Query 003526
Match_columns 813
No_of_seqs 213 out of 251
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 01:06:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003526.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003526hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1948 Metalloproteinase-rela 100.0 2E-148 4E-153 1250.5 67.4 765 1-812 380-1165(1165)
2 KOG1948 Metalloproteinase-rela 100.0 5.3E-65 1.2E-69 575.1 51.0 564 19-733 28-635 (1165)
3 COG4932 Predicted outer membra 99.4 1.1E-10 2.4E-15 139.8 33.2 285 329-642 1111-1424(1531)
4 COG4932 Predicted outer membra 99.4 1.4E-10 3.1E-15 138.9 26.3 309 398-733 1077-1415(1531)
5 PF13620 CarboxypepD_reg: Carb 98.9 6.3E-09 1.4E-13 91.0 9.1 79 471-553 1-81 (82)
6 PF13620 CarboxypepD_reg: Carb 98.9 3.5E-09 7.5E-14 92.7 7.1 79 559-647 1-80 (82)
7 PF13715 DUF4480: Domain of un 98.2 1.1E-05 2.4E-10 71.6 10.2 77 471-554 1-77 (88)
8 cd03863 M14_CPD_II The second 98.1 1.1E-05 2.5E-10 90.6 10.5 85 464-555 291-375 (375)
9 cd03864 M14_CPN Peptidase M14 97.9 5E-05 1.1E-09 85.9 9.9 103 443-553 277-391 (392)
10 cd03865 M14_CPE_H Peptidase M1 97.9 5.6E-05 1.2E-09 85.5 10.0 103 443-553 287-401 (402)
11 cd06245 M14_CPD_III The third 97.9 6.4E-05 1.4E-09 84.4 10.3 78 467-553 284-361 (363)
12 PF13715 DUF4480: Domain of un 97.8 0.00017 3.7E-09 64.0 9.7 51 560-616 2-53 (88)
13 PF05738 Cna_B: Cna protein B- 97.7 0.00013 2.8E-09 62.0 6.8 63 486-548 1-68 (70)
14 cd03863 M14_CPD_II The second 97.6 0.00017 3.6E-09 81.3 9.3 77 557-648 296-373 (375)
15 cd03866 M14_CPM Peptidase M14 97.6 0.00023 4.9E-09 80.4 10.1 75 464-544 289-363 (376)
16 PF07210 DUF1416: Protein of u 97.6 0.00041 8.9E-09 60.5 8.7 56 559-617 9-64 (85)
17 cd03864 M14_CPN Peptidase M14 97.6 0.00021 4.5E-09 81.0 9.0 75 558-647 316-390 (392)
18 cd03858 M14_CP_N-E_like Carbox 97.5 0.00034 7.4E-09 79.0 10.2 77 468-552 296-373 (374)
19 cd06245 M14_CPD_III The third 97.5 0.00033 7.2E-09 78.7 9.3 74 558-647 287-360 (363)
20 cd03868 M14_CPD_I The first ca 97.5 0.00038 8.2E-09 78.6 9.7 79 466-552 292-371 (372)
21 cd03865 M14_CPE_H Peptidase M1 97.5 0.00036 7.8E-09 79.1 9.4 74 559-647 327-400 (402)
22 cd03867 M14_CPZ Peptidase M14- 97.4 0.00063 1.4E-08 77.4 9.4 77 468-552 316-394 (395)
23 PF07210 DUF1416: Protein of u 97.2 0.0031 6.8E-08 55.1 10.1 77 468-551 6-83 (85)
24 cd03868 M14_CPD_I The first ca 97.2 0.00098 2.1E-08 75.3 8.4 55 556-616 294-348 (372)
25 PF14686 fn3_3: Polysaccharide 97.2 0.0025 5.3E-08 58.1 9.2 76 470-547 3-90 (95)
26 cd03858 M14_CP_N-E_like Carbox 97.1 0.0014 3.1E-08 74.0 8.8 53 558-616 298-350 (374)
27 PF08400 phage_tail_N: Prophag 97.0 0.0049 1.1E-07 59.3 10.3 56 559-616 4-65 (134)
28 PRK15036 hydroxyisourate hydro 97.0 0.0013 2.9E-08 63.8 6.3 60 470-530 27-94 (137)
29 cd03866 M14_CPM Peptidase M14 96.9 0.0038 8.3E-08 70.6 9.5 56 557-616 294-349 (376)
30 PRK15036 hydroxyisourate hydro 96.8 0.0051 1.1E-07 59.7 8.6 60 559-619 28-95 (137)
31 cd03867 M14_CPZ Peptidase M14- 96.8 0.004 8.6E-08 71.0 8.6 53 558-616 318-370 (395)
32 PF14686 fn3_3: Polysaccharide 96.8 0.0066 1.4E-07 55.3 8.3 58 558-616 3-69 (95)
33 PF08400 phage_tail_N: Prophag 96.7 0.0074 1.6E-07 58.1 8.2 57 471-530 4-67 (134)
34 PF05738 Cna_B: Cna protein B- 96.6 0.016 3.4E-07 49.1 9.4 62 119-193 2-65 (70)
35 cd00421 intradiol_dioxygenase 96.4 0.0065 1.4E-07 59.7 6.3 53 558-611 12-80 (146)
36 cd03869 M14_CPX_like Peptidase 96.3 0.0097 2.1E-07 67.6 8.2 102 443-552 290-404 (405)
37 KOG2649 Zinc carboxypeptidase 96.3 0.013 2.9E-07 66.5 8.5 87 462-556 370-456 (500)
38 PF00576 Transthyretin: HIUase 96.2 0.025 5.4E-07 53.1 8.9 91 470-561 1-110 (112)
39 COG1470 Predicted membrane pro 96.1 3.7 7.9E-05 47.2 27.1 75 469-553 186-261 (513)
40 COG3485 PcaH Protocatechuate 3 96.0 0.012 2.6E-07 61.7 6.1 70 558-637 73-160 (226)
41 cd00421 intradiol_dioxygenase 95.9 0.017 3.7E-07 56.8 6.6 65 470-544 12-93 (146)
42 PF09430 DUF2012: Protein of u 95.9 0.031 6.7E-07 53.3 8.2 55 486-542 7-61 (123)
43 TIGR02962 hdxy_isourate hydrox 95.8 0.02 4.3E-07 53.8 6.0 59 471-530 2-69 (112)
44 cd03869 M14_CPX_like Peptidase 95.7 0.022 4.8E-07 64.8 7.3 75 558-647 329-404 (405)
45 KOG2649 Zinc carboxypeptidase 95.7 0.034 7.4E-07 63.3 8.4 78 559-651 379-456 (500)
46 PF11974 MG1: Alpha-2-macroglo 95.5 0.085 1.8E-06 48.2 8.9 52 563-616 18-71 (97)
47 TIGR02962 hdxy_isourate hydrox 95.2 0.084 1.8E-06 49.6 8.0 59 560-619 3-70 (112)
48 cd05822 TLP_HIUase HIUase (5-h 95.0 0.14 3E-06 48.2 8.8 59 471-530 2-69 (112)
49 PF00775 Dioxygenase_C: Dioxyg 95.0 0.075 1.6E-06 54.3 7.6 74 469-544 29-128 (183)
50 PF09430 DUF2012: Protein of u 94.9 0.079 1.7E-06 50.5 7.1 54 119-188 8-61 (123)
51 smart00095 TR_THY Transthyreti 94.8 0.22 4.7E-06 47.4 9.7 97 469-566 3-118 (121)
52 cd03464 3,4-PCD_beta Protocate 94.8 0.052 1.1E-06 56.9 6.1 52 559-611 67-137 (220)
53 TIGR02438 catachol_actin catec 94.8 0.035 7.5E-07 60.1 4.9 52 559-611 134-199 (281)
54 cd05821 TLP_Transthyretin Tran 94.8 0.2 4.2E-06 47.7 9.2 95 469-564 6-119 (121)
55 PF00775 Dioxygenase_C: Dioxyg 94.7 0.067 1.5E-06 54.6 6.6 53 558-611 30-98 (183)
56 cd05469 Transthyretin_like Tra 94.6 0.21 4.5E-06 47.0 8.9 90 470-560 1-109 (113)
57 cd03462 1,2-CCD chlorocatechol 94.6 0.045 9.8E-07 58.2 5.1 52 559-611 101-166 (247)
58 TIGR02465 chlorocat_1_2 chloro 94.5 0.06 1.3E-06 57.3 5.6 52 559-611 100-165 (246)
59 TIGR02422 protocat_beta protoc 94.4 0.068 1.5E-06 56.0 5.9 52 559-611 62-132 (220)
60 cd03463 3,4-PCD_alpha Protocat 94.3 0.07 1.5E-06 54.5 5.6 53 558-611 37-107 (185)
61 cd03462 1,2-CCD chlorocatechol 94.3 0.067 1.5E-06 56.9 5.6 73 469-543 99-195 (247)
62 cd03458 Catechol_intradiol_dio 94.2 0.067 1.4E-06 57.3 5.4 52 559-611 106-171 (256)
63 TIGR02465 chlorocat_1_2 chloro 94.2 0.071 1.5E-06 56.8 5.6 72 470-543 99-194 (246)
64 PF10670 DUF4198: Domain of un 94.2 0.13 2.8E-06 53.0 7.5 54 472-528 153-212 (215)
65 TIGR02423 protocat_alph protoc 94.1 0.088 1.9E-06 54.2 5.9 52 559-611 41-111 (193)
66 cd03464 3,4-PCD_beta Protocate 94.0 0.088 1.9E-06 55.1 5.6 69 470-542 66-154 (220)
67 cd03459 3,4-PCD Protocatechuat 94.0 0.096 2.1E-06 52.2 5.6 68 470-543 16-103 (158)
68 cd03459 3,4-PCD Protocatechuat 94.0 0.08 1.7E-06 52.8 5.1 52 559-611 17-87 (158)
69 PF10670 DUF4198: Domain of un 93.9 0.2 4.2E-06 51.6 8.1 53 562-616 155-212 (215)
70 TIGR02422 protocat_beta protoc 93.8 0.097 2.1E-06 54.9 5.6 69 470-542 61-149 (220)
71 cd03461 1,2-HQD Hydroxyquinol 93.8 0.095 2.1E-06 56.7 5.6 53 558-611 121-187 (277)
72 cd03460 1,2-CTD Catechol 1,2 d 93.8 0.091 2E-06 57.0 5.4 52 559-611 126-191 (282)
73 COG3485 PcaH Protocatechuate 3 93.8 0.098 2.1E-06 54.9 5.4 70 471-544 74-162 (226)
74 cd03463 3,4-PCD_alpha Protocat 93.7 0.11 2.3E-06 53.2 5.5 69 469-543 36-123 (185)
75 TIGR02439 catechol_proteo cate 93.7 0.099 2.1E-06 56.8 5.5 52 559-611 130-195 (285)
76 TIGR02438 catachol_actin catec 93.7 0.1 2.2E-06 56.6 5.5 73 469-543 132-228 (281)
77 cd03458 Catechol_intradiol_dio 93.7 0.11 2.3E-06 55.7 5.6 73 469-543 104-200 (256)
78 TIGR02439 catechol_proteo cate 93.6 0.11 2.3E-06 56.5 5.5 75 468-544 127-225 (285)
79 cd03460 1,2-CTD Catechol 1,2 d 93.5 0.1 2.3E-06 56.5 5.4 73 469-543 124-220 (282)
80 cd03461 1,2-HQD Hydroxyquinol 93.5 0.11 2.4E-06 56.2 5.5 73 469-543 120-216 (277)
81 TIGR00864 PCC polycystin catio 93.2 51 0.0011 46.0 38.5 162 55-249 1661-1846(2740)
82 TIGR02423 protocat_alph protoc 93.0 0.16 3.5E-06 52.3 5.6 69 469-543 39-127 (193)
83 PF01060 DUF290: Transthyretin 92.8 0.22 4.7E-06 43.9 5.3 45 561-606 1-49 (80)
84 cd05822 TLP_HIUase HIUase (5-h 92.1 0.52 1.1E-05 44.3 7.1 58 561-619 4-70 (112)
85 PF08308 PEGA: PEGA domain; I 92.1 0.49 1.1E-05 40.2 6.5 59 487-555 11-69 (71)
86 PF02369 Big_1: Bacterial Ig-l 91.3 0.63 1.4E-05 42.7 6.8 59 469-529 24-90 (100)
87 PF02369 Big_1: Bacterial Ig-l 91.1 0.72 1.6E-05 42.3 7.0 57 559-616 26-89 (100)
88 COG2351 Transthyretin-like pro 90.8 0.55 1.2E-05 44.1 5.8 60 470-530 9-77 (124)
89 PF11974 MG1: Alpha-2-macroglo 90.8 0.84 1.8E-05 41.7 7.0 54 471-526 14-69 (97)
90 TIGR00864 PCC polycystin catio 90.4 98 0.0021 43.5 52.1 40 488-529 1896-1935(2740)
91 cd05469 Transthyretin_like Tra 90.0 1.2 2.6E-05 42.0 7.4 57 561-618 4-69 (113)
92 PF00576 Transthyretin: HIUase 89.7 0.55 1.2E-05 44.2 4.9 59 560-619 3-71 (112)
93 COG2373 Large extracellular al 89.1 15 0.00034 49.1 19.0 165 472-638 307-504 (1621)
94 cd05821 TLP_Transthyretin Tran 89.1 1.6 3.4E-05 41.6 7.6 58 560-618 9-75 (121)
95 cd03457 intradiol_dioxygenase_ 88.9 0.7 1.5E-05 47.5 5.5 51 471-522 28-100 (188)
96 PF01190 Pollen_Ole_e_I: Polle 87.8 0.93 2E-05 41.2 5.0 42 560-601 1-54 (97)
97 smart00634 BID_1 Bacterial Ig- 87.5 2.4 5.2E-05 38.0 7.5 62 467-530 17-85 (92)
98 KOG3006 Transthyretin and rela 87.2 5.1 0.00011 37.8 9.3 89 470-559 21-127 (132)
99 cd03457 intradiol_dioxygenase_ 86.3 1.5 3.2E-05 45.1 6.0 51 559-610 28-100 (188)
100 COG2373 Large extracellular al 86.1 18 0.00039 48.4 17.0 202 397-614 318-600 (1621)
101 PF01060 DUF290: Transthyretin 86.0 1.3 2.9E-05 38.9 4.8 39 397-440 9-47 (80)
102 smart00095 TR_THY Transthyreti 86.0 1.9 4E-05 41.2 6.1 57 560-617 6-71 (121)
103 PF07495 Y_Y_Y: Y_Y_Y domain; 85.1 1.4 3.1E-05 36.5 4.4 36 149-189 30-65 (66)
104 COG2351 Transthyretin-like pro 83.8 3.9 8.6E-05 38.6 6.9 56 562-618 13-77 (124)
105 PRK15310 fimbrial outer membra 81.4 19 0.00041 44.8 13.4 66 540-615 769-834 (895)
106 COG5266 CbiK ABC-type Co2+ tra 78.9 6.2 0.00013 42.1 7.2 65 387-452 170-241 (264)
107 KOG3006 Transthyretin and rela 77.4 11 0.00023 35.7 7.5 70 559-629 22-100 (132)
108 smart00634 BID_1 Bacterial Ig- 76.9 13 0.00028 33.3 7.9 57 559-616 21-83 (92)
109 PF11008 DUF2846: Protein of u 74.9 6.1 0.00013 37.2 5.5 40 146-193 56-95 (117)
110 PRK15310 fimbrial outer membra 74.6 35 0.00075 42.6 12.9 109 387-514 682-822 (895)
111 COG1470 Predicted membrane pro 72.5 2E+02 0.0043 33.7 25.6 79 154-242 224-307 (513)
112 PF00041 fn3: Fibronectin type 71.6 17 0.00037 30.6 7.2 49 568-616 26-76 (85)
113 PRK15235 outer membrane fimbri 71.3 87 0.0019 39.5 15.8 111 502-615 668-784 (814)
114 PF13750 Big_3_3: Bacterial Ig 70.5 72 0.0016 31.9 12.1 31 592-622 102-138 (158)
115 PF12866 DUF3823: Protein of u 70.0 39 0.00084 35.7 10.6 82 468-553 20-111 (222)
116 PF10179 DUF2369: Uncharacteri 69.4 1.6E+02 0.0034 32.7 15.4 106 509-615 15-147 (300)
117 KOG2740 Clathrin-associated pr 67.0 56 0.0012 36.7 11.2 136 428-581 252-393 (418)
118 KOG0518 Actin-binding cytoskel 66.9 3.7E+02 0.008 34.5 42.2 185 427-616 712-928 (1113)
119 TIGR03000 plancto_dom_1 Planct 65.9 16 0.00034 32.0 5.5 65 573-646 11-75 (75)
120 COG5266 CbiK ABC-type Co2+ tra 64.3 21 0.00045 38.3 7.1 56 560-617 174-242 (264)
121 PF07495 Y_Y_Y: Y_Y_Y domain; 64.3 18 0.0004 29.7 5.6 26 691-716 23-49 (66)
122 PRK15207 long polar fimbrial o 63.0 1.6E+02 0.0034 37.4 15.8 108 503-615 698-811 (842)
123 PF08308 PEGA: PEGA domain; I 62.6 69 0.0015 26.9 9.0 42 699-747 28-69 (71)
124 PF11589 DUF3244: Domain of un 61.4 36 0.00077 31.4 7.5 42 120-166 49-93 (106)
125 TIGR03000 plancto_dom_1 Planct 59.9 21 0.00045 31.3 5.1 61 487-551 11-75 (75)
126 PF13754 Big_3_4: Bacterial Ig 59.4 23 0.00049 28.7 5.1 43 47-92 5-50 (54)
127 COG3188 FimD P pilus assembly 56.5 4.7E+02 0.01 33.3 18.2 109 502-616 693-807 (835)
128 PF13750 Big_3_3: Bacterial Ig 56.3 1.1E+02 0.0024 30.6 10.4 102 60-166 12-131 (158)
129 PRK15223 pilin outer membrane 54.0 2.4E+02 0.0051 35.8 15.3 107 503-615 696-808 (836)
130 PRK15207 long polar fimbrial o 53.4 93 0.002 39.4 11.5 96 426-524 698-810 (842)
131 PRK06655 flgD flagellar basal 53.1 40 0.00087 35.7 7.1 25 587-616 155-179 (225)
132 PRK15235 outer membrane fimbri 52.1 1.3E+02 0.0028 38.0 12.4 98 425-524 668-783 (814)
133 PRK15298 fimbrial outer membra 51.8 2.8E+02 0.0061 35.2 15.4 108 503-615 707-820 (848)
134 PF00041 fn3: Fibronectin type 51.1 1.4E+02 0.0031 24.8 9.6 44 119-166 31-75 (85)
135 KOG0518 Actin-binding cytoskel 50.5 6.7E+02 0.015 32.4 47.8 184 422-616 620-832 (1113)
136 TIGR03503 conserved hypothetic 50.4 2.5E+02 0.0055 32.1 13.1 111 594-714 169-286 (374)
137 PF11797 DUF3324: Protein of u 50.1 16 0.00035 35.6 3.4 26 153-183 101-126 (140)
138 PF13860 FlgD_ig: FlgD Ig-like 50.1 44 0.00095 29.2 5.8 53 559-616 26-78 (81)
139 PF11008 DUF2846: Protein of u 50.0 26 0.00057 32.8 4.7 37 50-91 55-91 (117)
140 PF03785 Peptidase_C25_C: Pept 50.0 58 0.0013 28.9 6.3 51 486-540 25-80 (81)
141 PF14289 DUF4369: Domain of un 50.0 1.1E+02 0.0023 27.4 8.6 49 15-67 11-64 (106)
142 PF09912 DUF2141: Uncharacteri 47.6 19 0.00041 33.8 3.3 24 143-166 38-61 (112)
143 PF01190 Pollen_Ole_e_I: Polle 47.6 25 0.00055 31.8 4.0 37 483-520 18-59 (97)
144 PRK15294 putative fimbrial out 47.5 3.2E+02 0.0069 34.7 15.0 106 503-611 701-812 (845)
145 TIGR03503 conserved hypothetic 45.8 2.1E+02 0.0046 32.7 11.6 49 49-104 166-220 (374)
146 KOG4221 Receptor mediating net 45.4 8.6E+02 0.019 32.1 22.5 270 433-714 484-794 (1381)
147 PF14900 DUF4493: Domain of un 45.3 3.9E+02 0.0084 28.1 14.0 86 515-602 61-160 (235)
148 PRK15223 pilin outer membrane 45.0 1.8E+02 0.0038 36.9 12.1 96 425-524 695-807 (836)
149 PRK15298 fimbrial outer membra 44.6 1.7E+02 0.0036 37.2 11.8 97 425-524 706-819 (848)
150 PF05817 Ribophorin_II: Oligos 44.6 6.9E+02 0.015 30.8 17.5 56 560-616 293-361 (636)
151 smart00060 FN3 Fibronectin typ 44.2 37 0.00079 27.0 4.2 25 592-616 53-77 (83)
152 PF14347 DUF4399: Domain of un 44.1 62 0.0013 29.1 5.8 58 474-538 24-81 (87)
153 PRK15273 putative fimbrial out 43.8 4.4E+02 0.0095 33.7 15.3 106 503-615 683-794 (881)
154 PF01835 A2M_N: MG2 domain; I 42.7 1.3E+02 0.0029 26.7 8.0 40 489-528 38-86 (99)
155 PF03785 Peptidase_C25_C: Pept 42.3 82 0.0018 28.0 6.1 47 399-456 25-74 (81)
156 PRK15294 putative fimbrial out 42.0 1.5E+02 0.0033 37.5 11.0 96 426-524 701-813 (845)
157 PF11589 DUF3244: Domain of un 42.0 46 0.001 30.7 4.9 58 559-617 33-95 (106)
158 PF03272 Enhancin: Viral enhan 40.2 3.2E+02 0.0069 34.4 13.0 74 470-545 445-519 (775)
159 PRK15248 fimbrial outer membra 39.5 2E+02 0.0044 36.5 11.5 94 426-524 710-820 (853)
160 PF10794 DUF2606: Protein of u 39.3 99 0.0021 29.5 6.4 56 471-528 43-107 (131)
161 PRK12813 flgD flagellar basal 38.8 94 0.002 32.9 7.1 55 106-166 112-173 (223)
162 PRK06655 flgD flagellar basal 37.9 84 0.0018 33.3 6.7 54 106-165 114-177 (225)
163 PF09116 gp45-slide_C: gp45 sl 37.5 85 0.0018 29.7 5.8 42 30-71 33-87 (112)
164 PF14900 DUF4493: Domain of un 37.2 1.7E+02 0.0038 30.7 9.0 46 31-79 34-80 (235)
165 PF13953 PapC_C: PapC C-termin 36.7 57 0.0012 27.6 4.2 45 475-524 2-48 (68)
166 PRK15284 putative fimbrial out 36.3 2.5E+02 0.0054 35.9 11.6 94 426-524 706-816 (881)
167 PF13115 YtkA: YtkA-like 35.4 1.7E+02 0.0037 25.4 7.3 20 472-494 24-43 (86)
168 PF13754 Big_3_4: Bacterial Ig 35.2 1.2E+02 0.0027 24.4 5.8 33 589-622 5-39 (54)
169 smart00557 IG_FLMN Filamin-typ 35.1 2.2E+02 0.0049 25.3 8.1 47 113-165 26-75 (93)
170 PF10577 UPF0560: Uncharacteri 34.3 2E+02 0.0043 35.8 9.7 59 472-531 3-63 (807)
171 COG3188 FimD P pilus assembly 34.3 5.4E+02 0.012 32.7 13.9 93 425-521 693-801 (835)
172 KOG4802 Adhesion-type protein 34.2 1.9E+02 0.0042 33.2 8.8 115 505-622 205-340 (516)
173 PF12866 DUF3823: Protein of u 34.0 1.5E+02 0.0033 31.3 7.8 89 103-205 20-115 (222)
174 PF14054 DUF4249: Domain of un 33.9 1.4E+02 0.0029 32.3 7.8 46 572-617 60-110 (298)
175 PF13860 FlgD_ig: FlgD Ig-like 32.5 2.7E+02 0.0059 24.2 8.0 42 120-166 26-77 (81)
176 KOG0196 Tyrosine kinase, EPH ( 31.7 1.2E+03 0.025 29.7 17.0 115 596-715 398-518 (996)
177 PRK15273 putative fimbrial out 31.7 3.2E+02 0.0069 34.9 11.4 94 426-524 683-793 (881)
178 PRK09828 putative fimbrial out 31.7 8.4E+02 0.018 31.1 15.2 106 503-613 718-829 (865)
179 PRK15255 fimbrial outer membra 30.5 9E+02 0.02 30.7 15.1 108 504-615 690-803 (829)
180 PF10794 DUF2606: Protein of u 30.5 2.9E+02 0.0064 26.4 8.0 55 560-615 44-106 (131)
181 PRK15248 fimbrial outer membra 29.7 8.3E+02 0.018 31.1 14.6 106 503-615 710-821 (853)
182 PF09912 DUF2141: Uncharacteri 29.1 99 0.0022 29.0 4.9 27 591-618 38-64 (112)
183 PRK15304 putative fimbrial out 28.9 3.8E+02 0.0081 33.9 11.4 94 426-524 659-769 (801)
184 PF10577 UPF0560: Uncharacteri 28.5 1.2E+02 0.0027 37.5 6.7 53 397-459 14-67 (807)
185 PF05751 FixH: FixH; InterPro 27.6 2.5E+02 0.0053 27.0 7.7 54 470-525 69-130 (146)
186 PRK15304 putative fimbrial out 27.4 1.3E+03 0.029 29.0 18.6 105 503-612 659-769 (801)
187 PRK12633 flgD flagellar basal 26.9 1.8E+02 0.0038 31.0 6.9 42 120-166 130-181 (230)
188 PF06030 DUF916: Bacterial pro 26.7 3.6E+02 0.0079 25.6 8.3 53 501-555 50-103 (121)
189 PRK15284 putative fimbrial out 26.7 1.3E+03 0.028 29.6 15.6 106 503-615 706-817 (881)
190 PRK15314 outer membrane protei 26.3 1.6E+02 0.0034 40.0 7.2 68 428-497 1835-1920(2435)
191 PRK12812 flgD flagellar basal 25.1 2.2E+02 0.0048 30.9 7.3 24 588-616 171-194 (259)
192 cd00063 FN3 Fibronectin type 3 24.6 87 0.0019 25.6 3.4 24 594-617 55-78 (93)
193 PRK09828 putative fimbrial out 24.6 4E+02 0.0088 33.9 10.6 94 426-524 718-828 (865)
194 PRK15198 outer membrane usher 24.4 1.3E+03 0.029 29.3 15.2 104 503-612 715-824 (860)
195 PF05688 DUF824: Salmonella re 24.3 1.1E+02 0.0024 24.4 3.6 26 472-499 17-42 (47)
196 PRK15217 fimbrial outer membra 23.5 5.2E+02 0.011 32.8 11.2 107 397-524 677-800 (826)
197 PF05751 FixH: FixH; InterPro 23.0 3.5E+02 0.0075 25.9 7.7 55 560-615 71-132 (146)
198 PRK06764 hypothetical protein; 22.6 1.5E+02 0.0032 26.6 4.4 66 636-723 36-101 (105)
199 PRK15213 fimbrial outer membra 22.1 7.1E+02 0.015 31.4 12.1 103 397-523 655-774 (797)
200 PRK09619 flgD flagellar basal 20.7 4.3E+02 0.0093 27.9 8.3 52 21-72 114-172 (218)
201 PF09134 Invasin_D3: Invasin, 20.4 3.1E+02 0.0068 25.4 6.2 61 469-531 22-86 (99)
202 PRK15316 RatA-like protein; Pr 20.0 2.4E+02 0.0051 38.6 7.0 29 471-499 1596-1624(2683)
No 1
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-148 Score=1250.53 Aligned_cols=765 Identities=36% Similarity=0.610 Sum_probs=698.4
Q ss_pred CCCCCCCccceeEEeeEEEEEEEEEccCCceEEEEEecCCCcccceeeeeCCC-CcEEEEecCcceEEEEeecCCCCCCc
Q 003526 1 MVLPNMASIADIKAISYDICGVVRTVGSGNKVKVALTHGPDKVKPQVKQTDNN-GNFCFEVPPGEYRLSAMAATPESSSG 79 (813)
Q Consensus 1 ~v~p~~~~l~di~~~~~~vCG~V~~~~~~~~~~v~lt~g~~~~k~~t~~t~~~-G~Fcf~l~pG~Y~l~v~~~~~e~~~G 79 (813)
||.|||++||||+|++|+|||+|++.. ++..+.||+..++.|.+...++++ |+|||++|||.|+|+++.+++++++|
T Consensus 380 kv~pntasLpdI~a~~fdiCGqV~~~~--k~~nv~lt~~~s~~k~s~~~t~etdGsfCf~vppG~ytievl~~ta~~aag 457 (1165)
T KOG1948|consen 380 KVKPNTASLPDITAQKFDICGQVEKSE--KGVNVKLTFTRSDDKRSLEITPETDGSFCFPVPPGLYTIEVLDKTASGAAG 457 (1165)
T ss_pred EecCCccccccccccceeeeeEEEEcc--ccceeEEEEccCccccccccccccCCceeEEcCCccEEEEEeccCcccccc
Confidence 689999999999999999999998754 567788876666677766666655 99999999999999999999999999
Q ss_pred eEEeCceEEEEe-CCCccceEEEEEEeEEEEEEEeccCCCCceEEEEEEcCcccccCcceeeEEEecCCceEEEeecCCc
Q 003526 80 ILFLPPYADVVV-KSPLLNIEFSQALVNVLGNVACKERCGPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPG 158 (813)
Q Consensus 80 l~F~P~~~~v~V-~~p~~di~Fsq~~~sv~G~V~c~~~c~~~v~VtL~~~~~~~~~~~~~~~~~~t~~~g~f~F~~VlPG 158 (813)
|+|.|.+++++| +.|++||.|+|||++|+|+|+|++.|+ .++|+|+....+ +....+++.+++.++|.|+|||||
T Consensus 458 l~l~P~~~~veV~~~pv~ni~Fsqfranv~g~lsCl~tCg-~a~vtlq~la~G---q~~~~~vk~td~~~~ftF~nilPG 533 (1165)
T KOG1948|consen 458 LLLTPRLLEVEVLKNPVTNIRFSQFRANVNGHLSCLGTCG-TATVTLQLLAAG---QTLVRSVKGTDESSVFTFENILPG 533 (1165)
T ss_pred cEeeeeeeeEEeecCcccceehhhhhhccceEEEeccCCC-ceeEEEEecccC---CcceeeEEEEeeccEEEeeccCCc
Confidence 999999999999 679999999999999999999999999 789999988332 224566677899999999999999
Q ss_pred cEEEEEEeeccccccCCCCeEEEeeEEEEEeecCcccceeEEEeceEEEEEeccceeeeEeecCCCeee---eEecccce
Q 003526 159 KYRLEVKRTSREASSMEDNWCWEQSFIGVDVGTNDVKGVEFVQKGYWLNVISTHDVDAYMTQQDGSHVP---LKVKKGSQ 235 (813)
Q Consensus 159 ~Y~v~v~~~~~~~~~~~~~wcw~~~~~~V~V~~~~~~~~~f~q~Gy~v~v~ssh~~~~~~~~~~~~~~~---~~l~kG~~ 235 (813)
+|++++. ||++|||++++++++|.++|+.+++|+|+|||++|.+||+++++|+|++|.+.+ ++|.||+|
T Consensus 534 kY~~~i~--------d~~~wCwe~ss~~lnV~~~d~~aieFvqkGy~~~iisSH~a~~e~~h~dg~~en~~~lki~kgvn 605 (1165)
T KOG1948|consen 534 KYSARID--------DNGRWCWEKSSMTLNVEQSDTQAIEFVQKGYAAQIISSHPAEIEWSHADGKQENGKTLKIGKGVN 605 (1165)
T ss_pred ceEEEec--------cCCCceeecceEEEEeecccccccceeeccEEEEEEecCceeeEEecCCCCCCCcceEEecCcce
Confidence 9999998 599999999999999999999999999999999999999999999999998876 88999999
Q ss_pred eEeecCCeeeEEEeccCeeeeCCceEEEeCCCCceeEEEeEEeEEeEEEEEeccCCCccccCCcceEEEEecCCCceeec
Q 003526 236 HICVESPGVHNLHFVNPCVFFGSPVLKMDTSNPSPIYLKGEKYQLRGHINVQSRSPIGVHELPENIIVDILNGDGSISNR 315 (813)
Q Consensus 236 ~~c~~~~G~Y~~~l~~sC~~f~~~~~~~~t~~~~~i~l~~~~~~v~G~i~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~ 315 (813)
+||+++||.|.+.+ .+||.|+.++.+..+..+.+.+++++..++.|+|.++..+... ...++++.+++.+.+++.++.
T Consensus 606 ~iCv~kpGs~~~~~-~sc~tfd~sspki~v~~~~~hh~ka~i~~~k~~i~ve~~kt~~-~s~~~k~v~e~~~~k~evit~ 683 (1165)
T KOG1948|consen 606 SICVPKPGSYDVSL-GSCYTFDRSSPKITVPFDGVHHEKAVIARIKGTIDVENDKTAA-VSIREKFVVEIQDIKSEVITR 683 (1165)
T ss_pred EEEccCCccceeec-cceeecccCCceeecCCCcchHhHhhhhhhccceeeeeccccc-ccchhhhhhhhhhhcccccCc
Confidence 99999999999997 9999999999999999888999999999999999988865542 355678888888888877763
Q ss_pred ccccccCCCCCCCCceEEEEEEeccCCCeEEEEecCCCCCCceeEEEeecEEEEEEcCCCcccccceEEeeeccEEEeee
Q 003526 316 TTATLTSPANDQTSYAVYGFSLWANLGDQLTFVPRDPRGNEEKKILFYPRQRQVSVTNDGCQALIPAFSGRLGLYTEGSV 395 (813)
Q Consensus 316 ~~~~~~~~~~~~~~~~~Y~f~~~~~~Ge~~~i~P~~~~~~~~~~~lf~P~~~~v~V~~~~c~~~~~~f~~~~G~~i~G~V 395 (813)
+ ....+.| +|.+.|+|.+||++||+|+|+|.+ +.+||+|.+++++|..+ |+.+.++|.+.+|++|+|+|
T Consensus 684 ~---a~~~avD-~G~f~yey~twas~gekl~ivPss------k~lLFyP~s~eavvS~d-C~~~a~~f~g~rGLfL~Gsi 752 (1165)
T KOG1948|consen 684 E---AQVPAVD-NGRFTYEYPTWASSGEKLVIVPSS------KLLLFYPTSKEAVVSGD-CIENAVKFNGFRGLFLDGSI 752 (1165)
T ss_pred c---ccccccc-CCcceEechhhcCCCceEEEeecc------ceeeecCCceEEEEecc-cchhheeecceeeEEEccee
Confidence 2 2232333 378999999999999999999988 79999999999999987 99999999999999999999
Q ss_pred eCCCCCeEEEEEecCcchhhhcccCceeeeeEeCCCccEEeccCCCCceEEEEEeCCCeeeeecC--CcceeeeeeceEE
Q 003526 396 SPPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQVG--PNSFSCQKLSQIS 473 (813)
Q Consensus 396 ~~pl~ga~V~l~~~~~~~~~~~~~~~~~~~t~Td~~G~f~~~~L~~~g~Y~i~A~k~gy~~~~~~--~~~f~~~~l~~I~ 473 (813)
.|+|+||+|+++.++++ +..+++.|+.+|.|.+|||..+..|.++|+||||+|++.+ +++|.+.+||+|+
T Consensus 753 ~Palega~Ikis~kkds--------~~~Iev~T~~~Gafk~GPl~~dl~yd~tA~kegyvft~~~~t~~sfqa~kl~~vs 824 (1165)
T KOG1948|consen 753 KPALEGAVIKISLKKDS--------DVVIEVITNKDGAFKIGPLKRDLDYDITATKEGYVFTPTSPTPGSFQAVKLSQVS 824 (1165)
T ss_pred ccCCCCcEEEEEecCCC--------ceeEEEEEcCCCcEEecccccccccceeeccCceEEecCCCCccceeeeeeeEEE
Confidence 99999999999988765 7889999999999999999999999999999999999997 4899999999999
Q ss_pred EEEEccCCCCCCccceEEEEEcCccceeeeEecCCceEEeCccCCeeEEEEEeeccccccCCeeEEEecCCceEEEEEEE
Q 003526 474 VRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQA 553 (813)
Q Consensus 474 g~V~d~~~~g~Pl~Gv~vsLsg~~~~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~ey~f~P~s~~V~V~~G~~~~v~~~~ 553 (813)
+.|+|++ ++||+||++||+|+..||+|.+|+++|.+.|.+|.||+||++|||+||.|.|++++|+|++|++..+.|.+
T Consensus 825 v~vkdea--~q~LpgvLLSLsGg~~yRsNlvtgdng~~nf~sLsPgqyylRpmlKEykFePst~mIevkeGq~~~vvl~g 902 (1165)
T KOG1948|consen 825 VKVKDEA--TQPLPGVLLSLSGGKDYRSNLVTGDNGHKNFVSLSPGQYYLRPMLKEYKFEPSTSMIEVKEGQHENVVLKG 902 (1165)
T ss_pred EEEeccC--CCcCCcEEEEEecCcchhhccccCCCceeEEeecCcchhhhhhHHHhcCcCCCceeEEeccCceEEEEEEE
Confidence 9999986 79999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeEEEEEEEEcCCCCccCccEEEEEeCC-CceeeeeEecCceeEEEcCCCCCCeEEEEEEeecCCCCcceeccCCceE
Q 003526 554 TRVAYSATGTITLLSGQPKDGVSVEARSES-KGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESV 632 (813)
Q Consensus 554 ~r~~~sv~G~V~~~~G~p~~gv~V~a~~~~-~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~~~~~~~~~~~~~~p~~~ 632 (813)
.|++||++|+|+.++|+|..||.++|++++ ..+.++++||+||+||||||+|||.|.|.+++.. ++++|||++|+++
T Consensus 903 kRvAySayGtvssLsGdp~~gVaieA~sdn~~~y~eeattdenG~yRiRGL~Pdc~Y~V~vk~~~--~n~~iers~P~s~ 980 (1165)
T KOG1948|consen 903 KRVAYSAYGTVSSLSGDPMKGVAIEALSDNCDLYQEEATTDENGTYRIRGLLPDCEYQVHVKSYA--DNSPIERSFPRSF 980 (1165)
T ss_pred EEEEEEeeeehhhccCCcccCeEEEEecCCCCccccccccccCCcEEEeccCCCceEEEEEeecc--CCCcccccCCceE
Confidence 999999999999999999999999999987 5689999999999999999999999999999864 4788999999999
Q ss_pred EEEecCccccCceEEEeecCceEEEEEEEEccccccccccEEEEE-EecCCCCceEEEEeeCCCceEEeecCCC--ceEE
Q 003526 633 TVKVGSGDIKGLDFLVFEQPEKTILSGHVEGNRIKELNSHLLVEI-KSASDTSKVESVISLPMSNFFQVKDLPK--GKHL 709 (813)
Q Consensus 633 ~V~V~~~dv~gv~f~~~~~~~~~~vsg~V~~s~~~~~~~~l~v~l-~~~~~~~~v~~~~~l~~~~~F~~~~lp~--G~Y~ 709 (813)
+|+|+.+||+|+||++|+|++.+||+|+|.++. .++++.++|.+ ++.++++++.+ +..+. .+|.||+||+ ++|.
T Consensus 981 tv~vgneDv~glnf~af~q~kttdit~~V~~~~-ne~l~sl~vv~yKs~nddspv~s-v~~gq-l~~ffp~l~~dg~~yv 1057 (1165)
T KOG1948|consen 981 TVSVGNEDVKGLNFMAFIQAKTTDITVEVGMDT-NEELQSLRVVIYKSNNDDSPVAS-VVAGQ-LLHFFPNLPRDGVEYV 1057 (1165)
T ss_pred EEEecccccCCceEEEEeccceEEEEEEEcccc-cccccceEEEEEecCCCCCcceE-Eeccc-eeeeccccCCCCceEE
Confidence 999999999999999999999999999999887 56667777766 77778898888 44443 7899999997 4999
Q ss_pred EEEEeeCCCCceeeeeeeEEEEEEecc-eEEEeeeeEeeeeccccccCCCCcchHhHHHHHHHHHH---------HhhHH
Q 003526 710 LQLRSSLPSSTHRFESEIIEVDLEKNA-QIHVGPLRYSVEENHHKQDLTPAPVFPLIVGVSVIGLF---------ISMPR 779 (813)
Q Consensus 710 v~l~s~l~~~~~~y~~~~~~v~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~~ 779 (813)
|+|+|+++.++|+|. ++ .|.|.. .+|+ .|.|.|++|..|+|++|++++||+|+++|+++| +++|+
T Consensus 1058 V~l~Stlp~~~y~yk--lp--~fva~~~~k~a-~l~f~p~rra~eaDi~q~s~~al~l~~lvalaffnqd~~~~lLsi~s 1132 (1165)
T KOG1948|consen 1058 VRLESTLPPQAYAYK--LP--RFVADQAMKVA-RLPFTPSRRANEADISQGSFLALPLFVLVALAFFNQDRVLELLSIPS 1132 (1165)
T ss_pred EEEeccCCchheeee--cc--EEEeecceEEE-EEEeCccccccccccccCcEehhHHHHHHHHHHhchhhhhhhhcchh
Confidence 999999999999995 44 787776 8888 899999999999999999999999999999987 46888
Q ss_pred HHHHHHhhcCCCCCCcccccccccCCccccccc
Q 003526 780 LKDLYQAAMGIPTPGFIATAKKEARKPVVRKKT 812 (813)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (813)
++|++++..+.++.+.+-..||||||...||||
T Consensus 1133 ~ld~vrat~a~~sdn~t~~rk~ep~k~~~~~kt 1165 (1165)
T KOG1948|consen 1133 FLDWVRATFAPTSDNHTRKRKREPRKAVARKKT 1165 (1165)
T ss_pred HHHHHHhhccccCCCCChhhhcchhhhhhhccC
Confidence 899999999999999988889999999999986
No 2
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-65 Score=575.15 Aligned_cols=564 Identities=21% Similarity=0.237 Sum_probs=442.8
Q ss_pred EEEEEEEccC---CceEEEEE-e-cCCCcccceeeeeCCCCcEEEEec---CcceEEEEeecCCCCCCceEEeCceEEEE
Q 003526 19 ICGVVRTVGS---GNKVKVAL-T-HGPDKVKPQVKQTDNNGNFCFEVP---PGEYRLSAMAATPESSSGILFLPPYADVV 90 (813)
Q Consensus 19 vCG~V~~~~~---~~~~~v~l-t-~g~~~~k~~t~~t~~~G~Fcf~l~---pG~Y~l~v~~~~~e~~~Gl~F~P~~~~v~ 90 (813)
=||=-..... -+.++|+| | +|. +|++|+|+|+|||| |+| +|+|.|++.+| .||+|+|.+++++
T Consensus 28 gCgGfVkSd~eidyS~ievkL~Tk~G~--lKd~tdcaPsNGYf--mIPvYdKGdyiLkIspP-----~GwsfePd~Vel~ 98 (1165)
T KOG1948|consen 28 GCGGFVKSDSEIDYSQIEVKLLTKEGH--LKDETDCAPSNGYF--MIPVYDKGDYILKISPP-----AGWSFEPDSVELK 98 (1165)
T ss_pred eccceeecCCccceeeEEEEEEeeccc--cccccccCCCCceE--EEEEecCCcEEEEecCC-----CCccccCceEEEE
Confidence 4665443222 27899999 7 888 99999999999999 999 99999999999 8999999999999
Q ss_pred eC---C---CccceEEEEEEe-EEEEEEEeccC-CCCceEEEEEEcCcccccCcceeeEEEecCCceEEEeecCCccEEE
Q 003526 91 VK---S---PLLNIEFSQALV-NVLGNVACKER-CGPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRL 162 (813)
Q Consensus 91 V~---~---p~~di~Fsq~~~-sv~G~V~c~~~-c~~~v~VtL~~~~~~~~~~~~~~~~~~t~~~g~f~F~~VlPG~Y~v 162 (813)
|| + -..||||. |+| +|+|+|...+. +++||.|+|+... ..+..++|+++|+|.|.|++||+|+|
T Consensus 99 vDGktd~Cs~n~DinFh-ftGFsv~GkVlgaaggGpagV~velrs~e-------~~iast~T~~~Gky~f~~iiPG~Yev 170 (1165)
T KOG1948|consen 99 VDGKTDACSLNEDINFH-FTGFSVRGKVLGAAGGGPAGVLVELRSQE-------DPIASTKTEDGGKYEFRNIIPGKYEV 170 (1165)
T ss_pred eccccccccCCCceEEE-EeeeeEeeEEeeccCCCcccceeeccccc-------CcceeeEecCCCeEEEEecCCCceEE
Confidence 96 2 38999999 999 99999998876 7789999998763 35788899999999999999999999
Q ss_pred EEEeeccccccCCCCeEEEeeEEEEEeecCc-c-cceeEEEeceEEEEEeccceeeeEeecCCCeeeeEecccceeEeec
Q 003526 163 EVKRTSREASSMEDNWCWEQSFIGVDVGTND-V-KGVEFVQKGYWLNVISTHDVDAYMTQQDGSHVPLKVKKGSQHICVE 240 (813)
Q Consensus 163 ~v~~~~~~~~~~~~~wcw~~~~~~V~V~~~~-~-~~~~f~q~Gy~v~v~ssh~~~~~~~~~~~~~~~~~l~kG~~~~c~~ 240 (813)
+++ |+.|.++....++.+...+ . .+..|+.+||++..+.. .++.+ ..|+-
T Consensus 171 ~as---------hp~w~~~~ag~tvvev~~a~~~va~~f~VsGydl~gsv~---------s~s~P-----~~gv~----- 222 (1165)
T KOG1948|consen 171 SAS---------HPAWECISAGKTVVEVKNAPVVVAPNFKVSGYDLEGSVR---------SESMP-----FVGVV----- 222 (1165)
T ss_pred ecc---------CcceeEeecCcEEEEeCCCccccCCceEEEeeeeEEEEe---------ccCCc-----ccceE-----
Confidence 999 8999999888877766554 3 37899999999984432 22445 35554
Q ss_pred CCeeeEEEeccCeeeeCCceEEEeCCCCceeEEEeEEeEEeEEEEEeccCCCccccCCcceEEEEecCCCceeecccccc
Q 003526 241 SPGVHNLHFVNPCVFFGSPVLKMDTSNPSPIYLKGEKYQLRGHINVQSRSPIGVHELPENIIVDILNGDGSISNRTTATL 320 (813)
Q Consensus 241 ~~G~Y~~~l~~sC~~f~~~~~~~~t~~~~~i~l~~~~~~v~G~i~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~ 320 (813)
+.| |.++..+...++|+-.... .. ..+++. ..+
T Consensus 223 ------~~l-------------~s~~v~~~dvpkc~gs~ap-----------------~n------~~a~e~-----vsl 255 (1165)
T KOG1948|consen 223 ------MTL-------------YSTSVIDLDVPKCVGSEAP-----------------LN------VPATEN-----VSL 255 (1165)
T ss_pred ------EEE-------------EEcccccccCCccccCCCC-----------------CC------CCcccc-----eee
Confidence 445 5555444444555421110 01 111222 347
Q ss_pred cCCCCCCCCceEEEEEEe-ccCCCeEEEEecCCCCCCceeEEEeecEEEEEEcCCCcccccceEEeeeccEEEeeeeC--
Q 003526 321 TSPANDQTSYAVYGFSLW-ANLGDQLTFVPRDPRGNEEKKILFYPRQRQVSVTNDGCQALIPAFSGRLGLYTEGSVSP-- 397 (813)
Q Consensus 321 ~~~~~~~~~~~~Y~f~~~-~~~Ge~~~i~P~~~~~~~~~~~lf~P~~~~v~V~~~~c~~~~~~f~~~~G~~i~G~V~~-- 397 (813)
|..++|.+| +|+|. +|.| +|.++|.+ .++.+.|++.|..++|+|.+|..+ ....|+ .+||.++|||+.
T Consensus 256 c~~vsd~~G----~fsfksvPsG-kY~l~a~y--~ge~~~fdvSP~~l~v~Vehd~lq-i~~ef~-vtgfSvtGRVl~g~ 326 (1165)
T KOG1948|consen 256 CIGVSDPRG----RFSFKSVPSG-KYYLAASY--VGEPKSFDVSPNPLKVVVEHDHLQ-IASEFR-VTGFSVTGRVLVGS 326 (1165)
T ss_pred EEEEEcCCc----eEEEEEcCCC-CEEEEEEe--cCCceEEEeCCCceeEEEecccee-ccceeE-EEEEEeeeeEEeCC
Confidence 888888888 78877 9999 88999998 888999999999999999999887 466776 799999999983
Q ss_pred ---CCCCeEEEEEecCcchhhhcccCceeeeeEeCCCccEEeccCCCCceEEEEEeCCCeeeeecC----C-------cc
Q 003526 398 ---PLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQVG----P-------NS 463 (813)
Q Consensus 398 ---pl~ga~V~l~~~~~~~~~~~~~~~~~~~t~Td~~G~f~~~~L~~~g~Y~i~A~k~gy~~~~~~----~-------~~ 463 (813)
|++||.|.++++ ....||++|.|+++++..+|+|+|+|.|++|.|+... + +.
T Consensus 327 ~g~~l~gvvvlvngk--------------~~~kTdaqGyykLen~~t~gtytI~a~kehlqFstv~~kv~pntasLpdI~ 392 (1165)
T KOG1948|consen 327 KGLPLSGVVVLVNGK--------------SGGKTDAQGYYKLENLKTDGTYTITAKKEHLQFSTVHAKVKPNTASLPDIT 392 (1165)
T ss_pred CCCCccceEEEEcCc--------------ccceEcccceEEeeeeeccCcEEEEEeccceeeeeEEEEecCCcccccccc
Confidence 799999999876 5679999999999996667999999999999999763 1 45
Q ss_pred eeeeeeceEEEEEEccCCCCCCccceEEEEEcCccceeeeEecCC-ceEEeCccCCeeEEEEEeecc------ccccCCe
Q 003526 464 FSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAG-GSFHFDNLFPGNFYLRPLLKE------YAFSPPA 536 (813)
Q Consensus 464 f~~~~l~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~~~r~~~~Td~~-G~f~f~~L~PG~Y~v~~~~~e------y~f~P~s 536 (813)
...+..|+ .+++. +....+.+..+..++. ++..+|++. |.||| .++||.|++.++.++ ..|.|..
