ + +A +Q +R+
Sbjct: 303 AHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 155 bits (393), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 154/302 (50%), Gaps = 25/302 (8%)
Query: 475 LRETVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCG 534
L E V V W DI G D K+ LQE V P PE F +P+KG+L +GPPG G
Sbjct: 8 LDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGL-RAPAKGLLLFGPPGNG 66
Query: 535 KTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 594
KTLLA+A+A EC A F+++ L + + G+ E VR +F AR P ++F DE+DS+
Sbjct: 67 KTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLL 126
Query: 595 TQRGSSTXXXXXXXXRVLNQLLTEMDGMNAK---KTVFIIGATNRPDIIDPALLRPGRLD 651
+ + R+ + L E DG+ + ++ ATNRP +D A LR R
Sbjct: 127 S---ERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFT 181
Query: 652 QLIYIPLPDEASRLQIFKACLRK--SPISPDVDLSALARYTHGFSGADITEVCQRACKYA 709
+ +Y+ LPDE +R + L+K SP+ + L LA+ T G+SG+D+T + + A
Sbjct: 182 KRVYVSLPDEQTRELLLNRLLQKQGSPLDTEA-LRRLAKITDGYSGSDLTALAKDAALEP 240
Query: 710 IRENIEKDIERERRKMENPEAMXXXXXXXXXXIKAVHFEESMKYARRSVSDADIRKYQLF 769
IRE + E+ K + AM I F S+K RRSV+ + Y+ +
Sbjct: 241 IRE-----LNVEQVKCLDISAM--------RAITEQDFHSSLKRIRRSVAPQSLNSYEKW 287
Query: 770 AQ 771
+Q
Sbjct: 288 SQ 289
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/262 (38%), Positives = 146/262 (55%), Gaps = 14/262 (5%)
Query: 211 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVA 270
+V + D+ G ++E+V LP P+LF + P KG+LL+GPPG+GKTL+ARAVA
Sbjct: 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRA-PAKGLLLFGPPGNGKTLLARAVA 75
Query: 271 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGE 330
E A F I+ + SK G+ E +R F A PSIIFIDE+DS+ +R + E
Sbjct: 76 TECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHE 135
Query: 331 VERRIVSQLLTLMDGLKSRA---HVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 387
RR+ ++ L DGL ++V+ ATNRP +D A R RF + + + +PDE
Sbjct: 136 ASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQT 193
Query: 388 RLEIL-RIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLEDE 446
R +L R+ K + L R+AK T GY GSDL AL +AAL+ IRE L E
Sbjct: 194 RELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRE------LNVE 247
Query: 447 TIDAEVLNSM-AVTNEHFQTAL 467
+ +++M A+T + F ++L
Sbjct: 248 QVKCLDISAMRAITEQDFHSSL 269
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 155 bits (392), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 149/286 (52%), Gaps = 24/286 (8%)
Query: 485 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 544
V ++DI G D K+ LQE V P PE F +P++G+L +GPPG GKT+LAKA+A
Sbjct: 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGL-RAPARGLLLFGPPGNGKTMLAKAVAA 170
Query: 545 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTXXX 604
E A F ++ L + + GE E VR +F AR+ P ++F D++DS+ +R
Sbjct: 171 ESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCER---REGE 227
Query: 605 XXXXXRVLNQLLTEMDGMNAK--KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEA 662
R+ + L E DG+ + V ++GATNRP +D A+LR R + +Y+ LP+E
Sbjct: 228 HDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEE 285
Query: 663 SR--LQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIER 720
+R L C + SP++ +L+ LAR T G+SG+D+T + + A IRE
Sbjct: 286 TRLLLLKNLLCKQGSPLT-QKELAQLARMTDGYSGSDLTALAKDAALGPIRE-------- 336
Query: 721 ERRKMENPEAMXXXXXXXXXXIKAVHFEESMKYARRSVSDADIRKY 766
PE + I+ F ES+K +RSVS + Y
Sbjct: 337 -----LKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAY 377
Score = 150 bits (379), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 137/228 (60%), Gaps = 6/228 (2%)
Query: 212 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 271
V +DD+ G ++E+V LP P+LF + P +G+LL+GPPG+GKT++A+AVA
Sbjct: 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRA-PARGLLLFGPPGNGKTMLAKAVAA 170
Query: 272 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEV 331
E+ A FF I+ + SK GE E +R F A + PSIIFID++DS+ +R + +
Sbjct: 171 ESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDA 230
Query: 332 ERRIVSQLLTLMDGLKSRA--HVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRL 389
RR+ ++ L DG++S V+VMGATNRP +D A+ R RF + + + +P+E RL
Sbjct: 231 SRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRL 288
Query: 390 EILRIHT-KNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIRE 436
+L+ K +L ++A+ T GY GSDL AL +AAL IRE
Sbjct: 289 LLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRE 336
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 82/169 (48%), Gaps = 16/169 (9%)
Query: 247 KPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 306
+P + +LL+GPPG GKT +A +A+E G + +GP I G+ + L + EE +
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP--GDLAAILANSLEEGD- 92
Query: 307 NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRA------HVIVMGATNR 360
I+FIDE+ ++ + E+ V ++ + G +R ++GAT R
Sbjct: 93 ----ILFIDEIHRLSRQAEEHLYPAMEDFVMDIV-IGQGPAARTIRLELPRFTLIGATTR 147
Query: 361 PNSID-PALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLE 408
P I P L RFG + ++ P+E+ + + +++ E+ LE
Sbjct: 148 PGLITAPLLSRFGIVE-HLEYYTPEELAQGVMRDARLLGVRITEEAALE 195
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 14/140 (10%)
Query: 521 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQS 580
P + +L +GPPG GKT LA IA+E N GP + E ++ I + +
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILANSLEE 90
Query: 581 APCVLFFDELDSIATQRGSSTXXXXXXXXRVLNQLLTEMDGMNAKKTVF----IIGATNR 636
+LF DE+ ++ Q + V++ ++ + + +IGAT R
Sbjct: 91 G-DILFIDEIHRLSRQ--AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTR 147
Query: 637 PDIID-PALLRPGRLDQLIY 655
P +I P L R G ++ L Y
Sbjct: 148 PGLITAPLLSRFGIVEHLEY 167
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 82/169 (48%), Gaps = 16/169 (9%)
Query: 247 KPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 306
+P + +LL+GPPG GKT +A +A+E G + +GP I G+ + L + EE +
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP--GDLAAILANSLEEGD- 92
Query: 307 NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRA------HVIVMGATNR 360
I+FIDE+ ++ + E+ V ++ + G +R ++GAT R
Sbjct: 93 ----ILFIDEIHRLSRQAEEHLYPAMEDFVMDIV-IGQGPAARTIRLELPRFTLIGATTR 147
Query: 361 PNSID-PALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLE 408
P I P L RFG + ++ P+E+ + + +++ E+ LE
Sbjct: 148 PGLITAPLLSRFGIVE-HLEYYTPEELAQGVMRDARLLGVRITEEAALE 195
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 14/140 (10%)
Query: 521 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQS 580
P + +L +GPPG GKT LA IA+E N GP + E ++ I + +
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILANSLEE 90
Query: 581 APCVLFFDELDSIATQRGSSTXXXXXXXXRVLNQLLTEMDGMNAKKTVF----IIGATNR 636
+LF DE+ ++ Q + V++ ++ + + +IGAT R
Sbjct: 91 G-DILFIDEIHRLSRQ--AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTR 147
Query: 637 PDIID-PALLRPGRLDQLIY 655
P +I P L R G ++ L Y
Sbjct: 148 PGLITAPLLSRFGIVEHLEY 167
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 82/169 (48%), Gaps = 16/169 (9%)
Query: 247 KPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 306
+P + +LL+GPPG GKT +A +A+E G + +GP I G+ + L + EE +
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP--GDLAAILANSLEEGD- 92
Query: 307 NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRA------HVIVMGATNR 360
I+FIDE+ ++ + E+ V ++ + G +R ++GAT R
Sbjct: 93 ----ILFIDEIHRLSRQAEEHLYPAMEDFVMDIV-IGQGPAARTIRLELPRFTLIGATTR 147
Query: 361 PNSID-PALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLE 408
P I P L RFG + ++ P+E+ + + +++ E+ LE
Sbjct: 148 PGLITAPLLSRFGIVE-HLEYYTPEELAQGVMRDARLLGVRITEEAALE 195
