Query 003525
Match_columns 813
No_of_seqs 677 out of 5169
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 01:05:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003525.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003525hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0730 AAA+-type ATPase [Post 100.0 9E-119 2E-123 983.1 49.9 690 22-772 2-692 (693)
2 KOG0733 Nuclear AAA ATPase (VC 100.0 5E-113 1E-117 920.8 48.0 556 210-779 185-794 (802)
3 TIGR01243 CDC48 AAA family ATP 100.0 1.3E-98 3E-103 899.6 71.6 722 37-775 3-731 (733)
4 KOG0736 Peroxisome assembly fa 100.0 2.2E-84 4.8E-89 715.7 51.8 614 140-774 303-952 (953)
5 KOG0735 AAA+-type ATPase [Post 100.0 4.1E-72 9E-77 612.5 40.3 499 247-777 429-939 (952)
6 COG0464 SpoVK ATPases of the A 100.0 3.1E-66 6.6E-71 596.7 42.1 489 233-769 2-492 (494)
7 KOG0741 AAA+-type ATPase [Post 100.0 4.6E-58 1E-62 487.7 37.6 601 38-669 11-683 (744)
8 COG1222 RPT1 ATP-dependent 26S 100.0 3.7E-59 8E-64 480.0 23.8 253 479-756 142-394 (406)
9 KOG0738 AAA+-type ATPase [Post 100.0 3.2E-54 6.8E-59 445.1 21.1 285 478-775 202-490 (491)
10 COG1222 RPT1 ATP-dependent 26S 100.0 3.8E-49 8.3E-54 406.1 25.9 247 207-470 143-392 (406)
11 KOG0727 26S proteasome regulat 100.0 1.1E-48 2.4E-53 381.9 19.6 249 481-754 148-396 (408)
12 KOG0739 AAA+-type ATPase [Post 100.0 4.4E-49 9.5E-54 393.3 16.2 293 478-776 123-438 (439)
13 KOG0728 26S proteasome regulat 100.0 1.2E-47 2.6E-52 374.3 19.7 254 481-759 140-393 (404)
14 KOG0734 AAA+-type ATPase conta 100.0 2.5E-47 5.5E-52 406.2 17.2 244 482-754 298-541 (752)
15 CHL00195 ycf46 Ycf46; Provisio 100.0 7.1E-45 1.5E-49 408.7 37.9 399 308-773 81-484 (489)
16 KOG0733 Nuclear AAA ATPase (VC 100.0 1E-45 2.2E-50 400.1 23.1 271 203-474 499-773 (802)
17 KOG0726 26S proteasome regulat 100.0 1.5E-46 3.2E-51 374.0 14.3 249 481-754 178-426 (440)
18 KOG0652 26S proteasome regulat 100.0 4.5E-46 9.7E-51 365.2 16.7 251 481-756 164-414 (424)
19 KOG0730 AAA+-type ATPase [Post 100.0 3.4E-45 7.4E-50 402.9 22.6 251 208-473 427-677 (693)
20 KOG0729 26S proteasome regulat 100.0 2.2E-45 4.9E-50 361.3 16.8 259 471-754 160-418 (435)
21 KOG0731 AAA+-type ATPase conta 100.0 9.3E-44 2E-48 403.9 20.2 250 482-757 305-556 (774)
22 PTZ00454 26S protease regulato 100.0 2.3E-43 5E-48 389.0 22.2 254 480-758 137-390 (398)
23 KOG0737 AAA+-type ATPase [Post 100.0 2E-43 4.3E-48 366.6 19.6 288 483-775 87-382 (386)
24 KOG0736 Peroxisome assembly fa 100.0 6E-42 1.3E-46 379.6 22.3 269 207-476 664-938 (953)
25 COG0465 HflB ATP-dependent Zn 100.0 1.8E-42 4E-47 388.1 18.3 247 482-754 144-390 (596)
26 KOG0741 AAA+-type ATPase [Post 100.0 1E-42 2.2E-47 370.9 13.9 300 480-790 211-537 (744)
27 COG1223 Predicted ATPase (AAA+ 100.0 7.9E-42 1.7E-46 335.8 15.9 244 481-757 114-358 (368)
28 PRK03992 proteasome-activating 100.0 2.7E-41 5.8E-46 375.1 22.1 258 479-761 122-379 (389)
29 PTZ00361 26 proteosome regulat 100.0 9.5E-41 2.1E-45 369.9 20.2 250 481-755 176-425 (438)
30 KOG0740 AAA+-type ATPase [Post 100.0 1.5E-40 3.3E-45 358.4 15.5 279 479-776 144-426 (428)
31 COG1223 Predicted ATPase (AAA+ 100.0 2.3E-38 4.9E-43 311.4 25.7 303 140-470 50-355 (368)
32 KOG0727 26S proteasome regulat 100.0 1.2E-38 2.7E-43 311.6 20.1 247 207-470 147-396 (408)
33 KOG0726 26S proteasome regulat 100.0 2.2E-39 4.7E-44 322.9 14.4 246 208-470 178-426 (440)
34 KOG0728 26S proteasome regulat 100.0 1.3E-38 2.9E-43 311.0 19.4 246 207-470 139-388 (404)
35 KOG0651 26S proteasome regulat 100.0 1.3E-39 2.9E-44 328.2 12.6 248 483-755 127-374 (388)
36 KOG0652 26S proteasome regulat 100.0 2.8E-38 6E-43 310.4 21.5 257 181-438 131-397 (424)
37 KOG0738 AAA+-type ATPase [Post 100.0 3E-38 6.6E-43 326.8 21.4 263 209-475 206-474 (491)
38 TIGR01241 FtsH_fam ATP-depende 100.0 2.2E-38 4.7E-43 364.0 22.5 249 481-755 48-296 (495)
39 KOG0732 AAA+-type ATPase conta 100.0 2.6E-38 5.7E-43 367.8 22.3 445 210-673 260-727 (1080)
40 TIGR03689 pup_AAA proteasome A 100.0 5.9E-38 1.3E-42 351.7 21.2 251 480-753 174-477 (512)
41 KOG0734 AAA+-type ATPase conta 100.0 7E-38 1.5E-42 334.3 20.3 228 208-436 297-524 (752)
42 TIGR01242 26Sp45 26S proteasom 100.0 1.4E-37 3E-42 344.4 21.8 250 480-754 114-363 (364)
43 KOG0729 26S proteasome regulat 100.0 2.4E-37 5.2E-42 304.7 16.8 230 207-437 169-402 (435)
44 KOG0735 AAA+-type ATPase [Post 100.0 9.5E-37 2.1E-41 335.2 22.8 228 211-438 663-890 (952)
45 CHL00176 ftsH cell division pr 100.0 6.5E-37 1.4E-41 354.7 21.8 247 482-754 177-423 (638)
46 PTZ00454 26S protease regulato 100.0 5.5E-35 1.2E-39 322.5 24.4 246 208-470 138-386 (398)
47 PRK10733 hflB ATP-dependent me 100.0 2.1E-35 4.5E-40 346.7 21.5 248 483-756 147-394 (644)
48 CHL00206 ycf2 Ycf2; Provisiona 100.0 4.5E-35 9.8E-40 352.9 21.7 212 509-754 1617-1877(2281)
49 KOG0732 AAA+-type ATPase conta 100.0 7.4E-36 1.6E-40 347.5 14.3 266 482-759 259-530 (1080)
50 KOG0737 AAA+-type ATPase [Post 100.0 6.5E-35 1.4E-39 303.2 18.9 229 210-440 87-318 (386)
51 KOG0731 AAA+-type ATPase conta 100.0 2.3E-34 5E-39 327.5 21.6 228 210-438 306-538 (774)
52 KOG0739 AAA+-type ATPase [Post 100.0 1E-34 2.2E-39 290.5 15.6 228 208-438 126-355 (439)
53 TIGR01243 CDC48 AAA family ATP 100.0 1.6E-33 3.4E-38 338.2 25.2 267 209-475 447-715 (733)
54 PTZ00361 26 proteosome regulat 100.0 2.2E-33 4.8E-38 311.2 22.4 246 208-470 176-424 (438)
55 PLN00020 ribulose bisphosphate 100.0 9.8E-34 2.1E-38 297.6 18.4 219 486-712 113-354 (413)
56 PRK03992 proteasome-activating 100.0 3.6E-33 7.7E-38 310.1 23.8 250 208-474 124-376 (389)
57 COG0464 SpoVK ATPases of the A 100.0 6.3E-33 1.4E-37 320.0 24.5 249 209-473 236-486 (494)
58 TIGR02639 ClpA ATP-dependent C 100.0 6.5E-32 1.4E-36 323.0 31.6 443 210-713 177-715 (731)
59 PRK11034 clpA ATP-dependent Cl 100.0 3.6E-31 7.9E-36 311.8 31.5 446 213-713 184-719 (758)
60 COG0465 HflB ATP-dependent Zn 100.0 2.2E-32 4.8E-37 307.0 19.2 229 209-438 144-375 (596)
61 TIGR01242 26Sp45 26S proteasom 100.0 2E-30 4.3E-35 287.3 26.9 245 208-469 115-362 (364)
62 CHL00195 ycf46 Ycf46; Provisio 100.0 1.3E-30 2.9E-35 293.4 24.5 242 210-474 223-467 (489)
63 TIGR01241 FtsH_fam ATP-depende 100.0 2.1E-30 4.5E-35 298.0 22.7 244 209-470 49-295 (495)
64 KOG0651 26S proteasome regulat 100.0 2.2E-31 4.8E-36 268.9 12.7 230 207-436 124-356 (388)
65 TIGR03689 pup_AAA proteasome A 100.0 5.3E-30 1.2E-34 287.6 22.3 222 207-434 174-411 (512)
66 CHL00176 ftsH cell division pr 100.0 2.8E-29 6.1E-34 291.2 21.8 243 210-470 178-423 (638)
67 TIGR03345 VI_ClpV1 type VI sec 100.0 3.7E-27 8.1E-32 283.4 32.7 454 210-713 182-834 (852)
68 KOG0740 AAA+-type ATPase [Post 100.0 1.5E-28 3.2E-33 265.7 17.0 260 208-474 146-408 (428)
69 CHL00095 clpC Clp protease ATP 100.0 3.9E-27 8.5E-32 285.0 30.2 453 212-713 176-785 (821)
70 PRK10733 hflB ATP-dependent me 100.0 1.8E-27 3.9E-32 279.7 23.0 242 211-470 148-392 (644)
71 PLN00020 ribulose bisphosphate 100.0 2.3E-27 4.9E-32 249.7 20.9 215 212-431 112-349 (413)
72 TIGR03346 chaperone_ClpB ATP-d 100.0 5.3E-26 1.2E-30 275.8 33.9 456 210-714 168-830 (852)
73 PRK10865 protein disaggregatio 100.0 4.7E-26 1E-30 274.9 32.7 455 210-713 173-832 (857)
74 CHL00206 ycf2 Ycf2; Provisiona 99.9 2.7E-27 5.8E-32 286.3 20.0 201 233-439 1614-1863(2281)
75 COG0542 clpA ATP-binding subun 99.9 7.1E-26 1.5E-30 260.6 29.4 454 211-712 166-757 (786)
76 KOG0744 AAA+-type ATPase [Post 99.9 3.5E-23 7.6E-28 210.5 10.2 239 486-753 140-413 (423)
77 CHL00181 cbbX CbbX; Provisiona 99.9 4.3E-22 9.3E-27 211.8 15.6 215 487-715 22-260 (287)
78 KOG0743 AAA+-type ATPase [Post 99.9 3.6E-22 7.8E-27 214.2 13.7 220 485-713 198-427 (457)
79 TIGR02881 spore_V_K stage V sp 99.9 2.1E-21 4.6E-26 205.3 15.2 214 487-714 5-243 (261)
80 PF00004 AAA: ATPase family as 99.9 1.8E-21 3.8E-26 183.6 12.4 130 525-658 1-132 (132)
81 TIGR02880 cbbX_cfxQ probable R 99.9 1.7E-21 3.6E-26 207.6 13.5 212 489-713 23-257 (284)
82 KOG0742 AAA+-type ATPase [Post 99.8 7.9E-21 1.7E-25 198.3 14.9 181 520-707 382-590 (630)
83 PF00004 AAA: ATPase family as 99.8 1.6E-18 3.5E-23 163.3 15.2 129 252-381 1-131 (132)
84 CHL00181 cbbX CbbX; Provisiona 99.7 3E-17 6.6E-22 174.7 18.5 214 214-437 22-258 (287)
85 TIGR02880 cbbX_cfxQ probable R 99.7 4E-17 8.6E-22 174.0 17.9 211 216-436 23-256 (284)
86 PF05496 RuvB_N: Holliday junc 99.7 1.1E-17 2.4E-22 166.3 12.6 189 484-705 20-225 (233)
87 TIGR02881 spore_V_K stage V sp 99.7 1.4E-16 3.1E-21 168.4 18.8 176 214-400 5-195 (261)
88 TIGR00763 lon ATP-dependent pr 99.7 2.6E-17 5.7E-22 198.6 14.7 204 488-712 320-557 (775)
89 TIGR02639 ClpA ATP-dependent C 99.7 5E-17 1.1E-21 195.1 16.3 250 485-781 179-459 (731)
90 COG2256 MGS1 ATPase related to 99.7 1.7E-16 3.6E-21 167.9 17.3 227 483-778 19-262 (436)
91 PRK00080 ruvB Holliday junctio 99.7 9.1E-16 2E-20 167.9 20.3 234 484-775 21-274 (328)
92 KOG0744 AAA+-type ATPase [Post 99.7 1.2E-16 2.5E-21 163.4 10.0 148 247-396 175-340 (423)
93 TIGR00635 ruvB Holliday juncti 99.7 1.9E-15 4.1E-20 164.1 19.8 211 486-754 2-229 (305)
94 PRK11034 clpA ATP-dependent Cl 99.7 5.4E-16 1.2E-20 183.7 16.2 176 521-708 206-408 (758)
95 COG2255 RuvB Holliday junction 99.7 2.1E-15 4.5E-20 152.5 17.1 233 484-774 22-274 (332)
96 KOG0743 AAA+-type ATPase [Post 99.7 1E-15 2.2E-20 164.8 15.8 179 212-398 198-385 (457)
97 COG0466 Lon ATP-dependent Lon 99.7 8.4E-16 1.8E-20 172.7 15.6 206 488-723 323-555 (782)
98 KOG2004 Mitochondrial ATP-depe 99.7 8.9E-16 1.9E-20 171.1 14.1 207 487-723 410-643 (906)
99 PF05496 RuvB_N: Holliday junc 99.6 4.7E-15 1E-19 147.8 17.4 183 207-418 16-215 (233)
100 KOG0742 AAA+-type ATPase [Post 99.6 2.6E-15 5.6E-20 157.4 16.1 176 248-428 383-587 (630)
101 KOG1051 Chaperone HSP104 and r 99.6 9.6E-14 2.1E-18 163.0 26.5 159 217-398 189-365 (898)
102 PRK05342 clpX ATP-dependent pr 99.6 7.2E-15 1.6E-19 163.2 16.2 223 489-713 72-382 (412)
103 PRK00149 dnaA chromosomal repl 99.6 3.2E-14 7E-19 162.2 16.2 174 523-712 149-333 (450)
104 PRK07003 DNA polymerase III su 99.6 7.4E-14 1.6E-18 160.5 18.8 187 484-708 12-227 (830)
105 PRK12323 DNA polymerase III su 99.6 4.4E-14 9.4E-19 160.6 16.4 186 484-707 12-231 (700)
106 TIGR00382 clpX endopeptidase C 99.6 3.1E-14 6.6E-19 157.2 14.8 224 488-713 77-388 (413)
107 TIGR00362 DnaA chromosomal rep 99.6 4.4E-14 9.6E-19 159.2 16.4 173 522-711 136-320 (405)
108 PRK13342 recombination factor 99.6 8.2E-14 1.8E-18 157.0 18.5 179 485-706 9-201 (413)
109 PRK10787 DNA-binding ATP-depen 99.6 4.5E-14 9.8E-19 168.8 16.7 204 488-713 322-559 (784)
110 TIGR00763 lon ATP-dependent pr 99.5 1E-13 2.2E-18 167.6 19.1 164 215-396 320-505 (775)
111 PRK10865 protein disaggregatio 99.5 2.5E-14 5.3E-19 173.6 13.2 167 485-677 175-359 (857)
112 TIGR03345 VI_ClpV1 type VI sec 99.5 2.6E-14 5.7E-19 172.8 13.1 185 484-694 183-390 (852)
113 CHL00095 clpC Clp protease ATP 99.5 1.5E-13 3.2E-18 167.2 19.1 185 485-695 176-382 (821)
114 COG2255 RuvB Holliday junction 99.5 2.2E-13 4.8E-18 138.0 16.7 182 208-418 19-217 (332)
115 PRK14962 DNA polymerase III su 99.5 1.5E-13 3.3E-18 155.5 17.5 183 484-704 10-221 (472)
116 TIGR02902 spore_lonB ATP-depen 99.5 8.9E-14 1.9E-18 160.6 15.7 210 484-753 61-331 (531)
117 PRK07940 DNA polymerase III su 99.5 6.6E-14 1.4E-18 154.9 13.6 186 486-702 3-215 (394)
118 TIGR00390 hslU ATP-dependent p 99.5 9.1E-14 2E-18 150.9 14.1 176 489-668 13-342 (441)
119 PRK14956 DNA polymerase III su 99.5 1.2E-13 2.6E-18 153.7 15.2 184 484-705 14-226 (484)
120 PRK00080 ruvB Holliday junctio 99.5 6E-13 1.3E-17 145.7 20.6 192 208-429 18-226 (328)
121 PRK12422 chromosomal replicati 99.5 2E-13 4.4E-18 153.8 16.8 169 522-706 141-318 (445)
122 PRK14088 dnaA chromosomal repl 99.5 1.6E-13 3.6E-18 154.9 15.9 174 523-712 131-316 (440)
123 PRK05201 hslU ATP-dependent pr 99.5 7.7E-14 1.7E-18 151.6 12.6 177 489-669 16-345 (443)
124 COG2256 MGS1 ATPase related to 99.5 3E-13 6.5E-18 143.4 16.3 176 207-420 16-208 (436)
125 PRK14086 dnaA chromosomal repl 99.5 2.8E-13 6E-18 154.7 17.0 174 523-712 315-499 (617)
126 TIGR00635 ruvB Holliday juncti 99.5 9.1E-13 2E-17 143.0 19.9 187 213-429 2-205 (305)
127 PRK14960 DNA polymerase III su 99.5 4.4E-13 9.5E-18 152.9 17.9 186 484-707 11-225 (702)
128 PRK14949 DNA polymerase III su 99.5 6.2E-13 1.3E-17 155.9 19.1 185 484-706 12-225 (944)
129 PRK14961 DNA polymerase III su 99.5 4.6E-13 1E-17 148.3 16.9 186 484-707 12-226 (363)
130 KOG2028 ATPase related to the 99.5 4.5E-13 9.9E-18 139.0 15.4 207 523-779 163-393 (554)
131 TIGR03346 chaperone_ClpB ATP-d 99.5 1.3E-13 2.7E-18 168.2 13.2 184 485-694 170-376 (852)
132 PRK07994 DNA polymerase III su 99.5 1.3E-12 2.8E-17 151.4 19.2 186 484-707 12-226 (647)
133 PRK13341 recombination factor 99.5 6.1E-13 1.3E-17 157.2 16.2 181 484-706 24-222 (725)
134 TIGR02928 orc1/cdc6 family rep 99.5 9.2E-13 2E-17 146.8 16.7 202 488-712 15-257 (365)
135 PRK04195 replication factor C 99.5 5.3E-13 1.2E-17 153.4 15.1 191 484-709 10-207 (482)
136 PRK06645 DNA polymerase III su 99.5 1.5E-12 3.2E-17 148.0 17.8 189 483-709 16-237 (507)
137 PRK06893 DNA replication initi 99.4 9.5E-13 2.1E-17 136.4 14.4 160 523-705 40-207 (229)
138 PRK00411 cdc6 cell division co 99.4 1.3E-12 2.9E-17 147.1 16.7 178 522-712 55-265 (394)
139 PRK14958 DNA polymerase III su 99.4 1.7E-12 3.7E-17 148.5 16.9 187 484-708 12-227 (509)
140 PRK14964 DNA polymerase III su 99.4 2.5E-12 5.5E-17 144.9 17.3 188 484-709 9-225 (491)
141 PRK08691 DNA polymerase III su 99.4 2.8E-12 6.1E-17 147.8 17.9 187 484-708 12-227 (709)
142 PRK07764 DNA polymerase III su 99.4 2.1E-12 4.5E-17 154.5 17.5 185 484-706 11-226 (824)
143 KOG2004 Mitochondrial ATP-depe 99.4 1.9E-12 4.1E-17 145.0 14.3 164 215-396 411-596 (906)
144 PRK05563 DNA polymerase III su 99.4 4.2E-12 9E-17 147.4 17.6 187 484-708 12-227 (559)
145 PRK14952 DNA polymerase III su 99.4 4.3E-12 9.3E-17 146.4 17.5 187 484-708 9-226 (584)
146 PRK14959 DNA polymerase III su 99.4 3.1E-12 6.8E-17 146.9 16.0 184 483-704 11-223 (624)
147 PRK14951 DNA polymerase III su 99.4 4.1E-12 9E-17 147.0 17.0 187 484-708 12-232 (618)
148 PRK14963 DNA polymerase III su 99.4 3E-12 6.6E-17 146.1 15.7 183 484-704 10-220 (504)
149 PRK12402 replication factor C 99.4 6.1E-12 1.3E-16 138.5 16.9 188 484-707 11-229 (337)
150 PRK05896 DNA polymerase III su 99.4 1.1E-11 2.3E-16 141.8 19.1 186 484-707 12-226 (605)
151 PRK14969 DNA polymerase III su 99.4 6.7E-12 1.5E-16 144.6 17.3 187 484-708 12-227 (527)
152 COG0466 Lon ATP-dependent Lon 99.4 4E-12 8.8E-17 143.4 14.4 164 215-396 323-508 (782)
153 COG0593 DnaA ATPase involved i 99.4 7E-12 1.5E-16 136.9 15.9 175 522-713 113-298 (408)
154 TIGR02397 dnaX_nterm DNA polym 99.4 1.2E-11 2.7E-16 137.2 18.3 188 483-708 9-225 (355)
155 PRK14087 dnaA chromosomal repl 99.4 6.8E-12 1.5E-16 142.0 16.1 173 523-712 142-330 (450)
156 TIGR02903 spore_lon_C ATP-depe 99.4 3.2E-11 7E-16 141.6 22.2 223 484-755 150-431 (615)
157 PRK14957 DNA polymerase III su 99.4 6.7E-12 1.5E-16 143.5 15.9 185 484-706 12-225 (546)
158 TIGR03420 DnaA_homol_Hda DnaA 99.4 7.5E-12 1.6E-16 129.7 14.8 166 521-711 37-211 (226)
159 PRK07133 DNA polymerase III su 99.4 1.9E-11 4E-16 142.5 19.6 193 483-707 13-225 (725)
160 PLN03025 replication factor C 99.4 1.1E-11 2.5E-16 135.0 16.7 180 484-705 9-201 (319)
161 PTZ00112 origin recognition co 99.4 2E-11 4.3E-16 141.0 18.4 167 525-707 784-987 (1164)
162 PRK14965 DNA polymerase III su 99.4 1.5E-11 3.2E-16 143.4 17.7 187 484-708 12-227 (576)
163 PF05673 DUF815: Protein of un 99.3 1.6E-11 3.5E-16 124.3 15.3 192 482-704 21-244 (249)
164 PRK08084 DNA replication initi 99.3 1.5E-11 3.3E-16 127.9 15.6 159 523-706 46-214 (235)
165 PRK06305 DNA polymerase III su 99.3 3.1E-11 6.8E-16 136.6 19.5 184 484-705 13-226 (451)
166 KOG0989 Replication factor C, 99.3 3.9E-11 8.5E-16 123.1 18.0 185 482-705 30-231 (346)
167 PRK05642 DNA replication initi 99.3 1.9E-11 4.2E-16 126.9 16.3 162 523-709 46-216 (234)
168 PRK04195 replication factor C 99.3 2.7E-11 5.8E-16 139.4 19.0 183 207-418 6-196 (482)
169 PHA02544 44 clamp loader, smal 99.3 9.4E-12 2E-16 135.8 14.2 156 484-672 17-173 (316)
170 COG0488 Uup ATPase components 99.3 1.5E-11 3.3E-16 140.3 16.2 63 294-370 157-219 (530)
171 PF02359 CDC48_N: Cell divisio 99.3 5.8E-12 1.2E-16 109.3 9.7 80 37-118 1-85 (87)
172 PRK14956 DNA polymerase III su 99.3 5.1E-11 1.1E-15 132.9 19.4 178 207-418 10-216 (484)
173 PRK07003 DNA polymerase III su 99.3 4.3E-11 9.4E-16 138.1 19.2 179 207-419 8-215 (830)
174 PRK14962 DNA polymerase III su 99.3 4.5E-11 9.8E-16 135.5 19.0 178 207-418 6-212 (472)
175 PRK14953 DNA polymerase III su 99.3 2.8E-11 6E-16 137.9 17.2 188 483-708 11-227 (486)
176 PRK12323 DNA polymerase III su 99.3 2.9E-11 6.4E-16 137.8 16.9 187 207-428 8-228 (700)
177 PF00308 Bac_DnaA: Bacterial d 99.3 8.2E-12 1.8E-16 128.2 11.4 171 523-709 35-216 (219)
178 PRK06647 DNA polymerase III su 99.3 3.5E-11 7.7E-16 139.1 17.2 187 483-707 11-226 (563)
179 PRK14970 DNA polymerase III su 99.3 3.1E-11 6.7E-16 134.5 16.0 192 483-706 12-214 (367)
180 COG1219 ClpX ATP-dependent pro 99.3 3.7E-11 8E-16 123.4 14.7 132 488-622 61-203 (408)
181 PRK13342 recombination factor 99.3 8.1E-11 1.7E-15 132.8 19.1 172 207-417 4-189 (413)
182 PRK08903 DnaA regulatory inact 99.3 4E-11 8.7E-16 124.3 15.3 159 521-710 41-208 (227)
183 PRK08727 hypothetical protein; 99.3 5.5E-11 1.2E-15 123.5 16.0 158 523-705 42-208 (233)
184 PRK07940 DNA polymerase III su 99.3 9.2E-11 2E-15 130.0 18.3 185 213-425 3-214 (394)
185 PRK14955 DNA polymerase III su 99.3 7.5E-11 1.6E-15 132.2 17.4 187 484-708 12-235 (397)
186 PRK08451 DNA polymerase III su 99.3 9.3E-11 2E-15 133.5 18.1 188 484-709 10-226 (535)
187 PF05673 DUF815: Protein of un 99.3 2E-10 4.4E-15 116.4 18.5 167 208-402 20-213 (249)
188 TIGR02928 orc1/cdc6 family rep 99.3 2.3E-10 4.9E-15 127.6 20.9 200 215-434 15-255 (365)
189 TIGR02640 gas_vesic_GvpN gas v 99.3 2.5E-11 5.3E-16 128.4 11.8 132 522-672 21-198 (262)
190 PRK14954 DNA polymerase III su 99.3 1.6E-10 3.4E-15 134.5 19.3 188 484-709 12-236 (620)
191 PRK10787 DNA-binding ATP-depen 99.3 1.4E-10 3E-15 139.1 19.4 163 215-396 322-506 (784)
192 PRK00411 cdc6 cell division co 99.3 2.3E-10 5E-15 128.9 20.2 201 215-434 30-263 (394)
193 PRK06620 hypothetical protein; 99.3 5.1E-11 1.1E-15 121.7 13.2 144 523-705 45-193 (214)
194 TIGR02902 spore_lonB ATP-depen 99.3 1.3E-10 2.7E-15 134.6 17.8 200 207-435 57-314 (531)
195 PLN03025 replication factor C 99.2 2.1E-10 4.5E-15 125.2 18.3 175 207-416 5-192 (319)
196 PRK14949 DNA polymerase III su 99.2 3E-10 6.4E-15 133.7 20.3 192 207-427 8-222 (944)
197 PRK14948 DNA polymerase III su 99.2 2.1E-10 4.6E-15 134.2 19.2 184 483-704 11-225 (620)
198 PRK14960 DNA polymerase III su 99.2 2.5E-10 5.5E-15 130.6 19.1 188 207-429 7-223 (702)
199 TIGR01650 PD_CobS cobaltochela 99.2 4E-11 8.6E-16 127.7 11.3 143 518-674 60-235 (327)
200 PRK07994 DNA polymerase III su 99.2 3.8E-10 8.2E-15 131.1 20.0 180 207-420 8-216 (647)
201 PRK09111 DNA polymerase III su 99.2 9.2E-11 2E-15 136.2 14.9 190 484-705 20-237 (598)
202 PRK14961 DNA polymerase III su 99.2 3.4E-10 7.4E-15 125.5 18.7 186 207-427 8-222 (363)
203 PRK14950 DNA polymerase III su 99.2 2.1E-10 4.6E-15 134.5 17.8 185 484-706 12-226 (585)
204 COG1474 CDC6 Cdc6-related prot 99.2 2.9E-10 6.3E-15 124.8 17.3 178 521-713 41-249 (366)
205 TIGR00390 hslU ATP-dependent p 99.2 9E-11 2E-15 127.8 13.1 176 216-393 13-343 (441)
206 PHA02544 44 clamp loader, smal 99.2 2.3E-10 5E-15 124.8 16.4 159 207-395 13-172 (316)
207 PRK05342 clpX ATP-dependent pr 99.2 6.6E-10 1.4E-14 123.8 20.0 218 216-435 72-380 (412)
208 TIGR03420 DnaA_homol_Hda DnaA 99.2 8.1E-10 1.8E-14 114.4 19.2 180 218-430 20-206 (226)
209 PRK06645 DNA polymerase III su 99.2 6.6E-10 1.4E-14 126.6 19.9 194 207-429 13-233 (507)
210 PRK00440 rfc replication facto 99.2 1.8E-10 3.8E-15 125.9 14.8 184 484-706 13-208 (319)
211 PRK13407 bchI magnesium chelat 99.2 8.4E-11 1.8E-15 127.2 11.7 161 483-672 3-216 (334)
212 COG1224 TIP49 DNA helicase TIP 99.2 4.3E-10 9.4E-15 117.3 16.3 82 629-713 322-416 (450)
213 PRK12402 replication factor C 99.2 9.1E-10 2E-14 121.3 20.2 181 207-416 7-218 (337)
214 PRK05201 hslU ATP-dependent pr 99.2 9.4E-11 2E-15 127.8 11.8 176 216-393 16-345 (443)
215 PRK00149 dnaA chromosomal repl 99.2 3.5E-10 7.6E-15 129.2 17.0 156 250-418 149-316 (450)
216 PRK14958 DNA polymerase III su 99.2 4.7E-10 1E-14 128.7 17.6 188 207-429 8-224 (509)
217 PRK14964 DNA polymerase III su 99.2 7.9E-10 1.7E-14 124.9 18.8 188 208-430 6-222 (491)
218 TIGR00362 DnaA chromosomal rep 99.2 3.9E-10 8.5E-15 127.2 16.5 166 249-427 136-312 (405)
219 PTZ00112 origin recognition co 99.2 7.2E-10 1.6E-14 128.4 18.4 180 215-414 755-968 (1164)
220 PRK08691 DNA polymerase III su 99.2 7.2E-10 1.6E-14 128.1 18.4 195 207-430 8-225 (709)
221 PRK14971 DNA polymerase III su 99.2 8.2E-10 1.8E-14 129.3 19.1 187 484-708 13-229 (614)
222 cd00009 AAA The AAA+ (ATPases 99.2 2.3E-10 5E-15 108.9 12.0 122 521-658 18-151 (151)
223 PRK06893 DNA replication initi 99.2 5.7E-10 1.2E-14 115.6 15.8 150 250-419 40-198 (229)
224 PRK14963 DNA polymerase III su 99.2 1.4E-09 3E-14 124.5 19.9 178 207-418 6-211 (504)
225 PRK14088 dnaA chromosomal repl 99.1 4.4E-10 9.5E-15 127.2 15.3 156 250-418 131-299 (440)
226 PRK14952 DNA polymerase III su 99.1 1.5E-09 3.3E-14 125.5 19.9 187 207-428 5-222 (584)
227 PRK07764 DNA polymerase III su 99.1 1.2E-09 2.6E-14 131.1 19.5 176 207-416 7-213 (824)
228 PRK14959 DNA polymerase III su 99.1 9.1E-10 2E-14 126.8 17.7 179 207-419 8-215 (624)
229 PRK09087 hypothetical protein; 99.1 2.9E-10 6.2E-15 117.2 11.9 149 524-706 46-200 (226)
230 PRK08084 DNA replication initi 99.1 2.5E-09 5.3E-14 111.3 18.8 173 212-419 19-204 (235)
231 COG1123 ATPase components of v 99.1 1.6E-10 3.5E-15 129.6 10.5 112 243-364 29-218 (539)
232 KOG2028 ATPase related to the 99.1 1.3E-09 2.8E-14 113.7 16.2 190 207-434 130-346 (554)
233 CHL00081 chlI Mg-protoporyphyr 99.1 9.7E-10 2.1E-14 119.1 15.8 161 483-672 12-232 (350)
234 KOG0989 Replication factor C, 99.1 1.1E-09 2.4E-14 112.6 15.2 179 207-417 28-223 (346)
235 cd00009 AAA The AAA+ (ATPases 99.1 1.3E-09 2.9E-14 103.7 15.1 121 248-381 18-150 (151)
236 PRK14957 DNA polymerase III su 99.1 2.7E-09 5.9E-14 122.3 20.0 186 207-427 8-222 (546)
237 PRK14086 dnaA chromosomal repl 99.1 1.2E-09 2.6E-14 125.3 16.7 158 250-417 315-481 (617)
238 PF00308 Bac_DnaA: Bacterial d 99.1 4.5E-09 9.8E-14 107.9 19.5 157 250-416 35-200 (219)
239 PRK05896 DNA polymerase III su 99.1 2E-09 4.4E-14 123.3 18.4 177 207-417 8-213 (605)
240 PRK14951 DNA polymerase III su 99.1 2.1E-09 4.5E-14 124.8 18.6 192 207-427 8-227 (618)
241 PRK05563 DNA polymerase III su 99.1 2.4E-09 5.1E-14 124.6 19.2 187 208-429 9-224 (559)
242 TIGR02030 BchI-ChlI magnesium 99.1 4.2E-10 9.2E-15 122.0 12.0 155 486-672 2-219 (337)
243 PF07724 AAA_2: AAA domain (Cd 99.1 1.9E-10 4.2E-15 113.0 8.4 112 522-638 3-131 (171)
244 TIGR02640 gas_vesic_GvpN gas v 99.1 3.2E-09 6.9E-14 112.4 17.7 133 248-396 20-198 (262)
245 TIGR00382 clpX endopeptidase C 99.1 2.5E-09 5.4E-14 118.5 17.5 219 216-434 78-385 (413)
246 PRK14969 DNA polymerase III su 99.1 1.6E-09 3.6E-14 125.0 16.7 188 207-429 8-224 (527)
247 PRK13341 recombination factor 99.1 2.5E-09 5.4E-14 126.9 18.6 172 207-417 20-210 (725)
248 PRK12422 chromosomal replicati 99.1 2E-09 4.2E-14 121.7 16.9 158 250-419 142-308 (445)
249 COG2812 DnaX DNA polymerase II 99.1 3.9E-10 8.3E-15 126.9 10.8 193 484-708 12-227 (515)
250 PRK07133 DNA polymerase III su 99.1 4.2E-09 9.2E-14 123.1 19.6 184 207-418 10-213 (725)
251 TIGR02397 dnaX_nterm DNA polym 99.1 3.4E-09 7.4E-14 117.6 18.1 176 207-416 6-210 (355)
252 COG1220 HslU ATP-dependent pro 99.1 2.1E-09 4.6E-14 111.4 14.9 83 583-669 252-346 (444)
253 KOG0745 Putative ATP-dependent 99.1 2.5E-09 5.4E-14 114.1 15.7 100 523-622 227-332 (564)
254 COG0714 MoxR-like ATPases [Gen 99.1 6.1E-10 1.3E-14 122.0 11.7 132 521-672 42-203 (329)
255 smart00382 AAA ATPases associa 99.1 6.4E-10 1.4E-14 104.9 9.8 126 523-659 3-147 (148)
256 PRK08903 DnaA regulatory inact 99.1 8.9E-09 1.9E-13 106.8 19.1 177 211-427 14-201 (227)
257 PHA02244 ATPase-like protein 99.1 1.8E-09 3.9E-14 116.2 13.9 127 522-668 119-269 (383)
258 TIGR00678 holB DNA polymerase 99.0 1.1E-09 2.3E-14 110.2 11.4 143 521-692 13-183 (188)
259 PRK07471 DNA polymerase III su 99.0 8.1E-09 1.8E-13 113.7 19.2 184 484-702 15-239 (365)
260 PRK14953 DNA polymerase III su 99.0 6.7E-09 1.4E-13 118.5 19.1 183 207-417 8-213 (486)
261 PRK09112 DNA polymerase III su 99.0 3.2E-09 6.9E-14 116.3 15.6 190 484-706 19-245 (351)
262 PRK00440 rfc replication facto 99.0 7E-09 1.5E-13 113.3 18.4 177 207-418 9-197 (319)
263 PRK06305 DNA polymerase III su 99.0 9.6E-09 2.1E-13 116.6 19.8 176 207-416 9-214 (451)
264 PRK14970 DNA polymerase III su 99.0 8.7E-09 1.9E-13 114.9 19.1 176 207-416 9-201 (367)
265 PRK14965 DNA polymerase III su 99.0 4.9E-09 1.1E-13 122.5 17.7 177 207-417 8-213 (576)
266 PRK05564 DNA polymerase III su 99.0 2.7E-09 5.9E-14 116.1 14.5 170 485-692 1-182 (313)
267 PF07728 AAA_5: AAA domain (dy 99.0 1E-10 2.2E-15 111.4 2.9 109 524-650 1-139 (139)
268 PRK08727 hypothetical protein; 99.0 1E-08 2.2E-13 106.6 17.9 149 249-419 41-199 (233)
269 PRK06647 DNA polymerase III su 99.0 8.6E-09 1.9E-13 119.4 19.1 187 207-428 8-223 (563)
270 TIGR02903 spore_lon_C ATP-depe 99.0 1.9E-08 4E-13 118.5 21.8 166 208-400 147-370 (615)
271 PRK11331 5-methylcytosine-spec 99.0 1.3E-09 2.8E-14 120.4 11.0 121 522-658 194-357 (459)
272 TIGR02442 Cob-chelat-sub cobal 99.0 1.7E-09 3.7E-14 128.0 12.8 158 486-672 2-214 (633)
273 COG5271 MDN1 AAA ATPase contai 99.0 1.8E-08 4E-13 120.3 20.7 133 248-396 887-1047(4600)
274 COG1474 CDC6 Cdc6-related prot 99.0 1.8E-08 3.9E-13 110.7 19.7 201 216-437 18-249 (366)
275 KOG0927 Predicted transporter 99.0 7.1E-09 1.5E-13 114.0 16.0 30 244-273 96-125 (614)
276 COG0542 clpA ATP-binding subun 99.0 2.2E-09 4.7E-14 125.2 11.8 147 520-678 189-352 (786)
277 PRK08451 DNA polymerase III su 99.0 1.9E-08 4E-13 114.9 19.1 189 207-430 6-223 (535)
278 KOG1969 DNA replication checkp 99.0 6.2E-09 1.3E-13 117.7 14.9 171 520-712 324-518 (877)
279 COG2607 Predicted ATPase (AAA+ 99.0 1E-08 2.3E-13 101.9 14.7 194 480-704 52-276 (287)
280 PRK05642 DNA replication initi 99.0 1.8E-08 3.8E-13 104.8 17.2 147 249-417 45-201 (234)
281 TIGR03015 pepcterm_ATPase puta 99.0 7.1E-09 1.5E-13 110.4 14.4 190 524-755 45-267 (269)
282 PRK09111 DNA polymerase III su 99.0 2.6E-08 5.6E-13 116.0 19.8 193 207-428 16-236 (598)
283 PRK14948 DNA polymerase III su 99.0 2.5E-08 5.4E-13 116.9 19.7 184 207-418 8-216 (620)
284 PRK14955 DNA polymerase III su 99.0 1.1E-08 2.4E-13 114.8 16.0 177 207-417 8-221 (397)
285 PRK14954 DNA polymerase III su 98.9 3.1E-08 6.7E-13 115.5 19.8 185 207-419 8-223 (620)
286 PRK10636 putative ABC transpor 98.9 1.9E-09 4.1E-14 128.2 9.6 32 243-274 21-52 (638)
287 TIGR01650 PD_CobS cobaltochela 98.9 2.1E-09 4.6E-14 114.6 8.8 137 247-397 62-234 (327)
288 PRK14087 dnaA chromosomal repl 98.9 1.4E-08 3E-13 115.2 15.8 166 250-429 142-323 (450)
289 PF01078 Mg_chelatase: Magnesi 98.9 5.7E-10 1.2E-14 111.0 4.0 142 487-662 2-205 (206)
290 PRK07399 DNA polymerase III su 98.9 4.4E-09 9.5E-14 113.6 10.7 183 486-703 2-223 (314)
291 PRK05707 DNA polymerase III su 98.9 1.6E-08 3.5E-13 109.8 15.1 147 521-692 21-195 (328)
292 smart00382 AAA ATPases associa 98.9 5.9E-09 1.3E-13 98.2 10.4 128 249-383 2-147 (148)
293 PRK14950 DNA polymerase III su 98.9 3.9E-08 8.4E-13 115.6 19.1 176 207-416 8-213 (585)
294 COG2607 Predicted ATPase (AAA+ 98.9 3.2E-08 6.9E-13 98.5 15.4 168 208-403 53-246 (287)
295 PRK04132 replication factor C 98.9 1.9E-08 4.1E-13 120.0 15.9 155 525-705 567-735 (846)
296 PHA02244 ATPase-like protein 98.9 4.5E-08 9.8E-13 105.5 16.8 122 248-385 118-263 (383)
297 COG5271 MDN1 AAA ATPase contai 98.9 3.6E-08 7.8E-13 117.9 17.1 137 519-673 1540-1704(4600)
298 PRK06620 hypothetical protein; 98.9 3.8E-08 8.1E-13 100.7 15.3 134 250-419 45-184 (214)
299 COG0470 HolB ATPase involved i 98.9 1E-08 2.2E-13 112.3 11.5 126 523-669 25-178 (325)
300 TIGR00764 lon_rel lon-related 98.9 1.3E-08 2.9E-13 119.2 12.7 55 480-549 10-64 (608)
301 PF06068 TIP49: TIP49 C-termin 98.9 8.4E-09 1.8E-13 109.9 9.6 66 487-560 23-90 (398)
302 COG2812 DnaX DNA polymerase II 98.8 1.9E-08 4.1E-13 113.4 12.8 195 208-431 9-226 (515)
303 PRK13549 xylose transporter AT 98.8 1.1E-08 2.4E-13 118.9 10.8 32 243-274 25-56 (506)
304 PRK13407 bchI magnesium chelat 98.8 1.3E-08 2.8E-13 110.2 10.4 159 210-395 3-215 (334)
305 PRK11147 ABC transporter ATPas 98.8 7.2E-09 1.6E-13 123.5 9.0 32 243-274 23-54 (635)
306 PRK08058 DNA polymerase III su 98.8 1.1E-08 2.4E-13 111.7 9.8 149 486-670 3-180 (329)
307 PF07728 AAA_5: AAA domain (dy 98.8 2.8E-09 6E-14 101.5 3.8 109 251-374 1-139 (139)
308 COG0593 DnaA ATPase involved i 98.8 1.4E-07 3.1E-12 103.5 17.3 157 248-416 112-278 (408)
309 PF07726 AAA_3: ATPase family 98.8 2E-09 4.3E-14 98.3 2.4 104 524-650 1-129 (131)
310 PRK13531 regulatory ATPase Rav 98.8 3E-08 6.6E-13 110.6 12.0 135 521-671 38-193 (498)
311 COG0714 MoxR-like ATPases [Gen 98.8 5.1E-08 1.1E-12 106.9 13.5 128 248-392 42-199 (329)
312 PRK09087 hypothetical protein; 98.8 5.6E-08 1.2E-12 100.3 13.0 141 249-417 44-188 (226)
313 KOG1969 DNA replication checkp 98.8 1.2E-07 2.7E-12 107.4 16.4 198 208-420 264-506 (877)
314 PRK14971 DNA polymerase III su 98.8 2.1E-07 4.5E-12 109.3 19.2 177 207-417 9-215 (614)
315 TIGR03269 met_CoM_red_A2 methy 98.8 2.3E-08 5E-13 116.8 10.8 31 243-273 20-50 (520)
316 PF07724 AAA_2: AAA domain (Cd 98.8 3.1E-08 6.6E-13 97.5 10.0 112 248-361 2-130 (171)
317 PRK11331 5-methylcytosine-spec 98.8 9.4E-08 2E-12 105.8 14.7 141 214-382 174-357 (459)
318 smart00350 MCM minichromosome 98.8 4E-08 8.7E-13 113.6 12.4 132 522-673 236-401 (509)
319 PRK09700 D-allose transporter 98.8 1.7E-08 3.6E-13 117.6 9.2 32 243-274 25-56 (510)
320 COG4172 ABC-type uncharacteriz 98.8 3E-07 6.5E-12 98.0 17.3 109 243-361 30-218 (534)
321 PRK09112 DNA polymerase III su 98.8 4E-07 8.7E-12 99.8 19.0 182 209-419 17-235 (351)
322 PRK10982 galactose/methyl gala 98.7 2.3E-08 5.1E-13 115.8 9.7 32 243-274 18-49 (491)
323 PRK15064 ABC transporter ATP-b 98.7 2.8E-08 6E-13 116.3 10.2 32 243-274 21-52 (530)
324 PRK10762 D-ribose transporter 98.7 2.2E-08 4.7E-13 116.4 9.2 32 243-274 24-55 (501)
325 PRK10938 putative molybdenum t 98.7 2E-08 4.4E-13 116.3 8.9 32 243-274 23-54 (490)
326 PRK15134 microcin C ABC transp 98.7 2.9E-08 6.2E-13 116.1 10.2 32 243-274 29-60 (529)
327 TIGR00368 Mg chelatase-related 98.7 4.3E-08 9.2E-13 112.0 11.2 144 485-662 189-394 (499)
328 PRK06964 DNA polymerase III su 98.7 4.2E-08 9.1E-13 106.5 10.6 133 520-671 19-203 (342)
329 TIGR02031 BchD-ChlD magnesium 98.7 1.1E-07 2.5E-12 111.3 14.8 135 523-673 17-175 (589)
330 COG1224 TIP49 DNA helicase TIP 98.7 5.5E-07 1.2E-11 94.5 18.0 60 215-285 39-103 (450)
331 PLN03073 ABC transporter F fam 98.7 2.8E-08 6.2E-13 118.8 9.6 30 243-272 197-226 (718)
332 KOG1514 Origin recognition com 98.7 2.7E-07 5.9E-12 104.6 16.5 204 524-758 424-659 (767)
333 PRK15439 autoinducer 2 ABC tra 98.7 4E-08 8.6E-13 114.3 9.9 32 243-274 31-62 (510)
334 TIGR00602 rad24 checkpoint pro 98.7 1.1E-07 2.5E-12 110.7 13.4 200 483-710 79-329 (637)
335 smart00763 AAA_PrkA PrkA AAA d 98.7 8.5E-08 1.9E-12 103.5 11.3 59 489-555 52-118 (361)
336 TIGR02030 BchI-ChlI magnesium 98.7 1.6E-07 3.4E-12 102.2 13.5 155 213-395 2-218 (337)
337 PRK08116 hypothetical protein; 98.7 3.5E-08 7.5E-13 104.5 8.1 131 522-671 114-259 (268)
338 TIGR02974 phageshock_pspF psp 98.7 1.1E-07 2.5E-12 103.6 12.3 169 522-709 22-233 (329)
339 PF05621 TniB: Bacterial TniB 98.7 5.8E-07 1.3E-11 94.4 16.8 182 248-439 60-275 (302)
340 TIGR00678 holB DNA polymerase 98.7 3.1E-07 6.7E-12 92.3 14.2 143 248-416 13-183 (188)
341 TIGR00602 rad24 checkpoint pro 98.7 3E-07 6.5E-12 107.2 15.6 63 207-277 76-138 (637)
342 CHL00081 chlI Mg-protoporyphyr 98.7 1.7E-07 3.7E-12 101.8 12.7 160 210-395 12-231 (350)
343 TIGR02633 xylG D-xylose ABC tr 98.7 7.6E-08 1.6E-12 111.9 10.8 32 243-274 21-52 (500)
344 KOG0991 Replication factor C, 98.7 7.5E-08 1.6E-12 95.2 8.7 182 484-705 23-215 (333)
345 PRK11819 putative ABC transpor 98.7 8E-08 1.7E-12 112.9 10.4 32 243-274 27-58 (556)
346 COG1219 ClpX ATP-dependent pro 98.6 7.3E-08 1.6E-12 99.5 8.4 98 249-346 97-203 (408)
347 PRK13409 putative ATPase RIL; 98.6 6.8E-08 1.5E-12 113.4 9.3 30 246-275 96-125 (590)
348 PRK09862 putative ATP-dependen 98.6 2.5E-07 5.5E-12 105.2 13.4 122 522-662 210-391 (506)
349 PF13177 DNA_pol3_delta2: DNA 98.6 7.1E-08 1.5E-12 94.3 7.7 134 492-659 1-161 (162)
350 COG1116 TauB ABC-type nitrate/ 98.6 1.4E-07 3.1E-12 95.6 9.9 33 243-275 23-55 (248)
351 KOG0066 eIF2-interacting prote 98.6 3.2E-07 7E-12 98.0 12.9 31 243-273 284-314 (807)
352 TIGR03719 ABC_ABC_ChvD ATP-bin 98.6 1E-07 2.3E-12 111.9 10.2 32 243-274 25-56 (552)
353 PRK11608 pspF phage shock prot 98.6 1.2E-07 2.6E-12 103.5 10.0 169 522-709 29-240 (326)
354 PRK06871 DNA polymerase III su 98.6 4E-07 8.6E-12 98.3 13.7 129 520-671 22-178 (325)
355 KOG0991 Replication factor C, 98.6 3E-07 6.5E-12 91.0 11.5 135 207-370 19-162 (333)
356 PRK11288 araG L-arabinose tran 98.6 4.8E-08 1E-12 113.5 7.1 32 243-274 24-55 (501)
357 PRK05564 DNA polymerase III su 98.6 9.9E-07 2.2E-11 96.0 16.8 152 213-396 2-165 (313)
358 TIGR02655 circ_KaiC circadian 98.6 4.9E-06 1.1E-10 95.9 23.3 78 518-595 259-367 (484)
359 KOG1942 DNA helicase, TBP-inte 98.6 6.6E-07 1.4E-11 91.3 13.9 40 521-560 63-104 (456)
360 PRK07471 DNA polymerase III su 98.6 1.7E-06 3.7E-11 95.5 18.5 180 209-419 13-233 (365)
361 PRK10261 glutathione transport 98.6 1E-07 2.2E-12 113.4 9.5 32 243-274 36-67 (623)
362 TIGR01817 nifA Nif-specific re 98.6 1.8E-07 4E-12 109.3 11.1 197 484-710 192-429 (534)
363 PRK07993 DNA polymerase III su 98.6 4.5E-07 9.7E-12 98.9 13.3 150 520-692 22-196 (334)
364 COG1220 HslU ATP-dependent pro 98.6 5.1E-07 1.1E-11 94.0 12.7 83 309-393 251-346 (444)
365 KOG0062 ATPase component of AB 98.6 2.2E-06 4.8E-11 94.2 18.2 109 243-366 100-260 (582)
366 PRK13531 regulatory ATPase Rav 98.6 6E-07 1.3E-11 100.3 13.7 135 247-394 37-192 (498)
367 PRK15424 propionate catabolism 98.6 2.3E-07 4.9E-12 106.8 10.4 195 485-709 216-465 (538)
368 COG1221 PspF Transcriptional r 98.6 1.7E-07 3.6E-12 102.6 8.7 199 485-713 75-313 (403)
369 PF07726 AAA_3: ATPase family 98.5 2.8E-08 6.1E-13 90.8 1.6 104 251-374 1-129 (131)
370 COG1120 FepC ABC-type cobalami 98.5 2.1E-07 4.6E-12 96.1 8.1 40 243-282 22-63 (258)
371 PRK08769 DNA polymerase III su 98.5 8.8E-07 1.9E-11 95.5 12.8 154 520-697 24-205 (319)
372 PRK11388 DNA-binding transcrip 98.5 4E-07 8.6E-12 108.9 11.2 195 485-709 322-554 (638)
373 PF06068 TIP49: TIP49 C-termin 98.5 3.8E-06 8.3E-11 89.9 16.9 64 214-285 23-88 (398)
374 COG0470 HolB ATPase involved i 98.5 9.3E-07 2E-11 96.7 12.5 145 217-390 3-175 (325)
375 PRK05022 anaerobic nitric oxid 98.5 1.4E-06 3E-11 101.2 14.5 195 487-711 186-422 (509)
376 TIGR03015 pepcterm_ATPase puta 98.5 5.4E-06 1.2E-10 88.2 17.8 173 250-436 44-249 (269)
377 PRK04132 replication factor C 98.5 2.5E-06 5.5E-11 102.1 16.5 154 248-423 563-730 (846)
378 KOG0745 Putative ATP-dependent 98.5 3.5E-07 7.6E-12 98.1 8.3 97 249-345 226-331 (564)
379 PF01078 Mg_chelatase: Magnesi 98.5 2.4E-07 5.3E-12 92.3 6.6 46 214-274 2-47 (206)
380 PF05621 TniB: Bacterial TniB 98.5 2.6E-06 5.6E-11 89.5 14.3 177 522-713 61-273 (302)
381 PRK05707 DNA polymerase III su 98.5 3.3E-06 7.2E-11 91.9 15.8 128 249-395 22-177 (328)
382 PRK08699 DNA polymerase III su 98.5 7E-07 1.5E-11 97.0 10.3 131 520-670 19-183 (325)
383 PRK15429 formate hydrogenlyase 98.5 1.3E-06 2.8E-11 105.2 13.7 195 485-710 373-610 (686)
384 TIGR02442 Cob-chelat-sub cobal 98.5 9.1E-07 2E-11 105.0 12.1 156 213-394 2-212 (633)
385 TIGR02329 propionate_PrpR prop 98.4 6.4E-07 1.4E-11 103.2 10.2 197 485-709 209-450 (526)
386 PRK13765 ATP-dependent proteas 98.4 8E-07 1.7E-11 104.0 11.2 53 480-547 23-75 (637)
387 PRK06090 DNA polymerase III su 98.4 1.2E-06 2.5E-11 94.4 11.5 129 520-670 23-178 (319)
388 PRK07399 DNA polymerase III su 98.4 4E-06 8.6E-11 90.8 15.6 178 213-421 2-218 (314)
389 PRK08181 transposase; Validate 98.4 4.4E-07 9.5E-12 95.6 7.9 71 522-594 106-180 (269)
390 COG1121 ZnuC ABC-type Mn/Zn tr 98.4 4.9E-07 1.1E-11 93.0 7.9 113 243-366 24-204 (254)
391 COG3842 PotA ABC-type spermidi 98.4 3.4E-07 7.4E-12 98.9 7.1 110 243-362 25-198 (352)
392 COG1118 CysA ABC-type sulfate/ 98.4 6E-07 1.3E-11 93.0 8.4 110 243-362 22-199 (345)
393 COG3829 RocR Transcriptional r 98.4 6.2E-07 1.3E-11 99.8 8.9 196 484-709 241-479 (560)
394 COG0606 Predicted ATPase with 98.4 5.1E-08 1.1E-12 106.9 0.3 48 484-546 175-222 (490)
395 PRK09302 circadian clock prote 98.4 2.1E-05 4.5E-10 91.6 21.6 78 518-595 269-377 (509)
396 COG1136 SalX ABC-type antimicr 98.4 1.1E-06 2.4E-11 89.1 9.5 32 243-274 25-56 (226)
397 PRK09183 transposase/IS protei 98.4 6.4E-07 1.4E-11 94.4 8.0 101 522-637 102-206 (259)
398 PRK08058 DNA polymerase III su 98.4 3.4E-06 7.5E-11 92.2 14.0 147 214-393 4-179 (329)
399 cd03216 ABC_Carb_Monos_I This 98.4 8.5E-07 1.8E-11 86.9 8.2 111 243-364 20-145 (163)
400 COG3839 MalK ABC-type sugar tr 98.4 6.8E-07 1.5E-11 96.0 8.0 109 243-361 23-194 (338)
401 PF00158 Sigma54_activat: Sigm 98.4 1.6E-06 3.4E-11 85.2 9.7 110 522-651 22-155 (168)
402 COG2884 FtsE Predicted ATPase 98.4 1.5E-06 3.3E-11 84.0 9.1 111 243-364 22-200 (223)
403 KOG2680 DNA helicase TIP49, TB 98.4 1E-05 2.2E-10 83.1 15.4 82 629-713 319-413 (454)
404 PRK08116 hypothetical protein; 98.4 2.5E-06 5.5E-11 90.3 11.8 100 249-360 114-220 (268)
405 PRK10820 DNA-binding transcrip 98.4 1.2E-06 2.6E-11 101.8 10.1 196 484-709 200-437 (520)
406 PF03215 Rad17: Rad17 cell cyc 98.4 3.8E-06 8.3E-11 96.3 14.0 172 523-710 46-269 (519)
407 COG1126 GlnQ ABC-type polar am 98.4 1.2E-06 2.7E-11 86.5 8.4 108 243-361 22-196 (240)
408 cd03222 ABC_RNaseL_inhibitor T 98.4 7.5E-07 1.6E-11 88.2 6.9 110 244-363 20-134 (177)
409 PRK09183 transposase/IS protei 98.3 1.9E-06 4.1E-11 90.9 10.1 75 246-321 99-177 (259)
410 COG1124 DppF ABC-type dipeptid 98.3 1.4E-06 3E-11 87.9 8.5 111 243-363 27-204 (252)
411 PRK06526 transposase; Provisio 98.3 6.1E-07 1.3E-11 94.0 6.2 71 522-594 98-172 (254)
412 PF13401 AAA_22: AAA domain; P 98.3 2.7E-06 5.8E-11 79.8 9.8 99 248-358 3-125 (131)
413 PRK07952 DNA replication prote 98.3 1.5E-06 3.3E-11 90.2 8.8 100 523-637 100-205 (244)
414 TIGR00764 lon_rel lon-related 98.3 9.9E-06 2.1E-10 95.3 16.4 53 209-276 12-64 (608)
415 COG1122 CbiO ABC-type cobalt t 98.3 1E-07 2.2E-12 98.3 -0.5 97 243-339 24-123 (235)
416 PF13173 AAA_14: AAA domain 98.3 3.5E-06 7.7E-11 78.9 10.1 70 249-320 2-73 (128)
417 PF13173 AAA_14: AAA domain 98.3 2.7E-06 5.8E-11 79.8 9.3 119 523-663 3-126 (128)
418 COG1239 ChlI Mg-chelatase subu 98.3 3.6E-06 7.9E-11 91.3 11.4 161 484-674 13-234 (423)
419 COG4619 ABC-type uncharacteriz 98.3 3.4E-06 7.3E-11 79.8 9.6 33 243-275 23-55 (223)
420 KOG2227 Pre-initiation complex 98.3 1.7E-05 3.7E-10 86.6 16.3 181 519-712 172-382 (529)
421 PRK08939 primosomal protein Dn 98.3 1.2E-06 2.6E-11 94.3 7.6 101 521-637 155-261 (306)
422 TIGR00368 Mg chelatase-related 98.3 6.7E-06 1.4E-10 94.2 13.6 48 212-274 189-236 (499)
423 COG2204 AtoC Response regulato 98.3 2.8E-06 6.1E-11 94.7 10.1 196 487-713 140-378 (464)
424 PRK08181 transposase; Validate 98.3 2.9E-06 6.3E-11 89.4 9.5 73 248-322 105-181 (269)
425 PRK12377 putative replication 98.3 2.5E-06 5.3E-11 88.9 8.6 70 522-593 101-175 (248)
426 COG1125 OpuBA ABC-type proline 98.3 2.1E-06 4.5E-11 86.7 7.6 132 243-400 21-155 (309)
427 PF00158 Sigma54_activat: Sigm 98.3 1.1E-05 2.3E-10 79.2 12.4 119 217-360 1-143 (168)
428 PF01695 IstB_IS21: IstB-like 98.3 9.2E-07 2E-11 87.7 4.9 101 521-637 46-150 (178)
429 PF01637 Arch_ATPase: Archaeal 98.3 1.2E-05 2.7E-10 83.0 13.6 181 218-418 2-228 (234)
430 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.2 1.8E-06 3.8E-11 82.8 6.6 77 243-319 20-99 (144)
431 cd03214 ABC_Iron-Siderophores_ 98.2 1.7E-06 3.7E-11 86.3 6.8 112 243-364 19-161 (180)
432 cd03228 ABCC_MRP_Like The MRP 98.2 2.4E-06 5.2E-11 84.4 7.6 110 243-364 22-158 (171)
433 COG1239 ChlI Mg-chelatase subu 98.2 1.5E-05 3.2E-10 86.6 13.7 159 211-396 13-232 (423)
434 PF01637 Arch_ATPase: Archaeal 98.2 2.5E-06 5.5E-11 88.2 7.6 160 522-693 20-227 (234)
435 COG1484 DnaC DNA replication p 98.2 2.8E-06 6.1E-11 89.1 7.9 68 521-593 104-179 (254)
436 PRK06526 transposase; Provisio 98.2 3.1E-06 6.7E-11 88.8 8.2 72 248-321 97-172 (254)
437 PF13177 DNA_pol3_delta2: DNA 98.2 1.5E-05 3.2E-10 77.9 12.4 132 219-381 1-159 (162)
438 PRK06921 hypothetical protein; 98.2 3.2E-06 7E-11 89.4 8.1 69 521-592 116-188 (266)
439 PF13401 AAA_22: AAA domain; P 98.2 8E-06 1.7E-10 76.5 10.0 98 523-635 5-126 (131)
440 cd03246 ABCC_Protease_Secretio 98.2 5.4E-06 1.2E-10 82.1 9.1 109 243-362 22-157 (173)
441 COG3604 FhlA Transcriptional r 98.2 6.2E-06 1.3E-10 90.7 9.9 195 484-709 219-456 (550)
442 PRK06835 DNA replication prote 98.2 3.1E-06 6.6E-11 91.9 7.6 100 523-637 184-289 (329)
443 cd03229 ABC_Class3 This class 98.2 2.1E-06 4.5E-11 85.5 5.8 112 243-364 20-164 (178)
444 cd03247 ABCC_cytochrome_bd The 98.2 4.9E-06 1.1E-10 82.8 8.5 110 243-364 22-160 (178)
445 cd03230 ABC_DR_subfamily_A Thi 98.2 3.3E-06 7.2E-11 83.6 7.2 109 243-362 20-156 (173)
446 cd00267 ABC_ATPase ABC (ATP-bi 98.2 2.5E-06 5.4E-11 83.0 5.8 78 243-320 19-110 (157)
447 COG1484 DnaC DNA replication p 98.2 1.5E-05 3.2E-10 83.8 12.0 72 248-320 104-179 (254)
448 PRK12377 putative replication 98.2 1.2E-05 2.6E-10 83.8 11.1 70 249-320 101-175 (248)
449 smart00350 MCM minichromosome 98.2 7.2E-06 1.6E-10 95.0 10.5 132 249-396 236-400 (509)
450 COG1119 ModF ABC-type molybden 98.2 7.3E-06 1.6E-10 82.8 8.9 32 243-274 51-82 (257)
451 COG4608 AppF ABC-type oligopep 98.1 4.1E-06 8.8E-11 86.3 7.0 110 243-362 33-171 (268)
452 COG3840 ThiQ ABC-type thiamine 98.1 2.9E-06 6.3E-11 81.4 5.5 112 243-364 19-193 (231)
453 cd01120 RecA-like_NTPases RecA 98.1 1.9E-05 4.2E-10 76.6 11.5 111 525-639 2-139 (165)
454 PRK06871 DNA polymerase III su 98.1 5.2E-05 1.1E-09 82.1 15.7 127 249-395 24-178 (325)
455 PRK06964 DNA polymerase III su 98.1 1.9E-05 4.1E-10 86.1 12.3 132 247-394 19-202 (342)
456 TIGR02031 BchD-ChlD magnesium 98.1 1.3E-05 2.9E-10 94.1 11.9 134 250-396 17-174 (589)
457 PRK06921 hypothetical protein; 98.1 1.2E-05 2.7E-10 84.9 10.5 69 248-319 116-188 (266)
458 COG1221 PspF Transcriptional r 98.1 7.6E-06 1.6E-10 89.8 8.9 126 210-360 73-223 (403)
459 PRK09862 putative ATP-dependen 98.1 1.5E-05 3.3E-10 90.9 11.4 126 245-386 206-391 (506)
460 COG1245 Predicted ATPase, RNas 98.1 3.6E-05 7.7E-10 83.7 13.3 31 247-277 98-128 (591)
461 PRK11650 ugpC glycerol-3-phosp 98.1 4.5E-06 9.8E-11 92.1 6.8 32 243-274 24-55 (356)
462 COG1126 GlnQ ABC-type polar am 98.1 2.4E-06 5.3E-11 84.5 4.1 46 511-556 15-64 (240)
463 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.1 5.3E-06 1.1E-10 85.4 6.9 32 243-274 24-55 (218)
464 cd03213 ABCG_EPDR ABCG transpo 98.1 8.8E-06 1.9E-10 82.2 8.2 108 243-361 29-171 (194)
465 TIGR02974 phageshock_pspF psp 98.1 1.4E-05 3E-10 87.3 10.3 146 218-391 2-178 (329)
466 PRK11608 pspF phage shock prot 98.1 1.7E-05 3.6E-10 86.7 10.9 149 214-390 5-184 (326)
467 COG3829 RocR Transcriptional r 98.1 7.8E-06 1.7E-10 91.2 8.2 154 211-392 241-426 (560)
468 PRK06835 DNA replication prote 98.1 3.3E-05 7.1E-10 84.0 12.8 100 249-360 183-288 (329)
469 COG4618 ArpD ABC-type protease 98.1 8E-06 1.7E-10 89.9 8.0 43 243-285 356-400 (580)
470 cd03269 ABC_putative_ATPase Th 98.1 8.5E-06 1.9E-10 83.3 7.9 32 243-274 20-51 (210)
471 PRK11432 fbpC ferric transport 98.1 5.5E-06 1.2E-10 91.3 6.8 32 243-274 26-57 (351)
472 PF05729 NACHT: NACHT domain 98.1 3.2E-05 6.9E-10 75.4 11.5 140 251-397 2-164 (166)
473 cd03238 ABC_UvrA The excision 98.1 2.1E-05 4.5E-10 77.8 10.1 109 243-362 15-150 (176)
474 PTZ00111 DNA replication licen 98.1 6.6E-06 1.4E-10 98.1 7.6 133 520-672 490-657 (915)
475 KOG0990 Replication factor C, 98.1 2.3E-05 4.9E-10 81.8 10.5 158 485-677 38-208 (360)
476 PRK07993 DNA polymerase III su 98.1 0.00012 2.6E-09 80.0 16.9 127 248-393 23-177 (334)
477 COG1131 CcmA ABC-type multidru 98.1 6.2E-06 1.3E-10 88.6 6.8 33 243-275 25-57 (293)
478 PRK13541 cytochrome c biogenes 98.1 1.6E-05 3.5E-10 80.3 9.4 32 243-274 20-51 (195)
479 TIGR02915 PEP_resp_reg putativ 98.1 8.4E-06 1.8E-10 93.5 8.3 167 523-710 163-373 (445)
480 PF03215 Rad17: Rad17 cell cyc 98.1 8.4E-05 1.8E-09 85.5 16.2 66 207-280 11-76 (519)
481 cd03223 ABCD_peroxisomal_ALDP 98.1 1.1E-05 2.5E-10 79.2 8.0 77 243-319 21-120 (166)
482 TIGR01817 nifA Nif-specific re 98.1 5E-05 1.1E-09 89.0 14.8 63 212-285 193-258 (534)
483 PF14532 Sigma54_activ_2: Sigm 98.1 3E-06 6.6E-11 80.5 3.8 85 522-635 21-108 (138)
484 PRK05022 anaerobic nitric oxid 98.0 0.00012 2.6E-09 85.2 17.6 150 213-390 185-365 (509)
485 PRK07952 DNA replication prote 98.0 1.1E-05 2.5E-10 83.7 8.2 69 250-320 100-174 (244)
486 COG4525 TauB ABC-type taurine 98.0 1.3E-05 2.7E-10 77.9 7.7 32 243-274 25-56 (259)
487 PRK15424 propionate catabolism 98.0 1E-05 2.2E-10 93.3 8.6 125 212-361 216-373 (538)
488 KOG2035 Replication factor C, 98.0 0.00027 5.8E-09 72.4 17.6 177 209-419 7-223 (351)
489 PF00910 RNA_helicase: RNA hel 98.0 1.6E-05 3.4E-10 72.0 8.1 94 525-636 1-107 (107)
490 PRK05917 DNA polymerase III su 98.0 2.6E-05 5.7E-10 82.5 10.8 118 520-659 17-154 (290)
491 PF01695 IstB_IS21: IstB-like 98.0 6.3E-06 1.4E-10 81.8 5.8 71 247-319 45-119 (178)
492 cd03301 ABC_MalK_N The N-termi 98.0 6.5E-06 1.4E-10 84.4 6.1 32 243-274 20-51 (213)
493 COG4586 ABC-type uncharacteriz 98.0 1.2E-05 2.6E-10 82.0 7.7 118 243-370 44-226 (325)
494 PRK09452 potA putrescine/sperm 98.0 6.7E-06 1.5E-10 91.3 6.5 32 243-274 34-65 (375)
495 cd03259 ABC_Carb_Solutes_like 98.0 9.4E-06 2E-10 83.2 7.1 32 243-274 20-51 (213)
496 KOG2227 Pre-initiation complex 98.0 9.1E-05 2E-09 81.0 14.8 186 215-419 150-363 (529)
497 TIGR03864 PQQ_ABC_ATP ABC tran 98.0 9.8E-06 2.1E-10 84.5 7.4 32 243-274 21-52 (236)
498 TIGR03265 PhnT2 putative 2-ami 98.0 7.9E-06 1.7E-10 90.1 6.9 32 243-274 24-55 (353)
499 PRK08699 DNA polymerase III su 98.0 3.3E-05 7.2E-10 84.0 11.6 132 247-394 19-183 (325)
500 PRK13539 cytochrome c biogenes 98.0 1.2E-05 2.7E-10 82.0 7.8 32 243-274 22-53 (207)
No 1
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-119 Score=983.11 Aligned_cols=690 Identities=61% Similarity=1.002 Sum_probs=641.6
Q ss_pred CccchhhhhccCCCceEEEccccCCCCcEEEeCHHHHHhcCCCCCCEEEEecCCCceEEEEEEecCCCCCCeEEecHHHH
Q 003525 22 KDYSTAILDRKKSPNRLVVDEAINDDNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVLSDELCEASKVRVNKVVR 101 (813)
Q Consensus 22 ~~~~~~~~~~~~~p~~~~v~~~~~~~~~~v~l~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r 101 (813)
.+++++|+..+..++.++|.. .++..+.+.+++..|..+++..| |.+.|..+...++.+...+. ....+.++...|
T Consensus 2 ~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~l~~g--~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~r 77 (693)
T KOG0730|consen 2 ESPSTAILPVKCPQNNLVVLS-INDDASVVVLSEGAMDKLGLLRG--VLLDGKKRREPVDAVVQDET-SELIGRQTMVSR 77 (693)
T ss_pred CcccccccccccCCCCeEEec-CCCccchheecHHHHhhhcCCcc--eEEECccccCCccceeccCC-ccccchhhheec
Confidence 467899999988889999988 55556689999999999999999 99999886666554443344 678889999999
Q ss_pred hhccccCCCeEEEEecCCCCCCcEEEecccCCcccCcchhhHHHHhhHhhhhcCcccccCcEEEEecCceeEEEEEEEec
Q 003525 102 SNLRVRLGDVVSVHPCPDVKYGRRVHILPIDDTIEGVTGNLFDAYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETD 181 (813)
Q Consensus 102 ~~~~~~~g~~v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~ 181 (813)
.++.++.|+.|.++.++.++.+.++.+.|+..+..++..+.++.+.+.|+....+++..|+++ ..+..+.|+++...
T Consensus 78 ~~l~~~~~~~~~~~~~p~v~~~~~i~~l~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 154 (693)
T KOG0730|consen 78 SNLRLQLGRLLHSSDCPSVKRPARIAVLPVDDTSEGIAGELFDVLERPFLLEALRPLVKGDTF---AGLNPAEFKVLELD 154 (693)
T ss_pred cchhhcccceecccCCCCccccceeeeeehhhccccchhhhhhhhhhhhhhhhhCccccccch---hhhhhhhhhccccc
Confidence 999999999999998888888888999999988888888888889999998888999999887 44456778888887
Q ss_pred CCceeeeCCCceEEecCCCCccccccccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCc
Q 003525 182 PGEYCVVAPDTEIFCEGEPVKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSG 261 (813)
Q Consensus 182 ~~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsG 261 (813)
+.. ++.++|.+.+.+++......+ +.+++ .++||+..++..+++++.+|+.+|.++.++|+.+|+++|+|||||||
T Consensus 155 ~~~--~v~~~t~~~~~~~~~~~~~~~-~~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~G 230 (693)
T KOG0730|consen 155 PSP--QVTPDTELSYLGEPAKREEEE-LPEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTG 230 (693)
T ss_pred cch--hcCccchhhhcCCCccccccc-ccccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCC
Confidence 766 778899988888777654444 47778 89999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCeEEEEechhhhhhhcchhHHHHHHHHHHHHhcC-CcEEEeccchhccCCCCCCchhHHHHHHHHHH
Q 003525 262 KTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA-PSIIFIDELDSIAPKREKTHGEVERRIVSQLL 340 (813)
Q Consensus 262 KTtLar~la~~l~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~-p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll 340 (813)
||.+++++|++.+..++.++++++++++.|++++++|.+|+++...+ |+++||||+|.+++++....+ ++++++.+|+
T Consensus 231 kt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqll 309 (693)
T KOG0730|consen 231 KTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLL 309 (693)
T ss_pred hHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 999999999999999876666 8899999999
Q ss_pred HHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhHHHHhhcCCCchH
Q 003525 341 TLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGS 420 (813)
Q Consensus 341 ~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~ 420 (813)
++|+++....+++|+++||+|+.||+++|| |||+++++++.|+..+|.+|++.+++++++.+++++..++..++||+|+
T Consensus 310 tL~dg~~~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGa 388 (693)
T KOG0730|consen 310 TLLDGLKPDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGA 388 (693)
T ss_pred HHHhhCcCcCcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHH
Confidence 999999999999999999999999999999 9999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccccccchhhhHHhhhhccccchhhhcccccCCCCcccccccccCCcccccccccchhhhhh
Q 003525 421 DLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLDNVKREL 500 (813)
Q Consensus 421 dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~p~~~~~~~~~~~~~~~~~i~g~~~~k~~L 500 (813)
|+.++|++|++.+.++ ++++|..|+..+.|+++|+..++.|+++|+||||++++|..|
T Consensus 389 DL~~l~~ea~~~~~r~----------------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~el 446 (693)
T KOG0730|consen 389 DLAALCREASLQATRR----------------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKREL 446 (693)
T ss_pred HHHHHHHHHHHHHhhh----------------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHH
Confidence 9999999999988765 456788899999999999999999999999999999999999
Q ss_pred hccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhhhcccccHHHHHHHHHHHHhC
Q 003525 501 QETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQS 580 (813)
Q Consensus 501 ~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~ 580 (813)
.+.|.||+++++.|.++|+++++|||||||||||||++||++|++++.+|++|+|+++++||+|++|++++++|++|++.
T Consensus 447 q~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~ 526 (693)
T KOG0730|consen 447 QQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQV 526 (693)
T ss_pred HHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCC
Q 003525 581 APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPD 660 (813)
Q Consensus 581 ~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~ 660 (813)
+|||+||||||+++..|+++. +++.+||+++||++|||++..++|+||||||||+.||+|++||||||++||||+||
T Consensus 527 aP~IiFfDEiDsi~~~R~g~~---~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD 603 (693)
T KOG0730|consen 527 APCIIFFDEIDALAGSRGGSS---SGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPD 603 (693)
T ss_pred CCeEEehhhHHhHhhccCCCc---cchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCcc
Confidence 999999999999999997433 37899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCcccccccccccc
Q 003525 661 EASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERERRKMENPEAMEEDEVDDVD 740 (813)
Q Consensus 661 ~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (813)
.+.|++||+.+++++++.+++|++.||+.|+|||||||.++|++|++.|++++++. .
T Consensus 604 ~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a-----------------------~ 660 (693)
T KOG0730|consen 604 LEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEA-----------------------T 660 (693)
T ss_pred HHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhccc-----------------------c
Confidence 99999999999999999999999999999999999999999999999999998663 4
Q ss_pred cccHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 003525 741 EIKAVHFEESMKYARRSVSDADIRKYQLFAQT 772 (813)
Q Consensus 741 ~i~~~~f~~a~~~~~~s~~~~~~~~y~~~~~~ 772 (813)
.|+.+||++|++.+++|++.+++++|++|.+.
T Consensus 661 ~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 661 EITWQHFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred cccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 79999999999999999999999999999864
No 2
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-113 Score=920.81 Aligned_cols=556 Identities=49% Similarity=0.850 Sum_probs=510.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhhhh
Q 003525 210 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKL 289 (813)
Q Consensus 210 ~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~~~ 289 (813)
+.++|.+|||+++++.++.+++.. +.||+.|.++|+.|++|||||||||||||+||++||++++.+|+.|+++++++.+
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 467999999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccC----CcEEEEEecCCCCCCC
Q 003525 290 AGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSR----AHVIVMGATNRPNSID 365 (813)
Q Consensus 290 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~----~~vivi~atn~~~~ld 365 (813)
.|+++++++.+|..|....|||+||||||++.+++.....++++|++.||++.||++... ..|+|||+||+|+.+|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslD 343 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLD 343 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccC
Confidence 999999999999999999999999999999999999999999999999999999998754 5799999999999999
Q ss_pred HHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcccccc--
Q 003525 366 PALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDL-- 443 (813)
Q Consensus 366 ~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~-- 443 (813)
++|||.|||+++|.++.|++..|.+||+..++++.+..+.++..||..|+||+|+||.+||.+|+..+++|..+...-
T Consensus 344 paLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~ 423 (802)
T KOG0733|consen 344 PALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPL 423 (802)
T ss_pred HHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999886552220
Q ss_pred --------------cchh--hh---------------------------HHhhhhccccchhhhcccccCCCCccccccc
Q 003525 444 --------------EDET--ID---------------------------AEVLNSMAVTNEHFQTALGTSNPSALRETVV 480 (813)
Q Consensus 444 --------------~~~~--~~---------------------------~~~~~~~~v~~~d~~~al~~~~p~~~~~~~~ 480 (813)
+.+. +. .+....+.+..+||..|+..++|++.|+.+.
T Consensus 424 ~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~ 503 (802)
T KOG0733|consen 424 TKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFA 503 (802)
T ss_pred ccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccce
Confidence 0000 00 1223345688999999999999999999999
Q ss_pred ccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhh
Q 003525 481 EVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 560 (813)
Q Consensus 481 ~~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~ 560 (813)
.+|+++|+|||++++++.+|...|.||.++++.|+.+|+..|.|+||+||||||||+||||+|++.+.+|++|+|++|++
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCC
Q 003525 561 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII 640 (813)
Q Consensus 561 ~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l 640 (813)
|||||||+.||.+|++||..+||||||||+|+|+++|+... .....|++||||++|||++...+|+||+||||||.|
T Consensus 584 kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiI 660 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDII 660 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccccceEEEeecCCCccc
Confidence 99999999999999999999999999999999999998654 457899999999999999999999999999999999
Q ss_pred CccccCCCCcccccccCCCCHHHHHHHHHHHhc--cCCCCCcccHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHHH
Q 003525 641 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLR--KSPISPDVDLSALARYTH--GFSGADITEVCQRACKYAIRENIEK 716 (813)
Q Consensus 641 d~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~--~~~~~~~~d~~~la~~~~--g~sg~di~~l~~~a~~~a~~~~~~~ 716 (813)
|||+|||||||+.+||++|+.++|.+||+.+++ +.++++|+|++.||..+. |||||||..||++|...|+++.+..
T Consensus 661 DpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~ 740 (802)
T KOG0733|consen 661 DPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFE 740 (802)
T ss_pred chhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999 789999999999999887 9999999999999999999987652
Q ss_pred hHHHHHhhccCCcccccccccc-cccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhccCC
Q 003525 717 DIERERRKMENPEAMEEDEVDD-VDEIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGF 779 (813)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~f~~a~~~~~~s~~~~~~~~y~~~~~~~~~~~~~ 779 (813)
.. ...++..... ...+++.||++|++.++||+++.+.++|+...++++-+.+.
T Consensus 741 ~~----------~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~L~~~~ 794 (802)
T KOG0733|consen 741 ID----------SSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRSLSTAT 794 (802)
T ss_pred cc----------ccCcccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhcccccC
Confidence 11 0001111011 23589999999999999999999999999999998654443
No 3
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.3e-98 Score=899.59 Aligned_cols=722 Identities=51% Similarity=0.850 Sum_probs=635.4
Q ss_pred eEEEccccC-C-CCcEEEeCHHHHHhcCCCCCCEEEEe-cCCCceEEEEEEe--cCCCCCCeEEecHHHHhhccccCCCe
Q 003525 37 RLVVDEAIN-D-DNSVITMHPNTMEKLQFFRGDTVLVK-GKKRKDTVCVVLS--DELCEASKVRVNKVVRSNLRVRLGDV 111 (813)
Q Consensus 37 ~~~v~~~~~-~-~~~~v~l~~~~~~~l~~~~g~~v~i~-~~~~~~~~~~~~~--~~~~~~~~i~~~~~~r~~~~~~~g~~ 111 (813)
.++|.++.+ + +++.++|+|++|.+||+..||+|.|. |++ .+++.+|+ ..+.+.+.|++++.+|.|+|+++||.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (733)
T TIGR01243 3 ELRVAEAYPRDVGRGIVRIDRQTAARLGVEPGDFVEIEKGDR--SVVAIVWPLRPDDEGRGIIRMDGYLRANAGVTIGDT 80 (733)
T ss_pred EEEehhhhccCCCCCeEeeCHHHHHhcCCCCCCEEEEecCCC--ceeEEEEecCccccCCCEEeecHHHHhhcCCCCCCe
Confidence 367887755 3 89999999999999999999999999 544 46778886 34678899999999999999999999
Q ss_pred EEEEecCCCCCCcEEEecccCCcccCcchhhHHHHhhHhhhhcCcccccCcEEEEecCceeEEEEEEEecCCceeeeCCC
Q 003525 112 VSVHPCPDVKYGRRVHILPIDDTIEGVTGNLFDAYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPD 191 (813)
Q Consensus 112 v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~~~~~~~~~~~ 191 (813)
|+|+++. ++.+.+|.+.|..... .+..+..+++.++. .+++..|+.+.+......+.|+|+++.|.+++.++..
T Consensus 81 ~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~v~~~~p~~~~~~~~~ 154 (733)
T TIGR01243 81 VTVERAE-VKEAKKVVLAPTQPIR---FGRDFVDYVKEFLL--GKPISKGETVIVPVLEGALPFVVVSTQPAGFVYVTEA 154 (733)
T ss_pred EEEeecC-CCccceEeeccccccc---cccchHHHHHHHHc--CCCCCCCCEEEecccCcceeEEEEecCCCCcEEECCC
Confidence 9999964 7788999988864321 12334556777775 4789999998876444457899999999999999999
Q ss_pred ceEEecCCCCccccccccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHH
Q 003525 192 TEIFCEGEPVKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 271 (813)
Q Consensus 192 t~i~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~ 271 (813)
|.+.+...+.........++++|+||||++++++.|++++.+|+.+|++++++++.+++++||+||||||||+|++++|+
T Consensus 155 t~~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 155 TEVEIREKPVREEIERKVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred ceEEecCCccccccccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 99877654433222224578999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCc
Q 003525 272 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH 351 (813)
Q Consensus 272 ~l~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~ 351 (813)
+++..++.++++++.+.+.|+.+..++.+|+.+....|++|||||+|.++++++...++.+.++..+|+++|+++..+..
T Consensus 235 ~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 235 EAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred HhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 99999999999999999999999999999999999999999999999999988777778888999999999999988889
Q ss_pred EEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhHHHHhhcCCCchHHHHHHHHHHHH
Q 003525 352 VIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAAL 431 (813)
Q Consensus 352 vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~ 431 (813)
+++|++||+++.+|+++++++||++.++++.|+.++|.+||+.+.+.+.+..+.++..++..++||+++|+..++++|++
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~ 394 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAM 394 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888899999999999999999999999999
Q ss_pred HHHHhhcc--cccccchhhhHHhhhhccccchhhhcccccCCCCcccccccccCCcccccccccchhhhhhhccccCCCC
Q 003525 432 QCIREKMD--VIDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLDNVKRELQETVQYPVE 509 (813)
Q Consensus 432 ~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~p~~~~~~~~~~~~~~~~~i~g~~~~k~~L~~~i~~~~~ 509 (813)
.++++... ..+.....+.........++..+|..++..+.|+.+++...+.+.++|++|+|++.+|+.|.+.+.||+.
T Consensus 395 ~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~ 474 (733)
T TIGR01243 395 AALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLK 474 (733)
T ss_pred HHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHHHHHHHHhhhh
Confidence 88877543 2222222333334455678899999999999999999888889999999999999999999999999999
Q ss_pred ChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhhhcccccHHHHHHHHHHHHhCCCeEEEEec
Q 003525 510 HPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDE 589 (813)
Q Consensus 510 ~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~~p~il~iDE 589 (813)
+++.+.++++.+++|+|||||||||||++|+++|++++.+|+.+++++++++|+|+++++++.+|+.|+...||||||||
T Consensus 475 ~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDE 554 (733)
T TIGR01243 475 HPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDE 554 (733)
T ss_pred CHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHH
Q 003525 590 LDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFK 669 (813)
Q Consensus 590 id~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~ 669 (813)
||++++.|+.... ....++++++||++||++...++++||+|||+|+.||+|++||||||++|+||+||.++|.+||+
T Consensus 555 id~l~~~r~~~~~--~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~ 632 (733)
T TIGR01243 555 IDAIAPARGARFD--TSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFK 632 (733)
T ss_pred hhhhhccCCCCCC--ccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHH
Confidence 9999998865322 34678999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCcccccccccccccccHHHHHH
Q 003525 670 ACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERERRKMENPEAMEEDEVDDVDEIKAVHFEE 749 (813)
Q Consensus 670 ~~l~~~~~~~~~d~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~ 749 (813)
.++++.++..++|++.||+.|+||||+||.++|++|++.|+++.+....... . .. ..........|+++||++
T Consensus 633 ~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~---~---~~-~~~~~~~~~~i~~~~f~~ 705 (733)
T TIGR01243 633 IHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEK---L---EV-GEEEFLKDLKVEMRHFLE 705 (733)
T ss_pred HHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchh---h---hc-ccccccccCcccHHHHHH
Confidence 9999999999999999999999999999999999999999998755321000 0 00 000011234799999999
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHHhh
Q 003525 750 SMKYARRSVSDADIRKYQLFAQTLQQ 775 (813)
Q Consensus 750 a~~~~~~s~~~~~~~~y~~~~~~~~~ 775 (813)
|+++++||++++++++|++|.++|+.
T Consensus 706 al~~~~ps~~~~~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 706 ALKKVKPSVSKEDMLRYERLAKELKR 731 (733)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999964
No 4
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-84 Score=715.72 Aligned_cols=614 Identities=36% Similarity=0.597 Sum_probs=492.8
Q ss_pred hhhHHHHhhHhhhhcCcccccCcEEEEecC------------------ceeEEEEEEEecCC---ceeeeCCCceEEecC
Q 003525 140 GNLFDAYLKPYFMESYRPVRKGDLFLVRGG------------------MRSVEFKVIETDPG---EYCVVAPDTEIFCEG 198 (813)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~------------------~~~~~f~v~~~~~~---~~~~~~~~t~i~~~~ 198 (813)
.+.....++.||+ ..|.++.||+|++... ...++|+|++.+|. .+++..++|.++..+
T Consensus 303 ~~~~~~~l~~~f~-t~ril~~gdvf~i~~~~~~~~~~~~~~l~l~~~~d~~v~~~v~~~ep~~~~~~~i~~~~T~lv~~~ 381 (953)
T KOG0736|consen 303 AGNIDVVLKKHFK-TPRILQSGDVFCIPINSQMANLNGYPELPLWRETDFLVYKKVIEAEPGNESAYIIDTNHTSLVLVG 381 (953)
T ss_pred hhHHHHHHHHHhC-cceeeecCCEEEEeehhhhcccccchhhHhhhhccceeEEEEeecCCCccceEEEcCCCceEEEcc
Confidence 3456668899997 6788999999987321 23678999999885 356667788887765
Q ss_pred CCCccc--c-ccccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCC
Q 003525 199 EPVKRE--D-EERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA 275 (813)
Q Consensus 199 ~~~~~~--~-~~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~ 275 (813)
....+. . .....-..+-..-+.+..+..+..++.-+ ..| ...++.-...+||+|+|||||||+++++|.+++.
T Consensus 382 ~~ss~~~~lps~~~~l~n~~~~~~~~~~~~~l~~vl~p~-~~~---s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~ 457 (953)
T KOG0736|consen 382 ATSSRVPLLPSSLSTLWNSLSPPGLEAKVLELVAVLSPQ-KQP---SGALLTLNPSVLLHGPPGSGKTTVVRAVASELGL 457 (953)
T ss_pred ccccCCcCCChhhHHHhccCCCccchHHHHHHHHHhCcc-cCc---chhccccceEEEEeCCCCCChHHHHHHHHHHhCC
Confidence 433220 0 00000012223344444444444443321 111 1122334557999999999999999999999999
Q ss_pred eEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhh---ccccCCcE
Q 003525 276 FFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMD---GLKSRAHV 352 (813)
Q Consensus 276 ~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld---~~~~~~~v 352 (813)
+++.++|.++.+...+..+.++...|+.++...|+|||+-++|.+.-+... ..+.++.+.+..++. .......+
T Consensus 458 h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg---ged~rl~~~i~~~ls~e~~~~~~~~~ 534 (953)
T KOG0736|consen 458 HLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG---GEDARLLKVIRHLLSNEDFKFSCPPV 534 (953)
T ss_pred ceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC---chhHHHHHHHHHHHhcccccCCCCce
Confidence 999999999999999999999999999999999999999999998855433 333455554444443 33356789
Q ss_pred EEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhHHHHhhcCCCchHHHHHHHHHHHHH
Q 003525 353 IVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQ 432 (813)
Q Consensus 353 ivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~ 432 (813)
+++++++..+.+++.+++ -|.++|.++.|++++|.+||+.++....+..++.+..++.++.||+.+++.++.......
T Consensus 535 ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~ 612 (953)
T KOG0736|consen 535 IVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLA 612 (953)
T ss_pred EEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHH
Confidence 999999999999999998 567799999999999999999999999999999999999999999999999998776433
Q ss_pred HHHhhcccc---cccchhhhHHhhhhccccchhhhcccccCCCCcccc-cccccCCcccccccccchhhhhhhccccCCC
Q 003525 433 CIREKMDVI---DLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALRE-TVVEVPNVSWEDIGGLDNVKRELQETVQYPV 508 (813)
Q Consensus 433 ~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~d~~~al~~~~p~~~~~-~~~~~~~~~~~~i~g~~~~k~~L~~~i~~~~ 508 (813)
+..+..... .+.+..-.........++++||.+++...+...... ....+|+++|+||||++++|.++.+.|..|+
T Consensus 613 ~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL 692 (953)
T KOG0736|consen 613 AKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPL 692 (953)
T ss_pred HHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHhcCcc
Confidence 322211100 000000011122346788999999988665432222 2346899999999999999999999999999
Q ss_pred CChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhhhcccccHHHHHHHHHHHHhCCCeEEEEe
Q 003525 509 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFD 588 (813)
Q Consensus 509 ~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~~p~il~iD 588 (813)
+|+++|.. |+++..|||||||||||||++|||+|.++..+|++|+|+||++||+|+||+++|+||++||..+|||||||
T Consensus 693 ~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFD 771 (953)
T KOG0736|consen 693 KHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFD 771 (953)
T ss_pred cChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEec
Confidence 99999987 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhccCCCCCCCCchHHHHHHHHHHHHhccC--CCCcEEEEeccCCCCCCCccccCCCCcccccccCCC-CHHHHH
Q 003525 589 ELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN--AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP-DEASRL 665 (813)
Q Consensus 589 Eid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~--~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p-~~~~r~ 665 (813)
|+|+++++||.+ ++++++++||++|||.||||+. ..+.|+|||||||||.||||||||||||+.+|++++ |.+.+.
T Consensus 772 ELDSlAP~RG~s-GDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~ 850 (953)
T KOG0736|consen 772 ELDSLAPNRGRS-GDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKL 850 (953)
T ss_pred cccccCccCCCC-CCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHH
Confidence 999999999986 4568899999999999999997 567999999999999999999999999999999977 568899
Q ss_pred HHHHHHhccCCCCCcccHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCcccc-ccccccccccc
Q 003525 666 QIFKACLRKSPISPDVDLSALARYT-HGFSGADITEVCQRACKYAIRENIEKDIERERRKMENPEAME-EDEVDDVDEIK 743 (813)
Q Consensus 666 ~Il~~~l~~~~~~~~~d~~~la~~~-~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~ 743 (813)
.||+...+++.++.++|+.++|+.. ..|||||+..+|..|.+.|++|.+...... .+. ++.......|+
T Consensus 851 ~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g---------~~~~~e~~~~~v~V~ 921 (953)
T KOG0736|consen 851 RVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESG---------TISEEEQESSSVRVT 921 (953)
T ss_pred HHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhc---------cccccccCCceEEEE
Confidence 9999999999999999999999875 689999999999999999999976543210 001 11223456799
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHh
Q 003525 744 AVHFEESMKYARRSVSDADIRKYQLFAQTLQ 774 (813)
Q Consensus 744 ~~~f~~a~~~~~~s~~~~~~~~y~~~~~~~~ 774 (813)
++||.++++++.||++..++.+|+..+.+|.
T Consensus 922 ~eDflks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 922 MEDFLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999985
No 5
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-72 Score=612.47 Aligned_cols=499 Identities=37% Similarity=0.568 Sum_probs=426.2
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHhC----CeEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccC
Q 003525 247 KPPKGILLYGPPGSGKTLIARAVANETG----AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAP 322 (813)
Q Consensus 247 ~~~~~vLL~GppGsGKTtLar~la~~l~----~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~ 322 (813)
..+.+|||+||+|||||.|+++++.++. .++..++|+.+-........+.++.+|..+.+..|+|+++|++|.|+.
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~ 508 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLAS 508 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhc
Confidence 3457799999999999999999999874 456889999988777777788899999999999999999999999987
Q ss_pred CCC---CCchhHHHHHHHHHHHHhhccccC-CcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcC
Q 003525 323 KRE---KTHGEVERRIVSQLLTLMDGLKSR-AHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKN 398 (813)
Q Consensus 323 ~~~---~~~~~~~~~v~~~Ll~~ld~~~~~-~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~ 398 (813)
..+ ...+....++...|......+..+ ..+.+|++.+....+++.|..+++|+..+.++.|+..+|.+||...+.+
T Consensus 509 ~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~ 588 (952)
T KOG0735|consen 509 ASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSK 588 (952)
T ss_pred cCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHh
Confidence 322 223344555555554555544443 4578999999999999999999999999999999999999999987765
Q ss_pred Cc-cccchhhHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcccccccchhhhHHhhhhccccchhhhcccccCCCCcccc
Q 003525 399 MK-LAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALRE 477 (813)
Q Consensus 399 ~~-l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~p~~~~~ 477 (813)
.. .....+++.++..|+||...|+..++.+|...++...... ....++.++|.++|+.+.|..+|.
T Consensus 589 ~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~-------------~~klltke~f~ksL~~F~P~aLR~ 655 (952)
T KOG0735|consen 589 NLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISN-------------GPKLLTKELFEKSLKDFVPLALRG 655 (952)
T ss_pred hhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcc-------------CcccchHHHHHHHHHhcChHHhhh
Confidence 43 1223356669999999999999999999988776433211 122688899999999999999998
Q ss_pred ccccc-CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEecc
Q 003525 478 TVVEV-PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 556 (813)
Q Consensus 478 ~~~~~-~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~ 556 (813)
..... .++.|+||||+.++|+.|.+.+.||.+++.+|...+++.+.|+|||||||||||+||.++|..++..||+|+|+
T Consensus 656 ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGP 735 (952)
T KOG0735|consen 656 IKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGP 735 (952)
T ss_pred ccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCH
Confidence 76544 45999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCC
Q 003525 557 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR 636 (813)
Q Consensus 557 ~l~~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~ 636 (813)
+++++|+|.||+++|.+|.+|+...|||+||||+|+++++||.+ ..+.++||+||||++|||.++.++|+|+|||.|
T Consensus 736 ElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD---sTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsR 812 (952)
T KOG0735|consen 736 ELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD---STGVTDRVVNQLLTELDGAEGLDGVYILAATSR 812 (952)
T ss_pred HHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC---CCCchHHHHHHHHHhhccccccceEEEEEecCC
Confidence 99999999999999999999999999999999999999999864 367899999999999999999999999999999
Q ss_pred CCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 003525 637 PDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEK 716 (813)
Q Consensus 637 ~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~ 716 (813)
||+||||||||||+|+.+|+|+|+..+|.+|++.......++.++|++.+|..|+|||||||..++..|.+.|+++.+.+
T Consensus 813 pdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~ 892 (952)
T KOG0735|consen 813 PDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKR 892 (952)
T ss_pred ccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988665
Q ss_pred hHHHHHhhccCCcccccccccccccccHHHHHHHH--hhccCCCCHHHHHHHHHHHHHHhhcc
Q 003525 717 DIERERRKMENPEAMEEDEVDDVDEIKAVHFEESM--KYARRSVSDADIRKYQLFAQTLQQSR 777 (813)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~--~~~~~s~~~~~~~~y~~~~~~~~~~~ 777 (813)
... .+..+.++...+.-.. .+.+||.+.-+-+.|.+.+.+|..++
T Consensus 893 ~~~----------------~~~~p~~~~~~~~si~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 939 (952)
T KOG0735|consen 893 EDE----------------EGVVPSIDDASLESIFSDSKRKPSRSALDNRKGQDVYSQFLSDE 939 (952)
T ss_pred cCc----------------cccCCccchhhhhhhhhccCCCccccccchhhhhhHHHhhcCcc
Confidence 310 0112223333333333 36688888888888888777776544
No 6
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-66 Score=596.72 Aligned_cols=489 Identities=56% Similarity=0.912 Sum_probs=450.7
Q ss_pred cccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCcEE
Q 003525 233 LPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSII 312 (813)
Q Consensus 233 ~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il 312 (813)
+|+.+++.++.+++.++.+++++||||+|||+++++++.. +..+..++++++.+++.++.+..++.+|..+....|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 5788999999999999999999999999999999999999 665688999999999999999999999999999999999
Q ss_pred EeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHH
Q 003525 313 FIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEIL 392 (813)
Q Consensus 313 ~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il 392 (813)
++||++.+++.+.........+++.+++..++++. +..+++++.+|.+..+++++++++||+.++.+..|+...+.+|+
T Consensus 81 ~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~ 159 (494)
T COG0464 81 FIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEIL 159 (494)
T ss_pred eechhhhcccCccccccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHH
Confidence 99999999999887667788999999999999999 55588889999999999999999999999999999999999999
Q ss_pred HHHhcCCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcccccccchhhhHHhhhhccccchhhhcccccCCC
Q 003525 393 RIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGTSNP 472 (813)
Q Consensus 393 ~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~p 472 (813)
..+...+....+.+...++..++||.++++..+++++.+...++.. ........++.+++..++..+.|
T Consensus 160 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~-----------~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 160 QIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI-----------DLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh-----------ccCcccccccHHHHHHHHHhcCc
Confidence 9999998888888999999999999999999999999888877642 01123455778888899988888
Q ss_pred CcccccccccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEE
Q 003525 473 SALRETVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFIS 552 (813)
Q Consensus 473 ~~~~~~~~~~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~ 552 (813)
+ +......+.++|+++||++.+|+.+++.+.+++.+++.|.+.++.+++|+|||||||||||+||+++|.+++.+|+.
T Consensus 229 ~--~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~ 306 (494)
T COG0464 229 S--RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFIS 306 (494)
T ss_pred c--cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEE
Confidence 7 66777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccchhhhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEe
Q 003525 553 VKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIG 632 (813)
Q Consensus 553 v~~~~l~~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~ 632 (813)
+++++++++|+|+++++|+.+|..|++..||||||||+|++++.|+.+.. +...|++++||.+|++++...+|+||+
T Consensus 307 v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~---~~~~r~~~~lL~~~d~~e~~~~v~vi~ 383 (494)
T COG0464 307 VKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSED---GSGRRVVGQLLTELDGIEKAEGVLVIA 383 (494)
T ss_pred eeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCc---hHHHHHHHHHHHHhcCCCccCceEEEe
Confidence 99999999999999999999999999999999999999999999976432 234799999999999999999999999
Q ss_pred ccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCC--CCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 003525 633 ATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSP--ISPDVDLSALARYTHGFSGADITEVCQRACKYAI 710 (813)
Q Consensus 633 aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~--~~~~~d~~~la~~~~g~sg~di~~l~~~a~~~a~ 710 (813)
|||+|+.||+|++||||||.+|+||+||.++|.+||+.+++... +..++++..+++.|+||||+||..+|++|++.++
T Consensus 384 aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~ 463 (494)
T COG0464 384 ATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEAL 463 (494)
T ss_pred cCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998554 4688999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHhhccCCcccccccccccccccHHHHHHHHhhccCCCCHHHHHHHHHH
Q 003525 711 RENIEKDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARRSVSDADIRKYQLF 769 (813)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~~~~~~~~y~~~ 769 (813)
++.. ...++.+||.+|+++++|+++ |++|
T Consensus 464 ~~~~------------------------~~~~~~~~~~~a~~~~~p~~~------~~~~ 492 (494)
T COG0464 464 REAR------------------------RREVTLDDFLDALKKIKPSVT------YEEW 492 (494)
T ss_pred HHhc------------------------cCCccHHHHHHHHHhcCCCCC------hhhc
Confidence 8764 137999999999999999999 7777
No 7
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-58 Score=487.69 Aligned_cols=601 Identities=28% Similarity=0.434 Sum_probs=444.7
Q ss_pred EEEccccCC---CCcEEEeCHHHHHhcCCCCCCEEEEecCCCceEEEEEEecCCCCCCeEEecHHHHhhccccCCCeEEE
Q 003525 38 LVVDEAIND---DNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVLSDELCEASKVRVNKVVRSNLRVRLGDVVSV 114 (813)
Q Consensus 38 ~~v~~~~~~---~~~~v~l~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~g~~v~v 114 (813)
+.|..+... -.+.++++|+..++-+ +..+... ..++.......+.+|.|.++..+|+|+++++||.|.|
T Consensus 11 ~~v~k~ps~e~altn~a~v~~~DF~~~~-----~~~vd~~---~~~Fs~~~~~~i~~g~i~fs~~qR~wa~~Sl~qev~V 82 (744)
T KOG0741|consen 11 FQVTKCPSNELALTNCAYVSPSDFRQFQ-----VIIVDNF---HYVFSTEFTPSIPPGNIGFSLPQRKWAGWSLGQEVEV 82 (744)
T ss_pred eeeecCCchhhhccCcceeCccccccce-----eeEEeee---eEEEEeeccCCCCCceeccchhhhhhhhcccCceeEE
Confidence 555555332 3567888888775432 2223221 2455666677899999999999999999999999999
Q ss_pred EecCCCCC---CcEEEec----ccC-CcccCcchh-hHHHHhhHhhhhcCcccccCcEEEEecC-ceeEEEEEEEec---
Q 003525 115 HPCPDVKY---GRRVHIL----PID-DTIEGVTGN-LFDAYLKPYFMESYRPVRKGDLFLVRGG-MRSVEFKVIETD--- 181 (813)
Q Consensus 115 ~~~~~~~~---~~~v~~~----~~~-~~~~~~~~~-~~~~~l~~~~~~~~~~v~~g~~~~~~~~-~~~~~f~v~~~~--- 181 (813)
.++..... ...+++. ... .+...++.+ +..++...|- ..++++|+.+.+... ...+.++|.+++
T Consensus 83 ~~~~~~~~~~~l~~m~le~dF~~k~~~~sep~Dad~ma~qF~~~y~---~q~fsvgQ~~~f~f~~~~~l~l~v~~ie~~D 159 (744)
T KOG0741|consen 83 KPFTFDGSCDYLGSMTLEIDFLNKKNTTSEPFDADEMAKQFKRQYN---SQAFSVGQQLVFEFNGNKLLGLKVKDIEAFD 159 (744)
T ss_pred EecccCcccccceeEEEEehhhhcCCCCCCCCCHHHHHHHHHHHhc---CcccCCccEEEEEecCceEeeeEEEEEeeec
Confidence 98642222 2222221 111 111223332 3344444443 356889998776544 355667776654
Q ss_pred C--------------CceeeeCCCceEEecCCCCc----------cccccc--cCCCCcc--cccChHHHHHHH-HHHHH
Q 003525 182 P--------------GEYCVVAPDTEIFCEGEPVK----------REDEER--LNEVGYD--DVGGVRKQMAQI-RELVE 232 (813)
Q Consensus 182 ~--------------~~~~~~~~~t~i~~~~~~~~----------~~~~~~--~~~~~~~--~i~G~~~~~~~i-~~~v~ 232 (813)
| ..++++..+|.|.+..+... +..... -++..|+ .|||+++++..| |+++.
T Consensus 160 ~~~~~~~~a~~~~~~~~~G~l~~nT~i~F~k~~~s~lnL~~~~~~k~~~n~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFA 239 (744)
T KOG0741|consen 160 PGISEGESAVTKRQKIERGLLLGNTQIVFEKAENSSLNLIGKSKTKPASNSIINPDFNFESMGIGGLDKEFSDIFRRAFA 239 (744)
T ss_pred cccccCCcccccccceeeeEeecCcEEEEEeccCcceEeeccccccchhccccCCCCChhhcccccchHHHHHHHHHHHH
Confidence 2 13578888998855322111 111111 1344454 389999999887 88999
Q ss_pred cccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe-EEEEechhhhhhhcchhHHHHHHHHHHHHhc----
Q 003525 233 LPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-FFLINGPEIMSKLAGESESNLRKAFEEAEKN---- 307 (813)
Q Consensus 233 ~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~-~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~---- 307 (813)
.....|++.+++|+.+-+|+|||||||||||.+||.|...+++. ...|||++++++|+|++++++|.+|.+|++.
T Consensus 240 sRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~ 319 (744)
T KOG0741|consen 240 SRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRL 319 (744)
T ss_pred hhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhh
Confidence 88999999999999999999999999999999999999999864 5789999999999999999999999998763
Q ss_pred ----CCcEEEeccchhccCCCCCCc--hhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcC
Q 003525 308 ----APSIIFIDELDSIAPKREKTH--GEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIG 381 (813)
Q Consensus 308 ----~p~il~iDEid~l~~~~~~~~--~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~ 381 (813)
.-.||++||||++|.+|+... ..+...+++||++.|||..+-.+++|||.||+.+.||++|.|||||...+++.
T Consensus 320 g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIs 399 (744)
T KOG0741|consen 320 GANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEIS 399 (744)
T ss_pred CccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEe
Confidence 346999999999999998644 35788999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCc----cccchhhHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcccccccchhhhHHhhhhcc
Q 003525 382 VPDEVGRLEILRIHTKNMK----LAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMA 457 (813)
Q Consensus 382 ~p~~~~R~~Il~~~~~~~~----l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (813)
.||+..|++||++|+++|. +..++|+.++|..|.+|+|++|..+++.|...++.+..... .....+......+.
T Consensus 400 LPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~--~~~~~~~~~~e~lk 477 (744)
T KOG0741|consen 400 LPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAG--GKVEVDPVAIENLK 477 (744)
T ss_pred CCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccC--cceecCchhhhhee
Confidence 9999999999999998874 67899999999999999999999999999988887765433 12334455567889
Q ss_pred ccchhhhcccccCCCCcccc-----cccccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCC
Q 003525 458 VTNEHFQTALGTSNPSALRE-----TVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPG 532 (813)
Q Consensus 458 v~~~d~~~al~~~~p~~~~~-----~~~~~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppG 532 (813)
+++.||..||..+.|+.-.. ..+...-+.|..- +-+.| ..........+.....+...+||+||||
T Consensus 478 V~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~-----v~~il----~~G~llv~qvk~s~~s~lvSvLl~Gp~~ 548 (744)
T KOG0741|consen 478 VTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPP-----VTRIL----DDGKLLVQQVKNSERSPLVSVLLEGPPG 548 (744)
T ss_pred ecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeeccc-----HHHHH----hhHHHHHHHhhccccCcceEEEEecCCC
Confidence 99999999999998875321 1112223444321 11111 1111111122233445556799999999
Q ss_pred CChhHHHHHHHHHhCCeEEEEeccchhhhcccccH----HHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchH
Q 003525 533 CGKTLLAKAIANECQANFISVKGPELLTMWFGESE----ANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAA 608 (813)
Q Consensus 533 tGKT~la~ala~~~~~~~i~v~~~~l~~~~vg~se----~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~ 608 (813)
+|||+||..+|..+.+||+.+-.++-+ +|-+| ..+.++|+.|+++.-+||++|+|+.|...-.- .....
T Consensus 549 sGKTaLAA~iA~~S~FPFvKiiSpe~m---iG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpI----GPRfS 621 (744)
T KOG0741|consen 549 SGKTALAAKIALSSDFPFVKIISPEDM---IGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPI----GPRFS 621 (744)
T ss_pred CChHHHHHHHHhhcCCCeEEEeChHHc---cCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccccc----Cchhh
Confidence 999999999999999999998777643 45444 37999999999999999999999999875321 13456
Q ss_pred HHHHHHHHHHHhccCC-CCcEEEEeccCCCCCCCc-cccCCCCcccccccCCCCH-HHHHHHHH
Q 003525 609 DRVLNQLLTEMDGMNA-KKTVFIIGATNRPDIIDP-ALLRPGRLDQLIYIPLPDE-ASRLQIFK 669 (813)
Q Consensus 609 ~~vl~~lL~~ld~~~~-~~~v~vi~aTn~~~~ld~-allr~gRf~~~i~~~~p~~-~~r~~Il~ 669 (813)
+.+++.|+-.+...++ .++++|++||.+.+.|.. .++. .|+..+++|.... ++..++++
T Consensus 622 N~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 622 NLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred HHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHH
Confidence 6777777777776654 458999999999888865 5555 8999999997654 55455544
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-59 Score=480.02 Aligned_cols=253 Identities=48% Similarity=0.827 Sum_probs=243.3
Q ss_pred ccccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccch
Q 003525 479 VVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 558 (813)
Q Consensus 479 ~~~~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l 558 (813)
..+.|+++++||||+++..++|+|.|..|+++|++|..+|+.||+|+|||||||||||+||||+|++.+++|+.+.|++|
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCC
Q 003525 559 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD 638 (813)
Q Consensus 559 ~~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~ 638 (813)
..+|+|+..+.+|++|+.|+..+||||||||||+++.+|-+++.+.+....|.+-+||++|||+...++|=||+||||++
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D 301 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPD 301 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc
Confidence 99999999999999999999999999999999999999988776777778899999999999999999999999999999
Q ss_pred CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhH
Q 003525 639 IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDI 718 (813)
Q Consensus 639 ~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~ 718 (813)
.||||||||||||+.|+||+||.+.|.+||+.|.+++.+..++|++.||+.++|+|||||+++|.+|.+.|+++.
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~----- 376 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER----- 376 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred HHHHhhccCCcccccccccccccccHHHHHHHHhhccC
Q 003525 719 ERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARR 756 (813)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~ 756 (813)
...||++||.+|.+++-.
T Consensus 377 --------------------R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 377 --------------------RDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred --------------------cCeecHHHHHHHHHHHHh
Confidence 237999999999988743
No 9
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-54 Score=445.13 Aligned_cols=285 Identities=43% Similarity=0.691 Sum_probs=257.9
Q ss_pred cccccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccc
Q 003525 478 TVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 557 (813)
Q Consensus 478 ~~~~~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~ 557 (813)
.+...|+++|+||.|+.++|+-|+|.|..|+..|+.|+. .++|.+|+|++||||||||+||||+|.+|+..|+.|+.+.
T Consensus 202 Il~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsst 280 (491)
T KOG0738|consen 202 ILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSST 280 (491)
T ss_pred HhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhh
Confidence 345678999999999999999999999999999999987 5678899999999999999999999999999999999999
Q ss_pred hhhhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCC----CCcEEEEec
Q 003525 558 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNA----KKTVFIIGA 633 (813)
Q Consensus 558 l~~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~----~~~v~vi~a 633 (813)
+.++|-|+||+.||-+|+.|+..+|++|||||||+|+.+||.++ ..++.+|+.++||.+|||+.. .+.|+|++|
T Consensus 281 ltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~--EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAA 358 (491)
T KOG0738|consen 281 LTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSS--EHEASRRVKSELLVQMDGVQGTLENSKVVMVLAA 358 (491)
T ss_pred hhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCcc--chhHHHHHHHHHHHHhhccccccccceeEEEEec
Confidence 99999999999999999999999999999999999999998763 357889999999999999864 245999999
Q ss_pred cCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Q 003525 634 TNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIREN 713 (813)
Q Consensus 634 Tn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~l~~~a~~~a~~~~ 713 (813)
||.||.||+||+| ||.+.||+|+||.+.|..+|+..++..+++++++++.|++.++||||+||.++|++|.+.++++.
T Consensus 359 TN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~ 436 (491)
T KOG0738|consen 359 TNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRK 436 (491)
T ss_pred cCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHhHHHHHhhccCCcccccccccccccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhh
Q 003525 714 IEKDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQ 775 (813)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~~~~~~~~y~~~~~~~~~ 775 (813)
+........+.. ..++. ..+++.+||++|+++++||++..++++|++|-+.|++
T Consensus 437 i~g~~~~ei~~l------akE~~--~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 437 IAGLTPREIRQL------AKEEP--KMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFGS 490 (491)
T ss_pred HhcCCcHHhhhh------hhhcc--ccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhcC
Confidence 654322111111 11111 2579999999999999999999999999999999875
No 10
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-49 Score=406.10 Aligned_cols=247 Identities=51% Similarity=0.853 Sum_probs=230.2
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhh
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM 286 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~ 286 (813)
++.++++|+||||+++|+++|+|.+++|+.+|++|+.+||.||+|||||||||||||+|||++|++.++.|+.+.|+++.
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchh---HHHHHHHHHHHHhhccccCCcEEEEEecCCCCC
Q 003525 287 SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGE---VERRIVSQLLTLMDGLKSRAHVIVMGATNRPNS 363 (813)
Q Consensus 287 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~---~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ 363 (813)
.+|.|+....+|.+|+-|+.+.||||||||||++..++-..... --+|..-+|++.|||+..+.+|-||++||+++.
T Consensus 223 qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~ 302 (406)
T COG1222 223 QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDI 302 (406)
T ss_pred HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccc
Confidence 99999999999999999999999999999999999887543221 224555678899999999999999999999999
Q ss_pred CCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcccccc
Q 003525 364 IDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDL 443 (813)
Q Consensus 364 ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 443 (813)
|||+|.||||||+.|+||.|+.+.|.+||++|+++|.+.++++++.++..++|++|+|++++|.+|.+.+++..
T Consensus 303 LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~------ 376 (406)
T COG1222 303 LDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER------ 376 (406)
T ss_pred cChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred cchhhhHHhhhhccccchhhhcccccC
Q 003525 444 EDETIDAEVLNSMAVTNEHFQTALGTS 470 (813)
Q Consensus 444 ~~~~~~~~~~~~~~v~~~d~~~al~~~ 470 (813)
...++++||.+|...+
T Consensus 377 -----------R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 377 -----------RDEVTMEDFLKAVEKV 392 (406)
T ss_pred -----------cCeecHHHHHHHHHHH
Confidence 3457889998887655
No 11
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-48 Score=381.92 Aligned_cols=249 Identities=44% Similarity=0.751 Sum_probs=239.7
Q ss_pred ccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhh
Q 003525 481 EVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 560 (813)
Q Consensus 481 ~~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~ 560 (813)
+.|++++.||||++-.|+++++.+..|+.+.++++..|+.||+|+|+|||||||||+|++++|+.....|+.+.|+++..
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCC
Q 003525 561 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII 640 (813)
Q Consensus 561 ~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l 640 (813)
+|.|+..+.++.+|..|+..+|+||||||||+++.+|-+...+.+....|++-+||++|||+....+|-||++|||.+.|
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtl 307 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTL 307 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccccc
Confidence 99999999999999999999999999999999999998777777778889999999999999999999999999999999
Q ss_pred CccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003525 641 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIER 720 (813)
Q Consensus 641 d~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~ 720 (813)
||||+||||+|+.|+||+||..+++-+|.....++.+.+++|++.+....+..||+||..+|++|.+.|++++
T Consensus 308 dpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n------- 380 (408)
T KOG0727|consen 308 DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN------- 380 (408)
T ss_pred CHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred HHhhccCCcccccccccccccccHHHHHHHHhhc
Q 003525 721 ERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYA 754 (813)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~ 754 (813)
...|...||+++.+..
T Consensus 381 ------------------ryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 381 ------------------RYVVLQKDFEKAYKTV 396 (408)
T ss_pred ------------------ceeeeHHHHHHHHHhh
Confidence 3478999999999874
No 12
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-49 Score=393.29 Aligned_cols=293 Identities=34% Similarity=0.624 Sum_probs=258.1
Q ss_pred cccccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccc
Q 003525 478 TVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 557 (813)
Q Consensus 478 ~~~~~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~ 557 (813)
.+.+.|++.|+|+.|++..|+.|++.+..|++.|.+|.. +..|.+|+|||||||||||.||+|+|.+.+..|++|+.++
T Consensus 123 Iv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSD 201 (439)
T KOG0739|consen 123 IVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 201 (439)
T ss_pred hhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHH
Confidence 456789999999999999999999999999999999987 6778899999999999999999999999999999999999
Q ss_pred hhhhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccC-CCCcEEEEeccCC
Q 003525 558 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-AKKTVFIIGATNR 636 (813)
Q Consensus 558 l~~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-~~~~v~vi~aTn~ 636 (813)
|+++|.|+||+.++.+|+.||...|+||||||||++++.|+.+. ++..+|+..+||.+|.|+. ..++|+|++|||-
T Consensus 202 LvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enE---seasRRIKTEfLVQMqGVG~d~~gvLVLgATNi 278 (439)
T KOG0739|consen 202 LVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENE---SEASRRIKTEFLVQMQGVGNDNDGVLVLGATNI 278 (439)
T ss_pred HHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCc---hHHHHHHHHHHHHhhhccccCCCceEEEecCCC
Confidence 99999999999999999999999999999999999999886543 4578999999999999985 4678999999999
Q ss_pred CCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCC-CCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 003525 637 PDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPI-SPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIE 715 (813)
Q Consensus 637 ~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~-~~~~d~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~ 715 (813)
||.||.|+.| ||+++||+|+|+...|..+|+.++...+- -.+.|+..|++.|+||||+||.-+++.|.+..+++...
T Consensus 279 Pw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqs 356 (439)
T KOG0739|consen 279 PWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQS 356 (439)
T ss_pred chhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhh
Confidence 9999999999 99999999999999999999999987753 35678999999999999999999999999999998877
Q ss_pred HhHHHHHhhccCCc---------ccccc------------cccccccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHh
Q 003525 716 KDIERERRKMENPE---------AMEED------------EVDDVDEIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQ 774 (813)
Q Consensus 716 ~~~~~~~~~~~~~~---------~~~~~------------~~~~~~~i~~~~f~~a~~~~~~s~~~~~~~~y~~~~~~~~ 774 (813)
..+......-.+.. ...+. +.--.++||+.||..++..++|.++..++.+.++|.+.|+
T Consensus 357 AthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFG 436 (439)
T KOG0739|consen 357 ATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFG 436 (439)
T ss_pred hhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhc
Confidence 66543322211100 00000 0112568999999999999999999999999999999998
Q ss_pred hc
Q 003525 775 QS 776 (813)
Q Consensus 775 ~~ 776 (813)
+.
T Consensus 437 qE 438 (439)
T KOG0739|consen 437 QE 438 (439)
T ss_pred cC
Confidence 64
No 13
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-47 Score=374.28 Aligned_cols=254 Identities=43% Similarity=0.736 Sum_probs=240.5
Q ss_pred ccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhh
Q 003525 481 EVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 560 (813)
Q Consensus 481 ~~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~ 560 (813)
.+|+-+++-+||++...+++++.+..|.++|++|..+|+..|+|+|||||||+|||+||+++|+...+.|+.++|+++..
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCC
Q 003525 561 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII 640 (813)
Q Consensus 561 ~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l 640 (813)
+|+|+..+.++++|-.|+..+|+|||.||||++...|..++++.+....|.+-+||+++||++..+++-||+||||.+.|
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridil 299 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 299 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccc
Confidence 99999999999999999999999999999999999997766666667788999999999999999999999999999999
Q ss_pred CccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003525 641 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIER 720 (813)
Q Consensus 641 d~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~ 720 (813)
||||+||||+|+.|+||+|+.+.|.+|++.+.+++++...+++..+|+...|.|||+++.+|.+|.++|+++.
T Consensus 300 d~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer------- 372 (404)
T KOG0728|consen 300 DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER------- 372 (404)
T ss_pred cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred HHhhccCCcccccccccccccccHHHHHHHHhhccCCCC
Q 003525 721 ERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARRSVS 759 (813)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~~ 759 (813)
...+|++||+-|..++-..-+
T Consensus 373 ------------------rvhvtqedfemav~kvm~k~~ 393 (404)
T KOG0728|consen 373 ------------------RVHVTQEDFEMAVAKVMQKDS 393 (404)
T ss_pred ------------------hccccHHHHHHHHHHHHhccc
Confidence 237999999999988744333
No 14
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-47 Score=406.24 Aligned_cols=244 Identities=41% Similarity=0.714 Sum_probs=229.8
Q ss_pred cCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhhh
Q 003525 482 VPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 561 (813)
Q Consensus 482 ~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~~ 561 (813)
..+++|+|+-|.++.|++|.|.+.+ ++.|..|.++|-+.|+||||+||||||||+||||+|++.+.||++..|+++-.+
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 4578999999999999999999886 789999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCCC
Q 003525 562 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIID 641 (813)
Q Consensus 562 ~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 641 (813)
|||...+.||.+|+.|++.+||||||||||++..+|.... ....+..+||||.+|||+..+.++|||+|||+|+.||
T Consensus 377 ~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~---~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD 453 (752)
T KOG0734|consen 377 FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSD---QHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALD 453 (752)
T ss_pred hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccH---HHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhh
Confidence 9999999999999999999999999999999999997643 2278899999999999999999999999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003525 642 PALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERE 721 (813)
Q Consensus 642 ~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~ 721 (813)
+||+||||||++|.+|.||...|.+||+.++.+.+++.++|+..||+-|.|||||||.++++.|+..|..+.