T Consensus 393 a~~fdiCG-qV~~~-----~k~~nv~lt~~~s~~k-~s~~~t~etdGsfCf-~vppG~ytievl~~ta~~aagl~l~P~~ 464 (1165)
T KOG1948|consen 393 AQKFDICG-QVEKS-----EKGVNVKLTFTRSDDK-RSLEITPETDGSFCF-PVPPGLYTIEVLDKTASGAAGLLLTPRL 464 (1165)
T ss_pred ccceeeee-EEEEc-----cccceeEEEEccCccc-cccccccccCCceeE-EcCCccEEEEEeccCcccccccEeeeee
Confidence 55677777 34443 2223333333323322 444455554 99999 899999999998654 6699999
Q ss_pred eEEEecCCceEEEEEEEEEeeEEEEEEEEcCCCCccCccEEEEEeCC-CceeeeeEecCceeEEEcCCCCCCeEEEEEEe
Q 003526 537 QAIELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEARSES-KGYYEETVTDTSGSYRLRGLHPDTTYVIKVVK 615 (813)
Q Consensus 537 ~~V~V~~G~~~~v~~~~~r~~~sv~G~V~~~~G~p~~gv~V~a~~~~-~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~ 615 (813)
+.++|.+.++++|.|++.|+. +.|.|+|+.-|+-+-+++++...+ ........||+.+.|.|++++|| +|.+++..
T Consensus 465 ~~veV~~~pv~ni~Fsqfran--v~g~lsCl~tCg~a~vtlq~la~Gq~~~~~vk~td~~~~ftF~nilPG-kY~~~i~d 541 (1165)
T KOG1948|consen 465 LEVEVLKNPVTNIRFSQFRAN--VNGHLSCLGTCGTATVTLQLLAAGQTLVRSVKGTDESSVFTFENILPG-KYSARIDD 541 (1165)
T ss_pred eeEEeecCcccceehhhhhhc--cceEEEeccCCCceeEEEEecccCCcceeeEEEEeeccEEEeeccCCc-ceEEEecc
Confidence 999999999999999999986 999999999999999999988433 23556788999999999999999 69999985
Q ss_pred ecCCCCcceeccCCceEEEEecCccccCceEEEeecCceEEEEEEEEccccccccccEEEEEEecCCCCceEEEEeeCCC
Q 003526 616 KDGFGSTKIERASPESVTVKVGSGDIKGLDFLVFEQPEKTILSGHVEGNRIKELNSHLLVEIKSASDTSKVESVISLPMS 695 (813)
Q Consensus 616 ~~~~~~~~~~~~~p~~~~V~V~~~dv~gv~f~~~~~~~~~~vsg~V~~s~~~~~~~~l~v~l~~~~~~~~v~~~~~l~~~ 695 (813)
.+.| +|--.+++++|..+|+.+++|+ | ++|.+++.. +| .+.+++.+.+........+++.++
T Consensus 542 ~~~w------Cwe~ss~~lnV~~~d~~aieFv---q-kGy~~~iis--SH------~a~~e~~h~dg~~en~~~lki~kg 603 (1165)
T KOG1948|consen 542 NGRW------CWEKSSMTLNVEQSDTQAIEFV---Q-KGYAAQIIS--SH------PAEIEWSHADGKQENGKTLKIGKG 603 (1165)
T ss_pred CCCc------eeecceEEEEeeccccccccee---e-ccEEEEEEe--cC------ceeeEEecCCCCCCCcceEEecCc
Confidence 4555 1112379999999999999998 5 999999888 87 788999887654433334888888
Q ss_pred c-eEEeecCCCceEEEEEEeeCCCCceeeeeeeEEEEEE
Q 003526 696 N-FFQVKDLPKGKHLLQLRSSLPSSTHRFESEIIEVDLE 733 (813)
Q Consensus 696 ~-~F~~~~lp~G~Y~v~l~s~l~~~~~~y~~~~~~v~~~ 733 (813)
. .||++ .+|+|.+.++|| |+|+...+...+.
T Consensus 604 vn~iCv~--kpGs~~~~~~sc-----~tfd~sspki~v~ 635 (1165)
T KOG1948|consen 604 VNSICVP--KPGSYDVSLGSC-----YTFDRSSPKITVP 635 (1165)
T ss_pred ceEEEcc--CCccceeeccce-----eecccCCceeecC
Confidence 7 79995 459999999998 5566555555443
No 3
>COG4932 Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=99.44 E-value=1.1e-10 Score=139.80 Aligned_cols=285 Identities=18% Similarity=0.228 Sum_probs=182.0
Q ss_pred CceEEEEE-EeccCCCeEEEEecCCCCCCceeEEEeecEEEEEEcCCCcccccceEEeeeccEEEeeee----CCCCCeE
Q 003526 329 SYAVYGFS-LWANLGDQLTFVPRDPRGNEEKKILFYPRQRQVSVTNDGCQALIPAFSGRLGLYTEGSVS----PPLSGVN 403 (813)
Q Consensus 329 ~~~~Y~f~-~~~~~Ge~~~i~P~~~~~~~~~~~lf~P~~~~v~V~~~~c~~~~~~f~~~~G~~i~G~V~----~pl~ga~ 403 (813)
.+|-|+|. ..||.||+|--.|..+ .+.+.- ...+.|.... ++.+|-.-==++. .+|+||+
T Consensus 1111 aPGDYqfVEtkAPtGY~LdatPV~F------tI~eeq-~e~~~vtKeN--------~~~~GsvqLtK~Ds~t~a~LaGA~ 1175 (1531)
T COG4932 1111 APGDYQFVETKAPTGYILDATPVNF------TISEEQ-DEAAKVTKEN--------TLKPGSVQLTKVDSATKATLAGAE 1175 (1531)
T ss_pred cCCceeeEEecCCceeEecCcccee------EeeccC-CceeEEeecc--------cccccceEEEEecccccccccCcE
Confidence 36789998 6699999888888753 333222 2223332211 1223322111222 3599999
Q ss_pred EEEEecCcchhhhcccCceeeeeEeCCCccEEeccCCCCceEEEEE--eCCCeeeeecC-C--cceeee-----------
Q 003526 404 IRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEA--SKPGYYLRQVG-P--NSFSCQ----------- 467 (813)
Q Consensus 404 V~l~~~~~~~~~~~~~~~~~~~t~Td~~G~f~~~~L~~~g~Y~i~A--~k~gy~~~~~~-~--~~f~~~----------- 467 (813)
.+|...++. -...-.+||++|.-.+..|.| |+|+..- ...||.+.... + +.|...
T Consensus 1176 Fel~d~dG~--------~VqegLtTD~nG~i~VtdL~P-GdYqFVETkAP~GY~LdatP~~FtI~~~q~ev~~V~~en~~ 1246 (1531)
T COG4932 1176 FELQDEDGT--------LVQEGLTTDENGKINVTDLAP-GDYQFVETKAPTGYILDATPTPFTIEFNQEEVVKVVKENTA 1246 (1531)
T ss_pred EEEEcCCCc--------EeeccceecCCCcEEecccCC-cceeeeeecCCcceeeccccceeEEeccccceeEEeecccc
Confidence 999877654 234557999999999999998 7997743 34699988652 1 222111
Q ss_pred eeceEEEEEEccCCCCCCccceEEEEEcCcc--ceeeeEecCCceEEeCccCCeeEEEEEeecc--ccc--cCCeeEEEe
Q 003526 468 KLSQISVRIYSKDDAGEPIPSVLLSLSGDDG--YRNNSVSWAGGSFHFDNLFPGNFYLRPLLKE--YAF--SPPAQAIEL 541 (813)
Q Consensus 468 ~l~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~~--~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~e--y~f--~P~s~~V~V 541 (813)
..+.+...-.|. .++.-|+||.++|...++ .+.+.+||+.|.....+|.||+|.+...+.. |.. .|-...|+-
T Consensus 1247 ~pgsv~L~k~d~-~~~~~l~~a~fkl~~~eg~~vqe~L~td~~Gei~v~dlkpGdyqfVETkAp~Gy~L~a~pv~ftI~~ 1325 (1531)
T COG4932 1247 IPGSVVLTKKDS-DTGAALSGAEFKLLDAEGTTVQEGLTTDETGEIVVADLKPGDYQFVETKAPEGYILDATPVNFTIEF 1325 (1531)
T ss_pred CCCCceeeccCC-CcccccCCCceeeecCCCcEeccCceecCCCcEEecccCCCcccceEccCCcceEEeecceeEEEEe
Confidence 122222223333 357789999999987654 3567899999999999999999988655433 332 455555554
Q ss_pred cCCceEEEEEEEEE-eeEEEEEEEEcCCCCccCccEEEEEeCCCc-eeeeeEecCceeEEEcCCCCCCeEEEEEEeecCC
Q 003526 542 GSGESREVIFQATR-VAYSATGTITLLSGQPKDGVSVEARSESKG-YYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGF 619 (813)
Q Consensus 542 ~~G~~~~v~~~~~r-~~~sv~G~V~~~~G~p~~gv~V~a~~~~~~-~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~~~~~ 619 (813)
...+...|...-.. .++-+.-++-...+..++||..++....+. ..+.-+||++|+-.+.+|.||.|-.|+.++|.+
T Consensus 1326 ~q~e~~kV~~~n~~~~gsv~l~k~d~~~~~~LegA~F~l~de~g~ilke~l~t~~nG~l~v~dLaPGdYqfvETkAPtg- 1404 (1531)
T COG4932 1326 NQEEAVKVTKENDAKTGSVVLTKLDSSSGVTLEGAEFELLDEEGNILKEGLVTDENGQLLVDDLAPGDYQFVETKAPTG- 1404 (1531)
T ss_pred cccccEEEEEeeccccccEEEEEeecccCccccCcEEEEEcccCceehhcceeCCCCcEEEeecCCCceeeEEccCCcc-
Confidence 44333333332211 111122233345688999999999987654 667789999999999999999755677787653
Q ss_pred CCcceeccCCceEEEEecCcccc
Q 003526 620 GSTKIERASPESVTVKVGSGDIK 642 (813)
Q Consensus 620 ~~~~~~~~~p~~~~V~V~~~dv~ 642 (813)
++-.+.|-.++|+-+.++..
T Consensus 1405 ---Y~Ld~tpv~FTIe~~q~e~~ 1424 (1531)
T COG4932 1405 ---YELDATPVDFTIEFNQEEAL 1424 (1531)
T ss_pred ---eeccCCceEEEEEcCcccce
Confidence 34445677777776655443
No 4
>COG4932 Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=99.35 E-value=1.4e-10 Score=138.86 Aligned_cols=309 Identities=16% Similarity=0.235 Sum_probs=201.9
Q ss_pred CCCCeEEEEEecCcchhhhcccCceeeeeEeCCCccEEeccCCCCceEEEEEe--CCCeeeeecCCccee----------
Q 003526 398 PLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEAS--KPGYYLRQVGPNSFS---------- 465 (813)
Q Consensus 398 pl~ga~V~l~~~~~~~~~~~~~~~~~~~t~Td~~G~f~~~~L~~~g~Y~i~A~--k~gy~~~~~~~~~f~---------- 465 (813)
.|+||..+|..+.+. .......||++|.-.+..|.| |.|+..-. ..||.+.... ..|.
T Consensus 1077 ~LaGA~FeLQdk~G~--------~l~enL~TD~~G~v~itdLaP-GDYqfVEtkAPtGY~LdatP-V~FtI~eeq~e~~~ 1146 (1531)
T COG4932 1077 TLAGAEFELQDKDGN--------TLQENLTTDEDGKVEITDLAP-GDYQFVETKAPTGYILDATP-VNFTISEEQDEAAK 1146 (1531)
T ss_pred cccCceEEEeeccCc--------chhhhccccccCcEEeccccC-CceeeEEecCCceeEecCcc-ceeEeeccCCceeE
Confidence 599999999887653 333447999999999999997 79976333 3599988542 2221
Q ss_pred -----eeeeceEEEEEEccCCCCCCccceEEEEEcCcc--ceeeeEecCCceEEeCccCCeeEEEEEee--ccccc--cC
Q 003526 466 -----CQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDG--YRNNSVSWAGGSFHFDNLFPGNFYLRPLL--KEYAF--SP 534 (813)
Q Consensus 466 -----~~~l~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~~--~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~--~ey~f--~P 534 (813)
..+.|.++..-+|.+ .+++|+||.+.|..+|+ .+.+.+||++|.....+|.||+|.+.... .+|.. .|
T Consensus 1147 vtKeN~~~~GsvqLtK~Ds~-t~a~LaGA~Fel~d~dG~~VqegLtTD~nG~i~VtdL~PGdYqFVETkAP~GY~LdatP 1225 (1531)
T COG4932 1147 VTKENTLKPGSVQLTKVDSA-TKATLAGAEFELQDEDGTLVQEGLTTDENGKINVTDLAPGDYQFVETKAPTGYILDATP 1225 (1531)
T ss_pred EeecccccccceEEEEeccc-ccccccCcEEEEEcCCCcEeeccceecCCCcEEecccCCcceeeeeecCCcceeecccc
Confidence 113456666667774 69999999999998876 35678999999999999999999887654 34654 34
Q ss_pred CeeEEEecCCceEEEEEEEEEeeEEEEEEEE----c-CCCCccCccEEEEEeCCCc-eeeeeEecCceeEEEcCCCCCCe
Q 003526 535 PAQAIELGSGESREVIFQATRVAYSATGTIT----L-LSGQPKDGVSVEARSESKG-YYEETVTDTSGSYRLRGLHPDTT 608 (813)
Q Consensus 535 ~s~~V~V~~G~~~~v~~~~~r~~~sv~G~V~----~-~~G~p~~gv~V~a~~~~~~-~~~~a~TD~~G~fr~~gL~PG~~ 608 (813)
...+|+-...++..|.-.- . .+-|+|. | ..+..+++|..++....+. ..+.-+||+.|.....+|.||.+
T Consensus 1226 ~~FtI~~~q~ev~~V~~en--~--~~pgsv~L~k~d~~~~~~l~~a~fkl~~~eg~~vqe~L~td~~Gei~v~dlkpGdy 1301 (1531)
T COG4932 1226 TPFTIEFNQEEVVKVVKEN--T--AIPGSVVLTKKDSDTGAALSGAEFKLLDAEGTTVQEGLTTDETGEIVVADLKPGDY 1301 (1531)
T ss_pred ceeEEeccccceeEEeecc--c--cCCCCceeeccCCCcccccCCCceeeecCCCcEeccCceecCCCcEEecccCCCcc
Confidence 4444444333333333222 1 1446654 3 4678899999999876644 66779999999999999999974
Q ss_pred EEEEEEeecCCCCcceeccCCceEEEEecCccccCceEEEeec-CceEEEEEEEEccccccccccEEEEEEecCCCCceE
Q 003526 609 YVIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGLDFLVFEQ-PEKTILSGHVEGNRIKELNSHLLVEIKSASDTSKVE 687 (813)
Q Consensus 609 Y~V~v~~~~~~~~~~~~~~~p~~~~V~V~~~dv~gv~f~~~~~-~~~~~vsg~V~~s~~~~~~~~l~v~l~~~~~~~~v~ 687 (813)
-.|+.+++.+ ++-.++|-.++|+-..+...-|-. ... ..++.+...+..+. .-.+..+..+|... ....+.
T Consensus 1302 qfVETkAp~G----y~L~a~pv~ftI~~~q~e~~kV~~--~n~~~~gsv~l~k~d~~~-~~~LegA~F~l~de-~g~ilk 1373 (1531)
T COG4932 1302 QFVETKAPEG----YILDATPVNFTIEFNQEEAVKVTK--ENDAKTGSVVLTKLDSSS-GVTLEGAEFELLDE-EGNILK 1373 (1531)
T ss_pred cceEccCCcc----eEEeecceeEEEEecccccEEEEE--eeccccccEEEEEeeccc-CccccCcEEEEEcc-cCceeh
Confidence 4567777653 456677888877665444333221 111 12333444444332 12223444444332 223333
Q ss_pred EEEeeCCCceEEeecCCCceEEEEEEeeCCCCceeeeeeeEEEEEE
Q 003526 688 SVISLPMSNFFQVKDLPKGKHLLQLRSSLPSSTHRFESEIIEVDLE 733 (813)
Q Consensus 688 ~~~~l~~~~~F~~~~lp~G~Y~v~l~s~l~~~~~~y~~~~~~v~~~ 733 (813)
..+..+..|...+-+|.||.|.+-=.. ..-.|+.+..+|+|+
T Consensus 1374 e~l~t~~nG~l~v~dLaPGdYqfvETk----APtgY~Ld~tpv~FT 1415 (1531)
T COG4932 1374 EGLVTDENGQLLVDDLAPGDYQFVETK----APTGYELDATPVDFT 1415 (1531)
T ss_pred hcceeCCCCcEEEeecCCCceeeEEcc----CCcceeccCCceEEE
Confidence 336678888999999999999885432 122355556666665
No 5
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=98.90 E-value=6.3e-09 Score=91.04 Aligned_cols=79 Identities=27% Similarity=0.509 Sum_probs=59.1
Q ss_pred eEEEEEEccCCCCCCccceEEEEEcCc-cceeeeEecCCceEEeCccCCeeEEEEEeeccccccCCee-EEEecCCceEE
Q 003526 471 QISVRIYSKDDAGEPIPSVLLSLSGDD-GYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQ-AIELGSGESRE 548 (813)
Q Consensus 471 ~I~g~V~d~~~~g~Pl~Gv~vsLsg~~-~~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~ey~f~P~s~-~V~V~~G~~~~ 548 (813)
.|+|+|.|.+ |+||+||.|.|...+ +....+.||++|.|.|.+|+||.|.|++...+|. +..+ .|.|..|+...
T Consensus 1 tI~G~V~d~~--g~pv~~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g~~--~~~~~~v~v~~~~~~~ 76 (82)
T PF13620_consen 1 TISGTVTDAT--GQPVPGATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPGYQ--PQTQENVTVTAGQTTT 76 (82)
T ss_dssp -EEEEEEETT--SCBHTT-EEEET--TTTECCEEE--TTSEEEEEEE-SEEEEEEEEBTTEE---EEEEEEEESSSSEEE
T ss_pred CEEEEEEcCC--CCCcCCEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeEEEEEEECCcc--eEEEEEEEEeCCCEEE
Confidence 4789999984 999999999998432 3456689999999999999999999999988765 6676 69999998888
Q ss_pred EEEEE
Q 003526 549 VIFQA 553 (813)
Q Consensus 549 v~~~~ 553 (813)
++|.+
T Consensus 77 ~~i~L 81 (82)
T PF13620_consen 77 VDITL 81 (82)
T ss_dssp --EEE
T ss_pred EEEEE
Confidence 88765
No 6
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=98.89 E-value=3.5e-09 Score=92.68 Aligned_cols=79 Identities=30% Similarity=0.537 Sum_probs=56.9
Q ss_pred EEEEEEEcCCCCccCccEEEEEeCCCceeeeeEecCceeEEEcCCCCCCeEEEEEEeecCCCCcceeccCCceE-EEEec
Q 003526 559 SATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESV-TVKVG 637 (813)
Q Consensus 559 sv~G~V~~~~G~p~~gv~V~a~~~~~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~~~~~~~~~~~~~~p~~~-~V~V~ 637 (813)
+|+|+|+|.+|+|+++|.|.+....+.....+.||++|+|+|.+|.|| .|+|.+.+++ . .+... .|.+.
T Consensus 1 tI~G~V~d~~g~pv~~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g-~Y~l~v~~~g---~------~~~~~~~v~v~ 70 (82)
T PF13620_consen 1 TISGTVTDATGQPVPGATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPG-TYTLRVSAPG---Y------QPQTQENVTVT 70 (82)
T ss_dssp -EEEEEEETTSCBHTT-EEEET--TTTECCEEE--TTSEEEEEEE-SE-EEEEEEEBTT---E------E-EEEEEEEES
T ss_pred CEEEEEEcCCCCCcCCEEEEEEEeeCCCEEEEEECCCceEEEEccCCE-eEEEEEEECC---c------ceEEEEEEEEe
Confidence 589999999999999999999876666778899999999999999999 6999998752 1 12344 57777
Q ss_pred CccccCceEE
Q 003526 638 SGDIKGLDFL 647 (813)
Q Consensus 638 ~~dv~gv~f~ 647 (813)
..+...++|.
T Consensus 71 ~~~~~~~~i~ 80 (82)
T PF13620_consen 71 AGQTTTVDIT 80 (82)
T ss_dssp SSSEEE--EE
T ss_pred CCCEEEEEEE
Confidence 6666677765
No 7
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=98.20 E-value=1.1e-05 Score=71.60 Aligned_cols=77 Identities=22% Similarity=0.389 Sum_probs=60.5
Q ss_pred eEEEEEEccCCCCCCccceEEEEEcCccceeeeEecCCceEEeCccCCeeEEEEEeeccccccCCeeEEEecCCceEEEE
Q 003526 471 QISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVI 550 (813)
Q Consensus 471 ~I~g~V~d~~~~g~Pl~Gv~vsLsg~~~~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~ey~f~P~s~~V~V~~G~~~~v~ 550 (813)
.|+|.|.|++ +++||++|.|.+.+.. ..+.||++|.|.|. +++|.|.|...+.+|. +....+.+..+....+.
T Consensus 1 ti~G~V~d~~-t~~pl~~a~V~~~~~~---~~~~Td~~G~F~i~-~~~g~~~l~is~~Gy~--~~~~~i~~~~~~~~~~~ 73 (88)
T PF13715_consen 1 TISGKVVDSD-TGEPLPGATVYLKNTK---KGTVTDENGRFSIK-LPEGDYTLKISYIGYE--TKTITISVNSNKNTNLN 73 (88)
T ss_pred CEEEEEEECC-CCCCccCeEEEEeCCc---ceEEECCCeEEEEE-EcCCCeEEEEEEeCEE--EEEEEEEecCCCEEEEE
Confidence 3789999984 5999999999998774 45789999999997 9999999999988876 45566666665444455
Q ss_pred EEEE
Q 003526 551 FQAT 554 (813)
Q Consensus 551 ~~~~ 554 (813)
+.+.
T Consensus 74 i~L~ 77 (88)
T PF13715_consen 74 IYLE 77 (88)
T ss_pred EEEe
Confidence 5443
No 8
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=98.11 E-value=1.1e-05 Score=90.61 Aligned_cols=85 Identities=19% Similarity=0.329 Sum_probs=70.7
Q ss_pred eeeeeeceEEEEEEccCCCCCCccceEEEEEcCccceeeeEecCCceEEeCccCCeeEEEEEeeccccccCCeeEEEecC
Q 003526 464 FSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGS 543 (813)
Q Consensus 464 f~~~~l~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~~~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~ey~f~P~s~~V~V~~ 543 (813)
|-.+-..+|.|.|+|+. +|+||+||.|++.|.+ ..++||.+|.|.+ .|+||+|.|++...+|. +..+.|.|.+
T Consensus 291 ~~~~~~~gI~G~V~D~~-~g~pl~~AtV~V~g~~---~~~~Td~~G~f~~-~l~pG~ytl~vs~~GY~--~~~~~v~V~~ 363 (375)
T cd03863 291 FMKQVHRGVRGFVLDAT-DGRGILNATISVADIN---HPVTTYKDGDYWR-LLVPGTYKVTASARGYD--PVTKTVEVDS 363 (375)
T ss_pred HHHHhcCeEEEEEEeCC-CCCCCCCeEEEEecCc---CceEECCCccEEE-ccCCeeEEEEEEEcCcc--cEEEEEEEcC
Confidence 33344568999999974 5999999999998763 3578999999999 79999999999988865 7788899999
Q ss_pred CceEEEEEEEEE
Q 003526 544 GESREVIFQATR 555 (813)
Q Consensus 544 G~~~~v~~~~~r 555 (813)
++.+.++|.+.|
T Consensus 364 ~~~~~~~~~L~~ 375 (375)
T cd03863 364 KGAVQVNFTLSR 375 (375)
T ss_pred CCcEEEEEEecC
Confidence 998888887653
No 9
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=97.87 E-value=5e-05 Score=85.89 Aligned_cols=103 Identities=19% Similarity=0.284 Sum_probs=76.7
Q ss_pred ceEEEEEeCCCeeeeecC--C----------cceeeeeeceEEEEEEccCCCCCCccceEEEEEcCccceeeeEecCCce
Q 003526 443 ITYNVEASKPGYYLRQVG--P----------NSFSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGS 510 (813)
Q Consensus 443 g~Y~i~A~k~gy~~~~~~--~----------~~f~~~~l~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~~~r~~~~Td~~G~ 510 (813)
.-|.|+.+..=-++.+.. + +.|-.+-..+|.|.|+|.+ |+||+||.|++.+.. ..++||.+|.
T Consensus 277 nc~e~t~el~c~k~p~~~~l~~~w~~n~~all~~~~~~~~gI~G~V~D~~--g~pi~~A~V~v~g~~---~~~~T~~~G~ 351 (392)
T cd03864 277 NCFEITLELSCDKFPPEEELEREWLGNREALISYIEQVHQGIKGMVTDEN--NNGIANAVISVSGIS---HDVTSGTLGD 351 (392)
T ss_pred CeeEEEEeccccCCCCHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCC--CCccCCeEEEEECCc---cceEECCCCc
Confidence 356666665444444332 1 2233333458999999975 899999999998763 3478999999
Q ss_pred EEeCccCCeeEEEEEeeccccccCCeeEEEecCCceEEEEEEE
Q 003526 511 FHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQA 553 (813)
Q Consensus 511 f~f~~L~PG~Y~v~~~~~ey~f~P~s~~V~V~~G~~~~v~~~~ 553 (813)
| +..|+||.|.|++...+|. +..+.|+|..++...++|.+
T Consensus 352 y-~r~l~pG~Y~l~vs~~Gy~--~~t~~v~V~~~~~~~~df~L 391 (392)
T cd03864 352 Y-FRLLLPGTYTVTASAPGYQ--PSTVTVTVGPAEATLVNFQL 391 (392)
T ss_pred E-EecCCCeeEEEEEEEcCce--eEEEEEEEcCCCcEEEeeEe
Confidence 9 8899999999999988765 77888999988877777654
No 10
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=97.86 E-value=5.6e-05 Score=85.49 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=77.6
Q ss_pred ceEEEEEeCCCeeeeecC--C----------cceeeeeeceEEEEEEccCCCCCCccceEEEEEcCccceeeeEecCCce
Q 003526 443 ITYNVEASKPGYYLRQVG--P----------NSFSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGS 510 (813)
Q Consensus 443 g~Y~i~A~k~gy~~~~~~--~----------~~f~~~~l~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~~~r~~~~Td~~G~ 510 (813)
.-+.|+.+..=.++.+.. + +.|-.+-.-+|.|.|+|.. |+||+||.|++.|.+ ..++||.+|.
T Consensus 287 nc~eiT~El~c~K~P~~~~L~~~W~~n~~all~~~~q~~~gI~G~V~D~~--g~pI~~AtV~V~g~~---~~~~T~~~G~ 361 (402)
T cd03865 287 NCFEITVELSCDKFPPEETLKQYWEDNKNSLVNYIEQVHRGVKGFVKDLQ--GNPIANATISVEGID---HDITSAKDGD 361 (402)
T ss_pred CceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHhccceEEEEECCC--CCcCCCeEEEEEcCc---cccEECCCee
Confidence 355666665444444332 1 2333333446999999974 899999999998763 3468999999
Q ss_pred EEeCccCCeeEEEEEeeccccccCCeeEEEecCCceEEEEEEE
Q 003526 511 FHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQA 553 (813)
Q Consensus 511 f~f~~L~PG~Y~v~~~~~ey~f~P~s~~V~V~~G~~~~v~~~~ 553 (813)
|.+ .|+||+|.|++...+|. +..+.|+|..++.+.++|.+
T Consensus 362 Y~~-~L~pG~Ytv~vsa~Gy~--~~~~~V~V~~~~~~~vdf~L 401 (402)
T cd03865 362 YWR-LLAPGNYKLTASAPGYL--AVVKKVAVPYSPAVRVDFEL 401 (402)
T ss_pred EEE-CCCCEEEEEEEEecCcc--cEEEEEEEcCCCcEEEeEEe
Confidence 999 99999999999998865 66788999999888888764
No 11
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=97.85 E-value=6.4e-05 Score=84.36 Aligned_cols=78 Identities=21% Similarity=0.347 Sum_probs=66.1
Q ss_pred eeeceEEEEEEccCCCCCCccceEEEEEcCccceeeeEecCCceEEeCccCCeeEEEEEeeccccccCCeeEEEecCCce
Q 003526 467 QKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGES 546 (813)
Q Consensus 467 ~~l~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~~~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~ey~f~P~s~~V~V~~G~~ 546 (813)
+-.-+|+|.|+|.. |+||+||.|.+.+.. .++||.+|.|.+. |+||.|.|++...+|. +..+.|.|..++.
T Consensus 284 ~~~~gI~G~V~d~~--g~pi~~A~V~v~g~~----~~~T~~~G~y~~~-L~pG~y~v~vs~~Gy~--~~~~~V~v~~~~~ 354 (363)
T cd06245 284 EAHKGVHGVVTDKA--GKPISGATIVLNGGH----RVYTKEGGYFHVL-LAPGQHNINVIAEGYQ--QEHLPVVVSHDEA 354 (363)
T ss_pred HcCcEEEEEEEcCC--CCCccceEEEEeCCC----ceEeCCCcEEEEe-cCCceEEEEEEEeCce--eEEEEEEEcCCCe
Confidence 34567999999974 999999999998752 4689999999995 9999999999988865 6788899998888
Q ss_pred EEEEEEE
Q 003526 547 REVIFQA 553 (813)
Q Consensus 547 ~~v~~~~ 553 (813)
..++|.+
T Consensus 355 ~~~~f~L 361 (363)
T cd06245 355 SSVKIVL 361 (363)
T ss_pred EEEEEEe
Confidence 8887765
No 12
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=97.77 E-value=0.00017 Score=64.00 Aligned_cols=51 Identities=25% Similarity=0.488 Sum_probs=45.7
Q ss_pred EEEEEEcCC-CCccCccEEEEEeCCCceeeeeEecCceeEEEcCCCCCCeEEEEEEee
Q 003526 560 ATGTITLLS-GQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKK 616 (813)
Q Consensus 560 v~G~V~~~~-G~p~~gv~V~a~~~~~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~~ 616 (813)
+.|+|.|.. |+|+++|.|.+.+.. ..+.||++|+|+|. +.+| .|++.+.+.
T Consensus 2 i~G~V~d~~t~~pl~~a~V~~~~~~----~~~~Td~~G~F~i~-~~~g-~~~l~is~~ 53 (88)
T PF13715_consen 2 ISGKVVDSDTGEPLPGATVYLKNTK----KGTVTDENGRFSIK-LPEG-DYTLKISYI 53 (88)
T ss_pred EEEEEEECCCCCCccCeEEEEeCCc----ceEEECCCeEEEEE-EcCC-CeEEEEEEe
Confidence 789999988 999999999998653 56899999999999 9999 599999985
No 13
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=97.66 E-value=0.00013 Score=61.99 Aligned_cols=63 Identities=17% Similarity=0.333 Sum_probs=49.0
Q ss_pred ccceEEEEEcCccc-ee--eeEecCCceEEeCccCCeeEEEEEee--ccccccCCeeEEEecCCceEE
Q 003526 486 IPSVLLSLSGDDGY-RN--NSVSWAGGSFHFDNLFPGNFYLRPLL--KEYAFSPPAQAIELGSGESRE 548 (813)
Q Consensus 486 l~Gv~vsLsg~~~~-r~--~~~Td~~G~f~f~~L~PG~Y~v~~~~--~ey~f~P~s~~V~V~~G~~~~ 548 (813)
|+||.+.|...++- .. ..+||++|.|.|.+|+||.|+|+... .+|...+....+++.+.....
T Consensus 1 L~Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~aP~GY~~~~~~~~~~i~~~~~~~ 68 (70)
T PF05738_consen 1 LAGATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETKAPDGYQLDDTPYEFTITEDGDVT 68 (70)
T ss_dssp -STEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEETTTTEEEEECEEEEEECTTSCEE
T ss_pred CCCeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEECCCCCEECCCceEEEEecCCEEE
Confidence 67899999866542 22 37899999999999999999999765 578877777778887765543
No 14
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=97.63 E-value=0.00017 Score=81.33 Aligned_cols=77 Identities=21% Similarity=0.274 Sum_probs=59.9
Q ss_pred eEEEEEEEEcC-CCCccCccEEEEEeCCCceeeeeEecCceeEEEcCCCCCCeEEEEEEeecCCCCcceeccCCceEEEE
Q 003526 557 AYSATGTITLL-SGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVK 635 (813)
Q Consensus 557 ~~sv~G~V~~~-~G~p~~gv~V~a~~~~~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~~~~~~~~~~~~~~p~~~~V~ 635 (813)
...|.|+|+|. +|+|+++|+|.+.+.. ..++||.+|.|.+ .|+|| +|+|++... |.. +..++|.
T Consensus 296 ~~gI~G~V~D~~~g~pl~~AtV~V~g~~----~~~~Td~~G~f~~-~l~pG-~ytl~vs~~---GY~------~~~~~v~ 360 (375)
T cd03863 296 HRGVRGFVLDATDGRGILNATISVADIN----HPVTTYKDGDYWR-LLVPG-TYKVTASAR---GYD------PVTKTVE 360 (375)
T ss_pred cCeEEEEEEeCCCCCCCCCeEEEEecCc----CceEECCCccEEE-ccCCe-eEEEEEEEc---Ccc------cEEEEEE
Confidence 34699999996 7999999999997643 4588999999998 69999 699999985 322 3356777
Q ss_pred ecCccccCceEEE
Q 003526 636 VGSGDIKGLDFLV 648 (813)
Q Consensus 636 V~~~dv~gv~f~~ 648 (813)
|......-++|.+
T Consensus 361 V~~~~~~~~~~~L 373 (375)
T cd03863 361 VDSKGAVQVNFTL 373 (375)
T ss_pred EcCCCcEEEEEEe
Confidence 8766666667653
No 15
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=97.62 E-value=0.00023 Score=80.42 Aligned_cols=75 Identities=13% Similarity=0.328 Sum_probs=60.8
Q ss_pred eeeeeeceEEEEEEccCCCCCCccceEEEEEcCccceeeeEecCCceEEeCccCCeeEEEEEeeccccccCCeeEEEecC
Q 003526 464 FSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGS 543 (813)
Q Consensus 464 f~~~~l~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~~~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~ey~f~P~s~~V~V~~ 543 (813)
|-.+...+|.|.|.|.. |+||+||.|.+.+.. .+...+||++|.|.+ .|+||.|.|++...+|. +..+.|.|.+
T Consensus 289 ~i~q~~~gI~G~V~D~~--g~pi~~A~V~v~g~~-~~~~~~T~~~G~y~~-~l~pG~Y~v~vsa~Gy~--~~~~~v~v~~ 362 (376)
T cd03866 289 YIKQVHLGVKGQVFDSN--GNPIPNAIVEVKGRK-HICPYRTNVNGEYFL-LLLPGKYMINVTAPGFK--TVITNVIIPY 362 (376)
T ss_pred HHHHhcCceEEEEECCC--CCccCCeEEEEEcCC-ceeEEEECCCceEEE-ecCCeeEEEEEEeCCcc--eEEEEEEeCC
Confidence 33455678999999874 899999999998763 234568999999977 69999999999998864 6788888876
Q ss_pred C
Q 003526 544 G 544 (813)
Q Consensus 544 G 544 (813)
.
T Consensus 363 ~ 363 (376)
T cd03866 363 N 363 (376)
T ss_pred C
Confidence 4
No 16
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=97.58 E-value=0.00041 Score=60.50 Aligned_cols=56 Identities=25% Similarity=0.513 Sum_probs=50.8
Q ss_pred EEEEEEEcCCCCccCccEEEEEeCCCceeeeeEecCceeEEEcCCCCCCeEEEEEEeec
Q 003526 559 SATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKD 617 (813)
Q Consensus 559 sv~G~V~~~~G~p~~gv~V~a~~~~~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~~~ 617 (813)
-|.|+|+ .+|+|++|+.|++++..+....+..|.++|.|||-. .|| .|+|++.++.
T Consensus 9 VItG~V~-~~G~Pv~gAyVRLLD~sgEFtaEvvts~~G~FRFfa-apG-~WtvRal~~~ 64 (85)
T PF07210_consen 9 VITGRVT-RDGEPVGGAYVRLLDSSGEFTAEVVTSATGDFRFFA-APG-SWTVRALSRG 64 (85)
T ss_pred EEEEEEe-cCCcCCCCeEEEEEcCCCCeEEEEEecCCccEEEEe-CCC-ceEEEEEccC
Confidence 3889999 899999999999999888889999999999999985 599 6999998764
No 17
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=97.58 E-value=0.00021 Score=80.98 Aligned_cols=75 Identities=25% Similarity=0.394 Sum_probs=59.2
Q ss_pred EEEEEEEEcCCCCccCccEEEEEeCCCceeeeeEecCceeEEEcCCCCCCeEEEEEEeecCCCCcceeccCCceEEEEec
Q 003526 558 YSATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVG 637 (813)
Q Consensus 558 ~sv~G~V~~~~G~p~~gv~V~a~~~~~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~~~~~~~~~~~~~~p~~~~V~V~ 637 (813)
..|.|+|+|.+|+|+++|+|.+.+.. ..++||.+|.| ++.|+|| .|+|++.+. |.. +..++|+|.
T Consensus 316 ~gI~G~V~D~~g~pi~~A~V~v~g~~----~~~~T~~~G~y-~r~l~pG-~Y~l~vs~~---Gy~------~~t~~v~V~ 380 (392)
T cd03864 316 QGIKGMVTDENNNGIANAVISVSGIS----HDVTSGTLGDY-FRLLLPG-TYTVTASAP---GYQ------PSTVTVTVG 380 (392)
T ss_pred CeEEEEEECCCCCccCCeEEEEECCc----cceEECCCCcE-EecCCCe-eEEEEEEEc---Cce------eEEEEEEEc
Confidence 36999999999999999999997543 35789999999 9999999 699999985 222 335667777
Q ss_pred CccccCceEE
Q 003526 638 SGDIKGLDFL 647 (813)
Q Consensus 638 ~~dv~gv~f~ 647 (813)
..+...++|+
T Consensus 381 ~~~~~~~df~ 390 (392)
T cd03864 381 PAEATLVNFQ 390 (392)
T ss_pred CCCcEEEeeE
Confidence 6655556665
No 18
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=97.54 E-value=0.00034 Score=79.04 Aligned_cols=77 Identities=18% Similarity=0.339 Sum_probs=63.0
Q ss_pred eeceEEEEEEccCCCCCCccceEEEEEcCccceeeeEecCCceEEeCccCCeeEEEEEeeccccccCCeeEEEecC-Cce
Q 003526 468 KLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGS-GES 546 (813)
Q Consensus 468 ~l~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~~~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~ey~f~P~s~~V~V~~-G~~ 546 (813)
...+|+|.|+|.. |+|++||.|++.+. ...++||.+|.|.+ .|+||.|.|++...+|. +..+.+.+.. |+.
T Consensus 296 a~~~i~G~V~d~~--g~pl~~A~V~i~~~---~~~~~Td~~G~f~~-~l~~G~y~l~vs~~Gy~--~~~~~v~v~~~g~~ 367 (374)
T cd03858 296 VHRGIKGFVRDAN--GNPIANATISVEGI---NHDVTTAEDGDYWR-LLLPGTYNVTASAPGYE--PQTKSVVVPNDNSA 367 (374)
T ss_pred cCCceEEEEECCC--CCccCCeEEEEecc---eeeeEECCCceEEE-ecCCEeEEEEEEEcCcc--eEEEEEEEecCCce
Confidence 3448999999984 89999999999755 24578999999998 59999999999988764 6677788777 777
Q ss_pred EEEEEE
Q 003526 547 REVIFQ 552 (813)
Q Consensus 547 ~~v~~~ 552 (813)
..++|.
T Consensus 368 ~~~~~~ 373 (374)
T cd03858 368 VVVDFT 373 (374)
T ss_pred EEEeeE
Confidence 777664
No 19
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=97.50 E-value=0.00033 Score=78.66 Aligned_cols=74 Identities=20% Similarity=0.370 Sum_probs=59.2
Q ss_pred EEEEEEEEcCCCCccCccEEEEEeCCCceeeeeEecCceeEEEcCCCCCCeEEEEEEeecCCCCcceeccCCceEEEEec
Q 003526 558 YSATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVG 637 (813)
Q Consensus 558 ~sv~G~V~~~~G~p~~gv~V~a~~~~~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~~~~~~~~~~~~~~p~~~~V~V~ 637 (813)
..|.|+|+|.+|+|+++|+|.+.+. ..++||.+|.|.+. |+|| .|+|++... |.. +....|.|.
T Consensus 287 ~gI~G~V~d~~g~pi~~A~V~v~g~-----~~~~T~~~G~y~~~-L~pG-~y~v~vs~~---Gy~------~~~~~V~v~ 350 (363)
T cd06245 287 KGVHGVVTDKAGKPISGATIVLNGG-----HRVYTKEGGYFHVL-LAPG-QHNINVIAE---GYQ------QEHLPVVVS 350 (363)
T ss_pred cEEEEEEEcCCCCCccceEEEEeCC-----CceEeCCCcEEEEe-cCCc-eEEEEEEEe---Cce------eEEEEEEEc
Confidence 4699999999999999999999763 15789999999997 9999 699999985 222 235667777
Q ss_pred CccccCceEE
Q 003526 638 SGDIKGLDFL 647 (813)
Q Consensus 638 ~~dv~gv~f~ 647 (813)
.....-+||+
T Consensus 351 ~~~~~~~~f~ 360 (363)
T cd06245 351 HDEASSVKIV 360 (363)
T ss_pred CCCeEEEEEE
Confidence 6666667775
No 20
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=97.49 E-value=0.00038 Score=78.64 Aligned_cols=79 Identities=22% Similarity=0.362 Sum_probs=63.8
Q ss_pred eeeeceEEEEEEccCCCCCCccceEEEEEcCccceeeeEecCCceEEeCccCCeeEEEEEeeccccccCCeeE-EEecCC
Q 003526 466 CQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQA-IELGSG 544 (813)
Q Consensus 466 ~~~l~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~~~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~ey~f~P~s~~-V~V~~G 544 (813)
.+-..+|.|+|+|.. |+|++||.|++.+.+ ..++||++|.|.. .|+||.|.|++...+|. +..+. +.|..|
T Consensus 292 ~~~~~~i~G~V~d~~--g~pv~~A~V~v~~~~---~~~~td~~G~y~~-~l~~G~Y~l~vs~~Gf~--~~~~~~v~v~~g 363 (372)
T cd03868 292 EQVHIGVKGFVRDAS--GNPIEDATIMVAGID---HNVTTAKFGDYWR-LLLPGTYTITAVAPGYE--PSTVTDVVVKEG 363 (372)
T ss_pred HHhCCceEEEEEcCC--CCcCCCcEEEEEecc---cceEeCCCceEEe-cCCCEEEEEEEEecCCC--ceEEeeEEEcCC
Confidence 344678999999984 999999999998763 3578999999985 89999999999988765 55555 568888
Q ss_pred ceEEEEEE
Q 003526 545 ESREVIFQ 552 (813)
Q Consensus 545 ~~~~v~~~ 552 (813)
+...++|.
T Consensus 364 ~~~~~~~~ 371 (372)
T cd03868 364 EATSVNFT 371 (372)
T ss_pred CeEEEeeE
Confidence 88777664
No 21
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=97.49 E-value=0.00036 Score=79.06 Aligned_cols=74 Identities=19% Similarity=0.287 Sum_probs=59.1
Q ss_pred EEEEEEEcCCCCccCccEEEEEeCCCceeeeeEecCceeEEEcCCCCCCeEEEEEEeecCCCCcceeccCCceEEEEecC
Q 003526 559 SATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGS 638 (813)
Q Consensus 559 sv~G~V~~~~G~p~~gv~V~a~~~~~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~~~~~~~~~~~~~~p~~~~V~V~~ 638 (813)
.|.|+|+|.+|.|+++|+|.+.+.. ..++||.+|.|.+ .|+|| +|+|++.+. |.. +....|.|..
T Consensus 327 gI~G~V~D~~g~pI~~AtV~V~g~~----~~~~T~~~G~Y~~-~L~pG-~Ytv~vsa~---Gy~------~~~~~V~V~~ 391 (402)
T cd03865 327 GVKGFVKDLQGNPIANATISVEGID----HDITSAKDGDYWR-LLAPG-NYKLTASAP---GYL------AVVKKVAVPY 391 (402)
T ss_pred ceEEEEECCCCCcCCCeEEEEEcCc----cccEECCCeeEEE-CCCCE-EEEEEEEec---Ccc------cEEEEEEEcC
Confidence 4999999999999999999998653 3468999999997 89999 699999985 222 2246677776
Q ss_pred ccccCceEE
Q 003526 639 GDIKGLDFL 647 (813)
Q Consensus 639 ~dv~gv~f~ 647 (813)
++...+||+
T Consensus 392 ~~~~~vdf~ 400 (402)
T cd03865 392 SPAVRVDFE 400 (402)
T ss_pred CCcEEEeEE
Confidence 667777775
No 22
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=97.36 E-value=0.00063 Score=77.38 Aligned_cols=77 Identities=21% Similarity=0.257 Sum_probs=61.9
Q ss_pred eeceEEEEEEccCCCCCCccceEEEEEcCccceeeeEecCCceEEeCccCCeeEEEEEeeccccccCCeeEEEecC--Cc
Q 003526 468 KLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGS--GE 545 (813)
Q Consensus 468 ~l~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~~~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~ey~f~P~s~~V~V~~--G~ 545 (813)
-.-+|.|.|+|+. |+||+||.|.+.+.. ..++||++|.|.. .|+||+|.|.+...+|. +..+.|+|.+ ++
T Consensus 316 ~~~~i~G~V~D~~--g~pi~~A~V~v~g~~---~~~~Td~~G~y~~-~l~~G~y~l~vs~~Gy~--~~~~~v~v~~~~~~ 387 (395)
T cd03867 316 VHRGIKGFVKDKD--GNPIKGARISVRGIR---HDITTAEDGDYWR-LLPPGIHIVSAQAPGYT--KVMKRVTLPARMKR 387 (395)
T ss_pred ccceeEEEEEcCC--CCccCCeEEEEeccc---cceEECCCceEEE-ecCCCcEEEEEEecCee--eEEEEEEeCCcCCC
Confidence 3457899999985 899999999998763 3578999999975 89999999999888764 6778888865 45
Q ss_pred eEEEEEE
Q 003526 546 SREVIFQ 552 (813)
Q Consensus 546 ~~~v~~~ 552 (813)
...++|.
T Consensus 388 ~~~~d~~ 394 (395)
T cd03867 388 AGRVDFV 394 (395)
T ss_pred ceEeeeE
Confidence 5666664
No 23
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=97.24 E-value=0.0031 Score=55.12 Aligned_cols=77 Identities=26% Similarity=0.401 Sum_probs=55.9
Q ss_pred eeceEEEEEEccCCCCCCccceEEEEEcCc-cceeeeEecCCceEEeCccCCeeEEEEEeeccccccCCeeEEEecCCce
Q 003526 468 KLSQISVRIYSKDDAGEPIPSVLLSLSGDD-GYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGES 546 (813)
Q Consensus 468 ~l~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~-~~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~ey~f~P~s~~V~V~~G~~ 546 (813)
+..-|+|+|+ .+ |+|++|+-|.|-+.. .+.....|.++|.|+| ...||.++|+++...-. ....|.-..|..
T Consensus 6 ke~VItG~V~-~~--G~Pv~gAyVRLLD~sgEFtaEvvts~~G~FRF-faapG~WtvRal~~~g~---~d~~V~a~~g~v 78 (85)
T PF07210_consen 6 KETVITGRVT-RD--GEPVGGAYVRLLDSSGEFTAEVVTSATGDFRF-FAAPGSWTVRALSRGGN---GDAMVTAEGGGV 78 (85)
T ss_pred ceEEEEEEEe-cC--CcCCCCeEEEEEcCCCCeEEEEEecCCccEEE-EeCCCceEEEEEccCCC---CceEEecCCCce
Confidence 4556899999 43 999999999986543 3666788999999999 78999999999764311 134455555555
Q ss_pred EEEEE
Q 003526 547 REVIF 551 (813)
Q Consensus 547 ~~v~~ 551 (813)
.++++
T Consensus 79 ~~v~v 83 (85)
T PF07210_consen 79 HEVDV 83 (85)
T ss_pred EEEEe
Confidence 55443
No 24
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=97.19 E-value=0.00098 Score=75.33 Aligned_cols=55 Identities=27% Similarity=0.389 Sum_probs=47.5
Q ss_pred eeEEEEEEEEcCCCCccCccEEEEEeCCCceeeeeEecCceeEEEcCCCCCCeEEEEEEee
Q 003526 556 VAYSATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKK 616 (813)
Q Consensus 556 ~~~sv~G~V~~~~G~p~~gv~V~a~~~~~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~~ 616 (813)
+..+|.|+|+|.+|+|+++|+|.+.+.. ..++||.+|.|. ..|+|| .|+|++...
T Consensus 294 ~~~~i~G~V~d~~g~pv~~A~V~v~~~~----~~~~td~~G~y~-~~l~~G-~Y~l~vs~~ 348 (372)
T cd03868 294 VHIGVKGFVRDASGNPIEDATIMVAGID----HNVTTAKFGDYW-RLLLPG-TYTITAVAP 348 (372)
T ss_pred hCCceEEEEEcCCCCcCCCcEEEEEecc----cceEeCCCceEE-ecCCCE-EEEEEEEec
Confidence 3456999999999999999999997643 457999999998 589999 699999985
No 25
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=97.17 E-value=0.0025 Score=58.10 Aligned_cols=76 Identities=21% Similarity=0.421 Sum_probs=40.0
Q ss_pred ceEEEEEEccCCCC-CCc-cceEEEEEcC------ccceeeeEecCCceEEeCccCCeeEEEEEee----ccccccCCee
Q 003526 470 SQISVRIYSKDDAG-EPI-PSVLLSLSGD------DGYRNNSVSWAGGSFHFDNLFPGNFYLRPLL----KEYAFSPPAQ 537 (813)
Q Consensus 470 ~~I~g~V~d~~~~g-~Pl-~Gv~vsLsg~------~~~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~----~ey~f~P~s~ 537 (813)
+.|+|+|...|... .+. ..+.|-|... .++---+.+|++|.|.|+++.||+|.|.+.. .||.. ...
