Query 003526
Match_columns 813
No_of_seqs 211 out of 251
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 17:28:25 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003526.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1577-1580//hhsearch_pdb/003526hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pz4_A Protein GBS052; SPAB, G 1.0 1 1 86.9 12.5 149 483-639 29-219 (239)
2 2pz4_A Protein GBS052; SPAB, G 1.0 1 1 73.7 15.6 153 398-551 31-226 (239)
3 2x9x_A RRGB, cell WALL surface 1.0 1 1 70.9 16.9 213 393-641 171-417 (444)
4 2x9x_A RRGB, cell WALL surface 1.0 1 1 66.4 18.0 231 469-736 159-416 (444)
5 1cwv_A Invasin; integrin-bindi 1.0 1 1 65.3 19.4 17 560-576 227-243 (492)
6 3mn8_A LP15968P; catalytic dom 1.0 1 1 63.9 8.5 82 468-555 335-418 (435)
7 1h8l_A Carboxypeptidase GP180 1.0 1 1 63.4 9.1 81 466-553 297-377 (380)
8 1uwy_A Carboxypeptidase M; met 1.0 1 1 63.3 7.8 71 469-545 295-365 (426)
9 2y1v_A RRGB, cell WALL surface 1.0 1 1 62.4 17.5 206 396-639 329-570 (605)
10 2y1v_A RRGB, cell WALL surface 1.0 1 1 61.3 17.6 233 469-736 314-571 (605)
No 1
>2pz4_A Protein GBS052; SPAB, GRAM-positive pilins, adhesions, IGG-like domain, cell adhesion; 1.80A {Streptococcus agalactiae} PDB: 3phs_A
Probab=1.00 E-value=1 Score=86.87 Aligned_cols=149 Identities=19% Similarity=0.199 Sum_probs=87.4
Q ss_pred CCCCCCEEEEEECCCC-----------------------CEEEEEECCCCEEEECCCCCEEEEEEEEEC-CCCCCCCEEE
Q ss_conf 9985614999984865-----------------------403368508931996745881099997403-4200697038
Q 003526 483 GEPIPSVLLSLSGDDG-----------------------YRNNSVSWAGGSFHFDNLFPGNFYLRPLLK-EYAFSPPAQA 538 (813)
Q Consensus 483 g~Pl~Gv~vsLsg~~~-----------------------~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~-ey~f~P~s~~ 538 (813)
+.||+||.+.|+..++ .....+||++|.+.|.+|++|.|+|+.... +-...+....
T Consensus 29 g~~L~Ga~F~l~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~tTd~~G~~~~~~L~~G~Y~v~Et~aP~G~l~~~~~~ 108 (239)
T 2pz4_A 29 GTPIEGVLYQLYQLKSTEDGDLLAHWNSLTITELKKQAQQVFEATTNQQGKATFNQLPDGIYYGLAVKAGEKNRNVSAFL 108 (239)
T ss_dssp CEECSSCEEEEEEESCCCCTTHHHHHHTSCHHHHHHHEEEEEEEECCTTSEEEEEEEESEEEEEEEEETTEECTTBCCEE
T ss_pred CCCCCCCEEEEEEECCCCCCCCCCHHHHHCHHHHHCCCCCEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCEEE
T ss_conf 97739958999993686565210201120311232047720599978998399897798259999987999953676589
Q ss_pred EEECCCCEEEEEEEEEEEEEEEEEEEECCCC---CCCCCCEEEEEECCCCEE---------------EEEEECCCEEEEE
Q ss_conf 9944886389999987766999999994899---844761999985888603---------------4457628646997
Q 003526 539 IELGSGESREVIFQATRVAYSATGTITLLSG---QPKDGVSVEARSESKGYY---------------EETVTDTSGSYRL 600 (813)
Q Consensus 539 V~V~~G~~~~v~~~~~r~~~sv~G~V~~~~G---~p~~gv~V~a~~~~~~~~---------------~~atTD~~G~frl 600 (813)
|++... ..+...-.+..+++.-.-.+.+| .+++||.+.+....+... ...+||++|.+.|
T Consensus 109 v~i~~d--v~v~~~n~~~~g~~~i~K~d~~~~~~~~L~GA~F~l~~~~g~~~~~~~~g~~~~~~~~~~~~~Td~~G~~~~ 186 (239)
T 2pz4_A 109 VDLSED--KVIYPKIIWSTGELDLLKVGVDGDTKKPLAGVVFELYEKNGRTPIRVKNGVHSQDIDAAKHLETDSSGHIRI 186 (239)
T ss_dssp EEESSC--EEECCCBCCCEEEEEEEEEEEETTEEEECCSCEEEEEETTCSSCBCEETTEECCSTTCBSCEECCTTSEEEE
T ss_pred EEECCC--EEEEEEEEEEECCEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCEECCCCCCEEEEECCCCEEEE
T ss_conf 995797--699871556512289999646788770069989999968999987502660412665404899899982998
Q ss_pred CCCCCCCEEEEEEEEECCCCCCCEECCCCCEEEEEECCC
Q ss_conf 687999839999995069888510013773599993586
Q 003526 601 RGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSG 639 (813)
Q Consensus 601 ~gL~PG~~Y~V~v~~~~~~~~~~~~~~~p~~~~V~V~~~ 639 (813)
.+|.+|.||..++.++++ .. -....+.++|...
T Consensus 187 ~~L~~G~Y~l~EtkAP~G--Y~----l~~~~~~f~i~~~ 219 (239)
T 2pz4_A 187 SGLIHGDYVLKEIETQSG--YQ----IGQAETAVTIEKS 219 (239)
T ss_dssp EEEESEEEEEEEEECCTT--BC----CCCSEEEEEECTT
T ss_pred CCCCCCEEEEEEEECCCC--CC----CCCCCEEEEEECC
T ss_conf 998883499999888999--58----6996489999489
No 2
>2pz4_A Protein GBS052; SPAB, GRAM-positive pilins, adhesions, IGG-like domain, cell adhesion; 1.80A {Streptococcus agalactiae} PDB: 3phs_A
Probab=1.00 E-value=1 Score=73.67 Aligned_cols=153 Identities=17% Similarity=0.240 Sum_probs=98.9
Q ss_pred CCCCEEEEEEECCCC----H---HHHC------CCCCEEEEEEECCCCCEEECCCCCCCEEEEEEEC-CCEEEEECC---
Q ss_conf 988709999935740----1---2210------2475035668479951881457999539999958-982664127---
Q 003526 398 PLSGVNIRIIAAEDS----Q---IASL------KKGHLALETSTGADGSFIGGPLYDDITYNVEASK-PGYYLRQVG--- 460 (813)
Q Consensus 398 pi~ga~V~l~~~~~~----~---~~~~------~~~~~~~~t~Td~~G~y~~~~L~~~g~Y~i~A~k-~gy~~~~~~--- 460 (813)
||+||..+|....+. . |..+ +.+....+.+||++|.+.|.+|++ |.|.|.-.+ |.-.+....