T Consensus 454 ~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg-------- 525 (752)
T KOG0734|consen 454 KALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG-------- 525 (752)
T ss_pred HHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred HhhccCCcccccccccccccccHHHHHHHHhhc
Q 003525 722 RRKMENPEAMEEDEVDDVDEIKAVHFEESMKYA 754 (813)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~ 754 (813)
...|+++|++-|-.++
T Consensus 526 -----------------a~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 526 -----------------AEMVTMKHLEFAKDRI 541 (752)
T ss_pred -----------------cccccHHHHhhhhhhe
Confidence 2368888888887665
No 15
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=7.1e-45 Score=408.69 Aligned_cols=399 Identities=25% Similarity=0.384 Sum_probs=304.4
Q ss_pred CCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHH
Q 003525 308 APSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 387 (813)
Q Consensus 308 ~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~ 387 (813)
.|.++++.+++.++.+ .. ++..|.++........+.+|+.+. ...+++.|.+ +...++++.|+.++
T Consensus 81 ~~~~~vl~d~h~~~~~-----~~----~~r~l~~l~~~~~~~~~~~i~~~~--~~~~p~el~~---~~~~~~~~lP~~~e 146 (489)
T CHL00195 81 TPALFLLKDFNRFLND-----IS----ISRKLRNLSRILKTQPKTIIIIAS--ELNIPKELKD---LITVLEFPLPTESE 146 (489)
T ss_pred CCcEEEEecchhhhcc-----hH----HHHHHHHHHHHHHhCCCEEEEEcC--CCCCCHHHHh---ceeEEeecCcCHHH
Confidence 3789999999988832 11 223333333223333444444443 2457888875 45678999999999
Q ss_pred HHHHHHHHhcCCcc-ccchhhHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcccccccchhhhHHhhhhccccchhhhcc
Q 003525 388 RLEILRIHTKNMKL-AEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTA 466 (813)
Q Consensus 388 R~~Il~~~~~~~~l-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~a 466 (813)
..++++........ .++..++.++..+.|++..++..++..+.... ..++. +.++ . +. +...+.
T Consensus 147 i~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~-----~~~~~--~~~~-----~--i~-~~k~q~ 211 (489)
T CHL00195 147 IKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIATY-----KTIDE--NSIP-----L--IL-EEKKQI 211 (489)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-----CCCCh--hhHH-----H--HH-HHHHHH
Confidence 99999877654332 24456788999999999999888776543211 00110 0000 0 00 000001
Q ss_pred cccCCCCcccccccccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHh
Q 003525 467 LGTSNPSALRETVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC 546 (813)
Q Consensus 467 l~~~~p~~~~~~~~~~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~ 546 (813)
+.. ...- ....+..+|++|||++.+|+.|.+.... .......+|+.+++|+|||||||||||++|+++|+++
T Consensus 212 ~~~---~~~l--e~~~~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 212 ISQ---TEIL--EFYSVNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred Hhh---hccc--cccCCCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 100 0000 0113567899999999999999865332 2334566799999999999999999999999999999
Q ss_pred CCeEEEEeccchhhhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCC
Q 003525 547 QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKK 626 (813)
Q Consensus 547 ~~~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~ 626 (813)
+.+|+.++++.+.++|+|+++++++++|+.|+...||||||||||.++..+... ..++...+++++||+.|+. ...
T Consensus 284 ~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~--~d~~~~~rvl~~lL~~l~~--~~~ 359 (489)
T CHL00195 284 QLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK--GDSGTTNRVLATFITWLSE--KKS 359 (489)
T ss_pred CCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC--CCchHHHHHHHHHHHHHhc--CCC
Confidence 999999999999999999999999999999999999999999999998765432 1245678999999999985 356
Q ss_pred cEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC--CcccHHHHHHHcCCCCHHHHHHHHHH
Q 003525 627 TVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS--PDVDLSALARYTHGFSGADITEVCQR 704 (813)
Q Consensus 627 ~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~--~~~d~~~la~~~~g~sg~di~~l~~~ 704 (813)
+|+||+|||+++.||++++||||||++|+|++|+.++|.+||+.++++.... .+.|++.||+.|+||||+||+++|.+
T Consensus 360 ~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~e 439 (489)
T CHL00195 360 PVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIE 439 (489)
T ss_pred ceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999886432 47899999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHhhccCCcccccccccccccccHHHHHHHHhhccCC--CCHHHHHHHHHHHHHH
Q 003525 705 ACKYAIRENIEKDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARRS--VSDADIRKYQLFAQTL 773 (813)
Q Consensus 705 a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s--~~~~~~~~y~~~~~~~ 773 (813)
|+..|..+. ..++.+||..|++++.|+ ...++++.+++|...-
T Consensus 440 A~~~A~~~~--------------------------~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~~ 484 (489)
T CHL00195 440 AMYIAFYEK--------------------------REFTTDDILLALKQFIPLAQTEKEQIEALQNWASSG 484 (489)
T ss_pred HHHHHHHcC--------------------------CCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHcC
Confidence 998886532 369999999999999996 5788999999998753
No 16
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-45 Score=400.07 Aligned_cols=271 Identities=42% Similarity=0.754 Sum_probs=247.2
Q ss_pred cccccccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEec
Q 003525 203 REDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLING 282 (813)
Q Consensus 203 ~~~~~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~ 282 (813)
++..-.+++++|+||||+++...++...|.+|.++|++|+.+|+..|.||||+||||||||.||+++|++.+..|+.|.|
T Consensus 499 REGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKG 578 (802)
T KOG0733|consen 499 REGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKG 578 (802)
T ss_pred cccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecC
Confidence 33344678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCC
Q 003525 283 PEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN 362 (813)
Q Consensus 283 ~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~ 362 (813)
++++++|+|+++..+|.+|+.|+...|||||+||+|+|++.++........|+++||++.|||+..+.+|.||++||+|+
T Consensus 579 PELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPD 658 (802)
T KOG0733|consen 579 PELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPD 658 (802)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCc
Confidence 99999999999999999999999999999999999999999998888888999999999999999999999999999999
Q ss_pred CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhc--CCccccchhhHHHHhhcC--CCchHHHHHHHHHHHHHHHHhhc
Q 003525 363 SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTK--NMKLAEDVDLERVAKDTH--GYVGSDLAALCTEAALQCIREKM 438 (813)
Q Consensus 363 ~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~--~~~l~~~~~l~~la~~t~--g~~~~dl~~l~~~a~~~~~~~~~ 438 (813)
.|||++.|||||++.++++.|+..+|.+||+.+++ +.++..+++++.++..+. ||+|+||.+|+++|++.++++..
T Consensus 659 iIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~ 738 (802)
T KOG0733|consen 659 IIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESL 738 (802)
T ss_pred ccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 678899999999999877 99999999999999999998876
Q ss_pred ccccccchhhhHHhhhhccccchhhhcccccCCCCc
Q 003525 439 DVIDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSA 474 (813)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~p~~ 474 (813)
..++.......... ....++..||+.|++.+.|+.
T Consensus 739 ~~~~~~~~~~~~~~-~~~~~t~~hF~eA~~~i~pSv 773 (802)
T KOG0733|consen 739 FEIDSSEDDVTVRS-STIIVTYKHFEEAFQRIRPSV 773 (802)
T ss_pred hhccccCcccceee-eeeeecHHHHHHHHHhcCCCc
Confidence 54443332221111 134577889999999998874
No 17
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-46 Score=374.04 Aligned_cols=249 Identities=39% Similarity=0.720 Sum_probs=235.4
Q ss_pred ccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhh
Q 003525 481 EVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 560 (813)
Q Consensus 481 ~~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~ 560 (813)
..|.-++.||||++...+++++.+..|+.||+.+..+|+.+|+|++|||+||||||+||+|+|+...+.|+.+-|++|+.
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCC
Q 003525 561 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII 640 (813)
Q Consensus 561 ~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l 640 (813)
+|.|+..+.+|++|+-|...+|+|+||||||++..+|-++.+.......|.+-+||+++||+...+.|-||+|||+.+.|
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~L 337 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 337 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccccc
Confidence 99999999999999999999999999999999999997665555556677778999999999999999999999999999
Q ss_pred CccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003525 641 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIER 720 (813)
Q Consensus 641 d~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~ 720 (813)
||||+||||+|+.|.||.||...++.||++|..++.+..++.++.+...-+.+|||||+++|.+|.+.|+++..
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerR------ 411 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERR------ 411 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHH------
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999752
Q ss_pred HHhhccCCcccccccccccccccHHHHHHHHhhc
Q 003525 721 ERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYA 754 (813)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~ 754 (813)
..++++||.+|.+++
T Consensus 412 -------------------m~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 412 -------------------MKVTMEDFKKAKEKV 426 (440)
T ss_pred -------------------hhccHHHHHHHHHHH
Confidence 269999999998775
No 18
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-46 Score=365.25 Aligned_cols=251 Identities=42% Similarity=0.722 Sum_probs=238.5
Q ss_pred ccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhh
Q 003525 481 EVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 560 (813)
Q Consensus 481 ~~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~ 560 (813)
+.|.-.++||||++...++|.+.+..|+.+++.|.++|+.+|+|+|+|||||||||++|++.|...+..|+.+-|+.+..
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 45777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCC
Q 003525 561 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII 640 (813)
Q Consensus 561 ~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l 640 (813)
+|+|+..+.+|..|..|+..+|+||||||+|++..+|-++....+....|.+-+||++|||+.+..+|-||++|||.+.|
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiL 323 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDIL 323 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeeccccccc
Confidence 99999999999999999999999999999999999998776666667788889999999999999999999999999999
Q ss_pred CccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003525 641 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIER 720 (813)
Q Consensus 641 d~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~ 720 (813)
||||+|.||+|+.|+||.|+.+.|..|++.|.+++.+.+|+++++||+.|++|+|++++++|-+|.+.|+++.
T Consensus 324 DPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~------- 396 (424)
T KOG0652|consen 324 DPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRG------- 396 (424)
T ss_pred CHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred HHhhccCCcccccccccccccccHHHHHHHHhhccC
Q 003525 721 ERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARR 756 (813)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~ 756 (813)
...|+.+||.+++.+++.
T Consensus 397 ------------------atev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 397 ------------------ATEVTHEDFMEGILEVQA 414 (424)
T ss_pred ------------------cccccHHHHHHHHHHHHH
Confidence 237999999999987643
No 19
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-45 Score=402.90 Aligned_cols=251 Identities=48% Similarity=0.842 Sum_probs=239.7
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhh
Q 003525 208 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS 287 (813)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~ 287 (813)
..++++|+||||+++.+.+|++.|.+|++||+.|..+|+.+++|||||||||||||++||++|++.+.+|+.|.|+++++
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS 506 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCCCHH
Q 003525 288 KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA 367 (813)
Q Consensus 288 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~ 367 (813)
+|+|+++..++.+|+.|+...|||+|+||||.++..|+...+.+..|++++|++.|||+....+|+|||+||+|+.||++
T Consensus 507 k~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~A 586 (693)
T KOG0730|consen 507 KYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPA 586 (693)
T ss_pred HhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHH
Confidence 99999999999999999999999999999999999998766788999999999999999999999999999999999999
Q ss_pred hhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcccccccchh
Q 003525 368 LRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLEDET 447 (813)
Q Consensus 368 l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~ 447 (813)
|.||||||+.|+++.|+.+.|++||+.+++++++.++++++.|+..|+||+|+||..+|++|+..++++...
T Consensus 587 LlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~-------- 658 (693)
T KOG0730|consen 587 LLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE-------- 658 (693)
T ss_pred HcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred hhHHhhhhccccchhhhcccccCCCC
Q 003525 448 IDAEVLNSMAVTNEHFQTALGTSNPS 473 (813)
Q Consensus 448 ~~~~~~~~~~v~~~d~~~al~~~~p~ 473 (813)
...++..||.++++...++
T Consensus 659 -------a~~i~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 659 -------ATEITWQHFEEALKAVRPS 677 (693)
T ss_pred -------cccccHHHHHHHHHhhccc
Confidence 3457788999999887665
No 20
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-45 Score=361.31 Aligned_cols=259 Identities=39% Similarity=0.701 Sum_probs=239.3
Q ss_pred CCCcccccccccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeE
Q 003525 471 NPSALRETVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF 550 (813)
Q Consensus 471 ~p~~~~~~~~~~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~ 550 (813)
.|+..-..+-+.|++++.|+||..+..+.|++.+..|+.+|+.|..+|+.||+|+|||||||||||++|+++|+..++-|
T Consensus 160 dpsvtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacf 239 (435)
T KOG0729|consen 160 DPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACF 239 (435)
T ss_pred CCceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceE
Confidence 34433334456899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccchhhhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEE
Q 003525 551 ISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFI 630 (813)
Q Consensus 551 i~v~~~~l~~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~v 630 (813)
+.|-|++|..+|+|+..+.++++|+.|+...-|||||||||++.+.|-+.+.+.+....|.+-+|+++|||+...+++-|
T Consensus 240 irvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikv 319 (435)
T KOG0729|consen 240 IRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKV 319 (435)
T ss_pred EeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEE
Confidence 99999999999999999999999999999999999999999999998655444455677888899999999999999999
Q ss_pred EeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 003525 631 IGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAI 710 (813)
Q Consensus 631 i~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~l~~~a~~~a~ 710 (813)
++|||||+.|||||+||||+|+.++|.+||.+.|..||+.|.+.+.+..++.++.||+...+-+|++|+.+|.+|.++|+
T Consensus 320 lmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfai 399 (435)
T KOG0729|consen 320 LMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAI 399 (435)
T ss_pred EeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHhhccCCcccccccccccccccHHHHHHHHhhc
Q 003525 711 RENIEKDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYA 754 (813)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~ 754 (813)
+... ...|..||.+|+.++
T Consensus 400 rarr-------------------------k~atekdfl~av~kv 418 (435)
T KOG0729|consen 400 RARR-------------------------KVATEKDFLDAVNKV 418 (435)
T ss_pred HHHh-------------------------hhhhHHHHHHHHHHH
Confidence 8652 257889999999875
No 21
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-44 Score=403.92 Aligned_cols=250 Identities=45% Similarity=0.779 Sum_probs=232.0
Q ss_pred cCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhhh
Q 003525 482 VPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 561 (813)
Q Consensus 482 ~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~~ 561 (813)
...+.|.|+.|++++|++|.|.|.+ +++|+.|.++|..+|+|+||+||||||||+||||+|++.+.||+.++|++++.+
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 3468999999999999999999886 889999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccC-CCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCC
Q 003525 562 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG-SSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII 640 (813)
Q Consensus 562 ~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~-~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l 640 (813)
++|.....++.+|+.|+..+|||+|+||||.+...|+ ...+..+...+..+||||.+|||+...+.|+|+++||||+.|
T Consensus 384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~l 463 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDIL 463 (774)
T ss_pred hcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCcccc
Confidence 9999999999999999999999999999999999994 233344556788999999999999999999999999999999
Q ss_pred CccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhHH
Q 003525 641 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIE 719 (813)
Q Consensus 641 d~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~d~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~ 719 (813)
|+||+||||||+.|++++||...|.+||+.|+++.+++ +++|+..+|..|.||||+||.++|++|+..|.++..
T Consensus 464 d~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~----- 538 (774)
T KOG0731|consen 464 DPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL----- 538 (774)
T ss_pred CHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc-----
Confidence 99999999999999999999999999999999999985 788999999999999999999999999999999752
Q ss_pred HHHhhccCCcccccccccccccccHHHHHHHHhhccCC
Q 003525 720 RERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARRS 757 (813)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s 757 (813)
..|+..||+.|++.+...
T Consensus 539 --------------------~~i~~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 539 --------------------REIGTKDLEYAIERVIAG 556 (774)
T ss_pred --------------------CccchhhHHHHHHHHhcc
Confidence 379999999999855433
No 22
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=2.3e-43 Score=389.01 Aligned_cols=254 Identities=44% Similarity=0.730 Sum_probs=236.6
Q ss_pred cccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchh
Q 003525 480 VEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 559 (813)
Q Consensus 480 ~~~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~ 559 (813)
.+.|+++|+||||++.+|++|++.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCC
Q 003525 560 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDI 639 (813)
Q Consensus 560 ~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ 639 (813)
.+|+|++++.++.+|..|+...||||||||||.++.+|.....+.+....+++.+||+.||++....+++||+|||+|+.
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~ 296 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 296 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh
Confidence 99999999999999999999999999999999999888554333344567899999999999988889999999999999
Q ss_pred CCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhHH
Q 003525 640 IDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIE 719 (813)
Q Consensus 640 ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~ 719 (813)
||||++||||||..|+|++|+.++|..||+.+++++++..++++..++..|+||||+||.++|++|++.|+++.
T Consensus 297 LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~------ 370 (398)
T PTZ00454 297 LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN------ 370 (398)
T ss_pred CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred HHHhhccCCcccccccccccccccHHHHHHHHhhccCCC
Q 003525 720 RERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARRSV 758 (813)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~ 758 (813)
...|+++||++|+.++....
T Consensus 371 -------------------~~~i~~~df~~A~~~v~~~~ 390 (398)
T PTZ00454 371 -------------------RYVILPKDFEKGYKTVVRKT 390 (398)
T ss_pred -------------------CCccCHHHHHHHHHHHHhcc
Confidence 13799999999999976543
No 23
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-43 Score=366.61 Aligned_cols=288 Identities=36% Similarity=0.608 Sum_probs=245.0
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhc-CCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhhh
Q 003525 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFG-MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 561 (813)
Q Consensus 483 ~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~-~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~~ 561 (813)
-.++|+||||++.+++.|.+.|..|+.+++.|...+ +.+++|+|||||||||||+||+++|.+.+.+|+.|.++.+.++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 468999999999999999999999999999996544 5678999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCC--cEEEEeccCCCCC
Q 003525 562 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKK--TVFIIGATNRPDI 639 (813)
Q Consensus 562 ~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~--~v~vi~aTn~~~~ 639 (813)
|+|++++.++.+|..|.+..||||||||+|+++..|+++ ..++...+.++|+...||+..++ +|+|+||||||..
T Consensus 167 WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~---dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~D 243 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRST---DHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFD 243 (386)
T ss_pred hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccc---hHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCcc
Confidence 999999999999999999999999999999999999433 24678889999999999997654 5999999999999
Q ss_pred CCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhHH
Q 003525 640 IDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIE 719 (813)
Q Consensus 640 ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~ 719 (813)
||.|++| |+..+++|+.|+.++|.+||+..+++..+++++|+.++|..|+||||+||.++|+.|+...+++.+.....
T Consensus 244 lDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~ 321 (386)
T KOG0737|consen 244 LDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETG 321 (386)
T ss_pred HHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhccc
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999999998876400
Q ss_pred -HHHhh-ccCCccccc-ccccccccccHHHHHHHHhhccCCCCHHH--HHHHHHHHHHHhh
Q 003525 720 -RERRK-MENPEAMEE-DEVDDVDEIKAVHFEESMKYARRSVSDAD--IRKYQLFAQTLQQ 775 (813)
Q Consensus 720 -~~~~~-~~~~~~~~~-~~~~~~~~i~~~~f~~a~~~~~~s~~~~~--~~~y~~~~~~~~~ 775 (813)
..... ......... ...-..++++++||..+...+.++++.+. ....+.|.+.|+.
T Consensus 322 ~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e 382 (386)
T KOG0737|consen 322 LLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGE 382 (386)
T ss_pred chhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhcc
Confidence 00000 000000000 00112578999999999998888765443 3455667666643
No 24
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-42 Score=379.65 Aligned_cols=269 Identities=43% Similarity=0.738 Sum_probs=241.7
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhh
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM 286 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~ 286 (813)
++++++.|+||||+++.+..|.+.|.+|+.||++|.+ |+.+..|||||||||||||.+||++|.++...|+.|.|++++
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 4688999999999999999999999999999999965 888999999999999999999999999999999999999999
Q ss_pred hhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCC--CchhHHHHHHHHHHHHhhcccc--CCcEEEEEecCCCC
Q 003525 287 SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREK--THGEVERRIVSQLLTLMDGLKS--RAHVIVMGATNRPN 362 (813)
Q Consensus 287 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~--~~~~~~~~v~~~Ll~~ld~~~~--~~~vivi~atn~~~ 362 (813)
++|+|++++++|.+|+.|+...|||||+||+|.++|+|+. .++.+..|+++||+..||++.. ...|+|||+||+|+
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPD 822 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPD 822 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcc
Confidence 9999999999999999999999999999999999999975 4567889999999999999984 56799999999999
Q ss_pred CCCHHhhccCCcceEEEcCCC-CHHHHHHHHHHHhcCCccccchhhHHHHhhcC-CCchHHHHHHHHHHHHHHHHhhccc
Q 003525 363 SIDPALRRFGRFDREIDIGVP-DEVGRLEILRIHTKNMKLAEDVDLERVAKDTH-GYVGSDLAALCTEAALQCIREKMDV 440 (813)
Q Consensus 363 ~ld~~l~r~~Rf~~~i~i~~p-~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~-g~~~~dl~~l~~~a~~~~~~~~~~~ 440 (813)
.|||+|.||||||+.++++++ +.+.+..+|++.++++.+..++++.++|+.++ .|+|+|+.++|..|.+.+++|....
T Consensus 823 LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ 902 (953)
T KOG0736|consen 823 LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHD 902 (953)
T ss_pred ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988 46778899999999999999999999999875 7999999999999999999987665
Q ss_pred ccccchhhhHHhhhhccccchhhhcccccCCCCccc
Q 003525 441 IDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALR 476 (813)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~p~~~~ 476 (813)
++...............++++||.++.++..|+...
T Consensus 903 ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~ 938 (953)
T KOG0736|consen 903 IESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSE 938 (953)
T ss_pred hhhccccccccCCceEEEEHHHHHHHHHhcCCcccH
Confidence 443321112222346779999999999999887543
No 25
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-42 Score=388.07 Aligned_cols=247 Identities=43% Similarity=0.791 Sum_probs=234.1
Q ss_pred cCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhhh
Q 003525 482 VPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 561 (813)
Q Consensus 482 ~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~~ 561 (813)
...++|.|+.|.+++|++|.+.|.+ ++.|..|..+|...|+|++|+||||||||+|||++|++.+.||+.+++++++.+
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 4578999999999999999999875 788999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCCC
Q 003525 562 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIID 641 (813)
Q Consensus 562 ~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 641 (813)
|+|.....+|.+|.+|++++|||+||||||++...|+.+.+......+..+||||.+|||+..+..|+||++|||||.+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 99999999999999999999999999999999999987655555666779999999999999989999999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003525 642 PALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERE 721 (813)
Q Consensus 642 ~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~ 721 (813)
|||+||||||+.|.++.||...|.+|++.|+++.+++.++|+..+|+.|.||||+|+.+++++|+..|.+++
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n-------- 374 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRN-------- 374 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred HhhccCCcccccccccccccccHHHHHHHHhhc
Q 003525 722 RRKMENPEAMEEDEVDDVDEIKAVHFEESMKYA 754 (813)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~ 754 (813)
...|++.||++|+.++
T Consensus 375 -----------------~~~i~~~~i~ea~drv 390 (596)
T COG0465 375 -----------------KKEITMRDIEEAIDRV 390 (596)
T ss_pred -----------------CeeEeccchHHHHHHH
Confidence 2379999999999887
No 26
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-42 Score=370.88 Aligned_cols=300 Identities=36% Similarity=0.617 Sum_probs=250.7
Q ss_pred cccCCccccc--ccccchhh-hhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCe-EEEEec
Q 003525 480 VEVPNVSWED--IGGLDNVK-RELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-FISVKG 555 (813)
Q Consensus 480 ~~~~~~~~~~--i~g~~~~k-~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~-~i~v~~ 555 (813)
+-.|+..|++ |||++.-- ...+++.....-.|+...++|...-+|+|||||||||||++||.|..++++. --.|+|
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNG 290 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNG 290 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCc
Confidence 3457777777 57887543 3345555555666889999999999999999999999999999999999753 456899
Q ss_pred cchhhhcccccHHHHHHHHHHHHh--------CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCc
Q 003525 556 PELLTMWFGESEANVREIFDKARQ--------SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKT 627 (813)
Q Consensus 556 ~~l~~~~vg~se~~i~~vF~~a~~--------~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~ 627 (813)
|+++++|||+||.+||++|..|.+ +.--||+|||||+++..||+..++ .++++.|+||||.-|||++..++
T Consensus 291 PeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~-TGVhD~VVNQLLsKmDGVeqLNN 369 (744)
T KOG0741|consen 291 PEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGS-TGVHDTVVNQLLSKMDGVEQLNN 369 (744)
T ss_pred HHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCC-CCccHHHHHHHHHhcccHHhhhc
Confidence 999999999999999999999865 234599999999999999987654 67899999999999999999999
Q ss_pred EEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccC----CCCCcccHHHHHHHcCCCCHHHHHHHHH
Q 003525 628 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS----PISPDVDLSALARYTHGFSGADITEVCQ 703 (813)
Q Consensus 628 v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~----~~~~~~d~~~la~~~~g~sg~di~~l~~ 703 (813)
++||+-|||+|+||+||||||||...+++.+||++.|.+|++.|.+++ .++.++|+.+||..|.+||||+|+.+++
T Consensus 370 ILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVk 449 (744)
T KOG0741|consen 370 ILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVK 449 (744)
T ss_pred EEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHH
Confidence 999999999999999999999999999999999999999999999776 4778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHhhccCCcccccccccccccccHHHHHHHHhhccC--CCCHHHHHHHHH---------HHHH
Q 003525 704 RACKYAIRENIEKDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARR--SVSDADIRKYQL---------FAQT 772 (813)
Q Consensus 704 ~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~--s~~~~~~~~y~~---------~~~~ 772 (813)
.|...|+.+.+..... ...+....+.-.|+++||..||.+++| .+++|+++.|.. +.+-
T Consensus 450 sA~S~A~nR~vk~~~~----------~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~v~~i 519 (744)
T KOG0741|consen 450 SAQSFAMNRHVKAGGK----------VEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPPVTRI 519 (744)
T ss_pred HHHHHHHHhhhccCcc----------eecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecccHHHH
Confidence 9999999998765411 001111233457999999999999999 479999998853 3444
Q ss_pred HhhccCCCCccccccccc
Q 003525 773 LQQSRGFGSEFRFADRTE 790 (813)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~ 790 (813)
+....-++.|+|.++++.
T Consensus 520 l~~G~llv~qvk~s~~s~ 537 (744)
T KOG0741|consen 520 LDDGKLLVQQVKNSERSP 537 (744)
T ss_pred HhhHHHHHHHhhccccCc
Confidence 444555666888888743
No 27
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=7.9e-42 Score=335.79 Aligned_cols=244 Identities=38% Similarity=0.696 Sum_probs=216.9
Q ss_pred ccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhh
Q 003525 481 EVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 560 (813)
Q Consensus 481 ~~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~ 560 (813)
..++++++|++|+++.|+..+-.+.| ++.|+.|.+ ..|+++|||||||||||++|+++|++.+.+|+.+++.++++
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHH-hhChHHhcc---cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 35789999999999999887655554 677777655 57889999999999999999999999999999999999999
Q ss_pred hcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCC
Q 003525 561 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII 640 (813)
Q Consensus 561 ~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l 640 (813)
.|+|+..+.|+++|++|++.+|||+||||+|+++-.|... +-.+....++|.||++|||+..+.+|+.||+||+|+.|
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQ--elRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~L 267 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQ--ELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELL 267 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHH--HhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhc
Confidence 9999999999999999999999999999999999877542 22345678999999999999999999999999999999
Q ss_pred CccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHH-HHHHHHHHHHHHHHHHhHH
Q 003525 641 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITE-VCQRACKYAIRENIEKDIE 719 (813)
Q Consensus 641 d~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~-l~~~a~~~a~~~~~~~~~~ 719 (813)
|||+.+ ||...|+|.+|+.++|..|++.+++++|+.-+.++..+++.|.||||+||.. +++.|...|+.++-
T Consensus 268 D~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~----- 340 (368)
T COG1223 268 DPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDR----- 340 (368)
T ss_pred CHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhch-----
Confidence 999998 9999999999999999999999999999999999999999999999999986 56666666666542
Q ss_pred HHHhhccCCcccccccccccccccHHHHHHHHhhccCC
Q 003525 720 RERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARRS 757 (813)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s 757 (813)
..|+.+||+.|+++-+++
T Consensus 341 --------------------e~v~~edie~al~k~r~~ 358 (368)
T COG1223 341 --------------------EKVEREDIEKALKKERKR 358 (368)
T ss_pred --------------------hhhhHHHHHHHHHhhccc
Confidence 269999999999975543
No 28
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=2.7e-41 Score=375.09 Aligned_cols=258 Identities=48% Similarity=0.813 Sum_probs=238.6
Q ss_pred ccccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccch
Q 003525 479 VVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 558 (813)
Q Consensus 479 ~~~~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l 558 (813)
..+.|.+.|++|+|+++.++.|.+.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|++++.+|+.+.++++
T Consensus 122 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l 201 (389)
T PRK03992 122 VIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 201 (389)
T ss_pred ecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCC
Q 003525 559 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD 638 (813)
Q Consensus 559 ~~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~ 638 (813)
.++|+|++++.++.+|+.++...||||||||||.++..|+...........+.+.+||.+++++...++++||+|||+++
T Consensus 202 ~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~ 281 (389)
T PRK03992 202 VQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRID 281 (389)
T ss_pred hHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChh
Confidence 99999999999999999999999999999999999988865543334456778889999999988888999999999999
Q ss_pred CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhH
Q 003525 639 IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDI 718 (813)
Q Consensus 639 ~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~ 718 (813)
.+|++++||||||..|+||+|+.++|.+||+.+++++++..++++..+|..|+||||+||+++|++|++.|+++.
T Consensus 282 ~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~----- 356 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD----- 356 (389)
T ss_pred hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 999999999999999999999999999999999999999988999999999999999999999999999998753
Q ss_pred HHHHhhccCCcccccccccccccccHHHHHHHHhhccCCCCHH
Q 003525 719 ERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARRSVSDA 761 (813)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~~~~ 761 (813)
...|+.+||.+|+++++++...+
T Consensus 357 --------------------~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 357 --------------------RTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred --------------------CCCcCHHHHHHHHHHHhcccccc
Confidence 12699999999999998865543
No 29
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=9.5e-41 Score=369.87 Aligned_cols=250 Identities=40% Similarity=0.713 Sum_probs=233.0
Q ss_pred ccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhh
Q 003525 481 EVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 560 (813)
Q Consensus 481 ~~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~ 560 (813)
+.|..+|+||+|++..+++|.+.+.+|+.+++.|..+++.+++|+|||||||||||++|+++|++++.+|+.+.++++.+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCC
Q 003525 561 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII 640 (813)
Q Consensus 561 ~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l 640 (813)
+|+|++++.++.+|+.|+...||||||||||.++.+|............+++.+||++||++....++.||+|||+++.|
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 99999999999999999999999999999999998886544333445567888999999999888899999999999999
Q ss_pred CccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003525 641 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIER 720 (813)
Q Consensus 641 d~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~ 720 (813)
|++++||||||+.|+|++||.++|.+||+.++.++.+..+++++.++..++||||+||+++|++|++.|+++.
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~------- 408 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER------- 408 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred HHhhccCCcccccccccccccccHHHHHHHHhhcc
Q 003525 721 ERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYAR 755 (813)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~ 755 (813)
...|+.+||.+|+.++.
T Consensus 409 ------------------r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 409 ------------------RMKVTQADFRKAKEKVL 425 (438)
T ss_pred ------------------CCccCHHHHHHHHHHHH
Confidence 23699999999998863
No 30
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-40 Score=358.40 Aligned_cols=279 Identities=38% Similarity=0.653 Sum_probs=248.6
Q ss_pred ccccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccch
Q 003525 479 VVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 558 (813)
Q Consensus 479 ~~~~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l 558 (813)
....+++.|+|+.|++.+|+.+.+.+.||...++.|..+ ..+.+|+||.||||+|||+|++|+|.+++..|+.++++.|
T Consensus 144 ~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassL 222 (428)
T KOG0740|consen 144 GDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSL 222 (428)
T ss_pred hccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHh
Confidence 344577999999999999999999999999999999874 4566799999999999999999999999999999999999
Q ss_pred hhhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccC--CCCcEEEEeccCC
Q 003525 559 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN--AKKTVFIIGATNR 636 (813)
Q Consensus 559 ~~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~--~~~~v~vi~aTn~ 636 (813)
.++|+|++++.++.+|+-|+...|+|+||||||+++..|.. ......+|+..++|.++++.. ..++|+||||||+
T Consensus 223 tsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~---~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~ 299 (428)
T KOG0740|consen 223 TSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD---NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNR 299 (428)
T ss_pred hhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC---cccccchhhhhHHHhhhccccCCCCCeEEEEecCCC
Confidence 99999999999999999999999999999999999999943 334567899999999999975 4569999999999
Q ss_pred CCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 003525 637 PDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEVCQRACKYAIRENIE 715 (813)
Q Consensus 637 ~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~d~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~ 715 (813)
||.+|.|++| ||.+++|+|+||+++|..+|+..+++.+.. .+.|++.|++.|+||||+||.++|++|++--++....
T Consensus 300 P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~ 377 (428)
T KOG0740|consen 300 PWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGG 377 (428)
T ss_pred chHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhccc
Confidence 9999999999 999999999999999999999999877433 4578999999999999999999999999887776533
Q ss_pred H-hHHHHHhhccCCcccccccccccccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhc
Q 003525 716 K-DIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQS 776 (813)
Q Consensus 716 ~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~~~~~~~~y~~~~~~~~~~ 776 (813)
. .+ .-...+..+.++..||+.+++.++|+++.+.+++|++|...|+.+
T Consensus 378 ~~~~-------------~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~~ 426 (428)
T KOG0740|consen 378 TTDL-------------EFIDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGSS 426 (428)
T ss_pred chhh-------------hhcchhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhccc
Confidence 2 11 111234567899999999999999999999999999999999754
No 31
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=2.3e-38 Score=311.44 Aligned_cols=303 Identities=35% Similarity=0.605 Sum_probs=257.9
Q ss_pred hhhHHHHhhHhhhhcCcccccCcEEEEecCceeEEEEEEEecCCceeeeCCCceEEecCCCCccccccccCCCCcccccC
Q 003525 140 GNLFDAYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVKREDEERLNEVGYDDVGG 219 (813)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~~~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~i~G 219 (813)
.++|+.|.++.|.+ ..++.|+.+.-.+....+.|+|+++.|.+.+++++.|.+... .+.. ...+..++++++|+.|
T Consensus 50 ~~~F~~YArdQW~G--e~v~eg~ylFD~~~~pdyAfkvI~~~P~~~~i~~st~i~vl~-~~~~-~~~e~~~~it~ddViG 125 (368)
T COG1223 50 PEVFNIYARDQWLG--EVVREGDYLFDTRMFPDYAFKVIRVVPSGGGIITSTTIFVLE-TPRE-EDREIISDITLDDVIG 125 (368)
T ss_pred HHHHHHHHHHhhcc--eeeecCceEeecccccccceeEEEEeCCCCceecceEEEEec-Ccch-hhhhhhccccHhhhhc
Confidence 46899999999975 458999988776666778999999999987777655554333 3321 1234568999999999
Q ss_pred hHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhhhhcchhHHHHHH
Q 003525 220 VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRK 299 (813)
Q Consensus 220 ~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~~~~g~~~~~l~~ 299 (813)
+++.+.+.+-+++. |..|+.|..| .|++||+|||||||||++|++||++...+++.++..++++.++|+....++.
T Consensus 126 qEeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihe 201 (368)
T COG1223 126 QEEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHE 201 (368)
T ss_pred hHHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHH
Confidence 99999998877775 8889988876 5899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEeccchhccCCCCCC--chhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceE
Q 003525 300 AFEEAEKNAPSIIFIDELDSIAPKREKT--HGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDRE 377 (813)
Q Consensus 300 vf~~a~~~~p~il~iDEid~l~~~~~~~--~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~ 377 (813)
+++.|....|||+||||+|++.-.+... .+++ ..++++|++.||++..+..|+.|++||+++.+|+++|+ ||..+
T Consensus 202 ly~rA~~~aPcivFiDE~DAiaLdRryQelRGDV-sEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs--RFEeE 278 (368)
T COG1223 202 LYERARKAAPCIVFIDELDAIALDRRYQELRGDV-SEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS--RFEEE 278 (368)
T ss_pred HHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccH-HHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh--hhhhe
Confidence 9999999999999999999998776532 2333 46789999999999999999999999999999999999 99999
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCccccchhhHHHHhhcCCCchHHHHH-HHHHHHHHHHHhhcccccccchhhhHHhhhhc
Q 003525 378 IDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAA-LCTEAALQCIREKMDVIDLEDETIDAEVLNSM 456 (813)
Q Consensus 378 i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~-l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (813)
|+|..|+.++|.+|++.+.+.+++.-+.+++.++..+.|++|.||.. .++.|..+++... .-
T Consensus 279 IEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed-----------------~e 341 (368)
T COG1223 279 IEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED-----------------RE 341 (368)
T ss_pred eeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc-----------------hh
Confidence 99999999999999999999999998999999999999999999864 4455666666543 23
Q ss_pred cccchhhhcccccC
Q 003525 457 AVTNEHFQTALGTS 470 (813)
Q Consensus 457 ~v~~~d~~~al~~~ 470 (813)
.++.+|+++|+...
T Consensus 342 ~v~~edie~al~k~ 355 (368)
T COG1223 342 KVEREDIEKALKKE 355 (368)
T ss_pred hhhHHHHHHHHHhh
Confidence 46677788777653
No 32
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-38 Score=311.57 Aligned_cols=247 Identities=43% Similarity=0.733 Sum_probs=226.3
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhh
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM 286 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~ 286 (813)
+..++++|.||||++-+++++++.+++|+.|.++++.+|+.||+|||||||||||||+|++++|+.....|+.+.|+++.
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchh---HHHHHHHHHHHHhhccccCCcEEEEEecCCCCC
Q 003525 287 SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGE---VERRIVSQLLTLMDGLKSRAHVIVMGATNRPNS 363 (813)
Q Consensus 287 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~---~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ 363 (813)
.+|.|+....++.+|.-++.+.|+|+||||+|+++.++-..... --+++.-.|++.|||+.+..+|-||.+||+.+.
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradt 306 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADT 306 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccc
Confidence 99999999999999999999999999999999999887543322 234666778899999999999999999999999
Q ss_pred CCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcccccc
Q 003525 364 IDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDL 443 (813)
Q Consensus 364 ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 443 (813)
+||+|.|+||+++.|+||.|+..++.-++...+.++.+.++++++.+..+.+..+++||.++|++|.+.+++..
T Consensus 307 ldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n------ 380 (408)
T KOG0727|consen 307 LDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN------ 380 (408)
T ss_pred cCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred cchhhhHHhhhhccccchhhhcccccC
Q 003525 444 EDETIDAEVLNSMAVTNEHFQTALGTS 470 (813)
Q Consensus 444 ~~~~~~~~~~~~~~v~~~d~~~al~~~ 470 (813)
...+...||+++....
T Consensus 381 -----------ryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 381 -----------RYVVLQKDFEKAYKTV 396 (408)
T ss_pred -----------ceeeeHHHHHHHHHhh
Confidence 3446667777766543
No 33
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-39 Score=322.87 Aligned_cols=246 Identities=46% Similarity=0.775 Sum_probs=225.8
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhh
Q 003525 208 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS 287 (813)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~ 287 (813)
+-+.-+|.||||++.|+++|++.+++|+.||++++..|+.||+||+|||+||||||.||+++|+...+.|+.+-|+++..
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 44667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHH---HHHHHHhhccccCCcEEEEEecCCCCCC
Q 003525 288 KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIV---SQLLTLMDGLKSRAHVIVMGATNRPNSI 364 (813)
Q Consensus 288 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~---~~Ll~~ld~~~~~~~vivi~atn~~~~l 364 (813)
+|.|+....+|.+|+-|..+.|+|+||||||++..++-...+.-++.+. -.|++.+|++.++..|-||.+||+.+.+
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~L 337 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 337 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccccc
Confidence 9999999999999999999999999999999999888654443333333 3567778999999999999999999999
Q ss_pred CHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccccccc
Q 003525 365 DPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLE 444 (813)
Q Consensus 365 d~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 444 (813)
||+|.|+||+++.|+|+.||+..+..|+.+|+.++.+..+++++.+....+.++|+||+++|.+|.+.+++..
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer------- 410 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER------- 410 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred chhhhHHhhhhccccchhhhcccccC
Q 003525 445 DETIDAEVLNSMAVTNEHFQTALGTS 470 (813)
Q Consensus 445 ~~~~~~~~~~~~~v~~~d~~~al~~~ 470 (813)
...++++||.++.+.+
T Consensus 411 ----------Rm~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 411 ----------RMKVTMEDFKKAKEKV 426 (440)
T ss_pred ----------HhhccHHHHHHHHHHH
Confidence 4568888888876543
No 34
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-38 Score=311.00 Aligned_cols=246 Identities=42% Similarity=0.792 Sum_probs=226.0
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhh
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM 286 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~ 286 (813)
+++++-+|+-+||+++|+++|++.+++|.+||++|+++|+..|+|+|||||||+|||.|++++|....+.|+.++|+++.
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselv 218 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 218 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCc----hhHHHHHHHHHHHHhhccccCCcEEEEEecCCCC
Q 003525 287 SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTH----GEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN 362 (813)
Q Consensus 287 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~----~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~ 362 (813)
.+|.|+....++.+|--|+.+.|+|+|.||||.+...+.... +++ ++..-.|++.+|++....++-||.+||+.+
T Consensus 219 qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsev-qrtmlellnqldgfeatknikvimatnrid 297 (404)
T KOG0728|consen 219 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEV-QRTMLELLNQLDGFEATKNIKVIMATNRID 297 (404)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHH-HHHHHHHHHhccccccccceEEEEeccccc
Confidence 999999999999999999999999999999999988765432 233 344456778899999999999999999999
Q ss_pred CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccccc
Q 003525 363 SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVID 442 (813)
Q Consensus 363 ~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~ 442 (813)
-+|++|.|+||+++.|+||+|+++.|.+||++|.+++.+...+++..+|+...|-+|++++..|.+|.+.++++.
T Consensus 298 ild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer----- 372 (404)
T KOG0728|consen 298 ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER----- 372 (404)
T ss_pred cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred ccchhhhHHhhhhccccchhhhcccccC
Q 003525 443 LEDETIDAEVLNSMAVTNEHFQTALGTS 470 (813)
Q Consensus 443 ~~~~~~~~~~~~~~~v~~~d~~~al~~~ 470 (813)
...++.+||+-|...+
T Consensus 373 ------------rvhvtqedfemav~kv 388 (404)
T KOG0728|consen 373 ------------RVHVTQEDFEMAVAKV 388 (404)
T ss_pred ------------hccccHHHHHHHHHHH
Confidence 3567888888765543
No 35
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-39 Score=328.23 Aligned_cols=248 Identities=42% Similarity=0.729 Sum_probs=229.9
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhhhc
Q 003525 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 562 (813)
Q Consensus 483 ~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~~~ 562 (813)
.+++|+.++|+-.+..++.+.+..|+..+++|.++|+.+|+|++||||||+|||.+|+++|..++.+|+.+..+++.++|
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCCCc
Q 003525 563 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDP 642 (813)
Q Consensus 563 vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~ 642 (813)
.||+.+.||+.|..|+...|||||+||||+++++|-+.....+....+.+-.|+++||++...++|-+|+|||+|+.|||
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdp 286 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDP 286 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccch
Confidence 99999999999999999999999999999999999554444455667778888999999999999999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003525 643 ALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERER 722 (813)
Q Consensus 643 allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~ 722 (813)
||+||||+|+.+++|+|+...|..|++.+.........+|.+.+.+..+||+|+|+++.|++|.+.|+++.-
T Consensus 287 aLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~-------- 358 (388)
T KOG0651|consen 287 ALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEER-------- 358 (388)
T ss_pred hhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhh--------
Confidence 999999999999999999999999999999888888889999999999999999999999999999988652
Q ss_pred hhccCCcccccccccccccccHHHHHHHHhhcc
Q 003525 723 RKMENPEAMEEDEVDDVDEIKAVHFEESMKYAR 755 (813)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~ 755 (813)
..+-.++|..++.+..
T Consensus 359 -----------------~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 359 -----------------DEVLHEDFMKLVRKQA 374 (388)
T ss_pred -----------------HHHhHHHHHHHHHHHH
Confidence 2577888988887753
No 36
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-38 Score=310.44 Aligned_cols=257 Identities=40% Similarity=0.735 Sum_probs=227.8
Q ss_pred cCCceeeeCCCceEEecCCCCc---cc---cccccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEE
Q 003525 181 DPGEYCVVAPDTEIFCEGEPVK---RE---DEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILL 254 (813)
Q Consensus 181 ~~~~~~~~~~~t~i~~~~~~~~---~~---~~~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL 254 (813)
.|.+.+-+..++.+.++.-|.. +. ..+.-+.-.|+||||+++|++++.+.+.+|+.|++.|+++|+.||+|+|+
T Consensus 131 kPgDLVgvnKDsyliletLP~eyDsrVkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLm 210 (424)
T KOG0652|consen 131 KPGDLVGVNKDSYLILETLPSEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLM 210 (424)
T ss_pred CCcceeeecCCceeehhcCChhhhhhcceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEe
Confidence 3566666777777665543321 10 12344667899999999999999999999999999999999999999999
Q ss_pred ECCCCCchHHHHHHHHHHhCCeEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCc----hh
Q 003525 255 YGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTH----GE 330 (813)
Q Consensus 255 ~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~----~~ 330 (813)
|||||||||.+||+.|...+..|+.+.|+.+...+.|+..+.+|..|+-+....|+||||||+|++..++-... .+
T Consensus 211 YGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDRE 290 (424)
T KOG0652|consen 211 YGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDRE 290 (424)
T ss_pred eCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988875332 22
Q ss_pred HHHHHHHHHHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhHHH
Q 003525 331 VERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERV 410 (813)
Q Consensus 331 ~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~l 410 (813)
+ +|..-.|++.+|++.+...|-||++||+.+-+||+|.|.||+++.|+||.|+++.|.+|+++|.+++.+.++++++++
T Consensus 291 V-QRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeEL 369 (424)
T KOG0652|consen 291 V-QRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEEL 369 (424)
T ss_pred H-HHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHH
Confidence 3 333455778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCchHHHHHHHHHHHHHHHHhhc
Q 003525 411 AKDTHGYVGSDLAALCTEAALQCIREKM 438 (813)
Q Consensus 411 a~~t~g~~~~dl~~l~~~a~~~~~~~~~ 438 (813)
++.|++|.|+..++.|-+|.+.++++..
T Consensus 370 aRsTddFNGAQcKAVcVEAGMiALRr~a 397 (424)
T KOG0652|consen 370 ARSTDDFNGAQCKAVCVEAGMIALRRGA 397 (424)
T ss_pred hhcccccCchhheeeehhhhHHHHhccc
Confidence 9999999999999999999999998753
No 37
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-38 Score=326.81 Aligned_cols=263 Identities=40% Similarity=0.669 Sum_probs=233.0
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhhh
Q 003525 209 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSK 288 (813)
Q Consensus 209 ~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~~ 288 (813)
-+.+.|+||.|+.+.++-|+|.|-+|+..|++|+.+ ..|=++||++||||||||+||+++|.+++..|+.|+.+.+.++
T Consensus 206 np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSK 284 (491)
T KOG0738|consen 206 NPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSK 284 (491)
T ss_pred CCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhh
Confidence 367999999999999999999999999999999863 4566899999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCc-hhHHHHHHHHHHHHhhccccC----CcEEEEEecCCCCC
Q 003525 289 LAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTH-GEVERRIVSQLLTLMDGLKSR----AHVIVMGATNRPNS 363 (813)
Q Consensus 289 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~-~~~~~~v~~~Ll~~ld~~~~~----~~vivi~atn~~~~ 363 (813)
|.|++++.+|.+|+-|+...|++|||||||.||.+++... .+..+|+.+.|+-.|||+... ..|+|+++||-|++
T Consensus 285 wRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWd 364 (491)
T KOG0738|consen 285 WRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWD 364 (491)
T ss_pred hccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcc
Confidence 9999999999999999999999999999999999987643 356789999999999998653 24889999999999
Q ss_pred CCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcccccc
Q 003525 364 IDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDL 443 (813)
Q Consensus 364 ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 443 (813)
||++++| ||.+.|++|.|+.+.|..+++..++...+.++++++.+++.++||+|+||..+|++|++..+++......-
T Consensus 365 iDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~ 442 (491)
T KOG0738|consen 365 IDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTP 442 (491)
T ss_pred hHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999999976543322
Q ss_pred cc-hhhhHHhhhhccccchhhhcccccCCCCcc
Q 003525 444 ED-ETIDAEVLNSMAVTNEHFQTALGTSNPSAL 475 (813)
Q Consensus 444 ~~-~~~~~~~~~~~~v~~~d~~~al~~~~p~~~ 475 (813)
.. .....+... ..++..||+.|+..+.|+..
T Consensus 443 ~ei~~lakE~~~-~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 443 REIRQLAKEEPK-MPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred HHhhhhhhhccc-cccchhhHHHHHHHcCcCCC
Confidence 11 111122222 55889999999999988754
No 38
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=2.2e-38 Score=364.02 Aligned_cols=249 Identities=44% Similarity=0.804 Sum_probs=228.6
Q ss_pred ccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhh
Q 003525 481 EVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 560 (813)
Q Consensus 481 ~~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~ 560 (813)
+.+.++|+|++|++++|+++.+.+.+ +.+++.+..++..+++|+|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 126 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 126 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHH
Confidence 45789999999999999999998876 78888999999999999999999999999999999999999999999999999
Q ss_pred hcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCC
Q 003525 561 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII 640 (813)
Q Consensus 561 ~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l 640 (813)
.|+|.+++.++.+|+.|+...||||||||||.++..|+...........+++++||.+||++....+++||+|||+|+.|
T Consensus 127 ~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~l 206 (495)
T TIGR01241 127 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVL 206 (495)
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhc
Confidence 99999999999999999999999999999999999886543333345678999999999999888899999999999999
Q ss_pred CccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003525 641 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIER 720 (813)
Q Consensus 641 d~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~ 720 (813)
||+++||||||+.|++++|+.++|.+||+.++++.++..++++..++..+.||||+||.++|++|+..|.++.
T Consensus 207 d~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~------- 279 (495)
T TIGR01241 207 DPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN------- 279 (495)
T ss_pred CHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 9999999999999999999999999999999999888888999999999999999999999999988876643
Q ss_pred HHhhccCCcccccccccccccccHHHHHHHHhhcc
Q 003525 721 ERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYAR 755 (813)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~ 755 (813)
...|+.+||+.|+..+.
T Consensus 280 ------------------~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 280 ------------------KTEITMNDIEEAIDRVI 296 (495)
T ss_pred ------------------CCCCCHHHHHHHHHHHh
Confidence 23699999999999864
No 39
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-38 Score=367.78 Aligned_cols=445 Identities=34% Similarity=0.530 Sum_probs=327.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhC-----CeEEEEechh
Q 003525 210 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG-----AFFFLINGPE 284 (813)
Q Consensus 210 ~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~-----~~~v~v~~~~ 284 (813)
..++|+++||++..+.++++++-+|+.||+.|.++++.||+|||++||||||||+.|+++|..+. ..++.-.|.+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 46899999999999999999999999999999999999999999999999999999999998874 3457778899
Q ss_pred hhhhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCC
Q 003525 285 IMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI 364 (813)
Q Consensus 285 l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~l 364 (813)
.+++|+|+.+..++.+|++|...+|+|+|+||||-+++.+......+...++..|+.+|+|+..++.|+|||+||+++.+
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~ 419 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAI 419 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcccc
Confidence 99999999999999999999999999999999999999998888888899999999999999999999999999999999
Q ss_pred CHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcc-ccchhhHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcccccc
Q 003525 365 DPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDL 443 (813)
Q Consensus 365 d~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 443 (813)
|+++||+|||+++++|+.|+.+.|.+|+.+|..+..- .....+..+|..+.||.|+||++||.+|++.++++....+..
T Consensus 420 dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~ 499 (1080)
T KOG0732|consen 420 DPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYS 499 (1080)
T ss_pred chhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeec
Confidence 9999999999999999999999999999999887652 223457889999999999999999999999999887765544
Q ss_pred cchhhhHHhhhhccccchhhhcccccCCCCcccccccccCCccccc--ccccchhhhhhhccccCCCC---C----hhhh
Q 003525 444 EDETIDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWED--IGGLDNVKRELQETVQYPVE---H----PEKF 514 (813)
Q Consensus 444 ~~~~~~~~~~~~~~v~~~d~~~al~~~~p~~~~~~~~~~~~~~~~~--i~g~~~~k~~L~~~i~~~~~---~----~~~~ 514 (813)
....... ....+.+...+|..|+....|+..|........++-.- +.+....-..+...+..... . ...+
T Consensus 500 s~~kl~~-d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v 578 (1080)
T KOG0732|consen 500 SSDKLLI-DVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLV 578 (1080)
T ss_pred ccccccc-cchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHH
Confidence 4332221 12334488899999999888877665333221111000 00011111111111110000 0 0011
Q ss_pred hhh------cCCCCceeeeecCCCCChhHHHHHHHHHh-CCeEEEEeccchhhhc-ccccHHHHHHHHHHHHhCCCeEEE
Q 003525 515 EKF------GMSPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISVKGPELLTMW-FGESEANVREIFDKARQSAPCVLF 586 (813)
Q Consensus 515 ~~~------~~~~~~gilL~GppGtGKT~la~ala~~~-~~~~i~v~~~~l~~~~-vg~se~~i~~vF~~a~~~~p~il~ 586 (813)
+.+ .+-....+++.|..|.|-+.+..+|-+.+ +.+......+.+++.- .+..+..|..+|..|+...|||+|
T Consensus 579 ~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ 658 (1080)
T KOG0732|consen 579 RSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVF 658 (1080)
T ss_pred HhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceee
Confidence 111 11122348899999999999999998876 4444444444554433 456678899999999999999999
Q ss_pred EecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHH
Q 003525 587 FDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQ 666 (813)
Q Consensus 587 iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~ 666 (813)
|-.+|.+..... ..+...|+..++.......+..+-+-+.-+.-.+. .+..+..|+.+.+..
T Consensus 659 ip~~d~w~~~~p----------~s~~~~~~~~l~~~~~~t~i~e~~t~~~~~~~~~~--------~~~t~~~p~~~s~~~ 720 (1080)
T KOG0732|consen 659 IPNVDEWARVIP----------VSFLEEFLSSLDEKALSTPILELHTWDTSFESVNK--------SVVTLSKPSAESTGA 720 (1080)
T ss_pred ccchhhhhhcCc----------chhhhcchhcchhhhhccchhhhccccccccccCc--------cccccccchhhhhHH
Confidence 999999876432 22444455444433222222222221111111111 234556677777777
Q ss_pred HHHHHhc
Q 003525 667 IFKACLR 673 (813)
Q Consensus 667 Il~~~l~ 673 (813)
.|+..++
T Consensus 721 ff~r~I~ 727 (1080)
T KOG0732|consen 721 FFKRLIR 727 (1080)
T ss_pred HHHHHHH
Confidence 7766653
No 40
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=5.9e-38 Score=351.66 Aligned_cols=251 Identities=43% Similarity=0.760 Sum_probs=214.1
Q ss_pred cccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCe----------
Q 003525 480 VEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN---------- 549 (813)
Q Consensus 480 ~~~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~---------- 549 (813)
.+.|+++|++|||++..++++++.+.+|+.+++.|..+++.+++|+|||||||||||++|+++|++++.+
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 3468899999999999999999999999999999999999999999999999999999999999998543
Q ss_pred EEEEeccchhhhcccccHHHHHHHHHHHHhC----CCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCC
Q 003525 550 FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAK 625 (813)
Q Consensus 550 ~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~ 625 (813)
|+.+++++++++|+|++++.++.+|+.++.. .||||||||+|+++..|+...+ +....+++++||++||++...
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s--~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVS--SDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCcc--chHHHHHHHHHHHHhcccccC
Confidence 7788999999999999999999999998864 6999999999999998865322 234578899999999999888
Q ss_pred CcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcc-CCCCC---------cccHHHHHHH------
Q 003525 626 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRK-SPISP---------DVDLSALARY------ 689 (813)
Q Consensus 626 ~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~-~~~~~---------~~d~~~la~~------ 689 (813)
.+++||+|||+++.||||++||||||.+|+|++|+.++|.+||+.++.. .++.. ..++..+++.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~ 411 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLY 411 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999864 34421 1122222221
Q ss_pred -----------------------cCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCcccccccccccccccHHH
Q 003525 690 -----------------------THGFSGADITEVCQRACKYAIRENIEKDIERERRKMENPEAMEEDEVDDVDEIKAVH 746 (813)
Q Consensus 690 -----------------------~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 746 (813)
++.+|||+|+++|.+|...|+.+.+... ...|+.+|
T Consensus 412 a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~---------------------~~~~~~~~ 470 (512)
T TIGR03689 412 ATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGG---------------------QVGLRIEH 470 (512)
T ss_pred hhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcC---------------------CcCcCHHH
Confidence 4568888888888888888888775321 23799999
Q ss_pred HHHHHhh
Q 003525 747 FEESMKY 753 (813)
Q Consensus 747 f~~a~~~ 753 (813)
+..|+..
T Consensus 471 l~~a~~~ 477 (512)
T TIGR03689 471 LLAAVLD 477 (512)
T ss_pred HHHHHHH
Confidence 9999865
No 41
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-38 Score=334.28 Aligned_cols=228 Identities=43% Similarity=0.737 Sum_probs=217.8
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhh
Q 003525 208 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS 287 (813)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~ 287 (813)
....++|+|+-|+++.++++.|++++ |+.|+.|.+||-+-|+||||+||||||||+|||++|++.+.+|++..|+++-.
T Consensus 297 ~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 297 QMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDE 375 (752)
T ss_pred hhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhh
Confidence 34578999999999999999999997 99999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCCCHH
Q 003525 288 KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA 367 (813)
Q Consensus 288 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~ 367 (813)
.++|....++|.+|+.|+.+.||||||||||++..++........+..++||+..|||+.++..|+||++||.|+.+|++
T Consensus 376 m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~A 455 (752)
T KOG0734|consen 376 MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKA 455 (752)
T ss_pred hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHH
Confidence 99999999999999999999999999999999999987666667788899999999999999999999999999999999
Q ss_pred hhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHHHHh
Q 003525 368 LRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIRE 436 (813)
Q Consensus 368 l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 436 (813)
|.||||||++|.+|.||...|.+||+.|+.++.+..++|+.-||+-|.||+|+||.+|+..|+..+...
T Consensus 456 L~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~d 524 (752)
T KOG0734|consen 456 LTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVD 524 (752)
T ss_pred hcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999877543
No 42
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=1.4e-37 Score=344.35 Aligned_cols=250 Identities=50% Similarity=0.843 Sum_probs=230.8
Q ss_pred cccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchh
Q 003525 480 VEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 559 (813)
Q Consensus 480 ~~~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~ 559 (813)
.+.|.+.|++|+|+++.++.|.+.+.+++.+++.|..+|+.+++|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCC
Q 003525 560 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDI 639 (813)
Q Consensus 560 ~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ 639 (813)
.+|+|+....++.+|+.++...|+||||||+|.++..|.....+.+....+.+.++|.+++++....+++||+|||+++.
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ 273 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDI 273 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 99999999999999999999999999999999999887654333344556788899999999877789999999999999
Q ss_pred CCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhHH
Q 003525 640 IDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIE 719 (813)
Q Consensus 640 ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~ 719 (813)
+|++++||||||+.|+|++|+.++|.+||+.++++..+..++++..+++.+.||||+||.++|++|++.|+++.
T Consensus 274 ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~------ 347 (364)
T TIGR01242 274 LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE------ 347 (364)
T ss_pred CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC------
Confidence 99999999999999999999999999999999999998888999999999999999999999999999998753
Q ss_pred HHHhhccCCcccccccccccccccHHHHHHHHhhc
Q 003525 720 RERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYA 754 (813)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~ 754 (813)
...|+.+||.+|++++
T Consensus 348 -------------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 -------------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred -------------------CCccCHHHHHHHHHHh
Confidence 2369999999999875
No 43
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-37 Score=304.72 Aligned_cols=230 Identities=44% Similarity=0.797 Sum_probs=214.1
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhh
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM 286 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~ 286 (813)
++.++++|.|+||..++++++++.+++|+.||+.|-+||+.||+|||||||||||||.+||++|+..+..|+.|-|+++.
T Consensus 169 eekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselv 248 (435)
T KOG0729|consen 169 EEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELV 248 (435)
T ss_pred ecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHH
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCC----CchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCC
Q 003525 287 SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREK----THGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN 362 (813)
Q Consensus 287 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~----~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~ 362 (813)
.+|+|+....++.+|+-++....||+|+||||++...+-. ..+++ ++..-.|.+.+|++..++++-|+.+||+|+
T Consensus 249 qkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnev-qrtmleli~qldgfdprgnikvlmatnrpd 327 (435)
T KOG0729|consen 249 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEV-QRTMLELINQLDGFDPRGNIKVLMATNRPD 327 (435)
T ss_pred HHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHH-HHHHHHHHHhccCCCCCCCeEEEeecCCCC
Confidence 9999999999999999999999999999999999876532 22334 344455778899999999999999999999
Q ss_pred CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHHHHhh
Q 003525 363 SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREK 437 (813)
Q Consensus 363 ~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~ 437 (813)
.+||+|.|+||+++.++|..|+.+.|..|+++|.+.+.+..++.++.+++.+.+-+|+++...|.+|.+.+++..
T Consensus 328 tldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairar 402 (435)
T KOG0729|consen 328 TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRAR 402 (435)
T ss_pred CcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998765
No 44
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-37 Score=335.19 Aligned_cols=228 Identities=43% Similarity=0.723 Sum_probs=221.3
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhhhhc
Q 003525 211 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLA 290 (813)
Q Consensus 211 ~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~~~~ 290 (813)
.+.|+||||+.++++.+++.+++|-+||.+|.+..+.-+.|||||||||||||.||.++|...+..++.|.|++++++|.
T Consensus 663 gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyI 742 (952)
T KOG0735|consen 663 GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYI 742 (952)
T ss_pred CCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCCCHHhhc
Q 003525 291 GESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRR 370 (813)
Q Consensus 291 g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r 370 (813)
|.+++++|.+|..|....|||||+||+|.++|+|+.....+..|+++||++.|||...-..|.++++|.+|+.|||+|.|
T Consensus 743 GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLR 822 (952)
T KOG0735|consen 743 GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLR 822 (952)
T ss_pred cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcC
Confidence 99999999999999999999999999999999999988899999999999999999998899999999999999999999
Q ss_pred cCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHHHHhhc
Q 003525 371 FGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKM 438 (813)
Q Consensus 371 ~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~ 438 (813)
+||+++.++.+.|++.+|++||+.+.....+.++++++.+|..|+||+|+|+..|+..|.+.++.+..
T Consensus 823 pGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l 890 (952)
T KOG0735|consen 823 PGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEIL 890 (952)
T ss_pred CCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988877654
No 45
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=6.5e-37 Score=354.67 Aligned_cols=247 Identities=43% Similarity=0.773 Sum_probs=227.1
Q ss_pred cCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhhh
Q 003525 482 VPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 561 (813)
Q Consensus 482 ~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~~ 561 (813)
...++|+|++|++++|+++.+.+.+ ++.++.|..++...++|+||+||||||||++|+++|++++.+|+.++++++...
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 3468999999999999999998765 677888999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCCC
Q 003525 562 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIID 641 (813)
Q Consensus 562 ~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 641 (813)
|+|.....++.+|+.|+...||||||||||.++..|+...+........++++||.+||++....+++||+|||+++.+|
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD 335 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILD 335 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhh
Confidence 99999999999999999999999999999999988876544444556789999999999998888999999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003525 642 PALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERE 721 (813)
Q Consensus 642 ~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~ 721 (813)
+|++||||||+.|+|++|+.++|.+||+.++++.++..++++..+|+.+.||||+||+++|++|+..|.++.
T Consensus 336 ~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~-------- 407 (638)
T CHL00176 336 AALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK-------- 407 (638)
T ss_pred hhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC--------
Confidence 999999999999999999999999999999999888889999999999999999999999999998887653
Q ss_pred HhhccCCcccccccccccccccHHHHHHHHhhc
Q 003525 722 RRKMENPEAMEEDEVDDVDEIKAVHFEESMKYA 754 (813)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~ 754 (813)
...|+.+||+.|+..+
T Consensus 408 -----------------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 408 -----------------KATITMKEIDTAIDRV 423 (638)
T ss_pred -----------------CCCcCHHHHHHHHHHH
Confidence 2369999999999876
No 46
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=5.5e-35 Score=322.50 Aligned_cols=246 Identities=43% Similarity=0.723 Sum_probs=223.8
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhh
Q 003525 208 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS 287 (813)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~ 287 (813)
..++++|+||||++.+++.|++.+++|+.+|++|+.+|+.+++++||+||||||||++++++|++++..++.+.++++..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCc---hhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCC
Q 003525 288 KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI 364 (813)
Q Consensus 288 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~l 364 (813)
.+.|+.+..++.+|..+....|+||||||+|.++.++.... +....+++.+++..++++....++.+|++||+++.+
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~L 297 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 297 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhC
Confidence 99999999999999999999999999999999987764322 223346677888889988877889999999999999
Q ss_pred CHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccccccc
Q 003525 365 DPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLE 444 (813)
Q Consensus 365 d~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 444 (813)
|+++.|+|||++.|+++.|+.++|.+||+.++.++.+..++++..++..++||+|+||.++|++|++.++++.
T Consensus 298 DpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~------- 370 (398)
T PTZ00454 298 DPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN------- 370 (398)
T ss_pred CHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 9999999999999999999999999999999999999889999999999999999999999999999988764
Q ss_pred chhhhHHhhhhccccchhhhcccccC
Q 003525 445 DETIDAEVLNSMAVTNEHFQTALGTS 470 (813)
Q Consensus 445 ~~~~~~~~~~~~~v~~~d~~~al~~~ 470 (813)
...++.+||.+|+..+
T Consensus 371 ----------~~~i~~~df~~A~~~v 386 (398)
T PTZ00454 371 ----------RYVILPKDFEKGYKTV 386 (398)
T ss_pred ----------CCccCHHHHHHHHHHH
Confidence 2357788888887664
No 47
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=2.1e-35 Score=346.66 Aligned_cols=248 Identities=42% Similarity=0.788 Sum_probs=226.3
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhhhc
Q 003525 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 562 (813)
Q Consensus 483 ~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~~~ 562 (813)
....|+++.|++..++++.+.+.+ ...+..+..++...++|++|+||||||||++++++|++++.+|+.++++++...|
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~ 225 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence 356799999999999999998877 4556777778888899999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCCCc
Q 003525 563 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDP 642 (813)
Q Consensus 563 vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~ 642 (813)
+|.....++.+|+.++...||||||||||.++..|+...+.......+++++||.+||++....+++||+|||+|+.||+
T Consensus 226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~ 305 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDP 305 (644)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCH
Confidence 99999999999999999999999999999999988764433344567899999999999998899999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003525 643 ALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERER 722 (813)
Q Consensus 643 allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~ 722 (813)
|++||||||+.|+|++||.++|.+||+.++++.++..++|+..+++.|.||||+||.++|++|+..|.++.
T Consensus 306 Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~--------- 376 (644)
T PRK10733 306 ALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN--------- 376 (644)
T ss_pred HHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999988753
Q ss_pred hhccCCcccccccccccccccHHHHHHHHhhccC
Q 003525 723 RKMENPEAMEEDEVDDVDEIKAVHFEESMKYARR 756 (813)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~ 756 (813)
...|+.+||++|+..+.+
T Consensus 377 ----------------~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 377 ----------------KRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred ----------------CCcccHHHHHHHHHHHhc
Confidence 236999999999987644
No 48
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=4.5e-35 Score=352.92 Aligned_cols=212 Identities=19% Similarity=0.315 Sum_probs=179.4
Q ss_pred CChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhhhc----------cc--------------
Q 003525 509 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW----------FG-------------- 564 (813)
Q Consensus 509 ~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~~~----------vg-------------- 564 (813)
.......++|+.+++|+||+||||||||+||||+|++++.||+.|.+++++++| +|
T Consensus 1617 ~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~ 1696 (2281)
T CHL00206 1617 HGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRD 1696 (2281)
T ss_pred cCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccc
Confidence 344556788999999999999999999999999999999999999999999765 22
Q ss_pred -----------------ccHH--HHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccC--
Q 003525 565 -----------------ESEA--NVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-- 623 (813)
Q Consensus 565 -----------------~se~--~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-- 623 (813)
+++. .++.+|+.|++++||||||||||+++... .....+++||++||+..
T Consensus 1697 ~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d---------s~~ltL~qLLneLDg~~~~ 1767 (2281)
T CHL00206 1697 LDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE---------SNYLSLGLLVNSLSRDCER 1767 (2281)
T ss_pred cchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc---------cceehHHHHHHHhcccccc
Confidence 2223 38999999999999999999999997641 11224899999999874
Q ss_pred -CCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHh--ccCCCCCc-ccHHHHHHHcCCCCHHHHH
Q 003525 624 -AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACL--RKSPISPD-VDLSALARYTHGFSGADIT 699 (813)
Q Consensus 624 -~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l--~~~~~~~~-~d~~~la~~~~g~sg~di~ 699 (813)
...+|+||||||+|+.|||||+||||||+.|+|+.|+..+|.+++...+ ++.++..+ +|+..+|+.|.|||||||.
T Consensus 1768 ~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLa 1847 (2281)
T CHL00206 1768 CSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLV 1847 (2281)
T ss_pred CCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHH
Confidence 3568999999999999999999999999999999999999999998654 45566543 6899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhccCCcccccccccccccccHHHHHHHHhhc
Q 003525 700 EVCQRACKYAIRENIEKDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYA 754 (813)
Q Consensus 700 ~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~ 754 (813)
++|++|+..|+++. ...|+..+|+.|+...
T Consensus 1848 nLvNEAaliAirq~-------------------------ks~Id~~~I~~Al~Rq 1877 (2281)
T CHL00206 1848 ALTNEALSISITQK-------------------------KSIIDTNTIRSALHRQ 1877 (2281)
T ss_pred HHHHHHHHHHHHcC-------------------------CCccCHHHHHHHHHHH
Confidence 99999999999875 1257778888887643
No 49
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-36 Score=347.46 Aligned_cols=266 Identities=37% Similarity=0.680 Sum_probs=227.5
Q ss_pred cCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhC-----CeEEEEecc
Q 003525 482 VPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGP 556 (813)
Q Consensus 482 ~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~-----~~~i~v~~~ 556 (813)
...+.|++|||++.++.+|++.|..|+.+++.|..+++.+++|+||+||||||||+.|+++|..+. ..|+.-+|+
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 357899999999999999999999999999999999999999999999999999999999999983 346777999
Q ss_pred chhhhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCC
Q 003525 557 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR 636 (813)
Q Consensus 557 ~l~~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~ 636 (813)
+.+++|+|+.|+..+.+|+.|+...|+|+||||||-+++.|.+.. ......++++||..|||+...+.|+||+||||
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq---Eqih~SIvSTLLaLmdGldsRgqVvvigATnR 415 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ---EQIHASIVSTLLALMDGLDSRGQVVVIGATNR 415 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH---HHhhhhHHHHHHHhccCCCCCCceEEEcccCC
Confidence 999999999999999999999999999999999999999986543 34567899999999999999999999999999
Q ss_pred CCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 003525 637 PDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEVCQRACKYAIRENIE 715 (813)
Q Consensus 637 ~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~d~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~ 715 (813)
|+.+||||.||||||+.+|||+|+.+.|.+|+.++.++-.-. ...-+..||+.+.||-||||+.+|.+|++.++++...
T Consensus 416 pda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~P 495 (1080)
T KOG0732|consen 416 PDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFP 495 (1080)
T ss_pred ccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccC
Confidence 999999999999999999999999999999999999875411 2233688999999999999999999999999988644
Q ss_pred HhHHHHHhhccCCcccccccccccccccHHHHHHHHhhccCCCC
Q 003525 716 KDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARRSVS 759 (813)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~~ 759 (813)
.......... . + .....|..+||..|+.+.-|+.+
T Consensus 496 q~y~s~~kl~-----~---d-~~~ikV~~~~f~~A~~~i~ps~~ 530 (1080)
T KOG0732|consen 496 QIYSSSDKLL-----I---D-VALIKVEVRDFVEAMSRITPSSR 530 (1080)
T ss_pred eeeccccccc-----c---c-chhhhhhhHhhhhhhhccCCCCC
Confidence 3211000000 0 0 01123788888888887766543
No 50
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-35 Score=303.23 Aligned_cols=229 Identities=45% Similarity=0.750 Sum_probs=213.4
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhhhhhC-CCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhhh
Q 003525 210 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIG-VKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSK 288 (813)
Q Consensus 210 ~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~-i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~~ 288 (813)
-.++|+||||++.+++++++.+-+|+++|++|..-+ ..+++||||+||||||||++|+++|++.+..|+.|.++.+.++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 467999999999999999999999999999996433 4789999999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCc--EEEEEecCCCCCCCH
Q 003525 289 LAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH--VIVMGATNRPNSIDP 366 (813)
Q Consensus 289 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~--vivi~atn~~~~ld~ 366 (813)
|.|+.++.++.+|.-|..-+|+||||||+|.++..++....+....+..++....||+....+ |+|+|+||+|.++|.
T Consensus 167 WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDe 246 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDE 246 (386)
T ss_pred hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHH
Confidence 999999999999999999999999999999999998666667777888999999999987655 999999999999999
Q ss_pred HhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccc
Q 003525 367 ALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDV 440 (813)
Q Consensus 367 ~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~ 440 (813)
++.| |+.+.++++.|+..+|..||+..+++-.+.+++|+..+|..|+||+|.||..+|+.|+...++.....
T Consensus 247 AiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~ 318 (386)
T KOG0737|consen 247 AIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVS 318 (386)
T ss_pred HHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHh
Confidence 9999 99999999999999999999999999999999999999999999999999999999999888876543
No 51
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-34 Score=327.48 Aligned_cols=228 Identities=46% Similarity=0.794 Sum_probs=214.2
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhhhh
Q 003525 210 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKL 289 (813)
Q Consensus 210 ~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~~~ 289 (813)
..++|.|+.|+++.+++|.|++.. |.+|+.|..+|...|+|+||+||||||||.||+++|++.+.+|+.++|++++..+
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 458999999999999999999997 9999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCC---C-CchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCCC
Q 003525 290 AGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKRE---K-THGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID 365 (813)
Q Consensus 290 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~---~-~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld 365 (813)
.|....+++.+|+.++.+.|||+|+||||++...++ . ..++-.+...+||+..||++.....|+++++||+++.+|
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 999999999999999999999999999999999884 2 233455677899999999999998999999999999999
Q ss_pred HHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCCCchHHHHHHHHHHHHHHHHhhc
Q 003525 366 PALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKM 438 (813)
Q Consensus 366 ~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~ 438 (813)
++|.|+|||++.|.++.|+...|.+|++.|++...+. ++.++..+|..|+||+|+||..+|.+|+..+.++..
T Consensus 465 ~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~ 538 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL 538 (774)
T ss_pred HHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc
Confidence 9999999999999999999999999999999999885 778898999999999999999999999999988754
No 52
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-34 Score=290.54 Aligned_cols=228 Identities=39% Similarity=0.692 Sum_probs=210.0
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhh
Q 003525 208 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS 287 (813)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~ 287 (813)
+-+.+.|+|+.|++..++.|++.+-+|++.|++|.. +..|=++||||||||||||.||+++|.+.+..|+.|+.+++++
T Consensus 126 EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvS 204 (439)
T KOG0739|consen 126 EKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 204 (439)
T ss_pred cCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHH
Confidence 347899999999999999999999999999999975 3456789999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhcccc-CCcEEEEEecCCCCCCCH
Q 003525 288 KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKS-RAHVIVMGATNRPNSIDP 366 (813)
Q Consensus 288 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~-~~~vivi~atn~~~~ld~ 366 (813)
+|.|++++.++.+|+-|+.+.|+||||||||.+|..++...++..+|+...++-.|.+... ...|+|+|+||-|+.+|.
T Consensus 205 KWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDs 284 (439)
T KOG0739|consen 205 KWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDS 284 (439)
T ss_pred HHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHH
Confidence 9999999999999999999999999999999999999988888999999999999988765 457999999999999999
Q ss_pred HhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcc-ccchhhHHHHhhcCCCchHHHHHHHHHHHHHHHHhhc
Q 003525 367 ALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKM 438 (813)
Q Consensus 367 ~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~ 438 (813)
++|| ||++.|++|.|+...|..+++.|+...+. ..+.++..++..|+||+|+||..+++.|.++.+++..
T Consensus 285 AIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvq 355 (439)
T KOG0739|consen 285 AIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQ 355 (439)
T ss_pred HHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhh
Confidence 9999 99999999999999999999999877653 3456899999999999999999999999988877643
No 53
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.6e-33 Score=338.18 Aligned_cols=267 Identities=49% Similarity=0.840 Sum_probs=236.3
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhhh
Q 003525 209 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSK 288 (813)
Q Consensus 209 ~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~~ 288 (813)
.+.+.|++|||++..++.|++.+.+|+.++++++.+++.++.++|||||||||||++|+++|++++.+++.++++++.++
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCC-chhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCCCHH
Q 003525 289 LAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKT-HGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA 367 (813)
Q Consensus 289 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~-~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~ 367 (813)
|.|+++..++.+|+.+....|+||||||+|.+++.++.. .....++++++|+..|+++....+++||++||+++.||++
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~a 606 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPA 606 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHh
Confidence 999999999999999999999999999999999887643 2346688999999999999888899999999999999999
Q ss_pred hhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcccccccc-h
Q 003525 368 LRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLED-E 446 (813)
Q Consensus 368 l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~-~ 446 (813)
+.|+|||++.++++.|+.++|.+||+.+.+++++..++++..++..++||+|+||..+|++|++.++++......... .
T Consensus 607 llRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~ 686 (733)
T TIGR01243 607 LLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLE 686 (733)
T ss_pred hcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhh
Confidence 999999999999999999999999999999999988899999999999999999999999999998886543221000 0
Q ss_pred hhhHHhhhhccccchhhhcccccCCCCcc
Q 003525 447 TIDAEVLNSMAVTNEHFQTALGTSNPSAL 475 (813)
Q Consensus 447 ~~~~~~~~~~~v~~~d~~~al~~~~p~~~ 475 (813)
....+......++.+||..++..+.|+..
T Consensus 687 ~~~~~~~~~~~i~~~~f~~al~~~~ps~~ 715 (733)
T TIGR01243 687 VGEEEFLKDLKVEMRHFLEALKKVKPSVS 715 (733)
T ss_pred cccccccccCcccHHHHHHHHHHcCCCCC
Confidence 00001112356889999999998887743
No 54
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=2.2e-33 Score=311.24 Aligned_cols=246 Identities=48% Similarity=0.782 Sum_probs=220.9
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhh
Q 003525 208 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS 287 (813)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~ 287 (813)
..+.++|+||||++.++++|++++.+|+.+|++|+++++.++.++||+||||||||++|+++|++++..++.+.++++.+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCch---hHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCC
Q 003525 288 KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHG---EVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI 364 (813)
Q Consensus 288 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~l 364 (813)
.+.|+....++.+|..+....|+|+||||+|.++.++..... ....+.+..++..++++.....+.||++||+++.+
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 999999999999999999999999999999999987643221 11234456677888888777789999999999999
Q ss_pred CHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccccccc
Q 003525 365 DPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLE 444 (813)
Q Consensus 365 d~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 444 (813)
|+++.|+|||++.|+++.|+.++|.+||+.++.++.+..++++..++..++||+++|+.++|++|++.++++.
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~------- 408 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER------- 408 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc-------
Confidence 9999999999999999999999999999999999999888999999999999999999999999999988764
Q ss_pred chhhhHHhhhhccccchhhhcccccC
Q 003525 445 DETIDAEVLNSMAVTNEHFQTALGTS 470 (813)
Q Consensus 445 ~~~~~~~~~~~~~v~~~d~~~al~~~ 470 (813)
...++.+||.+|+..+
T Consensus 409 ----------r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 409 ----------RMKVTQADFRKAKEKV 424 (438)
T ss_pred ----------CCccCHHHHHHHHHHH
Confidence 2347778888777654
No 55
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=9.8e-34 Score=297.58 Aligned_cols=219 Identities=20% Similarity=0.253 Sum_probs=173.1
Q ss_pred ccccc-cccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhhhccc
Q 003525 486 SWEDI-GGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 564 (813)
Q Consensus 486 ~~~~i-~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~~~vg 564 (813)
+|+++ +|+--.+..+...+.... ...+...++++|.+++||||||||||++|+++|++++.+|+.++++++.++|+|
T Consensus 113 ~f~~~~g~~~~~p~f~dk~~~hi~--kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG 190 (413)
T PLN00020 113 SFDNLVGGYYIAPAFMDKVAVHIA--KNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG 190 (413)
T ss_pred chhhhcCccccCHHHHHHHHHHHH--hhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC
Confidence 44555 555544444443332211 112223578999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHh-----CCCeEEEEecchhhhhccCCCCCCCCchHHHHH-HHHHHHHhcc------------CCCC
Q 003525 565 ESEANVREIFDKARQ-----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVL-NQLLTEMDGM------------NAKK 626 (813)
Q Consensus 565 ~se~~i~~vF~~a~~-----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl-~~lL~~ld~~------------~~~~ 626 (813)
++|++++++|+.|+. ..||||||||||++++.|+... ....++++ .+||++||+. ....
T Consensus 191 EsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~---~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~ 267 (413)
T PLN00020 191 EPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQ---YTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIP 267 (413)
T ss_pred cHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCC---cchHHHHHHHHHHHHhcCCccccccccccccccCC
Confidence 999999999999975 4699999999999999987422 23445555 8999999874 2356
Q ss_pred cEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCC----CCHHHHHHHH
Q 003525 627 TVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHG----FSGADITEVC 702 (813)
Q Consensus 627 ~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g----~sg~di~~l~ 702 (813)
+|+||+|||+|+.|||+|+||||||+.+ +.|+.++|.+||+.++++.+++ ..|+..|+..+.| |+||--..+.
T Consensus 268 ~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~y 344 (413)
T PLN00020 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVY 344 (413)
T ss_pred CceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHH
Confidence 7999999999999999999999999864 5899999999999999998887 4788888888766 6676655555
Q ss_pred HHHHHHHHHH
Q 003525 703 QRACKYAIRE 712 (813)
Q Consensus 703 ~~a~~~a~~~ 712 (813)
.++...-+.+
T Consensus 345 d~~v~~~i~~ 354 (413)
T PLN00020 345 DDEVRKWIAE 354 (413)
T ss_pred HHHHHHHHHH
Confidence 5555444443
No 56
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=3.6e-33 Score=310.12 Aligned_cols=250 Identities=50% Similarity=0.828 Sum_probs=224.3
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhh
Q 003525 208 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS 287 (813)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~ 287 (813)
..+++.|++|||++++++.+++++.+|+.+|++|+.+|+.++.+|||+||||||||++|+++|++++..++.+++.++..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCc---hhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCC
Q 003525 288 KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI 364 (813)
Q Consensus 288 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~l 364 (813)
.+.|+.+..++.+|+.+....|++|||||+|.++.++.... .....+.+.+++..++++....++.||++||+++.+
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~l 283 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDIL 283 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhC
Confidence 99999999999999999999999999999999987765322 112234556677778887777789999999999999
Q ss_pred CHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccccccc
Q 003525 365 DPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLE 444 (813)
Q Consensus 365 d~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 444 (813)
|+++.|++||++.++++.|+.++|.+||+.+++++.+..+.++..++..++||+++|+.++|++|++.++++.
T Consensus 284 d~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~------- 356 (389)
T PRK03992 284 DPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD------- 356 (389)
T ss_pred CHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 9999999999999999999999999999999999988888899999999999999999999999999888753
Q ss_pred chhhhHHhhhhccccchhhhcccccCCCCc
Q 003525 445 DETIDAEVLNSMAVTNEHFQTALGTSNPSA 474 (813)
Q Consensus 445 ~~~~~~~~~~~~~v~~~d~~~al~~~~p~~ 474 (813)
...++.+||.+|+..+.++.
T Consensus 357 ----------~~~i~~~d~~~A~~~~~~~~ 376 (389)
T PRK03992 357 ----------RTEVTMEDFLKAIEKVMGKE 376 (389)
T ss_pred ----------CCCcCHHHHHHHHHHHhccc
Confidence 23478889999988776654
No 57
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-33 Score=319.95 Aligned_cols=249 Identities=51% Similarity=0.833 Sum_probs=232.0
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhhh
Q 003525 209 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSK 288 (813)
Q Consensus 209 ~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~~ 288 (813)
.+.++|.++||++..++.+++.+.+|+.+++.|...++.++.++||+||||||||+||+++|.+++.+|+.+.+++++++
T Consensus 236 ~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk 315 (494)
T COG0464 236 DEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK 315 (494)
T ss_pred CCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCCCHHh
Q 003525 289 LAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPAL 368 (813)
Q Consensus 289 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l 368 (813)
|.|+++++++.+|+.|+...||||||||+|.+++.++...+....+++.+|+..|+++.....|+||++||+++.+|+++
T Consensus 316 ~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~ 395 (494)
T COG0464 316 WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPAL 395 (494)
T ss_pred ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhh
Confidence 99999999999999999999999999999999999987666666899999999999999999999999999999999999
Q ss_pred hccCCcceEEEcCCCCHHHHHHHHHHHhcCCc--cccchhhHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcccccccch
Q 003525 369 RRFGRFDREIDIGVPDEVGRLEILRIHTKNMK--LAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLEDE 446 (813)
Q Consensus 369 ~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~--l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~ 446 (813)
.|+|||+..++++.|+..+|.+|++.+++... +..++++..++..+.||+|+|+..+|++|.+.++++..
T Consensus 396 lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~-------- 467 (494)
T COG0464 396 LRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR-------- 467 (494)
T ss_pred cccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc--------
Confidence 99999999999999999999999999998554 46788999999999999999999999999998887642
Q ss_pred hhhHHhhhhccccchhhhcccccCCCC
Q 003525 447 TIDAEVLNSMAVTNEHFQTALGTSNPS 473 (813)
Q Consensus 447 ~~~~~~~~~~~v~~~d~~~al~~~~p~ 473 (813)
...++..||..++....|+
T Consensus 468 --------~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 468 --------RREVTLDDFLDALKKIKPS 486 (494)
T ss_pred --------cCCccHHHHHHHHHhcCCC
Confidence 2357888999998887665
No 58
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=6.5e-32 Score=323.02 Aligned_cols=443 Identities=22% Similarity=0.329 Sum_probs=297.7
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHh----------CCeEEE
Q 003525 210 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFL 279 (813)
Q Consensus 210 ~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l----------~~~~v~ 279 (813)
.+-.++++.|.++++.++.+++.. ....+++|+||||||||++++.||..+ +..++.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 445678899999999887766643 235689999999999999999999987 667889
Q ss_pred Eechhhh--hhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEe
Q 003525 280 INGPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGA 357 (813)
Q Consensus 280 v~~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~a 357 (813)
+++..+. .++.|+.+++++.+|+.+....++||||||+|.++..+....+..+ +.+.|...+ .++.+.+||+
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~--~~~~L~~~l----~~g~i~~Iga 317 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMD--ASNLLKPAL----SSGKLRCIGS 317 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHH--HHHHHHHHH----hCCCeEEEEe
Confidence 9988887 4688999999999999998778899999999999876543222221 223344443 3568999999
Q ss_pred cCCCC-----CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCC----cc-ccchhhHHHHhhcCCCchHH-----H
Q 003525 358 TNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNM----KL-AEDVDLERVAKDTHGYVGSD-----L 422 (813)
Q Consensus 358 tn~~~-----~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~----~l-~~~~~l~~la~~t~g~~~~d-----l 422 (813)
|+..+ ..|+++.| ||. .++++.|+.+++.+||+.....+ .+ ..+..+..++..++.|.+.. .
T Consensus 318 Tt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~ka 394 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKA 394 (731)
T ss_pred cCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHH
Confidence 98633 57999999 896 69999999999999999655432 11 23445677777777776432 2
Q ss_pred HHHHHHHHHHHHHhhcccccccchhhhHHhhhhccccchhhhcccccCCCCccc-------ccccccCCcccccccccch
Q 003525 423 AALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALR-------ETVVEVPNVSWEDIGGLDN 495 (813)
Q Consensus 423 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~p~~~~-------~~~~~~~~~~~~~i~g~~~ 495 (813)
..++.+|+.....+... .....++.+++..++.....-... +........-...|.|+++
T Consensus 395 i~lld~a~a~~~~~~~~-------------~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ 461 (731)
T TIGR02639 395 IDVIDEAGASFRLRPKA-------------KKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDE 461 (731)
T ss_pred HHHHHHhhhhhhcCccc-------------ccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHH
Confidence 34455554321110000 011235555555554432110000 0000111111234556666
Q ss_pred hhhhhhccccCCCCChhhhhhhcCC---CCc-eeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhh-----------
Q 003525 496 VKRELQETVQYPVEHPEKFEKFGMS---PSK-GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT----------- 560 (813)
Q Consensus 496 ~k~~L~~~i~~~~~~~~~~~~~~~~---~~~-gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~----------- 560 (813)
+++.+.+.+... +.|+. .|. .++|+||+|||||+||+++|..++.+++.++++++..
T Consensus 462 ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~ 533 (731)
T TIGR02639 462 AIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAP 533 (731)
T ss_pred HHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCC
Confidence 555555443321 22332 133 4899999999999999999999999999999988643
Q ss_pred -hcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccC---------CCCcEEE
Q 003525 561 -MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN---------AKKTVFI 630 (813)
Q Consensus 561 -~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~---------~~~~v~v 630 (813)
.|+|..+ .+.+.+..+..+.+|+||||||.+. ..+.+.||+.||... +..+++|
T Consensus 534 ~gyvg~~~--~~~l~~~~~~~p~~VvllDEieka~--------------~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~ii 597 (731)
T TIGR02639 534 PGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKAH--------------PDIYNILLQVMDYATLTDNNGRKADFRNVIL 597 (731)
T ss_pred CCCcccch--hhHHHHHHHhCCCeEEEEechhhcC--------------HHHHHHHHHhhccCeeecCCCcccCCCCCEE
Confidence 2334322 2345555666778999999999863 457888999988641 2357889
Q ss_pred EeccCCCC-------------------------CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccC-------CCC
Q 003525 631 IGATNRPD-------------------------IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS-------PIS 678 (813)
Q Consensus 631 i~aTn~~~-------------------------~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~-------~~~ 678 (813)
|+|||... .+.|.++. |||.+|.|.+.+.++..+|++..+++. ++.
T Consensus 598 i~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~ 675 (731)
T TIGR02639 598 IMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIK 675 (731)
T ss_pred EECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 99998742 25667775 999999999999999999999887532 222
Q ss_pred Cccc---HHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH
Q 003525 679 PDVD---LSALARY--THGFSGADITEVCQRACKYAIREN 713 (813)
Q Consensus 679 ~~~d---~~~la~~--~~g~sg~di~~l~~~a~~~a~~~~ 713 (813)
-.++ ++.|++. ...|..+.|+.+++.....++-+.
T Consensus 676 l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~ 715 (731)
T TIGR02639 676 LELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDE 715 (731)
T ss_pred EEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHH
Confidence 1122 4556653 345667788888887776665544
No 59
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-31 Score=311.78 Aligned_cols=446 Identities=21% Similarity=0.307 Sum_probs=291.1
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHh----------CCeEEEEec
Q 003525 213 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFLING 282 (813)
Q Consensus 213 ~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l----------~~~~v~v~~ 282 (813)
.++.+.|.++++.++.+++.. ....++||+||||||||++++.++..+ +..++.++.
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 466799999998888876653 235678999999999999999999864 344566665
Q ss_pred hhhh--hhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCC
Q 003525 283 PEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNR 360 (813)
Q Consensus 283 ~~l~--~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~ 360 (813)
..++ ..+.|+.+.+++.++..+....+.||||||+|.++..+....+.. .+.+.|.. +..++.+.+|++|+.
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~--d~~nlLkp----~L~~g~i~vIgATt~ 324 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQV--DAANLIKP----LLSSGKIRVIGSTTY 324 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHH--HHHHHHHH----HHhCCCeEEEecCCh
Confidence 5555 356788999999999998888889999999999987764322222 12222333 334678999999997
Q ss_pred CC-----CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccch-----hhHHHHhhcCCC-----chHHHHHH
Q 003525 361 PN-----SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDV-----DLERVAKDTHGY-----VGSDLAAL 425 (813)
Q Consensus 361 ~~-----~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~-----~l~~la~~t~g~-----~~~dl~~l 425 (813)
.+ ..|+++.| ||. .|.++.|+.+++.+||+.+..++....++ .+...+..+..| .+.....+
T Consensus 325 ~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidl 401 (758)
T PRK11034 325 QEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDV 401 (758)
T ss_pred HHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHH
Confidence 64 57999998 995 79999999999999999876655443332 233334434443 33355667
Q ss_pred HHHHHHHHHHhhcccccccchhhhHHhhhhccccchhhhcccccCC--CCc-cc----ccccccCCcccccccccchhhh
Q 003525 426 CTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGTSN--PSA-LR----ETVVEVPNVSWEDIGGLDNVKR 498 (813)
Q Consensus 426 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~--p~~-~~----~~~~~~~~~~~~~i~g~~~~k~ 498 (813)
+.+|+........ . . ....++..++...+.... |.. +. +........--..|.|++++++
T Consensus 402 ldea~a~~~~~~~---~--~--------~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~ 468 (758)
T PRK11034 402 IDEAGARARLMPV---S--K--------RKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIE 468 (758)
T ss_pred HHHHHHhhccCcc---c--c--------cccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHH
Confidence 7777653211000 0 0 011233333333322211 000 00 0000111111234788999888
Q ss_pred hhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhh-----hcccccHH-----
Q 003525 499 ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-----MWFGESEA----- 568 (813)
Q Consensus 499 ~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~-----~~vg~se~----- 568 (813)
.|.+.+...... +.. ..+|...+||+||||||||++|+++|..++.+|+.++++++.. +++|....
T Consensus 469 ~l~~~i~~~~~g---l~~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~ 544 (758)
T PRK11034 469 ALTEAIKMSRAG---LGH-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFD 544 (758)
T ss_pred HHHHHHHHHhcc---ccC-CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCccccc
Confidence 888776532110 000 1123345999999999999999999999999999999887642 33332211
Q ss_pred HHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccC---------CCCcEEEEeccCCC--
Q 003525 569 NVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN---------AKKTVFIIGATNRP-- 637 (813)
Q Consensus 569 ~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~---------~~~~v~vi~aTn~~-- 637 (813)
.-..+.+..+..+.+|+||||||.+. ..+.+.||+.||... ...++++|+|||.-
T Consensus 545 ~~g~L~~~v~~~p~sVlllDEieka~--------------~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~ 610 (758)
T PRK11034 545 QGGLLTDAVIKHPHAVLLLDEIEKAH--------------PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVR 610 (758)
T ss_pred ccchHHHHHHhCCCcEEEeccHhhhh--------------HHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHH
Confidence 11234444556667999999999973 458899999998531 12578999999932
Q ss_pred -----------------------CCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcc-------CCCCCccc---HH
Q 003525 638 -----------------------DIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRK-------SPISPDVD---LS 684 (813)
Q Consensus 638 -----------------------~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~-------~~~~~~~d---~~ 684 (813)
..+.|.++. |+|.+|.|++++.++..+|+...+.+ .++.-.++ ++
T Consensus 611 ~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~ 688 (758)
T PRK11034 611 ETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARD 688 (758)
T ss_pred HHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHH
Confidence 125678886 99999999999999999999877642 23332222 34
Q ss_pred HHHHHc--CCCCHHHHHHHHHHHHHHHHHHH
Q 003525 685 ALARYT--HGFSGADITEVCQRACKYAIREN 713 (813)
Q Consensus 685 ~la~~~--~g~sg~di~~l~~~a~~~a~~~~ 713 (813)
.|++.. ..|-.+.|+.+++.-....+-+.
T Consensus 689 ~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~ 719 (758)
T PRK11034 689 WLAEKGYDRAMGARPMARVIQDNLKKPLANE 719 (758)
T ss_pred HHHHhCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 455432 33456788888877766666544
No 60
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-32 Score=307.05 Aligned_cols=229 Identities=47% Similarity=0.786 Sum_probs=216.1
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhhh
Q 003525 209 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSK 288 (813)
Q Consensus 209 ~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~~ 288 (813)
...++|.|+.|.++.++.+.++++. ++.|..|..+|..-|+||||+||||||||+|||++|++.+.+|+.+++++++..
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 3568999999999999999999997 899999999999999999999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCC---chhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCCC
Q 003525 289 LAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID 365 (813)
Q Consensus 289 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld 365 (813)
++|-...++|.+|.+++.+.|||+||||||++..+++.. ..+..+...+||+..||++..+..|+++++||+|+-+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 999999999999999999999999999999999988633 33445678899999999999888999999999999999
Q ss_pred HHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHHHHhhc
Q 003525 366 PALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKM 438 (813)
Q Consensus 366 ~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~ 438 (813)
++|.|+|||++.+.++.||...|.+|++.|.++.++..++++..+|+.|.||+|+|+..++.+|++.+.++..
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~ 375 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNK 375 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998887654
No 61
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.97 E-value=2e-30 Score=287.31 Aligned_cols=245 Identities=53% Similarity=0.866 Sum_probs=216.6
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhh
Q 003525 208 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS 287 (813)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~ 287 (813)
..+.+.|++|+|+++++++|++.+.+|+.+|+.+..+|+.+++++||+||||||||++++++++.++..++.+.+.++..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCc---hhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCC
Q 003525 288 KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI 364 (813)
Q Consensus 288 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~l 364 (813)
.+.|+....++.+|+.+....|++|||||+|.++..+.... +....+.+.+++..++++....++.+|++||+++.+
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~l 274 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDIL 274 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhC
Confidence 99999889999999999999999999999999987654322 112234456667777777666789999999999999
Q ss_pred CHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccccccc
Q 003525 365 DPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLE 444 (813)
Q Consensus 365 d~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 444 (813)
|+++.+++||++.++++.|+.++|.+||+.++.++.+..+.++..++..++||+|+|+.++|++|++.++++.
T Consensus 275 d~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~------- 347 (364)
T TIGR01242 275 DPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE------- 347 (364)
T ss_pred ChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-------
Confidence 9999999999999999999999999999999999888888899999999999999999999999999988754
Q ss_pred chhhhHHhhhhccccchhhhccccc
Q 003525 445 DETIDAEVLNSMAVTNEHFQTALGT 469 (813)
Q Consensus 445 ~~~~~~~~~~~~~v~~~d~~~al~~ 469 (813)
...++.+||.+|+..
T Consensus 348 ----------~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 348 ----------RDYVTMDDFIKAVEK 362 (364)
T ss_pred ----------CCccCHHHHHHHHHH
Confidence 234677777777653
No 62
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.97 E-value=1.3e-30 Score=293.41 Aligned_cols=242 Identities=24% Similarity=0.402 Sum_probs=209.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhhhh
Q 003525 210 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKL 289 (813)
Q Consensus 210 ~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~~~ 289 (813)
+..+|++|||++..++.+++.... +.....++|+.+++||||+||||||||++|+++|++++.+++.+++..+.+.+
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 467899999999999888765432 23345678999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCC-CchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCCCHHh
Q 003525 290 AGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREK-THGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPAL 368 (813)
Q Consensus 290 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~-~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l 368 (813)
.|+++.+++.+|+.+....||||||||||.++.++.. ..+....++..+++++|+.. ..+|+||+|||+++.+|+++
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~--~~~V~vIaTTN~~~~Ld~al 377 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK--KSPVFVVATANNIDLLPLEI 377 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC--CCceEEEEecCChhhCCHHH
Confidence 9999999999999999999999999999999875432 33455678888999988853 45799999999999999999
Q ss_pred hccCCcceEEEcCCCCHHHHHHHHHHHhcCCcc--ccchhhHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcccccccch
Q 003525 369 RRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL--AEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLEDE 446 (813)
Q Consensus 369 ~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l--~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~ 446 (813)
.|+|||++.++++.|+.++|.+||+.++++... ..+.++..++..|+||+|+||.++|.+|...+..+.
T Consensus 378 lR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~--------- 448 (489)
T CHL00195 378 LRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK--------- 448 (489)
T ss_pred hCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC---------
Confidence 999999999999999999999999999887643 246789999999999999999999999988776432
Q ss_pred hhhHHhhhhccccchhhhcccccCCCCc
Q 003525 447 TIDAEVLNSMAVTNEHFQTALGTSNPSA 474 (813)
Q Consensus 447 ~~~~~~~~~~~v~~~d~~~al~~~~p~~ 474 (813)
..++.+||..++..+.|.+
T Consensus 449 ---------~~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 449 ---------REFTTDDILLALKQFIPLA 467 (489)
T ss_pred ---------CCcCHHHHHHHHHhcCCCc
Confidence 2367889999998888864
No 63
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=2.1e-30 Score=298.00 Aligned_cols=244 Identities=45% Similarity=0.752 Sum_probs=218.5
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhhh
Q 003525 209 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSK 288 (813)
Q Consensus 209 ~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~~ 288 (813)
.+.++|+|++|+++.++++++++.. +.+++.+.+++..+++++||+||||||||+++++||++++.+++.+++.++.+.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 4678999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCC---chhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCCC
Q 003525 289 LAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID 365 (813)
Q Consensus 289 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld 365 (813)
+.|.....++.+|+.+....|+||||||+|.++.+++.. ......+++.+|+..|+++.....++||++||+++.+|
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld 207 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLD 207 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcC
Confidence 999999999999999999999999999999999876542 12334577889999999998888899999999999999
Q ss_pred HHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcccccccc
Q 003525 366 PALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLED 445 (813)
Q Consensus 366 ~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~ 445 (813)
++++|++||++.++++.|+.++|.+||+.++++..+..+.++..++..+.||+++|+..+|++|+..+.++.
T Consensus 208 ~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~-------- 279 (495)
T TIGR01241 208 PALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN-------- 279 (495)
T ss_pred HHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC--------
Confidence 999999999999999999999999999999988877778889999999999999999999999988766543
Q ss_pred hhhhHHhhhhccccchhhhcccccC
Q 003525 446 ETIDAEVLNSMAVTNEHFQTALGTS 470 (813)
Q Consensus 446 ~~~~~~~~~~~~v~~~d~~~al~~~ 470 (813)
...++.+++..++...
T Consensus 280 ---------~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 280 ---------KTEITMNDIEEAIDRV 295 (495)
T ss_pred ---------CCCCCHHHHHHHHHHH
Confidence 1236667777776654
No 64
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.2e-31 Score=268.87 Aligned_cols=230 Identities=43% Similarity=0.758 Sum_probs=207.2
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhh
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM 286 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~ 286 (813)
+...+++|+++||+-.++..+++.+++|+..|++|.++||.+|.+++||||||+|||.+++++|..++..++.+..+.+.
T Consensus 124 e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv 203 (388)
T KOG0651|consen 124 EDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV 203 (388)
T ss_pred cCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhh
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHH---HHHHhhccccCCcEEEEEecCCCCC
Q 003525 287 SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ---LLTLMDGLKSRAHVIVMGATNRPNS 363 (813)
Q Consensus 287 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~---Ll~~ld~~~~~~~vivi~atn~~~~ 363 (813)
+++.|++...+|..|..|....||++|+||||++...+.......++.+... |++.|+++....+|-+|.|||+|+.
T Consensus 204 ~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdt 283 (388)
T KOG0651|consen 204 DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDT 283 (388)
T ss_pred hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccc
Confidence 9999999999999999999999999999999999887743332233344444 4556677777789999999999999
Q ss_pred CCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHHHHh
Q 003525 364 IDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIRE 436 (813)
Q Consensus 364 ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 436 (813)
|+|+|.|+||+++.+++|.|++..|..|++.|...+......+.+.+....+||.|+|+...|.+|.+.+++.
T Consensus 284 LdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~ 356 (388)
T KOG0651|consen 284 LDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPE 356 (388)
T ss_pred cchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccch
Confidence 9999999999999999999999999999999988887777778899999999999999999999998766554
No 65
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=5.3e-30 Score=287.63 Aligned_cols=222 Identities=43% Similarity=0.707 Sum_probs=195.4
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe----------
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~---------- 276 (813)
+..++++|++|||++++++++++.+.+|+.||++|..+++.+++++|||||||||||++++++|+.++..
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 3457899999999999999999999999999999999999999999999999999999999999998543
Q ss_pred EEEEechhhhhhhcchhHHHHHHHHHHHHhc----CCcEEEeccchhccCCCCCC-chhHHHHHHHHHHHHhhccccCCc
Q 003525 277 FFLINGPEIMSKLAGESESNLRKAFEEAEKN----APSIIFIDELDSIAPKREKT-HGEVERRIVSQLLTLMDGLKSRAH 351 (813)
Q Consensus 277 ~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~----~p~il~iDEid~l~~~~~~~-~~~~~~~v~~~Ll~~ld~~~~~~~ 351 (813)
++.+.++++.+++.|+++..++.+|+.+... .|+|+||||+|.++.+++.. .++.+.+++.+|++.|+++....+
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ 333 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDN 333 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCc
Confidence 5667788899999999999999999988763 69999999999999887643 356678889999999999988889
Q ss_pred EEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcC-CccccchhhHHHHhhcCCCchHHHHHHHHHHH
Q 003525 352 VIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKN-MKLAEDVDLERVAKDTHGYVGSDLAALCTEAA 430 (813)
Q Consensus 352 vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~-~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~ 430 (813)
+++|++||+++.||+++.|+|||+..|+++.|+.++|.+||+.++.. +++. ..+..+.|+.++++.++++++.
T Consensus 334 ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~------~~l~~~~g~~~a~~~al~~~av 407 (512)
T TIGR03689 334 VIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLD------ADLAEFDGDREATAAALIQRAV 407 (512)
T ss_pred eEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCch------HHHHHhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988754 3331 2234578999999999999986
Q ss_pred HHHH
Q 003525 431 LQCI 434 (813)
Q Consensus 431 ~~~~ 434 (813)
...+
T Consensus 408 ~~~~ 411 (512)
T TIGR03689 408 DHLY 411 (512)
T ss_pred HHHh
Confidence 5444
No 66
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=2.8e-29 Score=291.17 Aligned_cols=243 Identities=41% Similarity=0.728 Sum_probs=215.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhhhh
Q 003525 210 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKL 289 (813)
Q Consensus 210 ~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~~~ 289 (813)
..++|+|++|+++.++.+.+++.. +.+++.+..++...++++||+||||||||++|+++|++.+.+++.++++++...+
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 467999999999999999999886 8889999999999999999999999999999999999999999999999998888
Q ss_pred cchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCC---chhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCCCH
Q 003525 290 AGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDP 366 (813)
Q Consensus 290 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~ 366 (813)
.|.....++.+|+.+....||||||||+|.++..++.. ........+.+|+..|+++..+.+++||++||+++.+|+
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ 336 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDA 336 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhh
Confidence 88888899999999999999999999999998776432 223345677889999999888889999999999999999
Q ss_pred HhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcccccccch
Q 003525 367 ALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLEDE 446 (813)
Q Consensus 367 ~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~ 446 (813)
++.|++||++.+.++.|+.++|.+||+.++++..+..+.++..++..+.||+++||..++++|+..+.++..
T Consensus 337 ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~-------- 408 (638)
T CHL00176 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKK-------- 408 (638)
T ss_pred hhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC--------
Confidence 999999999999999999999999999999887777888999999999999999999999999887765432
Q ss_pred hhhHHhhhhccccchhhhcccccC
Q 003525 447 TIDAEVLNSMAVTNEHFQTALGTS 470 (813)
Q Consensus 447 ~~~~~~~~~~~v~~~d~~~al~~~ 470 (813)
..++.+++..|+..+
T Consensus 409 ---------~~It~~dl~~Ai~rv 423 (638)
T CHL00176 409 ---------ATITMKEIDTAIDRV 423 (638)
T ss_pred ---------CCcCHHHHHHHHHHH
Confidence 235666777766543
No 67
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.96 E-value=3.7e-27 Score=283.41 Aligned_cols=454 Identities=21% Similarity=0.304 Sum_probs=278.3
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhC----------CeEEE
Q 003525 210 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG----------AFFFL 279 (813)
Q Consensus 210 ~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~----------~~~v~ 279 (813)
.+-.++++.|.++.+.++.+.+.. ....+++|+||||||||++++.||..+. ..++.
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 455778899999987766655532 2345899999999999999999998862 44566
Q ss_pred Eechhhh--hhhcchhHHHHHHHHHHHHh-cCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEE
Q 003525 280 INGPEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMG 356 (813)
Q Consensus 280 v~~~~l~--~~~~g~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~ 356 (813)
++...+. ..+.|+.+..++.+++.+.. ..+.||||||+|.+...++... ..+ ..+.|... ..++.+.+||
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~-~~d--~~n~Lkp~----l~~G~l~~Ig 321 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG-QGD--AANLLKPA----LARGELRTIA 321 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc-ccc--HHHHhhHH----hhCCCeEEEE
Confidence 7666665 35789999999999999865 4678999999999987654221 111 12223333 3467899999
Q ss_pred ecCCCC-----CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCc----c-ccchhhHHHHhhcCCCchH-----H
Q 003525 357 ATNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMK----L-AEDVDLERVAKDTHGYVGS-----D 421 (813)
Q Consensus 357 atn~~~-----~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~----l-~~~~~l~~la~~t~g~~~~-----d 421 (813)
+|+..+ .+|++|.| || ..|.++.|+.+++..||+.+.+.+. + ..+..+..++..+++|... .
T Consensus 322 aTT~~e~~~~~~~d~AL~r--Rf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDK 398 (852)
T TIGR03345 322 ATTWAEYKKYFEKDPALTR--RF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDK 398 (852)
T ss_pred ecCHHHHhhhhhccHHHHH--hC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccH
Confidence 998643 47999999 99 4799999999999999876654432 1 1345677778888877642 1
Q ss_pred HHHHHHHHHHHH-HHhhccccc-----------------c--------cch-h---hhHH------hhh--------hcc
Q 003525 422 LAALCTEAALQC-IREKMDVID-----------------L--------EDE-T---IDAE------VLN--------SMA 457 (813)
Q Consensus 422 l~~l~~~a~~~~-~~~~~~~~~-----------------~--------~~~-~---~~~~------~~~--------~~~ 457 (813)
...|+.+|+... +........ . ... . .... ... ...
T Consensus 399 AIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (852)
T TIGR03345 399 AVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKE 478 (852)
T ss_pred HHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223444433211 110000000 0 000 0 0000 000 000
Q ss_pred ccc---------------------------hhhhccccc-----------CCCCcccccc-----cccCCc---------
Q 003525 458 VTN---------------------------EHFQTALGT-----------SNPSALRETV-----VEVPNV--------- 485 (813)
Q Consensus 458 v~~---------------------------~d~~~al~~-----------~~p~~~~~~~-----~~~~~~--------- 485 (813)
+.. ......+.. +.+.....++ +....+
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~e~~~l~ 558 (852)
T TIGR03345 479 LVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPVGRMVRDEIEAVL 558 (852)
T ss_pred HHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHHHHCCCchhhchhHHHHHH
Confidence 000 000000000 0000000000 000001
Q ss_pred -----ccccccccchhhhhhhccccCCCCChhhhhhhcCC---CCce-eeeecCCCCChhHHHHHHHHHh---CCeEEEE
Q 003525 486 -----SWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMS---PSKG-VLFYGPPGCGKTLLAKAIANEC---QANFISV 553 (813)
Q Consensus 486 -----~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~---~~~g-ilL~GppGtGKT~la~ala~~~---~~~~i~v 553 (813)
--..|.|++.+.+.+.+.+... +.|+. .|.| +||+||||||||.+|+++|..+ ...++.+
T Consensus 559 ~l~~~L~~~v~GQ~~Av~~v~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~ 630 (852)
T TIGR03345 559 SLPDRLAERVIGQDHALEAIAERIRTA--------RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITI 630 (852)
T ss_pred HHHHHhcCeEcChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEE
Confidence 1123556666655555544321 11222 2344 8999999999999999999998 4578899
Q ss_pred eccchhh------------hcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhc
Q 003525 554 KGPELLT------------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDG 621 (813)
Q Consensus 554 ~~~~l~~------------~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~ 621 (813)
+++++.. .|+|..+. +.+.+..++.+++||+||||+.. ...+.+.|++.||.
T Consensus 631 dmse~~~~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka--------------~~~v~~~Llq~ld~ 694 (852)
T TIGR03345 631 NMSEFQEAHTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA--------------HPDVLELFYQVFDK 694 (852)
T ss_pred eHHHhhhhhhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc--------------CHHHHHHHHHHhhc
Confidence 9887743 25554332 22445556678899999999874 24578888888875
Q ss_pred cC---------CCCcEEEEeccCCCC-----------------------------CCCccccCCCCcccccccCCCCHHH
Q 003525 622 MN---------AKKTVFIIGATNRPD-----------------------------IIDPALLRPGRLDQLIYIPLPDEAS 663 (813)
Q Consensus 622 ~~---------~~~~v~vi~aTn~~~-----------------------------~ld~allr~gRf~~~i~~~~p~~~~ 663 (813)
.. ...+.+||+|||... .+.|+++. |++ +|.|.+++.++
T Consensus 695 g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~ 771 (852)
T TIGR03345 695 GVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDV 771 (852)
T ss_pred ceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHH
Confidence 42 125789999999521 15577776 998 89999999999
Q ss_pred HHHHHHHHhccC--------CCCCccc---HHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHH
Q 003525 664 RLQIFKACLRKS--------PISPDVD---LSALARYTH--GFSGADITEVCQRACKYAIREN 713 (813)
Q Consensus 664 r~~Il~~~l~~~--------~~~~~~d---~~~la~~~~--g~sg~di~~l~~~a~~~a~~~~ 713 (813)
..+|++..+... ++.-.++ .+.|++... .|-.+.++++++.-...++-+.
T Consensus 772 l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~ 834 (852)
T TIGR03345 772 LAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQ 834 (852)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 999998877432 3322222 455665542 2456788888887766665544
No 68
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.5e-28 Score=265.72 Aligned_cols=260 Identities=41% Similarity=0.658 Sum_probs=217.5
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhh
Q 003525 208 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS 287 (813)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~ 287 (813)
...++.|+|++|++..++.+.+++-+|+.+|.+|..+. .+.+++||.||||+|||+|+++||.+.+..|+.+.++.+.+
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 45679999999999999999999999999999998653 56789999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccc--cCCcEEEEEecCCCCCCC
Q 003525 288 KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK--SRAHVIVMGATNRPNSID 365 (813)
Q Consensus 288 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--~~~~vivi~atn~~~~ld 365 (813)
+|.|+.+..++.+|+-|+..+|+|+||||+|.++.++.....+..+++..+++-.+++.. ...+|+|+||||.|+.+|
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~D 304 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELD 304 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHH
Confidence 999999999999999999999999999999999999865555666677766665555543 346899999999999999
Q ss_pred HHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCc-cccchhhHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccccccc
Q 003525 366 PALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMK-LAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLE 444 (813)
Q Consensus 366 ~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~-l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 444 (813)
++++| ||.+.++++.|+.+.|..+|+.++...+ ...+.++..+++.|+||++.|+.++|++|++...+.......+
T Consensus 305 ea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~- 381 (428)
T KOG0740|consen 305 EAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDL- 381 (428)
T ss_pred HHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhh-
Confidence 99999 9999999999999999999998877653 3345689999999999999999999999998766554332011
Q ss_pred chhhhHHhhhhccccchhhhcccccCCCCc
Q 003525 445 DETIDAEVLNSMAVTNEHFQTALGTSNPSA 474 (813)
Q Consensus 445 ~~~~~~~~~~~~~v~~~d~~~al~~~~p~~ 474 (813)
..+ .......+...||..++..+.|+.
T Consensus 382 -~~~--~~~~~r~i~~~df~~a~~~i~~~~ 408 (428)
T KOG0740|consen 382 -EFI--DADKIRPITYPDFKNAFKNIKPSV 408 (428)
T ss_pred -hhc--chhccCCCCcchHHHHHHhhcccc
Confidence 011 111234566777777777766653
No 69
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.96 E-value=3.9e-27 Score=285.00 Aligned_cols=453 Identities=23% Similarity=0.348 Sum_probs=286.5
Q ss_pred CCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHh----------CCeEEEEe
Q 003525 212 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFLIN 281 (813)
Q Consensus 212 ~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l----------~~~~v~v~ 281 (813)
-.++++.|.+++++++.+++.. ....+++|+||||||||++++.||..+ +..++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 3577899999999998887653 345689999999999999999999886 36788899
Q ss_pred chhhh--hhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecC
Q 003525 282 GPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATN 359 (813)
Q Consensus 282 ~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn 359 (813)
...+. .+|.|+.+.+++.+++.+....+.||||||+|.+...+.... .+ .+.+.|... ..++.+.+||+|+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g-~~--~~a~lLkp~----l~rg~l~~IgaTt 315 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEG-AI--DAANILKPA----LARGELQCIGATT 315 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCC-cc--cHHHHhHHH----HhCCCcEEEEeCC
Confidence 88876 467899999999999999888889999999999987654322 21 122223332 3467899999998
Q ss_pred CCC-----CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcC----Ccc-ccchhhHHHHhhcCCCchH-----HHHH
Q 003525 360 RPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKN----MKL-AEDVDLERVAKDTHGYVGS-----DLAA 424 (813)
Q Consensus 360 ~~~-----~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~----~~l-~~~~~l~~la~~t~g~~~~-----dl~~ 424 (813)
..+ ..|+++.+ ||. .+.++.|+.++...|++..... ..+ ..+..+..++..+++|... ....
T Consensus 316 ~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaid 392 (821)
T CHL00095 316 LDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAID 392 (821)
T ss_pred HHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHH
Confidence 764 46899998 885 5789999999998888754321 121 2344567777777777653 2234
Q ss_pred HHHHHHHHH-HHhhcccccc---c---------------chhhh------H------Hhh---------------hhccc
Q 003525 425 LCTEAALQC-IREKMDVIDL---E---------------DETID------A------EVL---------------NSMAV 458 (813)
Q Consensus 425 l~~~a~~~~-~~~~~~~~~~---~---------------~~~~~------~------~~~---------------~~~~v 458 (813)
++.+|+... +......... . +.... . ..+ ....+
T Consensus 393 lld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 472 (821)
T CHL00095 393 LLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKKTEEEKRLEVPVV 472 (821)
T ss_pred HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcc
Confidence 445444321 1100000000 0 00000 0 000 00112
Q ss_pred cchhhhcccccCC--CCc-ccc----cccccCCcccccccccchhhhhhhccccCCCCChhhhhhhcC----CCCceeee
Q 003525 459 TNEHFQTALGTSN--PSA-LRE----TVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGM----SPSKGVLF 527 (813)
Q Consensus 459 ~~~d~~~al~~~~--p~~-~~~----~~~~~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~----~~~~gilL 527 (813)
+..+....+.... |.. +.. ........--+.|.|++.+.+.+...+... +.|+ +|...+||
T Consensus 473 ~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~lf 544 (821)
T CHL00095 473 TEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFLF 544 (821)
T ss_pred CHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEEE
Confidence 2222222221110 000 000 000000011234667777777776655421 1122 12234899
Q ss_pred ecCCCCChhHHHHHHHHHh---CCeEEEEeccchhh-----h-------cccccHHHHHHHHHHHHhCCCeEEEEecchh
Q 003525 528 YGPPGCGKTLLAKAIANEC---QANFISVKGPELLT-----M-------WFGESEANVREIFDKARQSAPCVLFFDELDS 592 (813)
Q Consensus 528 ~GppGtGKT~la~ala~~~---~~~~i~v~~~~l~~-----~-------~vg~se~~i~~vF~~a~~~~p~il~iDEid~ 592 (813)
+||+|||||+||+++|..+ ..+++.++++++.. + |+|..+ .+.+....+..+.+|+||||||.
T Consensus 545 ~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeiek 622 (821)
T CHL00095 545 SGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEK 622 (821)
T ss_pred ECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhh
Confidence 9999999999999999987 35788998887632 2 344322 23456667777779999999998
Q ss_pred hhhccCCCCCCCCchHHHHHHHHHHHHhccC---------CCCcEEEEeccCCCCC------------------------
Q 003525 593 IATQRGSSTGDAGGAADRVLNQLLTEMDGMN---------AKKTVFIIGATNRPDI------------------------ 639 (813)
Q Consensus 593 l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~---------~~~~v~vi~aTn~~~~------------------------ 639 (813)
.. ..+.+.||+.||... ..++.++|+|||....
T Consensus 623 a~--------------~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~ 688 (821)
T CHL00095 623 AH--------------PDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYK 688 (821)
T ss_pred CC--------------HHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHH
Confidence 62 558899999998632 2357899999995311
Q ss_pred -------------CCccccCCCCcccccccCCCCHHHHHHHHHHHhccC-------CCCCccc---HHHHHHH--cCCCC
Q 003525 640 -------------IDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS-------PISPDVD---LSALARY--THGFS 694 (813)
Q Consensus 640 -------------ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~-------~~~~~~d---~~~la~~--~~g~s 694 (813)
+.|.++. |+|.+|.|.+.+.++..+|++..+.+. ++.-.++ .+.|++. ...|-
T Consensus 689 ~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~G 766 (821)
T CHL00095 689 RLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYG 766 (821)
T ss_pred HHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCC
Confidence 2345665 999999999999999999998877532 2222222 3455654 23445
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003525 695 GADITEVCQRACKYAIREN 713 (813)
Q Consensus 695 g~di~~l~~~a~~~a~~~~ 713 (813)
.+.|+.+++.-....+.+.
T Consensus 767 AR~l~r~i~~~i~~~l~~~ 785 (821)
T CHL00095 767 ARPLRRAIMRLLEDPLAEE 785 (821)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 6788888777766665544
No 70
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.95 E-value=1.8e-27 Score=279.67 Aligned_cols=242 Identities=41% Similarity=0.711 Sum_probs=215.0
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhhhhc
Q 003525 211 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLA 290 (813)
Q Consensus 211 ~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~~~~ 290 (813)
...|+++.|++..++.+.+++.+ +..++.+..++...+++++|+||||||||+++++++++++.+++.+++.++...+.
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 45788999999999999999987 66777888888888999999999999999999999999999999999999999899
Q ss_pred chhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCC---chhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCCCHH
Q 003525 291 GESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA 367 (813)
Q Consensus 291 g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~ 367 (813)
+.....++.+|..+....|+|+||||+|.++.+++.. ......+++++|+..|+++.....+++|++||+++.+|++
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 306 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH
Confidence 9999999999999999999999999999998876532 2234456788999999999888899999999999999999
Q ss_pred hhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcccccccchh
Q 003525 368 LRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLEDET 447 (813)
Q Consensus 368 l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~ 447 (813)
+.|++||++.++++.|+.++|.+||+.++++.++..+.++..++..+.||+++|+.++|++|+..+.++..
T Consensus 307 l~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~--------- 377 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNK--------- 377 (644)
T ss_pred HhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCC---------
Confidence 99999999999999999999999999999999988888999999999999999999999999998876532
Q ss_pred hhHHhhhhccccchhhhcccccC
Q 003525 448 IDAEVLNSMAVTNEHFQTALGTS 470 (813)
Q Consensus 448 ~~~~~~~~~~v~~~d~~~al~~~ 470 (813)
..++..++.+++..+
T Consensus 378 --------~~i~~~d~~~a~~~v 392 (644)
T PRK10733 378 --------RVVSMVEFEKAKDKI 392 (644)
T ss_pred --------CcccHHHHHHHHHHH
Confidence 235666676665544
No 71
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.95 E-value=2.3e-27 Score=249.74 Aligned_cols=215 Identities=20% Similarity=0.289 Sum_probs=169.6
Q ss_pred CCcccc-cChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhhhhc
Q 003525 212 VGYDDV-GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLA 290 (813)
Q Consensus 212 ~~~~~i-~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~~~~ 290 (813)
.+|+++ ||+--...-+..++...- ......+++.+|.+++||||||||||++|+++|++++..++.++++++.++|.