T Consensus 3 G~VsG~l~l~dg~~~~~~~~~~~Vgl~~~~d~~q~~~yqYwt~td~~G~Fti~~V~pGtY~L~ay~~g~~g~~~~--~~~ 80 (95)
T PF14686_consen 3 GSVSGRLTLSDGVTNPPAGANAVVGLAPPGDFQQNKGYQYWTRTDSDGNFTIPNVRPGTYRLYAYADGIFGDYKV--ASD 80 (95)
T ss_dssp BEEEEEEE---SS--TT--S-EEEEEE--------SS-EEEEE--TTSEEE---B-SEEEEEEEEE----TTEEE--EEE
T ss_pred CEEEEEEEEccCcccCccceeEEEEeeeccccccCCCCcEEEEeCCCCcEEeCCeeCcEeEEEEEEecccCceEE--ecc
Confidence 56888887654111 344 3566666521 1332336799999999999999999999987 44442 267
Q ss_pred EEEecCCceE
Q 003526 538 AIELGSGESR 547 (813)
Q Consensus 538 ~V~V~~G~~~ 547 (813)
.|+|..|...
T Consensus 81 ~ItV~~g~~~ 90 (95)
T PF14686_consen 81 SITVSGGTTT 90 (95)
T ss_dssp EEEE-T-EEE
T ss_pred eEEEcCCcEe
Confidence 7888866544
No 26
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=97.11 E-value=0.0014 Score=74.03 Aligned_cols=53 Identities=19% Similarity=0.312 Sum_probs=45.9
Q ss_pred EEEEEEEEcCCCCccCccEEEEEeCCCceeeeeEecCceeEEEcCCCCCCeEEEEEEee
Q 003526 558 YSATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKK 616 (813)
Q Consensus 558 ~sv~G~V~~~~G~p~~gv~V~a~~~~~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~~ 616 (813)
.+|.|+|+|.+|+|+++|+|.+.+. ...+.||.+|.|++. |+|| .|+|++...
T Consensus 298 ~~i~G~V~d~~g~pl~~A~V~i~~~----~~~~~Td~~G~f~~~-l~~G-~y~l~vs~~ 350 (374)
T cd03858 298 RGIKGFVRDANGNPIANATISVEGI----NHDVTTAEDGDYWRL-LLPG-TYNVTASAP 350 (374)
T ss_pred CceEEEEECCCCCccCCeEEEEecc----eeeeEECCCceEEEe-cCCE-eEEEEEEEc
Confidence 4799999999999999999999543 256889999999986 8899 699999984
No 27
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=97.04 E-value=0.0049 Score=59.29 Aligned_cols=56 Identities=20% Similarity=0.452 Sum_probs=47.9
Q ss_pred EEEEEEEcCCCCccCccEEEEEeCC--C----ceeeeeEecCceeEEEcCCCCCCeEEEEEEee
Q 003526 559 SATGTITLLSGQPKDGVSVEARSES--K----GYYEETVTDTSGSYRLRGLHPDTTYVIKVVKK 616 (813)
Q Consensus 559 sv~G~V~~~~G~p~~gv~V~a~~~~--~----~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~~ 616 (813)
.|+|...|..|+|++|+++.+.... . .......||++|+|.|+ +.|| +|.|.+..+
T Consensus 4 ~ISGvL~dg~G~pv~g~~I~L~A~~tS~~Vv~~t~as~~t~~~G~Ys~~-~epG-~Y~V~l~~~ 65 (134)
T PF08400_consen 4 KISGVLKDGAGKPVPGCTITLKARRTSSTVVVGTVASVVTGEAGEYSFD-VEPG-VYRVTLKVE 65 (134)
T ss_pred EEEEEEeCCCCCcCCCCEEEEEEccCchheEEEEEEEEEcCCCceEEEE-ecCC-eEEEEEEEC
Confidence 4899999999999999999998753 1 24566789999999998 8899 799999874
No 28
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=97.01 E-value=0.0013 Score=63.78 Aligned_cols=60 Identities=18% Similarity=0.310 Sum_probs=48.5
Q ss_pred ceEEEEEEccCCCCCCccceEEEEEcCcc----ceeeeEecCCceEEe---C-ccCCeeEEEEEeeccc
Q 003526 470 SQISVRIYSKDDAGEPIPSVLLSLSGDDG----YRNNSVSWAGGSFHF---D-NLFPGNFYLRPLLKEY 530 (813)
Q Consensus 470 ~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~~----~r~~~~Td~~G~f~f---~-~L~PG~Y~v~~~~~ey 530 (813)
..|++.|.|.. .|.|++||.|+|...++ ....++||+||+|.+ . .+.||.|.|+....+|
T Consensus 27 ~~Is~HVLDt~-~G~PA~gV~V~L~~~~~~~w~~l~~~~Td~dGR~~~l~~~~~~~~G~Y~L~F~t~~Y 94 (137)
T PRK15036 27 NILSVHILNQQ-TGKPAADVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGDY 94 (137)
T ss_pred CCeEEEEEeCC-CCcCCCCCEEEEEEccCCceEEEEEEEECCCCCCccccCcccCCCeeEEEEEEcchh
Confidence 46999999984 69999999999986431 124578999999986 2 3889999999887775
No 29
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=96.87 E-value=0.0038 Score=70.60 Aligned_cols=56 Identities=25% Similarity=0.337 Sum_probs=46.3
Q ss_pred eEEEEEEEEcCCCCccCccEEEEEeCCCceeeeeEecCceeEEEcCCCCCCeEEEEEEee
Q 003526 557 AYSATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKK 616 (813)
Q Consensus 557 ~~sv~G~V~~~~G~p~~gv~V~a~~~~~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~~ 616 (813)
..+|.|+|+|.+|+|++||+|.+.+.. .....+||.+|.|.+ .|.|| .|+|++.++
T Consensus 294 ~~gI~G~V~D~~g~pi~~A~V~v~g~~--~~~~~~T~~~G~y~~-~l~pG-~Y~v~vsa~ 349 (376)
T cd03866 294 HLGVKGQVFDSNGNPIPNAIVEVKGRK--HICPYRTNVNGEYFL-LLLPG-KYMINVTAP 349 (376)
T ss_pred cCceEEEEECCCCCccCCeEEEEEcCC--ceeEEEECCCceEEE-ecCCe-eEEEEEEeC
Confidence 346999999999999999999997542 223568999999966 49999 699999985
No 30
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=96.83 E-value=0.0051 Score=59.75 Aligned_cols=60 Identities=18% Similarity=0.218 Sum_probs=48.2
Q ss_pred EEEEEEEcC-CCCccCccEEEEEeCCC---ceeeeeEecCceeEEE---cC-CCCCCeEEEEEEeecCC
Q 003526 559 SATGTITLL-SGQPKDGVSVEARSESK---GYYEETVTDTSGSYRL---RG-LHPDTTYVIKVVKKDGF 619 (813)
Q Consensus 559 sv~G~V~~~-~G~p~~gv~V~a~~~~~---~~~~~a~TD~~G~fr~---~g-L~PG~~Y~V~v~~~~~~ 619 (813)
.|+|.|.|. .|+|.+||.|.+...++ ....++.||+||+|.+ .+ +.|| .|++.....+.|
T Consensus 28 ~Is~HVLDt~~G~PA~gV~V~L~~~~~~~w~~l~~~~Td~dGR~~~l~~~~~~~~G-~Y~L~F~t~~Yf 95 (137)
T PRK15036 28 ILSVHILNQQTGKPAADVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTG-DYRVVFKTGDYF 95 (137)
T ss_pred CeEEEEEeCCCCcCCCCCEEEEEEccCCceEEEEEEEECCCCCCccccCcccCCCe-eEEEEEEcchhh
Confidence 488999987 69999999999986532 2457899999999986 33 8899 699999875443
No 31
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=96.77 E-value=0.004 Score=70.96 Aligned_cols=53 Identities=21% Similarity=0.352 Sum_probs=45.8
Q ss_pred EEEEEEEEcCCCCccCccEEEEEeCCCceeeeeEecCceeEEEcCCCCCCeEEEEEEee
Q 003526 558 YSATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKK 616 (813)
Q Consensus 558 ~sv~G~V~~~~G~p~~gv~V~a~~~~~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~~ 616 (813)
..|.|+|+|.+|+|+++|+|.+.+.. ..++||.+|.|. +.|+|| .|+|++...
T Consensus 318 ~~i~G~V~D~~g~pi~~A~V~v~g~~----~~~~Td~~G~y~-~~l~~G-~y~l~vs~~ 370 (395)
T cd03867 318 RGIKGFVKDKDGNPIKGARISVRGIR----HDITTAEDGDYW-RLLPPG-IHIVSAQAP 370 (395)
T ss_pred ceeEEEEEcCCCCccCCeEEEEeccc----cceEECCCceEE-EecCCC-cEEEEEEec
Confidence 35899999999999999999997642 458899999997 789999 699999985
No 32
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=96.76 E-value=0.0066 Score=55.31 Aligned_cols=58 Identities=29% Similarity=0.464 Sum_probs=32.0
Q ss_pred EEEEEEEEcCCC--CccC--ccEEEEEeC-----CCceeeeeEecCceeEEEcCCCCCCeEEEEEEee
Q 003526 558 YSATGTITLLSG--QPKD--GVSVEARSE-----SKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKK 616 (813)
Q Consensus 558 ~sv~G~V~~~~G--~p~~--gv~V~a~~~-----~~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~~ 616 (813)
.+|+|+|...+| .+.+ .+.|-+... +..++=.+.+|++|+|+|.+|+|| .|++.+-.+
T Consensus 3 G~VsG~l~l~dg~~~~~~~~~~~Vgl~~~~d~~q~~~yqYwt~td~~G~Fti~~V~pG-tY~L~ay~~ 69 (95)
T PF14686_consen 3 GSVSGRLTLSDGVTNPPAGANAVVGLAPPGDFQQNKGYQYWTRTDSDGNFTIPNVRPG-TYRLYAYAD 69 (95)
T ss_dssp BEEEEEEE---SS--TT--S-EEEEEE--------SS-EEEEE--TTSEEE---B-SE-EEEEEEEE-
T ss_pred CEEEEEEEEccCcccCccceeEEEEeeeccccccCCCCcEEEEeCCCCcEEeCCeeCc-EeEEEEEEe
Confidence 359999996666 3333 444444322 344677899999999999999999 699999884
No 33
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=96.66 E-value=0.0074 Score=58.07 Aligned_cols=57 Identities=21% Similarity=0.417 Sum_probs=45.3
Q ss_pred eEEEEEEccCCCCCCccceEEEEEcCc-------cceeeeEecCCceEEeCccCCeeEEEEEeeccc
Q 003526 471 QISVRIYSKDDAGEPIPSVLLSLSGDD-------GYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEY 530 (813)
Q Consensus 471 ~I~g~V~d~~~~g~Pl~Gv~vsLsg~~-------~~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~ey 530 (813)
.|+|...|.. |+|++|+.+.|..-. +......||++|.|+| ++.||.|.|.....++
T Consensus 4 ~ISGvL~dg~--G~pv~g~~I~L~A~~tS~~Vv~~t~as~~t~~~G~Ys~-~~epG~Y~V~l~~~g~ 67 (134)
T PF08400_consen 4 KISGVLKDGA--GKPVPGCTITLKARRTSSTVVVGTVASVVTGEAGEYSF-DVEPGVYRVTLKVEGR 67 (134)
T ss_pred EEEEEEeCCC--CCcCCCCEEEEEEccCchheEEEEEEEEEcCCCceEEE-EecCCeEEEEEEECCC
Confidence 3788888764 999999999986421 1234567999999999 8999999999877664
No 34
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=96.64 E-value=0.016 Score=49.14 Aligned_cols=62 Identities=16% Similarity=0.333 Sum_probs=47.1
Q ss_pred CceEEEEEEcCcccccCcceee--EEEecCCceEEEeecCCccEEEEEEeeccccccCCCCeEEEeeEEEEEeecCc
Q 003526 119 PLVTVTLMRLGQKHYDGTEKKT--VSLTDDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVGTND 193 (813)
Q Consensus 119 ~~v~VtL~~~~~~~~~~~~~~~--~~~t~~~g~f~F~~VlPG~Y~v~v~~~~~~~~~~~~~wcw~~~~~~V~V~~~~ 193 (813)
+|+.+.|...++. ... ...|+++|.|.|.++.||+|.|+-... .+.|-+......+.+..++
T Consensus 2 ~Ga~f~L~~~~~~------~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~a-------P~GY~~~~~~~~~~i~~~~ 65 (70)
T PF05738_consen 2 AGATFELYDEDGN------EVIEVTVTTDENGKYTFKNLPPGTYTLKETKA-------PDGYQLDDTPYEFTITEDG 65 (70)
T ss_dssp STEEEEEEETTSE------EEEEEEEEGGTTSEEEEEEEESEEEEEEEEET-------TTTEEEEECEEEEEECTTS
T ss_pred CCeEEEEEECCCC------EEEEEEEEECCCCEEEEeecCCeEEEEEEEEC-------CCCCEECCCceEEEEecCC
Confidence 4899999988775 233 356799999999999999999977631 4557777777777776554
No 35
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=96.39 E-value=0.0065 Score=59.67 Aligned_cols=53 Identities=30% Similarity=0.424 Sum_probs=42.6
Q ss_pred EEEEEEEEcCCCCccCccEEEEEeCC--C--------------ceeeeeEecCceeEEEcCCCCCCeEEE
Q 003526 558 YSATGTITLLSGQPKDGVSVEARSES--K--------------GYYEETVTDTSGSYRLRGLHPDTTYVI 611 (813)
Q Consensus 558 ~sv~G~V~~~~G~p~~gv~V~a~~~~--~--------------~~~~~a~TD~~G~fr~~gL~PG~~Y~V 611 (813)
..+.|+|+|.+|+|+++|.|++-... + .......||++|.|+|..+.||. |.+
T Consensus 12 l~l~G~V~D~~g~pv~~A~VeiW~~d~~G~Y~~~~~~~~~~~~~~rg~~~Td~~G~y~f~ti~Pg~-Y~~ 80 (146)
T cd00421 12 LTLTGTVLDGDGCPVPDALVEIWQADADGRYSGQDDSGLDPEFFLRGRQITDADGRYRFRTIKPGP-YPI 80 (146)
T ss_pred EEEEEEEECCCCCCCCCcEEEEEecCCCCccCCcCccccCCCCCCEEEEEECCCcCEEEEEEcCCC-CCC
Confidence 35889999999999999999975322 1 12336789999999999999995 875
No 36
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=96.35 E-value=0.0097 Score=67.63 Aligned_cols=102 Identities=18% Similarity=0.268 Sum_probs=71.5
Q ss_pred ceEEEEEeCCCeeeeecC--C----------cceeeeeeceEEEEEEccCCCCCCccceEEEEEcCccceeeeEecCCce
Q 003526 443 ITYNVEASKPGYYLRQVG--P----------NSFSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGS 510 (813)
Q Consensus 443 g~Y~i~A~k~gy~~~~~~--~----------~~f~~~~l~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~~~r~~~~Td~~G~ 510 (813)
.-|+|+.+..--++.+.. + +.|-.+-..+|.|.|.|.. |+||++|.|++.|-+ ...+|.++|-
T Consensus 290 ncfEiTlElsc~K~P~~~~L~~~W~~N~~all~~~~~vh~GikG~V~d~~--g~~i~~a~i~v~g~~---~~v~t~~~Gd 364 (405)
T cd03869 290 NCFELSVYLGCDKFPHESELPEEWENNKESLLVFMEQVHRGIKGVVRDKT--GKGIPNAIISVEGIN---HDIRTASDGD 364 (405)
T ss_pred CeEEEEEeccCCCCCChHHHHHHHHHHHHHHHHHHHHHhcCceEEEECCC--CCcCCCcEEEEecCc---cceeeCCCCc
Confidence 356676665444444332 1 2333344567999999974 999999999998753 3456778886
Q ss_pred EEeCccCCeeEEEEEeeccccccCCeeEEEecCC-ceEEEEEE
Q 003526 511 FHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSG-ESREVIFQ 552 (813)
Q Consensus 511 f~f~~L~PG~Y~v~~~~~ey~f~P~s~~V~V~~G-~~~~v~~~ 552 (813)
|-= -|.||+|.|++...+|. |..+.++|..+ ..+.++|.
T Consensus 365 ywR-ll~pG~y~v~~~a~gy~--~~~~~~~v~~~~~~~~~~f~ 404 (405)
T cd03869 365 YWR-LLNPGEYRVTAHAEGYT--SSTKNCEVGYEMGPTQCNFT 404 (405)
T ss_pred eEE-ecCCceEEEEEEecCCC--cccEEEEEcCCCCceeeccC
Confidence 643 59999999999998865 88888898865 44555553
No 37
>KOG2649 consensus Zinc carboxypeptidase [General function prediction only]
Probab=96.26 E-value=0.013 Score=66.49 Aligned_cols=87 Identities=20% Similarity=0.360 Sum_probs=68.7
Q ss_pred cceeeeeeceEEEEEEccCCCCCCccceEEEEEcCccceeeeEecCCceEEeCccCCeeEEEEEeeccccccCCeeEEEe
Q 003526 462 NSFSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIEL 541 (813)
Q Consensus 462 ~~f~~~~l~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~~~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~ey~f~P~s~~V~V 541 (813)
+.|-.+-..+|.|.|.|. +|+||++|+||+.|.. -..+|..+|-|== =|.||.|.|++...+|. |..+.|+|
T Consensus 370 l~f~eqvH~GIkG~V~D~--~G~~I~NA~IsV~gin---Hdv~T~~~GDYWR-LL~PG~y~vta~A~Gy~--~~tk~v~V 441 (500)
T KOG2649|consen 370 LNFVEQVHRGIKGLVFDD--TGNPIANATISVDGIN---HDVTTAKEGDYWR-LLPPGKYIITASAEGYD--PVTKTVTV 441 (500)
T ss_pred HHHHHHHHhccceeEEcC--CCCccCceEEEEecCc---CceeecCCCceEE-eeCCcceEEEEecCCCc--ceeeEEEe
Confidence 356666678999999995 4999999999998763 2346677886644 59999999999988765 89999999
Q ss_pred cCCceEEEEEEEEEe
Q 003526 542 GSGESREVIFQATRV 556 (813)
Q Consensus 542 ~~G~~~~v~~~~~r~ 556 (813)
..-....++|.+.|.
T Consensus 442 ~~~~a~~~df~L~~~ 456 (500)
T KOG2649|consen 442 PPDRAARVNFTLQRS 456 (500)
T ss_pred CCCCccceeEEEecC
Confidence 875556788877764
No 38
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=96.24 E-value=0.025 Score=53.12 Aligned_cols=91 Identities=22% Similarity=0.291 Sum_probs=61.2
Q ss_pred ceEEEEEEccCCCCCCccceEEEEEcCc---c--ceeeeEecCCceEE-----eCccCCeeEEEEEeeccc-------cc
Q 003526 470 SQISVRIYSKDDAGEPIPSVLLSLSGDD---G--YRNNSVSWAGGSFH-----FDNLFPGNFYLRPLLKEY-------AF 532 (813)
Q Consensus 470 ~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~---~--~r~~~~Td~~G~f~-----f~~L~PG~Y~v~~~~~ey-------~f 532 (813)
|.|+..|.|. ..|.|.+|+.|+|..-+ + ...+++||+||+.. -..+.+|.|.|+....+| .|
T Consensus 1 ~~iStHVLDt-~~G~PA~gv~V~L~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~~Yf~~~~~~~F 79 (112)
T PF00576_consen 1 CPISTHVLDT-TTGKPAAGVPVTLYRLDSDGSWTLLAEGVTDADGRIKQPLLEGESLEPGIYKLVFDTGDYFAAQGIPSF 79 (112)
T ss_dssp SSEEEEEEET-TTTEE-TT-EEEEEEEETTSCEEEEEEEEBETTSEESSTSSETTTS-SEEEEEEEEHHHHHHHTTCSTS
T ss_pred CCcEEEEeeC-CCCCCccCCEEEEEEecCCCCcEEEEEEEECCCCcccccccccccccceEEEEEEEHHHhHhhcCCCee
Confidence 6789999998 46999999999987433 1 23568999999992 347789999999876554 23
Q ss_pred cCC-eeEEEecC-CceEEEEEEEEEeeEEEE
Q 003526 533 SPP-AQAIELGS-GESREVIFQATRVAYSAT 561 (813)
Q Consensus 533 ~P~-s~~V~V~~-G~~~~v~~~~~r~~~sv~ 561 (813)
.|. ...+.|.+ .++-.|.+...+-+||.+
T Consensus 80 ~p~V~I~F~v~d~~~HYHvPLLlSP~gYSTY 110 (112)
T PF00576_consen 80 YPEVEIRFTVKDPQQHYHVPLLLSPFGYSTY 110 (112)
T ss_dssp ESEEEEEEEESTTTSEEEEEEEEETTEEEEE
T ss_pred eecceEEEEECCCCCcEEEEEEecCceeeEE
Confidence 332 23355663 467777777666666654
No 39
>COG1470 Predicted membrane protein [Function unknown]
Probab=96.12 E-value=3.7 Score=47.21 Aligned_cols=75 Identities=21% Similarity=0.455 Sum_probs=52.6
Q ss_pred eceEEEEEEccCCCCCCccceEEEEEcCccceeeeEecCCceEEeCccCCeeEEEEEeecc-ccccCCeeEEEecCCceE
Q 003526 469 LSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKE-YAFSPPAQAIELGSGESR 547 (813)
Q Consensus 469 l~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~~~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~e-y~f~P~s~~V~V~~G~~~ 547 (813)
-++...++.|.+ |.+++-+.+.. |.++ -.|+..|.-.+ +..||.|.+..-.++ |. -....|.+.+|...
T Consensus 186 ~a~~~l~~vd~~--G~gv~~~~v~~-g~e~----~ets~~g~~~~-e~t~g~y~~~i~~~g~ye--~~~~av~l~d~~t~ 255 (513)
T COG1470 186 KAQSKLRLVDDD--GAGVPKALVKD-GNES----FETSSKGNLEV-EITPGKYVVLIAKKGIYE--KKKRAVKLNDGETK 255 (513)
T ss_pred cceEEEEEEccC--CCccchheeec-Ccee----EEeecccceeE-EecCcceEEEecccccee--cceEEEEcCCCccc
Confidence 344556777765 89999887764 2222 35788888888 889999998876665 44 35777888888776
Q ss_pred EEEEEE
Q 003526 548 EVIFQA 553 (813)
Q Consensus 548 ~v~~~~ 553 (813)
++.+..
T Consensus 256 dLkls~ 261 (513)
T COG1470 256 DLKLSV 261 (513)
T ss_pred ceeEEE
Confidence 655543
No 40
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.00 E-value=0.012 Score=61.67 Aligned_cols=70 Identities=23% Similarity=0.280 Sum_probs=50.0
Q ss_pred EEEEEEEEcCCCCccCccEEEEEeCC--C-------c---------eeeeeEecCceeEEEcCCCCCCeEEEEEEeecCC
Q 003526 558 YSATGTITLLSGQPKDGVSVEARSES--K-------G---------YYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGF 619 (813)
Q Consensus 558 ~sv~G~V~~~~G~p~~gv~V~a~~~~--~-------~---------~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~~~~~ 619 (813)
..+.|+|.|.+|.|++++.|++=-.+ | . ....+.||++|.|+|+.+.||+ |-.....+
T Consensus 73 i~l~G~VlD~~G~Pv~~A~VEiWQAda~GrY~~~~d~~~~~~~~f~g~Gr~~Td~~G~y~F~Ti~Pg~-yp~~~~~~--- 148 (226)
T COG3485 73 ILLEGRVLDGNGRPVPDALVEIWQADADGRYSHPKDSRLAPLPNFNGRGRTITDEDGEYRFRTIKPGP-YPWRNGGP--- 148 (226)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEEcCCCCcccCccccccCcCccccceEEEEeCCCceEEEEEeeccc-ccCCCCCC---
Confidence 45899999999999999999963211 1 1 2345889999999999999995 75433321
Q ss_pred CCcceeccCCceEEEEec
Q 003526 620 GSTKIERASPESVTVKVG 637 (813)
Q Consensus 620 ~~~~~~~~~p~~~~V~V~ 637 (813)
...|+++.+.|.
T Consensus 149 ------~~R~aHih~~v~ 160 (226)
T COG3485 149 ------MWRPAHIHFSVF 160 (226)
T ss_pred ------cCccceeEEEEe
Confidence 123556667664
No 41
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=95.95 E-value=0.017 Score=56.77 Aligned_cols=65 Identities=22% Similarity=0.417 Sum_probs=50.1
Q ss_pred ceEEEEEEccCCCCCCccceEEEEEcCc-----------------cceeeeEecCCceEEeCccCCeeEEEEEeeccccc
Q 003526 470 SQISVRIYSKDDAGEPIPSVLLSLSGDD-----------------GYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAF 532 (813)
Q Consensus 470 ~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~-----------------~~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~ey~f 532 (813)
-.|.|+|+|.+ |.|+++|.|.+...+ ..|....||++|+|.|..+.||.|.+ .
T Consensus 12 l~l~G~V~D~~--g~pv~~A~VeiW~~d~~G~Y~~~~~~~~~~~~~~rg~~~Td~~G~y~f~ti~Pg~Y~~--------~ 81 (146)
T cd00421 12 LTLTGTVLDGD--GCPVPDALVEIWQADADGRYSGQDDSGLDPEFFLRGRQITDADGRYRFRTIKPGPYPI--------G 81 (146)
T ss_pred EEEEEEEECCC--CCCCCCcEEEEEecCCCCccCCcCccccCCCCCCEEEEEECCCcCEEEEEEcCCCCCC--------C
Confidence 35789999986 999999999985322 13667899999999999999999975 3
Q ss_pred cCCeeEEEecCC
Q 003526 533 SPPAQAIELGSG 544 (813)
Q Consensus 533 ~P~s~~V~V~~G 544 (813)
.|++..+.|...
T Consensus 82 R~~HiH~~V~~~ 93 (146)
T cd00421 82 RPPHIHFKVFAP 93 (146)
T ss_pred CCCEEEEEEECC
Confidence 356666666543
No 42
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators. A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].
Probab=95.94 E-value=0.031 Score=53.32 Aligned_cols=55 Identities=25% Similarity=0.469 Sum_probs=43.7
Q ss_pred ccceEEEEEcCccceeeeEecCCceEEeCccCCeeEEEEEeeccccccCCeeEEEec
Q 003526 486 IPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELG 542 (813)
Q Consensus 486 l~Gv~vsLsg~~~~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~ey~f~P~s~~V~V~ 542 (813)
.+...|.|.++..-+..+....||.|.|.+|++|+|.|.+...+|.|.| ..|+|.
T Consensus 7 ~~~t~V~L~~g~~~~~~~~v~~dG~F~f~~Vp~GsY~L~V~s~~~~F~~--~RVdV~ 61 (123)
T PF09430_consen 7 PSSTRVTLNGGQYRPISAFVRSDGSFVFHNVPPGSYLLEVHSPDYVFPP--YRVDVS 61 (123)
T ss_pred CCCEEEEEeCCCccceEEEecCCCEEEeCCCCCceEEEEEECCCccccC--EEEEEe
Confidence 4578888877632234578899999999999999999999999999987 444444
No 43
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=95.79 E-value=0.02 Score=53.78 Aligned_cols=59 Identities=25% Similarity=0.330 Sum_probs=46.5
Q ss_pred eEEEEEEccCCCCCCccceEEEEEcCcc----ceeeeEecCCceEE-----eCccCCeeEEEEEeeccc
Q 003526 471 QISVRIYSKDDAGEPIPSVLLSLSGDDG----YRNNSVSWAGGSFH-----FDNLFPGNFYLRPLLKEY 530 (813)
Q Consensus 471 ~I~g~V~d~~~~g~Pl~Gv~vsLsg~~~----~r~~~~Td~~G~f~-----f~~L~PG~Y~v~~~~~ey 530 (813)
.|+..|.|.. .|.|.+|+.|+|...++ ...+.+||+||+.. -..+.||.|.|+....+|
T Consensus 2 ~lstHVLDt~-~G~PAagv~V~L~~~~~~~~~~i~~~~Tn~DGR~~~~l~~~~~~~~G~Y~l~F~~g~Y 69 (112)
T TIGR02962 2 PLSTHVLDTT-SGKPAAGVPVTLYRLDGSGWTPLAEGVTNADGRCPDLLPEGETLAAGIYKLRFDTGDY 69 (112)
T ss_pred CceEEEEeCC-CCccCCCCEEEEEEecCCCeEEEEEEEECCCCCCcCcccCcccCCCeeEEEEEEhhhh
Confidence 4778899984 69999999999975322 23467899999987 356789999999877765
No 44
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=95.73 E-value=0.022 Score=64.78 Aligned_cols=75 Identities=16% Similarity=0.267 Sum_probs=54.2
Q ss_pred EEEEEEEEcCCCCccCccEEEEEeCCCceeeeeEecCceeEEEcCCCCCCeEEEEEEeecCCCCcceeccCCceEEEEec
Q 003526 558 YSATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVG 637 (813)
Q Consensus 558 ~sv~G~V~~~~G~p~~gv~V~a~~~~~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~~~~~~~~~~~~~~p~~~~V~V~ 637 (813)
..|.|.|+|.+|.|+++|+|.+.+.. ...+|.++|-| .|=|+|| +|+|++.++. . .|....|.|.
T Consensus 329 ~GikG~V~d~~g~~i~~a~i~v~g~~----~~v~t~~~Gdy-wRll~pG-~y~v~~~a~g---y------~~~~~~~~v~ 393 (405)
T cd03869 329 RGIKGVVRDKTGKGIPNAIISVEGIN----HDIRTASDGDY-WRLLNPG-EYRVTAHAEG---Y------TSSTKNCEVG 393 (405)
T ss_pred cCceEEEECCCCCcCCCcEEEEecCc----cceeeCCCCce-EEecCCc-eEEEEEEecC---C------CcccEEEEEc
Confidence 35899999999999999999997653 34566777776 3448899 6999999852 2 2446677776
Q ss_pred Cc-cccCceEE
Q 003526 638 SG-DIKGLDFL 647 (813)
Q Consensus 638 ~~-dv~gv~f~ 647 (813)
.+ ...-+||+
T Consensus 394 ~~~~~~~~~f~ 404 (405)
T cd03869 394 YEMGPTQCNFT 404 (405)
T ss_pred CCCCceeeccC
Confidence 44 44555553
No 45
>KOG2649 consensus Zinc carboxypeptidase [General function prediction only]
Probab=95.68 E-value=0.034 Score=63.29 Aligned_cols=78 Identities=21% Similarity=0.342 Sum_probs=61.1
Q ss_pred EEEEEEEcCCCCccCccEEEEEeCCCceeeeeEecCceeEEEcCCCCCCeEEEEEEeecCCCCcceeccCCceEEEEecC
Q 003526 559 SATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGS 638 (813)
Q Consensus 559 sv~G~V~~~~G~p~~gv~V~a~~~~~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~~~~~~~~~~~~~~p~~~~V~V~~ 638 (813)
.|.|-|+|.+|.|+++|+|.+.+.. ...+|..+|-|- |=|.|| .|.|++.+++ ..|...+|.|..
T Consensus 379 GIkG~V~D~~G~~I~NA~IsV~gin----Hdv~T~~~GDYW-RLL~PG-~y~vta~A~G---------y~~~tk~v~V~~ 443 (500)
T KOG2649|consen 379 GIKGLVFDDTGNPIANATISVDGIN----HDVTTAKEGDYW-RLLPPG-KYIITASAEG---------YDPVTKTVTVPP 443 (500)
T ss_pred ccceeEEcCCCCccCceEEEEecCc----CceeecCCCceE-EeeCCc-ceEEEEecCC---------CcceeeEEEeCC
Confidence 3889999999999999999997654 456777777663 338899 6999999863 236678888887
Q ss_pred ccccCceEEEeec
Q 003526 639 GDIKGLDFLVFEQ 651 (813)
Q Consensus 639 ~dv~gv~f~~~~~ 651 (813)
....-+||++-+.
T Consensus 444 ~~a~~~df~L~~~ 456 (500)
T KOG2649|consen 444 DRAARVNFTLQRS 456 (500)
T ss_pred CCccceeEEEecC
Confidence 7777788886654
No 46
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=95.49 E-value=0.085 Score=48.24 Aligned_cols=52 Identities=21% Similarity=0.284 Sum_probs=42.9
Q ss_pred EEEcC-CCCccCccEEEEEe-CCCceeeeeEecCceeEEEcCCCCCCeEEEEEEee
Q 003526 563 TITLL-SGQPKDGVSVEARS-ESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKK 616 (813)
Q Consensus 563 ~V~~~-~G~p~~gv~V~a~~-~~~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~~ 616 (813)
.|+++ +|+|++||.|++++ .++....+.+||++|..+|....+. +.+.+++.
T Consensus 18 ~v~~L~tg~Pv~ga~V~l~~~~~~~~l~~g~TD~~G~a~~~~~~~~--~~viA~~~ 71 (97)
T PF11974_consen 18 WVTSLSTGKPVAGAEVELYDSRNGQVLASGKTDADGFASFDSTKKP--FLVIARKG 71 (97)
T ss_pred EEeeCCCCCccCCCEEEEEECCCCcEeeeeeeCCCceEEecCCCCC--EEEEEEEC
Confidence 35555 69999999999998 7777889999999999999998544 67777653
No 47
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=95.19 E-value=0.084 Score=49.58 Aligned_cols=59 Identities=24% Similarity=0.259 Sum_probs=44.7
Q ss_pred EEEEEEcC-CCCccCccEEEEEeCCC---ceeeeeEecCceeEE-----EcCCCCCCeEEEEEEeecCC
Q 003526 560 ATGTITLL-SGQPKDGVSVEARSESK---GYYEETVTDTSGSYR-----LRGLHPDTTYVIKVVKKDGF 619 (813)
Q Consensus 560 v~G~V~~~-~G~p~~gv~V~a~~~~~---~~~~~a~TD~~G~fr-----~~gL~PG~~Y~V~v~~~~~~ 619 (813)
++=.|.|. .|+|.+||.|.+...++ ....++.||+||+.. -..+.|| .|+|.....+.|
T Consensus 3 lstHVLDt~~G~PAagv~V~L~~~~~~~~~~i~~~~Tn~DGR~~~~l~~~~~~~~G-~Y~l~F~~g~Yf 70 (112)
T TIGR02962 3 LSTHVLDTTSGKPAAGVPVTLYRLDGSGWTPLAEGVTNADGRCPDLLPEGETLAAG-IYKLRFDTGDYF 70 (112)
T ss_pred ceEEEEeCCCCccCCCCEEEEEEecCCCeEEEEEEEECCCCCCcCcccCcccCCCe-eEEEEEEhhhhh
Confidence 34456664 69999999999986432 256688999999997 4667899 699999875443
No 48
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=95.01 E-value=0.14 Score=48.19 Aligned_cols=59 Identities=24% Similarity=0.319 Sum_probs=45.9
Q ss_pred eEEEEEEccCCCCCCccceEEEEEcCcc----ceeeeEecCCceEEe-----CccCCeeEEEEEeeccc
Q 003526 471 QISVRIYSKDDAGEPIPSVLLSLSGDDG----YRNNSVSWAGGSFHF-----DNLFPGNFYLRPLLKEY 530 (813)
Q Consensus 471 ~I~g~V~d~~~~g~Pl~Gv~vsLsg~~~----~r~~~~Td~~G~f~f-----~~L~PG~Y~v~~~~~ey 530 (813)
.|+..|.|.. .|.|.+|+.|+|...++ .....+||+||+..- ..+.+|.|.|+....+|
T Consensus 2 ~lstHVLDt~-~G~PAagv~V~L~~~~~~~~~~i~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~~Y 69 (112)
T cd05822 2 PLSTHVLDTA-TGKPAAGVAVTLYRLDGNGWTLLATGVTNADGRCDDLLPPGAQLAAGTYKLTFDTGAY 69 (112)
T ss_pred CceeEEEeCC-CCcccCCCEEEEEEecCCCeEEEEEEEECCCCCccCcccccccCCCeeEEEEEEhhhh
Confidence 4677899874 69999999999975432 245678999999863 35789999999877665
No 49
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=94.96 E-value=0.075 Score=54.26 Aligned_cols=74 Identities=20% Similarity=0.395 Sum_probs=49.2
Q ss_pred eceEEEEEEccCCCCCCccceEEEEEcCc-----------------cceeeeEecCCceEEeCccCCeeEEEEE------
Q 003526 469 LSQISVRIYSKDDAGEPIPSVLLSLSGDD-----------------GYRNNSVSWAGGSFHFDNLFPGNFYLRP------ 525 (813)
Q Consensus 469 l~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~-----------------~~r~~~~Td~~G~f~f~~L~PG~Y~v~~------ 525 (813)
...|.|+|+|.+ |+||+||.|.+--.+ .+|....||++|+|.|..+.||.|.+..
T Consensus 29 ~l~l~G~V~D~~--g~Pv~~A~veiWqada~G~Ys~~~~~~~~~~~~~rG~~~Td~~G~y~f~Ti~Pg~Y~~~~dG~~g~ 106 (183)
T PF00775_consen 29 PLVLHGRVIDTD--GKPVPGALVEIWQADADGRYSGQDPGSDQPDFNLRGRFRTDADGRYSFRTIKPGPYPIPDDGPVGF 106 (183)
T ss_dssp EEEEEEEEEETT--SSB-TTEEEEEEE--TTS--TTTBTTSSSSTTTTEEEEEECTTSEEEEEEE----EEESTTSHHHH
T ss_pred EEEEEEEEECCC--CCCCCCcEEEEEecCCCCccccccccccccCCCcceEEecCCCCEEEEEeeCCCCCCCCCccHHHH
Confidence 445789999975 999999999984211 2567789999999999999999997642
Q ss_pred ---eeccccccCCeeEEEecCC
Q 003526 526 ---LLKEYAFSPPAQAIELGSG 544 (813)
Q Consensus 526 ---~~~ey~f~P~s~~V~V~~G 544 (813)
.+.-+...|++..+.|...
T Consensus 107 ll~~~g~~~~Rp~HIH~~v~~~ 128 (183)
T PF00775_consen 107 LLRALGRHPWRPAHIHFKVSAP 128 (183)
T ss_dssp HHHHTTTTEEE-SEEEEEEEET
T ss_pred HHhhhccCCCcCCeEEEEEecC
Confidence 1122455677777777643
No 50
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators. A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].
Probab=94.88 E-value=0.079 Score=50.54 Aligned_cols=54 Identities=24% Similarity=0.428 Sum_probs=38.8
Q ss_pred CceEEEEEEcCcccccCcceeeEEEecCCceEEEeecCCccEEEEEEeeccccccCCCCeEEEeeEEEEE
Q 003526 119 PLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVD 188 (813)
Q Consensus 119 ~~v~VtL~~~~~~~~~~~~~~~~~~t~~~g~f~F~~VlPG~Y~v~v~~~~~~~~~~~~~wcw~~~~~~V~ 188 (813)
++..|+|.. +. .+.-.+....+|+|.|.||.||+|.|+|. +.++.|.+-.++|.
T Consensus 8 ~~t~V~L~~--g~-----~~~~~~~v~~dG~F~f~~Vp~GsY~L~V~---------s~~~~F~~~RVdV~ 61 (123)
T PF09430_consen 8 SSTRVTLNG--GQ-----YRPISAFVRSDGSFVFHNVPPGSYLLEVH---------SPDYVFPPYRVDVS 61 (123)
T ss_pred CCEEEEEeC--CC-----ccceEEEecCCCEEEeCCCCCceEEEEEE---------CCCccccCEEEEEe
Confidence 456788822 21 12223445678999999999999999998 67889988555555
No 51
>smart00095 TR_THY Transthyretin.
Probab=94.84 E-value=0.22 Score=47.41 Aligned_cols=97 Identities=14% Similarity=0.188 Sum_probs=66.7
Q ss_pred eceEEEEEEccCCCCCCccceEEEEEcCc--c---ceeeeEecCCceEE--e--CccCCeeEEEEEeecccc-------c
Q 003526 469 LSQISVRIYSKDDAGEPIPSVLLSLSGDD--G---YRNNSVSWAGGSFH--F--DNLFPGNFYLRPLLKEYA-------F 532 (813)
Q Consensus 469 l~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~--~---~r~~~~Td~~G~f~--f--~~L~PG~Y~v~~~~~ey~-------f 532 (813)
.+.|+..|.|.. .|.|.+|+.|+|...+ + .....+||+||+.. + ..+.+|.|.|+....+|- |
T Consensus 3 ~~plTtHVLDt~-~G~PAagv~V~L~~~~~~~~w~~la~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~tg~Yf~~~~~~~F 81 (121)
T smart00095 3 KCPLMVKVLDAV-RGSPAVNVAVKVFKKTEEGTWEPFASGKTNESGEIHELTTDEKFVEGLYKVEFDTKSYWKALGISPF 81 (121)
T ss_pred CCCeEEEEEECC-CCccCCCCEEEEEEeCCCCceEEEEEEecCCCccccCccCcccccceEEEEEEehhHhHhhcCCCCC
Confidence 356888999984 6999999999997533 2 23567899999984 2 356799999998766642 3
Q ss_pred cCC-eeEEEecC--CceEEEEEEEEEeeEEEEEEEEc
Q 003526 533 SPP-AQAIELGS--GESREVIFQATRVAYSATGTITL 566 (813)
Q Consensus 533 ~P~-s~~V~V~~--G~~~~v~~~~~r~~~sv~G~V~~ 566 (813)
.|. ...+.|.+ .++-.|.+...+-+||-+-.|.+
T Consensus 82 ~p~V~V~F~i~d~~~~HYHVPLLlSP~~YST~~~~~~ 118 (121)
T smart00095 82 HEYADVVFTANDSGHRHYTIAALLSPYSYSTTAVVSN 118 (121)
T ss_pred CceEEEEEEECCCCCCCeEECeEecCCcceeEEEecc
Confidence 332 23345544 25677777776777777654443
No 52
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=94.83 E-value=0.052 Score=56.85 Aligned_cols=52 Identities=27% Similarity=0.381 Sum_probs=40.9
Q ss_pred EEEEEEEcCCCCccCccEEEEEeCC--Cc-----------------eeeeeEecCceeEEEcCCCCCCeEEE
Q 003526 559 SATGTITLLSGQPKDGVSVEARSES--KG-----------------YYEETVTDTSGSYRLRGLHPDTTYVI 611 (813)
Q Consensus 559 sv~G~V~~~~G~p~~gv~V~a~~~~--~~-----------------~~~~a~TD~~G~fr~~gL~PG~~Y~V 611 (813)
.+.|+|.|.+|+|+++|.|++=-.+ +. ......||++|+|+|+-+.||. |.+
T Consensus 67 ~l~G~V~D~~G~PV~~A~VEIWQad~~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~Pg~-Yp~ 137 (220)
T cd03464 67 IVHGRVLDEDGRPVPNTLVEIWQANAAGRYRHKRDQHDAPLDPNFGGAGRTLTDDDGYYRFRTIKPGA-YPW 137 (220)
T ss_pred EEEEEEECCCCCCCCCCEEEEEecCCCCcccCccCCcccccCCCCCCEEEEEECCCccEEEEEECCCC-ccC
Confidence 4889999999999999999964211 10 1235689999999999999995 754
No 53
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=94.81 E-value=0.035 Score=60.06 Aligned_cols=52 Identities=23% Similarity=0.383 Sum_probs=41.4
Q ss_pred EEEEEEEcCCCCccCccEEEEEeCC--Cc------------eeeeeEecCceeEEEcCCCCCCeEEE
Q 003526 559 SATGTITLLSGQPKDGVSVEARSES--KG------------YYEETVTDTSGSYRLRGLHPDTTYVI 611 (813)
Q Consensus 559 sv~G~V~~~~G~p~~gv~V~a~~~~--~~------------~~~~a~TD~~G~fr~~gL~PG~~Y~V 611 (813)
.+.|+|+|.+|+|++||.|++=-.+ +. ......||++|+|+|+-+.||. |-|
T Consensus 134 ~v~G~V~D~~G~Pv~gA~VdiWqada~G~Ys~~~~~~~~~~lRGr~~TDadG~y~F~TI~Pg~-Ypi 199 (281)
T TIGR02438 134 VFSGQVTDLDGNGLAGAKVELWHADDDGFYSQFAPGIPEWNLRGTIIADDEGRFEITTMQPAP-YQI 199 (281)
T ss_pred EEEEEEEcCCCCCcCCCEEEEEecCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCC-cCC
Confidence 4889999999999999999973211 11 2346789999999999999995 864
No 54
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates. TTR distributes the two thyroid hormones T3 (3,5,3'-triiodo-L-thyronine) and T4 (Thyroxin, or 3,5,3',5'-tetraiodo-L-thyronine), as well as retinol (vitamin A) through the formation of a macromolecular complex that includes each of these as well as retinol-binding protein. Misfolded forms of TTR are implicated in the amyloid diseases familial amyloidotic polyneuropathy and senile systemic amyloidosis. TTR forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits, which differ in their ligand binding affinity. A negative cooperativity has been observed for the binding of T4 and other TTR ligands. A fraction of plasma TTR is carried in high density lipoproteins by bindi
Probab=94.77 E-value=0.2 Score=47.69 Aligned_cols=95 Identities=15% Similarity=0.194 Sum_probs=64.9
Q ss_pred eceEEEEEEccCCCCCCccceEEEEEcCc--c---ceeeeEecCCceEE--e--CccCCeeEEEEEeecccc-------c
Q 003526 469 LSQISVRIYSKDDAGEPIPSVLLSLSGDD--G---YRNNSVSWAGGSFH--F--DNLFPGNFYLRPLLKEYA-------F 532 (813)
Q Consensus 469 l~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~--~---~r~~~~Td~~G~f~--f--~~L~PG~Y~v~~~~~ey~-------f 532 (813)
.+.|+..|.|.. .|.|.+|+.|.|...+ + .....+||+||+.. + ..+.+|.|.|+....+|- |
T Consensus 6 ~~~ittHVLDt~-~G~PAaGV~V~L~~~~~~~~w~~l~~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~tg~Yf~~~~~~~F 84 (121)
T cd05821 6 KCPLMVKVLDAV-RGSPAANVAVKVFKKTADGSWEPFASGKTTETGEIHGLTTDEQFTEGVYKVEFDTKAYWKKLGISPF 84 (121)
T ss_pred CCCcEEEEEECC-CCccCCCCEEEEEEecCCCceEEEEEEEECCCCCCCCccCccccCCeeEEEEEehhHhhhhcCCCCC
Confidence 356788999984 6999999999997532 2 23568899999985 2 246789999998776652 3
Q ss_pred cCC-eeEEEecC--CceEEEEEEEEEeeEEEEEEE
Q 003526 533 SPP-AQAIELGS--GESREVIFQATRVAYSATGTI 564 (813)
Q Consensus 533 ~P~-s~~V~V~~--G~~~~v~~~~~r~~~sv~G~V 564 (813)
.|. ...+.|.+ +++-.|.+-..+-+||-+..|
T Consensus 85 ~p~V~I~F~i~d~~~~HYHVPLLlSP~gYST~~~~ 119 (121)
T cd05821 85 HEYAEVVFTANDSGHRHYTIAALLSPYSYSTTAVV 119 (121)
T ss_pred CceEEEEEEECCCCCCCeEeCeEecCCcceeEEEe
Confidence 331 22344543 256777777666677766444
No 55
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=94.74 E-value=0.067 Score=54.59 Aligned_cols=53 Identities=26% Similarity=0.421 Sum_probs=37.2
Q ss_pred EEEEEEEEcCCCCccCccEEEEEeCC--C--------------ceeeeeEecCceeEEEcCCCCCCeEEE
Q 003526 558 YSATGTITLLSGQPKDGVSVEARSES--K--------------GYYEETVTDTSGSYRLRGLHPDTTYVI 611 (813)
Q Consensus 558 ~sv~G~V~~~~G~p~~gv~V~a~~~~--~--------------~~~~~a~TD~~G~fr~~gL~PG~~Y~V 611 (813)
+.+.|+|.|.+|+|++||.|++=-.+ + .......||++|+|.|+.+.||. |.+
T Consensus 30 l~l~G~V~D~~g~Pv~~A~veiWqada~G~Ys~~~~~~~~~~~~~rG~~~Td~~G~y~f~Ti~Pg~-Y~~ 98 (183)
T PF00775_consen 30 LVLHGRVIDTDGKPVPGALVEIWQADADGRYSGQDPGSDQPDFNLRGRFRTDADGRYSFRTIKPGP-YPI 98 (183)
T ss_dssp EEEEEEEEETTSSB-TTEEEEEEE--TTS--TTTBTTSSSSTTTTEEEEEECTTSEEEEEEE-----EEE
T ss_pred EEEEEEEECCCCCCCCCcEEEEEecCCCCccccccccccccCCCcceEEecCCCCEEEEEeeCCCC-CCC
Confidence 34889999999999999999973210 1 13356789999999999999994 864
No 56
>cd05469 Transthyretin_like Transthyretin_like. This domain is present in the transthyretin-like protein (TLP) family which includes transthyretin (TTR) and a transthyretin-related protein called 5-hydroxyisourate hydrolase (HIUase). TTR and HIUase are homotetrameric proteins with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits. TTR transports thyroid hormones and retinol in the blood serum of vertebrates while HIUase catalyzes the second step in a three-step ureide pathway. TTRs are highly conserved and found only in vertebrates while the HIUases are found in a wide range of bacterial, plant, fungal, slime mold and vertebrate organisms.