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 14/140 (10%)
Query: 521 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQS 580
P + +L +GPPG GKT LA IA+E N GP + E ++ I + +
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILANSLEE 90
Query: 581 APCVLFFDELDSIATQRGSSTXXXXXXXXRVLNQLLTEMDGMNAKKTVF----IIGATNR 636
+LF DE+ ++ Q + V++ ++ + + +IGAT R
Sbjct: 91 GD-ILFIDEIHRLSRQ--AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTR 147
Query: 637 PDIID-PALLRPGRLDQLIY 655
P +I P L R G ++ L Y
Sbjct: 148 PGLITAPLLSRFGIVEHLEY 167
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 40/63 (63%)
Query: 383 PDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVID 442
P+E RL+IL+IH++ M L ++L ++A+ G G+++ +CTEA + +RE+ +
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT 70
Query: 443 LED 445
ED
Sbjct: 71 QED 73
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 659 PDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRE 712
P+E +RL I K RK ++ ++L +A G SGA++ VC A YA+RE
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE 64
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 20/122 (16%)
Query: 234 PLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEI--MSKLAG 291
PLRH PK IL+ GP G GKT IAR +A A F + + + +
Sbjct: 43 PLRHEV--------TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94
Query: 292 ESESNLRK-------AFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ-LLTLM 343
E +S +R A + E+N I+FIDE+D I K E + +V R V + LL L+
Sbjct: 95 EVDSIIRDLTDSAGGAIDAVEQNG--IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLV 152
Query: 344 DG 345
+G
Sbjct: 153 EG 154
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 492 GLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 551
L N R +Q +Q P+ H ++P K +L GP G GKT +A+ +A A FI
Sbjct: 30 ALRNRWRRMQ--LQEPLRHE-------VTP-KNILMIGPTGVGKTEIARRLAKLANAPFI 79
Query: 552 SVKGPELLTMWF--GESEANVREIFDKARQSAPCV-----LFFDELDSI 593
V+ + + + E ++ +R++ D A + V +F DE+D I
Sbjct: 80 KVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKI 128
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 383 PDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVID 442
P+E RL+IL+IH++ L ++L ++A+ G G+++ +CTEA +RE+ +
Sbjct: 3 PNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALRERRVHVT 62
Query: 443 LED 445
ED
Sbjct: 63 QED 65
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 657 PLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRE 712
P P+E +RL I K RK ++ ++L +A G SGA++ VC A YA+RE
Sbjct: 1 PPPNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALRE 56
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 23/165 (13%)
Query: 233 LPLRHPQLFKSIGVKPP-KGILLYGP-PGSGKTLIARAVANETGAFFFLINGPEIMSKLA 290
LP + FKSI K I+L+ P PG+GKT +A+A+ ++ A +NG +
Sbjct: 30 LPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFV 89
Query: 291 GESESNLRKA--FEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKS 348
+N A F+ +K +I IDE D + H L + M+ S
Sbjct: 90 RGPLTNFASAASFDGRQK----VIVIDEFDRSGLAESQRH----------LRSFMEAYSS 135
Query: 349 RAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILR 393
+I+ N+ID ++ R I G P + ++E+++
Sbjct: 136 NCSIIITA-----NNIDGIIKPLQSRCRVITFGQPTDEDKIEMMK 175
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 515 EKFGMSPSKG----VLFYGP-PGCGKTLLAKAIANECQANFISVKGPE 557
E F SKG ++ + P PG GKT +AKA+ ++ A+ + V G +
Sbjct: 36 ETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD 83
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 382 VPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVI 441
+PD GR I RIH+K+M + + E +++ G++L ++CTEA + IR + V
Sbjct: 7 LPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVA 66
Query: 442 DLED 445
+D
Sbjct: 67 TEKD 70
Score = 29.3 bits (64), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 658 LPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIR 711
LPD R IF+ + + + ++R +GA++ VC A +AIR
Sbjct: 7 LPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIR 60
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 102/256 (39%), Gaps = 64/256 (25%)
Query: 367 ALRRFGRFDREIDIGVPDEVGRLEILR--IH-TKNMKLAEDVDLERVAKDTHGYVGSDLA 423
AL+ G +I V +GR + + IH T K ++ ++ K H YVG++
Sbjct: 49 ALQALGLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTE-- 106
Query: 424 ALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVT--------------NEHFQTALGT 469
L IRE E + A VLN++ V+ NE +A GT
Sbjct: 107 ----HILLGLIRE--------GEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSAAGT 154
Query: 470 ---SNPSALRETVVEVPNVSWEDIGGLDNV---KRELQETVQYPVEHPEKFEKFGMSPSK 523
+N L ++ ++ ED LD V +E+Q + E
Sbjct: 155 NSNANTPTLDSLARDLTAIAKED--SLDPVIGRSKEIQRVI----------EVLSRRTKN 202
Query: 524 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-----------TMWFGESEANVRE 572
+ G PG GKT +A+ +A + N + PE+L T + GE E +++
Sbjct: 203 NPVLIGEPGVGKTAIAEGLAQQIINNEV----PEILRDKRVMTLDMGTKYRGEFEDRLKK 258
Query: 573 IFDKARQSAPCVLFFD 588
+ D+ RQ+ +LF D
Sbjct: 259 VMDEIRQAGNIILFID 274
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 19/76 (25%)
Query: 253 LLYGPPGSGKTLIARAVANETGAFFFLING--PEIM-----------SKLAGESESNLRK 299
+L G PG GKT IA +A + +IN PEI+ +K GE E L+K
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQ------IINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKK 258
Query: 300 AFEEAEKNAPSIIFID 315
+E + I+FID
Sbjct: 259 VMDEIRQAGNIILFID 274
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 102/256 (39%), Gaps = 64/256 (25%)
Query: 367 ALRRFGRFDREIDIGVPDEVGRLEILR--IH-TKNMKLAEDVDLERVAKDTHGYVGSDLA 423
AL+ G +I V +GR + + IH T K ++ ++ K H YVG++
Sbjct: 49 ALQALGLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTE-- 106
Query: 424 ALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVT--------------NEHFQTALGT 469
L IRE E + A VLN++ V+ NE +A GT
Sbjct: 107 ----HILLGLIRE--------GEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSAAGT 154
Query: 470 ---SNPSALRETVVEVPNVSWEDIGGLDNV---KRELQETVQYPVEHPEKFEKFGMSPSK 523
+N L ++ ++ ED LD V +E+Q + E
Sbjct: 155 NSNANTPTLDSLARDLTAIAKED--SLDPVIGRSKEIQRVI----------EVLSRRTKN 202
Query: 524 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-----------TMWFGESEANVRE 572
+ G PG GKT +A+ +A + N + PE+L T + GE E +++
Sbjct: 203 NPVLIGEPGVGKTAIAEGLAQQIINNEV----PEILRDKRVMTLDMGTKYRGEFEDRLKK 258
Query: 573 IFDKARQSAPCVLFFD 588
+ D+ RQ+ +LF D
Sbjct: 259 VMDEIRQAGNIILFID 274
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 19/76 (25%)
Query: 253 LLYGPPGSGKTLIARAVANETGAFFFLING--PEIM-----------SKLAGESESNLRK 299
+L G PG GKT IA +A + +IN PEI+ +K GE E L+K
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQ------IINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKK 258
Query: 300 AFEEAEKNAPSIIFID 315
+E + I+FID
Sbjct: 259 VMDEIRQAGNIILFID 274
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 486 SWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 545
S ++ G +NVK++L ++ E + VL GPPG GKT LA IA+E
Sbjct: 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGKTTLAHIIASE 74
Query: 546 CQANFISVKGPELL 559
Q N GP L+
Sbjct: 75 LQTNIHVTSGPVLV 88
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 32/179 (17%)
Query: 252 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 311
+LL GPPG GKT +A +A+E + +GP ++ + ++ E+ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTSLERG--DV 105
Query: 312 IFIDELDSIAPKREKTHGEVERRIVSQL----LTLMDGLKSRAHVI--------VMGATN 359
+FIDE+ + + VE + S + + +M G A I ++G+T
Sbjct: 106 LFIDEI-------HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGSTT 158