T Consensus 112 ~~f~~~~g~~~~~p~f~dk~~~hi~--kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 112 RSFDNLVGGYYIAPAFMDKVAVHIA--KNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred cchhhhcCccccCHHHHHHHHHHHH--hhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 355666 666544443333332100 11223367899999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHh-----cCCcEEEeccchhccCCCCCCchhHHHHHH-HHHHHHhhcc------------ccCCcE
Q 003525 291 GESESNLRKAFEEAEK-----NAPSIIFIDELDSIAPKREKTHGEVERRIV-SQLLTLMDGL------------KSRAHV 352 (813)
Q Consensus 291 g~~~~~l~~vf~~a~~-----~~p~il~iDEid~l~~~~~~~~~~~~~~v~-~~Ll~~ld~~------------~~~~~v 352 (813)
|++++.++.+|+.|.. ..||||||||||.+++.++.....+..+++ .+|+++||+. .....|
T Consensus 190 GEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V 269 (413)
T PLN00020 190 GEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRV 269 (413)
T ss_pred CcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCc
Confidence 9999999999999975 469999999999999998765556655565 8999998863 235679
Q ss_pred EEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhHHHHhhcCC----CchHHHHHHHHH
Q 003525 353 IVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHG----YVGSDLAALCTE 428 (813)
Q Consensus 353 ivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g----~~~~dl~~l~~~ 428 (813)
+||+|||+|+.||++|+|+|||++.+ ..|+.++|.+||+.+++...+. ..++..++..++| |.|+--.....+
T Consensus 270 ~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~ 346 (413)
T PLN00020 270 PIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDD 346 (413)
T ss_pred eEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHH
Confidence 99999999999999999999999965 5899999999999999988776 4678888888776 445543444444
Q ss_pred HHH
Q 003525 429 AAL 431 (813)
Q Consensus 429 a~~ 431 (813)
+..
T Consensus 347 ~v~ 349 (413)
T PLN00020 347 EVR 349 (413)
T ss_pred HHH
Confidence 433
No 72
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.95 E-value=5.3e-26 Score=275.79 Aligned_cols=456 Identities=24% Similarity=0.361 Sum_probs=282.4
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHh----------CCeEEE
Q 003525 210 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFL 279 (813)
Q Consensus 210 ~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l----------~~~~v~ 279 (813)
.+-.++.+.|.++++.++.+.+.. ....+++|+||||||||++++.|+..+ +..++.
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 344677899999987777766543 345678999999999999999999886 456777
Q ss_pred Eechhhh--hhhcchhHHHHHHHHHHHHh-cCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEE
Q 003525 280 INGPEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMG 356 (813)
Q Consensus 280 v~~~~l~--~~~~g~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~ 356 (813)
++...+. ..+.|+.+..++.+|..+.. ..+.||||||+|.+...+... +.. ...+.|. ....++.+.+||
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~-~~~--d~~~~Lk----~~l~~g~i~~Ig 307 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE-GAM--DAGNMLK----PALARGELHCIG 307 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc-chh--HHHHHhc----hhhhcCceEEEE
Confidence 8777665 46778999999999998865 358999999999998654322 111 1222232 233567899999
Q ss_pred ecCCCC-----CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-----cchhhHHHHhhcCCCchH-----H
Q 003525 357 ATNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-----EDVDLERVAKDTHGYVGS-----D 421 (813)
Q Consensus 357 atn~~~-----~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-----~~~~l~~la~~t~g~~~~-----d 421 (813)
+|+..+ .+|+++.| ||. .+.++.|+.+++..||+.+..++... .+..+...+..+++|... .
T Consensus 308 aTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdk 384 (852)
T TIGR03346 308 ATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDK 384 (852)
T ss_pred eCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchH
Confidence 998764 57999999 995 58999999999999999876655432 234566667777777643 1
Q ss_pred HHHHHHHHHHHHHHh-------------hcccc-------ccc-ch-----------h--------------hhHHh--h
Q 003525 422 LAALCTEAALQCIRE-------------KMDVI-------DLE-DE-----------T--------------IDAEV--L 453 (813)
Q Consensus 422 l~~l~~~a~~~~~~~-------------~~~~~-------~~~-~~-----------~--------------~~~~~--~ 453 (813)
...|+.+|+...... ..... ... +. . +..+. .
T Consensus 385 Aidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (852)
T TIGR03346 385 AIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAI 464 (852)
T ss_pred HHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223444443221100 00000 000 00 0 00000 0
Q ss_pred ----------hh-------------------------------------------------ccccchhhhcccccCC--C
Q 003525 454 ----------NS-------------------------------------------------MAVTNEHFQTALGTSN--P 472 (813)
Q Consensus 454 ----------~~-------------------------------------------------~~v~~~d~~~al~~~~--p 472 (813)
.. ..++.++....+.... |
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~~v~~~~tgip 544 (852)
T TIGR03346 465 QGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAEVVSRWTGIP 544 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHHHHHHHhcCCC
Confidence 00 0000000000000000 0
Q ss_pred Cc-cc----ccccccCCcccccccccchhhhhhhccccCCCCChhhhhhhcC----CCCceeeeecCCCCChhHHHHHHH
Q 003525 473 SA-LR----ETVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGM----SPSKGVLFYGPPGCGKTLLAKAIA 543 (813)
Q Consensus 473 ~~-~~----~~~~~~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~----~~~~gilL~GppGtGKT~la~ala 543 (813)
.. +. +........-...+.|++.+.+.+.+.+... ..|+ +|...++|+||||||||++|+++|
T Consensus 545 ~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La 616 (852)
T TIGR03346 545 VSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELAKALA 616 (852)
T ss_pred cccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHH--------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHH
Confidence 00 00 0000000011234566666666555544321 1122 233459999999999999999999
Q ss_pred HHh---CCeEEEEeccchhh-----h-------cccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchH
Q 003525 544 NEC---QANFISVKGPELLT-----M-------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAA 608 (813)
Q Consensus 544 ~~~---~~~~i~v~~~~l~~-----~-------~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~ 608 (813)
..+ +.+++.++++++.. . |+|..+ .+.+....+..+.+|+|||||+.+.
T Consensus 617 ~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlllDeieka~-------------- 680 (852)
T TIGR03346 617 EFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLFDEVEKAH-------------- 680 (852)
T ss_pred HHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCccc--ccHHHHHHHcCCCcEEEEeccccCC--------------
Confidence 987 46789998877643 2 233222 1334455556667899999999762
Q ss_pred HHHHHHHHHHHhccC---------CCCcEEEEeccCCCC-------------------------CCCccccCCCCccccc
Q 003525 609 DRVLNQLLTEMDGMN---------AKKTVFIIGATNRPD-------------------------IIDPALLRPGRLDQLI 654 (813)
Q Consensus 609 ~~vl~~lL~~ld~~~---------~~~~v~vi~aTn~~~-------------------------~ld~allr~gRf~~~i 654 (813)
..+.+.||+.|+... ...+.+||+|||... .+.|.|+. |+|.++
T Consensus 681 ~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~Ii 758 (852)
T TIGR03346 681 PDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIV 758 (852)
T ss_pred HHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEE
Confidence 457888898887532 135788999999832 14466776 999999
Q ss_pred ccCCCCHHHHHHHHHHHhcc-------CCCCCccc---HHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH
Q 003525 655 YIPLPDEASRLQIFKACLRK-------SPISPDVD---LSALARYT--HGFSGADITEVCQRACKYAIRENI 714 (813)
Q Consensus 655 ~~~~p~~~~r~~Il~~~l~~-------~~~~~~~d---~~~la~~~--~g~sg~di~~l~~~a~~~a~~~~~ 714 (813)
.|.+++.+...+|+...+.. .++...++ ++.|++.. ..+..+.|++++++.....+-+.+
T Consensus 759 vF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~ 830 (852)
T TIGR03346 759 VFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKI 830 (852)
T ss_pred ecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999877742 22222222 45566642 256678999999988877766543
No 73
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.95 E-value=4.7e-26 Score=274.92 Aligned_cols=455 Identities=22% Similarity=0.341 Sum_probs=269.5
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHh----------CCeEEE
Q 003525 210 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFL 279 (813)
Q Consensus 210 ~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l----------~~~~v~ 279 (813)
.+-.++++.|.++.+.++.+++.. ....+++|+||||||||++++.||..+ +..++.
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 344678899999987777766643 235679999999999999999999987 567788
Q ss_pred Eechhhh--hhhcchhHHHHHHHHHHHHh-cCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEE
Q 003525 280 INGPEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMG 356 (813)
Q Consensus 280 v~~~~l~--~~~~g~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~ 356 (813)
++...+. .++.|+.+..++.+|..... ..++||||||+|.+...+... +..+ ..+.|. ....++.+.+||
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~-~~~d--~~~~lk----p~l~~g~l~~Ig 312 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-GAMD--AGNMLK----PALARGELHCVG 312 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc-cchh--HHHHhc----chhhcCCCeEEE
Confidence 8777765 45778999999999998644 568899999999998765432 2221 122232 333567899999
Q ss_pred ecCCCC-----CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-----cchhhHHHHhhcCCCchH-----H
Q 003525 357 ATNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-----EDVDLERVAKDTHGYVGS-----D 421 (813)
Q Consensus 357 atn~~~-----~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-----~~~~l~~la~~t~g~~~~-----d 421 (813)
+|+..+ .+|+++.| ||. .|.++.|+.+++..||+.+..++... .+..+...+..+++|... .
T Consensus 313 aTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdk 389 (857)
T PRK10865 313 ATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDK 389 (857)
T ss_pred cCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChH
Confidence 999876 47999999 996 58899999999999999776554322 222334444555555421 1
Q ss_pred HHHHHHHHHHHH-------------HHhhc-------ccccccc--------------------------hhhhHH--hh
Q 003525 422 LAALCTEAALQC-------------IREKM-------DVIDLED--------------------------ETIDAE--VL 453 (813)
Q Consensus 422 l~~l~~~a~~~~-------------~~~~~-------~~~~~~~--------------------------~~~~~~--~~ 453 (813)
...++..++... +.+.. .....+. ..+... ..
T Consensus 390 Ai~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el 469 (857)
T PRK10865 390 AIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASL 469 (857)
T ss_pred HHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222111000 00000 0000000 000000 00
Q ss_pred ----------hh-----------------------------------------------ccccchhhhcccccCC--CCc
Q 003525 454 ----------NS-----------------------------------------------MAVTNEHFQTALGTSN--PSA 474 (813)
Q Consensus 454 ----------~~-----------------------------------------------~~v~~~d~~~al~~~~--p~~ 474 (813)
.. ..++.+++...+.... |..
T Consensus 470 ~~~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~ 549 (857)
T PRK10865 470 SGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVS 549 (857)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCHHHHHHHHHHHHCCCch
Confidence 00 0000000000000000 000
Q ss_pred -cc----ccccccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCC---CC-ceeeeecCCCCChhHHHHHHHHH
Q 003525 475 -LR----ETVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMS---PS-KGVLFYGPPGCGKTLLAKAIANE 545 (813)
Q Consensus 475 -~~----~~~~~~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~---~~-~gilL~GppGtGKT~la~ala~~ 545 (813)
+. .........-...+.|++.+.+.+...+... ..|+. .| ..++|+||||||||++|+++|..
T Consensus 550 ~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~ 621 (857)
T PRK10865 550 RMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF 621 (857)
T ss_pred hhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 00 0000000011223555555555554443321 11222 12 34899999999999999999988
Q ss_pred h---CCeEEEEeccchhhh------------cccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHH
Q 003525 546 C---QANFISVKGPELLTM------------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADR 610 (813)
Q Consensus 546 ~---~~~~i~v~~~~l~~~------------~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~ 610 (813)
+ +.+++.++++++... |+|..+. ..+....+..+.++|||||++.+. ..
T Consensus 622 l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~--g~l~~~v~~~p~~vLllDEieka~--------------~~ 685 (857)
T PRK10865 622 MFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEG--GYLTEAVRRRPYSVILLDEVEKAH--------------PD 685 (857)
T ss_pred hhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchh--HHHHHHHHhCCCCeEEEeehhhCC--------------HH
Confidence 7 456899988876432 2232211 123333444555899999998752 45
Q ss_pred HHHHHHHHHhccC---------CCCcEEEEeccCCC-------------------------CCCCccccCCCCccccccc
Q 003525 611 VLNQLLTEMDGMN---------AKKTVFIIGATNRP-------------------------DIIDPALLRPGRLDQLIYI 656 (813)
Q Consensus 611 vl~~lL~~ld~~~---------~~~~v~vi~aTn~~-------------------------~~ld~allr~gRf~~~i~~ 656 (813)
+.+.|++.|+... ...+.+||+|||.. ..+.|+|+. |+|.++.|
T Consensus 686 v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF 763 (857)
T PRK10865 686 VFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVF 763 (857)
T ss_pred HHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEec
Confidence 7788888886431 13467899999973 124578887 99999999
Q ss_pred CCCCHHHHHHHHHHHhccC-------CCCCccc---HHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH
Q 003525 657 PLPDEASRLQIFKACLRKS-------PISPDVD---LSALARYT--HGFSGADITEVCQRACKYAIREN 713 (813)
Q Consensus 657 ~~p~~~~r~~Il~~~l~~~-------~~~~~~d---~~~la~~~--~g~sg~di~~l~~~a~~~a~~~~ 713 (813)
.+++.+...+|++..+.+. ++...++ ++.|+... ..|-.+.|+.+++.-....+-+.
T Consensus 764 ~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~ 832 (857)
T PRK10865 764 HPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQ 832 (857)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999998877542 2322233 33444321 22335688888877766655543
No 74
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.95 E-value=2.7e-27 Score=286.29 Aligned_cols=201 Identities=20% Similarity=0.278 Sum_probs=169.1
Q ss_pred cccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhhhh----------cc-----------
Q 003525 233 LPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKL----------AG----------- 291 (813)
Q Consensus 233 ~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~~~----------~g----------- 291 (813)
.|.+.+.....+|+.+++||||+||||||||.||++||++.+.+++.|+++++++.+ .|
T Consensus 1614 ~~s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~ 1693 (2281)
T CHL00206 1614 FPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDI 1693 (2281)
T ss_pred CcccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccc
Confidence 344555677789999999999999999999999999999999999999999988643 11
Q ss_pred --------------------hh--HHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccc--
Q 003525 292 --------------------ES--ESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK-- 347 (813)
Q Consensus 292 --------------------~~--~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-- 347 (813)
.. ..+++.+|+.|+..+||||||||||+++.+.. ....+.+|+..|++..
T Consensus 1694 ~~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds------~~ltL~qLLneLDg~~~~ 1767 (2281)
T CHL00206 1694 DRDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES------NYLSLGLLVNSLSRDCER 1767 (2281)
T ss_pred ccccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc------ceehHHHHHHHhcccccc
Confidence 11 23488999999999999999999999987621 1123688899998763
Q ss_pred -cCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHH--hcCCccccc-hhhHHHHhhcCCCchHHHH
Q 003525 348 -SRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIH--TKNMKLAED-VDLERVAKDTHGYVGSDLA 423 (813)
Q Consensus 348 -~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~--~~~~~l~~~-~~l~~la~~t~g~~~~dl~ 423 (813)
...+|+||||||+|+.|||||.|+|||++.|+++.|+..+|.+++..+ .+++.+..+ +++..+|..|.||+|+||+
T Consensus 1768 ~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLa 1847 (2281)
T CHL00206 1768 CSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLV 1847 (2281)
T ss_pred CCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHH
Confidence 345799999999999999999999999999999999999999988864 455555543 5789999999999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q 003525 424 ALCTEAALQCIREKMD 439 (813)
Q Consensus 424 ~l~~~a~~~~~~~~~~ 439 (813)
++|.+|++.++++...
T Consensus 1848 nLvNEAaliAirq~ks 1863 (2281)
T CHL00206 1848 ALTNEALSISITQKKS 1863 (2281)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 9999999999887643
No 75
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.1e-26 Score=260.64 Aligned_cols=454 Identities=22% Similarity=0.350 Sum_probs=290.7
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHh----------CCeEEEE
Q 003525 211 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFLI 280 (813)
Q Consensus 211 ~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l----------~~~~v~v 280 (813)
.-.++.+.|-++++.++.+.+.. ....+-+|+|+||+|||.++..||..+ +..++.+
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 34677799999998888877754 234567899999999999999999875 3445667
Q ss_pred echhhh--hhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEec
Q 003525 281 NGPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGAT 358 (813)
Q Consensus 281 ~~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~at 358 (813)
+...+. .+|.|+.+++++.++.+.....+.||||||+|.+........+.++ .. +++...-.++.+-+||+|
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~D--Aa----NiLKPaLARGeL~~IGAT 306 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMD--AA----NLLKPALARGELRCIGAT 306 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccc--hh----hhhHHHHhcCCeEEEEec
Confidence 766665 4788999999999999999888899999999999877653221121 12 233333357788999988
Q ss_pred CCCC-----CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-----cchhhHHHHhhcCCCch-----HHHH
Q 003525 359 NRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-----EDVDLERVAKDTHGYVG-----SDLA 423 (813)
Q Consensus 359 n~~~-----~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-----~~~~l~~la~~t~g~~~-----~dl~ 423 (813)
+.-+ .-|++|.| || ..+.+..|+.++-..||+-...++... .|.-+...+..++.|.. --..
T Consensus 307 T~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAI 383 (786)
T COG0542 307 TLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAI 383 (786)
T ss_pred cHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHH
Confidence 7443 34899998 88 558999999999999999765554432 23334555555555543 2233
Q ss_pred HHHHHHHHHHHHhhccccc------------ccchhhh-------HHhhh---hc--------------cccchhhhccc
Q 003525 424 ALCTEAALQCIREKMDVID------------LEDETID-------AEVLN---SM--------------AVTNEHFQTAL 467 (813)
Q Consensus 424 ~l~~~a~~~~~~~~~~~~~------------~~~~~~~-------~~~~~---~~--------------~v~~~d~~~al 467 (813)
.++.+|+............ .+..... ..... .. .++.+++....
T Consensus 384 DLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Ia~vv 463 (786)
T COG0542 384 DLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEAEVDEDDIAEVV 463 (786)
T ss_pred HHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHhhccCHHHHHHHH
Confidence 4555554322111000000 0000000 00000 00 02222222222
Q ss_pred ccCC--CCc-c----cccccccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCC----CCceeeeecCCCCChh
Q 003525 468 GTSN--PSA-L----RETVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMS----PSKGVLFYGPPGCGKT 536 (813)
Q Consensus 468 ~~~~--p~~-~----~~~~~~~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~----~~~gilL~GppGtGKT 536 (813)
.... |.. + ++.....++.--..+.|++++...+...|... +.|+. |...+||.||+|+|||
T Consensus 464 ~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrra--------RaGL~dp~rPigsFlF~GPTGVGKT 535 (786)
T COG0542 464 ARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRA--------RAGLGDPNRPIGSFLFLGPTGVGKT 535 (786)
T ss_pred HHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEeeCCCcccHH
Confidence 1111 100 0 00111112222345778887777776655432 22332 3334899999999999
Q ss_pred HHHHHHHHHhC---CeEEEEeccchhh------------hcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCC
Q 003525 537 LLAKAIANECQ---ANFISVKGPELLT------------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSST 601 (813)
Q Consensus 537 ~la~ala~~~~---~~~i~v~~~~l~~------------~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~ 601 (813)
.||+++|..+. ..++.++++++.. .|||..+ =..+-+..++.++|||+||||++-
T Consensus 536 ELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEKA-------- 605 (786)
T COG0542 536 ELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEKA-------- 605 (786)
T ss_pred HHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhhc--------
Confidence 99999999986 7799999999974 3666544 234666777888899999999883
Q ss_pred CCCCchHHHHHHHHHHHHhccC---------CCCcEEEEeccCCC----------------------------CCCCccc
Q 003525 602 GDAGGAADRVLNQLLTEMDGMN---------AKKTVFIIGATNRP----------------------------DIIDPAL 644 (813)
Q Consensus 602 ~~~~~~~~~vl~~lL~~ld~~~---------~~~~v~vi~aTn~~----------------------------~~ld~al 644 (813)
+..|++.||+.||... ..++.+||+|||-- ..+.|++
T Consensus 606 ------HpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEF 679 (786)
T COG0542 606 ------HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEF 679 (786)
T ss_pred ------CHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHH
Confidence 5679999999999753 23578999999942 1245778
Q ss_pred cCCCCcccccccCCCCHHHHHHHHHHHhccC-------CCCCccc---HHHHHHHc--CCCCHHHHHHHHHHHHHHHHHH
Q 003525 645 LRPGRLDQLIYIPLPDEASRLQIFKACLRKS-------PISPDVD---LSALARYT--HGFSGADITEVCQRACKYAIRE 712 (813)
Q Consensus 645 lr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~-------~~~~~~d---~~~la~~~--~g~sg~di~~l~~~a~~~a~~~ 712 (813)
+. |+|.+|.|.+.+.+...+|+...+... ++.-.++ .+.|++.. ..|-++-|+.+++.-....+-+
T Consensus 680 LN--Rid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~ 757 (786)
T COG0542 680 LN--RIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLAD 757 (786)
T ss_pred Hh--hcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHH
Confidence 87 999999999999999999998877432 2221121 34445432 3455667777666655544443
No 76
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.5e-23 Score=210.54 Aligned_cols=239 Identities=27% Similarity=0.397 Sum_probs=175.4
Q ss_pred ccccccccchhhhhhhccccCCCCChhhhhhh-cCCCCceeeeecCCCCChhHHHHHHHHHhC---------CeEEEEec
Q 003525 486 SWEDIGGLDNVKRELQETVQYPVEHPEKFEKF-GMSPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFISVKG 555 (813)
Q Consensus 486 ~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~-~~~~~~gilL~GppGtGKT~la~ala~~~~---------~~~i~v~~ 555 (813)
-|+.++--..+|++|...+...+...+.-... -+...+-+||+||||||||+|+|++|..+. ...+.+++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 47777766778887766544322211110010 123345599999999999999999999873 34689999
Q ss_pred cchhhhcccccHHHHHHHHHHHHhCC-----CeEEEEecchhhhhccCC-CCCCCCchHHHHHHHHHHHHhccCCCCcEE
Q 003525 556 PELLTMWFGESEANVREIFDKARQSA-----PCVLFFDELDSIATQRGS-STGDAGGAADRVLNQLLTEMDGMNAKKTVF 629 (813)
Q Consensus 556 ~~l~~~~vg~se~~i~~vF~~a~~~~-----p~il~iDEid~l~~~r~~-~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~ 629 (813)
..++++|++||.+.|.++|++..... .-.++|||+++++..|.+ ..+......-|++|.+|++||.+....+|+
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvl 299 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVL 299 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEE
Confidence 99999999999999999999976532 236779999999999843 233334456799999999999999999999
Q ss_pred EEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccC---CCC----------Cccc-----HHHHHHH-c
Q 003525 630 IIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS---PIS----------PDVD-----LSALARY-T 690 (813)
Q Consensus 630 vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~---~~~----------~~~d-----~~~la~~-~ 690 (813)
+++|+|..+.||.|+.. |-|-+.|+++|+...|.+|++.++..+ ++- .... ...+++. +
T Consensus 300 iL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~ 377 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELST 377 (423)
T ss_pred EEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhh
Confidence 99999999999999998 999999999999999999999988543 111 0111 1222222 4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCcccccccccccccccHHHHHHHHhh
Q 003525 691 HGFSGADITEVCQRACKYAIRENIEKDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKY 753 (813)
Q Consensus 691 ~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~ 753 (813)
.|.||+-|+.+=.-|...-. ....|+..+|..|+-.
T Consensus 378 ~gLSGRtlrkLP~Laha~y~---------------------------~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 378 VGLSGRTLRKLPLLAHAEYF---------------------------RTFTVDLSNFLLALLE 413 (423)
T ss_pred cCCccchHhhhhHHHHHhcc---------------------------CCCccChHHHHHHHHH
Confidence 78888888776544432211 1246888888888754
No 77
>CHL00181 cbbX CbbX; Provisional
Probab=99.88 E-value=4.3e-22 Score=211.84 Aligned_cols=215 Identities=23% Similarity=0.338 Sum_probs=166.0
Q ss_pred cccccccchhhhhhhccccCCCCChhhhhhhcCCCCc---eeeeecCCCCChhHHHHHHHHHhC-------CeEEEEecc
Q 003525 487 WEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSK---GVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGP 556 (813)
Q Consensus 487 ~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~---gilL~GppGtGKT~la~ala~~~~-------~~~i~v~~~ 556 (813)
+++++|++++|+++.+.+.+ ..........|+.++. +++|+||||||||++|+++|..+. .+++.++.+
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 45799999999999998876 3344555666765542 389999999999999999998862 358999999
Q ss_pred chhhhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCC
Q 003525 557 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR 636 (813)
Q Consensus 557 ~l~~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~ 636 (813)
++.+.|+|+++..++.+|+.+.. +||||||+|.+...++. ......+++.|+..|+.. ..+++||+|++.
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~~-----~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~ 170 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDNE-----RDYGSEAIEILLQVMENQ--RDDLVVIFAGYK 170 (287)
T ss_pred HHHHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCCc-----cchHHHHHHHHHHHHhcC--CCCEEEEEeCCc
Confidence 99999999999889999988753 59999999998754321 235678899999999854 356888888864
Q ss_pred CC-----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCC--CCCcccHHHHHHH------cCCCC-HHHHHHHH
Q 003525 637 PD-----IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSP--ISPDVDLSALARY------THGFS-GADITEVC 702 (813)
Q Consensus 637 ~~-----~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~--~~~~~d~~~la~~------~~g~s-g~di~~l~ 702 (813)
.. .++|++.| ||+.+|+|++|+.+++.+|++.++++.. ++++. ...+... ...|. ++++++++
T Consensus 171 ~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~i~~~~~~~~~GNaR~vrn~v 247 (287)
T CHL00181 171 DRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA-EKALLDYIKKRMEQPLFANARSVRNAL 247 (287)
T ss_pred HHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 32 34799998 9999999999999999999999997654 33322 2233322 23455 89999999
Q ss_pred HHHHHHHHHHHHH
Q 003525 703 QRACKYAIRENIE 715 (813)
Q Consensus 703 ~~a~~~a~~~~~~ 715 (813)
..|......+...
T Consensus 248 e~~~~~~~~r~~~ 260 (287)
T CHL00181 248 DRARMRQANRIFE 260 (287)
T ss_pred HHHHHHHHHHHHc
Confidence 9998877666543
No 78
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3.6e-22 Score=214.15 Aligned_cols=220 Identities=21% Similarity=0.328 Sum_probs=167.6
Q ss_pred cccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhhhccc
Q 003525 485 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 564 (813)
Q Consensus 485 ~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~~~vg 564 (813)
-+|+.+.--.++|+.|.+-+....+..+-+++.|....+|.|||||||||||+++.|+|++++...+.+.-++..
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~----- 272 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK----- 272 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc-----
Confidence 567777777788999888888888888999999999999999999999999999999999999999888776653
Q ss_pred ccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCC---CCc-hHHHHHHHHHHHHhccCCC--CcEEEEeccCCCC
Q 003525 565 ESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGD---AGG-AADRVLNQLLTEMDGMNAK--KTVFIIGATNRPD 638 (813)
Q Consensus 565 ~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~---~~~-~~~~vl~~lL~~ld~~~~~--~~v~vi~aTn~~~ 638 (813)
.... ++.+.-..... +||+|++||+-+..|+..... ..+ ...-.++.||+.+||+-.. +--|||+|||.++
T Consensus 273 ~n~d-Lr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 273 LDSD-LRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred CcHH-HHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 2223 78887776554 699999999988755433221 111 2335689999999999543 3678999999999
Q ss_pred CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCC-CCCcccHHHHHHHcCCCCHHHHHHHHHH---HHHHHHHHH
Q 003525 639 IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSP-ISPDVDLSALARYTHGFSGADITEVCQR---ACKYAIREN 713 (813)
Q Consensus 639 ~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~-~~~~~d~~~la~~~~g~sg~di~~l~~~---a~~~a~~~~ 713 (813)
.|||||+||||+|.+||++.-+.++-+.+++.++.-.. -..-.+++.+.+.+ ..|+||+....-. .+..|++..
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~-~~tPA~V~e~lm~~~~dad~~lk~L 427 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEET-EVTPAQVAEELMKNKNDADVALKGL 427 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcC-ccCHHHHHHHHhhccccHHHHHHHH
Confidence 99999999999999999999999999999999986432 11111233433333 3799999864422 344444443
No 79
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.86 E-value=2.1e-21 Score=205.29 Aligned_cols=214 Identities=21% Similarity=0.297 Sum_probs=159.4
Q ss_pred cccccccchhhhhhhccccCCCCChhhhhhhcCCCC---ceeeeecCCCCChhHHHHHHHHHh-------CCeEEEEecc
Q 003525 487 WEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPS---KGVLFYGPPGCGKTLLAKAIANEC-------QANFISVKGP 556 (813)
Q Consensus 487 ~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~---~gilL~GppGtGKT~la~ala~~~-------~~~~i~v~~~ 556 (813)
+++++|++.+|+.+++.+.|.... ......|+.+. .+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 467999999999999988776433 22233455433 358999999999999999999875 2468889999
Q ss_pred chhhhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCC
Q 003525 557 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR 636 (813)
Q Consensus 557 ~l~~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~ 636 (813)
++.+.|+|+++..++.+|+.+. .+||||||+|.+... . ........++.|++.|+.. ..++++|++++.
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~--~----~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG--G----EKDFGKEAIDTLVKGMEDN--RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC--C----ccchHHHHHHHHHHHHhcc--CCCEEEEecCCc
Confidence 9999999999999999998875 369999999999631 1 1224567889999999864 345666666554
Q ss_pred CC-----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHH---------cCCCCHHHHHHH
Q 003525 637 PD-----IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVD-LSALARY---------THGFSGADITEV 701 (813)
Q Consensus 637 ~~-----~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d-~~~la~~---------~~g~sg~di~~l 701 (813)
.+ .++|++.+ ||+..|+||+++.+++.+|++.++...+..-+.+ +..+++. ...-+++.++++
T Consensus 153 ~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~ 230 (261)
T TIGR02881 153 DEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNI 230 (261)
T ss_pred chhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence 33 37889998 9999999999999999999999998765432222 3344322 112457888888
Q ss_pred HHHHHHHHHHHHH
Q 003525 702 CQRACKYAIRENI 714 (813)
Q Consensus 702 ~~~a~~~a~~~~~ 714 (813)
+..|......+.+
T Consensus 231 ~e~a~~~~~~r~~ 243 (261)
T TIGR02881 231 IEKAIRRQAVRLL 243 (261)
T ss_pred HHHHHHHHHHHHh
Confidence 8888776655543
No 80
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.86 E-value=1.8e-21 Score=183.59 Aligned_cols=130 Identities=46% Similarity=0.793 Sum_probs=118.4
Q ss_pred eeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhhhcccccHHHHHHHHHHHHhCC-CeEEEEecchhhhhccCCCCCC
Q 003525 525 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSA-PCVLFFDELDSIATQRGSSTGD 603 (813)
Q Consensus 525 ilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~~-p~il~iDEid~l~~~r~~~~~~ 603 (813)
+||+||||||||++++.+|..++.+++.++++++.+.+.+++++.+..+|+.+.... |+|+||||+|.+.... ...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---~~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS---QPS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC---STS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc---ccc
Confidence 689999999999999999999999999999999999999999999999999999988 9999999999999986 123
Q ss_pred CCchHHHHHHHHHHHHhccCCC-CcEEEEeccCCCCCCCccccCCCCcccccccCC
Q 003525 604 AGGAADRVLNQLLTEMDGMNAK-KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL 658 (813)
Q Consensus 604 ~~~~~~~vl~~lL~~ld~~~~~-~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~ 658 (813)
......+++++|+..|+..... .+++||+|||.++.++++++| +||+..|++|+
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 3566788999999999998765 679999999999999999998 89999999874
No 81
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.86 E-value=1.7e-21 Score=207.57 Aligned_cols=212 Identities=22% Similarity=0.313 Sum_probs=165.8
Q ss_pred cccccchhhhhhhccccCCCCChhhhhhhcCCC---CceeeeecCCCCChhHHHHHHHHHhC-------CeEEEEeccch
Q 003525 489 DIGGLDNVKRELQETVQYPVEHPEKFEKFGMSP---SKGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPEL 558 (813)
Q Consensus 489 ~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~---~~gilL~GppGtGKT~la~ala~~~~-------~~~i~v~~~~l 558 (813)
+++|++++|+++.+.+.+ ...+..+...|+.. ..+++|+||||||||++|+++|..+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999998887 55566667777764 34799999999999999999998863 36999999999
Q ss_pred hhhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCC-
Q 003525 559 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP- 637 (813)
Q Consensus 559 ~~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~- 637 (813)
.+.|+|+++..++.+|+.+.. ++|||||++.+...++. ......+++.|++.|+.. ..+++||+|++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~-----~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE-----RDYGQEAIEILLQVMENQ--RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc-----cchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHH
Confidence 999999999999999998754 69999999998654321 235677889999999853 4577888887643
Q ss_pred -CC---CCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHH------cCC-CCHHHHHHHHHHH
Q 003525 638 -DI---IDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVD-LSALARY------THG-FSGADITEVCQRA 705 (813)
Q Consensus 638 -~~---ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d-~~~la~~------~~g-~sg~di~~l~~~a 705 (813)
+. ++|+|.+ ||+..|+||+++.+++..|++.++++....-+.+ +..+... .+. -++++++++++.|
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~ 249 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRA 249 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 33 5899999 9999999999999999999999998764332222 3333333 122 3489999999998
Q ss_pred HHHHHHHH
Q 003525 706 CKYAIREN 713 (813)
Q Consensus 706 ~~~a~~~~ 713 (813)
......+.
T Consensus 250 ~~~~~~r~ 257 (284)
T TIGR02880 250 RLRQANRL 257 (284)
T ss_pred HHHHHHHH
Confidence 87766654
No 82
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=7.9e-21 Score=198.26 Aligned_cols=181 Identities=30% Similarity=0.548 Sum_probs=145.5
Q ss_pred CCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhhhcccccHHHHHHHHHHHHhCCCe-EEEEecchhhhhccC
Q 003525 520 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPC-VLFFDELDSIATQRG 598 (813)
Q Consensus 520 ~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~~p~-il~iDEid~l~~~r~ 598 (813)
.+.++|+||||||||||++|+-||..+|..+-.+.|.++... -.+.-..|.++|+.+..+... +|||||+|.++..|.
T Consensus 382 apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRn 460 (630)
T KOG0742|consen 382 APFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERN 460 (630)
T ss_pred chhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhc
Confidence 455679999999999999999999999999999999887532 123456799999999886544 889999999999886
Q ss_pred CCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC
Q 003525 599 SSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS 678 (813)
Q Consensus 599 ~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~ 678 (813)
.. ..++..+..+|.||-- ....+++++++.+||+|..||.|+-. |+|.+|+||+|..++|..++..++.++-+.
T Consensus 461 kt--ymSEaqRsaLNAlLfR--TGdqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~ 534 (630)
T KOG0742|consen 461 KT--YMSEAQRSALNALLFR--TGDQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILK 534 (630)
T ss_pred hh--hhcHHHHHHHHHHHHH--hcccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcC
Confidence 53 3345667788888743 33557789999999999999999998 999999999999999999999888654211
Q ss_pred C-----------------------c----ccHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003525 679 P-----------------------D----VDLSALARYTHGFSGADITEVCQRACK 707 (813)
Q Consensus 679 ~-----------------------~----~d~~~la~~~~g~sg~di~~l~~~a~~ 707 (813)
+ . .-+.+.|+.|+||||++|..++-....
T Consensus 535 ~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQA 590 (630)
T KOG0742|consen 535 PATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQA 590 (630)
T ss_pred cCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 0 0 114677889999999999998765443
No 83
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.79 E-value=1.6e-18 Score=163.30 Aligned_cols=129 Identities=48% Similarity=0.826 Sum_probs=117.6
Q ss_pred EEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhhhhcchhHHHHHHHHHHHHhcC-CcEEEeccchhccCCCCCCchh
Q 003525 252 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA-PSIIFIDELDSIAPKREKTHGE 330 (813)
Q Consensus 252 vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~-p~il~iDEid~l~~~~~~~~~~ 330 (813)
|||+||||||||++++.+|+.++.+++.+++.++.+.+.++....+..+|+.+.... |+++||||+|.+.++.......
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 699999999999999999999999999999999998889999999999999998887 9999999999999887545566
Q ss_pred HHHHHHHHHHHHhhccccC-CcEEEEEecCCCCCCCHHhhccCCcceEEEcC
Q 003525 331 VERRIVSQLLTLMDGLKSR-AHVIVMGATNRPNSIDPALRRFGRFDREIDIG 381 (813)
Q Consensus 331 ~~~~v~~~Ll~~ld~~~~~-~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~ 381 (813)
....+.++|+..++..... .++++|++||.++.+++.+.+ +||+..++++
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~ 131 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFP 131 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-
T ss_pred ccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcC
Confidence 7788899999999987765 569999999999999999998 8999999886
No 84
>CHL00181 cbbX CbbX; Provisional
Probab=99.75 E-value=3e-17 Score=174.73 Aligned_cols=214 Identities=18% Similarity=0.313 Sum_probs=157.9
Q ss_pred cccccChHHHHHHHHHHHHcccCChhhhhhhCCCC---CceEEEECCCCCchHHHHHHHHHHhC-------CeEEEEech
Q 003525 214 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP---PKGILLYGPPGSGKTLIARAVANETG-------AFFFLINGP 283 (813)
Q Consensus 214 ~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~---~~~vLL~GppGsGKTtLar~la~~l~-------~~~v~v~~~ 283 (813)
+.+++|+++++++|++++.+ +..+++...+|+.+ +.+++|+||||||||++|+++|..+. .+++.+++.
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 45799999999999999887 44567777777754 34599999999999999999998752 357899999
Q ss_pred hhhhhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCC-
Q 003525 284 EIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN- 362 (813)
Q Consensus 284 ~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~- 362 (813)
++.+.+.|+.+..++.+|+.+. ..+|||||++.+...++ ..+....+...|+..|+... ..+++|++++...
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~~~--~~~~vI~ag~~~~~ 173 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMENQR--DDLVVIFAGYKDRM 173 (287)
T ss_pred HHHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC--ccchHHHHHHHHHHHHhcCC--CCEEEEEeCCcHHH
Confidence 9999999988888888888764 36999999999875432 22345677888999887543 4566776665321
Q ss_pred ----CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCc--cccchh---hHHHHhh--cCCCc-hHHHHHHHHHHH
Q 003525 363 ----SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMK--LAEDVD---LERVAKD--THGYV-GSDLAALCTEAA 430 (813)
Q Consensus 363 ----~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~--l~~~~~---l~~la~~--t~g~~-~~dl~~l~~~a~ 430 (813)
.++|++++ ||+..++|+.++.+++.+|+..+++... +.++.. ...+... ...|. ++.+..++..+.
T Consensus 174 ~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 174 DKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRAR 251 (287)
T ss_pred HHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34688988 9999999999999999999998876543 333221 1222221 23454 788888888887
Q ss_pred HHHHHhh
Q 003525 431 LQCIREK 437 (813)
Q Consensus 431 ~~~~~~~ 437 (813)
.+...+.
T Consensus 252 ~~~~~r~ 258 (287)
T CHL00181 252 MRQANRI 258 (287)
T ss_pred HHHHHHH
Confidence 6655443
No 85
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.74 E-value=4e-17 Score=174.02 Aligned_cols=211 Identities=18% Similarity=0.284 Sum_probs=156.0
Q ss_pred cccChHHHHHHHHHHHHcccCChhhhhhhCCCC---CceEEEECCCCCchHHHHHHHHHHhC-------CeEEEEechhh
Q 003525 216 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP---PKGILLYGPPGSGKTLIARAVANETG-------AFFFLINGPEI 285 (813)
Q Consensus 216 ~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~---~~~vLL~GppGsGKTtLar~la~~l~-------~~~v~v~~~~l 285 (813)
+++|+++++++|++++.+ +..++.+..+|+.+ +.+++|+||||||||++|+++|..+. .+++.+++.++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 699999999999999988 66777888888764 45899999999999999999998763 36889999999
Q ss_pred hhhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCC--CC-
Q 003525 286 MSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNR--PN- 362 (813)
Q Consensus 286 ~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~--~~- 362 (813)
.+.+.|+....++.+|+.+.. ++|||||++.+...++ .......+...|+..|+... ..+++|++++. ++
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~~~--~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMENQR--DDLVVILAGYKDRMDS 174 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCC--ccchHHHHHHHHHHHHhcCC--CCEEEEEeCCcHHHHH
Confidence 888889888888888887643 6999999999865432 22344567788888887543 45667766553 22
Q ss_pred --CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhh------cCCC-chHHHHHHHHHHHHH
Q 003525 363 --SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKD------THGY-VGSDLAALCTEAALQ 432 (813)
Q Consensus 363 --~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~------t~g~-~~~dl~~l~~~a~~~ 432 (813)
.++|++++ ||...++++.++.+++..|++.++++.... +...+..+... .+.+ ++..+.+++..+..+
T Consensus 175 ~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 175 FFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred HHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH
Confidence 34788988 999999999999999999999887764321 11222333222 1222 356777777777655
Q ss_pred HHHh
Q 003525 433 CIRE 436 (813)
Q Consensus 433 ~~~~ 436 (813)
...+
T Consensus 253 ~~~r 256 (284)
T TIGR02880 253 QANR 256 (284)
T ss_pred HHHH
Confidence 4443
No 86
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.74 E-value=1.1e-17 Score=166.34 Aligned_cols=189 Identities=26% Similarity=0.404 Sum_probs=126.7
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhhhcc
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 563 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~~~v 563 (813)
..++++++|+++++..+.-.+..... .-....+++||||||+||||||+.+|++++.+|..++++.+-
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~--------r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~---- 87 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKK--------RGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE---- 87 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHC--------TTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC------
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHh--------cCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh----
Confidence 45789999999999987654432111 112345799999999999999999999999999999887542
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccC-----C-----------CCc
Q 003525 564 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----A-----------KKT 627 (813)
Q Consensus 564 g~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----~-----------~~~ 627 (813)
....+..++..... ..|||||||+++. ..+...|+..|+... + ..+
T Consensus 88 --k~~dl~~il~~l~~--~~ILFIDEIHRln--------------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 88 --KAGDLAAILTNLKE--GDILFIDEIHRLN--------------KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp --SCHHHHHHHHT--T--T-EEEECTCCC----------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred --hHHHHHHHHHhcCC--CcEEEEechhhcc--------------HHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 22344555555543 3699999999984 346677888888642 1 136
Q ss_pred EEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHcCCCCHHHHHHHHHHH
Q 003525 628 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVD-LSALARYTHGFSGADITEVCQRA 705 (813)
Q Consensus 628 v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d-~~~la~~~~g~sg~di~~l~~~a 705 (813)
+.+|+||++...|.+.|.. ||..+..+..++.++..+|++...+.+++.-+.+ ..++|....| +++-..++++++
T Consensus 150 FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp -EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred ceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 8899999999999999998 9998889999999999999999888887764443 4667776665 676666666654
No 87
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.72 E-value=1.4e-16 Score=168.42 Aligned_cols=176 Identities=22% Similarity=0.319 Sum_probs=132.4
Q ss_pred cccccChHHHHHHHHHHHHcccCChhhhhhhCCC---CCceEEEECCCCCchHHHHHHHHHHh-------CCeEEEEech
Q 003525 214 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK---PPKGILLYGPPGSGKTLIARAVANET-------GAFFFLINGP 283 (813)
Q Consensus 214 ~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~---~~~~vLL~GppGsGKTtLar~la~~l-------~~~~v~v~~~ 283 (813)
+++++|+++++++|++++.++... ......|+. ...+++|+|||||||||+|+++|+.+ ...++.+++.
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 567999999999999998875433 222334554 23569999999999999999999875 2357888999
Q ss_pred hhhhhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCC--
Q 003525 284 EIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRP-- 361 (813)
Q Consensus 284 ~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~-- 361 (813)
++.+.+.|+....++.+|+.+. .++|||||+|.+..... .......+..|+..|+... ..+++++++...
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~---~~~~~~~i~~Ll~~~e~~~--~~~~vila~~~~~~ 155 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE---KDFGKEAIDTLVKGMEDNR--NEFVLILAGYSDEM 155 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc---cchHHHHHHHHHHHHhccC--CCEEEEecCCcchh
Confidence 9999999999988999988774 46999999999974321 1233456677888887653 344555444322
Q ss_pred ---CCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCc
Q 003525 362 ---NSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMK 400 (813)
Q Consensus 362 ---~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~ 400 (813)
..++|++++ ||...++++.++.+++.+|++.++....
T Consensus 156 ~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~ 195 (261)
T TIGR02881 156 DYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKERE 195 (261)
T ss_pred HHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcC
Confidence 236788887 8988999999999999999998876543
No 88
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.72 E-value=2.6e-17 Score=198.56 Aligned_cols=204 Identities=25% Similarity=0.388 Sum_probs=144.3
Q ss_pred ccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchh--------
Q 003525 488 EDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 559 (813)
Q Consensus 488 ~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~-------- 559 (813)
+++.|++++|+.+.+.+...... +......++|+||||||||++|+++|+.++.+|+.++...+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 45889999999998865543211 111234699999999999999999999999999988755432
Q ss_pred -hhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhc-----cC--------CC
Q 003525 560 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDG-----MN--------AK 625 (813)
Q Consensus 560 -~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~-----~~--------~~ 625 (813)
..|+|.....+.+.|..+....| |+||||||.+.+.... ...+.||+.||. +. +.
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~----------~~~~aLl~~ld~~~~~~f~d~~~~~~~d~ 461 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG----------DPASALLEVLDPEQNNAFSDHYLDVPFDL 461 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC----------CHHHHHHHhcCHHhcCccccccCCceecc
Confidence 36888888888999998876666 8999999999753211 124566666663 11 12
Q ss_pred CcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHh-----ccCCCCC---cc---cHHHHHH-HcCCC
Q 003525 626 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACL-----RKSPISP---DV---DLSALAR-YTHGF 693 (813)
Q Consensus 626 ~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l-----~~~~~~~---~~---d~~~la~-~~~g~ 693 (813)
.++++|+|||.++.|+++|++ ||+ +|+|+.|+.+++.+|++.++ +..++.. .+ .+..+++ .+..+
T Consensus 462 s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~ 538 (775)
T TIGR00763 462 SKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREA 538 (775)
T ss_pred CCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhc
Confidence 578999999999999999998 996 88999999999999999876 2223321 12 2444444 23334
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 003525 694 SGADITEVCQRACKYAIRE 712 (813)
Q Consensus 694 sg~di~~l~~~a~~~a~~~ 712 (813)
..++|+..+......+..+
T Consensus 539 g~R~l~r~i~~~~~~~~~~ 557 (775)
T TIGR00763 539 GVRNLERQIEKICRKAAVK 557 (775)
T ss_pred CChHHHHHHHHHHHHHHHH
Confidence 4456666555555444433
No 89
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.72 E-value=5e-17 Score=195.13 Aligned_cols=250 Identities=21% Similarity=0.279 Sum_probs=167.6
Q ss_pred cccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHh----------CCeEEEEe
Q 003525 485 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 554 (813)
Q Consensus 485 ~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~----------~~~~i~v~ 554 (813)
-.++++.|.++....+.+.+. .....+++|+||||||||++++++|..+ +..++.++
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~-------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLC-------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHh-------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 356677777766655544332 2334579999999999999999999987 66788999
Q ss_pred ccchh--hhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEe
Q 003525 555 GPELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIG 632 (813)
Q Consensus 555 ~~~l~--~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~ 632 (813)
...+. .+|.|+.++.++.+|+.+....++||||||||.+.+.+..+.+ ...+.+.|+..|. .+.+.+|+
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~-----~~~~~~~L~~~l~----~g~i~~Ig 316 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGG-----SMDASNLLKPALS----SGKLRCIG 316 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCc-----cHHHHHHHHHHHh----CCCeEEEE
Confidence 88887 5899999999999999998778899999999999876432211 1223344555554 56789999
Q ss_pred ccCCCC-----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCC----CC-CcccHHHHHHHcCCCCHH-----H
Q 003525 633 ATNRPD-----IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSP----IS-PDVDLSALARYTHGFSGA-----D 697 (813)
Q Consensus 633 aTn~~~-----~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~----~~-~~~d~~~la~~~~g~sg~-----d 697 (813)
|||..+ .+|+|+.| ||+ .|+++.|+.+++.+|++.....+. +. .+..+..++..+..|-+. -
T Consensus 317 aTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~k 393 (731)
T TIGR02639 317 STTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDK 393 (731)
T ss_pred ecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHH
Confidence 999743 47999999 997 799999999999999998775432 11 122234444433333211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhccCCcccccccccccccccHHHHHHHHhhcc----CCCCHHHHHHHHHHHHHH
Q 003525 698 ITEVCQRACKYAIRENIEKDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYAR----RSVSDADIRKYQLFAQTL 773 (813)
Q Consensus 698 i~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~----~s~~~~~~~~y~~~~~~~ 773 (813)
--.++.+|+..+..+. . ......|+.+|+..++.... ..++.++..++..+.+.+
T Consensus 394 ai~lld~a~a~~~~~~--------------------~-~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l 452 (731)
T TIGR02639 394 AIDVIDEAGASFRLRP--------------------K-AKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNL 452 (731)
T ss_pred HHHHHHHhhhhhhcCc--------------------c-cccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHH
Confidence 1223333332111000 0 00123589999999988863 245667777777776666
Q ss_pred hhccCCCC
Q 003525 774 QQSRGFGS 781 (813)
Q Consensus 774 ~~~~~~~~ 781 (813)
.. +=+|+
T Consensus 453 ~~-~v~GQ 459 (731)
T TIGR02639 453 KA-KIFGQ 459 (731)
T ss_pred hc-ceeCc
Confidence 44 33444
No 90
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.71 E-value=1.7e-16 Score=167.86 Aligned_cols=227 Identities=23% Similarity=0.367 Sum_probs=158.9
Q ss_pred CCcccccccccchhhhh---hhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchh
Q 003525 483 PNVSWEDIGGLDNVKRE---LQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 559 (813)
Q Consensus 483 ~~~~~~~i~g~~~~k~~---L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~ 559 (813)
..-++++++|++++... |.+++ .-....+++|||||||||||||+.||+..+..|..+++-.
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v-------------~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-- 83 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAV-------------EAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-- 83 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHH-------------hcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--
Confidence 35677888888876432 22222 1223456999999999999999999999999999998742
Q ss_pred hhcccccHHHHHHHHHHHHhCC----CeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEecc-
Q 003525 560 TMWFGESEANVREIFDKARQSA----PCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGAT- 634 (813)
Q Consensus 560 ~~~vg~se~~i~~vF~~a~~~~----p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aT- 634 (813)
.+-+.++.+|++|++.. ..|||+|||+++-.. -+..||-.|+ ++.+++||||
T Consensus 84 -----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~--------------QQD~lLp~vE----~G~iilIGATT 140 (436)
T COG2256 84 -----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA--------------QQDALLPHVE----NGTIILIGATT 140 (436)
T ss_pred -----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh--------------hhhhhhhhhc----CCeEEEEeccC
Confidence 45688999999996543 379999999998432 2355677665 6678888877
Q ss_pred -CCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhc--cCCCC------CcccHHHHHHHcCCCCHHHHHHHHHHH
Q 003525 635 -NRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLR--KSPIS------PDVDLSALARYTHGFSGADITEVCQRA 705 (813)
Q Consensus 635 -n~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~--~~~~~------~~~d~~~la~~~~g~sg~di~~l~~~a 705 (813)
|..-.|++||++ |.. ++.+.+.+.++..+++++.+. ..++. ++.-++.++..+. +|.+.+++..
T Consensus 141 ENPsF~ln~ALlS--R~~-vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~----GD~R~aLN~L 213 (436)
T COG2256 141 ENPSFELNPALLS--RAR-VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSN----GDARRALNLL 213 (436)
T ss_pred CCCCeeecHHHhh--hhh-eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcC----chHHHHHHHH
Confidence 666789999998 774 789999999999999998442 22333 1222455666554 4777666544
Q ss_pred HHHHHHHHHHHhHHHHHhhccCCcccccccccccccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhccC
Q 003525 706 CKYAIRENIEKDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQSRG 778 (813)
Q Consensus 706 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~~~~~~~~y~~~~~~~~~~~~ 778 (813)
-+.+.... ....++.+.+++.+.+..+.-.+..-..|.-++.-+++.||
T Consensus 214 E~~~~~~~------------------------~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRG 262 (436)
T COG2256 214 ELAALSAE------------------------PDEVLILELLEEILQRRSARFDKDGDAHYDLISALHKSVRG 262 (436)
T ss_pred HHHHHhcC------------------------CCcccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhcc
Confidence 33322211 00134477788888777776677777888888888888776
No 91
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.69 E-value=9.1e-16 Score=167.88 Aligned_cols=234 Identities=23% Similarity=0.302 Sum_probs=165.4
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhhhcc
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 563 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~~~v 563 (813)
..+|+++.|.++.++.|...+.... . .-.++.+++||||||||||++|+++|++++..+..++++.+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~-------~-~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~---- 88 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAK-------K-RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE---- 88 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHH-------h-cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc----
Confidence 3478999999999998876654211 0 123456799999999999999999999999888777766432
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccC----------------CCCc
Q 003525 564 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN----------------AKKT 627 (813)
Q Consensus 564 g~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~----------------~~~~ 627 (813)
....+..++.... .++++||||||.+... ..+.|...|+... ...+
T Consensus 89 --~~~~l~~~l~~l~--~~~vl~IDEi~~l~~~--------------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 89 --KPGDLAAILTNLE--EGDVLFIDEIHRLSPV--------------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred --ChHHHHHHHHhcc--cCCEEEEecHhhcchH--------------HHHHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 2234455555443 4579999999998431 1222344444321 1134
Q ss_pred EEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHcCCCCHHHHHHHHHHHH
Q 003525 628 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARYTHGFSGADITEVCQRAC 706 (813)
Q Consensus 628 v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-d~~~la~~~~g~sg~di~~l~~~a~ 706 (813)
+.+|++||++..++++|.+ ||..++.+++|+.+++.+|++..+...++.-+. -+..+++.+.| +++.+..+++.+.
T Consensus 151 ~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~~ 227 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRVR 227 (328)
T ss_pred ceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHHH
Confidence 7889999999999999987 999999999999999999999998776654332 36778887776 5577777787765
Q ss_pred HHHHHHHHHHhHHHHHhhccCCcccccccccccccccHHHHHHHHhhccC---CCCHHHHHHHHHHHHHHhh
Q 003525 707 KYAIRENIEKDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARR---SVSDADIRKYQLFAQTLQQ 775 (813)
Q Consensus 707 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~---s~~~~~~~~y~~~~~~~~~ 775 (813)
..|..+. ...|+.+++..++..+.. .++..+.+.+..+.+.|..
T Consensus 228 ~~a~~~~-------------------------~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~ 274 (328)
T PRK00080 228 DFAQVKG-------------------------DGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGG 274 (328)
T ss_pred HHHHHcC-------------------------CCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCC
Confidence 5554321 125788888888877643 4666777777667776653
No 92
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.2e-16 Score=163.36 Aligned_cols=148 Identities=32% Similarity=0.444 Sum_probs=124.2
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHhC---------CeEEEEechhhhhhhcchhHHHHHHHHHHHHhc---CC--cEE
Q 003525 247 KPPKGILLYGPPGSGKTLIARAVANETG---------AFFFLINGPEIMSKLAGESESNLRKAFEEAEKN---AP--SII 312 (813)
Q Consensus 247 ~~~~~vLL~GppGsGKTtLar~la~~l~---------~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~---~p--~il 312 (813)
.-.+-|||+||||||||+|+++||+.+. ...+.+|+..++++|.+++.+.+..+|+..... .. ..+
T Consensus 175 t~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfv 254 (423)
T KOG0744|consen 175 TWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFV 254 (423)
T ss_pred eeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEE
Confidence 4456799999999999999999999974 235899999999999999999999999986542 22 345
Q ss_pred EeccchhccCCCCCC----chhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHH
Q 003525 313 FIDELDSIAPKREKT----HGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGR 388 (813)
Q Consensus 313 ~iDEid~l~~~~~~~----~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R 388 (813)
+|||++.++..|... .....-|+++++++.+|.++...+|++++|+|-.+.||.++.. |-|-..++++|+...+
T Consensus 255 LIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai 332 (423)
T KOG0744|consen 255 LIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAI 332 (423)
T ss_pred EeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHH
Confidence 799999987665321 1122358999999999999999999999999999999999986 8888899999999999
Q ss_pred HHHHHHHh
Q 003525 389 LEILRIHT 396 (813)
Q Consensus 389 ~~Il~~~~ 396 (813)
.+|++...
T Consensus 333 ~~Ilksci 340 (423)
T KOG0744|consen 333 YEILKSCI 340 (423)
T ss_pred HHHHHHHH
Confidence 99998543
No 93
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.67 E-value=1.9e-15 Score=164.08 Aligned_cols=211 Identities=22% Similarity=0.302 Sum_probs=146.7
Q ss_pred ccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhhhcccc
Q 003525 486 SWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 565 (813)
Q Consensus 486 ~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~~~vg~ 565 (813)
+|+++.|++++++.|...+..... ....+.+++|+||||||||+||+++|++++.++..+.++.+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM--------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 689999999999998876542111 1133456999999999999999999999998876665543321
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccC----------------CCCcEE
Q 003525 566 SEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN----------------AKKTVF 629 (813)
Q Consensus 566 se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~----------------~~~~v~ 629 (813)
...+...+... ..+.++|||||+.+.+. ..+.|+..|+... ....++
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~~--------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 131 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSPA--------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFT 131 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCHH--------------HHHHhhHHHhhhheeeeeccCccccceeecCCCeE
Confidence 12233333332 24579999999998531 2233444443221 123478
Q ss_pred EEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 003525 630 IIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGFSGADITEVCQRACKY 708 (813)
Q Consensus 630 vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~~~g~sg~di~~l~~~a~~~ 708 (813)
+|++||++..+++++.+ ||..++.+++|+.+++.+|++..+...++.-+ .-++.+++.+.| +++.+.++|..+...
T Consensus 132 li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G-~pR~~~~ll~~~~~~ 208 (305)
T TIGR00635 132 LVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRG-TPRIANRLLRRVRDF 208 (305)
T ss_pred EEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-CcchHHHHHHHHHHH
Confidence 99999999999999988 99988999999999999999998876554422 236778888776 447777788766554
Q ss_pred HHHHHHHHhHHHHHhhccCCcccccccccccccccHHHHHHHHhhc
Q 003525 709 AIRENIEKDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYA 754 (813)
Q Consensus 709 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~ 754 (813)
|.... ...|+.+++..++..+
T Consensus 209 a~~~~-------------------------~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 209 AQVRG-------------------------QKIINRDIALKALEML 229 (305)
T ss_pred HHHcC-------------------------CCCcCHHHHHHHHHHh
Confidence 43321 1257777888877765
No 94
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.67 E-value=5.4e-16 Score=183.71 Aligned_cols=176 Identities=23% Similarity=0.294 Sum_probs=131.0
Q ss_pred CCceeeeecCCCCChhHHHHHHHHHh----------CCeEEEEeccchh--hhcccccHHHHHHHHHHHHhCCCeEEEEe
Q 003525 521 PSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELL--TMWFGESEANVREIFDKARQSAPCVLFFD 588 (813)
Q Consensus 521 ~~~gilL~GppGtGKT~la~ala~~~----------~~~~i~v~~~~l~--~~~vg~se~~i~~vF~~a~~~~p~il~iD 588 (813)
...+++|+||||||||++|+++|..+ +..++.++...++ .+|.|+.+..++.+|+.+++..++|||||
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfID 285 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFID 285 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEec
Confidence 34568999999999999999999874 4456666666665 57899999999999999988888999999
Q ss_pred cchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCC-----CCCccccCCCCcccccccCCCCHHH
Q 003525 589 ELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD-----IIDPALLRPGRLDQLIYIPLPDEAS 663 (813)
Q Consensus 589 Eid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~-----~ld~allr~gRf~~~i~~~~p~~~~ 663 (813)
|||.+++.++... ....+.+.|...+ ..+.+.||+|||.++ .+|++|.| ||+ .|+++.|+.++
T Consensus 286 EIh~L~g~g~~~~-----g~~d~~nlLkp~L----~~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~ 353 (758)
T PRK11034 286 EIHTIIGAGAASG-----GQVDAANLIKPLL----SSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEE 353 (758)
T ss_pred cHHHHhccCCCCC-----cHHHHHHHHHHHH----hCCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHH
Confidence 9999987653221 1122333333223 357899999999875 47999999 997 79999999999
Q ss_pred HHHHHHHHhccCCCCCcccHHHH-----HHH-----cCCCCHHHHHHHHHHHHHH
Q 003525 664 RLQIFKACLRKSPISPDVDLSAL-----ARY-----THGFSGADITEVCQRACKY 708 (813)
Q Consensus 664 r~~Il~~~l~~~~~~~~~d~~~l-----a~~-----~~g~sg~di~~l~~~a~~~ 708 (813)
+..||+....++....++.+... +.. ...+-+.....++.+|+..
T Consensus 354 ~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~ 408 (758)
T PRK11034 354 TVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGAR 408 (758)
T ss_pred HHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHh
Confidence 99999998877665555544322 222 2334455777788888754
No 95
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.66 E-value=2.1e-15 Score=152.47 Aligned_cols=233 Identities=23% Similarity=0.331 Sum_probs=169.4
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhhhcc
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 563 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~~~v 563 (813)
.-.|++.+|++++|+.|.-.+...... -...-++|||||||.||||||..+|++++.++-..+|+-+
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r--------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l----- 88 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKR--------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL----- 88 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhc--------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc-----
Confidence 456889999999999998766543322 2334579999999999999999999999999998888876
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccC----------------CCCc
Q 003525 564 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN----------------AKKT 627 (813)
Q Consensus 564 g~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~----------------~~~~ 627 (813)
+....+..++...... +|+|||||+++.+ .+-+.|...|+.+. +...
T Consensus 89 -eK~gDlaaiLt~Le~~--DVLFIDEIHrl~~--------------~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 89 -EKPGDLAAILTNLEEG--DVLFIDEIHRLSP--------------AVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred -cChhhHHHHHhcCCcC--CeEEEehhhhcCh--------------hHHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 3445566677666554 6999999999853 23344556676542 1346
Q ss_pred EEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHcCCCCHHHHHHHHHHHH
Q 003525 628 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVD-LSALARYTHGFSGADITEVCQRAC 706 (813)
Q Consensus 628 v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d-~~~la~~~~g~sg~di~~l~~~a~ 706 (813)
+.+|+||.+.-.|...|.. ||..+..+..++.++..+|+++..+.+.+.-+.+ ..++|+...| |++=-..++++.-
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVR 228 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVR 228 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHH
Confidence 8899999999999999887 9999999999999999999999998887764433 5677777765 6665556777766
Q ss_pred HHHHHHHHHHhHHHHHhhccCCcccccccccccccccHHHHHHHHhhcc---CCCCHHHHHHHHHHHHHHh
Q 003525 707 KYAIRENIEKDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYAR---RSVSDADIRKYQLFAQTLQ 774 (813)
Q Consensus 707 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~---~s~~~~~~~~y~~~~~~~~ 774 (813)
-+|..+. ...|+.+-..+|++.+. -.+..-+.+....+.++|.
T Consensus 229 Dfa~V~~-------------------------~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~ 274 (332)
T COG2255 229 DFAQVKG-------------------------DGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFG 274 (332)
T ss_pred HHHHHhc-------------------------CCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhC
Confidence 6665432 11344444555555542 3455556666666666663
No 96
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1e-15 Score=164.80 Aligned_cols=179 Identities=26% Similarity=0.352 Sum_probs=137.0
Q ss_pred CCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhhhhcc
Q 003525 212 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAG 291 (813)
Q Consensus 212 ~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~~~~g 291 (813)
-+|+.++=-.+.+++|.+=+...+...+.+++.|..-.+|.|||||||||||+++-|+|+.++..++.++..++..
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~---- 273 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL---- 273 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC----
Confidence 4555555445666666665555577888999999999999999999999999999999999999998887655432
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCch---h----HHHHHHHHHHHHhhccccCC--cEEEEEecCCCC
Q 003525 292 ESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHG---E----VERRIVSQLLTLMDGLKSRA--HVIVMGATNRPN 362 (813)
Q Consensus 292 ~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~---~----~~~~v~~~Ll~~ld~~~~~~--~vivi~atn~~~ 362 (813)
... ++.++-... ..+||+|++||+-+.-++.... + ...-..+.|++.+||+.+.. .-++|.|||..+
T Consensus 274 -n~d-Lr~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 274 -DSD-LRHLLLATP--NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred -cHH-HHHHHHhCC--CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 122 666666553 3479999999987653322111 1 11234578999999998765 567777999999
Q ss_pred CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcC
Q 003525 363 SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKN 398 (813)
Q Consensus 363 ~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~ 398 (813)
.|||||.|+||+|..|+++..+..+-..+++.++.-
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGI 385 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCC
Confidence 999999999999999999999999888887766643
No 97
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=8.4e-16 Score=172.67 Aligned_cols=206 Identities=25% Similarity=0.359 Sum_probs=156.9
Q ss_pred ccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchh--------
Q 003525 488 EDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 559 (813)
Q Consensus 488 ~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~-------- 559 (813)
.|..|++++|+++.+.+...... +-....=+||+||||+|||+|++.||..++..|+++.-..+.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 56789999999998876532111 111112389999999999999999999999999998765443
Q ss_pred -hhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhcc-------------CCC
Q 003525 560 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGM-------------NAK 625 (813)
Q Consensus 560 -~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~-------------~~~ 625 (813)
..|+|.....|-+-.++|....| ++++||||.+...- .++.. +.||.-||-- -+.
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~---rGDPa-------SALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSF---RGDPA-------SALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCC---CCChH-------HHHHhhcCHhhcCchhhccccCccch
Confidence 35999999999999999999888 99999999996532 11211 3455544421 134
Q ss_pred CcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHh-----ccCCCCCcccHHHHHHHcCCCCHHHHHH
Q 003525 626 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACL-----RKSPISPDVDLSALARYTHGFSGADITE 700 (813)
Q Consensus 626 ~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l-----~~~~~~~~~d~~~la~~~~g~sg~di~~ 700 (813)
.+|++|+|.|..+.|+.+|+. |+. +|.++-++.++..+|.+.|+ +..++..+ .-.|+..-|..
T Consensus 465 S~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~---------el~i~d~ai~~ 532 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKG---------ELTITDEAIKD 532 (782)
T ss_pred hheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCcc---------ceeecHHHHHH
Confidence 689999999999999999998 996 99999999999999999988 22233221 22377788889
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHh
Q 003525 701 VCQRACKYAIRENIEKDIERERR 723 (813)
Q Consensus 701 l~~~a~~~a~~~~~~~~~~~~~~ 723 (813)
+++.....|-.|++++.+....|
T Consensus 533 iI~~YTREAGVR~LeR~i~ki~R 555 (782)
T COG0466 533 IIRYYTREAGVRNLEREIAKICR 555 (782)
T ss_pred HHHHHhHhhhhhHHHHHHHHHHH
Confidence 99998888888888887765443
No 98
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=8.9e-16 Score=171.13 Aligned_cols=207 Identities=27% Similarity=0.416 Sum_probs=150.1
Q ss_pred cccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchh-------
Q 003525 487 WEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL------- 559 (813)
Q Consensus 487 ~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~------- 559 (813)
-+|..|++++|+++.|.+...... |-...+-++|+||||+|||.++++||..++..|++++-..+.
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 467889999999999887642211 222234489999999999999999999999999988754443
Q ss_pred --hhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhcc-------------CC
Q 003525 560 --TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGM-------------NA 624 (813)
Q Consensus 560 --~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~-------------~~ 624 (813)
..|+|.....+-+..+......| +++|||||++.. +. +++.. +.||..||-- -+
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~--g~-qGDPa-------sALLElLDPEQNanFlDHYLdVp~D 551 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS--GH-QGDPA-------SALLELLDPEQNANFLDHYLDVPVD 551 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC--CC-CCChH-------HHHHHhcChhhccchhhhccccccc
Confidence 35999999999999999988888 999999999973 22 12211 3445444421 23
Q ss_pred CCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcc-----CCCCCcccHHHHHHHcCCCCHHHHH
Q 003525 625 KKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRK-----SPISPDVDLSALARYTHGFSGADIT 699 (813)
Q Consensus 625 ~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~-----~~~~~~~d~~~la~~~~g~sg~di~ 699 (813)
..+|++|||.|..+.|+++|+. |+. +|.++-+..++..+|.+.|+-. -++.++ --..|.+.+.
T Consensus 552 LSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e---------~v~is~~al~ 619 (906)
T KOG2004|consen 552 LSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLIPQALKDCGLKPE---------QVKISDDALL 619 (906)
T ss_pred hhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhhhHHHHHcCCCHH---------hcCccHHHHH
Confidence 5789999999999999999998 996 9999999999999999998832 233321 1224445555
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHh
Q 003525 700 EVCQRACKYAIRENIEKDIERERR 723 (813)
Q Consensus 700 ~l~~~a~~~a~~~~~~~~~~~~~~ 723 (813)
++++..+..|-.|++++.++...|
T Consensus 620 ~lI~~YcrEaGVRnLqk~iekI~R 643 (906)
T KOG2004|consen 620 ALIERYCREAGVRNLQKQIEKICR 643 (906)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 555555555555555555544444
No 99
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.65 E-value=4.7e-15 Score=147.76 Aligned_cols=183 Identities=26% Similarity=0.429 Sum_probs=120.2
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhh
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM 286 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~ 286 (813)
+.+.+.+++++.|+++.+..++-++...... -.+-.+++||||||+||||||+.||++++..+...+++.+-
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~ 87 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE 87 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh
Confidence 4677889999999999999987666542211 12346899999999999999999999999999988886542
Q ss_pred hhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhcccc----------------CC
Q 003525 287 SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKS----------------RA 350 (813)
Q Consensus 287 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~----------------~~ 350 (813)
. ...+..++.... ...||||||||.+-. ...+.|+..|+...- -.
T Consensus 88 k------~~dl~~il~~l~--~~~ILFIDEIHRlnk-----------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 88 K------AGDLAAILTNLK--EGDILFIDEIHRLNK-----------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp S------CHHHHHHHHT----TT-EEEECTCCC--H-----------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred h------HHHHHHHHHhcC--CCcEEEEechhhccH-----------HHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 1 122333444432 356999999998843 345677777764321 13
Q ss_pred cEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCCCc
Q 003525 351 HVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYV 418 (813)
Q Consensus 351 ~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 418 (813)
++.+||+|++...+...|+. ||.....+..++.++...|++.....+.+. ++....++|.++.|..
T Consensus 149 ~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtP 215 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTP 215 (233)
T ss_dssp --EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSH
T ss_pred CceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCCh
Confidence 68899999999999999998 999888999999999999998666555543 2334677787777653
No 100
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.6e-15 Score=157.38 Aligned_cols=176 Identities=31% Similarity=0.570 Sum_probs=130.6
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCc-EEEeccchhccCCCCC
Q 003525 248 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPS-IIFIDELDSIAPKREK 326 (813)
Q Consensus 248 ~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~-il~iDEid~l~~~~~~ 326 (813)
+=++|++|||||||||++|+-||...|..+-...|.++.. .-.+.-..+..+|+-+...... +|||||.|.++..++.
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk 461 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK 461 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch
Confidence 3457999999999999999999999999988888777632 2224456789999998776554 6799999988777654
Q ss_pred Cc-hhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcc----
Q 003525 327 TH-GEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL---- 401 (813)
Q Consensus 327 ~~-~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l---- 401 (813)
.. ++..+..++.|+-.-. .+...++++.+||+|.++|.++.. |++..++|+.|.+++|..+|..++.++-+
T Consensus 462 tymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~ 537 (630)
T KOG0742|consen 462 TYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPAT 537 (630)
T ss_pred hhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCC
Confidence 32 3333333444332211 233467788899999999999987 99999999999999999999877644321
Q ss_pred --------------------cc---chhhHHHHhhcCCCchHHHHHHHHH
Q 003525 402 --------------------AE---DVDLERVAKDTHGYVGSDLAALCTE 428 (813)
Q Consensus 402 --------------------~~---~~~l~~la~~t~g~~~~dl~~l~~~ 428 (813)
.. +..+.+.|..|+||+|.+|..|+..
T Consensus 538 ~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~ 587 (630)
T KOG0742|consen 538 SGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVAS 587 (630)
T ss_pred CCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 11 1135678899999999999888754
No 101
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=9.6e-14 Score=163.01 Aligned_cols=159 Identities=25% Similarity=0.366 Sum_probs=105.4
Q ss_pred ccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhC----------CeEEEEechhhh
Q 003525 217 VGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG----------AFFFLINGPEIM 286 (813)
Q Consensus 217 i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~----------~~~v~v~~~~l~ 286 (813)
+|+.++.++.+.+++.. ...++-+|+|.||+|||.++.-+++... ..++.++-..+.
T Consensus 189 igr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~ 255 (898)
T KOG1051|consen 189 IGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLV 255 (898)
T ss_pred cCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcc
Confidence 34447777777666543 3346789999999999999999998751 233455544333
Q ss_pred --hhhcchhHHHHHHHHHHHHh-cCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCC-
Q 003525 287 --SKLAGESESNLRKAFEEAEK-NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN- 362 (813)
Q Consensus 287 --~~~~g~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~- 362 (813)
.++.|+.+.++..+...+.. ....|||+||++.+...... .+. -...+.|.. ...++.+.+||+|..-.
T Consensus 256 aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~-~~~--~d~~nlLkp----~L~rg~l~~IGatT~e~Y 328 (898)
T KOG1051|consen 256 AGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN-YGA--IDAANLLKP----LLARGGLWCIGATTLETY 328 (898)
T ss_pred cCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc-chH--HHHHHhhHH----HHhcCCeEEEecccHHHH
Confidence 35678899999999999884 45678899999999877644 111 112222222 22345588998776321
Q ss_pred ----CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcC
Q 003525 363 ----SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKN 398 (813)
Q Consensus 363 ----~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~ 398 (813)
.-+|++.+ ||+. +.++.|..+.-..||.....+
T Consensus 329 ~k~iekdPalEr--rw~l-~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 329 RKCIEKDPALER--RWQL-VLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred HHHHhhCcchhh--Ccce-eEeccCcccchhhhhhhhhhh
Confidence 33788888 7754 678888877766666644433
No 102
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.61 E-value=7.2e-15 Score=163.21 Aligned_cols=223 Identities=20% Similarity=0.284 Sum_probs=147.2
Q ss_pred cccccchhhhhhhccccCCCCChhh-hhh-hcC-CCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchh-hhccc
Q 003525 489 DIGGLDNVKRELQETVQYPVEHPEK-FEK-FGM-SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFG 564 (813)
Q Consensus 489 ~i~g~~~~k~~L~~~i~~~~~~~~~-~~~-~~~-~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~-~~~vg 564 (813)
.|+|++.+|+.|...+...++.... ... -+. ....++||+||||||||++|+++|..++.+|+.+++..+. ..|+|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 3899999999886655321111100 000 011 1345699999999999999999999999999999998876 46899
Q ss_pred ccHHH-HHHHHHHH----HhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccC-----------CCCcE
Q 003525 565 ESEAN-VREIFDKA----RQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----------AKKTV 628 (813)
Q Consensus 565 ~se~~-i~~vF~~a----~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----------~~~~v 628 (813)
+.... +..+++.+ ....++||||||||.+..++.+.+...+-.+..+++.||+.|++-. .....
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~ 231 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEF 231 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCe
Confidence 86444 45555432 3346789999999999876433222222234568999999998631 11245
Q ss_pred EEEeccCCCC----------------------------------------------------CCCccccCCCCccccccc
Q 003525 629 FIIGATNRPD----------------------------------------------------IIDPALLRPGRLDQLIYI 656 (813)
Q Consensus 629 ~vi~aTn~~~----------------------------------------------------~ld~allr~gRf~~~i~~ 656 (813)
++|.|+|-.. -+.|+|+ ||+|.+++|
T Consensus 232 ~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~f 309 (412)
T PRK05342 232 IQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVATL 309 (412)
T ss_pred EEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeeec
Confidence 6777776511 0234555 599999999
Q ss_pred CCCCHHHHHHHHHH----Hhc-------cCCCCCccc---HHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH
Q 003525 657 PLPDEASRLQIFKA----CLR-------KSPISPDVD---LSALARY--THGFSGADITEVCQRACKYAIREN 713 (813)
Q Consensus 657 ~~p~~~~r~~Il~~----~l~-------~~~~~~~~d---~~~la~~--~~g~sg~di~~l~~~a~~~a~~~~ 713 (813)
.+.+.++..+|+.. .++ ..++.-.++ +..|++. ..++-.+.|+.+++....-.+.+.
T Consensus 310 ~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~ 382 (412)
T PRK05342 310 EELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFEL 382 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhc
Confidence 99999999999973 332 223332222 4556654 345556788888888777666543
No 103
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.56 E-value=3.2e-14 Score=162.21 Aligned_cols=174 Identities=20% Similarity=0.312 Sum_probs=124.1
Q ss_pred ceeeeecCCCCChhHHHHHHHHHh-----CCeEEEEeccchhhhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhcc
Q 003525 523 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 597 (813)
Q Consensus 523 ~gilL~GppGtGKT~la~ala~~~-----~~~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r 597 (813)
.+++||||+|||||+|++++++++ +..++++++.++.+.++.........-|..... .+++|+|||++.+.++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~- 226 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGK- 226 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCC-
Confidence 469999999999999999999987 455888999888776554432222223333333 4579999999998542
Q ss_pred CCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCC---CCccccCCCCcc--cccccCCCCHHHHHHHHHHHh
Q 003525 598 GSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEASRLQIFKACL 672 (813)
Q Consensus 598 ~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~---ld~allr~gRf~--~~i~~~~p~~~~r~~Il~~~l 672 (813)
......|+..++.+...++.+||+++..|.. +++++.+ ||. .++.+.+||.++|.+|++..+
T Consensus 227 -----------~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~ 293 (450)
T PRK00149 227 -----------ERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKA 293 (450)
T ss_pred -----------HHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHH
Confidence 1234556666666544555677777777655 6788886 885 589999999999999999999
Q ss_pred ccCCCCCc-ccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 003525 673 RKSPISPD-VDLSALARYTHGFSGADITEVCQRACKYAIRE 712 (813)
Q Consensus 673 ~~~~~~~~-~d~~~la~~~~g~sg~di~~l~~~a~~~a~~~ 712 (813)
...++.-+ .-++.||+...| +.++|..++......+...
T Consensus 294 ~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~ 333 (450)
T PRK00149 294 EEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLT 333 (450)
T ss_pred HHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhh
Confidence 76554322 236777776554 7889988888887666543
No 104
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=7.4e-14 Score=160.54 Aligned_cols=187 Identities=20% Similarity=0.287 Sum_probs=136.5
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCe--------------
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 549 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~-------------- 549 (813)
..+|++|+|++.+++.|...+.. -+.+..+||+||+|||||++++++|+.+++.
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDG------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 45799999999999999876542 1234568999999999999999999987542
Q ss_pred ----------EEEEeccchhhhcccccHHHHHHHHHHHHh----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHH
Q 003525 550 ----------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 615 (813)
Q Consensus 550 ----------~i~v~~~~l~~~~vg~se~~i~~vF~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 615 (813)
++.++..+ ...-..++++.+.+.. ....|+||||+|.|- ....|.|
T Consensus 80 r~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--------------~~A~NAL 139 (830)
T PRK07003 80 REIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT--------------NHAFNAM 139 (830)
T ss_pred HHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC--------------HHHHHHH
Confidence 33333221 1123346666665532 345799999999983 2357888
Q ss_pred HHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHcCCCC
Q 003525 616 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGFS 694 (813)
Q Consensus 616 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~d~~~la~~~~g~s 694 (813)
|..|+.. ..++.+|++||.++.|.+.+++ |+ .++.|..++.++..++|+..+++.++.- +..+..|++...| +
T Consensus 140 LKtLEEP--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-s 213 (830)
T PRK07003 140 LKTLEEP--PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-S 213 (830)
T ss_pred HHHHHhc--CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9988854 4577888888889999999987 88 4899999999999999999887766543 2336677777765 6
Q ss_pred HHHHHHHHHHHHHH
Q 003525 695 GADITEVCQRACKY 708 (813)
Q Consensus 695 g~di~~l~~~a~~~ 708 (813)
.++..+++..+..+
T Consensus 214 mRdALsLLdQAia~ 227 (830)
T PRK07003 214 MRDALSLTDQAIAY 227 (830)
T ss_pred HHHHHHHHHHHHHh
Confidence 67777776666543
No 105
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=4.4e-14 Score=160.56 Aligned_cols=186 Identities=22% Similarity=0.329 Sum_probs=137.0
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCC---------------
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 548 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~--------------- 548 (813)
..+|++|+|++.+++.|.+.+... +.+..+||+||+|+|||++|+++|+.+..
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 467899999999999998776531 23456899999999999999999998864
Q ss_pred --------------eEEEEeccchhhhcccccHHHHHHHHHHHH----hCCCeEEEEecchhhhhccCCCCCCCCchHHH
Q 003525 549 --------------NFISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSTGDAGGAADR 610 (813)
Q Consensus 549 --------------~~i~v~~~~l~~~~vg~se~~i~~vF~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~ 610 (813)
.++.+++.. ...-..++++.+... .....|+||||+|.+- ..
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls--------------~~ 139 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT--------------NH 139 (700)
T ss_pred ccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC--------------HH
Confidence 123332221 012344566655543 3446799999999983 34
Q ss_pred HHHHHHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHH
Q 003525 611 VLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVD-LSALARY 689 (813)
Q Consensus 611 vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d-~~~la~~ 689 (813)
..|.||..|+. ...++++|++||.++.|.+.+++ |+ .++.|..++.++..+.++..+.+.++..+.+ +..|++.
T Consensus 140 AaNALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~ 214 (700)
T PRK12323 140 AFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQA 214 (700)
T ss_pred HHHHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 57889999885 34577888888899999999997 88 5899999999999999998887666554333 5667776
Q ss_pred cCCCCHHHHHHHHHHHHH
Q 003525 690 THGFSGADITEVCQRACK 707 (813)
Q Consensus 690 ~~g~sg~di~~l~~~a~~ 707 (813)
..| +.++..+++..+..
T Consensus 215 A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 215 AQG-SMRDALSLTDQAIA 231 (700)
T ss_pred cCC-CHHHHHHHHHHHHH
Confidence 665 77888887776554
No 106
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.56 E-value=3.1e-14 Score=157.19 Aligned_cols=224 Identities=20% Similarity=0.304 Sum_probs=147.9
Q ss_pred ccccccchhhhhhhccccCCCCChhh----hhhhcCC-CCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchh-hh
Q 003525 488 EDIGGLDNVKRELQETVQYPVEHPEK----FEKFGMS-PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TM 561 (813)
Q Consensus 488 ~~i~g~~~~k~~L~~~i~~~~~~~~~----~~~~~~~-~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~-~~ 561 (813)
+.|+|++++++.+...+....+.... ....+.. ...++||+||||||||++|+++|..++.+|..+++..+. ..
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~g 156 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAG 156 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccc
Confidence 34789999999887654211111000 0000111 134699999999999999999999999999999888775 36
Q ss_pred ccccc-HHHHHHHHHHH----HhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccC-----------CC
Q 003525 562 WFGES-EANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----------AK 625 (813)
Q Consensus 562 ~vg~s-e~~i~~vF~~a----~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----------~~ 625 (813)
|+|+. +..+..+++.+ ....++||||||||.+.+++.+.+...+-.+..+++.||+.|+|.. +.
T Consensus 157 yvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~ 236 (413)
T TIGR00382 157 YVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPY 236 (413)
T ss_pred cccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccC
Confidence 88986 44455555533 2345789999999999886543222222233468999999998752 12
Q ss_pred CcEEEEeccCCC---------------------------C-----------------------CCCccccCCCCcccccc
Q 003525 626 KTVFIIGATNRP---------------------------D-----------------------IIDPALLRPGRLDQLIY 655 (813)
Q Consensus 626 ~~v~vi~aTn~~---------------------------~-----------------------~ld~allr~gRf~~~i~ 655 (813)
.+.++|.|+|-. + -+.|+|+ ||+|.+++
T Consensus 237 ~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~ 314 (413)
T TIGR00382 237 QEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIAT 314 (413)
T ss_pred CCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEee
Confidence 357888888861 0 0335555 59999999
Q ss_pred cCCCCHHHHHHHHHHH----hccC-------CCCCccc---HHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH
Q 003525 656 IPLPDEASRLQIFKAC----LRKS-------PISPDVD---LSALARY--THGFSGADITEVCQRACKYAIREN 713 (813)
Q Consensus 656 ~~~p~~~~r~~Il~~~----l~~~-------~~~~~~d---~~~la~~--~~g~sg~di~~l~~~a~~~a~~~~ 713 (813)
|.+.+.++..+|+... ++++ ++.-.++ ++.|++. ...+-.+-|+.+++...+.++.+.
T Consensus 315 f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~ 388 (413)
T TIGR00382 315 LEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDL 388 (413)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhC
Confidence 9999999999998763 2221 3322222 4556654 345566788888888777666654
No 107
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.56 E-value=4.4e-14 Score=159.18 Aligned_cols=173 Identities=20% Similarity=0.322 Sum_probs=122.2
Q ss_pred CceeeeecCCCCChhHHHHHHHHHh-----CCeEEEEeccchhhhcccccHH-HHHHHHHHHHhCCCeEEEEecchhhhh
Q 003525 522 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEA-NVREIFDKARQSAPCVLFFDELDSIAT 595 (813)
Q Consensus 522 ~~gilL~GppGtGKT~la~ala~~~-----~~~~i~v~~~~l~~~~vg~se~-~i~~vF~~a~~~~p~il~iDEid~l~~ 595 (813)
..+++||||+|+|||+|++++++++ +..++++++.++...+...... .+....+..+ .+.+|+|||++.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC
Confidence 3468999999999999999999987 4668889988877655433221 1222222222 247999999999854
Q ss_pred ccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCC---CCccccCCCCcc--cccccCCCCHHHHHHHHHH
Q 003525 596 QRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEASRLQIFKA 670 (813)
Q Consensus 596 ~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~---ld~allr~gRf~--~~i~~~~p~~~~r~~Il~~ 670 (813)
+ ......|+..++.+...+..+||++++.|+. +++.+.+ ||. ..+.+++||.++|..|++.
T Consensus 214 ~------------~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 214 K------------ERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred C------------HHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHH
Confidence 2 1233455666655544455677777776755 5678886 886 5799999999999999999
Q ss_pred HhccCCCCCc-ccHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 003525 671 CLRKSPISPD-VDLSALARYTHGFSGADITEVCQRACKYAIR 711 (813)
Q Consensus 671 ~l~~~~~~~~-~d~~~la~~~~g~sg~di~~l~~~a~~~a~~ 711 (813)
.++..++.-+ .-++.||+... -+.++|..++......|..
T Consensus 280 ~~~~~~~~l~~e~l~~ia~~~~-~~~r~l~~~l~~l~~~a~~ 320 (405)
T TIGR00362 280 KAEEEGLELPDEVLEFIAKNIR-SNVRELEGALNRLLAYASL 320 (405)
T ss_pred HHHHcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH
Confidence 9987665432 33677777655 4789999998888776654
No 108
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.56 E-value=8.2e-14 Score=157.03 Aligned_cols=179 Identities=28% Similarity=0.456 Sum_probs=124.9
Q ss_pred cccccccccchhhhh---hhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhhh
Q 003525 485 VSWEDIGGLDNVKRE---LQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 561 (813)
Q Consensus 485 ~~~~~i~g~~~~k~~---L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~~ 561 (813)
-++++++|++++... |.+.+.. ....+++|+||||||||++|+++|..++..|+.+++...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~--- 72 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS--- 72 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc---
Confidence 467888898887555 5555432 123479999999999999999999999999999887532
Q ss_pred cccccHHHHHHHHHHHHh----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEecc--C
Q 003525 562 WFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGAT--N 635 (813)
Q Consensus 562 ~vg~se~~i~~vF~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aT--n 635 (813)
....++.+++.+.. ....+|||||+|.+.. ...+.|+..|+. +.+++|++| |
T Consensus 73 ----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~--------------~~q~~LL~~le~----~~iilI~att~n 130 (413)
T PRK13342 73 ----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK--------------AQQDALLPHVED----GTITLIGATTEN 130 (413)
T ss_pred ----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH--------------HHHHHHHHHhhc----CcEEEEEeCCCC
Confidence 23456666666542 2457999999998742 234566666653 456677665 3
Q ss_pred CCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccC-----CCCCcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 003525 636 RPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS-----PISPDVDLSALARYTHGFSGADITEVCQRAC 706 (813)
Q Consensus 636 ~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~-----~~~~~~d~~~la~~~~g~sg~di~~l~~~a~ 706 (813)
....+++++++ |+ .++.|++++.++...+++..+... .++ +..+..+++.+.| +.+.+.++++.+.
T Consensus 131 ~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~-~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 131 PSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELD-DEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred hhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34578999998 88 689999999999999999887542 222 2225566666543 5555555555554
No 109
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.55 E-value=4.5e-14 Score=168.83 Aligned_cols=204 Identities=22% Similarity=0.346 Sum_probs=141.7
Q ss_pred ccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchh--------
Q 003525 488 EDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 559 (813)
Q Consensus 488 ~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~-------- 559 (813)
.++.|++++|+.+.+.+.... ..+......++|+||||||||++++.+|+.++.+|+.++.....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~-------~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQS-------RVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHH-------hcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 458899999999987655321 11112334599999999999999999999999999888755432
Q ss_pred -hhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhcc-------------CCC
Q 003525 560 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGM-------------NAK 625 (813)
Q Consensus 560 -~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~-------------~~~ 625 (813)
..|+|.....+.+.+..+....| |+||||||.+...... ...+.||..||.- .+.
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g----------~~~~aLlevld~~~~~~~~d~~~~~~~dl 463 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG----------DPASALLEVLDPEQNVAFSDHYLEVDYDL 463 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC----------CHHHHHHHHhccccEEEEecccccccccC
Confidence 24777777777777777665554 8999999998653210 1346677777631 134
Q ss_pred CcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcc-----CCCC---Cccc---HHHHHH-HcCCC
Q 003525 626 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRK-----SPIS---PDVD---LSALAR-YTHGF 693 (813)
Q Consensus 626 ~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~-----~~~~---~~~d---~~~la~-~~~g~ 693 (813)
.++++|||+|.. .|+++|+. ||. +|.++.++.++..+|.+.++-. .++. -.++ +..+++ .+..+
T Consensus 464 s~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~ 539 (784)
T PRK10787 464 SDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREA 539 (784)
T ss_pred CceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCccc
Confidence 789999999987 49999998 996 8999999999999999988831 1121 1111 334443 23334
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 003525 694 SGADITEVCQRACKYAIREN 713 (813)
Q Consensus 694 sg~di~~l~~~a~~~a~~~~ 713 (813)
-.+.|+.+++..+..++.+.
T Consensus 540 GaR~LeR~I~~i~r~~l~~~ 559 (784)
T PRK10787 540 GVRSLEREISKLCRKAVKQL 559 (784)
T ss_pred CCcHHHHHHHHHHHHHHHHH
Confidence 45677777777655555443
No 110
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.55 E-value=1e-13 Score=167.61 Aligned_cols=164 Identities=23% Similarity=0.348 Sum_probs=122.8
Q ss_pred ccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhh--------
Q 003525 215 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM-------- 286 (813)
Q Consensus 215 ~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~-------- 286 (813)
+++.|+++.++.|.+++...... +-..+..++|+||||||||++|++||+.++.+++.+++..+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 45889999999999887653221 112455799999999999999999999999999888754321
Q ss_pred -hhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccc-------------cCCcE
Q 003525 287 -SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK-------------SRAHV 352 (813)
Q Consensus 287 -~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-------------~~~~v 352 (813)
..|.|.....+...|..+....| ++||||||.+.+..... ..+.|+..++... ...++
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~-------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD-------PASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC-------HHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 24556666667777777765555 89999999998643211 1345666555311 11468
Q ss_pred EEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHh
Q 003525 353 IVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHT 396 (813)
Q Consensus 353 ivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~ 396 (813)
++|+|+|..+.+++++++ || ..++++.|+.+++.+|++.++
T Consensus 465 ~~I~TtN~~~~i~~~L~~--R~-~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLD--RM-EVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEEecCCchhCCHHHhC--Ce-eEEecCCCCHHHHHHHHHHHH
Confidence 899999999999999998 88 478999999999999998764
No 111
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.54 E-value=2.5e-14 Score=173.60 Aligned_cols=167 Identities=20% Similarity=0.353 Sum_probs=125.6
Q ss_pred cccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHh----------CCeEEEEe
Q 003525 485 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 554 (813)
Q Consensus 485 ~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~----------~~~~i~v~ 554 (813)
-.++.+.|.+....++.+.+ ......+++|+||||||||++++++|..+ +.+++.++
T Consensus 175 ~~l~~vigr~~ei~~~i~iL-------------~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVL-------------QRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHH-------------hcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 34567777776544433322 22334569999999999999999999987 56788888
Q ss_pred ccchh--hhcccccHHHHHHHHHHHHh-CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEE
Q 003525 555 GPELL--TMWFGESEANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFII 631 (813)
Q Consensus 555 ~~~l~--~~~vg~se~~i~~vF~~a~~-~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi 631 (813)
...++ .+|.|+.++.++.+|+.... ..++||||||++.+.+.++.. +. ....+.|...+ ..+.+.+|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~-~~-----~d~~~~lkp~l----~~g~l~~I 311 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-GA-----MDAGNMLKPAL----ARGELHCV 311 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc-cc-----hhHHHHhcchh----hcCCCeEE
Confidence 88776 56899999999999998654 568999999999998765322 11 11233333333 46789999
Q ss_pred eccCCCCC-----CCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCC
Q 003525 632 GATNRPDI-----IDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPI 677 (813)
Q Consensus 632 ~aTn~~~~-----ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~ 677 (813)
|||+..+. +|+|+.| ||+ .|+++.|+.+++..|++.....+..
T Consensus 312 gaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~ 359 (857)
T PRK10865 312 GATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYEL 359 (857)
T ss_pred EcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhcc
Confidence 99999874 8999999 998 6889999999999999987765433
No 112
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.54 E-value=2.6e-14 Score=172.76 Aligned_cols=185 Identities=22% Similarity=0.344 Sum_probs=131.5
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhC----------CeEEEE
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ----------ANFISV 553 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~----------~~~i~v 553 (813)
.-.++++.|.++...++.+.+ ......+++|+||||||||++++.+|..+. ..++.+
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l-------------~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDIL-------------LRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHH-------------hcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 345677888877544443322 223345799999999999999999998862 456777
Q ss_pred eccchh--hhcccccHHHHHHHHHHHHh-CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEE
Q 003525 554 KGPELL--TMWFGESEANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFI 630 (813)
Q Consensus 554 ~~~~l~--~~~vg~se~~i~~vF~~a~~-~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~v 630 (813)
+...+. .+|.|+.++.++.+|+.++. ..++|||||||+.+.+.++..+ . .. +-+.|+..| ..+.+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~-~-~d----~~n~Lkp~l----~~G~l~~ 319 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG-Q-GD----AANLLKPAL----ARGELRT 319 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc-c-cc----HHHHhhHHh----hCCCeEE
Confidence 777665 36899999999999999865 4578999999999987654321 1 11 223344443 3668999
Q ss_pred EeccCCCC-----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCC----CC-CcccHHHHHHHcCCCC
Q 003525 631 IGATNRPD-----IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSP----IS-PDVDLSALARYTHGFS 694 (813)
Q Consensus 631 i~aTn~~~-----~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~----~~-~~~d~~~la~~~~g~s 694 (813)
||||+..+ .+|+||.| ||. .|.++.|+.+++..||+...+.+. +. .+..+..++..+.+|-
T Consensus 320 IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred EEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 99998754 38999999 996 899999999999999876665432 21 2233556666655543
No 113
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.53 E-value=1.5e-13 Score=167.21 Aligned_cols=185 Identities=23% Similarity=0.362 Sum_probs=135.9
Q ss_pred cccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHh----------CCeEEEEe
Q 003525 485 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 554 (813)
Q Consensus 485 ~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~----------~~~~i~v~ 554 (813)
-.|+.+.|-++..+++.+.+. ....++++|+||||||||++|+.+|..+ +..++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~-------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILG-------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHc-------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 457777887776666655433 2345679999999999999999999986 36788999
Q ss_pred ccchh--hhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEe
Q 003525 555 GPELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIG 632 (813)
Q Consensus 555 ~~~l~--~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~ 632 (813)
...++ .+|.|+.++.++.+|+.+....++||||||||.+.+.++.. +. ..+.+.|...+. .+.+.+|+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~-g~-----~~~a~lLkp~l~----rg~l~~Ig 312 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE-GA-----IDAANILKPALA----RGELQCIG 312 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC-Cc-----ccHHHHhHHHHh----CCCcEEEE
Confidence 88887 58999999999999999988888999999999998765321 11 112233333332 56789999
Q ss_pred ccCCCC-----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhcc----CCCC-CcccHHHHHHHcCCCCH
Q 003525 633 ATNRPD-----IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRK----SPIS-PDVDLSALARYTHGFSG 695 (813)
Q Consensus 633 aTn~~~-----~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~----~~~~-~~~d~~~la~~~~g~sg 695 (813)
+|+..+ ..|+++.| ||. .|.++.|+.++...|++..... .++. ++.-+..++..+.+|-+
T Consensus 313 aTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 313 ATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred eCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 999764 47899999 997 5899999999999999865432 1222 22235666666666554
No 114
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.53 E-value=2.2e-13 Score=137.97 Aligned_cols=182 Identities=24% Similarity=0.400 Sum_probs=137.5
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhh
Q 003525 208 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS 287 (813)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~ 287 (813)
.+.+-.|++..|+++.+++++=++...-.+ -..-.++||+||||.||||||+.+|++++..+...+|+-+.
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r--------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le- 89 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKR--------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE- 89 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhc--------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc-
Confidence 456778999999999999998777653222 24457899999999999999999999999998888887663
Q ss_pred hhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccc----------------cCCc
Q 003525 288 KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK----------------SRAH 351 (813)
Q Consensus 288 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~----------------~~~~ 351 (813)
....+..++.... ..+|+||||||.+.+. +.+.|...|+.++ .-.+
T Consensus 90 -----K~gDlaaiLt~Le--~~DVLFIDEIHrl~~~-----------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 90 -----KPGDLAAILTNLE--EGDVLFIDEIHRLSPA-----------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred -----ChhhHHHHHhcCC--cCCeEEEehhhhcChh-----------HHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 2233444444433 3479999999999654 3355666666543 1247
Q ss_pred EEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCCCc
Q 003525 352 VIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYV 418 (813)
Q Consensus 352 vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 418 (813)
+.+||+|.+...+...|+. ||.....+..++.++..+|+....+.+.+. ++.....+|.++.|..
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTP 217 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTP 217 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCc
Confidence 8899999999999999998 999999999999999999998766655543 2334567787777754
No 115
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.5e-13 Score=155.47 Aligned_cols=183 Identities=20% Similarity=0.310 Sum_probs=128.9
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCC---------------
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 548 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~--------------- 548 (813)
+.+|+++.|++++++.|...+... ..+.++||+|||||||||+|+++|..+..
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 567899999999988887655431 23456999999999999999999998754
Q ss_pred ---------eEEEEeccchhhhcccccHHHHHHHHHHHHh----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHH
Q 003525 549 ---------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 615 (813)
Q Consensus 549 ---------~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 615 (813)
.++.++++. ...-..++.+.+.+.. ....|+||||+|.+. ...++.|
T Consensus 78 ~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt--------------~~a~~~L 137 (472)
T PRK14962 78 RSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT--------------KEAFNAL 137 (472)
T ss_pred HHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH--------------HHHHHHH
Confidence 244444421 1123456666665543 234699999999983 2346778
Q ss_pred HHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHcCCCC
Q 003525 616 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGFS 694 (813)
Q Consensus 616 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~d~~~la~~~~g~s 694 (813)
|..|+.. .+.+++|++|+.|+.+.+++.+ |+. ++.|.+++.++...+++..++..++.- +..+..|++.+.| +
T Consensus 138 Lk~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G-d 211 (472)
T PRK14962 138 LKTLEEP--PSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG-G 211 (472)
T ss_pred HHHHHhC--CCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-C
Confidence 8888854 3467777777778899999998 885 899999999999999999887655432 2236677776543 4
Q ss_pred HHHHHHHHHH
Q 003525 695 GADITEVCQR 704 (813)
Q Consensus 695 g~di~~l~~~ 704 (813)
.+++.+.+..
T Consensus 212 lR~aln~Le~ 221 (472)
T PRK14962 212 LRDALTMLEQ 221 (472)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 116
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.53 E-value=8.9e-14 Score=160.59 Aligned_cols=210 Identities=24% Similarity=0.332 Sum_probs=142.6
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHh----------CCeEEEE
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 553 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~----------~~~~i~v 553 (813)
..+|+++.|++...+.|+..+.. ..+.+++|+||||||||++|+++...+ +.+|+.+
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~i 127 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEI 127 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEE
Confidence 46788999999888877644211 124579999999999999999998753 3578888
Q ss_pred eccch-------hhhcccccHHHH----------------HHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHH
Q 003525 554 KGPEL-------LTMWFGESEANV----------------REIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADR 610 (813)
Q Consensus 554 ~~~~l-------~~~~vg~se~~i----------------~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~ 610 (813)
++... ....+|.....+ ...+..+ ...+||||||+.+.. .
T Consensus 128 d~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L~~--------------~ 190 (531)
T TIGR02902 128 DATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGELHP--------------V 190 (531)
T ss_pred ccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhCCH--------------H
Confidence 87531 111111100000 0112222 236999999999843 3
Q ss_pred HHHHHHHHHhccC---------------------------CCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHH
Q 003525 611 VLNQLLTEMDGMN---------------------------AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEAS 663 (813)
Q Consensus 611 vl~~lL~~ld~~~---------------------------~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~ 663 (813)
.++.||..|+... ..+-.+|++|||.|+.|+|++++ |+. .|+|++++.++
T Consensus 191 ~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~ee 267 (531)
T TIGR02902 191 QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEE 267 (531)
T ss_pred HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHH
Confidence 5566666664310 11224556667889999999998 885 78899999999
Q ss_pred HHHHHHHHhccCCCCCcc-cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCcccccccccccccc
Q 003525 664 RLQIFKACLRKSPISPDV-DLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERERRKMENPEAMEEDEVDDVDEI 742 (813)
Q Consensus 664 r~~Il~~~l~~~~~~~~~-d~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 742 (813)
+..|++..+++.++.-+. -++.++..+ .+++++.++|+.|+..|..+. ...|
T Consensus 268 i~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~~-------------------------~~~I 320 (531)
T TIGR02902 268 IKEIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGEG-------------------------RKRI 320 (531)
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhCC-------------------------CcEE
Confidence 999999999877654222 245555554 389999999999988775432 1269
Q ss_pred cHHHHHHHHhh
Q 003525 743 KAVHFEESMKY 753 (813)
Q Consensus 743 ~~~~f~~a~~~ 753 (813)
+.+|++.++..
T Consensus 321 t~~dI~~vl~~ 331 (531)
T TIGR02902 321 LAEDIEWVAEN 331 (531)
T ss_pred cHHHHHHHhCC
Confidence 99999999864
No 117
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.52 E-value=6.6e-14 Score=154.88 Aligned_cols=186 Identities=22% Similarity=0.338 Sum_probs=128.8
Q ss_pred ccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCe----------------
Q 003525 486 SWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN---------------- 549 (813)
Q Consensus 486 ~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~---------------- 549 (813)
.|++|+|++.+++.|++.+..+..+. ..++...+.++||+||+|+|||++|+++|..+...
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~---~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADV---AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccc---cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 58999999999999999887654322 22344456779999999999999999999876332
Q ss_pred -------EEEEeccchhhhcccccHHHHHHHHHHHHhC----CCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHH
Q 003525 550 -------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTE 618 (813)
Q Consensus 550 -------~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ 618 (813)
+..+.. +-.+ -.-..|+.+++.+... ...|+||||+|.+.. ...|.||..
T Consensus 80 ~~~~hpD~~~i~~-~~~~----i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~--------------~aanaLLk~ 140 (394)
T PRK07940 80 LAGTHPDVRVVAP-EGLS----IGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE--------------RAANALLKA 140 (394)
T ss_pred hcCCCCCEEEecc-cccc----CCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH--------------HHHHHHHHH
Confidence 112211 1001 1234578888777543 346999999999832 245888898
Q ss_pred HhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHH
Q 003525 619 MDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADI 698 (813)
Q Consensus 619 ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di 698 (813)
|+... .+.++|++| +.++.|.|.+++ |+ ..++|++|+.++..+++... .+++ ......++..+.|..+..+
T Consensus 141 LEep~-~~~~fIL~a-~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~---~~~~-~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 141 VEEPP-PRTVWLLCA-PSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRR---DGVD-PETARRAARASQGHIGRAR 211 (394)
T ss_pred hhcCC-CCCeEEEEE-CChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHh---cCCC-HHHHHHHHHHcCCCHHHHH
Confidence 88542 234455544 448999999998 88 48999999999888777632 2343 2346678888888777665
Q ss_pred HHHH
Q 003525 699 TEVC 702 (813)
Q Consensus 699 ~~l~ 702 (813)
.-+.
T Consensus 212 ~l~~ 215 (394)
T PRK07940 212 RLAT 215 (394)
T ss_pred HHhc
Confidence 5443
No 118
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.52 E-value=9.1e-14 Score=150.91 Aligned_cols=176 Identities=27% Similarity=0.408 Sum_probs=130.2
Q ss_pred cccccchhhhhhhccccCCCCChhhhhhh-cCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchh-hhccc-c
Q 003525 489 DIGGLDNVKRELQETVQYPVEHPEKFEKF-GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFG-E 565 (813)
Q Consensus 489 ~i~g~~~~k~~L~~~i~~~~~~~~~~~~~-~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~-~~~vg-~ 565 (813)
.|.|++++|+.+...+...+........+ .-..+++++|+||||||||++|+++|..++.+|+.+++.++. ..|+| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 47899999988866554321111110000 112457899999999999999999999999999999999887 47888 5
Q ss_pred cHHHHHHHHHHHH-------------------------------------------------------------------
Q 003525 566 SEANVREIFDKAR------------------------------------------------------------------- 578 (813)
Q Consensus 566 se~~i~~vF~~a~------------------------------------------------------------------- 578 (813)
.+..++.+|..|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 6777777777660
Q ss_pred ------------------------------------------------------------------------hCCCeEEE
Q 003525 579 ------------------------------------------------------------------------QSAPCVLF 586 (813)
Q Consensus 579 ------------------------------------------------------------------------~~~p~il~ 586 (813)
.....|+|
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01235999
Q ss_pred EecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccC--------CCCcEEEEeccC----CCCCCCccccCCCCccccc
Q 003525 587 FDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN--------AKKTVFIIGATN----RPDIIDPALLRPGRLDQLI 654 (813)
Q Consensus 587 iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~--------~~~~v~vi~aTn----~~~~ld~allr~gRf~~~i 654 (813)
|||||+++.+.++.+.+ -....|+..||..|+|-. ..+++++||+.. .|+.|=|.|. |||..++
T Consensus 253 iDEiDKIa~~~~~~~~D--vS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v 328 (441)
T TIGR00390 253 IDEIDKIAKKGESSGAD--VSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRV 328 (441)
T ss_pred EEchhhhcccCCCCCCC--CCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEE
Confidence 99999999765333222 234558999999999842 346788888774 4666777777 7999999
Q ss_pred ccCCCCHHHHHHHH
Q 003525 655 YIPLPDEASRLQIF 668 (813)
Q Consensus 655 ~~~~p~~~~r~~Il 668 (813)
.+.+++.++...||
T Consensus 329 ~L~~L~~edL~rIL 342 (441)
T TIGR00390 329 ELQALTTDDFERIL 342 (441)
T ss_pred ECCCCCHHHHHHHh
Confidence 99999999999988
No 119
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=1.2e-13 Score=153.73 Aligned_cols=184 Identities=20% Similarity=0.261 Sum_probs=131.4
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCe--------------
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 549 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~-------------- 549 (813)
..+|++++|++.+...|...+... ..+..+||+||+|||||++|+++|..++..
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC 81 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC 81 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH
Confidence 467899999999998887765421 234458999999999999999999987642
Q ss_pred ----------EEEEeccchhhhcccccHHHHHHHHHHHH----hCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHH
Q 003525 550 ----------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 615 (813)
Q Consensus 550 ----------~i~v~~~~l~~~~vg~se~~i~~vF~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 615 (813)
++.+++.. ...-..++++.+.+. .....|+||||+|.+- ...++.|
T Consensus 82 ~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls--------------~~A~NAL 141 (484)
T PRK14956 82 LEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT--------------DQSFNAL 141 (484)
T ss_pred HHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC--------------HHHHHHH
Confidence 22222211 011234555554443 3445799999999983 3467889
Q ss_pred HHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHcCCCC
Q 003525 616 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGFS 694 (813)
Q Consensus 616 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~d~~~la~~~~g~s 694 (813)
|..|+. ....+++|++|+.++.|.+.+++ |+. ++.|.+++.++..+.++..+.+.++.- +..+..+++...| +
T Consensus 142 LKtLEE--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d 215 (484)
T PRK14956 142 LKTLEE--PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-S 215 (484)
T ss_pred HHHhhc--CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-h
Confidence 999875 34678888899999999999998 885 788999999888999998887766542 2335666666554 5
Q ss_pred HHHHHHHHHHH
Q 003525 695 GADITEVCQRA 705 (813)
Q Consensus 695 g~di~~l~~~a 705 (813)
.++..+++..+
T Consensus 216 ~RdAL~lLeq~ 226 (484)
T PRK14956 216 VRDMLSFMEQA 226 (484)
T ss_pred HHHHHHHHHHH
Confidence 56666665544
No 120
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.52 E-value=6e-13 Score=145.68 Aligned_cols=192 Identities=22% Similarity=0.369 Sum_probs=135.1
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhh
Q 003525 208 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS 287 (813)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~ 287 (813)
.+.+..|+++.|.++.++.+..++..... .-.++.+++|+||||||||++|+++|++++..+..++++.+.
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~- 88 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE- 88 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc-
Confidence 56677999999999999999887753111 113467899999999999999999999999888777765432
Q ss_pred hhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccc----------------cCCc
Q 003525 288 KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK----------------SRAH 351 (813)
Q Consensus 288 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~----------------~~~~ 351 (813)
....+..++... ..++++||||+|.+... . .+.|...|+... .-..
T Consensus 89 -----~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~-------~----~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 89 -----KPGDLAAILTNL--EEGDVLFIDEIHRLSPV-------V----EEILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred -----ChHHHHHHHHhc--ccCCEEEEecHhhcchH-------H----HHHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 112233344332 34679999999988532 1 122333343221 1134
Q ss_pred EEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCCCchHHHHHHHHHH
Q 003525 352 VIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYVGSDLAALCTEA 429 (813)
Q Consensus 352 vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a 429 (813)
+.+|++|+++..+++.+++ ||...+.++.|+.+++.+|++.......+. ++..+..++..+.|+. ..+..+++..
T Consensus 151 ~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~ 226 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRV 226 (328)
T ss_pred ceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHH
Confidence 7789999999999999987 888889999999999999999776654432 3345788888888876 3344444433
No 121
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.51 E-value=2e-13 Score=153.75 Aligned_cols=169 Identities=12% Similarity=0.215 Sum_probs=114.7
Q ss_pred CceeeeecCCCCChhHHHHHHHHHh---CCeEEEEeccchhhhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccC
Q 003525 522 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 598 (813)
Q Consensus 522 ~~gilL~GppGtGKT~la~ala~~~---~~~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~ 598 (813)
..+++||||+|+|||+|++++++.+ +..+++++..++...+.......-...|..... ..++|+|||++.+.++
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~~k-- 217 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFSGK-- 217 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhcCC--
Confidence 3569999999999999999999876 567888888777655433221112234555443 4579999999998542
Q ss_pred CCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCC---CCCccccCCCCcc--cccccCCCCHHHHHHHHHHHhc
Q 003525 599 SSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD---IIDPALLRPGRLD--QLIYIPLPDEASRLQIFKACLR 673 (813)
Q Consensus 599 ~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~---~ld~allr~gRf~--~~i~~~~p~~~~r~~Il~~~l~ 673 (813)
......|+..++.+...++.+|+++++.|. .+++.|.+ ||. .++.+++|+.++|.+|++..++
T Consensus 218 ----------~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 218 ----------GATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAE 285 (445)
T ss_pred ----------hhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHH
Confidence 112334444444443334556666666664 46788887 885 7889999999999999999998
Q ss_pred cCCCCCccc-HHHHHHHcCCCCHHHHHHHHHHHH
Q 003525 674 KSPISPDVD-LSALARYTHGFSGADITEVCQRAC 706 (813)
Q Consensus 674 ~~~~~~~~d-~~~la~~~~g~sg~di~~l~~~a~ 706 (813)
..++.-+.+ ++.|+.... -+.++|.+.+...+
T Consensus 286 ~~~~~l~~evl~~la~~~~-~dir~L~g~l~~l~ 318 (445)
T PRK12422 286 ALSIRIEETALDFLIEALS-SNVKSLLHALTLLA 318 (445)
T ss_pred HcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHH
Confidence 776543333 455666544 35677777766664
No 122
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.51 E-value=1.6e-13 Score=154.94 Aligned_cols=174 Identities=17% Similarity=0.257 Sum_probs=119.5
Q ss_pred ceeeeecCCCCChhHHHHHHHHHh-----CCeEEEEeccchhhhcccccH-HHHHHHHHHHHhCCCeEEEEecchhhhhc
Q 003525 523 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESE-ANVREIFDKARQSAPCVLFFDELDSIATQ 596 (813)
Q Consensus 523 ~gilL~GppGtGKT~la~ala~~~-----~~~~i~v~~~~l~~~~vg~se-~~i~~vF~~a~~~~p~il~iDEid~l~~~ 596 (813)
.+++||||+|||||+|++++++++ +..++++++.+++..+..... ..+.. |.......+.+|+|||++.+.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 469999999999999999999986 346788888887765543221 12222 33333335789999999998542
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCC---CCccccCCCCc--ccccccCCCCHHHHHHHHHHH
Q 003525 597 RGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDI---IDPALLRPGRL--DQLIYIPLPDEASRLQIFKAC 671 (813)
Q Consensus 597 r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~---ld~allr~gRf--~~~i~~~~p~~~~r~~Il~~~ 671 (813)
......|+..++.+...++.+||++++.|+. +++.+.+ || ..++.+.+||.++|.+|++..
T Consensus 210 ------------~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 210 ------------TGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred ------------HHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHH
Confidence 1123445555555544455677777777765 4567776 66 468889999999999999999
Q ss_pred hccCCCCCcc-cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 003525 672 LRKSPISPDV-DLSALARYTHGFSGADITEVCQRACKYAIRE 712 (813)
Q Consensus 672 l~~~~~~~~~-d~~~la~~~~g~sg~di~~l~~~a~~~a~~~ 712 (813)
++..++.-+. -++.||+...+ +.++|..++......+...
T Consensus 276 ~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~ 316 (440)
T PRK14088 276 LEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETT 316 (440)
T ss_pred HHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHh
Confidence 8754443222 26677776553 7788988888876665543
No 123
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.51 E-value=7.7e-14 Score=151.56 Aligned_cols=177 Identities=25% Similarity=0.407 Sum_probs=130.6
Q ss_pred cccccchhhhhhhccccCCCCChhhhhhhc-CCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhh-hccc-c
Q 003525 489 DIGGLDNVKRELQETVQYPVEHPEKFEKFG-MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFG-E 565 (813)
Q Consensus 489 ~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~-~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~-~~vg-~ 565 (813)
.|.|++++|+.+...+...+.......... -..+.++||+||||||||++|+++|..++.+|+.+++.++.. .|+| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 488999999988766532111110000000 012467999999999999999999999999999999998885 6999 5
Q ss_pred cHHHHHHHHHHHH-------------------------------------------------------------------
Q 003525 566 SEANVREIFDKAR------------------------------------------------------------------- 578 (813)
Q Consensus 566 se~~i~~vF~~a~------------------------------------------------------------------- 578 (813)
.+..++.+|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 5677777777771
Q ss_pred ---h--------------------------------------------------------------------CCCeEEEE
Q 003525 579 ---Q--------------------------------------------------------------------SAPCVLFF 587 (813)
Q Consensus 579 ---~--------------------------------------------------------------------~~p~il~i 587 (813)
. ..-.|+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 12359999
Q ss_pred ecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccC--------CCCcEEEEeccC----CCCCCCccccCCCCcccccc
Q 003525 588 DELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN--------AKKTVFIIGATN----RPDIIDPALLRPGRLDQLIY 655 (813)
Q Consensus 588 DEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~--------~~~~v~vi~aTn----~~~~ld~allr~gRf~~~i~ 655 (813)
||||+++.+.++++. +-....|+..||..|+|-. ..+++++||+.. .|+.|-|.|. |||..++.
T Consensus 256 DEiDKIa~~~~~~~~--DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~ 331 (443)
T PRK05201 256 DEIDKIAARGGSSGP--DVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVE 331 (443)
T ss_pred EcchhhcccCCCCCC--CCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEE
Confidence 999999987543222 2334568999999999842 346788888763 4666778888 69999999
Q ss_pred cCCCCHHHHHHHHH
Q 003525 656 IPLPDEASRLQIFK 669 (813)
Q Consensus 656 ~~~p~~~~r~~Il~ 669 (813)
+.+++.++...||.
T Consensus 332 L~~L~~~dL~~ILt 345 (443)
T PRK05201 332 LDALTEEDFVRILT 345 (443)
T ss_pred CCCCCHHHHHHHhc
Confidence 99999999999983
No 124
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.51 E-value=3e-13 Score=143.44 Aligned_cols=176 Identities=28% Similarity=0.453 Sum_probs=125.4
Q ss_pred cccCCCCcccccChHHHH---HHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEech
Q 003525 207 ERLNEVGYDDVGGVRKQM---AQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGP 283 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~---~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~ 283 (813)
.++.+-+++++.|+++.+ .-|+++++. ..-.+++|||||||||||||++||+.++..|..+++.
T Consensus 16 ~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv 82 (436)
T COG2256 16 ERLRPKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV 82 (436)
T ss_pred HHhCCCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc
Confidence 456788999999999887 446777653 2345799999999999999999999999999999863
Q ss_pred hhhhhhcchhHHHHHHHHHHHHhc----CCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecC
Q 003525 284 EIMSKLAGESESNLRKAFEEAEKN----APSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATN 359 (813)
Q Consensus 284 ~l~~~~~g~~~~~l~~vf~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn 359 (813)
. ..-+.++.++++++.. ...|||+||||.+-... .+.|+..++ ++.+++||+|.
T Consensus 83 ~-------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q-----------QD~lLp~vE----~G~iilIGATT 140 (436)
T COG2256 83 T-------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ-----------QDALLPHVE----NGTIILIGATT 140 (436)
T ss_pred c-------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhh-----------hhhhhhhhc----CCeEEEEeccC
Confidence 2 2356788899888553 24799999999985443 244566554 45778887653
Q ss_pred --CCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHh--cCCccc------cchhhHHHHhhcCCCchH
Q 003525 360 --RPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHT--KNMKLA------EDVDLERVAKDTHGYVGS 420 (813)
Q Consensus 360 --~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~--~~~~l~------~~~~l~~la~~t~g~~~~ 420 (813)
+--.+.++|++ |. +.+++.+.+.++...+++.-+ ..-.+. ++..+..++..+.|-..+
T Consensus 141 ENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 141 ENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred CCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 44578999998 42 457888999998888887622 122222 333456666666664443
No 125
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.50 E-value=2.8e-13 Score=154.71 Aligned_cols=174 Identities=14% Similarity=0.269 Sum_probs=122.5
Q ss_pred ceeeeecCCCCChhHHHHHHHHHh-----CCeEEEEeccchhhhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhcc
Q 003525 523 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 597 (813)
Q Consensus 523 ~gilL~GppGtGKT~la~ala~~~-----~~~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r 597 (813)
..++|||++|||||+|++++++++ +..+++++..++...++..........|++-.. .+++|+||||+.+..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 349999999999999999999986 456789999998877665433333334554433 35899999999986431
Q ss_pred CCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCC---CCCccccCCCCc--ccccccCCCCHHHHHHHHHHHh
Q 003525 598 GSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD---IIDPALLRPGRL--DQLIYIPLPDEASRLQIFKACL 672 (813)
Q Consensus 598 ~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~---~ld~allr~gRf--~~~i~~~~p~~~~r~~Il~~~l 672 (813)
.....|+..++.+...++.+||++...|. .+++.|.+ || ..++.+..||.+.|.+||+.++
T Consensus 394 ------------~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 394 ------------STQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred ------------HHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 12344555555554444555554444443 46788887 76 5777999999999999999999
Q ss_pred ccCCCCCccc-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 003525 673 RKSPISPDVD-LSALARYTHGFSGADITEVCQRACKYAIRE 712 (813)
Q Consensus 673 ~~~~~~~~~d-~~~la~~~~g~sg~di~~l~~~a~~~a~~~ 712 (813)
+..++.-..+ ++.|+.... -+.++|..++......+...
T Consensus 460 ~~r~l~l~~eVi~yLa~r~~-rnvR~LegaL~rL~a~a~~~ 499 (617)
T PRK14086 460 VQEQLNAPPEVLEFIASRIS-RNIRELEGALIRVTAFASLN 499 (617)
T ss_pred HhcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHhh
Confidence 8766654333 566666554 47889998888876666543
No 126
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.50 E-value=9.1e-13 Score=143.04 Aligned_cols=187 Identities=23% Similarity=0.351 Sum_probs=129.3
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhhhhcch
Q 003525 213 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGE 292 (813)
Q Consensus 213 ~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~~~~g~ 292 (813)
+|+++.|.++.+++++.++...... -..+.+++|+||||||||+|++++|.+++..+..++++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 5789999999999998887542211 134567999999999999999999999988776666543321
Q ss_pred hHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccc----------------cCCcEEEEE
Q 003525 293 SESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK----------------SRAHVIVMG 356 (813)
Q Consensus 293 ~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~----------------~~~~vivi~ 356 (813)
...+...+... ..+.++||||++.+.+.. .+.|...|+... ....+.+++
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~-----------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSPAV-----------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCHHH-----------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 11222222222 346799999999885421 122444443222 113478889
Q ss_pred ecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCCCchHHHHHHHHHH
Q 003525 357 ATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYVGSDLAALCTEA 429 (813)
Q Consensus 357 atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a 429 (813)
+|+++..+++++++ ||...+.+..|+.++..++++.......+. ++..+..++..+.|+.. .+..++..+
T Consensus 135 ~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR-~~~~ll~~~ 205 (305)
T TIGR00635 135 ATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPR-IANRLLRRV 205 (305)
T ss_pred ecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcc-hHHHHHHHH
Confidence 99999999999987 888888999999999999999776543322 33456788888888763 334555544
No 127
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=4.4e-13 Score=152.88 Aligned_cols=186 Identities=20% Similarity=0.285 Sum_probs=135.0
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCC---------------
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 548 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~--------------- 548 (813)
..+|++++|++.+++.|...+.. -+.+..+||+||+|+|||++|+++|..+++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALER------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 46799999999999998876542 133467899999999999999999998754
Q ss_pred ---------eEEEEeccchhhhcccccHHHHHHHHHHHHh----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHH
Q 003525 549 ---------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 615 (813)
Q Consensus 549 ---------~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 615 (813)
.++.+++++- ..-..+|.+...+.. ....|+||||+|.+- ....+.|
T Consensus 79 ~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS--------------~~A~NAL 138 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS--------------THSFNAL 138 (702)
T ss_pred HHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC--------------HHHHHHH
Confidence 2344443321 123456666655432 345799999999973 2356888
Q ss_pred HHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHcCCCC
Q 003525 616 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARYTHGFS 694 (813)
Q Consensus 616 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-d~~~la~~~~g~s 694 (813)
|..|+.. ...+.+|++|+.+..+.+.+++ |+ .++.|.+++.++..+.++..+++.++.-+. .+..+++.+.| +
T Consensus 139 LKtLEEP--P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-d 212 (702)
T PRK14960 139 LKTLEEP--PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-S 212 (702)
T ss_pred HHHHhcC--CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 8888854 3456677777778888888876 88 489999999999999999998877655333 36667776655 7
Q ss_pred HHHHHHHHHHHHH
Q 003525 695 GADITEVCQRACK 707 (813)
Q Consensus 695 g~di~~l~~~a~~ 707 (813)
.+++.+++..+..