Probab=94.63 E-value=0.21 Score=47.01 Aligned_cols=90 Identities=14% Similarity=0.233 Sum_probs=58.9
Q ss_pred ceEEEEEEccCCCCCCccceEEEEEcCc--c---ceeeeEecCCceEEe----CccCCeeEEEEEeecccc-------cc
Q 003526 470 SQISVRIYSKDDAGEPIPSVLLSLSGDD--G---YRNNSVSWAGGSFHF----DNLFPGNFYLRPLLKEYA-------FS 533 (813)
Q Consensus 470 ~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~--~---~r~~~~Td~~G~f~f----~~L~PG~Y~v~~~~~ey~-------f~ 533 (813)
|.|+..|.|.. .|.|.+|+.|.|...+ + .....+||+||+..= ..+.+|.|.|+....+|- |.
T Consensus 1 ~~lStHVLDt~-~G~PAagv~V~L~~~~~~~~w~~l~~~~Tn~DGR~~~~l~~~~~~~G~Y~l~F~t~~Yf~~~~~~~F~ 79 (113)
T cd05469 1 CPLMVKVLDAV-RGSPAANVAIKVFRKTADGSWEIFATGKTNEDGELHGLITEEEFXAGVYRVEFDTKSYWKALGITPFH 79 (113)
T ss_pred CCceEEEEeCC-CCccCCCCEEEEEEecCCCceEEEEEEEECCCCCccCccccccccceEEEEEEehHHhHhhCCCCCCc
Confidence 45788999984 6999999999997532 1 235678999999852 357899999998776651 33
Q ss_pred CC-eeEEEecC--CceEEEEEEEEEeeEEE
Q 003526 534 PP-AQAIELGS--GESREVIFQATRVAYSA 560 (813)
Q Consensus 534 P~-s~~V~V~~--G~~~~v~~~~~r~~~sv 560 (813)
|. ...+.|.+ .++-.|.+...+-+||.
T Consensus 80 p~V~i~F~v~d~~~~HYHvPLLlSP~gYST 109 (113)
T cd05469 80 EYAEVVFTANDSGHRHYTIALLLSPFSYST 109 (113)
T ss_pred ceEEEEEEECCCCCCCEEeCEEecCCeeee
Confidence 31 22334433 34555555554444443
No 57
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=94.59 E-value=0.045 Score=58.17 Aligned_cols=52 Identities=29% Similarity=0.452 Sum_probs=41.0
Q ss_pred EEEEEEEcCCCCccCccEEEEEeCC--C------------ceeeeeEecCceeEEEcCCCCCCeEEE
Q 003526 559 SATGTITLLSGQPKDGVSVEARSES--K------------GYYEETVTDTSGSYRLRGLHPDTTYVI 611 (813)
Q Consensus 559 sv~G~V~~~~G~p~~gv~V~a~~~~--~------------~~~~~a~TD~~G~fr~~gL~PG~~Y~V 611 (813)
.+.|+|+|.+|+|++||.|++=-.+ + .....-.||++|+|+|+-+.||. |-|
T Consensus 101 ~l~G~V~D~~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~RG~~~Td~~G~y~F~Ti~P~~-Ypi 166 (247)
T cd03462 101 LFRGTVKDLAGAPVAGAVIDVWHSTPDGKYSGFHPNIPEDYYRGKIRTDEDGRYEVRTTVPVP-YQI 166 (247)
T ss_pred EEEEEEEcCCCCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCC-cCC
Confidence 4889999999999999999974211 1 01235789999999999999995 854
No 58
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=94.46 E-value=0.06 Score=57.29 Aligned_cols=52 Identities=33% Similarity=0.491 Sum_probs=41.3
Q ss_pred EEEEEEEcCCCCccCccEEEEEeCC--C------------ceeeeeEecCceeEEEcCCCCCCeEEE
Q 003526 559 SATGTITLLSGQPKDGVSVEARSES--K------------GYYEETVTDTSGSYRLRGLHPDTTYVI 611 (813)
Q Consensus 559 sv~G~V~~~~G~p~~gv~V~a~~~~--~------------~~~~~a~TD~~G~fr~~gL~PG~~Y~V 611 (813)
.+.|+|+|.+|.|++||.|++=-.+ + .....-.||++|+|+|+-+.||. |-|
T Consensus 100 ~v~G~V~D~~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~F~Ti~P~~-Ypi 165 (246)
T TIGR02465 100 LIRGTVRDLSGTPVAGAVIDVWHSTPDGKYSGFHDNIPDDYYRGKLVTAADGSYEVRTTMPVP-YQI 165 (246)
T ss_pred EEEEEEEcCCCCCcCCcEEEEECCCCCCCCCCCCCCCCCCCCeEEEEECCCCCEEEEEECCCC-CCC
Confidence 4889999999999999999974211 1 12246789999999999999995 854
No 59
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=94.45 E-value=0.068 Score=56.00 Aligned_cols=52 Identities=27% Similarity=0.400 Sum_probs=40.7
Q ss_pred EEEEEEEcCCCCccCccEEEEEeCC--Cc-----------------eeeeeEecCceeEEEcCCCCCCeEEE
Q 003526 559 SATGTITLLSGQPKDGVSVEARSES--KG-----------------YYEETVTDTSGSYRLRGLHPDTTYVI 611 (813)
Q Consensus 559 sv~G~V~~~~G~p~~gv~V~a~~~~--~~-----------------~~~~a~TD~~G~fr~~gL~PG~~Y~V 611 (813)
.+.|+|.|.+|+|+++|.|++=-.+ +. ......||++|+|+|+-+.||. |.+
T Consensus 62 ~l~G~V~D~~g~PV~~A~VEIWQada~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~PG~-Y~~ 132 (220)
T TIGR02422 62 IVHGRVLDEDGRPVPNTLVEVWQANAAGRYRHKNDQYLAPLDPNFGGVGRTLTDSDGYYRFRTIKPGP-YPW 132 (220)
T ss_pred EEEEEEECCCCCCCCCCEEEEEecCCCCcccCccCccccccCCCCCCEEEEEECCCccEEEEEECCCC-ccC
Confidence 4889999999999999999964211 10 1235779999999999999995 754
No 60
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=94.35 E-value=0.07 Score=54.53 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=40.6
Q ss_pred EEEEEEEEcCCCCccCccEEEEEeCC--C------c----------eeeeeEecCceeEEEcCCCCCCeEEE
Q 003526 558 YSATGTITLLSGQPKDGVSVEARSES--K------G----------YYEETVTDTSGSYRLRGLHPDTTYVI 611 (813)
Q Consensus 558 ~sv~G~V~~~~G~p~~gv~V~a~~~~--~------~----------~~~~a~TD~~G~fr~~gL~PG~~Y~V 611 (813)
..+.|+|+|.+|+|++||.|++=-.+ + . ......||++|+|+|+-+.||. |-.
T Consensus 37 l~l~G~V~D~~g~Pi~gA~VeiWqad~~G~Y~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~Ti~Pg~-Y~~ 107 (185)
T cd03463 37 ITLEGRVYDGDGAPVPDAMLEIWQADAAGRYAHPADSRRRLDPGFRGFGRVATDADGRFSFTTVKPGA-VPG 107 (185)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEcCCCCCccCCcCCcccccCCCCCcEEEEEECCCCCEEEEEEcCCC-cCC
Confidence 34889999999999999999964211 1 0 1124679999999999999995 753
No 61
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=94.31 E-value=0.067 Score=56.92 Aligned_cols=73 Identities=10% Similarity=0.199 Sum_probs=53.5
Q ss_pred eceEEEEEEccCCCCCCccceEEEEEcCc---------------cceeeeEecCCceEEeCccCCeeEEEEE--------
Q 003526 469 LSQISVRIYSKDDAGEPIPSVLLSLSGDD---------------GYRNNSVSWAGGSFHFDNLFPGNFYLRP-------- 525 (813)
Q Consensus 469 l~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~---------------~~r~~~~Td~~G~f~f~~L~PG~Y~v~~-------- 525 (813)
...+.|+|+|.+ |+||+||.|.+-..+ .+|....||++|+|.|..+.||.|-+-.
T Consensus 99 ~l~l~G~V~D~~--G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~RG~~~Td~~G~y~F~Ti~P~~YpiP~dGp~g~lL 176 (247)
T cd03462 99 PLLFRGTVKDLA--GAPVAGAVIDVWHSTPDGKYSGFHPNIPEDYYRGKIRTDEDGRYEVRTTVPVPYQIPNDGPTGALL 176 (247)
T ss_pred EEEEEEEEEcCC--CCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCcCCCCCCcHHHHH
Confidence 345789999875 999999999985321 2466788999999999999999995421
Q ss_pred -eeccccccCCeeEEEecC
Q 003526 526 -LLKEYAFSPPAQAIELGS 543 (813)
Q Consensus 526 -~~~ey~f~P~s~~V~V~~ 543 (813)
.+.-+.+.|++..+.|..
T Consensus 177 ~~~grh~~RpaHIHf~V~a 195 (247)
T cd03462 177 EAMGGHSWRPAHVHFKVRA 195 (247)
T ss_pred HhcccCCCCCCeEEEEEEC
Confidence 112245667777766653
No 62
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=94.24 E-value=0.067 Score=57.25 Aligned_cols=52 Identities=31% Similarity=0.496 Sum_probs=41.4
Q ss_pred EEEEEEEcCCCCccCccEEEEEeCC--C------------ceeeeeEecCceeEEEcCCCCCCeEEE
Q 003526 559 SATGTITLLSGQPKDGVSVEARSES--K------------GYYEETVTDTSGSYRLRGLHPDTTYVI 611 (813)
Q Consensus 559 sv~G~V~~~~G~p~~gv~V~a~~~~--~------------~~~~~a~TD~~G~fr~~gL~PG~~Y~V 611 (813)
-+.|+|+|.+|+|++||.|++=-.+ + .......||++|+|+|+-+.||. |-+
T Consensus 106 ~l~G~V~D~~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~f~Ti~P~~-Ypi 171 (256)
T cd03458 106 FVHGTVTDTDGKPLAGATVDVWHADPDGFYSQQDPDQPEFNLRGKFRTDEDGRYRFRTIRPVP-YPI 171 (256)
T ss_pred EEEEEEEcCCCCCCCCcEEEEEccCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCC-ccC
Confidence 4889999999999999999964211 1 12335789999999999999995 865
No 63
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=94.23 E-value=0.071 Score=56.76 Aligned_cols=72 Identities=15% Similarity=0.289 Sum_probs=52.5
Q ss_pred ceEEEEEEccCCCCCCccceEEEEEcCc---------------cceeeeEecCCceEEeCccCCeeEEEEE---------
Q 003526 470 SQISVRIYSKDDAGEPIPSVLLSLSGDD---------------GYRNNSVSWAGGSFHFDNLFPGNFYLRP--------- 525 (813)
Q Consensus 470 ~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~---------------~~r~~~~Td~~G~f~f~~L~PG~Y~v~~--------- 525 (813)
..|.|+|.|.+ |+||+||.|.+--.+ .+|....||++|+|.|..+.||.|-+-.
T Consensus 99 l~v~G~V~D~~--G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~F~Ti~P~~YpiP~dgp~g~lL~ 176 (246)
T TIGR02465 99 LLIRGTVRDLS--GTPVAGAVIDVWHSTPDGKYSGFHDNIPDDYYRGKLVTAADGSYEVRTTMPVPYQIPDAGPTGALLE 176 (246)
T ss_pred EEEEEEEEcCC--CCCcCCcEEEEECCCCCCCCCCCCCCCCCCCCeEEEEECCCCCEEEEEECCCCCCCCCCCchHHHHH
Confidence 56789999875 999999999985221 2466788999999999999999995421
Q ss_pred eeccccccCCeeEEEecC
Q 003526 526 LLKEYAFSPPAQAIELGS 543 (813)
Q Consensus 526 ~~~ey~f~P~s~~V~V~~ 543 (813)
.+.-+.+.|++..+.|..
T Consensus 177 ~~grh~~RpaHIH~~V~a 194 (246)
T TIGR02465 177 TMGRHSWRPAHVHYKVRA 194 (246)
T ss_pred hcccCCCCCCeEEEEEEC
Confidence 012234567777666654
No 64
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=94.22 E-value=0.13 Score=52.97 Aligned_cols=54 Identities=20% Similarity=0.338 Sum_probs=43.2
Q ss_pred EEEEEEccCCCCCCccceEEEEEcCccc------eeeeEecCCceEEeCccCCeeEEEEEeec
Q 003526 472 ISVRIYSKDDAGEPIPSVLLSLSGDDGY------RNNSVSWAGGSFHFDNLFPGNFYLRPLLK 528 (813)
Q Consensus 472 I~g~V~d~~~~g~Pl~Gv~vsLsg~~~~------r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~ 528 (813)
+.++|.- + |+|++|+.|.+...... .....||++|++.|.-..||.|.|++.+.
T Consensus 153 ~~~~vl~-~--GkPl~~a~V~~~~~~~~~~~~~~~~~~~TD~~G~~~~~~~~~G~wli~a~~~ 212 (215)
T PF10670_consen 153 LPFQVLF-D--GKPLAGAEVEAFSPGGWYDVEHEAKTLKTDANGRATFTLPRPGLWLIRASHK 212 (215)
T ss_pred EEEEEEE-C--CeEcccEEEEEEECCCccccccceEEEEECCCCEEEEecCCCEEEEEEEEEe
Confidence 5677774 3 99999999998654321 45689999999999888999999998754
No 65
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=94.14 E-value=0.088 Score=54.15 Aligned_cols=52 Identities=21% Similarity=0.294 Sum_probs=40.4
Q ss_pred EEEEEEEcCCCCccCccEEEEEeCC--C---------------c--eeeeeEecCceeEEEcCCCCCCeEEE
Q 003526 559 SATGTITLLSGQPKDGVSVEARSES--K---------------G--YYEETVTDTSGSYRLRGLHPDTTYVI 611 (813)
Q Consensus 559 sv~G~V~~~~G~p~~gv~V~a~~~~--~---------------~--~~~~a~TD~~G~fr~~gL~PG~~Y~V 611 (813)
.+.|+|+|.+|+|++||.|++=-.+ + . ......||++|+|+|+-+.||. |..
T Consensus 41 ~l~G~V~D~~g~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~~~f~grGr~~Td~~G~y~f~TI~Pg~-Yp~ 111 (193)
T TIGR02423 41 RLEGRVLDGDGHPVPDALIEIWQADAAGRYNSPADLRAPATDPGFRGWGRTGTDESGEFTFETVKPGA-VPD 111 (193)
T ss_pred EEEEEEECCCCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCCeEEEEECCCCCEEEEEEcCCC-cCC
Confidence 4889999999999999999963211 1 0 1124679999999999999995 874
No 66
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=93.99 E-value=0.088 Score=55.15 Aligned_cols=69 Identities=19% Similarity=0.366 Sum_probs=49.0
Q ss_pred ceEEEEEEccCCCCCCccceEEEEEcCc------------------c--ceeeeEecCCceEEeCccCCeeEEEEEeecc
Q 003526 470 SQISVRIYSKDDAGEPIPSVLLSLSGDD------------------G--YRNNSVSWAGGSFHFDNLFPGNFYLRPLLKE 529 (813)
Q Consensus 470 ~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~------------------~--~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~e 529 (813)
..|.|+|+|.+ |+||+||.|.+...+ . .|....||++|+|.|..+.||.|-+-.- -
T Consensus 66 i~l~G~V~D~~--G~PV~~A~VEIWQad~~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~Pg~Yp~p~~--r 141 (220)
T cd03464 66 IIVHGRVLDED--GRPVPNTLVEIWQANAAGRYRHKRDQHDAPLDPNFGGAGRTLTDDDGYYRFRTIKPGAYPWGNH--P 141 (220)
T ss_pred EEEEEEEECCC--CCCCCCCEEEEEecCCCCcccCccCCcccccCCCCCCEEEEEECCCccEEEEEECCCCccCCCC--C
Confidence 45789999975 999999999984221 0 2456789999999999999999965210 0
Q ss_pred ccccCCeeEEEec
Q 003526 530 YAFSPPAQAIELG 542 (813)
Q Consensus 530 y~f~P~s~~V~V~ 542 (813)
....|++..+.|.
T Consensus 142 ~~~RppHIH~~V~ 154 (220)
T cd03464 142 NAWRPAHIHFSLF 154 (220)
T ss_pred CCCcCCeEEEEEE
Confidence 1234566666554
No 67
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=93.98 E-value=0.096 Score=52.23 Aligned_cols=68 Identities=22% Similarity=0.444 Sum_probs=49.0
Q ss_pred ceEEEEEEccCCCCCCccceEEEEEcCc------------------cc--eeeeEecCCceEEeCccCCeeEEEEEeecc
Q 003526 470 SQISVRIYSKDDAGEPIPSVLLSLSGDD------------------GY--RNNSVSWAGGSFHFDNLFPGNFYLRPLLKE 529 (813)
Q Consensus 470 ~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~------------------~~--r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~e 529 (813)
-.|.|+|.|.+ |+||++|.|.+-..+ .+ |....||++|+|.|..+.||.|-+..
T Consensus 16 l~l~g~V~D~~--g~Pv~~A~veiWqad~~G~Y~~~~~~~~~~~~~~f~~rG~~~Td~~G~~~f~Ti~Pg~Y~~p~---- 89 (158)
T cd03459 16 IILEGRVLDGD--GRPVPDALVEIWQADAAGRYRHPRDSHRAPLDPNFTGFGRVLTDADGRYRFRTIKPGAYPWRN---- 89 (158)
T ss_pred EEEEEEEECCC--CCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCceeEEEECCCCcEEEEEECCCCcCCCC----
Confidence 45789999875 999999999984211 11 34578999999999999999996432
Q ss_pred ccccCCeeEEEecC
Q 003526 530 YAFSPPAQAIELGS 543 (813)
Q Consensus 530 y~f~P~s~~V~V~~ 543 (813)
....|++..+.|..
T Consensus 90 ~~~R~~HIH~~V~~ 103 (158)
T cd03459 90 GAWRAPHIHVSVFA 103 (158)
T ss_pred CCCcCCEEEEEEEC
Confidence 12345666666653
No 68
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=93.97 E-value=0.08 Score=52.78 Aligned_cols=52 Identities=25% Similarity=0.414 Sum_probs=40.4
Q ss_pred EEEEEEEcCCCCccCccEEEEEeCC--C---------------c--eeeeeEecCceeEEEcCCCCCCeEEE
Q 003526 559 SATGTITLLSGQPKDGVSVEARSES--K---------------G--YYEETVTDTSGSYRLRGLHPDTTYVI 611 (813)
Q Consensus 559 sv~G~V~~~~G~p~~gv~V~a~~~~--~---------------~--~~~~a~TD~~G~fr~~gL~PG~~Y~V 611 (813)
-+.|+|.|.+|.|+++|.|++=-.+ + . ......||++|+|+|+-+.||. |.+
T Consensus 17 ~l~g~V~D~~g~Pv~~A~veiWqad~~G~Y~~~~~~~~~~~~~~f~~rG~~~Td~~G~~~f~Ti~Pg~-Y~~ 87 (158)
T cd03459 17 ILEGRVLDGDGRPVPDALVEIWQADAAGRYRHPRDSHRAPLDPNFTGFGRVLTDADGRYRFRTIKPGA-YPW 87 (158)
T ss_pred EEEEEEECCCCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCceeEEEECCCCcEEEEEECCCC-cCC
Confidence 4889999999999999999963211 1 0 1235789999999999999994 763
No 69
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=93.91 E-value=0.2 Score=51.63 Aligned_cols=53 Identities=25% Similarity=0.291 Sum_probs=43.5
Q ss_pred EEEEcCCCCccCccEEEEEeCCCc-----eeeeeEecCceeEEEcCCCCCCeEEEEEEee
Q 003526 562 GTITLLSGQPKDGVSVEARSESKG-----YYEETVTDTSGSYRLRGLHPDTTYVIKVVKK 616 (813)
Q Consensus 562 G~V~~~~G~p~~gv~V~a~~~~~~-----~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~~ 616 (813)
.+|. .+|+|++|+.|.+...+.. .....+||++|.+.|.=..|| .|.|.+...
T Consensus 155 ~~vl-~~GkPl~~a~V~~~~~~~~~~~~~~~~~~~TD~~G~~~~~~~~~G-~wli~a~~~ 212 (215)
T PF10670_consen 155 FQVL-FDGKPLAGAEVEAFSPGGWYDVEHEAKTLKTDANGRATFTLPRPG-LWLIRASHK 212 (215)
T ss_pred EEEE-ECCeEcccEEEEEEECCCccccccceEEEEECCCCEEEEecCCCE-EEEEEEEEe
Confidence 4444 5899999999999876532 166899999999999999999 699999864
No 70
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=93.84 E-value=0.097 Score=54.89 Aligned_cols=69 Identities=19% Similarity=0.362 Sum_probs=48.7
Q ss_pred ceEEEEEEccCCCCCCccceEEEEEcCc------------------c--ceeeeEecCCceEEeCccCCeeEEEEEeecc
Q 003526 470 SQISVRIYSKDDAGEPIPSVLLSLSGDD------------------G--YRNNSVSWAGGSFHFDNLFPGNFYLRPLLKE 529 (813)
Q Consensus 470 ~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~------------------~--~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~e 529 (813)
-.|+|+|+|.+ |+||+||.|.+...+ . .|....||++|+|.|..+.||.|.+.-- .
T Consensus 61 i~l~G~V~D~~--g~PV~~A~VEIWQada~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~PG~Y~~p~~--~ 136 (220)
T TIGR02422 61 IIVHGRVLDED--GRPVPNTLVEVWQANAAGRYRHKNDQYLAPLDPNFGGVGRTLTDSDGYYRFRTIKPGPYPWGNH--H 136 (220)
T ss_pred EEEEEEEECCC--CCCCCCCEEEEEecCCCCcccCccCccccccCCCCCCEEEEEECCCccEEEEEECCCCccCCCC--C
Confidence 34689999975 999999999984211 0 2456789999999999999999965311 0
Q ss_pred ccccCCeeEEEec
Q 003526 530 YAFSPPAQAIELG 542 (813)
Q Consensus 530 y~f~P~s~~V~V~ 542 (813)
....|++..+.|.
T Consensus 137 ~~~R~pHIH~~V~ 149 (220)
T TIGR02422 137 NAWRPAHIHFSLF 149 (220)
T ss_pred CCCcCCeEEEEEE
Confidence 1234556666554
No 71
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=93.79 E-value=0.095 Score=56.73 Aligned_cols=53 Identities=28% Similarity=0.459 Sum_probs=41.9
Q ss_pred EEEEEEEEcCCCCccCccEEEEEeCC--C------------ceeeeeEecCceeEEEcCCCCCCeEEE
Q 003526 558 YSATGTITLLSGQPKDGVSVEARSES--K------------GYYEETVTDTSGSYRLRGLHPDTTYVI 611 (813)
Q Consensus 558 ~sv~G~V~~~~G~p~~gv~V~a~~~~--~------------~~~~~a~TD~~G~fr~~gL~PG~~Y~V 611 (813)
..+.|+|+|.+|.|++||.|++=-.+ + .....-.||++|+|+|+-+.||. |-+
T Consensus 121 l~v~G~V~D~~G~Pv~gA~VeiWqad~~G~Y~~~~~~~~~~~lRGr~~Td~~G~y~F~Ti~Pg~-Ypi 187 (277)
T cd03461 121 CFVHGRVTDTDGKPLPGATVDVWQADPNGLYDVQDPDQPEFNLRGKFRTDEDGRYAFRTLRPTP-YPI 187 (277)
T ss_pred EEEEEEEEcCCCCCcCCcEEEEECcCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCC-cCC
Confidence 34889999999999999999964211 1 12346789999999999999995 875
No 72
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=93.78 E-value=0.091 Score=56.96 Aligned_cols=52 Identities=31% Similarity=0.547 Sum_probs=41.2
Q ss_pred EEEEEEEcCCCCccCccEEEEEeCC--C------------ceeeeeEecCceeEEEcCCCCCCeEEE
Q 003526 559 SATGTITLLSGQPKDGVSVEARSES--K------------GYYEETVTDTSGSYRLRGLHPDTTYVI 611 (813)
Q Consensus 559 sv~G~V~~~~G~p~~gv~V~a~~~~--~------------~~~~~a~TD~~G~fr~~gL~PG~~Y~V 611 (813)
.+.|+|+|.+|+|++||.|++=-.+ + .......||++|+|+|+-+.||. |-|
T Consensus 126 ~l~G~V~D~~G~PI~~A~VeiWqad~~G~Ys~~~~~~~~f~~RGr~~TD~~G~y~F~TI~P~~-Ypi 191 (282)
T cd03460 126 VMHGTVTDTDGKPVPGAKVEVWHANSKGFYSHFDPTQSPFNLRRSIITDADGRYRFRSIMPSG-YGV 191 (282)
T ss_pred EEEEEEECCCCCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCceEEEeCCCCCEEEEEECCCC-CcC
Confidence 4889999999999999999964211 1 02235789999999999999994 864
No 73
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.75 E-value=0.098 Score=54.95 Aligned_cols=70 Identities=19% Similarity=0.374 Sum_probs=50.8
Q ss_pred eEEEEEEccCCCCCCccceEEEEEcCc----------c---------ceeeeEecCCceEEeCccCCeeEEEEEeecccc
Q 003526 471 QISVRIYSKDDAGEPIPSVLLSLSGDD----------G---------YRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYA 531 (813)
Q Consensus 471 ~I~g~V~d~~~~g~Pl~Gv~vsLsg~~----------~---------~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~ey~ 531 (813)
.|+|+|.|.+ |+||+++.|.+-..+ . -|..+.||++|+|.|..+.||.|-..--.. .
T Consensus 74 ~l~G~VlD~~--G~Pv~~A~VEiWQAda~GrY~~~~d~~~~~~~~f~g~Gr~~Td~~G~y~F~Ti~Pg~yp~~~~~~--~ 149 (226)
T COG3485 74 LLEGRVLDGN--GRPVPDALVEIWQADADGRYSHPKDSRLAPLPNFNGRGRTITDEDGEYRFRTIKPGPYPWRNGGP--M 149 (226)
T ss_pred EEEEEEECCC--CCCCCCCEEEEEEcCCCCcccCccccccCcCccccceEEEEeCCCceEEEEEeecccccCCCCCC--c
Confidence 3689999986 999999999984211 0 244678999999999999999996553211 2
Q ss_pred ccCCeeEEEecCC
Q 003526 532 FSPPAQAIELGSG 544 (813)
Q Consensus 532 f~P~s~~V~V~~G 544 (813)
..|++..+.|...
T Consensus 150 ~R~aHih~~v~~~ 162 (226)
T COG3485 150 WRPAHIHFSVFAR 162 (226)
T ss_pred CccceeEEEEeCC
Confidence 2466777776543
No 74
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=93.70 E-value=0.11 Score=53.17 Aligned_cols=69 Identities=25% Similarity=0.328 Sum_probs=49.1
Q ss_pred eceEEEEEEccCCCCCCccceEEEEEcCc-----------------c--ceeeeEecCCceEEeCccCCeeEEEEEeecc
Q 003526 469 LSQISVRIYSKDDAGEPIPSVLLSLSGDD-----------------G--YRNNSVSWAGGSFHFDNLFPGNFYLRPLLKE 529 (813)
Q Consensus 469 l~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~-----------------~--~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~e 529 (813)
.-.|.|+|.|.+ |+||+||.|.+...+ . .|....||++|+|.|..+.||.|-. ..
T Consensus 36 ~l~l~G~V~D~~--g~Pi~gA~VeiWqad~~G~Y~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~Ti~Pg~Y~~---~~- 109 (185)
T cd03463 36 RITLEGRVYDGD--GAPVPDAMLEIWQADAAGRYAHPADSRRRLDPGFRGFGRVATDADGRFSFTTVKPGAVPG---RD- 109 (185)
T ss_pred EEEEEEEEECCC--CCCCCCCEEEEEcCCCCCccCCcCCcccccCCCCCcEEEEEECCCCCEEEEEEcCCCcCC---CC-
Confidence 345789999875 999999999984211 1 2345789999999999999999853 11
Q ss_pred ccccCCeeEEEecC
Q 003526 530 YAFSPPAQAIELGS 543 (813)
Q Consensus 530 y~f~P~s~~V~V~~ 543 (813)
....|++..+.|..
T Consensus 110 g~~R~~HIH~~V~~ 123 (185)
T cd03463 110 GAGQAPHINVWVFA 123 (185)
T ss_pred CCCcCCeEEEEEEC
Confidence 11346666666653
No 75
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=93.69 E-value=0.099 Score=56.79 Aligned_cols=52 Identities=29% Similarity=0.453 Sum_probs=41.3
Q ss_pred EEEEEEEcCCCCccCccEEEEEeCC--C------------ceeeeeEecCceeEEEcCCCCCCeEEE
Q 003526 559 SATGTITLLSGQPKDGVSVEARSES--K------------GYYEETVTDTSGSYRLRGLHPDTTYVI 611 (813)
Q Consensus 559 sv~G~V~~~~G~p~~gv~V~a~~~~--~------------~~~~~a~TD~~G~fr~~gL~PG~~Y~V 611 (813)
.+.|+|+|.+|+|++||.|++=-.+ + .......||++|+|+|+-+.||. |-|
T Consensus 130 ~v~G~V~D~~G~PI~gA~VeIWqad~~G~Ys~~~~~~~~~~lRG~~~TD~~G~y~F~TI~P~~-Ypi 195 (285)
T TIGR02439 130 FLHGQVTDADGKPIAGAKVELWHANTKGNYSHFDKSQSEFNLRRTIITDAEGRYRARSIVPSG-YGC 195 (285)
T ss_pred EEEEEEECCCCCCcCCcEEEEEccCCCCCcCCCCCCCCCCCceEEEEECCCCCEEEEEECCCC-CcC
Confidence 4889999999999999999963211 1 12246789999999999999995 864
No 76
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=93.66 E-value=0.1 Score=56.56 Aligned_cols=73 Identities=14% Similarity=0.241 Sum_probs=53.8
Q ss_pred eceEEEEEEccCCCCCCccceEEEEEcCc---------------cceeeeEecCCceEEeCccCCeeEEEEE--------
Q 003526 469 LSQISVRIYSKDDAGEPIPSVLLSLSGDD---------------GYRNNSVSWAGGSFHFDNLFPGNFYLRP-------- 525 (813)
Q Consensus 469 l~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~---------------~~r~~~~Td~~G~f~f~~L~PG~Y~v~~-------- 525 (813)
...|.|+|+|.+ |+||+|+.|.+.-.+ .+|....||++|+|.|..+.||.|-+-.
T Consensus 132 pl~v~G~V~D~~--G~Pv~gA~VdiWqada~G~Ys~~~~~~~~~~lRGr~~TDadG~y~F~TI~Pg~YpiP~dGp~G~lL 209 (281)
T TIGR02438 132 PLVFSGQVTDLD--GNGLAGAKVELWHADDDGFYSQFAPGIPEWNLRGTIIADDEGRFEITTMQPAPYQIPTDGPTGKFI 209 (281)
T ss_pred EEEEEEEEEcCC--CCCcCCCEEEEEecCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCCcCCCCCCchHHHH
Confidence 445789999875 999999999984211 1366789999999999999999996421
Q ss_pred -eeccccccCCeeEEEecC
Q 003526 526 -LLKEYAFSPPAQAIELGS 543 (813)
Q Consensus 526 -~~~ey~f~P~s~~V~V~~ 543 (813)
.+.-+.+.|++..+.|..
T Consensus 210 ~~~Grh~~RpaHIHf~V~a 228 (281)
T TIGR02438 210 AAAGGHPWRPAHLHLKVSA 228 (281)
T ss_pred HhcccCCCCCCEEEEEEEC
Confidence 122355677777777654
No 77
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=93.65 E-value=0.11 Score=55.73 Aligned_cols=73 Identities=15% Similarity=0.274 Sum_probs=54.0
Q ss_pred eceEEEEEEccCCCCCCccceEEEEEcCc---------------cceeeeEecCCceEEeCccCCeeEEEEEe-------
Q 003526 469 LSQISVRIYSKDDAGEPIPSVLLSLSGDD---------------GYRNNSVSWAGGSFHFDNLFPGNFYLRPL------- 526 (813)
Q Consensus 469 l~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~---------------~~r~~~~Td~~G~f~f~~L~PG~Y~v~~~------- 526 (813)
...++|+|+|.+ |+||+||.|.+--.+ ..|....||++|+|.|..+.||.|-+-.-
T Consensus 104 ~l~l~G~V~D~~--G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~f~Ti~P~~Ypip~dGp~g~lL 181 (256)
T cd03458 104 PLFVHGTVTDTD--GKPLAGATVDVWHADPDGFYSQQDPDQPEFNLRGKFRTDEDGRYRFRTIRPVPYPIPPDGPTGELL 181 (256)
T ss_pred EEEEEEEEEcCC--CCCCCCcEEEEEccCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCccCCCCCcHHHHH
Confidence 455789999986 999999999984211 23567889999999999999999965321
Q ss_pred --eccccccCCeeEEEecC
Q 003526 527 --LKEYAFSPPAQAIELGS 543 (813)
Q Consensus 527 --~~ey~f~P~s~~V~V~~ 543 (813)
+.-+.+.|++..+.|..
T Consensus 182 ~~~grh~~RpaHIHf~V~a 200 (256)
T cd03458 182 EALGRHPWRPAHIHFMVSA 200 (256)
T ss_pred HhcccCCCCCCeEEEEEEC
Confidence 12245667777777654
No 78
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=93.56 E-value=0.11 Score=56.52 Aligned_cols=75 Identities=16% Similarity=0.254 Sum_probs=53.8
Q ss_pred eeceEEEEEEccCCCCCCccceEEEEEcCc---------------cceeeeEecCCceEEeCccCCeeEEEEEe------
Q 003526 468 KLSQISVRIYSKDDAGEPIPSVLLSLSGDD---------------GYRNNSVSWAGGSFHFDNLFPGNFYLRPL------ 526 (813)
Q Consensus 468 ~l~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~---------------~~r~~~~Td~~G~f~f~~L~PG~Y~v~~~------ 526 (813)
....|.|+|+|.+ |+||+|+.|.+--.+ ..|....||++|+|.|..+.||.|-+-.-
T Consensus 127 ~pl~v~G~V~D~~--G~PI~gA~VeIWqad~~G~Ys~~~~~~~~~~lRG~~~TD~~G~y~F~TI~P~~YpiP~dGp~g~l 204 (285)
T TIGR02439 127 ETLFLHGQVTDAD--GKPIAGAKVELWHANTKGNYSHFDKSQSEFNLRRTIITDAEGRYRARSIVPSGYGCPPQGPTQQL 204 (285)
T ss_pred cEEEEEEEEECCC--CCCcCCcEEEEEccCCCCCcCCCCCCCCCCCceEEEEECCCCCEEEEEECCCCCcCCCCCcHHHH
Confidence 3455789999876 999999999984221 14567889999999999999999965310
Q ss_pred ---eccccccCCeeEEEecCC
Q 003526 527 ---LKEYAFSPPAQAIELGSG 544 (813)
Q Consensus 527 ---~~ey~f~P~s~~V~V~~G 544 (813)
+.-....|++..+.|...
T Consensus 205 L~~~grh~~RpaHIHf~V~a~ 225 (285)
T TIGR02439 205 LNLLGRHGNRPAHVHFFVSAP 225 (285)
T ss_pred HHhccCCCCCCCeEEEEEecC
Confidence 112345677777666543
No 79
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=93.54 E-value=0.1 Score=56.50 Aligned_cols=73 Identities=16% Similarity=0.335 Sum_probs=52.9
Q ss_pred eceEEEEEEccCCCCCCccceEEEEEcCc---------------cceeeeEecCCceEEeCccCCeeEEEEEe-------
Q 003526 469 LSQISVRIYSKDDAGEPIPSVLLSLSGDD---------------GYRNNSVSWAGGSFHFDNLFPGNFYLRPL------- 526 (813)
Q Consensus 469 l~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~---------------~~r~~~~Td~~G~f~f~~L~PG~Y~v~~~------- 526 (813)
...++|+|+|.+ |+||+|+.|.+.-.+ ..|....||++|+|.|..+.||.|-+-.-
T Consensus 124 pl~l~G~V~D~~--G~PI~~A~VeiWqad~~G~Ys~~~~~~~~f~~RGr~~TD~~G~y~F~TI~P~~YpiP~dGp~g~lL 201 (282)
T cd03460 124 TLVMHGTVTDTD--GKPVPGAKVEVWHANSKGFYSHFDPTQSPFNLRRSIITDADGRYRFRSIMPSGYGVPPGGPTQQLL 201 (282)
T ss_pred EEEEEEEEECCC--CCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCceEEEeCCCCCEEEEEECCCCCcCCCCCcHHHHH
Confidence 345789999886 999999999985221 13566889999999999999999965321
Q ss_pred --eccccccCCeeEEEecC
Q 003526 527 --LKEYAFSPPAQAIELGS 543 (813)
Q Consensus 527 --~~ey~f~P~s~~V~V~~ 543 (813)
+.-..+.|++..+.|..
T Consensus 202 ~~~grh~~RpaHIHf~V~a 220 (282)
T cd03460 202 NALGRHGNRPAHIHFFVSA 220 (282)
T ss_pred HhhcCCCCCCCeEEEEEec
Confidence 11134567777766654
No 80
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=93.51 E-value=0.11 Score=56.23 Aligned_cols=73 Identities=16% Similarity=0.295 Sum_probs=52.8
Q ss_pred eceEEEEEEccCCCCCCccceEEEEEcCc---------------cceeeeEecCCceEEeCccCCeeEEEEEe-------
Q 003526 469 LSQISVRIYSKDDAGEPIPSVLLSLSGDD---------------GYRNNSVSWAGGSFHFDNLFPGNFYLRPL------- 526 (813)
Q Consensus 469 l~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~---------------~~r~~~~Td~~G~f~f~~L~PG~Y~v~~~------- 526 (813)
...+.|+|+|.+ |+||+|+.|.+--.+ ..|....||++|+|.|..+.||.|-+-.-
T Consensus 120 ~l~v~G~V~D~~--G~Pv~gA~VeiWqad~~G~Y~~~~~~~~~~~lRGr~~Td~~G~y~F~Ti~Pg~Ypip~dGp~g~lL 197 (277)
T cd03461 120 PCFVHGRVTDTD--GKPLPGATVDVWQADPNGLYDVQDPDQPEFNLRGKFRTDEDGRYAFRTLRPTPYPIPTDGPVGKLL 197 (277)
T ss_pred EEEEEEEEEcCC--CCCcCCcEEEEECcCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCCcCCCCCCcHHHHH
Confidence 445789999986 999999999985321 24667889999999999999999975310
Q ss_pred --eccccccCCeeEEEecC
Q 003526 527 --LKEYAFSPPAQAIELGS 543 (813)
Q Consensus 527 --~~ey~f~P~s~~V~V~~ 543 (813)
+.-..+.|++..+.|..
T Consensus 198 ~~~grh~~RpaHIHf~V~a 216 (277)
T cd03461 198 KAMGRHPMRPAHIHFMVTA 216 (277)
T ss_pred HhhhccCCCCCeEEEEEEc
Confidence 11133557777766654
No 81
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=93.16 E-value=51 Score=46.03 Aligned_cols=162 Identities=13% Similarity=0.115 Sum_probs=80.2
Q ss_pred cEEEE-ecCcceEEEEeecCCCCCCceEEeCceEEEEeCCCccce--EEEEEEeEEEEEEEec---cCCCCceEEEEEEc
Q 003526 55 NFCFE-VPPGEYRLSAMAATPESSSGILFLPPYADVVVKSPLLNI--EFSQALVNVLGNVACK---ERCGPLVTVTLMRL 128 (813)
Q Consensus 55 ~Fcf~-l~pG~Y~l~v~~~~~e~~~Gl~F~P~~~~v~V~~p~~di--~Fsq~~~sv~G~V~c~---~~c~~~v~VtL~~~ 128 (813)
.+++. ..||.|+|++.++ ++-||. -.+..++|-+|+.++ .++-.++.++..|.-- ..++ +++-+..-.
T Consensus 1661 ~~~vt~~~pG~Y~VtL~aS---N~vG~~--t~s~~i~v~epi~~L~L~aS~~~aavn~~V~fs~~lt~GS-~vty~W~~g 1734 (2740)
T TIGR00864 1661 GAKLNPLEAGPCDIFLQAA---NLLGQA--TADCTIDFLEPAGNLMLQASDNPAAVNALINLSAELAEGS-GLQYRWFLE 1734 (2740)
T ss_pred eeEEecCCCceEEEEEEEe---ecccce--eeEEEEEEEEEcCceEEeccCCcccCCCeEEEEEEecCCC-CcEEEEEEC
Confidence 45653 5699999999987 456664 444455555555444 3333333333333211 1122 333333222
Q ss_pred CcccccCcceeeEEEecCCceEEEeecCCccEEEEEEeeccccccCCCCeEEEeeEEEEEeecCccccee----------
Q 003526 129 GQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVGTNDVKGVE---------- 198 (813)
Q Consensus 129 ~~~~~~~~~~~~~~~t~~~g~f~F~~VlPG~Y~v~v~~~~~~~~~~~~~wcw~~~~~~V~V~~~~~~~~~---------- 198 (813)
++. . ..+.+..-...| =.||.|.|.+... +..-+++.++.|.|.. .+.++.
T Consensus 1735 dG~------s--~~~s~p~~tHtf--~~~G~y~VtVta~--------N~vss~~~s~~V~Vqe-pV~GL~i~~~~~~~~~ 1795 (2740)
T TIGR00864 1735 EGD------D--LETSEPFMSHSF--PSAGLHLVTMKAF--------NELGSANASEEVDVQE-PISGLKIRAADAGEQN 1795 (2740)
T ss_pred CCC------C--cccCCCceEEEc--cCCceEEEEEEEE--------ccccccceeEEEEEEe-ccccceEecCCCCccc
Confidence 221 0 001111112333 3699999999853 2233555566676642 223332
Q ss_pred EEEeceEEEEEeccceeeeEeecCCCeee--eEecccc------eeEeecCCeeeEEEe
Q 003526 199 FVQKGYWLNVISTHDVDAYMTQQDGSHVP--LKVKKGS------QHICVESPGVHNLHF 249 (813)
Q Consensus 199 f~q~Gy~v~v~ssh~~~~~~~~~~~~~~~--~~l~kG~------~~~c~~~~G~Y~~~l 249 (813)
|.-.|..+.+..+ .++|..+. |.+..|. -.+..+.+|.|.++|
T Consensus 1796 ~~~ag~~v~F~a~--------vstGsnVsw~W~f~~g~s~~gk~v~~Tf~~aG~ytV~L 1846 (2740)
T TIGR00864 1796 FFAADSSVCFQGE--------LATGTNVSWCWAIDGGSSKMGKHACMTFPDAGTFAIRL 1846 (2740)
T ss_pred ceecCcEEEEEEE--------ccCCCeeEEEEEeCCCCccccceeEEecCCCeEEEEEE
Confidence 3445555554432 13444443 3333322 146678899999998
No 82
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=93.05 E-value=0.16 Score=52.27 Aligned_cols=69 Identities=22% Similarity=0.447 Sum_probs=49.5
Q ss_pred eceEEEEEEccCCCCCCccceEEEEEcCc------------------cc--eeeeEecCCceEEeCccCCeeEEEEEeec
Q 003526 469 LSQISVRIYSKDDAGEPIPSVLLSLSGDD------------------GY--RNNSVSWAGGSFHFDNLFPGNFYLRPLLK 528 (813)
Q Consensus 469 l~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~------------------~~--r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~ 528 (813)
.-.|.|+|+|.+ |+||+||.|.+-..+ .+ |....||++|+|.|..+.||.|-.. .
T Consensus 39 ~l~l~G~V~D~~--g~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~~~f~grGr~~Td~~G~y~f~TI~Pg~Yp~~---~ 113 (193)
T TIGR02423 39 RIRLEGRVLDGD--GHPVPDALIEIWQADAAGRYNSPADLRAPATDPGFRGWGRTGTDESGEFTFETVKPGAVPDR---D 113 (193)
T ss_pred EEEEEEEEECCC--CCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCCeEEEEECCCCCEEEEEEcCCCcCCC---C
Confidence 345789999875 999999999984211 11 3456899999999999999999652 1
Q ss_pred cccccCCeeEEEecC
Q 003526 529 EYAFSPPAQAIELGS 543 (813)
Q Consensus 529 ey~f~P~s~~V~V~~ 543 (813)
+ .+.|++..+.|..
T Consensus 114 g-~~R~~HiH~~V~a 127 (193)
T TIGR02423 114 G-VLQAPHINVSVFA 127 (193)
T ss_pred C-CCcCCeEEEEEEC
Confidence 1 2356666666653
No 83
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=92.77 E-value=0.22 Score=43.85 Aligned_cols=45 Identities=27% Similarity=0.537 Sum_probs=36.6
Q ss_pred EEEEEcCCCCccCccEEEEEeCC----CceeeeeEecCceeEEEcCCCCC
Q 003526 561 TGTITLLSGQPKDGVSVEARSES----KGYYEETVTDTSGSYRLRGLHPD 606 (813)
Q Consensus 561 ~G~V~~~~G~p~~gv~V~a~~~~----~~~~~~a~TD~~G~fr~~gL~PG 606 (813)
.|++.| +|.|.+++.|++.... .....++.||++|+|.|.|=...
T Consensus 1 ~G~L~C-~~~P~~~~~V~L~e~d~~~~Ddll~~~~Td~~G~F~l~G~~~e 49 (80)
T PF01060_consen 1 KGQLMC-GGKPAKNVKVKLWEDDYFDPDDLLDETKTDSDGNFELSGSTNE 49 (80)
T ss_pred CeEEEe-CCccCCCCEEEEEECCCCCCCceeEEEEECCCceEEEEEEccC
Confidence 378888 5999999999998653 34778899999999999986433
No 84
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=92.06 E-value=0.52 Score=44.32 Aligned_cols=58 Identities=21% Similarity=0.242 Sum_probs=43.8
Q ss_pred EEEEEcC-CCCccCccEEEEEeCCC---ceeeeeEecCceeEEE-----cCCCCCCeEEEEEEeecCC
Q 003526 561 TGTITLL-SGQPKDGVSVEARSESK---GYYEETVTDTSGSYRL-----RGLHPDTTYVIKVVKKDGF 619 (813)
Q Consensus 561 ~G~V~~~-~G~p~~gv~V~a~~~~~---~~~~~a~TD~~G~fr~-----~gL~PG~~Y~V~v~~~~~~ 619 (813)
+=.|.|. .|.|-+|+.|.+....+ ....++.||+||+..- ..+.+| .|+|.....+.|
T Consensus 4 stHVLDt~~G~PAagv~V~L~~~~~~~~~~i~~~~Td~DGR~~~~~~~~~~~~~G-~Y~l~F~~~~Yf 70 (112)
T cd05822 4 STHVLDTATGKPAAGVAVTLYRLDGNGWTLLATGVTNADGRCDDLLPPGAQLAAG-TYKLTFDTGAYF 70 (112)
T ss_pred eeEEEeCCCCcccCCCEEEEEEecCCCeEEEEEEEECCCCCccCcccccccCCCe-eEEEEEEhhhhh
Confidence 3345564 59999999999987543 3677899999999863 457889 699999875444
No 85
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=92.05 E-value=0.49 Score=40.20 Aligned_cols=59 Identities=17% Similarity=0.304 Sum_probs=44.9
Q ss_pred cceEEEEEcCccceeeeEecCCceEEeCccCCeeEEEEEeeccccccCCeeEEEecCCceEEEEEEEEE
Q 003526 487 PSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQATR 555 (813)
Q Consensus 487 ~Gv~vsLsg~~~~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~ey~f~P~s~~V~V~~G~~~~v~~~~~r 555 (813)
+||.|.+.|. +.. ..-..+..|++|.|.|+..+.+|. +..+.|+|.+|+...+.+.+.+
T Consensus 11 ~gA~V~vdg~--~~G------~tp~~~~~l~~G~~~v~v~~~Gy~--~~~~~v~v~~~~~~~v~~~L~~ 69 (71)
T PF08308_consen 11 SGAEVYVDGK--YIG------TTPLTLKDLPPGEHTVTVEKPGYE--PYTKTVTVKPGETTTVNVTLEP 69 (71)
T ss_pred CCCEEEECCE--Eec------cCcceeeecCCccEEEEEEECCCe--eEEEEEEECCCCEEEEEEEEEE
Confidence 4688887653 122 223466679999999999999865 7889999999999988887765
No 86
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=91.31 E-value=0.63 Score=42.68 Aligned_cols=59 Identities=12% Similarity=0.311 Sum_probs=37.3
Q ss_pred eceEEEEEEccCCCCCCccceEEEE--EcCcc-cee---eeEecCCceEEe--CccCCeeEEEEEeecc
Q 003526 469 LSQISVRIYSKDDAGEPIPSVLLSL--SGDDG-YRN---NSVSWAGGSFHF--DNLFPGNFYLRPLLKE 529 (813)
Q Consensus 469 l~~I~g~V~d~~~~g~Pl~Gv~vsL--sg~~~-~r~---~~~Td~~G~f~f--~~L~PG~Y~v~~~~~e 529 (813)
...|...|+|.. |+||+|..|.+ ....+ +.. ...||++|.+.+ .+-.+|.|.|++...+
T Consensus 24 ~~tltatV~D~~--gnpv~g~~V~f~~~~~~~~l~~~~~~~~Td~~G~a~~tltst~aG~~~VtA~~~~ 90 (100)
T PF02369_consen 24 TNTLTATVTDAN--GNPVPGQPVTFSSSSSGGTLSPTNTSATTDSNGIATVTLTSTKAGTYTVTATVDG 90 (100)
T ss_dssp -EEEEEEEEETT--SEB-TS-EEEE--EESSSEES-CEE-EEE-TTSEEEEEEE-SS-EEEEEEEEETT
T ss_pred cEEEEEEEEcCC--CCCCCCCEEEEEEcCCCcEEecCccccEECCCEEEEEEEEecCceEEEEEEEECC
Confidence 345678899875 99999999988 33322 212 368999997655 4567999999987654
No 87
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=91.11 E-value=0.72 Score=42.27 Aligned_cols=57 Identities=23% Similarity=0.300 Sum_probs=38.0
Q ss_pred EEEEEEEcCCCCccCccEEEE--EeCCCceee---eeEecCceeEEE--cCCCCCCeEEEEEEee
Q 003526 559 SATGTITLLSGQPKDGVSVEA--RSESKGYYE---ETVTDTSGSYRL--RGLHPDTTYVIKVVKK 616 (813)
Q Consensus 559 sv~G~V~~~~G~p~~gv~V~a--~~~~~~~~~---~a~TD~~G~fr~--~gL~PG~~Y~V~v~~~ 616 (813)
.+.-+|+|.+|+|++|+.|.. ....+.... .++||++|.+.+ .+-.+| .|+|++.-.