Query: 360 RPNSIDPALR-RFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTHG 416
R + LR RFG E+D E+ EI++ M + ED E +AK + G
Sbjct: 159 RSGLLSSPLRSRFG-IILELDFYTVKELK--EIIKRAASLMDVEIEDAAAEMIAKRSRG 214
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 486 SWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 545
S ++ G +NVK++L ++ E + VL GPPG GKT LA IA+E
Sbjct: 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGKTTLAHIIASE 74
Query: 546 CQANFISVKGPELL 559
Q N GP L+
Sbjct: 75 LQTNIHVTSGPVLV 88
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 32/179 (17%)
Query: 252 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 311
+LL GPPG GKT +A +A+E + +GP ++ + ++ E+ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTSLERG--DV 105
Query: 312 IFIDELDSIAPKREKTHGEVERRIVSQL----LTLMDGLKSRAHVI--------VMGATN 359
+FIDE+ + + VE + S + + +M G A I ++GAT
Sbjct: 106 LFIDEI-------HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158
Query: 360 RPNSIDPALR-RFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTHG 416
R + LR RFG E+D E+ EI++ M + ED E +AK + G
Sbjct: 159 RSGLLSSPLRSRFG-IILELDFYTVKELK--EIIKRAASLMDVEIEDAAAEMIAKRSRG 214
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 486 SWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 545
S ++ G +NVK++L ++ E + VL GPPG GKT LA IA+E
Sbjct: 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGKTTLAHIIASE 74
Query: 546 CQANFISVKGPELL 559
Q N GP L+
Sbjct: 75 LQTNIHVTSGPVLV 88
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 32/179 (17%)
Query: 252 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 311
+LL GPPG GKT +A +A+E + +GP ++ + ++ E+ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTSLERG--DV 105
Query: 312 IFIDELDSIAPKREKTHGEVERRIVSQL----LTLMDGLKSRAHVI--------VMGATN 359
+FIDE+ + + VE + S + + +M G A I ++GAT
Sbjct: 106 LFIDEI-------HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATV 158
Query: 360 RPNSIDPALR-RFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTHG 416
R + LR RFG E+D E+ EI++ M + ED E +AK + G
Sbjct: 159 RSGLLSSPLRSRFG-IILELDFYTVKELK--EIIKRAASLMDVEIEDAAAEMIAKRSRG 214
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 486 SWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 545
S ++ G +NVK++L ++ E + VL GPPG GKT LA IA+E
Sbjct: 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGKTTLAHIIASE 74
Query: 546 CQANFISVKGPELL 559
Q N GP L+
Sbjct: 75 LQTNIHVTSGPVLV 88
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 32/179 (17%)
Query: 252 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 311
+LL GPPG GKT +A +A+E + +GP ++ + ++ E+ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTSLERG--DV 105
Query: 312 IFIDELDSIAPKREKTHGEVERRIVSQL----LTLMDGLKSRAHVI--------VMGATN 359
+FIDE+ + + VE + S + + +M G A I ++GAT
Sbjct: 106 LFIDEI-------HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158
Query: 360 RPNSIDPALR-RFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTHG 416
R + LR RFG E+D E+ EI++ M + ED E +AK + G
Sbjct: 159 RSGLLSSPLRSRFG-IILELDFYTVKELK--EIIKRAASLMDVEIEDAAAEMIAKRSRG 214
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 486 SWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 545
S ++ G +NVK++L ++ E + VL GPPG GKT LA IA+E
Sbjct: 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGKTTLAHIIASE 74
Query: 546 CQANFISVKGPELL 559
Q N GP L+
Sbjct: 75 LQTNIHVTSGPVLV 88
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 30/178 (16%)
Query: 252 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 311
+LL GPPG GKT +A +A+E + +GP ++ + ++ E+ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTSLERG--DV 105
Query: 312 IFIDELDSIAPKREKTHGEVERRIVSQL----LTLMDGLKSRAHVI--------VMGATN 359
+FIDE+ + + VE + S + + +M G A I ++GAT
Sbjct: 106 LFIDEI-------HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158
Query: 360 RPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTHG 416
R + LR E+D E+ EI++ M + ED E +AK + G
Sbjct: 159 RSGLLSSPLRSAFGIILELDFYTVKELK--EIIKRAASLMDVEIEDAAAEMIAKRSRG 214
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 248 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESES----NLRKAFEE 303
P +LL GPP SGKT +A +A E+ F I P+ K+ G SE+ ++K F++
Sbjct: 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDD 119
Query: 304 AEKNAPSIIFIDELDSI 320
A K+ S + +D+++ +
Sbjct: 120 AYKSQLSCVVVDDIERL 136
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 520 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE--ANVREIFDKA 577
+P VL GPP GKT LA IA E FI + P+ + + F E+ +++IFD A
Sbjct: 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM-IGFSETAKCQAMKKIFDDA 120
Query: 578 RQSAPCVLFFDELDSI 593
+S + D+++ +
Sbjct: 121 YKSQLSCVVVDDIERL 136
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 248 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESES----NLRKAFEE 303
P +LL GPP SGKT +A +A E+ F I P+ K+ G SE+ ++K F++
Sbjct: 62 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDD 118
Query: 304 AEKNAPSIIFIDELDSI 320
A K+ S + +D+++ +
Sbjct: 119 AYKSQLSCVVVDDIERL 135
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 520 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE--ANVREIFDKA 577
+P VL GPP GKT LA IA E FI + P+ + + F E+ +++IFD A
Sbjct: 61 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM-IGFSETAKCQAMKKIFDDA 119
Query: 578 RQSAPCVLFFDELDSI 593
+S + D+++ +
Sbjct: 120 YKSQLSCVVVDDIERL 135
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 486 SWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 545
S ++ G +NVK++L ++ E + VL GPPG G+T LA IA+E
Sbjct: 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGRTTLAHIIASE 74
Query: 546 CQANFISVKGPELL 559
Q N GP L+
Sbjct: 75 LQTNIHVTSGPVLV 88
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 32/179 (17%)
Query: 252 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 311
+LL GPPG G+T +A +A+E + +GP ++ + ++ E+ +
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTSLERG--DV 105
Query: 312 IFIDELDSIAPKREKTHGEVERRIVSQL----LTLMDGLKSRAHVI--------VMGATN 359
+FIDE+ + + VE + S + + +M G A I ++GAT
Sbjct: 106 LFIDEI-------HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158
Query: 360 RPNSIDPALR-RFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTHG 416
R + LR RFG E+D E+ EI++ M + ED E +AK + G
Sbjct: 159 RSGLLSSPLRSRFG-IILELDFYTVKELK--EIIKRAASLMDVEIEDAAAEMIAKRSRG 214
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 20/83 (24%)
Query: 252 ILLYGPPGSGKTLIARAVANE-------------TGAFFFLINGPEIMSKLAGESESNLR 298
ILL GP GSGKTL+A+ +A T A + + I+++L S+ N++
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 134
Query: 299 KAFEEAEKNAPSIIFIDELDSIA 321
KA I+FIDE+D I+
Sbjct: 135 KA-------QKGIVFIDEIDKIS 150
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 20/83 (24%)
Query: 525 VLFYGPPGCGKTLLAKAIANE-------------CQANFISVKGPELLTMWFGESEANVR 571
+L GP G GKTL+A+ +A +A ++ +LT S+ NV+
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 134
Query: 572 EIFDKARQSAPCVLFFDELDSIA 594
KA++ ++F DE+D I+
Sbjct: 135 ----KAQKG---IVFIDEIDKIS 150
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 95/405 (23%), Positives = 157/405 (38%), Gaps = 75/405 (18%)
Query: 223 QMAQIRELVELPLRHPQLFKSIGV---KPPKGILLYGPPGSGKTLIARAVANETGAFFFL 279
Q+A++ + L R +L ++I V + LL G G GKT IA +A + +
Sbjct: 178 QLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLA------WRI 231
Query: 280 ING--PEIM----------------SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIA 321
+ G PE+M +K G+ E + ++ E++ SI+FIDE+ +I
Sbjct: 232 VQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTII 291