T Consensus 213 LRdALnLLDQaIa 225 (702)
T PRK14960 213 LRDALSLTDQAIA 225 (702)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766554
No 128
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=6.2e-13 Score=155.91 Aligned_cols=185 Identities=21% Similarity=0.284 Sum_probs=132.1
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeE-------------
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF------------- 550 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~------------- 550 (813)
..+|++|+|++.+++.|+..+... +.+..+||+||+|||||++|+++|..+....
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 467999999999999887765421 2345579999999999999999999986531
Q ss_pred -----------EEEeccchhhhcccccHHHHHHHHHHHH----hCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHH
Q 003525 551 -----------ISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 615 (813)
Q Consensus 551 -----------i~v~~~~l~~~~vg~se~~i~~vF~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 615 (813)
+.+++.+ ...-..+|++.+.+. .....|+||||+|.+- ...++.|
T Consensus 80 ~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT--------------~eAqNAL 139 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS--------------RSSFNAL 139 (944)
T ss_pred HHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC--------------HHHHHHH
Confidence 1121110 011234555554443 3345799999999982 4578999
Q ss_pred HHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHcCCCC
Q 003525 616 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGFS 694 (813)
Q Consensus 616 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~~~g~s 694 (813)
|..|+.. ...+.+|++|+.+..|-+.+++ |+ .++.|.+++.++..+.|+..+...++.-+ ..+..|++.+.| +
T Consensus 140 LKtLEEP--P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d 213 (944)
T PRK14949 140 LKTLEEP--PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-S 213 (944)
T ss_pred HHHHhcc--CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9999854 4456666778778888888887 88 58999999999999999988876554422 236667777665 7
Q ss_pred HHHHHHHHHHHH
Q 003525 695 GADITEVCQRAC 706 (813)
Q Consensus 695 g~di~~l~~~a~ 706 (813)
.+++.++|..+.
T Consensus 214 ~R~ALnLLdQal 225 (944)
T PRK14949 214 MRDALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHHHH
Confidence 788888887665
No 129
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=4.6e-13 Score=148.27 Aligned_cols=186 Identities=23% Similarity=0.312 Sum_probs=132.2
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCe--------------
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 549 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~-------------- 549 (813)
+.+|++|.|++.+++.|...+.. + +.+..++|+||+|+|||++|+++|..+...
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~-----------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSL-----------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHc-----------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 46799999999999988766542 1 234568999999999999999999987532
Q ss_pred ----------EEEEeccchhhhcccccHHHHHHHHHHHHhC----CCeEEEEecchhhhhccCCCCCCCCchHHHHHHHH
Q 003525 550 ----------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 615 (813)
Q Consensus 550 ----------~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 615 (813)
++.+++.. ...-..++.+.+.+... ...|+||||+|.+- ....+.|
T Consensus 80 ~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~--------------~~a~naL 139 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS--------------RHSFNAL 139 (363)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC--------------HHHHHHH
Confidence 22222211 01234566666655432 34699999999872 2356778
Q ss_pred HHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHcCCCC
Q 003525 616 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGFS 694 (813)
Q Consensus 616 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~d~~~la~~~~g~s 694 (813)
|..|+.. ...+.+|++|+.++.+.+.+.+ |+ ..+.|++|+.++..++++..+++.++.- +..+..+++.+.| +
T Consensus 140 Lk~lEe~--~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~ 213 (363)
T PRK14961 140 LKTLEEP--PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-S 213 (363)
T ss_pred HHHHhcC--CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 8888854 3456666677778888888886 87 4889999999999999999887766432 2346667777665 7
Q ss_pred HHHHHHHHHHHHH
Q 003525 695 GADITEVCQRACK 707 (813)
Q Consensus 695 g~di~~l~~~a~~ 707 (813)
.+++.+++..+..
T Consensus 214 ~R~al~~l~~~~~ 226 (363)
T PRK14961 214 MRDALNLLEHAIN 226 (363)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776653
No 130
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.49 E-value=4.5e-13 Score=139.00 Aligned_cols=207 Identities=21% Similarity=0.369 Sum_probs=138.7
Q ss_pred ceeeeecCCCCChhHHHHHHHHHhCCe---EEEEeccchhhhcccccHHHHHHHHHHHHhC-----CCeEEEEecchhhh
Q 003525 523 KGVLFYGPPGCGKTLLAKAIANECQAN---FISVKGPELLTMWFGESEANVREIFDKARQS-----APCVLFFDELDSIA 594 (813)
Q Consensus 523 ~gilL~GppGtGKT~la~ala~~~~~~---~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~-----~p~il~iDEid~l~ 594 (813)
.+++|+||||||||+||+.|+...+.+ |+.++... ..-+.+|.+|+.+... ...|||||||+.+.
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN 235 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN 235 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh
Confidence 469999999999999999999998766 77766543 3456789999988652 35799999999985
Q ss_pred hccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEecc--CCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHh
Q 003525 595 TQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGAT--NRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACL 672 (813)
Q Consensus 595 ~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aT--n~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l 672 (813)
.. -...||-..+ .+.+++|+|| |..-.|+.||++ |+- ++.+.....+....||.+.+
T Consensus 236 ks--------------QQD~fLP~VE----~G~I~lIGATTENPSFqln~aLlS--RC~-VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 236 KS--------------QQDTFLPHVE----NGDITLIGATTENPSFQLNAALLS--RCR-VFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred hh--------------hhhcccceec----cCceEEEecccCCCccchhHHHHh--ccc-eeEeccCCHHHHHHHHHHHH
Confidence 42 1234544433 5678888877 555679999998 774 67777788888888888744
Q ss_pred cc-----C---CCCC------cccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCcccccccccc
Q 003525 673 RK-----S---PISP------DVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERERRKMENPEAMEEDEVDD 738 (813)
Q Consensus 673 ~~-----~---~~~~------~~d~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (813)
.. . ++.. +--++.++..++|-.-+.|..+--.+.+...+.. ...
T Consensus 295 a~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~g----------------------~~~ 352 (554)
T KOG2028|consen 295 ASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRSG----------------------QSS 352 (554)
T ss_pred HhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcC----------------------Ccc
Confidence 31 1 2221 1125667776666333333222222111111111 012
Q ss_pred cccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhccCC
Q 003525 739 VDEIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGF 779 (813)
Q Consensus 739 ~~~i~~~~f~~a~~~~~~s~~~~~~~~y~~~~~~~~~~~~~ 779 (813)
...++.+|+++.|+.-.---....-+.|.-++.-+++.||=
T Consensus 353 ~~~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKSmRG~ 393 (554)
T KOG2028|consen 353 RVLLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKSMRGS 393 (554)
T ss_pred cceecHHHHHHHHhhccceecccchhHHHHHHHHHHhhcCC
Confidence 34799999999997655444566778999999999988874
No 131
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.49 E-value=1.3e-13 Score=168.22 Aligned_cols=184 Identities=22% Similarity=0.372 Sum_probs=132.2
Q ss_pred cccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHh----------CCeEEEEe
Q 003525 485 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 554 (813)
Q Consensus 485 ~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~----------~~~~i~v~ 554 (813)
-.++.+.|.++...++.+.+ ......+++|+||||||||++++++|..+ +.+++.++
T Consensus 170 ~~~~~~igr~~ei~~~~~~l-------------~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVL-------------SRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHH-------------hcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 35566777776544443322 22344568999999999999999999886 56678888
Q ss_pred ccchh--hhcccccHHHHHHHHHHHHhC-CCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEE
Q 003525 555 GPELL--TMWFGESEANVREIFDKARQS-APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFII 631 (813)
Q Consensus 555 ~~~l~--~~~vg~se~~i~~vF~~a~~~-~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi 631 (813)
...++ .+|.|+.++.++.+|+.+... .++|||||||+.+.+.+... +. ..+.+.|...+ ..+.+.+|
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~-----~~-~d~~~~Lk~~l----~~g~i~~I 306 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE-----GA-MDAGNMLKPAL----ARGELHCI 306 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc-----ch-hHHHHHhchhh----hcCceEEE
Confidence 77775 578999999999999998654 58999999999998654221 11 12333333332 46679999
Q ss_pred eccCCCC-----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcc-----cHHHHHHHcCCCC
Q 003525 632 GATNRPD-----IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-----DLSALARYTHGFS 694 (813)
Q Consensus 632 ~aTn~~~-----~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-----d~~~la~~~~g~s 694 (813)
++|+..+ .+|+++.| ||. .|+++.|+.+++..|++.....+.....+ .+...+..+.+|-
T Consensus 307 gaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi 376 (852)
T TIGR03346 307 GATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYI 376 (852)
T ss_pred EeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccc
Confidence 9999874 47999999 997 58999999999999999887766543332 3444555544443
No 132
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=1.3e-12 Score=151.37 Aligned_cols=186 Identities=22% Similarity=0.317 Sum_probs=133.9
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCe--------------
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 549 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~-------------- 549 (813)
..+|++|+|++.+++.|...+.. + +.+..+||+||+|+|||++|+++|..+...
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~-----------~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDL-----------G-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 46799999999999988776543 1 234458999999999999999999987652
Q ss_pred ----------EEEEeccchhhhcccccHHHHHHHHHHH----HhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHH
Q 003525 550 ----------FISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 615 (813)
Q Consensus 550 ----------~i~v~~~~l~~~~vg~se~~i~~vF~~a----~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 615 (813)
++.+++..- ..-..++++.+.+ ......|+||||+|.+- ....|.|
T Consensus 80 ~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls--------------~~a~NAL 139 (647)
T PRK07994 80 REIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS--------------RHSFNAL 139 (647)
T ss_pred HHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC--------------HHHHHHH
Confidence 233333210 1123355554443 33456799999999973 3467999
Q ss_pred HHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHcCCCC
Q 003525 616 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGFS 694 (813)
Q Consensus 616 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~~~g~s 694 (813)
|..|+.. ...+++|++|+.++.|.+.+++ |+ ..++|.+++.++....++..++..++..+ ..+..|++.+.| +
T Consensus 140 LKtLEEP--p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s 213 (647)
T PRK07994 140 LKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-S 213 (647)
T ss_pred HHHHHcC--CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9999853 4567777778888888888887 87 68999999999999999998876665433 235667776665 7
Q ss_pred HHHHHHHHHHHHH
Q 003525 695 GADITEVCQRACK 707 (813)
Q Consensus 695 g~di~~l~~~a~~ 707 (813)
.++..+++..|..
T Consensus 214 ~R~Al~lldqaia 226 (647)
T PRK07994 214 MRDALSLTDQAIA 226 (647)
T ss_pred HHHHHHHHHHHHH
Confidence 7777778766543
No 133
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.46 E-value=6.1e-13 Score=157.24 Aligned_cols=181 Identities=24% Similarity=0.373 Sum_probs=120.2
Q ss_pred Ccccccccccchhhh---hhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhh
Q 003525 484 NVSWEDIGGLDNVKR---ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 560 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~---~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~ 560 (813)
..+++++.|++.+.. .|.+.+.. ....+++||||||||||++|+++|+.++..|+.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-- 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-- 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh--
Confidence 456788889887764 34333221 123469999999999999999999999988888776421
Q ss_pred hcccccHHHHHHHHHHHH-----hCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccC
Q 003525 561 MWFGESEANVREIFDKAR-----QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATN 635 (813)
Q Consensus 561 ~~vg~se~~i~~vF~~a~-----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn 635 (813)
..+.++.+++.+. .....++||||||.+.. ...+.|+..++ ...+++|++|+
T Consensus 89 -----~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~--------------~qQdaLL~~lE----~g~IiLI~aTT 145 (725)
T PRK13341 89 -----GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK--------------AQQDALLPWVE----NGTITLIGATT 145 (725)
T ss_pred -----hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH--------------HHHHHHHHHhc----CceEEEEEecC
Confidence 1223444444432 12356999999999742 12455666555 34577777663
Q ss_pred --CCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhc-------cCCCCC-cccHHHHHHHcCCCCHHHHHHHHHHH
Q 003525 636 --RPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLR-------KSPISP-DVDLSALARYTHGFSGADITEVCQRA 705 (813)
Q Consensus 636 --~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~-------~~~~~~-~~d~~~la~~~~g~sg~di~~l~~~a 705 (813)
....+++++++ |. .++.|++++.+++..|++..+. ..++.- +.-+..|++...| +.+++.++++.|
T Consensus 146 enp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a 221 (725)
T PRK13341 146 ENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELA 221 (725)
T ss_pred CChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 33568899997 65 4799999999999999999886 222221 2225667776543 556666666665
Q ss_pred H
Q 003525 706 C 706 (813)
Q Consensus 706 ~ 706 (813)
.
T Consensus 222 ~ 222 (725)
T PRK13341 222 V 222 (725)
T ss_pred H
Confidence 4
No 134
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.46 E-value=9.2e-13 Score=146.78 Aligned_cols=202 Identities=24% Similarity=0.306 Sum_probs=125.8
Q ss_pred ccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhC---------CeEEEEeccch
Q 003525 488 EDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFISVKGPEL 558 (813)
Q Consensus 488 ~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~---------~~~i~v~~~~l 558 (813)
+++.|-++..+.|...+.... . + ..+.+++|+||||||||+++++++..+. ..++++++...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~------~--~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPIL------R--G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHH------c--C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 356666666666655443211 1 1 2345699999999999999999998753 46788887553
Q ss_pred hhh----------cc--cc-------c-HHHHHHHHHHHHh-CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHH
Q 003525 559 LTM----------WF--GE-------S-EANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLT 617 (813)
Q Consensus 559 ~~~----------~v--g~-------s-e~~i~~vF~~a~~-~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~ 617 (813)
.+. .. |. + .+....+++.... ..+.||+|||+|.+... ...++.+|+.
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-----------~~~~L~~l~~ 154 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-----------DDDLLYQLSR 154 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-----------CcHHHHhHhc
Confidence 221 11 11 1 2234455555432 44679999999999621 1235556655
Q ss_pred HHhcc-CCCCcEEEEeccCCCC---CCCccccCCCCcc-cccccCCCCHHHHHHHHHHHhccC---CCCCcccHHHHHHH
Q 003525 618 EMDGM-NAKKTVFIIGATNRPD---IIDPALLRPGRLD-QLIYIPLPDEASRLQIFKACLRKS---PISPDVDLSALARY 689 (813)
Q Consensus 618 ~ld~~-~~~~~v~vi~aTn~~~---~ld~allr~gRf~-~~i~~~~p~~~~r~~Il~~~l~~~---~~~~~~d~~~la~~ 689 (813)
..+.. ....++.+|+++|.++ .+++.+.+ ||. ..|+|++++.++..+|++..++.. ..-.+.-++.+++.
T Consensus 155 ~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~ 232 (365)
T TIGR02928 155 ARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAAL 232 (365)
T ss_pred cccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHH
Confidence 42211 1235789999999886 47788876 775 679999999999999999988631 11111113333333
Q ss_pred ---cCCCCHHHHHHHHHHHHHHHHHH
Q 003525 690 ---THGFSGADITEVCQRACKYAIRE 712 (813)
Q Consensus 690 ---~~g~sg~di~~l~~~a~~~a~~~ 712 (813)
+.| ..+.+..+|+.|+..|..+
T Consensus 233 ~~~~~G-d~R~al~~l~~a~~~a~~~ 257 (365)
T TIGR02928 233 AAQEHG-DARKAIDLLRVAGEIAERE 257 (365)
T ss_pred HHHhcC-CHHHHHHHHHHHHHHHHHc
Confidence 333 3455566888888777654
No 135
>PRK04195 replication factor C large subunit; Provisional
Probab=99.46 E-value=5.3e-13 Score=153.37 Aligned_cols=191 Identities=25% Similarity=0.311 Sum_probs=133.1
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhhhcc
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 563 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~~~v 563 (813)
+.+++++.|.+++++.|..++..... | .+++++||+||||||||++|+++|++++..++.+++++..+
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~--- 77 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT--- 77 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc---
Confidence 45688999999999998877642110 1 23678999999999999999999999999999998876532
Q ss_pred cccHHHHHHHHHHHHh------CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCC
Q 003525 564 GESEANVREIFDKARQ------SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP 637 (813)
Q Consensus 564 g~se~~i~~vF~~a~~------~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~ 637 (813)
...++.+...+.. ..+.+|+|||+|.+.... ....++.|+..++. .+..+|+++|.+
T Consensus 78 ---~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----------d~~~~~aL~~~l~~----~~~~iIli~n~~ 140 (482)
T PRK04195 78 ---ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----------DRGGARAILELIKK----AKQPIILTANDP 140 (482)
T ss_pred ---HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----------chhHHHHHHHHHHc----CCCCEEEeccCc
Confidence 2233333333222 246799999999985420 12234666666662 233566778888
Q ss_pred CCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 003525 638 DIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGFSGADITEVCQRACKYA 709 (813)
Q Consensus 638 ~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~d~~~la~~~~g~sg~di~~l~~~a~~~a 709 (813)
..+.+..+| +....|.|++|+..++..+++..+...++.- +..+..|++.+. +|++.+++.....+
T Consensus 141 ~~~~~k~Lr--sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~----GDlR~ain~Lq~~a 207 (482)
T PRK04195 141 YDPSLRELR--NACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSG----GDLRSAINDLQAIA 207 (482)
T ss_pred cccchhhHh--ccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHHHHHh
Confidence 888774444 3335899999999999999999997766542 233677777554 48887777665543
No 136
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=1.5e-12 Score=147.99 Aligned_cols=189 Identities=19% Similarity=0.284 Sum_probs=139.4
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCe-------------
Q 003525 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 549 (813)
Q Consensus 483 ~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~------------- 549 (813)
..-+|+++.|++.+.+.|...+.. -+.+.++||+||+|||||++|+++|..+...
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 356789999999999988765432 1345679999999999999999999988542
Q ss_pred ---------------EEEEeccchhhhcccccHHHHHHHHHHHHhC----CCeEEEEecchhhhhccCCCCCCCCchHHH
Q 003525 550 ---------------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADR 610 (813)
Q Consensus 550 ---------------~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~ 610 (813)
++.+++.. ..+...++.+.+.+... ...|+||||+|.+. ..
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls--------------~~ 143 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS--------------KG 143 (507)
T ss_pred CChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC--------------HH
Confidence 11111110 12345677888777543 34699999999873 24
Q ss_pred HHHHHHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHH
Q 003525 611 VLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARY 689 (813)
Q Consensus 611 vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~ 689 (813)
.++.||..|+.. ...+++|++|+.++.+.+.+++ |+ .+++|.+++.++...+++..+++.++.-+ .-+..+++.
T Consensus 144 a~naLLk~LEep--p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~ 218 (507)
T PRK06645 144 AFNALLKTLEEP--PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYK 218 (507)
T ss_pred HHHHHHHHHhhc--CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 578888888853 4466777778888889999887 88 47899999999999999999987765533 236677877
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q 003525 690 THGFSGADITEVCQRACKYA 709 (813)
Q Consensus 690 ~~g~sg~di~~l~~~a~~~a 709 (813)
+.| +.+++.+++..+...+
T Consensus 219 s~G-slR~al~~Ldkai~~~ 237 (507)
T PRK06645 219 SEG-SARDAVSILDQAASMS 237 (507)
T ss_pred cCC-CHHHHHHHHHHHHHhh
Confidence 765 8888888888876554
No 137
>PRK06893 DNA replication initiation factor; Validated
Probab=99.45 E-value=9.5e-13 Score=136.35 Aligned_cols=160 Identities=12% Similarity=0.177 Sum_probs=103.2
Q ss_pred ceeeeecCCCCChhHHHHHHHHHh---CCeEEEEeccchhhhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCC
Q 003525 523 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 599 (813)
Q Consensus 523 ~gilL~GppGtGKT~la~ala~~~---~~~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~ 599 (813)
..++||||||||||+|++++|++. +....++...+. ......+++..+ ...+|+|||++.+.+.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~~~--~~dlLilDDi~~~~~~~-- 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFSPAVLENLE--QQDLVCLDDLQAVIGNE-- 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhhHHHHhhcc--cCCEEEEeChhhhcCCh--
Confidence 358999999999999999999886 233344433221 111123343433 34699999999985421
Q ss_pred CCCCCCchHHHHHHHHHHHHhccCCCC-cEEEEeccCCCCCCC---ccccCCCCcccccccCCCCHHHHHHHHHHHhccC
Q 003525 600 STGDAGGAADRVLNQLLTEMDGMNAKK-TVFIIGATNRPDIID---PALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS 675 (813)
Q Consensus 600 ~~~~~~~~~~~vl~~lL~~ld~~~~~~-~v~vi~aTn~~~~ld---~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~ 675 (813)
... ..|+..++.....+ .++|++++..|..++ +.+.++.++..++.+++||.++|.+|++..+...
T Consensus 108 -------~~~---~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~ 177 (229)
T PRK06893 108 -------EWE---LAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQR 177 (229)
T ss_pred -------HHH---HHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHc
Confidence 112 23444444443333 355666666776654 8888855667899999999999999999888655
Q ss_pred CCCCccc-HHHHHHHcCCCCHHHHHHHHHHH
Q 003525 676 PISPDVD-LSALARYTHGFSGADITEVCQRA 705 (813)
Q Consensus 676 ~~~~~~d-~~~la~~~~g~sg~di~~l~~~a 705 (813)
++.-+.+ +..|++...| +.+.+.+++...
T Consensus 178 ~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l 207 (229)
T PRK06893 178 GIELSDEVANFLLKRLDR-DMHTLFDALDLL 207 (229)
T ss_pred CCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 5443333 5677776553 666666666654
No 138
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.45 E-value=1.3e-12 Score=147.08 Aligned_cols=178 Identities=23% Similarity=0.324 Sum_probs=117.2
Q ss_pred CceeeeecCCCCChhHHHHHHHHHh-----CCeEEEEeccchhh----------hccc-------cc-HHHHHHHHHHHH
Q 003525 522 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLT----------MWFG-------ES-EANVREIFDKAR 578 (813)
Q Consensus 522 ~~gilL~GppGtGKT~la~ala~~~-----~~~~i~v~~~~l~~----------~~vg-------~s-e~~i~~vF~~a~ 578 (813)
+.+++|+||||||||++++.++..+ +..++++++....+ ...+ .+ ......+++...
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 134 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLD 134 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4569999999999999999999886 46688888764321 1112 11 222333444333
Q ss_pred h-CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCC---CCCccccCCCCcc-cc
Q 003525 579 Q-SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD---IIDPALLRPGRLD-QL 653 (813)
Q Consensus 579 ~-~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~---~ld~allr~gRf~-~~ 653 (813)
. ..+.||+|||+|.+.... ...++..|+..++.... .++.+|+++|.++ .+++.+.+ ||. ..
T Consensus 135 ~~~~~~viviDE~d~l~~~~----------~~~~l~~l~~~~~~~~~-~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~ 201 (394)
T PRK00411 135 ERDRVLIVALDDINYLFEKE----------GNDVLYSLLRAHEEYPG-ARIGVIGISSDLTFLYILDPRVKS--VFRPEE 201 (394)
T ss_pred hcCCEEEEEECCHhHhhccC----------CchHHHHHHHhhhccCC-CeEEEEEEECCcchhhhcCHHHHh--cCCcce
Confidence 2 346799999999997211 12467777777665532 3788889888764 46777765 663 57
Q ss_pred cccCCCCHHHHHHHHHHHhccC---CCCCcccHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHH
Q 003525 654 IYIPLPDEASRLQIFKACLRKS---PISPDVDLSALARYTHGFS--GADITEVCQRACKYAIRE 712 (813)
Q Consensus 654 i~~~~p~~~~r~~Il~~~l~~~---~~~~~~d~~~la~~~~g~s--g~di~~l~~~a~~~a~~~ 712 (813)
|+|++++.++..+|++..++.. ..-.+.-++.+++.+.+.+ .+.+..+|..|+..|..+
T Consensus 202 i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 202 IYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred eecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 8999999999999999888542 1112233566677664433 344557787777766553
No 139
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=1.7e-12 Score=148.53 Aligned_cols=187 Identities=20% Similarity=0.267 Sum_probs=134.8
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCe--------------
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 549 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~-------------- 549 (813)
.-+|++++|++.+++.|...+.. -..+..+||+||+|+|||++|+++|..+...
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQ------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 45789999999999999877643 1234568999999999999999999987542
Q ss_pred ----------EEEEeccchhhhcccccHHHHHHHHHHHH----hCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHH
Q 003525 550 ----------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 615 (813)
Q Consensus 550 ----------~i~v~~~~l~~~~vg~se~~i~~vF~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 615 (813)
++.+++.. ...-..++++.+.+. .....|+||||+|.+. ....+.|
T Consensus 80 ~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls--------------~~a~naL 139 (509)
T PRK14958 80 REIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS--------------GHSFNAL 139 (509)
T ss_pred HHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC--------------HHHHHHH
Confidence 34444331 122334666665543 2345799999999983 2357889
Q ss_pred HHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHcCCCC
Q 003525 616 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGFS 694 (813)
Q Consensus 616 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~~~g~s 694 (813)
|..|+..+ ..+.+|++|+.++.+.+.+++ |+ ..+.|.+++.++....++..+++.++.-+ ..+..+++...| +
T Consensus 140 Lk~LEepp--~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-s 213 (509)
T PRK14958 140 LKTLEEPP--SHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-S 213 (509)
T ss_pred HHHHhccC--CCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 99998653 456666777778878777876 88 47889999999988888888877665532 236677777654 7
Q ss_pred HHHHHHHHHHHHHH
Q 003525 695 GADITEVCQRACKY 708 (813)
Q Consensus 695 g~di~~l~~~a~~~ 708 (813)
.+++.+++..+...
T Consensus 214 lR~al~lLdq~ia~ 227 (509)
T PRK14958 214 VRDALSLLDQSIAY 227 (509)
T ss_pred HHHHHHHHHHHHhc
Confidence 78888888776543
No 140
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=2.5e-12 Score=144.93 Aligned_cols=188 Identities=20% Similarity=0.260 Sum_probs=138.7
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhC----------------
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---------------- 547 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~---------------- 547 (813)
..+|++++|++.+++.|...+.. + +.+.++||+||+|+||||+|+++|..+.
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~-----------~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTL-----------N-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 46799999999999988766442 1 3456799999999999999999998652
Q ss_pred --------CeEEEEeccchhhhcccccHHHHHHHHHHHHhC----CCeEEEEecchhhhhccCCCCCCCCchHHHHHHHH
Q 003525 548 --------ANFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 615 (813)
Q Consensus 548 --------~~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 615 (813)
..++.+++++- .+-..++.+.+.+... ...|++|||+|.+- ...++.|
T Consensus 77 ~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls--------------~~A~NaL 136 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS--------------NSAFNAL 136 (491)
T ss_pred HHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC--------------HHHHHHH
Confidence 23455554321 2235577777766543 35699999999873 2457889
Q ss_pred HHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHcCCCC
Q 003525 616 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGFS 694 (813)
Q Consensus 616 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~~~g~s 694 (813)
|..|+..+ ..+.+|++|+.++.|.+.+++ |+. .+.|.+++.++..+.++..+++.++.-+ ..+..|++.+.| +
T Consensus 137 LK~LEePp--~~v~fIlatte~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-s 210 (491)
T PRK14964 137 LKTLEEPA--PHVKFILATTEVKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-S 210 (491)
T ss_pred HHHHhCCC--CCeEEEEEeCChHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 99998643 456777777888888888887 884 7899999999999999999887765533 336677777654 7
Q ss_pred HHHHHHHHHHHHHHH
Q 003525 695 GADITEVCQRACKYA 709 (813)
Q Consensus 695 g~di~~l~~~a~~~a 709 (813)
.+++.+++..+..++
T Consensus 211 lR~alslLdqli~y~ 225 (491)
T PRK14964 211 MRNALFLLEQAAIYS 225 (491)
T ss_pred HHHHHHHHHHHHHhc
Confidence 888888887776543
No 141
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=2.8e-12 Score=147.76 Aligned_cols=187 Identities=20% Similarity=0.271 Sum_probs=136.7
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCe--------------
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 549 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~-------------- 549 (813)
..+|++|+|++.+++.|...+.. -+.+.++||+||+|||||++|+++|..+...
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sC 79 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSC 79 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHH
Confidence 46799999999999998877553 1345679999999999999999999986532
Q ss_pred ----------EEEEeccchhhhcccccHHHHHHHHHHHHh----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHH
Q 003525 550 ----------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 615 (813)
Q Consensus 550 ----------~i~v~~~~l~~~~vg~se~~i~~vF~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 615 (813)
++.+++.. +.....++++++.+.. ....|+||||+|.+- ...++.|
T Consensus 80 r~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls--------------~~A~NAL 139 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS--------------KSAFNAM 139 (709)
T ss_pred HHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC--------------HHHHHHH
Confidence 12222111 1223467777766532 334799999998862 3457889
Q ss_pred HHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHcCCCC
Q 003525 616 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARYTHGFS 694 (813)
Q Consensus 616 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-d~~~la~~~~g~s 694 (813)
|..|+.. ...+.+|++||.+..+.+.+++ |+ ..+.|++++.++...+++..+++.++.-+. -+..|++... -+
T Consensus 140 LKtLEEP--p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~-Gs 213 (709)
T PRK08691 140 LKTLEEP--PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAA-GS 213 (709)
T ss_pred HHHHHhC--CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC-CC
Confidence 9999854 3456777778888888888875 88 478889999999999999999877665332 3667777665 47
Q ss_pred HHHHHHHHHHHHHH
Q 003525 695 GADITEVCQRACKY 708 (813)
Q Consensus 695 g~di~~l~~~a~~~ 708 (813)
.+++.+++..+...
T Consensus 214 lRdAlnLLDqaia~ 227 (709)
T PRK08691 214 MRDALSLLDQAIAL 227 (709)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888776654
No 142
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=2.1e-12 Score=154.47 Aligned_cols=185 Identities=19% Similarity=0.236 Sum_probs=130.0
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCe--------------
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 549 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~-------------- 549 (813)
..+|++|+|++.+++.|...+.. -+....+||+||+|||||++|++||..+.+.
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDS------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 46899999999999988776542 1234558999999999999999999998531
Q ss_pred ------------EEEEeccchhhhcccccHHHHHHH----HHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHH
Q 003525 550 ------------FISVKGPELLTMWFGESEANVREI----FDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLN 613 (813)
Q Consensus 550 ------------~i~v~~~~l~~~~vg~se~~i~~v----F~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~ 613 (813)
++.+++... -.-..|+++ +.........|+||||+|.|- ....|
T Consensus 79 ~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt--------------~~a~N 138 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVT--------------PQGFN 138 (824)
T ss_pred HHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcC--------------HHHHH
Confidence 233332211 012234443 333334556799999999983 34578
Q ss_pred HHHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHcCC
Q 003525 614 QLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARYTHG 692 (813)
Q Consensus 614 ~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-d~~~la~~~~g 692 (813)
.||+.|+... ..+++|++|+.++.|-+.+.+ |+. ++.|..++.++..++|+..+++.++.-+. .+..+++...|
T Consensus 139 aLLK~LEEpP--~~~~fIl~tt~~~kLl~TIrS--Rc~-~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG 213 (824)
T PRK07764 139 ALLKIVEEPP--EHLKFIFATTEPDKVIGTIRS--RTH-HYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG 213 (824)
T ss_pred HHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--hee-EEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 8999998643 466777777888888888877 874 88999999999999999988776665332 24556666554
Q ss_pred CCHHHHHHHHHHHH
Q 003525 693 FSGADITEVCQRAC 706 (813)
Q Consensus 693 ~sg~di~~l~~~a~ 706 (813)
+-+++.+++....
T Consensus 214 -dlR~Al~eLEKLi 226 (824)
T PRK07764 214 -SVRDSLSVLDQLL 226 (824)
T ss_pred -CHHHHHHHHHHHH
Confidence 6666666666544
No 143
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.9e-12 Score=144.97 Aligned_cols=164 Identities=24% Similarity=0.365 Sum_probs=125.9
Q ss_pred ccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechh------hh--
Q 003525 215 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPE------IM-- 286 (813)
Q Consensus 215 ~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~------l~-- 286 (813)
+|--|+++.+++|.|++...... +-..|+-++|+||||+|||++++.||..++..|+.++-.- +-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 45689999999999998752221 2356788999999999999999999999999997776432 22
Q ss_pred -hhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccc-------------cCCcE
Q 003525 287 -SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK-------------SRAHV 352 (813)
Q Consensus 287 -~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-------------~~~~v 352 (813)
-.|+|....++-+.+.....+.| +++|||+|.+........ .++|+.+||.-+ .-.+|
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGDP-------asALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGDP-------ASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCCh-------HHHHHHhcChhhccchhhhccccccchhhe
Confidence 24677777777788888877777 888999999984322221 245666665432 22589
Q ss_pred EEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHh
Q 003525 353 IVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHT 396 (813)
Q Consensus 353 ivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~ 396 (813)
++|+|.|..+.|++.|+. |+ ..|+++=+..++...|.+.|+
T Consensus 556 LFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhh
Confidence 999999999999999987 76 458899899999999998765
No 144
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=4.2e-12 Score=147.37 Aligned_cols=187 Identities=24% Similarity=0.350 Sum_probs=137.1
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCC---------------
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 548 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~--------------- 548 (813)
+.+|+++.|++.+++.|...+.. -+.++.+||+||+|||||++|+.+|..+..
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 46799999999999988877553 123456899999999999999999988642
Q ss_pred ---------eEEEEeccchhhhcccccHHHHHHHHHHHHh----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHH
Q 003525 549 ---------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 615 (813)
Q Consensus 549 ---------~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 615 (813)
+++.+++.. +.+-..++++...+.. ....|++|||+|.+. ...++.|
T Consensus 80 ~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt--------------~~a~naL 139 (559)
T PRK05563 80 KAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS--------------TGAFNAL 139 (559)
T ss_pred HHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHHHHHH
Confidence 234443321 2334567777777553 335799999999873 2357888
Q ss_pred HHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHcCCCC
Q 003525 616 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGFS 694 (813)
Q Consensus 616 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~~~g~s 694 (813)
|..|+.. ...+++|++|+.++.|.+.+++ |+. .+.|++|+.++...+++..+++.++.-+ ..+..++....| +
T Consensus 140 LKtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~ 213 (559)
T PRK05563 140 LKTLEEP--PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-G 213 (559)
T ss_pred HHHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9988854 3456677777788999999887 885 6889999999999999999887765533 335667777665 7
Q ss_pred HHHHHHHHHHHHHH
Q 003525 695 GADITEVCQRACKY 708 (813)
Q Consensus 695 g~di~~l~~~a~~~ 708 (813)
.+++.+++..+...
T Consensus 214 ~R~al~~Ldq~~~~ 227 (559)
T PRK05563 214 MRDALSILDQAISF 227 (559)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777766544
No 145
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=4.3e-12 Score=146.42 Aligned_cols=187 Identities=21% Similarity=0.289 Sum_probs=131.6
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCC---------------
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 548 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~--------------- 548 (813)
..+|++|.|++.+++.|+..+.. + +.+..+||+||+|||||++|+++|..+..
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~-----------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDA-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 45799999999999998877553 1 23445899999999999999999988653
Q ss_pred -----------eEEEEeccchhhhcccccHHHHHHHHHHH----HhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHH
Q 003525 549 -----------NFISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLN 613 (813)
Q Consensus 549 -----------~~i~v~~~~l~~~~vg~se~~i~~vF~~a----~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~ 613 (813)
.++.+++... ..-..++++-+.+ ......|++|||+|.+- ....|
T Consensus 77 ~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt--------------~~A~N 136 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT--------------TAGFN 136 (584)
T ss_pred HHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC--------------HHHHH
Confidence 1233333211 0123344443333 23445799999999973 23678
Q ss_pred HHHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHcCC
Q 003525 614 QLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVD-LSALARYTHG 692 (813)
Q Consensus 614 ~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d-~~~la~~~~g 692 (813)
.||..|+.. ...+++|++|+.++.|.+.+++ |. .++.|.+++.++..+.++..+++.++.-+.+ +..+++.. +
T Consensus 137 ALLK~LEEp--p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s-~ 210 (584)
T PRK14952 137 ALLKIVEEP--PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAG-G 210 (584)
T ss_pred HHHHHHhcC--CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-C
Confidence 899999853 4577778888888888899887 76 4899999999999999999888776543333 44555544 4
Q ss_pred CCHHHHHHHHHHHHHH
Q 003525 693 FSGADITEVCQRACKY 708 (813)
Q Consensus 693 ~sg~di~~l~~~a~~~ 708 (813)
-+.+++.+++..+...
T Consensus 211 GdlR~aln~Ldql~~~ 226 (584)
T PRK14952 211 GSPRDTLSVLDQLLAG 226 (584)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 5777777777766543
No 146
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=3.1e-12 Score=146.89 Aligned_cols=184 Identities=18% Similarity=0.265 Sum_probs=126.8
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCe-------------
Q 003525 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 549 (813)
Q Consensus 483 ~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~------------- 549 (813)
...+|++|.|++.+++.|...+.. + +....+||+||+|||||++|+++|..+...
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~-----------~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~s 78 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQE-----------N-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQ 78 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHH
Confidence 356799999999999988876543 1 234579999999999999999999988542
Q ss_pred -----------EEEEeccchhhhcccccHHHHHHHHHH----HHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHH
Q 003525 550 -----------FISVKGPELLTMWFGESEANVREIFDK----ARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 614 (813)
Q Consensus 550 -----------~i~v~~~~l~~~~vg~se~~i~~vF~~----a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~ 614 (813)
++.+++..- ..-..++.+.+. .......|+||||+|.+- ...++.
T Consensus 79 C~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt--------------~~a~na 138 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT--------------REAFNA 138 (624)
T ss_pred HHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC--------------HHHHHH
Confidence 333433210 011233333222 223445799999999983 335688
Q ss_pred HHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHcCCC
Q 003525 615 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGF 693 (813)
Q Consensus 615 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~d~~~la~~~~g~ 693 (813)
||..|+.. ...+++|++||.++.+.+.+++ |+. +|.|++++.++...+|+..+.+.++.- +..+..+++.+.|
T Consensus 139 LLk~LEEP--~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G- 212 (624)
T PRK14959 139 LLKTLEEP--PARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG- 212 (624)
T ss_pred HHHHhhcc--CCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888853 3467788888888888888877 885 789999999999999998887766432 2336667776553
Q ss_pred CHHHHHHHHHH
Q 003525 694 SGADITEVCQR 704 (813)
Q Consensus 694 sg~di~~l~~~ 704 (813)
+.+++.+++..
T Consensus 213 dlR~Al~lLeq 223 (624)
T PRK14959 213 SVRDSMSLLGQ 223 (624)
T ss_pred CHHHHHHHHHH
Confidence 44444455443
No 147
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=4.1e-12 Score=147.01 Aligned_cols=187 Identities=18% Similarity=0.302 Sum_probs=133.3
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCe--------------
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 549 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~-------------- 549 (813)
..+|++++|++.+++.|...+... +.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 467899999999999888765531 234568999999999999999999887531
Q ss_pred ---------------EEEEeccchhhhcccccHHHHHHHHHHHHhC----CCeEEEEecchhhhhccCCCCCCCCchHHH
Q 003525 550 ---------------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADR 610 (813)
Q Consensus 550 ---------------~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~ 610 (813)
++.+++.. ...-..++++.+.+... ...|++|||+|.+. ..
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls--------------~~ 139 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT--------------NT 139 (618)
T ss_pred ccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC--------------HH
Confidence 22222211 11223566666665432 34699999999973 23
Q ss_pred HHHHHHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHH
Q 003525 611 VLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARY 689 (813)
Q Consensus 611 vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-d~~~la~~ 689 (813)
..|.||..|+.. ...+.+|++|+.++.+.+.+++ |+ .++.|.+++.++..+.++..+.+.++.-+. .+..|++.
T Consensus 140 a~NaLLKtLEEP--P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~ 214 (618)
T PRK14951 140 AFNAMLKTLEEP--PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARA 214 (618)
T ss_pred HHHHHHHhcccC--CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 478888888853 3456666677778778778887 87 589999999999999999988776665333 36777777
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q 003525 690 THGFSGADITEVCQRACKY 708 (813)
Q Consensus 690 ~~g~sg~di~~l~~~a~~~ 708 (813)
+.| +.+++.+++..+...
T Consensus 215 s~G-slR~al~lLdq~ia~ 232 (618)
T PRK14951 215 ARG-SMRDALSLTDQAIAF 232 (618)
T ss_pred cCC-CHHHHHHHHHHHHHh
Confidence 665 777777777655543
No 148
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=3e-12 Score=146.15 Aligned_cols=183 Identities=22% Similarity=0.349 Sum_probs=128.1
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCC---------------
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 548 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~--------------- 548 (813)
..+|+++.|++.+++.|...+.. -..+..+||+|||||||||+|+++|..+..
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~ 77 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQ------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL 77 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH
Confidence 56799999999999998877553 123445799999999999999999988742
Q ss_pred --------eEEEEeccchhhhcccccHHHHHHHHHHHHh----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHH
Q 003525 549 --------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLL 616 (813)
Q Consensus 549 --------~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL 616 (813)
.++.+++.+ ..+-..++.+.+.+.. ..+.|+||||+|.+. ...++.||
T Consensus 78 ~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls--------------~~a~naLL 137 (504)
T PRK14963 78 AVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS--------------KSAFNALL 137 (504)
T ss_pred HHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC--------------HHHHHHHH
Confidence 133343321 1123445665444432 345799999998752 34578888
Q ss_pred HHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHcCCCCH
Q 003525 617 TEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARYTHGFSG 695 (813)
Q Consensus 617 ~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-d~~~la~~~~g~sg 695 (813)
..|+.. ...+++|.+||.++.+.+.+.+ |+. ++.|++|+.++....++..+++.++.-+. .+..+++.+.| +.
T Consensus 138 k~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dl 211 (504)
T PRK14963 138 KTLEEP--PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AM 211 (504)
T ss_pred HHHHhC--CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 888854 3466777778888999999987 775 79999999999999999998877665322 24556655543 44
Q ss_pred HHHHHHHHH
Q 003525 696 ADITEVCQR 704 (813)
Q Consensus 696 ~di~~l~~~ 704 (813)
+++.++++.
T Consensus 212 R~aln~Lek 220 (504)
T PRK14963 212 RDAESLLER 220 (504)
T ss_pred HHHHHHHHH
Confidence 444444444
No 149
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.39 E-value=6.1e-12 Score=138.54 Aligned_cols=188 Identities=21% Similarity=0.323 Sum_probs=121.5
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhC-----CeEEEEeccch
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPEL 558 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~-----~~~i~v~~~~l 558 (813)
+.+|+++.|.+.+++.|...+.. + ...+++|+||||||||++|++++.++. .+++.+++.++
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~-----------~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDS-----------P--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF 77 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhC-----------C--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence 45688999999999888776542 1 123699999999999999999999874 34677777665
Q ss_pred hhhc-------------ccc-------cHHHHHHHHHHHHh-----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHH
Q 003525 559 LTMW-------------FGE-------SEANVREIFDKARQ-----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLN 613 (813)
Q Consensus 559 ~~~~-------------vg~-------se~~i~~vF~~a~~-----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~ 613 (813)
...+ .+. ....++.+.+.... ..+.++|+||+|.+.. ...+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~--------------~~~~ 143 (337)
T PRK12402 78 FDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE--------------DAQQ 143 (337)
T ss_pred hhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH--------------HHHH
Confidence 4221 111 01223333323222 2346999999998732 2345
Q ss_pred HHHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcCC
Q 003525 614 QLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHG 692 (813)
Q Consensus 614 ~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~d~~~la~~~~g 692 (813)
.|+..|+.... . ..+|.+|+.+..+.+.+.+ |+ ..+.|++|+.++...+++..+++.++. ++..+..|++.+
T Consensus 144 ~L~~~le~~~~-~-~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~-- 216 (337)
T PRK12402 144 ALRRIMEQYSR-T-CRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYA-- 216 (337)
T ss_pred HHHHHHHhccC-C-CeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--
Confidence 56666665433 2 3344455556666677776 76 478999999999999999988776654 233466777655
Q ss_pred CCHHHHHHHHHHHHH
Q 003525 693 FSGADITEVCQRACK 707 (813)
Q Consensus 693 ~sg~di~~l~~~a~~ 707 (813)
++|++.+++....
T Consensus 217 --~gdlr~l~~~l~~ 229 (337)
T PRK12402 217 --GGDLRKAILTLQT 229 (337)
T ss_pred --CCCHHHHHHHHHH
Confidence 3456655554443
No 150
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=1.1e-11 Score=141.81 Aligned_cols=186 Identities=20% Similarity=0.271 Sum_probs=132.1
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCC---------------
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 548 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~--------------- 548 (813)
+.+|+++.|++.+++.|...+.. -..+.++||+||+|+|||++|+++|..+.+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sC 79 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILN------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 46789999999999988776532 133467999999999999999999998642
Q ss_pred ---------eEEEEeccchhhhcccccHHHHHHHHHHHHhC----CCeEEEEecchhhhhccCCCCCCCCchHHHHHHHH
Q 003525 549 ---------NFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 615 (813)
Q Consensus 549 ---------~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 615 (813)
.++.+++... -.-..++.+.+.+... ...|++|||+|.+- ....+.|
T Consensus 80 r~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt--------------~~A~NaL 139 (605)
T PRK05896 80 ESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS--------------TSAWNAL 139 (605)
T ss_pred HHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC--------------HHHHHHH
Confidence 2233332210 1223466666655433 34699999999873 2246788
Q ss_pred HHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHcCCCC
Q 003525 616 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGFS 694 (813)
Q Consensus 616 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~d~~~la~~~~g~s 694 (813)
|..|+.. ...+++|++|+.++.|.+.+++ |+. ++.|++|+.++....++..+.+.++.- +..+..+++.+.| +
T Consensus 140 LKtLEEP--p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-d 213 (605)
T PRK05896 140 LKTLEEP--PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-S 213 (605)
T ss_pred HHHHHhC--CCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 8888854 3467777777888999999987 885 899999999999999998887665432 2336677776654 6
Q ss_pred HHHHHHHHHHHHH
Q 003525 695 GADITEVCQRACK 707 (813)
Q Consensus 695 g~di~~l~~~a~~ 707 (813)
.+++.+++..+..
T Consensus 214 lR~AlnlLekL~~ 226 (605)
T PRK05896 214 LRDGLSILDQLST 226 (605)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666444
No 151
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=6.7e-12 Score=144.65 Aligned_cols=187 Identities=24% Similarity=0.311 Sum_probs=133.1
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCe--------------
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 549 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~-------------- 549 (813)
..+|++|.|++.+++.|...+.. -+.+..+||+||+|+|||++|+++|..+...
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 45799999999999988876543 1234568999999999999999999987542
Q ss_pred ----------EEEEeccchhhhcccccHHHHHHHHHHHHh----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHH
Q 003525 550 ----------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 615 (813)
Q Consensus 550 ----------~i~v~~~~l~~~~vg~se~~i~~vF~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 615 (813)
++.+++.. .-.-..++++.+.+.. ....|+||||+|.+- ....|.|
T Consensus 80 ~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls--------------~~a~naL 139 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS--------------KSAFNAM 139 (527)
T ss_pred HHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC--------------HHHHHHH
Confidence 22222211 1123457777776643 234699999999873 3356889
Q ss_pred HHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHcCCCC
Q 003525 616 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARYTHGFS 694 (813)
Q Consensus 616 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-d~~~la~~~~g~s 694 (813)
|..|+.. ...+++|++|+.++.+.+.+++ |+ ..+.|.+++.++..+.++..+++.++..+. .+..+++.+. -+
T Consensus 140 LK~LEep--p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~-Gs 213 (527)
T PRK14969 140 LKTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAA-GS 213 (527)
T ss_pred HHHHhCC--CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CC
Confidence 9999864 3466677777777777777776 87 589999999999999998888766654332 3566676655 47
Q ss_pred HHHHHHHHHHHHHH
Q 003525 695 GADITEVCQRACKY 708 (813)
Q Consensus 695 g~di~~l~~~a~~~ 708 (813)
.+++.+++..|...
T Consensus 214 lr~al~lldqai~~ 227 (527)
T PRK14969 214 MRDALSLLDQAIAY 227 (527)
T ss_pred HHHHHHHHHHHHHh
Confidence 77888888776544
No 152
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=4e-12 Score=143.41 Aligned_cols=164 Identities=24% Similarity=0.351 Sum_probs=127.0
Q ss_pred ccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEech------hhh--
Q 003525 215 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGP------EIM-- 286 (813)
Q Consensus 215 ~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~------~l~-- 286 (813)
.|--|+++.+++|.+++...... .-..+.-++|+||||+|||+|++.||..++..|+.++.. ++.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 45689999999999998752222 123456799999999999999999999999999888753 332
Q ss_pred -hhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhcccc-------------CCcE
Q 003525 287 -SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKS-------------RAHV 352 (813)
Q Consensus 287 -~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~-------------~~~v 352 (813)
..|.|....++-+-+..+....| +++|||||.+..+-..... ++|+..+|.-+. -..|
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPa-------SALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPA-------SALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChH-------HHHHhhcCHhhcCchhhccccCccchhhe
Confidence 25777777788778888877777 8889999999876433222 455666653221 2579
Q ss_pred EEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHh
Q 003525 353 IVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHT 396 (813)
Q Consensus 353 ivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~ 396 (813)
++|+|.|..+.|+..|+. |+ ..|++.-+++.+..+|.+.|+
T Consensus 468 mFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhc
Confidence 999999999999999987 76 568999999999999999774
No 153
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.38 E-value=7e-12 Score=136.87 Aligned_cols=175 Identities=20% Similarity=0.325 Sum_probs=135.1
Q ss_pred CceeeeecCCCCChhHHHHHHHHHh-----CCeEEEEeccchhhhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhc
Q 003525 522 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 596 (813)
Q Consensus 522 ~~gilL~GppGtGKT~la~ala~~~-----~~~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~ 596 (813)
...++||||.|+|||+|++|++++. +..++++...++...++-....+-.+-|++-+ .-.+++||+|+.+.++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 4459999999999999999999886 24578888888888777665555566788777 4469999999999653
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCC---CccccCCCCcc--cccccCCCCHHHHHHHHHHH
Q 003525 597 RGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII---DPALLRPGRLD--QLIYIPLPDEASRLQIFKAC 671 (813)
Q Consensus 597 r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l---d~allr~gRf~--~~i~~~~p~~~~r~~Il~~~ 671 (813)
++...+|...+..+...++.+|+.+...|..+ +|.|.+ ||. .++.+.+||.+.|.+|++..
T Consensus 191 ------------~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kk 256 (408)
T COG0593 191 ------------ERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKK 256 (408)
T ss_pred ------------hhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHH
Confidence 34467777777777777778888888888765 477877 775 77889999999999999998
Q ss_pred hccCCCCCccc-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Q 003525 672 LRKSPISPDVD-LSALARYTHGFSGADITEVCQRACKYAIREN 713 (813)
Q Consensus 672 l~~~~~~~~~d-~~~la~~~~g~sg~di~~l~~~a~~~a~~~~ 713 (813)
.+..++.-..+ +..+|.... -+.+++..++......|....
T Consensus 257 a~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~~ 298 (408)
T COG0593 257 AEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALFTK 298 (408)
T ss_pred HHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhcC
Confidence 87766654444 455666544 578899988888877776654
No 154
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.37 E-value=1.2e-11 Score=137.15 Aligned_cols=188 Identities=23% Similarity=0.365 Sum_probs=134.1
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCC--------------
Q 003525 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------------- 548 (813)
Q Consensus 483 ~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~-------------- 548 (813)
...+|+++.|++.+++.|.+.+.. + ..+..+|||||||+|||++|+++|..+..
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 457899999999999988876542 1 23456899999999999999999988642
Q ss_pred ----------eEEEEeccchhhhcccccHHHHHHHHHHHHhC----CCeEEEEecchhhhhccCCCCCCCCchHHHHHHH
Q 003525 549 ----------NFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 614 (813)
Q Consensus 549 ----------~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~ 614 (813)
+++.+++.+ ......++.+++.+... ...|++|||+|.+. ....+.
T Consensus 77 c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~--------------~~~~~~ 136 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS--------------KSAFNA 136 (355)
T ss_pred HHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC--------------HHHHHH
Confidence 233333321 12334577787776543 23599999998873 235678
Q ss_pred HHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHcCCC
Q 003525 615 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGF 693 (813)
Q Consensus 615 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~~~g~ 693 (813)
||..++.. ...+++|++||.++.+.+++.+ |+. .+.|++|+.++..++++..+++.++.-+ ..+..+++...|
T Consensus 137 Ll~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g- 210 (355)
T TIGR02397 137 LLKTLEEP--PEHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG- 210 (355)
T ss_pred HHHHHhCC--ccceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888754 3466777778888888888887 874 7899999999999999999887765422 335666776654
Q ss_pred CHHHHHHHHHHHHHH
Q 003525 694 SGADITEVCQRACKY 708 (813)
Q Consensus 694 sg~di~~l~~~a~~~ 708 (813)
+.+.+.+.+..+...
T Consensus 211 ~~~~a~~~lekl~~~ 225 (355)
T TIGR02397 211 SLRDALSLLDQLISF 225 (355)
T ss_pred ChHHHHHHHHHHHhh
Confidence 666666666665543
No 155
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.37 E-value=6.8e-12 Score=142.00 Aligned_cols=173 Identities=17% Similarity=0.270 Sum_probs=119.8
Q ss_pred ceeeeecCCCCChhHHHHHHHHHh-----CCeEEEEeccchhhhcccccHH---HHHHHHHHHHhCCCeEEEEecchhhh
Q 003525 523 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEA---NVREIFDKARQSAPCVLFFDELDSIA 594 (813)
Q Consensus 523 ~gilL~GppGtGKT~la~ala~~~-----~~~~i~v~~~~l~~~~vg~se~---~i~~vF~~a~~~~p~il~iDEid~l~ 594 (813)
.+++|||++|+|||+|++++++++ +..++++++.++...+...... .+....+..+ ...+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~--~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEIC--QNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhc--cCCEEEEecccccc
Confidence 469999999999999999999965 3567889998887766543222 2222222222 34699999999885
Q ss_pred hccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCC---CCccccCCCCc--ccccccCCCCHHHHHHHHH
Q 003525 595 TQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDI---IDPALLRPGRL--DQLIYIPLPDEASRLQIFK 669 (813)
Q Consensus 595 ~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~---ld~allr~gRf--~~~i~~~~p~~~~r~~Il~ 669 (813)
.+ ......|...++.....++.+||.+...|+. +++.|.+ || ..++.+.+|+.++|.+|++
T Consensus 220 ~k------------~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 220 YK------------EKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred CC------------HHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHH
Confidence 32 2344555555655544555566665555654 5678887 77 4788899999999999999
Q ss_pred HHhccCCCC---CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 003525 670 ACLRKSPIS---PDVDLSALARYTHGFSGADITEVCQRACKYAIRE 712 (813)
Q Consensus 670 ~~l~~~~~~---~~~d~~~la~~~~g~sg~di~~l~~~a~~~a~~~ 712 (813)
..++..++. ++.-++.|+....| +.+.+.++|..+...+...
T Consensus 286 ~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~ 330 (450)
T PRK14087 286 KEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQN 330 (450)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcc
Confidence 999775531 12225666766654 7889999998887665543
No 156
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.37 E-value=3.2e-11 Score=141.57 Aligned_cols=223 Identities=24% Similarity=0.367 Sum_probs=136.7
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHh----------CCeEEEE
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 553 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~----------~~~~i~v 553 (813)
.-+|+++.|++...+.+...+.. ..+.+++|+|||||||||+|+++++.. +.+|+.+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 45788899998887766544321 224469999999999999999998776 3468999
Q ss_pred eccchh-------hhcccccHHH----HHHHHHH----------HHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHH
Q 003525 554 KGPELL-------TMWFGESEAN----VREIFDK----------ARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVL 612 (813)
Q Consensus 554 ~~~~l~-------~~~vg~se~~----i~~vF~~----------a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl 612 (813)
++..+- ..++|..... .+..+.. .......+|||||++.+-. ...
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~--------------~~Q 282 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP--------------LLQ 282 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH--------------HHH
Confidence 887642 1222221111 1111110 0112235999999988732 234
Q ss_pred HHHHHHHhccC--------------------------CCCcEEEEe-ccCCCCCCCccccCCCCcccccccCCCCHHHHH
Q 003525 613 NQLLTEMDGMN--------------------------AKKTVFIIG-ATNRPDIIDPALLRPGRLDQLIYIPLPDEASRL 665 (813)
Q Consensus 613 ~~lL~~ld~~~--------------------------~~~~v~vi~-aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~ 665 (813)
..|+..|+.-. ....+++|+ ||+.++.++++|.+ ||. .++|++++.+++.
T Consensus 283 ~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~ 359 (615)
T TIGR02903 283 NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHH
Confidence 55555554210 112355555 55668889999887 997 6789999999999
Q ss_pred HHHHHHhccCCCCCccc-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCcccccccccccccccH
Q 003525 666 QIFKACLRKSPISPDVD-LSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERERRKMENPEAMEEDEVDDVDEIKA 744 (813)
Q Consensus 666 ~Il~~~l~~~~~~~~~d-~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 744 (813)
.|++..+.+.++.-+.+ +..|++.+ +.|+...+++..+...+..+..... .......|+.
T Consensus 360 ~Il~~~a~~~~v~ls~eal~~L~~ys--~~gRraln~L~~~~~~~~~~~~~~~-----------------~~~~~~~I~~ 420 (615)
T TIGR02903 360 LIVLNAAEKINVHLAAGVEELIARYT--IEGRKAVNILADVYGYALYRAAEAG-----------------KENDKVTITQ 420 (615)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHCC--CcHHHHHHHHHHHHHHHHHHHHHhc-----------------cCCCCeeECH
Confidence 99999998765432222 34445543 2566655666666554444321000 0011247999
Q ss_pred HHHHHHHhhcc
Q 003525 745 VHFEESMKYAR 755 (813)
Q Consensus 745 ~~f~~a~~~~~ 755 (813)
+|++++++.-+
T Consensus 421 edv~~~l~~~r 431 (615)
T TIGR02903 421 DDVYEVIQISR 431 (615)
T ss_pred HHHHHHhCCCc
Confidence 99999997643
No 157
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=6.7e-12 Score=143.51 Aligned_cols=185 Identities=22% Similarity=0.257 Sum_probs=127.7
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCC---------------
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 548 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~--------------- 548 (813)
..+|+++.|++.+++.|...+... +.+..+||+||+|+|||++|+++|..+..
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 467899999999998887765431 23456899999999999999999997753
Q ss_pred ---------eEEEEeccchhhhcccccHHHHHHHHHHHHh----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHH
Q 003525 549 ---------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 615 (813)
Q Consensus 549 ---------~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 615 (813)
.++.+++..- . .-..++.+.+.+.. ....|+||||+|.+- ....+.|
T Consensus 80 ~~i~~~~~~dlieidaas~----~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls--------------~~a~naL 139 (546)
T PRK14957 80 VAINNNSFIDLIEIDAASR----T--GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS--------------KQSFNAL 139 (546)
T ss_pred HHHhcCCCCceEEeecccc----c--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc--------------HHHHHHH
Confidence 2333332111 1 12244555554432 345799999999873 3467889
Q ss_pred HHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHcCCCC
Q 003525 616 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARYTHGFS 694 (813)
Q Consensus 616 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-d~~~la~~~~g~s 694 (813)
|..|+.. .+.+++|++|+.+..+-+.+++ |+ ..++|.+++.++....++..+++.++..+. .+..+++.+. -+
T Consensus 140 LK~LEep--p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~-Gd 213 (546)
T PRK14957 140 LKTLEEP--PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAK-GS 213 (546)
T ss_pred HHHHhcC--CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CC
Confidence 9999854 3455566666667777777776 88 589999999999999999888776654332 3456666654 46
Q ss_pred HHHHHHHHHHHH
Q 003525 695 GADITEVCQRAC 706 (813)
Q Consensus 695 g~di~~l~~~a~ 706 (813)
.+++.+++..+.
T Consensus 214 lR~alnlLek~i 225 (546)
T PRK14957 214 LRDALSLLDQAI 225 (546)
T ss_pred HHHHHHHHHHHH
Confidence 666666666544
No 158
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.37 E-value=7.5e-12 Score=129.66 Aligned_cols=166 Identities=15% Similarity=0.209 Sum_probs=109.6
Q ss_pred CCceeeeecCCCCChhHHHHHHHHHh---CCeEEEEeccchhhhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhcc
Q 003525 521 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 597 (813)
Q Consensus 521 ~~~gilL~GppGtGKT~la~ala~~~---~~~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r 597 (813)
.+.+++|+||+|||||++|++++..+ +.+++.+++.++.... ..++..... ..+|+|||++.+...
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~--~~lLvIDdi~~l~~~- 105 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGLEQ--ADLVCLDDVEAIAGQ- 105 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhccc--CCEEEEeChhhhcCC-
Confidence 34579999999999999999999886 3578888887775432 233333322 359999999997431
Q ss_pred CCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCCC---ccccCCCCc--ccccccCCCCHHHHHHHHHHHh
Q 003525 598 GSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIID---PALLRPGRL--DQLIYIPLPDEASRLQIFKACL 672 (813)
Q Consensus 598 ~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld---~allr~gRf--~~~i~~~~p~~~~r~~Il~~~l 672 (813)
......|...++.....+..+|+.++..+..++ +.+.+ |+ ...|.+|+|+.+++..+++..+
T Consensus 106 -----------~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~ 172 (226)
T TIGR03420 106 -----------PEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRA 172 (226)
T ss_pred -----------hHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHH
Confidence 011233333333332233345555554554433 66776 65 4789999999999999999887
Q ss_pred ccCCCCCcc-cHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 003525 673 RKSPISPDV-DLSALARYTHGFSGADITEVCQRACKYAIR 711 (813)
Q Consensus 673 ~~~~~~~~~-d~~~la~~~~g~sg~di~~l~~~a~~~a~~ 711 (813)
.+.++.-+. -+..|++. .+-+.+++.++++.+...+..
T Consensus 173 ~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~ 211 (226)
T TIGR03420 173 ARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLA 211 (226)
T ss_pred HHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHH
Confidence 665543222 25667774 556889999999887655444
No 159
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=1.9e-11 Score=142.54 Aligned_cols=193 Identities=23% Similarity=0.327 Sum_probs=135.0
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEE---------
Q 003525 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISV--------- 553 (813)
Q Consensus 483 ~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v--------- 553 (813)
.+.+|++|.|++.+++.|...+... +.+..+||+||+|+|||++|+++|..+.+.--..
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 4568999999999999888776531 2345689999999999999999998875421000
Q ss_pred ----eccchhh--hcccccHHHHHHHHHHHHh----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccC
Q 003525 554 ----KGPELLT--MWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN 623 (813)
Q Consensus 554 ----~~~~l~~--~~vg~se~~i~~vF~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~ 623 (813)
...+++. .....+...++.+.+.+.. ....|++|||+|.+- ...++.||..|+..
T Consensus 81 ~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT--------------~~A~NALLKtLEEP- 145 (725)
T PRK07133 81 ENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS--------------KSAFNALLKTLEEP- 145 (725)
T ss_pred HhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC--------------HHHHHHHHHHhhcC-
Confidence 0001100 0000123457777777654 345799999999873 23578899999854
Q ss_pred CCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHcCCCCHHHHHHHH
Q 003525 624 AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVD-LSALARYTHGFSGADITEVC 702 (813)
Q Consensus 624 ~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d-~~~la~~~~g~sg~di~~l~ 702 (813)
...+++|++|+.++.|.+.+++ |+. ++.|.+|+.++...+++..+.+.++.-+.+ +..+|..+.| +.+++..++
T Consensus 146 -P~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslL 220 (725)
T PRK07133 146 -PKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIA 220 (725)
T ss_pred -CCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 4467777778888999999887 885 899999999999999998887766553332 5667766654 666666666
Q ss_pred HHHHH
Q 003525 703 QRACK 707 (813)
Q Consensus 703 ~~a~~ 707 (813)
..+..
T Consensus 221 ekl~~ 225 (725)
T PRK07133 221 EQVSI 225 (725)
T ss_pred HHHHH
Confidence 65543
No 160
>PLN03025 replication factor C subunit; Provisional
Probab=99.36 E-value=1.1e-11 Score=135.03 Aligned_cols=180 Identities=18% Similarity=0.217 Sum_probs=120.6
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhC-----CeEEEEeccch
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPEL 558 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~-----~~~i~v~~~~l 558 (813)
+.+++++.|.+++.+.|+..+.. ....+++|+||||||||++|+++|+++. ..++.++.++.
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~ 75 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD 75 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc
Confidence 45788999999988888765432 1123599999999999999999999872 23566666543
Q ss_pred hhhcccccHHHHHHHHHH---HH----hCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEE
Q 003525 559 LTMWFGESEANVREIFDK---AR----QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFII 631 (813)
Q Consensus 559 ~~~~vg~se~~i~~vF~~---a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi 631 (813)
.+ -..++...+. .. ...+.|++|||+|.+.. ...+.|+..|+.... ...+|
T Consensus 76 ~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~--------------~aq~aL~~~lE~~~~--~t~~i 133 (319)
T PLN03025 76 RG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS--------------GAQQALRRTMEIYSN--TTRFA 133 (319)
T ss_pred cc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH--------------HHHHHHHHHHhcccC--CceEE
Confidence 22 1123332221 11 12357999999999842 234666777764432 34466
Q ss_pred eccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHcCCCCHHHHHHHHHHH
Q 003525 632 GATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGFSGADITEVCQRA 705 (813)
Q Consensus 632 ~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~d~~~la~~~~g~sg~di~~l~~~a 705 (813)
.+||.++.+.+++.+ |+ ..+.|++|+.++....++..+++.++.- +..+..+++...| |++.+++..
T Consensus 134 l~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g----DlR~aln~L 201 (319)
T PLN03025 134 LACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG----DMRQALNNL 201 (319)
T ss_pred EEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHH
Confidence 677888888888887 77 4899999999999999999887765542 2336667765543 555554443
No 161
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.35 E-value=2e-11 Score=141.00 Aligned_cols=167 Identities=22% Similarity=0.339 Sum_probs=108.9
Q ss_pred eeeecCCCCChhHHHHHHHHHhC----------CeEEEEeccchhhhc----------c------c-ccHHHHHHHHHHH
Q 003525 525 VLFYGPPGCGKTLLAKAIANECQ----------ANFISVKGPELLTMW----------F------G-ESEANVREIFDKA 577 (813)
Q Consensus 525 ilL~GppGtGKT~la~ala~~~~----------~~~i~v~~~~l~~~~----------v------g-~se~~i~~vF~~a 577 (813)
++|+|+||||||++++.+..++. ..+++|+|..+...+ . | .+...+..+|...
T Consensus 784 LYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L 863 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQN 863 (1164)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhh
Confidence 56999999999999999987762 457889885543221 0 1 1234556677655
Q ss_pred Hh--CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCC---CCCCCccccCCCCccc
Q 003525 578 RQ--SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR---PDIIDPALLRPGRLDQ 652 (813)
Q Consensus 578 ~~--~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~---~~~ld~allr~gRf~~ 652 (813)
.. ....||+|||||.|... ...++-.|+.... ....+++|||++|. ++.|+|.+.+ ||..
T Consensus 864 ~k~~r~v~IIILDEID~L~kK-----------~QDVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~ 928 (1164)
T PTZ00112 864 KKDNRNVSILIIDEIDYLITK-----------TQKVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAF 928 (1164)
T ss_pred hcccccceEEEeehHhhhCcc-----------HHHHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhh--cccc
Confidence 22 33579999999999642 1344444444332 23457999999986 5567888876 6653
Q ss_pred -ccccCCCCHHHHHHHHHHHhccCC-CCCcccHHHHHHHcCCCCHHHHH---HHHHHHHH
Q 003525 653 -LIYIPLPDEASRLQIFKACLRKSP-ISPDVDLSALARYTHGFSGADIT---EVCQRACK 707 (813)
Q Consensus 653 -~i~~~~p~~~~r~~Il~~~l~~~~-~~~~~d~~~la~~~~g~sg~di~---~l~~~a~~ 707 (813)
.|.|++|+.+++.+||+..+.... +-.+.-++.+|+.....+ +|++ .+|+.|+.
T Consensus 929 eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~S-GDARKALDILRrAgE 987 (1164)
T PTZ00112 929 GRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVS-GDIRKALQICRKAFE 987 (1164)
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcC-CHHHHHHHHHHHHHh
Confidence 478899999999999999987642 222222566666444333 3444 45555553
No 162
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=1.5e-11 Score=143.44 Aligned_cols=187 Identities=21% Similarity=0.310 Sum_probs=134.6
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCe--------------
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 549 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~-------------- 549 (813)
..+|++|+|++++++.|...+.. + +.+..+|||||+|+|||++|+++|..+...
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDT-----------G-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 46899999999999998876542 1 345568999999999999999999987531
Q ss_pred ----------EEEEeccchhhhcccccHHHHHHHHHHHHhC----CCeEEEEecchhhhhccCCCCCCCCchHHHHHHHH
Q 003525 550 ----------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 615 (813)
Q Consensus 550 ----------~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 615 (813)
++.+++..- ..-..++++.+.+... ...|++|||+|.+- ....|.|
T Consensus 80 ~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt--------------~~a~naL 139 (576)
T PRK14965 80 VEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS--------------TNAFNAL 139 (576)
T ss_pred HHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCC--------------HHHHHHH
Confidence 333333221 1234567776665432 34699999999873 2356889
Q ss_pred HHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHcCCCC
Q 003525 616 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGFS 694 (813)
Q Consensus 616 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~d~~~la~~~~g~s 694 (813)
|..|+.. ...+++|++||.++.|.+.+++ |+. ++.|.+++.++....++..+++.++.- +..+..+++.+.| +
T Consensus 140 Lk~LEep--p~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~ 213 (576)
T PRK14965 140 LKTLEEP--PPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-S 213 (576)
T ss_pred HHHHHcC--CCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-C
Confidence 9999854 4467777888888999999887 874 899999999999999988887766543 2335667776664 5
Q ss_pred HHHHHHHHHHHHHH
Q 003525 695 GADITEVCQRACKY 708 (813)
Q Consensus 695 g~di~~l~~~a~~~ 708 (813)
-+++.+++..+..+
T Consensus 214 lr~al~~Ldqliay 227 (576)
T PRK14965 214 MRDSLSTLDQVLAF 227 (576)
T ss_pred HHHHHHHHHHHHHh
Confidence 56666666554433
No 163
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.35 E-value=1.6e-11 Score=124.30 Aligned_cols=192 Identities=25% Similarity=0.395 Sum_probs=133.3
Q ss_pred cCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHh---CCeEEEEeccch
Q 003525 482 VPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPEL 558 (813)
Q Consensus 482 ~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~---~~~~i~v~~~~l 558 (813)
...+.++++.|++..|+.|.+.....+ . | .+..++||+|+.|||||+++|++..+. +..+|.|...++
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl-------~-G-~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFL-------Q-G-LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHH-------c-C-CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 457899999999999999877644322 1 2 356779999999999999999999887 455677776655
Q ss_pred hhhcccccHHHHHHHHHHHHhC-CCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccC--CCCcEEEEeccC
Q 003525 559 LTMWFGESEANVREIFDKARQS-APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN--AKKTVFIIGATN 635 (813)
Q Consensus 559 ~~~~vg~se~~i~~vF~~a~~~-~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~--~~~~v~vi~aTn 635 (813)
. .+-.+++..+.. ..-|||+|++..= . . +.-...|-..|||.- ..++|+|.+|+|
T Consensus 92 ~---------~l~~l~~~l~~~~~kFIlf~DDLsFe---------~-~---d~~yk~LKs~LeGgle~~P~NvliyATSN 149 (249)
T PF05673_consen 92 G---------DLPELLDLLRDRPYKFILFCDDLSFE---------E-G---DTEYKALKSVLEGGLEARPDNVLIYATSN 149 (249)
T ss_pred c---------cHHHHHHHHhcCCCCEEEEecCCCCC---------C-C---cHHHHHHHHHhcCccccCCCcEEEEEecc
Confidence 3 234455554432 3469999996531 0 1 223466666788763 467999999999
Q ss_pred CCCCCCcc----------ccCC-----------CCcccccccCCCCHHHHHHHHHHHhccCCCCCc-ccHHH----HHHH
Q 003525 636 RPDIIDPA----------LLRP-----------GRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSA----LARY 689 (813)
Q Consensus 636 ~~~~ld~a----------llr~-----------gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~----la~~ 689 (813)
|..++.+- -+.| .||..+|.|.+||.++-.+|.+.++++.++..+ .++.. .|..
T Consensus 150 RRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~ 229 (249)
T PF05673_consen 150 RRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALR 229 (249)
T ss_pred hhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 86543221 1122 399999999999999999999999988877654 22322 2334
Q ss_pred cCCCCHHHHHHHHHH
Q 003525 690 THGFSGADITEVCQR 704 (813)
Q Consensus 690 ~~g~sg~di~~l~~~ 704 (813)
..|.||+--.+.|..
T Consensus 230 rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 230 RGGRSGRTARQFIDD 244 (249)
T ss_pred cCCCCHHHHHHHHHH
Confidence 567888766665543
No 164
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.35 E-value=1.5e-11 Score=127.86 Aligned_cols=159 Identities=16% Similarity=0.136 Sum_probs=101.5
Q ss_pred ceeeeecCCCCChhHHHHHHHHHhC---CeEEEEeccchhhhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCC
Q 003525 523 KGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 599 (813)
Q Consensus 523 ~gilL~GppGtGKT~la~ala~~~~---~~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~ 599 (813)
..++||||+|||||+|++++++... ....++...+... ...++++.... ..+++|||++.+...
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~--- 112 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGD--- 112 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHhhh--CCEEEEeChhhhcCC---
Confidence 4699999999999999999998764 2344444433211 11222222222 259999999998532
Q ss_pred CCCCCCchHHHHHHHHHHHHhccCCCCc-EEEEeccCCCCC---CCccccCCCCcc--cccccCCCCHHHHHHHHHHHhc
Q 003525 600 STGDAGGAADRVLNQLLTEMDGMNAKKT-VFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEASRLQIFKACLR 673 (813)
Q Consensus 600 ~~~~~~~~~~~vl~~lL~~ld~~~~~~~-v~vi~aTn~~~~---ld~allr~gRf~--~~i~~~~p~~~~r~~Il~~~l~ 673 (813)
.... ..|...++.....++ .+++++++.|.. +.|.|.+ |+. .++.+.+|+.+++.+|++....
T Consensus 113 ------~~~~---~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~ 181 (235)
T PRK08084 113 ------ELWE---MAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRAR 181 (235)
T ss_pred ------HHHH---HHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHH
Confidence 1112 223333333222333 466666666655 5788987 775 8999999999999999998776
Q ss_pred cCCCCCccc-HHHHHHHcCCCCHHHHHHHHHHHH
Q 003525 674 KSPISPDVD-LSALARYTHGFSGADITEVCQRAC 706 (813)
Q Consensus 674 ~~~~~~~~d-~~~la~~~~g~sg~di~~l~~~a~ 706 (813)
..++.-+.+ ++.|++...| +.+.+.+++....
T Consensus 182 ~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~ 214 (235)
T PRK08084 182 LRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLD 214 (235)
T ss_pred HcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence 554443222 6777776654 7777777777643
No 165
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=3.1e-11 Score=136.65 Aligned_cols=184 Identities=21% Similarity=0.294 Sum_probs=127.7
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCC---------------
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 548 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~--------------- 548 (813)
..+|++|+|++.++..|...+.. -..+..+|||||+|+|||++|+++|..+..
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRF------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 46899999999999988776543 123456999999999999999999988642
Q ss_pred ----------eEEEEeccchhhhcccccHHHHHHHHHHH----HhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHH
Q 003525 549 ----------NFISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 614 (813)
Q Consensus 549 ----------~~i~v~~~~l~~~~vg~se~~i~~vF~~a----~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~ 614 (813)
+++.+++... . .-..++.+-+.. ......|+||||+|.+. ....+.
T Consensus 81 C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt--------------~~~~n~ 140 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT--------------KEAFNS 140 (451)
T ss_pred HHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC--------------HHHHHH
Confidence 2334443221 1 112333332222 23456899999999873 234688
Q ss_pred HHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHcCCC
Q 003525 615 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGF 693 (813)
Q Consensus 615 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~~~g~ 693 (813)
|+..|+.. ...+++|++||.++.|-+++.+ |+. .++|++++.++....++..+++.++.-+ ..+..|+..+.|
T Consensus 141 LLk~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g- 214 (451)
T PRK06305 141 LLKTLEEP--PQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG- 214 (451)
T ss_pred HHHHhhcC--CCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 89998864 3466777777888888899887 885 7899999999999999988877665432 346677776654
Q ss_pred CHHHHHHHHHHH
Q 003525 694 SGADITEVCQRA 705 (813)
Q Consensus 694 sg~di~~l~~~a 705 (813)
+-+++.+.+..+
T Consensus 215 dlr~a~~~Lekl 226 (451)
T PRK06305 215 SLRDAESLYDYV 226 (451)
T ss_pred CHHHHHHHHHHH
Confidence 444554444443
No 166
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.35 E-value=3.9e-11 Score=123.12 Aligned_cols=185 Identities=20% Similarity=0.253 Sum_probs=127.6
Q ss_pred cCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCe------EEEEec
Q 003525 482 VPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------FISVKG 555 (813)
Q Consensus 482 ~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~------~i~v~~ 555 (813)
....+++++.|++.+++.|...+.. ....++|||||||||||+.|+++|.++..+ ....+.
T Consensus 30 YrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lna 96 (346)
T KOG0989|consen 30 YRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNA 96 (346)
T ss_pred hCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcc
Confidence 3456789999999999999876543 233469999999999999999999998652 233344
Q ss_pred cchhhhcccccHHHHHHHHHHHHhC---------C-CeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCC
Q 003525 556 PELLTMWFGESEANVREIFDKARQS---------A-PCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAK 625 (813)
Q Consensus 556 ~~l~~~~vg~se~~i~~vF~~a~~~---------~-p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~ 625 (813)
++-.+.-++. .+ .+-|.+.... + +.|++|||.|++. ....+.|...|+.. .
T Consensus 97 SderGisvvr--~K-ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt--------------sdaq~aLrr~mE~~--s 157 (346)
T KOG0989|consen 97 SDERGISVVR--EK-IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT--------------SDAQAALRRTMEDF--S 157 (346)
T ss_pred cccccccchh--hh-hcCHHHHhhccccccCCCCCcceEEEEechhhhh--------------HHHHHHHHHHHhcc--c
Confidence 4333222111 00 1123322221 1 2799999999984 34567888888864 4
Q ss_pred CcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHcCCCCHHHHHHHHHH
Q 003525 626 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVD-LSALARYTHGFSGADITEVCQR 704 (813)
Q Consensus 626 ~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d-~~~la~~~~g~sg~di~~l~~~ 704 (813)
..+.+|..||.++.|...+.+ |.. .+.|++...+.....|+.+..+.++.-+.| +..+++. |++|++..+..
T Consensus 158 ~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~----S~GdLR~Ait~ 230 (346)
T KOG0989|consen 158 RTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKI----SDGDLRRAITT 230 (346)
T ss_pred cceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH----cCCcHHHHHHH
Confidence 567788889999999888887 886 678888888888888998888877764444 4556664 44566655443
Q ss_pred H
Q 003525 705 A 705 (813)
Q Consensus 705 a 705 (813)
.
T Consensus 231 L 231 (346)
T KOG0989|consen 231 L 231 (346)
T ss_pred H
Confidence 3
No 167
>PRK05642 DNA replication initiation factor; Validated
Probab=99.34 E-value=1.9e-11 Score=126.92 Aligned_cols=162 Identities=16% Similarity=0.193 Sum_probs=111.8
Q ss_pred ceeeeecCCCCChhHHHHHHHHHh---CCeEEEEeccchhhhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCC
Q 003525 523 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 599 (813)
Q Consensus 523 ~gilL~GppGtGKT~la~ala~~~---~~~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~ 599 (813)
..++|+||+|+|||+|++++++++ +...++++..++...+ ..+.+..+.. .+++|||++.+.++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~~--d~LiiDDi~~~~~~--- 112 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQY--ELVCLDDLDVIAGK--- 112 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhhC--CEEEEechhhhcCC---
Confidence 568999999999999999999765 4567788887775421 2233333333 59999999987432
Q ss_pred CCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCC---CCccccCCCCc--ccccccCCCCHHHHHHHHHHHhcc
Q 003525 600 STGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDI---IDPALLRPGRL--DQLIYIPLPDEASRLQIFKACLRK 674 (813)
Q Consensus 600 ~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~---ld~allr~gRf--~~~i~~~~p~~~~r~~Il~~~l~~ 674 (813)
......|+..++.....++.+||+++..|.. +.|.|.+ || ..++.+.+|+.++|..|++..+..
T Consensus 113 ---------~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~ 181 (234)
T PRK05642 113 ---------ADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASR 181 (234)
T ss_pred ---------hHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHH
Confidence 1223456666666656667788888877754 3688887 77 467788999999999999966655
Q ss_pred CCCCCccc-HHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 003525 675 SPISPDVD-LSALARYTHGFSGADITEVCQRACKYA 709 (813)
Q Consensus 675 ~~~~~~~d-~~~la~~~~g~sg~di~~l~~~a~~~a 709 (813)
.++.-+.+ ++.|++... -+.+.+.+++......+
T Consensus 182 ~~~~l~~ev~~~L~~~~~-~d~r~l~~~l~~l~~~~ 216 (234)
T PRK05642 182 RGLHLTDEVGHFILTRGT-RSMSALFDLLERLDQAS 216 (234)
T ss_pred cCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHH
Confidence 44432222 566666655 47777777777654433
No 168
>PRK04195 replication factor C large subunit; Provisional
Probab=99.34 E-value=2.7e-11 Score=139.37 Aligned_cols=183 Identities=27% Similarity=0.384 Sum_probs=127.3
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhh
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM 286 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~ 286 (813)
+++.+.+++++.|.+++++.+++++..... -.++.++||+|||||||||+|++||++++..++.+++++..
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~---------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r 76 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWLK---------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR 76 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccc
Confidence 456788899999999999999999864211 12367899999999999999999999999999999987643
Q ss_pred hhhcchhHHHHHHHHHHHHh------cCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCC
Q 003525 287 SKLAGESESNLRKAFEEAEK------NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNR 360 (813)
Q Consensus 287 ~~~~g~~~~~l~~vf~~a~~------~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~ 360 (813)
. ...++.+...+.. ..+.+|+|||+|.+..+.. ......|+..+.. ....+|.++|.
T Consensus 77 ~------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d-------~~~~~aL~~~l~~----~~~~iIli~n~ 139 (482)
T PRK04195 77 T------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED-------RGGARAILELIKK----AKQPIILTAND 139 (482)
T ss_pred c------HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc-------hhHHHHHHHHHHc----CCCCEEEeccC
Confidence 2 1223333332221 2467999999999865321 1233556666652 22334557788
Q ss_pred CCCCCH-HhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCCCc
Q 003525 361 PNSIDP-ALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYV 418 (813)
Q Consensus 361 ~~~ld~-~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 418 (813)
+..+.. .+++ ....+.++.|+..+...+++..+....+. ++..+..++..+.|-.
T Consensus 140 ~~~~~~k~Lrs---r~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDl 196 (482)
T PRK04195 140 PYDPSLRELRN---ACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDL 196 (482)
T ss_pred ccccchhhHhc---cceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 887776 6665 34679999999999999998777544332 3445777887776543
No 169
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.34 E-value=9.4e-12 Score=135.81 Aligned_cols=156 Identities=21% Similarity=0.259 Sum_probs=108.2
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhhhcc
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 563 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~~~v 563 (813)
+.+++++.|.+++++.|...+.. + ..+..++|+||||+|||++|+++++..+.+++.+++.+ .. +
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~-~ 81 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR-I 81 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-H
Confidence 45789999999999988776542 1 22345777999999999999999999998898888876 11 1
Q ss_pred cccHHHHHHHHHHH-HhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCCCc
Q 003525 564 GESEANVREIFDKA-RQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDP 642 (813)
Q Consensus 564 g~se~~i~~vF~~a-~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~ 642 (813)
......+....... ....+.++||||+|.+.. ....+.|.+.|+.. ..++.+|++||.++.+++
T Consensus 82 ~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-------------~~~~~~L~~~le~~--~~~~~~Ilt~n~~~~l~~ 146 (316)
T PHA02544 82 DFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-------------ADAQRHLRSFMEAY--SKNCSFIITANNKNGIIE 146 (316)
T ss_pred HHHHHHHHHHHHhhcccCCCeEEEEECcccccC-------------HHHHHHHHHHHHhc--CCCceEEEEcCChhhchH
Confidence 11111222211111 113468999999998721 11223444445543 245678889999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHh
Q 003525 643 ALLRPGRLDQLIYIPLPDEASRLQIFKACL 672 (813)
Q Consensus 643 allr~gRf~~~i~~~~p~~~~r~~Il~~~l 672 (813)
++.+ ||. .+.|+.|+.+++.++++..+
T Consensus 147 ~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 147 PLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred HHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 9998 885 78999999999988876544
No 170
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.34 E-value=1.5e-11 Score=140.33 Aligned_cols=63 Identities=14% Similarity=0.201 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCCCHHhhc
Q 003525 294 ESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRR 370 (813)
Q Consensus 294 ~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r 370 (813)
..+.|..+..+.-..|++|++|| |.+..+...+.+|-..+..+.. .+|..+|+.+.||....+
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDE----------PTNHLD~~~i~WLe~~L~~~~g----tviiVSHDR~FLd~V~t~ 219 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDE----------PTNHLDLESIEWLEDYLKRYPG----TVIVVSHDRYFLDNVATH 219 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcC----------CCcccCHHHHHHHHHHHHhCCC----cEEEEeCCHHHHHHHhhh
Confidence 45567778888888999999999 6666667777888888875543 344467877777665554
No 171
>PF02359 CDC48_N: Cell division protein 48 (CDC48), N-terminal domain; InterPro: IPR003338 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The VAT protein of the archaebacterium Thermoplasma acidophilum, like all other members of the Cdc48/p97 family of AAA ATPases, has two ATPase domains and a 185-residue amino-terminal substrate-recognition domain, VAT-N. VAT shows activity in protein folding and unfolding and thus shares the common function of these ATPases in disassembly and/or degradation of protein complexes. VAT-N is composed of two equally sized subdomains. The amino-terminal subdomain VAT-Nn forms a double-psi beta-barrel whose pseudo-twofold symmetry is mirrored by an internal sequence repeat of 42 residues. The carboxy-terminal subdomain VAT-Nc forms a novel six-stranded beta-clam fold []. Together, VAT-Nn and VAT-Nc form a kidney-shaped structure, in close agreement with results from electron microscopy. VAT-Nn is related to numerous proteins including prokaryotic transcription factors, metabolic enzymes, the protease cofactors UFD1 and PrlF, and aspartic proteinases. ; GO: 0005524 ATP binding; PDB: 1CZ4_A 1CZ5_A 3CF3_C 3CF1_A 3CF2_A 1S3S_D 1E32_A 1R7R_A 2PJH_B 1CR5_B ....
Probab=99.33 E-value=5.8e-12 Score=109.28 Aligned_cols=80 Identities=39% Similarity=0.620 Sum_probs=66.7
Q ss_pred eEEEccccCC---CCcEEEeCHHHHHhcCCCCCCEEEEecCCCceEEEEEEecCCC--CCCeEEecHHHHhhccccCCCe
Q 003525 37 RLVVDEAIND---DNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVLSDELC--EASKVRVNKVVRSNLRVRLGDV 111 (813)
Q Consensus 37 ~~~v~~~~~~---~~~~v~l~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~r~~~~~~~g~~ 111 (813)
+|+|.++..+ ++++|+|||+.|.+||+..||+|.|.|. + .++|.||+.... +++.|+|+..+|+|+|+++||.
T Consensus 1 ~L~V~~~p~~~~~~~n~v~v~~~~m~~l~l~~gd~v~i~g~-~-~tv~~v~~~~~~~~~~g~I~l~~~~R~n~~v~igd~ 78 (87)
T PF02359_consen 1 RLRVAEAPSDEDAGTNCVRVSPEDMEELGLFPGDVVLISGK-R-KTVAFVFPDRPDDSPPGVIRLSGIQRKNAGVSIGDR 78 (87)
T ss_dssp EEEEEE-SSSHHHCTTEEEEEHHHHHCTTT-TTEEEEEETT-T-EEEEEEEEECCSTTCTTEEEE-HHHHHHCT--TTSE
T ss_pred CcEEEeCCChHhCCCCEEEEcHHHHHHcCCCCccEEEEeCC-c-eEEEEEEECCCCCCCCCEEEECHHHHhhCCcCCCCE
Confidence 5889888743 8999999999999999999999999994 3 499999987644 7899999999999999999999
Q ss_pred EEEEecC
Q 003525 112 VSVHPCP 118 (813)
Q Consensus 112 v~v~~~~ 118 (813)
|+|+++.
T Consensus 79 V~V~~~~ 85 (87)
T PF02359_consen 79 VTVRPYD 85 (87)
T ss_dssp EEEEEET
T ss_pred EEEEECC
Confidence 9999975
No 172
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=5.1e-11 Score=132.93 Aligned_cols=178 Identities=19% Similarity=0.229 Sum_probs=123.8
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe----------
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~---------- 276 (813)
+++.+.+|+++.|.++.+..|+.++... ..+..+||+||+||||||+|+++|+.++..
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~ 77 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNE 77 (484)
T ss_pred HHhCCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCC
Confidence 4567889999999999999998887631 124468999999999999999999988652
Q ss_pred --------------EEEEechhhhhhhcchhHHHHHHHHHHHH----hcCCcEEEeccchhccCCCCCCchhHHHHHHHH
Q 003525 277 --------------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (813)
Q Consensus 277 --------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (813)
++.+++.. ......++.+.+.+. .....|+||||+|.+.. ...+.
T Consensus 78 C~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~-----------~A~NA 140 (484)
T PRK14956 78 CTSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD-----------QSFNA 140 (484)
T ss_pred CcHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH-----------HHHHH
Confidence 12222211 111233444444332 33456999999998842 24567
Q ss_pred HHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCCC
Q 003525 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 417 (813)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 417 (813)
|+..++.. ...+++|.+|+.++.+.+.+++ |+ ..+.|..++..+-.+.++..+....+. ++..+..++....|-
T Consensus 141 LLKtLEEP--p~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd 215 (484)
T PRK14956 141 LLKTLEEP--PAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGS 215 (484)
T ss_pred HHHHhhcC--CCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCh
Confidence 77777653 3578888889999999999988 65 457888888877777777666544332 344577788777765
Q ss_pred c
Q 003525 418 V 418 (813)
Q Consensus 418 ~ 418 (813)
.
T Consensus 216 ~ 216 (484)
T PRK14956 216 V 216 (484)
T ss_pred H
Confidence 3
No 173
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=4.3e-11 Score=138.06 Aligned_cols=179 Identities=16% Similarity=0.222 Sum_probs=125.6
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe----------
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~---------- 276 (813)
+++.+.+|++|.|+++.++.|+.++..- ..+..+||+||+|+||||++++|++.+++.
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~ 75 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGV 75 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcc
Confidence 4577889999999999999998887631 224568999999999999999999988642
Q ss_pred --------------EEEEechhhhhhhcchhHHHHHHHHHHHHh----cCCcEEEeccchhccCCCCCCchhHHHHHHHH
Q 003525 277 --------------FFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (813)
Q Consensus 277 --------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (813)
++.++..+ ...-..++.+++.+.. ....|+||||+|.|.. ...+.
T Consensus 76 C~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-----------~A~NA 138 (830)
T PRK07003 76 CRACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-----------HAFNA 138 (830)
T ss_pred cHHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-----------HHHHH
Confidence 22222211 1122345555555432 3346999999998842 23466
Q ss_pred HHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCCC
Q 003525 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 417 (813)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 417 (813)
|+..|++.. ..+.+|.+||.++.|.+.+++ |+ ..+.|..+..++..+.|+..+....+. ++..+..|+....|-
T Consensus 139 LLKtLEEPP--~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gs 213 (830)
T PRK07003 139 MLKTLEEPP--PHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGS 213 (830)
T ss_pred HHHHHHhcC--CCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 777777543 367778888999999999887 65 568899999888888887766543332 344567777777775
Q ss_pred ch
Q 003525 418 VG 419 (813)
Q Consensus 418 ~~ 419 (813)
..
T Consensus 214 mR 215 (830)
T PRK07003 214 MR 215 (830)
T ss_pred HH
Confidence 54
No 174
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=4.5e-11 Score=135.53 Aligned_cols=178 Identities=17% Similarity=0.250 Sum_probs=122.2
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCC-----------
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA----------- 275 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~----------- 275 (813)
+++.+.+|+++.|+++.++.|+.++... ..+..+||+|||||||||+|+++|+.++.
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~ 73 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNE 73 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcc
Confidence 4567889999999999988888877531 23456999999999999999999998764
Q ss_pred -------------eEEEEechhhhhhhcchhHHHHHHHHHHHHh----cCCcEEEeccchhccCCCCCCchhHHHHHHHH
Q 003525 276 -------------FFFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (813)
Q Consensus 276 -------------~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (813)
.++.+++.. ...-..++.+.+.+.. ....++||||+|.+.. ...+.
T Consensus 74 c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~-----------~a~~~ 136 (472)
T PRK14962 74 CRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK-----------EAFNA 136 (472)
T ss_pred cHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH-----------HHHHH
Confidence 233443321 1112345555544332 2346999999998842 22456
Q ss_pred HHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcc-ccchhhHHHHhhcCCC
Q 003525 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTHGY 417 (813)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l-~~~~~l~~la~~t~g~ 417 (813)
|+..++... ..+++|++|+.+..+++++++ |+ ..+.+..++..+...+++..+....+ .++..+..++..+.|-
T Consensus 137 LLk~LE~p~--~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~Gd 211 (472)
T PRK14962 137 LLKTLEEPP--SHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGG 211 (472)
T ss_pred HHHHHHhCC--CcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC
Confidence 677776432 356667677778889999987 66 47899999999988888876654332 2334567777776654
Q ss_pred c
Q 003525 418 V 418 (813)
Q Consensus 418 ~ 418 (813)
.
T Consensus 212 l 212 (472)
T PRK14962 212 L 212 (472)
T ss_pred H
Confidence 3
No 175
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=2.8e-11 Score=137.88 Aligned_cols=188 Identities=22% Similarity=0.315 Sum_probs=129.3
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCe-------------
Q 003525 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 549 (813)
Q Consensus 483 ~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~------------- 549 (813)
.+.+|+++.|++.+.+.|...+.. -..+..+|||||+|+|||++|+++|..+...
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n 78 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN 78 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH
Confidence 346789999999999988777643 1234558999999999999999999987531
Q ss_pred -----------EEEEeccchhhhcccccHHHHHHHHHHHHh----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHH
Q 003525 550 -----------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 614 (813)
Q Consensus 550 -----------~i~v~~~~l~~~~vg~se~~i~~vF~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~ 614 (813)
++.++++. ...-..++.+.+.+.. ..+.|++|||+|.+. ....+.
T Consensus 79 c~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt--------------~~a~na 138 (486)
T PRK14953 79 CVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT--------------KEAFNA 138 (486)
T ss_pred HHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC--------------HHHHHH
Confidence 12221110 0112345555555433 345799999999873 234678
Q ss_pred HHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHcCCC
Q 003525 615 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARYTHGF 693 (813)
Q Consensus 615 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-d~~~la~~~~g~ 693 (813)
||..|+..+ ..+++|.+|+.++.+.+++.+ |+. .+.|++|+.++...+++..++..++.-+. .+..+++.+.|
T Consensus 139 LLk~LEepp--~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G- 212 (486)
T PRK14953 139 LLKTLEEPP--PRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG- 212 (486)
T ss_pred HHHHHhcCC--CCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 888888543 345555566677888888887 775 78999999999999999999877765333 35667766554
Q ss_pred CHHHHHHHHHHHHHH
Q 003525 694 SGADITEVCQRACKY 708 (813)
Q Consensus 694 sg~di~~l~~~a~~~ 708 (813)
+.+++.+++..+...
T Consensus 213 ~lr~al~~Ldkl~~~ 227 (486)
T PRK14953 213 GMRDAASLLDQASTY 227 (486)
T ss_pred CHHHHHHHHHHHHHh
Confidence 566666666665443
No 176
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=2.9e-11 Score=137.81 Aligned_cols=187 Identities=16% Similarity=0.238 Sum_probs=127.2
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe----------
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~---------- 276 (813)
.++.+.+|++|.|.++.++.|++++..- ..+..+||+||+|+||||+++.|++.+++.
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~ 75 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITA 75 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCC
Confidence 3567889999999999999999888631 224568999999999999999999998751
Q ss_pred -------------------EEEEechhhhhhhcchhHHHHHHHHHHHH----hcCCcEEEeccchhccCCCCCCchhHHH
Q 003525 277 -------------------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVER 333 (813)
Q Consensus 277 -------------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~ 333 (813)
++.+++.+ ...-..++.+++... .....|+||||+|.|..
T Consensus 76 ~PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~----------- 138 (700)
T PRK12323 76 QPCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN----------- 138 (700)
T ss_pred CCCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH-----------
Confidence 12222210 112334555555432 33456999999998842
Q ss_pred HHHHHHHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHh
Q 003525 334 RIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAK 412 (813)
Q Consensus 334 ~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~ 412 (813)
...+.|+..|++.. .++++|.+||.++.|.+.+++ |+ ..+.|..++.++..+.|+..+....+. ++..+..++.
T Consensus 139 ~AaNALLKTLEEPP--~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~ 213 (700)
T PRK12323 139 HAFNAMLKTLEEPP--EHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQ 213 (700)
T ss_pred HHHHHHHHhhccCC--CCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 23467777777533 467778888999999999987 55 557899999888888877665443332 2234566777
Q ss_pred hcCCCchHHHHHHHHH
Q 003525 413 DTHGYVGSDLAALCTE 428 (813)
Q Consensus 413 ~t~g~~~~dl~~l~~~ 428 (813)
...|-.. +...++..
T Consensus 214 ~A~Gs~R-dALsLLdQ 228 (700)
T PRK12323 214 AAQGSMR-DALSLTDQ 228 (700)
T ss_pred HcCCCHH-HHHHHHHH
Confidence 7666543 33444433
No 177
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.32 E-value=8.2e-12 Score=128.18 Aligned_cols=171 Identities=22% Similarity=0.350 Sum_probs=115.0
Q ss_pred ceeeeecCCCCChhHHHHHHHHHh-----CCeEEEEeccchhhhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhcc
Q 003525 523 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 597 (813)
Q Consensus 523 ~gilL~GppGtGKT~la~ala~~~-----~~~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r 597 (813)
..++||||+|+|||+|.++++++. +...+++++.++...+.......-..-|..-.. ...+|+||+++.+..+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~-~~DlL~iDDi~~l~~~- 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR-SADLLIIDDIQFLAGK- 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC-TSSEEEEETGGGGTTH-
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh-cCCEEEEecchhhcCc-
Confidence 458999999999999999999875 456889998888766543322221222333333 3369999999998542
Q ss_pred CCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCC---CccccCCCCcc--cccccCCCCHHHHHHHHHHHh
Q 003525 598 GSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII---DPALLRPGRLD--QLIYIPLPDEASRLQIFKACL 672 (813)
Q Consensus 598 ~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l---d~allr~gRf~--~~i~~~~p~~~~r~~Il~~~l 672 (813)
.+....|+..++.+...++.+||++...|..+ ++.|.+ ||. .++.+.+||.+.|.+|++..+
T Consensus 113 -----------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a 179 (219)
T PF00308_consen 113 -----------QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKA 179 (219)
T ss_dssp -----------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHH
Confidence 34566777777776666777888887777654 566766 765 588899999999999999999
Q ss_pred ccCCCCCccc-HHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 003525 673 RKSPISPDVD-LSALARYTHGFSGADITEVCQRACKYA 709 (813)
Q Consensus 673 ~~~~~~~~~d-~~~la~~~~g~sg~di~~l~~~a~~~a 709 (813)
...++.-+.+ ++.|++... -+.++|..++......+
T Consensus 180 ~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 180 KERGIELPEEVIEYLARRFR-RDVRELEGALNRLDAYA 216 (219)
T ss_dssp HHTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHHHHHh
Confidence 8777664444 455666544 47888888887765544
No 178
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=3.5e-11 Score=139.09 Aligned_cols=187 Identities=21% Similarity=0.275 Sum_probs=132.5
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCe-------------
Q 003525 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 549 (813)
Q Consensus 483 ~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~------------- 549 (813)
.+.+|++|.|++.+++.|...+.. + ..+..+|||||+|+|||++|+++|..+...
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIES-----------N-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 356899999999999988876642 1 234569999999999999999999987532
Q ss_pred -----------EEEEeccchhhhcccccHHHHHHHHHHHH----hCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHH
Q 003525 550 -----------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 614 (813)
Q Consensus 550 -----------~i~v~~~~l~~~~vg~se~~i~~vF~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~ 614 (813)
++.+++.. ...-..++.+.+.+. .....|++|||+|.+- ...++.
T Consensus 79 C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls--------------~~a~na 138 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS--------------NSAFNA 138 (563)
T ss_pred HHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC--------------HHHHHH
Confidence 22232211 011234555554332 3455799999999872 346788
Q ss_pred HHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHcCCC
Q 003525 615 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGF 693 (813)
Q Consensus 615 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~~~g~ 693 (813)
||..|+. ....+++|++|+.++.|.+++.+ |+. .+.|.+++.++..++++..++..++.-+ ..+..|++...|
T Consensus 139 LLK~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G- 212 (563)
T PRK06647 139 LLKTIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG- 212 (563)
T ss_pred HHHhhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 8988885 34467777777778888888887 886 6899999999999999988876665432 235667776655
Q ss_pred CHHHHHHHHHHHHH
Q 003525 694 SGADITEVCQRACK 707 (813)
Q Consensus 694 sg~di~~l~~~a~~ 707 (813)
+.+++.+++..+..
T Consensus 213 dlR~alslLdklis 226 (563)
T PRK06647 213 SVRDAYTLFDQVVS 226 (563)
T ss_pred CHHHHHHHHHHHHh
Confidence 67777777766543
No 179
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=3.1e-11 Score=134.46 Aligned_cols=192 Identities=19% Similarity=0.283 Sum_probs=129.3
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccch----
Q 003525 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL---- 558 (813)
Q Consensus 483 ~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l---- 558 (813)
.+.+|++++|++.+++.+...+.. + ..+.+++||||||+|||++|+++|..+........+.++
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~-----------~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIEN-----------N-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 356899999999999888776543 1 235679999999999999999999987542111000000
Q ss_pred --hhhcccccHHHHHHHHHHHHhC----CCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEe
Q 003525 559 --LTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIG 632 (813)
Q Consensus 559 --~~~~vg~se~~i~~vF~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~ 632 (813)
++..-......++.+++.+... .+.|+++||+|.+.. ..++.|+..|+.. ....++|+
T Consensus 80 ~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~--------------~~~~~ll~~le~~--~~~~~~Il 143 (367)
T PRK14970 80 FELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS--------------AAFNAFLKTLEEP--PAHAIFIL 143 (367)
T ss_pred EEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH--------------HHHHHHHHHHhCC--CCceEEEE
Confidence 0011112245677788766532 346999999998732 2467788877753 33455666
Q ss_pred ccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 003525 633 ATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEVCQRAC 706 (813)
Q Consensus 633 aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~d~~~la~~~~g~sg~di~~l~~~a~ 706 (813)
+|+.+..+.+++.+ |+. .+.|++|+.++...++...+.+.++. ++..+..+++.+.| +.+.+.+.++...
T Consensus 144 ~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~ 214 (367)
T PRK14970 144 ATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVV 214 (367)
T ss_pred EeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 67777888888887 764 68999999999999999888776653 23346667776543 5555555555544
No 180
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=3.7e-11 Score=123.37 Aligned_cols=132 Identities=24% Similarity=0.404 Sum_probs=94.0
Q ss_pred ccccccchhhhhhhccccCCCCChhhhhhh----cCCC-CceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchh-hh
Q 003525 488 EDIGGLDNVKRELQETVQYPVEHPEKFEKF----GMSP-SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TM 561 (813)
Q Consensus 488 ~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~----~~~~-~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~-~~ 561 (813)
+.++|++..|+.|.-.+-. |...+... +... ..++||.||+|||||+||+.+|..++.||..-++..|. ..
T Consensus 61 ~YVIGQe~AKKvLsVAVYN---HYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG 137 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVYN---HYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG 137 (408)
T ss_pred hheecchhhhceeeeeehh---HHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcc
Confidence 4588999999888654322 21112111 1112 34599999999999999999999999999888888776 47
Q ss_pred cccccHHH-HHHHHHHHH----hCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhcc
Q 003525 562 WFGESEAN-VREIFDKAR----QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGM 622 (813)
Q Consensus 562 ~vg~se~~-i~~vF~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~ 622 (813)
|+|+.-.+ +-++.+.|. .....|++|||||.++.+-.+.+-..+-.++.|.+.||..++|-
T Consensus 138 YVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 138 YVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred ccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 99988554 456666542 22346999999999988754433333445677999999999985
No 181
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.30 E-value=8.1e-11 Score=132.83 Aligned_cols=172 Identities=27% Similarity=0.453 Sum_probs=119.3
Q ss_pred cccCCCCcccccChHHHHHH---HHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEech
Q 003525 207 ERLNEVGYDDVGGVRKQMAQ---IRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGP 283 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~---i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~ 283 (813)
+++.+-+++++.|.++.+.. +++++.. ....+++|+|||||||||+|++|++.++..++.+++.
T Consensus 4 ~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~ 70 (413)
T PRK13342 4 ERMRPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAV 70 (413)
T ss_pred hhhCCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecc
Confidence 34567789999999998766 7777653 2244799999999999999999999999999988875
Q ss_pred hhhhhhcchhHHHHHHHHHHHH----hcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecC
Q 003525 284 EIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATN 359 (813)
Q Consensus 284 ~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn 359 (813)
.. ....++.+++.+. .....+|||||+|.+... ..+.|+..++. ..+++|++|+
T Consensus 71 ~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~-----------~q~~LL~~le~----~~iilI~att 128 (413)
T PRK13342 71 TS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA-----------QQDALLPHVED----GTITLIGATT 128 (413)
T ss_pred cc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-----------HHHHHHHHhhc----CcEEEEEeCC
Confidence 32 1233445555443 235679999999987421 23455555542 4566666543
Q ss_pred --CCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCC-----ccccchhhHHHHhhcCCC
Q 003525 360 --RPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNM-----KLAEDVDLERVAKDTHGY 417 (813)
Q Consensus 360 --~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~-----~l~~~~~l~~la~~t~g~ 417 (813)
....+++++++ |+ ..+.+..++.++...+++..+... .+ .+..+..++..+.|.
T Consensus 129 ~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i-~~~al~~l~~~s~Gd 189 (413)
T PRK13342 129 ENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVEL-DDEALDALARLANGD 189 (413)
T ss_pred CChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCC-CHHHHHHHHHhCCCC
Confidence 34578889988 66 678899999999998888765431 22 233456677666554
No 182
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.30 E-value=4e-11 Score=124.32 Aligned_cols=159 Identities=14% Similarity=0.203 Sum_probs=103.6
Q ss_pred CCceeeeecCCCCChhHHHHHHHHHh---CCeEEEEeccchhhhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhcc
Q 003525 521 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 597 (813)
Q Consensus 521 ~~~gilL~GppGtGKT~la~ala~~~---~~~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r 597 (813)
...+++|+||+|||||+||+++++.. +..++.+++.++... +.. .....+++|||+|.+..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~~--~~~~~~liiDdi~~l~~-- 104 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FDF--DPEAELYAVDDVERLDD-- 104 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hhh--cccCCEEEEeChhhcCc--
Confidence 44579999999999999999999876 456777777665321 111 22346999999998632
Q ss_pred CCCCCCCCchHHHHHHHHHHHHhccCCCCcE-EEEeccCCCC--CCCccccCCCCc--ccccccCCCCHHHHHHHHHHHh
Q 003525 598 GSSTGDAGGAADRVLNQLLTEMDGMNAKKTV-FIIGATNRPD--IIDPALLRPGRL--DQLIYIPLPDEASRLQIFKACL 672 (813)
Q Consensus 598 ~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v-~vi~aTn~~~--~ld~allr~gRf--~~~i~~~~p~~~~r~~Il~~~l 672 (813)
. ....|+..++.....+.. ++++++..|. .+.+.+.+ || ...+.+|+|+.+++..+++...
T Consensus 105 ---------~---~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 105 ---------A---QQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred ---------h---HHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 1 123444445444334444 4444443332 24566765 66 5799999999999999999887
Q ss_pred ccCCCCCccc-HHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 003525 673 RKSPISPDVD-LSALARYTHGFSGADITEVCQRACKYAI 710 (813)
Q Consensus 673 ~~~~~~~~~d-~~~la~~~~g~sg~di~~l~~~a~~~a~ 710 (813)
...++.-+.+ +..|++... -+.+++.++++.....|.
T Consensus 171 ~~~~v~l~~~al~~L~~~~~-gn~~~l~~~l~~l~~~~~ 208 (227)
T PRK08903 171 AERGLQLADEVPDYLLTHFR-RDMPSLMALLDALDRYSL 208 (227)
T ss_pred HHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHH
Confidence 6655543333 566666433 477888888877544443
No 183
>PRK08727 hypothetical protein; Validated
Probab=99.29 E-value=5.5e-11 Score=123.50 Aligned_cols=158 Identities=22% Similarity=0.259 Sum_probs=99.7
Q ss_pred ceeeeecCCCCChhHHHHHHHHHh---CCeEEEEeccchhhhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCC
Q 003525 523 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 599 (813)
Q Consensus 523 ~gilL~GppGtGKT~la~ala~~~---~~~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~ 599 (813)
..++|+||+|||||+|+.+++..+ +...+++...++. ..+..+++..... .+|+|||++.+....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~l~~~--dlLiIDDi~~l~~~~-- 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEALEGR--SLVALDGLESIAGQR-- 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHHHhcC--CEEEEeCcccccCCh--
Confidence 449999999999999999998775 3344555544432 2334455555433 599999999875421
Q ss_pred CCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCC---CccccCCCCc--ccccccCCCCHHHHHHHHHHHhcc
Q 003525 600 STGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII---DPALLRPGRL--DQLIYIPLPDEASRLQIFKACLRK 674 (813)
Q Consensus 600 ~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l---d~allr~gRf--~~~i~~~~p~~~~r~~Il~~~l~~ 674 (813)
. ....++..++.....+.-+|+.+.+.|..+ +++|.+ || ..++.+++|+.+++.+|++.++..
T Consensus 110 -------~---~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~ 177 (233)
T PRK08727 110 -------E---DEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQR 177 (233)
T ss_pred -------H---HHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHH
Confidence 1 122333444433333333555555566654 789988 86 568899999999999999987755
Q ss_pred CCCCCc-ccHHHHHHHcCCCCHHHHHHHHHHH
Q 003525 675 SPISPD-VDLSALARYTHGFSGADITEVCQRA 705 (813)
Q Consensus 675 ~~~~~~-~d~~~la~~~~g~sg~di~~l~~~a 705 (813)
.++.-+ .-+..|++...| +.+.+.++++..
T Consensus 178 ~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l 208 (233)
T PRK08727 178 RGLALDEAAIDWLLTHGER-ELAGLVALLDRL 208 (233)
T ss_pred cCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 444322 236677776553 333333334443
No 184
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.29 E-value=9.2e-11 Score=130.01 Aligned_cols=185 Identities=19% Similarity=0.305 Sum_probs=124.4
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe----------------
Q 003525 213 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------------- 276 (813)
Q Consensus 213 ~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~---------------- 276 (813)
.|++|+|+++.++.|++++..+..++. .++...+..+||+||+|+|||++|+++|..+...
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~---~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVA---AAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccc---ccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 478899999999999999986544322 2333456789999999999999999999886432
Q ss_pred -------EEEEechhhhhhhcchhHHHHHHHHHHHHh----cCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhc
Q 003525 277 -------FFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDG 345 (813)
Q Consensus 277 -------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~ 345 (813)
+..+... + ....-..++.+++.+.. ....|+||||+|.+.+. ..+.|+..|+.
T Consensus 80 ~~~~hpD~~~i~~~---~--~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-----------aanaLLk~LEe 143 (394)
T PRK07940 80 LAGTHPDVRVVAPE---G--LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-----------AANALLKAVEE 143 (394)
T ss_pred hcCCCCCEEEeccc---c--ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-----------HHHHHHHHhhc
Confidence 1111110 0 01123456777766543 23459999999998432 23667888875
Q ss_pred cccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhHHHHhhcCCCchHHHHHH
Q 003525 346 LKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAAL 425 (813)
Q Consensus 346 ~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l 425 (813)
... .+++|.+|+.++.+.+++++ |+ ..+.|+.|+.++..++|... ..+. ......++..++|..+..+.-+
T Consensus 144 p~~--~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~---~~~~-~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 144 PPP--RTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRR---DGVD-PETARRAARASQGHIGRARRLA 214 (394)
T ss_pred CCC--CCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHh---cCCC-HHHHHHHHHHcCCCHHHHHHHh
Confidence 432 34444455558999999998 65 67999999999887777532 1232 3345677888888877654433
No 185
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=7.5e-11 Score=132.20 Aligned_cols=187 Identities=19% Similarity=0.263 Sum_probs=126.3
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCe--------------
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 549 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~-------------- 549 (813)
..+|++|.|++.+++.|...+.. + +.+..+||+||||+|||++|+++|..+...
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~ 79 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE 79 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC
Confidence 46799999999999988766542 1 345569999999999999999999988542
Q ss_pred ------------------EEEEeccchhhhcccccHHHHHHHHHHHH----hCCCeEEEEecchhhhhccCCCCCCCCch
Q 003525 550 ------------------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSTGDAGGA 607 (813)
Q Consensus 550 ------------------~i~v~~~~l~~~~vg~se~~i~~vF~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~ 607 (813)
++.+++.+. ..-..|+.+.+.+. .....|+||||+|.+..
T Consensus 80 ~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~------------ 141 (397)
T PRK14955 80 PCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI------------ 141 (397)
T ss_pred CCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH------------
Confidence 222222110 11345555554442 22346999999998732
Q ss_pred HHHHHHHHHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCC-cccHHHH
Q 003525 608 ADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSAL 686 (813)
Q Consensus 608 ~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~d~~~l 686 (813)
...+.||..|+... ...++|.+|+.+..+-+.+.+ |+. ++.|++++.++..+.++..++..++.- +..+..|
T Consensus 142 --~~~~~LLk~LEep~--~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l 214 (397)
T PRK14955 142 --AAFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLI 214 (397)
T ss_pred --HHHHHHHHHHhcCC--CCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 24567788887433 345555566666777778876 775 899999999999989988887665432 2336677
Q ss_pred HHHcCCCCHHHHHHHHHHHHHH
Q 003525 687 ARYTHGFSGADITEVCQRACKY 708 (813)
Q Consensus 687 a~~~~g~sg~di~~l~~~a~~~ 708 (813)
++.+.| +.+.+.+.+..+...
T Consensus 215 ~~~s~g-~lr~a~~~L~kl~~~ 235 (397)
T PRK14955 215 GRKAQG-SMRDAQSILDQVIAF 235 (397)
T ss_pred HHHcCC-CHHHHHHHHHHHHHh
Confidence 776654 566666666665444
No 186
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=9.3e-11 Score=133.50 Aligned_cols=188 Identities=22% Similarity=0.299 Sum_probs=133.5
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCC---------------
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 548 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~--------------- 548 (813)
+.+|+++.|++.+++.|...+.. + ..+..+|||||+|+|||++|+++|..+..
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 46899999999999988876542 1 23455799999999999999999988631
Q ss_pred ---------eEEEEeccchhhhcccccHHHHHHHHHHHHh----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHH
Q 003525 549 ---------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 615 (813)
Q Consensus 549 ---------~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 615 (813)
.++.+++..- ..-..|+.+.+.... ....|++|||+|.+- ...++.|
T Consensus 78 ~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt--------------~~A~NAL 137 (535)
T PRK08451 78 QSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT--------------KEAFNAL 137 (535)
T ss_pred HHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHHHHHH
Confidence 1222222110 013456666655332 234699999998872 3467889
Q ss_pred HHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHcCCCC
Q 003525 616 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGFS 694 (813)
Q Consensus 616 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~d~~~la~~~~g~s 694 (813)
|..|+..+ ..+.+|.+|+.+..|.+++++ |. .+++|.+++.++....++..+++.++.- +..+..+++...| +
T Consensus 138 LK~LEEpp--~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-d 211 (535)
T PRK08451 138 LKTLEEPP--SYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-S 211 (535)
T ss_pred HHHHhhcC--CceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 99998653 345566666778888899987 86 4889999999999999998887766543 2346667776655 7
Q ss_pred HHHHHHHHHHHHHHH
Q 003525 695 GADITEVCQRACKYA 709 (813)
Q Consensus 695 g~di~~l~~~a~~~a 709 (813)
.+++.+++..+...+
T Consensus 212 lR~alnlLdqai~~~ 226 (535)
T PRK08451 212 LRDTLTLLDQAIIYC 226 (535)
T ss_pred HHHHHHHHHHHHHhc
Confidence 788888887766554
No 187
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.28 E-value=2e-10 Score=116.35 Aligned_cols=167 Identities=22% Similarity=0.331 Sum_probs=119.1
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHh---CCeEEEEechh
Q 003525 208 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPE 284 (813)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l---~~~~v~v~~~~ 284 (813)
.+..+.++++.|++.|++.|.+-....+. -.+..++||+|+.|||||++++++..+. +..++.|...+
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~---------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQ---------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHc---------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 45678999999999999999766553221 2478899999999999999999999876 55678787655
Q ss_pred hhhhhcchhHHHHHHHHHHHH-hcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccc--cCCcEEEEEecCCC
Q 003525 285 IMSKLAGESESNLRKAFEEAE-KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK--SRAHVIVMGATNRP 361 (813)
Q Consensus 285 l~~~~~g~~~~~l~~vf~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--~~~~vivi~atn~~ 361 (813)
+. .+..+++... ...+-|||+|++.+=.. ..-...|.+.|+|-- ...+|++.+|+|+.
T Consensus 91 L~---------~l~~l~~~l~~~~~kFIlf~DDLsFe~~----------d~~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 91 LG---------DLPELLDLLRDRPYKFILFCDDLSFEEG----------DTEYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred hc---------cHHHHHHHHhcCCCCEEEEecCCCCCCC----------cHHHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 53 2233444433 33567999999764211 112366777777643 24578888999976
Q ss_pred CCCCHH---------------------hhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc
Q 003525 362 NSIDPA---------------------LRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA 402 (813)
Q Consensus 362 ~~ld~~---------------------l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~ 402 (813)
+.+.+. +.-..||...+.|..|+.++-++|++.++....+.
T Consensus 152 HLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~ 213 (249)
T PF05673_consen 152 HLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLE 213 (249)
T ss_pred hccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 544332 22236899999999999999999999988766554
No 188
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.27 E-value=2.3e-10 Score=127.56 Aligned_cols=200 Identities=22% Similarity=0.303 Sum_probs=123.3
Q ss_pred ccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhC---------CeEEEEechhh
Q 003525 215 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---------AFFFLINGPEI 285 (813)
Q Consensus 215 ~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~---------~~~v~v~~~~l 285 (813)
+++.|.+++++.|...+.-.+. -..+.+++|+||||||||++++.++..+. ..+++++|...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~---------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR---------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 4689999999999888763221 13456799999999999999999998753 45788888543
Q ss_pred hh----------hhc--c--------hhHHHHHHHHHHHH-hcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhh
Q 003525 286 MS----------KLA--G--------ESESNLRKAFEEAE-KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMD 344 (813)
Q Consensus 286 ~~----------~~~--g--------~~~~~l~~vf~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 344 (813)
.+ ... + .....+..++.... ...+.+++|||+|.+.... ..+...|+.+.+
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~--------~~~L~~l~~~~~ 157 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD--------DDLLYQLSRARS 157 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC--------cHHHHhHhcccc
Confidence 21 110 0 01222344444443 2456789999999997321 123344444421
Q ss_pred cc-ccCCcEEEEEecCCCC---CCCHHhhccCCcc-eEEEcCCCCHHHHHHHHHHHhcC-C--ccccchhhHH---HHhh
Q 003525 345 GL-KSRAHVIVMGATNRPN---SIDPALRRFGRFD-REIDIGVPDEVGRLEILRIHTKN-M--KLAEDVDLER---VAKD 413 (813)
Q Consensus 345 ~~-~~~~~vivi~atn~~~---~ld~~l~r~~Rf~-~~i~i~~p~~~~R~~Il~~~~~~-~--~l~~~~~l~~---la~~ 413 (813)
.. ....++.+|+++|.++ .+++.+.+ ||. ..+.+++++.++..+|++..+.. . ...++..+.. ++..
T Consensus 158 ~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~ 235 (365)
T TIGR02928 158 NGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQ 235 (365)
T ss_pred ccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHH
Confidence 11 1225788888888875 46777765 554 67899999999999999987652 1 1122222333 3334
Q ss_pred cCCCchHHHHHHHHHHHHHHH
Q 003525 414 THGYVGSDLAALCTEAALQCI 434 (813)
Q Consensus 414 t~g~~~~dl~~l~~~a~~~~~ 434 (813)
+.|.... ...+|+.|...+.
T Consensus 236 ~~Gd~R~-al~~l~~a~~~a~ 255 (365)
T TIGR02928 236 EHGDARK-AIDLLRVAGEIAE 255 (365)
T ss_pred hcCCHHH-HHHHHHHHHHHHH
Confidence 4455433 3345666655444
No 189
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.26 E-value=2.5e-11 Score=128.41 Aligned_cols=132 Identities=25% Similarity=0.339 Sum_probs=94.2
Q ss_pred CceeeeecCCCCChhHHHHHHHHHhCCeEEEEecc------chhhhcccccHHHHH---------------------HHH
Q 003525 522 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP------ELLTMWFGESEANVR---------------------EIF 574 (813)
Q Consensus 522 ~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~------~l~~~~vg~se~~i~---------------------~vF 574 (813)
...++|+||||||||++|+++|..++.+++.+++. ++++.|.|.....+. .++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 45699999999999999999999999999988764 444444432222111 122
Q ss_pred HHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccC--------------CCCcEEEEeccCCCC--
Q 003525 575 DKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN--------------AKKTVFIIGATNRPD-- 638 (813)
Q Consensus 575 ~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~--------------~~~~v~vi~aTn~~~-- 638 (813)
..++. ..+++||||+.+- ..+.+.|+..|+... ...++.||+|+|...