T Consensus 26 tltatV~D~~gnpv~g~~V~f~~~~~~~~l~~~~~~~~Td~~G~a~~tltst~aG-~~~VtA~~~ 89 (100)
T PF02369_consen 26 TLTATVTDANGNPVPGQPVTFSSSSSGGTLSPTNTSATTDSNGIATVTLTSTKAG-TYTVTATVD 89 (100)
T ss_dssp EEEEEEEETTSEB-TS-EEEE--EESSSEES-CEE-EEE-TTSEEEEEEE-SS-E-EEEEEEEET
T ss_pred EEEEEEEcCCCCCCCCCEEEEEEcCCCcEEecCccccEECCCEEEEEEEEecCce-EEEEEEEEC
Confidence 366788999999999999998 333332222 478999998765 677899 699999864
No 88
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=90.81 E-value=0.55 Score=44.07 Aligned_cols=60 Identities=20% Similarity=0.331 Sum_probs=46.7
Q ss_pred ceEEEEEEccCCCCCCccceEEEEEcCcc----ceeeeEecCCceEEe-----CccCCeeEEEEEeeccc
Q 003526 470 SQISVRIYSKDDAGEPIPSVLLSLSGDDG----YRNNSVSWAGGSFHF-----DNLFPGNFYLRPLLKEY 530 (813)
Q Consensus 470 ~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~~----~r~~~~Td~~G~f~f-----~~L~PG~Y~v~~~~~ey 530 (813)
+.++..|.|.. .|.|.+|+.|.|..-++ ...++.||+||+..- .++.+|.|.++....+|
T Consensus 9 G~LTTHVLDta-~GkPAagv~V~L~rl~~~~~~~l~t~~Tn~DGR~d~pll~g~~~~~G~Y~l~F~~gdY 77 (124)
T COG2351 9 GRLTTHVLDTA-SGKPAAGVKVELYRLEGNQWELLKTVVTNADGRIDAPLLAGETLATGIYELVFHTGDY 77 (124)
T ss_pred ceeeeeeeecc-cCCcCCCCEEEEEEecCCcceeeeEEEecCCCcccccccCccccccceEEEEEEcchh
Confidence 45777899984 69999999999974322 345688999999873 35679999999887775
No 89
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=90.75 E-value=0.84 Score=41.74 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=38.6
Q ss_pred eEEEEEEccCCCCCCccceEEEEEc-Ccc-ceeeeEecCCceEEeCccCCeeEEEEEe
Q 003526 471 QISVRIYSKDDAGEPIPSVLLSLSG-DDG-YRNNSVSWAGGSFHFDNLFPGNFYLRPL 526 (813)
Q Consensus 471 ~I~g~V~d~~~~g~Pl~Gv~vsLsg-~~~-~r~~~~Td~~G~f~f~~L~PG~Y~v~~~ 526 (813)
.+.+.|.+-. +|+|++||.|+|.+ ..+ .....+||++|.+.|... -..+.+.+.
T Consensus 14 ~~~v~v~~L~-tg~Pv~ga~V~l~~~~~~~~l~~g~TD~~G~a~~~~~-~~~~~viA~ 69 (97)
T PF11974_consen 14 GLLVWVTSLS-TGKPVAGAEVELYDSRNGQVLASGKTDADGFASFDST-KKPFLVIAR 69 (97)
T ss_pred CEEEEEeeCC-CCCccCCCEEEEEECCCCcEeeeeeeCCCceEEecCC-CCCEEEEEE
Confidence 3456777764 59999999999986 433 456788999999999665 333444444
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=90.38 E-value=98 Score=43.51 Aligned_cols=40 Identities=15% Similarity=0.040 Sum_probs=25.0
Q ss_pred ceEEEEEcCccceeeeEecCCceEEeCccCCeeEEEEEeecc
Q 003526 488 SVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKE 529 (813)
Q Consensus 488 Gv~vsLsg~~~~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~e 529 (813)
+|.+.+.=+|+... ..+..-.|+=.-..||.|-|.....-
T Consensus 1896 ~Vtf~w~fGdgs~~--~~t~~~t~~HsY~~~G~Y~VtV~A~N 1935 (2740)
T TIGR00864 1896 AVNFRLQIGGAAPE--VLQPGPRFSHSFPRVDDHMVNLRAKN 1935 (2740)
T ss_pred ceEEEEEeCCCCce--eecCCCeEEeecCCCCcEEEEEEEEe
Confidence 46666653434322 23345677777789999998876543
No 91
>cd05469 Transthyretin_like Transthyretin_like. This domain is present in the transthyretin-like protein (TLP) family which includes transthyretin (TTR) and a transthyretin-related protein called 5-hydroxyisourate hydrolase (HIUase). TTR and HIUase are homotetrameric proteins with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits. TTR transports thyroid hormones and retinol in the blood serum of vertebrates while HIUase catalyzes the second step in a three-step ureide pathway. TTRs are highly conserved and found only in vertebrates while the HIUases are found in a wide range of bacterial, plant, fungal, slime mold and vertebrate organisms.
Probab=90.02 E-value=1.2 Score=41.99 Aligned_cols=57 Identities=12% Similarity=0.183 Sum_probs=41.9
Q ss_pred EEEEEcC-CCCccCccEEEEEeCC--C--ceeeeeEecCceeEEE----cCCCCCCeEEEEEEeecC
Q 003526 561 TGTITLL-SGQPKDGVSVEARSES--K--GYYEETVTDTSGSYRL----RGLHPDTTYVIKVVKKDG 618 (813)
Q Consensus 561 ~G~V~~~-~G~p~~gv~V~a~~~~--~--~~~~~a~TD~~G~fr~----~gL~PG~~Y~V~v~~~~~ 618 (813)
+=.|.|. .|.|-+|+.|.+.... + ....++.||+||+..- ..+.|| .|++.....+.
T Consensus 4 StHVLDt~~G~PAagv~V~L~~~~~~~~w~~l~~~~Tn~DGR~~~~l~~~~~~~G-~Y~l~F~t~~Y 69 (113)
T cd05469 4 MVKVLDAVRGSPAANVAIKVFRKTADGSWEIFATGKTNEDGELHGLITEEEFXAG-VYRVEFDTKSY 69 (113)
T ss_pred eEEEEeCCCCccCCCCEEEEEEecCCCceEEEEEEEECCCCCccCccccccccce-EEEEEEehHHh
Confidence 3455555 5999999999998643 2 3567899999999852 356788 69999976443
No 92
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=89.69 E-value=0.55 Score=44.16 Aligned_cols=59 Identities=25% Similarity=0.340 Sum_probs=41.1
Q ss_pred EEEEEEcC-CCCccCccEEEEEeCC--C--ceeeeeEecCceeEE-----EcCCCCCCeEEEEEEeecCC
Q 003526 560 ATGTITLL-SGQPKDGVSVEARSES--K--GYYEETVTDTSGSYR-----LRGLHPDTTYVIKVVKKDGF 619 (813)
Q Consensus 560 v~G~V~~~-~G~p~~gv~V~a~~~~--~--~~~~~a~TD~~G~fr-----~~gL~PG~~Y~V~v~~~~~~ 619 (813)
|+=.|.|. .|.|.+||.|++...+ + ....+++||+||+.. -..+.+| .|+|.....+.|
T Consensus 3 iStHVLDt~~G~PA~gv~V~L~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G-~Y~l~F~~~~Yf 71 (112)
T PF00576_consen 3 ISTHVLDTTTGKPAAGVPVTLYRLDSDGSWTLLAEGVTDADGRIKQPLLEGESLEPG-IYKLVFDTGDYF 71 (112)
T ss_dssp EEEEEEETTTTEE-TT-EEEEEEEETTSCEEEEEEEEBETTSEESSTSSETTTS-SE-EEEEEEEHHHHH
T ss_pred cEEEEeeCCCCCCccCCEEEEEEecCCCCcEEEEEEEECCCCcccccccccccccce-EEEEEEEHHHhH
Confidence 34456665 5999999999987543 2 366789999999982 2577899 699999865444
No 93
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=89.14 E-value=15 Score=49.06 Aligned_cols=165 Identities=17% Similarity=0.223 Sum_probs=97.8
Q ss_pred EEEEEEccCCCCCCccceEEEEEcCcc-ceeeeEecCCceEEeCc-cCCeeEEEEEeecc-cccc--------CCeeEEE
Q 003526 472 ISVRIYSKDDAGEPIPSVLLSLSGDDG-YRNNSVSWAGGSFHFDN-LFPGNFYLRPLLKE-YAFS--------PPAQAIE 540 (813)
Q Consensus 472 I~g~V~d~~~~g~Pl~Gv~vsLsg~~~-~r~~~~Td~~G~f~f~~-L~PG~Y~v~~~~~e-y~f~--------P~s~~V~ 540 (813)
+.+.+... .+|+|++|+.+++....+ ...+.+||++|+..|.+ ..+..|.+..--.. +.+. -+..-|+
T Consensus 307 l~v~v~sl-~sg~P~~g~~v~~~~~ngevl~~~~tds~G~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~d~s~f~V~ 385 (1621)
T COG2373 307 LDVFVQSL-SSGKPVPGVEVSVLAGNGEVLVSGTTDSQGHAKFSNAKKPAALLLARKEDGDFLGLDLTGGVFDLSDFDVE 385 (1621)
T ss_pred EEEEEEec-cCCCCCCCcEEEEEecCCcEEeeeEEccccceecccccCCceEEEEecCCCceEEEEcCCCcccccccccc
Confidence 56677665 359999999999886655 67889999999999986 55666665532111 1111 1111111
Q ss_pred e--cCCceEEEEEEE----EEe--eEEEEEEEEcCCCC-ccCccEEEEE--eCCCc--eeeeeEecCceeEEEc-----C
Q 003526 541 L--GSGESREVIFQA----TRV--AYSATGTITLLSGQ-PKDGVSVEAR--SESKG--YYEETVTDTSGSYRLR-----G 602 (813)
Q Consensus 541 V--~~G~~~~v~~~~----~r~--~~sv~G~V~~~~G~-p~~gv~V~a~--~~~~~--~~~~a~TD~~G~fr~~-----g 602 (813)
= .+|....+-+.. +|. .+.+.+..++.++. ++.++-+++. ...|. .....+.|++|.++++ +
T Consensus 386 g~~~~~~~~k~y~ftDRglYRpGE~v~~~~~~R~~~~~~a~~~~p~~l~v~~PdG~~~~~~~~~~~~~G~~~~~~~l~~n 465 (1621)
T COG2373 386 GRAAPGYGLKVYLFTDRGLYRPGETVHVNALLRDFDGKTALDNQPLKLRVLDPDGSVLRTLTITLDEEGLYELSFPLPEN 465 (1621)
T ss_pred ceecCCCceEEEEecCcccCCCCceeeeeeeehhhcccccccCCCeEEEEECCCCcEEEEEEEeccccCceEEeeeCCCC
Confidence 0 122222222221 122 23466777788888 7888777765 33333 3345668899988883 5
Q ss_pred CCCCCeEEEEEEeecC--C--CCcceeccCCceEEEEecC
Q 003526 603 LHPDTTYVIKVVKKDG--F--GSTKIERASPESVTVKVGS 638 (813)
Q Consensus 603 L~PG~~Y~V~v~~~~~--~--~~~~~~~~~p~~~~V~V~~ 638 (813)
-.-| .|++++.-.+. . ..-+++-+.|..+.|++..
T Consensus 466 a~tG-~w~l~~~~~~~~~~~s~~f~V~df~p~r~~i~l~~ 504 (1621)
T COG2373 466 ALTG-GYTLELYTGGKSAVISMSFRVEDFIPDRFKINLTL 504 (1621)
T ss_pred CCcc-eEEEEEEeCCccceeeeeEEhhHhCCceEEEeccc
Confidence 4567 59999986431 1 1222345567777776643
No 94
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates. TTR distributes the two thyroid hormones T3 (3,5,3'-triiodo-L-thyronine) and T4 (Thyroxin, or 3,5,3',5'-tetraiodo-L-thyronine), as well as retinol (vitamin A) through the formation of a macromolecular complex that includes each of these as well as retinol-binding protein. Misfolded forms of TTR are implicated in the amyloid diseases familial amyloidotic polyneuropathy and senile systemic amyloidosis. TTR forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits, which differ in their ligand binding affinity. A negative cooperativity has been observed for the binding of T4 and other TTR ligands. A fraction of plasma TTR is carried in high density lipoproteins by bindi
Probab=89.09 E-value=1.6 Score=41.63 Aligned_cols=58 Identities=14% Similarity=0.174 Sum_probs=42.6
Q ss_pred EEEEEEcC-CCCccCccEEEEEeCC-C---ceeeeeEecCceeEE--E--cCCCCCCeEEEEEEeecC
Q 003526 560 ATGTITLL-SGQPKDGVSVEARSES-K---GYYEETVTDTSGSYR--L--RGLHPDTTYVIKVVKKDG 618 (813)
Q Consensus 560 v~G~V~~~-~G~p~~gv~V~a~~~~-~---~~~~~a~TD~~G~fr--~--~gL~PG~~Y~V~v~~~~~ 618 (813)
|+=.|.|. .|.|-+||.|++.... + ....++.||+||+.. + ..+.+| .|+|.....++
T Consensus 9 ittHVLDt~~G~PAaGV~V~L~~~~~~~~w~~l~~~~Tn~DGR~~~ll~~~~~~~G-~Y~l~F~tg~Y 75 (121)
T cd05821 9 LMVKVLDAVRGSPAANVAVKVFKKTADGSWEPFASGKTTETGEIHGLTTDEQFTEG-VYKVEFDTKAY 75 (121)
T ss_pred cEEEEEECCCCccCCCCEEEEEEecCCCceEEEEEEEECCCCCCCCccCccccCCe-eEEEEEehhHh
Confidence 44556665 5999999999997643 2 356789999999985 2 345688 69999976443
No 95
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=88.92 E-value=0.7 Score=47.45 Aligned_cols=51 Identities=18% Similarity=0.324 Sum_probs=40.3
Q ss_pred eEEEEEEccCCCCCCccceEEEEEcC---------------------cc-ceeeeEecCCceEEeCccCCeeEE
Q 003526 471 QISVRIYSKDDAGEPIPSVLLSLSGD---------------------DG-YRNNSVSWAGGSFHFDNLFPGNFY 522 (813)
Q Consensus 471 ~I~g~V~d~~~~g~Pl~Gv~vsLsg~---------------------~~-~r~~~~Td~~G~f~f~~L~PG~Y~ 522 (813)
.|.++|+|.+ +++||+++.|.+-.. +. .|....||++|+|.|..+.||-|.
T Consensus 28 ~l~g~V~D~~-~c~Pv~~a~VdiWh~da~G~Ys~~~~~~~~~~~~~~~~flRG~~~TD~~G~~~F~TI~PG~Y~ 100 (188)
T cd03457 28 TLDLQVVDVA-TCCPPPNAAVDIWHCDATGVYSGYSAGGGGGEDTDDETFLRGVQPTDADGVVTFTTIFPGWYP 100 (188)
T ss_pred EEEEEEEeCC-CCccCCCeEEEEecCCCCCCCCCccCCccccccccCCCcCEEEEEECCCccEEEEEECCCCCC
Confidence 4678999864 489999999988311 11 356678999999999999999984
No 96
>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.
Probab=87.81 E-value=0.93 Score=41.19 Aligned_cols=42 Identities=19% Similarity=0.354 Sum_probs=32.5
Q ss_pred EEEEEEcCC--------CCccCccEEEEEeCC--C--ceeeeeEecCceeEEEc
Q 003526 560 ATGTITLLS--------GQPKDGVSVEARSES--K--GYYEETVTDTSGSYRLR 601 (813)
Q Consensus 560 v~G~V~~~~--------G~p~~gv~V~a~~~~--~--~~~~~a~TD~~G~fr~~ 601 (813)
|.|.|.|.+ ..|++||.|.+.-.. + ....+++||++|.|++.
T Consensus 1 V~G~V~C~~C~~~~~~~~~~l~GA~V~v~C~~~~~~~~~~~~~~Td~~G~F~i~ 54 (97)
T PF01190_consen 1 VEGVVYCDDCSSGFSRAAKPLPGAKVSVECKDGNGGVVFSAEAKTDENGYFSIE 54 (97)
T ss_pred CEEEEEeCCCCCCccccCccCCCCEEEEECCCCCCCcEEEEEEEeCCCCEEEEE
Confidence 467887543 568999999998443 2 25778999999999997
No 97
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=87.45 E-value=2.4 Score=38.03 Aligned_cols=62 Identities=10% Similarity=0.223 Sum_probs=43.5
Q ss_pred eeeceEEEEEEccCCCCCCccceEEEEE--cCccc---eeeeEecCCceEEeC--ccCCeeEEEEEeeccc
Q 003526 467 QKLSQISVRIYSKDDAGEPIPSVLLSLS--GDDGY---RNNSVSWAGGSFHFD--NLFPGNFYLRPLLKEY 530 (813)
Q Consensus 467 ~~l~~I~g~V~d~~~~g~Pl~Gv~vsLs--g~~~~---r~~~~Td~~G~f~f~--~L~PG~Y~v~~~~~ey 530 (813)
..++.|.++|+|.. |+|+++..|+++ ++... .....||++|+..+. +-.+|.|.|++...++
T Consensus 17 ~d~~~i~v~v~D~~--Gnpv~~~~V~f~~~~~~~~~~~~~~~~Td~~G~a~~~l~~~~~G~~~vta~~~~~ 85 (92)
T smart00634 17 SDAITLTATVTDAN--GNPVAGQEVTFTTPSGGALTLSKGTATTDANGIATVTLTSTTAGVYTVTASLENG 85 (92)
T ss_pred cccEEEEEEEECCC--CCCcCCCEEEEEECCCceeeccCCeeeeCCCCEEEEEEECCCCcEEEEEEEECCC
Confidence 46788999999986 999999776654 33101 133578999976653 3468889998876654
No 98
>KOG3006 consensus Transthyretin and related proteins [Lipid transport and metabolism]
Probab=87.19 E-value=5.1 Score=37.82 Aligned_cols=89 Identities=20% Similarity=0.327 Sum_probs=59.9
Q ss_pred ceEEEEEEccCCCCCCccceEEEEE---cCcc--ceeeeEecCCceEEe----CccCCeeEEEEEeeccc-------ccc
Q 003526 470 SQISVRIYSKDDAGEPIPSVLLSLS---GDDG--YRNNSVSWAGGSFHF----DNLFPGNFYLRPLLKEY-------AFS 533 (813)
Q Consensus 470 ~~I~g~V~d~~~~g~Pl~Gv~vsLs---g~~~--~r~~~~Td~~G~f~f----~~L~PG~Y~v~~~~~ey-------~f~ 533 (813)
|.|...|.|.. .|.|..||.|.+. +++. ...+..|+++|+... ..|.||.|.++...+.| .|.
T Consensus 21 ~~itahVLd~s-~GsPA~gVqV~~f~~~~~~~w~~igs~~T~~nGrv~~~~~~~tl~~GtYr~~~dT~~Y~~a~gv~sFy 99 (132)
T KOG3006|consen 21 PPITAHVLDIS-RGSPAAGVQVHLFILANDDTWTPIGSGFTQDNGRVDWVSPDFTLIPGTYRLVFDTEPYYKALGVESFY 99 (132)
T ss_pred CCcEeEEeecc-cCCcccceEEEEEEecCCCcccCccccccccCceeecccchhhhccceEEEEEecccccccCCccccc
Confidence 77889999884 5999999999875 2222 234567899998753 25679999999765555 344
Q ss_pred CC-eeEEEecCC-ceEEEEEEEEEeeEE
Q 003526 534 PP-AQAIELGSG-ESREVIFQATRVAYS 559 (813)
Q Consensus 534 P~-s~~V~V~~G-~~~~v~~~~~r~~~s 559 (813)
|- ...+.+.++ ++-.|.+.+-+-+||
T Consensus 100 pyvevvf~in~s~qhyhvpllLsPygyS 127 (132)
T KOG3006|consen 100 PYVEVVFNINDSTQHYHVPLLLSPYGYS 127 (132)
T ss_pred ccEEEEEEeccCcceEEEeEEeccccee
Confidence 42 334566665 666676666554554
No 99
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=86.30 E-value=1.5 Score=45.09 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=38.2
Q ss_pred EEEEEEEcCC-CCccCccEEEEEeCC--C-------c------------eeeeeEecCceeEEEcCCCCCCeEE
Q 003526 559 SATGTITLLS-GQPKDGVSVEARSES--K-------G------------YYEETVTDTSGSYRLRGLHPDTTYV 610 (813)
Q Consensus 559 sv~G~V~~~~-G~p~~gv~V~a~~~~--~-------~------------~~~~a~TD~~G~fr~~gL~PG~~Y~ 610 (813)
.+.|+|.|.+ ++|+++|.|++=-.+ + . ......||++|.|+|+-+.||+ |.
T Consensus 28 ~l~g~V~D~~~c~Pv~~a~VdiWh~da~G~Ys~~~~~~~~~~~~~~~~flRG~~~TD~~G~~~F~TI~PG~-Y~ 100 (188)
T cd03457 28 TLDLQVVDVATCCPPPNAAVDIWHCDATGVYSGYSAGGGGGEDTDDETFLRGVQPTDADGVVTFTTIFPGW-YP 100 (188)
T ss_pred EEEEEEEeCCCCccCCCeEEEEecCCCCCCCCCccCCccccccccCCCcCEEEEEECCCccEEEEEECCCC-CC
Confidence 4789999975 779999999962110 1 0 1224679999999999999996 74
No 100
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=86.08 E-value=18 Score=48.44 Aligned_cols=202 Identities=18% Similarity=0.274 Sum_probs=112.5
Q ss_pred CCCCCeEEEEEecCcchhhhcccCceeeeeEeCCCccEEecc-CCCCceEEEEEe-CCCeeeeec-C-------------
Q 003526 397 PPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGP-LYDDITYNVEAS-KPGYYLRQV-G------------- 460 (813)
Q Consensus 397 ~pl~ga~V~l~~~~~~~~~~~~~~~~~~~t~Td~~G~f~~~~-L~~~g~Y~i~A~-k~gy~~~~~-~------------- 460 (813)
.|++|+++.+...+ |+...+.+||++|+..|.+ ..+ ..|.+... ..+|.+... +
T Consensus 318 ~P~~g~~v~~~~~n---------gevl~~~~tds~G~~~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~~d~s~f~V~g~ 387 (1621)
T COG2373 318 KPVPGVEVSVLAGN---------GEVLVSGTTDSQGHAKFSNAKKP-AALLLARKEDGDFLGLDLTGGVFDLSDFDVEGR 387 (1621)
T ss_pred CCCCCcEEEEEecC---------CcEEeeeEEccccceecccccCC-ceEEEEecCCCceEEEEcCCCccccccccccce
Confidence 38999999998765 3678899999999999986 333 35655554 333333321 1
Q ss_pred --Cc-c-----ee---eeeece---EEEEEEccCCCCC-Cccc--eEEEEEcCccc---eeeeEecCCceEEeC-----c
Q 003526 461 --PN-S-----FS---CQKLSQ---ISVRIYSKDDAGE-PIPS--VLLSLSGDDGY---RNNSVSWAGGSFHFD-----N 515 (813)
Q Consensus 461 --~~-~-----f~---~~~l~~---I~g~V~d~~~~g~-Pl~G--v~vsLsg~~~~---r~~~~Td~~G~f~f~-----~ 515 (813)
++ . |+ .++.|. +.+..++.+ +. ++.+ +.+++...+|. +.....|++|-+.|. +
T Consensus 388 ~~~~~~~k~y~ftDRglYRpGE~v~~~~~~R~~~--~~~a~~~~p~~l~v~~PdG~~~~~~~~~~~~~G~~~~~~~l~~n 465 (1621)
T COG2373 388 AAPGYGLKVYLFTDRGLYRPGETVHVNALLRDFD--GKTALDNQPLKLRVLDPDGSVLRTLTITLDEEGLYELSFPLPEN 465 (1621)
T ss_pred ecCCCceEEEEecCcccCCCCceeeeeeeehhhc--ccccccCCCeEEEEECCCCcEEEEEEEeccccCceEEeeeCCCC
Confidence 11 1 11 111221 233444443 44 5554 45555666652 334556788866663 3
Q ss_pred cCCeeEEEEEeeccc-----------cccCCeeEEEecCCceEEEEEEEEEeeEEEEEEEEcCCCCccCccEEEE--EeC
Q 003526 516 LFPGNFYLRPLLKEY-----------AFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEA--RSE 582 (813)
Q Consensus 516 L~PG~Y~v~~~~~ey-----------~f~P~s~~V~V~~G~~~~v~~~~~r~~~sv~G~V~~~~G~p~~gv~V~a--~~~ 582 (813)
-.-|.|.++....+- .|.|....|.+..-+.. + .......+.=.+..+.|.|.+|-+++. ...
T Consensus 466 a~tG~w~l~~~~~~~~~~~s~~f~V~df~p~r~~i~l~~~k~~---~-~~g~~v~~~v~~~yL~GaPa~g~~~~~~l~lr 541 (1621)
T COG2373 466 ALTGGYTLELYTGGKSAVISMSFRVEDFIPDRFKINLTLDKTE---W-VPGKDVKIKVDLRYLYGAPAAGLTVQGELDLR 541 (1621)
T ss_pred CCcceEEEEEEeCCccceeeeeEEhhHhCCceEEEeccccccc---c-cCCCcEEEEEEEEecCCCcccCceeeeEEEee
Confidence 457899998776441 35566666555532221 0 000112233334578899999999983 211
Q ss_pred C------C-------------------ceeeeeEecCceeEEEcCCCCC--CeEEEEEE
Q 003526 583 S------K-------------------GYYEETVTDTSGSYRLRGLHPD--TTYVIKVV 614 (813)
Q Consensus 583 ~------~-------------------~~~~~a~TD~~G~fr~~gL~PG--~~Y~V~v~ 614 (813)
. + ......+||.+|+..+.=-.++ ..|.+.+.
T Consensus 542 ~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~~~D~~G~a~~~l~~~~~~s~~~~~~~ 600 (1621)
T COG2373 542 PTRFSVPGFPGFTFGLADEEPNSLTFEEELELTVTDGKGKASLDLDLAETPSPYQLLVA 600 (1621)
T ss_pred cccccccCCcceeeeccccccccccccccccccccCCCCcEeEecccccCCCceEEEee
Confidence 0 0 0112378999999988644333 23555444
No 101
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=86.04 E-value=1.3 Score=38.88 Aligned_cols=39 Identities=23% Similarity=0.300 Sum_probs=31.7
Q ss_pred CCCCCeEEEEEecCcchhhhcccCceeeeeEeCCCccEEeccCC
Q 003526 397 PPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLY 440 (813)
Q Consensus 397 ~pl~ga~V~l~~~~~~~~~~~~~~~~~~~t~Td~~G~f~~~~L~ 440 (813)
.|.++|.|+|...+. +.+++...++.||++|+|.+.+-.
T Consensus 9 ~P~~~~~V~L~e~d~-----~~~Ddll~~~~Td~~G~F~l~G~~ 47 (80)
T PF01060_consen 9 KPAKNVKVKLWEDDY-----FDPDDLLDETKTDSDGNFELSGST 47 (80)
T ss_pred ccCCCCEEEEEECCC-----CCCCceeEEEEECCCceEEEEEEc
Confidence 579999999998763 235678899999999999997644
No 102
>smart00095 TR_THY Transthyretin.
Probab=86.02 E-value=1.9 Score=41.17 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=41.9
Q ss_pred EEEEEEcC-CCCccCccEEEEEeCC-C---ceeeeeEecCceeEE--E--cCCCCCCeEEEEEEeec
Q 003526 560 ATGTITLL-SGQPKDGVSVEARSES-K---GYYEETVTDTSGSYR--L--RGLHPDTTYVIKVVKKD 617 (813)
Q Consensus 560 v~G~V~~~-~G~p~~gv~V~a~~~~-~---~~~~~a~TD~~G~fr--~--~gL~PG~~Y~V~v~~~~ 617 (813)
++=.|.|. .|+|-+|+.|.+.... + ....+..||+||+.. + ..+.|| .|+|.....+
T Consensus 6 lTtHVLDt~~G~PAagv~V~L~~~~~~~~w~~la~~~Tn~DGR~~~ll~~~~~~~G-~Y~l~F~tg~ 71 (121)
T smart00095 6 LMVKVLDAVRGSPAVNVAVKVFKKTEEGTWEPFASGKTNESGEIHELTTDEKFVEG-LYKVEFDTKS 71 (121)
T ss_pred eEEEEEECCCCccCCCCEEEEEEeCCCCceEEEEEEecCCCccccCccCcccccce-EEEEEEehhH
Confidence 34456665 5999999999997643 2 356789999999985 2 356689 6999987633
No 103
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=85.09 E-value=1.4 Score=36.54 Aligned_cols=36 Identities=22% Similarity=0.599 Sum_probs=21.3
Q ss_pred eEEEeecCCccEEEEEEeeccccccCCCCeEEEeeEEEEEe
Q 003526 149 QFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDV 189 (813)
Q Consensus 149 ~f~F~~VlPG~Y~v~v~~~~~~~~~~~~~wcw~~~~~~V~V 189 (813)
.+.|.++.||+|++.|... .....|-....++.+.|
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~-----~~~~~~~~~~~~l~i~I 65 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAK-----DNNGKWSSDEKSLTITI 65 (66)
T ss_dssp EEEEES--SEEEEEEEEEE-----ETTS-B-SS-EEEEEEE
T ss_pred EEEEEeCCCEEEEEEEEEE-----CCCCCcCcccEEEEEEE
Confidence 9999999999999999743 22333444334555554
No 104
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=83.76 E-value=3.9 Score=38.55 Aligned_cols=56 Identities=23% Similarity=0.239 Sum_probs=41.9
Q ss_pred EEEEcC-CCCccCccEEEEEeCCC---ceeeeeEecCceeEE-----EcCCCCCCeEEEEEEeecC
Q 003526 562 GTITLL-SGQPKDGVSVEARSESK---GYYEETVTDTSGSYR-----LRGLHPDTTYVIKVVKKDG 618 (813)
Q Consensus 562 G~V~~~-~G~p~~gv~V~a~~~~~---~~~~~a~TD~~G~fr-----~~gL~PG~~Y~V~v~~~~~ 618 (813)
=.|.|. .|+|-+||.|++....+ ....++.||+||+-. -+.+.+| .|++.....+.
T Consensus 13 THVLDta~GkPAagv~V~L~rl~~~~~~~l~t~~Tn~DGR~d~pll~g~~~~~G-~Y~l~F~~gdY 77 (124)
T COG2351 13 THVLDTASGKPAAGVKVELYRLEGNQWELLKTVVTNADGRIDAPLLAGETLATG-IYELVFHTGDY 77 (124)
T ss_pred eeeeecccCCcCCCCEEEEEEecCCcceeeeEEEecCCCcccccccCccccccc-eEEEEEEcchh
Confidence 344443 59999999999986543 367789999999877 2567788 59988887443
No 105
>PRK15310 fimbrial outer membrane usher protein TcfC; Provisional
Probab=81.37 E-value=19 Score=44.77 Aligned_cols=66 Identities=15% Similarity=0.090 Sum_probs=44.6
Q ss_pred EecCCceEEEEEEEEEeeEEEEEEEEcCCCCccCccEEEEEeCCCceeeeeEecCceeEEEcCCCCCCeEEEEEEe
Q 003526 540 ELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVK 615 (813)
Q Consensus 540 ~V~~G~~~~v~~~~~r~~~sv~G~V~~~~G~p~~gv~V~a~~~~~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~ 615 (813)
.+-+|...-++... ...+.+.|++.+.+|.|+.++.+.= +.. +.||++|.|.++ + +..+=+|.+..
T Consensus 769 fL~PGnl~~~~v~~-~~~~~yiGr~~~~~G~~l~~a~IlN------~~~-~~td~~GgF~~d-~-d~~~~~L~ll~ 834 (895)
T PRK15310 769 FLTPGHLLVHNISA-SMSRLYVGRVLDKDGRPLLDAQPLN------YPF-LSLGPSGRFSLQ-S-EHKESSLWLLS 834 (895)
T ss_pred EecCCceEEecccE-EEEEEEEEEEECCCCCCcccceeec------Ccc-ceecCCCCEEEE-c-ccCCceEEEEe
Confidence 45566555444444 3456789999999999999998841 122 899999999997 3 34223444444
No 106
>COG5266 CbiK ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=78.94 E-value=6.2 Score=42.12 Aligned_cols=65 Identities=17% Similarity=0.183 Sum_probs=42.8
Q ss_pred eccEEEeeee---CCCCCeEEEEEecC----cchhhhcccCceeeeeEeCCCccEEeccCCCCceEEEEEeCC
Q 003526 387 LGLYTEGSVS---PPLSGVNIRIIAAE----DSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKP 452 (813)
Q Consensus 387 ~G~~i~G~V~---~pl~ga~V~l~~~~----~~~~~~~~~~~~~~~t~Td~~G~f~~~~L~~~g~Y~i~A~k~ 452 (813)
.|-.+.|+|+ .||+||+|.+.-.+ +......+.........||++|.|.|-|+. +|.+-+.|.+.
T Consensus 170 ~ge~f~~~vl~~GkPv~nA~V~v~~~n~~~~d~~a~~~~~ek~~~~~~TD~kG~~~fip~r-~G~W~~~~~~~ 241 (264)
T COG5266 170 VGEVFRGKVLDNGKPVPNATVEVEFDNIDTKDNRAKTGNTEKTALVQFTDDKGEVSFIPLR-AGVWGFAVEHK 241 (264)
T ss_pred cCCeEEEEEEECCccCCCcEEEEEEecccccccccccCCCCCcceEEEcCCCceEEEEEcc-CceEEEEeecc
Confidence 4666677777 48999999987221 100000111123467899999999999999 47777777644
No 107
>KOG3006 consensus Transthyretin and related proteins [Lipid transport and metabolism]
Probab=77.36 E-value=11 Score=35.71 Aligned_cols=70 Identities=20% Similarity=0.221 Sum_probs=49.9
Q ss_pred EEEEEEEcC-CCCccCccEEEEEeCC-C---ceeeeeEecCceeEEE----cCCCCCCeEEEEEEeecCCCCcceeccCC
Q 003526 559 SATGTITLL-SGQPKDGVSVEARSES-K---GYYEETVTDTSGSYRL----RGLHPDTTYVIKVVKKDGFGSTKIERASP 629 (813)
Q Consensus 559 sv~G~V~~~-~G~p~~gv~V~a~~~~-~---~~~~~a~TD~~G~fr~----~gL~PG~~Y~V~v~~~~~~~~~~~~~~~p 629 (813)
++.-.|.|. .|.|-+||.|-+.-.. + ..+....|++||+-.. .-|.|| .|++.......|...+++.+.|
T Consensus 22 ~itahVLd~s~GsPA~gVqV~~f~~~~~~~w~~igs~~T~~nGrv~~~~~~~tl~~G-tYr~~~dT~~Y~~a~gv~sFyp 100 (132)
T KOG3006|consen 22 PITAHVLDISRGSPAAGVQVHLFILANDDTWTPIGSGFTQDNGRVDWVSPDFTLIPG-TYRLVFDTEPYYKALGVESFYP 100 (132)
T ss_pred CcEeEEeecccCCcccceEEEEEEecCCCcccCccccccccCceeecccchhhhccc-eEEEEEecccccccCCcccccc
Confidence 366777776 4899999999876432 1 2566788999998763 446799 5999998766665555655444
No 108
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=76.90 E-value=13 Score=33.28 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=41.7
Q ss_pred EEEEEEEcCCCCccCccEEEEEeCCCc----eeeeeEecCceeEEE--cCCCCCCeEEEEEEee
Q 003526 559 SATGTITLLSGQPKDGVSVEARSESKG----YYEETVTDTSGSYRL--RGLHPDTTYVIKVVKK 616 (813)
Q Consensus 559 sv~G~V~~~~G~p~~gv~V~a~~~~~~----~~~~a~TD~~G~fr~--~gL~PG~~Y~V~v~~~ 616 (813)
.+.=+|+|.+|+|+++..|...-.++. ......||++|+..+ ++-.+| .|+|++..+
T Consensus 21 ~i~v~v~D~~Gnpv~~~~V~f~~~~~~~~~~~~~~~~Td~~G~a~~~l~~~~~G-~~~vta~~~ 83 (92)
T smart00634 21 TLTATVTDANGNPVAGQEVTFTTPSGGALTLSKGTATTDANGIATVTLTSTTAG-VYTVTASLE 83 (92)
T ss_pred EEEEEEECCCCCCcCCCEEEEEECCCceeeccCCeeeeCCCCEEEEEEECCCCc-EEEEEEEEC
Confidence 366788999999999988876643321 124568999998765 566788 589988864
No 109
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=74.91 E-value=6.1 Score=37.15 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=30.9
Q ss_pred CCceEEEeecCCccEEEEEEeeccccccCCCCeEEEeeEEEEEeecCc
Q 003526 146 DSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVGTND 193 (813)
Q Consensus 146 ~~g~f~F~~VlPG~Y~v~v~~~~~~~~~~~~~wcw~~~~~~V~V~~~~ 193 (813)
.+|.|.+.+|.||+|+|.+.. .-.|-|....++|+|..++
T Consensus 56 ~~g~y~~~~v~pG~h~i~~~~--------~~~~~~~~~~l~~~~~~G~ 95 (117)
T PF11008_consen 56 KNGGYFYVEVPPGKHTISAKS--------EFSSSPGANSLDVTVEAGK 95 (117)
T ss_pred CCCeEEEEEECCCcEEEEEec--------CccCCCCccEEEEEEcCCC
Confidence 679999999999999999972 2134446778888887665
No 110
>PRK15310 fimbrial outer membrane usher protein TcfC; Provisional
Probab=74.60 E-value=35 Score=42.61 Aligned_cols=109 Identities=20% Similarity=0.235 Sum_probs=64.4
Q ss_pred eccEEEeeee-CCCCCeEEEEEecCcchhhhcccCceeeeeEeCC--CccEE---------eccCCCCceEEEEEeC---
Q 003526 387 LGLYTEGSVS-PPLSGVNIRIIAAEDSQIASLKKGHLALETSTGA--DGSFI---------GGPLYDDITYNVEASK--- 451 (813)
Q Consensus 387 ~G~~i~G~V~-~pl~ga~V~l~~~~~~~~~~~~~~~~~~~t~Td~--~G~f~---------~~~L~~~g~Y~i~A~k--- 451 (813)
.|++..|.-. .|.+|+.|.+-..++. -..+.-+. ++.++ |=||++=..|.++..-
T Consensus 682 ~gv~wgg~g~~~~~AGviV~v~~~dd~----------~~~akv~g~~~~~~~~slg~G~~~llPl~~Y~~~~vev~da~~ 751 (895)
T PRK15310 682 NGLFWGGGQDGEPASGMAVNVESEGDE----------GSSGKVVSVRGSSQPFSLGFGQQSLLLMEGYNATEVTIEDAGV 751 (895)
T ss_pred cceEEcCCCCCCCcceEEEEeccCCCc----------cceEEEecccccceeeeccCCceeeEecCCccceeEEEecCCc
Confidence 4566666622 4677887777654332 22233333 33333 3477766778887763
Q ss_pred --CCeeeeec--C-------Cc-----ceeeeeece-EEEEEEccCCCCCCccceEEEEEcCccceeeeEecCCceEEeC
Q 003526 452 --PGYYLRQV--G-------PN-----SFSCQKLSQ-ISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFD 514 (813)
Q Consensus 452 --~gy~~~~~--~-------~~-----~f~~~~l~~-I~g~V~d~~~~g~Pl~Gv~vsLsg~~~~r~~~~Td~~G~f~f~ 514 (813)
++|..-.. + |+ +..+ +.-. +.|++++.+ |.||.++.+. +... +.||++|.|.++
T Consensus 752 s~~~~~~Vt~g~g~~~~fL~PGnl~~~~v~~-~~~~~yiGr~~~~~--G~~l~~a~Il-----N~~~-~~td~~GgF~~d 822 (895)
T PRK15310 752 SSQGMAGVKAGGGSRRYFLTPGHLLVHNISA-SMSRLYVGRVLDKD--GRPLLDAQPL-----NYPF-LSLGPSGRFSLQ 822 (895)
T ss_pred cccceeeecccCCccceEecCCceEEecccE-EEEEEEEEEEECCC--CCCcccceee-----cCcc-ceecCCCCEEEE
Confidence 44443321 1 22 2223 3333 678999886 9999998884 2223 689999999994
No 111
>COG1470 Predicted membrane protein [Function unknown]
Probab=72.53 E-value=2e+02 Score=33.68 Aligned_cols=79 Identities=14% Similarity=0.338 Sum_probs=50.1
Q ss_pred ecCCccEEEEEEeeccccccCCCCeEEEeeEEEEEeecCccc--ceeEEEeceEEEEEeccceeeeEeecCCCeeeeEe-
Q 003526 154 DVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVGTNDVK--GVEFVQKGYWLNVISTHDVDAYMTQQDGSHVPLKV- 230 (813)
Q Consensus 154 ~VlPG~Y~v~v~~~~~~~~~~~~~wcw~~~~~~V~V~~~~~~--~~~f~q~Gy~v~v~ssh~~~~~~~~~~~~~~~~~l- 230 (813)
++-||+|.+.+. +.--+++....|.+...... .+.+.+.+|....-....+-++++..+.-..+++|
T Consensus 224 e~t~g~y~~~i~----------~~g~ye~~~~av~l~d~~t~dLkls~~~k~~~ftEl~~s~~~~~i~~~~t~sf~V~Ie 293 (513)
T COG1470 224 EITPGKYVVLIA----------KKGIYEKKKRAVKLNDGETKDLKLSVTEKKSYFTELNSSDIYLEISPSTTASFTVSIE 293 (513)
T ss_pred EecCcceEEEec----------cccceecceEEEEcCCCcccceeEEEEeccceEEEeecccceeEEccCCceEEEEEEc
Confidence 688999999996 34457888888888766655 46777877777654444555555543333334555
Q ss_pred cccc--eeEeecCC
Q 003526 231 KKGS--QHICVESP 242 (813)
Q Consensus 231 ~kG~--~~~c~~~~ 242 (813)
++|. ...|++..
T Consensus 294 N~g~~~d~y~Le~~ 307 (513)
T COG1470 294 NRGKQDDEYALELS 307 (513)
T ss_pred cCCCCCceeEEEec
Confidence 3444 35666544
No 112
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=71.62 E-value=17 Score=30.61 Aligned_cols=49 Identities=37% Similarity=0.517 Sum_probs=35.0
Q ss_pred CCCccCccEEEEEeCCCc--eeeeeEecCceeEEEcCCCCCCeEEEEEEee
Q 003526 568 SGQPKDGVSVEARSESKG--YYEETVTDTSGSYRLRGLHPDTTYVIKVVKK 616 (813)
Q Consensus 568 ~G~p~~gv~V~a~~~~~~--~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~~ 616 (813)
.+.++.+-.|+.....+. ..........-.|.|.||.||+.|.+++.+-
T Consensus 26 ~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~ 76 (85)
T PF00041_consen 26 GNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAV 76 (85)
T ss_dssp TSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEE
T ss_pred CCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEE
Confidence 466677788877765432 3333444445599999999999999999874
No 113
>PRK15235 outer membrane fimbrial usher protein SefC; Provisional
Probab=71.27 E-value=87 Score=39.49 Aligned_cols=111 Identities=13% Similarity=0.081 Sum_probs=76.8
Q ss_pred eeEecCCceEEeCccCCeeE---EEEEe--eccccccCCeeEEEecCCceEEEEEEEEEeeEEEEEEEEcCCCCccC-cc
Q 003526 502 NSVSWAGGSFHFDNLFPGNF---YLRPL--LKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GV 575 (813)
Q Consensus 502 ~~~Td~~G~f~f~~L~PG~Y---~v~~~--~~ey~f~P~s~~V~V~~G~~~~v~~~~~r~~~sv~G~V~~~~G~p~~-gv 575 (813)
...||..|...+.+|.|=.. .|.+. ..+..+.-..+.|.-..|....+.|...+ ...+-=++++.+|+|+| |+
T Consensus 668 ~~~Td~~G~avvp~l~pY~~N~i~iD~~~LP~dvei~~t~~~vvPt~GAvv~~~F~~~~-g~~~ll~l~~~~G~~lPfGa 746 (814)
T PRK15235 668 GVRTDFRGYTISSYLTPYMNNFISIDPTTLPINTDIRQTDIQVVPTEGAIVKAVYKTSV-GTNALIRITRTNGKPLALGT 746 (814)
T ss_pred CCEECCCCeEEeCCCCCceeceEEecccCCCCCeEecccEEEEEecCCcEEEEEEEEee-eeEEEEEEECCCCCcCCCce
Confidence 35899999999999987553 23222 22344444566677778888888887654 34677788999999987 55
Q ss_pred EEEEEeCCCceeeeeEecCceeEEEcCCCCCCeEEEEEEe
Q 003526 576 SVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVK 615 (813)
Q Consensus 576 ~V~a~~~~~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~ 615 (813)
.|.+.+.++..........+|.--|+||.|.. ++.++.
T Consensus 747 ~V~~~~~~g~~~~~g~Vg~~G~vyl~gl~~~~--~L~v~w 784 (814)
T PRK15235 747 VLSLKNNDGVIQSTSIVGEDGQAYVSGLSGVQ--KLIASW 784 (814)
T ss_pred EEEecCCCCceeeeEEEcCCCEEEEEcCCCCc--eEEEEE
Confidence 55554433322345789999999999999875 444554
No 114
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=70.51 E-value=72 Score=31.85 Aligned_cols=31 Identities=29% Similarity=0.552 Sum_probs=23.3
Q ss_pred ecCceeEEEc------CCCCCCeEEEEEEeecCCCCc
Q 003526 592 TDTSGSYRLR------GLHPDTTYVIKVVKKDGFGST 622 (813)
Q Consensus 592 TD~~G~fr~~------gL~PG~~Y~V~v~~~~~~~~~ 622 (813)
...+|.|++. .|.+|..|+|++.+.|..||.
T Consensus 102 ~~~~~~~~~~yp~~fpsle~~~~YtLtV~a~D~aGN~ 138 (158)
T PF13750_consen 102 NKGNGVYTLEYPRIFPSLEADDSYTLTVSATDKAGNQ 138 (158)
T ss_pred eccCceEEeecccccCCcCCCCeEEEEEEEEecCCCE
Confidence 4467888884 677898999999987654544
No 115
>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes. These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.
Probab=70.03 E-value=39 Score=35.74 Aligned_cols=82 Identities=23% Similarity=0.388 Sum_probs=49.1
Q ss_pred eeceEEEEEEccCCCCCCcc----ceEEEEEcCccc----eeeeEecCCceEEeCccCCeeEEEEEeeccc--cccCCee
Q 003526 468 KLSQISVRIYSKDDAGEPIP----SVLLSLSGDDGY----RNNSVSWAGGSFHFDNLFPGNFYLRPLLKEY--AFSPPAQ 537 (813)
Q Consensus 468 ~l~~I~g~V~d~~~~g~Pl~----Gv~vsLsg~~~~----r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~ey--~f~P~s~ 537 (813)
+-+.++|+|.|.. +|+|++ |+.+.|... +| ........||.|.=..|..|+|.|.+...-+ .....+.
T Consensus 20 P~s~l~G~iiD~~-tgE~i~~~~~gv~i~l~e~-gy~~~~~~~~~v~qDGtf~n~~lF~G~Yki~~~~G~fp~~~~~dti 97 (222)
T PF12866_consen 20 PDSTLTGRIIDVY-TGEPIQTDIGGVRIQLYEL-GYGDNTPQDVYVKQDGTFRNTKLFDGDYKIVPKNGNFPWVVPVDTI 97 (222)
T ss_dssp --EEEEEEEEECC-TTEE----STSSEEEEECS--CCG--SEEEEB-TTSEEEEEEE-SEEEEEEE-CTSCSBSCCE--E
T ss_pred CCceEEEEEEEee-cCCeeeecCCceEEEEEec-ccccCCCcceEEccCCceeeeeEeccceEEEEcCCCCcccCCCccE
Confidence 3567899999864 588877 899999754 22 2345567899996568999999999843322 1223456
Q ss_pred EEEecCCceEEEEEEE
Q 003526 538 AIELGSGESREVIFQA 553 (813)
Q Consensus 538 ~V~V~~G~~~~v~~~~ 553 (813)
.|+|+ |. +.++|.-
T Consensus 98 ~v~i~-G~-t~~d~eV 111 (222)
T PF12866_consen 98 EVDIK-GN-TTQDFEV 111 (222)
T ss_dssp EEEES-SC-EEEEEEE
T ss_pred EEEec-Cc-eEEeEEe
Confidence 67777 43 3444443
No 116
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=69.39 E-value=1.6e+02 Score=32.65 Aligned_cols=106 Identities=19% Similarity=0.330 Sum_probs=59.7
Q ss_pred ceEEeCccCCee-EEEEEeecc--------c----c-c--cCCeeEEEecCCceEEEEEEEEEe--eEEEE--------E
Q 003526 509 GSFHFDNLFPGN-FYLRPLLKE--------Y----A-F--SPPAQAIELGSGESREVIFQATRV--AYSAT--------G 562 (813)
Q Consensus 509 G~f~f~~L~PG~-Y~v~~~~~e--------y----~-f--~P~s~~V~V~~G~~~~v~~~~~r~--~~sv~--------G 562 (813)
-.+.+.+|.|++ |++....-. | . . ...++...+++|+...+.+..... -|+.. .
T Consensus 15 t~~t~~~L~p~t~YyfdVF~vn~~~n~ssay~gt~~~t~~~~r~~~~~Lkdg~l~~~~l~~~~g~~~f~f~vP~~~~~~~ 94 (300)
T PF10179_consen 15 TNQTLSGLKPDTTYYFDVFVVNQLTNNSSAYLGTFARTREENRSKPTRLKDGKLTQVKLKGKGGFKFFSFKVPKRSSTHQ 94 (300)
T ss_pred ceEEeccCCCCCeEEEEEEEEECCCCceeeeeEEEEEEccccCCCcEEcccCcEEEEEECCcCceeEEEEcCCcCCCCCc
Confidence 456667788887 776643211 1 1 1 234556788888888777765431 12211 0
Q ss_pred EEEc-CCCCccCccEEEEEeCCCceeeeeEecCceeEEEcCCCCCCeEEEEEEe
Q 003526 563 TITL-LSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVK 615 (813)
Q Consensus 563 ~V~~-~~G~p~~gv~V~a~~~~~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~ 615 (813)
.+.- +--|.- .|.|++...+.....+...-.-.+|++.|+.||..|.|++..