Query: 322 PKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRP--NSIDPALRRFGRFDREID 379
+ G+V+ L+ L S + V+G+T ++I R R ++ID
Sbjct: 292 GAGAASGGQVD------AANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKID 345
Query: 380 IGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKM- 438
I P ++I I+ K D+ AK V E A++ I ++
Sbjct: 346 ITEPSIEETVQI--INGLKPKYEAHHDVRYTAKAVRAAV---------ELAVKYINDRHL 394
Query: 439 --DVIDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVP--NVSWEDIGGLD 494
ID+ DE L M V+ + + ++ ++ + +P +VS D L
Sbjct: 395 PDKAIDVIDEAGARARL--MPVSKR--KKTVNVADIESVVARIARIPEKSVSQSDRDTLK 450
Query: 495 NVKREL------QETVQYPVEHPEKFEKFGMS----PSKGVLFYGPPGCGKTLLAKAIAN 544
N+ L Q+ + K + G+ P LF GP G GKT
Sbjct: 451 NLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKT-------- 502
Query: 545 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDE 589
E G ELL F SE R + + P + FD+
Sbjct: 503 EVTVQLSKALGIELLR--FDMSEYMERHTVSRLIGAPPGYVGFDQ 545
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 252 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM-SKLAGESESN-----LRKAFEEAE 305
ILL GP GSGKTL+A +A F + + + + GE N L+K + +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 306 KNAPSIIFIDELDSIAPKRE 325
K I++ID++D I+ K +
Sbjct: 114 KAQRGIVYIDQIDKISRKSD 133
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
Query: 525 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM-WFGESEAN-VREIFDK----AR 578
+L GP G GKTLLA+ +A F L + GE N ++++ K +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 579 QSAPCVLFFDELDSIATQRGSSTXXXXXXXXRVLNQLLTEMDGMNA 624
++ +++ D++D I+ + + + V LL ++G A
Sbjct: 114 KAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVA 159
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 252 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM-SKLAGESESN-----LRKAFEEAE 305
ILL GP GSGKTL+A +A F + + + + GE N L+K + +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 306 KNAPSIIFIDELDSIAPKRE 325
K I++ID++D I+ K +
Sbjct: 114 KAQRGIVYIDQIDKISRKSD 133
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
Query: 525 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM-WFGESEAN-VREIFDK----AR 578
+L GP G GKTLLA+ +A F L + GE N ++++ K +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 579 QSAPCVLFFDELDSIATQRGSSTXXXXXXXXRVLNQLLTEMDGMNA 624
++ +++ D++D I+ + + + V LL ++G A
Sbjct: 114 KAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVA 159
>pdb|2ZRH|A Chain A, Msreca Q196a Form Iv
pdb|2ZRI|A Chain A, Msreca Q196a Adp Form Iv
pdb|2ZRJ|A Chain A, Msreca Q196a Atpgs Form Iv
pdb|2ZRK|A Chain A, Msreca Q196a Datp Form Iv
pdb|2ZRL|A Chain A, Msreca Q196a Datp Form Ii'
Length = 349
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 27/124 (21%)
Query: 249 PKG--ILLYGPPGSGKTLIA-RAVAN--ETGAFFFLING-----PEIMSKLAGESESNL- 297
P+G I +YGP SGKT +A AVAN G I+ PE KL +++S L
Sbjct: 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLV 118
Query: 298 ------RKAFEEAE----KNAPSIIFIDELDSIAPKRE------KTHGEVERRIVSQLLT 341
+A E A+ A II ID + ++ P+ E +H ++ R++SQ L
Sbjct: 119 SQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 178
Query: 342 LMDG 345
M G
Sbjct: 179 KMTG 182
>pdb|1UBC|A Chain A, Structure Of Reca Protein
pdb|1UBE|A Chain A, Msreca-Adp Complex
pdb|1UBF|A Chain A, Msreca-Atpgs Complex
pdb|1UBG|A Chain A, Msreca-Datp Complex
pdb|2G88|A Chain A, Msreca-datp Complex
pdb|2ODN|A Chain A, Msreca-Datp Complex
pdb|2ODW|A Chain A, Msreca-Atp-Gama-S Complex
pdb|2OE2|A Chain A, Msreca-Native-Low Humidity 95%
pdb|2OEP|A Chain A, Msreca-adp-complex
pdb|2OES|A Chain A, Msreca-Native-Ssb
pdb|2OFO|A Chain A, Msreca-native
pdb|2ZR7|A Chain A, Msreca Native Form Ii'
pdb|2ZRM|A Chain A, Msreca Datp Form Iv
pdb|2ZRN|A Chain A, Msreca Form Iv
pdb|2ZRO|A Chain A, Msreca Adp Form Iv
pdb|2ZRP|A Chain A, Msreca Datp Form Ii'
Length = 349
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 27/124 (21%)
Query: 249 PKG--ILLYGPPGSGKTLIA-RAVAN--ETGAFFFLING-----PEIMSKLAGESESNL- 297
P+G I +YGP SGKT +A AVAN G I+ PE KL +++S L
Sbjct: 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLV 118
Query: 298 ------RKAFEEAE----KNAPSIIFIDELDSIAPKRE------KTHGEVERRIVSQLLT 341
+A E A+ A II ID + ++ P+ E +H ++ R++SQ L
Sbjct: 119 SQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 178
Query: 342 LMDG 345
M G
Sbjct: 179 KMTG 182
>pdb|2ZRC|A Chain A, Msreca Q196n Form Iv
pdb|2ZRD|A Chain A, Msreca Q196n Adp Form Iv
pdb|2ZRE|A Chain A, Msreca Q196n Atpgs Form Iv
pdb|2ZRF|A Chain A, Msreca Q196n Datp Form Iv
pdb|2ZRG|A Chain A, Msreca Q196n Datp Form Ii'
Length = 349
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 27/124 (21%)
Query: 249 PKG--ILLYGPPGSGKTLIA-RAVAN--ETGAFFFLING-----PEIMSKLAGESESNL- 297
P+G I +YGP SGKT +A AVAN G I+ PE KL +++S L
Sbjct: 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLV 118
Query: 298 ------RKAFEEAE----KNAPSIIFIDELDSIAPKRE------KTHGEVERRIVSQLLT 341
+A E A+ A II ID + ++ P+ E +H ++ R++SQ L
Sbjct: 119 SQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 178
Query: 342 LMDG 345
M G
Sbjct: 179 KMTG 182
>pdb|2ZR0|A Chain A, Msreca-Q196e Mutant
pdb|2ZR9|A Chain A, Msreca Q196e Datp Form Iv
pdb|2ZRA|A Chain A, Msreca Q196e Atpgs
pdb|2ZRB|A Chain A, Msreca Q196e Form Ii'
Length = 349
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 27/124 (21%)
Query: 249 PKG--ILLYGPPGSGKTLIA-RAVAN--ETGAFFFLING-----PEIMSKLAGESESNL- 297
P+G I +YGP SGKT +A AVAN G I+ PE KL +++S L
Sbjct: 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLV 118
Query: 298 ------RKAFEEAE----KNAPSIIFIDELDSIAPKRE------KTHGEVERRIVSQLLT 341
+A E A+ A II ID + ++ P+ E +H ++ R++SQ L
Sbjct: 119 SQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 178
Query: 342 LMDG 345
M G
Sbjct: 179 KMTG 182
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 250 KGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMSKLAGESE---SNLRKAF 301
+ +LL GPPG+GKT +A A+A E G+ F + G E+ S ++E N R+A
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI 120
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 523 KGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLTMWFGESE 567
+ VL GPPG GKT LA AIA E + F + G E+ + ++E
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTE 110
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 250 KGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMSKLAGESE---SNLRKAFEEA 304
+ +LL GPPG+GKT +A A+A E G+ F G E+ S ++E N R+A
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTEVLXENFRRAIGLR 137
Query: 305 EKNAPSIIFID 315
K P I D
Sbjct: 138 IKEGPPGIIQD 148
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 523 KGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLTMWFGESE 567
+ VL GPPG GKT LA AIA E + F G E+ + ++E
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTE 124
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 14/108 (12%)
Query: 492 GLDNVKRELQETVQYPVEHPEKFEKFGM---SPSKGVLFYGPPGCGKTLLAKAIANEC-- 546
GL VK ++ET + + +K G+ +P+ + F G PG GKT +A +A
Sbjct: 35 GLKPVKDRIRETAALLLVERAR-QKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR 93
Query: 547 -----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDE 589
+ + +SV +L+ + G + +E+ +A VLF DE
Sbjct: 94 LGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDE 138
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 14/108 (12%)
Query: 492 GLDNVKRELQETVQYPVEHPEKFEKFGM---SPSKGVLFYGPPGCGKTLLAKAIANEC-- 546
GL VK ++ET + + +K G+ +P+ + F G PG GKT +A +A
