BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003526
         (813 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3K6S|A Chain A, Structure Of Integrin Alphaxbeta2 Ectodomain
 pdb|3K6S|C Chain C, Structure Of Integrin Alphaxbeta2 Ectodomain
 pdb|3K6S|E Chain E, Structure Of Integrin Alphaxbeta2 Ectodomain
 pdb|3K6S|G Chain G, Structure Of Integrin Alphaxbeta2 Ectodomain
 pdb|3K71|A Chain A, Structure Of Integrin Alphax Beta2 Ectodomain
 pdb|3K71|C Chain C, Structure Of Integrin Alphax Beta2 Ectodomain
 pdb|3K71|E Chain E, Structure Of Integrin Alphax Beta2 Ectodomain
 pdb|3K71|G Chain G, Structure Of Integrin Alphax Beta2 Ectodomain
 pdb|3K72|A Chain A, Structure Of Integrin Alphax Beta2
 pdb|3K72|C Chain C, Structure Of Integrin Alphax Beta2
          Length = 1095

 Score = 32.0 bits (71), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 271 IYLKGEKYQLRGHINVQSRSPIGVHELP--ENIIVDILNGDGSISNRTTATL 320
           +YL G  + L G   +  R P+   E P  E  IV +++G GSIS+R  AT+
Sbjct: 101 MYLTGLCF-LLGPTQLTQRLPVSRQECPRQEQDIVFLIDGSGSISSRNFATM 151


>pdb|3IQ0|A Chain A, Crystal Structure Of A Putative Ribokinase Ii In Complex
           With Atp And Mg+2 From E.Coli
 pdb|3IQ0|B Chain B, Crystal Structure Of A Putative Ribokinase Ii In Complex
           With Atp And Mg+2 From E.Coli
 pdb|3K9E|A Chain A, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
           From E.Coli
 pdb|3K9E|B Chain B, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
           From E.Coli
          Length = 330

 Score = 30.4 bits (67), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 7/56 (12%)

Query: 610 VIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGLDFLVFEQPEKTILSGHVEGNR 665
           +I  V  DGFG   I R + + V       DI+G+  L  E      ++ H  G+R
Sbjct: 56  IISCVGNDGFGDINIHRLAADGV-------DIRGISVLPLEATGSAFVTYHNSGDR 104


>pdb|3VN3|A Chain A, Fungal Antifreeze Protein Exerts Hyperactivity By
           Constructing An Inequable Beta-Helix
 pdb|3VN3|B Chain B, Fungal Antifreeze Protein Exerts Hyperactivity By
           Constructing An Inequable Beta-Helix
          Length = 223

 Score = 29.6 bits (65), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 69/152 (45%), Gaps = 11/152 (7%)

Query: 448 EASKPGYYLRQVGPNSFSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRN-NSVSW 506
            AS  G+ L   G  +FS    SQ++ ++ +  D G P PS+L +  GD G    N+ + 
Sbjct: 41  AASLTGFSLILSGTGTFSTS--SQVTGQL-TGADYGTPTPSILTTAIGDMGTAXINAATR 97

Query: 507 AGGSF-HFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREV-IFQATRVAYSATG-T 563
           +G  F        G   L P L ++  S  A A    SG S +  IFQ       ATG  
Sbjct: 98  SGPDFLEIYTGALGGTTLLPGLYKWTSSVGASADFTISGTSTDTWIFQIDGTLDVATGKQ 157

Query: 564 ITLLSG-QPKDGVSVEARS---ESKGYYEETV 591
           ITL+ G Q K+ + V A +   E    +E T+
Sbjct: 158 ITLVGGAQAKNIIWVVAGAVNIEVGAKFEGTI 189


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.134    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,285,103
Number of Sequences: 62578
Number of extensions: 1130780
Number of successful extensions: 2524
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2522
Number of HSP's gapped (non-prelim): 13
length of query: 813
length of database: 14,973,337
effective HSP length: 107
effective length of query: 706
effective length of database: 8,277,491
effective search space: 5843908646
effective search space used: 5843908646
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)