T Consensus 95 ~~~l~v~~C~G-~V~v~i~r~gk~l~~~~~v~~~~~f~l~~~~~g~~Yliri~~ 147 (300)
T PF10179_consen 95 SLWLFVQSCSG-SVRVEISRNGKILLSQKNVEGLRHFRLSGVKPGERYLIRIQI 147 (300)
T ss_pred cEEEEEEeCCC-eEEEEEEECCeEEeeeecccceEEEEECCCCCCCeEEEEEEc
Confidence 0100 011211 166766655433333335556679999999999889999943
No 117
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.02 E-value=56 Score=36.73 Aligned_cols=136 Identities=21% Similarity=0.302 Sum_probs=70.3
Q ss_pred eCCCccEEeccCCCCceEEEEEeC----CCeeeeecCCcceeeeeeceEEEEEEccCCCCCCccceEEEEEcCccceeee
Q 003526 428 TGADGSFIGGPLYDDITYNVEASK----PGYYLRQVGPNSFSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNS 503 (813)
Q Consensus 428 Td~~G~f~~~~L~~~g~Y~i~A~k----~gy~~~~~~~~~f~~~~l~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~~~r~~~ 503 (813)
-=.||+||+ -+|.+.++. |+|.-.. +.+...-.+.|+.+|-.....|+-+.+.+|+...+.......
T Consensus 252 IPPDGkFrL------lsy~v~~~~~v~~pvyv~~~---i~l~~~~~~ri~~tvg~~~~~gK~ie~itVt~~~pn~i~~~~ 322 (418)
T KOG2740|consen 252 IPPDGKFRL------LSYRVDAQNQVAIPVYVKNS---ISLDSNHQGRISLTVGPKKKMGKTIELITVTVQDPNEIAYAS 322 (418)
T ss_pred cCCCCcEEE------EEEEEehhhccccceEEeee---eccCCCceEEEEEeccccccccceeEeEEEEecCccceeeee
Confidence 346777776 256666653 3333222 222222245666666444445777777777776553221112
Q ss_pred EecCCceEEeCc-cCCeeEEEEEeeccccccC-CeeEEEecCCceEEEEEEEEEeeEEEEEEEEcCCCCccCccEEEEEe
Q 003526 504 VSWAGGSFHFDN-LFPGNFYLRPLLKEYAFSP-PAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEARS 581 (813)
Q Consensus 504 ~Td~~G~f~f~~-L~PG~Y~v~~~~~ey~f~P-~s~~V~V~~G~~~~v~~~~~r~~~sv~G~V~~~~G~p~~gv~V~a~~ 581 (813)
.+-..|+|.++- ..-+++.+.-..++ +.| -...++..+|...-.++.-..-.|++. |..+.|..|+..+
T Consensus 323 k~~~~g~~~~~~~~k~l~W~~~~i~tg--~lp~Lkg~~~~e~~~sk~~~l~t~~Lqykiq-------g~alsglkVe~Ld 393 (418)
T KOG2740|consen 323 KILTHGTFTNSIIMKQLTWTFGSIATG--KLPVLKGTINLEPGFSKKVDLPTLSLQYKIQ-------GQALSGLKVERLD 393 (418)
T ss_pred cccccceeEeecccceeEEEeecccCC--cccccccccccCCCCCccccCcccceeeeee-------eeeccceEEEeee
Confidence 233567777653 34455555333332 223 244466666655544444333445444 5667788888765
No 118
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=66.89 E-value=3.7e+02 Score=34.54 Aligned_cols=185 Identities=14% Similarity=0.140 Sum_probs=102.2
Q ss_pred EeCCCcc--EEeccCCCCceEEEEEeCCCeeeeecC------CcceeeeeeceEEEE-------------EEccCCCCCC
Q 003526 427 STGADGS--FIGGPLYDDITYNVEASKPGYYLRQVG------PNSFSCQKLSQISVR-------------IYSKDDAGEP 485 (813)
Q Consensus 427 ~Td~~G~--f~~~~L~~~g~Y~i~A~k~gy~~~~~~------~~~f~~~~l~~I~g~-------------V~d~~~~g~P 485 (813)
.--.+|+ ++|-|=.. |...|...+.|.+..-.- .....+-++ .++|+ +.|.. ..+
T Consensus 712 r~l~~g~~~itF~P~e~-GeH~I~Vk~~G~hVpgsPf~i~V~~~e~dAsk~-~v~g~g~~~G~t~ep~~fivDtr--~ag 787 (1113)
T KOG0518|consen 712 RRLPNGHDGITFTPREV-GEHKINVKVAGKHVPGSPFSIKVSESEIDASKV-RVSGQGLKEGHTFEPAEFIVDTR--KAG 787 (1113)
T ss_pred EecCCCceeEEECCCcC-cceEEEEEEcceECCCCCeEEEeccccccceeE-EEecccccccccccchheEeccc--cCC
Confidence 3334453 44556553 788888888888755221 000111111 11222 33321 234
Q ss_pred ccceEEEEEcCccceeeeEecCCceEEeC--ccCCeeEEEEEeeccccccCCeeEEEecCCceEEEEEEEEEeeEEE--E
Q 003526 486 IPSVLLSLSGDDGYRNNSVSWAGGSFHFD--NLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQATRVAYSA--T 561 (813)
Q Consensus 486 l~Gv~vsLsg~~~~r~~~~Td~~G~f~f~--~L~PG~Y~v~~~~~ey~f~P~s~~V~V~~G~~~~v~~~~~r~~~sv--~ 561 (813)
-.|..|++.|.+..--|..-.+||.+... -=.||.|.|...-.+....++-.+|.+.....+--.+...|.+-++ -
T Consensus 788 yGgLsi~~~Gpskvd~~~~d~~dGt~kV~ytPtepG~Y~I~i~Fad~~I~gSPftVkv~~~~~vvesi~~~~~~~~va~~ 867 (1113)
T KOG0518|consen 788 YGGLSISVQGPSKVDLNVEDREDGTCKVSYTPTEPGTYIINIKFADEHIKGSPFTVKVTGESRVVESITRDREAPSVARV 867 (1113)
T ss_pred CCceEEEEeCCcccccceeecCCCeEEEEEeCCCCceEEEEEEEcCccCCCCceEEEecCCeeEeeeeeecccccceecc
Confidence 45788888888654445555588876653 3469999988765555555555666655322222223333333222 3
Q ss_pred EEEEcCCCCc----cCccEEEEEeCCC-ceeeeeEecCceeEEEcCC--CCCCeEEEEEEee
Q 003526 562 GTITLLSGQP----KDGVSVEARSESK-GYYEETVTDTSGSYRLRGL--HPDTTYVIKVVKK 616 (813)
Q Consensus 562 G~V~~~~G~p----~~gv~V~a~~~~~-~~~~~a~TD~~G~fr~~gL--~PG~~Y~V~v~~~ 616 (813)
|...+++... -..+++.+.+.++ ....+-.+-.+|.|++|=. .|| .|+|.+...
T Consensus 868 g~~~~l~lk~~~~~~~d~ta~vt~PSG~~~~aei~~~~~~~y~vrFtP~e~G-~~tl~V~y~ 928 (1113)
T KOG0518|consen 868 GHTCSLDLKATEASSQDITARVTDPSGRVFEAEIVDLGQGTYQVRFTPKEPG-NHTLSVKYK 928 (1113)
T ss_pred cceeeeeeecCCCCccceEEEeeCCCCCccccEEEECCCceEEEEecCCCCC-ceEEEEEec
Confidence 6666665433 3345555554443 2445667788998877644 489 699999864
No 119
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=65.93 E-value=16 Score=31.95 Aligned_cols=65 Identities=22% Similarity=0.267 Sum_probs=42.5
Q ss_pred CccEEEEEeCCCceeeeeEecCceeEEEcCCCCCCeEEEEEEeecCCCCcceeccCCceEEEEecCccccCceE
Q 003526 573 DGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGLDF 646 (813)
Q Consensus 573 ~gv~V~a~~~~~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~~~~~~~~~~~~~~p~~~~V~V~~~dv~gv~f 646 (813)
++++|.+.+. +.+.+...=+|+=++|.+|..|.-++.+.-. .+. +..+....|.+...|...++|
T Consensus 11 adAkl~v~G~-----~t~~~G~~R~F~T~~L~~G~~y~Y~v~a~~~-~dG---~~~t~~~~V~vrAGd~~~v~f 75 (75)
T TIGR03000 11 ADAKLKVDGK-----ETNGTGTVRTFTTPPLEAGKEYEYTVTAEYD-RDG---RILTRTRTVVVRAGDTVTVDF 75 (75)
T ss_pred CCCEEEECCe-----EcccCccEEEEECCCCCCCCEEEEEEEEEEe-cCC---cEEEEEEEEEEcCCceEEeeC
Confidence 5666666543 4556667778999999999887776665311 111 234457788888777766655
No 120
>COG5266 CbiK ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=64.34 E-value=21 Score=38.25 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=42.9
Q ss_pred EEEEEEcCCCCccCccEEEEEeCC----------C--c-eeeeeEecCceeEEEcCCCCCCeEEEEEEeec
Q 003526 560 ATGTITLLSGQPKDGVSVEARSES----------K--G-YYEETVTDTSGSYRLRGLHPDTTYVIKVVKKD 617 (813)
Q Consensus 560 v~G~V~~~~G~p~~gv~V~a~~~~----------~--~-~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~~~ 617 (813)
..|+|.+- |.|++|++|.+.-.+ + . ..-.-.||.+|.|.|--+..| .+-+.+.+.+
T Consensus 174 f~~~vl~~-GkPv~nA~V~v~~~n~~~~d~~a~~~~~ek~~~~~~TD~kG~~~fip~r~G-~W~~~~~~~~ 242 (264)
T COG5266 174 FRGKVLDN-GKPVPNATVEVEFDNIDTKDNRAKTGNTEKTALVQFTDDKGEVSFIPLRAG-VWGFAVEHKT 242 (264)
T ss_pred EEEEEEEC-CccCCCcEEEEEEecccccccccccCCCCCcceEEEcCCCceEEEEEccCc-eEEEEeeccC
Confidence 45778775 999999999987211 1 1 223467999999999999999 7998887654
No 121
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=64.29 E-value=18 Score=29.72 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=19.3
Q ss_pred eeCCCc-eEEeecCCCceEEEEEEeeC
Q 003526 691 SLPMSN-FFQVKDLPKGKHLLQLRSSL 716 (813)
Q Consensus 691 ~l~~~~-~F~~~~lp~G~Y~v~l~s~l 716 (813)
.+.... .+.+.+||+|+|+|.+++.-
T Consensus 23 ~~~~~~~~~~~~~L~~G~Y~l~V~a~~ 49 (66)
T PF07495_consen 23 TLGSYSNSISYTNLPPGKYTLEVRAKD 49 (66)
T ss_dssp EESSTS-EEEEES--SEEEEEEEEEEE
T ss_pred ECCCCcEEEEEEeCCCEEEEEEEEEEC
Confidence 344455 89999999999999999863
No 122
>PRK15207 long polar fimbrial outer membrane usher protein LpfC; Provisional
Probab=63.02 E-value=1.6e+02 Score=37.42 Aligned_cols=108 Identities=12% Similarity=0.088 Sum_probs=77.0
Q ss_pred eEecCCceEEeCccCCeeEE-EE--Ee--eccccccCCeeEEEecCCceEEEEEEEEEeeEEEEEEEEcCCCCccC-ccE
Q 003526 503 SVSWAGGSFHFDNLFPGNFY-LR--PL--LKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 576 (813)
Q Consensus 503 ~~Td~~G~f~f~~L~PG~Y~-v~--~~--~~ey~f~P~s~~V~V~~G~~~~v~~~~~r~~~sv~G~V~~~~G~p~~-gv~ 576 (813)
..||..|...+.+|.|=... |. +. ..+..+.-..+.|.-..|....+.|...+ ...+-=++++.+|+|+| |+.
T Consensus 698 ~~Td~~G~AvVP~l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~GAiv~v~F~~~~-g~~~ll~l~~~~G~~lP~Ga~ 776 (842)
T PRK15207 698 VEVDWMGNAVVPYLTPYRETEVSLRSDSLGQNVDLQEAFQKVVPTRGAIVRARFDTRV-GYRVLMSLKQANGNAVPFGAT 776 (842)
T ss_pred ceECCCCeEEeCCCCcceeeeEEECCcCCCCCeEecccEEEEEecCCcEEEEEEEEee-eeEEEEEEEcCCCCcCCccEE
Confidence 58999999999999875432 22 21 12344444566777788998888887654 34677788999999998 887
Q ss_pred EEEEeCCCceeeeeEecCceeEEEcCCCCCCeEEEEEEe
Q 003526 577 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVK 615 (813)
Q Consensus 577 V~a~~~~~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~ 615 (813)
|.+.+..+ ........+|.--|++|.+.. ++.++.
T Consensus 777 V~~~~~~~--~~~g~Vg~~G~vyl~gl~~~~--~l~v~w 811 (842)
T PRK15207 777 ATLIDTTK--EASSIVGEEGQLYISGMPEEG--ELQVSW 811 (842)
T ss_pred EEecCCCC--ceEEEECCCCEEEEEcCCCCc--eEEEEE
Confidence 76644332 234788999999999998775 445554
No 123
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=62.65 E-value=69 Score=26.87 Aligned_cols=42 Identities=21% Similarity=0.356 Sum_probs=30.6
Q ss_pred EeecCCCceEEEEEEeeCCCCceeeeeeeEEEEEEecceEEEeeeeEee
Q 003526 699 QVKDLPKGKHLLQLRSSLPSSTHRFESEIIEVDLEKNAQIHVGPLRYSV 747 (813)
Q Consensus 699 ~~~~lp~G~Y~v~l~s~l~~~~~~y~~~~~~v~~~~~~~~~~~~l~~~~ 747 (813)
.+..|+.|.|.|+++..- |......+.+.++....+ .+.+++
T Consensus 28 ~~~~l~~G~~~v~v~~~G------y~~~~~~v~v~~~~~~~v-~~~L~~ 69 (71)
T PF08308_consen 28 TLKDLPPGEHTVTVEKPG------YEPYTKTVTVKPGETTTV-NVTLEP 69 (71)
T ss_pred eeeecCCccEEEEEEECC------CeeEEEEEEECCCCEEEE-EEEEEE
Confidence 455578999999999743 555577788888887766 566654
No 124
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=61.38 E-value=36 Score=31.43 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=24.8
Q ss_pred ceEEEEEEcCcccccCcceeeEEEecCC---ceEEEeecCCccEEEEEEe
Q 003526 120 LVTVTLMRLGQKHYDGTEKKTVSLTDDS---DQFLFRDVLPGKYRLEVKR 166 (813)
Q Consensus 120 ~v~VtL~~~~~~~~~~~~~~~~~~t~~~---g~f~F~~VlPG~Y~v~v~~ 166 (813)
.|+|++.+..|. ......+.... -.+...+...|.|.|.+..
T Consensus 49 ~vtI~I~d~~G~-----vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~ 93 (106)
T PF11589_consen 49 DVTITIKDSTGN-----VVYSETVSNSAGQSITIDLNGLPSGEYTLEITN 93 (106)
T ss_dssp EEEEEEEETT-------EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEE
T ss_pred CEEEEEEeCCCC-----EEEEEEccCCCCcEEEEEeCCCCCccEEEEEEe
Confidence 677777774443 22223333222 4788888999999999983
No 125
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=59.87 E-value=21 Score=31.27 Aligned_cols=61 Identities=13% Similarity=0.228 Sum_probs=39.8
Q ss_pred cceEEEEEcCccceeeeEecCCceEEeCccCCee---EEEEEee-ccccccCCeeEEEecCCceEEEEE
Q 003526 487 PSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGN---FYLRPLL-KEYAFSPPAQAIELGSGESREVIF 551 (813)
Q Consensus 487 ~Gv~vsLsg~~~~r~~~~Td~~G~f~f~~L~PG~---Y~v~~~~-~ey~f~P~s~~V~V~~G~~~~v~~ 551 (813)
+++.|++.|.+ ...++..=+|.=..|++|. |.|++.. .+-.-.+..+.|.|+.|+..+++|
T Consensus 11 adAkl~v~G~~----t~~~G~~R~F~T~~L~~G~~y~Y~v~a~~~~dG~~~t~~~~V~vrAGd~~~v~f 75 (75)
T TIGR03000 11 ADAKLKVDGKE----TNGTGTVRTFTTPPLEAGKEYEYTVTAEYDRDGRILTRTRTVVVRAGDTVTVDF 75 (75)
T ss_pred CCCEEEECCeE----cccCccEEEEECCCCCCCCEEEEEEEEEEecCCcEEEEEEEEEEcCCceEEeeC
Confidence 45788886653 2334555578888999997 6677643 222333456778888888877664
No 126
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=59.41 E-value=23 Score=28.71 Aligned_cols=43 Identities=21% Similarity=0.505 Sum_probs=30.7
Q ss_pred eeeeCCCCcEEEEec---CcceEEEEeecCCCCCCceEEeCceEEEEeC
Q 003526 47 VKQTDNNGNFCFEVP---PGEYRLSAMAATPESSSGILFLPPYADVVVK 92 (813)
Q Consensus 47 t~~t~~~G~Fcf~l~---pG~Y~l~v~~~~~e~~~Gl~F~P~~~~v~V~ 92 (813)
+...+++|.|.+.+| -|+|.+++...+.-+..+ .+..+.++||
T Consensus 5 ~~t~~~~G~Ws~t~~~~~dG~y~itv~a~D~AGN~s---~~~~~~~tiD 50 (54)
T PF13754_consen 5 TTTVDSDGNWSFTVPALADGTYTITVTATDAAGNTS---TSSSVTFTID 50 (54)
T ss_pred EEEECCCCcEEEeCCCCCCccEEEEEEEEeCCCCCC---CccceeEEEe
Confidence 455689999999766 799999999987544443 4445556664
No 127
>COG3188 FimD P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=56.48 E-value=4.7e+02 Score=33.26 Aligned_cols=109 Identities=19% Similarity=0.178 Sum_probs=79.5
Q ss_pred eeEecCCceEEeCccCCeeEE-EEE----eeccccccCCeeEEEecCCceEEEEEEEEEeeEEEEEEEEcCCCCccC-cc
Q 003526 502 NSVSWAGGSFHFDNLFPGNFY-LRP----LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GV 575 (813)
Q Consensus 502 ~~~Td~~G~f~f~~L~PG~Y~-v~~----~~~ey~f~P~s~~V~V~~G~~~~v~~~~~r~~~sv~G~V~~~~G~p~~-gv 575 (813)
...||..|.-.++.|.|=.+. |.. +..+....-..+.|...+|...-++|... ....+--+++..+|.|++ |+
T Consensus 693 ~~~Td~~G~avvP~lspY~~n~v~lD~~~Lp~dvel~~~~~~v~Pt~GAvv~~~F~t~-~g~~~li~l~~~dG~~lPfGa 771 (835)
T COG3188 693 GVRTDRRGYAVVPYLTPYRENRVSLDPNNLPDDVELENTVQNVVPTEGAVVLADFDTR-IGYRALITLRRADGSPLPFGA 771 (835)
T ss_pred CcEEcCCCcEeccCcccceeceEEEccccCCCceEecccEEEEEEcCCeEEEEEEeee-ceeEEEEEEECCCCCcCCCce
Confidence 367999999999888875542 221 22334445567778888999988888764 667788999999999977 56
Q ss_pred EEEEEeCCCceeeeeEecCceeEEEcCCCCCCeEEEEEEee
Q 003526 576 SVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKK 616 (813)
Q Consensus 576 ~V~a~~~~~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~~ 616 (813)
.|...... ......+.+|+.-|+||.++. ++.++..
T Consensus 772 ~v~~~~~~---~~~g~Vg~~G~vyl~gl~~~~--~L~V~wg 807 (835)
T COG3188 772 EVTDEGGG---QNVGIVGDDGQVYLRGLPPKG--RLLVRWG 807 (835)
T ss_pred EEEECCCc---eEEEEEecCCeEEEecCCCCC--eEEEEEC
Confidence 65543221 157889999999999999995 6677653
No 128
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=56.30 E-value=1.1e+02 Score=30.55 Aligned_cols=102 Identities=17% Similarity=0.268 Sum_probs=49.2
Q ss_pred ecCcceEEEE-eecCCCCCCceEEeCceEEEEeC--CCccceEE-------EEEEeEEEEEEEeccCCCCceEEEEEEcC
Q 003526 60 VPPGEYRLSA-MAATPESSSGILFLPPYADVVVK--SPLLNIEF-------SQALVNVLGNVACKERCGPLVTVTLMRLG 129 (813)
Q Consensus 60 l~pG~Y~l~v-~~~~~e~~~Gl~F~P~~~~v~V~--~p~~di~F-------sq~~~sv~G~V~c~~~c~~~v~VtL~~~~ 129 (813)
+|-|.|+|++ .+.+.-+..+ =......+.+| .|...|.+ ....+.++-.|.+.+.-. ...|+.....
T Consensus 12 l~dG~Y~l~~~~a~D~agN~~--~~~~~~~~~iD~T~Ptisi~~~~~~~~g~~v~~~~~i~i~~tD~~~-~~~i~sv~l~ 88 (158)
T PF13750_consen 12 LPDGSYTLTVVTATDAAGNTS--TSTVSETFTIDNTPPTISISDGASVANGSTVYGLVNISINVTDNSD-DSKITSVSLT 88 (158)
T ss_pred CCCccEEEEEEEEEecCCCEE--EEEEeeEEEEcCCCCEEEEecCCccCCCccccceeeeEEEEEeCCC-CceEEEEEEE
Confidence 7899999999 5654322221 12222245554 57777722 112222333344444333 2245544444
Q ss_pred cccccCcceeeEEEe-cCCceEEE--eecCC----c-cEEEEEEe
Q 003526 130 QKHYDGTEKKTVSLT-DDSDQFLF--RDVLP----G-KYRLEVKR 166 (813)
Q Consensus 130 ~~~~~~~~~~~~~~t-~~~g~f~F--~~VlP----G-~Y~v~v~~ 166 (813)
++. ..+.+.+.++ ..+|.|.+ ..+.| | .|+|+|..
T Consensus 89 Gg~--~~d~v~ls~~~~~~~~~~~~yp~~fpsle~~~~YtLtV~a 131 (158)
T PF13750_consen 89 GGP--ASDSVSLSWTNKGNGVYTLEYPRIFPSLEADDSYTLTVSA 131 (158)
T ss_pred CCc--ccceEEEeeEeccCceEEeecccccCCcCCCCeEEEEEEE
Confidence 431 0123333333 33456654 34554 3 68888874
No 129
>PRK15223 pilin outer membrane usher protein SafC; Provisional
Probab=54.02 E-value=2.4e+02 Score=35.81 Aligned_cols=107 Identities=18% Similarity=0.108 Sum_probs=74.4
Q ss_pred eEecCCceEEeCccCCeeE---EEEEe--eccccccCCeeEEEecCCceEEEEEEEEEeeEEEEEEEEcCCCCccC-ccE
Q 003526 503 SVSWAGGSFHFDNLFPGNF---YLRPL--LKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 576 (813)
Q Consensus 503 ~~Td~~G~f~f~~L~PG~Y---~v~~~--~~ey~f~P~s~~V~V~~G~~~~v~~~~~r~~~sv~G~V~~~~G~p~~-gv~ 576 (813)
..||..|...++.|.|=.. .|.+. ..+..+.-..+.|.-..|....+.|...+ ...+--++++.+|.|+| |+.
T Consensus 696 ~~Td~~G~AvvP~l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~GAiv~~~F~~~~-g~~~ll~l~~~~G~~lP~Ga~ 774 (836)
T PRK15223 696 VKTDFRGDTTVGNLNVYQENTVSLDPSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRI-GARALMTLKREDGSAIPFGAQ 774 (836)
T ss_pred CEECCCCeEEeCCCCCceeceEEECCCCCCCCEEecCcEEEEEecCCcEEEEEEEEee-eEEEEEEEECCCCCcCCCCeE
Confidence 6899999999999987443 22221 12234444566677788998888887654 45677888999999886 565
Q ss_pred EEEEeCCCceeeeeEecCceeEEEcCCCCCCeEEEEEEe
Q 003526 577 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVK 615 (813)
Q Consensus 577 V~a~~~~~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~ 615 (813)
|... .++ ........+|.--|++|.|... +.++.
T Consensus 775 v~~~-~~g--~~~g~Vg~~G~vyl~g~~~~~~--l~v~w 808 (836)
T PRK15223 775 VTVN-GQD--GSAALVDTDSQVYLTGLADKGE--LTVKW 808 (836)
T ss_pred EEec-CCC--ceEEEECCCCEEEEEccCCCce--EEEEE
Confidence 5442 222 1457889999999999998754 44443
No 130
>PRK15207 long polar fimbrial outer membrane usher protein LpfC; Provisional
Probab=53.44 E-value=93 Score=39.39 Aligned_cols=96 Identities=13% Similarity=0.140 Sum_probs=62.6
Q ss_pred eEeCCCccEEeccCCCCceEEEEEeCCC----eeeeecC----C-------cceeeeeeceEEEEEEccCCCCCCcc-ce
Q 003526 426 TSTGADGSFIGGPLYDDITYNVEASKPG----YYLRQVG----P-------NSFSCQKLSQISVRIYSKDDAGEPIP-SV 489 (813)
Q Consensus 426 t~Td~~G~f~~~~L~~~g~Y~i~A~k~g----y~~~~~~----~-------~~f~~~~l~~I~g~V~d~~~~g~Pl~-Gv 489 (813)
+.||..|.=.+..|.|=..-+|...... ..+.... | ..|...+.-.+-+++++++ |+||| |+
T Consensus 698 ~~Td~~G~AvVP~l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~GAiv~v~F~~~~g~~~ll~l~~~~--G~~lP~Ga 775 (842)
T PRK15207 698 VEVDWMGNAVVPYLTPYRETEVSLRSDSLGQNVDLQEAFQKVVPTRGAIVRARFDTRVGYRVLMSLKQAN--GNAVPFGA 775 (842)
T ss_pred ceECCCCeEEeCCCCcceeeeEEECCcCCCCCeEecccEEEEEecCCcEEEEEEEEeeeeEEEEEEEcCC--CCcCCccE
Confidence 6999999999988886222244443322 2222110 1 3566666666677888876 99999 99
Q ss_pred EEEEEcCccceeeeEecCCceEEeCccCC-eeEEEE
Q 003526 490 LLSLSGDDGYRNNSVSWAGGSFHFDNLFP-GNFYLR 524 (813)
Q Consensus 490 ~vsLsg~~~~r~~~~Td~~G~f~f~~L~P-G~Y~v~ 524 (813)
.|.+.+.++ .....-..+|..-+.+|++ |...|+
T Consensus 776 ~V~~~~~~~-~~~g~Vg~~G~vyl~gl~~~~~l~v~ 810 (842)
T PRK15207 776 TATLIDTTK-EASSIVGEEGQLYISGMPEEGELQVS 810 (842)
T ss_pred EEEecCCCC-ceEEEECCCCEEEEEcCCCCceEEEE
Confidence 998766543 2335678899988888885 455554
No 131
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=53.07 E-value=40 Score=35.67 Aligned_cols=25 Identities=32% Similarity=0.431 Sum_probs=17.6
Q ss_pred eeeeEecCceeEEEcCCCCCCeEEEEEEee
Q 003526 587 YEETVTDTSGSYRLRGLHPDTTYVIKVVKK 616 (813)
Q Consensus 587 ~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~~ 616 (813)
..+...|.+|. .|++| .|++++.+.
T Consensus 155 f~WDG~d~~G~----~lp~G-~Yt~~V~A~ 179 (225)
T PRK06655 155 FTWDGTDTDGN----ALPDG-NYTIKASAS 179 (225)
T ss_pred EEECCCCCCCC----cCCCe-eEEEEEEEE
Confidence 34556677776 47889 699998753
No 132
>PRK15235 outer membrane fimbrial usher protein SefC; Provisional
Probab=52.14 E-value=1.3e+02 Score=38.01 Aligned_cols=98 Identities=19% Similarity=0.249 Sum_probs=62.5
Q ss_pred eeEeCCCccEEeccCCCCceEEEEEeCC----CeeeeecC----C-------cceeeeeeceEEEEEEccCCCCCCcc-c
Q 003526 425 ETSTGADGSFIGGPLYDDITYNVEASKP----GYYLRQVG----P-------NSFSCQKLSQISVRIYSKDDAGEPIP-S 488 (813)
Q Consensus 425 ~t~Td~~G~f~~~~L~~~g~Y~i~A~k~----gy~~~~~~----~-------~~f~~~~l~~I~g~V~d~~~~g~Pl~-G 488 (813)
.+.||.+|.=.+.+|.|=-.-+|+.... +..+.... | ..|...+.-.+-.++.+++ |+||| |
T Consensus 668 ~~~Td~~G~avvp~l~pY~~N~i~iD~~~LP~dvei~~t~~~vvPt~GAvv~~~F~~~~g~~~ll~l~~~~--G~~lPfG 745 (814)
T PRK15235 668 GVRTDFRGYTISSYLTPYMNNFISIDPTTLPINTDIRQTDIQVVPTEGAIVKAVYKTSVGTNALIRITRTN--GKPLALG 745 (814)
T ss_pred CCEECCCCeEEeCCCCCceeceEEecccCCCCCeEecccEEEEEecCCcEEEEEEEEeeeeEEEEEEECCC--CCcCCCc
Confidence 4799999999998887522223444322 22222110 1 3566666666677888876 99999 9
Q ss_pred eEEEEEcCccc-eeeeEecCCceEEeCccCCe-eEEEE
Q 003526 489 VLLSLSGDDGY-RNNSVSWAGGSFHFDNLFPG-NFYLR 524 (813)
Q Consensus 489 v~vsLsg~~~~-r~~~~Td~~G~f~f~~L~PG-~Y~v~ 524 (813)
+.|.+.+.++. ......+.+|..-+.+|+|. ...|+
T Consensus 746 a~V~~~~~~g~~~~~g~Vg~~G~vyl~gl~~~~~L~v~ 783 (814)
T PRK15235 746 TVLSLKNNDGVIQSTSIVGEDGQAYVSGLSGVQKLIAS 783 (814)
T ss_pred eEEEecCCCCceeeeEEEcCCCEEEEEcCCCCceEEEE
Confidence 99887544331 23467789999888888875 45554
No 133
>PRK15298 fimbrial outer membrane usher protein StiC; Provisional
Probab=51.78 E-value=2.8e+02 Score=35.20 Aligned_cols=108 Identities=15% Similarity=0.163 Sum_probs=72.5
Q ss_pred eEecCCceEEeCccCCeeEE-E--EEe--eccccccCCeeEEEecCCceEEEEEEEEEeeEEEEEEEEcCCCCccC-ccE
Q 003526 503 SVSWAGGSFHFDNLFPGNFY-L--RPL--LKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 576 (813)
Q Consensus 503 ~~Td~~G~f~f~~L~PG~Y~-v--~~~--~~ey~f~P~s~~V~V~~G~~~~v~~~~~r~~~sv~G~V~~~~G~p~~-gv~ 576 (813)
..||..|...+++|.|=... | .+. ..+..+.-..+.|.-..|....+.|...+ ...+-=++++.+|+|+| |+.
T Consensus 707 ~~Td~~G~AvvP~l~pY~~N~i~iD~~~LP~dvei~~t~~~vvPt~GAvv~~~F~~~~-g~~~ll~l~~~~G~~lP~Ga~ 785 (848)
T PRK15298 707 VATDFRGYTVIPNVTPYYRYDISLDSSTFADNVDIPLNNQTVYPTRNAVVRAAYDTHK-GYRVLLTLTRSNGEPVPFGAT 785 (848)
T ss_pred CEECCCCeEEeCCCCccceeeEEECCCCCCCCeEecccEEEecccCCeEEEEEEEEEe-eEEEEEEEECCCCCcCCCCcE
Confidence 58999999999999874432 2 221 12233444456666678888888887654 34667778899999986 666
Q ss_pred EEEEeCCCceeeeeEecCceeEEEcCCCCCCeEEEEEEe
Q 003526 577 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVK 615 (813)
Q Consensus 577 V~a~~~~~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~ 615 (813)
|.+.+.++ ........+|.--|++|.+... +.++.
T Consensus 786 v~~~~~~~--~~~g~Vg~~G~vyl~g~~~~~~--l~v~w 820 (848)
T PRK15298 786 ASVDGQDA--NLASIVGDKGQVFLSGLPEEGL--LLVNW 820 (848)
T ss_pred EEEcCCCC--eeEEEECCCCEEEEEecCCCce--EEEEE
Confidence 65422211 2347889999999999987753 44544
No 134
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=51.07 E-value=1.4e+02 Score=24.76 Aligned_cols=44 Identities=14% Similarity=0.344 Sum_probs=30.1
Q ss_pred CceEEEEEEcCcccccCcceeeEEEecCCceEEEeecCCcc-EEEEEEe
Q 003526 119 PLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGK-YRLEVKR 166 (813)
Q Consensus 119 ~~v~VtL~~~~~~~~~~~~~~~~~~t~~~g~f~F~~VlPG~-Y~v~v~~ 166 (813)
.+-.|.....+.. .......+......|.+.++.||+ |+++|..
T Consensus 31 ~~y~v~~~~~~~~----~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a 75 (85)
T PF00041_consen 31 TGYRVEYRSVNST----SDWQEVTVPGNETSYTITGLQPGTTYEFRVRA 75 (85)
T ss_dssp SEEEEEEEETTSS----SEEEEEEEETTSSEEEEESCCTTSEEEEEEEE
T ss_pred eEEEEEEEecccc----eeeeeeeeeeeeeeeeeccCCCCCEEEEEEEE
Confidence 4567777666543 123334455555699999999999 9999874
No 135
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=50.53 E-value=6.7e+02 Score=32.36 Aligned_cols=184 Identities=13% Similarity=0.090 Sum_probs=88.8
Q ss_pred eeeeeEeCCCccEEeccCCC-CceEEEEEeCCCeeeeecC-----Cccee----eeeeceEEEEEEccCCCCCCccceEE
Q 003526 422 LALETSTGADGSFIGGPLYD-DITYNVEASKPGYYLRQVG-----PNSFS----CQKLSQISVRIYSKDDAGEPIPSVLL 491 (813)
Q Consensus 422 ~~~~t~Td~~G~f~~~~L~~-~g~Y~i~A~k~gy~~~~~~-----~~~f~----~~~l~~I~g~V~d~~~~g~Pl~Gv~v 491 (813)
..+.-.-+.||++.+..+++ .|.|.|.+...+-++...- ..++. ..+++.+.-....- +..++..-++
T Consensus 620 aei~c~dn~Dgt~~vsy~P~vpG~y~i~V~~~~k~vpgSPF~~~Vt~~~s~r~s~~~Vgs~~ev~in~--~~~~~s~lta 697 (1113)
T KOG0518|consen 620 AEIRCYDNKDGTCSVSYTPTVPGVYKIEVKFGDKHVPGSPFVALVTGDESIRTSHLSVGSIHEVTINI--TEADLSVLTA 697 (1113)
T ss_pred cceeEEeCCCCcEEeccCCCCCceEEEEEEECCeeCCCCCceEEEecccccccccceecceeeEEeec--cccCCceeEE
Confidence 45667888999999876652 2899999987766654210 01122 12233322122211 1445555454
Q ss_pred EEEcCcc--ceeeeEecCCceEE--eCccCCeeEEEEEeeccccccCCeeEEEecCCceEEEEEEEEEeeEEEEEEEEcC
Q 003526 492 SLSGDDG--YRNNSVSWAGGSFH--FDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLL 567 (813)
Q Consensus 492 sLsg~~~--~r~~~~Td~~G~f~--f~~L~PG~Y~v~~~~~ey~f~P~s~~V~V~~G~~~~v~~~~~r~~~sv~G~V~~~ 567 (813)
++....+ .+....--.+|.|. |.-=.+|.+.+.....+...--+-+.|.|.+-+. .+.++ .++|+..+.
T Consensus 698 eI~~PsGn~~~c~~r~l~~g~~~itF~P~e~GeH~I~Vk~~G~hVpgsPf~i~V~~~e~-----dAsk~--~v~g~g~~~ 770 (1113)
T KOG0518|consen 698 EIVDPSGNPEPCLVRRLPNGHDGITFTPREVGEHKINVKVAGKHVPGSPFSIKVSESEI-----DASKV--RVSGQGLKE 770 (1113)
T ss_pred EEECCCCCccceeeEecCCCceeEEECCCcCcceEEEEEEcceECCCCCeEEEeccccc-----cceeE--EEecccccc
Confidence 5443322 12222223445333 3333467777776666544333334455554322 11122 144444332
Q ss_pred C-------------CCccCccEEEEEeCCCceeeeeEecCceeEEE--cCCCCCCeEEEEEEee
Q 003526 568 S-------------GQPKDGVSVEARSESKGYYEETVTDTSGSYRL--RGLHPDTTYVIKVVKK 616 (813)
Q Consensus 568 ~-------------G~p~~gv~V~a~~~~~~~~~~a~TD~~G~fr~--~gL~PG~~Y~V~v~~~ 616 (813)
. -.+--|+.|.+.+.++- --...-.+||.++. --=.|| .|.|.++-.
T Consensus 771 G~t~ep~~fivDtr~agyGgLsi~~~Gpskv-d~~~~d~~dGt~kV~ytPtepG-~Y~I~i~Fa 832 (1113)
T KOG0518|consen 771 GHTFEPAEFIVDTRKAGYGGLSISVQGPSKV-DLNVEDREDGTCKVSYTPTEPG-TYIINIKFA 832 (1113)
T ss_pred cccccchheEeccccCCCCceEEEEeCCccc-ccceeecCCCeEEEEEeCCCCc-eEEEEEEEc
Confidence 1 12223455555544311 01223345566654 455689 599998853
No 136
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=50.41 E-value=2.5e+02 Score=32.07 Aligned_cols=111 Identities=13% Similarity=0.074 Sum_probs=49.3
Q ss_pred CceeEEE---cCCCCCCeEEEEEEeecCCCCcceeccCCceEEEEecCccccCceEEEeecC-ceEEEEEEEEccccccc
Q 003526 594 TSGSYRL---RGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGLDFLVFEQP-EKTILSGHVEGNRIKEL 669 (813)
Q Consensus 594 ~~G~fr~---~gL~PG~~Y~V~v~~~~~~~~~~~~~~~p~~~~V~V~~~dv~gv~f~~~~~~-~~~~vsg~V~~s~~~~~ 669 (813)
.||.|+- ....|| .|.+.+.+. +.-+.|..- ..|.|...-+. ++|+.-+.. ..+.|..++.....+..
T Consensus 169 ~DGvFT~~l~l~~~~G-~Y~~~v~~~----n~vF~R~~~--q~v~V~p~Pi~-~~~~~~~~~~~~h~l~v~~d~~~i~~~ 240 (374)
T TIGR03503 169 GDGIFTGEFNLDVAPG-EYRPTYQSR----NPVFLREVE--QPVLVYPLPVS-YTVIQSEDESGAHQLMVDADAGHIDPG 240 (374)
T ss_pred CCceEEEEeeccCCCc-eEEEEEEEc----CceEEEEEE--EeEEEECCCee-EEEEccCCCCCceEEEEEcccceeccc
Confidence 4566654 356799 699999874 334444321 23333333332 344322211 11233333322222221
Q ss_pred cccEEEEEEecCCCCceEEE-EeeCC-CceEEeecCCC-ceEEEEEEe
Q 003526 670 NSHLLVEIKSASDTSKVESV-ISLPM-SNFFQVKDLPK-GKHLLQLRS 714 (813)
Q Consensus 670 ~~~l~v~l~~~~~~~~v~~~-~~l~~-~~~F~~~~lp~-G~Y~v~l~s 714 (813)
--.+..+++..+ +..... ..... ...+.+|.... |+|.+...-
T Consensus 241 s~~~~~~~~~P~--g~~~~~~~~~~~~~~~~~l~~~~~~G~Y~i~~~~ 286 (374)
T TIGR03503 241 SLVIHGELVFPN--GQIQQFSIELEEPETRVDLPANYEFGKYRVKGTV 286 (374)
T ss_pred cEEEEEEEECCC--CceEEecccCccCceEEeccCcCCCeEEEEEEEE
Confidence 113333443222 222221 12222 22577765555 899988764
No 137
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=50.10 E-value=16 Score=35.57 Aligned_cols=26 Identities=27% Similarity=0.717 Sum_probs=19.2
Q ss_pred eecCCccEEEEEEeeccccccCCCCeEEEee
Q 003526 153 RDVLPGKYRLEVKRTSREASSMEDNWCWEQS 183 (813)
Q Consensus 153 ~~VlPG~Y~v~v~~~~~~~~~~~~~wcw~~~ 183 (813)
+.+.||+|++.+... +....|.|++.
T Consensus 101 ~~lk~G~Y~l~~~~~-----~~~~~W~f~k~ 126 (140)
T PF11797_consen 101 KKLKPGKYTLKITAK-----SGKKTWTFTKD 126 (140)
T ss_pred cCccCCEEEEEEEEE-----cCCcEEEEEEE
Confidence 378899999988643 33568999763
No 138
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=50.06 E-value=44 Score=29.24 Aligned_cols=53 Identities=23% Similarity=0.248 Sum_probs=28.4
Q ss_pred EEEEEEEcCCCCccCccEEEEEeCCCceeeeeEecCceeEEEcCCCCCCeEEEEEEee
Q 003526 559 SATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKK 616 (813)
Q Consensus 559 sv~G~V~~~~G~p~~gv~V~a~~~~~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~~ 616 (813)
.+.=.|.|.+|+-+....+.....+.....+-.+|.+|. .|++| .|++++.+.
T Consensus 26 ~v~v~I~d~~G~~V~t~~~~~~~~G~~~~~WdG~d~~G~----~~~~G-~Y~~~v~a~ 78 (81)
T PF13860_consen 26 NVTVTIYDSNGQVVRTISLGSQSAGEHSFTWDGKDDDGN----PVPDG-TYTFRVTAT 78 (81)
T ss_dssp EEEEEEEETTS-EEEEEEEEECSSEEEEEEE-SB-TTS-----B--SE-EEEEEEEEE
T ss_pred EEEEEEEcCCCCEEEEEEcCCcCCceEEEEECCCCCCcC----CCCCC-CEEEEEEEE
Confidence 455566677777664444432222112445666788887 68889 699999874
No 139
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=50.04 E-value=26 Score=32.84 Aligned_cols=37 Identities=38% Similarity=0.434 Sum_probs=24.9
Q ss_pred eCCCCcEEEEecCcceEEEEeecCCCCCCceEEeCceEEEEe
Q 003526 50 TDNNGNFCFEVPPGEYRLSAMAATPESSSGILFLPPYADVVV 91 (813)
Q Consensus 50 t~~~G~Fcf~l~pG~Y~l~v~~~~~e~~~Gl~F~P~~~~v~V 91 (813)
+.++++|.+.+|||+|+|+...+- .++ +.+..+++++
T Consensus 55 l~~g~y~~~~v~pG~h~i~~~~~~----~~~-~~~~~l~~~~ 91 (117)
T PF11008_consen 55 LKNGGYFYVEVPPGKHTISAKSEF----SSS-PGANSLDVTV 91 (117)
T ss_pred eCCCeEEEEEECCCcEEEEEecCc----cCC-CCccEEEEEE
Confidence 557778877899999999996541 111 1346666666
No 140
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=50.03 E-value=58 Score=28.95 Aligned_cols=51 Identities=22% Similarity=0.314 Sum_probs=31.5
Q ss_pred ccceEEEEEcCccceeeeEecCCceEEeCccC-----CeeEEEEEeeccccccCCeeEEE
Q 003526 486 IPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLF-----PGNFYLRPLLKEYAFSPPAQAIE 540 (813)
Q Consensus 486 l~Gv~vsLsg~~~~r~~~~Td~~G~f~f~~L~-----PG~Y~v~~~~~ey~f~P~s~~V~ 540 (813)
.+|+.|.|+.+......++++ +|.+.+ +|. +|.|.|....-.| .|-.+.|.
T Consensus 25 ~~gs~ValS~dg~l~G~ai~~-sG~ati-~l~~~it~~~~~tlTit~~n~--~t~i~~i~ 80 (81)
T PF03785_consen 25 VPGSYVALSQDGDLYGKAIVN-SGNATI-NLTNPITDEGTLTLTITAFNY--VTYIKTIQ 80 (81)
T ss_dssp STT-EEEEEETTEEEEEEE-B-TTEEEE-E-SS--TT-SEEEEEEE-TTB----EEEEEE
T ss_pred CCCcEEEEecCCEEEEEEEec-CceEEE-ECCcccCCCceEEEEEEEEcc--EEEEEEee
Confidence 467888888664455667888 999999 676 8899998775443 35455444
No 141
>PF14289 DUF4369: Domain of unknown function (DUF4369)
Probab=49.99 E-value=1.1e+02 Score=27.39 Aligned_cols=49 Identities=33% Similarity=0.489 Sum_probs=30.6
Q ss_pred eeEEEEEEEEEccCCceEEEEE--ecCCCcccceeeeeCCCCcEEEEec---CcceEE
Q 003526 15 ISYDICGVVRTVGSGNKVKVAL--THGPDKVKPQVKQTDNNGNFCFEVP---PGEYRL 67 (813)
Q Consensus 15 ~~~~vCG~V~~~~~~~~~~v~l--t~g~~~~k~~t~~t~~~G~Fcf~l~---pG~Y~l 67 (813)
..|.|-|++.....+ .+|-| .++.. ...-+.... ||.|.|..+ |+.|.|
T Consensus 11 ~~~~I~G~i~~~~~~--~~vyL~~~~~~~-~~~ds~~v~-nG~F~f~~~~~~p~~~~l 64 (106)
T PF14289_consen 11 KQFTIEGKIKGLPDG--DKVYLYYYDNGK-VVIDSVVVK-NGKFSFKGPLDEPGFYYL 64 (106)
T ss_pred CcEEEEEEEcCCCCC--CEEEEEEeCCCC-EEEEEEEEe-CCEEEEEEeCCCCEEEEE
Confidence 579999999754233 34555 23322 222233444 999999744 999999
No 142
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=47.62 E-value=19 Score=33.77 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=20.7
Q ss_pred EecCCceEEEeecCCccEEEEEEe
Q 003526 143 LTDDSDQFLFRDVLPGKYRLEVKR 166 (813)
Q Consensus 143 ~t~~~g~f~F~~VlPG~Y~v~v~~ 166 (813)
..+...++.|+++.||+|-|.+-|
T Consensus 38 ~~~~~~~~~f~~lp~G~YAi~v~h 61 (112)
T PF09912_consen 38 AKGGTVTITFEDLPPGTYAIAVFH 61 (112)
T ss_pred cCCCcEEEEECCCCCccEEEEEEE
Confidence 345678999999999999999985
No 143
>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.
Probab=47.57 E-value=25 Score=31.78 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=27.3
Q ss_pred CCCccceEEEEEcCc-----cceeeeEecCCceEEeCccCCee
Q 003526 483 GEPIPSVLLSLSGDD-----GYRNNSVSWAGGSFHFDNLFPGN 520 (813)
Q Consensus 483 g~Pl~Gv~vsLsg~~-----~~r~~~~Td~~G~f~f~~L~PG~ 520 (813)
..||+||.|.|.=.+ .+.....||++|.|.+ .|+...
T Consensus 18 ~~~l~GA~V~v~C~~~~~~~~~~~~~~Td~~G~F~i-~l~~~~ 59 (97)
T PF01190_consen 18 AKPLPGAKVSVECKDGNGGVVFSAEAKTDENGYFSI-ELPSDP 59 (97)
T ss_pred CccCCCCEEEEECCCCCCCcEEEEEEEeCCCCEEEE-EecCcc
Confidence 579999999997222 2345689999999999 665443
No 144
>PRK15294 putative fimbrial outer membrane usher protein SthC; Provisional
Probab=47.54 E-value=3.2e+02 Score=34.74 Aligned_cols=106 Identities=14% Similarity=0.143 Sum_probs=72.9
Q ss_pred eEecCCceEEeCccCCeeE---EEEEe--eccccccCCeeEEEecCCceEEEEEEEEEeeEEEEEEEEcCCCCccC-ccE
Q 003526 503 SVSWAGGSFHFDNLFPGNF---YLRPL--LKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 576 (813)
Q Consensus 503 ~~Td~~G~f~f~~L~PG~Y---~v~~~--~~ey~f~P~s~~V~V~~G~~~~v~~~~~r~~~sv~G~V~~~~G~p~~-gv~ 576 (813)
..||..|...+..|.|=.. .|.+. ..+..+.-..+.|.-..|....+.|...+. ..+-=++++.+|.|+| |+.