T Consensus 101 ~A~~~--g~~lllDEi~r~~--------------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~ 164 (262)
T TIGR02640 101 LAVRE--GFTLVYDEFTRSK--------------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYA 164 (262)
T ss_pred HHHHc--CCEEEEcchhhCC--------------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccc
Confidence 22222 3599999999863 345666777665421 113567999999763
Q ss_pred ---CCCccccCCCCcccccccCCCCHHHHHHHHHHHh
Q 003525 639 ---IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACL 672 (813)
Q Consensus 639 ---~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l 672 (813)
.+++++++ || ..++++.|+.++-.+|++.+.
T Consensus 165 g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 165 GVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 46889998 98 589999999999999999875
No 190
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=1.6e-10 Score=134.45 Aligned_cols=188 Identities=17% Similarity=0.247 Sum_probs=127.8
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCe--------------
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 549 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~-------------- 549 (813)
..+|++|.|++.+++.|+..+.. -+.+..+||+||+|||||++|+++|..+...
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRM------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 56799999999999988776442 1345669999999999999999999988552
Q ss_pred ------------------EEEEeccchhhhcccccHHHHHHHHHHH----HhCCCeEEEEecchhhhhccCCCCCCCCch
Q 003525 550 ------------------FISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSTGDAGGA 607 (813)
Q Consensus 550 ------------------~i~v~~~~l~~~~vg~se~~i~~vF~~a----~~~~p~il~iDEid~l~~~r~~~~~~~~~~ 607 (813)
++.+++... ..-..|+.+-+.. ......|++|||+|.+.
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~~~~d~~s~------~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt------------- 140 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS------------- 140 (620)
T ss_pred CCccCHHHHHHhccCCCCeEEeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC-------------
Confidence 111221110 1124555555444 23345699999999873
Q ss_pred HHHHHHHHHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CcccHHHH
Q 003525 608 ADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSAL 686 (813)
Q Consensus 608 ~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~d~~~l 686 (813)
....+.||..|+... ..+++|++|+.+..|-+.+.+ |.. ++.|.+++.++....++..+++.++. ++..++.|
T Consensus 141 -~~a~naLLK~LEePp--~~tv~IL~t~~~~kLl~TI~S--Rc~-~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~L 214 (620)
T PRK14954 141 -TAAFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLI 214 (620)
T ss_pred -HHHHHHHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--hce-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 234678888888643 345555566667778888887 774 89999999999888888888766543 23346777
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHH
Q 003525 687 ARYTHGFSGADITEVCQRACKYA 709 (813)
Q Consensus 687 a~~~~g~sg~di~~l~~~a~~~a 709 (813)
++.+.| +.+++.+.+.....++
T Consensus 215 a~~s~G-dlr~al~eLeKL~~y~ 236 (620)
T PRK14954 215 ARKAQG-SMRDAQSILDQVIAFS 236 (620)
T ss_pred HHHhCC-CHHHHHHHHHHHHHhc
Confidence 776654 5555555555544443
No 191
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.26 E-value=1.4e-10 Score=139.11 Aligned_cols=163 Identities=22% Similarity=0.341 Sum_probs=117.5
Q ss_pred ccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhh--------
Q 003525 215 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM-------- 286 (813)
Q Consensus 215 ~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~-------- 286 (813)
.+..|+++.++.|.+++..... .+-..+..++|+||||||||++++.+|+.++..++.++.....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 3488999999999888764211 1123567899999999999999999999999998888754322
Q ss_pred -hhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccc-------------cCCcE
Q 003525 287 -SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK-------------SRAHV 352 (813)
Q Consensus 287 -~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-------------~~~~v 352 (813)
..+.|.....+...+..+....| +++|||+|.+....... ..+.|+..+|.-+ .-.++
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g~-------~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRGD-------PASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCCC-------HHHHHHHHhccccEEEEecccccccccCCce
Confidence 12444444455555555443444 89999999997653211 2356667666311 12578
Q ss_pred EEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHh
Q 003525 353 IVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHT 396 (813)
Q Consensus 353 ivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~ 396 (813)
++|+|+|.. .|+++|+. |+ ..+.+..++.++..+|.+.++
T Consensus 467 ~~i~TaN~~-~i~~aLl~--R~-~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 467 MFVATSNSM-NIPAPLLD--RM-EVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEEcCCCC-CCCHHHhc--ce-eeeecCCCCHHHHHHHHHHhh
Confidence 999999987 59999997 88 468999999999999998776
No 192
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.26 E-value=2.3e-10 Score=128.85 Aligned_cols=201 Identities=21% Similarity=0.286 Sum_probs=124.6
Q ss_pred ccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHh-----CCeEEEEechhhh---
Q 003525 215 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-----GAFFFLINGPEIM--- 286 (813)
Q Consensus 215 ~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l-----~~~~v~v~~~~l~--- 286 (813)
+.+.|-++++++|...+.-.+. -..+.+++|+||||||||++++.+++.+ +..+++++|....
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~---------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR---------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY 100 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH
Confidence 4588999999999877753111 1345679999999999999999999876 4567889885431
Q ss_pred -------hhhcc--------hhHHHHHHHHHHHHh-cCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCC
Q 003525 287 -------SKLAG--------ESESNLRKAFEEAEK-NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRA 350 (813)
Q Consensus 287 -------~~~~g--------~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~ 350 (813)
....+ .....+..+.+.... ..+.+|+|||+|.+....+ ......|+.+++.... .
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-------~~~l~~l~~~~~~~~~-~ 172 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-------NDVLYSLLRAHEEYPG-A 172 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-------chHHHHHHHhhhccCC-C
Confidence 11111 112223333333332 3467899999999973211 1234555555544332 3
Q ss_pred cEEEEEecCCCC---CCCHHhhccCCc-ceEEEcCCCCHHHHHHHHHHHhcCC---ccccchhhHHHHhhcCCCc--hHH
Q 003525 351 HVIVMGATNRPN---SIDPALRRFGRF-DREIDIGVPDEVGRLEILRIHTKNM---KLAEDVDLERVAKDTHGYV--GSD 421 (813)
Q Consensus 351 ~vivi~atn~~~---~ld~~l~r~~Rf-~~~i~i~~p~~~~R~~Il~~~~~~~---~l~~~~~l~~la~~t~g~~--~~d 421 (813)
++.+|+++|..+ .+++.+++ || ...+.+++++.++..+|++.+++.. ...++..++.++..+.+.. ...
T Consensus 173 ~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~ 250 (394)
T PRK00411 173 RIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARV 250 (394)
T ss_pred eEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHH
Confidence 677788877654 45676665 44 3578999999999999999776432 1223344566666663322 223
Q ss_pred HHHHHHHHHHHHH
Q 003525 422 LAALCTEAALQCI 434 (813)
Q Consensus 422 l~~l~~~a~~~~~ 434 (813)
+..++..|...+.
T Consensus 251 a~~ll~~a~~~a~ 263 (394)
T PRK00411 251 AIDLLRRAGLIAE 263 (394)
T ss_pred HHHHHHHHHHHHH
Confidence 3455666555443
No 193
>PRK06620 hypothetical protein; Validated
Probab=99.26 E-value=5.1e-11 Score=121.72 Aligned_cols=144 Identities=19% Similarity=0.268 Sum_probs=96.9
Q ss_pred ceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhhhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCC
Q 003525 523 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTG 602 (813)
Q Consensus 523 ~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~ 602 (813)
+.++||||||||||+|+++++...+..++. .... ....+ . ...+++||||+.+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~----~-~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEIL----E-KYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHH----h-cCCEEEEeccccch--------
Confidence 569999999999999999999887653322 1000 00111 1 23699999999541
Q ss_pred CCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCC--CCccccCCCCcc--cccccCCCCHHHHHHHHHHHhccCCCC
Q 003525 603 DAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDI--IDPALLRPGRLD--QLIYIPLPDEASRLQIFKACLRKSPIS 678 (813)
Q Consensus 603 ~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~--ld~allr~gRf~--~~i~~~~p~~~~r~~Il~~~l~~~~~~ 678 (813)
. ..|+..++.+...++.+||+++..|.. + |+|.+ |+. .++.+.+||.+.+..+++..+...++.
T Consensus 99 ------~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~ 166 (214)
T PRK06620 99 ------E---PALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVT 166 (214)
T ss_pred ------H---HHHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCC
Confidence 1 134444444445567788888877765 5 77776 775 578999999999999999888765544
Q ss_pred Cccc-HHHHHHHcCCCCHHHHHHHHHHH
Q 003525 679 PDVD-LSALARYTHGFSGADITEVCQRA 705 (813)
Q Consensus 679 ~~~d-~~~la~~~~g~sg~di~~l~~~a 705 (813)
-+.+ ++.|++...+ +.+.+.+++...
T Consensus 167 l~~ev~~~L~~~~~~-d~r~l~~~l~~l 193 (214)
T PRK06620 167 ISRQIIDFLLVNLPR-EYSKIIEILENI 193 (214)
T ss_pred CCHHHHHHHHHHccC-CHHHHHHHHHHH
Confidence 3222 6677776653 667777766653
No 194
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.25 E-value=1.3e-10 Score=134.56 Aligned_cols=200 Identities=25% Similarity=0.388 Sum_probs=127.5
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHh----------CCe
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAF 276 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l----------~~~ 276 (813)
+++.+.+|+++.|.++.++.++..+.. ..+.++||+||||||||++|+++.... +.+
T Consensus 57 ~~~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~ 123 (531)
T TIGR02902 57 EKTRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAA 123 (531)
T ss_pred HhhCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCC
Confidence 456778899999999999988765422 235689999999999999999997642 256
Q ss_pred EEEEechhh-------hhhhcchhHHHH---HHHHH----------HHHhcCCcEEEeccchhccCCCCCCchhHHHHHH
Q 003525 277 FFLINGPEI-------MSKLAGESESNL---RKAFE----------EAEKNAPSIIFIDELDSIAPKREKTHGEVERRIV 336 (813)
Q Consensus 277 ~v~v~~~~l-------~~~~~g~~~~~l---~~vf~----------~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~ 336 (813)
++.++|... .....+.....+ ...|. ........+|||||++.+.+. ..
T Consensus 124 fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~-----------~q 192 (531)
T TIGR02902 124 FVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV-----------QM 192 (531)
T ss_pred EEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH-----------HH
Confidence 788887531 001111000000 00000 011223469999999988542 23
Q ss_pred HHHHHHhhccc---------------------------cCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHH
Q 003525 337 SQLLTLMDGLK---------------------------SRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRL 389 (813)
Q Consensus 337 ~~Ll~~ld~~~---------------------------~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~ 389 (813)
+.|+..++.-. ...-.++.+|++.++.+++++++ |+ .++.++.++.+++.
T Consensus 193 ~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~ 269 (531)
T TIGR02902 193 NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIK 269 (531)
T ss_pred HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHH
Confidence 44444443210 01123455677789999999998 76 46889999999999
Q ss_pred HHHHHHhcCCccc-cchhhHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 003525 390 EILRIHTKNMKLA-EDVDLERVAKDTHGYVGSDLAALCTEAALQCIR 435 (813)
Q Consensus 390 ~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~ 435 (813)
+|++..+++..+. ++..++.++..+ +.++++.++++.|+..+..
T Consensus 270 ~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~ 314 (531)
T TIGR02902 270 EIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALG 314 (531)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhh
Confidence 9999887765432 233355555443 3678888888888765543
No 195
>PLN03025 replication factor C subunit; Provisional
Probab=99.25 E-value=2.1e-10 Score=125.15 Aligned_cols=175 Identities=19% Similarity=0.224 Sum_probs=117.1
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhC-----CeEEEEe
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG-----AFFFLIN 281 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~-----~~~v~v~ 281 (813)
+++.+.+++++.|.++.++.|+.++.. ....+++|+|||||||||+|+++|+++. ..++.++
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln 71 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN 71 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec
Confidence 456788999999999999999887653 1224699999999999999999999873 2355666
Q ss_pred chhhhhhhcchhHHHHHHHHHHHHh-------cCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEE
Q 003525 282 GPEIMSKLAGESESNLRKAFEEAEK-------NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIV 354 (813)
Q Consensus 282 ~~~l~~~~~g~~~~~l~~vf~~a~~-------~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viv 354 (813)
+++..+ ...++..+..... ....+++|||+|.+... ..+.|+..++..... ..+
T Consensus 72 ~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~-----------aq~aL~~~lE~~~~~--t~~ 132 (319)
T PLN03025 72 ASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG-----------AQQALRRTMEIYSNT--TRF 132 (319)
T ss_pred cccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH-----------HHHHHHHHHhcccCC--ceE
Confidence 554321 1123333222111 23569999999988532 234566666644332 334
Q ss_pred EEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCC
Q 003525 355 MGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHG 416 (813)
Q Consensus 355 i~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g 416 (813)
+.++|....+.+++++ |. ..+.+..|+.++....++..++.-.+. ++..+..++....|
T Consensus 133 il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g 192 (319)
T PLN03025 133 ALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG 192 (319)
T ss_pred EEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 5577888888888887 54 468999999999988888766543321 23456677666554
No 196
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=3e-10 Score=133.73 Aligned_cols=192 Identities=18% Similarity=0.221 Sum_probs=125.4
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEE--------
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFF-------- 278 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v-------- 278 (813)
+++.+.+|++|.|.++.++.|+.++... ..+..+||+||+||||||+|+++|+.+++...
T Consensus 8 eKyRP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~ 75 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGV 75 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCC
Confidence 4567889999999999999998887631 22445799999999999999999999865310
Q ss_pred EEechhhhhh-------hc---chhHHHHHHHHHHHH----hcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhh
Q 003525 279 LINGPEIMSK-------LA---GESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMD 344 (813)
Q Consensus 279 ~v~~~~l~~~-------~~---g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 344 (813)
.-.|..+... .. ...-..+|.+.+.+. .....|+||||+|.+. ....+.|+..|+
T Consensus 76 C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT-----------~eAqNALLKtLE 144 (944)
T PRK14949 76 CSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS-----------RSSFNALLKTLE 144 (944)
T ss_pred chHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-----------HHHHHHHHHHHh
Confidence 0011111100 00 011233455554432 2334699999999884 234577888887
Q ss_pred ccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCCCchHHHH
Q 003525 345 GLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYVGSDLA 423 (813)
Q Consensus 345 ~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~ 423 (813)
.... .+.+|.+|+.+..|.+.+++ |. ..+.|..++.++....|+..+....+. .+..+..++..+.|-.+ ++.
T Consensus 145 EPP~--~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R-~AL 218 (944)
T PRK14949 145 EPPE--HVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMR-DAL 218 (944)
T ss_pred ccCC--CeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHH
Confidence 6433 56666678888889888887 54 568899999988888887665433322 33456777777776544 333
Q ss_pred HHHH
Q 003525 424 ALCT 427 (813)
Q Consensus 424 ~l~~ 427 (813)
.++.
T Consensus 219 nLLd 222 (944)
T PRK14949 219 SLTD 222 (944)
T ss_pred HHHH
Confidence 3443
No 197
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=2.1e-10 Score=134.17 Aligned_cols=184 Identities=20% Similarity=0.284 Sum_probs=128.8
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCe-------------
Q 003525 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 549 (813)
Q Consensus 483 ~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~------------- 549 (813)
...+|+++.|++.+++.|...+... +...++||+||+|+|||++|+++|..+...
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C 78 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKC 78 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCccc
Confidence 3467999999999999988765531 234569999999999999999999997542
Q ss_pred -------------EEEEeccchhhhcccccHHHHHHHHHHHHhC----CCeEEEEecchhhhhccCCCCCCCCchHHHHH
Q 003525 550 -------------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADRVL 612 (813)
Q Consensus 550 -------------~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl 612 (813)
++.++. ..+..-..++++.+.+... ...|+||||+|.+- ....
T Consensus 79 ~~C~~i~~g~h~D~~ei~~------~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt--------------~~a~ 138 (620)
T PRK14948 79 ELCRAIAAGNALDVIEIDA------ASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS--------------TAAF 138 (620)
T ss_pred HHHHHHhcCCCccEEEEec------cccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC--------------HHHH
Confidence 222211 1123345778888776532 34699999999872 3467
Q ss_pred HHHHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHcC
Q 003525 613 NQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTH 691 (813)
Q Consensus 613 ~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~~~ 691 (813)
+.||..|+. ....+++|++|+.++.+-+.+.+ |+. .+.|+.++.++....++..+++.++.-+ ..+..+++.+.
T Consensus 139 naLLK~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~ 213 (620)
T PRK14948 139 NALLKTLEE--PPPRVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQ 213 (620)
T ss_pred HHHHHHHhc--CCcCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 889999985 34467777777778888888886 874 7889899888888888777766544322 23666777665
Q ss_pred CCCHHHHHHHHHH
Q 003525 692 GFSGADITEVCQR 704 (813)
Q Consensus 692 g~sg~di~~l~~~ 704 (813)
| +.+++.++++.
T Consensus 214 G-~lr~A~~lLek 225 (620)
T PRK14948 214 G-GLRDAESLLDQ 225 (620)
T ss_pred C-CHHHHHHHHHH
Confidence 4 34555555544
No 198
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=2.5e-10 Score=130.61 Aligned_cols=188 Identities=17% Similarity=0.224 Sum_probs=126.9
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe----------
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~---------- 276 (813)
.++.+.+|+++.|.+..++.|+.++.. -..+..+||+||+|+||||+|+++|+.+++.
T Consensus 7 rKyRPktFddVIGQe~vv~~L~~aI~~------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~ 74 (702)
T PRK14960 7 RKYRPRNFNELVGQNHVSRALSSALER------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEV 74 (702)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCcc
Confidence 356788999999999999999888863 1234678999999999999999999998642
Q ss_pred --------------EEEEechhhhhhhcchhHHHHHHHHHHHH----hcCCcEEEeccchhccCCCCCCchhHHHHHHHH
Q 003525 277 --------------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (813)
Q Consensus 277 --------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (813)
++.+++.+- ..-..+|.++..+. .....|+||||+|.+.. ...+.
T Consensus 75 C~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~-----------~A~NA 137 (702)
T PRK14960 75 CATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST-----------HSFNA 137 (702)
T ss_pred CHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH-----------HHHHH
Confidence 233333211 12334555555432 23446999999998842 23466
Q ss_pred HHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCCC
Q 003525 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 417 (813)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 417 (813)
|+..++... ..+.+|.+|+.+..+.+.+++ |+ ..+.+..++..+....++..++...+. ++..+..++..+.|
T Consensus 138 LLKtLEEPP--~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G- 211 (702)
T PRK14960 138 LLKTLEEPP--EHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG- 211 (702)
T ss_pred HHHHHhcCC--CCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 777777543 355666677888888888775 55 567899999888888887666544332 33456777777766
Q ss_pred chHHHHHHHHHH
Q 003525 418 VGSDLAALCTEA 429 (813)
Q Consensus 418 ~~~dl~~l~~~a 429 (813)
..+++..++..+
T Consensus 212 dLRdALnLLDQa 223 (702)
T PRK14960 212 SLRDALSLTDQA 223 (702)
T ss_pred CHHHHHHHHHHH
Confidence 344444444433
No 199
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.23 E-value=4e-11 Score=127.70 Aligned_cols=143 Identities=19% Similarity=0.210 Sum_probs=99.7
Q ss_pred cCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhhh--cccccHHHH----------HHHHHHHHhCCCeEE
Q 003525 518 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM--WFGESEANV----------REIFDKARQSAPCVL 585 (813)
Q Consensus 518 ~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~~--~vg~se~~i----------~~vF~~a~~~~p~il 585 (813)
++...++++|.||||||||++++.+|..++.+++.|++...++. ++|...-.+ ...+-.|.. .++++
T Consensus 60 ~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~il 138 (327)
T TIGR01650 60 GFAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVAL 138 (327)
T ss_pred HHhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEE
Confidence 34456679999999999999999999999999999987766554 455432111 112333433 34789
Q ss_pred EEecchhhhhccCCCCCCCCchHHHHHHHHHHH-----Hhc----cCCCCcEEEEeccCCCC------------CCCccc
Q 003525 586 FFDELDSIATQRGSSTGDAGGAADRVLNQLLTE-----MDG----MNAKKTVFIIGATNRPD------------IIDPAL 644 (813)
Q Consensus 586 ~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~-----ld~----~~~~~~v~vi~aTn~~~------------~ld~al 644 (813)
++||||..-+ .....++.+|.. +.+ +.....+.||+|+|..+ .+++|+
T Consensus 139 llDEin~a~p-----------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~ 207 (327)
T TIGR01650 139 CFDEYDAGRP-----------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQ 207 (327)
T ss_pred EechhhccCH-----------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHH
Confidence 9999998632 122334444431 111 11234688999999865 368899
Q ss_pred cCCCCcccccccCCCCHHHHHHHHHHHhcc
Q 003525 645 LRPGRLDQLIYIPLPDEASRLQIFKACLRK 674 (813)
Q Consensus 645 lr~gRf~~~i~~~~p~~~~r~~Il~~~l~~ 674 (813)
+. ||-.++.+++|+.++-.+|+......
T Consensus 208 lD--RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 208 MD--RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred Hh--heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 98 99888899999999999999876543
No 200
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=3.8e-10 Score=131.10 Aligned_cols=180 Identities=18% Similarity=0.270 Sum_probs=125.0
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe----------
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~---------- 276 (813)
.++.+.+|++|.|.+..++.|+..+..- .-+..+||+||+|+||||+|+++|+.+++.
T Consensus 8 ~KyRP~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~ 75 (647)
T PRK07994 8 RKWRPQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGE 75 (647)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCC
Confidence 3567789999999999999998887630 123458999999999999999999988652
Q ss_pred --------------EEEEechhhhhhhcchhHHHHHHHHHHHH----hcCCcEEEeccchhccCCCCCCchhHHHHHHHH
Q 003525 277 --------------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (813)
Q Consensus 277 --------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (813)
++.+++.+ ...-..++.+.+.+. .....|+||||+|.+.. ...+.
T Consensus 76 C~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-----------~a~NA 138 (647)
T PRK07994 76 CDNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNA 138 (647)
T ss_pred CHHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH-----------HHHHH
Confidence 12232211 012234555554432 23456999999998842 24567
Q ss_pred HHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCCC
Q 003525 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 417 (813)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 417 (813)
|+..|+... ..+.+|.+|+.+..|.+.+++ |+ ..+.|..++.++-...|+..+....+. ++..+..++....|-
T Consensus 139 LLKtLEEPp--~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs 213 (647)
T PRK07994 139 LLKTLEEPP--EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGS 213 (647)
T ss_pred HHHHHHcCC--CCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 888887543 356677778888999999887 64 678999999998888887766433332 334566777777765
Q ss_pred chH
Q 003525 418 VGS 420 (813)
Q Consensus 418 ~~~ 420 (813)
.+.
T Consensus 214 ~R~ 216 (647)
T PRK07994 214 MRD 216 (647)
T ss_pred HHH
Confidence 443
No 201
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=9.2e-11 Score=136.22 Aligned_cols=190 Identities=21% Similarity=0.237 Sum_probs=129.7
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEe-c-------
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVK-G------- 555 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~-~------- 555 (813)
..+|++++|++.+++.|...+.. + +.+..+||+||+|+|||++|+++|..+........ +
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~-----------g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFET-----------G-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 45799999999999998876543 1 34567999999999999999999998754321111 0
Q ss_pred -------------cchhhhcc--cccHHHHHHHHHHHHhC----CCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHH
Q 003525 556 -------------PELLTMWF--GESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLL 616 (813)
Q Consensus 556 -------------~~l~~~~v--g~se~~i~~vF~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL 616 (813)
++++.... .-.-..|+++.+.++.. ...|+||||+|.+. ....+.||
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls--------------~~a~naLL 153 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS--------------TAAFNALL 153 (598)
T ss_pred ccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC--------------HHHHHHHH
Confidence 11110000 01134577777766543 35799999999973 23578889
Q ss_pred HHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHcCCCCH
Q 003525 617 TEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGFSG 695 (813)
Q Consensus 617 ~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~~~g~sg 695 (813)
..|+... ..+++|++|+.++.+-+.+++ |+. ++.|..|+.++...+++..+++.++.-+ ..+..|++.+.| +.
T Consensus 154 KtLEePp--~~~~fIl~tte~~kll~tI~S--Rcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dl 227 (598)
T PRK09111 154 KTLEEPP--PHVKFIFATTEIRKVPVTVLS--RCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SV 227 (598)
T ss_pred HHHHhCC--CCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 8888643 356666667777777777776 874 7999999999999999998877665433 234555665544 66
Q ss_pred HHHHHHHHHH
Q 003525 696 ADITEVCQRA 705 (813)
Q Consensus 696 ~di~~l~~~a 705 (813)
+++.+++..+
T Consensus 228 r~al~~Ldkl 237 (598)
T PRK09111 228 RDGLSLLDQA 237 (598)
T ss_pred HHHHHHHHHH
Confidence 6666655544
No 202
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=3.4e-10 Score=125.45 Aligned_cols=186 Identities=19% Similarity=0.260 Sum_probs=123.6
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe----------
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~---------- 276 (813)
+++.+.+|+++.|+++.++.++..+... ..+..+||+||+|+||||+|+++|+.+...
T Consensus 8 ~kyrP~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~ 75 (363)
T PRK14961 8 RKWRPQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRK 75 (363)
T ss_pred HHhCCCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 4567889999999999999998887531 224568999999999999999999988532
Q ss_pred --------------EEEEechhhhhhhcchhHHHHHHHHHHHHh----cCCcEEEeccchhccCCCCCCchhHHHHHHHH
Q 003525 277 --------------FFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (813)
Q Consensus 277 --------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (813)
++.+++.. ...-..++.+.+.+.. ....++||||+|.+.. ...+.
T Consensus 76 c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~-----------~a~na 138 (363)
T PRK14961 76 CIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR-----------HSFNA 138 (363)
T ss_pred CHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH-----------HHHHH
Confidence 11222110 0122345555555432 2345999999998732 23355
Q ss_pred HHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcc-ccchhhHHHHhhcCCC
Q 003525 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTHGY 417 (813)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l-~~~~~l~~la~~t~g~ 417 (813)
|+..++... ..+.+|.+|+.++.+.+.+++ |+ ..+++++++.++..++++..++.... .++..+..++..+.|-
T Consensus 139 LLk~lEe~~--~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~ 213 (363)
T PRK14961 139 LLKTLEEPP--QHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGS 213 (363)
T ss_pred HHHHHhcCC--CCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 777776543 345566667778888888876 65 56899999999999888876655432 2334566777776653
Q ss_pred chHHHHHHHH
Q 003525 418 VGSDLAALCT 427 (813)
Q Consensus 418 ~~~dl~~l~~ 427 (813)
..++..++.
T Consensus 214 -~R~al~~l~ 222 (363)
T PRK14961 214 -MRDALNLLE 222 (363)
T ss_pred -HHHHHHHHH
Confidence 333334443
No 203
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=2.1e-10 Score=134.51 Aligned_cols=185 Identities=21% Similarity=0.293 Sum_probs=126.0
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCe--------------
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 549 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~-------------- 549 (813)
..+|+++.|++.+++.|...+... ..+..+||+||+|+|||++|+++|..+...
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 567999999999999887765421 234458999999999999999999887421
Q ss_pred -----------EEEEeccchhhhcccccHHHHHHHHHHHHh----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHH
Q 003525 550 -----------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 614 (813)
Q Consensus 550 -----------~i~v~~~~l~~~~vg~se~~i~~vF~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~ 614 (813)
++.+++.. ...-..++++.+.+.. ....|+||||+|.+. ...++.
T Consensus 80 c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~--------------~~a~na 139 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS--------------TAAFNA 139 (585)
T ss_pred HHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC--------------HHHHHH
Confidence 12222211 0112344554443332 335699999999873 235678
Q ss_pred HHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHcCCC
Q 003525 615 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGF 693 (813)
Q Consensus 615 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~~~g~ 693 (813)
||..|+... ..+++|.+|+.++.+.+.+.+ |+. ++.|+.++..+...+++..+.+.++.-+ ..+..|++.+.|
T Consensus 140 LLk~LEepp--~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G- 213 (585)
T PRK14950 140 LLKTLEEPP--PHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG- 213 (585)
T ss_pred HHHHHhcCC--CCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 888888653 345666666667777777776 775 6899999999999999988877665422 236677776655
Q ss_pred CHHHHHHHHHHHH
Q 003525 694 SGADITEVCQRAC 706 (813)
Q Consensus 694 sg~di~~l~~~a~ 706 (813)
+.+++.+.++...
T Consensus 214 dlr~al~~LekL~ 226 (585)
T PRK14950 214 SMRDAENLLQQLA 226 (585)
T ss_pred CHHHHHHHHHHHH
Confidence 7777776666543
No 204
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.9e-10 Score=124.81 Aligned_cols=178 Identities=24% Similarity=0.370 Sum_probs=120.1
Q ss_pred CCceeeeecCCCCChhHHHHHHHHHhCCe-----EEEEeccchhhhc---------------ccccH-HHHHHHHHHHHh
Q 003525 521 PSKGVLFYGPPGCGKTLLAKAIANECQAN-----FISVKGPELLTMW---------------FGESE-ANVREIFDKARQ 579 (813)
Q Consensus 521 ~~~gilL~GppGtGKT~la~ala~~~~~~-----~i~v~~~~l~~~~---------------vg~se-~~i~~vF~~a~~ 579 (813)
.|.++++|||||||||.+++.++.++... +++|++..+-+.| .|-+. +....+++....
T Consensus 41 ~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~ 120 (366)
T COG1474 41 RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSK 120 (366)
T ss_pred CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHh
Confidence 34459999999999999999999998543 7899987664332 12222 223334444333
Q ss_pred -CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCC---CCCccccCCCCcc-ccc
Q 003525 580 -SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD---IIDPALLRPGRLD-QLI 654 (813)
Q Consensus 580 -~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~---~ld~allr~gRf~-~~i 654 (813)
...-|+++||+|.|..+.+ .++-.|+...+.. ..++.+|+.+|..+ .+||.+.+ ||. ..|
T Consensus 121 ~~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I 185 (366)
T COG1474 121 KGKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEI 185 (366)
T ss_pred cCCeEEEEEcchhhhccccc-----------hHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhh--ccCccee
Confidence 3456999999999976421 4666666665544 56789999999874 68888887 553 558
Q ss_pred ccCCCCHHHHHHHHHHHhccCC---CCCcccHHHHHHHcCCC--CHHHHHHHHHHHHHHHHHHH
Q 003525 655 YIPLPDEASRLQIFKACLRKSP---ISPDVDLSALARYTHGF--SGADITEVCQRACKYAIREN 713 (813)
Q Consensus 655 ~~~~p~~~~r~~Il~~~l~~~~---~~~~~d~~~la~~~~g~--sg~di~~l~~~a~~~a~~~~ 713 (813)
.||+++.++...|++...+..- .-.+.-++.+|...... +.+--..+|+.|+..|-++.
T Consensus 186 ~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~ 249 (366)
T COG1474 186 VFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREG 249 (366)
T ss_pred eeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999998886431 11222233344333222 34444568899999888764
No 205
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.21 E-value=9e-11 Score=127.82 Aligned_cols=176 Identities=28% Similarity=0.446 Sum_probs=120.3
Q ss_pred cccChHHHHHHHHHHHHcccCChhhhhhhC-CCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhh-hhcc-h
Q 003525 216 DVGGVRKQMAQIRELVELPLRHPQLFKSIG-VKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS-KLAG-E 292 (813)
Q Consensus 216 ~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~-i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~-~~~g-~ 292 (813)
.|.|+++.++.+..++...+++..+...+. -.++.+|||+||||||||+++++||+.++.+++.+++..+.. .|.| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 489999999998766654333322221111 234689999999999999999999999999999999876652 4555 3
Q ss_pred hHHHHHHHHHHH--------------------------------------------------------------------
Q 003525 293 SESNLRKAFEEA-------------------------------------------------------------------- 304 (813)
Q Consensus 293 ~~~~l~~vf~~a-------------------------------------------------------------------- 304 (813)
.+..++.+|+.+
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 444444444433
Q ss_pred -----------------------------------------------------------------------HhcCCcEEE
Q 003525 305 -----------------------------------------------------------------------EKNAPSIIF 313 (813)
Q Consensus 305 -----------------------------------------------------------------------~~~~p~il~ 313 (813)
...+..|+|
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 012446999
Q ss_pred eccchhccCCCCCCchhH-HHHHHHHHHHHhhccc--------cCCcEEEEEec----CCCCCCCHHhhccCCcceEEEc
Q 003525 314 IDELDSIAPKREKTHGEV-ERRIVSQLLTLMDGLK--------SRAHVIVMGAT----NRPNSIDPALRRFGRFDREIDI 380 (813)
Q Consensus 314 iDEid~l~~~~~~~~~~~-~~~v~~~Ll~~ld~~~--------~~~~vivi~at----n~~~~ld~~l~r~~Rf~~~i~i 380 (813)
|||||.++.+......++ ..-+...|+.+++|-. ...++++|++- ..|.++-|.+. |||...+.+
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L 330 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVEL 330 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEEC
Confidence 999999997653222222 2335677888887632 22456666432 24566667776 599999999
Q ss_pred CCCCHHHHHHHHH
Q 003525 381 GVPDEVGRLEILR 393 (813)
Q Consensus 381 ~~p~~~~R~~Il~ 393 (813)
..++.++..+||.
T Consensus 331 ~~L~~edL~rILt 343 (441)
T TIGR00390 331 QALTTDDFERILT 343 (441)
T ss_pred CCCCHHHHHHHhc
Confidence 9999999999984
No 206
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.21 E-value=2.3e-10 Score=124.84 Aligned_cols=159 Identities=25% Similarity=0.397 Sum_probs=111.4
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhh
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM 286 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~ 286 (813)
+++.+.+++++.|.++.++.++.++.. + ..+..++|+||||+|||++++++++.++..++.+++.+
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-- 78 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-- 78 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--
Confidence 466788999999999999999888752 1 22455677999999999999999999988888898866
Q ss_pred hhhcchhHHHHHHHHHHH-HhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCCC
Q 003525 287 SKLAGESESNLRKAFEEA-EKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID 365 (813)
Q Consensus 287 ~~~~g~~~~~l~~vf~~a-~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld 365 (813)
.. .......+....... ....+.+++|||+|.+... .....|...++.... .+.+|.++|.+..+.
T Consensus 79 ~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~----------~~~~~L~~~le~~~~--~~~~Ilt~n~~~~l~ 145 (316)
T PHA02544 79 CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA----------DAQRHLRSFMEAYSK--NCSFIITANNKNGII 145 (316)
T ss_pred cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH----------HHHHHHHHHHHhcCC--CceEEEEcCChhhch
Confidence 11 111112222221111 1134679999999877221 122445555665433 456677889888999
Q ss_pred HHhhccCCcceEEEcCCCCHHHHHHHHHHH
Q 003525 366 PALRRFGRFDREIDIGVPDEVGRLEILRIH 395 (813)
Q Consensus 366 ~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~ 395 (813)
+++++ |+ ..+.++.|+.+++..++...
T Consensus 146 ~~l~s--R~-~~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 146 EPLRS--RC-RVIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred HHHHh--hc-eEEEeCCCCHHHHHHHHHHH
Confidence 99998 77 46889999999998877654
No 207
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.21 E-value=6.6e-10 Score=123.81 Aligned_cols=218 Identities=26% Similarity=0.315 Sum_probs=132.8
Q ss_pred cccChHHHHHHHHHHHHcccCChhhhhh--hCC-CCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhh-hhcc
Q 003525 216 DVGGVRKQMAQIRELVELPLRHPQLFKS--IGV-KPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS-KLAG 291 (813)
Q Consensus 216 ~i~G~~~~~~~i~~~v~~~l~~~~~~~~--l~i-~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~-~~~g 291 (813)
.|.|+++.++.+...+...+.+-..... -.+ .+..++||+||||||||++|++||..++.+++.+++..+.. .|.|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 3899999999886665432211100000 011 24578999999999999999999999999999999987653 4666
Q ss_pred hhH-HHHHHHHHH----HHhcCCcEEEeccchhccCCCCCCc---hhHHHHHHHHHHHHhhccc-----------cCCcE
Q 003525 292 ESE-SNLRKAFEE----AEKNAPSIIFIDELDSIAPKREKTH---GEVERRIVSQLLTLMDGLK-----------SRAHV 352 (813)
Q Consensus 292 ~~~-~~l~~vf~~----a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~-----------~~~~v 352 (813)
... ..+..+++. .....++||||||||.+..+...+. +.....+...|+.+|++-. .....
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~ 231 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEF 231 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCe
Confidence 543 334444432 2234678999999999987633221 1111346678888887531 01134
Q ss_pred EEEEecCCCC-------C---------------------------------------------CCHHhhccCCcceEEEc
Q 003525 353 IVMGATNRPN-------S---------------------------------------------IDPALRRFGRFDREIDI 380 (813)
Q Consensus 353 ivi~atn~~~-------~---------------------------------------------ld~~l~r~~Rf~~~i~i 380 (813)
++|.|+|-.. . +.|.+ .+|++..+.+
T Consensus 232 ~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEf--lgRld~iv~f 309 (412)
T PRK05342 232 IQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEF--IGRLPVVATL 309 (412)
T ss_pred EEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHH--hCCCCeeeec
Confidence 4555554410 0 01111 2688888999
Q ss_pred CCCCHHHHHHHHHH----Hhc---------CCccc-cchhhHHHHhh--cCCCchHHHHHHHHHHHHHHHH
Q 003525 381 GVPDEVGRLEILRI----HTK---------NMKLA-EDVDLERVAKD--THGYVGSDLAALCTEAALQCIR 435 (813)
Q Consensus 381 ~~p~~~~R~~Il~~----~~~---------~~~l~-~~~~l~~la~~--t~g~~~~dl~~l~~~a~~~~~~ 435 (813)
...+.+...+|+.. ..+ ++.+. ++.-+.+++.. ...|-.+.+..++.......+.
T Consensus 310 ~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~ 380 (412)
T PRK05342 310 EELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMF 380 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHH
Confidence 99999999888862 221 12221 23345666664 4456666677666665554443
No 208
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.20 E-value=8.1e-10 Score=114.39 Aligned_cols=180 Identities=18% Similarity=0.270 Sum_probs=110.7
Q ss_pred cChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHh---CCeEEEEechhhhhhhcchhH
Q 003525 218 GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGESE 294 (813)
Q Consensus 218 ~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l---~~~~v~v~~~~l~~~~~g~~~ 294 (813)
++.+..++.+++++.. ..+.+++|+||+|||||+++++++... +..++++++.++....
T Consensus 20 ~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~----- 81 (226)
T TIGR03420 20 GGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD----- 81 (226)
T ss_pred CCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH-----
Confidence 4567777888776531 346789999999999999999999876 4567889987775322
Q ss_pred HHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCCC---HHhhcc
Q 003525 295 SNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID---PALRRF 371 (813)
Q Consensus 295 ~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld---~~l~r~ 371 (813)
..++... ....+|+|||++.+..... ....|..+++........+++.++..+..++ +.+.+.
T Consensus 82 ---~~~~~~~--~~~~lLvIDdi~~l~~~~~---------~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 82 ---PEVLEGL--EQADLVCLDDVEAIAGQPE---------WQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred ---HHHHhhc--ccCCEEEEeChhhhcCChH---------HHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 1222222 2346999999998754310 1233444444433333344444444443332 666652
Q ss_pred CCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCCCchHHHHHHHHHHH
Q 003525 372 GRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYVGSDLAALCTEAA 430 (813)
Q Consensus 372 ~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~ 430 (813)
..+...+.++.|+.+++..+++.......+. .+..+..++... +-+..++..++..+.
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~-~gn~r~L~~~l~~~~ 206 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHG-SRDMGSLMALLDALD 206 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-cCCHHHHHHHHHHHH
Confidence 2235789999999999999998765433322 233456666643 334455666655544
No 209
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=6.6e-10 Score=126.55 Aligned_cols=194 Identities=21% Similarity=0.255 Sum_probs=130.9
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEE--------
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFF-------- 278 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v-------- 278 (813)
.++.+-+|+++.|++..++.++..+.. -..+..+||+||+||||||+|+++|+.+++...
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~ 80 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIK 80 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcC
Confidence 356788999999999999998876653 123568999999999999999999999864211
Q ss_pred ----EEechhhhhh----------hcchhHHHHHHHHHHHHhc----CCcEEEeccchhccCCCCCCchhHHHHHHHHHH
Q 003525 279 ----LINGPEIMSK----------LAGESESNLRKAFEEAEKN----APSIIFIDELDSIAPKREKTHGEVERRIVSQLL 340 (813)
Q Consensus 279 ----~v~~~~l~~~----------~~g~~~~~l~~vf~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll 340 (813)
.-+|..+... ........++.+++.+... ...++||||+|.+.. ...+.|+
T Consensus 81 ~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-----------~a~naLL 149 (507)
T PRK06645 81 TCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-----------GAFNALL 149 (507)
T ss_pred CCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-----------HHHHHHH
Confidence 1111111110 0112345567777766432 346999999998842 2345677
Q ss_pred HHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCCCch
Q 003525 341 TLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYVG 419 (813)
Q Consensus 341 ~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~ 419 (813)
..++.. ...+++|.+|+.++.+.+.+++ |. ..+++..++.++...+++..++...+. ++..+..++..+.| ..
T Consensus 150 k~LEep--p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-sl 223 (507)
T PRK06645 150 KTLEEP--PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SA 223 (507)
T ss_pred HHHhhc--CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 777643 3456666677888889888887 55 468899999999999998777654432 33456778887776 44
Q ss_pred HHHHHHHHHH
Q 003525 420 SDLAALCTEA 429 (813)
Q Consensus 420 ~dl~~l~~~a 429 (813)
.++..++..+
T Consensus 224 R~al~~Ldka 233 (507)
T PRK06645 224 RDAVSILDQA 233 (507)
T ss_pred HHHHHHHHHH
Confidence 4555555444
No 210
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.20 E-value=1.8e-10 Score=125.89 Aligned_cols=184 Identities=21% Similarity=0.272 Sum_probs=119.0
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhC-----CeEEEEeccch
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPEL 558 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~-----~~~i~v~~~~l 558 (813)
+.+|+++.|.+++++.|...+... ...+++|+||||||||++++++++.+. .+++.++.++-
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~ 79 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDE 79 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccc
Confidence 357889999999988887765421 123589999999999999999999873 23455544332
Q ss_pred hhhcccccHHHHHHHHHH-HHh-----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEe
Q 003525 559 LTMWFGESEANVREIFDK-ARQ-----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIG 632 (813)
Q Consensus 559 ~~~~vg~se~~i~~vF~~-a~~-----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~ 632 (813)
. ....++..+.. ++. ..+.+++|||+|.+.. ...+.|+..++.... ...+|.
T Consensus 80 ~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~--------------~~~~~L~~~le~~~~--~~~lIl 137 (319)
T PRK00440 80 R------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS--------------DAQQALRRTMEMYSQ--NTRFIL 137 (319)
T ss_pred c------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH--------------HHHHHHHHHHhcCCC--CCeEEE
Confidence 1 11122222222 221 2346999999998732 224566666765443 344555
Q ss_pred ccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 003525 633 ATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEVCQRAC 706 (813)
Q Consensus 633 aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~d~~~la~~~~g~sg~di~~l~~~a~ 706 (813)
++|.+..+.+++.+ |+. ++.|++++.++...+++..+++.++. .+..+..+++.+.| +.+.+.+.++.++
T Consensus 138 ~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~ 208 (319)
T PRK00440 138 SCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAA 208 (319)
T ss_pred EeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 66777777777776 775 68999999999999999999776653 23346777776554 4444444444433
No 211
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.19 E-value=8.4e-11 Score=127.16 Aligned_cols=161 Identities=19% Similarity=0.344 Sum_probs=104.1
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhC-------C--eEEEE
Q 003525 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-------A--NFISV 553 (813)
Q Consensus 483 ~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~-------~--~~i~v 553 (813)
....|.+|.|++++++.|.-.... ....++||+|+||+|||++|++++..+. . ++..+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 356789999999998877543211 1124699999999999999999999982 2 22211
Q ss_pred ec---------cchhh---------------hccccc--HHHH---HHHHHHH--HhCCCeEEEEecchhhhhccCCCCC
Q 003525 554 KG---------PELLT---------------MWFGES--EANV---REIFDKA--RQSAPCVLFFDELDSIATQRGSSTG 602 (813)
Q Consensus 554 ~~---------~~l~~---------------~~vg~s--e~~i---~~vF~~a--~~~~p~il~iDEid~l~~~r~~~~~ 602 (813)
.+ .++.. ..+|.. ++.+ ..+|+.- ......+||+|||+.+-
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~-------- 141 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE-------- 141 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC--------
Confidence 11 01100 011210 0000 0112210 00112499999999973
Q ss_pred CCCchHHHHHHHHHHHHhccC-----------CCCcEEEEeccCCCC-CCCccccCCCCcccccccCCCCH-HHHHHHHH
Q 003525 603 DAGGAADRVLNQLLTEMDGMN-----------AKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLPDE-ASRLQIFK 669 (813)
Q Consensus 603 ~~~~~~~~vl~~lL~~ld~~~-----------~~~~v~vi~aTn~~~-~ld~allr~gRf~~~i~~~~p~~-~~r~~Il~ 669 (813)
..+++.|+..|+... ...++++++|+|..+ .+.++++. ||...+.+++|.. ++|.+|++
T Consensus 142 ------~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~ 213 (334)
T PRK13407 142 ------DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIR 213 (334)
T ss_pred ------HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHH
Confidence 457788888876432 235789999999755 58899998 9999999998876 99999998
Q ss_pred HHh
Q 003525 670 ACL 672 (813)
Q Consensus 670 ~~l 672 (813)
...
T Consensus 214 ~~~ 216 (334)
T PRK13407 214 RRD 216 (334)
T ss_pred Hhh
Confidence 754
No 212
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.19 E-value=4.3e-10 Score=117.29 Aligned_cols=82 Identities=26% Similarity=0.170 Sum_probs=58.7
Q ss_pred EEEeccCC------------CCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHcCCCCH
Q 003525 629 FIIGATNR------------PDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARYTHGFSG 695 (813)
Q Consensus 629 ~vi~aTn~------------~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-d~~~la~~~~g~sg 695 (813)
+||+|||| |.-|+..||. |+ .+|...+++.++.+.|+++.++...+..+. -++.|+..-..-|=
T Consensus 322 Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSL 398 (450)
T COG1224 322 IIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSL 398 (450)
T ss_pred EEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhH
Confidence 78888987 4446677776 76 478888999999999999999877655333 36677776655565
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003525 696 ADITEVCQRACKYAIREN 713 (813)
Q Consensus 696 ~di~~l~~~a~~~a~~~~ 713 (813)
+---+|+.-|...|.++.
T Consensus 399 RYa~qLL~pa~iiA~~rg 416 (450)
T COG1224 399 RYAVQLLTPASIIAKRRG 416 (450)
T ss_pred HHHHHhccHHHHHHHHhC
Confidence 555666666666666553
No 213
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.19 E-value=9.1e-10 Score=121.28 Aligned_cols=181 Identities=22% Similarity=0.316 Sum_probs=117.6
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhC-----CeEEEEe
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG-----AFFFLIN 281 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~-----~~~v~v~ 281 (813)
+++.+.+|+++.|.+..++.+.+++.. ....+++|+||||||||++|+++++.+. ..++.++
T Consensus 7 ~ky~P~~~~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~ 73 (337)
T PRK12402 7 EKYRPALLEDILGQDEVVERLSRAVDS-------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN 73 (337)
T ss_pred HhhCCCcHHHhcCCHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec
Confidence 356677899999999999999887753 1123699999999999999999999874 2457788
Q ss_pred chhhhhhhc-------------ch-------hHHHHHHHHHHHHh-----cCCcEEEeccchhccCCCCCCchhHHHHHH
Q 003525 282 GPEIMSKLA-------------GE-------SESNLRKAFEEAEK-----NAPSIIFIDELDSIAPKREKTHGEVERRIV 336 (813)
Q Consensus 282 ~~~l~~~~~-------------g~-------~~~~l~~vf~~a~~-----~~p~il~iDEid~l~~~~~~~~~~~~~~v~ 336 (813)
+.++..... +. ....++.+.+.... ..+.++++||++.+... ..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~-----------~~ 142 (337)
T PRK12402 74 VADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED-----------AQ 142 (337)
T ss_pred hhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH-----------HH
Confidence 766532210 00 11223333333322 22459999999977421 23
Q ss_pred HHHHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcC
Q 003525 337 SQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTH 415 (813)
Q Consensus 337 ~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~ 415 (813)
..|...++..... ..+|.+++.+..+.+.+++ |+ ..+.+.+|+.++...+++..+....+. ++..+..++..+.
T Consensus 143 ~~L~~~le~~~~~--~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~ 217 (337)
T PRK12402 143 QALRRIMEQYSRT--CRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAG 217 (337)
T ss_pred HHHHHHHHhccCC--CeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 4566666654433 2334455556667777776 54 568899999999999998776544332 3445677777664
Q ss_pred C
Q 003525 416 G 416 (813)
Q Consensus 416 g 416 (813)
|
T Consensus 218 g 218 (337)
T PRK12402 218 G 218 (337)
T ss_pred C
Confidence 3
No 214
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.19 E-value=9.4e-11 Score=127.75 Aligned_cols=176 Identities=27% Similarity=0.424 Sum_probs=120.9
Q ss_pred cccChHHHHHHHHHHHHcccCChhhhhhhCC-CCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhh-hhcc-h
Q 003525 216 DVGGVRKQMAQIRELVELPLRHPQLFKSIGV-KPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS-KLAG-E 292 (813)
Q Consensus 216 ~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i-~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~-~~~g-~ 292 (813)
.|.|+++.++.+..++...+++..+...+.. ..+.++||+||||||||++|++||+.++.+++.+++..+.. .|.| +
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 3899999999997777542222222111111 13588999999999999999999999999999999877664 4655 3
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 003525 293 SESNLRKAFEEAE------------------------------------------------------------------- 305 (813)
Q Consensus 293 ~~~~l~~vf~~a~------------------------------------------------------------------- 305 (813)
.+..++.+|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 3444444444440
Q ss_pred -----------------------------------------------------------------------hcCCcEEEe
Q 003525 306 -----------------------------------------------------------------------KNAPSIIFI 314 (813)
Q Consensus 306 -----------------------------------------------------------------------~~~p~il~i 314 (813)
...-.|+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 013469999
Q ss_pred ccchhccCCCCCCchhHH-HHHHHHHHHHhhccc--------cCCcEEEEEec----CCCCCCCHHhhccCCcceEEEcC
Q 003525 315 DELDSIAPKREKTHGEVE-RRIVSQLLTLMDGLK--------SRAHVIVMGAT----NRPNSIDPALRRFGRFDREIDIG 381 (813)
Q Consensus 315 DEid~l~~~~~~~~~~~~-~~v~~~Ll~~ld~~~--------~~~~vivi~at----n~~~~ld~~l~r~~Rf~~~i~i~ 381 (813)
||||.++.+.+....++. .-+...|+.+++|-. ...++++|++- ..|.++-|.|.. ||...+.+.
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~ 333 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVELD 333 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECC
Confidence 999999977542222222 346677888887732 22456666422 345667777774 999999999
Q ss_pred CCCHHHHHHHHH
Q 003525 382 VPDEVGRLEILR 393 (813)
Q Consensus 382 ~p~~~~R~~Il~ 393 (813)
.++.++..+||.
T Consensus 334 ~L~~~dL~~ILt 345 (443)
T PRK05201 334 ALTEEDFVRILT 345 (443)
T ss_pred CCCHHHHHHHhc
Confidence 999999999984
No 215
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.19 E-value=3.5e-10 Score=129.19 Aligned_cols=156 Identities=24% Similarity=0.421 Sum_probs=105.3
Q ss_pred ceEEEECCCCCchHHHHHHHHHHh-----CCeEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCC
Q 003525 250 KGILLYGPPGSGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKR 324 (813)
Q Consensus 250 ~~vLL~GppGsGKTtLar~la~~l-----~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~ 324 (813)
..++|+||+|||||+|++++++++ +..++++++.++...+..........-|..... .+++|+|||++.+..+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH
Confidence 569999999999999999999987 456788998887655443322211122322222 47799999999986442
Q ss_pred CCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCC---CCHHhhccCCcc--eEEEcCCCCHHHHHHHHHHHhcCC
Q 003525 325 EKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNS---IDPALRRFGRFD--REIDIGVPDEVGRLEILRIHTKNM 399 (813)
Q Consensus 325 ~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~---ld~~l~r~~Rf~--~~i~i~~p~~~~R~~Il~~~~~~~ 399 (813)
. ....++..++.+......+++++...|.. +++.+++ ||. ..+++..|+.+.|..|++..+...
T Consensus 228 ~---------~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~ 296 (450)
T PRK00149 228 R---------TQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEE 296 (450)
T ss_pred H---------HHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHc
Confidence 1 12344555554444444566666666654 5677776 774 578999999999999999887643
Q ss_pred --ccccchhhHHHHhhcCCCc
Q 003525 400 --KLAEDVDLERVAKDTHGYV 418 (813)
Q Consensus 400 --~l~~~~~l~~la~~t~g~~ 418 (813)
.+.+ ..++.++....|-.
T Consensus 297 ~~~l~~-e~l~~ia~~~~~~~ 316 (450)
T PRK00149 297 GIDLPD-EVLEFIAKNITSNV 316 (450)
T ss_pred CCCCCH-HHHHHHHcCcCCCH
Confidence 3433 45788887776643
No 216
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=4.7e-10 Score=128.66 Aligned_cols=188 Identities=17% Similarity=0.231 Sum_probs=125.2
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe----------
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~---------- 276 (813)
.++.+-+|+++.|.++.++.|+.++... ..+..+||+||+|+||||+|+++|+.+++.
T Consensus 8 ~kyRP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 75 (509)
T PRK14958 8 RKWRPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCND 75 (509)
T ss_pred HHHCCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCC
Confidence 4567889999999999999999888631 224468999999999999999999988642
Q ss_pred --------------EEEEechhhhhhhcchhHHHHHHHHHHHH----hcCCcEEEeccchhccCCCCCCchhHHHHHHHH
Q 003525 277 --------------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (813)
Q Consensus 277 --------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (813)
++.+++.+ ...-..++.+.+.+. .....|+||||+|.+.. ...+.
T Consensus 76 C~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~-----------~a~na 138 (509)
T PRK14958 76 CENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG-----------HSFNA 138 (509)
T ss_pred CHHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH-----------HHHHH
Confidence 23333321 112334566555443 22346999999998853 23467
Q ss_pred HHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCCC
Q 003525 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 417 (813)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 417 (813)
|+..|+.... .+.+|.+|+++..+.+.+++ |. ..+++..++..+-...++..++...+. ++..+..++....|
T Consensus 139 LLk~LEepp~--~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G- 212 (509)
T PRK14958 139 LLKTLEEPPS--HVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG- 212 (509)
T ss_pred HHHHHhccCC--CeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 7778876433 46666677888888888776 44 446788887777766666555443332 33456677777655
Q ss_pred chHHHHHHHHHH
Q 003525 418 VGSDLAALCTEA 429 (813)
Q Consensus 418 ~~~dl~~l~~~a 429 (813)
...++..++..+
T Consensus 213 slR~al~lLdq~ 224 (509)
T PRK14958 213 SVRDALSLLDQS 224 (509)
T ss_pred cHHHHHHHHHHH
Confidence 344555555444
No 217
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=7.9e-10 Score=124.92 Aligned_cols=188 Identities=21% Similarity=0.264 Sum_probs=129.0
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCC------------
Q 003525 208 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA------------ 275 (813)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~------------ 275 (813)
++.+.+|+++.|++..++.++.++.. + ..+..+||+||+|+||||+|+++|+.+++
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~-----------~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTL-----------N-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 56778999999999999999887753 1 23568999999999999999999987632
Q ss_pred ------------eEEEEechhhhhhhcchhHHHHHHHHHHHHh----cCCcEEEeccchhccCCCCCCchhHHHHHHHHH
Q 003525 276 ------------FFFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQL 339 (813)
Q Consensus 276 ------------~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 339 (813)
.++.+++.+- ..-..++.+.+.+.. ....+++|||+|.+.. ...+.|
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-----------~A~NaL 136 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-----------SAFNAL 136 (491)
T ss_pred HHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-----------HHHHHH
Confidence 2344444221 123456666666532 2346999999998842 234677
Q ss_pred HHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCCCc
Q 003525 340 LTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYV 418 (813)
Q Consensus 340 l~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 418 (813)
+..++... ..+.+|.+|+.+..+.+.+++ |+ ..+++..++.++....+...+....+. ++..+..++..+.| .
T Consensus 137 LK~LEePp--~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-s 210 (491)
T PRK14964 137 LKTLEEPA--PHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-S 210 (491)
T ss_pred HHHHhCCC--CCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 78887643 356666677888888888887 54 458899999888888887766544332 33456777777765 4
Q ss_pred hHHHHHHHHHHH
Q 003525 419 GSDLAALCTEAA 430 (813)
Q Consensus 419 ~~dl~~l~~~a~ 430 (813)
..++..++..+.
T Consensus 211 lR~alslLdqli 222 (491)
T PRK14964 211 MRNALFLLEQAA 222 (491)
T ss_pred HHHHHHHHHHHH
Confidence 444444544443
No 218
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.18 E-value=3.9e-10 Score=127.23 Aligned_cols=166 Identities=25% Similarity=0.405 Sum_probs=106.4
Q ss_pred CceEEEECCCCCchHHHHHHHHHHh-----CCeEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCC
Q 003525 249 PKGILLYGPPGSGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPK 323 (813)
Q Consensus 249 ~~~vLL~GppGsGKTtLar~la~~l-----~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~ 323 (813)
...++|+||+|+|||+|++++++++ +..++++++.++...+...........|.... ..+.+|+|||++.+..+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKY-RSVDLLLIDDIQFLAGK 214 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH-HhCCEEEEehhhhhcCC
Confidence 4569999999999999999999887 46688899887765433222111111222221 23679999999998654
Q ss_pred CCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCC---CCHHhhccCCcc--eEEEcCCCCHHHHHHHHHHHhcC
Q 003525 324 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNS---IDPALRRFGRFD--REIDIGVPDEVGRLEILRIHTKN 398 (813)
Q Consensus 324 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~---ld~~l~r~~Rf~--~~i~i~~p~~~~R~~Il~~~~~~ 398 (813)
.. ....++..++........+++++...|.. +++.+++ ||. ..++++.|+.+.|..|++..+..
T Consensus 215 ~~---------~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 215 ER---------TQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred HH---------HHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 21 12334455544433444566666655654 4566776 664 57899999999999999988765
Q ss_pred Cccc-cchhhHHHHhhcCCCchHHHHHHHH
Q 003525 399 MKLA-EDVDLERVAKDTHGYVGSDLAALCT 427 (813)
Q Consensus 399 ~~l~-~~~~l~~la~~t~g~~~~dl~~l~~ 427 (813)
..+. ++..+..++....+-. +++...+.
T Consensus 284 ~~~~l~~e~l~~ia~~~~~~~-r~l~~~l~ 312 (405)
T TIGR00362 284 EGLELPDEVLEFIAKNIRSNV-RELEGALN 312 (405)
T ss_pred cCCCCCHHHHHHHHHhcCCCH-HHHHHHHH
Confidence 4332 3445778887766543 34444433
No 219
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.17 E-value=7.2e-10 Score=128.38 Aligned_cols=180 Identities=19% Similarity=0.311 Sum_probs=116.6
Q ss_pred ccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhC----------CeEEEEechh
Q 003525 215 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG----------AFFFLINGPE 284 (813)
Q Consensus 215 ~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~----------~~~v~v~~~~ 284 (813)
+.|.|.++++++|..++.-.+. +-.++..++|+|+||||||++++.+..++. ..+++|||..
T Consensus 755 D~LPhREeEIeeLasfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 5688999999999888764222 112334457999999999999999987761 4568999954
Q ss_pred hhhh----------hc------c-hhHHHHHHHHHHHHh--cCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhc
Q 003525 285 IMSK----------LA------G-ESESNLRKAFEEAEK--NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDG 345 (813)
Q Consensus 285 l~~~----------~~------g-~~~~~l~~vf~~a~~--~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~ 345 (813)
+... .. | .....+..+|..... ....||+|||||.|..+. ..++..|+.+..
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~--------QDVLYnLFR~~~- 897 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT--------QKVLFTLFDWPT- 897 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH--------HHHHHHHHHHhh-
Confidence 3211 00 1 122345555655422 335699999999997542 233344444432
Q ss_pred cccCCcEEEEEecCC---CCCCCHHhhccCCcc-eEEEcCCCCHHHHHHHHHHHhcCC-ccccchhhHHHHhhc
Q 003525 346 LKSRAHVIVMGATNR---PNSIDPALRRFGRFD-REIDIGVPDEVGRLEILRIHTKNM-KLAEDVDLERVAKDT 414 (813)
Q Consensus 346 ~~~~~~vivi~atn~---~~~ld~~l~r~~Rf~-~~i~i~~p~~~~R~~Il~~~~~~~-~l~~~~~l~~la~~t 414 (813)
.....+++||++|. ++.+++.+++ ||. .++.|++++.+++.+||+..+... .+.++..++.+|+..
T Consensus 898 -~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkV 968 (1164)
T PTZ00112 898 -KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKV 968 (1164)
T ss_pred -ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Confidence 13457899999986 4456677776 554 347899999999999999877643 223344456666533
No 220
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.17 E-value=7.2e-10 Score=128.13 Aligned_cols=195 Identities=19% Similarity=0.229 Sum_probs=127.7
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEE--------
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFF-------- 278 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v-------- 278 (813)
.++.+.+|++|.|.++.++.|+.++... ..+..+||+||+|+||||+|++||+.+++...
T Consensus 8 rKYRP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~ 75 (709)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGV 75 (709)
T ss_pred HHhCCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcc
Confidence 3567889999999999999999887641 23567999999999999999999998754210
Q ss_pred EEechhhhhh----------hcchhHHHHHHHHHHHH----hcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhh
Q 003525 279 LINGPEIMSK----------LAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMD 344 (813)
Q Consensus 279 ~v~~~~l~~~----------~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 344 (813)
.-.|..+... ........++.++..+. .....|+||||+|.+.. ...+.|+..|+
T Consensus 76 C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~-----------~A~NALLKtLE 144 (709)
T PRK08691 76 CQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK-----------SAFNAMLKTLE 144 (709)
T ss_pred cHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH-----------HHHHHHHHHHH
Confidence 0001111000 01122345666666542 23346999999987632 23466777777
Q ss_pred ccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCCCchHHHH
Q 003525 345 GLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYVGSDLA 423 (813)
Q Consensus 345 ~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~ 423 (813)
... ..+.+|.+|+.+..+.+.+++ |+ ..+.|..++..+-...|+..++...+. ++..+..|+....|- ..++.
T Consensus 145 EPp--~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~Gs-lRdAl 218 (709)
T PRK08691 145 EPP--EHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGS-MRDAL 218 (709)
T ss_pred hCC--CCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCC-HHHHH
Confidence 543 345666677888888888775 55 457788888888888887766654432 334567777766553 44555
Q ss_pred HHHHHHH
Q 003525 424 ALCTEAA 430 (813)
Q Consensus 424 ~l~~~a~ 430 (813)
.++..+.
T Consensus 219 nLLDqai 225 (709)
T PRK08691 219 SLLDQAI 225 (709)
T ss_pred HHHHHHH
Confidence 5554443
No 221
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=8.2e-10 Score=129.28 Aligned_cols=187 Identities=19% Similarity=0.311 Sum_probs=132.2
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCC---------------
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 548 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~--------------- 548 (813)
..+|++|.|++.+++.|...+.. -..+..+|||||+|+|||++|+++|..+.+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIAT------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 46899999999999988776542 123456999999999999999999998642
Q ss_pred ----------eEEEEeccchhhhcccccHHHHHHHHHHHHhC----CCeEEEEecchhhhhccCCCCCCCCchHHHHHHH
Q 003525 549 ----------NFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 614 (813)
Q Consensus 549 ----------~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~ 614 (813)
+++.+++.+. .+...++.+.+.+... ...|++|||+|.+- ....+.
T Consensus 81 C~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls--------------~~a~na 140 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS--------------QAAFNA 140 (614)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC--------------HHHHHH
Confidence 2333333211 1234566666655433 24699999999872 235788
Q ss_pred HHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHcCCC
Q 003525 615 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARYTHGF 693 (813)
Q Consensus 615 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-d~~~la~~~~g~ 693 (813)
||..|+... ...++|++|+.+..|-+.+++ |+. ++.|.+++.++....++..+++.++.-+. .+..|++.+.|
T Consensus 141 LLK~LEepp--~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g- 214 (614)
T PRK14971 141 FLKTLEEPP--SYAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG- 214 (614)
T ss_pred HHHHHhCCC--CCeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 999998643 355666666667788888887 875 79999999999999999888877765433 36777776643
Q ss_pred CHHHHHHHHHHHHHH
Q 003525 694 SGADITEVCQRACKY 708 (813)
Q Consensus 694 sg~di~~l~~~a~~~ 708 (813)
+-+++.+++..+..+
T Consensus 215 dlr~al~~Lekl~~y 229 (614)
T PRK14971 215 GMRDALSIFDQVVSF 229 (614)
T ss_pred CHHHHHHHHHHHHHh
Confidence 666666666554433
No 222
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.17 E-value=2.3e-10 Score=108.93 Aligned_cols=122 Identities=46% Similarity=0.693 Sum_probs=84.5
Q ss_pred CCceeeeecCCCCChhHHHHHHHHHh---CCeEEEEeccchhhhcccccHHH---HHHHHHHHHhCCCeEEEEecchhhh
Q 003525 521 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEAN---VREIFDKARQSAPCVLFFDELDSIA 594 (813)
Q Consensus 521 ~~~gilL~GppGtGKT~la~ala~~~---~~~~i~v~~~~l~~~~vg~se~~---i~~vF~~a~~~~p~il~iDEid~l~ 594 (813)
...+++++||||||||++++.++..+ +.+++.+...+....+....... ....+.......+.++++||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 34579999999999999999999998 78888888877655433221111 1222334445567899999999872
Q ss_pred hccCCCCCCCCchHHHHHHHHHHHHhccCC----CCcEEEEeccCCCC--CCCccccCCCCcccccccCC
Q 003525 595 TQRGSSTGDAGGAADRVLNQLLTEMDGMNA----KKTVFIIGATNRPD--IIDPALLRPGRLDQLIYIPL 658 (813)
Q Consensus 595 ~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~----~~~v~vi~aTn~~~--~ld~allr~gRf~~~i~~~~ 658 (813)
. .....++..+..... ..++.+|++||... .+++.+.+ ||+.++++++
T Consensus 98 ~--------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~~ 151 (151)
T cd00009 98 R--------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIPL 151 (151)
T ss_pred H--------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecCC
Confidence 1 123444454544432 46788999998877 67777776 9988887764
No 223
>PRK06893 DNA replication initiation factor; Validated
Probab=99.16 E-value=5.7e-10 Score=115.62 Aligned_cols=150 Identities=14% Similarity=0.222 Sum_probs=97.3
Q ss_pred ceEEEECCCCCchHHHHHHHHHHh---CCeEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCC
Q 003525 250 KGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREK 326 (813)
Q Consensus 250 ~~vLL~GppGsGKTtLar~la~~l---~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~ 326 (813)
..++|+||||||||+|++++|+++ +....+++..... .....+++.. ....+|+|||++.+..+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~--~~~dlLilDDi~~~~~~~~- 108 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENL--EQQDLVCLDDLQAVIGNEE- 108 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhc--ccCCEEEEeChhhhcCChH-
Confidence 458999999999999999999886 3344445442211 1111223322 2457999999998864321
Q ss_pred CchhHHHHHHHHHHHHhhccccCC-cEEEEEecCCCCCCC---HHhhccCCcceEEEcCCCCHHHHHHHHHHHhc--CCc
Q 003525 327 THGEVERRIVSQLLTLMDGLKSRA-HVIVMGATNRPNSID---PALRRFGRFDREIDIGVPDEVGRLEILRIHTK--NMK 400 (813)
Q Consensus 327 ~~~~~~~~v~~~Ll~~ld~~~~~~-~vivi~atn~~~~ld---~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~--~~~ 400 (813)
....|..+++...... .+++++++..|..++ +.+++..++...+.++.|+.+.|.+|++..+. ++.
T Consensus 109 --------~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~ 180 (229)
T PRK06893 109 --------WELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIE 180 (229)
T ss_pred --------HHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 1234555555554443 355666666676554 78887556667889999999999999997664 344
Q ss_pred cccchhhHHHHhhcCCCch
Q 003525 401 LAEDVDLERVAKDTHGYVG 419 (813)
Q Consensus 401 l~~~~~l~~la~~t~g~~~ 419 (813)
+.+ ..+..++.+..|-..
T Consensus 181 l~~-~v~~~L~~~~~~d~r 198 (229)
T PRK06893 181 LSD-EVANFLLKRLDRDMH 198 (229)
T ss_pred CCH-HHHHHHHHhccCCHH
Confidence 443 356778777766443
No 224
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=1.4e-09 Score=124.51 Aligned_cols=178 Identities=21% Similarity=0.284 Sum_probs=122.0
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe----------
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~---------- 276 (813)
+++.+.+|+++.|+++.++.|+.++... ..+..+||+|||||||||+|+++|+.+...
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C 73 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC 73 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 4567889999999999999998887641 234557999999999999999999987531
Q ss_pred -------------EEEEechhhhhhhcchhHHHHHHHHHHHH----hcCCcEEEeccchhccCCCCCCchhHHHHHHHHH
Q 003525 277 -------------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQL 339 (813)
Q Consensus 277 -------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 339 (813)
++.+++.. ......++.+...+. ...+.++||||+|.+. ....+.|
T Consensus 74 ~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-----------~~a~naL 136 (504)
T PRK14963 74 ESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-----------KSAFNAL 136 (504)
T ss_pred hhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC-----------HHHHHHH
Confidence 23333321 112234455444332 2345799999998663 2234566
Q ss_pred HHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCCCc
Q 003525 340 LTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYV 418 (813)
Q Consensus 340 l~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 418 (813)
+..++... ..+++|.+++.+..+.+.+++ |. ..+.+..|+..+....++..++...+. ++..+..++..+.|-.
T Consensus 137 Lk~LEep~--~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~Gdl 211 (504)
T PRK14963 137 LKTLEEPP--EHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAM 211 (504)
T ss_pred HHHHHhCC--CCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 66666432 356666678888899998887 54 468999999999888888766544432 3345677777777644
No 225
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.15 E-value=4.4e-10 Score=127.24 Aligned_cols=156 Identities=22% Similarity=0.363 Sum_probs=102.1
Q ss_pred ceEEEECCCCCchHHHHHHHHHHh-----CCeEEEEechhhhhhhcchhH-HHHHHHHHHHHhcCCcEEEeccchhccCC
Q 003525 250 KGILLYGPPGSGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESE-SNLRKAFEEAEKNAPSIIFIDELDSIAPK 323 (813)
Q Consensus 250 ~~vLL~GppGsGKTtLar~la~~l-----~~~~v~v~~~~l~~~~~g~~~-~~l~~vf~~a~~~~p~il~iDEid~l~~~ 323 (813)
..++||||+|||||+|++++++.+ +..++++++.++......... ..+.. |.......+.+|+|||++.+...
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 469999999999999999999986 346788888877654432211 11112 22222335789999999988643
Q ss_pred CCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCC---CHHhhccCCc--ceEEEcCCCCHHHHHHHHHHHhcC
Q 003525 324 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI---DPALRRFGRF--DREIDIGVPDEVGRLEILRIHTKN 398 (813)
Q Consensus 324 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~l---d~~l~r~~Rf--~~~i~i~~p~~~~R~~Il~~~~~~ 398 (813)
.. ....++..++.+......+++++.+.|..+ .+.+++ || ...+.+.+|+.+.|..|++..+..
T Consensus 210 ~~---------~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~ 278 (440)
T PRK14088 210 TG---------VQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEI 278 (440)
T ss_pred HH---------HHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHh
Confidence 21 112344444444444455666666676654 445555 55 457789999999999999987653
Q ss_pred --CccccchhhHHHHhhcCCCc
Q 003525 399 --MKLAEDVDLERVAKDTHGYV 418 (813)
Q Consensus 399 --~~l~~~~~l~~la~~t~g~~ 418 (813)
+.+.+ ..+..++....+-.
T Consensus 279 ~~~~l~~-ev~~~Ia~~~~~~~ 299 (440)
T PRK14088 279 EHGELPE-EVLNFVAENVDDNL 299 (440)
T ss_pred cCCCCCH-HHHHHHHhccccCH
Confidence 44443 34778887776643
No 226
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=1.5e-09 Score=125.51 Aligned_cols=187 Identities=17% Similarity=0.239 Sum_probs=123.0
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe----------
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~---------- 276 (813)
.++.+.+|++|.|.++.++.|+.++... ..+..+||+||+||||||+|+++|+.+.+.
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 72 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGV 72 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccc
Confidence 3567889999999999999999888641 224458999999999999999999987631
Q ss_pred ----------------EEEEechhhhhhhcchhHHHHHHHHHHHH----hcCCcEEEeccchhccCCCCCCchhHHHHHH
Q 003525 277 ----------------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIV 336 (813)
Q Consensus 277 ----------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~ 336 (813)
++.+++... ..-..++.+.+.+. .....|+||||+|.+.. ...
T Consensus 73 C~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~-----------~A~ 135 (584)
T PRK14952 73 CESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT-----------AGF 135 (584)
T ss_pred cHHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH-----------HHH
Confidence 122222110 11233444443332 23346999999998842 245
Q ss_pred HHHHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcC
Q 003525 337 SQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTH 415 (813)
Q Consensus 337 ~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~ 415 (813)
+.|+..|+... ..+++|.+|+.++.+.+.+++ | ...++|..++..+..+.+...++...+. ++..+..++....
T Consensus 136 NALLK~LEEpp--~~~~fIL~tte~~kll~TI~S--R-c~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~ 210 (584)
T PRK14952 136 NALLKIVEEPP--EHLIFIFATTEPEKVLPTIRS--R-THHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGG 210 (584)
T ss_pred HHHHHHHhcCC--CCeEEEEEeCChHhhHHHHHH--h-ceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 67788887543 366777777888899999887 5 3568899998888887887766554432 2334555555544
Q ss_pred CCchHHHHHHHHH
Q 003525 416 GYVGSDLAALCTE 428 (813)
Q Consensus 416 g~~~~dl~~l~~~ 428 (813)
| ...++..++..
T Consensus 211 G-dlR~aln~Ldq 222 (584)
T PRK14952 211 G-SPRDTLSVLDQ 222 (584)
T ss_pred C-CHHHHHHHHHH
Confidence 4 33344444443
No 227
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.15 E-value=1.2e-09 Score=131.07 Aligned_cols=176 Identities=20% Similarity=0.233 Sum_probs=119.6
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe----------
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~---------- 276 (813)
.++.+.+|++|.|.+..++.|+.++... ..+..+||+||+||||||++++||+.+.+.
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~ 74 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE 74 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc
Confidence 4577889999999999999998887631 223458999999999999999999998642
Q ss_pred ----------------EEEEechhhhhhhcchhHHHHHHHHHHH----HhcCCcEEEeccchhccCCCCCCchhHHHHHH
Q 003525 277 ----------------FFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDELDSIAPKREKTHGEVERRIV 336 (813)
Q Consensus 277 ----------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~ 336 (813)
++.+++... ..-..++.+.+.+ ......|+||||+|.|.. ...
T Consensus 75 C~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-----------~a~ 137 (824)
T PRK07764 75 CDSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-----------QGF 137 (824)
T ss_pred cHHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-----------HHH
Confidence 122222110 1123344443332 234456999999999853 235
Q ss_pred HHHHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcC
Q 003525 337 SQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTH 415 (813)
Q Consensus 337 ~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~ 415 (813)
+.|+..|+.... .+++|.+|+.++.|.+.+++ |. ..++|..+..+....+|...++...+. ++..+..++....
T Consensus 138 NaLLK~LEEpP~--~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sg 212 (824)
T PRK07764 138 NALLKIVEEPPE--HLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGG 212 (824)
T ss_pred HHHHHHHhCCCC--CeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 678888886543 56666677888888888887 54 568888888888888887766544432 2334556666665
Q ss_pred C
Q 003525 416 G 416 (813)
Q Consensus 416 g 416 (813)
|
T Consensus 213 G 213 (824)
T PRK07764 213 G 213 (824)
T ss_pred C
Confidence 5
No 228
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=9.1e-10 Score=126.83 Aligned_cols=179 Identities=19% Similarity=0.229 Sum_probs=121.6
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe----------
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~---------- 276 (813)
+++.+.+|++|.|.+..++.|+.++... .-+..+||+||+|+||||+|++||+.+...
T Consensus 8 ~KyRP~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~ 75 (624)
T PRK14959 8 ARYRPQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNT 75 (624)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcc
Confidence 4567889999999999999998888631 124579999999999999999999988642
Q ss_pred --------------EEEEechhhhhhhcchhHHHHHHHHHH----HHhcCCcEEEeccchhccCCCCCCchhHHHHHHHH
Q 003525 277 --------------FFLINGPEIMSKLAGESESNLRKAFEE----AEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (813)
Q Consensus 277 --------------~v~v~~~~l~~~~~g~~~~~l~~vf~~----a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (813)
++.+++..- ..-..++.+.+. .......|+||||+|.+.. ...+.
T Consensus 76 C~sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~-----------~a~na 138 (624)
T PRK14959 76 CEQCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR-----------EAFNA 138 (624)
T ss_pred cHHHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH-----------HHHHH
Confidence 233333110 111233333222 2233456999999998842 23466
Q ss_pred HHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcc-ccchhhHHHHhhcCCC
Q 003525 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTHGY 417 (813)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l-~~~~~l~~la~~t~g~ 417 (813)
|+..++... ..+++|.+|+.+..+.+.+++ |+ ..++|..++.++...+|+..+....+ .++..+..++..+.|-
T Consensus 139 LLk~LEEP~--~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~Gd 213 (624)
T PRK14959 139 LLKTLEEPP--ARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGS 213 (624)
T ss_pred HHHHhhccC--CCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 777777532 357777788888888888776 55 46789999999888888776554433 2334567777777664
Q ss_pred ch
Q 003525 418 VG 419 (813)
Q Consensus 418 ~~ 419 (813)
..
T Consensus 214 lR 215 (624)
T PRK14959 214 VR 215 (624)
T ss_pred HH
Confidence 43
No 229
>PRK09087 hypothetical protein; Validated
Probab=99.14 E-value=2.9e-10 Score=117.23 Aligned_cols=149 Identities=20% Similarity=0.208 Sum_probs=97.6
Q ss_pred eeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhhhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCC
Q 003525 524 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGD 603 (813)
Q Consensus 524 gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~ 603 (813)
.++|+||+|||||+|+++++...+..++ +..++... ++..... .+++|||++.+..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~~~~~~-----------~~~~~~~---~~l~iDDi~~~~~-------- 101 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLI--HPNEIGSD-----------AANAAAE---GPVLIEDIDAGGF-------- 101 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEe--cHHHcchH-----------HHHhhhc---CeEEEECCCCCCC--------
Confidence 4999999999999999999987765533 32222211 1112222 3889999997621
Q ss_pred CCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCC---CCccccCCCCcc--cccccCCCCHHHHHHHHHHHhccCCCC
Q 003525 604 AGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEASRLQIFKACLRKSPIS 678 (813)
Q Consensus 604 ~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~---ld~allr~gRf~--~~i~~~~p~~~~r~~Il~~~l~~~~~~ 678 (813)
. ...|+..++.....++.+||+++..|.. ..+.|.+ ||. .++.+.+|+.++|.+|++.+++..++.
T Consensus 102 -~------~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~ 172 (226)
T PRK09087 102 -D------ETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLY 172 (226)
T ss_pred -C------HHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 0 1335555555555566788877776653 3577877 775 789999999999999999999776554
Q ss_pred Ccc-cHHHHHHHcCCCCHHHHHHHHHHHH
Q 003525 679 PDV-DLSALARYTHGFSGADITEVCQRAC 706 (813)
Q Consensus 679 ~~~-d~~~la~~~~g~sg~di~~l~~~a~ 706 (813)
-+. -++.|++...+ +-+.+..++....
T Consensus 173 l~~ev~~~La~~~~r-~~~~l~~~l~~L~ 200 (226)
T PRK09087 173 VDPHVVYYLVSRMER-SLFAAQTIVDRLD 200 (226)
T ss_pred CCHHHHHHHHHHhhh-hHHHHHHHHHHHH
Confidence 332 36677776552 3444444444443
No 230
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.13 E-value=2.5e-09 Score=111.31 Aligned_cols=173 Identities=14% Similarity=0.199 Sum_probs=104.4
Q ss_pred CCcccc--cChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhC---CeEEEEechhhh
Q 003525 212 VGYDDV--GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---AFFFLINGPEIM 286 (813)
Q Consensus 212 ~~~~~i--~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~---~~~v~v~~~~l~ 286 (813)
.+|++. |+....+..++++... ..+..++|+||+|||||+|++++++.+. ..+.+++.....
T Consensus 19 ~~fd~f~~~~n~~a~~~l~~~~~~-------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~ 85 (235)
T PRK08084 19 ETFASFYPGDNDSLLAALQNALRQ-------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRA 85 (235)
T ss_pred CCccccccCccHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHh
Confidence 344443 2345555666665432 2235799999999999999999998753 344555544322
Q ss_pred hhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCc-EEEEEecCCCCC--
Q 003525 287 SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH-VIVMGATNRPNS-- 363 (813)
Q Consensus 287 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~-vivi~atn~~~~-- 363 (813)
.. ...+++.... ..+++|||++.+..+. . ....|...++.....++ .+++.+++.|..
T Consensus 86 ~~--------~~~~~~~~~~--~dlliiDdi~~~~~~~-----~----~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~ 146 (235)
T PRK08084 86 WF--------VPEVLEGMEQ--LSLVCIDNIECIAGDE-----L----WEMAIFDLYNRILESGRTRLLITGDRPPRQLN 146 (235)
T ss_pred hh--------hHHHHHHhhh--CCEEEEeChhhhcCCH-----H----HHHHHHHHHHHHHHcCCCeEEEeCCCChHHcC
Confidence 11 1122222221 3589999999885432 1 12234444444333333 345555556555
Q ss_pred -CCHHhhccCCcc--eEEEcCCCCHHHHHHHHHHHhcC--CccccchhhHHHHhhcCCCch
Q 003525 364 -IDPALRRFGRFD--REIDIGVPDEVGRLEILRIHTKN--MKLAEDVDLERVAKDTHGYVG 419 (813)
Q Consensus 364 -ld~~l~r~~Rf~--~~i~i~~p~~~~R~~Il~~~~~~--~~l~~~~~l~~la~~t~g~~~ 419 (813)
+.+.|++ |+. ..+.+..|+.+++.++++..... +.+. +..+..++....+-..
T Consensus 147 ~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~-~~v~~~L~~~~~~d~r 204 (235)
T PRK08084 147 LGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELP-EDVGRFLLKRLDREMR 204 (235)
T ss_pred cccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHhhcCCHH
Confidence 5788888 653 78899999999999999875543 3343 3456777777766543
No 231
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.13 E-value=1.6e-10 Score=129.64 Aligned_cols=112 Identities=20% Similarity=0.275 Sum_probs=77.6
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeE------EEEechhhhh-----------------------------
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF------FLINGPEIMS----------------------------- 287 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~------v~v~~~~l~~----------------------------- 287 (813)
+|.+.+++.+.|+|.+||||||++++|.+.+.... +.+++.++.+
T Consensus 29 sf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~ 108 (539)
T COG1123 29 SFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVM 108 (539)
T ss_pred eEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchh
Confidence 45678899999999999999999999998875431 3344433211
Q ss_pred -----------------------------------------hhcch--hHHHHHHHHHHHHhcCCcEEEeccchhccCCC
Q 003525 288 -----------------------------------------KLAGE--SESNLRKAFEEAEKNAPSIIFIDELDSIAPKR 324 (813)
Q Consensus 288 -----------------------------------------~~~g~--~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~ 324 (813)
.|..+ ...+-|.++.-+....|.+|+.||
T Consensus 109 tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDE-------- 180 (539)
T COG1123 109 TIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADE-------- 180 (539)
T ss_pred hHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECC--------
Confidence 01100 123345566667777899999999
Q ss_pred CCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCC
Q 003525 325 EKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI 364 (813)
Q Consensus 325 ~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~l 364 (813)
+....+-.+..+++.++..+....++.++..|+++.-+
T Consensus 181 --PTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vv 218 (539)
T COG1123 181 --PTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVV 218 (539)
T ss_pred --CccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHH
Confidence 44444556678888888888877788888889876533
No 232
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.13 E-value=1.3e-09 Score=113.70 Aligned_cols=190 Identities=25% Similarity=0.405 Sum_probs=120.4
Q ss_pred cccCCCCcccccChHHHHHH---HHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe---EEEE
Q 003525 207 ERLNEVGYDDVGGVRKQMAQ---IRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---FFLI 280 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~---i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~---~v~v 280 (813)
++..+-+++|.+|+++.+.+ |+.+++. ..-..++|+||||||||||||.|+.-...+ |+.+
T Consensus 130 ermRPktL~dyvGQ~hlv~q~gllrs~ieq-------------~~ipSmIlWGppG~GKTtlArlia~tsk~~Syrfvel 196 (554)
T KOG2028|consen 130 ERMRPKTLDDYVGQSHLVGQDGLLRSLIEQ-------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVEL 196 (554)
T ss_pred hhcCcchHHHhcchhhhcCcchHHHHHHHc-------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEE
Confidence 34566788888888887644 4444442 234579999999999999999999887654 5666
Q ss_pred echhhhhhhcchhHHHHHHHHHHHHh-----cCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEE
Q 003525 281 NGPEIMSKLAGESESNLRKAFEEAEK-----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVM 355 (813)
Q Consensus 281 ~~~~l~~~~~g~~~~~l~~vf~~a~~-----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi 355 (813)
+... ..-..+|.+|+.+.. ....|||||||+.+-...+ +.++-. ...+.|++|
T Consensus 197 SAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQ-----------D~fLP~----VE~G~I~lI 254 (554)
T KOG2028|consen 197 SATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQ-----------DTFLPH----VENGDITLI 254 (554)
T ss_pred eccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhh-----------hcccce----eccCceEEE
Confidence 5422 223567888888765 3568999999998854322 122222 235678888
Q ss_pred EecC-CC-CCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhc----------CCcc----ccchhhHHHHhhcCCCch
Q 003525 356 GATN-RP-NSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTK----------NMKL----AEDVDLERVAKDTHGYVG 419 (813)
Q Consensus 356 ~atn-~~-~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~----------~~~l----~~~~~l~~la~~t~g~~~ 419 (813)
|+|. .| -.+..+|.+.. +.+.+.......-..||..-.. .++. .++..++.++..+.|-..
T Consensus 255 GATTENPSFqln~aLlSRC---~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 255 GATTENPSFQLNAALLSRC---RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred ecccCCCccchhHHHHhcc---ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 7664 33 35677777633 3456666677777777764211 1111 123456778888888766
Q ss_pred HHHHHHHHHHHHHHH
Q 003525 420 SDLAALCTEAALQCI 434 (813)
Q Consensus 420 ~dl~~l~~~a~~~~~ 434 (813)
..+..|--.+.+.+.
T Consensus 332 ~aLN~Lems~~m~~t 346 (554)
T KOG2028|consen 332 AALNALEMSLSMFCT 346 (554)
T ss_pred HHHHHHHHHHHHHHh
Confidence 666655444444443
No 233
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.12 E-value=9.7e-10 Score=119.12 Aligned_cols=161 Identities=22% Similarity=0.358 Sum_probs=106.8
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCC-------eEEEE-e
Q 003525 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISV-K 554 (813)
Q Consensus 483 ~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~-------~~i~v-~ 554 (813)
+...|.+|.|++++|..|.-....| ...|+||.|++|||||++|++++..+.. +|... .
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 4578999999999999987654432 2247999999999999999999887631 22100 0
Q ss_pred ccchh-----h---------------hc----ccccHHH------HHHHHHHHH---------hCCCeEEEEecchhhhh
Q 003525 555 GPELL-----T---------------MW----FGESEAN------VREIFDKAR---------QSAPCVLFFDELDSIAT 595 (813)
Q Consensus 555 ~~~l~-----~---------------~~----vg~se~~------i~~vF~~a~---------~~~p~il~iDEid~l~~ 595 (813)
.++.. . .+ .|.++.. +...|.... +..-.+||+|||+.+.
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~- 157 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD- 157 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC-
Confidence 01110 0 00 1112221 112222211 1122599999999974
Q ss_pred ccCCCCCCCCchHHHHHHHHHHHHhccC-----------CCCcEEEEeccCCCC-CCCccccCCCCcccccccCCCC-HH
Q 003525 596 QRGSSTGDAGGAADRVLNQLLTEMDGMN-----------AKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLPD-EA 662 (813)
Q Consensus 596 ~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----------~~~~v~vi~aTn~~~-~ld~allr~gRf~~~i~~~~p~-~~ 662 (813)
..+++.||..|+... ...++++|+|.|..+ .+.++++. ||...+.+..|+ .+
T Consensus 158 -------------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~ 222 (350)
T CHL00081 158 -------------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPE 222 (350)
T ss_pred -------------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChH
Confidence 346677777775411 134788999888765 58999998 999999999997 69
Q ss_pred HHHHHHHHHh
Q 003525 663 SRLQIFKACL 672 (813)
Q Consensus 663 ~r~~Il~~~l 672 (813)
.+.+|++...
T Consensus 223 ~e~~il~~~~ 232 (350)
T CHL00081 223 LRVKIVEQRT 232 (350)
T ss_pred HHHHHHHhhh
Confidence 9999998864
No 234
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.12 E-value=1.1e-09 Score=112.65 Aligned_cols=179 Identities=20% Similarity=0.270 Sum_probs=116.9
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe------EEEE
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------FFLI 280 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~------~v~v 280 (813)
+++.+-+|+++.|.+.+++.+...+.- .-..++|||||||||||+.++++|.++..+ +...
T Consensus 28 eKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~l 94 (346)
T KOG0989|consen 28 EKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLEL 94 (346)
T ss_pred HHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhh
Confidence 466788999999999999999877652 234579999999999999999999998652 2334
Q ss_pred echhhhhhhcchhHHHHHHHHHHHHh---------cCC-cEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCC
Q 003525 281 NGPEIMSKLAGESESNLRKAFEEAEK---------NAP-SIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRA 350 (813)
Q Consensus 281 ~~~~l~~~~~g~~~~~l~~vf~~a~~---------~~p-~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~ 350 (813)
|.++..+.... ..++. -|..... ..| -|++|||.|.+.. .....|...|+....
T Consensus 95 naSderGisvv--r~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts-----------daq~aLrr~mE~~s~-- 158 (346)
T KOG0989|consen 95 NASDERGISVV--REKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS-----------DAQAALRRTMEDFSR-- 158 (346)
T ss_pred cccccccccch--hhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhhH-----------HHHHHHHHHHhcccc--
Confidence 44443332211 11111 1111111 122 6999999998853 344677888887544
Q ss_pred cEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCCC
Q 003525 351 HVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 417 (813)
Q Consensus 351 ~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 417 (813)
.+.++..||.++.|...+.+ |.. .+.|+....+.....|+..+..-.+. ++..+..++....|-
T Consensus 159 ~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 159 TTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGD 223 (346)
T ss_pred ceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc
Confidence 45666789999988877776 543 35666666666666666655444433 233567777776664
No 235
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.12 E-value=1.3e-09 Score=103.65 Aligned_cols=121 Identities=46% Similarity=0.746 Sum_probs=78.8
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHh---CCeEEEEechhhhhhhcchhHHH---HHHHHHHHHhcCCcEEEeccchhcc
Q 003525 248 PPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGESESN---LRKAFEEAEKNAPSIIFIDELDSIA 321 (813)
Q Consensus 248 ~~~~vLL~GppGsGKTtLar~la~~l---~~~~v~v~~~~l~~~~~g~~~~~---l~~vf~~a~~~~p~il~iDEid~l~ 321 (813)
.+.+++|+||||||||++++.+++.+ +..++.+++.+............ ....+.......+.++++||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 46789999999999999999999998 77888888876654332221111 1222233444567899999999772
Q ss_pred CCCCCCchhHHHHHHHHHHHHhhcccc----CCcEEEEEecCCCC--CCCHHhhccCCcceEEEcC
Q 003525 322 PKREKTHGEVERRIVSQLLTLMDGLKS----RAHVIVMGATNRPN--SIDPALRRFGRFDREIDIG 381 (813)
Q Consensus 322 ~~~~~~~~~~~~~v~~~Ll~~ld~~~~----~~~vivi~atn~~~--~ld~~l~r~~Rf~~~i~i~ 381 (813)
. .....+...+..... ...+.+|++++... .+++.+.. ||+..+.++
T Consensus 98 ~-----------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 R-----------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred H-----------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 1 112334444443322 34677778888776 56677665 777666654
No 236
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.12 E-value=2.7e-09 Score=122.29 Aligned_cols=186 Identities=17% Similarity=0.242 Sum_probs=121.7
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCC-----------
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA----------- 275 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~----------- 275 (813)
.++.+.+|+++.|.+..++.++..+... ..+..+||+||+|+||||+|+.+|+.+..
T Consensus 8 ~KyRP~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~ 75 (546)
T PRK14957 8 RKYRPQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNK 75 (546)
T ss_pred HHHCcCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 3567889999999999999998887631 22445899999999999999999998753
Q ss_pred -------------eEEEEechhhhhhhcchhHHHHHHHHHHHH----hcCCcEEEeccchhccCCCCCCchhHHHHHHHH
Q 003525 276 -------------FFFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (813)
Q Consensus 276 -------------~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (813)
.++.+++..- ..-..++.+++.+. .....|+||||+|.+.. ...+.
T Consensus 76 C~sC~~i~~~~~~dlieidaas~------~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-----------~a~na 138 (546)
T PRK14957 76 CENCVAINNNSFIDLIEIDAASR------TGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-----------QSFNA 138 (546)
T ss_pred cHHHHHHhcCCCCceEEeecccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH-----------HHHHH
Confidence 1222332110 11223445544432 23456999999988742 24467
Q ss_pred HHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCCC
Q 003525 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 417 (813)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 417 (813)
|+..++... ..+.+|.+|+.+..+.+.+++ |. ..+++..++.++-...++..++...+. ++..+..++..+.|-
T Consensus 139 LLK~LEepp--~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~Gd 213 (546)
T PRK14957 139 LLKTLEEPP--EYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGS 213 (546)
T ss_pred HHHHHhcCC--CCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 778887542 355666666778888878776 54 668999999888877777655543332 334456677666543
Q ss_pred chHHHHHHHH
Q 003525 418 VGSDLAALCT 427 (813)
Q Consensus 418 ~~~dl~~l~~ 427 (813)
..++..++.
T Consensus 214 -lR~alnlLe 222 (546)
T PRK14957 214 -LRDALSLLD 222 (546)
T ss_pred -HHHHHHHHH
Confidence 333333333
No 237
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.11 E-value=1.2e-09 Score=125.27 Aligned_cols=158 Identities=18% Similarity=0.313 Sum_probs=103.9
Q ss_pred ceEEEECCCCCchHHHHHHHHHHh-----CCeEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCC
Q 003525 250 KGILLYGPPGSGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKR 324 (813)
Q Consensus 250 ~~vLL~GppGsGKTtLar~la~~l-----~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~ 324 (813)
..++|||++|||||+|+++|++.+ +..++++++.++...+...........|..-. ..+++|+||||+++..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCH
Confidence 349999999999999999999986 45678999888776554333222222343322 346899999999986543
Q ss_pred CCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCC---CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcc
Q 003525 325 EKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN---SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL 401 (813)
Q Consensus 325 ~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~---~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l 401 (813)
. ....|+.+++.+.....-+||.+...+. .+++.|++.......+++..|+.+.|..||+.++....+
T Consensus 394 ~---------tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l 464 (617)
T PRK14086 394 S---------TQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQL 464 (617)
T ss_pred H---------HHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 1 1234455555544444445554433343 567888883333567799999999999999987764433
Q ss_pred c-cchhhHHHHhhcCCC
Q 003525 402 A-EDVDLERVAKDTHGY 417 (813)
Q Consensus 402 ~-~~~~l~~la~~t~g~ 417 (813)
. .+..++.|+....+-
T Consensus 465 ~l~~eVi~yLa~r~~rn 481 (617)
T PRK14086 465 NAPPEVLEFIASRISRN 481 (617)
T ss_pred CCCHHHHHHHHHhccCC
Confidence 2 233567777776543
No 238
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.11 E-value=4.5e-09 Score=107.93 Aligned_cols=157 Identities=23% Similarity=0.422 Sum_probs=97.0
Q ss_pred ceEEEECCCCCchHHHHHHHHHHh-----CCeEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCC
Q 003525 250 KGILLYGPPGSGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKR 324 (813)
Q Consensus 250 ~~vLL~GppGsGKTtLar~la~~l-----~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~ 324 (813)
..++||||+|+|||+|+++++++. +..++++++.++...+.......--.-|..-. ....+|+||+++.+..+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~DlL~iDDi~~l~~~- 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRL-RSADLLIIDDIQFLAGK- 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHH-CTSSEEEEETGGGGTTH-
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhh-hcCCEEEEecchhhcCc-
Confidence 459999999999999999999874 45678888877765433221111111122222 24579999999998543
Q ss_pred CCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCC---CHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcc
Q 003525 325 EKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL 401 (813)
Q Consensus 325 ~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~l---d~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l 401 (813)
......|..+++.+...++.+++++...|..+ ++.|++.-.....+.+..|+.+.|.+|++..+....+
T Consensus 113 --------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~ 184 (219)
T PF00308_consen 113 --------QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGI 184 (219)
T ss_dssp --------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT-
T ss_pred --------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCC
Confidence 23446667777776666667777666666544 6777762223457899999999999999987654433
Q ss_pred c-cchhhHHHHhhcCC
Q 003525 402 A-EDVDLERVAKDTHG 416 (813)
Q Consensus 402 ~-~~~~l~~la~~t~g 416 (813)
. ++..+..++....+
T Consensus 185 ~l~~~v~~~l~~~~~~ 200 (219)
T PF00308_consen 185 ELPEEVIEYLARRFRR 200 (219)
T ss_dssp -S-HHHHHHHHHHTTS
T ss_pred CCcHHHHHHHHHhhcC
Confidence 2 22345666666544
No 239
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.11 E-value=2e-09 Score=123.34 Aligned_cols=177 Identities=18% Similarity=0.250 Sum_probs=121.1
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe----------
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~---------- 276 (813)
+++.+.+|+++.|.+..++.++.++.. -..+..+||+||+|+||||+|+++|..+.+.
T Consensus 8 ~KyRP~~F~dIIGQe~iv~~L~~aI~~------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~ 75 (605)
T PRK05896 8 RKYRPHNFKQIIGQELIKKILVNAILN------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNS 75 (605)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 456788999999999999999887753 1234579999999999999999999987531
Q ss_pred --------------EEEEechhhhhhhcchhHHHHHHHHHHHHh----cCCcEEEeccchhccCCCCCCchhHHHHHHHH
Q 003525 277 --------------FFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (813)
Q Consensus 277 --------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (813)
++.+++.. ...-..++.+...+.. ....+++|||+|.+.. ...+.
T Consensus 76 C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~-----------~A~Na 138 (605)
T PRK05896 76 CSVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST-----------SAWNA 138 (605)
T ss_pred cHHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH-----------HHHHH
Confidence 22222211 0122345655554432 2335899999998742 13467
Q ss_pred HHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcc-ccchhhHHHHhhcCCC
Q 003525 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTHGY 417 (813)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l-~~~~~l~~la~~t~g~ 417 (813)
|+..|+... ..+++|.+|+.+..+.+.+++ |+ ..+++..++..+....+...+...++ .++..+..++..+.|-
T Consensus 139 LLKtLEEPp--~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~Gd 213 (605)
T PRK05896 139 LLKTLEEPP--KHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGS 213 (605)
T ss_pred HHHHHHhCC--CcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCc
Confidence 788787543 356777777888999988887 54 45899999999888888766544332 2233466777777664
No 240
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.11 E-value=2.1e-09 Score=124.76 Aligned_cols=192 Identities=16% Similarity=0.197 Sum_probs=124.2
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeE---------
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--------- 277 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~--------- 277 (813)
.++.+-+|+++.|.+..++.|+.++..- .-+..+||+||+|+||||+++++|+.+++.-
T Consensus 8 ~KyRP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~ 75 (618)
T PRK14951 8 RKYRPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA 75 (618)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC
Confidence 3567889999999999999998887641 2245689999999999999999999886410
Q ss_pred ----EEEechhhhh----------hhcchhHHHHHHHHHHHHh----cCCcEEEeccchhccCCCCCCchhHHHHHHHHH
Q 003525 278 ----FLINGPEIMS----------KLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQL 339 (813)
Q Consensus 278 ----v~v~~~~l~~----------~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 339 (813)
..-+|..+.. ......-..++.+++.+.. ....|++|||+|.+... ..+.|
T Consensus 76 ~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~-----------a~NaL 144 (618)
T PRK14951 76 TPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT-----------AFNAM 144 (618)
T ss_pred CCCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH-----------HHHHH
Confidence 0011111110 0001122345666655432 22359999999988432 24567
Q ss_pred HHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCCCc
Q 003525 340 LTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYV 418 (813)
Q Consensus 340 l~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 418 (813)
+..++... ..+.+|.+|+.+..+.+.+++ |. ..+++..++.++....|+..+....+. ++..+..++....| .
T Consensus 145 LKtLEEPP--~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G-s 218 (618)
T PRK14951 145 LKTLEEPP--EYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG-S 218 (618)
T ss_pred HHhcccCC--CCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 77776532 356666677788888888776 54 568899999888888887666544332 23456777777666 3
Q ss_pred hHHHHHHHH
Q 003525 419 GSDLAALCT 427 (813)
Q Consensus 419 ~~dl~~l~~ 427 (813)
..++..++.
T Consensus 219 lR~al~lLd 227 (618)
T PRK14951 219 MRDALSLTD 227 (618)
T ss_pred HHHHHHHHH
Confidence 344444443
No 241
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.11 E-value=2.4e-09 Score=124.55 Aligned_cols=187 Identities=21% Similarity=0.306 Sum_probs=127.2
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe-----------
Q 003525 208 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 276 (813)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~----------- 276 (813)
++.+.+|+++.|.++.++.++..+.. -..+..+||+||+|||||++|+.+|+.+.+.
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C 76 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC 76 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 56788999999999999999888763 1235568999999999999999999987531
Q ss_pred -------------EEEEechhhhhhhcchhHHHHHHHHHHHHh----cCCcEEEeccchhccCCCCCCchhHHHHHHHHH
Q 003525 277 -------------FFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQL 339 (813)
Q Consensus 277 -------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 339 (813)
++.+++.. +.....++.+...+.. ....|++|||+|.+.. ...+.|
T Consensus 77 ~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-----------~a~naL 139 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-----------GAFNAL 139 (559)
T ss_pred HHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHH
Confidence 23333211 1233456666665432 3346999999998842 234677
Q ss_pred HHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCCCc
Q 003525 340 LTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYV 418 (813)
Q Consensus 340 l~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 418 (813)
+..++.. ...+++|.+|+.++.+.+.+++ |+ ..++|..|+..+....++..++...+. ++..+..++....| .
T Consensus 140 LKtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~ 213 (559)
T PRK05563 140 LKTLEEP--PAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-G 213 (559)
T ss_pred HHHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 7777754 3356666677788899998887 55 457899999988888888766554432 33456677776665 4
Q ss_pred hHHHHHHHHHH
Q 003525 419 GSDLAALCTEA 429 (813)
Q Consensus 419 ~~dl~~l~~~a 429 (813)
..++..++..+
T Consensus 214 ~R~al~~Ldq~ 224 (559)
T PRK05563 214 MRDALSILDQA 224 (559)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 242
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.10 E-value=4.2e-10 Score=122.02 Aligned_cols=155 Identities=23% Similarity=0.329 Sum_probs=100.9
Q ss_pred ccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhC-------CeEE-------
Q 003525 486 SWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-------ANFI------- 551 (813)
Q Consensus 486 ~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~-------~~~i------- 551 (813)
.|..|.|++++|..|.-.+..| ...+++|.|+||+|||||++++++.+. .++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 4678999999998875433221 134699999999999999999998872 2211
Q ss_pred ------EE--ec-------------cchh-----hhccccc--HHHH--------HHHHHHHHhCCCeEEEEecchhhhh
Q 003525 552 ------SV--KG-------------PELL-----TMWFGES--EANV--------REIFDKARQSAPCVLFFDELDSIAT 595 (813)
Q Consensus 552 ------~v--~~-------------~~l~-----~~~vg~s--e~~i--------~~vF~~a~~~~p~il~iDEid~l~~ 595 (813)
.. .. .++- +..+|.. ++.+ .-++.+|. ..++|+|||+.+.
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~---~GvL~lDEi~~L~- 144 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARAN---RGILYIDEVNLLE- 144 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceecc---CCEEEecChHhCC-
Confidence 00 00 0110 0122221 0000 01122222 2599999999973
Q ss_pred ccCCCCCCCCchHHHHHHHHHHHHhccC-----------CCCcEEEEeccCCCC-CCCccccCCCCcccccccCCCCH-H
Q 003525 596 QRGSSTGDAGGAADRVLNQLLTEMDGMN-----------AKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLPDE-A 662 (813)
Q Consensus 596 ~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----------~~~~v~vi~aTn~~~-~ld~allr~gRf~~~i~~~~p~~-~ 662 (813)
..+++.|+..|+.-. ...++++|+|+|..+ .+.++++. ||...+.++.|+. +
T Consensus 145 -------------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~e 209 (337)
T TIGR02030 145 -------------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVE 209 (337)
T ss_pred -------------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHH
Confidence 346777777775321 124689999998665 68899998 9999999998876 8
Q ss_pred HHHHHHHHHh
Q 003525 663 SRLQIFKACL 672 (813)
Q Consensus 663 ~r~~Il~~~l 672 (813)
+|.+|++...
T Consensus 210 er~eIL~~~~ 219 (337)
T TIGR02030 210 LRVEIVERRT 219 (337)
T ss_pred HHHHHHHhhh
Confidence 9999998754
No 243
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.10 E-value=1.9e-10 Score=113.02 Aligned_cols=112 Identities=26% Similarity=0.370 Sum_probs=77.4
Q ss_pred CceeeeecCCCCChhHHHHHHHHHhCC----eEEEEeccchhhhcccccHHHHHHHHHHH----HhCCCeEEEEecchhh
Q 003525 522 SKGVLFYGPPGCGKTLLAKAIANECQA----NFISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSI 593 (813)
Q Consensus 522 ~~gilL~GppGtGKT~la~ala~~~~~----~~i~v~~~~l~~~~vg~se~~i~~vF~~a----~~~~p~il~iDEid~l 593 (813)
...++|+||+|||||.+|+++|..+.. +++.++++++... ++.+..+..++..+ ......||||||||+.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa 80 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKA 80 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhc
Confidence 445999999999999999999999995 8999999988651 11122222222211 0111139999999999
Q ss_pred hhccCCCCCCCCchHHHHHHHHHHHHhccC---------CCCcEEEEeccCCCC
Q 003525 594 ATQRGSSTGDAGGAADRVLNQLLTEMDGMN---------AKKTVFIIGATNRPD 638 (813)
Q Consensus 594 ~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~---------~~~~v~vi~aTn~~~ 638 (813)
.+.. ....+-....+++.||+.||+.. +.+++++|+|+|.-.
T Consensus 81 ~~~~---~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 81 HPSN---SGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp SHTT---TTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cccc---cccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 8751 12223455689999999998742 235799999999654
No 244
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.09 E-value=3.2e-09 Score=112.36 Aligned_cols=133 Identities=26% Similarity=0.309 Sum_probs=91.0
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechh------hhhhhcchhHHHH---------------------HHH
Q 003525 248 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPE------IMSKLAGESESNL---------------------RKA 300 (813)
Q Consensus 248 ~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~------l~~~~~g~~~~~l---------------------~~v 300 (813)
.+.+++|.||||||||++|++||..++.+++.++|.. +++.+.+.....+ +.+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 3678999999999999999999999999999998743 3333222111110 011
Q ss_pred HHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccc--------------cCCcEEEEEecCCCC----
Q 003525 301 FEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK--------------SRAHVIVMGATNRPN---- 362 (813)
Q Consensus 301 f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--------------~~~~vivi~atn~~~---- 362 (813)
+. +.. ...++++||++.+.+ .+...|+..|+.-. .+..+.+|+|+|...
T Consensus 100 ~~-A~~-~g~~lllDEi~r~~~-----------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 100 TL-AVR-EGFTLVYDEFTRSKP-----------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HH-HHH-cCCEEEEcchhhCCH-----------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 11 212 346999999998642 23455666664311 223567888999752
Q ss_pred -CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHh
Q 003525 363 -SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHT 396 (813)
Q Consensus 363 -~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~ 396 (813)
.+++++.+ || ..+.++.|+.+.-.+|++.+.
T Consensus 167 ~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 167 HETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 56888887 77 568999999999999998764
No 245
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.09 E-value=2.5e-09 Score=118.49 Aligned_cols=219 Identities=26% Similarity=0.345 Sum_probs=130.0
Q ss_pred cccChHHHHHHHHHHHHcccCChhhhhh----hCC-CCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhh-hh
Q 003525 216 DVGGVRKQMAQIRELVELPLRHPQLFKS----IGV-KPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS-KL 289 (813)
Q Consensus 216 ~i~G~~~~~~~i~~~v~~~l~~~~~~~~----l~i-~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~-~~ 289 (813)
.+.|+++.++.+...+.....+-..... -++ ....++||+||||||||++|++||..++.++..+++..+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 3899999999887665321111000000 011 12468999999999999999999999999999888877642 46
Q ss_pred cchh-HHHHHHHHHHH----HhcCCcEEEeccchhccCCCCCCc---hhHHHHHHHHHHHHhhcccc-----------CC
Q 003525 290 AGES-ESNLRKAFEEA----EKNAPSIIFIDELDSIAPKREKTH---GEVERRIVSQLLTLMDGLKS-----------RA 350 (813)
Q Consensus 290 ~g~~-~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~~-----------~~ 350 (813)
.|.. +..+...++.+ ....+++|||||+|.+.++...+. +.....+...|+..|++... ..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 6653 34444444422 234678999999999987543221 11112466778888865421 12
Q ss_pred cEEEEEecCCCC--------------------------CC---------------CHHhhc-------cCCcceEEEcCC
Q 003525 351 HVIVMGATNRPN--------------------------SI---------------DPALRR-------FGRFDREIDIGV 382 (813)
Q Consensus 351 ~vivi~atn~~~--------------------------~l---------------d~~l~r-------~~Rf~~~i~i~~ 382 (813)
+.++|.|+|-.. .. ...+.+ .+|++..+.+.+
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~p 317 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEK 317 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCC
Confidence 456666666510 00 001111 268888888888
Q ss_pred CCHHHHHHHHHHH----hc---------CCccc-cchhhHHHHhh--cCCCchHHHHHHHHHHHHHHH
Q 003525 383 PDEVGRLEILRIH----TK---------NMKLA-EDVDLERVAKD--THGYVGSDLAALCTEAALQCI 434 (813)
Q Consensus 383 p~~~~R~~Il~~~----~~---------~~~l~-~~~~l~~la~~--t~g~~~~dl~~l~~~a~~~~~ 434 (813)
.+.+...+|+... .+ +..+. ++.-++.++.. ...|..+.+..++....+..+
T Consensus 318 L~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m 385 (413)
T TIGR00382 318 LDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVM 385 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHH
Confidence 8988888887642 11 11121 22335566654 345555666666665544443
No 246
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=1.6e-09 Score=124.99 Aligned_cols=188 Identities=16% Similarity=0.250 Sum_probs=124.1
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe----------
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~---------- 276 (813)
.++.+.+|++|.|.++.++.+..++... ..+..+||+||+|+||||+|+++|+.++..
T Consensus 8 ~k~rP~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~ 75 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGV 75 (527)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 3556789999999999999998887631 224568999999999999999999988642
Q ss_pred --------------EEEEechhhhhhhcchhHHHHHHHHHHHHh----cCCcEEEeccchhccCCCCCCchhHHHHHHHH
Q 003525 277 --------------FFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (813)
Q Consensus 277 --------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (813)
++.+++.. ......++.++..+.. ....|+||||+|.+.. ...+.
T Consensus 76 C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-----------~a~na 138 (527)
T PRK14969 76 CSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-----------SAFNA 138 (527)
T ss_pred CHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-----------HHHHH
Confidence 12222110 1223456666665532 2345999999997742 23466
Q ss_pred HHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCCC
Q 003525 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 417 (813)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 417 (813)
|+..++... ..+.+|.+|+++..+.+.+++ |. ..++|..++.++-...+...+....+. ++..+..++..+.|-
T Consensus 139 LLK~LEepp--~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gs 213 (527)
T PRK14969 139 MLKTLEEPP--EHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGS 213 (527)
T ss_pred HHHHHhCCC--CCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 777777632 356667777778888877776 43 557889998888877776655433332 233456677666554
Q ss_pred chHHHHHHHHHH
Q 003525 418 VGSDLAALCTEA 429 (813)
Q Consensus 418 ~~~dl~~l~~~a 429 (813)
..++..++..+
T Consensus 214 -lr~al~lldqa 224 (527)
T PRK14969 214 -MRDALSLLDQA 224 (527)
T ss_pred -HHHHHHHHHHH
Confidence 34444455444
No 247
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.09 E-value=2.5e-09 Score=126.88 Aligned_cols=172 Identities=24% Similarity=0.386 Sum_probs=114.7
Q ss_pred cccCCCCcccccChHHHHH---HHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEech
Q 003525 207 ERLNEVGYDDVGGVRKQMA---QIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGP 283 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~---~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~ 283 (813)
+++.+-+++++.|.++.+. .+++++.. ....+++|+|||||||||+|+++++.++..++.+++.
T Consensus 20 ek~RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~ 86 (725)
T PRK13341 20 DRLRPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAV 86 (725)
T ss_pred HhcCCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhh
Confidence 3566788999999999885 45555542 2335799999999999999999999999888888864
Q ss_pred hhhhhhcchhHHHHHHHHHHHH-----hcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEec
Q 003525 284 EIMSKLAGESESNLRKAFEEAE-----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGAT 358 (813)
Q Consensus 284 ~l~~~~~g~~~~~l~~vf~~a~-----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~at 358 (813)
... ...++.++..+. .....++||||+|.+... ..+.|+..++ ...+++|++|
T Consensus 87 ~~~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~-----------qQdaLL~~lE----~g~IiLI~aT 144 (725)
T PRK13341 87 LAG-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA-----------QQDALLPWVE----NGTITLIGAT 144 (725)
T ss_pred hhh-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH-----------HHHHHHHHhc----CceEEEEEec
Confidence 311 112333333321 134569999999987421 1234555443 3456777665
Q ss_pred CC--CCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhc-------C--CccccchhhHHHHhhcCCC
Q 003525 359 NR--PNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTK-------N--MKLAEDVDLERVAKDTHGY 417 (813)
Q Consensus 359 n~--~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~-------~--~~l~~~~~l~~la~~t~g~ 417 (813)
+. ...+++++.+ |. ..+.+++++.+++..+++..+. . ..+ ++..+..++....|-
T Consensus 145 Tenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I-~deaL~~La~~s~GD 210 (725)
T PRK13341 145 TENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDL-EPEAEKHLVDVANGD 210 (725)
T ss_pred CCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCC-CHHHHHHHHHhCCCC
Confidence 43 3467788876 43 4588999999999999987665 1 222 334567777766553
No 248
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.09 E-value=2e-09 Score=121.66 Aligned_cols=158 Identities=20% Similarity=0.356 Sum_probs=100.9
Q ss_pred ceEEEECCCCCchHHHHHHHHHHh---CCeEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCC
Q 003525 250 KGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREK 326 (813)
Q Consensus 250 ~~vLL~GppGsGKTtLar~la~~l---~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~ 326 (813)
.+++||||+|+|||+|++++++.+ +..++++++.++...........-...|.... ..+.+|+|||++++..+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~- 219 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA- 219 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh-
Confidence 579999999999999999999876 56778888776654332221111112233322 3567999999999864321
Q ss_pred CchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCC---CCCHHhhccCCcc--eEEEcCCCCHHHHHHHHHHHhcCCcc
Q 003525 327 THGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN---SIDPALRRFGRFD--REIDIGVPDEVGRLEILRIHTKNMKL 401 (813)
Q Consensus 327 ~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~---~ld~~l~r~~Rf~--~~i~i~~p~~~~R~~Il~~~~~~~~l 401 (813)
....+...++.+......++++++..|. .+++.+++ ||. ..+.+..|+.+.|..||+..+....+
T Consensus 220 --------~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~ 289 (445)
T PRK12422 220 --------TQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSI 289 (445)
T ss_pred --------hHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 1123334443333334455665555554 45677777 774 78899999999999999987765443
Q ss_pred c-cchhhHHHHhhcCCCch
Q 003525 402 A-EDVDLERVAKDTHGYVG 419 (813)
Q Consensus 402 ~-~~~~l~~la~~t~g~~~ 419 (813)
. ++..+..++....+-..
T Consensus 290 ~l~~evl~~la~~~~~dir 308 (445)
T PRK12422 290 RIEETALDFLIEALSSNVK 308 (445)
T ss_pred CCCHHHHHHHHHhcCCCHH
Confidence 2 33346667776665433
No 249
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.08 E-value=3.9e-10 Score=126.88 Aligned_cols=193 Identities=24% Similarity=0.342 Sum_probs=142.0
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeE-------E-----
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF-------I----- 551 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~-------i----- 551 (813)
...|+++.|++.+.+.|...+... +...+.||.||.|||||++||.+|.-+++.- .
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh
Confidence 457899999999999998876542 3345799999999999999999999875431 0
Q ss_pred -EEe-c--cchhh--hcccccHHHHHHHHHHHHh----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhc
Q 003525 552 -SVK-G--PELLT--MWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDG 621 (813)
Q Consensus 552 -~v~-~--~~l~~--~~vg~se~~i~~vF~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~ 621 (813)
.+. | .+++. .-...+-..+|++-+++.. ..+.|.+|||++.+- ....|.||..++.
T Consensus 80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS--------------~~afNALLKTLEE 145 (515)
T COG2812 80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS--------------KQAFNALLKTLEE 145 (515)
T ss_pred HhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh--------------HHHHHHHhccccc
Confidence 011 1 11110 0011223457777776643 446799999999973 4578999999984
Q ss_pred cCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHcCCCCHHHHHH
Q 003525 622 MNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVD-LSALARYTHGFSGADITE 700 (813)
Q Consensus 622 ~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d-~~~la~~~~g~sg~di~~ 700 (813)
+...|++|.||..|..+.+-+++ |+. ++.|...+.++....++..+.+.++.-+.+ +..+|+..+| |-+|...
T Consensus 146 --PP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDals 219 (515)
T COG2812 146 --PPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALS 219 (515)
T ss_pred --CccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHH
Confidence 45688999999999999999998 885 788999999999999999998888775555 4555665554 7788877
Q ss_pred HHHHHHHH
Q 003525 701 VCQRACKY 708 (813)
Q Consensus 701 l~~~a~~~ 708 (813)
++..|...
T Consensus 220 lLDq~i~~ 227 (515)
T COG2812 220 LLDQAIAF 227 (515)
T ss_pred HHHHHHHc
Confidence 77776655
No 250
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.08 E-value=4.2e-09 Score=123.08 Aligned_cols=184 Identities=20% Similarity=0.291 Sum_probs=123.9
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEE---Eech
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFL---INGP 283 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~---v~~~ 283 (813)
.++.+.+|++|.|.+..++.++..+... ..+..+||+||+|+|||++|+++|..+.+.... -.|.
T Consensus 10 ~KyRP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~ 77 (725)
T PRK07133 10 RKYRPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQ 77 (725)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchh
Confidence 3567889999999999999998888641 224568999999999999999999987542110 0111
Q ss_pred hh----------h--hhhcchhHHHHHHHHHHHHh----cCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccc
Q 003525 284 EI----------M--SKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK 347 (813)
Q Consensus 284 ~l----------~--~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~ 347 (813)
.. . ..........++.+.+.+.. ....|++|||+|.+.. ...+.|+..|+..
T Consensus 78 ~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~-----------~A~NALLKtLEEP- 145 (725)
T PRK07133 78 ECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK-----------SAFNALLKTLEEP- 145 (725)
T ss_pred HHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH-----------HHHHHHHHHhhcC-
Confidence 00 0 00000123446666666543 3346999999998742 2456778888764
Q ss_pred cCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCCCc
Q 003525 348 SRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYV 418 (813)
Q Consensus 348 ~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 418 (813)
...+++|.+|+.++.+.+.+++ |+ ..+.+..++..+...+|...+....+. ++..+..++..+.|-.
T Consensus 146 -P~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~Gsl 213 (725)
T PRK07133 146 -PKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSL 213 (725)
T ss_pred -CCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 3356777777888999988887 65 468999999998888887665543332 2234666777666543
No 251
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.08 E-value=3.4e-09 Score=117.64 Aligned_cols=176 Identities=21% Similarity=0.330 Sum_probs=120.2
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe----------
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~---------- 276 (813)
+++.+.+|+++.|.++.++.+++.+.. -..+..+||+||||+|||++++++++.+...
T Consensus 6 ~~~rp~~~~~iig~~~~~~~l~~~~~~------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~ 73 (355)
T TIGR02397 6 RKYRPQTFEDVIGQEHIVQTLKNAIKN------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNE 73 (355)
T ss_pred HHhCCCcHhhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 456788999999999999999887753 1235679999999999999999999887421
Q ss_pred --------------EEEEechhhhhhhcchhHHHHHHHHHHHHhc----CCcEEEeccchhccCCCCCCchhHHHHHHHH
Q 003525 277 --------------FFLINGPEIMSKLAGESESNLRKAFEEAEKN----APSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (813)
Q Consensus 277 --------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (813)
++.+++.. ......++.+++.+... ...+++|||+|.+.. ...+.
T Consensus 74 c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-----------~~~~~ 136 (355)
T TIGR02397 74 CESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-----------SAFNA 136 (355)
T ss_pred CHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH-----------HHHHH
Confidence 23333321 11233456666665432 235999999987732 23456
Q ss_pred HHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCC
Q 003525 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHG 416 (813)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g 416 (813)
|+..++... ..+++|.+++.++.+.+.+++ |+ ..++++.|+..+...++...++...+. ++..+..++....|
T Consensus 137 Ll~~le~~~--~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 210 (355)
T TIGR02397 137 LLKTLEEPP--EHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG 210 (355)
T ss_pred HHHHHhCCc--cceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 777776532 356666677888878888887 55 468999999999999988776654432 23445666666554
No 252
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.1e-09 Score=111.35 Aligned_cols=83 Identities=23% Similarity=0.381 Sum_probs=63.6
Q ss_pred eEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccC--------CCCcEEEEecc----CCCCCCCccccCCCCc
Q 003525 583 CVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN--------AKKTVFIIGAT----NRPDIIDPALLRPGRL 650 (813)
Q Consensus 583 ~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~--------~~~~v~vi~aT----n~~~~ld~allr~gRf 650 (813)
.|+||||||.++.+.+.+.. +-....|...||-.++|.. ..+.+++|++. ..|+.|=|.|. |||
T Consensus 252 GIvFIDEIDKIa~~~~~g~~--dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRf 327 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGP--DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRF 327 (444)
T ss_pred CeEEEehhhHHHhcCCCCCC--CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCC
Confidence 59999999999987553222 2233457788888888753 24568888876 46888888887 799
Q ss_pred ccccccCCCCHHHHHHHHH
Q 003525 651 DQLIYIPLPDEASRLQIFK 669 (813)
Q Consensus 651 ~~~i~~~~p~~~~r~~Il~ 669 (813)
.-.+++...+.+.-..||.