Sbjct: 28 GLKPVKDRIRETAALLLVERAR-QKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR 86
Query: 547 -----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDE 589
+ + +SV +L+ + G + +E+ +A VLF DE
Sbjct: 87 LGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDE 131
>pdb|3VLF|B Chain B, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLF|D Chain D, Crystal Structure Of Yeast Proteasome Interacting Protein
Length = 88
Score = 36.2 bits (82), Expect = 0.076, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 384 DEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDL 443
D GR I RIH+K+ + + E +++ G++L ++CTEA IR + V
Sbjct: 2 DLEGRANIFRIHSKSXSVERGIRWELISRLCPNSTGAELRSVCTEAGXFAIRARRKVATE 61
Query: 444 ED 445
+D
Sbjct: 62 KD 63
>pdb|2DVW|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|D Chain D, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|3AJI|B Chain B, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|D Chain D, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 83
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 667 IFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIREN----IEKDIER 720
IF K +S +VDL SGADI +CQ + A+REN + KD E+
Sbjct: 9 IFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEK 66
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 396 TKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIRE 436
T M L+E+VDLE G+D+ ++C E+ + +RE
Sbjct: 14 TSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRE 54
>pdb|1G18|A Chain A, Reca-Adp-Alf4 Complex
pdb|1G19|A Chain A, Structure Of Reca Protein
pdb|1MO3|A Chain A, Reca-Adp Complex
pdb|1MO4|A Chain A, Reca-Atp-Gamma-S Complex
pdb|1MO5|A Chain A, Reca-Atp-Gamma-S-Mg Complex
pdb|1MO6|A Chain A, Reca-datp-mg Complex
Length = 350
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 27/124 (21%)
Query: 249 PKG--ILLYGPPGSGKTLIA-RAVAN--ETGAFFFLING-----PEIMSKLAGESESNL- 297
P+G I +YGP SGKT +A AVAN G I+ P+ KL +++S L
Sbjct: 58 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLV 117
Query: 298 ------RKAFEEAE----KNAPSIIFIDELDSIAPKRE------KTHGEVERRIVSQLLT 341
+A E A+ A I+ ID + ++ P+ E +H ++ R++SQ L
Sbjct: 118 SQPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALR 177
Query: 342 LMDG 345
M G
Sbjct: 178 KMTG 181
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 492 GLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 551
L N R +Q +Q P+ H ++P K +L GP G GKT +A+ +A A FI
Sbjct: 30 ALRNRWRRMQ--LQEPLRHE-------VTP-KNILMIGPTGVGKTEIARRLAKLANAPFI 79
Query: 552 SVKGPELLTMWF--GESEANVREIFDKA 577
V+ + + + E ++ +R++ D A
Sbjct: 80 KVEATKFTEVGYVGKEVDSIIRDLTDSA 107
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 234 PLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEI--MSKLAG 291
PLRH PK IL+ GP G GKT IAR +A A F + + + +
Sbjct: 43 PLRHE--------VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94
Query: 292 ESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLL 340
E +S +R + A K + IA R + E RI+ LL
Sbjct: 95 EVDSIIRDLTDSAMK-------LVRQQEIAKNRARAEDVAEERILDALL 136
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 298 RKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ-LLTLMDG 345
+KA + E+N I+FIDE+D I K E + +V R V + LL L++G
Sbjct: 242 QKAIDAVEQNG--IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 288
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 525 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPC- 583
++ +GPPG GKT LA+ IA A+ + +T E +RE ++ARQ+
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISA---VTSGVKE----IREAIERARQNRNAG 105
Query: 584 ---VLFFDEL 590
+LF DE+
Sbjct: 106 RRTILFVDEV 115
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 11/70 (15%)
Query: 252 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAP-- 309
++L+GPPG+GKT +A +A A + I + +G E +R+A E A +N
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANA-----DVERISAVTSGVKE--IREAIERARQNRNAG 105
Query: 310 --SIIFIDEL 317
+I+F+DE+
Sbjct: 106 RRTILFVDEV 115
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 235 LRHPQLFKSIGVKPPKGILLYGPPGSGKTLI 265
++H ++F + + +GI+L GPPGSGKT+I
Sbjct: 1035 IKHEKIFYDL-LNSKRGIILCGPPGSGKTMI 1064
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 80/191 (41%), Gaps = 37/191 (19%)
Query: 513 KFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE----------CQANFISVKGPELLTMW 562
KF G P +LFYGPPG GKT A+A E + N +G +++
Sbjct: 39 KFVDEGKLPH--LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQ 96
Query: 563 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTXXXXXXXXRVLNQLLTEMDGM 622
+ A+ R+IF K + ++ DE D++ T RV+ +
Sbjct: 97 IKDF-ASTRQIFSKGFK----LIILDEADAM-------TNAAQNALRRVIERY------- 137
Query: 623 NAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLR-KSPISPDV 681
K T F + A N + PALL + + + PLP EA +I + K +SP+
Sbjct: 138 -TKNTRFCVLA-NYAHKLTPALL--SQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNA 193
Query: 682 DLSALARYTHG 692
+ AL ++G
Sbjct: 194 E-KALIELSNG 203
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 235 LRHPQLFKSIGVKPPKGILLYGPPGSGKTLI 265
++H ++F + + +GI+L GPPGSGKT+I
Sbjct: 1254 IKHEKIFYDL-LNSKRGIILCGPPGSGKTMI 1283
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 250 KGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSK----------LAGESESNLRK 299
+ +LYGPPG GKT A VA E G N ++ SK L S K
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFK 137
Query: 300 AFEEAE--KNAPSIIFIDELDSIA 321
EEA+ +I +DE+D ++
Sbjct: 138 HNEEAQNLNGKHFVIIMDEVDGMS 161
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 523 KGVLFYGPPGCGKTLLAKAIANE 545
+ + YGPPG GKT A +A E
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQE 100
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 14/108 (12%)
Query: 492 GLDNVKRELQETVQYPVEHPEKFEKFGM---SPSKGVLFYGPPGCGKTLLAKAIANEC-- 546
GL VK ++ET + + +K G+ +P+ F G PG GKT +A A
Sbjct: 35 GLKPVKDRIRETAALLLVERAR-QKLGLAHETPTLHXSFTGNPGTGKTTVALKXAGLLHR 93
Query: 547 -----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDE 589
+ + +SV +L+ + G + +E+ +A VLF DE
Sbjct: 94 LGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---XGGVLFIDE 138
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 47/115 (40%), Gaps = 17/115 (14%)
Query: 228 RELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEI-- 285
R ++ PLRH PK IL GP G GKT IAR +A A F + +
Sbjct: 37 RXQLQEPLRHE--------VTPKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 88
Query: 286 MSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLL 340
+ + E +S +R + A K + IA R + E RI+ LL
Sbjct: 89 VGYVGKEVDSIIRDLTDSAXK-------LVRQQEIAKNRARAEDVAEERILDALL 136
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 504 VQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 563
+Q P+ H ++P K +L GP G GKT +A+ +A A FI V+ + + +
Sbjct: 40 LQEPLRHE-------VTP-KNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGY 91
Query: 564 --GESEANVREIFDKA 577
E ++ +R++ D A
Sbjct: 92 VGKEVDSIIRDLTDSA 107
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 298 RKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ-LLTLMDG 345
+KA + E+N I+FIDE+D I K E + +V R V + LL L++G
Sbjct: 242 QKAIDAVEQNG--IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 288
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 100/259 (38%), Gaps = 54/259 (20%)
Query: 462 HFQTALGTSNPSALRETVVEVPNVSWED-----IGGLDNVKRELQETVQYPVEHPEKFEK 516
H QT S +AL + +++ ++ E IG + ++R +Q ++ +P
Sbjct: 3 HMQTEHAESTYNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNP----- 57
Query: 517 FGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI--SVKGPELLTM----------WFG 564