T Consensus 701 ~~Td~~G~AvvP~l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~GAiv~~~F~~~~g-~~~l~~l~~~~G~~lPfGa~ 779 (845)
T PRK15294 701 VDTDFRGYAVVPYASPYHRNEVSLDTTGIRKNIELIDTSKTLVPTRGAVVRAEYKTNIG-YKALMVLTRINNLPVPFGAT 779 (845)
T ss_pred CEECCCCeEEeCCCCccccceEEECCCCCCCCeEecccEEEEEecCCcEEEEEEEEeee-eEEEEEEECCCCCcCCceEE
Confidence 5899999999988886432 23222 223444445666777788888888877553 3667778899999986 666
Q ss_pred EEEEeCCCceeeeeEecCceeEEEcCCCCCCeEEE
Q 003526 577 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVI 611 (813)
Q Consensus 577 V~a~~~~~~~~~~a~TD~~G~fr~~gL~PG~~Y~V 611 (813)
|...+.++ ........+|.--|+||.+..+.+|
T Consensus 780 V~~~~~~g--~~~g~Vg~~G~vyl~gl~~~~~L~v 812 (845)
T PRK15294 780 VSSLTKPD--NHSSFVGDAGQAWLTGLEKQGRLLV 812 (845)
T ss_pred EEccCCCC--ceEEEEcCCCEEEEEcCCCCceEEE
Confidence 65322212 2457889999999999987654443
No 145
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=45.80 E-value=2.1e+02 Score=32.68 Aligned_cols=49 Identities=29% Similarity=0.398 Sum_probs=33.7
Q ss_pred eeCCCCcEEEEec----CcceEEEEeecCCCCCCceEEeCc-eEEEEeC-CCccceEEEEEE
Q 003526 49 QTDNNGNFCFEVP----PGEYRLSAMAATPESSSGILFLPP-YADVVVK-SPLLNIEFSQAL 104 (813)
Q Consensus 49 ~t~~~G~Fcf~l~----pG~Y~l~v~~~~~e~~~Gl~F~P~-~~~v~V~-~p~~di~Fsq~~ 104 (813)
..+.||-|...++ ||.|.+.+... .+ .|.-. ++.+.|. .|+ .++|.|.+
T Consensus 166 E~p~DGvFT~~l~l~~~~G~Y~~~v~~~-----n~-vF~R~~~q~v~V~p~Pi-~~~~~~~~ 220 (374)
T TIGR03503 166 ERPGDGIFTGEFNLDVAPGEYRPTYQSR-----NP-VFLREVEQPVLVYPLPV-SYTVIQSE 220 (374)
T ss_pred CCCCCceEEEEeeccCCCceEEEEEEEc-----Cc-eEEEEEEEeEEEECCCe-eEEEEccC
Confidence 4468999988654 99999999985 34 36555 5556674 454 37776543
No 146
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=45.44 E-value=8.6e+02 Score=32.12 Aligned_cols=270 Identities=16% Similarity=0.170 Sum_probs=126.8
Q ss_pred cEEeccCCCCceEEEEEeCCCeeeeec------------CCcceeeeeeceEEEEEEccC--CCCCCccceEEEEEcCcc
Q 003526 433 SFIGGPLYDDITYNVEASKPGYYLRQV------------GPNSFSCQKLSQISVRIYSKD--DAGEPIPSVLLSLSGDDG 498 (813)
Q Consensus 433 ~f~~~~L~~~g~Y~i~A~k~gy~~~~~------------~~~~f~~~~l~~I~g~V~d~~--~~g~Pl~Gv~vsLsg~~~ 498 (813)
.-.+.+|.+.+.|.+.+.+++=...-. +|..+.+...+...+.|+=+. -.+.|+.+-.+--+-++.
T Consensus 484 ~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pEgp~~~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~~~ 563 (1381)
T KOG4221|consen 484 QVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPEGPVQLQAYATSPTTILVTWEPPPFGNGPITGYKLFYSEDDT 563 (1381)
T ss_pred EEEeeecccceeEEEEEeccCcccCCccCCceEEecCCCCCccccccccCcceEEEEecCCCCCCCCceEEEEEEEcCCC
Confidence 344567888889999888754432211 121244444555555665442 135577765554443321
Q ss_pred ceeeeEecCCceEEeCccCCee-EEEEEeecc-ccccCCeeEEEec---CC---ceEEEEEEEEEeeEEEEEEEEcC--C
Q 003526 499 YRNNSVSWAGGSFHFDNLFPGN-FYLRPLLKE-YAFSPPAQAIELG---SG---ESREVIFQATRVAYSATGTITLL--S 568 (813)
Q Consensus 499 ~r~~~~Td~~G~f~f~~L~PG~-Y~v~~~~~e-y~f~P~s~~V~V~---~G---~~~~v~~~~~r~~~sv~G~V~~~--~ 568 (813)
-.........=.+.+.+|.|=+ |.++..... +...+++..|.|. ++ +..++.+.-. . |-+=+|.=. .
T Consensus 564 ~~~~~~~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~-s--StsVrVsW~pP~ 640 (1381)
T KOG4221|consen 564 GKELRVENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEVV-S--STSVRVSWLPPP 640 (1381)
T ss_pred CceEEEecCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEec-C--CCeEEEEccCCC
Confidence 1222344455688888998865 777765432 3444555555543 22 1122322211 0 111222211 1
Q ss_pred CCccC----ccEEEEEeCC-CceeeeeEec-CceeEEEcCCCCCCeEEEEEEeecCCCCcceeccCCceEEEEe--cCcc
Q 003526 569 GQPKD----GVSVEARSES-KGYYEETVTD-TSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKV--GSGD 640 (813)
Q Consensus 569 G~p~~----gv~V~a~~~~-~~~~~~a~TD-~~G~fr~~gL~PG~~Y~V~v~~~~~~~~~~~~~~~p~~~~V~V--~~~d 640 (813)
-+-.. +-.++=.... +....++..+ ..=+|.|.+|.|+..|.|.+.+-.-. .+.|.+..+.. ..+|
T Consensus 641 ~~t~ng~itgYkIRy~~~~~~~~~~~t~v~~n~~~~l~~~Lep~T~Y~vrIsa~t~n------GtGpaS~w~~aeT~~~d 714 (1381)
T KOG4221|consen 641 SETQNGQITGYKIRYRKLSREDEVNETVVKGNTTQYLFNGLEPNTQYRVRISAMTVN------GTGPASEWVSAETPESD 714 (1381)
T ss_pred cccccceEEEEEEEecccCcccccceeecccchhhhHhhcCCCCceEEEEEEEeccC------CCCCcccceeccCcccc
Confidence 11111 1111111111 2234455555 66789999999999999999874211 22344433322 2223
Q ss_pred ccC----ceEEEeecCceEEEEEEEEcc---ccccccccEEEEEEecCCCCceEEEEeeCCCc-eEEeecCCCc-eEEEE
Q 003526 641 IKG----LDFLVFEQPEKTILSGHVEGN---RIKELNSHLLVEIKSASDTSKVESVISLPMSN-FFQVKDLPKG-KHLLQ 711 (813)
Q Consensus 641 v~g----v~f~~~~~~~~~~vsg~V~~s---~~~~~~~~l~v~l~~~~~~~~v~~~~~l~~~~-~F~~~~lp~G-~Y~v~ 711 (813)
..- .--.+-+++.. .+-.+.-. |...+....++-++.+..-.-... +.++... .+.+.+|-++ .|.|+
T Consensus 715 ~~e~vp~~ps~l~~~~g~--~si~vsW~Pp~~~~~~vrgY~ig~r~g~~~p~~~t-Irl~~~~s~y~l~~Le~~~~YvVk 791 (1381)
T KOG4221|consen 715 LDERVPGKPSELHVHPGS--NSIVVSWTPPPHPNIVVRGYKIGYRPGSGIPDTGT-IRLDEKVSYYNLEQLEPNRDYVVK 791 (1381)
T ss_pred ccccCCCCCceeeeccCc--eeEEEEeCCCCChhhhhcceEEeeecccCCCCCcc-EEecceeeEEEEEecccCceEEEE
Confidence 222 11111111111 12222111 111111233344443321111122 4555444 7999999986 79999
Q ss_pred EEe
Q 003526 712 LRS 714 (813)
Q Consensus 712 l~s 714 (813)
|.+
T Consensus 792 L~A 794 (1381)
T KOG4221|consen 792 LRA 794 (1381)
T ss_pred EEE
Confidence 998
No 147
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=45.28 E-value=3.9e+02 Score=28.08 Aligned_cols=86 Identities=15% Similarity=0.228 Sum_probs=48.4
Q ss_pred ccCCeeEEEEEeeccc---ccc----CCeeEEEecCCceEEEEEEEEEeeEEEEEEEEcCC--CCcc-CccEEEEEeC-C
Q 003526 515 NLFPGNFYLRPLLKEY---AFS----PPAQAIELGSGESREVIFQATRVAYSATGTITLLS--GQPK-DGVSVEARSE-S 583 (813)
Q Consensus 515 ~L~PG~Y~v~~~~~ey---~f~----P~s~~V~V~~G~~~~v~~~~~r~~~sv~G~V~~~~--G~p~-~gv~V~a~~~-~ 583 (813)
.|++|.|+|++...+- .|. --++.++|..|+...+.+.-..+...| +|...+ -.-. .+..|.+... +
T Consensus 61 ~L~~G~Ytv~A~~g~~~~~~~d~pyy~G~~~f~I~~g~~t~v~v~C~laN~~V--~v~~~~~f~~~f~~~y~vtV~~~~~ 138 (235)
T PF14900_consen 61 ELPVGSYTVKASYGDNVAAGFDKPYYEGSTTFTIEKGETTTVSVTCKLANAKV--TVNYDDEFKKYFGSDYSVTVSTGAG 138 (235)
T ss_pred eecCCcEEEEEEcCCCccccccCceeecceeEEEecCCcEEEEEEEEeeeeEE--EEEeCHHHHhhhccceEEEEEccCC
Confidence 5789999999985331 111 135689999999988887655443212 222111 1223 4455555544 2
Q ss_pred Cc-ee--eeeEecCceeEEEcC
Q 003526 584 KG-YY--EETVTDTSGSYRLRG 602 (813)
Q Consensus 584 ~~-~~--~~a~TD~~G~fr~~g 602 (813)
+. .. .....+..+.|.+..
T Consensus 139 ~~~~~~~~~~~~~~~~Yf~~~~ 160 (235)
T PF14900_consen 139 GSVTFNKDETTSDRSAYFKAGE 160 (235)
T ss_pred ccEEEeeccCCCCcceEEECCC
Confidence 22 11 233455778888776
No 148
>PRK15223 pilin outer membrane usher protein SafC; Provisional
Probab=44.95 E-value=1.8e+02 Score=36.94 Aligned_cols=96 Identities=17% Similarity=0.224 Sum_probs=61.1
Q ss_pred eeEeCCCccEEeccCCCCceEEEEEeCCC----eeeeecC----C-------cceeeeeeceEEEEEEccCCCCCCcc-c
Q 003526 425 ETSTGADGSFIGGPLYDDITYNVEASKPG----YYLRQVG----P-------NSFSCQKLSQISVRIYSKDDAGEPIP-S 488 (813)
Q Consensus 425 ~t~Td~~G~f~~~~L~~~g~Y~i~A~k~g----y~~~~~~----~-------~~f~~~~l~~I~g~V~d~~~~g~Pl~-G 488 (813)
.+.||..|.=.+..|.|=-.-+|+..... ..+.... | ..|...+.-.+-+++.+++ |+||| |
T Consensus 695 ~~~Td~~G~AvvP~l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~GAiv~~~F~~~~g~~~ll~l~~~~--G~~lP~G 772 (836)
T PRK15223 695 GVKTDFRGDTTVGNLNVYQENTVSLDPSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKRED--GSAIPFG 772 (836)
T ss_pred CCEECCCCeEEeCCCCCceeceEEECCCCCCCCEEecCcEEEEEecCCcEEEEEEEEeeeEEEEEEEECCC--CCcCCCC
Confidence 37999999999988875211134433222 2222110 1 3566666666667888876 99999 9
Q ss_pred eEEEEEcCccceeeeEecCCceEEeCccCCe-eEEEE
Q 003526 489 VLLSLSGDDGYRNNSVSWAGGSFHFDNLFPG-NFYLR 524 (813)
Q Consensus 489 v~vsLsg~~~~r~~~~Td~~G~f~f~~L~PG-~Y~v~ 524 (813)
+.|.+.+.+. .....+.+|..-+.+|+|. ...|+
T Consensus 773 a~v~~~~~g~--~~g~Vg~~G~vyl~g~~~~~~l~v~ 807 (836)
T PRK15223 773 AQVTVNGQDG--SAALVDTDSQVYLTGLADKGELTVK 807 (836)
T ss_pred eEEEecCCCc--eEEEECCCCEEEEEccCCCceEEEE
Confidence 9887643322 3467789999888888864 55554
No 149
>PRK15298 fimbrial outer membrane usher protein StiC; Provisional
Probab=44.62 E-value=1.7e+02 Score=37.21 Aligned_cols=97 Identities=15% Similarity=0.245 Sum_probs=62.0
Q ss_pred eeEeCCCccEEeccCCCCceEEEEEeCCCe----eeeec----CC-------cceeeeeeceEEEEEEccCCCCCCcc-c
Q 003526 425 ETSTGADGSFIGGPLYDDITYNVEASKPGY----YLRQV----GP-------NSFSCQKLSQISVRIYSKDDAGEPIP-S 488 (813)
Q Consensus 425 ~t~Td~~G~f~~~~L~~~g~Y~i~A~k~gy----~~~~~----~~-------~~f~~~~l~~I~g~V~d~~~~g~Pl~-G 488 (813)
.+.||..|.=.+..|.|=-.-+|+....+. .+... .| ..|...+.-.+-.++++++ |+||| |
T Consensus 706 ~~~Td~~G~AvvP~l~pY~~N~i~iD~~~LP~dvei~~t~~~vvPt~GAvv~~~F~~~~g~~~ll~l~~~~--G~~lP~G 783 (848)
T PRK15298 706 GVATDFRGYTVIPNVTPYYRYDISLDSSTFADNVDIPLNNQTVYPTRNAVVRAAYDTHKGYRVLLTLTRSN--GEPVPFG 783 (848)
T ss_pred CCEECCCCeEEeCCCCccceeeEEECCCCCCCCeEecccEEEecccCCeEEEEEEEEEeeEEEEEEEECCC--CCcCCCC
Confidence 379999999999888752222444443322 22211 01 3566666666677888876 99999 9
Q ss_pred eEEEEEcCccceeeeEecCCceEEeCccCCe-eEEEE
Q 003526 489 VLLSLSGDDGYRNNSVSWAGGSFHFDNLFPG-NFYLR 524 (813)
Q Consensus 489 v~vsLsg~~~~r~~~~Td~~G~f~f~~L~PG-~Y~v~ 524 (813)
+.|.+.+.++ ......+.+|..-+.+|++. ...++
T Consensus 784 a~v~~~~~~~-~~~g~Vg~~G~vyl~g~~~~~~l~v~ 819 (848)
T PRK15298 784 ATASVDGQDA-NLASIVGDKGQVFLSGLPEEGLLLVN 819 (848)
T ss_pred cEEEEcCCCC-eeEEEECCCCEEEEEecCCCceEEEE
Confidence 9887744322 22357788999888888865 44444
No 150
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=44.58 E-value=6.9e+02 Score=30.75 Aligned_cols=56 Identities=20% Similarity=0.188 Sum_probs=34.3
Q ss_pred EEEEEEcCCCCccCccEEEEEeC----CC-c--eeeeeE--ecCceeEEE--cC--CCCCCeEEEEEEee
Q 003526 560 ATGTITLLSGQPKDGVSVEARSE----SK-G--YYEETV--TDTSGSYRL--RG--LHPDTTYVIKVVKK 616 (813)
Q Consensus 560 v~G~V~~~~G~p~~gv~V~a~~~----~~-~--~~~~a~--TD~~G~fr~--~g--L~PG~~Y~V~v~~~ 616 (813)
+.=+|+++-|+|++.+.|.+... .. . ...... ...++.|.+ .+ +.+| .|++.+..+
T Consensus 293 l~v~Vt~vlG~~~~~~~v~~~~a~~s~~~~~~vls~~~l~~~~~~~~~~l~~~~~k~~~G-~Y~~~~~~~ 361 (636)
T PF05817_consen 293 LKVRVTNVLGQPLPPLSVKLVSAISSSSDDSVVLSNKPLTFDSDKTVYELDLMSLKPARG-YYKFSFSVS 361 (636)
T ss_pred EEEEEEeccCCcCCcchhhhhhhhhccCCcceeeccccceecCCCCeEEEecccCCCCCc-eEEEEEEec
Confidence 55668899999998777765431 11 1 111112 245566765 33 4689 799999874
No 151
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=44.22 E-value=37 Score=26.99 Aligned_cols=25 Identities=44% Similarity=0.643 Sum_probs=21.2
Q ss_pred ecCceeEEEcCCCCCCeEEEEEEee
Q 003526 592 TDTSGSYRLRGLHPDTTYVIKVVKK 616 (813)
Q Consensus 592 TD~~G~fr~~gL~PG~~Y~V~v~~~ 616 (813)
.+.+-.|.+.+|.||..|.+++.+.
T Consensus 53 ~~~~~~~~i~~L~~~~~Y~v~v~a~ 77 (83)
T smart00060 53 TPSSTSYTLTGLKPGTEYEFRVRAV 77 (83)
T ss_pred cCCccEEEEeCcCCCCEEEEEEEEE
Confidence 3446789999999999999999874
No 152
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=44.12 E-value=62 Score=29.12 Aligned_cols=58 Identities=16% Similarity=0.192 Sum_probs=33.8
Q ss_pred EEEEccCCCCCCccceEEEEEcCccceeeeEecCCceEEeCccCCeeEEEEEeeccccccCCeeE
Q 003526 474 VRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQA 538 (813)
Q Consensus 474 g~V~d~~~~g~Pl~Gv~vsLsg~~~~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~ey~f~P~s~~ 538 (813)
..+.|.+ +.|+.|..|......-. .-+.+=+..+ +|+||+|+|+..+.++.-.|-..+
T Consensus 24 hlliD~~--~~~~~~~~I~~~~n~vh----y~~Gqte~~I-~L~PG~htLtl~~~d~~h~~~~~~ 81 (87)
T PF14347_consen 24 HLLIDGD--GPPLANEPIPFNINGVH----YGKGQTELNI-ELPPGKHTLTLQLGDGDHVPHDPP 81 (87)
T ss_pred EEEECCC--CCcCCCCeeeecCCeEE----eCCCEEEEEE-EeCCCCEEEEEEeCCCCcccCCCc
Confidence 4566665 66777766655432110 0111223345 699999999998877665554443
No 153
>PRK15273 putative fimbrial outer membrane usher protein SteB; Provisional
Probab=43.84 E-value=4.4e+02 Score=33.73 Aligned_cols=106 Identities=15% Similarity=0.111 Sum_probs=73.3
Q ss_pred eEecCCceEEeCccCCeeE---EEEEe--eccccccCCeeEEEecCCceEEEEEEEEEeeEEEEEEEEcCCCCccC-ccE
Q 003526 503 SVSWAGGSFHFDNLFPGNF---YLRPL--LKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 576 (813)
Q Consensus 503 ~~Td~~G~f~f~~L~PG~Y---~v~~~--~~ey~f~P~s~~V~V~~G~~~~v~~~~~r~~~sv~G~V~~~~G~p~~-gv~ 576 (813)
..||..|.-.+..|.|=.. .|.+. ..+..+.-..+.|.-..|...-+.|...+ ...+.=++++.+|.|+| |+.
T Consensus 683 ~~Td~~G~AvvP~L~pY~~N~i~ID~~~LP~dvei~~t~~~vvPt~GAiv~~~F~~~~-g~~~l~~l~~~dG~~lPfGa~ 761 (881)
T PRK15273 683 TSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVS-GEKMMAVFRLADGDFPPFGAE 761 (881)
T ss_pred CeECCCCeEEeCCCCcceeeeEEECCcCCCCCEEeccCEEEEEecCCCEEEEEEEEEe-eeEEEEEEEccCCCcCCCceE
Confidence 5799999999998887443 22221 12344445566777788888778887644 44677788899999986 665
Q ss_pred EEEEeCCCceeeeeEecCceeEEEcCCCCCCeEEEEEEe
Q 003526 577 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVK 615 (813)
Q Consensus 577 V~a~~~~~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~ 615 (813)
|. ..++ ........+|.--|+|+.|+.+ +.|+.
T Consensus 762 V~--~~~g--~~~giVg~~G~vyl~g~~~~~~--l~V~w 794 (881)
T PRK15273 762 VK--NERQ--QQLGLVADDGNAWLAGVKAGET--LKVFW 794 (881)
T ss_pred EE--cCCC--cEEEEEcCCCEEEEecCCCCce--EEEEe
Confidence 54 2222 2457889999999999998754 45554
No 154
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=42.73 E-value=1.3e+02 Score=26.73 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=23.2
Q ss_pred eEEEEEcCcc---ceeee-EecCCceEEeC-----ccCCeeEEEEEeec
Q 003526 489 VLLSLSGDDG---YRNNS-VSWAGGSFHFD-----NLFPGNFYLRPLLK 528 (813)
Q Consensus 489 v~vsLsg~~~---~r~~~-~Td~~G~f~f~-----~L~PG~Y~v~~~~~ 528 (813)
+.|.+.+.++ .+... .++++|.|.+. +...|.|.|++...
T Consensus 38 ~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~ 86 (99)
T PF01835_consen 38 VTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTD 86 (99)
T ss_dssp EEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEET
T ss_pred eEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEc
Confidence 4444554433 23334 56788887774 44589999998763
No 155
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=42.30 E-value=82 Score=28.00 Aligned_cols=47 Identities=15% Similarity=0.177 Sum_probs=32.5
Q ss_pred CCCeEEEEEecCcchhhhcccCceeeeeEeCCCccEEe--c-cCCCCceEEEEEeCCCeee
Q 003526 399 LSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIG--G-PLYDDITYNVEASKPGYYL 456 (813)
Q Consensus 399 l~ga~V~l~~~~~~~~~~~~~~~~~~~t~Td~~G~f~~--~-~L~~~g~Y~i~A~k~gy~~ 456 (813)
.+|+.|.|+..+ +....+.++ +|.+.+ . +|...+.|+|++.+-.|..
T Consensus 25 ~~gs~ValS~dg----------~l~G~ai~~-sG~ati~l~~~it~~~~~tlTit~~n~~t 74 (81)
T PF03785_consen 25 VPGSYVALSQDG----------DLYGKAIVN-SGNATINLTNPITDEGTLTLTITAFNYVT 74 (81)
T ss_dssp STT-EEEEEETT----------EEEEEEE-B-TTEEEEE-SS--TT-SEEEEEEE-TTB--
T ss_pred CCCcEEEEecCC----------EEEEEEEec-CceEEEECCcccCCCceEEEEEEEEccEE
Confidence 578999998764 567899999 999987 3 6777799999999877753
No 156
>PRK15294 putative fimbrial outer membrane usher protein SthC; Provisional
Probab=42.04 E-value=1.5e+02 Score=37.49 Aligned_cols=96 Identities=14% Similarity=0.119 Sum_probs=60.7
Q ss_pred eEeCCCccEEeccCCCCceEEEEEeCCCe----eeeecC----C-------cceeeeeeceEEEEEEccCCCCCCcc-ce
Q 003526 426 TSTGADGSFIGGPLYDDITYNVEASKPGY----YLRQVG----P-------NSFSCQKLSQISVRIYSKDDAGEPIP-SV 489 (813)
Q Consensus 426 t~Td~~G~f~~~~L~~~g~Y~i~A~k~gy----~~~~~~----~-------~~f~~~~l~~I~g~V~d~~~~g~Pl~-Gv 489 (813)
+.||..|.=.+..|.|=..-+|+...... .+.... | ..|...+.-.+-..+.+++ |+||| |+
T Consensus 701 ~~Td~~G~AvvP~l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~GAiv~~~F~~~~g~~~l~~l~~~~--G~~lPfGa 778 (845)
T PRK15294 701 VDTDFRGYAVVPYASPYHRNEVSLDTTGIRKNIELIDTSKTLVPTRGAVVRAEYKTNIGYKALMVLTRIN--NLPVPFGA 778 (845)
T ss_pred CEECCCCeEEeCCCCccccceEEECCCCCCCCeEecccEEEEEecCCcEEEEEEEEeeeeEEEEEEECCC--CCcCCceE
Confidence 69999999999887752222344433222 222110 1 3566666566667888876 99999 99
Q ss_pred EEEEEcCccceeeeEecCCceEEeCccCC-eeEEEE
Q 003526 490 LLSLSGDDGYRNNSVSWAGGSFHFDNLFP-GNFYLR 524 (813)
Q Consensus 490 ~vsLsg~~~~r~~~~Td~~G~f~f~~L~P-G~Y~v~ 524 (813)
.|.+.+.++ ........+|..-+.+|++ |...|+
T Consensus 779 ~V~~~~~~g-~~~g~Vg~~G~vyl~gl~~~~~L~v~ 813 (845)
T PRK15294 779 TVSSLTKPD-NHSSFVGDAGQAWLTGLEKQGRLLVK 813 (845)
T ss_pred EEEccCCCC-ceEEEEcCCCEEEEEcCCCCceEEEE
Confidence 887644322 2345778899988888885 555555
No 157
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=42.01 E-value=46 Score=30.69 Aligned_cols=58 Identities=22% Similarity=0.475 Sum_probs=34.2
Q ss_pred EEEEEEEcCC-CCccCccEEEEEeCCCc-eeeeeEecCce---eEEEcCCCCCCeEEEEEEeec
Q 003526 559 SATGTITLLS-GQPKDGVSVEARSESKG-YYEETVTDTSG---SYRLRGLHPDTTYVIKVVKKD 617 (813)
Q Consensus 559 sv~G~V~~~~-G~p~~gv~V~a~~~~~~-~~~~a~TD~~G---~fr~~gL~PG~~Y~V~v~~~~ 617 (813)
++.|....+. -+++..|+|.+.+..+. ..+...+...+ .+.|.++.+| .|+|++....
T Consensus 33 ~i~~~~l~I~F~~~~~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G-~Y~l~i~~~~ 95 (106)
T PF11589_consen 33 SIDGNNLSIEFESPIGDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSG-EYTLEITNGN 95 (106)
T ss_dssp EEETTEEEEEESS--SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SE-EEEEEEEECT
T ss_pred EEeCCEEEEEEcCCCCCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCc-cEEEEEEeCC
Confidence 3444443332 56788888888875443 44455444444 7888999999 6999998743
No 158
>PF03272 Enhancin: Viral enhancin protein; InterPro: IPR004954 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M60 (enhancin family, clan MA(E)). The active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The viral enhancin protein, or enhancing factor, is involved in disruption of the peritrophic membrane and fusion of nucleocapsids with mid-gut cells.; GO: 0016032 viral reproduction
Probab=40.16 E-value=3.2e+02 Score=34.42 Aligned_cols=74 Identities=16% Similarity=0.190 Sum_probs=53.1
Q ss_pred ceEEEEEEccCCCCCCccceEEEEEcCccceeeeEecCCceEEeCccCCeeEEEEEeec-cccccCCeeEEEecCCc
Q 003526 470 SQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLK-EYAFSPPAQAIELGSGE 545 (813)
Q Consensus 470 ~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~~~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~-ey~f~P~s~~V~V~~G~ 545 (813)
+.+.++..-.+ =..|.|..++|..+.......+-+.+|...|.+|+||-|.|++-.. ...+.+...-+.|+++.
T Consensus 445 ~~~tl~~~idd--~~qi~G~~~~l~dg~~~v~~~~i~~~~~~~~~~v~~GvYtl~~p~G~~~rY~~~~~YlvV~~~~ 519 (775)
T PF03272_consen 445 GNVTLTFNIDD--PSQIYGETYSLYDGNKVVYESTITDSTTQLFNDVPPGVYTLRHPRGRNKRYRPDTNYLVVKETE 519 (775)
T ss_pred ccEEEEEEcCC--hHHhcCceEEEEcCCeeEEEEEEcCCCceeccCCCCeeEEEEccCCCccccccCccEEEEeCCC
Confidence 44445444333 4568899999998766655666777899999999999999996432 45566667778888764
No 159
>PRK15248 fimbrial outer membrane usher protein StbC; Provisional
Probab=39.47 E-value=2e+02 Score=36.49 Aligned_cols=94 Identities=16% Similarity=0.076 Sum_probs=60.2
Q ss_pred eEeCCCccEEeccCCCCceEEEEEeCC----CeeeeecC----C-------cceeeeeeceEEEEEEccCCCCCCcc-ce
Q 003526 426 TSTGADGSFIGGPLYDDITYNVEASKP----GYYLRQVG----P-------NSFSCQKLSQISVRIYSKDDAGEPIP-SV 489 (813)
Q Consensus 426 t~Td~~G~f~~~~L~~~g~Y~i~A~k~----gy~~~~~~----~-------~~f~~~~l~~I~g~V~d~~~~g~Pl~-Gv 489 (813)
..||..|.-.+..|.|=..-+|+.... +..+.... | ..|...+.-.+-+++.+++ |+||| |+
T Consensus 710 ~~Td~~G~avVp~L~pY~~N~i~ID~~~LP~dvel~~t~~~vvP~~GAiv~~~F~~~~g~~~l~~l~~~d--G~~lP~Ga 787 (853)
T PRK15248 710 AVVDRFGYAILPSLSPYRVNNVTLDTRKMRSDAELTGGSQQIVPYAGAIARVNFATISGKAVLISVKMPD--GGIPPMGA 787 (853)
T ss_pred CeECCCCeEEeCCCCCceeeeEEECCcCCCCCEEEcccEEeecccCCcEEEEEEEEeeceEEEEEEEcCC--CCcCCCce
Confidence 579999999998887522224444322 22222211 1 3566666667778888876 99999 88
Q ss_pred EEEEEcCccceeeeEecCCceEEeCccCCe-eEEEE
Q 003526 490 LLSLSGDDGYRNNSVSWAGGSFHFDNLFPG-NFYLR 524 (813)
Q Consensus 490 ~vsLsg~~~~r~~~~Td~~G~f~f~~L~PG-~Y~v~ 524 (813)
.|...++ .....-..+|..-+.++++. ...|+
T Consensus 788 ~V~~~~g---~~~g~Vg~~G~vyl~~~~~~~~l~V~ 820 (853)
T PRK15248 788 DVFNGEG---TNIGMVGQSGQIYARIAHPSGSLLVR 820 (853)
T ss_pred EEECCCC---cEEEEEcCCCEEEEEcCCCCceEEEE
Confidence 8863322 23356788999888888764 44454
No 160
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=39.35 E-value=99 Score=29.46 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=41.7
Q ss_pred eEEEEEEccCCCCCCccceEEEEEc--Ccc-------ceeeeEecCCceEEeCccCCeeEEEEEeec
Q 003526 471 QISVRIYSKDDAGEPIPSVLLSLSG--DDG-------YRNNSVSWAGGSFHFDNLFPGNFYLRPLLK 528 (813)
Q Consensus 471 ~I~g~V~d~~~~g~Pl~Gv~vsLsg--~~~-------~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~ 528 (813)
.+...|.+.+ |+|+.|+.+.|-. ++. -..-..||.+|.+.-.+..-|.|.+-.-..
T Consensus 43 pVT~hVen~e--~~pi~~~ev~lmKa~ds~~qPs~eig~~IGKTD~~Gki~Wk~~~kG~Y~v~l~n~ 107 (131)
T PF10794_consen 43 PVTFHVENAE--GQPIKDFEVTLMKAADSDPQPSKEIGISIGKTDEEGKIIWKNGRKGKYIVFLPNG 107 (131)
T ss_pred cEEEEEecCC--CCcccceEEEEEeccccCCCCchhhceeecccCCCCcEEEecCCcceEEEEEcCC
Confidence 4566788876 9999999999864 211 012356999999999999999998764433
No 161
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=38.76 E-value=94 Score=32.93 Aligned_cols=55 Identities=9% Similarity=0.051 Sum_probs=35.6
Q ss_pred EEEEEEEeccCCCCceEEEEEEcCcccccCcceeeEEEecCCceEEEee-------cCCccEEEEEEe
Q 003526 106 NVLGNVACKERCGPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRD-------VLPGKYRLEVKR 166 (813)
Q Consensus 106 sv~G~V~c~~~c~~~v~VtL~~~~~~~~~~~~~~~~~~t~~~g~f~F~~-------VlPG~Y~v~v~~ 166 (813)
.+.+.+..-..+. .++|++.+..+. ..+...+....+.|.+.. +.+|.|+++|..
T Consensus 112 ~~~~~~~l~~~a~-~v~v~I~D~~G~-----vV~t~~~~~G~~~f~WDG~d~~G~~l~~G~Yt~~V~A 173 (223)
T PRK12813 112 PVTISPNPAADAD-KAELVVRDAAGA-----EVARETVPVGAGPVEWAGEDADGNPLPNGAYSFVVES 173 (223)
T ss_pred eeEEEEeccCCCc-eEEEEEEcCCCC-----EEEEEeeCCCceeEEeCCcCCCCCcCCCccEEEEEEE
Confidence 4555555544455 688888887765 233344433345677763 889999999974
No 162
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=37.95 E-value=84 Score=33.30 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=33.7
Q ss_pred EEEEEEEeccCCCCceEEEEEEcCcccccCcceeeEEE-ecCCceEEE---------eecCCccEEEEEE
Q 003526 106 NVLGNVACKERCGPLVTVTLMRLGQKHYDGTEKKTVSL-TDDSDQFLF---------RDVLPGKYRLEVK 165 (813)
Q Consensus 106 sv~G~V~c~~~c~~~v~VtL~~~~~~~~~~~~~~~~~~-t~~~g~f~F---------~~VlPG~Y~v~v~ 165 (813)
.+.+.+..-.... .++|++.+..+. ..+...+ ....|.+.| ..+.||.|+++|.
T Consensus 114 ~~~~~~~l~~~a~-~vti~I~D~~G~-----~Vrt~~lg~~~aG~~~f~WDG~d~~G~~lp~G~Yt~~V~ 177 (225)
T PRK06655 114 TTPFGVELPSAAD-NVTVTITDSAGQ-----VVRTIDLGAQSAGVVSFTWDGTDTDGNALPDGNYTIKAS 177 (225)
T ss_pred ceEEEEEcCCCCc-EEEEEEEcCCCC-----EEEEEecCCcCCCceeEEECCCCCCCCcCCCeeEEEEEE
Confidence 3455554433444 688888877654 2333444 244566666 3488999999996
No 163
>PF09116 gp45-slide_C: gp45 sliding clamp, C terminal; InterPro: IPR015200 This domain is essential for the interaction of the gp45 sliding clamp with the corresponding polymerase. It adopts a DNA clamp fold, consisting of two alpha helices and two beta sheets - the fold is duplicated and has internal pseudo two-fold symmetry []. ; PDB: 1B8H_A 1B77_B 3U61_F 3U60_G 3U5Z_R 1CZD_B.
Probab=37.46 E-value=85 Score=29.69 Aligned_cols=42 Identities=24% Similarity=0.473 Sum_probs=22.1
Q ss_pred ceEEEEEe----cCCCcccceeeeeCCCCc--EEEEe-------cCcceEEEEee
Q 003526 30 NKVKVALT----HGPDKVKPQVKQTDNNGN--FCFEV-------PPGEYRLSAMA 71 (813)
Q Consensus 30 ~~~~v~lt----~g~~~~k~~t~~t~~~G~--Fcf~l-------~pG~Y~l~v~~ 71 (813)
+++-|+.+ ....+..+..+..+.+|. |||-+ .||+|.|++..
T Consensus 33 gkivv~~~~~~~~~~tsn~ysv~vge~~~~~~F~f~~k~eNmk~~~gdY~V~is~ 87 (112)
T PF09116_consen 33 GKIVVTDFNKDDKNDTSNSYSVEVGEYDGDNNFCFCFKMENMKMLPGDYKVKISK 87 (112)
T ss_dssp TEEEEEEE-TTSTTS-S-SEEEEEEE--SS--EEEEEEGGG----SS-EEEEEEE
T ss_pred CEEEEEccccccccCCCCceEEEEeccCCCccEEEEEEeceeEeecCCeEEEEEh
Confidence 35556662 122222344555566665 88743 39999999987
No 164
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=37.19 E-value=1.7e+02 Score=30.72 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=26.1
Q ss_pred eEEEEEecCCCcccceeeeeCCC-CcEEEEecCcceEEEEeecCCCCCCc
Q 003526 31 KVKVALTHGPDKVKPQVKQTDNN-GNFCFEVPPGEYRLSAMAATPESSSG 79 (813)
Q Consensus 31 ~~~v~lt~g~~~~k~~t~~t~~~-G~Fcf~l~pG~Y~l~v~~~~~e~~~G 79 (813)
...|.+.+....++...+..+-. +.+ .||+|.|+|++... .....|
T Consensus 34 ~~~v~I~~~~~~~~~~~~~~~~~~~~i--~L~~G~Ytv~A~~g-~~~~~~ 80 (235)
T PF14900_consen 34 DFTVEIYNADGTVVKYWKYSEMPGESI--ELPVGSYTVKASYG-DNVAAG 80 (235)
T ss_pred ceEEEEEeCCCcEEEecchhccccceE--eecCCcEEEEEEcC-CCcccc
Confidence 45566643222233333344444 445 89999999999954 333444
No 165
>PF13953 PapC_C: PapC C-terminal domain; PDB: 3L48_E 2XET_A 3RFZ_E 2KT6_A.
Probab=36.66 E-value=57 Score=27.61 Aligned_cols=45 Identities=22% Similarity=0.423 Sum_probs=26.8
Q ss_pred EEEccCCCCCCcc-ceEEEEEcCccceeeeEecCCceEEeCccCC-eeEEEE
Q 003526 475 RIYSKDDAGEPIP-SVLLSLSGDDGYRNNSVSWAGGSFHFDNLFP-GNFYLR 524 (813)
Q Consensus 475 ~V~d~~~~g~Pl~-Gv~vsLsg~~~~r~~~~Td~~G~f~f~~L~P-G~Y~v~ 524 (813)
++.+.+ |+||| |+.|....+ ......+.+|+.-+.++++ |...|+
T Consensus 2 ~l~~~~--G~~lPfGA~v~~~~g---~~~g~Vg~~G~vyl~~~~~~~~L~V~ 48 (68)
T PF13953_consen 2 TLRDAD--GKPLPFGASVSDEDG---NNIGIVGQDGQVYLSGLPPKGTLTVK 48 (68)
T ss_dssp EEEETT--SEE--TT-EEEETTS---SEEEEB-GCGEEEEEEE-TCEEEEEE
T ss_pred EEEcCC--CCcCCCCcEEEcCCC---CEEEEEcCCCEEEEECCCCCcEEEEE
Confidence 566665 99999 999986443 2445678889888887773 344444
No 166
>PRK15284 putative fimbrial outer membrane usher protein StfC; Provisional
Probab=36.31 E-value=2.5e+02 Score=35.88 Aligned_cols=94 Identities=12% Similarity=0.102 Sum_probs=57.8
Q ss_pred eEeCCCccEEeccCCCCceEEEEEeCCCe----eeeec--------CC---cceeeeeeceEEEEEEccCCCCCCcc-ce
Q 003526 426 TSTGADGSFIGGPLYDDITYNVEASKPGY----YLRQV--------GP---NSFSCQKLSQISVRIYSKDDAGEPIP-SV 489 (813)
Q Consensus 426 t~Td~~G~f~~~~L~~~g~Y~i~A~k~gy----~~~~~--------~~---~~f~~~~l~~I~g~V~d~~~~g~Pl~-Gv 489 (813)
+.||..|.=.+..|.|=..-+|+....+. .+... +. ..|...+.-.+-..+++++ |+||| |+
T Consensus 706 v~Td~~G~AvVp~l~pY~~N~i~ID~~~LP~dvel~~t~~~vvPt~GAiv~~~F~~~~g~~~l~~l~~~d--G~~lPfGa 783 (881)
T PRK15284 706 VYTNMFGKAVVADVNNYYRNQAYIDLNNLPEDAEATQSVVQATLTEGAIGYRKFAVISGQKAMAVLRLRD--GSHPPFGA 783 (881)
T ss_pred ceECCCCeEEeCCCCcceeeeEEECCcCCCCCEEEccCEEEEEEcCCcEEEEEEEEeeeeEEEEEEEcCC--CCcCCCce
Confidence 58999999999888752222344433222 22211 01 2455555555566788876 99999 88
Q ss_pred EEEEEcCccceeeeEecCCceEEeCccCCe-eEEEE
Q 003526 490 LLSLSGDDGYRNNSVSWAGGSFHFDNLFPG-NFYLR 524 (813)
Q Consensus 490 ~vsLsg~~~~r~~~~Td~~G~f~f~~L~PG-~Y~v~ 524 (813)
.|....+ ......+.+|..-+.+|+|. ...|+
T Consensus 784 ~V~~~~g---~~~giVg~~G~vyL~gl~~~~~l~V~ 816 (881)
T PRK15284 784 EVKNDNQ---QQVGLVDDDGNVYLAGVKPGEHMQVF 816 (881)
T ss_pred EEEcCCC---ceEEEEcCCCEEEEEccCCCceEEEE
Confidence 8863332 23457788999888888864 44444
No 167
>PF13115 YtkA: YtkA-like
Probab=35.37 E-value=1.7e+02 Score=25.40 Aligned_cols=20 Identities=20% Similarity=0.492 Sum_probs=14.1
Q ss_pred EEEEEEccCCCCCCccceEEEEE
Q 003526 472 ISVRIYSKDDAGEPIPSVLLSLS 494 (813)
Q Consensus 472 I~g~V~d~~~~g~Pl~Gv~vsLs 494 (813)
|.+. .+. +|+|+.++.|.+.
T Consensus 24 i~v~-~~~--~g~pv~~a~V~~~ 43 (86)
T PF13115_consen 24 ITVT-VDQ--GGKPVTDADVQFE 43 (86)
T ss_pred EEEE-ECC--CCCCCCCCEEEEE
Confidence 4445 444 3999999888875
No 168
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=35.24 E-value=1.2e+02 Score=24.42 Aligned_cols=33 Identities=33% Similarity=0.557 Sum_probs=24.2
Q ss_pred eeEecCceeEEE--cCCCCCCeEEEEEEeecCCCCc
Q 003526 589 ETVTDTSGSYRL--RGLHPDTTYVIKVVKKDGFGST 622 (813)
Q Consensus 589 ~a~TD~~G~fr~--~gL~PG~~Y~V~v~~~~~~~~~ 622 (813)
.++.|++|.|.+ ..+..| .|.+++.+.|..||.
T Consensus 5 ~~t~~~~G~Ws~t~~~~~dG-~y~itv~a~D~AGN~ 39 (54)
T PF13754_consen 5 TTTVDSDGNWSFTVPALADG-TYTITVTATDAAGNT 39 (54)
T ss_pred EEEECCCCcEEEeCCCCCCc-cEEEEEEEEeCCCCC
Confidence 456688898887 455678 599999887655655
No 169
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=35.11 E-value=2.2e+02 Score=25.28 Aligned_cols=47 Identities=23% Similarity=0.399 Sum_probs=28.9
Q ss_pred eccCCCCceEEEEEEcCcccccCcceeeEEEecC-CceE--EEeecCCccEEEEEE
Q 003526 113 CKERCGPLVTVTLMRLGQKHYDGTEKKTVSLTDD-SDQF--LFRDVLPGKYRLEVK 165 (813)
Q Consensus 113 c~~~c~~~v~VtL~~~~~~~~~~~~~~~~~~t~~-~g~f--~F~~VlPG~Y~v~v~ 165 (813)
+.+.+...+.|.|...++. .....+++. +|+| .|..-.+|.|+|.+.
T Consensus 26 ~~d~G~~~~~v~i~~p~g~------~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~ 75 (93)
T smart00557 26 TRGAGGGELEVEVTGPSGK------KVPVEVKDNGDGTYTVSYTPTEPGDYTVTVK 75 (93)
T ss_pred cCCCCCCcEEEEEECCCCC------eeEeEEEeCCCCEEEEEEEeCCCEeEEEEEE
Confidence 3333444677777765543 344455543 4666 466677888999887
No 170
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=34.32 E-value=2e+02 Score=35.81 Aligned_cols=59 Identities=10% Similarity=0.245 Sum_probs=44.2
Q ss_pred EEEEEEccCCCCCCccceEEEEEcCccceeeeEecCCceEEeC-ccCCeeE-EEEEeecccc
Q 003526 472 ISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFD-NLFPGNF-YLRPLLKEYA 531 (813)
Q Consensus 472 I~g~V~d~~~~g~Pl~Gv~vsLsg~~~~r~~~~Td~~G~f~f~-~L~PG~Y-~v~~~~~ey~ 531 (813)
|.+.|.|.. +-+||++|.|.+.++.......+|+.||...+. .-.+|.. .|.+.+.+|.
T Consensus 3 lKV~V~d~~-t~qpl~~A~V~V~~N~t~~~s~~t~~dG~~~l~~~yrlg~~l~v~a~k~gyv 63 (807)
T PF10577_consen 3 LKVQVSDAS-TRQPLSDASVEVFGNQTLTASGTTGNDGVVLLKFPYRLGTWLIVTASKDGYV 63 (807)
T ss_pred EEEEEeccc-CcccCCCCeEEEEeceeEeecceecCCceEEEEEeccCCCeEEEEEecCCcc
Confidence 678898884 589999999999988655667899999976662 2245664 4667777775
No 171
>COG3188 FimD P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=34.28 E-value=5.4e+02 Score=32.72 Aligned_cols=93 Identities=17% Similarity=0.169 Sum_probs=61.4
Q ss_pred eeEeCCCccEEeccCCCCceEEEEEeCCCee----eeecC----C-------cceeeeeeceEEEEEEccCCCCCCcc-c
Q 003526 425 ETSTGADGSFIGGPLYDDITYNVEASKPGYY----LRQVG----P-------NSFSCQKLSQISVRIYSKDDAGEPIP-S 488 (813)
Q Consensus 425 ~t~Td~~G~f~~~~L~~~g~Y~i~A~k~gy~----~~~~~----~-------~~f~~~~l~~I~g~V~d~~~~g~Pl~-G 488 (813)
.+.||..|.=.+..|.|=-.-+|.....+.- +.... | ..|.......+-+++++.+ |+||| |
T Consensus 693 ~~~Td~~G~avvP~lspY~~n~v~lD~~~Lp~dvel~~~~~~v~Pt~GAvv~~~F~t~~g~~~li~l~~~d--G~~lPfG 770 (835)
T COG3188 693 GVRTDRRGYAVVPYLTPYRENRVSLDPNNLPDDVELENTVQNVVPTEGAVVLADFDTRIGYRALITLRRAD--GSPLPFG 770 (835)
T ss_pred CcEEcCCCcEeccCcccceeceEEEccccCCCceEecccEEEEEEcCCeEEEEEEeeeceeEEEEEEECCC--CCcCCCc
Confidence 5799999988877776511113444333222 11110 1 3566665556667888876 99999 9
Q ss_pred eEEEEEcCccceeeeEecCCceEEeCccCCeeE
Q 003526 489 VLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNF 521 (813)
Q Consensus 489 v~vsLsg~~~~r~~~~Td~~G~f~f~~L~PG~Y 521 (813)
+.|...++.. .....+.+|++-+.+|+++..
T Consensus 771 a~v~~~~~~~--~~g~Vg~~G~vyl~gl~~~~~ 801 (835)
T COG3188 771 AEVTDEGGGQ--NVGIVGDDGQVYLRGLPPKGR 801 (835)
T ss_pred eEEEECCCce--EEEEEecCCeEEEecCCCCCe
Confidence 9999887643 345778999999999998774
No 172
>KOG4802 consensus Adhesion-type protein [Extracellular structures]
Probab=34.21 E-value=1.9e+02 Score=33.22 Aligned_cols=115 Identities=16% Similarity=0.266 Sum_probs=61.3
Q ss_pred ecCCceEEeCccCCeeEE-EEEeec-c---ccccCCeeEEEecCC-----ceEEEEEEEEEeeEEEEEEEEcC---CCCc
Q 003526 505 SWAGGSFHFDNLFPGNFY-LRPLLK-E---YAFSPPAQAIELGSG-----ESREVIFQATRVAYSATGTITLL---SGQP 571 (813)
Q Consensus 505 Td~~G~f~f~~L~PG~Y~-v~~~~~-e---y~f~P~s~~V~V~~G-----~~~~v~~~~~r~~~sv~G~V~~~---~G~p 571 (813)
|.+.-.+.|..+.||.+| ++.-.. - ..|+-++.+.-.... ...++.+-+....++..=.|... ..-|
T Consensus 205 t~~e~~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~w~P~~sdlP 284 (516)
T KOG4802|consen 205 TMEENTYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVVWCPSKSDLP 284 (516)
T ss_pred cCCCceeeeeecCcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEEeCCCCCCCc
Confidence 344448999999999954 554322 1 234444443332211 12244443322223333444433 3556
Q ss_pred cCccEEEEEeCC---C-c-e---eeeeEecCceeEEEcCCCCCCeEEEEEEeecCCCCc
Q 003526 572 KDGVSVEARSES---K-G-Y---YEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGST 622 (813)
Q Consensus 572 ~~gv~V~a~~~~---~-~-~---~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~~~~~~~~ 622 (813)
+..-.|.-..-. . . . .-+-+|+ +|.|.+|+|.+.|.|++.+-.+||+.
T Consensus 285 v~~Yki~Ws~~v~s~k~~m~tks~~~k~th---q~si~~L~Pns~Y~VevqAi~y~g~~ 340 (516)
T KOG4802|consen 285 VEKYKITWSLYVNSAKASMITKSSYVKDTH---QFSIKELLPNSSYYVEVQAISYLGSR 340 (516)
T ss_pred ceeeEEEeehhhhhhhhhcccccceeeccc---hhhhhhcCCCCeEEEEEEEEEeccCc
Confidence 666665522110 0 0 1 1122344 67799999999999999987777543
No 173
>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes. These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.