T Consensus 328 PIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 328 PIRVELDALTKEDFERILT 346 (444)
T ss_pred ceEEEcccCCHHHHHHHHc
Confidence 9999999999998888874
No 253
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.5e-09 Score=114.14 Aligned_cols=100 Identities=28% Similarity=0.475 Sum_probs=78.5
Q ss_pred ceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchh-hhccccc-HHHHHHHHHHHHh----CCCeEEEEecchhhhhc
Q 003525 523 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFGES-EANVREIFDKARQ----SAPCVLFFDELDSIATQ 596 (813)
Q Consensus 523 ~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~-~~~vg~s-e~~i~~vF~~a~~----~~p~il~iDEid~l~~~ 596 (813)
.+|||.||+|+|||+||+.||..++.||...++..|. ..|+|+. |.-|.++++.|.. ....|+||||+|++...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 4699999999999999999999999999999998886 4799987 5567778776532 23469999999999855
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHhcc
Q 003525 597 RGSSTGDAGGAADRVLNQLLTEMDGM 622 (813)
Q Consensus 597 r~~~~~~~~~~~~~vl~~lL~~ld~~ 622 (813)
-.+.....+-.++-|...||..++|-
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGt 332 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGT 332 (564)
T ss_pred CccccccccccchhHHHHHHHHhccc
Confidence 43322222334577999999999984
No 254
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.07 E-value=6.1e-10 Score=122.03 Aligned_cols=132 Identities=28% Similarity=0.426 Sum_probs=92.2
Q ss_pred CCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhh--hcccccHHHH------------HHHHHHHHhCCCeEEE
Q 003525 521 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT--MWFGESEANV------------REIFDKARQSAPCVLF 586 (813)
Q Consensus 521 ~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~--~~vg~se~~i------------~~vF~~a~~~~p~il~ 586 (813)
...+++|.||||||||++|+++|..++.+|+.+.+..-+. ..+|...-.. +.+|...+ +++|
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill 117 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILL 117 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEE
Confidence 3457999999999999999999999999999998764332 1122211111 11222221 4999
Q ss_pred EecchhhhhccCCCCCCCCchHHHHHHHHHHHHhc----------cCCCCcEEEEeccCC-----CCCCCccccCCCCcc
Q 003525 587 FDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDG----------MNAKKTVFIIGATNR-----PDIIDPALLRPGRLD 651 (813)
Q Consensus 587 iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~----------~~~~~~v~vi~aTn~-----~~~ld~allr~gRf~ 651 (813)
+|||+... ..+.+.||..|+. +.-...++||+|+|. -..|.+|+++ ||.
T Consensus 118 ~DEInra~--------------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~ 181 (329)
T COG0714 118 LDEINRAP--------------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFL 181 (329)
T ss_pred EeccccCC--------------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEE
Confidence 99998842 4577888888876 223367899999994 3457899998 998
Q ss_pred cccccCCC-CHHHHHHHHHHHh
Q 003525 652 QLIYIPLP-DEASRLQIFKACL 672 (813)
Q Consensus 652 ~~i~~~~p-~~~~r~~Il~~~l 672 (813)
..+++++| +.++...++....
T Consensus 182 ~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 182 LRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred EEEecCCCCchHHHHHHHHhCc
Confidence 89999999 4555555554444
No 255
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.06 E-value=6.4e-10 Score=104.90 Aligned_cols=126 Identities=33% Similarity=0.459 Sum_probs=83.2
Q ss_pred ceeeeecCCCCChhHHHHHHHHHhCCe---EEEEeccchhhh--------------cccccHHHHHHHHHHHHhCCCeEE
Q 003525 523 KGVLFYGPPGCGKTLLAKAIANECQAN---FISVKGPELLTM--------------WFGESEANVREIFDKARQSAPCVL 585 (813)
Q Consensus 523 ~gilL~GppGtGKT~la~ala~~~~~~---~i~v~~~~l~~~--------------~vg~se~~i~~vF~~a~~~~p~il 585 (813)
..++|+||||||||++++.+|..+... ++.+.+...... .........+.+++.++...++++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 469999999999999999999999775 777777654322 123446677889999998888999
Q ss_pred EEecchhhhhccCCCCCCCCchHHHHHHH--HHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCC
Q 003525 586 FFDELDSIATQRGSSTGDAGGAADRVLNQ--LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 659 (813)
Q Consensus 586 ~iDEid~l~~~r~~~~~~~~~~~~~vl~~--lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p 659 (813)
|+||++.+..... ...... ............+..+|+++|......+..+++ |++..+.++.+
T Consensus 83 iiDei~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDEITSLLDAEQ----------EALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR-RFDRRIVLLLI 147 (148)
T ss_pred EEECCcccCCHHH----------HHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh-ccceEEEecCC
Confidence 9999999864311 111100 000111112244568888888733344444443 88888877654
No 256
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.06 E-value=8.9e-09 Score=106.77 Aligned_cols=177 Identities=16% Similarity=0.285 Sum_probs=106.1
Q ss_pred CCCccc-c-cChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHh---CCeEEEEechhh
Q 003525 211 EVGYDD-V-GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEI 285 (813)
Q Consensus 211 ~~~~~~-i-~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l---~~~~v~v~~~~l 285 (813)
+.+|++ + |+.+..+..++++.. +...+..++|+||+|||||+|+++++... +..++.+++.++
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 344555 2 344555566666543 12346789999999999999999999875 556788887665
Q ss_pred hhhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcE-EEEEecCCCC--
Q 003525 286 MSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHV-IVMGATNRPN-- 362 (813)
Q Consensus 286 ~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v-ivi~atn~~~-- 362 (813)
... + .......+++|||++.+... ....|...++........ ++++++..+.
T Consensus 82 ~~~------------~--~~~~~~~~liiDdi~~l~~~-----------~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~ 136 (227)
T PRK08903 82 LLA------------F--DFDPEAELYAVDDVERLDDA-----------QQIALFNLFNRVRAHGQGALLVAGPAAPLAL 136 (227)
T ss_pred HHH------------H--hhcccCCEEEEeChhhcCch-----------HHHHHHHHHHHHHHcCCcEEEEeCCCCHHhC
Confidence 321 1 11234578999999987321 123455555554444443 4443333332
Q ss_pred CCCHHhhccCCc--ceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCCCchHHHHHHHH
Q 003525 363 SIDPALRRFGRF--DREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYVGSDLAALCT 427 (813)
Q Consensus 363 ~ld~~l~r~~Rf--~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~ 427 (813)
.+.+.+.+ || ...+++++|+...+..++........+. ++.-+..++....|- ...+..++.
T Consensus 137 ~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn-~~~l~~~l~ 201 (227)
T PRK08903 137 PLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRD-MPSLMALLD 201 (227)
T ss_pred CCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCC-HHHHHHHHH
Confidence 34566665 44 4789999999998888888765433322 223456666644432 333333443
No 257
>PHA02244 ATPase-like protein
Probab=99.05 E-value=1.8e-09 Score=116.20 Aligned_cols=127 Identities=20% Similarity=0.238 Sum_probs=81.9
Q ss_pred CceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhh---hcccccHHHH-HHHHHHHHhCCCeEEEEecchhhhhcc
Q 003525 522 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT---MWFGESEANV-REIFDKARQSAPCVLFFDELDSIATQR 597 (813)
Q Consensus 522 ~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~---~~vg~se~~i-~~vF~~a~~~~p~il~iDEid~l~~~r 597 (813)
...++|+||||||||++|+++|..++.+|+.++.-.-.. .+++...... ..++...+ ...++||||++.+.+
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~--~GgvLiLDEId~a~p-- 194 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFK--KGGLFFIDEIDASIP-- 194 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhh--cCCEEEEeCcCcCCH--
Confidence 446999999999999999999999999999887421000 1111111111 12222222 346999999998632
Q ss_pred CCCCCCCCchHHHHHHHHHHHHhc---------cCCCCcEEEEeccCCC-----------CCCCccccCCCCcccccccC
Q 003525 598 GSSTGDAGGAADRVLNQLLTEMDG---------MNAKKTVFIIGATNRP-----------DIIDPALLRPGRLDQLIYIP 657 (813)
Q Consensus 598 ~~~~~~~~~~~~~vl~~lL~~ld~---------~~~~~~v~vi~aTn~~-----------~~ld~allr~gRf~~~i~~~ 657 (813)
.++..|...++. .....++.+|+|+|.+ ..|++|++. ||- .|+|+
T Consensus 195 ------------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~d 259 (383)
T PHA02244 195 ------------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFD 259 (383)
T ss_pred ------------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCC
Confidence 233334444431 1123578999999984 457899998 995 79999
Q ss_pred CCCHHHHHHHH
Q 003525 658 LPDEASRLQIF 668 (813)
Q Consensus 658 ~p~~~~r~~Il 668 (813)
.|+. .-..|.
T Consensus 260 yp~~-~E~~i~ 269 (383)
T PHA02244 260 YDEK-IEHLIS 269 (383)
T ss_pred CCcH-HHHHHh
Confidence 9984 333444
No 258
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.05 E-value=1.1e-09 Score=110.15 Aligned_cols=143 Identities=23% Similarity=0.295 Sum_probs=97.6
Q ss_pred CCceeeeecCCCCChhHHHHHHHHHhCCe------------------------EEEEeccchhhhcccccHHHHHHHHHH
Q 003525 521 PSKGVLFYGPPGCGKTLLAKAIANECQAN------------------------FISVKGPELLTMWFGESEANVREIFDK 576 (813)
Q Consensus 521 ~~~gilL~GppGtGKT~la~ala~~~~~~------------------------~i~v~~~~l~~~~vg~se~~i~~vF~~ 576 (813)
.+..+||+||+|+|||++|+.++..+... +..+.... .. -.-..++.+.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~--~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QS--IKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---Cc--CCHHHHHHHHHH
Confidence 44569999999999999999999886431 22221110 00 123456666665
Q ss_pred HHh----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCccc
Q 003525 577 ARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQ 652 (813)
Q Consensus 577 a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~ 652 (813)
+.. ....|+||||+|.+.. ...+.||..|+.. ....++|.+||.++.|.+++.+ |+.
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~--------------~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~~- 148 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNE--------------AAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RCQ- 148 (188)
T ss_pred HccCcccCCeEEEEEechhhhCH--------------HHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hcE-
Confidence 544 3457999999999732 3467788888863 3345566667777899999987 774
Q ss_pred ccccCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCC
Q 003525 653 LIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHG 692 (813)
Q Consensus 653 ~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g 692 (813)
++.|++|+.++..++++.. ++++ ..+..+++.+.|
T Consensus 149 ~~~~~~~~~~~~~~~l~~~----gi~~-~~~~~i~~~~~g 183 (188)
T TIGR00678 149 VLPFPPLSEEALLQWLIRQ----GISE-EAAELLLALAGG 183 (188)
T ss_pred EeeCCCCCHHHHHHHHHHc----CCCH-HHHHHHHHHcCC
Confidence 8999999999998888876 3432 335666665544
No 259
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.05 E-value=8.1e-09 Score=113.69 Aligned_cols=184 Identities=19% Similarity=0.183 Sum_probs=120.3
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeE-------------
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF------------- 550 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~------------- 550 (813)
...+++|.|++.+++.|.+.+.. -+.+..+||+||+|+||+++|.++|..+-..-
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 45788999999999999876553 13455799999999999999999998762100
Q ss_pred EEEe-------------ccchhhhcc---cc--------cHHHHHHHHHHH----HhCCCeEEEEecchhhhhccCCCCC
Q 003525 551 ISVK-------------GPELLTMWF---GE--------SEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSTG 602 (813)
Q Consensus 551 i~v~-------------~~~l~~~~v---g~--------se~~i~~vF~~a----~~~~p~il~iDEid~l~~~r~~~~~ 602 (813)
+.+. -+++.--.. +. .-..||++-+.+ ....+.|++|||+|.+-
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~-------- 154 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN-------- 154 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC--------
Confidence 0000 011110000 00 123355554443 34567899999999872
Q ss_pred CCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccc
Q 003525 603 DAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVD 682 (813)
Q Consensus 603 ~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d 682 (813)
....|.||..++.. ..+.++|.+|+.++.+.+.+.+ |+. .|.|++|+.++..+++...... ..+..
T Consensus 155 ------~~aanaLLK~LEep--p~~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~~~---~~~~~ 220 (365)
T PRK07471 155 ------ANAANALLKVLEEP--PARSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAGPD---LPDDP 220 (365)
T ss_pred ------HHHHHHHHHHHhcC--CCCeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhccc---CCHHH
Confidence 34678899988853 3456777788889888888876 885 8999999999998888875421 11222
Q ss_pred HHHHHHHcCCCCHHHHHHHH
Q 003525 683 LSALARYTHGFSGADITEVC 702 (813)
Q Consensus 683 ~~~la~~~~g~sg~di~~l~ 702 (813)
+..++..+.| |......++
T Consensus 221 ~~~l~~~s~G-sp~~Al~ll 239 (365)
T PRK07471 221 RAALAALAEG-SVGRALRLA 239 (365)
T ss_pred HHHHHHHcCC-CHHHHHHHh
Confidence 3456666655 444444444
No 260
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.05 E-value=6.7e-09 Score=118.53 Aligned_cols=183 Identities=20% Similarity=0.255 Sum_probs=118.9
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeE--------E
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--------F 278 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~--------v 278 (813)
.++.+..|+++.|++..++.++..+.. -..+..+||+||+|+||||+|+.+|..+++.- .
T Consensus 8 ~kyRP~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~ 75 (486)
T PRK14953 8 RKYRPKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGK 75 (486)
T ss_pred HhhCCCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCc
Confidence 356778999999999999999888863 02244689999999999999999999876310 1
Q ss_pred EEechhhhhh----------hcchhHHHHHHHHHHHHh----cCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhh
Q 003525 279 LINGPEIMSK----------LAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMD 344 (813)
Q Consensus 279 ~v~~~~l~~~----------~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 344 (813)
..+|..+.+. .....-..++.+...+.. ....|++|||+|.+.. ...+.|+..++
T Consensus 76 c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~-----------~a~naLLk~LE 144 (486)
T PRK14953 76 CENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK-----------EAFNALLKTLE 144 (486)
T ss_pred cHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH-----------HHHHHHHHHHh
Confidence 1112111110 001112334555444432 3446999999997742 23456777776
Q ss_pred ccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCCC
Q 003525 345 GLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 417 (813)
Q Consensus 345 ~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 417 (813)
... ..+++|.+|+.++.+.+++++ |+ ..+.+..++..+...++...++...+. ++..+..++..+.|-
T Consensus 145 epp--~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~ 213 (486)
T PRK14953 145 EPP--PRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGG 213 (486)
T ss_pred cCC--CCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 542 345555566777788888876 54 468899999999998888877655443 233466677666553
No 261
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=3.2e-09 Score=116.25 Aligned_cols=190 Identities=18% Similarity=0.179 Sum_probs=121.0
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCC-------eEEEE-e-
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISV-K- 554 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~-------~~i~v-~- 554 (813)
...++++.|++++++.|...+.. + +.+..+||+||+|+|||++|+.+|..+.. +.... .
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~-----------g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYRE-----------G-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHc-----------C-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 45788899999999988776543 1 33456999999999999999999988743 11000 0
Q ss_pred -------------ccchh--hhcccc---------cHHHHHHHHHH----HHhCCCeEEEEecchhhhhccCCCCCCCCc
Q 003525 555 -------------GPELL--TMWFGE---------SEANVREIFDK----ARQSAPCVLFFDELDSIATQRGSSTGDAGG 606 (813)
Q Consensus 555 -------------~~~l~--~~~vg~---------se~~i~~vF~~----a~~~~p~il~iDEid~l~~~r~~~~~~~~~ 606 (813)
.+++. ..-.++ +-..|+.+-+. +......|++|||+|.+-
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~------------ 154 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN------------ 154 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC------------
Confidence 01111 000000 01234443332 223455799999999983
Q ss_pred hHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcccHHHH
Q 003525 607 AADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSAL 686 (813)
Q Consensus 607 ~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~l 686 (813)
....|.||..|+... .+.++|..|+.|+.+.|.+.+ |+ ..+.|++|+.++..++++......+++ +..+..+
T Consensus 155 --~~aanaLLk~LEEpp--~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~~i 226 (351)
T PRK09112 155 --RNAANAILKTLEEPP--ARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITEAL 226 (351)
T ss_pred --HHHHHHHHHHHhcCC--CCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHHHH
Confidence 334678899998633 345555566778888888876 88 599999999999999998744322222 2225566
Q ss_pred HHHcCCCCHHHHHHHHHHHH
Q 003525 687 ARYTHGFSGADITEVCQRAC 706 (813)
Q Consensus 687 a~~~~g~sg~di~~l~~~a~ 706 (813)
++.+.| +.+...+++....
T Consensus 227 ~~~s~G-~pr~Al~ll~~~~ 245 (351)
T PRK09112 227 LQRSKG-SVRKALLLLNYGG 245 (351)
T ss_pred HHHcCC-CHHHHHHHHhcCc
Confidence 666554 5555555554443
No 262
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.04 E-value=7e-09 Score=113.27 Aligned_cols=177 Identities=23% Similarity=0.288 Sum_probs=114.8
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCC-----eEEEEe
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-----FFFLIN 281 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~-----~~v~v~ 281 (813)
+++.+.+|+++.|.+++++.++.++.. ....+++|+||||||||++++++++.+.. .++.++
T Consensus 9 ~kyrP~~~~~~~g~~~~~~~l~~~i~~-------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~ 75 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEIVERLKSYVKE-------------KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELN 75 (319)
T ss_pred hhhCCCcHHHhcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEec
Confidence 456778999999999999999888753 11235899999999999999999998732 344444
Q ss_pred chhhhhhhcchhHHHHHHHHHHHHh------cCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEE
Q 003525 282 GPEIMSKLAGESESNLRKAFEEAEK------NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVM 355 (813)
Q Consensus 282 ~~~l~~~~~g~~~~~l~~vf~~a~~------~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi 355 (813)
+.+..+ ...++..+..... ..+.++++||++.+... ....|...++..... ..+|
T Consensus 76 ~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~-----------~~~~L~~~le~~~~~--~~lI 136 (319)
T PRK00440 76 ASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD-----------AQQALRRTMEMYSQN--TRFI 136 (319)
T ss_pred cccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH-----------HHHHHHHHHhcCCCC--CeEE
Confidence 332111 1112222222211 22458999999887421 134566666654443 3444
Q ss_pred EecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcc-ccchhhHHHHhhcCCCc
Q 003525 356 GATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTHGYV 418 (813)
Q Consensus 356 ~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l-~~~~~l~~la~~t~g~~ 418 (813)
.+++.+..+.+.+++ |+. .++++.++.++...+++..+....+ .++..+..++..+.|..
T Consensus 137 l~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~ 197 (319)
T PRK00440 137 LSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDM 197 (319)
T ss_pred EEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 466766777677766 543 5899999999998888877765443 23445777777766543
No 263
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.04 E-value=9.6e-09 Score=116.55 Aligned_cols=176 Identities=19% Similarity=0.291 Sum_probs=119.0
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe----------
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~---------- 276 (813)
+++.+.+|++|.|.+..++.++..+... ..+..+||+||+|+|||++|+++|+.+...
T Consensus 9 ~kyRP~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~ 76 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCN 76 (451)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCc
Confidence 4567889999999999999998887631 235679999999999999999999987432
Q ss_pred ---------------EEEEechhhhhhhcchhHHHHHHHHHHH----HhcCCcEEEeccchhccCCCCCCchhHHHHHHH
Q 003525 277 ---------------FFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDELDSIAPKREKTHGEVERRIVS 337 (813)
Q Consensus 277 ---------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~ 337 (813)
++.+++... ..-..++.+.+.. ......++||||+|.+.. ...+
T Consensus 77 ~c~~C~~i~~~~~~d~~~i~g~~~------~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~-----------~~~n 139 (451)
T PRK06305 77 QCASCKEISSGTSLDVLEIDGASH------RGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK-----------EAFN 139 (451)
T ss_pred ccHHHHHHhcCCCCceEEeecccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH-----------HHHH
Confidence 222332111 0112333333222 224567999999998742 2346
Q ss_pred HHHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcc-ccchhhHHHHhhcCC
Q 003525 338 QLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTHG 416 (813)
Q Consensus 338 ~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l-~~~~~l~~la~~t~g 416 (813)
.|+..++... ..+++|.+|+.+..+.+.+++ |+ ..+++..++.++....+...++..++ .++..+..++..+.|
T Consensus 140 ~LLk~lEep~--~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 140 SLLKTLEEPP--QHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG 214 (451)
T ss_pred HHHHHhhcCC--CCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 7788887643 356666677888888888887 55 46899999998888887766544332 233456677766655
No 264
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.03 E-value=8.7e-09 Score=114.86 Aligned_cols=176 Identities=22% Similarity=0.286 Sum_probs=118.3
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeE---------
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--------- 277 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~--------- 277 (813)
+++.+.+|+++.|.+..++.+++.+... ..+.++|||||||+|||+++++++..+....
T Consensus 9 ~k~rP~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~ 76 (367)
T PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFS 76 (367)
T ss_pred HHHCCCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 4678889999999999999998888641 2356899999999999999999999875421
Q ss_pred ---EEEechhhhhhhcchhHHHHHHHHHHHHh----cCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCC
Q 003525 278 ---FLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRA 350 (813)
Q Consensus 278 ---v~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~ 350 (813)
+.+++. .......++.+++.+.. ....++++||++.+.. ...+.|+..++.. ..
T Consensus 77 ~~~~~l~~~------~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~-----------~~~~~ll~~le~~--~~ 137 (367)
T PRK14970 77 FNIFELDAA------SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS-----------AAFNAFLKTLEEP--PA 137 (367)
T ss_pred cceEEeccc------cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH-----------HHHHHHHHHHhCC--CC
Confidence 112211 11123456666665432 2346999999997742 1235566666543 22
Q ss_pred cEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcc-ccchhhHHHHhhcCC
Q 003525 351 HVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTHG 416 (813)
Q Consensus 351 ~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l-~~~~~l~~la~~t~g 416 (813)
..++|.+++.+..+.+++++ |+ ..+++..|+.++...++...+....+ .++..+..++..+.|
T Consensus 138 ~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g 201 (367)
T PRK14970 138 HAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG 201 (367)
T ss_pred ceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 34555566777888888876 44 35889999998888888766655443 233456666666544
No 265
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.03 E-value=4.9e-09 Score=122.52 Aligned_cols=177 Identities=20% Similarity=0.306 Sum_probs=121.2
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe----------
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~---------- 276 (813)
.++.+.+|++|.|.++.++.|+..+... ..+..+||+||+|+||||+++++|+.+.+.
T Consensus 8 ~k~RP~~f~~iiGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~ 75 (576)
T PRK14965 8 RKYRPQTFSDLTGQEHVSRTLQNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNV 75 (576)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCc
Confidence 3567889999999999999998887631 235568999999999999999999987532
Q ss_pred --------------EEEEechhhhhhhcchhHHHHHHHHHHHHh----cCCcEEEeccchhccCCCCCCchhHHHHHHHH
Q 003525 277 --------------FFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (813)
Q Consensus 277 --------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (813)
++.+++.. ...-..++.+...+.. ....|+||||+|.+.. ...+.
T Consensus 76 c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~-----------~a~na 138 (576)
T PRK14965 76 CPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST-----------NAFNA 138 (576)
T ss_pred cHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH-----------HHHHH
Confidence 22333221 1122345666555432 2235999999998742 23467
Q ss_pred HHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCCC
Q 003525 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 417 (813)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 417 (813)
|+..|+... ..+++|.+|+.++.|.+.+++ |. ..++|..++..+-...+...++...+. ++..+..++....|-
T Consensus 139 LLk~LEepp--~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~ 213 (576)
T PRK14965 139 LLKTLEEPP--PHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGS 213 (576)
T ss_pred HHHHHHcCC--CCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC
Confidence 888887543 356777778888999988886 44 457888888887777776655443332 334566777777663
No 266
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=2.7e-09 Score=116.11 Aligned_cols=170 Identities=19% Similarity=0.275 Sum_probs=115.0
Q ss_pred cccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCC--------eEEEEecc
Q 003525 485 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------NFISVKGP 556 (813)
Q Consensus 485 ~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~--------~~i~v~~~ 556 (813)
++|++|.|++.+++.|...+.. -+.+..+||+||+|+|||++|+++|..+.. .++.+...
T Consensus 1 m~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~ 68 (313)
T PRK05564 1 MSFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI 68 (313)
T ss_pred CChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc
Confidence 3689999999999988776532 133456899999999999999999997632 23333221
Q ss_pred chhhhcccccHHHHHHHHHH----HHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEe
Q 003525 557 ELLTMWFGESEANVREIFDK----ARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIG 632 (813)
Q Consensus 557 ~l~~~~vg~se~~i~~vF~~----a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~ 632 (813)
+ ++.+ +-..|+++-+. +......|++||++|.+- ....|.||..|+.. ..++++|.
T Consensus 69 ~--~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~--------------~~a~naLLK~LEep--p~~t~~il 128 (313)
T PRK05564 69 N--KKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT--------------EQAQNAFLKTIEEP--PKGVFIIL 128 (313)
T ss_pred c--CCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhcC--------------HHHHHHHHHHhcCC--CCCeEEEE
Confidence 0 0001 12345555553 333455799999998872 33568899999853 44556666
Q ss_pred ccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCC
Q 003525 633 ATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHG 692 (813)
Q Consensus 633 aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g 692 (813)
+|+.++.+-|.+.+ |.. +++|++|+.++....++..... ++ +..+..++....|
T Consensus 129 ~~~~~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~l~~~~~~--~~-~~~~~~l~~~~~g 182 (313)
T PRK05564 129 LCENLEQILDTIKS--RCQ-IYKLNRLSKEEIEKFISYKYND--IK-EEEKKSAIAFSDG 182 (313)
T ss_pred EeCChHhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHHhcC--CC-HHHHHHHHHHcCC
Confidence 66778888888887 885 8999999999888888765532 22 2335566666555
No 267
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.03 E-value=1e-10 Score=111.45 Aligned_cols=109 Identities=28% Similarity=0.387 Sum_probs=72.2
Q ss_pred eeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchh------hhccc---ccHHHHHHHHHHHHhCCCeEEEEecchhhh
Q 003525 524 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL------TMWFG---ESEANVREIFDKARQSAPCVLFFDELDSIA 594 (813)
Q Consensus 524 gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~------~~~vg---~se~~i~~vF~~a~~~~p~il~iDEid~l~ 594 (813)
+|+|+||||||||+|++.+|..++.+++.+.++... ..|.- ..+-.-..+.+..+ .++++|||||+..-
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccCC
Confidence 489999999999999999999999999888776532 22221 10000000011111 45899999998852
Q ss_pred hccCCCCCCCCchHHHHHHHHHHHHhccC-----------CCC------cEEEEeccCCCC----CCCccccCCCCc
Q 003525 595 TQRGSSTGDAGGAADRVLNQLLTEMDGMN-----------AKK------TVFIIGATNRPD----IIDPALLRPGRL 650 (813)
Q Consensus 595 ~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----------~~~------~v~vi~aTn~~~----~ld~allr~gRf 650 (813)
..+++.|+..++.-. ... ++.+|+|+|..+ .+++|+++ ||
T Consensus 79 --------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 --------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp --------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred --------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 457777777776521 011 389999999998 89999999 87
No 268
>PRK08727 hypothetical protein; Validated
Probab=99.03 E-value=1e-08 Score=106.59 Aligned_cols=149 Identities=25% Similarity=0.375 Sum_probs=95.6
Q ss_pred CceEEEECCCCCchHHHHHHHHHHh---CCeEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCC
Q 003525 249 PKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKRE 325 (813)
Q Consensus 249 ~~~vLL~GppGsGKTtLar~la~~l---~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~ 325 (813)
...++|+||+|||||+|+++++..+ +....+++..+.. ..+...++.. ....+|+|||++.+..+..
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~l--~~~dlLiIDDi~~l~~~~~ 110 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEAL--EGRSLVALDGLESIAGQRE 110 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHHH--hcCCEEEEeCcccccCChH
Confidence 3569999999999999999998764 4455666644432 2233344433 3446999999998864421
Q ss_pred CCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCC---CHHhhccCCc--ceEEEcCCCCHHHHHHHHHHHhc--C
Q 003525 326 KTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI---DPALRRFGRF--DREIDIGVPDEVGRLEILRIHTK--N 398 (813)
Q Consensus 326 ~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~l---d~~l~r~~Rf--~~~i~i~~p~~~~R~~Il~~~~~--~ 398 (813)
....++.+++....+..-+++.+...|..+ ++.+++ || ...+.++.|+.+++.+|++.++. +
T Consensus 111 ---------~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~ 179 (233)
T PRK08727 111 ---------DEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRG 179 (233)
T ss_pred ---------HHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcC
Confidence 112344455444333333444444566655 688887 65 56789999999999999997654 3
Q ss_pred CccccchhhHHHHhhcCCCch
Q 003525 399 MKLAEDVDLERVAKDTHGYVG 419 (813)
Q Consensus 399 ~~l~~~~~l~~la~~t~g~~~ 419 (813)
+.+. +..+..++....|-..
T Consensus 180 l~l~-~e~~~~La~~~~rd~r 199 (233)
T PRK08727 180 LALD-EAAIDWLLTHGERELA 199 (233)
T ss_pred CCCC-HHHHHHHHHhCCCCHH
Confidence 3333 3456778877765433
No 269
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.02 E-value=8.6e-09 Score=119.44 Aligned_cols=187 Identities=19% Similarity=0.270 Sum_probs=124.8
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe----------
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~---------- 276 (813)
.++.+.+|++|.|++..++.++..+... ..+..+||+||+|+||||+|+++|+.+...
T Consensus 8 ~kyRP~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~ 75 (563)
T PRK06647 8 TKRRPRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE 75 (563)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc
Confidence 3567889999999999999998888631 234569999999999999999999987542
Q ss_pred --------------EEEEechhhhhhhcchhHHHHHHHHHHH----HhcCCcEEEeccchhccCCCCCCchhHHHHHHHH
Q 003525 277 --------------FFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (813)
Q Consensus 277 --------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (813)
++.+++.. ...-..++.+.+.+ ......+++|||+|.+.. ...+.
T Consensus 76 C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~-----------~a~na 138 (563)
T PRK06647 76 CSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN-----------SAFNA 138 (563)
T ss_pred chHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH-----------HHHHH
Confidence 12222211 01123445554333 234456999999998742 23466
Q ss_pred HHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCCC
Q 003525 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 417 (813)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 417 (813)
|+..++.. ...+++|.+|+.+..+.+++++ |+ ..+++..++.++....++..+....+. ++..+..++....|-
T Consensus 139 LLK~LEep--p~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~Gd 213 (563)
T PRK06647 139 LLKTIEEP--PPYIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGS 213 (563)
T ss_pred HHHhhccC--CCCEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 77777743 3456777777778888888887 55 357899999988888887766444332 334566777776663
Q ss_pred chHHHHHHHHH
Q 003525 418 VGSDLAALCTE 428 (813)
Q Consensus 418 ~~~dl~~l~~~ 428 (813)
..++..++..
T Consensus 214 -lR~alslLdk 223 (563)
T PRK06647 214 -VRDAYTLFDQ 223 (563)
T ss_pred -HHHHHHHHHH
Confidence 3444444433
No 270
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.02 E-value=1.9e-08 Score=118.46 Aligned_cols=166 Identities=26% Similarity=0.467 Sum_probs=106.1
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHh----------CCeE
Q 003525 208 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFF 277 (813)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l----------~~~~ 277 (813)
.+.+.+|+++.|.+..++.+...+.. ..+.+++|+|||||||||+|+++.+.. +.++
T Consensus 147 ~~rp~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~f 213 (615)
T TIGR02903 147 LLRPRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPF 213 (615)
T ss_pred hcCcCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCe
Confidence 45567899999999999887666542 234579999999999999999998765 2457
Q ss_pred EEEechhhh-------hhhcchhHH----HHHHHHHH----------HHhcCCcEEEeccchhccCCCCCCchhHHHHHH
Q 003525 278 FLINGPEIM-------SKLAGESES----NLRKAFEE----------AEKNAPSIIFIDELDSIAPKREKTHGEVERRIV 336 (813)
Q Consensus 278 v~v~~~~l~-------~~~~g~~~~----~l~~vf~~----------a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~ 336 (813)
+.++|..+. ....+.... ..+..+.. .......+|||||++.+-.. ..
T Consensus 214 v~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~-----------~Q 282 (615)
T TIGR02903 214 VEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL-----------LQ 282 (615)
T ss_pred EEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH-----------HH
Confidence 889886542 011111100 00111110 01123469999998876422 22
Q ss_pred HHHHHHhhccc--------------------------cCCcEEEEE-ecCCCCCCCHHhhccCCcceEEEcCCCCHHHHH
Q 003525 337 SQLLTLMDGLK--------------------------SRAHVIVMG-ATNRPNSIDPALRRFGRFDREIDIGVPDEVGRL 389 (813)
Q Consensus 337 ~~Ll~~ld~~~--------------------------~~~~vivi~-atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~ 389 (813)
..|+..++.-. ....+++++ +++.+..+++++++ ||. .+.+++++.++..
T Consensus 283 ~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~ 359 (615)
T TIGR02903 283 NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHH
Confidence 33334432210 122355555 55668889999987 775 5788999999999
Q ss_pred HHHHHHhcCCc
Q 003525 390 EILRIHTKNMK 400 (813)
Q Consensus 390 ~Il~~~~~~~~ 400 (813)
.|++..+....
T Consensus 360 ~Il~~~a~~~~ 370 (615)
T TIGR02903 360 LIVLNAAEKIN 370 (615)
T ss_pred HHHHHHHHHcC
Confidence 99998776543
No 271
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.01 E-value=1.3e-09 Score=120.45 Aligned_cols=121 Identities=25% Similarity=0.490 Sum_probs=79.1
Q ss_pred CceeeeecCCCCChhHHHHHHHHHhCCe-------EEEEec----cchhhhc----cccc--HHHHHHHHHHHHhC--CC
Q 003525 522 SKGVLFYGPPGCGKTLLAKAIANECQAN-------FISVKG----PELLTMW----FGES--EANVREIFDKARQS--AP 582 (813)
Q Consensus 522 ~~gilL~GppGtGKT~la~ala~~~~~~-------~i~v~~----~~l~~~~----vg~s--e~~i~~vF~~a~~~--~p 582 (813)
.++++|+||||||||++|+.+|..+... ++.+.. .+++..+ +|-. .....++.+.|... .|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 5679999999999999999999887431 223322 2333222 1111 11233445666543 47
Q ss_pred eEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhc--------------------cCCCCcEEEEeccCCCC----
Q 003525 583 CVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDG--------------------MNAKKTVFIIGATNRPD---- 638 (813)
Q Consensus 583 ~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~--------------------~~~~~~v~vi~aTn~~~---- 638 (813)
+++|||||+... ..+++.++++.|+. +.-..++.||||+|..|
T Consensus 274 ~vliIDEINRan-------------i~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~ 340 (459)
T PRK11331 274 YVFIIDEINRAN-------------LSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLA 340 (459)
T ss_pred cEEEEehhhccC-------------HHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchh
Confidence 999999998853 24455555555542 22346899999999998
Q ss_pred CCCccccCCCCcccccccCC
Q 003525 639 IIDPALLRPGRLDQLIYIPL 658 (813)
Q Consensus 639 ~ld~allr~gRf~~~i~~~~ 658 (813)
.+|.||+| ||. .|.+.+
T Consensus 341 ~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 341 VVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred hccHHHHh--hhh-eEEecC
Confidence 79999999 996 455543
No 272
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.01 E-value=1.7e-09 Score=127.98 Aligned_cols=158 Identities=22% Similarity=0.334 Sum_probs=104.2
Q ss_pred ccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHh-------------------
Q 003525 486 SWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC------------------- 546 (813)
Q Consensus 486 ~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~------------------- 546 (813)
.|.+|.|++.++..|.-....+ ...|+||.|++|||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 4678999999987775433221 12469999999999999999999987
Q ss_pred ----------------CCeEEEEeccchhhhccccc--HHHHH---HHHHH--HHhCCCeEEEEecchhhhhccCCCCCC
Q 003525 547 ----------------QANFISVKGPELLTMWFGES--EANVR---EIFDK--ARQSAPCVLFFDELDSIATQRGSSTGD 603 (813)
Q Consensus 547 ----------------~~~~i~v~~~~l~~~~vg~s--e~~i~---~vF~~--a~~~~p~il~iDEid~l~~~r~~~~~~ 603 (813)
..+|+.+...-.....+|.. ++.+. ..|+. .....-.+||+|||+.+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~--------- 139 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLD--------- 139 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCC---------
Confidence 24566554433333333321 11110 01110 001122499999999973
Q ss_pred CCchHHHHHHHHHHHHhccC-----------CCCcEEEEeccCCC-CCCCccccCCCCcccccccCCCC-HHHHHHHHHH
Q 003525 604 AGGAADRVLNQLLTEMDGMN-----------AKKTVFIIGATNRP-DIIDPALLRPGRLDQLIYIPLPD-EASRLQIFKA 670 (813)
Q Consensus 604 ~~~~~~~vl~~lL~~ld~~~-----------~~~~v~vi~aTn~~-~~ld~allr~gRf~~~i~~~~p~-~~~r~~Il~~ 670 (813)
..+++.||..|+... ...+++||+|+|.. ..+.++|+. ||+.+|.++.+. .+++.+|++.
T Consensus 140 -----~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 140 -----DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred -----HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 457788888886321 12468999999954 357889998 999999998774 6788888876
Q ss_pred Hh
Q 003525 671 CL 672 (813)
Q Consensus 671 ~l 672 (813)
.+
T Consensus 213 ~~ 214 (633)
T TIGR02442 213 RL 214 (633)
T ss_pred HH
Confidence 54
No 273
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.01 E-value=1.8e-08 Score=120.27 Aligned_cols=133 Identities=26% Similarity=0.324 Sum_probs=88.9
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhh------hhhc----chhHHHHHHHHHHHHhcCCcEEEeccc
Q 003525 248 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM------SKLA----GESESNLRKAFEEAEKNAPSIIFIDEL 317 (813)
Q Consensus 248 ~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~------~~~~----g~~~~~l~~vf~~a~~~~p~il~iDEi 317 (813)
....+||.||..||||+++..+|.+.+..|+.||..+-. +.|+ |...-+-+.+....+.. -.+++||+
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G--yWIVLDEL 964 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG--YWIVLDEL 964 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC--cEEEeecc
Confidence 345699999999999999999999999999999986542 2222 21222223333333333 47899998
Q ss_pred hhccCCCCCCchhHHHHHHHHHHHHhhccc------------cCCcEEEEEecCCCC------CCCHHhhccCCcceEEE
Q 003525 318 DSIAPKREKTHGEVERRIVSQLLTLMDGLK------------SRAHVIVMGATNRPN------SIDPALRRFGRFDREID 379 (813)
Q Consensus 318 d~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~------------~~~~vivi~atn~~~------~ld~~l~r~~Rf~~~i~ 379 (813)
...+ ..+.+.|..++|.-+ .++.+.+.+|.|+|- .+..++|. || .+++
T Consensus 965 NLAp-----------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE~h 1030 (4600)
T COG5271 965 NLAP-----------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LEMH 1030 (4600)
T ss_pred ccCc-----------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-Hhhh
Confidence 7543 236677778887533 345677788888774 44566665 77 4466
Q ss_pred cCCCCHHHHHHHHHHHh
Q 003525 380 IGVPDEVGRLEILRIHT 396 (813)
Q Consensus 380 i~~p~~~~R~~Il~~~~ 396 (813)
|..-.+.+...||...+
T Consensus 1031 FddipedEle~ILh~rc 1047 (4600)
T COG5271 1031 FDDIPEDELEEILHGRC 1047 (4600)
T ss_pred cccCcHHHHHHHHhccC
Confidence 66666777777776433
No 274
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.8e-08 Score=110.74 Aligned_cols=201 Identities=22% Similarity=0.327 Sum_probs=128.5
Q ss_pred cccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe-----EEEEechhhhhhh-
Q 003525 216 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-----FFLINGPEIMSKL- 289 (813)
Q Consensus 216 ~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~-----~v~v~~~~l~~~~- 289 (813)
.+.+.+.+++++...+.-.+.. ..|.+++++|+||||||+.++.++.++... +++|||....+.+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 3888899999998776543322 345679999999999999999999988543 7999996542211
Q ss_pred --------------cchh-HHHHHHHHHHHHh-cCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEE
Q 003525 290 --------------AGES-ESNLRKAFEEAEK-NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVI 353 (813)
Q Consensus 290 --------------~g~~-~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vi 353 (813)
.|.. .+....+.+.... ....|+++||+|.|..+.+ .++..|....+.. ..++.
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~--~~~v~ 158 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGEN--KVKVS 158 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcccc--ceeEE
Confidence 1111 2223333333333 3456889999999987653 3455566555544 56788
Q ss_pred EEEecCCCC---CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCC---ccccchhhHHHH---hhcCCCchHHHHH
Q 003525 354 VMGATNRPN---SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNM---KLAEDVDLERVA---KDTHGYVGSDLAA 424 (813)
Q Consensus 354 vi~atn~~~---~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~---~l~~~~~l~~la---~~t~g~~~~dl~~ 424 (813)
+|+.+|..+ .+|+.+.+... ..+|.|++.+..+...|+....+.. ...++.-++.++ ...+| ...-...
T Consensus 159 vi~i~n~~~~~~~ld~rv~s~l~-~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~aid 236 (366)
T COG1474 159 IIAVSNDDKFLDYLDPRVKSSLG-PSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARKAID 236 (366)
T ss_pred EEEEeccHHHHHHhhhhhhhccC-cceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHHHHH
Confidence 999998764 66777776322 2458999999999999999765532 112222233333 33344 2223345
Q ss_pred HHHHHHHHHHHhh
Q 003525 425 LCTEAALQCIREK 437 (813)
Q Consensus 425 l~~~a~~~~~~~~ 437 (813)
+|+.|+..+-++.
T Consensus 237 ilr~A~eiAe~~~ 249 (366)
T COG1474 237 ILRRAGEIAEREG 249 (366)
T ss_pred HHHHHHHHHHhhC
Confidence 6666666555443
No 275
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.00 E-value=7.1e-09 Score=114.00 Aligned_cols=30 Identities=33% Similarity=0.525 Sum_probs=26.5
Q ss_pred hCCCCCceEEEECCCCCchHHHHHHHHHHh
Q 003525 244 IGVKPPKGILLYGPPGSGKTLIARAVANET 273 (813)
Q Consensus 244 l~i~~~~~vLL~GppGsGKTtLar~la~~l 273 (813)
|.+.+++.+.|+||+||||||+++++++..
T Consensus 96 ~El~~g~rygLiG~nG~Gkst~L~~i~~~e 125 (614)
T KOG0927|consen 96 LELNRGRRYGLIGPNGSGKSTFLRAIAGRE 125 (614)
T ss_pred EEecCCceEEEEcCCCCcHhHHHHHHhcCC
Confidence 456789999999999999999999999763
No 276
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.2e-09 Score=125.22 Aligned_cols=147 Identities=23% Similarity=0.376 Sum_probs=112.1
Q ss_pred CCCceeeeecCCCCChhHHHHHHHHHh----------CCeEEEEeccchh--hhcccccHHHHHHHHHHHHhCCCeEEEE
Q 003525 520 SPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELL--TMWFGESEANVREIFDKARQSAPCVLFF 587 (813)
Q Consensus 520 ~~~~gilL~GppGtGKT~la~ala~~~----------~~~~i~v~~~~l~--~~~vg~se~~i~~vF~~a~~~~p~il~i 587 (813)
+..++-+|+|+||+|||.++..+|... +...+.++...+. .+|-|+.|..++.+.+...+..+.||||
T Consensus 189 R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFI 268 (786)
T COG0542 189 RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFI 268 (786)
T ss_pred cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEE
Confidence 444567999999999999999999875 3456777777776 4799999999999999999988999999
Q ss_pred ecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCC-----CCCccccCCCCcccccccCCCCHH
Q 003525 588 DELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD-----IIDPALLRPGRLDQLIYIPLPDEA 662 (813)
Q Consensus 588 DEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~-----~ld~allr~gRf~~~i~~~~p~~~ 662 (813)
|||+.+.+..+..++ ....-|-|--.| ..+.+-+||||..-+ .-|+||-| ||. .|++..|+.+
T Consensus 269 DEiHtiVGAG~~~G~-----a~DAaNiLKPaL----ARGeL~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e 336 (786)
T COG0542 269 DEIHTIVGAGATEGG-----AMDAANLLKPAL----ARGELRCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVE 336 (786)
T ss_pred echhhhcCCCccccc-----ccchhhhhHHHH----hcCCeEEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHH
Confidence 999999886432211 111223333333 255677888886543 35899999 997 8999999999
Q ss_pred HHHHHHHHHhccCCCC
Q 003525 663 SRLQIFKACLRKSPIS 678 (813)
Q Consensus 663 ~r~~Il~~~l~~~~~~ 678 (813)
+-..||+..-.++...
T Consensus 337 ~ti~ILrGlk~~yE~h 352 (786)
T COG0542 337 DTIAILRGLKERYEAH 352 (786)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999998777655443
No 277
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.98 E-value=1.9e-08 Score=114.88 Aligned_cols=189 Identities=19% Similarity=0.213 Sum_probs=125.4
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCC-----------
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA----------- 275 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~----------- 275 (813)
+++.+.+|+++.|.+..++.++..+.. + .-+..+||+||+|+|||++|+++++.+..
T Consensus 6 ~KyRP~~fdeiiGqe~v~~~L~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~ 73 (535)
T PRK08451 6 LKYRPKHFDELIGQESVSKTLSLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDT 73 (535)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 456788999999999999999888753 1 23456799999999999999999998732
Q ss_pred -------------eEEEEechhhhhhhcchhHHHHHHHHHHHHh----cCCcEEEeccchhccCCCCCCchhHHHHHHHH
Q 003525 276 -------------FFFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (813)
Q Consensus 276 -------------~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (813)
.++.+++.+ ...-..++.+...... ....|++|||+|.+.. ...+.
T Consensus 74 C~~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~-----------~A~NA 136 (535)
T PRK08451 74 CIQCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK-----------EAFNA 136 (535)
T ss_pred cHHHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHH
Confidence 122222211 0112445555544321 2235899999988742 24567
Q ss_pred HHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCCC
Q 003525 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 417 (813)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 417 (813)
|+..++.... .+.+|.+|+.+..+.+.+++ |. ..+++..++..+-...+...+...++. ++..+..++....|
T Consensus 137 LLK~LEEpp~--~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G- 210 (535)
T PRK08451 137 LLKTLEEPPS--YVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG- 210 (535)
T ss_pred HHHHHhhcCC--ceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 7888876533 45555566778899999988 63 578999999888887777665543332 33456777776665
Q ss_pred chHHHHHHHHHHH
Q 003525 418 VGSDLAALCTEAA 430 (813)
Q Consensus 418 ~~~dl~~l~~~a~ 430 (813)
..+++..++..+.
T Consensus 211 dlR~alnlLdqai 223 (535)
T PRK08451 211 SLRDTLTLLDQAI 223 (535)
T ss_pred cHHHHHHHHHHHH
Confidence 4445555554443
No 278
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.98 E-value=6.2e-09 Score=117.72 Aligned_cols=171 Identities=25% Similarity=0.346 Sum_probs=113.1
Q ss_pred CCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhhhcccccHHHHHHHHHHH----HhCCCeEEEEecchhhhh
Q 003525 520 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIAT 595 (813)
Q Consensus 520 ~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~~~vg~se~~i~~vF~~a----~~~~p~il~iDEid~l~~ 595 (813)
++.+-+||+||||-||||||+.+|+.+|...+.|++++=.+. ......|..+.+.- ....|.+|++||||.-.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~- 400 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP- 400 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCCc-
Confidence 334458999999999999999999999999999999885321 11122333333221 12568999999998732
Q ss_pred ccCCCCCCCCchHHHHHHHHHHHHh-------ccCCC------------CcEEEEeccCCCCCCCccccCCCCccccccc
Q 003525 596 QRGSSTGDAGGAADRVLNQLLTEMD-------GMNAK------------KTVFIIGATNRPDIIDPALLRPGRLDQLIYI 656 (813)
Q Consensus 596 ~r~~~~~~~~~~~~~vl~~lL~~ld-------~~~~~------------~~v~vi~aTn~~~~ld~allr~gRf~~~i~~ 656 (813)
...++.+|..+. |-... =.--|||.+|. ..-|||.----|-.+|+|
T Consensus 401 -------------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr~~A~ii~f 465 (877)
T KOG1969|consen 401 -------------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLRPFAEIIAF 465 (877)
T ss_pred -------------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcccceEEEEe
Confidence 234444444443 11110 01347888885 345776311147789999
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 003525 657 PLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGFSGADITEVCQRACKYAIRE 712 (813)
Q Consensus 657 ~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~~~g~sg~di~~l~~~a~~~a~~~ 712 (813)
++|......+=|+..+.+.++.-+ .-+..|++.+. .||+..++....++...
T Consensus 466 ~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~----~DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 466 VPPSQSRLVERLNEICHRENMRADSKALNALCELTQ----NDIRSCINTLQFLASNV 518 (877)
T ss_pred cCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhc----chHHHHHHHHHHHHHhc
Confidence 999998888888888877665522 12455555544 59999999988888764
No 279
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.98 E-value=1e-08 Score=101.91 Aligned_cols=194 Identities=23% Similarity=0.352 Sum_probs=131.5
Q ss_pred cccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhC---CeEEEEecc
Q 003525 480 VEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGP 556 (813)
Q Consensus 480 ~~~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~---~~~i~v~~~ 556 (813)
...+.+...++.|.+..|+.|.+.... |.. | .+..++||+|.-|||||+|+||+-++.. ...+.|+-.
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~-------F~~-G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~ 122 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQ-------FAE-G-LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKE 122 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHH-------HHc-C-CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHH
Confidence 345568899999999999998664332 222 2 3456799999999999999999998874 457777777
Q ss_pred chhhhcccccHHHHHHHHHHHHhCC-CeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccC--CCCcEEEEec
Q 003525 557 ELLTMWFGESEANVREIFDKARQSA-PCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN--AKKTVFIIGA 633 (813)
Q Consensus 557 ~l~~~~vg~se~~i~~vF~~a~~~~-p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~--~~~~v~vi~a 633 (813)
++.. +-.+++..+... .-|||.|++-.= + + +.-...|-..|||.- ...+|+|.+|
T Consensus 123 dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe---------~-g---d~~yK~LKs~LeG~ve~rP~NVl~YAT 180 (287)
T COG2607 123 DLAT---------LPDLVELLRARPEKFILFCDDLSFE---------E-G---DDAYKALKSALEGGVEGRPANVLFYAT 180 (287)
T ss_pred HHhh---------HHHHHHHHhcCCceEEEEecCCCCC---------C-C---chHHHHHHHHhcCCcccCCCeEEEEEe
Confidence 6642 334444444432 359999997441 1 1 223455556677753 3568999999
Q ss_pred cCCCCCCCc--------------------cccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcc-cHHHH----HH
Q 003525 634 TNRPDIIDP--------------------ALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSAL----AR 688 (813)
Q Consensus 634 Tn~~~~ld~--------------------allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-d~~~l----a~ 688 (813)
+||...|.. .+--+.||...+.|++++.++-.+|+..++++++++-+. .+..- |.
T Consensus 181 SNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt 260 (287)
T COG2607 181 SNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWAT 260 (287)
T ss_pred cCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 999765431 111124999999999999999999999999998887532 22222 23
Q ss_pred HcCCCCHHHHHHHHHH
Q 003525 689 YTHGFSGADITEVCQR 704 (813)
Q Consensus 689 ~~~g~sg~di~~l~~~ 704 (813)
...|-||+--.+.++.
T Consensus 261 ~rg~RSGR~A~QF~~~ 276 (287)
T COG2607 261 TRGGRSGRVAWQFIRD 276 (287)
T ss_pred hcCCCccHhHHHHHHH
Confidence 3456777765554444
No 280
>PRK05642 DNA replication initiation factor; Validated
Probab=98.97 E-value=1.8e-08 Score=104.76 Aligned_cols=147 Identities=18% Similarity=0.302 Sum_probs=99.3
Q ss_pred CceEEEECCCCCchHHHHHHHHHHh---CCeEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCC
Q 003525 249 PKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKRE 325 (813)
Q Consensus 249 ~~~vLL~GppGsGKTtLar~la~~l---~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~ 325 (813)
...++|+||+|||||+|++++++++ +..+++++..++.... ..+++... ...+|+|||++.+..+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~--~~d~LiiDDi~~~~~~~- 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLE--QYELVCLDDLDVIAGKA- 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhh--hCCEEEEechhhhcCCh-
Confidence 3679999999999999999998764 4567888877765421 12222222 23589999999875432
Q ss_pred CCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCC---CHHhhccCCc--ceEEEcCCCCHHHHHHHHHHHhcC--
Q 003525 326 KTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI---DPALRRFGRF--DREIDIGVPDEVGRLEILRIHTKN-- 398 (813)
Q Consensus 326 ~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~l---d~~l~r~~Rf--~~~i~i~~p~~~~R~~Il~~~~~~-- 398 (813)
.....|..+++.....+..++++++..|..+ .+.+++ || ...+.+..|+.+.+.++++..+..
T Consensus 114 --------~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 114 --------DWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred --------HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 1224566677666665667777777666433 577777 55 466788999999999999855443
Q ss_pred CccccchhhHHHHhhcCCC
Q 003525 399 MKLAEDVDLERVAKDTHGY 417 (813)
Q Consensus 399 ~~l~~~~~l~~la~~t~g~ 417 (813)
+.+. +..++.++....+-
T Consensus 184 ~~l~-~ev~~~L~~~~~~d 201 (234)
T PRK05642 184 LHLT-DEVGHFILTRGTRS 201 (234)
T ss_pred CCCC-HHHHHHHHHhcCCC
Confidence 3333 34566777666554
No 281
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.97 E-value=7.1e-09 Score=110.37 Aligned_cols=190 Identities=19% Similarity=0.260 Sum_probs=113.3
Q ss_pred eeeeecCCCCChhHHHHHHHHHhCC-eEE--EEecc-----chhh---hccccc-----H-HHHHHHH----HHHHhCCC
Q 003525 524 GVLFYGPPGCGKTLLAKAIANECQA-NFI--SVKGP-----ELLT---MWFGES-----E-ANVREIF----DKARQSAP 582 (813)
Q Consensus 524 gilL~GppGtGKT~la~ala~~~~~-~~i--~v~~~-----~l~~---~~vg~s-----e-~~i~~vF----~~a~~~~p 582 (813)
-++|+||+|+||||+++.++..+.. .+. .+..+ +++. ...|.. . ...+.+. .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 3889999999999999999998763 222 11111 1110 111211 1 1112222 22334567
Q ss_pred eEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCC---CCC-c---cccCCCCcccccc
Q 003525 583 CVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD---IID-P---ALLRPGRLDQLIY 655 (813)
Q Consensus 583 ~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~---~ld-~---allr~gRf~~~i~ 655 (813)
.++++||++.+.. .....+..+... .......+.|..+..|+ .+. + .+.+ |+...++
T Consensus 125 ~vliiDe~~~l~~-----------~~~~~l~~l~~~---~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~ 188 (269)
T TIGR03015 125 ALLVVDEAQNLTP-----------ELLEELRMLSNF---QTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCH 188 (269)
T ss_pred eEEEEECcccCCH-----------HHHHHHHHHhCc---ccCCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeee
Confidence 8999999998632 111222222211 11122222222223332 222 2 2344 7788899
Q ss_pred cCCCCHHHHHHHHHHHhccCCCC-----CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCcc
Q 003525 656 IPLPDEASRLQIFKACLRKSPIS-----PDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERERRKMENPEA 730 (813)
Q Consensus 656 ~~~p~~~~r~~Il~~~l~~~~~~-----~~~d~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~ 730 (813)
+++.+.++..+++...++..+.. .+..++.|++.+.|.. +.|..+|..+...|..+.
T Consensus 189 l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~----------------- 250 (269)
T TIGR03015 189 LGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEE----------------- 250 (269)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcC-----------------
Confidence 99999999999999888654321 2334778888888875 559999999988877643
Q ss_pred cccccccccccccHHHHHHHHhhcc
Q 003525 731 MEEDEVDDVDEIKAVHFEESMKYAR 755 (813)
Q Consensus 731 ~~~~~~~~~~~i~~~~f~~a~~~~~ 755 (813)
...|+.++++.++..+.
T Consensus 251 --------~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 251 --------KREIGGEEVREVIAEID 267 (269)
T ss_pred --------CCCCCHHHHHHHHHHhh
Confidence 23699999999987754
No 282
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.96 E-value=2.6e-08 Score=116.01 Aligned_cols=193 Identities=19% Similarity=0.183 Sum_probs=126.4
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEe-----
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLIN----- 281 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~----- 281 (813)
.++.+-+|++|.|.+..++.|+.++.. -..+..+||+||+|+||||+|+++|+.+.+.....+
T Consensus 16 ~KyRP~~f~dliGq~~~v~~L~~~~~~------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~ 83 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVRTLTNAFET------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI 83 (598)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc
Confidence 456788999999999999999888763 123567999999999999999999998864321111
Q ss_pred --------chhhhhhh----------cchhHHHHHHHHHHHHh----cCCcEEEeccchhccCCCCCCchhHHHHHHHHH
Q 003525 282 --------GPEIMSKL----------AGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQL 339 (813)
Q Consensus 282 --------~~~l~~~~----------~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 339 (813)
|..+.... ....-..++.+++.+.. ....|+||||+|.+.. ...+.|
T Consensus 84 ~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-----------~a~naL 152 (598)
T PRK09111 84 DLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-----------AAFNAL 152 (598)
T ss_pred ccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-----------HHHHHH
Confidence 11111100 00123456666665532 2346999999998842 234677
Q ss_pred HHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCCCc
Q 003525 340 LTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYV 418 (813)
Q Consensus 340 l~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 418 (813)
+..|+.... .+++|.+|+.++.+.+.+++ |. ..+++..++..+....+...++...+. ++..+..++..+.|.
T Consensus 153 LKtLEePp~--~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gd- 226 (598)
T PRK09111 153 LKTLEEPPP--HVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGS- 226 (598)
T ss_pred HHHHHhCCC--CeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-
Confidence 777775433 45555566777778888876 54 568999999988888887766544332 234566677776664
Q ss_pred hHHHHHHHHH
Q 003525 419 GSDLAALCTE 428 (813)
Q Consensus 419 ~~dl~~l~~~ 428 (813)
..++..++..
T Consensus 227 lr~al~~Ldk 236 (598)
T PRK09111 227 VRDGLSLLDQ 236 (598)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 283
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.96 E-value=2.5e-08 Score=116.92 Aligned_cols=184 Identities=19% Similarity=0.247 Sum_probs=119.9
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEE----E--
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFL----I-- 280 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~----v-- 280 (813)
+++.+..|+++.|.+..++.|+.++..- .-+..+||+||+|+|||++|+++|+.+.+.... -
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~C 75 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPC 75 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCC
Confidence 4567789999999999999998888641 123579999999999999999999998652100 0
Q ss_pred -ech---hh--------h--hhhcchhHHHHHHHHHHHHh----cCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHH
Q 003525 281 -NGP---EI--------M--SKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTL 342 (813)
Q Consensus 281 -~~~---~l--------~--~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ 342 (813)
.|. .+ . ..........++.++..+.. ....|+||||+|.+.. ...+.|+..
T Consensus 76 g~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~-----------~a~naLLK~ 144 (620)
T PRK14948 76 GKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST-----------AAFNALLKT 144 (620)
T ss_pred cccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH-----------HHHHHHHHH
Confidence 010 00 0 01112334567777766542 2336999999998732 234677888
Q ss_pred hhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCCCc
Q 003525 343 MDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYV 418 (813)
Q Consensus 343 ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 418 (813)
++... ..+++|++|+++..+.+.+++ |+ ..++|..+..++-...+...+.+..+. +...+..++..+.|..
T Consensus 145 LEePp--~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~l 216 (620)
T PRK14948 145 LEEPP--PRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGL 216 (620)
T ss_pred HhcCC--cCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCH
Confidence 87532 356677777888888888887 54 457888887777666665544432221 2234667777766643
No 284
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.96 E-value=1.1e-08 Score=114.84 Aligned_cols=177 Identities=16% Similarity=0.232 Sum_probs=113.7
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe----------
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~---------- 276 (813)
+++.+.+|++|.|++..++.|+.++.. + ..+..+||+||+|+||||+|+++|+.+...
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~ 75 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQ 75 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccc
Confidence 467788999999999999999888763 1 234569999999999999999999988642
Q ss_pred ----------------------EEEEechhhhhhhcchhHHHHHHHHHHHH----hcCCcEEEeccchhccCCCCCCchh
Q 003525 277 ----------------------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGE 330 (813)
Q Consensus 277 ----------------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~ 330 (813)
++.+++.. ......++.+.+.+. .....++||||+|.+..
T Consensus 76 ~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~------~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~-------- 141 (397)
T PRK14955 76 EVTEPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI-------- 141 (397)
T ss_pred cCCCCCCCCHHHHHHhcCCCCCeEeecccc------cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH--------
Confidence 11111110 011344555544442 22335999999998842
Q ss_pred HHHHHHHHHHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcc-ccchhhHH
Q 003525 331 VERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLER 409 (813)
Q Consensus 331 ~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l-~~~~~l~~ 409 (813)
...+.|+..++... ...++|.+++.+..+.+.+++ |. ..+++..++..+-...+...++...+ .++..+..
T Consensus 142 ---~~~~~LLk~LEep~--~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~ 213 (397)
T PRK14955 142 ---AAFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQL 213 (397)
T ss_pred ---HHHHHHHHHHhcCC--CCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 12345666666432 244555556667777777776 43 35788888888777777765543332 23334666
Q ss_pred HHhhcCCC
Q 003525 410 VAKDTHGY 417 (813)
Q Consensus 410 la~~t~g~ 417 (813)
++..+.|.
T Consensus 214 l~~~s~g~ 221 (397)
T PRK14955 214 IGRKAQGS 221 (397)
T ss_pred HHHHcCCC
Confidence 66666653
No 285
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.95 E-value=3.1e-08 Score=115.52 Aligned_cols=185 Identities=16% Similarity=0.230 Sum_probs=118.8
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEE--------
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFF-------- 278 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v-------- 278 (813)
.++.+.+|++|.|++..++.|+.++... .-+..+||+||+|+||||+|+++|+.+.+..-
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~ 75 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQ 75 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccc
Confidence 4567889999999999999998877530 23456999999999999999999999865210
Q ss_pred ---E-----Eechhhhh-------hhcc---hhHHHHHHHHHHH----HhcCCcEEEeccchhccCCCCCCchhHHHHHH
Q 003525 279 ---L-----INGPEIMS-------KLAG---ESESNLRKAFEEA----EKNAPSIIFIDELDSIAPKREKTHGEVERRIV 336 (813)
Q Consensus 279 ---~-----v~~~~l~~-------~~~g---~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~ 336 (813)
. -.|..+.. ...+ .....++.+.+.. ......+++|||+|.+.. ...
T Consensus 76 ~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~-----------~a~ 144 (620)
T PRK14954 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST-----------AAF 144 (620)
T ss_pred ccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH-----------HHH
Confidence 0 00111100 0001 1134455554444 223346999999988842 124
Q ss_pred HHHHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcc-ccchhhHHHHhhcC
Q 003525 337 SQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTH 415 (813)
Q Consensus 337 ~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l-~~~~~l~~la~~t~ 415 (813)
+.|+..++.... .+++|.+|+.+..+.+.+++ |. ..+++..++..+-...+...++...+ .++..+..++..+.
T Consensus 145 naLLK~LEePp~--~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~ 219 (620)
T PRK14954 145 NAFLKTLEEPPP--HAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQ 219 (620)
T ss_pred HHHHHHHhCCCC--CeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 567777775433 35555566677888888876 43 56899999888877777665543332 23445677777776
Q ss_pred CCch
Q 003525 416 GYVG 419 (813)
Q Consensus 416 g~~~ 419 (813)
|..+
T Consensus 220 Gdlr 223 (620)
T PRK14954 220 GSMR 223 (620)
T ss_pred CCHH
Confidence 6433
No 286
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.94 E-value=1.9e-09 Score=128.21 Aligned_cols=32 Identities=25% Similarity=0.435 Sum_probs=28.5
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~ 274 (813)
++.+.++..+.|+||+|||||||+++|++.+.
T Consensus 21 s~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~ 52 (638)
T PRK10636 21 TATINPGQKVGLVGKNGCGKSTLLALLKNEIS 52 (638)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45678899999999999999999999999763
No 287
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.93 E-value=2.1e-09 Score=114.61 Aligned_cols=137 Identities=15% Similarity=0.201 Sum_probs=94.6
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhhh--hcchhHHHH----------HHHHHHHHhcCCcEEEe
Q 003525 247 KPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSK--LAGESESNL----------RKAFEEAEKNAPSIIFI 314 (813)
Q Consensus 247 ~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~~--~~g~~~~~l----------~~vf~~a~~~~p~il~i 314 (813)
..+++|+|.||||||||++++.||..++.+++.|++...+.. ..|...-.+ ...+-.|. ..+.++++
T Consensus 62 ~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illl 140 (327)
T TIGR01650 62 AYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCF 140 (327)
T ss_pred hcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEe
Confidence 346789999999999999999999999999999988655432 233211000 11122232 34678999
Q ss_pred ccchhccCCCCCCchhHHHHHHHHHHHHhhc------------cccCCcEEEEEecCCCC------------CCCHHhhc
Q 003525 315 DELDSIAPKREKTHGEVERRIVSQLLTLMDG------------LKSRAHVIVMGATNRPN------------SIDPALRR 370 (813)
Q Consensus 315 DEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~------------~~~~~~vivi~atn~~~------------~ld~~l~r 370 (813)
||++..-+. +...|..+++. +..+..+.+|+|.|..+ .+++++..
T Consensus 141 DEin~a~p~-----------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD 209 (327)
T TIGR01650 141 DEYDAGRPD-----------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD 209 (327)
T ss_pred chhhccCHH-----------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh
Confidence 999987432 23444444441 22345688999999864 34677776
Q ss_pred cCCcceEEEcCCCCHHHHHHHHHHHhc
Q 003525 371 FGRFDREIDIGVPDEVGRLEILRIHTK 397 (813)
Q Consensus 371 ~~Rf~~~i~i~~p~~~~R~~Il~~~~~ 397 (813)
||...+.+..|+.+.-.+|+.....
T Consensus 210 --RF~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 210 --RWSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred --heeeEeeCCCCCHHHHHHHHHhhcc
Confidence 8988889999999999999876543
No 288
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.93 E-value=1.4e-08 Score=115.24 Aligned_cols=166 Identities=17% Similarity=0.277 Sum_probs=106.3
Q ss_pred ceEEEECCCCCchHHHHHHHHHHh-----CCeEEEEechhhhhhhcchhHH---HHHHHHHHHHhcCCcEEEeccchhcc
Q 003525 250 KGILLYGPPGSGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESES---NLRKAFEEAEKNAPSIIFIDELDSIA 321 (813)
Q Consensus 250 ~~vLL~GppGsGKTtLar~la~~l-----~~~~v~v~~~~l~~~~~g~~~~---~l~~vf~~a~~~~p~il~iDEid~l~ 321 (813)
.+++|+|++|+|||+|++++++.+ +..++++++.++...+...... .+....+. -..+.+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEecccccc
Confidence 469999999999999999999865 3567889988877654433221 11111111 1356799999999885
Q ss_pred CCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCC---CCCHHhhccCCc--ceEEEcCCCCHHHHHHHHHHHh
Q 003525 322 PKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN---SIDPALRRFGRF--DREIDIGVPDEVGRLEILRIHT 396 (813)
Q Consensus 322 ~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~---~ld~~l~r~~Rf--~~~i~i~~p~~~~R~~Il~~~~ 396 (813)
.+. ...+.|..+++........+|+.+...|. .+++.+++ || ...+.+..|+.++|.+|++..+
T Consensus 220 ~k~---------~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~ 288 (450)
T PRK14087 220 YKE---------KTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEI 288 (450)
T ss_pred CCH---------HHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHH
Confidence 432 12344555555544444445554444444 34677777 65 4667899999999999999887
Q ss_pred cCCcc---ccchhhHHHHhhcCCCchHHHHHHHHHH
Q 003525 397 KNMKL---AEDVDLERVAKDTHGYVGSDLAALCTEA 429 (813)
Q Consensus 397 ~~~~l---~~~~~l~~la~~t~g~~~~dl~~l~~~a 429 (813)
+...+ .++..+..++....|-. +.+..++...
T Consensus 289 ~~~gl~~~l~~evl~~Ia~~~~gd~-R~L~gaL~~l 323 (450)
T PRK14087 289 KNQNIKQEVTEEAINFISNYYSDDV-RKIKGSVSRL 323 (450)
T ss_pred HhcCCCCCCCHHHHHHHHHccCCCH-HHHHHHHHHH
Confidence 65332 33445677877777643 3344444443
No 289
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.93 E-value=5.7e-10 Score=110.98 Aligned_cols=142 Identities=28% Similarity=0.421 Sum_probs=66.1
Q ss_pred cccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCe----------EEEEec-
Q 003525 487 WEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN----------FISVKG- 555 (813)
Q Consensus 487 ~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~----------~i~v~~- 555 (813)
|.+|.|++.+|..|.-... | ..++||+||||||||++|+.+...+-.- ..++.+
T Consensus 2 f~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred hhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 6789999999998864432 2 3579999999999999999999876210 000111
Q ss_pred ---------cchhhhcccccHHHH-H-------HHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHH
Q 003525 556 ---------PELLTMWFGESEANV-R-------EIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTE 618 (813)
Q Consensus 556 ---------~~l~~~~vg~se~~i-~-------~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ 618 (813)
.-+.......+...+ . -.+..|.. .|||+||+-.+ .+++++.|++-
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~---GVLflDE~~ef--------------~~~vld~Lr~p 129 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHR---GVLFLDELNEF--------------DRSVLDALRQP 129 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTT---SEEEECETTTS---------------HHHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcC---CEEEechhhhc--------------CHHHHHHHHHH
Confidence 000000000011000 0 01122322 49999998664 46799999999
Q ss_pred HhccC-----------CCCcEEEEeccCCC-----------------------CCCCccccCCCCcccccccCCCCHH
Q 003525 619 MDGMN-----------AKKTVFIIGATNRP-----------------------DIIDPALLRPGRLDQLIYIPLPDEA 662 (813)
Q Consensus 619 ld~~~-----------~~~~v~vi~aTn~~-----------------------~~ld~allr~gRf~~~i~~~~p~~~ 662 (813)
|+... ...++++|+|+|.= ..|...++. |||..|.++..+.+
T Consensus 130 le~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 130 LEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSYE 205 (206)
T ss_dssp HHHSBEEEEETTEEEEEB--EEEEEEE-S-------------------------------------------------
T ss_pred HHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--cccccccccccccC
Confidence 87532 12367899999841 235667776 89988888876654
No 290
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=4.4e-09 Score=113.60 Aligned_cols=183 Identities=17% Similarity=0.257 Sum_probs=122.1
Q ss_pred ccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCe----------EEEEec
Q 003525 486 SWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN----------FISVKG 555 (813)
Q Consensus 486 ~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~----------~i~v~~ 555 (813)
.|++|.|++.+++.|...+... +.+..+||+||+|+||+++|.++|..+-.. +...+-
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 5889999999999998876531 335679999999999999999999885211 111122
Q ss_pred cchhhh---c--ccc--------------------cHHHHHHHHHHHH----hCCCeEEEEecchhhhhccCCCCCCCCc
Q 003525 556 PELLTM---W--FGE--------------------SEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSTGDAGG 606 (813)
Q Consensus 556 ~~l~~~---~--vg~--------------------se~~i~~vF~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~ 606 (813)
||+.-- | -|. .-..++++-+.+. .....|++||++|.+.
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------ 137 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN------------ 137 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC------------
Confidence 222200 0 011 0124566655543 3446799999999873
Q ss_pred hHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCcccHHHH
Q 003525 607 AADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSAL 686 (813)
Q Consensus 607 ~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~l 686 (813)
....|.||..|+..+ + .++|..|+.++.|-|.+.+ |.. ++.|++|+.++..++++......... .+...+
T Consensus 138 --~~aaNaLLK~LEEPp--~-~~fILi~~~~~~Ll~TI~S--Rcq-~i~f~~l~~~~~~~~L~~~~~~~~~~--~~~~~l 207 (314)
T PRK07399 138 --EAAANALLKTLEEPG--N-GTLILIAPSPESLLPTIVS--RCQ-IIPFYRLSDEQLEQVLKRLGDEEILN--INFPEL 207 (314)
T ss_pred --HHHHHHHHHHHhCCC--C-CeEEEEECChHhCcHHHHh--hce-EEecCCCCHHHHHHHHHHhhccccch--hHHHHH
Confidence 345688999998654 3 3566677788999999987 884 89999999999999998765322211 224677
Q ss_pred HHHcCCCCHHHHHHHHH
Q 003525 687 ARYTHGFSGADITEVCQ 703 (813)
Q Consensus 687 a~~~~g~sg~di~~l~~ 703 (813)
+....| +.+...++++
T Consensus 208 ~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 208 LALAQG-SPGAAIANIE 223 (314)
T ss_pred HHHcCC-CHHHHHHHHH
Confidence 776665 4444444444
No 291
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=1.6e-08 Score=109.81 Aligned_cols=147 Identities=20% Similarity=0.285 Sum_probs=101.4
Q ss_pred CCceeeeecCCCCChhHHHHHHHHHhCC------------------------eEEEEeccchhhhcccccHHHHHHHHHH
Q 003525 521 PSKGVLFYGPPGCGKTLLAKAIANECQA------------------------NFISVKGPELLTMWFGESEANVREIFDK 576 (813)
Q Consensus 521 ~~~gilL~GppGtGKT~la~ala~~~~~------------------------~~i~v~~~~l~~~~vg~se~~i~~vF~~ 576 (813)
.+..+||+||+|+|||++|+++|..+.. .++.+...+- ++. -+-..||++-+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~~--i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DKT--IKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CCC--CCHHHHHHHHHH
Confidence 4556999999999999999999988632 2233322110 000 122455555554
Q ss_pred HH----hCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCccc
Q 003525 577 AR----QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQ 652 (813)
Q Consensus 577 a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~ 652 (813)
+. .....|++||++|.+- ....|.||..|+.. ..++++|.+|+.++.|-|.+++ |+.
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~--------------~~aaNaLLK~LEEP--p~~~~fiL~t~~~~~ll~TI~S--Rc~- 158 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMN--------------RNAANALLKSLEEP--SGDTVLLLISHQPSRLLPTIKS--RCQ- 158 (328)
T ss_pred HhhccccCCCeEEEECChhhCC--------------HHHHHHHHHHHhCC--CCCeEEEEEECChhhCcHHHHh--hce-
Confidence 43 3456799999999973 34679999999863 4578888999999999999998 986
Q ss_pred ccccCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCC
Q 003525 653 LIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHG 692 (813)
Q Consensus 653 ~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g 692 (813)
.+.|++|+.++..+.++..... ..+.+...++....|
T Consensus 159 ~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~G 195 (328)
T PRK05707 159 QQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGG 195 (328)
T ss_pred eeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCC
Confidence 5999999999888888765411 122334455555555
No 292
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.92 E-value=5.9e-09 Score=98.24 Aligned_cols=128 Identities=36% Similarity=0.505 Sum_probs=79.6
Q ss_pred CceEEEECCCCCchHHHHHHHHHHhCCe---EEEEechhhhhh--------------hcchhHHHHHHHHHHHHhcCCcE
Q 003525 249 PKGILLYGPPGSGKTLIARAVANETGAF---FFLINGPEIMSK--------------LAGESESNLRKAFEEAEKNAPSI 311 (813)
Q Consensus 249 ~~~vLL~GppGsGKTtLar~la~~l~~~---~v~v~~~~l~~~--------------~~g~~~~~l~~vf~~a~~~~p~i 311 (813)
+.+++|+|||||||||+++.++..+... ++.+++...... .........+.+++.+....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 5689999999999999999999998765 777776543221 11234556678888888877899
Q ss_pred EEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCC-CCCCCHHhhccCCcceEEEcCCC
Q 003525 312 IFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNR-PNSIDPALRRFGRFDREIDIGVP 383 (813)
Q Consensus 312 l~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~-~~~ld~~l~r~~Rf~~~i~i~~p 383 (813)
+++||++.+......... ...................+|+++|. ....+..+++ |++..+.+..+
T Consensus 82 iiiDei~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEALL-----LLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHHHH-----HhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 999999988654311000 00000001111122345677777775 3334444554 67777666543
No 293
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=3.9e-08 Score=115.58 Aligned_cols=176 Identities=19% Similarity=0.268 Sum_probs=116.0
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeE---------
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--------- 277 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~--------- 277 (813)
+++.+.+|++|.|.++.++.|+.++... ..+..+||+||+|+||||+++++|+.+.+..
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~ 75 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG 75 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 4677889999999999999998877531 2245689999999999999999999875321
Q ss_pred ----------------EEEechhhhhhhcchhHHHHHHHHHHHHh----cCCcEEEeccchhccCCCCCCchhHHHHHHH
Q 003525 278 ----------------FLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVS 337 (813)
Q Consensus 278 ----------------v~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~ 337 (813)
+.+++.. ......++.+.+.+.. ....|+||||+|.+.. ...+
T Consensus 76 ~c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-----------~a~n 138 (585)
T PRK14950 76 TCEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-----------AAFN 138 (585)
T ss_pred cCHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-----------HHHH
Confidence 1112110 1112334544443322 2346999999998742 2345
Q ss_pred HHHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcc-ccchhhHHHHhhcCC
Q 003525 338 QLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTHG 416 (813)
Q Consensus 338 ~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l-~~~~~l~~la~~t~g 416 (813)
.|+..++... ..+++|.+++..+.+.+.+++ |+ ..++|..++..+...++...+....+ .++..+..++..+.|
T Consensus 139 aLLk~LEepp--~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G 213 (585)
T PRK14950 139 ALLKTLEEPP--PHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG 213 (585)
T ss_pred HHHHHHhcCC--CCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 6777777543 345555566777777777776 44 45789889888888887766554433 233346677766665
No 294
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.91 E-value=3.2e-08 Score=98.53 Aligned_cols=168 Identities=22% Similarity=0.312 Sum_probs=118.6
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHh---CCeEEEEechh
Q 003525 208 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPE 284 (813)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l---~~~~v~v~~~~ 284 (813)
.++.+.+.+|.|++.+++.+.+-... |- .-.|..+|||+|..|||||+|+|++-++. +...+.|+-.+
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~-------F~--~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQ-------FA--EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHH-------HH--cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 45678889999999999988544332 11 12467889999999999999999998887 45678888777
Q ss_pred hhhhhcchhHHHHHHHHHHHHh-cCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhcc-cc-CCcEEEEEecCCC
Q 003525 285 IMSKLAGESESNLRKAFEEAEK-NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGL-KS-RAHVIVMGATNRP 361 (813)
Q Consensus 285 l~~~~~g~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~-~~-~~~vivi~atn~~ 361 (813)
+.. +-.++...+. ...-|||+|++-+=- + ..-...|...|+|- .. ..+|++.+|+|+.
T Consensus 124 l~~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe~-------g---d~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 124 LAT---------LPDLVELLRARPEKFILFCDDLSFEE-------G---DDAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred Hhh---------HHHHHHHHhcCCceEEEEecCCCCCC-------C---chHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 642 2334444333 345699999965421 1 12345667777653 33 3578888999987
Q ss_pred CCCCHHh--------------------hccCCcceEEEcCCCCHHHHHHHHHHHhcCCcccc
Q 003525 362 NSIDPAL--------------------RRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAE 403 (813)
Q Consensus 362 ~~ld~~l--------------------~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~ 403 (813)
+.++..+ .-..||...+.|.+++.++-+.|+..+.+...+.-
T Consensus 185 HLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 185 HLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred ccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 6654322 12368999999999999999999998887776643
No 295
>PRK04132 replication factor C small subunit; Provisional
Probab=98.90 E-value=1.9e-08 Score=119.96 Aligned_cols=155 Identities=17% Similarity=0.196 Sum_probs=113.7
Q ss_pred eeeec--CCCCChhHHHHHHHHHh-----CCeEEEEeccchhhhcccccHHHHHHHHHHHHhC------CCeEEEEecch
Q 003525 525 VLFYG--PPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQS------APCVLFFDELD 591 (813)
Q Consensus 525 ilL~G--ppGtGKT~la~ala~~~-----~~~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~------~p~il~iDEid 591 (813)
-+..| |++.||||+|+++|+++ +.+++.+++++..+ -..|+++.+.+... ...|+||||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 45567 99999999999999997 56799999987532 23566555543322 23699999999
Q ss_pred hhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHH
Q 003525 592 SIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKAC 671 (813)
Q Consensus 592 ~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~ 671 (813)
.+- ....+.|+..|+.. ..++.+|++||.++.+-+++.+ |+. .+.|++|+.++....++..
T Consensus 641 ~Lt--------------~~AQnALLk~lEep--~~~~~FILi~N~~~kIi~tIrS--RC~-~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 641 ALT--------------QDAQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred cCC--------------HHHHHHHHHHhhCC--CCCeEEEEEeCChhhCchHHhh--hce-EEeCCCCCHHHHHHHHHHH
Confidence 983 23568889988854 4577888999999999999987 884 8999999999999999988
Q ss_pred hccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHH
Q 003525 672 LRKSPIS-PDVDLSALARYTHGFSGADITEVCQRA 705 (813)
Q Consensus 672 l~~~~~~-~~~d~~~la~~~~g~sg~di~~l~~~a 705 (813)
+++.++. ++..+..++..+.| +.+...++++.+
T Consensus 702 ~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~ 735 (846)
T PRK04132 702 AENEGLELTEEGLQAILYIAEG-DMRRAINILQAA 735 (846)
T ss_pred HHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 8765554 23457777877665 334444444443
No 296
>PHA02244 ATPase-like protein
Probab=98.89 E-value=4.5e-08 Score=105.54 Aligned_cols=122 Identities=25% Similarity=0.361 Sum_probs=79.0
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhhhhcch--hHHHH--HHHHHHHHhcCCcEEEeccchhccCC
Q 003525 248 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGE--SESNL--RKAFEEAEKNAPSIIFIDELDSIAPK 323 (813)
Q Consensus 248 ~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~~~~g~--~~~~l--~~vf~~a~~~~p~il~iDEid~l~~~ 323 (813)
.+.+|+|+||||||||+||+++|..++.+++.+++..-.....|. ....+ ..++... ....+++|||++.+.+.
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~--~~GgvLiLDEId~a~p~ 195 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF--KKGGLFFIDEIDASIPE 195 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh--hcCCEEEEeCcCcCCHH
Confidence 467899999999999999999999999999988853111111110 00011 1222222 34579999999977532
Q ss_pred CCCCchhHHHHHHHHHHHHhh---------ccccCCcEEEEEecCCC-----------CCCCHHhhccCCcceEEEcCCC
Q 003525 324 REKTHGEVERRIVSQLLTLMD---------GLKSRAHVIVMGATNRP-----------NSIDPALRRFGRFDREIDIGVP 383 (813)
Q Consensus 324 ~~~~~~~~~~~v~~~Ll~~ld---------~~~~~~~vivi~atn~~-----------~~ld~~l~r~~Rf~~~i~i~~p 383 (813)
+...|...++ .+..+.++.+|+|+|.+ ..++++++. ||. .+++..|
T Consensus 196 -----------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp 261 (383)
T PHA02244 196 -----------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYD 261 (383)
T ss_pred -----------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCC
Confidence 2233444443 12234678889999973 467888887 884 5889998
Q ss_pred CH
Q 003525 384 DE 385 (813)
Q Consensus 384 ~~ 385 (813)
..
T Consensus 262 ~~ 263 (383)
T PHA02244 262 EK 263 (383)
T ss_pred cH
Confidence 74
No 297
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.88 E-value=3.6e-08 Score=117.88 Aligned_cols=137 Identities=21% Similarity=0.259 Sum_probs=90.5
Q ss_pred CCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchh------hhcc-cccHH--H-HHHHHHHHHhCCCeEEEEe
Q 003525 519 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL------TMWF-GESEA--N-VREIFDKARQSAPCVLFFD 588 (813)
Q Consensus 519 ~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~------~~~v-g~se~--~-i~~vF~~a~~~~p~il~iD 588 (813)
++..+++||.|.||+|||.|+.++|+..|...++++.++-. +.++ ++... . ...-|-.|.+.. .-+++|
T Consensus 1540 mqv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G-~WVlLD 1618 (4600)
T COG5271 1540 MQVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG-GWVLLD 1618 (4600)
T ss_pred HhcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC-CEEEee
Confidence 34567899999999999999999999999999999876542 2221 11000 0 112233333322 478899
Q ss_pred cchhhhhccCCCCCCCCchHHHHHHHHHHHHhcc------------CCCCcEEEEeccCCCC------CCCccccCCCCc
Q 003525 589 ELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGM------------NAKKTVFIIGATNRPD------IIDPALLRPGRL 650 (813)
Q Consensus 589 Eid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~------------~~~~~v~vi~aTn~~~------~ld~allr~gRf 650 (813)
|+.-- ...|+.-|=..||.- ....+..|+||-|.-+ .|+..++. ||
T Consensus 1619 EiNLa--------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RF 1682 (4600)
T COG5271 1619 EINLA--------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RF 1682 (4600)
T ss_pred hhhhh--------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hh
Confidence 98652 233454444444432 1234677888888654 48889998 99
Q ss_pred ccccccCCCCHHHHHHHHHHHhc
Q 003525 651 DQLIYIPLPDEASRLQIFKACLR 673 (813)
Q Consensus 651 ~~~i~~~~p~~~~r~~Il~~~l~ 673 (813)
. +|++..++.+....|......
T Consensus 1683 s-vV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1683 S-VVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred h-eEEecccccchHHHHHHhhCC
Confidence 6 888888888877777776554
No 298
>PRK06620 hypothetical protein; Validated
Probab=98.88 E-value=3.8e-08 Score=100.66 Aligned_cols=134 Identities=16% Similarity=0.282 Sum_probs=88.1
Q ss_pred ceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCch
Q 003525 250 KGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHG 329 (813)
Q Consensus 250 ~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~ 329 (813)
..++||||||||||+|++++++..+..+ +..... . . .. .....+++||||+.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~--~~~~~~-----~--~----~~-----~~~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYI--IKDIFF-----N--E----EI-----LEKYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEE--cchhhh-----c--h----hH-----HhcCCEEEEeccccch--------
Confidence 6799999999999999999998876532 221110 0 0 11 1234689999999441
Q ss_pred hHHHHHHHHHHHHhhccccCCcEEEEEecCCCCC--CCHHhhccCCcc--eEEEcCCCCHHHHHHHHHHHhcC--Ccccc
Q 003525 330 EVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNS--IDPALRRFGRFD--REIDIGVPDEVGRLEILRIHTKN--MKLAE 403 (813)
Q Consensus 330 ~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~--ld~~l~r~~Rf~--~~i~i~~p~~~~R~~Il~~~~~~--~~l~~ 403 (813)
. ..|..+++.+...+..++++++..|.. + +.+++ |+. ..+.+..|+.+.+..+++..... +.+.
T Consensus 99 ---~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~- 168 (214)
T PRK06620 99 ---E---PALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTIS- 168 (214)
T ss_pred ---H---HHHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCC-
Confidence 0 234455555555566777777766654 4 67777 553 46899999999999999877653 3333
Q ss_pred chhhHHHHhhcCCCch
Q 003525 404 DVDLERVAKDTHGYVG 419 (813)
Q Consensus 404 ~~~l~~la~~t~g~~~ 419 (813)
+..+..++....+-..
T Consensus 169 ~ev~~~L~~~~~~d~r 184 (214)
T PRK06620 169 RQIIDFLLVNLPREYS 184 (214)
T ss_pred HHHHHHHHHHccCCHH
Confidence 3456777777665443
No 299
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.87 E-value=1e-08 Score=112.31 Aligned_cols=126 Identities=29% Similarity=0.417 Sum_probs=90.9
Q ss_pred ceeeeecCCCCChhHHHHHHHHHhC------------------------CeEEEEeccchhhhcccccHHHHHHHHHHHH
Q 003525 523 KGVLFYGPPGCGKTLLAKAIANECQ------------------------ANFISVKGPELLTMWFGESEANVREIFDKAR 578 (813)
Q Consensus 523 ~gilL~GppGtGKT~la~ala~~~~------------------------~~~i~v~~~~l~~~~vg~se~~i~~vF~~a~ 578 (813)
..+||+||||+|||++|.++|+.+. ..++.++.++....- -....|+.+-+...
T Consensus 25 halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~ 102 (325)
T COG0470 25 HALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFLS 102 (325)
T ss_pred ceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHhc
Confidence 3599999999999999999999986 467777777654321 12334554444432
Q ss_pred h----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCccccc
Q 003525 579 Q----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLI 654 (813)
Q Consensus 579 ~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i 654 (813)
. ....|++|||+|.+-. ...+.++..|+. ...+..+|.+||.++.+-+-+.+ |.. .+
T Consensus 103 ~~~~~~~~kviiidead~mt~--------------~A~nallk~lEe--p~~~~~~il~~n~~~~il~tI~S--Rc~-~i 163 (325)
T COG0470 103 ESPLEGGYKVVIIDEADKLTE--------------DAANALLKTLEE--PPKNTRFILITNDPSKILPTIRS--RCQ-RI 163 (325)
T ss_pred cCCCCCCceEEEeCcHHHHhH--------------HHHHHHHHHhcc--CCCCeEEEEEcCChhhccchhhh--cce-ee
Confidence 2 3457999999999843 456888888874 45577888899999988887776 875 78
Q ss_pred ccCCCCHHHHHHHHH
Q 003525 655 YIPLPDEASRLQIFK 669 (813)
Q Consensus 655 ~~~~p~~~~r~~Il~ 669 (813)
.|++|+...+....+
T Consensus 164 ~f~~~~~~~~i~~~e 178 (325)
T COG0470 164 RFKPPSRLEAIAWLE 178 (325)
T ss_pred ecCCchHHHHHHHhh
Confidence 888766655544444
No 300
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.86 E-value=1.3e-08 Score=119.21 Aligned_cols=55 Identities=27% Similarity=0.496 Sum_probs=44.9
Q ss_pred cccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCe
Q 003525 480 VEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN 549 (813)
Q Consensus 480 ~~~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~ 549 (813)
+..|..-|+++.|+++++..+...+.. .++++|+||||||||+++++++..+...
T Consensus 10 ~~~~~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 10 IPVPERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred cCcchhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 346677899999999999887765442 2379999999999999999999998654
No 301
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.85 E-value=8.4e-09 Score=109.87 Aligned_cols=66 Identities=33% Similarity=0.540 Sum_probs=45.3
Q ss_pred cccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhC--CeEEEEeccchhh
Q 003525 487 WEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLT 560 (813)
Q Consensus 487 ~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~--~~~i~v~~~~l~~ 560 (813)
-+.++|+.++++..--.+.. . +.+.-..+++||.||||||||.||-++|.+++ .||+.++++++++
T Consensus 23 ~~GlVGQ~~AReAagiiv~m-------I-k~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDM-------I-KEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHH-------H-HTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred cccccChHHHHHHHHHHHHH-------H-hcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence 45678888887765433221 1 11344567899999999999999999999997 7899999998864
No 302
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.85 E-value=1.9e-08 Score=113.37 Aligned_cols=195 Identities=22% Similarity=0.265 Sum_probs=131.2
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeE--------EE
Q 003525 208 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--------FL 279 (813)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~--------v~ 279 (813)
++.+..|+++.|.+...+.|+..+..- .-...+||.||.|+||||+||.+|+.+++.. ..
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C 76 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKC 76 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhh
Confidence 457789999999999999999988751 2245689999999999999999999886542 11
Q ss_pred Eechhhhhh----------hcchhHHHHHHHHHHHH----hcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhc
Q 003525 280 INGPEIMSK----------LAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDG 345 (813)
Q Consensus 280 v~~~~l~~~----------~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~ 345 (813)
..|..+... -...+-..+|.+.+.+. ....-|.+|||+|.|.. ...+.|+..+++
T Consensus 77 ~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~-----------~afNALLKTLEE 145 (515)
T COG2812 77 ISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK-----------QAFNALLKTLEE 145 (515)
T ss_pred hhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH-----------HHHHHHhccccc
Confidence 112222111 11123345667666653 33456999999998852 345666666664
Q ss_pred cccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcccc-chhhHHHHhhcCCCchHHHHH
Q 003525 346 LKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAE-DVDLERVAKDTHGYVGSDLAA 424 (813)
Q Consensus 346 ~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~-~~~l~~la~~t~g~~~~dl~~ 424 (813)
- ...|++|.+|..++.+++.+.+ |. +.+.|...+.+.-...|...+.+-.+.. +.-+..++...+| +.+|...
T Consensus 146 P--P~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDals 219 (515)
T COG2812 146 P--PSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALS 219 (515)
T ss_pred C--ccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHH
Confidence 3 3478888899999999998876 43 3356777777777777777666555543 3345666666665 4456666
Q ss_pred HHHHHHH
Q 003525 425 LCTEAAL 431 (813)
Q Consensus 425 l~~~a~~ 431 (813)
++..+..
T Consensus 220 lLDq~i~ 226 (515)
T COG2812 220 LLDQAIA 226 (515)
T ss_pred HHHHHHH
Confidence 6665543
No 303
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.83 E-value=1.1e-08 Score=118.89 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=28.5
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~ 274 (813)
++.+.+++.+.|+||+|||||||+++|++.+.
T Consensus 25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (506)
T PRK13549 25 SLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP 56 (506)
T ss_pred eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44567899999999999999999999999875
No 304
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.83 E-value=1.3e-08 Score=110.22 Aligned_cols=159 Identities=24% Similarity=0.421 Sum_probs=98.9
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCC-ceEEEECCCCCchHHHHHHHHHHhCCe---------EEE
Q 003525 210 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPP-KGILLYGPPGSGKTLIARAVANETGAF---------FFL 279 (813)
Q Consensus 210 ~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~-~~vLL~GppGsGKTtLar~la~~l~~~---------~v~ 279 (813)
.+..|++|.|+++.+..+.-..- .++ .++||.|+||+||||+++++++.++.. +..
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~--------------~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~ 68 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAI--------------DPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSAR 68 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHh--------------ccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCc
Confidence 45678999999998887643221 123 579999999999999999999998421 111
Q ss_pred Eec-hhh--------hhh---------------hcch--hHHHH---HHHHHHHH--hcCCcEEEeccchhccCCCCCCc
Q 003525 280 ING-PEI--------MSK---------------LAGE--SESNL---RKAFEEAE--KNAPSIIFIDELDSIAPKREKTH 328 (813)
Q Consensus 280 v~~-~~l--------~~~---------------~~g~--~~~~l---~~vf~~a~--~~~p~il~iDEid~l~~~~~~~~ 328 (813)
+.+ ++. ... ..|. ....+ ..+|+.-. .....+||+||++.+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~------ 142 (334)
T PRK13407 69 PEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED------ 142 (334)
T ss_pred ccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH------
Confidence 110 000 000 1110 00000 00111100 01124899999998743
Q ss_pred hhHHHHHHHHHHHHhhccc-----------cCCcEEEEEecCCCC-CCCHHhhccCCcceEEEcCCCCH-HHHHHHHHHH
Q 003525 329 GEVERRIVSQLLTLMDGLK-----------SRAHVIVMGATNRPN-SIDPALRRFGRFDREIDIGVPDE-VGRLEILRIH 395 (813)
Q Consensus 329 ~~~~~~v~~~Ll~~ld~~~-----------~~~~vivi~atn~~~-~ld~~l~r~~Rf~~~i~i~~p~~-~~R~~Il~~~ 395 (813)
.+.+.|+..|+.-. ...++++++++|..+ .+++++.. ||...+.++.|.. ++|.+|+...
T Consensus 143 -----~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 143 -----HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred -----HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHh
Confidence 34566777775321 234688888888755 57888877 8998999998876 8889998764
No 305
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.82 E-value=7.2e-09 Score=123.48 Aligned_cols=32 Identities=19% Similarity=0.383 Sum_probs=28.4
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~ 274 (813)
+|.+.++..+.|+||+|||||||+++|++...
T Consensus 23 s~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~ 54 (635)
T PRK11147 23 ELHIEDNERVCLVGRNGAGKSTLMKILNGEVL 54 (635)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 35578899999999999999999999999864
No 306
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=1.1e-08 Score=111.70 Aligned_cols=149 Identities=20% Similarity=0.213 Sum_probs=103.5
Q ss_pred ccccccc-cchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCC----------------
Q 003525 486 SWEDIGG-LDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---------------- 548 (813)
Q Consensus 486 ~~~~i~g-~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~---------------- 548 (813)
.|+.|.| ++.+++.|...+.. -+.+..+||+||+|+|||++|+++|..+-.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4777776 88888888776542 134556899999999999999999988632
Q ss_pred --------eEEEEeccchhhhcccccHHHHHHHHHHHH----hCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHH
Q 003525 549 --------NFISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLL 616 (813)
Q Consensus 549 --------~~i~v~~~~l~~~~vg~se~~i~~vF~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL 616 (813)
.+..+... +.. -.-..|+++-+.+. .....|++|||+|.+- ....|.||
T Consensus 71 ~~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~--------------~~a~NaLL 131 (329)
T PRK08058 71 RIDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT--------------ASAANSLL 131 (329)
T ss_pred HHhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC--------------HHHHHHHH
Confidence 12222111 000 01234555554433 2345699999998872 34678999
Q ss_pred HHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHH
Q 003525 617 TEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKA 670 (813)
Q Consensus 617 ~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~ 670 (813)
..|+.. .+.+++|.+|+.++.|-|.+.+ |.. +++|++|+.++..++++.
T Consensus 132 K~LEEP--p~~~~~Il~t~~~~~ll~TIrS--Rc~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 132 KFLEEP--SGGTTAILLTENKHQILPTILS--RCQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHhcCC--CCCceEEEEeCChHhCcHHHHh--hce-eeeCCCCCHHHHHHHHHH
Confidence 999853 4566777788888888899887 885 899999999887777763
No 307
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.81 E-value=2.8e-09 Score=101.54 Aligned_cols=109 Identities=26% Similarity=0.410 Sum_probs=68.9
Q ss_pred eEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhh------hhhcc---hhHHHHHHHHHHHHhcCCcEEEeccchhcc
Q 003525 251 GILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM------SKLAG---ESESNLRKAFEEAEKNAPSIIFIDELDSIA 321 (813)
Q Consensus 251 ~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~------~~~~g---~~~~~l~~vf~~a~~~~p~il~iDEid~l~ 321 (813)
+|+|+||||||||+|++.+|..++..++.++++... +.+.- .....-..+.+.. ..+.++||||++..-
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~--~~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM--RKGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH--HEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc--cceeEEEECCcccCC
Confidence 589999999999999999999999999888876532 11110 0000000000011 146899999998653
Q ss_pred CCCCCCchhHHHHHHHHHHHHhhccc-----------cCC------cEEEEEecCCCC----CCCHHhhccCCc
Q 003525 322 PKREKTHGEVERRIVSQLLTLMDGLK-----------SRA------HVIVMGATNRPN----SIDPALRRFGRF 374 (813)
Q Consensus 322 ~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~------~vivi~atn~~~----~ld~~l~r~~Rf 374 (813)
..+...|+.+++.-. ... ++.+|+|+|+.. .+++++++ ||
T Consensus 79 -----------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 -----------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred -----------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 235556666665321 111 389999999988 88999988 65
No 308
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.80 E-value=1.4e-07 Score=103.47 Aligned_cols=157 Identities=22% Similarity=0.391 Sum_probs=105.0
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHh-----CCeEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccC
Q 003525 248 PPKGILLYGPPGSGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAP 322 (813)
Q Consensus 248 ~~~~vLL~GppGsGKTtLar~la~~l-----~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~ 322 (813)
+...++||||.|+|||+|++++++.. +..++++...+++..+.......-..-|.+-. .-.+++||+++++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 34569999999999999999999886 23567777776665554443333334455544 456899999999986
Q ss_pred CCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCC---CHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcC-
Q 003525 323 KREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEILRIHTKN- 398 (813)
Q Consensus 323 ~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~l---d~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~- 398 (813)
+.. ....+...+..+...++-+++.+-..|..+ .+.|++.......+.+.+|+.+.|..||+.....
T Consensus 190 k~~---------~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~ 260 (408)
T COG0593 190 KER---------TQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDR 260 (408)
T ss_pred Chh---------HHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhc
Confidence 632 234455555555555555666665566554 5788872223467799999999999999986543
Q ss_pred -CccccchhhHHHHhhcCC
Q 003525 399 -MKLAEDVDLERVAKDTHG 416 (813)
Q Consensus 399 -~~l~~~~~l~~la~~t~g 416 (813)
+.+.++ .+..++.....
T Consensus 261 ~~~i~~e-v~~~la~~~~~ 278 (408)
T COG0593 261 GIEIPDE-VLEFLAKRLDR 278 (408)
T ss_pred CCCCCHH-HHHHHHHHhhc
Confidence 344433 45666665443
No 309
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.80 E-value=2e-09 Score=98.25 Aligned_cols=104 Identities=30% Similarity=0.430 Sum_probs=60.9
Q ss_pred eeeeecCCCCChhHHHHHHHHHhCCeEEEEecc-chhh-hccccc-----HH----HHHHHHHHHHhCCCeEEEEecchh
Q 003525 524 GVLFYGPPGCGKTLLAKAIANECQANFISVKGP-ELLT-MWFGES-----EA----NVREIFDKARQSAPCVLFFDELDS 592 (813)
Q Consensus 524 gilL~GppGtGKT~la~ala~~~~~~~i~v~~~-~l~~-~~vg~s-----e~----~i~~vF~~a~~~~p~il~iDEid~ 592 (813)
++||.|+||+|||++|+++|..++..|..|... +++- ...|.. .. .-.-+| ..|+++|||.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 489999999999999999999999999888763 4431 111111 00 111222 24999999977
Q ss_pred hhhccCCCCCCCCchHHHHHHHHHHHHhccC---------CCCcEEEEeccCCCC-----CCCccccCCCCc
Q 003525 593 IATQRGSSTGDAGGAADRVLNQLLTEMDGMN---------AKKTVFIIGATNRPD-----IIDPALLRPGRL 650 (813)
Q Consensus 593 l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~---------~~~~v~vi~aTn~~~-----~ld~allr~gRf 650 (813)
. ..++++.||+.|..-. -.+.++||||-|+.+ .|++|++. ||
T Consensus 74 a--------------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 A--------------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp S---------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred C--------------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 4 3568899999887431 235689999999876 47788887 77
No 310
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.79 E-value=3e-08 Score=110.56 Aligned_cols=135 Identities=19% Similarity=0.281 Sum_probs=81.3
Q ss_pred CCceeeeecCCCCChhHHHHHHHHHhCC--eEEEEecc-chhhhccccc-HHHH--HHHHHHHHhC---CCeEEEEecch
Q 003525 521 PSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGP-ELLTMWFGES-EANV--REIFDKARQS---APCVLFFDELD 591 (813)
Q Consensus 521 ~~~gilL~GppGtGKT~la~ala~~~~~--~~i~v~~~-~l~~~~vg~s-e~~i--~~vF~~a~~~---~p~il~iDEid 591 (813)
...++||+||||||||++|++++..++. +|..+... ..-+..+|.. -... ..-|...... ...++|+|||.
T Consensus 38 ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ 117 (498)
T PRK13531 38 SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIW 117 (498)
T ss_pred cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccc
Confidence 3456999999999999999999998653 33322221 0111223321 1111 1123222111 23499999997
Q ss_pred hhhhccCCCCCCCCchHHHHHHHHHHHHhccC--------CCCcEEEEeccCCCC---CCCccccCCCCcccccccCCCC
Q 003525 592 SIATQRGSSTGDAGGAADRVLNQLLTEMDGMN--------AKKTVFIIGATNRPD---IIDPALLRPGRLDQLIYIPLPD 660 (813)
Q Consensus 592 ~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~--------~~~~v~vi~aTn~~~---~ld~allr~gRf~~~i~~~~p~ 660 (813)
.+ ...+++.||..|..-. .....++++|||... ...+|++- ||-..+.+|+|+
T Consensus 118 ra--------------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~ 181 (498)
T PRK13531 118 KA--------------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQ 181 (498)
T ss_pred cC--------------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCC
Confidence 54 3568899999984321 112235555557432 24458887 998899999997
Q ss_pred -HHHHHHHHHHH
Q 003525 661 -EASRLQIFKAC 671 (813)
Q Consensus 661 -~~~r~~Il~~~ 671 (813)
.++-.+|+...
T Consensus 182 ~~~~e~~lL~~~ 193 (498)
T PRK13531 182 DKANFRSMLTSQ 193 (498)
T ss_pred chHHHHHHHHcc
Confidence 46667888764
No 311
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.79 E-value=5.1e-08 Score=106.86 Aligned_cols=128 Identities=30% Similarity=0.434 Sum_probs=87.6
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhh--hhcchhHHHH------------HHHHHHHHhcCCcEEE
Q 003525 248 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS--KLAGESESNL------------RKAFEEAEKNAPSIIF 313 (813)
Q Consensus 248 ~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~--~~~g~~~~~l------------~~vf~~a~~~~p~il~ 313 (813)
.+.++||.||||||||+|++.+|..++..++.++|..-+. ...|...-.. +-+|.... ++++
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill 117 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILL 117 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEE
Confidence 4789999999999999999999999999999999864321 1112111110 00111111 3999
Q ss_pred eccchhccCCCCCCchhHHHHHHHHHHHHhhc----------cccCCcEEEEEecC-----CCCCCCHHhhccCCcceEE
Q 003525 314 IDELDSIAPKREKTHGEVERRIVSQLLTLMDG----------LKSRAHVIVMGATN-----RPNSIDPALRRFGRFDREI 378 (813)
Q Consensus 314 iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~----------~~~~~~vivi~atn-----~~~~ld~~l~r~~Rf~~~i 378 (813)
+|||+...+ .+.+.|+..|+. +.-...+++++|.| ....+++++.+ ||...+
T Consensus 118 ~DEInra~p-----------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~ 184 (329)
T COG0714 118 LDEINRAPP-----------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRI 184 (329)
T ss_pred EeccccCCH-----------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEE
Confidence 999997653 355677777765 33446788888889 44567889988 888888
Q ss_pred EcCCCCHH-HHHHHH
Q 003525 379 DIGVPDEV-GRLEIL 392 (813)
Q Consensus 379 ~i~~p~~~-~R~~Il 392 (813)
.++.|+.+ +...++
T Consensus 185 ~v~yp~~~~e~~~i~ 199 (329)
T COG0714 185 YVDYPDSEEEERIIL 199 (329)
T ss_pred ecCCCCchHHHHHHH
Confidence 99999444 444443
No 312
>PRK09087 hypothetical protein; Validated
Probab=98.79 E-value=5.6e-08 Score=100.28 Aligned_cols=141 Identities=22% Similarity=0.293 Sum_probs=90.6
Q ss_pred CceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCc
Q 003525 249 PKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTH 328 (813)
Q Consensus 249 ~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~ 328 (813)
...++|+||+|||||+|+++++...+.. +++..++.. .++..... .+++|||++.+...
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~-----------~~~~~~~~---~~l~iDDi~~~~~~----- 102 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGS-----------DAANAAAE---GPVLIEDIDAGGFD----- 102 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcch-----------HHHHhhhc---CeEEEECCCCCCCC-----
Confidence 3459999999999999999999876554 343322211 11111111 47899999976311
Q ss_pred hhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCC---CHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcc-ccc
Q 003525 329 GEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AED 404 (813)
Q Consensus 329 ~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~l---d~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l-~~~ 404 (813)
...|..+++........++++++..|..+ .+.+++.......+++..|+.+.|.++++..+....+ .++
T Consensus 103 -------~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ 175 (226)
T PRK09087 103 -------ETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDP 175 (226)
T ss_pred -------HHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 13355666655555566777666655433 5667762223478899999999999999987765433 233
Q ss_pred hhhHHHHhhcCCC
Q 003525 405 VDLERVAKDTHGY 417 (813)
Q Consensus 405 ~~l~~la~~t~g~ 417 (813)
..+..++....+-
T Consensus 176 ev~~~La~~~~r~ 188 (226)
T PRK09087 176 HVVYYLVSRMERS 188 (226)
T ss_pred HHHHHHHHHhhhh
Confidence 4567777766643
No 313
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.78 E-value=1.2e-07 Score=107.44 Aligned_cols=198 Identities=22% Similarity=0.298 Sum_probs=122.2
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHc---ccCC--------------hhhhh----hhCCCCCceEEEECCCCCchHHHH
Q 003525 208 RLNEVGYDDVGGVRKQMAQIRELVEL---PLRH--------------PQLFK----SIGVKPPKGILLYGPPGSGKTLIA 266 (813)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~---~l~~--------------~~~~~----~l~i~~~~~vLL~GppGsGKTtLa 266 (813)
++.+-.|.|+.|=+..-..+..++.+ ...+ .+++. ..+-.+.+-+||+||||-||||||
T Consensus 264 ky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLA 343 (877)
T KOG1969|consen 264 KYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLA 343 (877)
T ss_pred ccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHH
Confidence 44556778888877766666555542 0011 11221 111233455899999999999999
Q ss_pred HHHHHHhCCeEEEEechhhhhhhcchhHHHHHHHHHHH----HhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHH
Q 003525 267 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTL 342 (813)
Q Consensus 267 r~la~~l~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ 342 (813)
+.+|...|..++.||+++-.+. ....+++..+.+.- ....|..|++||||-.. +..+..++.+
T Consensus 344 HViAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~-----------~~~Vdvilsl 410 (877)
T KOG1969|consen 344 HVIAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP-----------RAAVDVILSL 410 (877)
T ss_pred HHHHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCCc-----------HHHHHHHHHH
Confidence 9999999999999999874321 12233443333321 12678999999999442 2344455544
Q ss_pred hhc-------ccc---------C---CcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcccc
Q 003525 343 MDG-------LKS---------R---AHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAE 403 (813)
Q Consensus 343 ld~-------~~~---------~---~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~ 403 (813)
+.. -.. + -.--||+.||+.. -|+|+-..-|...+.|..|......+-|+..+.+-.+..
T Consensus 411 v~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~ 488 (877)
T KOG1969|consen 411 VKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRA 488 (877)
T ss_pred HHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCCC
Confidence 431 000 0 1123667788753 588877666888999999998887777777766555432
Q ss_pred c-hhhHHHHhhcCCCchH
Q 003525 404 D-VDLERVAKDTHGYVGS 420 (813)
Q Consensus 404 ~-~~l~~la~~t~g~~~~ 420 (813)
+ ..+..|.+.+++-...
T Consensus 489 d~~aL~~L~el~~~DIRs 506 (877)
T KOG1969|consen 489 DSKALNALCELTQNDIRS 506 (877)
T ss_pred CHHHHHHHHHHhcchHHH
Confidence 2 3456666666654433
No 314
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=2.1e-07 Score=109.26 Aligned_cols=177 Identities=19% Similarity=0.275 Sum_probs=119.8
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe----------
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~---------- 276 (813)
+++.+.+|++|.|.++.++.|+..+..- .-+..+||+||+|+|||++++++|+.+.+.
T Consensus 9 ~kyRP~~f~~viGq~~~~~~L~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg 76 (614)
T PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACN 76 (614)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 4567889999999999999998887630 234569999999999999999999987531
Q ss_pred ---------------EEEEechhhhhhhcchhHHHHHHHHHHHHh----cCCcEEEeccchhccCCCCCCchhHHHHHHH
Q 003525 277 ---------------FFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVS 337 (813)
Q Consensus 277 ---------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~ 337 (813)
++.+++.+ ......++.+...+.. ...-+++|||+|.+.. ...+
T Consensus 77 ~C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-----------~a~n 139 (614)
T PRK14971 77 ECESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-----------AAFN 139 (614)
T ss_pred cchHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-----------HHHH
Confidence 22222211 1123456666655432 2235999999998842 2346
Q ss_pred HHHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhHHHHhhcCC
Q 003525 338 QLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHG 416 (813)
Q Consensus 338 ~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g 416 (813)
.|+..|+.... ..++|.+|+....+-+.+++ |. ..+++..++..+-...+...+....+. +...+..++..+.|
T Consensus 140 aLLK~LEepp~--~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g 214 (614)
T PRK14971 140 AFLKTLEEPPS--YAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG 214 (614)
T ss_pred HHHHHHhCCCC--CeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 77888876433 45556666677888888887 44 458899998888887777655544433 22346677776655
Q ss_pred C
Q 003525 417 Y 417 (813)
Q Consensus 417 ~ 417 (813)
-
T Consensus 215 d 215 (614)
T PRK14971 215 G 215 (614)
T ss_pred C
Confidence 3
No 315
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.77 E-value=2.3e-08 Score=116.76 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=27.8
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHh
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANET 273 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l 273 (813)
++.+.++..+.|+||+|||||||+++|++..
T Consensus 20 s~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 20 SFTIEEGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3456789999999999999999999999985
No 316
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.77 E-value=3.1e-08 Score=97.49 Aligned_cols=112 Identities=24% Similarity=0.351 Sum_probs=73.1
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHhCC----eEEEEechhhhhhhcchhHHHHHHHHHH----HHhcCCcEEEeccchh
Q 003525 248 PPKGILLYGPPGSGKTLIARAVANETGA----FFFLINGPEIMSKLAGESESNLRKAFEE----AEKNAPSIIFIDELDS 319 (813)
Q Consensus 248 ~~~~vLL~GppGsGKTtLar~la~~l~~----~~v~v~~~~l~~~~~g~~~~~l~~vf~~----a~~~~p~il~iDEid~ 319 (813)
|-..++|+||+|||||.++++||..+.. +++.+++.++.... +....+...+.. .......|+|+||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~--~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD--DVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH--HCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc--hHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4457999999999999999999999985 89999998876510 001111111111 1111123999999999
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHhhccc---------cCCcEEEEEecCCC
Q 003525 320 IAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAHVIVMGATNRP 361 (813)
Q Consensus 320 l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~vivi~atn~~ 361 (813)
+.+......+.....+.+.|+..+++-. .-.++++|+|+|--
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 9886433444445567788888886421 12467888888743
No 317
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.77 E-value=9.4e-08 Score=105.83 Aligned_cols=141 Identities=24% Similarity=0.391 Sum_probs=83.6
Q ss_pred cccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe-----E--EEEec----
Q 003525 214 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-----F--FLING---- 282 (813)
Q Consensus 214 ~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~-----~--v~v~~---- 282 (813)
++++.+-+..++.+...+. .+++++|+||||||||++|+.+|..+... + +.+..
T Consensus 174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 3455555666555544432 36789999999999999999999887431 1 22221
Q ss_pred hhhhhhh-cch-h----HHHHHHHHHHHHh--cCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhh----------
Q 003525 283 PEIMSKL-AGE-S----ESNLRKAFEEAEK--NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMD---------- 344 (813)
Q Consensus 283 ~~l~~~~-~g~-~----~~~l~~vf~~a~~--~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld---------- 344 (813)
.+++..+ .+. . ...+..+++.|.. ..|.++|||||+..-..+ +...++.+++
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k----------iFGel~~lLE~~~rg~~~~v 308 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK----------VFGEVMMLMEHDKRGENWSV 308 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH----------hhhhhhhhccccccccccce
Confidence 1222111 110 0 1122334455544 357899999998754321 1122222222
Q ss_pred ----------ccccCCcEEEEEecCCCC----CCCHHhhccCCcceEEEcCC
Q 003525 345 ----------GLKSRAHVIVMGATNRPN----SIDPALRRFGRFDREIDIGV 382 (813)
Q Consensus 345 ----------~~~~~~~vivi~atn~~~----~ld~~l~r~~Rf~~~i~i~~ 382 (813)
.+....++.+|||+|..+ .+|.+++| ||.. +++.+
T Consensus 309 ~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~f-i~i~p 357 (459)
T PRK11331 309 PLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFSF-IDIEP 357 (459)
T ss_pred eeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhhe-EEecC
Confidence 233456899999999887 78999999 7743 45543
No 318
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.77 E-value=4e-08 Score=113.64 Aligned_cols=132 Identities=20% Similarity=0.248 Sum_probs=84.6
Q ss_pred CceeeeecCCCCChhHHHHHHHHHhCCe-EEEEecc---chhhh-----cccccHHHHHHHHHHHHhCCCeEEEEecchh
Q 003525 522 SKGVLFYGPPGCGKTLLAKAIANECQAN-FISVKGP---ELLTM-----WFGESEANVREIFDKARQSAPCVLFFDELDS 592 (813)
Q Consensus 522 ~~gilL~GppGtGKT~la~ala~~~~~~-~i~v~~~---~l~~~-----~vg~se~~i~~vF~~a~~~~p~il~iDEid~ 592 (813)
..++||+|+||+|||++|++++..+... |+...++ .+... ..|+..-.-.. +..| ...++++||++.
T Consensus 236 ~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~-l~~A---~~Gil~iDEi~~ 311 (509)
T smart00350 236 DINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGA-LVLA---DNGVCCIDEFDK 311 (509)
T ss_pred cceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCcc-EEec---CCCEEEEechhh
Confidence 3469999999999999999999987543 3321111 12110 01110000001 1122 235999999999
Q ss_pred hhhccCCCCCCCCchHHHHHHHHHHHHhccC-----------CCCcEEEEeccCCCC-------------CCCccccCCC
Q 003525 593 IATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----------AKKTVFIIGATNRPD-------------IIDPALLRPG 648 (813)
Q Consensus 593 l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----------~~~~v~vi~aTn~~~-------------~ld~allr~g 648 (813)
+- ......|+..|+.-. -..++.||+|+|..+ .|++++++
T Consensus 312 l~--------------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs-- 375 (509)
T smart00350 312 MD--------------DSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS-- 375 (509)
T ss_pred CC--------------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--
Confidence 73 234566666665321 124688999999752 58899998
Q ss_pred Ccccccc-cCCCCHHHHHHHHHHHhc
Q 003525 649 RLDQLIY-IPLPDEASRLQIFKACLR 673 (813)
Q Consensus 649 Rf~~~i~-~~~p~~~~r~~Il~~~l~ 673 (813)
|||.++. .+.|+.+...+|.+..+.
T Consensus 376 RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 376 RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 9997654 478999999999988663
No 319
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.76 E-value=1.7e-08 Score=117.64 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=28.1
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~ 274 (813)
++.+.+++.+.|+||+|||||||+++|++.+.
T Consensus 25 s~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 56 (510)
T PRK09700 25 NLTVYPGEIHALLGENGAGKSTLMKVLSGIHE 56 (510)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC
Confidence 34567899999999999999999999998763
No 320
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.75 E-value=3e-07 Score=98.00 Aligned_cols=109 Identities=20% Similarity=0.331 Sum_probs=74.8
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe-------EEEEechhhhh----------------------------
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-------FFLINGPEIMS---------------------------- 287 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~-------~v~v~~~~l~~---------------------------- 287 (813)
+|.+.+++.+.|+|.+|||||..+.++.+.+..+ -+..+|.+++.
T Consensus 30 sf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl 109 (534)
T COG4172 30 SFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPL 109 (534)
T ss_pred eeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcH
Confidence 4467889999999999999999999999988542 24444443311
Q ss_pred -------------------------------------------hhcch--hHHHHHHHHHHHHhcCCcEEEeccchhccC
Q 003525 288 -------------------------------------------KLAGE--SESNLRKAFEEAEKNAPSIIFIDELDSIAP 322 (813)
Q Consensus 288 -------------------------------------------~~~g~--~~~~l~~vf~~a~~~~p~il~iDEid~l~~ 322 (813)
.|..+ ..++-|.++.-|..+.|.+|+-||
T Consensus 110 ~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADE------ 183 (534)
T COG4172 110 HTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADE------ 183 (534)
T ss_pred hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecC------
Confidence 01100 223445566667777888998888
Q ss_pred CCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCC
Q 003525 323 KREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRP 361 (813)
Q Consensus 323 ~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~ 361 (813)
+....+-.+..+++.++..++.+.+..++..|++.
T Consensus 184 ----PTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL 218 (534)
T COG4172 184 ----PTTALDVTVQAQILDLLKELQAELGMAILFITHDL 218 (534)
T ss_pred ----CcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH
Confidence 34445556778888888888877777777777754
No 321
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=4e-07 Score=99.84 Aligned_cols=182 Identities=16% Similarity=0.193 Sum_probs=115.4
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe-------EEEE-
Q 003525 209 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-------FFLI- 280 (813)
Q Consensus 209 ~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~-------~v~v- 280 (813)
+.+..++++.|.++.++.+...+..- .-+..+||+||+|+||||+++.+|..+... ....
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 35667888999999999998887641 224469999999999999999999987541 1000
Q ss_pred ---ech---hh--------h--hhh---------cchhHHHHHHHHHHHH----hcCCcEEEeccchhccCCCCCCchhH
Q 003525 281 ---NGP---EI--------M--SKL---------AGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEV 331 (813)
Q Consensus 281 ---~~~---~l--------~--~~~---------~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~ 331 (813)
.|. .+ . ... ..-.-..++.+.+... .....|++|||+|.+..
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~--------- 155 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR--------- 155 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH---------
Confidence 111 01 0 000 0001233444433322 23456999999998842
Q ss_pred HHHHHHHHHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhHHHH
Q 003525 332 ERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVA 411 (813)
Q Consensus 332 ~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la 411 (813)
...+.|+..+++... +.++|..++.++.+.+.+++ |+ ..+.+++|+.++-..+|........+ ++..+..++
T Consensus 156 --~aanaLLk~LEEpp~--~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~-~~~~~~~i~ 227 (351)
T PRK09112 156 --NAANAILKTLEEPPA--RALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGS-DGEITEALL 227 (351)
T ss_pred --HHHHHHHHHHhcCCC--CceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCC-CHHHHHHHH
Confidence 234668888876443 44555557788888899987 66 57999999999999998764322221 122345566
Q ss_pred hhcCCCch
Q 003525 412 KDTHGYVG 419 (813)
Q Consensus 412 ~~t~g~~~ 419 (813)
..+.|-..
T Consensus 228 ~~s~G~pr 235 (351)
T PRK09112 228 QRSKGSVR 235 (351)
T ss_pred HHcCCCHH
Confidence 66665443
No 322
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.75 E-value=2.3e-08 Score=115.84 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=28.1
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~ 274 (813)
++.+.+++.+.|+||+|||||||+++|++.+.
T Consensus 18 s~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 49 (491)
T PRK10982 18 NLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ 49 (491)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 44567899999999999999999999998763
No 323
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.74 E-value=2.8e-08 Score=116.29 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=28.5
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~ 274 (813)
++.+.++..+.|+||+|||||||+++|++.+.
T Consensus 21 sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~ 52 (530)
T PRK15064 21 SVKFGGGNRYGLIGANGCGKSTFMKILGGDLE 52 (530)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45678899999999999999999999999763
No 324
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.74 E-value=2.2e-08 Score=116.38 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=28.2
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~ 274 (813)
++.+.+++.+.|+||+|||||||+++|++.+.
T Consensus 24 s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~ 55 (501)
T PRK10762 24 ALNVYPGRVMALVGENGAGKSTMMKVLTGIYT 55 (501)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34567899999999999999999999999864
No 325
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.74 E-value=2e-08 Score=116.34 Aligned_cols=32 Identities=34% Similarity=0.485 Sum_probs=28.4
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~ 274 (813)
++.+.+++.+.|+||+|||||||+++|++.+.
T Consensus 23 sl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~ 54 (490)
T PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGELP 54 (490)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 45668899999999999999999999999864
No 326
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.74 E-value=2.9e-08 Score=116.13 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=28.6
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~ 274 (813)
++.+.+++.+.|+||+|||||||+++|++.+.