+ G PG GKT + + +A + +KG ++++ + G
Sbjct: 58 ---------VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRG 108
Query: 565 ESEANVREIFDKARQS-APCVLFFDELDSIATQRGSSTXXXXXXXXRVLNQLLTEMDGMN 623
E E ++ + + QS +LF DEL ++ G+ +L L
Sbjct: 109 EFEERLKAVIQEVVQSQGEVILFIDELHTVV---GAGKAEGAVDAGNMLKPAL------- 158
Query: 624 AKKTVFIIGATN----RPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP 679
A+ + +IGAT R DPAL R Q +Y+ P + I + K +
Sbjct: 159 ARGELRLIGATTLDEYREIEKDPALERRF---QPVYVDEPTVEETISILRGLKEKYEVHH 215
Query: 680 DVDLS-----ALARYTHGF 693
V +S A A +H +
Sbjct: 216 GVRISDSAIIAAATLSHRY 234
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 57/137 (41%), Gaps = 25/137 (18%)
Query: 253 LLYGPPGSGKTLIARAVANE--TGAFFFLINGPEIMS----------KLAGESESNLRKA 300
+L G PG GKT I +A G + G I+S K GE E L+
Sbjct: 58 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 117
Query: 301 FEE-AEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATN 359
+E + I+FIDEL ++ K G V+ ++ +R + ++GAT
Sbjct: 118 IQEVVQSQGEVILFIDELHTVVGAG-KAEGAVD------AGNMLKPALARGELRLIGATT 170
Query: 360 ----RPNSIDPAL-RRF 371
R DPAL RRF
Sbjct: 171 LDEYREIEKDPALERRF 187
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 525 VLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 558
+LF GP G GKT LA I+ E AN + P +
Sbjct: 58 ILFSGPAGLGKTTLANIISYEXSANIKTTAAPXI 91
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 50/130 (38%), Gaps = 20/130 (15%)
Query: 252 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 311
IL GP G GKT +A ++ E A P I E +L + I
Sbjct: 58 ILFSGPAGLGKTTLANIISYEXSANIKTTAAPXI------EKSGDLAAILTNLSEG--DI 109
Query: 312 IFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVI--------VMGATNRPNS 363
+FIDE+ ++P E+ L ++ G A I ++GAT R
Sbjct: 110 LFIDEIHRLSPAIEEVLYPAXE---DYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGX 166
Query: 364 IDPALR-RFG 372
+ LR RFG
Sbjct: 167 LSNPLRDRFG 176
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 70/179 (39%), Gaps = 35/179 (19%)
Query: 525 VLFYGPPGCGKTLLAKAIANE-----CQANFISVKGPELLTMWFGESEANVREIFDKARQ 579
+LF GPPG GKT A A+A + + NFI + + + VR + +
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI------DVVRHKIKEFAR 94
Query: 580 SAPC------VLFFDELDSIATQRGSSTXXXXXXXXRVLNQLLTEMDGMNAKKTVFIIGA 633
+AP ++F DE D++ T R + M +K FI+
Sbjct: 95 TAPIGGAPFKIIFLDEADAL-------TADAQAALRRTME--------MYSKSCRFILSC 139
Query: 634 TNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHG 692
II+P R + P+P EA + ++ + C ++ + L AL + G
Sbjct: 140 NYVSRIIEPI---QSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG 195
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 252 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNL---RKAFEEAEKNA 308
+L GPPG+GKT A A+A + F N + ++ E + R +E + A
Sbjct: 41 LLFSGPPGTGKTATAIALARD----LFGENWRDNFIEMNASDERGIDVVRHKIKEFARTA 96
Query: 309 P------SIIFIDELDSI 320
P IIF+DE D++
Sbjct: 97 PIGGAPFKIIFLDEADAL 114
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 523 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF--GESEANVREIFDKA 577
K +L GP G GKT +A+ +A A FI V+ + + + E ++ +R++ D A
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 107
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 249 PKGILLYGPPGSGKTLIARAVANETGAFFFLING 282
PK IL+ GP G GKT IAR +A A F +
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 523 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF--GESEANVREIFDKA 577
K +L GP G GKT +A+ +A A FI V+ + + + E ++ +R++ D A
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 106
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 249 PKGILLYGPPGSGKTLIARAVANETGAFFFLING 282
PK IL+ GP G GKT IAR +A A F +
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 82
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 523 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF--GESEANVREIFDKA 577
K +L GP G GKT +A+ +A A FI V+ + + + E ++ +R++ D A
Sbjct: 57 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 113
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 249 PKGILLYGPPGSGKTLIARAVANETGAFFFLING 282
PK IL+ GP G GKT IAR +A A F +
Sbjct: 56 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 89
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 81/216 (37%), Gaps = 59/216 (27%)
Query: 505 QYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE-----CQANFISVKGPELL 559
++ V+ + + K G P +LF GPPG GKT A A+A E + NF+ + +
Sbjct: 31 EHIVKRLKHYVKTGSMPH--LLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD-- 86
Query: 560 TMWFGESEANV-REIFDKARQSAPC------VLFFDELDSIATQRGSSTXXXXXXXXRVL 612
E NV RE + ++ P ++F DE D++ TQ
Sbjct: 87 -----ERGINVIREKVKEFARTKPIGGASFKIIFLDEADAL-TQDA-------------- 126
Query: 613 NQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACL 672
Q L M + FI+ II+P SR IF
Sbjct: 127 QQALRRTMEMFSSNVRFILSCNYSSKIIEPI------------------QSRCAIF---- 164
Query: 673 RKSPISPDVDLSALARYTHGFSGADITEVCQRACKY 708
R P+ D D++ RY G ++TE +A Y
Sbjct: 165 RFRPLR-DEDIAKRLRYIAENEGLELTEEGLQAILY 199
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 13/78 (16%)
Query: 252 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESN---LRKAFEEAEKNA 308
+L GPPG GKT A A+A E F N +L E +R+ +E +
Sbjct: 49 LLFAGPPGVGKTTAALALARE----LFGENWRHNFLELNASDERGINVIREKVKEFARTK 104
Query: 309 P------SIIFIDELDSI 320
P IIF+DE D++
Sbjct: 105 PIGGASFKIIFLDEADAL 122
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 18/146 (12%)
Query: 528 YGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA----RQSAPC 583
+G G GK+ + + + N I + EL + GE +R+ + +A R+ C
Sbjct: 42 WGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMC 101
Query: 584 VLFFDELDSIATQRGSSTXXXXXXXXRVLNQLL---------TEMDGMNAKKT---VFII 631
LF ++LD+ A + G +T +++N L ++ GM K+ V II
Sbjct: 102 CLFINDLDAGAGRMGGTT--QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPII 159
Query: 632 GATNRPDIIDPALLRPGRLDQLIYIP 657
N + L+R GR+++ + P
Sbjct: 160 VTGNDFSTLYAPLIRDGRMEKFYWAP 185
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 9/121 (7%)
Query: 246 VKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA- 304
+K P + ++G G GK+ V + G +++ E+ S AGE +R+ + EA
Sbjct: 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 92
Query: 305 ---EKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLL--TLMDGLKSRAHVIVMGATN 359
K +FI++LD+ A + G + + +Q++ TLM+ + +V + G N
Sbjct: 93 EIIRKGNMCCLFINDLDAGA---GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 149
Query: 360 R 360
+
Sbjct: 150 K 150
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 70/179 (39%), Gaps = 35/179 (19%)
Query: 525 VLFYGPPGCGKTLLAKAIANE-----CQANFISVKGPELLTMWFGESEANVREIFDKARQ 579
+LF GPPG GKT A A+A + + NFI + + + VR + +
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI------DVVRHKIKEFAR 94
Query: 580 SAPC------VLFFDELDSIATQRGSSTXXXXXXXXRVLNQLLTEMDGMNAKKTVFIIGA 633
+AP ++F DE D++ T R + M +K FI+
Sbjct: 95 TAPIGGAPFKIIFLDEADAL-------TADAQAALRRTME--------MYSKSCRFILSC 139
Query: 634 TNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHG 692
II+P R + P+P EA + ++ + C ++ + L AL + G
Sbjct: 140 NYVSRIIEPI---QSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG 195
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 252 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNL---RKAFEEAEKNA 308
+L GPPG+GKT A A+A + F N + ++ E + R +E + A
Sbjct: 41 LLFSGPPGTGKTATAIALARD----LFGENWRDNFIEMNASDERGIDVVRHKIKEFARTA 96
Query: 309 P------SIIFIDELDSI 320
P IIF+DE D++
Sbjct: 97 PIGGAPFKIIFLDEADAL 114