Probab=34.04 E-value=1.5e+02 Score=31.29 Aligned_cols=89 Identities=19% Similarity=0.290 Sum_probs=52.4
Q ss_pred EEeEEEEEEEe--ccC-----CCCceEEEEEEcCcccccCcceeeEEEecCCceEEEeecCCccEEEEEEeeccccccCC
Q 003526 103 ALVNVLGNVAC--KER-----CGPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKRTSREASSME 175 (813)
Q Consensus 103 ~~~sv~G~V~c--~~~-----c~~~v~VtL~~~~~~~~~~~~~~~~~~t~~~g~f~F~~VlPG~Y~v~v~~~~~~~~~~~ 175 (813)
-.++++|+|.. .|. -+ |+.+.|...+=.. -..+... ...+|.|.=..+..|+|+|.... .+
T Consensus 20 P~s~l~G~iiD~~tgE~i~~~~~-gv~i~l~e~gy~~---~~~~~~~-v~qDGtf~n~~lF~G~Yki~~~~-------G~ 87 (222)
T PF12866_consen 20 PDSTLTGRIIDVYTGEPIQTDIG-GVRIQLYELGYGD---NTPQDVY-VKQDGTFRNTKLFDGDYKIVPKN-------GN 87 (222)
T ss_dssp --EEEEEEEEECCTTEE----ST-SSEEEEECS-CCG-----SEEEE-B-TTSEEEEEEE-SEEEEEEE-C-------TS
T ss_pred CCceEEEEEEEeecCCeeeecCC-ceEEEEEeccccc---CCCcceE-EccCCceeeeeEeccceEEEEcC-------CC
Confidence 35689999944 331 34 7899998766321 1222222 25689997799999999999962 13
Q ss_pred CCeEEEeeEEEEEeecCcccceeEEEeceE
Q 003526 176 DNWCWEQSFIGVDVGTNDVKGVEFVQKGYW 205 (813)
Q Consensus 176 ~~wcw~~~~~~V~V~~~~~~~~~f~q~Gy~ 205 (813)
--|-|...++.|+|. ++ ...+|...=|-
T Consensus 88 fp~~~~~dti~v~i~-G~-t~~d~eVtPY~ 115 (222)
T PF12866_consen 88 FPWVVPVDTIEVDIK-GN-TTQDFEVTPYL 115 (222)
T ss_dssp CSBSCCE--EEEEES-SC-EEEEEEE-BSE
T ss_pred CcccCCCccEEEEec-Cc-eEEeEEeeeeE
Confidence 347788888888887 33 45566666553
No 174
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=33.92 E-value=1.4e+02 Score=32.29 Aligned_cols=46 Identities=20% Similarity=0.261 Sum_probs=30.3
Q ss_pred cCccEEEEEeC-CCceeeeeEecCc-eeEE-Ec--CCCCCCeEEEEEEeec
Q 003526 572 KDGVSVEARSE-SKGYYEETVTDTS-GSYR-LR--GLHPDTTYVIKVVKKD 617 (813)
Q Consensus 572 ~~gv~V~a~~~-~~~~~~~a~TD~~-G~fr-~~--gL~PG~~Y~V~v~~~~ 617 (813)
+.+|+|.+... .+........+.. |.|. .. -+.+|..|+|++..++
T Consensus 60 v~~A~V~i~~~~~~~~~~~~~~~~~~g~Y~~~~~~~~~~G~~Y~L~V~~~~ 110 (298)
T PF14054_consen 60 VSGATVTIYEDGQGNEYLFEESSNNDGVYYSSNSFRGRPGRTYRLEVETPG 110 (298)
T ss_pred cCCcEEEEEeCCCcceEeecccCCCcceEEecccccccCCCEEEEEEEECC
Confidence 99999999443 3333333333333 7777 43 3569999999999864
No 175
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=32.47 E-value=2.7e+02 Score=24.18 Aligned_cols=42 Identities=29% Similarity=0.404 Sum_probs=21.8
Q ss_pred ceEEEEEEcCcccccCcceeeEEEe-cCCc--eEEEe-------ecCCccEEEEEEe
Q 003526 120 LVTVTLMRLGQKHYDGTEKKTVSLT-DDSD--QFLFR-------DVLPGKYRLEVKR 166 (813)
Q Consensus 120 ~v~VtL~~~~~~~~~~~~~~~~~~t-~~~g--~f~F~-------~VlPG~Y~v~v~~ 166 (813)
.++|++....+. .+....+. ...| .|... .+.+|.|.+++..
T Consensus 26 ~v~v~I~d~~G~-----~V~t~~~~~~~~G~~~~~WdG~d~~G~~~~~G~Y~~~v~a 77 (81)
T PF13860_consen 26 NVTVTIYDSNGQ-----VVRTISLGSQSAGEHSFTWDGKDDDGNPVPDGTYTFRVTA 77 (81)
T ss_dssp EEEEEEEETTS------EEEEEEEEECSSEEEEEEE-SB-TTS-B--SEEEEEEEEE
T ss_pred EEEEEEEcCCCC-----EEEEEEcCCcCCceEEEEECCCCCCcCCCCCCCEEEEEEE
Confidence 466666666554 22333332 2334 33433 7999999999973
No 176
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=31.73 E-value=1.2e+03 Score=29.69 Aligned_cols=115 Identities=12% Similarity=0.119 Sum_probs=55.2
Q ss_pred eeEEEcCCCCCCeEEEEEEeecCCCCcceeccCCce--EEEEecCccccCceEEEeecC--ceEEEEEEEEccccc-ccc
Q 003526 596 GSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPES--VTVKVGSGDIKGLDFLVFEQP--EKTILSGHVEGNRIK-ELN 670 (813)
Q Consensus 596 G~fr~~gL~PG~~Y~V~v~~~~~~~~~~~~~~~p~~--~~V~V~~~dv~gv~f~~~~~~--~~~~vsg~V~~s~~~-~~~ 670 (813)
-.-.+.||+|-..|+..+.+-.+- .+....-+.. +.|..+.++..-+-. +|+. ....|+-.=.-+..+ ...
T Consensus 398 ~~V~v~~L~ah~~YTFeV~AvNgV--S~lsp~~~~~a~vnItt~qa~ps~V~~--~r~~~~~~~sitlsW~~p~~png~i 473 (996)
T KOG0196|consen 398 TSVTVSDLLAHTNYTFEVEAVNGV--SDLSPFPRQFASVNITTNQAAPSPVSV--LRQVSRTSDSITLSWSEPDQPNGVI 473 (996)
T ss_pred ceEEEeccccccccEEEEEEeecc--cccCCCCCcceeEEeeccccCCCccce--EEEeeeccCceEEecCCCCCCCCcc
Confidence 355788999999999999886542 1111111233 444444444433321 1221 111121111111100 111
Q ss_pred ccEEEEEEecCCCCceEEEEeeCCCceEEeecCCCc-eEEEEEEee
Q 003526 671 SHLLVEIKSASDTSKVESVISLPMSNFFQVKDLPKG-KHLLQLRSS 715 (813)
Q Consensus 671 ~~l~v~l~~~~~~~~v~~~~~l~~~~~F~~~~lp~G-~Y~v~l~s~ 715 (813)
-.-.|+++..+.+..-.+ ....+...-.+.+|.+| .|.++++.-
T Consensus 474 ldYEvky~ek~~~e~~~~-~~~t~~~~~ti~gL~p~t~YvfqVRar 518 (996)
T KOG0196|consen 474 LDYEVKYYEKDEDERSYS-TLKTKTTTATITGLKPGTVYVFQVRAR 518 (996)
T ss_pred eeEEEEEeecccccccee-EEecccceEEeeccCCCcEEEEEEEEe
Confidence 122344444333333333 22233457888899997 799999863
No 177
>PRK15273 putative fimbrial outer membrane usher protein SteB; Provisional
Probab=31.73 E-value=3.2e+02 Score=34.94 Aligned_cols=94 Identities=11% Similarity=0.000 Sum_probs=57.9
Q ss_pred eEeCCCccEEeccCCCCceEEEEEeCCCe----eeeecC----C-------cceeeeeeceEEEEEEccCCCCCCcc-ce
Q 003526 426 TSTGADGSFIGGPLYDDITYNVEASKPGY----YLRQVG----P-------NSFSCQKLSQISVRIYSKDDAGEPIP-SV 489 (813)
Q Consensus 426 t~Td~~G~f~~~~L~~~g~Y~i~A~k~gy----~~~~~~----~-------~~f~~~~l~~I~g~V~d~~~~g~Pl~-Gv 489 (813)
+.||..|.=.+..|.|=-.-+|.....+. .+.... | ..|...+.-.+-.++.+++ |+||| |+
T Consensus 683 ~~Td~~G~AvvP~L~pY~~N~i~ID~~~LP~dvei~~t~~~vvPt~GAiv~~~F~~~~g~~~l~~l~~~d--G~~lPfGa 760 (881)
T PRK15273 683 TSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLAD--GDFPPFGA 760 (881)
T ss_pred CeECCCCeEEeCCCCcceeeeEEECCcCCCCCEEeccCEEEEEecCCCEEEEEEEEEeeeEEEEEEEccC--CCcCCCce
Confidence 69999999999888751111333332222 222110 1 2455555556667888876 99999 99
Q ss_pred EEEEEcCccceeeeEecCCceEEeCccCCe-eEEEE
Q 003526 490 LLSLSGDDGYRNNSVSWAGGSFHFDNLFPG-NFYLR 524 (813)
Q Consensus 490 ~vsLsg~~~~r~~~~Td~~G~f~f~~L~PG-~Y~v~ 524 (813)
.|....+ ......+.+|..-+.+++++ ...|+
T Consensus 761 ~V~~~~g---~~~giVg~~G~vyl~g~~~~~~l~V~ 793 (881)
T PRK15273 761 EVKNERQ---QQLGLVADDGNAWLAGVKAGETLKVF 793 (881)
T ss_pred EEEcCCC---cEEEEEcCCCEEEEecCCCCceEEEE
Confidence 8863322 23456788999888888865 44443
No 178
>PRK09828 putative fimbrial outer membrane usher protein; Provisional
Probab=31.69 E-value=8.4e+02 Score=31.11 Aligned_cols=106 Identities=17% Similarity=0.035 Sum_probs=73.2
Q ss_pred eEecCCceEEeCccCCeeE---EEEEe--eccccccCCeeEEEecCCceEEEEEEEEEeeEEEEEEEEcCCCCccC-ccE
Q 003526 503 SVSWAGGSFHFDNLFPGNF---YLRPL--LKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 576 (813)
Q Consensus 503 ~~Td~~G~f~f~~L~PG~Y---~v~~~--~~ey~f~P~s~~V~V~~G~~~~v~~~~~r~~~sv~G~V~~~~G~p~~-gv~ 576 (813)
..||..|.-.+..|.|=.. .|.+. ..+..+.-..+.|.-..|....+.|...+ ...+.=++++.+|+|+| |+.
T Consensus 718 ~~Td~~G~avVP~l~pY~~N~i~ID~~~LP~dvel~~t~~~vvPt~GAvv~~~F~~~~-g~~~ll~l~~~~G~~lP~Ga~ 796 (865)
T PRK09828 718 STIDRWGYGVTSALSPYRENRVALDINTLENDVELKSTSAVAVPRQGAVVLADFETDQ-GRSAIMNITRSDGKNIPFAAD 796 (865)
T ss_pred ceeCCCCeEEeCCCCCceeeeEEECCcCCCCCeEecccEEEEEecCCcEEEEEEEeec-ceEEEEEEECCCCCcCCCceE
Confidence 4789999999999987553 22221 12344445566677778888888887654 34677788999999986 555
Q ss_pred EEEEeCCCceeeeeEecCceeEEEcCCCCCCeEEEEE
Q 003526 577 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 613 (813)
Q Consensus 577 V~a~~~~~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v 613 (813)
|. ..++ ........+|.--|+||.+....+|+.
T Consensus 797 V~--~~~g--~~~g~Vg~~G~vyl~gl~~~~~l~v~w 829 (865)
T PRK09828 797 VY--DEQG--NVIGNVGQGGQAFVRGIEDQGELRIRW 829 (865)
T ss_pred EE--CCCC--cEEEEEeCCCEEEEEcCCCCceEEEEE
Confidence 54 2222 244788999999999999876444433
No 179
>PRK15255 fimbrial outer membrane usher protein StdB; Provisional
Probab=30.55 E-value=9e+02 Score=30.70 Aligned_cols=108 Identities=16% Similarity=0.062 Sum_probs=71.0
Q ss_pred EecCCceEEeCccCCeeEE---EEEe--eccccccCCeeEEEecCCceEEEEEEEEEeeEEEEEEEEcCCCCccC-ccEE
Q 003526 504 VSWAGGSFHFDNLFPGNFY---LRPL--LKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVSV 577 (813)
Q Consensus 504 ~Td~~G~f~f~~L~PG~Y~---v~~~--~~ey~f~P~s~~V~V~~G~~~~v~~~~~r~~~sv~G~V~~~~G~p~~-gv~V 577 (813)
.||..|...+..|.|=+.. |.+. ..+..+.-..+.|.-..|.+..+.|...+. ..+--+|++.+|+|+| |+.|
T Consensus 690 ~Td~~G~avvP~l~pY~~N~i~ID~~~LP~dvei~~t~~~VvP~~GAvv~~~F~~~~g-~~~l~~l~~~~G~~lP~Ga~V 768 (829)
T PRK15255 690 VTNRFGVGVVSAGSSYRRSDISVDVAALPEDVDVSSSVISQVLTEGAVGYRKIDASQG-EQVLGHIRLADGASPPFGALV 768 (829)
T ss_pred ccCCCCEEEeCCCCCceeeeEEECCcCCCCCEEecccEEEEEecCCCEEEEEEEEecc-eEEEEEEEcCCCCcCCCcEEE
Confidence 5999999999988874432 2222 123344445666777788787787776543 3566688999999986 5655
Q ss_pred EEEeCCCceeeeeEecCceeEEEcCCCCCCeEEEEEEe
Q 003526 578 EARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVK 615 (813)
Q Consensus 578 ~a~~~~~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~ 615 (813)
. ..+++ ........+|.--|+||.|...=++.++.
T Consensus 769 ~-~~~~g--~~~g~Vg~~G~vyl~gl~~~~~~~l~v~w 803 (829)
T PRK15255 769 V-SGKTG--RTAGMVGDDGLAYLTGLSGEDRRTLNVSW 803 (829)
T ss_pred E-cCCCC--ceeEEEcCCCEEEEECCCCCCCeeEEEEE
Confidence 4 22212 24478899999999999753222455654
No 180
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=30.47 E-value=2.9e+02 Score=26.40 Aligned_cols=55 Identities=18% Similarity=0.169 Sum_probs=42.2
Q ss_pred EEEEEEcCCCCccCccEEEEEe--CCC-----c-eeeeeEecCceeEEEcCCCCCCeEEEEEEe
Q 003526 560 ATGTITLLSGQPKDGVSVEARS--ESK-----G-YYEETVTDTSGSYRLRGLHPDTTYVIKVVK 615 (813)
Q Consensus 560 v~G~V~~~~G~p~~gv~V~a~~--~~~-----~-~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~ 615 (813)
|.=.|.+..|+|+.+++|.+.- ++. . ...-..||.+|.+.-+...-| .|-|-...
T Consensus 44 VT~hVen~e~~pi~~~ev~lmKa~ds~~qPs~eig~~IGKTD~~Gki~Wk~~~kG-~Y~v~l~n 106 (131)
T PF10794_consen 44 VTFHVENAEGQPIKDFEVTLMKAADSDPQPSKEIGISIGKTDEEGKIIWKNGRKG-KYIVFLPN 106 (131)
T ss_pred EEEEEecCCCCcccceEEEEEeccccCCCCchhhceeecccCCCCcEEEecCCcc-eEEEEEcC
Confidence 4455668899999999999875 221 1 122367999999999999999 69988865
No 181
>PRK15248 fimbrial outer membrane usher protein StbC; Provisional
Probab=29.66 E-value=8.3e+02 Score=31.11 Aligned_cols=106 Identities=18% Similarity=0.103 Sum_probs=72.7
Q ss_pred eEecCCceEEeCccCCeeE---EEEEe--eccccccCCeeEEEecCCceEEEEEEEEEeeEEEEEEEEcCCCCccC-ccE
Q 003526 503 SVSWAGGSFHFDNLFPGNF---YLRPL--LKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 576 (813)
Q Consensus 503 ~~Td~~G~f~f~~L~PG~Y---~v~~~--~~ey~f~P~s~~V~V~~G~~~~v~~~~~r~~~sv~G~V~~~~G~p~~-gv~ 576 (813)
..||..|...+.+|.|=.- .|.+. ..+..+.-..+.|.-..|....+.|...+ ...+--++++.+|+|+| |+.
T Consensus 710 ~~Td~~G~avVp~L~pY~~N~i~ID~~~LP~dvel~~t~~~vvP~~GAiv~~~F~~~~-g~~~l~~l~~~dG~~lP~Ga~ 788 (853)
T PRK15248 710 AVVDRFGYAILPSLSPYRVNNVTLDTRKMRSDAELTGGSQQIVPYAGAIARVNFATIS-GKAVLISVKMPDGGIPPMGAD 788 (853)
T ss_pred CeECCCCeEEeCCCCCceeeeEEECCcCCCCCEEEcccEEeecccCCcEEEEEEEEee-ceEEEEEEEcCCCCcCCCceE
Confidence 5699999999998887332 22221 22344444566676778888888887754 45678889999999986 555
Q ss_pred EEEEeCCCceeeeeEecCceeEEEcCCCCCCeEEEEEEe
Q 003526 577 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVK 615 (813)
Q Consensus 577 V~a~~~~~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~ 615 (813)
|. ..++ ........+|..-|+++.|... +.|+.
T Consensus 789 V~--~~~g--~~~g~Vg~~G~vyl~~~~~~~~--l~V~w 821 (853)
T PRK15248 789 VF--NGEG--TNIGMVGQSGQIYARIAHPSGS--LLVRW 821 (853)
T ss_pred EE--CCCC--cEEEEEcCCCEEEEEcCCCCce--EEEEE
Confidence 54 2222 2447889999999999998754 44543
No 182
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=29.11 E-value=99 Score=28.97 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=22.2
Q ss_pred EecCceeEEEcCCCCCCeEEEEEEeecC
Q 003526 591 VTDTSGSYRLRGLHPDTTYVIKVVKKDG 618 (813)
Q Consensus 591 ~TD~~G~fr~~gL~PG~~Y~V~v~~~~~ 618 (813)
..+..-.++|.+|.|| .|.|.+-++++
T Consensus 38 ~~~~~~~~~f~~lp~G-~YAi~v~hD~N 64 (112)
T PF09912_consen 38 AKGGTVTITFEDLPPG-TYAIAVFHDEN 64 (112)
T ss_pred cCCCcEEEEECCCCCc-cEEEEEEEeCC
Confidence 3456779999999999 69999998654
No 183
>PRK15304 putative fimbrial outer membrane usher protein; Provisional
Probab=28.89 E-value=3.8e+02 Score=33.87 Aligned_cols=94 Identities=16% Similarity=0.158 Sum_probs=58.3
Q ss_pred eEeCCCccEEeccCCCCceEEEEEeCCCe----eeeecC----C-------cceeeeeeceEEEEEEccCCCCCCcc-ce
Q 003526 426 TSTGADGSFIGGPLYDDITYNVEASKPGY----YLRQVG----P-------NSFSCQKLSQISVRIYSKDDAGEPIP-SV 489 (813)
Q Consensus 426 t~Td~~G~f~~~~L~~~g~Y~i~A~k~gy----~~~~~~----~-------~~f~~~~l~~I~g~V~d~~~~g~Pl~-Gv 489 (813)
+.||..|.=.+..|.|=..-+|+...... .+.... | ..|...+.-.+-.++.+++ |+||| |+
T Consensus 659 v~Td~~G~AvvP~l~pY~~N~i~id~~~Lp~dvel~~t~~~VvPt~GAvv~v~F~~~~g~~~l~~l~~~~--G~~lPfGa 736 (801)
T PRK15304 659 VWTDFWGQAVIPGLTEWRKSRVEVNTNTLPKNMDLANGTKMIKAAHGAVSKVDFSVLNQRRVMLNVKRAD--GSPLPKGV 736 (801)
T ss_pred eEECCCCeEEeCCCCCceeeeEEECccCCCCCEEEccCEEEEEeCCCcEEEEEEEEccceEEEEEEEccC--CCcCCCcE
Confidence 58999999999888752222444433222 222110 1 3566666666667888876 99999 88
Q ss_pred EEEEEcCccceeeeEecCCceEEeCccCC-eeEEEE
Q 003526 490 LLSLSGDDGYRNNSVSWAGGSFHFDNLFP-GNFYLR 524 (813)
Q Consensus 490 ~vsLsg~~~~r~~~~Td~~G~f~f~~L~P-G~Y~v~ 524 (813)
.|....+ .....-..+|..-+.+|+| |...|+
T Consensus 737 ~V~~~~g---~~~g~Vg~~G~vyl~g~~~~~~l~v~ 769 (801)
T PRK15304 737 SIVDEKG---NYLTSAVDDGRVFLNDIDDIPALYAK 769 (801)
T ss_pred EEECCCC---cEEEEEeCCCEEEEECCCCCceEEEE
Confidence 8863222 2335667899988888876 444444
No 184
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=28.53 E-value=1.2e+02 Score=37.54 Aligned_cols=53 Identities=28% Similarity=0.337 Sum_probs=40.2
Q ss_pred CCCCCeEEEEEecCcchhhhcccCceeeeeEeCCCccEEecc-CCCCceEEEEEeCCCeeeeec
Q 003526 397 PPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGP-LYDDITYNVEASKPGYYLRQV 459 (813)
Q Consensus 397 ~pl~ga~V~l~~~~~~~~~~~~~~~~~~~t~Td~~G~f~~~~-L~~~g~Y~i~A~k~gy~~~~~ 459 (813)
.||++|.|.|+.+. ....+.+|+.||.-.|.= -..+..-+|+|.|+||.....
T Consensus 14 qpl~~A~V~V~~N~----------t~~~s~~t~~dG~~~l~~~yrlg~~l~v~a~k~gyv~ns~ 67 (807)
T PF10577_consen 14 QPLSDASVEVFGNQ----------TLTASGTTGNDGVVLLKFPYRLGTWLIVTASKDGYVPNSV 67 (807)
T ss_pred ccCCCCeEEEEece----------eEeecceecCCceEEEEEeccCCCeEEEEEecCCccCCCC
Confidence 58999999998763 356889999999865542 222345689999999998865
No 185
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=27.63 E-value=2.5e+02 Score=26.99 Aligned_cols=54 Identities=22% Similarity=0.411 Sum_probs=34.7
Q ss_pred ceEEEEEEccCCCCCCccceEEEE--EcCc----cceeeeEecCCceEEeC--ccCCeeEEEEE
Q 003526 470 SQISVRIYSKDDAGEPIPSVLLSL--SGDD----GYRNNSVSWAGGSFHFD--NLFPGNFYLRP 525 (813)
Q Consensus 470 ~~I~g~V~d~~~~g~Pl~Gv~vsL--sg~~----~~r~~~~Td~~G~f~f~--~L~PG~Y~v~~ 525 (813)
..+.+.+.|.+ |.|+.+..+++ .... ...-.....++|.|... .+.+|.|.|+.
T Consensus 69 ~~~~i~~~d~~--g~~~~~~~~~l~l~rp~~~~~D~~~~l~~~~~g~y~~~~~~~~~G~W~l~l 130 (146)
T PF05751_consen 69 NSLTIRLTDPN--GAPVSGAKLTLSLYRPTDAKLDFTLTLTESAPGVYRAPVPLLKKGRWYLRL 130 (146)
T ss_pred CeEEEEEEcCC--CCcCcCceEEEEEECCCCccCCeeEEeeECCCceEEEEcCCCCCccEEEEE
Confidence 56778888754 89998766665 3221 11223345678888873 45688888776
No 186
>PRK15304 putative fimbrial outer membrane usher protein; Provisional
Probab=27.43 E-value=1.3e+03 Score=29.01 Aligned_cols=105 Identities=17% Similarity=0.098 Sum_probs=72.4
Q ss_pred eEecCCceEEeCccCCeeEE-EE--E--eeccccccCCeeEEEecCCceEEEEEEEEEeeEEEEEEEEcCCCCccC-ccE
Q 003526 503 SVSWAGGSFHFDNLFPGNFY-LR--P--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 576 (813)
Q Consensus 503 ~~Td~~G~f~f~~L~PG~Y~-v~--~--~~~ey~f~P~s~~V~V~~G~~~~v~~~~~r~~~sv~G~V~~~~G~p~~-gv~ 576 (813)
..||..|.-.+.+|.|=+.. |. + +..+..+.-..+.|.-..|...-+.|...+ ...+-=++++.+|.|+| |+.
T Consensus 659 v~Td~~G~AvvP~l~pY~~N~i~id~~~Lp~dvel~~t~~~VvPt~GAvv~v~F~~~~-g~~~l~~l~~~~G~~lPfGa~ 737 (801)
T PRK15304 659 VWTDFWGQAVIPGLTEWRKSRVEVNTNTLPKNMDLANGTKMIKAAHGAVSKVDFSVLN-QRRVMLNVKRADGSPLPKGVS 737 (801)
T ss_pred eEECCCCeEEeCCCCCceeeeEEECccCCCCCEEEccCEEEEEeCCCcEEEEEEEEcc-ceEEEEEEEccCCCcCCCcEE
Confidence 47999999999999875542 22 2 123344545566677778888888887654 34677788899999987 444
Q ss_pred EEEEeCCCceeeeeEecCceeEEEcCCCCCCeEEEE
Q 003526 577 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIK 612 (813)
Q Consensus 577 V~a~~~~~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~ 612 (813)
|. .+++ ........+|.--|+||.|....+|+
T Consensus 738 V~--~~~g--~~~g~Vg~~G~vyl~g~~~~~~l~v~ 769 (801)
T PRK15304 738 IV--DEKG--NYLTSAVDDGRVFLNDIDDIPALYAK 769 (801)
T ss_pred EE--CCCC--cEEEEEeCCCEEEEECCCCCceEEEE
Confidence 43 2222 24467889999999999987544443
No 187
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=26.94 E-value=1.8e+02 Score=31.00 Aligned_cols=42 Identities=21% Similarity=0.292 Sum_probs=25.5
Q ss_pred ceEEEEEEcCcccccCcceeeEEE-ecCCceEEEe---------ecCCccEEEEEEe
Q 003526 120 LVTVTLMRLGQKHYDGTEKKTVSL-TDDSDQFLFR---------DVLPGKYRLEVKR 166 (813)
Q Consensus 120 ~v~VtL~~~~~~~~~~~~~~~~~~-t~~~g~f~F~---------~VlPG~Y~v~v~~ 166 (813)
.++|++.+..+. ..++..+ ....|.+.|. .+.+|.|+++|..
T Consensus 130 ~v~v~I~D~~G~-----vV~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~V~a 181 (230)
T PRK12633 130 KVTVKVLDPSGA-----VVRTMELGDLKTGVHTLQWDGNNDGGQPLADGKYSITVSA 181 (230)
T ss_pred EEEEEEEeCCCC-----EEEEEecCCCCCCceeEEECCCCCCCCcCCCcceEEEEEE
Confidence 677888776654 2333333 2334544443 3788999999973
No 188
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=26.70 E-value=3.6e+02 Score=25.63 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=32.0
Q ss_pred eeeEecCCceEEeCccCCee-EEEEEeeccccccCCeeEEEecCCceEEEEEEEEE
Q 003526 501 NNSVSWAGGSFHFDNLFPGN-FYLRPLLKEYAFSPPAQAIELGSGESREVIFQATR 555 (813)
Q Consensus 501 ~~~~Td~~G~f~f~~L~PG~-Y~v~~~~~ey~f~P~s~~V~V~~G~~~~v~~~~~r 555 (813)
.++.|+.+|.+.+..-.+.. -.+...+.++.-.|.. |+|..++...|.|....
T Consensus 50 ~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~--Vtl~~~~sk~V~~~i~~ 103 (121)
T PF06030_consen 50 NTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKE--VTLPPNESKTVTFTIKM 103 (121)
T ss_pred eeeEecCCEEEEECCCCcccCcccCcchHHhccCCcE--EEECCCCEEEEEEEEEc
Confidence 35678999998885444332 2233223333322333 99999999888776543
No 189
>PRK15284 putative fimbrial outer membrane usher protein StfC; Provisional
Probab=26.70 E-value=1.3e+03 Score=29.58 Aligned_cols=106 Identities=14% Similarity=0.135 Sum_probs=71.3
Q ss_pred eEecCCceEEeCccCCeeEE---EEEe--eccccccCCeeEEEecCCceEEEEEEEEEeeEEEEEEEEcCCCCccC-ccE
Q 003526 503 SVSWAGGSFHFDNLFPGNFY---LRPL--LKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 576 (813)
Q Consensus 503 ~~Td~~G~f~f~~L~PG~Y~---v~~~--~~ey~f~P~s~~V~V~~G~~~~v~~~~~r~~~sv~G~V~~~~G~p~~-gv~ 576 (813)
..||..|...+.+|.|=... |.+. ..+..+.-..+.|.-..|...-+.|...+ ...+.=++++.+|.|+| |+.
T Consensus 706 v~Td~~G~AvVp~l~pY~~N~i~ID~~~LP~dvel~~t~~~vvPt~GAiv~~~F~~~~-g~~~l~~l~~~dG~~lPfGa~ 784 (881)
T PRK15284 706 VYTNMFGKAVVADVNNYYRNQAYIDLNNLPEDAEATQSVVQATLTEGAIGYRKFAVIS-GQKAMAVLRLRDGSHPPFGAE 784 (881)
T ss_pred ceECCCCeEEeCCCCcceeeeEEECCcCCCCCEEEccCEEEEEEcCCcEEEEEEEEee-eeEEEEEEEcCCCCcCCCceE
Confidence 47999999999999874432 2221 12234444566677778888778887644 33555678899999886 555
Q ss_pred EEEEeCCCceeeeeEecCceeEEEcCCCCCCeEEEEEEe
Q 003526 577 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVK 615 (813)
Q Consensus 577 V~a~~~~~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~v~~ 615 (813)
|. ...+ ........+|.--|+||.|... +.++.
T Consensus 785 V~--~~~g--~~~giVg~~G~vyL~gl~~~~~--l~V~w 817 (881)
T PRK15284 785 VK--NDNQ--QQVGLVDDDGNVYLAGVKPGEH--MQVFW 817 (881)
T ss_pred EE--cCCC--ceEEEEcCCCEEEEEccCCCce--EEEEE
Confidence 54 2222 2457889999999999998754 44544
No 190
>PRK15314 outer membrane protein RatB; Provisional
Probab=26.25 E-value=1.6e+02 Score=39.98 Aligned_cols=68 Identities=21% Similarity=0.220 Sum_probs=40.3
Q ss_pred eCCCccEEeccCCCCceEEEEEeCCCeeeeecCC----c-----ceeee------eec---eEEEEEEccCCCCCCccce
Q 003526 428 TGADGSFIGGPLYDDITYNVEASKPGYYLRQVGP----N-----SFSCQ------KLS---QISVRIYSKDDAGEPIPSV 489 (813)
Q Consensus 428 Td~~G~f~~~~L~~~g~Y~i~A~k~gy~~~~~~~----~-----~f~~~------~l~---~I~g~V~d~~~~g~Pl~Gv 489 (813)
+...+.|.+-+|..++...-+.....+.+.-..| + .+.+. |.+ -+.+.|+|.+ |+|++|+
T Consensus 1835 ~~st~yyQ~inL~TG~~~t~t~st~~lqlCL~~p~~~sItLtS~a~d~~k~aavAKKGe~iPltVTVkd~~--G~P~an~ 1912 (2435)
T PRK15314 1835 THSDSQFQYVRLSDNNTLTTKANTATAQLCLAKRRDLSIELTSSDMDADKGAPVAKKGESLPLTVTVRDGS--GTPQPNT 1912 (2435)
T ss_pred ccccceEEEEEcccCCceeeccCchhhheeecCCCcceeEeeccccccccccchhccCCccceEEEEecCC--CCccCCc
Confidence 4457788888887655555544444444333221 1 11111 112 1467888775 9999999
Q ss_pred EEEEEcCc
Q 003526 490 LLSLSGDD 497 (813)
Q Consensus 490 ~vsLsg~~ 497 (813)
.|.|..+.
T Consensus 1913 ~v~L~Rg~ 1920 (2435)
T PRK15314 1913 AIRLGRTL 1920 (2435)
T ss_pred eEEEeccc
Confidence 99997654
No 191
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=25.05 E-value=2.2e+02 Score=30.87 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=16.7
Q ss_pred eeeEecCceeEEEcCCCCCCeEEEEEEee
Q 003526 588 EETVTDTSGSYRLRGLHPDTTYVIKVVKK 616 (813)
Q Consensus 588 ~~a~TD~~G~fr~~gL~PG~~Y~V~v~~~ 616 (813)
.+..+|.+|. .|++| .|++++.+.
T Consensus 171 ~WDG~d~~G~----~~~~G-~Yt~~v~A~ 194 (259)
T PRK12812 171 EWDGRDNDGV----YAGDG-EYTIKAVYN 194 (259)
T ss_pred EECCCCCCCC----cCCCe-eeEEEEEEE
Confidence 4445666666 47789 699999864
No 192
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=24.64 E-value=87 Score=25.59 Aligned_cols=24 Identities=38% Similarity=0.648 Sum_probs=20.8
Q ss_pred CceeEEEcCCCCCCeEEEEEEeec
Q 003526 594 TSGSYRLRGLHPDTTYVIKVVKKD 617 (813)
Q Consensus 594 ~~G~fr~~gL~PG~~Y~V~v~~~~ 617 (813)
....|.|.+|.|+..|.+++.+..
T Consensus 55 ~~~~~~i~~l~p~~~Y~~~v~a~~ 78 (93)
T cd00063 55 SETSYTLTGLKPGTEYEFRVRAVN 78 (93)
T ss_pred cccEEEEccccCCCEEEEEEEEEC
Confidence 667899999999999999998753
No 193
>PRK09828 putative fimbrial outer membrane usher protein; Provisional
Probab=24.56 E-value=4e+02 Score=33.90 Aligned_cols=94 Identities=15% Similarity=0.111 Sum_probs=58.7
Q ss_pred eEeCCCccEEeccCCCCceEEEEEeCCC----eeeeecC----C-------cceeeeeeceEEEEEEccCCCCCCcc-ce
Q 003526 426 TSTGADGSFIGGPLYDDITYNVEASKPG----YYLRQVG----P-------NSFSCQKLSQISVRIYSKDDAGEPIP-SV 489 (813)
Q Consensus 426 t~Td~~G~f~~~~L~~~g~Y~i~A~k~g----y~~~~~~----~-------~~f~~~~l~~I~g~V~d~~~~g~Pl~-Gv 489 (813)
..||.+|.=.+..|.|=..=+|+..... ..+.... | ..|...+.-.+-.++.+++ |+||| |+
T Consensus 718 ~~Td~~G~avVP~l~pY~~N~i~ID~~~LP~dvel~~t~~~vvPt~GAvv~~~F~~~~g~~~ll~l~~~~--G~~lP~Ga 795 (865)
T PRK09828 718 STIDRWGYGVTSALSPYRENRVALDINTLENDVELKSTSAVAVPRQGAVVLADFETDQGRSAIMNITRSD--GKNIPFAA 795 (865)
T ss_pred ceeCCCCeEEeCCCCCceeeeEEECCcCCCCCeEecccEEEEEecCCcEEEEEEEeecceEEEEEEECCC--CCcCCCce
Confidence 4799999988887875111134433222 2222110 1 3566666666778888876 99999 88
Q ss_pred EEEEEcCccceeeeEecCCceEEeCccCCe-eEEEE
Q 003526 490 LLSLSGDDGYRNNSVSWAGGSFHFDNLFPG-NFYLR 524 (813)
Q Consensus 490 ~vsLsg~~~~r~~~~Td~~G~f~f~~L~PG-~Y~v~ 524 (813)
.|....+ .....-+.+|..-+.+|++. ...|+
T Consensus 796 ~V~~~~g---~~~g~Vg~~G~vyl~gl~~~~~l~v~ 828 (865)
T PRK09828 796 DVYDEQG---NVIGNVGQGGQAFVRGIEDQGELRIR 828 (865)
T ss_pred EEECCCC---cEEEEEeCCCEEEEEcCCCCceEEEE
Confidence 8863222 23356788999888888865 44444
No 194
>PRK15198 outer membrane usher protein FimD; Provisional
Probab=24.44 E-value=1.3e+03 Score=29.31 Aligned_cols=104 Identities=17% Similarity=0.125 Sum_probs=69.6
Q ss_pred eEecCCceEEeCccCCeeE---EEEEe--eccccccCCeeEEEecCCceEEEEEEEEEeeEEEEEEEEcCCCCccC-ccE
Q 003526 503 SVSWAGGSFHFDNLFPGNF---YLRPL--LKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 576 (813)
Q Consensus 503 ~~Td~~G~f~f~~L~PG~Y---~v~~~--~~ey~f~P~s~~V~V~~G~~~~v~~~~~r~~~sv~G~V~~~~G~p~~-gv~ 576 (813)
..||..|...+..|.|=.. .|.+. ..+..+.-..+.|.-..|....+.|...+ ...+-=+++. +|+|+| |+.
T Consensus 715 ~~Td~~G~AvVp~l~pY~~N~i~iD~~~LP~nvei~~t~~~vvPt~GAvv~v~F~~~~-g~~~ll~~~~-~G~~lP~Ga~ 792 (860)
T PRK15198 715 VKTDWRGYAVMPYATVYRYNRVALDTNTMGNSTDVENNVSSVVPTQGALVRANFDTRI-GVRALITVTQ-GGKPVPFGAL 792 (860)
T ss_pred CEECCCCeEEeCCCCcceeeeEEECCcCCCCCeEecccEEEEEecCCcEEEEEEEEee-eeEEEEEEcc-CCCCCCCceE
Confidence 5899999999998886443 22222 22344444566777788898888887654 3355556665 899986 555
Q ss_pred EEEEeCCCceeeeeEecCceeEEEcCCCCCCeEEEE
Q 003526 577 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIK 612 (813)
Q Consensus 577 V~a~~~~~~~~~~a~TD~~G~fr~~gL~PG~~Y~V~ 612 (813)
|. ..++. .......+|.--|++|.|....+|+
T Consensus 793 V~--~~~~~--~~g~Vg~~G~vyl~gl~~~~~l~v~ 824 (860)
T PRK15198 793 VR--ETSSG--ITSMVGDDGQIYLSGLPLSGELLIQ 824 (860)
T ss_pred EE--CCCCc--EEEEECCCCEEEEEcCCCCceEEEE
Confidence 53 22221 4578899999999999987544443
No 195
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=24.31 E-value=1.1e+02 Score=24.43 Aligned_cols=26 Identities=23% Similarity=0.565 Sum_probs=19.9
Q ss_pred EEEEEEccCCCCCCccceEEEEEcCccc
Q 003526 472 ISVRIYSKDDAGEPIPSVLLSLSGDDGY 499 (813)
Q Consensus 472 I~g~V~d~~~~g~Pl~Gv~vsLsg~~~~ 499 (813)
+.++++|. +|+|++++-+.|..++++
T Consensus 17 ltVt~kda--~G~pv~n~~f~l~r~~~~ 42 (47)
T PF05688_consen 17 LTVTVKDA--NGNPVPNAPFTLTRGDAK 42 (47)
T ss_pred EEEEEECC--CCCCcCCceEEEEecCcc
Confidence 34566665 599999999999877653
No 196
>PRK15217 fimbrial outer membrane usher protein; Provisional
Probab=23.52 E-value=5.2e+02 Score=32.79 Aligned_cols=107 Identities=15% Similarity=0.126 Sum_probs=0.0
Q ss_pred CCCCCeEEEEEecCcchhhhcccCceeeeeEeCCCccEEeccCCCCceEEEEEeCCCeeeeecC--------C-------
Q 003526 397 PPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQVG--------P------- 461 (813)
Q Consensus 397 ~pl~ga~V~l~~~~~~~~~~~~~~~~~~~t~Td~~G~f~~~~L~~~g~Y~i~A~k~gy~~~~~~--------~------- 461 (813)
+.++||.| ... ..+.||.+|.=.+..|.|=..-+|.......-....- |
T Consensus 677 ~g~~gv~V--~n~--------------~~~~Td~~G~AvvP~l~pY~~N~i~ID~~~LP~dvel~~t~~~vvPt~GAiv~ 740 (826)
T PRK15217 677 PGLEGAYV--NGQ--------------KYRTTNRKGVVVYDGLTPYRENHLMLDVSQSDSETELRGNRKIAAPYRGAVVL 740 (826)
T ss_pred CCCCCcEE--eCC--------------CCCeECCCCEEEeCCCCCceeceEEECCcCCCCCEEecccEEEEEecCCcEEE
Q ss_pred cceeeeeeceEEEEEEccCCCCCCcc-ceEEEEEcCccceeeeEecCCceEEeCccC-CeeEEEE
Q 003526 462 NSFSCQKLSQISVRIYSKDDAGEPIP-SVLLSLSGDDGYRNNSVSWAGGSFHFDNLF-PGNFYLR 524 (813)
Q Consensus 462 ~~f~~~~l~~I~g~V~d~~~~g~Pl~-Gv~vsLsg~~~~r~~~~Td~~G~f~f~~L~-PG~Y~v~ 524 (813)
..|...+.-.+-.++++++ |+||| |+.|. .+.-........+|..-+.++. +|...|+
T Consensus 741 ~~F~~~~g~~~ll~l~~~~--G~~lP~Ga~V~---~~~g~~~g~Vg~~G~vyl~g~~~~~~l~v~ 800 (826)
T PRK15217 741 VNFDTDQRKPWFIKALRAD--GQPLTFGYEVN---DIHGHNIGVVGQGSQLFIRTNEVPPSVKVA 800 (826)
T ss_pred EEEEEecceEEEEEEEcCC--CCcCCCceEEE---CCCCcEEEEEcCCCeEEEEcCCCCceEEEE
No 197
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=23.03 E-value=3.5e+02 Score=25.95 Aligned_cols=55 Identities=16% Similarity=0.203 Sum_probs=37.6
Q ss_pred EEEEEEcCCCCccCccEEEEEe--CC---CceeeeeEecCceeEEE--cCCCCCCeEEEEEEe
Q 003526 560 ATGTITLLSGQPKDGVSVEARS--ES---KGYYEETVTDTSGSYRL--RGLHPDTTYVIKVVK 615 (813)
Q Consensus 560 v~G~V~~~~G~p~~gv~V~a~~--~~---~~~~~~a~TD~~G~fr~--~gL~PG~~Y~V~v~~ 615 (813)
+.=+++|.+|.|+.+..+.+.= .. ....-.-...++|.|+. ..+.+| .|.|.+..
T Consensus 71 ~~i~~~d~~g~~~~~~~~~l~l~rp~~~~~D~~~~l~~~~~g~y~~~~~~~~~G-~W~l~l~~ 132 (146)
T PF05751_consen 71 LTIRLTDPNGAPVSGAKLTLSLYRPTDAKLDFTLTLTESAPGVYRAPVPLLKKG-RWYLRLDW 132 (146)
T ss_pred EEEEEEcCCCCcCcCceEEEEEECCCCccCCeeEEeeECCCceEEEEcCCCCCc-cEEEEEEE
Confidence 5556678899999998888752 11 22333444688899988 456788 58888843
No 198
>PRK06764 hypothetical protein; Provisional
Probab=22.58 E-value=1.5e+02 Score=26.56 Aligned_cols=66 Identities=18% Similarity=0.254 Sum_probs=36.3
Q ss_pred ecCccccCceEEEeecCceEEEEEEEEccccccccccEEEEEEecCCCCceEEEEeeCCCceEEeecCCCceEEEEEEee
Q 003526 636 VGSGDIKGLDFLVFEQPEKTILSGHVEGNRIKELNSHLLVEIKSASDTSKVESVISLPMSNFFQVKDLPKGKHLLQLRSS 715 (813)
Q Consensus 636 V~~~dv~gv~f~~~~~~~~~~vsg~V~~s~~~~~~~~l~v~l~~~~~~~~v~~~~~l~~~~~F~~~~lp~G~Y~v~l~s~ 715 (813)
+..+....++. .+.+...|.++|+...- .+++. +. ..+++ -...|. .+|+|.+++..|
T Consensus 36 ~~~enfn~i~v-~mn~~e~y~lsgrsidi-------------lsgdk-ea----iqlnk-yti~f~--kpg~yvirvngc 93 (105)
T PRK06764 36 VKEENFNAIDV-SMNINELYVLSGRSIDV-------------LSGDK-EA----IQLNK-YTIRFS--KPGKYVIRVNGC 93 (105)
T ss_pred hhhcccceEEE-EEeccceEEEcCceeee-------------ecCCh-hh----eEeee-eEEEec--CCccEEEEEccE
Confidence 34445555553 45567888888886321 11111 11 11221 122331 369999999999
Q ss_pred CCCCceee
Q 003526 716 LPSSTHRF 723 (813)
Q Consensus 716 l~~~~~~y 723 (813)
.-..-|+|
T Consensus 94 iy~dvytf 101 (105)
T PRK06764 94 IYNDVYTF 101 (105)
T ss_pred EeeeeEEE
Confidence 75666776
No 199
>PRK15213 fimbrial outer membrane usher protein PefC; Provisional
Probab=22.14 E-value=7.1e+02 Score=31.40 Aligned_cols=103 Identities=18% Similarity=0.223 Sum_probs=0.0
Q ss_pred CCCCCeEEEEEecCcchhhhcccCceeeeeEeCCCccEEeccCCCCceEEEEEe----CCCeeeeecC----C-------
Q 003526 397 PPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEAS----KPGYYLRQVG----P------- 461 (813)
Q Consensus 397 ~pl~ga~V~l~~~~~~~~~~~~~~~~~~~t~Td~~G~f~~~~L~~~g~Y~i~A~----k~gy~~~~~~----~------- 461 (813)
+.++||.| . ....||..|.=.+. |.|=..-+|+.. ..+..+.... |
T Consensus 655 ~g~~gv~V----~--------------~~~~Td~~G~alVP-l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~gAvv~ 715 (797)
T PRK15213 655 KDVPGVKF----N--------------GSGPTDSKGNTVVP-LSSYDLNTVTVNAENLPLNTELTTTSQNVVPTDKAVVY 715 (797)
T ss_pred CCCCCCEE----C--------------CCcEECCCCeEEEe-CCCceeeeEEECccCCCCCEEecccEEEEEecCCcEEE
Q ss_pred cceeeeeeceEEEEEEccCCCCCCcc-ceEEEEEcCccceeeeEecCCceEEeCccC-CeeEEE
Q 003526 462 NSFSCQKLSQISVRIYSKDDAGEPIP-SVLLSLSGDDGYRNNSVSWAGGSFHFDNLF-PGNFYL 523 (813)
Q Consensus 462 ~~f~~~~l~~I~g~V~d~~~~g~Pl~-Gv~vsLsg~~~~r~~~~Td~~G~f~f~~L~-PG~Y~v 523 (813)
..|...+.-.+-.++.+++ |+||| |+.|. .+.-......+.+|..-+.+|+ .|...|
T Consensus 716 ~~F~~~~g~~~ll~l~~~~--G~~lP~Ga~v~---~~~g~~~g~Vg~~G~vyl~gl~~~~~l~v 774 (797)
T PRK15213 716 REFKALKVLRYILRVKQKD--GRFVPGGSWAR---NEQGTPLGFVANNGVLLMNLLDAPGDISV 774 (797)
T ss_pred EEEEEEeeeEEEEEEEccC--CCcCCCCeEEE---CCCCcEEEEEcCCCEEEEEcCCCCCEEEE
No 200
>PRK09619 flgD flagellar basal body rod modification protein; Reviewed
Probab=20.66 E-value=4.3e+02 Score=27.88 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=27.1
Q ss_pred EEEEEccCCceEEEEEecCCCcccceeeeeCCCCcEEEE-------ecCcceEEEEeec
Q 003526 21 GVVRTVGSGNKVKVALTHGPDKVKPQVKQTDNNGNFCFE-------VPPGEYRLSAMAA 72 (813)
Q Consensus 21 G~V~~~~~~~~~~v~lt~g~~~~k~~t~~t~~~G~Fcf~-------l~pG~Y~l~v~~~ 72 (813)
+.+.-..+-...+|.+.....+++....-....|.+.|. +|+|.|++++...
T Consensus 114 ~~~~L~~~a~~v~v~I~D~~G~v~t~~l~~~~aG~~~f~WDG~~~~lp~G~Y~~~V~a~ 172 (218)
T PRK09619 114 GRLTLKHPAPTLTLHITDILGQEKKIDLGKQPAGPVNFTLDPAALGLQPGQYQLSVVSG 172 (218)
T ss_pred EEEecCCcCcEEEEEEEeCCCCEEEEecCCcCCCceeEEECCCCCCCCCceeEEEEEEe
Confidence 344433344456666642222242111113355666665 7889999998753
No 201
>PF09134 Invasin_D3: Invasin, domain 3; InterPro: IPR015217 This domain adopts a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, arranged in a Greek-key topology. It forms part of the extracellular region of the protein, which can be expressed as a soluble protein (Inv497) that binds integrins and promotes subsequent uptake by cells when attached to bacteria []. ; PDB: 1CWV_A.
Probab=20.39 E-value=3.1e+02 Score=25.39 Aligned_cols=61 Identities=11% Similarity=0.237 Sum_probs=23.6
Q ss_pred eceEEEEEEccCCCCCCccceE-EEEEcC-ccceeeeEecCCceEEe--CccCCeeEEEEEeecccc
Q 003526 469 LSQISVRIYSKDDAGEPIPSVL-LSLSGD-DGYRNNSVSWAGGSFHF--DNLFPGNFYLRPLLKEYA 531 (813)
Q Consensus 469 l~~I~g~V~d~~~~g~Pl~Gv~-vsLsg~-~~~r~~~~Td~~G~f~f--~~L~PG~Y~v~~~~~ey~ 531 (813)
-+.+....+|.. |+|+.|.. ++.... ....-...+...|.|.- .+-.+|+++|.|...+..
T Consensus 22 ta~LTfta~D~~--g~pvsGl~~l~f~~~g~~vtls~itE~~GvYtATl~Gt~~G~vtI~P~v~G~~ 86 (99)
T PF09134_consen 22 TATLTFTARDAN--GNPVSGLSVLAFVQDGVPVTLSPITENPGVYTATLKGTSAGEVTITPQVNGQP 86 (99)
T ss_dssp -EEEEEE-B-TT--S-B--S--SEEEEEEES--EE---EE-SS-EEEEEE-SS-EEEEEEEEETTEE
T ss_pred eEEEEEEEEcCC--CCcccCceeEEEEccCCCcEEccccccCCEEEEEEEcccCceEEEEEeeCCEE
Confidence 344555556554 88888755 443221 11122233444566643 344677777777766543
No 202
>PRK15316 RatA-like protein; Provisional
Probab=20.04 E-value=2.4e+02 Score=38.56 Aligned_cols=29 Identities=21% Similarity=0.461 Sum_probs=20.6
Q ss_pred eEEEEEEccCCCCCCccceEEEEEcCccc
Q 003526 471 QISVRIYSKDDAGEPIPSVLLSLSGDDGY 499 (813)
Q Consensus 471 ~I~g~V~d~~~~g~Pl~Gv~vsLsg~~~~ 499 (813)
.|-++|.-.|..|+|++++.|.|..+.++
T Consensus 1596 ~ipi~VtttdA~Gnpv~ntpf~LkR~~s~ 1624 (2683)
T PRK15316 1596 DAVIRVVTKNAQGNSVPNVPFILRREGSK 1624 (2683)
T ss_pred ceeEEEEeeccCCCccCCCceEEeecccc
Confidence 44445544455699999999999876554
Done!