T Consensus 29 sl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~ 60 (529)
T PRK15134 29 SLQIEAGETLALVGESGSGKSVTALSILRLLP 60 (529)
T ss_pred EEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34567899999999999999999999999875
No 327
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.74 E-value=4.3e-08 Score=111.96 Aligned_cols=144 Identities=24% Similarity=0.371 Sum_probs=88.5
Q ss_pred cccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCe--EEEEeccchh---
Q 003525 485 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELL--- 559 (813)
Q Consensus 485 ~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~--~i~v~~~~l~--- 559 (813)
..|+++.|++.+++.+.-.+ .....++|+||||||||++++++++.+... -..+....+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 36788899888876654322 233569999999999999999999765211 0111111110
Q ss_pred -----------------------hhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHH
Q 003525 560 -----------------------TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLL 616 (813)
Q Consensus 560 -----------------------~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL 616 (813)
...+|.....-.-.+..|.. .+|||||++.+. ..+++.|+
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~~--------------~~~~~~L~ 316 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEFK--------------RSVLDALR 316 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhCC--------------HHHHHHHH
Confidence 00111110000012333333 599999998862 45677777
Q ss_pred HHHhccC-----------CCCcEEEEeccCCC------C-----------------CCCccccCCCCcccccccCCCCHH
Q 003525 617 TEMDGMN-----------AKKTVFIIGATNRP------D-----------------IIDPALLRPGRLDQLIYIPLPDEA 662 (813)
Q Consensus 617 ~~ld~~~-----------~~~~v~vi~aTn~~------~-----------------~ld~allr~gRf~~~i~~~~p~~~ 662 (813)
+.|+... ...++.+|+|+|.- + .|...|+. |||.++.+++++..
T Consensus 317 ~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~ 394 (499)
T TIGR00368 317 EPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPE 394 (499)
T ss_pred HHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHH
Confidence 7776432 12468899999862 1 36777887 99999999887764
No 328
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=4.2e-08 Score=106.53 Aligned_cols=133 Identities=18% Similarity=0.245 Sum_probs=94.5
Q ss_pred CCCceeeeecCCCCChhHHHHHHHHHhCCe-------------------------EEEEeccchhh--------hc----
Q 003525 520 SPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------------------FISVKGPELLT--------MW---- 562 (813)
Q Consensus 520 ~~~~gilL~GppGtGKT~la~ala~~~~~~-------------------------~i~v~~~~l~~--------~~---- 562 (813)
+.+.++||+||+|+||+++|+++|..+... +..+....... .|
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 566789999999999999999999876321 22221110000 00
Q ss_pred --cc---------ccHHHHHHHHHHH----HhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCc
Q 003525 563 --FG---------ESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKT 627 (813)
Q Consensus 563 --vg---------~se~~i~~vF~~a----~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~ 627 (813)
-| -.-..|+.+.+.. ......|++||++|.+- ...-|.||..|+ ++..+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~--------------~~AaNaLLKtLE--EPp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN--------------VAAANALLKTLE--EPPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC--------------HHHHHHHHHHhc--CCCcC
Confidence 00 0123455555543 33445699999999973 345689999999 45678
Q ss_pred EEEEeccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHH
Q 003525 628 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKAC 671 (813)
Q Consensus 628 v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~ 671 (813)
+++|.+|++|+.|.|.+++ |+ ..+.|++|+.++..+.|...
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 8999999999999999998 88 48999999999988888754
No 329
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.73 E-value=1.1e-07 Score=111.29 Aligned_cols=135 Identities=20% Similarity=0.263 Sum_probs=91.5
Q ss_pred ceeeeecCCCCChhHHHHHHHHHhCC--eEEEEeccchhhhcccccH--HHHH---HHHHH--HHhCCCeEEEEecchhh
Q 003525 523 KGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESE--ANVR---EIFDK--ARQSAPCVLFFDELDSI 593 (813)
Q Consensus 523 ~gilL~GppGtGKT~la~ala~~~~~--~~i~v~~~~l~~~~vg~se--~~i~---~vF~~--a~~~~p~il~iDEid~l 593 (813)
.++||.|+||||||++|++++..+.. +|+.+.........+|... ..+. ..|+. .......+||+|||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 46999999999999999999998754 5887764322233334310 0000 00100 00011249999999997
Q ss_pred hhccCCCCCCCCchHHHHHHHHHHHHhccC-----------CCCcEEEEeccCCCC---CCCccccCCCCcccccccC-C
Q 003525 594 ATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----------AKKTVFIIGATNRPD---IIDPALLRPGRLDQLIYIP-L 658 (813)
Q Consensus 594 ~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----------~~~~v~vi~aTn~~~---~ld~allr~gRf~~~i~~~-~ 658 (813)
- ..+++.|+..|+.-. ...++.||+|+|..+ .|.++|+. ||+.+|.+. +
T Consensus 97 ~--------------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~ 160 (589)
T TIGR02031 97 D--------------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDV 160 (589)
T ss_pred C--------------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCC
Confidence 3 457788888886421 124688999999875 68889998 999887776 4
Q ss_pred CCHHHHHHHHHHHhc
Q 003525 659 PDEASRLQIFKACLR 673 (813)
Q Consensus 659 p~~~~r~~Il~~~l~ 673 (813)
|+.++|.+|++..+.
T Consensus 161 ~~~~er~eil~~~~~ 175 (589)
T TIGR02031 161 ASQDLRVEIVRRERC 175 (589)
T ss_pred CCHHHHHHHHHHHHH
Confidence 677889999988763
No 330
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.73 E-value=5.5e-07 Score=94.53 Aligned_cols=60 Identities=38% Similarity=0.663 Sum_probs=45.9
Q ss_pred ccccChHHHHHH---HHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhC--CeEEEEechhh
Q 003525 215 DDVGGVRKQMAQ---IRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG--AFFFLINGPEI 285 (813)
Q Consensus 215 ~~i~G~~~~~~~---i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~--~~~v~v~~~~l 285 (813)
+.+.|+.+.-+. +.+++.. +-..+++||+.||||||||.||-.+|+++| .+|+.++++++
T Consensus 39 dG~VGQ~~AReAaGvIv~mik~-----------gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEi 103 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKMIKQ-----------GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEI 103 (450)
T ss_pred CcccchHHHHHhhhHHHHHHHh-----------CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeecccee
Confidence 457787776554 3444432 446789999999999999999999999997 46777777665
No 331
>PLN03073 ABC transporter F family; Provisional
Probab=98.72 E-value=2.8e-08 Score=118.80 Aligned_cols=30 Identities=30% Similarity=0.309 Sum_probs=27.0
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHH
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANE 272 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~ 272 (813)
+|.+.++..+.|+|++|||||||+++|++.
T Consensus 197 sl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~ 226 (718)
T PLN03073 197 SVTLAFGRHYGLVGRNGTGKTTFLRYMAMH 226 (718)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 456788999999999999999999999974
No 332
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.72 E-value=2.7e-07 Score=104.59 Aligned_cols=204 Identities=21% Similarity=0.301 Sum_probs=133.2
Q ss_pred eeeeecCCCCChhHHHHHHHHHh----------CCeEEEEeccchhh----------hcccccH------HHHHHHHHHH
Q 003525 524 GVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELLT----------MWFGESE------ANVREIFDKA 577 (813)
Q Consensus 524 gilL~GppGtGKT~la~ala~~~----------~~~~i~v~~~~l~~----------~~vg~se------~~i~~vF~~a 577 (813)
.+.+.|-||||||.++..+...+ .+.|+.|+|-.+.+ .+.|+.- ..+..-|..+
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 48899999999999999998865 35678888866643 2234331 2233444422
Q ss_pred -HhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCCCcccc-C-CCCcc-cc
Q 003525 578 -RQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALL-R-PGRLD-QL 653 (813)
Q Consensus 578 -~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~all-r-~gRf~-~~ 653 (813)
....++|++|||.|.|+.+. ..|+-.|+..-. ....+++||+..|..+....-|. | .+|++ ..
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~-----------QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tR 570 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRS-----------QDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTR 570 (767)
T ss_pred CCCCCCEEEEeccHHHHhccc-----------HHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhhhcccee
Confidence 23457999999999998642 234443333211 24568999999998876443333 1 13766 67
Q ss_pred cccCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCH--HHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCccc
Q 003525 654 IYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSG--ADITEVCQRACKYAIRENIEKDIERERRKMENPEAM 731 (813)
Q Consensus 654 i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg--~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~ 731 (813)
|.|.+++.++..+|+...+.....-...-++-+|+.-...|| +....+|++|+..|-.+....
T Consensus 571 i~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~--------------- 635 (767)
T KOG1514|consen 571 ICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKG--------------- 635 (767)
T ss_pred eecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccc---------------
Confidence 899999999999999999977633222224444554444555 344568999988877765310
Q ss_pred ccccccccccccHHHHHHHHhhccCCC
Q 003525 732 EEDEVDDVDEIKAVHFEESMKYARRSV 758 (813)
Q Consensus 732 ~~~~~~~~~~i~~~~f~~a~~~~~~s~ 758 (813)
..+..+.|+..|+.+|+.++.-+.
T Consensus 636 ---k~~~~q~v~~~~v~~Ai~em~~~~ 659 (767)
T KOG1514|consen 636 ---KLAVSQLVGILHVMEAINEMLASP 659 (767)
T ss_pred ---cccccceeehHHHHHHHHHHhhhh
Confidence 112345788999999988875543
No 333
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.70 E-value=4e-08 Score=114.31 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=28.2
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~ 274 (813)
++.+.++..+.|+||+|||||||+++|++.+.
T Consensus 31 sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~ 62 (510)
T PRK15439 31 DFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP 62 (510)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34567889999999999999999999999864
No 334
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.70 E-value=1.1e-07 Score=110.66 Aligned_cols=200 Identities=13% Similarity=0.158 Sum_probs=115.9
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEE-ecc-----
Q 003525 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISV-KGP----- 556 (813)
Q Consensus 483 ~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v-~~~----- 556 (813)
...+++++.|.++..+.+..++.... ++..+.+.++|+||||||||++++++|++++..++.+ +..
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~ 150 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQ 150 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccc
Confidence 34567888888887777765543210 1223334599999999999999999999987654331 110
Q ss_pred -ch----------hhhcccccHHHHHHHHHHHHh----------CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHH
Q 003525 557 -EL----------LTMWFGESEANVREIFDKARQ----------SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 615 (813)
Q Consensus 557 -~l----------~~~~vg~se~~i~~vF~~a~~----------~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 615 (813)
+. +..+ -......+.+...+.. ....|||||||+.+... ..+.+..+
T Consensus 151 ~~~~~~~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-----------~~~~lq~l 218 (637)
T TIGR00602 151 KNDHKVTLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-----------DTRALHEI 218 (637)
T ss_pred ccccccchhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-----------hHHHHHHH
Confidence 00 0011 1122334455555432 24569999999987532 12244455
Q ss_pred HH-HHhccCCCCcEEEEeccC-CCC--------------CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCC--C
Q 003525 616 LT-EMDGMNAKKTVFIIGATN-RPD--------------IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSP--I 677 (813)
Q Consensus 616 L~-~ld~~~~~~~v~vi~aTn-~~~--------------~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~--~ 677 (813)
|. ... . ...+.+|++++ .|. .|.++++..-|.. +|.|++.......+.|+..+.... .
T Consensus 219 Lr~~~~--e-~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~~E~~~~ 294 (637)
T TIGR00602 219 LRWKYV--S-IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIVTIEAKKN 294 (637)
T ss_pred HHHHhh--c-CCCceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHHHhhhhcc
Confidence 54 221 1 22333333333 121 1446777422453 799999999998888888776431 1
Q ss_pred C------CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 003525 678 S------PDVDLSALARYTHGFSGADITEVCQRACKYAI 710 (813)
Q Consensus 678 ~------~~~d~~~la~~~~g~sg~di~~l~~~a~~~a~ 710 (813)
. ....+..|+. .+++||+.++......+.
T Consensus 295 ~~~~~~p~~~~l~~I~~----~s~GDiRsAIn~LQf~~~ 329 (637)
T TIGR00602 295 GEKIKVPKKTSVELLCQ----GCSGDIRSAINSLQFSSS 329 (637)
T ss_pred ccccccCCHHHHHHHHH----hCCChHHHHHHHHHHHHh
Confidence 1 1223555665 455699988877666544
No 335
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.70 E-value=8.5e-08 Score=103.51 Aligned_cols=59 Identities=17% Similarity=0.285 Sum_probs=45.4
Q ss_pred cccccchhhhhhhccccCCCCChhhhhhhcCC-CCceeeeecCCCCChhHHHHHHHHHhCC-------eEEEEec
Q 003525 489 DIGGLDNVKRELQETVQYPVEHPEKFEKFGMS-PSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISVKG 555 (813)
Q Consensus 489 ~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~-~~~gilL~GppGtGKT~la~ala~~~~~-------~~i~v~~ 555 (813)
++.|+++++.+|.+.+.... .|.. ..+.++|+|||||||||||++|++.++. +++.+++
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 89999999888876544321 1222 2355899999999999999999999865 7888877
No 336
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.69 E-value=1.6e-07 Score=102.15 Aligned_cols=155 Identities=21% Similarity=0.308 Sum_probs=95.4
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEe-----------
Q 003525 213 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLIN----------- 281 (813)
Q Consensus 213 ~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~----------- 281 (813)
.|..|.|+++.+..+.-.+-. ....+++|.|+||+|||||++++++.+......++
T Consensus 2 pf~~ivgq~~~~~al~~~~~~-------------~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVID-------------PKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcC-------------CCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 477899999988776332211 12467999999999999999999988743111111
Q ss_pred -----chhh----------------hh--------hhcchhHHHHHHH-------HHH--HHhcCCcEEEeccchhccCC
Q 003525 282 -----GPEI----------------MS--------KLAGESESNLRKA-------FEE--AEKNAPSIIFIDELDSIAPK 323 (813)
Q Consensus 282 -----~~~l----------------~~--------~~~g~~~~~l~~v-------f~~--a~~~~p~il~iDEid~l~~~ 323 (813)
|... .. ...|.. .+... |+. .......+||+||++.+.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~--d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~- 145 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTL--DIERALTEGVKAFEPGLLARANRGILYIDEVNLLED- 145 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecch--hHhhHhhcCCEEeecCcceeccCCEEEecChHhCCH-
Confidence 1100 00 011110 01111 111 0011236999999998742
Q ss_pred CCCCchhHHHHHHHHHHHHhhccc-----------cCCcEEEEEecCCCC-CCCHHhhccCCcceEEEcCCCCH-HHHHH
Q 003525 324 REKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVMGATNRPN-SIDPALRRFGRFDREIDIGVPDE-VGRLE 390 (813)
Q Consensus 324 ~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~vivi~atn~~~-~ld~~l~r~~Rf~~~i~i~~p~~-~~R~~ 390 (813)
.+...|+..|+.-. ...+++++++.|..+ .+.+++.. ||...+.++.|.. ++|.+
T Consensus 146 ----------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~e 213 (337)
T TIGR02030 146 ----------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVE 213 (337)
T ss_pred ----------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHH
Confidence 34466666664311 124678888888655 68888887 8998999999976 88889
Q ss_pred HHHHH
Q 003525 391 ILRIH 395 (813)
Q Consensus 391 Il~~~ 395 (813)
|++..
T Consensus 214 IL~~~ 218 (337)
T TIGR02030 214 IVERR 218 (337)
T ss_pred HHHhh
Confidence 98753
No 337
>PRK08116 hypothetical protein; Validated
Probab=98.69 E-value=3.5e-08 Score=104.47 Aligned_cols=131 Identities=24% Similarity=0.264 Sum_probs=80.2
Q ss_pred CceeeeecCCCCChhHHHHHHHHHh---CCeEEEEeccchhhhcc----cccHHHHHHHHHHHHhCCCeEEEEecchhhh
Q 003525 522 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWF----GESEANVREIFDKARQSAPCVLFFDELDSIA 594 (813)
Q Consensus 522 ~~gilL~GppGtGKT~la~ala~~~---~~~~i~v~~~~l~~~~v----g~se~~i~~vF~~a~~~~p~il~iDEid~l~ 594 (813)
..|++|+|++|||||+||.++|+.+ +.+++.++.++++..+. +.+......+++.... ..+|+|||+....
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~--~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVN--ADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcC--CCEEEEecccCCC
Confidence 4579999999999999999999986 57788888888776542 1111222334444332 3599999985521
Q ss_pred hccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCC-CC----CCccccCCCCc---ccccccCCCCHHHHHH
Q 003525 595 TQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP-DI----IDPALLRPGRL---DQLIYIPLPDEASRLQ 666 (813)
Q Consensus 595 ~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~-~~----ld~allr~gRf---~~~i~~~~p~~~~r~~ 666 (813)
..+.....|.+.++.....+ ..+|.|||.+ +. ++.++.+ |+ -..|.++.+|. |..
T Consensus 192 ------------~t~~~~~~l~~iin~r~~~~-~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~--R~~ 254 (268)
T PRK08116 192 ------------DTEWAREKVYNIIDSRYRKG-LPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY--RKE 254 (268)
T ss_pred ------------CCHHHHHHHHHHHHHHHHCC-CCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh--hHH
Confidence 12334456666666543222 3466677764 33 4666665 64 23456666664 444
Q ss_pred HHHHH
Q 003525 667 IFKAC 671 (813)
Q Consensus 667 Il~~~ 671 (813)
+.+..
T Consensus 255 ~~~ek 259 (268)
T PRK08116 255 IAKEK 259 (268)
T ss_pred HHHHH
Confidence 44433
No 338
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.69 E-value=1.1e-07 Score=103.62 Aligned_cols=169 Identities=21% Similarity=0.290 Sum_probs=103.5
Q ss_pred CceeeeecCCCCChhHHHHHHHHHhC---CeEEEEeccchhhh-----cccccH-------HHHHHHHHHHHhCCCeEEE
Q 003525 522 SKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTM-----WFGESE-------ANVREIFDKARQSAPCVLF 586 (813)
Q Consensus 522 ~~gilL~GppGtGKT~la~ala~~~~---~~~i~v~~~~l~~~-----~vg~se-------~~i~~vF~~a~~~~p~il~ 586 (813)
...|||+|++||||+++|++|-..+. .+|+.|++..+... .+|... ..-...|..|. ...||
T Consensus 22 ~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~---gGtL~ 98 (329)
T TIGR02974 22 DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERAD---GGTLF 98 (329)
T ss_pred CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCC---CCEEE
Confidence 34699999999999999999987764 68999999765321 112110 00111244443 35999
Q ss_pred EecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccC---------CCCcEEEEeccCCC-------CCCCccccCCCCc
Q 003525 587 FDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN---------AKKTVFIIGATNRP-------DIIDPALLRPGRL 650 (813)
Q Consensus 587 iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~---------~~~~v~vi~aTn~~-------~~ld~allr~gRf 650 (813)
||||+.+. ..++..|+..|+... ...++-||++||.. ..+.+.|.. ||
T Consensus 99 Ldei~~L~--------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl 162 (329)
T TIGR02974 99 LDELATAS--------------LLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RL 162 (329)
T ss_pred eCChHhCC--------------HHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hh
Confidence 99999984 345666777665421 12357889998864 234556665 77
Q ss_pred c-cccccCCCC--HHHHHHHHHHHhcc----CCCC--Cccc---HHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 003525 651 D-QLIYIPLPD--EASRLQIFKACLRK----SPIS--PDVD---LSALARYTHGFSGADITEVCQRACKYA 709 (813)
Q Consensus 651 ~-~~i~~~~p~--~~~r~~Il~~~l~~----~~~~--~~~d---~~~la~~~~g~sg~di~~l~~~a~~~a 709 (813)
. ..|.+|+.. .++...+++.++.+ .+.. ..++ +..|.....--+-++|+++++.|+..+
T Consensus 163 ~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 163 AFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred cchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 4 466776665 34455555555532 2211 1222 344444443345689999998887765
No 339
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.68 E-value=5.8e-07 Score=94.36 Aligned_cols=182 Identities=18% Similarity=0.265 Sum_probs=107.5
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHhCC---------eEEEEechhh------hhh--------h--cchhHHHHHHHHH
Q 003525 248 PPKGILLYGPPGSGKTLIARAVANETGA---------FFFLINGPEI------MSK--------L--AGESESNLRKAFE 302 (813)
Q Consensus 248 ~~~~vLL~GppGsGKTtLar~la~~l~~---------~~v~v~~~~l------~~~--------~--~g~~~~~l~~vf~ 302 (813)
...++||+|++|.|||++++.++...+. +++.+..+.- ... + ..........+..
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ 139 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLR 139 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHH
Confidence 3567999999999999999999977532 3455554221 110 0 0112233344555
Q ss_pred HHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCC--CHHhhccCCcceEEEc
Q 003525 303 EAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI--DPALRRFGRFDREIDI 380 (813)
Q Consensus 303 ~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~l--d~~l~r~~Rf~~~i~i 380 (813)
-.....+.+|+|||++.++... ..-.+.+.+.|..+...+ +-.++.+|+..-...+ |+.+.+ ||... .+
T Consensus 140 llr~~~vrmLIIDE~H~lLaGs----~~~qr~~Ln~LK~L~NeL--~ipiV~vGt~~A~~al~~D~QLa~--RF~~~-~L 210 (302)
T PF05621_consen 140 LLRRLGVRMLIIDEFHNLLAGS----YRKQREFLNALKFLGNEL--QIPIVGVGTREAYRALRTDPQLAS--RFEPF-EL 210 (302)
T ss_pred HHHHcCCcEEEeechHHHhccc----HHHHHHHHHHHHHHhhcc--CCCeEEeccHHHHHHhccCHHHHh--ccCCc-cC
Confidence 6667788899999999986432 222334444444443332 2356666654433333 667766 88543 33
Q ss_pred CC-CCHHHHHHHHHHHhcCCcccc------chhhHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcc
Q 003525 381 GV-PDEVGRLEILRIHTKNMKLAE------DVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMD 439 (813)
Q Consensus 381 ~~-p~~~~R~~Il~~~~~~~~l~~------~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~ 439 (813)
+. ...++-..++..+...+++.. ..-...+...+.|..| ++..++..|+..+++...+
T Consensus 211 p~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~sG~E 275 (302)
T PF05621_consen 211 PRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRSGEE 275 (302)
T ss_pred CCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhcCCc
Confidence 32 223344556666655555432 2233667777888776 5777888888888876543
No 340
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.68 E-value=3.1e-07 Score=92.26 Aligned_cols=143 Identities=17% Similarity=0.256 Sum_probs=92.6
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHhCCe------------------------EEEEechhhhhhhcchhHHHHHHHHHH
Q 003525 248 PPKGILLYGPPGSGKTLIARAVANETGAF------------------------FFLINGPEIMSKLAGESESNLRKAFEE 303 (813)
Q Consensus 248 ~~~~vLL~GppGsGKTtLar~la~~l~~~------------------------~v~v~~~~l~~~~~g~~~~~l~~vf~~ 303 (813)
.+..+||+||+|+|||++++.++..+... +..+... +. ....+.++.+.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~--~~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQ--SIKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cC--cCCHHHHHHHHHH
Confidence 35679999999999999999999987431 1111110 00 0123455555555
Q ss_pred HHh----cCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEE
Q 003525 304 AEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREID 379 (813)
Q Consensus 304 a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~ 379 (813)
+.. ....+++|||+|.+... ..+.|+..++.... ...+|.+++.+..+.+++++ |. ..++
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~~-----------~~~~Ll~~le~~~~--~~~~il~~~~~~~l~~~i~s--r~-~~~~ 151 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNEA-----------AANALLKTLEEPPP--NTLFILITPSPEKLLPTIRS--RC-QVLP 151 (188)
T ss_pred HccCcccCCeEEEEEechhhhCHH-----------HHHHHHHHhcCCCC--CeEEEEEECChHhChHHHHh--hc-EEee
Confidence 433 34569999999887432 24567777876433 34455566677889999987 55 4789
Q ss_pred cCCCCHHHHHHHHHHHhcCCccccchhhHHHHhhcCC
Q 003525 380 IGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHG 416 (813)
Q Consensus 380 i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g 416 (813)
+.+|+.++..+++... .+ ++..+..++..+.|
T Consensus 152 ~~~~~~~~~~~~l~~~----gi-~~~~~~~i~~~~~g 183 (188)
T TIGR00678 152 FPPLSEEALLQWLIRQ----GI-SEEAAELLLALAGG 183 (188)
T ss_pred CCCCCHHHHHHHHHHc----CC-CHHHHHHHHHHcCC
Confidence 9999999988888765 22 23345555555544
No 341
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.67 E-value=3e-07 Score=107.23 Aligned_cols=63 Identities=17% Similarity=0.373 Sum_probs=51.6
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeE
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF 277 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~ 277 (813)
+++.+..++++.|.++.++.++.++.-. .++..+++.++|+|||||||||+++++|++++..+
T Consensus 76 eKyrP~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~ 138 (637)
T TIGR00602 76 EKYKPETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQV 138 (637)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHH
Confidence 4678889999999999999998887631 12335566799999999999999999999987544
No 342
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.67 E-value=1.7e-07 Score=101.82 Aligned_cols=160 Identities=22% Similarity=0.352 Sum_probs=99.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEE----e----
Q 003525 210 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLI----N---- 281 (813)
Q Consensus 210 ~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v----~---- 281 (813)
....|++|.|+++.+..|.-....| ...+|||.|++||||||++|+++..+...-+.- +
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 4568999999999888775444321 224799999999999999999988764211000 0
Q ss_pred chh-----hhhhh-------------------cchhHHH------HHHHHHHHH---------hcCCcEEEeccchhccC
Q 003525 282 GPE-----IMSKL-------------------AGESESN------LRKAFEEAE---------KNAPSIIFIDELDSIAP 322 (813)
Q Consensus 282 ~~~-----l~~~~-------------------~g~~~~~------l~~vf~~a~---------~~~p~il~iDEid~l~~ 322 (813)
.++ ..+.. .+-++.. +...|.... .....+||+||++.+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~ 158 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 158 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence 000 00000 0111111 111121111 11236999999998853
Q ss_pred CCCCCchhHHHHHHHHHHHHhhcc-----------ccCCcEEEEEecCCCC-CCCHHhhccCCcceEEEcCCCC-HHHHH
Q 003525 323 KREKTHGEVERRIVSQLLTLMDGL-----------KSRAHVIVMGATNRPN-SIDPALRRFGRFDREIDIGVPD-EVGRL 389 (813)
Q Consensus 323 ~~~~~~~~~~~~v~~~Ll~~ld~~-----------~~~~~vivi~atn~~~-~ld~~l~r~~Rf~~~i~i~~p~-~~~R~ 389 (813)
. +...|+..|+.- ....+++++++.|..+ .+.+++.. ||...+.+..|. .+.+.
T Consensus 159 ~-----------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~ 225 (350)
T CHL00081 159 H-----------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRV 225 (350)
T ss_pred H-----------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHH
Confidence 2 345566666431 1234678888888655 58888887 899999999997 58999
Q ss_pred HHHHHH
Q 003525 390 EILRIH 395 (813)
Q Consensus 390 ~Il~~~ 395 (813)
+|++..
T Consensus 226 ~il~~~ 231 (350)
T CHL00081 226 KIVEQR 231 (350)
T ss_pred HHHHhh
Confidence 999754
No 343
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.67 E-value=7.6e-08 Score=111.88 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=28.4
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~ 274 (813)
++.+.+++.+.|+||+|||||||+++|++.+.
T Consensus 21 sl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~ 52 (500)
T TIGR02633 21 DLEVRPGECVGLCGENGAGKSTLMKILSGVYP 52 (500)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44567899999999999999999999999764
No 344
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.66 E-value=7.5e-08 Score=95.17 Aligned_cols=182 Identities=19% Similarity=0.262 Sum_probs=98.6
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCC-----eEEEEeccch
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISVKGPEL 558 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~-----~~i~v~~~~l 558 (813)
...+.||+|.++....|.-.... | ...+++|.|||||||||.+.++|+++-. ..+.+++++=
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~-----------g--nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde 89 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKE-----------G--NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE 89 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHc-----------C--CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc
Confidence 45578899999888877543221 2 1236999999999999999999998632 2456666553
Q ss_pred hhhcccccHHHHHHHHHHHHhC-CC---eEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEecc
Q 003525 559 LTMWFGESEANVREIFDKARQS-AP---CVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGAT 634 (813)
Q Consensus 559 ~~~~vg~se~~i~~vF~~a~~~-~p---~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aT 634 (813)
.+- ..-++--+.|..-+-. +| .|+++||+|++-. ...+.|-..|+-... ..-+..++
T Consensus 90 RGI---DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~--------------gAQQAlRRtMEiyS~--ttRFalaC 150 (333)
T KOG0991|consen 90 RGI---DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA--------------GAQQALRRTMEIYSN--TTRFALAC 150 (333)
T ss_pred ccc---HHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh--------------HHHHHHHHHHHHHcc--cchhhhhh
Confidence 221 1123333455443322 22 5999999999732 123333344443332 22345566
Q ss_pred CCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhc--cCCCCCcccHHHHHHHcCCCCHHHHHHHHHHH
Q 003525 635 NRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLR--KSPISPDVDLSALARYTHGFSGADITEVCQRA 705 (813)
Q Consensus 635 n~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~--~~~~~~~~d~~~la~~~~g~sg~di~~l~~~a 705 (813)
|..+.|=+.+.+ |+. ++-|...+..+...-+....+ +.+..+ ..++.+....+| |.++.++..
T Consensus 151 N~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~-dgLeaiifta~G----DMRQalNnL 215 (333)
T KOG0991|consen 151 NQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTD-DGLEAIIFTAQG----DMRQALNNL 215 (333)
T ss_pred cchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCc-chHHHhhhhccc----hHHHHHHHH
Confidence 766655444443 443 233333344333333332222 333332 235666655554 666555443
No 345
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.65 E-value=8e-08 Score=112.95 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=28.5
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~ 274 (813)
++.+.++..+.|+||+|||||||+++|++.+.
T Consensus 27 s~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~ 58 (556)
T PRK11819 27 SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK 58 (556)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44678899999999999999999999999863
No 346
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=7.3e-08 Score=99.52 Aligned_cols=98 Identities=34% Similarity=0.527 Sum_probs=73.0
Q ss_pred CceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhh-hhhcchhHHH-HHHHHHHHH----hcCCcEEEeccchhccC
Q 003525 249 PKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM-SKLAGESESN-LRKAFEEAE----KNAPSIIFIDELDSIAP 322 (813)
Q Consensus 249 ~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~-~~~~g~~~~~-l~~vf~~a~----~~~p~il~iDEid~l~~ 322 (813)
..+|||+||.|||||.||+.||+.++.+|-.-++..+. ..|+|+--++ +..+++.+. .....|++|||||.+..
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhc
Confidence 45799999999999999999999999999888887776 3577775444 455666542 23457999999999998
Q ss_pred CCCCCch---hHHHHHHHHHHHHhhcc
Q 003525 323 KREKTHG---EVERRIVSQLLTLMDGL 346 (813)
Q Consensus 323 ~~~~~~~---~~~~~v~~~Ll~~ld~~ 346 (813)
+...++- -...-+..+|+..++|-
T Consensus 177 kSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 177 KSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred cCCCCCcccccCchHHHHHHHHHHcCc
Confidence 7654321 12245667788888763
No 347
>PRK13409 putative ATPase RIL; Provisional
Probab=98.64 E-value=6.8e-08 Score=113.43 Aligned_cols=30 Identities=30% Similarity=0.320 Sum_probs=26.6
Q ss_pred CCCCceEEEECCCCCchHHHHHHHHHHhCC
Q 003525 246 VKPPKGILLYGPPGSGKTLIARAVANETGA 275 (813)
Q Consensus 246 i~~~~~vLL~GppGsGKTtLar~la~~l~~ 275 (813)
+.+++.+.|+||+|+|||||+++|++.+.+
T Consensus 96 i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p 125 (590)
T PRK13409 96 PKEGKVTGILGPNGIGKTTAVKILSGELIP 125 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccC
Confidence 467888999999999999999999998653
No 348
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.64 E-value=2.5e-07 Score=105.18 Aligned_cols=122 Identities=26% Similarity=0.385 Sum_probs=78.7
Q ss_pred CceeeeecCCCCChhHHHHHHHHHhCCe--EEEEeccchhh--------------------------hcccccHHHHHHH
Q 003525 522 SKGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLT--------------------------MWFGESEANVREI 573 (813)
Q Consensus 522 ~~gilL~GppGtGKT~la~ala~~~~~~--~i~v~~~~l~~--------------------------~~vg~se~~i~~v 573 (813)
...++|+||||||||+|++.+++.+... -..+....+.+ ..+|.....-.-.
T Consensus 210 G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~ 289 (506)
T PRK09862 210 GHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGE 289 (506)
T ss_pred CcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhhH
Confidence 4569999999999999999999876421 01111111110 0112111111124
Q ss_pred HHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccC-----------CCCcEEEEeccCCCC----
Q 003525 574 FDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----------AKKTVFIIGATNRPD---- 638 (813)
Q Consensus 574 F~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----------~~~~v~vi~aTn~~~---- 638 (813)
+..|.. .++|+||++.+ ...+++.|++.|+.-. ...++.+|+|+|...
T Consensus 290 l~~A~g---GvLfLDEi~e~--------------~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~ 352 (506)
T PRK09862 290 ISLAHN---GVLFLDELPEF--------------ERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHY 352 (506)
T ss_pred hhhccC---CEEecCCchhC--------------CHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceec
Confidence 555554 39999999775 2457788888775432 134689999999752
Q ss_pred -----------------CCCccccCCCCcccccccCCCCHH
Q 003525 639 -----------------IIDPALLRPGRLDQLIYIPLPDEA 662 (813)
Q Consensus 639 -----------------~ld~allr~gRf~~~i~~~~p~~~ 662 (813)
.|..+++. |||.++.+++|+.+
T Consensus 353 ~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 353 QGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred CCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 36678887 99999999998764
No 349
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.63 E-value=7.1e-08 Score=94.28 Aligned_cols=134 Identities=25% Similarity=0.358 Sum_probs=86.7
Q ss_pred ccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCC-----------------------
Q 003525 492 GLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA----------------------- 548 (813)
Q Consensus 492 g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~----------------------- 548 (813)
|++.+.+.|.+.+.. -+.+..+||+||+|+||+++|.++|..+-.
T Consensus 1 gq~~~~~~L~~~~~~------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 556666666655432 234566999999999999999999988621
Q ss_pred eEEEEeccchhhhcccccHHHHHHHHHHHHh----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCC
Q 003525 549 NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNA 624 (813)
Q Consensus 549 ~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~ 624 (813)
.++.++..+-.. .-.-..++++.+.... ....|++|||+|.+- ....|.||..|+..
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~--------------~~a~NaLLK~LEep-- 129 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT--------------EEAQNALLKTLEEP-- 129 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS---------------HHHHHHHHHHHHST--
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh--------------HHHHHHHHHHhcCC--
Confidence 233333322100 0123566666665433 345799999999973 45789999999954
Q ss_pred CCcEEEEeccCCCCCCCccccCCCCcccccccCCC
Q 003525 625 KKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 659 (813)
Q Consensus 625 ~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p 659 (813)
..++++|.+|+.++.|-|.+++ |.- .+.|++.
T Consensus 130 p~~~~fiL~t~~~~~il~TI~S--Rc~-~i~~~~l 161 (162)
T PF13177_consen 130 PENTYFILITNNPSKILPTIRS--RCQ-VIRFRPL 161 (162)
T ss_dssp TTTEEEEEEES-GGGS-HHHHT--TSE-EEEE---
T ss_pred CCCEEEEEEECChHHChHHHHh--hce-EEecCCC
Confidence 5678889999999999999987 774 5666543
No 350
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.63 E-value=1.4e-07 Score=95.62 Aligned_cols=33 Identities=24% Similarity=0.464 Sum_probs=28.9
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhCC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGA 275 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~ 275 (813)
+|.+.+++.|.|+||||||||||+|.||+...+
T Consensus 23 ~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 23 NLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 456788999999999999999999999997643
No 351
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=3.2e-07 Score=97.97 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=27.4
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHh
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANET 273 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l 273 (813)
+|.|-.++.+.|+||+|-|||||++.||...
T Consensus 284 ~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Ra 314 (807)
T KOG0066|consen 284 SLTIVYGRRYGLVGPNGMGKTTLLKHIAARA 314 (807)
T ss_pred ceEEEecceecccCCCCCchHHHHHHHHhhh
Confidence 5567789999999999999999999999763
No 352
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.62 E-value=1e-07 Score=111.92 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=28.2
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~ 274 (813)
++.+.++..+.|+||+|||||||+++|++.+.
T Consensus 25 s~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~ 56 (552)
T TIGR03719 25 SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK 56 (552)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34568899999999999999999999999863
No 353
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.62 E-value=1.2e-07 Score=103.48 Aligned_cols=169 Identities=24% Similarity=0.309 Sum_probs=101.8
Q ss_pred CceeeeecCCCCChhHHHHHHHHHhC---CeEEEEeccchhh-----hcccccHH-------HHHHHHHHHHhCCCeEEE
Q 003525 522 SKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLT-----MWFGESEA-------NVREIFDKARQSAPCVLF 586 (813)
Q Consensus 522 ~~gilL~GppGtGKT~la~ala~~~~---~~~i~v~~~~l~~-----~~vg~se~-------~i~~vF~~a~~~~p~il~ 586 (813)
...|+|+|++||||+++|+++-..+. .+|+.+++..+-. .++|.... .....|..+. ...||
T Consensus 29 ~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~ 105 (326)
T PRK11608 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERAD---GGTLF 105 (326)
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhccC---CCeEE
Confidence 34699999999999999999987753 6899999887531 22222110 0112233333 35899
Q ss_pred EecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccC--C-------CCcEEEEeccCCC-------CCCCccccCCCCc
Q 003525 587 FDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN--A-------KKTVFIIGATNRP-------DIIDPALLRPGRL 650 (813)
Q Consensus 587 iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~--~-------~~~v~vi~aTn~~-------~~ld~allr~gRf 650 (813)
||||+.+.. .+...|+..++... . ..++-||+||+.. ..+.+.|.. ||
T Consensus 106 l~~i~~L~~--------------~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l 169 (326)
T PRK11608 106 LDELATAPM--------------LVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RL 169 (326)
T ss_pred eCChhhCCH--------------HHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hc
Confidence 999999843 35666676665421 1 1247788888764 245566665 77
Q ss_pred c-cccccCCCCH--HHHHHHHHHHhc----cCCCC--Cccc---HHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 003525 651 D-QLIYIPLPDE--ASRLQIFKACLR----KSPIS--PDVD---LSALARYTHGFSGADITEVCQRACKYA 709 (813)
Q Consensus 651 ~-~~i~~~~p~~--~~r~~Il~~~l~----~~~~~--~~~d---~~~la~~~~g~sg~di~~l~~~a~~~a 709 (813)
. ..|.+|+... ++...+++.+++ +++.. ..++ +..|.....--+-++|+++++.|...+
T Consensus 170 ~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 170 AFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred CCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 4 4566666543 344555555542 22211 1222 344444443345689999998887654
No 354
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=4e-07 Score=98.30 Aligned_cols=129 Identities=20% Similarity=0.313 Sum_probs=92.5
Q ss_pred CCCceeeeecCCCCChhHHHHHHHHHhCC------------------------eEEEEeccchhhhcccccHHHHHHHHH
Q 003525 520 SPSKGVLFYGPPGCGKTLLAKAIANECQA------------------------NFISVKGPELLTMWFGESEANVREIFD 575 (813)
Q Consensus 520 ~~~~gilL~GppGtGKT~la~ala~~~~~------------------------~~i~v~~~~l~~~~vg~se~~i~~vF~ 575 (813)
+.+..+||+||.|+||+++|+++|..+-. .++.+...+ ++.+ .-..||++-+
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~I--~id~iR~l~~ 97 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKDI--GVDQVREINE 97 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCCC--CHHHHHHHHH
Confidence 34567999999999999999999987622 122232110 1111 2334555444
Q ss_pred H----HHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcc
Q 003525 576 K----ARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLD 651 (813)
Q Consensus 576 ~----a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~ 651 (813)
. +......|++||++|.+- ....|.||..|+. +..++++|.+|+.++.|-|.+++ |..
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m~--------------~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC~ 159 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERLT--------------EAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RCQ 159 (325)
T ss_pred HHhhccccCCceEEEEechhhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hce
Confidence 4 444555799999999973 3467999999995 45677888888889999999887 885
Q ss_pred cccccCCCCHHHHHHHHHHH
Q 003525 652 QLIYIPLPDEASRLQIFKAC 671 (813)
Q Consensus 652 ~~i~~~~p~~~~r~~Il~~~ 671 (813)
.+.|++|+.++..+.++..
T Consensus 160 -~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 160 -TWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred -EEeCCCCCHHHHHHHHHHH
Confidence 7899999998888777754
No 355
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.62 E-value=3e-07 Score=90.98 Aligned_cols=135 Identities=19% Similarity=0.286 Sum_probs=84.7
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHh-CC----eEEEEe
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-GA----FFFLIN 281 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l-~~----~~v~v~ 281 (813)
+++.+..+.||+|.++.++.+.-+..- ..-.+++|.||||+||||-+.+||.++ |. .++.+|
T Consensus 19 eKYrP~~l~dIVGNe~tv~rl~via~~-------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN 85 (333)
T KOG0991|consen 19 EKYRPSVLQDIVGNEDTVERLSVIAKE-------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN 85 (333)
T ss_pred HhhCchHHHHhhCCHHHHHHHHHHHHc-------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc
Confidence 467788899999999999988665542 223579999999999999999999886 32 246666
Q ss_pred chhhhhhhcchhHHHHHHHHHHHHh-c---CCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEe
Q 003525 282 GPEIMSKLAGESESNLRKAFEEAEK-N---APSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGA 357 (813)
Q Consensus 282 ~~~l~~~~~g~~~~~l~~vf~~a~~-~---~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~a 357 (813)
+++-.+- .-...++.. |.+-+- . .--|+++||+|.+... ....|...|+-+....++ +.+
T Consensus 86 ASdeRGI--DvVRn~IK~-FAQ~kv~lp~grhKIiILDEADSMT~g-----------AQQAlRRtMEiyS~ttRF--ala 149 (333)
T KOG0991|consen 86 ASDERGI--DVVRNKIKM-FAQKKVTLPPGRHKIIILDEADSMTAG-----------AQQALRRTMEIYSNTTRF--ALA 149 (333)
T ss_pred Ccccccc--HHHHHHHHH-HHHhhccCCCCceeEEEeeccchhhhH-----------HHHHHHHHHHHHcccchh--hhh
Confidence 6543211 111222222 322221 1 2259999999987532 224455556555444443 447
Q ss_pred cCCCCCCCHHhhc
Q 003525 358 TNRPNSIDPALRR 370 (813)
Q Consensus 358 tn~~~~ld~~l~r 370 (813)
||..+.|-+.+++
T Consensus 150 CN~s~KIiEPIQS 162 (333)
T KOG0991|consen 150 CNQSEKIIEPIQS 162 (333)
T ss_pred hcchhhhhhhHHh
Confidence 7877777655554
No 356
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.62 E-value=4.8e-08 Score=113.49 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=28.0
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~ 274 (813)
++.+.+++.+.|.||+|+|||||+++|++.+.
T Consensus 24 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 55 (501)
T PRK11288 24 SFDCRAGQVHALMGENGAGKSTLLKILSGNYQ 55 (501)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34567899999999999999999999998753
No 357
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=9.9e-07 Score=96.05 Aligned_cols=152 Identities=13% Similarity=0.176 Sum_probs=102.4
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCC--------eEEEEechh
Q 003525 213 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA--------FFFLINGPE 284 (813)
Q Consensus 213 ~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~--------~~v~v~~~~ 284 (813)
+|++|.|++..++.++..+.. -.-+..+||+||+|+|||++|+.+++.+-+ .+..+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 578999999999999888753 123456899999999999999999997632 122222110
Q ss_pred hhhhhcchhHHHHHHHHHHH----HhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCC
Q 003525 285 IMSKLAGESESNLRKAFEEA----EKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNR 360 (813)
Q Consensus 285 l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~ 360 (813)
+. .-.-..++.+.+.+ .....-|++||++|.+.. ...+.|+..+++.. ..+++|.+|+.
T Consensus 70 --~~--~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~-----------~a~naLLK~LEepp--~~t~~il~~~~ 132 (313)
T PRK05564 70 --KK--SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE-----------QAQNAFLKTIEEPP--KGVFIILLCEN 132 (313)
T ss_pred --CC--CCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH-----------HHHHHHHHHhcCCC--CCeEEEEEeCC
Confidence 11 11223455555533 233446999999887732 23467888888643 34455556677
Q ss_pred CCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHh
Q 003525 361 PNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHT 396 (813)
Q Consensus 361 ~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~ 396 (813)
++.+.+.+++ |. ..+++..|+.++-...+....
T Consensus 133 ~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 133 LEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred hHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHh
Confidence 8899999987 54 578899999888877776443
No 358
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.61 E-value=4.9e-06 Score=95.87 Aligned_cols=78 Identities=23% Similarity=0.293 Sum_probs=54.9
Q ss_pred cCCCCceeeeecCCCCChhHHHHHHHHHh---CCeEEEEeccchhhhc------cc----------------------cc
Q 003525 518 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMW------FG----------------------ES 566 (813)
Q Consensus 518 ~~~~~~gilL~GppGtGKT~la~ala~~~---~~~~i~v~~~~l~~~~------vg----------------------~s 566 (813)
|+.+...+|+.||||+|||+|+-.++... +-+.+++...+-...+ +| ..
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 56666679999999999999999888764 4455666544332110 00 01
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecchhhhh
Q 003525 567 EANVREIFDKARQSAPCVLFFDELDSIAT 595 (813)
Q Consensus 567 e~~i~~vF~~a~~~~p~il~iDEid~l~~ 595 (813)
+..+..+.+......|.+++||-+..+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 45667777788888899999999988754
No 359
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.61 E-value=6.6e-07 Score=91.27 Aligned_cols=40 Identities=43% Similarity=0.692 Sum_probs=33.6
Q ss_pred CCceeeeecCCCCChhHHHHHHHHHhC--CeEEEEeccchhh
Q 003525 521 PSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLT 560 (813)
Q Consensus 521 ~~~gilL~GppGtGKT~la~ala~~~~--~~~i~v~~~~l~~ 560 (813)
..+.+||.||||||||.||-+++.+++ .||..+.++++++
T Consensus 63 aGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS 104 (456)
T KOG1942|consen 63 AGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYS 104 (456)
T ss_pred cCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhh
Confidence 356799999999999999999999996 4677777777654
No 360
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=1.7e-06 Score=95.46 Aligned_cols=180 Identities=17% Similarity=0.222 Sum_probs=114.3
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeE-----------
Q 003525 209 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF----------- 277 (813)
Q Consensus 209 ~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~----------- 277 (813)
..+..+++|.|.+..++.+.+.+... .-+..+||+||+|+||+++|.++|+.+-..-
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~ 80 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP 80 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 35667889999999999998887641 2345799999999999999999998873210
Q ss_pred --EEE--ech-----------hhh--hh---hcc------hhHHHHHHHHHHH----HhcCCcEEEeccchhccCCCCCC
Q 003525 278 --FLI--NGP-----------EIM--SK---LAG------ESESNLRKAFEEA----EKNAPSIIFIDELDSIAPKREKT 327 (813)
Q Consensus 278 --v~v--~~~-----------~l~--~~---~~g------~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~ 327 (813)
+.+ .|+ ++. .. ..+ -.-..+|.+.+.. ....+.|++|||+|.+-
T Consensus 81 ~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------ 154 (365)
T PRK07471 81 TSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------ 154 (365)
T ss_pred ccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC------
Confidence 000 010 100 00 000 0123355554443 23467799999999773
Q ss_pred chhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhh
Q 003525 328 HGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDL 407 (813)
Q Consensus 328 ~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l 407 (813)
....+.|+..++... ...++|.+|+.++.+.+.+++ |. ..+.++.|+.++-.++|...... ..+..+
T Consensus 155 -----~~aanaLLK~LEepp--~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~ 221 (365)
T PRK07471 155 -----ANAANALLKVLEEPP--ARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPR 221 (365)
T ss_pred -----HHHHHHHHHHHhcCC--CCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc---CCHHHH
Confidence 234567777777543 345666688888888888876 54 56899999999988888754321 111122
Q ss_pred HHHHhhcCCCch
Q 003525 408 ERVAKDTHGYVG 419 (813)
Q Consensus 408 ~~la~~t~g~~~ 419 (813)
..++..+.|-.+
T Consensus 222 ~~l~~~s~Gsp~ 233 (365)
T PRK07471 222 AALAALAEGSVG 233 (365)
T ss_pred HHHHHHcCCCHH
Confidence 445555555443
No 361
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.60 E-value=1e-07 Score=113.36 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=28.4
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~ 274 (813)
++.+.+++.+.|+||+|||||||+++|++.+.
T Consensus 36 s~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~ 67 (623)
T PRK10261 36 SFSLQRGETLAIVGESGSGKSVTALALMRLLE 67 (623)
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 34567899999999999999999999999864
No 362
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.59 E-value=1.8e-07 Score=109.35 Aligned_cols=197 Identities=22% Similarity=0.283 Sum_probs=117.0
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHh---CCeEEEEeccchhh
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT 560 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~---~~~~i~v~~~~l~~ 560 (813)
...++++.|.....+.+.+.+... . .....|+|+|++|||||++|++|...+ +.+|+.+++..+..
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~----------a-~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVV----------A-RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHH----------h-CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 346677888776666655543321 1 223469999999999999999999886 46899999987632
Q ss_pred hc-----ccccHHH-------HHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccC-----
Q 003525 561 MW-----FGESEAN-------VREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN----- 623 (813)
Q Consensus 561 ~~-----vg~se~~-------i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~----- 623 (813)
.+ +|..... -...|..+ ....||||||+.+.. .+...|+..++...
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~~--------------~~Q~~Ll~~l~~~~~~~~~ 323 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEISP--------------AFQAKLLRVLQEGEFERVG 323 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCCH--------------HHHHHHHHHHhcCcEEECC
Confidence 21 1211000 00112222 235999999999843 35667777775421
Q ss_pred C----CCcEEEEeccCCC-------CCCCccccCCCCcc-cccccCCCC--HHHHHHHHHHHhccC----CCCCccc---
Q 003525 624 A----KKTVFIIGATNRP-------DIIDPALLRPGRLD-QLIYIPLPD--EASRLQIFKACLRKS----PISPDVD--- 682 (813)
Q Consensus 624 ~----~~~v~vi~aTn~~-------~~ld~allr~gRf~-~~i~~~~p~--~~~r~~Il~~~l~~~----~~~~~~d--- 682 (813)
+ ..++-+|+||+.. ..+.+.|.. |+. ..|.+|+.. .++...+++.++++. +....++
T Consensus 324 ~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a 401 (534)
T TIGR01817 324 GNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSA 401 (534)
T ss_pred CCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHH
Confidence 1 1247788888764 123334443 553 356677665 345556666666432 2111222
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 003525 683 LSALARYTHGFSGADITEVCQRACKYAI 710 (813)
Q Consensus 683 ~~~la~~~~g~sg~di~~l~~~a~~~a~ 710 (813)
+..|.....--+-++|+++++.|+..+-
T Consensus 402 ~~~L~~~~WPGNvrEL~~v~~~a~~~~~ 429 (534)
T TIGR01817 402 IRVLMSCKWPGNVRELENCLERTATLSR 429 (534)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 4445555444467899999999886553
No 363
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=4.5e-07 Score=98.85 Aligned_cols=150 Identities=18% Similarity=0.267 Sum_probs=100.5
Q ss_pred CCCceeeeecCCCCChhHHHHHHHHHhCC------------------------eEEEEeccch-hhhcccccHHHHHHHH
Q 003525 520 SPSKGVLFYGPPGCGKTLLAKAIANECQA------------------------NFISVKGPEL-LTMWFGESEANVREIF 574 (813)
Q Consensus 520 ~~~~gilL~GppGtGKT~la~ala~~~~~------------------------~~i~v~~~~l-~~~~vg~se~~i~~vF 574 (813)
+.+..+||+||+|+||+++|.++|..+-. .+..+.+..- .+-.+.+....+..+.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 44567999999999999999999987621 1233322100 0011222223333444
Q ss_pred HHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCccccc
Q 003525 575 DKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLI 654 (813)
Q Consensus 575 ~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i 654 (813)
..+......|++||++|.+- ...-|.||..|+. +..+.++|.+|+.|+.|-|-+++ |.. .+
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~~ 162 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLT--------------DAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR-LH 162 (334)
T ss_pred hccccCCceEEEEcchHhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc-cc
Confidence 45555566799999999983 3466999999995 45678888899999999999997 887 68
Q ss_pred ccCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCC
Q 003525 655 YIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHG 692 (813)
Q Consensus 655 ~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g 692 (813)
.|++|+.++..+.+... .+++. .+...++..+.|
T Consensus 163 ~~~~~~~~~~~~~L~~~---~~~~~-~~a~~~~~la~G 196 (334)
T PRK07993 163 YLAPPPEQYALTWLSRE---VTMSQ-DALLAALRLSAG 196 (334)
T ss_pred cCCCCCHHHHHHHHHHc---cCCCH-HHHHHHHHHcCC
Confidence 99999998877777542 23332 224455555555
No 364
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=5.1e-07 Score=94.03 Aligned_cols=83 Identities=27% Similarity=0.498 Sum_probs=61.0
Q ss_pred CcEEEeccchhccCCCCCCchhHHH-HHHHHHHHHhhccc--------cCCcEEEEEec----CCCCCCCHHhhccCCcc
Q 003525 309 PSIIFIDELDSIAPKREKTHGEVER-RIVSQLLTLMDGLK--------SRAHVIVMGAT----NRPNSIDPALRRFGRFD 375 (813)
Q Consensus 309 p~il~iDEid~l~~~~~~~~~~~~~-~v~~~Ll~~ld~~~--------~~~~vivi~at----n~~~~ld~~l~r~~Rf~ 375 (813)
-.|+||||||.++.+.+.+.+++.+ -+...|+-+++|.. ....+++|++- ..|.+|-|.|+. ||.
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--RfP 328 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--RFP 328 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--CCc
Confidence 4699999999999887644334433 44456777776643 23467777543 367888888885 999
Q ss_pred eEEEcCCCCHHHHHHHHH
Q 003525 376 REIDIGVPDEVGRLEILR 393 (813)
Q Consensus 376 ~~i~i~~p~~~~R~~Il~ 393 (813)
-.+++...+.+.-.+||.
T Consensus 329 IRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 329 IRVELDALTKEDFERILT 346 (444)
T ss_pred eEEEcccCCHHHHHHHHc
Confidence 999999999999888885
No 365
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=2.2e-06 Score=94.24 Aligned_cols=109 Identities=23% Similarity=0.310 Sum_probs=68.5
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEE----EEec--------------------------------hhhh
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFF----LING--------------------------------PEIM 286 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v----~v~~--------------------------------~~l~ 286 (813)
++.+..|+.+.|+|++|+|||||+|+||+- ....+ .+.+ .++.
T Consensus 100 ~L~L~~GrRYGLvGrNG~GKsTLLRaia~~-~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~ 178 (582)
T KOG0062|consen 100 NLTLSRGRRYGLVGRNGIGKSTLLRAIANG-QVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIY 178 (582)
T ss_pred ceeeecccccceeCCCCCcHHHHHHHHHhc-CcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHH
Confidence 456677999999999999999999999981 11000 0000 1111
Q ss_pred hh---hcc-------------hhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCC
Q 003525 287 SK---LAG-------------ESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRA 350 (813)
Q Consensus 287 ~~---~~g-------------~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~ 350 (813)
.+ ..| ....+.+..+..|.-..|++|++|| +.+..+-..+.+|.+.+..+.
T Consensus 179 ~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDE----------PTNhLDv~av~WLe~yL~t~~--- 245 (582)
T KOG0062|consen 179 DKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDE----------PTNHLDVVAVAWLENYLQTWK--- 245 (582)
T ss_pred HHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecC----------CcccchhHHHHHHHHHHhhCC---
Confidence 10 000 1234556777788888999999999 555555666777777776543
Q ss_pred cEEEEEecCCCCCCCH
Q 003525 351 HVIVMGATNRPNSIDP 366 (813)
Q Consensus 351 ~vivi~atn~~~~ld~ 366 (813)
+.++..+++...||.
T Consensus 246 -~T~liVSHDr~FLn~ 260 (582)
T KOG0062|consen 246 -ITSLIVSHDRNFLNT 260 (582)
T ss_pred -ceEEEEeccHHHHHH
Confidence 444445676655554
No 366
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.57 E-value=6e-07 Score=100.33 Aligned_cols=135 Identities=20% Similarity=0.253 Sum_probs=75.8
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHhCC--eEEEEech-hhhhhhcchh-HHHH--HHHHHHHHhc---CCcEEEeccc
Q 003525 247 KPPKGILLYGPPGSGKTLIARAVANETGA--FFFLINGP-EIMSKLAGES-ESNL--RKAFEEAEKN---APSIIFIDEL 317 (813)
Q Consensus 247 ~~~~~vLL~GppGsGKTtLar~la~~l~~--~~v~v~~~-~l~~~~~g~~-~~~l--~~vf~~a~~~---~p~il~iDEi 317 (813)
..+.+|||.||||||||++|++|+...+. +|..+.+. .......|.. -... ...|.....+ ...++|+|||
T Consensus 37 lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI 116 (498)
T PRK13531 37 LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEI 116 (498)
T ss_pred ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccc
Confidence 45789999999999999999999987653 33333321 0111112211 0000 1112111111 2348999999
Q ss_pred hhccCCCCCCchhHHHHHHHHHHHHhhccc--------cCCcEEEEEecCCCCC---CCHHhhccCCcceEEEcCCCCH-
Q 003525 318 DSIAPKREKTHGEVERRIVSQLLTLMDGLK--------SRAHVIVMGATNRPNS---IDPALRRFGRFDREIDIGVPDE- 385 (813)
Q Consensus 318 d~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--------~~~~vivi~atn~~~~---ld~~l~r~~Rf~~~i~i~~p~~- 385 (813)
..+. ....+.|+..|.+-. .-+..+++++||.... ..+++.. ||...+.+++|+.
T Consensus 117 ~ras-----------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~ 183 (498)
T PRK13531 117 WKAG-----------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQDK 183 (498)
T ss_pred ccCC-----------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCch
Confidence 7553 234567777774321 1122344555564322 2235554 8888899999974
Q ss_pred HHHHHHHHH
Q 003525 386 VGRLEILRI 394 (813)
Q Consensus 386 ~~R~~Il~~ 394 (813)
+.-.++|..
T Consensus 184 ~~e~~lL~~ 192 (498)
T PRK13531 184 ANFRSMLTS 192 (498)
T ss_pred HHHHHHHHc
Confidence 555777764
No 367
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.56 E-value=2.3e-07 Score=106.78 Aligned_cols=195 Identities=23% Similarity=0.326 Sum_probs=112.0
Q ss_pred cccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHH-----------hCCeEEEE
Q 003525 485 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE-----------CQANFISV 553 (813)
Q Consensus 485 ~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~-----------~~~~~i~v 553 (813)
..++++.|.....+.+.+.+.. +. .....|||+|++||||+++|++|-.. .+.+|+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~----------~A-~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILL----------YA-RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHH----------Hh-CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 3567788887766666554432 11 12346999999999999999999877 35689999
Q ss_pred eccchhhh-----cccccHH--------HHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHh
Q 003525 554 KGPELLTM-----WFGESEA--------NVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMD 620 (813)
Q Consensus 554 ~~~~l~~~-----~vg~se~--------~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld 620 (813)
+|..+-.. .+|..+. .-.-+|+.|.. ..||||||+.+.. .+...||..|+
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~--------------~~Q~kLl~~L~ 347 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEMPL--------------PLQTRLLRVLE 347 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhCCH--------------HHHHHHHhhhh
Confidence 98865321 2222111 11124555543 4899999999843 35666776665
Q ss_pred ccC-----C----CCcEEEEeccCCC--CCC-----CccccCCCCcc-cccccCCCCH--HHHHHHHHHHhcc----CCC
Q 003525 621 GMN-----A----KKTVFIIGATNRP--DII-----DPALLRPGRLD-QLIYIPLPDE--ASRLQIFKACLRK----SPI 677 (813)
Q Consensus 621 ~~~-----~----~~~v~vi~aTn~~--~~l-----d~allr~gRf~-~~i~~~~p~~--~~r~~Il~~~l~~----~~~ 677 (813)
.-. + .-++-||++||.. +.+ .+.|.- |+. ..|++|+... ++...+++.++++ .+.
T Consensus 348 e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~ 425 (538)
T PRK15424 348 EKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RLSILRLQLPPLRERVADILPLAESFLKQSLAALSA 425 (538)
T ss_pred cCeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHH--HhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCC
Confidence 321 1 1245788888864 112 222322 332 3344554432 3344555666644 222
Q ss_pred CCcccH--------HHHHHHcCCCCHHHHHHHHHHHHHHH
Q 003525 678 SPDVDL--------SALARYTHGFSGADITEVCQRACKYA 709 (813)
Q Consensus 678 ~~~~d~--------~~la~~~~g~sg~di~~l~~~a~~~a 709 (813)
.-..+. ..|.....--+-++|++++++++..+
T Consensus 426 ~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~ 465 (538)
T PRK15424 426 PFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFL 465 (538)
T ss_pred CCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 211111 23333333345689999999987753
No 368
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.56 E-value=1.7e-07 Score=102.61 Aligned_cols=199 Identities=24% Similarity=0.287 Sum_probs=120.4
Q ss_pred cccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHh----CCeEEEEeccchhh
Q 003525 485 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELLT 560 (813)
Q Consensus 485 ~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~----~~~~i~v~~~~l~~ 560 (813)
..+.+++|....-+.+.+.+.. -......+|++|++||||+++|++|...+ ..||+.++|..+..
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~-----------~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKA-----------YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHh-----------hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 3456666665544444443332 01223459999999999999999998554 45899999987743
Q ss_pred h-------------cccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccC----
Q 003525 561 M-------------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN---- 623 (813)
Q Consensus 561 ~-------------~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~---- 623 (813)
. |.| ....-.-+|+.|... .||+|||..+.+ .....||+.||...
T Consensus 144 n~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG---tLfLDEI~~LP~--------------~~Q~kLl~~le~g~~~rv 205 (403)
T COG1221 144 NLQEAELFGHEKGAFTG-AQGGKAGLFEQANGG---TLFLDEIHRLPP--------------EGQEKLLRVLEEGEYRRV 205 (403)
T ss_pred CHHHHHHhccccceeec-ccCCcCchheecCCC---EEehhhhhhCCH--------------hHHHHHHHHHHcCceEec
Confidence 2 222 122333466666554 999999999854 35677788887632
Q ss_pred -----CCCcEEEEeccCCC--CCCCc--cccCCCCcccccccCCCCH--HHHHHHHHHHh----ccCCCCCcccH----H
Q 003525 624 -----AKKTVFIIGATNRP--DIIDP--ALLRPGRLDQLIYIPLPDE--ASRLQIFKACL----RKSPISPDVDL----S 684 (813)
Q Consensus 624 -----~~~~v~vi~aTn~~--~~ld~--allr~gRf~~~i~~~~p~~--~~r~~Il~~~l----~~~~~~~~~d~----~ 684 (813)
...+|.+|+|||-. +.+-. .+.|. |+...|.+|+.-. +++..+.+.++ ++.+.....+. .
T Consensus 206 G~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~ 284 (403)
T COG1221 206 GGSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALR 284 (403)
T ss_pred CCCCCcCCCceeeeccccCHHHHHHhhcchhhh-hcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 13468889988742 33333 45541 5566677776654 33444444444 44444332322 2
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Q 003525 685 ALARYTHGFSGADITEVCQRACKYAIREN 713 (813)
Q Consensus 685 ~la~~~~g~sg~di~~l~~~a~~~a~~~~ 713 (813)
.|....---+-++++++++.++..+.-..
T Consensus 285 ~L~~y~~pGNirELkN~Ve~~~~~~~~~~ 313 (403)
T COG1221 285 ALLAYDWPGNIRELKNLVERAVAQASGEG 313 (403)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHHhcccc
Confidence 23333222256899999999988875443
No 369
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.53 E-value=2.8e-08 Score=90.80 Aligned_cols=104 Identities=28% Similarity=0.401 Sum_probs=56.4
Q ss_pred eEEEECCCCCchHHHHHHHHHHhCCeEEEEech-hhh-----hhhcchhHH-----HHHHHHHHHHhcCCcEEEeccchh
Q 003525 251 GILLYGPPGSGKTLIARAVANETGAFFFLINGP-EIM-----SKLAGESES-----NLRKAFEEAEKNAPSIIFIDELDS 319 (813)
Q Consensus 251 ~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~-~l~-----~~~~g~~~~-----~l~~vf~~a~~~~p~il~iDEid~ 319 (813)
||||.|+||+|||++++++|+.++..+..|.+. +++ +...-.... .-.-+| ..|+++|||..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 689999999999999999999999999888773 332 111100000 001111 25999999987
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHhhccc---------cCCcEEEEEecCCCC-----CCCHHhhccCCc
Q 003525 320 IAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAHVIVMGATNRPN-----SIDPALRRFGRF 374 (813)
Q Consensus 320 l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~vivi~atn~~~-----~ld~~l~r~~Rf 374 (813)
..+ ++.+.|++.|.+-+ -...++||+|.|+.+ .+++++.. ||
T Consensus 74 app-----------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 APP-----------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp S-H-----------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred CCH-----------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 754 34577777775422 124588899999765 45666654 55
No 370
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.52 E-value=2.1e-07 Score=96.14 Aligned_cols=40 Identities=25% Similarity=0.364 Sum_probs=31.8
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe--EEEEec
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLING 282 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~--~v~v~~ 282 (813)
++.+.+++.+.|.||+|||||||+|+|++.+.+. .+.+++
T Consensus 22 s~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g 63 (258)
T COG1120 22 SFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDG 63 (258)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECC
Confidence 3456788899999999999999999999987532 255554
No 371
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=8.8e-07 Score=95.49 Aligned_cols=154 Identities=22% Similarity=0.256 Sum_probs=99.9
Q ss_pred CCCceeeeecCCCCChhHHHHHHHHHhCC---------------------eEEEEe-ccchhh-hc-ccccHHHHHHHHH
Q 003525 520 SPSKGVLFYGPPGCGKTLLAKAIANECQA---------------------NFISVK-GPELLT-MW-FGESEANVREIFD 575 (813)
Q Consensus 520 ~~~~gilL~GppGtGKT~la~ala~~~~~---------------------~~i~v~-~~~l~~-~~-vg~se~~i~~vF~ 575 (813)
+.+..+||+||+|+||+++|.++|..+-. .+..+. .++-.+ +. ..-.-..||++-+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 34557999999999999999999976521 122221 111000 00 0001345666665
Q ss_pred HHHh----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcc
Q 003525 576 KARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLD 651 (813)
Q Consensus 576 ~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~ 651 (813)
.+.. ....|++||++|.+- ....|.||..|+. +..++++|.+|+.++.|-|-+.+ |+.
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RCq 165 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAIN--------------RAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RCQ 165 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhC--------------HHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hhe
Confidence 5433 334799999999983 3456899999985 44567788888889989899987 986
Q ss_pred cccccCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHH
Q 003525 652 QLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGAD 697 (813)
Q Consensus 652 ~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~d 697 (813)
.+.|++|+.++-.+.+... +++. .+...++....|--+.-
T Consensus 166 -~i~~~~~~~~~~~~~L~~~----~~~~-~~a~~~~~l~~G~p~~A 205 (319)
T PRK08769 166 -RLEFKLPPAHEALAWLLAQ----GVSE-RAAQEALDAARGHPGLA 205 (319)
T ss_pred -EeeCCCcCHHHHHHHHHHc----CCCh-HHHHHHHHHcCCCHHHH
Confidence 7889999998877777642 3332 22445566666544433
No 372
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.51 E-value=4e-07 Score=108.95 Aligned_cols=195 Identities=21% Similarity=0.229 Sum_probs=108.8
Q ss_pred cccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhC---CeEEEEeccchh--
Q 003525 485 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELL-- 559 (813)
Q Consensus 485 ~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~---~~~i~v~~~~l~-- 559 (813)
..|+++.|.....+.+.+.+.. . ......|+|+|++||||+++|+++...+. .+|+.+++..+-
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~----------~-a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQ----------A-AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred ccccceEECCHHHHHHHHHHHH----------H-hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 3466677766554444333221 1 12234599999999999999999988764 689999987652
Q ss_pred ---hhccccc----HHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccC----CC---
Q 003525 560 ---TMWFGES----EANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN----AK--- 625 (813)
Q Consensus 560 ---~~~vg~s----e~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~----~~--- 625 (813)
+.++|.. .......|+.| ....||||||+.+.. .+...|+..++.-. +.
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~~--------------~~Q~~Ll~~l~~~~~~~~~~~~~ 453 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLSP--------------ELQSALLQVLKTGVITRLDSRRL 453 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCCH--------------HHHHHHHHHHhcCcEEeCCCCce
Confidence 2233321 00001123333 235899999999743 35566666665321 11
Q ss_pred --CcEEEEeccCCCC-------CCCccccCCCCcc-cccccCCCCH--HHHHHHHHHHhccC----CCCCccc---HHHH
Q 003525 626 --KTVFIIGATNRPD-------IIDPALLRPGRLD-QLIYIPLPDE--ASRLQIFKACLRKS----PISPDVD---LSAL 686 (813)
Q Consensus 626 --~~v~vi~aTn~~~-------~ld~allr~gRf~-~~i~~~~p~~--~~r~~Il~~~l~~~----~~~~~~d---~~~l 686 (813)
-++-||+|||..- .+.+.|.- |+. ..|.+|+... ++...+++.++++. +....+. +..|
T Consensus 454 ~~~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L 531 (638)
T PRK11388 454 IPVDVRVIATTTADLAMLVEQNRFSRQLYY--ALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARL 531 (638)
T ss_pred EEeeEEEEEeccCCHHHHHhcCCChHHHhh--hhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHH
Confidence 1567899988642 12222222 332 3444554432 23344555555332 1111122 4445
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHH
Q 003525 687 ARYTHGFSGADITEVCQRACKYA 709 (813)
Q Consensus 687 a~~~~g~sg~di~~l~~~a~~~a 709 (813)
.....--+-++|+++++.|...+
T Consensus 532 ~~y~WPGNvreL~~~l~~~~~~~ 554 (638)
T PRK11388 532 VSYRWPGNDFELRSVIENLALSS 554 (638)
T ss_pred HcCCCCChHHHHHHHHHHHHHhC
Confidence 55443446689999999887654
No 373
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.50 E-value=3.8e-06 Score=89.92 Aligned_cols=64 Identities=39% Similarity=0.587 Sum_probs=43.8
Q ss_pred cccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhC--CeEEEEechhh
Q 003525 214 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG--AFFFLINGPEI 285 (813)
Q Consensus 214 ~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~--~~~v~v~~~~l 285 (813)
.+.++|+.++-+..--++++ .+ -+--.++++||.||||||||.||-++|+++| .+|+.++++++
T Consensus 23 ~~GlVGQ~~AReAagiiv~m-------Ik-~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi 88 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDM-------IK-EGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI 88 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHH-------HH-TT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred cccccChHHHHHHHHHHHHH-------Hh-cccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence 35688988887765444433 11 1334689999999999999999999999997 56777777665
No 374
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.49 E-value=9.3e-07 Score=96.75 Aligned_cols=145 Identities=23% Similarity=0.343 Sum_probs=93.1
Q ss_pred ccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhC----------------------
Q 003525 217 VGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---------------------- 274 (813)
Q Consensus 217 i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~---------------------- 274 (813)
+.|.++....+....... + .-+..+||+||||+|||++|.++|+.+.
T Consensus 3 ~~~~~~~~~~l~~~~~~~----------~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~ 71 (325)
T COG0470 3 LVPWQEAVKRLLVQALES----------G-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAG 71 (325)
T ss_pred cccchhHHHHHHHHHHhc----------C-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhc
Confidence 455556666665554321 1 1122599999999999999999999886
Q ss_pred --CeEEEEechhhhhhhcchhHHHHHHHHHHHHh----cCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhcccc
Q 003525 275 --AFFFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKS 348 (813)
Q Consensus 275 --~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~ 348 (813)
..++.++.++..... .....++.+.+.... ...-+++|||+|.+.. ...+.++..+.....
T Consensus 72 ~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~-----------~A~nallk~lEep~~ 138 (325)
T COG0470 72 NHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE-----------DAANALLKTLEEPPK 138 (325)
T ss_pred CCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH-----------HHHHHHHHHhccCCC
Confidence 456777765543221 123445555544332 2346999999998854 334667777765443
Q ss_pred CCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHH
Q 003525 349 RAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 390 (813)
Q Consensus 349 ~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~ 390 (813)
+..++.+||.++.+-+.+++ |. ..+.|.+|.......
T Consensus 139 --~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~ 175 (325)
T COG0470 139 --NTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIA 175 (325)
T ss_pred --CeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHH
Confidence 56677788999999888887 44 456777655444433
No 375
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.48 E-value=1.4e-06 Score=101.19 Aligned_cols=195 Identities=23% Similarity=0.284 Sum_probs=113.2
Q ss_pred cccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHh---CCeEEEEeccchhhh--
Q 003525 487 WEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM-- 561 (813)
Q Consensus 487 ~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~---~~~~i~v~~~~l~~~-- 561 (813)
..+++|.....+.+.+.+.. .. .....|||+|++||||+++|+++...+ +.+|+.+++..+-..
T Consensus 186 ~~~iig~s~~~~~~~~~i~~----------~a-~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEV----------VA-ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred CCceeecCHHHHHHHHHHHH----------Hh-CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 45566666555555444332 11 224469999999999999999999886 468999998876321
Q ss_pred ---cccccHH-------HHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccC-----C--
Q 003525 562 ---WFGESEA-------NVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----A-- 624 (813)
Q Consensus 562 ---~vg~se~-------~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----~-- 624 (813)
.+|.... .....|+.|. ...||||||+.+.. .+...|+..++... +
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~~--------------~~Q~~Ll~~l~~~~~~~~g~~~ 317 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELPL--------------ALQAKLLRVLQYGEIQRVGSDR 317 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCCH--------------HHHHHHHHHHhcCCEeeCCCCc
Confidence 2221100 0011344443 34899999999843 35566666665321 1
Q ss_pred --CCcEEEEeccCCCC-------CCCccccCCCCcc-cccccCCCCH--HHHHHHHHHHhcc----CCCC-Cccc---HH
Q 003525 625 --KKTVFIIGATNRPD-------IIDPALLRPGRLD-QLIYIPLPDE--ASRLQIFKACLRK----SPIS-PDVD---LS 684 (813)
Q Consensus 625 --~~~v~vi~aTn~~~-------~ld~allr~gRf~-~~i~~~~p~~--~~r~~Il~~~l~~----~~~~-~~~d---~~ 684 (813)
..++-||++||+.- .+.+.|.. |+. ..|++|+... ++.-.+++.++++ ++.. ..++ +.
T Consensus 318 ~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~ 395 (509)
T PRK05022 318 SLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQA 395 (509)
T ss_pred ceecceEEEEecCCCHHHHHHcCCccHHHHh--cccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 12578888888741 24444443 553 3355555432 2334444444432 2211 1122 44
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 003525 685 ALARYTHGFSGADITEVCQRACKYAIR 711 (813)
Q Consensus 685 ~la~~~~g~sg~di~~l~~~a~~~a~~ 711 (813)
.|.....--+-++|++++++|+..+..
T Consensus 396 ~L~~y~WPGNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 396 ALLAYDWPGNVRELEHVISRAALLARA 422 (509)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhcCC
Confidence 455554445678999999999887654
No 376
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.48 E-value=5.4e-06 Score=88.22 Aligned_cols=173 Identities=17% Similarity=0.286 Sum_probs=96.7
Q ss_pred ceEEEECCCCCchHHHHHHHHHHhCC-eEE--E-Eec----hhhhh---hhcc-----hh-HH---HHHHHH-HHHHhcC
Q 003525 250 KGILLYGPPGSGKTLIARAVANETGA-FFF--L-ING----PEIMS---KLAG-----ES-ES---NLRKAF-EEAEKNA 308 (813)
Q Consensus 250 ~~vLL~GppGsGKTtLar~la~~l~~-~~v--~-v~~----~~l~~---~~~g-----~~-~~---~l~~vf-~~a~~~~ 308 (813)
..++|+||+|+||||+++.+++.+.. .+. . +++ .++.. ...| .. .. .+...+ .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35899999999999999999998763 221 1 111 11111 0011 11 11 122222 2233456
Q ss_pred CcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccc-cCCcE--EEEEecCCCCCC-C---HHhhccCCcceEEEcC
Q 003525 309 PSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK-SRAHV--IVMGATNRPNSI-D---PALRRFGRFDREIDIG 381 (813)
Q Consensus 309 p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-~~~~v--ivi~atn~~~~l-d---~~l~r~~Rf~~~i~i~ 381 (813)
+.++++||++.+.+. ....|..+.+... ....+ ++++.+...+.+ + ..+.+ |+...++++
T Consensus 124 ~~vliiDe~~~l~~~-----------~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~l~ 190 (269)
T TIGR03015 124 RALLVVDEAQNLTPE-----------LLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCHLG 190 (269)
T ss_pred CeEEEEECcccCCHH-----------HHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeeeCC
Confidence 779999999876321 1222222222111 12222 232322211111 1 12333 667788999
Q ss_pred CCCHHHHHHHHHHHhcCCc-----cccchhhHHHHhhcCCCchHHHHHHHHHHHHHHHHh
Q 003525 382 VPDEVGRLEILRIHTKNMK-----LAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIRE 436 (813)
Q Consensus 382 ~p~~~~R~~Il~~~~~~~~-----l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 436 (813)
..+.++..+++...+.... ...+..++.+...+.|+... +..+|..+...+...
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~-i~~l~~~~~~~a~~~ 249 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL-INILCDRLLLSAFLE 249 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH-HHHHHHHHHHHHHHc
Confidence 9999998888887665332 12345678889999998655 888888887766554
No 377
>PRK04132 replication factor C small subunit; Provisional
Probab=98.47 E-value=2.5e-06 Score=102.13 Aligned_cols=154 Identities=20% Similarity=0.207 Sum_probs=110.3
Q ss_pred CCceEEEEC--CCCCchHHHHHHHHHHh-----CCeEEEEechhhhhhhcchhHHHHHHHHHHHHhcC------CcEEEe
Q 003525 248 PPKGILLYG--PPGSGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA------PSIIFI 314 (813)
Q Consensus 248 ~~~~vLL~G--ppGsGKTtLar~la~~l-----~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~------p~il~i 314 (813)
|+-+-+..| |++.||||+|++||+++ +..++.+|+++..+ -..++.++..+.... ..|+||
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 444566779 99999999999999997 45789999977422 234566555543322 259999
Q ss_pred ccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHH
Q 003525 315 DELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRI 394 (813)
Q Consensus 315 DEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~ 394 (813)
||+|.+.. ...+.|+..|+.... .+.+|.+||++..+.+++++ |. ..+.|..|+.++-...|+.
T Consensus 637 DEaD~Lt~-----------~AQnALLk~lEep~~--~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~ 700 (846)
T PRK04132 637 DEADALTQ-----------DAQQALRRTMEMFSS--NVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRY 700 (846)
T ss_pred ECcccCCH-----------HHHHHHHHHhhCCCC--CeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHH
Confidence 99999843 234678888876443 56788889999999999987 64 6789999998888888876
Q ss_pred HhcCCccc-cchhhHHHHhhcCCCchHHHH
Q 003525 395 HTKNMKLA-EDVDLERVAKDTHGYVGSDLA 423 (813)
Q Consensus 395 ~~~~~~l~-~~~~l~~la~~t~g~~~~dl~ 423 (813)
.+....+. ++..+..++..++|-...-+.
T Consensus 701 I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 701 IAENEGLELTEEGLQAILYIAEGDMRRAIN 730 (846)
T ss_pred HHHhcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 65543332 344678888888776554443
No 378
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=3.5e-07 Score=98.07 Aligned_cols=97 Identities=35% Similarity=0.568 Sum_probs=71.8
Q ss_pred CceEEEECCCCCchHHHHHHHHHHhCCeEEEEechhhh-hhhcchh-HHHHHHHHHHHH----hcCCcEEEeccchhccC
Q 003525 249 PKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM-SKLAGES-ESNLRKAFEEAE----KNAPSIIFIDELDSIAP 322 (813)
Q Consensus 249 ~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~~l~-~~~~g~~-~~~l~~vf~~a~----~~~p~il~iDEid~l~~ 322 (813)
..+|||.||+|||||.|++.||..++.++...+|..+. ..|+|+- +..+..+++.|. ..+..|+||||+|.+..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 45799999999999999999999999999999998876 4577764 555677777653 23557999999999984
Q ss_pred CCCC-C--chhHHHHHHHHHHHHhhc
Q 003525 323 KREK-T--HGEVERRIVSQLLTLMDG 345 (813)
Q Consensus 323 ~~~~-~--~~~~~~~v~~~Ll~~ld~ 345 (813)
.... . .+--.+-+...|+.++++
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred cCccccccccccchhHHHHHHHHhcc
Confidence 4321 1 111123456678888875
No 379
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.47 E-value=2.4e-07 Score=92.33 Aligned_cols=46 Identities=30% Similarity=0.578 Sum_probs=35.1
Q ss_pred cccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhC
Q 003525 214 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (813)
Q Consensus 214 ~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~ 274 (813)
|.+|.|++..+..+.-... | +.++||+||||||||++|+.+...++
T Consensus 2 f~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred hhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 6789999998887754432 1 46899999999999999999998875
No 380
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.46 E-value=2.6e-06 Score=89.55 Aligned_cols=177 Identities=15% Similarity=0.237 Sum_probs=105.0
Q ss_pred CceeeeecCCCCChhHHHHHHHHHhC---------CeEEEEeccchhh--------------hc-cccc-HHHHHHHHHH
Q 003525 522 SKGVLFYGPPGCGKTLLAKAIANECQ---------ANFISVKGPELLT--------------MW-FGES-EANVREIFDK 576 (813)
Q Consensus 522 ~~gilL~GppGtGKT~la~ala~~~~---------~~~i~v~~~~l~~--------------~~-vg~s-e~~i~~vF~~ 576 (813)
..++||+|++|.|||++++.+..... .|.+.+.++.--+ .| ...+ .+.-..+..-
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~l 140 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRL 140 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHH
Confidence 45799999999999999999997642 3566776543211 01 0111 1222233444
Q ss_pred HHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCC--cEEEEeccCCCCC--CCccccCCCCccc
Q 003525 577 ARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKK--TVFIIGATNRPDI--IDPALLRPGRLDQ 652 (813)
Q Consensus 577 a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~--~v~vi~aTn~~~~--ld~allr~gRf~~ 652 (813)
.+...+.+|+|||++.++.-+ .+-..++|+.+..+...- .++.+||-.-... -|+.+-+ ||+
T Consensus 141 lr~~~vrmLIIDE~H~lLaGs-----------~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~- 206 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLLAGS-----------YRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS--RFE- 206 (302)
T ss_pred HHHcCCcEEEeechHHHhccc-----------HHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh--ccC-
Confidence 556677899999999986421 112344444444443322 3444444332222 3677776 997
Q ss_pred ccccCCCC-HHHHHHHHHHHhccCCCCC--cccH----HHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Q 003525 653 LIYIPLPD-EASRLQIFKACLRKSPISP--DVDL----SALARYTHGFSGADITEVCQRACKYAIREN 713 (813)
Q Consensus 653 ~i~~~~p~-~~~r~~Il~~~l~~~~~~~--~~d~----~~la~~~~g~sg~di~~l~~~a~~~a~~~~ 713 (813)
.+.+|... .++-..++..+-+.+|+.. ...- ..|-..++|.. ++|..+++.|+..|++..
T Consensus 207 ~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i-G~l~~ll~~aA~~AI~sG 273 (302)
T PF05621_consen 207 PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI-GELSRLLNAAAIAAIRSG 273 (302)
T ss_pred CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch-HHHHHHHHHHHHHHHhcC
Confidence 55556433 2344556666666666542 2222 34555677755 588899999999999865
No 381
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=3.3e-06 Score=91.86 Aligned_cols=128 Identities=17% Similarity=0.319 Sum_probs=89.2
Q ss_pred CceEEEECCCCCchHHHHHHHHHHhCCe------------------------EEEEechhhhhhhcchhHHHHHHHHHHH
Q 003525 249 PKGILLYGPPGSGKTLIARAVANETGAF------------------------FFLINGPEIMSKLAGESESNLRKAFEEA 304 (813)
Q Consensus 249 ~~~vLL~GppGsGKTtLar~la~~l~~~------------------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a 304 (813)
+..+||+||+|+|||++|+.+|+.+... ++.+....- + ..-.-..+|.+.+.+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~--~~i~id~iR~l~~~~ 98 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-D--KTIKVDQVRELVSFV 98 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-C--CCCCHHHHHHHHHHH
Confidence 5579999999999999999999987431 122211000 0 011234566665554
Q ss_pred Hh----cCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEc
Q 003525 305 EK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDI 380 (813)
Q Consensus 305 ~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i 380 (813)
.. ....|++||++|.+.. ...+.|+..+++.. .++++|.+|+.++.+.+.+++ |. ..+.+
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~~-----------~aaNaLLK~LEEPp--~~~~fiL~t~~~~~ll~TI~S--Rc-~~~~~ 162 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMNR-----------NAANALLKSLEEPS--GDTVLLLISHQPSRLLPTIKS--RC-QQQAC 162 (328)
T ss_pred hhccccCCCeEEEECChhhCCH-----------HHHHHHHHHHhCCC--CCeEEEEEECChhhCcHHHHh--hc-eeeeC
Confidence 32 3456889999998843 34577888888643 467777899999999999998 65 44899
Q ss_pred CCCCHHHHHHHHHHH
Q 003525 381 GVPDEVGRLEILRIH 395 (813)
Q Consensus 381 ~~p~~~~R~~Il~~~ 395 (813)
++|+.++-.+.|...
T Consensus 163 ~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 163 PLPSNEESLQWLQQA 177 (328)
T ss_pred CCcCHHHHHHHHHHh
Confidence 999998888777654
No 382
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=7e-07 Score=96.97 Aligned_cols=131 Identities=21% Similarity=0.272 Sum_probs=90.4
Q ss_pred CCCceeeeecCCCCChhHHHHHHHHHhC-------------------------CeEEEEeccchhhhccc-----ccHHH
Q 003525 520 SPSKGVLFYGPPGCGKTLLAKAIANECQ-------------------------ANFISVKGPELLTMWFG-----ESEAN 569 (813)
Q Consensus 520 ~~~~gilL~GppGtGKT~la~ala~~~~-------------------------~~~i~v~~~~l~~~~vg-----~se~~ 569 (813)
+.+..+||+||+|+|||++|+.+|..+. ..|+.+....-. ..-| -+-..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 4566799999999999999999998853 124444331100 0001 12345
Q ss_pred HHHHHHHHHh----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCCCcccc
Q 003525 570 VREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALL 645 (813)
Q Consensus 570 i~~vF~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~all 645 (813)
||.+.+.+.. ....|+++|+++.+- ....+.||..|+... .++.+|.+|+.++.+.+.+.
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld--------------~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMN--------------LQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCC--------------HHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHH
Confidence 6666665543 445699999999873 345677888888664 34566778888888888888
Q ss_pred CCCCcccccccCCCCHHHHHHHHHH
Q 003525 646 RPGRLDQLIYIPLPDEASRLQIFKA 670 (813)
Q Consensus 646 r~gRf~~~i~~~~p~~~~r~~Il~~ 670 (813)
+ |+. .+.|++|+.++..+.++.
T Consensus 162 S--Rc~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 162 S--RCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred H--Hhh-hhcCCCCCHHHHHHHHHh
Confidence 7 884 889999999887777754
No 383
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.45 E-value=1.3e-06 Score=105.24 Aligned_cols=195 Identities=24% Similarity=0.312 Sum_probs=112.8
Q ss_pred cccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHh---CCeEEEEeccchhh-
Q 003525 485 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT- 560 (813)
Q Consensus 485 ~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~---~~~~i~v~~~~l~~- 560 (813)
..++++.|.....+.+.+.+... ......|+|+|++|||||++|+++...+ +.+|+.+++..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~-----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV-----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 35667778776666665443321 1223469999999999999999998875 46899999876532
Q ss_pred ----hcccc--------cHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccC-----
Q 003525 561 ----MWFGE--------SEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN----- 623 (813)
Q Consensus 561 ----~~vg~--------se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~----- 623 (813)
..+|. ..... ..|+.+. ...||||||+.+. ..+...|+..|+...
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~-g~le~a~---~GtL~Ldei~~L~--------------~~~Q~~L~~~l~~~~~~~~g 503 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRI-GRFELAD---KSSLFLDEVGDMP--------------LELQPKLLRVLQEQEFERLG 503 (686)
T ss_pred HhhhhhcCcccccccccccchh-hHHHhcC---CCeEEEechhhCC--------------HHHHHHHHHHHHhCCEEeCC
Confidence 12232 11122 2344443 3599999999974 335666666665421
Q ss_pred C----CCcEEEEeccCCC--CCCC-----ccccCCCCcc-cccccCCCCH--HHHHHHHHHHhcc----CCCC----Ccc
Q 003525 624 A----KKTVFIIGATNRP--DIID-----PALLRPGRLD-QLIYIPLPDE--ASRLQIFKACLRK----SPIS----PDV 681 (813)
Q Consensus 624 ~----~~~v~vi~aTn~~--~~ld-----~allr~gRf~-~~i~~~~p~~--~~r~~Il~~~l~~----~~~~----~~~ 681 (813)
. ..++-+|++|+.. +.+. +.|.. |+. ..|.+|+... ++.-.+++.++++ ++.. ...
T Consensus 504 ~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~ 581 (686)
T PRK15429 504 SNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY--RLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAE 581 (686)
T ss_pred CCCcccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 1 2357788888764 2222 22332 443 2344444432 2333345554432 2211 112
Q ss_pred cHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 003525 682 DLSALARYTHGFSGADITEVCQRACKYAI 710 (813)
Q Consensus 682 d~~~la~~~~g~sg~di~~l~~~a~~~a~ 710 (813)
-+..|.....--+-++|++++++|+..+-
T Consensus 582 al~~L~~y~WPGNvrEL~~~i~~a~~~~~ 610 (686)
T PRK15429 582 TLRTLSNMEWPGNVRELENVIERAVLLTR 610 (686)
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhCC
Confidence 24555555444567899999999987653
No 384
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.45 E-value=9.1e-07 Score=104.98 Aligned_cols=156 Identities=24% Similarity=0.355 Sum_probs=94.5
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhC------------------
Q 003525 213 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG------------------ 274 (813)
Q Consensus 213 ~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~------------------ 274 (813)
.|.+|.|++..+..+.-....| ...+|||.|++|||||+++++|+..++
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 4778999998876664333221 124699999999999999999999883
Q ss_pred -----------------CeEEEEechhhhhhhcchh--HHHHH---HHHHH--HHhcCCcEEEeccchhccCCCCCCchh
Q 003525 275 -----------------AFFFLINGPEIMSKLAGES--ESNLR---KAFEE--AEKNAPSIIFIDELDSIAPKREKTHGE 330 (813)
Q Consensus 275 -----------------~~~v~v~~~~l~~~~~g~~--~~~l~---~vf~~--a~~~~p~il~iDEid~l~~~~~~~~~~ 330 (813)
.+|+.+.+........|.. ...+. ..++. .......+|||||++.+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~-------- 140 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD-------- 140 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH--------
Confidence 2344443322211122211 11010 00110 0011235999999998853
Q ss_pred HHHHHHHHHHHHhhcc-----------ccCCcEEEEEecCCCC-CCCHHhhccCCcceEEEcCCCC-HHHHHHHHHH
Q 003525 331 VERRIVSQLLTLMDGL-----------KSRAHVIVMGATNRPN-SIDPALRRFGRFDREIDIGVPD-EVGRLEILRI 394 (813)
Q Consensus 331 ~~~~v~~~Ll~~ld~~-----------~~~~~vivi~atn~~~-~ld~~l~r~~Rf~~~i~i~~p~-~~~R~~Il~~ 394 (813)
.+...|+..|+.- ....++.+|+++|..+ .+.++|.. ||...+.++.+. .+++.++++.
T Consensus 141 ---~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 141 ---HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred ---HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 3456677777531 1124588888888643 57778877 888888887764 5667777754
No 385
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.44 E-value=6.4e-07 Score=103.21 Aligned_cols=197 Identities=20% Similarity=0.304 Sum_probs=113.1
Q ss_pred cccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHh---CCeEEEEeccchhhh
Q 003525 485 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM 561 (813)
Q Consensus 485 ~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~---~~~~i~v~~~~l~~~ 561 (813)
..|+++.|.....+.+.+.+.. +. .....|||+|++||||+++|+++-..+ +.+|+.++|..+-..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~----------~A-~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRL----------YA-RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHH----------Hh-CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 4577788887766666554432 11 123469999999999999999998775 468999998765321
Q ss_pred -----cccccHH--------HHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccC-----
Q 003525 562 -----WFGESEA--------NVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN----- 623 (813)
Q Consensus 562 -----~vg~se~--------~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~----- 623 (813)
.+|..+. .-.-+|+.|.. ..||||||+.+.. .+...|+..|+.-.
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~--------------~~Q~~Ll~~L~~~~~~r~g 340 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMPL--------------PLQTRLLRVLEEREVVRVG 340 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhCCH--------------HHHHHHHHHHhcCcEEecC
Confidence 2221110 11234555543 4899999999843 35566666665321
Q ss_pred C----CCcEEEEeccCCC--CCCCccccCC---CCcc-cccccCCCCH--HHHHHHHHHHhccC----CCCCccc-HHH-
Q 003525 624 A----KKTVFIIGATNRP--DIIDPALLRP---GRLD-QLIYIPLPDE--ASRLQIFKACLRKS----PISPDVD-LSA- 685 (813)
Q Consensus 624 ~----~~~v~vi~aTn~~--~~ld~allr~---gRf~-~~i~~~~p~~--~~r~~Il~~~l~~~----~~~~~~d-~~~- 685 (813)
+ .-++-||++||.. +.+....+|+ .|+. ..|++|+... ++...+++.++++. .+.-..+ +..
T Consensus 341 ~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~ 420 (526)
T TIGR02329 341 GTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVL 420 (526)
T ss_pred CCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHh
Confidence 1 1235688888765 2233322221 1453 4555665543 34455555655433 2211111 122
Q ss_pred ------HHHHcCCCCHHHHHHHHHHHHHHH
Q 003525 686 ------LARYTHGFSGADITEVCQRACKYA 709 (813)
Q Consensus 686 ------la~~~~g~sg~di~~l~~~a~~~a 709 (813)
|.....--+-++|++++.+++..+
T Consensus 421 ~~~~~~L~~y~WPGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 421 AGVADPLQRYPWPGNVRELRNLVERLALEL 450 (526)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 444433345689999998887654
No 386
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.44 E-value=8e-07 Score=104.00 Aligned_cols=53 Identities=28% Similarity=0.523 Sum_probs=43.5
Q ss_pred cccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhC
Q 003525 480 VEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 547 (813)
Q Consensus 480 ~~~~~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~ 547 (813)
...|...|+++.|+++++..|...+.. .++++|+||||||||+++++++..+.
T Consensus 23 ~~~~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 23 IEVPERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cccCcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 456778899999999998887655432 23699999999999999999998875
No 387
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=1.2e-06 Score=94.45 Aligned_cols=129 Identities=14% Similarity=0.208 Sum_probs=91.8
Q ss_pred CCCceeeeecCCCCChhHHHHHHHHHhCC-----------------------eEEEEeccchhhhcccccHHHHHHHHHH
Q 003525 520 SPSKGVLFYGPPGCGKTLLAKAIANECQA-----------------------NFISVKGPELLTMWFGESEANVREIFDK 576 (813)
Q Consensus 520 ~~~~gilL~GppGtGKT~la~ala~~~~~-----------------------~~i~v~~~~l~~~~vg~se~~i~~vF~~ 576 (813)
+.+..+||+||.|+||+++|+++|..+-. .|+.+.... .++.+ +-..||.+-+.
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~vdqiR~l~~~ 99 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSI--TVEQIRQCNRL 99 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcC--CHHHHHHHHHH
Confidence 44567999999999999999999987521 233332211 00111 12345555444
Q ss_pred H----HhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCccc
Q 003525 577 A----RQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQ 652 (813)
Q Consensus 577 a----~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~ 652 (813)
+ ......|++||++|.+- ...-|.||..|+. +..++++|..|+.++.|-|-+++ |..
T Consensus 100 ~~~~~~~~~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RCq- 160 (319)
T PRK06090 100 AQESSQLNGYRLFVIEPADAMN--------------ESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RCQ- 160 (319)
T ss_pred HhhCcccCCceEEEecchhhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cce-
Confidence 3 33445799999999983 3456899999995 45678888888889988888887 886
Q ss_pred ccccCCCCHHHHHHHHHH
Q 003525 653 LIYIPLPDEASRLQIFKA 670 (813)
Q Consensus 653 ~i~~~~p~~~~r~~Il~~ 670 (813)
.+.|++|+.++..+.+..
T Consensus 161 ~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 161 QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred eEeCCCCCHHHHHHHHHH
Confidence 889999999888887764
No 388
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=4e-06 Score=90.75 Aligned_cols=178 Identities=13% Similarity=0.189 Sum_probs=114.2
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe----------------
Q 003525 213 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------------- 276 (813)
Q Consensus 213 ~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~---------------- 276 (813)
.|++|.|++..++.+++.+... .-+..+||+||+|+||+++|+++|..+-..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 4788999999999999888641 225689999999999999999999886321
Q ss_pred --EEEEechhhh-hh--------hcc--------hhHHHHHHHHHHHH----hcCCcEEEeccchhccCCCCCCchhHHH
Q 003525 277 --FFLINGPEIM-SK--------LAG--------ESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVER 333 (813)
Q Consensus 277 --~v~v~~~~l~-~~--------~~g--------~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~ 333 (813)
++.+...... +. ..| -.-..++.+.+.+. .....|++||++|.+..
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~----------- 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE----------- 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH-----------
Confidence 1222110000 00 000 01124555544433 23456999999987742
Q ss_pred HHHHHHHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhHHHHhh
Q 003525 334 RIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKD 413 (813)
Q Consensus 334 ~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la~~ 413 (813)
...+.|+..+++.. + .++|..++.++.+-+.+++ |. ..+.++.++.++-.++|......-.. +.+...++..
T Consensus 139 ~aaNaLLK~LEEPp-~--~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~~~ 210 (314)
T PRK07399 139 AAANALLKTLEEPG-N--GTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELLAL 210 (314)
T ss_pred HHHHHHHHHHhCCC-C--CeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHHHH
Confidence 34577888888764 3 3455677788999999998 64 66899999999988888754321111 1123556666
Q ss_pred cCCCchHH
Q 003525 414 THGYVGSD 421 (813)
Q Consensus 414 t~g~~~~d 421 (813)
..|-.+.-
T Consensus 211 a~Gs~~~a 218 (314)
T PRK07399 211 AQGSPGAA 218 (314)
T ss_pred cCCCHHHH
Confidence 66554443
No 389
>PRK08181 transposase; Validated
Probab=98.43 E-value=4.4e-07 Score=95.60 Aligned_cols=71 Identities=24% Similarity=0.363 Sum_probs=50.7
Q ss_pred CceeeeecCCCCChhHHHHHHHHHh---CCeEEEEeccchhhhccc-ccHHHHHHHHHHHHhCCCeEEEEecchhhh
Q 003525 522 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG-ESEANVREIFDKARQSAPCVLFFDELDSIA 594 (813)
Q Consensus 522 ~~gilL~GppGtGKT~la~ala~~~---~~~~i~v~~~~l~~~~vg-~se~~i~~vF~~a~~~~p~il~iDEid~l~ 594 (813)
..+++|+||||||||+|+.+++.++ +...+.++.++++..+.. .......++++... .+.+|+|||++.+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEecccccc
Confidence 4579999999999999999999765 556777888888765421 11123344555543 34699999998753
No 390
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.43 E-value=4.9e-07 Score=93.03 Aligned_cols=113 Identities=20% Similarity=0.303 Sum_probs=74.2
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeE--EEEech-----------------------------hhh--h--
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--FLINGP-----------------------------EIM--S-- 287 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~--v~v~~~-----------------------------~l~--~-- 287 (813)
++.+.++.-+.|+||+|+|||||+|++.+.+.+.. +.+.+. +++ +
T Consensus 24 ~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~ 103 (254)
T COG1121 24 SLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRY 103 (254)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCc
Confidence 34567888999999999999999999999664321 222111 000 0
Q ss_pred -------------------------------hhcch--hHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHH
Q 003525 288 -------------------------------KLAGE--SESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERR 334 (813)
Q Consensus 288 -------------------------------~~~g~--~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~ 334 (813)
...++ ..+.-|..++.|..+.|.++++|| +...++..
T Consensus 104 ~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDE----------P~~gvD~~ 173 (254)
T COG1121 104 GKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDE----------PFTGVDVA 173 (254)
T ss_pred ccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecC----------CcccCCHH
Confidence 00011 234457778888899999999999 33334444
Q ss_pred HHHHHHHHhhccccCCcEEEEEecCCCCCCCH
Q 003525 335 IVSQLLTLMDGLKSRAHVIVMGATNRPNSIDP 366 (813)
Q Consensus 335 v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~ 366 (813)
....+..++..++.. ...|+..+++.+.+..
T Consensus 174 ~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~ 204 (254)
T COG1121 174 GQKEIYDLLKELRQE-GKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHh
Confidence 556677777777777 5666678887665433
No 391
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.43 E-value=3.4e-07 Score=98.89 Aligned_cols=110 Identities=21% Similarity=0.344 Sum_probs=74.9
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe--EEEEechhhhh---------------------------------
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS--------------------------------- 287 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~--~v~v~~~~l~~--------------------------------- 287 (813)
++.+.+++.+.|.|||||||||++|+||+...+. .+.++|.++.+
T Consensus 25 sl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~ 104 (352)
T COG3842 25 SLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKV 104 (352)
T ss_pred eeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhh
Confidence 4567788889999999999999999999875332 24444432210
Q ss_pred ---------------------------hhcc--hhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHH
Q 003525 288 ---------------------------KLAG--ESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (813)
Q Consensus 288 ---------------------------~~~g--~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (813)
.+.. ...++-|..+..+....|.+|++|| +.+..+..+..+
T Consensus 105 ~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDE----------PlSaLD~kLR~~ 174 (352)
T COG3842 105 RKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDE----------PLSALDAKLREQ 174 (352)
T ss_pred cCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcC----------cccchhHHHHHH
Confidence 0000 0233456677778888999999999 445555666667
Q ss_pred HHHHhhccccCCcEEEEEecCCCC
Q 003525 339 LLTLMDGLKSRAHVIVMGATNRPN 362 (813)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~ 362 (813)
+...+..+.....+.+|-.|++.+
T Consensus 175 mr~Elk~lq~~~giT~i~VTHDqe 198 (352)
T COG3842 175 MRKELKELQRELGITFVYVTHDQE 198 (352)
T ss_pred HHHHHHHHHHhcCCeEEEEECCHH
Confidence 766666666666777777788754
No 392
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.43 E-value=6e-07 Score=92.99 Aligned_cols=110 Identities=22% Similarity=0.377 Sum_probs=75.8
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe--EEEEech---hhh-------------------------------
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGP---EIM------------------------------- 286 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~--~v~v~~~---~l~------------------------------- 286 (813)
++.+..++-+.|.||||||||||+|+||+...+. .+.+++. +..
T Consensus 22 ~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFG 101 (345)
T COG1118 22 SLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFG 101 (345)
T ss_pred eeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhc
Confidence 4567789999999999999999999999976432 2444443 110
Q ss_pred ------------------------------hhhcc--hhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHH
Q 003525 287 ------------------------------SKLAG--ESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERR 334 (813)
Q Consensus 287 ------------------------------~~~~g--~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~ 334 (813)
..|+. ...++-|..+..|..-.|.+|++|| +.+..+..
T Consensus 102 l~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDE----------Pf~ALDa~ 171 (345)
T COG1118 102 LKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDE----------PFGALDAK 171 (345)
T ss_pred ccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecC----------CchhhhHH
Confidence 00110 1234446667777778899999999 55566666
Q ss_pred HHHHHHHHhhccccCCcEEEEEecCCCC
Q 003525 335 IVSQLLTLMDGLKSRAHVIVMGATNRPN 362 (813)
Q Consensus 335 v~~~Ll~~ld~~~~~~~vivi~atn~~~ 362 (813)
+...|..+|..+..+..+..+..|++.+
T Consensus 172 vr~~lr~wLr~~~~~~~~ttvfVTHD~e 199 (345)
T COG1118 172 VRKELRRWLRKLHDRLGVTTVFVTHDQE 199 (345)
T ss_pred HHHHHHHHHHHHHHhhCceEEEEeCCHH
Confidence 6677777777666776777787888764
No 393
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.42 E-value=6.2e-07 Score=99.76 Aligned_cols=196 Identities=28% Similarity=0.393 Sum_probs=116.7
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHh---CCeEEEEeccchh-
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL- 559 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~---~~~~i~v~~~~l~- 559 (813)
..+|++|.|-.....++.+.+.. .......|||.|.+||||..+|++|-+.+ +.||+.++|.-+-
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 46788888877666555544332 22344569999999999999999999887 4689999986542
Q ss_pred --------h----hcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhcc-----
Q 003525 560 --------T----MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGM----- 622 (813)
Q Consensus 560 --------~----~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~----- 622 (813)
+ -|.|....--.-+|+.|... -||+|||..+. ..+...||.-|..-
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgemp--------------l~LQaKLLRVLQEkei~rv 372 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMP--------------LPLQAKLLRVLQEKEIERV 372 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCC--------------HHHHHHHHHHHhhceEEec
Confidence 1 12232222223467777665 89999998763 34667777766532
Q ss_pred CC----CCcEEEEeccCCC--CCCCccccCCC---CcccccccCCCCHHHH----HHHHHHHh----ccCC-----CCCc
Q 003525 623 NA----KKTVFIIGATNRP--DIIDPALLRPG---RLDQLIYIPLPDEASR----LQIFKACL----RKSP-----ISPD 680 (813)
Q Consensus 623 ~~----~~~v~vi~aTn~~--~~ld~allr~g---Rf~~~i~~~~p~~~~r----~~Il~~~l----~~~~-----~~~~ 680 (813)
.+ .-+|-||+|||+. +.+...-.|.. |+. ++.+..|...+| ..+...++ ++++ ++++
T Consensus 373 G~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~ 451 (560)
T COG3829 373 GGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLN-VIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPD 451 (560)
T ss_pred CCCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeec-eeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHH
Confidence 11 2368899999984 22222222111 443 444444444333 22333333 3332 2222
Q ss_pred ccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 003525 681 VDLSALARYTHGFSGADITEVCQRACKYA 709 (813)
Q Consensus 681 ~d~~~la~~~~g~sg~di~~l~~~a~~~a 709 (813)
-+..|.+...=-+-++|++++.++...+
T Consensus 452 -a~~~L~~y~WPGNVRELeNviER~v~~~ 479 (560)
T COG3829 452 -ALALLLRYDWPGNVRELENVIERAVNLV 479 (560)
T ss_pred -HHHHHHhCCCCchHHHHHHHHHHHHhcc
Confidence 2444444443336689999999988643
No 394
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=5.1e-08 Score=106.86 Aligned_cols=48 Identities=31% Similarity=0.587 Sum_probs=39.6
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHh
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC 546 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~ 546 (813)
...+.||.|++..|+.|..... ..+++|++||||||||+||+-+.+.+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccC
Confidence 4578899999999998865433 24579999999999999999888765
No 395
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.40 E-value=2.1e-05 Score=91.61 Aligned_cols=78 Identities=23% Similarity=0.236 Sum_probs=49.0
Q ss_pred cCCCCceeeeecCCCCChhHHHHHHHHHh---CCeEEEEeccchhh--------------hc--------cc------cc
Q 003525 518 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT--------------MW--------FG------ES 566 (813)
Q Consensus 518 ~~~~~~gilL~GppGtGKT~la~ala~~~---~~~~i~v~~~~l~~--------------~~--------vg------~s 566 (813)
|+.....++++|+||+|||+++..++... +.+.+++...+-.. .+ .. ..
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 56666669999999999999999887653 44555554322110 00 00 01
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecchhhhh
Q 003525 567 EANVREIFDKARQSAPCVLFFDELDSIAT 595 (813)
Q Consensus 567 e~~i~~vF~~a~~~~p~il~iDEid~l~~ 595 (813)
+..+..+-+......+.+++||-+..+..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 22334444455566788999999988864
No 396
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.40 E-value=1.1e-06 Score=89.05 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=28.4
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~ 274 (813)
++.+.+++.+.|.||+|||||||++.|++...
T Consensus 25 ~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 25 NLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 45678899999999999999999999998654
No 397
>PRK09183 transposase/IS protein; Provisional
Probab=98.39 E-value=6.4e-07 Score=94.44 Aligned_cols=101 Identities=22% Similarity=0.337 Sum_probs=63.6
Q ss_pred CceeeeecCCCCChhHHHHHHHHHh---CCeEEEEeccchhhhcccc-cHHHHHHHHHHHHhCCCeEEEEecchhhhhcc
Q 003525 522 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDSIATQR 597 (813)
Q Consensus 522 ~~gilL~GppGtGKT~la~ala~~~---~~~~i~v~~~~l~~~~vg~-se~~i~~vF~~a~~~~p~il~iDEid~l~~~r 597 (813)
..+++|+||||||||+|+.+++... +.....++.+++...+... ....+..+|+... ..+.+++|||++.....
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~-~~~dlLiiDdlg~~~~~- 179 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGV-MAPRLLIIDEIGYLPFS- 179 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHh-cCCCEEEEcccccCCCC-
Confidence 4569999999999999999998764 5566677777776543221 1223556676643 45679999999775321
Q ss_pred CCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCC
Q 003525 598 GSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP 637 (813)
Q Consensus 598 ~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~ 637 (813)
....+.|++.++.....+. +|.|||.+
T Consensus 180 -----------~~~~~~lf~li~~r~~~~s--~iiTsn~~ 206 (259)
T PRK09183 180 -----------QEEANLFFQVIAKRYEKGS--MILTSNLP 206 (259)
T ss_pred -----------hHHHHHHHHHHHHHHhcCc--EEEecCCC
Confidence 1222344444444322222 56688865
No 398
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=3.4e-06 Score=92.23 Aligned_cols=147 Identities=14% Similarity=0.208 Sum_probs=98.2
Q ss_pred cccccC-hHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe----------------
Q 003525 214 YDDVGG-VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------------- 276 (813)
Q Consensus 214 ~~~i~G-~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~---------------- 276 (813)
|+.|.| ++..++.++..+.. -.-+..+||+||+|+||+++|+.+++.+-..
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 455655 88888888887753 1235568999999999999999999886321
Q ss_pred --------EEEEechhhhhhhcchhHHHHHHHHHHHH----hcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhh
Q 003525 277 --------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMD 344 (813)
Q Consensus 277 --------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 344 (813)
+..+... +. .-.-..++.+.+... ....-|++|||+|.+.. ...+.|+..++
T Consensus 72 ~~~~~hpD~~~i~~~---~~--~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~-----------~a~NaLLK~LE 135 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQ--SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA-----------SAANSLLKFLE 135 (329)
T ss_pred HhcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH-----------HHHHHHHHHhc
Confidence 1111100 00 011234555554433 22346999999987742 34567888888
Q ss_pred ccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHH
Q 003525 345 GLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILR 393 (813)
Q Consensus 345 ~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~ 393 (813)
+... .+++|.+|+.++.+.+.+++ |. ..+++..|+.++-.++|+
T Consensus 136 EPp~--~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 136 EPSG--GTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred CCCC--CceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHH
Confidence 6433 55666678888899999988 54 568999999888777765
No 399
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.39 E-value=8.5e-07 Score=86.88 Aligned_cols=111 Identities=17% Similarity=0.220 Sum_probs=69.4
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe--EEEEechhhhh--------hhc-----chhHHHHHHHHHHHHhc
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS--------KLA-----GESESNLRKAFEEAEKN 307 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~--~v~v~~~~l~~--------~~~-----g~~~~~l~~vf~~a~~~ 307 (813)
++.+.+++.+.|.||+|+|||||+++|++..... -+.+++.++.. ... -...+.-+..+..+...
T Consensus 20 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 20 SLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALAR 99 (163)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhc
Confidence 4567889999999999999999999999987532 24555433211 101 11244556678888888
Q ss_pred CCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCC
Q 003525 308 APSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI 364 (813)
Q Consensus 308 ~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~l 364 (813)
.|.++++||-..-+ +......+...+..+..+ ...++.+|++.+.+
T Consensus 100 ~p~illlDEP~~~L----------D~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~ 145 (163)
T cd03216 100 NARLLILDEPTAAL----------TPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEV 145 (163)
T ss_pred CCCEEEEECCCcCC----------CHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHH
Confidence 99999999944332 222334444444444333 33445567765433
No 400
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.39 E-value=6.8e-07 Score=96.03 Aligned_cols=109 Identities=18% Similarity=0.325 Sum_probs=70.9
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe--EEEEechhhhh---------------------------------
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS--------------------------------- 287 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~--~v~v~~~~l~~--------------------------------- 287 (813)
++.+..++.+.|.||+||||||++|+||+..... -+.+++.++..
T Consensus 23 ~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~ 102 (338)
T COG3839 23 NLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKL 102 (338)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhh
Confidence 4567789999999999999999999999976432 24444322210
Q ss_pred --------------------------hhcc--hhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHH
Q 003525 288 --------------------------KLAG--ESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQL 339 (813)
Q Consensus 288 --------------------------~~~g--~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 339 (813)
.... ...++-|..+..|.-..|.++++|| +.+.++.++...+
T Consensus 103 ~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DE----------PlSnLDa~lR~~m 172 (338)
T COG3839 103 RGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDE----------PLSNLDAKLRVLM 172 (338)
T ss_pred CCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecC----------chhHhhHHHHHHH
Confidence 0000 0223335556666667899999999 5555566666666
Q ss_pred HHHhhccccCCcEEEEEecCCC
Q 003525 340 LTLMDGLKSRAHVIVMGATNRP 361 (813)
Q Consensus 340 l~~ld~~~~~~~vivi~atn~~ 361 (813)
...+..+..+..+.+|-.|++.
T Consensus 173 r~ei~~lh~~l~~T~IYVTHDq 194 (338)
T COG3839 173 RSEIKKLHERLGTTTIYVTHDQ 194 (338)
T ss_pred HHHHHHHHHhcCCcEEEEcCCH
Confidence 6666666666566666677764
No 401
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.38 E-value=1.6e-06 Score=85.18 Aligned_cols=110 Identities=29% Similarity=0.491 Sum_probs=70.7
Q ss_pred CceeeeecCCCCChhHHHHHHHHHhC---CeEEEEeccchhhh-----cccccH-------HHHHHHHHHHHhCCCeEEE
Q 003525 522 SKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTM-----WFGESE-------ANVREIFDKARQSAPCVLF 586 (813)
Q Consensus 522 ~~gilL~GppGtGKT~la~ala~~~~---~~~i~v~~~~l~~~-----~vg~se-------~~i~~vF~~a~~~~p~il~ 586 (813)
+..|||+|++||||+++|++|-..+. .+|+.|+++.+... .+|... ..-.-+|+.|... .||
T Consensus 22 ~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~ 98 (168)
T PF00158_consen 22 DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGG---TLF 98 (168)
T ss_dssp TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTS---EEE
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccce---EEe
Confidence 35699999999999999999998763 68999999876322 233211 1122567777654 999
Q ss_pred EecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccC-----C----CCcEEEEeccCCCCCCCccccCCCCcc
Q 003525 587 FDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----A----KKTVFIIGATNRPDIIDPALLRPGRLD 651 (813)
Q Consensus 587 iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----~----~~~v~vi~aTn~~~~ld~allr~gRf~ 651 (813)
||||+.+. ..++..|++.|+.-. . .-++-||+|||.+ |...+. .|+|.
T Consensus 99 Ld~I~~L~--------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~--l~~~v~-~g~fr 155 (168)
T PF00158_consen 99 LDEIEDLP--------------PELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD--LEELVE-QGRFR 155 (168)
T ss_dssp EETGGGS---------------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS---HHHHHH-TTSS-
T ss_pred ecchhhhH--------------HHHHHHHHHHHhhchhccccccccccccceEEeecCcC--HHHHHH-cCCCh
Confidence 99999984 346777777776421 1 1268899999863 333333 25664
No 402
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.37 E-value=1.5e-06 Score=83.95 Aligned_cols=111 Identities=22% Similarity=0.410 Sum_probs=73.4
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe--EEEEechhhhh---------------------------------
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS--------------------------------- 287 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~--~v~v~~~~l~~--------------------------------- 287 (813)
++.+.+++.+.|+||+|+|||||+|.|.++..+. -+.+++.++..
T Consensus 22 s~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA 101 (223)
T COG2884 22 SFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVA 101 (223)
T ss_pred eEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhh
Confidence 4567889999999999999999999999876432 23343332200
Q ss_pred ---------------------hhcc------------hhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHH
Q 003525 288 ---------------------KLAG------------ESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERR 334 (813)
Q Consensus 288 ---------------------~~~g------------~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~ 334 (813)
.++| ...+.-|..++.|.-+.|.+|+-|| +.+..+..
T Consensus 102 ~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADE----------PTGNLDp~ 171 (223)
T COG2884 102 LPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADE----------PTGNLDPD 171 (223)
T ss_pred hhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecC----------CCCCCChH
Confidence 0000 1234456667777778999999998 55556666
Q ss_pred HHHHHHHHhhccccCCcEEEEEecCCCCCC
Q 003525 335 IVSQLLTLMDGLKSRAHVIVMGATNRPNSI 364 (813)
Q Consensus 335 v~~~Ll~~ld~~~~~~~vivi~atn~~~~l 364 (813)
....++.++.++...+..+ +.+|++.+-+
T Consensus 172 ~s~~im~lfeeinr~GtTV-l~ATHd~~lv 200 (223)
T COG2884 172 LSWEIMRLFEEINRLGTTV-LMATHDLELV 200 (223)
T ss_pred HHHHHHHHHHHHhhcCcEE-EEEeccHHHH
Confidence 6677778887776654444 4466654433
No 403
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.37 E-value=1e-05 Score=83.12 Aligned_cols=82 Identities=23% Similarity=0.230 Sum_probs=55.3
Q ss_pred EEEeccCC------------CCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHcCCCCH
Q 003525 629 FIIGATNR------------PDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVD-LSALARYTHGFSG 695 (813)
Q Consensus 629 ~vi~aTn~------------~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d-~~~la~~~~g~sg 695 (813)
++|++||+ |.-|+-.|+. |+ .+|...+++.++..+||+..+....+.-+.| ++.|......-|-
T Consensus 319 iiimaTNrgit~iRGTn~~SphGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsL 395 (454)
T KOG2680|consen 319 IIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSL 395 (454)
T ss_pred EEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhH
Confidence 67778886 3445666665 65 4778889999999999999997766553333 3444444444555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003525 696 ADITEVCQRACKYAIREN 713 (813)
Q Consensus 696 ~di~~l~~~a~~~a~~~~ 713 (813)
+--.+++..|.+.|.++.
T Consensus 396 RYai~Lit~a~~~~~krk 413 (454)
T KOG2680|consen 396 RYAIHLITAASLVCLKRK 413 (454)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 566667777777777654
No 404
>PRK08116 hypothetical protein; Validated
Probab=98.37 E-value=2.5e-06 Score=90.34 Aligned_cols=100 Identities=20% Similarity=0.389 Sum_probs=60.5
Q ss_pred CceEEEECCCCCchHHHHHHHHHHh---CCeEEEEechhhhhhhcch----hHHHHHHHHHHHHhcCCcEEEeccchhcc
Q 003525 249 PKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGE----SESNLRKAFEEAEKNAPSIIFIDELDSIA 321 (813)
Q Consensus 249 ~~~vLL~GppGsGKTtLar~la~~l---~~~~v~v~~~~l~~~~~g~----~~~~l~~vf~~a~~~~p~il~iDEid~l~ 321 (813)
+.+++|+|++|||||+|+.++++.+ +..++.++.++++...... .......+++.. ....+|+|||+...-
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEecccCCC
Confidence 4579999999999999999999986 6678888888776543211 111122233332 234699999985421
Q ss_pred CCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCC
Q 003525 322 PKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNR 360 (813)
Q Consensus 322 ~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~ 360 (813)
. . ......|..+++........+ |.|||.
T Consensus 192 ~------t---~~~~~~l~~iin~r~~~~~~~-IiTsN~ 220 (268)
T PRK08116 192 D------T---EWAREKVYNIIDSRYRKGLPT-IVTTNL 220 (268)
T ss_pred C------C---HHHHHHHHHHHHHHHHCCCCE-EEECCC
Confidence 1 1 123355666666543333333 345554
No 405
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.37 E-value=1.2e-06 Score=101.78 Aligned_cols=196 Identities=18% Similarity=0.289 Sum_probs=109.0
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHh---CCeEEEEeccchhh
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT 560 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~---~~~~i~v~~~~l~~ 560 (813)
...|+++.|.....+.+.+.+.. +. .....++|+|++||||+++|+++-..+ ..+|+.+++..+-.
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~----------~A-~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARK----------LA-MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred cccccceeECCHHHHHHHHHHHH----------Hh-CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 34566777766544444333221 11 123459999999999999999987665 36899999887633
Q ss_pred h-----cccccH-------HHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccC-----
Q 003525 561 M-----WFGESE-------ANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN----- 623 (813)
Q Consensus 561 ~-----~vg~se-------~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~----- 623 (813)
. .+|... ..-..+|+.|.. ..||||||+.+.. .+...|++.+....
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~---GtL~LdeI~~L~~--------------~~Q~~Ll~~l~~~~~~~~g 331 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQANG---GSVLLDEIGEMSP--------------RMQAKLLRFLNDGTFRRVG 331 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhcCC---CEEEEeChhhCCH--------------HHHHHHHHHHhcCCcccCC
Confidence 1 122110 001123554433 4899999999843 34566666665421
Q ss_pred C----CCcEEEEeccCCC--C-----CCCccccCCCCcc-cccccCCCCH--HHHHHHHHHHhc----cCCCC-Cccc--
Q 003525 624 A----KKTVFIIGATNRP--D-----IIDPALLRPGRLD-QLIYIPLPDE--ASRLQIFKACLR----KSPIS-PDVD-- 682 (813)
Q Consensus 624 ~----~~~v~vi~aTn~~--~-----~ld~allr~gRf~-~~i~~~~p~~--~~r~~Il~~~l~----~~~~~-~~~d-- 682 (813)
. ..++-||+||+.+ + .+.+.|.. |+. ..|.+|+... ++...+++.+++ +.+.. ..+.
T Consensus 332 ~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~ 409 (520)
T PRK10820 332 EDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAAD 409 (520)
T ss_pred CCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 1 1256788888764 2 23444554 654 4455555433 233344444443 33221 1222
Q ss_pred -HHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 003525 683 -LSALARYTHGFSGADITEVCQRACKYA 709 (813)
Q Consensus 683 -~~~la~~~~g~sg~di~~l~~~a~~~a 709 (813)
+..|.....--+-++|++++.+|...+
T Consensus 410 a~~~L~~y~WPGNvreL~nvl~~a~~~~ 437 (520)
T PRK10820 410 LNTVLTRYGWPGNVRQLKNAIYRALTQL 437 (520)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHhC
Confidence 333443333335688898888887654
No 406
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.37 E-value=3.8e-06 Score=96.33 Aligned_cols=172 Identities=17% Similarity=0.233 Sum_probs=99.7
Q ss_pred ceeeeecCCCCChhHHHHHHHHHhCCeEEEEeccchh-------hhcccccHH-----HHHHHHHH-----HHh------
Q 003525 523 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------TMWFGESEA-----NVREIFDK-----ARQ------ 579 (813)
Q Consensus 523 ~gilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~-------~~~vg~se~-----~i~~vF~~-----a~~------ 579 (813)
+-++|+|||||||||+++++|.+++..+.....+... ..|.+.... .-...|+. ++.