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 518 GMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLTMWFGESEANV----R 571
G + VL G PG GKT +A +A + F ++ G E+ ++ ++EA R
Sbjct: 66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRR 125
Query: 572 EIFDKARQSAPCVLFFDELDSI 593
I + + A + E+D I
Sbjct: 126 SIGVRIKAGAVHTVSLHEIDVI 147
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 250 KGILLYGPPGSGKTLIARAVANETG--AFFFLINGPEIMSKLAGESESNLRKAFEEA--- 304
+ +L+ G PG+GKT IA +A G F I G EI S ++E+ L +AF +
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEA-LTQAFRRSIGV 129
Query: 305 --EKNAPSIIFIDELDSIAPKRE 325
+ A + + E+D I + +
Sbjct: 130 RIKAGAVHTVSLHEIDVINSRTQ 152
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 250 KGILLYGPPGSGKTLIARAVANETG--AFFFLINGPEIMSKLAGESESNLRKAFEEA--- 304
+ +L+ G PG+GKT IA A G F I G EI S ++E+ L +AF +
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEA-LTQAFRRSIGV 144
Query: 305 --EKNAPSIIFIDELDSIAPKREKTHG 329
++ P ++ L I +T G
Sbjct: 145 RIKEGPPGVVHTVSLHEIDVINSRTQG 171
>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144
From Janibacter Sp. Htcc2649), Unliganded Structure
Length = 200
Score = 32.7 bits (73), Expect = 0.85, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 247 KPPKGILLYGPPGSGKTLIARAVANETGAFF 277
+P + +++ G GSGKT IA VA+ETG F
Sbjct: 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEF 57
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 245 GVKPPKGI--LLYGPPGSGKTLIARAVANETGAFFFL 279
++ PKGI L+ G PG+GKT +A +A E F L
Sbjct: 4 SMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHL 40
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 67/159 (42%), Gaps = 18/159 (11%)
Query: 527 FYGPPGCGKTLLAKAIANECQANF--ISVKG----PELLT---MWFGESEANVREIFDKA 577
GPPG GKT LAK+IA F IS+ G E+ + G + + KA
Sbjct: 113 LAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKA 172
Query: 578 RQSAPCVLFFDELDSIATQ-RGSSTXXXXXXXXRVLNQLLTEM---DGMNAKKTVFIIGA 633
+ P V DE+D +++ RG + N ++ + + K +FI A
Sbjct: 173 GKLNP-VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATA 231
Query: 634 TNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACL 672
N I P LR R+ ++I I E +L+I K L
Sbjct: 232 NNLATI--PGPLRD-RM-EIINIAGYTEIEKLEIVKDHL 266
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 252 ILLYGPPGSGKTLIARAVANETGAFFFLIN 281
+ L GPPG GKT +A+++A G F I+
Sbjct: 111 LCLAGPPGVGKTSLAKSIAKSLGRKFVRIS 140
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 39/146 (26%)
Query: 252 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM-SKLAGESESNLR---------KAF 301
+L YGPPG+GKT A+ E + GP++M S++ + S+ R K F
Sbjct: 61 MLFYGPPGTGKTSTILALTKE-------LYGPDLMKSRILELNASDERGISIVREKVKNF 113
Query: 302 EEAEKNAPS-------------IIFIDELDSIAPKRE-------KTHGEVER--RIVSQL 339
+ PS II +DE DS+ + +T+ V R I + +
Sbjct: 114 ARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYV 173
Query: 340 LTLMDGLKSRAHVIVMGATNRPNSID 365
++D L S+ A + N+ID
Sbjct: 174 TRIIDPLASQCSKFRFKALDASNAID 199
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 7/35 (20%)
Query: 525 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 559
+LFYGPPG GKT A+ E + GP+L+
Sbjct: 61 MLFYGPPGTGKTSTILALTKE-------LYGPDLM 88
>pdb|3LHR|A Chain A, Crystal Structure Of The Scan Domain From Human Znf24
pdb|3LHR|B Chain B, Crystal Structure Of The Scan Domain From Human Znf24
Length = 93
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 10/48 (20%)
Query: 189 APDTEIFCEGEPVKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLR 236
+PD EIF +R + GY D G R+ ++Q+REL L LR
Sbjct: 2 SPDPEIF----------RQRFRQFGYQDSPGPREAVSQLRELCRLWLR 39
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 57/137 (41%), Gaps = 25/137 (18%)
Query: 253 LLYGPPGSGKTLIARAVANET--GAFFFLINGPEIMS----------KLAGESESNLRKA 300
+L G PG GKT I +A G + G I+S K GE E L+
Sbjct: 195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 254
Query: 301 FEE-AEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATN 359
+E + I+FIDEL ++ K G V+ ++ +R + ++GAT
Sbjct: 255 IQEVVQSQGEVILFIDELHTVVGA-GKAEGAVDAG------NMLKPALARGELRLIGATT 307
Query: 360 ----RPNSIDPAL-RRF 371
R DPAL RRF
Sbjct: 308 LDEYREIEKDPALERRF 324
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 74/190 (38%), Gaps = 35/190 (18%)
Query: 526 LFYGPPGCGKTLLAKAIANECQANFI--SVKGPELLTM----------WFGESEANVREI 573
+ G PG GKT + + +A + +KG ++++ + GE E ++ +
Sbjct: 195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 254
Query: 574 FDKARQS-APCVLFFDELDSIATQRGSSTXXXXXXXXRVLNQLLTEMDGMNAKKTVFIIG 632
+ QS +LF DEL ++ G+ +L L A+ + +IG
Sbjct: 255 IQEVVQSQGEVILFIDELHTVV---GAGKAEGAVDAGNMLKPAL-------ARGELRLIG 304
Query: 633 ATN----RPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLS---- 684
AT R DPAL R Q +Y+ P + I + K + V +S
Sbjct: 305 ATTLDEYREIEKDPAL---ERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAI 361
Query: 685 -ALARYTHGF 693
A A +H +
Sbjct: 362 IAAATLSHRY 371
>pdb|2DZN|B Chain B, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|D Chain D, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|F Chain F, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|B Chain B, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|D Chain D, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 82
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 664 RLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIREN----IEKDIE 719
R IF K ++P+ DL +L SGA I + Q A A+R+N ++ D+E
Sbjct: 3 RRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLE 62
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 245 GVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLING 282
V+ P LL G PGSGKT + A+ ET +I+
Sbjct: 29 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66
>pdb|3B3X|A Chain A, Crystal Structure Of Class A Beta-Lactamase Of Bacillus
Licheniformis Bs3 With Aminocitrate
pdb|3B3X|B Chain B, Crystal Structure Of Class A Beta-Lactamase Of Bacillus
Licheniformis Bs3 With Aminocitrate
pdb|2WK0|A Chain A, Crystal Structure Of The Class A Beta-Lactamase Bs3
Inhibited By 6-Beta-Iodopenicillanate.
pdb|2WK0|B Chain B, Crystal Structure Of The Class A Beta-Lactamase Bs3
Inhibited By 6-Beta-Iodopenicillanate.
pdb|2X71|A Chain A, Structural Basis For The Interaction Of Lactivicins With
Serine Beta-Lactamases
pdb|2X71|B Chain B, Structural Basis For The Interaction Of Lactivicins With
Serine Beta-Lactamases
pdb|4A5R|A Chain A, Crystal Structure Of Class A Beta-Lactamase From Bacillus
Licheniformis Bs3 With Tazobactam
pdb|4A5R|B Chain B, Crystal Structure Of Class A Beta-Lactamase From Bacillus
Licheniformis Bs3 With Tazobactam
Length = 265
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 14/119 (11%)
Query: 451 EVLNSMAVTNEHFQTALGTSN--PSALRETVVEVPNVSWEDIGGLDNVKRELQETVQYPV 508
+++N +T +H T + ++LR + N+ + IGG +++K+EL++ + V
Sbjct: 73 DLVNYNPITEKHVDTGMTLKELADASLRYSDNTAQNLILKQIGGPESLKKELRK-IGDEV 131
Query: 509 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP----ELLTMWF 563
+PE+FE P + P T A+A+A QA + K P ELL W
Sbjct: 132 TNPERFE-----PELNEV--NPGETQDTSTARALATSLQAFALEDKLPSEKRELLIDWM 183
>pdb|1ZP6|A Chain A, Crystal Structure Of Atu3015, A Putative Cytidylate Kinase
From Agrobacterium Tumefaciens, Northeast Structural
Genomics Target Atr62
Length = 191
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 252 ILLYGPPGSGKTLIARAVANETG 274
+LL G PGSGK+ IA A+AN G
Sbjct: 12 LLLSGHPGSGKSTIAEALANLPG 34
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 252 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN--AP 309
++ GPPG+GK A+ +A E G F I+ +I+ + + +KA E E+ P