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~ 125 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMS 125 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhcccccccccccccccc
Confidence 3488999999999999999999999888776543321 111111110 01112221 111
Q ss_pred -----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEec--c-----CCC--------CC
Q 003525 580 -----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGA--T-----NRP--------DI 639 (813)
Q Consensus 580 -----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~a--T-----n~~--------~~ 639 (813)
..+.||++||+-.++.. ...++-+.|.+.+..-. ...+++|.+ . |.. ..
T Consensus 126 g~~~~~~~kvILVEDlPN~~~~----------~~~~f~~~L~~~l~~~~-~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L 194 (519)
T PF03215_consen 126 GSNSSSNKKVILVEDLPNVFHR----------DTSRFREALRQYLRSSR-CLPLVFIISETESLSGDNSYRSNSFTAERL 194 (519)
T ss_pred CCCcCCCceEEEeeccccccch----------hHHHHHHHHHHHHHcCC-CCCEEEEEecccccCCCCcccccchhhhhc
Confidence 24579999998755431 11333334433443221 116666666 1 111 14
Q ss_pred CCccccCCCCcccccccCCCCHHHHHHHHHHHhccC--------CCCCccc-HHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 003525 640 IDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS--------PISPDVD-LSALARYTHGFSGADITEVCQRACKYAI 710 (813)
Q Consensus 640 ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~--------~~~~~~d-~~~la~~~~g~sg~di~~l~~~a~~~a~ 710 (813)
+.+.++.-.++ .+|.|.+-.....++.|+..+... ......+ ++.|++.+ .+||+.++......+.
T Consensus 195 ~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s----~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 195 FPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAESS----NGDIRSAINNLQFWCL 269 (519)
T ss_pred cCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHhc----CchHHHHHHHHHHHhc
Confidence 56666653344 478898888877777777666433 1122222 56676654 4599999998888887
No 407
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.36 E-value=1.2e-06 Score=86.49 Aligned_cols=108 Identities=19% Similarity=0.361 Sum_probs=71.1
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhCC--eEEEEechhhh----------------------------------
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGA--FFFLINGPEIM---------------------------------- 286 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~--~~v~v~~~~l~---------------------------------- 286 (813)
++.+.+++.+.|+||+|||||||+|+|.+.-.. -.+.++|..+.
T Consensus 22 ~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~la 101 (240)
T COG1126 22 SLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLA 101 (240)
T ss_pred ceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhh
Confidence 345678999999999999999999999865322 23455542110
Q ss_pred -----------------------------hhhcch--hHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHH
Q 003525 287 -----------------------------SKLAGE--SESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRI 335 (813)
Q Consensus 287 -----------------------------~~~~g~--~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v 335 (813)
..|+.. ..+.-|..+..|..-.|.++++||.- +..+...
T Consensus 102 p~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPT----------SALDPEl 171 (240)
T COG1126 102 PVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPT----------SALDPEL 171 (240)
T ss_pred hHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCc----------ccCCHHH
Confidence 011111 34455777888888899999999944 3344556
Q ss_pred HHHHHHHhhccccCCcEEEEEecCCC
Q 003525 336 VSQLLTLMDGLKSRAHVIVMGATNRP 361 (813)
Q Consensus 336 ~~~Ll~~ld~~~~~~~vivi~atn~~ 361 (813)
+...+..|..+...+ ...+..|+..
T Consensus 172 v~EVL~vm~~LA~eG-mTMivVTHEM 196 (240)
T COG1126 172 VGEVLDVMKDLAEEG-MTMIIVTHEM 196 (240)
T ss_pred HHHHHHHHHHHHHcC-CeEEEEechh
Confidence 677777777766655 4444456654
No 408
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.36 E-value=7.5e-07 Score=88.16 Aligned_cols=110 Identities=15% Similarity=0.063 Sum_probs=66.2
Q ss_pred hCCCCCceEEEECCCCCchHHHHHHHHHHhCCe--EEEEechhhh--hhhc-chhHHHHHHHHHHHHhcCCcEEEeccch
Q 003525 244 IGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIM--SKLA-GESESNLRKAFEEAEKNAPSIIFIDELD 318 (813)
Q Consensus 244 l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~--~v~v~~~~l~--~~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid 318 (813)
+.+.+++.+.|.||+|+|||||+++|++.+... .+.+++..+. .... -...++-+..+..+....|.++++||--
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 356789999999999999999999999986432 2444442211 1110 1224455667777888899999999944
Q ss_pred hccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCC
Q 003525 319 SIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNS 363 (813)
Q Consensus 319 ~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ 363 (813)
.-+ +......+...+..+..+....++.+|++.+.
T Consensus 100 s~L----------D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~ 134 (177)
T cd03222 100 AYL----------DIEQRLNAARAIRRLSEEGKKTALVVEHDLAV 134 (177)
T ss_pred ccC----------CHHHHHHHHHHHHHHHHcCCCEEEEEECCHHH
Confidence 322 22233334444443333322344556776543
No 409
>PRK09183 transposase/IS protein; Provisional
Probab=98.35 E-value=1.9e-06 Score=90.90 Aligned_cols=75 Identities=24% Similarity=0.487 Sum_probs=52.1
Q ss_pred CCCCceEEEECCCCCchHHHHHHHHHHh---CCeEEEEechhhhhhhcc-hhHHHHHHHHHHHHhcCCcEEEeccchhcc
Q 003525 246 VKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAG-ESESNLRKAFEEAEKNAPSIIFIDELDSIA 321 (813)
Q Consensus 246 i~~~~~vLL~GppGsGKTtLar~la~~l---~~~~v~v~~~~l~~~~~g-~~~~~l~~vf~~a~~~~p~il~iDEid~l~ 321 (813)
+..+.+++|+||||||||+|+.+|+... +..+..+++.++...... .....+..+++.. ...+.+++|||++...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 4567899999999999999999997664 556677777776543221 1112244555554 3456799999998653
No 410
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.35 E-value=1.4e-06 Score=87.87 Aligned_cols=111 Identities=20% Similarity=0.288 Sum_probs=73.9
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeE--EEEechhhhh---------------------------------
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--FLINGPEIMS--------------------------------- 287 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~--v~v~~~~l~~--------------------------------- 287 (813)
++.+.+|+.+.|+|++|||||||+|+|++...... +.++|..+..
T Consensus 27 S~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~ 106 (252)
T COG1124 27 SLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILS 106 (252)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHh
Confidence 45678899999999999999999999998764322 3444421100
Q ss_pred ------------------------------hhcc--hhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHH
Q 003525 288 ------------------------------KLAG--ESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRI 335 (813)
Q Consensus 288 ------------------------------~~~g--~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v 335 (813)
.+.. ...+.-|-.+..|....|.+|++||.- +..+-.+
T Consensus 107 Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEpt----------SaLD~si 176 (252)
T COG1124 107 EPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPT----------SALDVSV 176 (252)
T ss_pred hhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCch----------hhhcHHH
Confidence 0000 023344666777777789999999943 3344556
Q ss_pred HHHHHHHhhccccCCcEEEEEecCCCCC
Q 003525 336 VSQLLTLMDGLKSRAHVIVMGATNRPNS 363 (813)
Q Consensus 336 ~~~Ll~~ld~~~~~~~vivi~atn~~~~ 363 (813)
..++++++..++...++.++..+++...
T Consensus 177 Qa~IlnlL~~l~~~~~lt~l~IsHdl~~ 204 (252)
T COG1124 177 QAQILNLLLELKKERGLTYLFISHDLAL 204 (252)
T ss_pred HHHHHHHHHHHHHhcCceEEEEeCcHHH
Confidence 6777777777777777777777776543
No 411
>PRK06526 transposase; Provisional
Probab=98.34 E-value=6.1e-07 Score=94.05 Aligned_cols=71 Identities=23% Similarity=0.342 Sum_probs=46.2
Q ss_pred CceeeeecCCCCChhHHHHHHHHHh---CCeEEEEeccchhhhcccc-cHHHHHHHHHHHHhCCCeEEEEecchhhh
Q 003525 522 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDSIA 594 (813)
Q Consensus 522 ~~gilL~GppGtGKT~la~ala~~~---~~~~i~v~~~~l~~~~vg~-se~~i~~vF~~a~~~~p~il~iDEid~l~ 594 (813)
..+++|+||||||||+||.+++.++ +...+.+..++++...... ........+... ..+.+|+|||++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC
Confidence 4579999999999999999999875 4445555666665433111 111222333332 235799999998763
No 412
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.33 E-value=2.7e-06 Score=79.78 Aligned_cols=99 Identities=22% Similarity=0.408 Sum_probs=60.9
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHh--------CCeEEEEechhhhh----------h----hcc--hhHHHHHHHHHH
Q 003525 248 PPKGILLYGPPGSGKTLIARAVANET--------GAFFFLINGPEIMS----------K----LAG--ESESNLRKAFEE 303 (813)
Q Consensus 248 ~~~~vLL~GppGsGKTtLar~la~~l--------~~~~v~v~~~~l~~----------~----~~g--~~~~~l~~vf~~ 303 (813)
.+..++|+||+|+|||++++.++..+ ...++.++++...+ . ... ........+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 35679999999999999999999987 67778888754321 0 001 123333444444
Q ss_pred HHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEec
Q 003525 304 AEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGAT 358 (813)
Q Consensus 304 a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~at 358 (813)
.......+|+|||+|.+. + ....+.|..+++ .....++++|+.
T Consensus 83 l~~~~~~~lviDe~~~l~-~---------~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLF-S---------DEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHH-T---------HHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcC-C---------HHHHHHHHHHHh--CCCCeEEEEECh
Confidence 544544599999999974 1 345666666666 334456666654
No 413
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.33 E-value=1.5e-06 Score=90.22 Aligned_cols=100 Identities=21% Similarity=0.291 Sum_probs=64.8
Q ss_pred ceeeeecCCCCChhHHHHHHHHHh---CCeEEEEeccchhhhcccc---cHHHHHHHHHHHHhCCCeEEEEecchhhhhc
Q 003525 523 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE---SEANVREIFDKARQSAPCVLFFDELDSIATQ 596 (813)
Q Consensus 523 ~gilL~GppGtGKT~la~ala~~~---~~~~i~v~~~~l~~~~vg~---se~~i~~vF~~a~~~~p~il~iDEid~l~~~ 596 (813)
.+++|+|+||||||+|+.++|..+ +..++.++.++++..+.+. .......+++... ..++|+|||++....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~- 176 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE- 176 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC-
Confidence 479999999999999999999987 5677888888887643321 1122334555543 357999999987531
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCC
Q 003525 597 RGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP 637 (813)
Q Consensus 597 r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~ 637 (813)
......++.+++..- . ..+.-+|.|||..
T Consensus 177 --------s~~~~~~l~~Ii~~R---y-~~~~~tiitSNl~ 205 (244)
T PRK07952 177 --------SRYEKVIINQIVDRR---S-SSKRPTGMLTNSN 205 (244)
T ss_pred --------CHHHHHHHHHHHHHH---H-hCCCCEEEeCCCC
Confidence 223444555554431 1 2233567788864
No 414
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.32 E-value=9.9e-06 Score=95.32 Aligned_cols=53 Identities=28% Similarity=0.417 Sum_probs=44.7
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe
Q 003525 209 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF 276 (813)
Q Consensus 209 ~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~ 276 (813)
+++..++++.|.++.++.++.++.. +.+++|+|||||||||+++++++.++..
T Consensus 12 ~~~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 12 VPERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred cchhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 4556788999999999888777653 3589999999999999999999998754
No 415
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.31 E-value=1e-07 Score=98.31 Aligned_cols=97 Identities=22% Similarity=0.274 Sum_probs=69.9
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe--EEEEechhhhh-hhcchhHHHHHHHHHHHHhcCCcEEEeccchh
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS-KLAGESESNLRKAFEEAEKNAPSIIFIDELDS 319 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~--~v~v~~~~l~~-~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~ 319 (813)
++.+.+++.++|+|+||||||||++.+++.+.+. .+.+++..+.. ....+..+.+..+||.+..+.-+-.+.||+.+
T Consensus 24 ~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evaf 103 (235)
T COG1122 24 SLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAF 103 (235)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhh
Confidence 4567889999999999999999999999988654 35666655432 33334455666777777777666677788888
Q ss_pred ccCCCCCCchhHHHHHHHHH
Q 003525 320 IAPKREKTHGEVERRIVSQL 339 (813)
Q Consensus 320 l~~~~~~~~~~~~~~v~~~L 339 (813)
.+.+.+....++.+++...|
T Consensus 104 g~~n~g~~~~e~~~rv~~~l 123 (235)
T COG1122 104 GLENLGLPREEIEERVAEAL 123 (235)
T ss_pred chhhcCCCHHHHHHHHHHHH
Confidence 87777766666666655444
No 416
>PF13173 AAA_14: AAA domain
Probab=98.31 E-value=3.5e-06 Score=78.94 Aligned_cols=70 Identities=30% Similarity=0.397 Sum_probs=47.6
Q ss_pred CceEEEECCCCCchHHHHHHHHHHhC--CeEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCcEEEeccchhc
Q 003525 249 PKGILLYGPPGSGKTLIARAVANETG--AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSI 320 (813)
Q Consensus 249 ~~~vLL~GppGsGKTtLar~la~~l~--~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l 320 (813)
++.++|+||.||||||+++.++..+. ..++.++..+.......... +...+.+.....+.++||||+..+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 35689999999999999999998876 66788887665432111111 222222222235679999999877
No 417
>PF13173 AAA_14: AAA domain
Probab=98.31 E-value=2.7e-06 Score=79.76 Aligned_cols=119 Identities=20% Similarity=0.267 Sum_probs=69.2
Q ss_pred ceeeeecCCCCChhHHHHHHHHHhC--CeEEEEeccchhhhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCC
Q 003525 523 KGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSS 600 (813)
Q Consensus 523 ~gilL~GppGtGKT~la~ala~~~~--~~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~ 600 (813)
+-++|+||.||||||+++.++..+. .++++++..+.......... +.+.|.+.....+.++|||||+.+..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~~----- 75 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLPD----- 75 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhcc-----
Confidence 3489999999999999999998876 67778877665432111111 23333332222567999999998721
Q ss_pred CCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCC-C--ccccCCCCcccccccCCCCHHH
Q 003525 601 TGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII-D--PALLRPGRLDQLIYIPLPDEAS 663 (813)
Q Consensus 601 ~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l-d--~allr~gRf~~~i~~~~p~~~~ 663 (813)
....+..+.. .. .++-||.|+.....+ . ...+ +||.. .+.+.|.+..+
T Consensus 76 -------~~~~lk~l~d---~~---~~~~ii~tgS~~~~l~~~~~~~l-~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 76 -------WEDALKFLVD---NG---PNIKIILTGSSSSLLSKDIAESL-AGRVI-EIELYPLSFRE 126 (128)
T ss_pred -------HHHHHHHHHH---hc---cCceEEEEccchHHHhhcccccC-CCeEE-EEEECCCCHHH
Confidence 2333444433 11 223344444333222 1 1223 37886 67777777654
No 418
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.31 E-value=3.6e-06 Score=91.34 Aligned_cols=161 Identities=24% Similarity=0.372 Sum_probs=105.7
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCeEEEEec--------
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKG-------- 555 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~~i~v~~-------- 555 (813)
++.+..+.|++..|..|.-.... +.-.|+|+.|+.|+||||++|+||..+..--+...+
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~-------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVD-------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhcc-------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 45667788998888876322111 123479999999999999999999998422111111
Q ss_pred c------------------------chhhhcccccHH-H-----HHH-------HHHH---HHhCCCeEEEEecchhhhh
Q 003525 556 P------------------------ELLTMWFGESEA-N-----VRE-------IFDK---ARQSAPCVLFFDELDSIAT 595 (813)
Q Consensus 556 ~------------------------~l~~~~vg~se~-~-----i~~-------vF~~---a~~~~p~il~iDEid~l~~ 595 (813)
+ .++..-.|.++. . +.+ .|+- |+. .-.|++|||+..|.
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~A-nRGIlYvDEvnlL~- 157 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARA-NRGILYVDEVNLLD- 157 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhc-cCCEEEEecccccc-
Confidence 0 011112233333 1 111 1211 221 22599999998873
Q ss_pred ccCCCCCCCCchHHHHHHHHHHHHhcc-----------CCCCcEEEEeccCCCC-CCCccccCCCCcccccccCCC-CHH
Q 003525 596 QRGSSTGDAGGAADRVLNQLLTEMDGM-----------NAKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLP-DEA 662 (813)
Q Consensus 596 ~r~~~~~~~~~~~~~vl~~lL~~ld~~-----------~~~~~v~vi~aTn~~~-~ld~allr~gRf~~~i~~~~p-~~~ 662 (813)
+++++.||+.+... ...-++++|+|+|.-+ .|-|-|+. ||...|.+..| +.+
T Consensus 158 -------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~ 222 (423)
T COG1239 158 -------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLE 222 (423)
T ss_pred -------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHH
Confidence 56888888877652 1245799999999763 58888998 99999988755 679
Q ss_pred HHHHHHHHHhcc
Q 003525 663 SRLQIFKACLRK 674 (813)
Q Consensus 663 ~r~~Il~~~l~~ 674 (813)
+|.+|.+..+..
T Consensus 223 ~rv~Ii~r~~~f 234 (423)
T COG1239 223 ERVEIIRRRLAF 234 (423)
T ss_pred HHHHHHHHHHHh
Confidence 999999987754
No 419
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.31 E-value=3.4e-06 Score=79.83 Aligned_cols=33 Identities=30% Similarity=0.493 Sum_probs=29.4
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhCC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGA 275 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~ 275 (813)
+|.+.+|+.++|+||+|||||||.|++|.....
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~Lisp 55 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLISP 55 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHhccCC
Confidence 556789999999999999999999999987643
No 420
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.31 E-value=1.7e-05 Score=86.57 Aligned_cols=181 Identities=24% Similarity=0.318 Sum_probs=116.2
Q ss_pred CCCCceeeeecCCCCChhHHHHHHHHHh----CC-eEEEEeccchh----------hhc----c-cccHHHHHHHHHHHH
Q 003525 519 MSPSKGVLFYGPPGCGKTLLAKAIANEC----QA-NFISVKGPELL----------TMW----F-GESEANVREIFDKAR 578 (813)
Q Consensus 519 ~~~~~gilL~GppGtGKT~la~ala~~~----~~-~~i~v~~~~l~----------~~~----v-g~se~~i~~vF~~a~ 578 (813)
...+..+.+.|.||+|||.+..-+-... .. ..+++++..+. +.+ + +.+++.....|+.-.
T Consensus 172 ~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~ 251 (529)
T KOG2227|consen 172 LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHT 251 (529)
T ss_pred cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 3445569999999999999888554333 22 34777776532 112 1 122334445555543
Q ss_pred hC--CCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCCCccccC----CCCccc
Q 003525 579 QS--APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLR----PGRLDQ 652 (813)
Q Consensus 579 ~~--~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr----~gRf~~ 652 (813)
.. .+-++++||+|.|+.++ .+++-++ -++..+ ...++++||..|..|+-|..|.| -+--..
T Consensus 252 ~q~k~~~llVlDEmD~L~tr~-----------~~vLy~l-Fewp~l-p~sr~iLiGiANslDlTdR~LprL~~~~~~~P~ 318 (529)
T KOG2227|consen 252 KQSKFMLLLVLDEMDHLITRS-----------QTVLYTL-FEWPKL-PNSRIILIGIANSLDLTDRFLPRLNLDLTIKPK 318 (529)
T ss_pred hcccceEEEEechhhHHhhcc-----------cceeeee-hhcccC-CcceeeeeeehhhhhHHHHHhhhhhhccCCCCc
Confidence 32 35699999999998532 1122222 233333 35678999999998887765543 123347
Q ss_pred ccccCCCCHHHHHHHHHHHhccCCCCCccc--HHHHHHHcCCCCHH--HHHHHHHHHHHHHHHH
Q 003525 653 LIYIPLPDEASRLQIFKACLRKSPISPDVD--LSALARYTHGFSGA--DITEVCQRACKYAIRE 712 (813)
Q Consensus 653 ~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d--~~~la~~~~g~sg~--di~~l~~~a~~~a~~~ 712 (813)
++.|++++.++..+||+..+...+.....+ ++..|+...+.||. ..-.+|+.|...+-.+
T Consensus 319 ~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI~E~e 382 (529)
T KOG2227|consen 319 LLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEIAEIE 382 (529)
T ss_pred eeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999998877654443 67778888888873 3334667776555443
No 421
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.31 E-value=1.2e-06 Score=94.34 Aligned_cols=101 Identities=26% Similarity=0.345 Sum_probs=62.9
Q ss_pred CCceeeeecCCCCChhHHHHHHHHHh---CCeEEEEeccchhhhccccc-HHHHHHHHHHHHhCCCeEEEEecchhhhhc
Q 003525 521 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGES-EANVREIFDKARQSAPCVLFFDELDSIATQ 596 (813)
Q Consensus 521 ~~~gilL~GppGtGKT~la~ala~~~---~~~~i~v~~~~l~~~~vg~s-e~~i~~vF~~a~~~~p~il~iDEid~l~~~ 596 (813)
..+|++|+||+|||||+|+.++|+++ +.....+..++++....... .......++.... ..+|+|||+..-..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~--~dlLiIDDiG~e~~- 231 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKE--APVLMLDDIGAEQM- 231 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcC--CCEEEEecCCCccc-
Confidence 35689999999999999999999997 56667777777765432110 1123344444433 35999999966321
Q ss_pred cCCCCCCCCchHH-HHHHHHHHH-HhccCCCCcEEEEeccCCC
Q 003525 597 RGSSTGDAGGAAD-RVLNQLLTE-MDGMNAKKTVFIIGATNRP 637 (813)
Q Consensus 597 r~~~~~~~~~~~~-~vl~~lL~~-ld~~~~~~~v~vi~aTn~~ 637 (813)
+.+.. .++..+++. |. .+.-.|.|||.+
T Consensus 232 --------s~~~~~~ll~~Il~~R~~-----~~~~ti~TSNl~ 261 (306)
T PRK08939 232 --------SSWVRDEVLGVILQYRMQ-----EELPTFFTSNFD 261 (306)
T ss_pred --------cHHHHHHHHHHHHHHHHH-----CCCeEEEECCCC
Confidence 22222 344444432 21 234577788864
No 422
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.29 E-value=6.7e-06 Score=94.16 Aligned_cols=48 Identities=27% Similarity=0.520 Sum_probs=37.0
Q ss_pred CCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhC
Q 003525 212 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (813)
Q Consensus 212 ~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~ 274 (813)
..|+++.|.+..++.+.- .+..+.+++|+|||||||||+++.+++.+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~---------------aa~~g~~vlliG~pGsGKTtlar~l~~llp 236 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEI---------------AAAGGHNLLLFGPPGSGKTMLASRLQGILP 236 (499)
T ss_pred CCHHHhcCcHHHHhhhhh---------------hccCCCEEEEEecCCCCHHHHHHHHhcccC
Confidence 367888888776554422 234567899999999999999999998764
No 423
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.28 E-value=2.8e-06 Score=94.72 Aligned_cols=196 Identities=23% Similarity=0.330 Sum_probs=116.7
Q ss_pred cccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhC---CeEEEEeccchhhh--
Q 003525 487 WEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTM-- 561 (813)
Q Consensus 487 ~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~---~~~i~v~~~~l~~~-- 561 (813)
+.+++|.....+++.+.+.. + ......||++|++||||-++|++|-..+. .||+.++|..+-..
T Consensus 140 ~~~liG~S~am~~l~~~i~k----------v-A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ 208 (464)
T COG2204 140 GGELVGESPAMQQLRRLIAK----------V-APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLL 208 (464)
T ss_pred cCCceecCHHHHHHHHHHHH----------H-hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHH
Confidence 45566666666666555432 1 12234599999999999999999998875 59999998765321
Q ss_pred ---cccccH----HHH---HHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhcc-----CC--
Q 003525 562 ---WFGESE----ANV---REIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGM-----NA-- 624 (813)
Q Consensus 562 ---~vg~se----~~i---~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~-----~~-- 624 (813)
.+|... ... .-.|+.|... .||+|||..+. ..++..||..|..- .+
T Consensus 209 ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~mp--------------l~~Q~kLLRvLqe~~~~rvG~~~ 271 (464)
T COG2204 209 ESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEMP--------------LELQVKLLRVLQEREFERVGGNK 271 (464)
T ss_pred HHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccCC--------------HHHHHHHHHHHHcCeeEecCCCc
Confidence 223211 111 1256666554 99999998873 34666777766532 12
Q ss_pred --CCcEEEEeccCCC--CC-----CCccccCCCCcccccccCCCCHHHH----HHHHHHHhcc----CCCC-CcccHHHH
Q 003525 625 --KKTVFIIGATNRP--DI-----IDPALLRPGRLDQLIYIPLPDEASR----LQIFKACLRK----SPIS-PDVDLSAL 686 (813)
Q Consensus 625 --~~~v~vi~aTn~~--~~-----ld~allr~gRf~~~i~~~~p~~~~r----~~Il~~~l~~----~~~~-~~~d~~~l 686 (813)
.-+|-||+|||+. +. +-+.|.- |+. ++.+..|...+| --++++++++ .+.. ..+.-+.+
T Consensus 272 ~i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~ 348 (464)
T COG2204 272 PIKVDVRIIAATNRDLEEEVAAGRFREDLYY--RLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEAL 348 (464)
T ss_pred ccceeeEEEeecCcCHHHHHHcCCcHHHHHh--hhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 1258899999974 22 2333333 554 555555555444 3344444433 3221 23333344
Q ss_pred HHHc-CCC--CHHHHHHHHHHHHHHHHHHH
Q 003525 687 ARYT-HGF--SGADITEVCQRACKYAIREN 713 (813)
Q Consensus 687 a~~~-~g~--sg~di~~l~~~a~~~a~~~~ 713 (813)
+... ..+ +-++|+|++.+++..+-...
T Consensus 349 ~~L~~y~WPGNVREL~N~ver~~il~~~~~ 378 (464)
T COG2204 349 AALLAYDWPGNVRELENVVERAVILSEGPE 378 (464)
T ss_pred HHHHhCCCChHHHHHHHHHHHHHhcCCccc
Confidence 3322 223 45899999999988775543
No 424
>PRK08181 transposase; Validated
Probab=98.27 E-value=2.9e-06 Score=89.45 Aligned_cols=73 Identities=25% Similarity=0.466 Sum_probs=50.2
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHh---CCeEEEEechhhhhhhcch-hHHHHHHHHHHHHhcCCcEEEeccchhccC
Q 003525 248 PPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGE-SESNLRKAFEEAEKNAPSIIFIDELDSIAP 322 (813)
Q Consensus 248 ~~~~vLL~GppGsGKTtLar~la~~l---~~~~v~v~~~~l~~~~~g~-~~~~l~~vf~~a~~~~p~il~iDEid~l~~ 322 (813)
.+.+++|+||||||||+|+.+++..+ +..++.++..+++...... ........+... ..+.+|+|||+.....
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~ 181 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTK 181 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccC
Confidence 46789999999999999999999764 5667788877776543211 111222333333 3467999999987643
No 425
>PRK12377 putative replication protein; Provisional
Probab=98.26 E-value=2.5e-06 Score=88.89 Aligned_cols=70 Identities=24% Similarity=0.373 Sum_probs=47.9
Q ss_pred CceeeeecCCCCChhHHHHHHHHHh---CCeEEEEeccchhhhcccc--cHHHHHHHHHHHHhCCCeEEEEecchhh
Q 003525 522 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE--SEANVREIFDKARQSAPCVLFFDELDSI 593 (813)
Q Consensus 522 ~~gilL~GppGtGKT~la~ala~~~---~~~~i~v~~~~l~~~~vg~--se~~i~~vF~~a~~~~p~il~iDEid~l 593 (813)
..+++|+||||||||+||.++|+.+ +..++.+..++++...-.. .......+++... ...+|+|||+...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~--~~dLLiIDDlg~~ 175 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELC--KVDLLVLDEIGIQ 175 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 3579999999999999999999987 4556777777876543210 0011223444443 3469999999764
No 426
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.26 E-value=2.1e-06 Score=86.69 Aligned_cols=132 Identities=18% Similarity=0.315 Sum_probs=94.8
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe--EEEEechhhhhhhcchhHHHHHHHHHHHHhcCCcEEEeccchhc
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSI 320 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~--~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l 320 (813)
+|.+..+..+.|+||+||||||++|.|.+.+.+. .+.+++.++.+...-+...+++.++|.. ...|...+.++|...
T Consensus 21 ~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqi-gLFPh~Tv~eNIa~V 99 (309)
T COG1125 21 NLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQI-GLFPHLTVAENIATV 99 (309)
T ss_pred eEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhc-ccCCCccHHHHHHhh
Confidence 4567889999999999999999999999887654 4888998887666667778888888876 567888888888876
Q ss_pred cCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCCCHH-hhccCCcceEEEcCCCCHHHHHHHHHHHhcCC
Q 003525 321 APKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA-LRRFGRFDREIDIGVPDEVGRLEILRIHTKNM 399 (813)
Q Consensus 321 ~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~-l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~ 399 (813)
..-.+........+ ...|+.+++ ++|. +.. |+..++.= .+.+|.-+.+.+...-
T Consensus 100 P~L~~w~k~~i~~r-~~ELl~lvg-------------------L~p~~~~~--RyP~eLSG---GQQQRVGv~RALAadP 154 (309)
T COG1125 100 PKLLGWDKERIKKR-ADELLDLVG-------------------LDPSEYAD--RYPHELSG---GQQQRVGVARALAADP 154 (309)
T ss_pred hhhcCCCHHHHHHH-HHHHHHHhC-------------------CCHHHHhh--cCchhcCc---chhhHHHHHHHHhcCC
Confidence 65555555555555 344555443 4443 333 66665533 4788998988877654
Q ss_pred c
Q 003525 400 K 400 (813)
Q Consensus 400 ~ 400 (813)
+
T Consensus 155 ~ 155 (309)
T COG1125 155 P 155 (309)
T ss_pred C
Confidence 4
No 427
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.25 E-value=1.1e-05 Score=79.24 Aligned_cols=119 Identities=25% Similarity=0.471 Sum_probs=71.0
Q ss_pred ccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHh---CCeEEEEechhhhhh-----
Q 003525 217 VGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSK----- 288 (813)
Q Consensus 217 i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l---~~~~v~v~~~~l~~~----- 288 (813)
|.|-+..++++++.+.... ..+..|||+|++||||+++|++|-+.. +.+|+.|||..+...
T Consensus 1 liG~s~~m~~~~~~~~~~a-----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA-----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT-----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh-----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 3456666677766665321 234789999999999999999998865 368999999765322
Q ss_pred hcchhH-------HHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccc---------cCCcE
Q 003525 289 LAGESE-------SNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAHV 352 (813)
Q Consensus 289 ~~g~~~-------~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~v 352 (813)
..|... ..-...|+.|.. ..||||||+.|.+. +...|+..++.-. ....+
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDLPPE-----------LQAKLLRVLEEGKFTRLGSDKPVPVDV 135 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS-HH-----------HHHHHHHHHHHSEEECCTSSSEEE--E
T ss_pred hhccccccccccccccCCceeeccc---eEEeecchhhhHHH-----------HHHHHHHHHhhchhccccccccccccc
Confidence 111100 001235555544 49999999988532 3455666665211 12367
Q ss_pred EEEEecCC
Q 003525 353 IVMGATNR 360 (813)
Q Consensus 353 ivi~atn~ 360 (813)
-+|++|+.
T Consensus 136 RiI~st~~ 143 (168)
T PF00158_consen 136 RIIASTSK 143 (168)
T ss_dssp EEEEEESS
T ss_pred eEEeecCc
Confidence 78888875
No 428
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.25 E-value=9.2e-07 Score=87.75 Aligned_cols=101 Identities=26% Similarity=0.393 Sum_probs=59.6
Q ss_pred CCceeeeecCCCCChhHHHHHHHHHh---CCeEEEEeccchhhhcccc-cHHHHHHHHHHHHhCCCeEEEEecchhhhhc
Q 003525 521 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDSIATQ 596 (813)
Q Consensus 521 ~~~gilL~GppGtGKT~la~ala~~~---~~~~i~v~~~~l~~~~vg~-se~~i~~vF~~a~~~~p~il~iDEid~l~~~ 596 (813)
...+++|+||+|+|||+||.+++.++ +.....++.++++...-.. ........++..... .+|+|||+....
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~--dlLilDDlG~~~-- 121 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRV--DLLILDDLGYEP-- 121 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTS--SCEEEETCTSS---
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccc--cEecccccceee--
Confidence 35689999999999999999999875 6677888888887653211 111233445554433 599999985431
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCC
Q 003525 597 RGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP 637 (813)
Q Consensus 597 r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~ 637 (813)
......+.|...++.-... + -.|.|||..
T Consensus 122 ----------~~~~~~~~l~~ii~~R~~~-~-~tIiTSN~~ 150 (178)
T PF01695_consen 122 ----------LSEWEAELLFEIIDERYER-K-PTIITSNLS 150 (178)
T ss_dssp ------------HHHHHCTHHHHHHHHHT---EEEEEESS-
T ss_pred ----------ecccccccchhhhhHhhcc-c-CeEeeCCCc
Confidence 1122334444445443322 2 355588864
No 429
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.25 E-value=1.2e-05 Score=83.01 Aligned_cols=181 Identities=30% Similarity=0.429 Sum_probs=93.5
Q ss_pred cChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe---EEEEec-h--------hh
Q 003525 218 GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---FFLING-P--------EI 285 (813)
Q Consensus 218 ~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~---~v~v~~-~--------~l 285 (813)
.|-+++++.|.+++.. .+...++|+||.|+|||+|++.+...+... .+.+.. . .+
T Consensus 2 ~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 2 FGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp -S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 4667777777766542 245789999999999999999999987321 111111 0 00
Q ss_pred -------------hhhh-------------cchhHHHHHHHHHHHHhc-CCcEEEeccchhcc-CCCCCCchhHHHHHHH
Q 003525 286 -------------MSKL-------------AGESESNLRKAFEEAEKN-APSIIFIDELDSIA-PKREKTHGEVERRIVS 337 (813)
Q Consensus 286 -------------~~~~-------------~g~~~~~l~~vf~~a~~~-~p~il~iDEid~l~-~~~~~~~~~~~~~v~~ 337 (813)
.... .......+..+++..... ...+|+|||++.+. .... ...+..
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~------~~~~~~ 142 (234)
T PF01637_consen 69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE------DKDFLK 142 (234)
T ss_dssp HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT------THHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc------hHHHHH
Confidence 0000 011234456666665543 34799999999997 2111 134556
Q ss_pred HHHHHhhccccCCcEEEEEecCCCC---C-CCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCC-cc-ccchhhHHHH
Q 003525 338 QLLTLMDGLKSRAHVIVMGATNRPN---S-IDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNM-KL-AEDVDLERVA 411 (813)
Q Consensus 338 ~Ll~~ld~~~~~~~vivi~atn~~~---~-ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~-~l-~~~~~l~~la 411 (813)
.|...++......++.+|.+..... . .+..-.-.+|+.. +.+++.+.++..+++....+.. .+ .++.++..+.
T Consensus 143 ~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~ 221 (234)
T PF01637_consen 143 SLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIY 221 (234)
T ss_dssp HHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHH
T ss_pred HHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHH
Confidence 6666666644444444443332211 0 0111112346666 8999999999999998876554 12 2455677777
Q ss_pred hhcCCCc
Q 003525 412 KDTHGYV 418 (813)
Q Consensus 412 ~~t~g~~ 418 (813)
..+.|+.
T Consensus 222 ~~~gG~P 228 (234)
T PF01637_consen 222 SLTGGNP 228 (234)
T ss_dssp HHHTT-H
T ss_pred HHhCCCH
Confidence 7777764
No 430
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.25 E-value=1.8e-06 Score=82.76 Aligned_cols=77 Identities=19% Similarity=0.283 Sum_probs=52.0
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeE--EEEechhhhhhhc-chhHHHHHHHHHHHHhcCCcEEEeccchh
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--FLINGPEIMSKLA-GESESNLRKAFEEAEKNAPSIIFIDELDS 319 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~--v~v~~~~l~~~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid~ 319 (813)
++.+.+++.+.|.||+|+|||||+++|++.+...- +.+++........ -...+.-+..+..+....|.++++||-..
T Consensus 20 ~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 20 SLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 34568899999999999999999999999875322 3333321111000 11234455667777788999999999543
No 431
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.25 E-value=1.7e-06 Score=86.27 Aligned_cols=112 Identities=21% Similarity=0.278 Sum_probs=66.6
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe--EEEEechhhhh---------------------------hhcc--
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS---------------------------KLAG-- 291 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~--~v~v~~~~l~~---------------------------~~~g-- 291 (813)
++.+.+++.++|.||+|+|||||+++|++.+... -+.+++.++.. ....
T Consensus 19 ~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 19 SLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 4457889999999999999999999999986432 24444432210 0000
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCC
Q 003525 292 ESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI 364 (813)
Q Consensus 292 ~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~l 364 (813)
...+.-+..+..+....|.++++||-..-+ +......+...+..+.......+|.++++++.+
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~L----------D~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSHL----------DIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 122334555666777789999999944332 222334444444444333123445567765543
No 432
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.24 E-value=2.4e-06 Score=84.44 Aligned_cols=110 Identities=24% Similarity=0.355 Sum_probs=67.4
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe--EEEEechhhhh-------h---hc---------------chhHH
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS-------K---LA---------------GESES 295 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~--~v~v~~~~l~~-------~---~~---------------g~~~~ 295 (813)
++.+.++..+.|.||+|+|||||+++|++.+... -+.+++..+.. . +. -...+
T Consensus 22 ~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 22 SLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHH
Confidence 3567889999999999999999999999987432 23444432210 0 00 01133
Q ss_pred HHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCC
Q 003525 296 NLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI 364 (813)
Q Consensus 296 ~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~l 364 (813)
+-+..+..+....|.++++||-..-+ +......+...+..+.. . ..++.+|++++.+
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gL----------D~~~~~~l~~~l~~~~~-~-~tii~~sh~~~~~ 158 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSAL----------DPETEALILEALRALAK-G-KTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCC----------CHHHHHHHHHHHHHhcC-C-CEEEEEecCHHHH
Confidence 34555677777899999999944322 22333445555544433 2 4555577776554
No 433
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.22 E-value=1.5e-05 Score=86.65 Aligned_cols=159 Identities=25% Similarity=0.418 Sum_probs=99.7
Q ss_pred CCCcccccChHHHHHHHH-HHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEEech------
Q 003525 211 EVGYDDVGGVRKQMAQIR-ELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGP------ 283 (813)
Q Consensus 211 ~~~~~~i~G~~~~~~~i~-~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v~~~------ 283 (813)
.+.|.-+.|.+..+..|- ..+ ...-.++||-|+.|+||||++|+|+..|+...+.+.|.
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av--------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~ 78 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAV--------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPD 78 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhc--------------ccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCC
Confidence 356777888887665541 111 12235799999999999999999999997654444431
Q ss_pred -------h-------------------hhhhhcchhHHH-H-----HHHHH-HHHhc--------CCcEEEeccchhccC
Q 003525 284 -------E-------------------IMSKLAGESESN-L-----RKAFE-EAEKN--------APSIIFIDELDSIAP 322 (813)
Q Consensus 284 -------~-------------------l~~~~~g~~~~~-l-----~~vf~-~a~~~--------~p~il~iDEid~l~~ 322 (813)
. +...-.+.++.+ + ..++. ..... .-.|+++||+..|.
T Consensus 79 ~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~- 157 (423)
T COG1239 79 DPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD- 157 (423)
T ss_pred ChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc-
Confidence 0 011111223331 1 11111 11111 23599999988763
Q ss_pred CCCCCchhHHHHHHHHHHHHhhc-----------cccCCcEEEEEecCCCC-CCCHHhhccCCcceEEEcCCC-CHHHHH
Q 003525 323 KREKTHGEVERRIVSQLLTLMDG-----------LKSRAHVIVMGATNRPN-SIDPALRRFGRFDREIDIGVP-DEVGRL 389 (813)
Q Consensus 323 ~~~~~~~~~~~~v~~~Ll~~ld~-----------~~~~~~vivi~atn~~~-~ld~~l~r~~Rf~~~i~i~~p-~~~~R~ 389 (813)
..++..|+..+.. +....++++|+|+|+.+ .|-+.|+. ||...+.+..| +.++|.
T Consensus 158 ----------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv 225 (423)
T COG1239 158 ----------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERV 225 (423)
T ss_pred ----------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHH
Confidence 4567777776653 12345789999999764 66777776 89988887766 578888
Q ss_pred HHHHHHh
Q 003525 390 EILRIHT 396 (813)
Q Consensus 390 ~Il~~~~ 396 (813)
+|.+...
T Consensus 226 ~Ii~r~~ 232 (423)
T COG1239 226 EIIRRRL 232 (423)
T ss_pred HHHHHHH
Confidence 8887543
No 434
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.22 E-value=2.5e-06 Score=88.18 Aligned_cols=160 Identities=21% Similarity=0.396 Sum_probs=89.2
Q ss_pred CceeeeecCCCCChhHHHHHHHHHhCCe-E--EEEec-cch----hhhc-------------c-----------------
Q 003525 522 SKGVLFYGPPGCGKTLLAKAIANECQAN-F--ISVKG-PEL----LTMW-------------F----------------- 563 (813)
Q Consensus 522 ~~gilL~GppGtGKT~la~ala~~~~~~-~--i~v~~-~~l----~~~~-------------v----------------- 563 (813)
...++|+||.|+|||+|++.+...+... + +++.. ... .... .
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 4569999999999999999999988432 1 11111 000 0000 0
Q ss_pred cccHHHHHHHHHHHHhCC-CeEEEEecchhhh-hccCCCCCCCCchHHHHHHHHHHHHhccCCCCcE-EEEeccCCC---
Q 003525 564 GESEANVREIFDKARQSA-PCVLFFDELDSIA-TQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTV-FIIGATNRP--- 637 (813)
Q Consensus 564 g~se~~i~~vF~~a~~~~-p~il~iDEid~l~-~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v-~vi~aTn~~--- 637 (813)
......+..+++...... ..||+|||++.+. ..+ .....+..|.+.++......++ +|+++++..
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~ 170 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE---------EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLME 170 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT---------TTHHHHHHHHHHHHH----TTEEEEEEESSHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc---------chHHHHHHHHHHHhhccccCCceEEEECCchHHHH
Confidence 112345666666665543 3899999999997 211 2356777777777775444444 444444321
Q ss_pred C--CCCccccCCCCcccccccCCCCHHHHHHHHHHHhccC-CC-CCcccHHHHHHHcCCC
Q 003525 638 D--IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS-PI-SPDVDLSALARYTHGF 693 (813)
Q Consensus 638 ~--~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~-~~-~~~~d~~~la~~~~g~ 693 (813)
+ .-+..+. +|+.. +++++.+.++..++++..++.. .+ .++.+++.+...+.|.
T Consensus 171 ~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 171 EFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp HTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-
T ss_pred HhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCC
Confidence 1 1123344 48887 9999999999999999987765 11 2456677888877764
No 435
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.22 E-value=2.8e-06 Score=89.14 Aligned_cols=68 Identities=28% Similarity=0.471 Sum_probs=48.5
Q ss_pred CCceeeeecCCCCChhHHHHHHHHHh---CCeEEEEeccchhhhccc-----ccHHHHHHHHHHHHhCCCeEEEEecchh
Q 003525 521 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG-----ESEANVREIFDKARQSAPCVLFFDELDS 592 (813)
Q Consensus 521 ~~~gilL~GppGtGKT~la~ala~~~---~~~~i~v~~~~l~~~~vg-----~se~~i~~vF~~a~~~~p~il~iDEid~ 592 (813)
...+++|+||||+|||+||-|+|+++ +...+.+..++++...-. ..+..+.. .... ..+|+|||+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~---~l~~--~dlLIiDDlG~ 178 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLR---ELKK--VDLLIIDDIGY 178 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHH---Hhhc--CCEEEEecccC
Confidence 56789999999999999999999987 566788888888764321 22222222 1222 35999999977
Q ss_pred h
Q 003525 593 I 593 (813)
Q Consensus 593 l 593 (813)
.
T Consensus 179 ~ 179 (254)
T COG1484 179 E 179 (254)
T ss_pred c
Confidence 4
No 436
>PRK06526 transposase; Provisional
Probab=98.22 E-value=3.1e-06 Score=88.76 Aligned_cols=72 Identities=21% Similarity=0.440 Sum_probs=46.9
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHh---CCeEEEEechhhhhhhcch-hHHHHHHHHHHHHhcCCcEEEeccchhcc
Q 003525 248 PPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGE-SESNLRKAFEEAEKNAPSIIFIDELDSIA 321 (813)
Q Consensus 248 ~~~~vLL~GppGsGKTtLar~la~~l---~~~~v~v~~~~l~~~~~g~-~~~~l~~vf~~a~~~~p~il~iDEid~l~ 321 (813)
.+.+++|+||||||||+|+.+|+..+ +..+..++..+++...... ....+...+... ..+.+|+|||++.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC
Confidence 46789999999999999999998775 4555566666555432111 011122223222 346799999998764
No 437
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.21 E-value=1.5e-05 Score=77.92 Aligned_cols=132 Identities=25% Similarity=0.368 Sum_probs=83.8
Q ss_pred ChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCC-----------------------
Q 003525 219 GVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA----------------------- 275 (813)
Q Consensus 219 G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~----------------------- 275 (813)
|++..++.+.+++.. -.-+..+||+||+|+||+++|+++|..+-.
T Consensus 1 gq~~~~~~L~~~~~~------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 677778888777753 133567999999999999999999987622
Q ss_pred eEEEEechhhhhhhcchhHHHHHHHHHHHHh----cCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCc
Q 003525 276 FFFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH 351 (813)
Q Consensus 276 ~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~ 351 (813)
.++.++..... . .-.-+.++.+...... ...-|++|||+|.+. ....+.|+..|++.. ..
T Consensus 69 d~~~~~~~~~~-~--~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~-----------~~a~NaLLK~LEepp--~~ 132 (162)
T PF13177_consen 69 DFIIIKPDKKK-K--SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT-----------EEAQNALLKTLEEPP--EN 132 (162)
T ss_dssp TEEEEETTTSS-S--SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHHSTT--TT
T ss_pred ceEEEeccccc-c--hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh-----------HHHHHHHHHHhcCCC--CC
Confidence 12333221110 0 1123556666555322 345699999999874 345678888888654 36
Q ss_pred EEEEEecCCCCCCCHHhhccCCcceEEEcC
Q 003525 352 VIVMGATNRPNSIDPALRRFGRFDREIDIG 381 (813)
Q Consensus 352 vivi~atn~~~~ld~~l~r~~Rf~~~i~i~ 381 (813)
+.+|.+|+.++.+-+.+++ |. ..+.+.
T Consensus 133 ~~fiL~t~~~~~il~TI~S--Rc-~~i~~~ 159 (162)
T PF13177_consen 133 TYFILITNNPSKILPTIRS--RC-QVIRFR 159 (162)
T ss_dssp EEEEEEES-GGGS-HHHHT--TS-EEEEE-
T ss_pred EEEEEEECChHHChHHHHh--hc-eEEecC
Confidence 7777888999999999998 54 334443
No 438
>PRK06921 hypothetical protein; Provisional
Probab=98.21 E-value=3.2e-06 Score=89.38 Aligned_cols=69 Identities=25% Similarity=0.256 Sum_probs=45.5
Q ss_pred CCceeeeecCCCCChhHHHHHHHHHh----CCeEEEEeccchhhhcccccHHHHHHHHHHHHhCCCeEEEEecchh
Q 003525 521 PSKGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDS 592 (813)
Q Consensus 521 ~~~gilL~GppGtGKT~la~ala~~~----~~~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~ 592 (813)
...+++|+||||+|||+|+.++|+++ +...+++...+++..... ........++... ...+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~-~~~~~~~~~~~~~--~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKD-DFDLLEAKLNRMK--KVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHH-HHHHHHHHHHHhc--CCCEEEEecccc
Confidence 35679999999999999999999986 445677776666543211 1111222333332 346999999954
No 439
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.21 E-value=8e-06 Score=76.53 Aligned_cols=98 Identities=24% Similarity=0.395 Sum_probs=60.3
Q ss_pred ceeeeecCCCCChhHHHHHHHHHh--------CCeEEEEeccchhh----------h----ccc-cc-HHHHHHHHHHHH
Q 003525 523 KGVLFYGPPGCGKTLLAKAIANEC--------QANFISVKGPELLT----------M----WFG-ES-EANVREIFDKAR 578 (813)
Q Consensus 523 ~gilL~GppGtGKT~la~ala~~~--------~~~~i~v~~~~l~~----------~----~vg-~s-e~~i~~vF~~a~ 578 (813)
+.++++||+|+|||++++.++... +.+++.+..+...+ . ..+ .+ ......+.+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 458999999999999999999987 66777776554331 0 001 12 223344445555
Q ss_pred hCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccC
Q 003525 579 QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATN 635 (813)
Q Consensus 579 ~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn 635 (813)
.....+|+|||+|.+. . ..+++.|...++ ...-.++++++.+
T Consensus 85 ~~~~~~lviDe~~~l~-~------------~~~l~~l~~l~~--~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF-S------------DEFLEFLRSLLN--ESNIKVVLVGTPE 126 (131)
T ss_dssp HCTEEEEEEETTHHHH-T------------HHHHHHHHHHTC--SCBEEEEEEESST
T ss_pred hcCCeEEEEeChHhcC-C------------HHHHHHHHHHHh--CCCCeEEEEEChh
Confidence 5554699999999974 1 456666666555 2333556666553
No 440
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.20 E-value=5.4e-06 Score=82.05 Aligned_cols=109 Identities=22% Similarity=0.318 Sum_probs=66.3
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe--EEEEechhhhh-------h---hc---------------chhHH
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS-------K---LA---------------GESES 295 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~--~v~v~~~~l~~-------~---~~---------------g~~~~ 295 (813)
++.+.+++.+.|.||+|+|||||+++|++.+... .+.+++.++.. . +. -...+
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~ 101 (173)
T cd03246 22 SFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQ 101 (173)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHH
Confidence 3456789999999999999999999999986432 23444422210 0 00 01234
Q ss_pred HHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCC
Q 003525 296 NLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN 362 (813)
Q Consensus 296 ~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~ 362 (813)
.-+..+..+....|.++++||--..+ +......+...+..+... ...++.+|++.+
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~L----------D~~~~~~l~~~l~~~~~~-~~tii~~sh~~~ 157 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHL----------DVEGERALNQAIAALKAA-GATRIVIAHRPE 157 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccc----------CHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence 45666777788899999999944332 223334444444444333 234555666654
No 441
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.19 E-value=6.2e-06 Score=90.74 Aligned_cols=195 Identities=23% Similarity=0.333 Sum_probs=113.2
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHh---CCeEEEEeccchhh
Q 003525 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT 560 (813)
Q Consensus 484 ~~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~---~~~~i~v~~~~l~~ 560 (813)
......|+|......++.+.|..- ......|||.|.+||||-.+|++|-..+ ..||+.++|+.+-.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~V-----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVV-----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHH-----------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 455667788877776666554421 1234469999999999999999999887 46899999976532
Q ss_pred -----hcccccH----HHH---HHHHHHHHhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhc-----cC
Q 003525 561 -----MWFGESE----ANV---REIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDG-----MN 623 (813)
Q Consensus 561 -----~~vg~se----~~i---~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~-----~~ 623 (813)
..+|.-. ..+ +--|+.|.. .-||+|||..+. -.+...||..|.. +.
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdG---GTLFLDEIGelP--------------L~lQaKLLRvLQegEieRvG 350 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADG---GTLFLDEIGELP--------------LALQAKLLRVLQEGEIERVG 350 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCC---CeEechhhccCC--------------HHHHHHHHHHHhhcceeecC
Confidence 1222211 111 123444443 489999997763 2355556655543 32
Q ss_pred CCC----cEEEEeccCCCCCCCccccCCCCccc-------ccccCCCCHHHH--------HHHHHHHhccCCC-CCccc-
Q 003525 624 AKK----TVFIIGATNRPDIIDPALLRPGRLDQ-------LIYIPLPDEASR--------LQIFKACLRKSPI-SPDVD- 682 (813)
Q Consensus 624 ~~~----~v~vi~aTn~~~~ld~allr~gRf~~-------~i~~~~p~~~~r--------~~Il~~~l~~~~~-~~~~d- 682 (813)
+.+ .|-||+|||+- |..++.. |+|-. ++.+..|-..+| ...++.+-++++. ....+
T Consensus 351 ~~r~ikVDVRiIAATNRD--L~~~V~~-G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~ 427 (550)
T COG3604 351 GDRTIKVDVRVIAATNRD--LEEMVRD-GEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSA 427 (550)
T ss_pred CCceeEEEEEEEeccchh--HHHHHHc-CcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCH
Confidence 222 58899999972 3333332 44431 333333433333 2223333344444 22222
Q ss_pred --HHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 003525 683 --LSALARYTHGFSGADITEVCQRACKYA 709 (813)
Q Consensus 683 --~~~la~~~~g~sg~di~~l~~~a~~~a 709 (813)
++.|.....--+-+++++++++|+..|
T Consensus 428 ~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 428 EALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 334444433335689999999999988
No 442
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.19 E-value=3.1e-06 Score=91.92 Aligned_cols=100 Identities=24% Similarity=0.353 Sum_probs=62.0
Q ss_pred ceeeeecCCCCChhHHHHHHHHHh---CCeEEEEeccchhhhcccc---cHHHHHHHHHHHHhCCCeEEEEecchhhhhc
Q 003525 523 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE---SEANVREIFDKARQSAPCVLFFDELDSIATQ 596 (813)
Q Consensus 523 ~gilL~GppGtGKT~la~ala~~~---~~~~i~v~~~~l~~~~vg~---se~~i~~vF~~a~~~~p~il~iDEid~l~~~ 596 (813)
.+++|+||+|+|||+|+.++|.++ +..++.++.++++...... ........++.... ..+|+|||+.....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~--~DLLIIDDlG~e~~- 260 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLIN--CDLLIIDDLGTEKI- 260 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhcc--CCEEEEeccCCCCC-
Confidence 679999999999999999999986 5677888888887644211 11111222444333 36999999977521
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCC
Q 003525 597 RGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP 637 (813)
Q Consensus 597 r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~ 637 (813)
. ....+.|...++.....++ -+|.|||.+
T Consensus 261 --------t---~~~~~~Lf~iin~R~~~~k-~tIiTSNl~ 289 (329)
T PRK06835 261 --------T---EFSKSELFNLINKRLLRQK-KMIISTNLS 289 (329)
T ss_pred --------C---HHHHHHHHHHHHHHHHCCC-CEEEECCCC
Confidence 1 2233455555554332222 356677753
No 443
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.18 E-value=2.1e-06 Score=85.49 Aligned_cols=112 Identities=21% Similarity=0.341 Sum_probs=67.0
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe--EEEEechhhhh--------------------hhc----------
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS--------------------KLA---------- 290 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~--~v~v~~~~l~~--------------------~~~---------- 290 (813)
++.+.++..+.|.||+|+|||||+++|++.+... -+.+++.++.. .+.
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~ 99 (178)
T cd03229 20 SLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL 99 (178)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheee
Confidence 4556789999999999999999999999886532 23333321100 000
Q ss_pred -chhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCC
Q 003525 291 -GESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI 364 (813)
Q Consensus 291 -g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~l 364 (813)
-...++-+..+..+....|.++++||-..- ++......+.+++..+.......++.++++++.+
T Consensus 100 ~lS~G~~qr~~la~al~~~p~llilDEP~~~----------LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 164 (178)
T cd03229 100 GLSGGQQQRVALARALAMDPDVLLLDEPTSA----------LDPITRREVRALLKSLQAQLGITVVLVTHDLDEA 164 (178)
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 011344566677778889999999994433 2233334455555444443123445566665433
No 444
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.18 E-value=4.9e-06 Score=82.79 Aligned_cols=110 Identities=19% Similarity=0.222 Sum_probs=66.8
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe--EEEEechhhhh------h---h----------------c--chh
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS------K---L----------------A--GES 293 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~--~v~v~~~~l~~------~---~----------------~--g~~ 293 (813)
++.+.+++.++|.||+|+|||||+++|++..... .+.+++.++.. . + . -..
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 4567889999999999999999999999986432 24455432210 0 0 0 011
Q ss_pred HHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCC
Q 003525 294 ESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI 364 (813)
Q Consensus 294 ~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~l 364 (813)
.++-+..+..+....|.++++||-..-+ +......+...+..+.. . ..++.+|++++.+
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~L----------D~~~~~~l~~~l~~~~~-~-~tii~~sh~~~~~ 160 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGL----------DPITERQLLSLIFEVLK-D-KTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccC----------CHHHHHHHHHHHHHHcC-C-CEEEEEecCHHHH
Confidence 3445666777778899999999954332 22223344444444432 2 3445566766543
No 445
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.18 E-value=3.3e-06 Score=83.60 Aligned_cols=109 Identities=19% Similarity=0.228 Sum_probs=65.7
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe--EEEEechhhhh-----------------hhcc---------hhH
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS-----------------KLAG---------ESE 294 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~--~v~v~~~~l~~-----------------~~~g---------~~~ 294 (813)
++.+.+++.+.|.||+|+|||||+++|++.+... -+.+++..+.. .+.+ ...
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 20 SLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 4556889999999999999999999999976432 13333321100 0001 123
Q ss_pred HHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCC
Q 003525 295 SNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN 362 (813)
Q Consensus 295 ~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~ 362 (813)
+.-+..+..+....|.++++||-...+ +......+...+..+..+. ..++.+|++++
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~L----------D~~~~~~l~~~l~~~~~~g-~tiii~th~~~ 156 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGL----------DPESRREFWELLRELKKEG-KTILLSSHILE 156 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHHHCC-CEEEEECCCHH
Confidence 344566777888899999999954433 2223344444444443332 34455667654
No 446
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.17 E-value=2.5e-06 Score=83.02 Aligned_cols=78 Identities=29% Similarity=0.370 Sum_probs=53.4
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe--EEEEechhhhh-------hhc-----chhHHHHHHHHHHHHhcC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS-------KLA-----GESESNLRKAFEEAEKNA 308 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~--~v~v~~~~l~~-------~~~-----g~~~~~l~~vf~~a~~~~ 308 (813)
++.+.++..++|.|++|+|||||+++|++.+... .+.+++..+.. ... -...+.-+..+..+....
T Consensus 19 ~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 19 SLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLN 98 (157)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcC
Confidence 4456788999999999999999999999987543 25555533211 001 112344455566777778
Q ss_pred CcEEEeccchhc
Q 003525 309 PSIIFIDELDSI 320 (813)
Q Consensus 309 p~il~iDEid~l 320 (813)
|.++++||...-
T Consensus 99 ~~i~ilDEp~~~ 110 (157)
T cd00267 99 PDLLLLDEPTSG 110 (157)
T ss_pred CCEEEEeCCCcC
Confidence 999999996543
No 447
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.17 E-value=1.5e-05 Score=83.76 Aligned_cols=72 Identities=29% Similarity=0.540 Sum_probs=50.2
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHh---CCeEEEEechhhhhhhcchhHH-HHHHHHHHHHhcCCcEEEeccchhc
Q 003525 248 PPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGESES-NLRKAFEEAEKNAPSIIFIDELDSI 320 (813)
Q Consensus 248 ~~~~vLL~GppGsGKTtLar~la~~l---~~~~v~v~~~~l~~~~~g~~~~-~l~~vf~~a~~~~p~il~iDEid~l 320 (813)
.+.+++|+||||+|||.||-+|+.++ |..+..++.++++......... ....-+... -....+|+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCc
Confidence 68899999999999999999999886 6778888888887653322111 111112221 123469999998765
No 448
>PRK12377 putative replication protein; Provisional
Probab=98.17 E-value=1.2e-05 Score=83.83 Aligned_cols=70 Identities=24% Similarity=0.443 Sum_probs=47.4
Q ss_pred CceEEEECCCCCchHHHHHHHHHHh---CCeEEEEechhhhhhhcchhH--HHHHHHHHHHHhcCCcEEEeccchhc
Q 003525 249 PKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGESE--SNLRKAFEEAEKNAPSIIFIDELDSI 320 (813)
Q Consensus 249 ~~~vLL~GppGsGKTtLar~la~~l---~~~~v~v~~~~l~~~~~g~~~--~~l~~vf~~a~~~~p~il~iDEid~l 320 (813)
..+++|+||||||||+||.+|++.+ +..++.++..+++........ .....+++.. ....+|+|||+...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 4689999999999999999999987 455677777776653321100 0111233332 45679999998654
No 449
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.16 E-value=7.2e-06 Score=95.02 Aligned_cols=132 Identities=19% Similarity=0.257 Sum_probs=80.6
Q ss_pred CceEEEECCCCCchHHHHHHHHHHhCCeEEEE----echhhhhhhcch--hHH-HHH-HHHHHHHhcCCcEEEeccchhc
Q 003525 249 PKGILLYGPPGSGKTLIARAVANETGAFFFLI----NGPEIMSKLAGE--SES-NLR-KAFEEAEKNAPSIIFIDELDSI 320 (813)
Q Consensus 249 ~~~vLL~GppGsGKTtLar~la~~l~~~~v~v----~~~~l~~~~~g~--~~~-~l~-~vf~~a~~~~p~il~iDEid~l 320 (813)
..+|||+|+||+|||++|+++++..+...+.. ++..+......+ ... .++ ..+.. ....+++|||++.+
T Consensus 236 ~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~---A~~Gil~iDEi~~l 312 (509)
T smart00350 236 DINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVL---ADNGVCCIDEFDKM 312 (509)
T ss_pred cceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEe---cCCCEEEEechhhC
Confidence 34799999999999999999999876443221 111121110000 000 000 00111 12359999999987
Q ss_pred cCCCCCCchhHHHHHHHHHHHHhhccc-----------cCCcEEEEEecCCCC-------------CCCHHhhccCCcce
Q 003525 321 APKREKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVMGATNRPN-------------SIDPALRRFGRFDR 376 (813)
Q Consensus 321 ~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~vivi~atn~~~-------------~ld~~l~r~~Rf~~ 376 (813)
.+. ....|+..|+.-. -..+..+|+++|+.+ .+++++.+ ||+.
T Consensus 313 ~~~-----------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdL 379 (509)
T smart00350 313 DDS-----------DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDL 379 (509)
T ss_pred CHH-----------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceee
Confidence 532 3455666664321 124678889999763 57888887 9977
Q ss_pred EE-EcCCCCHHHHHHHHHHHh
Q 003525 377 EI-DIGVPDEVGRLEILRIHT 396 (813)
Q Consensus 377 ~i-~i~~p~~~~R~~Il~~~~ 396 (813)
.+ ....|+.+...+|.+..+
T Consensus 380 i~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 380 LFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred EEEecCCCChHHHHHHHHHHH
Confidence 54 557889888888887543
No 450
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.15 E-value=7.3e-06 Score=82.79 Aligned_cols=32 Identities=31% Similarity=0.468 Sum_probs=28.5
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~ 274 (813)
+|.+.++.++.|+||+|+|||||++.++++..
T Consensus 51 sW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ 82 (257)
T COG1119 51 SWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP 82 (257)
T ss_pred ceeecCCCcEEEECCCCCCHHHHHHHHhcccC
Confidence 34678999999999999999999999998764
No 451
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.14 E-value=4.1e-06 Score=86.34 Aligned_cols=110 Identities=21% Similarity=0.291 Sum_probs=76.3
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeE--EEEechhhhh-------------------------hhcch--h
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--FLINGPEIMS-------------------------KLAGE--S 293 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~--v~v~~~~l~~-------------------------~~~g~--~ 293 (813)
+|.+..++.+.|+|.+||||||++|.|.+...+.. +..++.++.. .|..+ .
T Consensus 33 sf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 33 SFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred eEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 45678899999999999999999999999876442 5555443311 11111 2
Q ss_pred HHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCC
Q 003525 294 ESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN 362 (813)
Q Consensus 294 ~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~ 362 (813)
.++-|-.+..|..-.|.+++.||.-..+ +..+..+.+++|..++...++..+-.+++..
T Consensus 113 GQrQRi~IARALal~P~liV~DEpvSaL----------DvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~ 171 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADEPVSAL----------DVSVQAQILNLLKDLQEELGLTYLFISHDLS 171 (268)
T ss_pred hhhhhHHHHHHHhhCCcEEEecCchhhc----------chhHHHHHHHHHHHHHHHhCCeEEEEEEEHH
Confidence 3445667788888899999999966543 2345577777877777766666666666543
No 452
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.14 E-value=2.9e-06 Score=81.39 Aligned_cols=112 Identities=21% Similarity=0.367 Sum_probs=70.7
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe--EEEEechhhhhh--------------------------------
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMSK-------------------------------- 288 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~--~v~v~~~~l~~~-------------------------------- 288 (813)
++.+..++.+.|.||+|+|||||+..||+-.-+. .+.+++.+....
T Consensus 19 dl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P 98 (231)
T COG3840 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSP 98 (231)
T ss_pred EEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCc
Confidence 5677889999999999999999999999975322 255555333100
Q ss_pred ---------------------------hcch--hHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHH
Q 003525 289 ---------------------------LAGE--SESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQL 339 (813)
Q Consensus 289 ---------------------------~~g~--~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 339 (813)
..++ ..++-|..+..+.-....|+++||- .+..+..+...+
T Consensus 99 ~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEP----------FsALdP~LR~eM 168 (231)
T COG3840 99 GLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEP----------FSALDPALRAEM 168 (231)
T ss_pred ccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCc----------hhhcCHHHHHHH
Confidence 0000 1233344455544444458999993 333334455666
Q ss_pred HHHhhccccCCcEEEEEecCCCCCC
Q 003525 340 LTLMDGLKSRAHVIVMGATNRPNSI 364 (813)
Q Consensus 340 l~~ld~~~~~~~vivi~atn~~~~l 364 (813)
+.++..+.......++..|+.++++
T Consensus 169 l~Lv~~l~~E~~~TllmVTH~~~Da 193 (231)
T COG3840 169 LALVSQLCDERKMTLLMVTHHPEDA 193 (231)
T ss_pred HHHHHHHHHhhCCEEEEEeCCHHHH
Confidence 7777776666666777788877654
No 453
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.14 E-value=1.9e-05 Score=76.57 Aligned_cols=111 Identities=22% Similarity=0.246 Sum_probs=62.7
Q ss_pred eeeecCCCCChhHHHHHHHHHh---CCeEEEEeccchhhh----------------------cccc--cHHHHHHHHHHH
Q 003525 525 VLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM----------------------WFGE--SEANVREIFDKA 577 (813)
Q Consensus 525 ilL~GppGtGKT~la~ala~~~---~~~~i~v~~~~l~~~----------------------~vg~--se~~i~~vF~~a 577 (813)
++|+||||+|||+++..++... +.+.+.+........ +... ........+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999887 345555544332210 0000 111122334556
Q ss_pred HhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCC
Q 003525 578 RQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDI 639 (813)
Q Consensus 578 ~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ 639 (813)
....+.++++||+..+................+.+..++..+. ..++.+|++++.+..
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~~ 139 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQVPSG 139 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCCc
Confidence 6678899999999998754211000112223344444444443 335566666665543
No 454
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=5.2e-05 Score=82.06 Aligned_cols=127 Identities=17% Similarity=0.281 Sum_probs=87.9
Q ss_pred CceEEEECCCCCchHHHHHHHHHHhCCe------------------------EEEEechhhhhhhcchhHHHHHHHHHHH
Q 003525 249 PKGILLYGPPGSGKTLIARAVANETGAF------------------------FFLINGPEIMSKLAGESESNLRKAFEEA 304 (813)
Q Consensus 249 ~~~vLL~GppGsGKTtLar~la~~l~~~------------------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a 304 (813)
+..+||+||+|+||+++|+.+|+.+-.. ++.+...+ ++ .-.-..+|.+.+.+
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~--~I~id~iR~l~~~~ 99 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NK--DIGVDQVREINEKV 99 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CC--CCCHHHHHHHHHHH
Confidence 4579999999999999999999876321 12221100 01 11244566655544
Q ss_pred H----hcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEc
Q 003525 305 E----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDI 380 (813)
Q Consensus 305 ~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i 380 (813)
. ...--|++||++|.+.. ...+.|+..+++- ...+++|.+|+.++.+.|.+++ |. ..+.+
T Consensus 100 ~~~~~~g~~KV~iI~~a~~m~~-----------~AaNaLLKtLEEP--p~~~~fiL~t~~~~~llpTI~S--RC-~~~~~ 163 (325)
T PRK06871 100 SQHAQQGGNKVVYIQGAERLTE-----------AAANALLKTLEEP--RPNTYFLLQADLSAALLPTIYS--RC-QTWLI 163 (325)
T ss_pred hhccccCCceEEEEechhhhCH-----------HHHHHHHHHhcCC--CCCeEEEEEECChHhCchHHHh--hc-eEEeC
Confidence 3 23346999999998742 3457888888864 4467788889999999999988 54 55789
Q ss_pred CCCCHHHHHHHHHHH
Q 003525 381 GVPDEVGRLEILRIH 395 (813)
Q Consensus 381 ~~p~~~~R~~Il~~~ 395 (813)
.+|+.++-.+.|...
T Consensus 164 ~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 164 HPPEEQQALDWLQAQ 178 (325)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999988887777643
No 455
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=1.9e-05 Score=86.06 Aligned_cols=132 Identities=15% Similarity=0.225 Sum_probs=89.6
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHhCCeE-------------------------EEEechhhh---------------
Q 003525 247 KPPKGILLYGPPGSGKTLIARAVANETGAFF-------------------------FLINGPEIM--------------- 286 (813)
Q Consensus 247 ~~~~~vLL~GppGsGKTtLar~la~~l~~~~-------------------------v~v~~~~l~--------------- 286 (813)
.-+..+||+||+|+||+++|+.+|+.+.... ..+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 4467899999999999999999998874321 111110000
Q ss_pred ---hh----h-cchhHHHHHHHHHHHH----hcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEE
Q 003525 287 ---SK----L-AGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIV 354 (813)
Q Consensus 287 ---~~----~-~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viv 354 (813)
++ . ..-.-..++.+.+... ...-.|++||++|.+.. ...+.|+..+++. ..++++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEP--p~~t~f 165 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV-----------AAANALLKTLEEP--PPGTVF 165 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH-----------HHHHHHHHHhcCC--CcCcEE
Confidence 00 0 0012244565555432 22335899999998843 3457888888854 456788
Q ss_pred EEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHH
Q 003525 355 MGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRI 394 (813)
Q Consensus 355 i~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~ 394 (813)
|.+|++++.+.|.+++ |. ..+.+++|+.++..+.|..
T Consensus 166 iL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 166 LLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred EEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHH
Confidence 8899999999999998 66 6789999999888888764
No 456
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.13 E-value=1.3e-05 Score=94.05 Aligned_cols=134 Identities=19% Similarity=0.295 Sum_probs=84.7
Q ss_pred ceEEEECCCCCchHHHHHHHHHHhCC--eEEEEechhhhhhhcchhH--HHHH---HHHHH--HHhcCCcEEEeccchhc
Q 003525 250 KGILLYGPPGSGKTLIARAVANETGA--FFFLINGPEIMSKLAGESE--SNLR---KAFEE--AEKNAPSIIFIDELDSI 320 (813)
Q Consensus 250 ~~vLL~GppGsGKTtLar~la~~l~~--~~v~v~~~~l~~~~~g~~~--~~l~---~vf~~--a~~~~p~il~iDEid~l 320 (813)
.+|||.|+||||||+++++|+..++. +|+.+..........|... ..+. ..|+. .......+||+||++.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 47999999999999999999998764 4777764322222233210 0000 00110 00112258999999988
Q ss_pred cCCCCCCchhHHHHHHHHHHHHhhccc-----------cCCcEEEEEecCCCC---CCCHHhhccCCcceEEEcC-CCCH
Q 003525 321 APKREKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVMGATNRPN---SIDPALRRFGRFDREIDIG-VPDE 385 (813)
Q Consensus 321 ~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~vivi~atn~~~---~ld~~l~r~~Rf~~~i~i~-~p~~ 385 (813)
.+ .+...|+..|+.-. ....+.+|+++|..+ .+.+.+.. ||...+.+. .|..
T Consensus 97 ~~-----------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~~ 163 (589)
T TIGR02031 97 DD-----------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVASQ 163 (589)
T ss_pred CH-----------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCCH
Confidence 53 34567777775321 123578888888765 67888877 888776655 4567
Q ss_pred HHHHHHHHHHh
Q 003525 386 VGRLEILRIHT 396 (813)
Q Consensus 386 ~~R~~Il~~~~ 396 (813)
.+|.+|++...
T Consensus 164 ~er~eil~~~~ 174 (589)
T TIGR02031 164 DLRVEIVRRER 174 (589)
T ss_pred HHHHHHHHHHH
Confidence 77888887654
No 457
>PRK06921 hypothetical protein; Provisional
Probab=98.12 E-value=1.2e-05 Score=84.94 Aligned_cols=69 Identities=30% Similarity=0.396 Sum_probs=45.5
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHh----CCeEEEEechhhhhhhcchhHHHHHHHHHHHHhcCCcEEEeccchh
Q 003525 248 PPKGILLYGPPGSGKTLIARAVANET----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDS 319 (813)
Q Consensus 248 ~~~~vLL~GppGsGKTtLar~la~~l----~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~ 319 (813)
.+.+++|+|++|+|||+|+.+|++++ +..++++...+++....... ......++.. ....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 46789999999999999999999986 45567777666544321111 1112222222 3467999999954
No 458
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.12 E-value=7.6e-06 Score=89.78 Aligned_cols=126 Identities=24% Similarity=0.381 Sum_probs=83.8
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHh----CCeEEEEechhh
Q 003525 210 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----GAFFFLINGPEI 285 (813)
Q Consensus 210 ~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l----~~~~v~v~~~~l 285 (813)
....+.++.|-+...+++++.+.. + ...+.+|||+|++||||+.+|++|.... ..+|+.+||..+
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~---~--------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKA---Y--------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHh---h--------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 445678899999998888887764 1 1346789999999999999999987432 567999999876
Q ss_pred hhhhc-----ch-------hHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhcc-----c-
Q 003525 286 MSKLA-----GE-------SESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGL-----K- 347 (813)
Q Consensus 286 ~~~~~-----g~-------~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~-----~- 347 (813)
..... |. ....-..+|+.|.. ..||+|||+.+.+. ....|+..++.- .
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~LP~~-----------~Q~kLl~~le~g~~~rvG~ 207 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRLPPE-----------GQEKLLRVLEEGEYRRVGG 207 (403)
T ss_pred CcCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhCCHh-----------HHHHHHHHHHcCceEecCC
Confidence 43211 11 01111234444443 48999999998643 335677777641 1
Q ss_pred ---cCCcEEEEEecCC
Q 003525 348 ---SRAHVIVMGATNR 360 (813)
Q Consensus 348 ---~~~~vivi~atn~ 360 (813)
-...|-+|++|+.
T Consensus 208 ~~~~~~dVRli~AT~~ 223 (403)
T COG1221 208 SQPRPVDVRLICATTE 223 (403)
T ss_pred CCCcCCCceeeecccc
Confidence 1235777777763
No 459
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.11 E-value=1.5e-05 Score=90.86 Aligned_cols=126 Identities=23% Similarity=0.365 Sum_probs=74.9
Q ss_pred CCCCCceEEEECCCCCchHHHHHHHHHHhCCeE--EEEechhhhh---h-----------------------hcchhHHH
Q 003525 245 GVKPPKGILLYGPPGSGKTLIARAVANETGAFF--FLINGPEIMS---K-----------------------LAGESESN 296 (813)
Q Consensus 245 ~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~--v~v~~~~l~~---~-----------------------~~g~~~~~ 296 (813)
.+..+.+++|+||||||||||++.|++.+.... ..+.+..+.+ . ..|.....
T Consensus 206 aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~ 285 (506)
T PRK09862 206 TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIP 285 (506)
T ss_pred eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCcee
Confidence 345678899999999999999999998875321 1222222110 0 00110000
Q ss_pred HHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccc-----------cCCcEEEEEecCCCC---
Q 003525 297 LRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVMGATNRPN--- 362 (813)
Q Consensus 297 l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~vivi~atn~~~--- 362 (813)
-...+..+. ..+||+||++.+- ..+.+.|+..|+.-. ...++.+|+++|...
T Consensus 286 ~pG~l~~A~---gGvLfLDEi~e~~-----------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~ 351 (506)
T PRK09862 286 GPGEISLAH---NGVLFLDELPEFE-----------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGH 351 (506)
T ss_pred hhhHhhhcc---CCEEecCCchhCC-----------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCcccee
Confidence 011233333 3599999987653 245566666664321 134678899998753
Q ss_pred ------------------CCCHHhhccCCcceEEEcCCCCHH
Q 003525 363 ------------------SIDPALRRFGRFDREIDIGVPDEV 386 (813)
Q Consensus 363 ------------------~ld~~l~r~~Rf~~~i~i~~p~~~ 386 (813)
.+...+.. ||+..+.++.|+.+
T Consensus 352 ~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 352 YQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred cCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 24445554 89988888888765
No 460
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.10 E-value=3.6e-05 Score=83.71 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=27.1
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHhCCeE
Q 003525 247 KPPKGILLYGPPGSGKTLIARAVANETGAFF 277 (813)
Q Consensus 247 ~~~~~vLL~GppGsGKTtLar~la~~l~~~~ 277 (813)
.+++.+.|.||+|.||||.++.||+++.+.+
T Consensus 98 r~G~V~GilG~NGiGKsTalkILaGel~PNL 128 (591)
T COG1245 98 RPGKVVGILGPNGIGKSTALKILAGELKPNL 128 (591)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHhCccccCC
Confidence 4677899999999999999999999986544
No 461
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.10 E-value=4.5e-06 Score=92.14 Aligned_cols=32 Identities=34% Similarity=0.501 Sum_probs=28.2
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~ 274 (813)
++.+.+++.+.|.||+|||||||+++||+...
T Consensus 24 sl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~ 55 (356)
T PRK11650 24 DLDVADGEFIVLVGPSGCGKSTLLRMVAGLER 55 (356)
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC
Confidence 45567889999999999999999999999764
No 462
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.10 E-value=2.4e-06 Score=84.46 Aligned_cols=46 Identities=30% Similarity=0.530 Sum_probs=34.3
Q ss_pred hhhhhhhcCCCCce--eeeecCCCCChhHHHHHHHHHh--CCeEEEEecc
Q 003525 511 PEKFEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANEC--QANFISVKGP 556 (813)
Q Consensus 511 ~~~~~~~~~~~~~g--ilL~GppGtGKT~la~ala~~~--~~~~i~v~~~ 556 (813)
.+.++.+++...+| +.++||+|||||||.|++...- ....|.+++.
T Consensus 15 ~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~ 64 (240)
T COG1126 15 KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGE 64 (240)
T ss_pred eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCE
Confidence 34556666666666 8999999999999999998764 3345666664
No 463
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.10 E-value=5.3e-06 Score=85.40 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=28.4
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~ 274 (813)
++.+.++..+.|.||+|+|||||+++|++.+.
T Consensus 24 s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 24 SLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred EEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 34567899999999999999999999999864
No 464
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.09 E-value=8.8e-06 Score=82.17 Aligned_cols=108 Identities=23% Similarity=0.308 Sum_probs=63.8
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHh--CCe--EEEEechhhhh---------------hhc-------------
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANET--GAF--FFLINGPEIMS---------------KLA------------- 290 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l--~~~--~v~v~~~~l~~---------------~~~------------- 290 (813)
++.+.+++.++|.||+|+|||||+++|++.+ ... -+.+++.++.. .+.
T Consensus 29 ~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~ 108 (194)
T cd03213 29 SGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAK 108 (194)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHH
Confidence 3456889999999999999999999999987 432 13333221100 000
Q ss_pred ---chhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCC
Q 003525 291 ---GESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRP 361 (813)
Q Consensus 291 ---g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~ 361 (813)
-...+.-+..+..+....|.++++||-..-+ +......+...+..+.... ..+|.+++++
T Consensus 109 ~~~LS~G~~qrv~laral~~~p~illlDEP~~~L----------D~~~~~~l~~~l~~~~~~~-~tiii~sh~~ 171 (194)
T cd03213 109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGL----------DSSSALQVMSLLRRLADTG-RTIICSIHQP 171 (194)
T ss_pred hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCC----------CHHHHHHHHHHHHHHHhCC-CEEEEEecCc
Confidence 0112334455666777789999999954332 2223344455555444333 3444466654
No 465
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.09 E-value=1.4e-05 Score=87.31 Aligned_cols=146 Identities=23% Similarity=0.263 Sum_probs=82.7
Q ss_pred cChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHh---CCeEEEEechhhhhhhc----
Q 003525 218 GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLA---- 290 (813)
Q Consensus 218 ~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l---~~~~v~v~~~~l~~~~~---- 290 (813)
.|....++++++.+..- ......|||+|++||||+++|++|-... +.+|+.+||..+.....
T Consensus 2 iG~S~~m~~~~~~~~~~-----------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRL-----------APLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CcCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 35556666665555431 1335679999999999999999997655 36899999976532111
Q ss_pred -chhHH-------HHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccc---------cCCcEE
Q 003525 291 -GESES-------NLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAHVI 353 (813)
Q Consensus 291 -g~~~~-------~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~vi 353 (813)
|.... .-...|+.+ ....||||||+.+.. .+...|+..++.-. ....+-
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATASL-----------LVQEKLLRVIEYGEFERVGGSQTLQVDVR 136 (329)
T ss_pred hccccccccCcccccCCchhhC---CCCEEEeCChHhCCH-----------HHHHHHHHHHHcCcEEecCCCceeccceE
Confidence 10000 000113322 346899999998853 23345555554321 123466
Q ss_pred EEEecCCC-------CCCCHHhhccCCcceEEEcCCCCHHHHHHH
Q 003525 354 VMGATNRP-------NSIDPALRRFGRFDREIDIGVPDEVGRLEI 391 (813)
Q Consensus 354 vi~atn~~-------~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~I 391 (813)
+|++|+.. ..+.+.|.. |+. .+.+..|...+|.+-
T Consensus 137 iI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eD 178 (329)
T TIGR02974 137 LVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQED 178 (329)
T ss_pred EEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhh
Confidence 77777643 122233332 342 245666766666543
No 466
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.09 E-value=1.7e-05 Score=86.72 Aligned_cols=149 Identities=23% Similarity=0.285 Sum_probs=87.5
Q ss_pred cccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhC---CeEEEEechhhhhh--
Q 003525 214 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---AFFFLINGPEIMSK-- 288 (813)
Q Consensus 214 ~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~---~~~v~v~~~~l~~~-- 288 (813)
++++.|.+..++.+++.+..- ...+..|+|+|++||||+++|++|-.... .+++.++|..+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~-----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 456788888888887776531 13456899999999999999999976653 57999999875321
Q ss_pred ---hcchhH-------HHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccc--c-------C
Q 003525 289 ---LAGESE-------SNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK--S-------R 349 (813)
Q Consensus 289 ---~~g~~~-------~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--~-------~ 349 (813)
..|... ......++.+ ....|||||++.+... +...|+..++.-. . .
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~~~-----------~Q~~L~~~l~~~~~~~~g~~~~~~ 139 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPML-----------VQEKLLRVIEYGELERVGGSQPLQ 139 (326)
T ss_pred HHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCCHH-----------HHHHHHHHHhcCcEEeCCCCceee
Confidence 111100 0001122222 3458999999988532 3345555554311 0 1
Q ss_pred CcEEEEEecCCC-------CCCCHHhhccCCcceEEEcCCCCHHHHHH
Q 003525 350 AHVIVMGATNRP-------NSIDPALRRFGRFDREIDIGVPDEVGRLE 390 (813)
Q Consensus 350 ~~vivi~atn~~-------~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~ 390 (813)
..+-+|++++.. ..+.+.|.. ||. .+.+..|.-.+|.+
T Consensus 140 ~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~e 184 (326)
T PRK11608 140 VNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQS 184 (326)
T ss_pred ccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhh
Confidence 246677766542 233344443 442 23455566666644
No 467
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.08 E-value=7.8e-06 Score=91.20 Aligned_cols=154 Identities=27% Similarity=0.387 Sum_probs=95.7
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHh---CCeEEEEechhhh-
Q 003525 211 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIM- 286 (813)
Q Consensus 211 ~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l---~~~~v~v~~~~l~- 286 (813)
..+|++|.|-.+++.++.+.... .......|||.|.+||||..+|++|-+.. +.+|+.+||..+-
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 45789999999988888777653 22446689999999999999999998775 4689999996542
Q ss_pred --------hhhcchhHHH----HHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhcc--------
Q 003525 287 --------SKLAGESESN----LRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGL-------- 346 (813)
Q Consensus 287 --------~~~~g~~~~~----l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~-------- 346 (813)
+...|..-.. -.-.|+.|.. ..||+|||..+.. .+...|+..+..-
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgempl-----------~LQaKLLRVLQEkei~rvG~t 375 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEMPL-----------PLQAKLLRVLQEKEIERVGGT 375 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccCCH-----------HHHHHHHHHHhhceEEecCCC
Confidence 2111111111 1224444433 3799999987742 2344555555321
Q ss_pred -ccCCcEEEEEecCCCCCCCHHhhccCCcc-------eEEEcCCCCHHHHHHHH
Q 003525 347 -KSRAHVIVMGATNRPNSIDPALRRFGRFD-------REIDIGVPDEVGRLEIL 392 (813)
Q Consensus 347 -~~~~~vivi~atn~~~~ld~~l~r~~Rf~-------~~i~i~~p~~~~R~~Il 392 (813)
.....|-+|+|||+. +..++. -|+|- ..+.+..|...+|.+-+
T Consensus 376 ~~~~vDVRIIAATN~n--L~~~i~-~G~FReDLYYRLNV~~i~iPPLReR~eDI 426 (560)
T COG3829 376 KPIPVDVRIIAATNRN--LEKMIA-EGTFREDLYYRLNVIPITIPPLRERKEDI 426 (560)
T ss_pred CceeeEEEEEeccCcC--HHHHHh-cCcchhhheeeeceeeecCCCcccCcchH
Confidence 113468899999964 222222 23331 23556677777776443
No 468
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.08 E-value=3.3e-05 Score=83.96 Aligned_cols=100 Identities=22% Similarity=0.390 Sum_probs=60.3
Q ss_pred CceEEEECCCCCchHHHHHHHHHHh---CCeEEEEechhhhhhhcch---hHHHHHHHHHHHHhcCCcEEEeccchhccC
Q 003525 249 PKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGE---SESNLRKAFEEAEKNAPSIIFIDELDSIAP 322 (813)
Q Consensus 249 ~~~vLL~GppGsGKTtLar~la~~l---~~~~v~v~~~~l~~~~~g~---~~~~l~~vf~~a~~~~p~il~iDEid~l~~ 322 (813)
..+++|+||+|+|||+|+.++|.++ +..++.++..+++...... ........++.. ....+|+|||+.....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~~ 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEKI 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCCC
Confidence 4789999999999999999999986 5677888887776543211 001111113332 2457999999876532
Q ss_pred CCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCC
Q 003525 323 KREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNR 360 (813)
Q Consensus 323 ~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~ 360 (813)
+ ......|..+++.......-++| +||.
T Consensus 261 t---------~~~~~~Lf~iin~R~~~~k~tIi-TSNl 288 (329)
T PRK06835 261 T---------EFSKSELFNLINKRLLRQKKMII-STNL 288 (329)
T ss_pred C---------HHHHHHHHHHHHHHHHCCCCEEE-ECCC
Confidence 1 12234555665544333233444 5553
No 469
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.08 E-value=8e-06 Score=89.92 Aligned_cols=43 Identities=23% Similarity=0.428 Sum_probs=33.0
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe--EEEEechhh
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEI 285 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~--~v~v~~~~l 285 (813)
++.+.++..+.++||+|||||||+|.|.+...+. .+.+++.++
T Consensus 356 sF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l 400 (580)
T COG4618 356 SFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADL 400 (580)
T ss_pred eeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhh
Confidence 4567889999999999999999999999865322 255555443
No 470
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.07 E-value=8.5e-06 Score=83.34 Aligned_cols=32 Identities=31% Similarity=0.340 Sum_probs=28.4
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~ 274 (813)
++.+.+++.+.|.||+|||||||+++|++.+.
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 20 SFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45678899999999999999999999998763
No 471
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.07 E-value=5.5e-06 Score=91.26 Aligned_cols=32 Identities=34% Similarity=0.515 Sum_probs=28.4
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~ 274 (813)
++.+.+++.+.|.||+|||||||+++|++...
T Consensus 26 sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~ 57 (351)
T PRK11432 26 NLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK 57 (351)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC
Confidence 45677899999999999999999999999764
No 472
>PF05729 NACHT: NACHT domain
Probab=98.07 E-value=3.2e-05 Score=75.40 Aligned_cols=140 Identities=21% Similarity=0.337 Sum_probs=74.1
Q ss_pred eEEEECCCCCchHHHHHHHHHHhC---------CeEEEEechhhhhhh------------cchhHHHHHHHHH-HHHhcC
Q 003525 251 GILLYGPPGSGKTLIARAVANETG---------AFFFLINGPEIMSKL------------AGESESNLRKAFE-EAEKNA 308 (813)
Q Consensus 251 ~vLL~GppGsGKTtLar~la~~l~---------~~~v~v~~~~l~~~~------------~g~~~~~l~~vf~-~a~~~~ 308 (813)
-++|+|++|+|||++++.++..+. ...+.+.+.+..... ...........+. ......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 489999999999999999997752 122344443332110 0111111121222 223345
Q ss_pred CcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhc-cccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHH
Q 003525 309 PSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDG-LKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 387 (813)
Q Consensus 309 p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~-~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~ 387 (813)
..+++||-+|.+...... .........+..++.. ...+.++++ ++. +..... +.+...-...+++...+.++
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~~~~~~~~lii--t~r-~~~~~~-~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQALPPGVKLII--TSR-PRAFPD-LRRRLKQAQILELEPFSEED 154 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhhccCCCCeEEE--EEc-CChHHH-HHHhcCCCcEEEECCCCHHH
Confidence 568899999998764322 1122334445455544 222333333 333 222222 33211112567888888999
Q ss_pred HHHHHHHHhc
Q 003525 388 RLEILRIHTK 397 (813)
Q Consensus 388 R~~Il~~~~~ 397 (813)
..++++.+++
T Consensus 155 ~~~~~~~~f~ 164 (166)
T PF05729_consen 155 IKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHhh
Confidence 8888876654
No 473
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.07 E-value=2.1e-05 Score=77.83 Aligned_cols=109 Identities=15% Similarity=0.217 Sum_probs=62.4
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe-------------EEEEechhhhh----------hhcc--hhHHHH
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-------------FFLINGPEIMS----------KLAG--ESESNL 297 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~-------------~v~v~~~~l~~----------~~~g--~~~~~l 297 (813)
++.+.++..+.|.||||||||||++++....+.. +.++.-.+.+. .... ...++-
T Consensus 15 sl~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~q 94 (176)
T cd03238 15 DVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQ 94 (176)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHH
Confidence 4567889999999999999999999996432211 11111001111 0001 123445
Q ss_pred HHHHHHHHhcC--CcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCC
Q 003525 298 RKAFEEAEKNA--PSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN 362 (813)
Q Consensus 298 ~~vf~~a~~~~--p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~ 362 (813)
+..+..+.... |.++++||-..- ++......+...+..+... ...+|.+|++++
T Consensus 95 rl~laral~~~~~p~llLlDEPt~~----------LD~~~~~~l~~~l~~~~~~-g~tvIivSH~~~ 150 (176)
T cd03238 95 RVKLASELFSEPPGTLFILDEPSTG----------LHQQDINQLLEVIKGLIDL-GNTVILIEHNLD 150 (176)
T ss_pred HHHHHHHHhhCCCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence 66677777778 999999995433 2233344445555444333 334555677654
No 474
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.06 E-value=6.6e-06 Score=98.07 Aligned_cols=133 Identities=21% Similarity=0.154 Sum_probs=77.7
Q ss_pred CCCceeeeecCCCCChhHHHHHHHHHhCC-------eEEEEeccchhh-h--cccccHHHHHHHHHHHHhCCCeEEEEec
Q 003525 520 SPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISVKGPELLT-M--WFGESEANVREIFDKARQSAPCVLFFDE 589 (813)
Q Consensus 520 ~~~~gilL~GppGtGKT~la~ala~~~~~-------~~i~v~~~~l~~-~--~vg~se~~i~~vF~~a~~~~p~il~iDE 589 (813)
+...+|||+|+||||||.+|++++..... ++..+....... . ..|+...... .+..| ...+++|||
T Consensus 490 RgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~G-aLvlA---dgGtL~IDE 565 (915)
T PTZ00111 490 RGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPG-AVVLA---NGGVCCIDE 565 (915)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCC-cEEEc---CCCeEEecc
Confidence 33446999999999999999999987532 222222211110 0 0000000000 11112 224999999
Q ss_pred chhhhhccCCCCCCCCchHHHHHHHHHHHHhccC-----------CCCcEEEEeccCCCC-------------CCCcccc
Q 003525 590 LDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----------AKKTVFIIGATNRPD-------------IIDPALL 645 (813)
Q Consensus 590 id~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----------~~~~v~vi~aTn~~~-------------~ld~all 645 (813)
++.+. ......|+..|+.-. -..++-||||+|..+ .|.++|+
T Consensus 566 idkms--------------~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LL 631 (915)
T PTZ00111 566 LDKCH--------------NESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLF 631 (915)
T ss_pred hhhCC--------------HHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHh
Confidence 99973 234556666665321 124789999999742 2678999
Q ss_pred CCCCccccc-ccCCCCHHHHHHHHHHHh
Q 003525 646 RPGRLDQLI-YIPLPDEASRLQIFKACL 672 (813)
Q Consensus 646 r~gRf~~~i-~~~~p~~~~r~~Il~~~l 672 (813)
+ |||.++ .++.|+.+.=..|-++.+
T Consensus 632 S--RFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 632 T--RFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred h--hhcEEEEecCCCChHHHHHHHHHHH
Confidence 8 999764 456777665555544433
No 475
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.06 E-value=2.3e-05 Score=81.80 Aligned_cols=158 Identities=18% Similarity=0.183 Sum_probs=99.4
Q ss_pred cccccccccchhhhhhhccccCCCCChhhhhhhcCCCCceeeeecCCCCChhHHHHHHHHHhCCe--E----EEEeccch
Q 003525 485 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--F----ISVKGPEL 558 (813)
Q Consensus 485 ~~~~~i~g~~~~k~~L~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~ala~~~~~~--~----i~v~~~~l 558 (813)
-..+++.+.+++...+.+... .....++|+|||||+|||+...+.|..+-.+ + ..++.++-
T Consensus 38 ~~l~dv~~~~ei~st~~~~~~-------------~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~ 104 (360)
T KOG0990|consen 38 PFLGIVIKQEPIWSTENRYSG-------------MPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDD 104 (360)
T ss_pred chhhhHhcCCchhhHHHHhcc-------------CCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCc
Confidence 345566666666555554422 2222379999999999999999999887543 1 11122111
Q ss_pred hhhcccccHHHHHHHHHHHHh-------CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEE
Q 003525 559 LTMWFGESEANVREIFDKARQ-------SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFII 631 (813)
Q Consensus 559 ~~~~vg~se~~i~~vF~~a~~-------~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi 631 (813)
.+. ..-+.-...|..+++ ..+..+++||+|.+. ....|+|-+.+..+.. ++-++
T Consensus 105 rgi---d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT--------------~~AQnALRRviek~t~--n~rF~ 165 (360)
T KOG0990|consen 105 RGI---DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT--------------RDAQNALRRVIEKYTA--NTRFA 165 (360)
T ss_pred cCC---cchHHHHHHHHhhccceeccccCceeEEEecchhHhh--------------HHHHHHHHHHHHHhcc--ceEEE
Confidence 110 112233345666653 367899999999974 3344555555555444 34444
Q ss_pred eccCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhccCCC
Q 003525 632 GATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPI 677 (813)
Q Consensus 632 ~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~ 677 (813)
...|.|..+-|++.. ||. .+-|.+.+...-..++..+++.-+.
T Consensus 166 ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~ 208 (360)
T KOG0990|consen 166 TISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQK 208 (360)
T ss_pred EeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchh
Confidence 667999999999997 886 5677777777777777777754443
No 476
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=0.00012 Score=80.02 Aligned_cols=127 Identities=14% Similarity=0.187 Sum_probs=87.1
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHhCC------------------------eEEEEechhhhhhhcchhHHHHHHHHHH
Q 003525 248 PPKGILLYGPPGSGKTLIARAVANETGA------------------------FFFLINGPEIMSKLAGESESNLRKAFEE 303 (813)
Q Consensus 248 ~~~~vLL~GppGsGKTtLar~la~~l~~------------------------~~v~v~~~~l~~~~~g~~~~~l~~vf~~ 303 (813)
-+..+||+||+|+||+++|+++|..+-. .+..+.... .+ ..-.-..+|.+.+.
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~--~~I~idqiR~l~~~ 99 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK-GK--SSLGVDAVREVTEK 99 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc-cc--ccCCHHHHHHHHHH
Confidence 3557999999999999999999987632 112221100 00 01123455555554
Q ss_pred HH----hcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEE
Q 003525 304 AE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREID 379 (813)
Q Consensus 304 a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~ 379 (813)
+. ...--|++||++|.+.. ...+.|+..+++- ..++++|.+|+.++.+.|.+++ |.. .+.
T Consensus 100 ~~~~~~~g~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEP--p~~t~fiL~t~~~~~lLpTIrS--RCq-~~~ 163 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALLTD-----------AAANALLKTLEEP--PENTWFFLACREPARLLATLRS--RCR-LHY 163 (334)
T ss_pred HhhccccCCceEEEEcchHhhCH-----------HHHHHHHHHhcCC--CCCeEEEEEECChhhChHHHHh--ccc-ccc
Confidence 33 33446999999998743 3457888888864 4467888889999999999998 653 478
Q ss_pred cCCCCHHHHHHHHH
Q 003525 380 IGVPDEVGRLEILR 393 (813)
Q Consensus 380 i~~p~~~~R~~Il~ 393 (813)
+++|+.++..+.|.
T Consensus 164 ~~~~~~~~~~~~L~ 177 (334)
T PRK07993 164 LAPPPEQYALTWLS 177 (334)
T ss_pred CCCCCHHHHHHHHH
Confidence 99998887776665
No 477
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.06 E-value=6.2e-06 Score=88.60 Aligned_cols=33 Identities=33% Similarity=0.461 Sum_probs=28.6
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhCC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGA 275 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~ 275 (813)
++.+.++.-+.|.||+|+|||||+++|++.+.+
T Consensus 25 s~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p 57 (293)
T COG1131 25 SFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP 57 (293)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 345678888999999999999999999998753
No 478
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.06 E-value=1.6e-05 Score=80.34 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=28.5
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~ 274 (813)
++.+.+++.+.|.|++|+|||||+++|++...
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 20 SITFLPSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45678899999999999999999999999753
No 479
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.06 E-value=8.4e-06 Score=93.46 Aligned_cols=167 Identities=24% Similarity=0.271 Sum_probs=97.2
Q ss_pred ceeeeecCCCCChhHHHHHHHHHhC---CeEEEEeccchhhhc-----ccccH-------HHHHHHHHHHHhCCCeEEEE
Q 003525 523 KGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTMW-----FGESE-------ANVREIFDKARQSAPCVLFF 587 (813)
Q Consensus 523 ~gilL~GppGtGKT~la~ala~~~~---~~~i~v~~~~l~~~~-----vg~se-------~~i~~vF~~a~~~~p~il~i 587 (813)
..++++|++||||+++|+++..... .+|+.+++..+...+ +|... ......|..| ....|||
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l 239 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFL 239 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEE
Confidence 4599999999999999999987764 579999988763221 11100 0000112222 2358999
Q ss_pred ecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccC-----C----CCcEEEEeccCCC-------CCCCccccCCCCcc
Q 003525 588 DELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----A----KKTVFIIGATNRP-------DIIDPALLRPGRLD 651 (813)
Q Consensus 588 DEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----~----~~~v~vi~aTn~~-------~~ld~allr~gRf~ 651 (813)
|||+.+.. .++..|+..++... . ..++-+|+||+.. ..+.+.|.. |+.
T Consensus 240 ~~i~~l~~--------------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~ 303 (445)
T TIGR02915 240 DEIGDLPL--------------NLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA 303 (445)
T ss_pred echhhCCH--------------HHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc
Confidence 99999843 35666666665321 1 1257788888765 234444443 553
Q ss_pred -cccccCCCCHHHHH----HHHHHHhccC----CCC----CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 003525 652 -QLIYIPLPDEASRL----QIFKACLRKS----PIS----PDVDLSALARYTHGFSGADITEVCQRACKYAI 710 (813)
Q Consensus 652 -~~i~~~~p~~~~r~----~Il~~~l~~~----~~~----~~~d~~~la~~~~g~sg~di~~l~~~a~~~a~ 710 (813)
..|++|+. .+|. .+++.+++++ +.. ...-+..|.....--+-++|++++++|+..+-
T Consensus 304 ~~~i~lPpL--r~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~~ 373 (445)
T TIGR02915 304 EISITIPPL--RSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAE 373 (445)
T ss_pred cceecCCCc--hhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 34455544 4443 3444444322 211 11224555555544567899999999886544
No 480
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.06 E-value=8.4e-05 Score=85.45 Aligned_cols=66 Identities=27% Similarity=0.416 Sum_probs=52.6
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhCCeEEEE
Q 003525 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLI 280 (813)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~~v~v 280 (813)
+++.+.+.+++.-..+-+++++.++..-+. +-.+.+-+||+||+||||||++++||++++..+...
T Consensus 11 ~ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 11 EKYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred hhcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 456778888999999999999999874221 223455789999999999999999999999877654
No 481
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.06 E-value=1.1e-05 Score=79.18 Aligned_cols=77 Identities=27% Similarity=0.357 Sum_probs=51.1
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe--EEEEec----------hhhh-----hh----hc--chhHHHHHH
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLING----------PEIM-----SK----LA--GESESNLRK 299 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~--~v~v~~----------~~l~-----~~----~~--g~~~~~l~~ 299 (813)
++.+.+++.+.|.||+|+|||||+++|++.+... .+.+++ ..+. .. .. -...++-+.
T Consensus 21 ~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv 100 (166)
T cd03223 21 SFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRL 100 (166)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHH
Confidence 4567889999999999999999999999986432 122221 0000 00 00 112345566
Q ss_pred HHHHHHhcCCcEEEeccchh
Q 003525 300 AFEEAEKNAPSIIFIDELDS 319 (813)
Q Consensus 300 vf~~a~~~~p~il~iDEid~ 319 (813)
.+..+....|.++++||-..
T Consensus 101 ~laral~~~p~~lllDEPt~ 120 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATS 120 (166)
T ss_pred HHHHHHHcCCCEEEEECCcc
Confidence 67777788999999999543
No 482
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.05 E-value=5e-05 Score=88.98 Aligned_cols=63 Identities=25% Similarity=0.355 Sum_probs=51.4
Q ss_pred CCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHh---CCeEEEEechhh
Q 003525 212 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEI 285 (813)
Q Consensus 212 ~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l---~~~~v~v~~~~l 285 (813)
..++++.|.+..++++++.+... ......|||+|++||||+++|++|.... +.+|+.+||..+
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~ 258 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVV-----------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAAL 258 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCC
Confidence 46788999999998887777531 1345689999999999999999998875 468999999766
No 483
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.05 E-value=3e-06 Score=80.53 Aligned_cols=85 Identities=27% Similarity=0.477 Sum_probs=55.2
Q ss_pred CceeeeecCCCCChhHHHHHHHHHhCC---eEEEEeccchhhhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccC
Q 003525 522 SKGVLFYGPPGCGKTLLAKAIANECQA---NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 598 (813)
Q Consensus 522 ~~gilL~GppGtGKT~la~ala~~~~~---~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~ 598 (813)
...|+|+|++||||+++|+++...... +|+.+++.++- .++++.+ ....+||+|+|.+..
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~~--- 83 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLSP--- 83 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-H---
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCCH---
Confidence 345999999999999999999988764 45555554422 4456665 445999999999843
Q ss_pred CCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccC
Q 003525 599 SSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATN 635 (813)
Q Consensus 599 ~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn 635 (813)
.....|+..++... ..++-+|+++.
T Consensus 84 -----------~~Q~~L~~~l~~~~-~~~~RlI~ss~ 108 (138)
T PF14532_consen 84 -----------EAQRRLLDLLKRQE-RSNVRLIASSS 108 (138)
T ss_dssp -----------HHHHHHHHHHHHCT-TTTSEEEEEEC
T ss_pred -----------HHHHHHHHHHHhcC-CCCeEEEEEeC
Confidence 34555666665543 33334444444
No 484
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.05 E-value=0.00012 Score=85.19 Aligned_cols=150 Identities=24% Similarity=0.352 Sum_probs=90.2
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHh---CCeEEEEechhhhhhh
Q 003525 213 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKL 289 (813)
Q Consensus 213 ~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l---~~~~v~v~~~~l~~~~ 289 (813)
.+.++.|....++++.+.+..- ...+..|||+|++||||+++|++|.... +.+++.+||..+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV-----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 5677999999988888777641 1346689999999999999999998875 4679999997763211
Q ss_pred -----cchhHHH-------HHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccc---------c
Q 003525 290 -----AGESESN-------LRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------S 348 (813)
Q Consensus 290 -----~g~~~~~-------l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~ 348 (813)
.|..... ....|+.+ ....||||||+.+... +...|+..++.-. .
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPLA-----------LQAKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCCHH-----------HHHHHHHHHhcCCEeeCCCCcce
Confidence 1110000 00123332 3458999999988532 3345555554211 1
Q ss_pred CCcEEEEEecCCCC-------CCCHHhhccCCcceEEEcCCCCHHHHHH
Q 003525 349 RAHVIVMGATNRPN-------SIDPALRRFGRFDREIDIGVPDEVGRLE 390 (813)
Q Consensus 349 ~~~vivi~atn~~~-------~ld~~l~r~~Rf~~~i~i~~p~~~~R~~ 390 (813)
...+-+|++|+..- .+.+.|-. |+. .+.+..|.-.+|.+
T Consensus 320 ~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~e 365 (509)
T PRK05022 320 RVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGD 365 (509)
T ss_pred ecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchh
Confidence 12566777776531 12222222 222 24566666666654
No 485
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.05 E-value=1.1e-05 Score=83.70 Aligned_cols=69 Identities=28% Similarity=0.497 Sum_probs=49.3
Q ss_pred ceEEEECCCCCchHHHHHHHHHHh---CCeEEEEechhhhhhhcch---hHHHHHHHHHHHHhcCCcEEEeccchhc
Q 003525 250 KGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGE---SESNLRKAFEEAEKNAPSIIFIDELDSI 320 (813)
Q Consensus 250 ~~vLL~GppGsGKTtLar~la~~l---~~~~v~v~~~~l~~~~~g~---~~~~l~~vf~~a~~~~p~il~iDEid~l 320 (813)
.+++|+|+||||||+|+.+|+..+ +..++.++..++....... .......+++... ..++|+|||++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 589999999999999999999987 5677888877776533221 1112233444432 5679999999765
No 486
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.05 E-value=1.3e-05 Score=77.91 Aligned_cols=32 Identities=25% Similarity=0.447 Sum_probs=28.7
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~ 274 (813)
++++.++..|.+.||+|||||||++.+|+...
T Consensus 25 sL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~ 56 (259)
T COG4525 25 SLTIASGELVVVLGPSGCGKTTLLNLIAGFVT 56 (259)
T ss_pred ceeecCCCEEEEEcCCCccHHHHHHHHhcCcC
Confidence 45778899999999999999999999999764
No 487
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.05 E-value=1e-05 Score=93.26 Aligned_cols=125 Identities=27% Similarity=0.391 Sum_probs=79.8
Q ss_pred CCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHH-----------hCCeEEEE
Q 003525 212 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANE-----------TGAFFFLI 280 (813)
Q Consensus 212 ~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~-----------l~~~~v~v 280 (813)
-.|+++.|.+..++++++.+... ......|||+|++||||+++|++|-.. .+.+|+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY-----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 35788999999999988887531 123568999999999999999999876 34689999
Q ss_pred echhhhhh-----hcchhHH--------HHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccc
Q 003525 281 NGPEIMSK-----LAGESES--------NLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK 347 (813)
Q Consensus 281 ~~~~l~~~-----~~g~~~~--------~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~ 347 (813)
||..+... ..|.... .-...|+.+. ...||||||+.+... +...|+..+..-.
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~-----------~Q~kLl~~L~e~~ 350 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMPLP-----------LQTRLLRVLEEKE 350 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCCHH-----------HHHHHHhhhhcCe
Confidence 99765321 1111000 0011333332 358999999988532 3345555554311
Q ss_pred ---------cCCcEEEEEecCCC
Q 003525 348 ---------SRAHVIVMGATNRP 361 (813)
Q Consensus 348 ---------~~~~vivi~atn~~ 361 (813)
....+-+|++|+..
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~ 373 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCD 373 (538)
T ss_pred EEecCCCceeccceEEEEecCCC
Confidence 11235677777643
No 488
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.05 E-value=0.00027 Score=72.38 Aligned_cols=177 Identities=19% Similarity=0.244 Sum_probs=109.9
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHh-CCeE----------
Q 003525 209 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-GAFF---------- 277 (813)
Q Consensus 209 ~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l-~~~~---------- 277 (813)
+.+-+++.+.+.++....++.+..- ..-.++++|||+|+||-|.+.+|-+++ |..+
T Consensus 7 yrpksl~~l~~~~e~~~~Lksl~~~-------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~ 73 (351)
T KOG2035|consen 7 YRPKSLDELIYHEELANLLKSLSST-------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTF 73 (351)
T ss_pred cCcchhhhcccHHHHHHHHHHhccc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEE
Confidence 3444556666666666665544321 112579999999999999999888775 3111
Q ss_pred ------------------EEEechhhhhhhcchh-HHHHHHHHHHHHhcC---------CcEEEeccchhccCCCCCCch
Q 003525 278 ------------------FLINGPEIMSKLAGES-ESNLRKAFEEAEKNA---------PSIIFIDELDSIAPKREKTHG 329 (813)
Q Consensus 278 ------------------v~v~~~~l~~~~~g~~-~~~l~~vf~~a~~~~---------p~il~iDEid~l~~~~~~~~~ 329 (813)
+.++.++ .|.. .-.+..++.+..+.. --+++|-|+|.|..
T Consensus 74 ~tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~------- 141 (351)
T KOG2035|consen 74 TTPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR------- 141 (351)
T ss_pred ecCCCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH-------
Confidence 1111111 1211 222344444443322 25788999887753
Q ss_pred hHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhH
Q 003525 330 EVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLE 408 (813)
Q Consensus 330 ~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~-~~~~l~ 408 (813)
.....|...|+.+....++ |..+|....+-+++++ |. ..+.++.|+.++-..++...+++-.+. ...-+.
T Consensus 142 ----dAQ~aLRRTMEkYs~~~Rl--Il~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~ 212 (351)
T KOG2035|consen 142 ----DAQHALRRTMEKYSSNCRL--ILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLK 212 (351)
T ss_pred ----HHHHHHHHHHHHHhcCceE--EEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHH
Confidence 3446677777777665444 4467888888888988 43 347899999999999998777654432 234567
Q ss_pred HHHhhcCCCch
Q 003525 409 RVAKDTHGYVG 419 (813)
Q Consensus 409 ~la~~t~g~~~ 419 (813)
.+++.+.|-..
T Consensus 213 rIa~kS~~nLR 223 (351)
T KOG2035|consen 213 RIAEKSNRNLR 223 (351)
T ss_pred HHHHHhcccHH
Confidence 77777766543
No 489
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.04 E-value=1.6e-05 Score=71.99 Aligned_cols=94 Identities=20% Similarity=0.247 Sum_probs=51.1
Q ss_pred eeeecCCCCChhHHHHHHHHHhCCeEEEEeccchhhhcccccHHHHHHHHHHHHhCCCeEEEEecchhhhhccCCCCCCC
Q 003525 525 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDA 604 (813)
Q Consensus 525 ilL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~~~vg~se~~i~~vF~~a~~~~p~il~iDEid~l~~~r~~~~~~~ 604 (813)
|.|+||||+|||++|+.||..+...+-.-....+. . ++...-|-..+... .++++||+......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy---~----~~~~~~~w~gY~~q-~vvi~DD~~~~~~~-------- 64 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVY---T----RNPGDKFWDGYQGQ-PVVIIDDFGQDNDG-------- 64 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEE---e----CCCccchhhccCCC-cEEEEeecCccccc--------
Confidence 57999999999999999987764222000011110 0 00011111223333 48999998775321
Q ss_pred CchHHHHHHHHHHHHhccC---------C----CCcEEEEeccCC
Q 003525 605 GGAADRVLNQLLTEMDGMN---------A----KKTVFIIGATNR 636 (813)
Q Consensus 605 ~~~~~~vl~~lL~~ld~~~---------~----~~~v~vi~aTn~ 636 (813)
. ......++++.++..+ . -...+||+|||.
T Consensus 65 -~-~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 65 -Y-NYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred -c-chHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence 1 1235666777666432 1 123678888884
No 490
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=2.6e-05 Score=82.50 Aligned_cols=118 Identities=15% Similarity=0.162 Sum_probs=79.8
Q ss_pred CCCceeeeecCCCCChhHHHHHHHHHhCC----------------eEEEEeccchhhhcccccHHHHHHHHHH----HHh
Q 003525 520 SPSKGVLFYGPPGCGKTLLAKAIANECQA----------------NFISVKGPELLTMWFGESEANVREIFDK----ARQ 579 (813)
Q Consensus 520 ~~~~gilL~GppGtGKT~la~ala~~~~~----------------~~i~v~~~~l~~~~vg~se~~i~~vF~~----a~~ 579 (813)
+.+..+||+||.|+||+++|.++|..+-. .+..+.. +-.+..+ +-..+|.+-+. +..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p-~~~~~~I--~idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSP-QGKGRLH--SIETPRAIKKQIWIHPYE 93 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEec-CCCCCcC--cHHHHHHHHHHHhhCccC
Confidence 34567999999999999999999987632 1222211 1000000 12344554444 334
Q ss_pred CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEeccCCCCCCCccccCCCCcccccccCCC
Q 003525 580 SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 659 (813)
Q Consensus 580 ~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p 659 (813)
....|++||++|.+- ....|.||..|+. +..++++|..|+.++.|-|-+++ |+. .+.|+++
T Consensus 94 ~~~kv~ii~~ad~mt--------------~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMT--------------LDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred CCceEEEEechhhcC--------------HHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 455799999999983 3466899999985 45677888888889999888887 875 6667654
No 491
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.04 E-value=6.3e-06 Score=81.79 Aligned_cols=71 Identities=28% Similarity=0.603 Sum_probs=46.7
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHh---CCeEEEEechhhhhhhcch-hHHHHHHHHHHHHhcCCcEEEeccchh
Q 003525 247 KPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGE-SESNLRKAFEEAEKNAPSIIFIDELDS 319 (813)
Q Consensus 247 ~~~~~vLL~GppGsGKTtLar~la~~l---~~~~v~v~~~~l~~~~~g~-~~~~l~~vf~~a~~~~p~il~iDEid~ 319 (813)
..+.+++|+||+|+|||+||.+++.++ +..+..++..+++...... ........++... .+.+|+|||+..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~ 119 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGY 119 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTS
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccce
Confidence 457899999999999999999999875 6778888888887543211 1112233344433 357999999753
No 492
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.03 E-value=6.5e-06 Score=84.41 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=28.3
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~ 274 (813)
++.+.+++.++|.||+|+|||||+++|++.+.
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 20 NLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44578899999999999999999999999763
No 493
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.03 E-value=1.2e-05 Score=82.03 Aligned_cols=118 Identities=14% Similarity=0.197 Sum_probs=75.9
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhCCe--EEEEechhhhh--------------hh-----------------
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS--------------KL----------------- 289 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~~~--~v~v~~~~l~~--------------~~----------------- 289 (813)
++.+.++..+++.||+|.||||+++.|.+.+-+. .+.|+|.+-.. .+
T Consensus 44 sf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~ 123 (325)
T COG4586 44 SFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLK 123 (325)
T ss_pred eeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHH
Confidence 4567888889999999999999999999887432 35555532110 00
Q ss_pred ----cc----------------------------hhHHHHHHHHHHHHhcCCcEEEeccchhccCCCCCCchhHHHHHHH
Q 003525 290 ----AG----------------------------ESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVS 337 (813)
Q Consensus 290 ----~g----------------------------~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~ 337 (813)
++ ...++.+.-+..+.-+.|.|+|+||.--. .+-....
T Consensus 124 ~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg----------LDV~aq~ 193 (325)
T COG4586 124 LIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG----------LDVNAQA 193 (325)
T ss_pred HHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccC----------cchhHHH
Confidence 00 02233444455555678999999994322 1222334
Q ss_pred HHHHHhhccccCCcEEEEEecCCCCCCCHHhhc
Q 003525 338 QLLTLMDGLKSRAHVIVMGATNRPNSIDPALRR 370 (813)
Q Consensus 338 ~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r 370 (813)
.+.+.+..+....+..|+.||+..+++.....|
T Consensus 194 ~ir~Flke~n~~~~aTVllTTH~~~di~~lc~r 226 (325)
T COG4586 194 NIREFLKEYNEERQATVLLTTHIFDDIATLCDR 226 (325)
T ss_pred HHHHHHHHHHHhhCceEEEEecchhhHHHhhhh
Confidence 455666666666777888899998877665554
No 494
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.03 E-value=6.7e-06 Score=91.26 Aligned_cols=32 Identities=28% Similarity=0.455 Sum_probs=28.3
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~ 274 (813)
++.+.+++.+.|.||+|||||||+++||+...
T Consensus 34 sl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~ 65 (375)
T PRK09452 34 DLTINNGEFLTLLGPSGCGKTTVLRLIAGFET 65 (375)
T ss_pred EEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45567899999999999999999999999764
No 495
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.03 E-value=9.4e-06 Score=83.24 Aligned_cols=32 Identities=38% Similarity=0.579 Sum_probs=28.3
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~ 274 (813)
++.+.+++.+.|.||+|+|||||+++|++.+.
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 20 SLTVEPGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45678899999999999999999999999763
No 496
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.03 E-value=9.1e-05 Score=81.02 Aligned_cols=186 Identities=19% Similarity=0.278 Sum_probs=121.3
Q ss_pred ccccChHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCchHHHHHHHHHHhC-----CeEEEEechhhhh--
Q 003525 215 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG-----AFFFLINGPEIMS-- 287 (813)
Q Consensus 215 ~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGsGKTtLar~la~~l~-----~~~v~v~~~~l~~-- 287 (813)
..+.|-+.++..+++++..++ ..+.+..+.+.|-||+|||.++.-+-.... ...+++||.++..
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hl---------e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHL---------ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCccchHHHHHHHHHHHHhhh---------hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 458899999999999987643 346678899999999999999886654432 2448889875421
Q ss_pred --------hh----c-chhHHHHHHHHHHHHh-c-CCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcE
Q 003525 288 --------KL----A-GESESNLRKAFEEAEK-N-APSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHV 352 (813)
Q Consensus 288 --------~~----~-g~~~~~l~~vf~~a~~-~-~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v 352 (813)
.+ . +..+......|+.-.. . .+-++++||+|.|+...+ .++..|..|-. ....++
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~--------~vLy~lFewp~--lp~sr~ 290 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ--------TVLYTLFEWPK--LPNSRI 290 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc--------ceeeeehhccc--CCccee
Confidence 11 0 1112222333433322 2 356889999999984432 22233332222 234578
Q ss_pred EEEEecCCCCCCCHHhhc----cCCcceEEEcCCCCHHHHHHHHHHHhcCCcccc--chhhHHHHhhcCCCch
Q 003525 353 IVMGATNRPNSIDPALRR----FGRFDREIDIGVPDEVGRLEILRIHTKNMKLAE--DVDLERVAKDTHGYVG 419 (813)
Q Consensus 353 ivi~atn~~~~ld~~l~r----~~Rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~--~~~l~~la~~t~g~~~ 419 (813)
++||..|..+.-|..|-| .+--...+.|++++.++..+||+..+....... +..++..|+...+-+|
T Consensus 291 iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG 363 (529)
T KOG2227|consen 291 ILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG 363 (529)
T ss_pred eeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch
Confidence 899999987766655543 233457789999999999999998887665433 2346667777777666
No 497
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.03 E-value=9.8e-06 Score=84.53 Aligned_cols=32 Identities=28% Similarity=0.427 Sum_probs=28.3
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~ 274 (813)
++.+.+++.+.|.||+|+|||||+++|++...
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 21 SFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 34578899999999999999999999998753
No 498
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.02 E-value=7.9e-06 Score=90.14 Aligned_cols=32 Identities=38% Similarity=0.534 Sum_probs=28.2
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~ 274 (813)
++.+.+++.+.|.||+|||||||+++||+...
T Consensus 24 s~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~ 55 (353)
T TIGR03265 24 SLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER 55 (353)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC
Confidence 44567899999999999999999999999864
No 499
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=3.3e-05 Score=84.00 Aligned_cols=132 Identities=20% Similarity=0.294 Sum_probs=85.5
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHhCC-------------------------eEEEEechhh---hhhh-cchhHHHH
Q 003525 247 KPPKGILLYGPPGSGKTLIARAVANETGA-------------------------FFFLINGPEI---MSKL-AGESESNL 297 (813)
Q Consensus 247 ~~~~~vLL~GppGsGKTtLar~la~~l~~-------------------------~~v~v~~~~l---~~~~-~g~~~~~l 297 (813)
.-+..+||+||+|+|||++|+.+|+.+.. .++.+....- -++. ..-.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 34567999999999999999999988632 1233322100 0000 00124556
Q ss_pred HHHHHHHHh----cCCcEEEeccchhccCCCCCCchhHHHHHHHHHHHHhhccccCCcEEEEEecCCCCCCCHHhhccCC
Q 003525 298 RKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGR 373 (813)
Q Consensus 298 ~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~R 373 (813)
|.+.+.+.. ....|+++|+++.+- ....+.|+..++.... .+.+|.+|+.++.+.+.+++ |
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld-----------~~a~naLLk~LEep~~--~~~~Ilvth~~~~ll~ti~S--R 163 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMN-----------LQAANSLLKVLEEPPP--QVVFLLVSHAADKVLPTIKS--R 163 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCC-----------HHHHHHHHHHHHhCcC--CCEEEEEeCChHhChHHHHH--H
Confidence 776665543 234588888888763 2345667777876643 35566688999999999887 4
Q ss_pred cceEEEcCCCCHHHHHHHHHH
Q 003525 374 FDREIDIGVPDEVGRLEILRI 394 (813)
Q Consensus 374 f~~~i~i~~p~~~~R~~Il~~ 394 (813)
. ..+.+++|+.++..+.|..
T Consensus 164 c-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 164 C-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred h-hhhcCCCCCHHHHHHHHHh
Confidence 3 5578899988887776653
No 500
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.02 E-value=1.2e-05 Score=82.00 Aligned_cols=32 Identities=34% Similarity=0.511 Sum_probs=28.2
Q ss_pred hhCCCCCceEEEECCCCCchHHHHHHHHHHhC
Q 003525 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (813)
Q Consensus 243 ~l~i~~~~~vLL~GppGsGKTtLar~la~~l~ 274 (813)
++.+.+++.+.|.||+|+|||||+++|++...
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 22 SFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44567899999999999999999999999753
Done!