Sbjct: 3 LVFLGPPGAGKGTQAKRLAKEKG--FVHISTGDILREAVQKGTPLGKKAKEYMERGELVP 60
Query: 310 SIIFIDELDSIAPKREKTHGEV 331
+ I ++ + PK HG V
Sbjct: 61 DDLIIALIEEVFPK----HGNV 78
>pdb|2Y91|A Chain A, Crystal Structure Of Class A Beta-Lactamase From Bacillus
Licheniformis Bs3 With Clavulanic Acid
pdb|2Y91|B Chain B, Crystal Structure Of Class A Beta-Lactamase From Bacillus
Licheniformis Bs3 With Clavulanic Acid
Length = 265
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 14/119 (11%)
Query: 451 EVLNSMAVTNEHFQTALGTSN--PSALRETVVEVPNVSWEDIGGLDNVKRELQETVQYPV 508
+++N +T +H T + ++LR + N+ + IGG +++K+EL++ + V
Sbjct: 73 DLVNYNPITEKHVDTGMTLKELADASLRYSDNTAQNLILKQIGGPESLKKELRK-IGDEV 131
Query: 509 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP----ELLTMWF 563
+PE+FE P + P T A+A+A QA + K P ELL W
Sbjct: 132 TNPERFE-----PELNEV--NPGETQDTSTARALATSLQAFALEDKLPSEKRELLIDWM 183
>pdb|3H0G|B Chain B, Rna Polymerase Ii From Schizosaccharomyces Pombe
pdb|3H0G|N Chain N, Rna Polymerase Ii From Schizosaccharomyces Pombe
Length = 1210
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 14/147 (9%)
Query: 544 NEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSS 600
NEC Q + + G E + + S AN+ ++F KA S + + E+ S A +RGS
Sbjct: 178 NECPYDQGGYFIINGSEKVIIAQERSAANIVQVFKKAAPSP--IAYVAEIRS-ALERGSR 234
Query: 601 TXXXXXXXXRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPAL-LRPGR--LDQLIYIP 657
N TE G + T+ I + I+ AL + P R L+ + Y
Sbjct: 235 LISSMQIKLMARN---TENSGQTIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYD- 290
Query: 658 LPDEASRLQIFKACLRKSPISPDVDLS 684
P++ L++ K C+ ++ + D D++
Sbjct: 291 -PNDFQMLEMMKPCIEEAFVIQDKDIA 316
>pdb|1I2S|A Chain A, Beta-Lactamase From Bacillus Licheniformis Bs3
pdb|1I2S|B Chain B, Beta-Lactamase From Bacillus Licheniformis Bs3
pdb|1I2W|A Chain A, Beta-Lactamase From Bacillus Licheniformis Bs3 Complexed
With Cefoxitin
pdb|1I2W|B Chain B, Beta-Lactamase From Bacillus Licheniformis Bs3 Complexed
With Cefoxitin
Length = 282
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 14/119 (11%)
Query: 451 EVLNSMAVTNEHFQTALGTSN--PSALRETVVEVPNVSWEDIGGLDNVKRELQETVQYPV 508
+++N +T +H T + ++LR + N+ + IGG +++K+EL++ + V
Sbjct: 90 DLVNYNPITEKHVDTGMTLKELADASLRYSDNTAQNLILKQIGGPESLKKELRK-IGDEV 148
Query: 509 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP----ELLTMWF 563
+PE+FE P + P T A+A+A QA + K P ELL W
Sbjct: 149 TNPERFE-----PELNEV--NPGETQDTSTARALATSLQAFALEDKLPSEKRELLIDWM 200
>pdb|3FAJ|A Chain A, Structure Of The Structural Protein P131 Of The Archaeal
Virus Acidianus Two-Tailed Virus (Atv)
Length = 151
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 283 PEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHG 329
PE+ KLAGE E+N R+A +E K A I D++ P R K G
Sbjct: 50 PEVTLKLAGE-EANARRAGDERTKEAIHAIVKMISDAMKPYRNKGSG 95
>pdb|2OQ4|A Chain A, Crystal Structure Of The Dna Repair Enzyme Endonuclease-
Viii (Nei) From E. Coli (E2q) In Complex With Ap-Site
Containing Dna Substrate
pdb|2OQ4|B Chain B, Crystal Structure Of The Dna Repair Enzyme Endonuclease-
Viii (Nei) From E. Coli (E2q) In Complex With Ap-Site
Containing Dna Substrate
Length = 262
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 448 IDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLDNVKRELQETVQYP 507
+ E+L + +T H L + AL ++E+P S+ G +D K ++
Sbjct: 170 LRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDENKHH-GALFRFK 228
Query: 508 VEH--PEKFEKFGMSPSKGVL----FYGPPGC 533
V H E E+ G K L FY PGC
Sbjct: 229 VFHRDGEPCERCGSIIEKTTLSSRPFYWCPGC 260
>pdb|1K3W|A Chain A, Crystal Structure Of A Trapped Reaction Intermediate Of
The Dna Repair Enzyme Endonuclease Viii With Dna
pdb|1K3X|A Chain A, Crystal Structure Of A Trapped Reaction Intermediate Of
The Dna Repair Enzyme Endonuclease Viii With
Brominated-Dna
pdb|1Q39|A Chain A, Crystal Structure Of The Dna Repair Enzyme
Endonuclease-Viii (Nei) From E. Coli: The Wt Enzyme At
2.8 Resolution.
pdb|2EA0|A Chain A, Crystal Structure Of The Dna Repair Enzyme
Endonuclease-viii (nei) From E. Coli In Complex With
Ap-site Containing Dna Substrate
Length = 262
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 448 IDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLDNVKRELQETVQYP 507
+ E+L + +T H L + AL ++E+P S+ G +D K ++
Sbjct: 170 LRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDENKHH-GALFRFK 228
Query: 508 VEH--PEKFEKFGMSPSKGVL----FYGPPGC 533
V H E E+ G K L FY PGC
Sbjct: 229 VFHRDGEPCERCGSIIEKTTLSSRPFYWCPGC 260
>pdb|1Q3C|A Chain A, Crystal Structure Of The Dna Repair Enzyme
Endonuclease-Viii (Nei) From E. Coli: The E2a Mutant At
2.3 Resolution
Length = 262
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 448 IDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLDNVKRELQETVQYP 507
+ E+L + +T H L + AL ++E+P S+ G +D K ++
Sbjct: 170 LRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDENKHH-GALFRFK 228
Query: 508 VEH--PEKFEKFGMSPSKGVL----FYGPPGC 533
V H E E+ G K L FY PGC
Sbjct: 229 VFHRDGEPCERCGSIIEKTTLSSRPFYWCPGC 260
>pdb|1Q3B|A Chain A, Crystal Structure Of The Dna Repair Enzyme
Endonuclease-Viii (Nei) From E. Coli: The R252a Mutant
At 2.05 Resolution.
pdb|2OPF|A Chain A, Crystal Structure Of The Dna Repair Enzyme
Endonuclease-Viii (Nei) From E. Coli (R252a) In Complex
With Ap-Site Containing Dna Substrate
Length = 262
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 448 IDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLDNVKRELQETVQYP 507
+ E+L + +T H L + AL ++E+P S+ G +D K ++
Sbjct: 170 LRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDENKHH-GALFRFK 228
Query: 508 VEH--PEKFEKFGMSPSKGVL----FYGPPGC 533
V H E E+ G K L FY PGC
Sbjct: 229 VFHRDGEPCERCGSIIEKTTLSSAPFYWCPGC 260
>pdb|3MHV|C Chain C, Crystal Structure Of Vps4 And Vta1
Length = 117
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 659 PDEASRLQIFKACLRKSP-ISPDVDLSALARYTHGFSGADITEVCQRACKYAIRE 712
PD A+R +F+ + +P + D L T G+SG+DI V + A IR+
Sbjct: 3 PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 57
>pdb|1W7F|A Chain A, Crystal Structure Of The Class A Beta-Lactamase Bs3
Inhibited With Isocitrate
pdb|1W7F|B Chain B, Crystal Structure Of The Class A Beta-Lactamase Bs3
Inhibited With Isocitrate
Length = 307
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 14/119 (11%)
Query: 451 EVLNSMAVTNEHFQTALGTSN--PSALRETVVEVPNVSWEDIGGLDNVKRELQETVQYPV 508
+++N +T +H T + ++LR + N+ + IGG +++K+EL++ + V
Sbjct: 115 DLVNYNPITEKHVDTGMTLKELADASLRYSDNTAQNLILKQIGGPESLKKELRK-IGDEV 173
Query: 509 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP----ELLTMWF 563
+PE+FE P + P T A+A+A QA + K P ELL W
Sbjct: 174 TNPERFE-----PELNEV--NPGETQDTSTARALATSLQAFALEDKLPSEKRELLIDWM 225
>pdb|2W58|A Chain A, Crystal Structure Of The Dnai
pdb|2W58|B Chain B, Crystal Structure Of The Dnai
Length = 202
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 247 KPPKGILLYGPPGSGKTLIARAVANE 272
K KG+ L+G G GKT + A+ANE
Sbjct: 52 KKMKGLYLHGSFGVGKTYLLAAIANE 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,947,400
Number of Sequences: 62578
Number of extensions: 919755
Number of successful extensions: 3242
Number of sequences better than 100.0: 126
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 2916
Number of HSP's gapped (non-prelim): 247
length of query: 813
length of database: 14,973,337
effective HSP length: 107
effective length of query: 706
effective length of database: 8,277,491
effective search space: 5843908646
effective search space used: 5843908646
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)