T Consensus 31 ~L~Ga~F~l~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~tTd~~G~~~~~~L~~-G~Y~v~Et~aP~G~l~~~~~~v 109 (239)
T 2pz4_A 31 PIEGVLYQLYQLKSTEDGDLLAHWNSLTITELKKQAQQVFEATTNQQGKATFNQLPD-GIYYGLAVKAGEKNRNVSAFLV 109 (239)
T ss_dssp ECSSCEEEEEEESCCCCTTHHHHHHTSCHHHHHHHEEEEEEEECCTTSEEEEEEEES-EEEEEEEEETTEECTTBCCEEE
T ss_pred CCCCCEEEEEEECCCCCCCCCCHHHHHCHHHHHCCCCCEEEEEECCCCEEEECCCCC-EEEEEEEEECCCCCCCCCEEEE
T ss_conf 739958999993686565210201120311232047720599978998399897798-2599999879999536765899
Q ss_pred --CCCE----E-EEEECEEEEEEECCCC-CCCCCCCEEEEEECCCCC--E--------------EEEEECCCCEEEECCC
Q ss_conf --8520----5-5321008999991499-999856149999848654--0--------------3368508931996745
Q 003526 461 --PNSF----S-CQKLSQISVRIYSKDD-AGEPIPSVLLSLSGDDGY--R--------------NNSVSWAGGSFHFDNL 516 (813)
Q Consensus 461 --~~~f----~-~~~l~~I~g~V~d~~~-~g~Pl~Gv~vsLsg~~~~--r--------------~~~~Td~~G~f~f~~L 516 (813)
+.+. . ....+.+.+.-.|.++ .+.+|+||.+.|...++. . ...+||++|.+.|.+|
T Consensus 110 ~i~~dv~v~~~n~~~~g~~~i~K~d~~~~~~~~L~GA~F~l~~~~g~~~~~~~~g~~~~~~~~~~~~~Td~~G~~~~~~L 189 (239)
T 2pz4_A 110 DLSEDKVIYPKIIWSTGELDLLKVGVDGDTKKPLAGVVFELYEKNGRTPIRVKNGVHSQDIDAAKHLETDSSGHIRISGL 189 (239)
T ss_dssp EESSCEEECCCBCCCEEEEEEEEEEEETTEEEECCSCEEEEEETTCSSCBCEETTEECCSTTCBSCEECCTTSEEEEEEE
T ss_pred EECCCEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCEECCCCCCEEEEECCCCEEEECCC
T ss_conf 95797699871556512289999646788770069989999968999987502660412665404899899982998998
Q ss_pred CCEEEEEEEEE--CCCCCCCCEEEEEECCCCEEEEEE
Q ss_conf 88109999740--342006970389944886389999
Q 003526 517 FPGNFYLRPLL--KEYAFSPPAQAIELGSGESREVIF 551 (813)
Q Consensus 517 ~PG~Y~v~~~~--~ey~f~P~s~~V~V~~G~~~~v~~ 551 (813)
++|.|+|+... .+|........++|..+....+.+
T Consensus 190 ~~G~Y~l~EtkAP~GY~l~~~~~~f~i~~~~~~~~~v 226 (239)
T 2pz4_A 190 IHGDYVLKEIETQSGYQIGQAETAVTIEKSKTVTVTI 226 (239)
T ss_dssp ESEEEEEEEEECCTTBCCCCSEEEEEECTTSEEEEEE
T ss_pred CCCEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEEE
T ss_conf 8834999998889995869964899994898299999
No 3
>2x9x_A RRGB, cell WALL surface anchor family protein; cell adhesion; 1.50A {Streptococcus pneumoniae} PDB: 2x9w_A 2x9y_A
Probab=1.00 E-value=1 Score=70.88 Aligned_cols=213 Identities=11% Similarity=0.109 Sum_probs=121.4
Q ss_pred EEEECC--CCCEEEEEEECCCCHHHHCCCCCEEEEEEECCCCCEEECCCCCCCEEEEEEE-CCCEEEEE--C-CCCCE--
Q ss_conf 454089--8870999993574012210247503566847995188145799953999995-89826641--2-78520--
Q 003526 393 GSVSPP--LSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEAS-KPGYYLRQ--V-GPNSF-- 464 (813)
Q Consensus 393 G~V~pp--i~ga~V~l~~~~~~~~~~~~~~~~~~~t~Td~~G~y~~~~L~~~g~Y~i~A~-k~gy~~~~--~-~~~~f-- 464 (813)
|..+++ .++|...|...+.. .......+||++|.+.|.+|.+.|+|.+.=. .+||.+.. . .++.|
T Consensus 171 g~~l~~~~g~~A~F~L~~~~~~-------~~v~~~~ttd~~G~~~~~~L~~~G~Y~v~Et~a~GY~l~~~~~~~~~~vtI 243 (444)
T 2x9x_A 171 ATGAPIPAGAEATFDLVNAQAG-------KVVQTVTLTTDKNTVTVNGLDKNTEYKFVERSIKGYSADYQEITTAGEIAV 243 (444)
T ss_dssp TTSCBCCCCSCEEEEEEETTTC-------CEEEEEEECTTCCEEEECSCCTTSCEEEEECCBTTBEEEECCCCSTTEEEE
T ss_pred CCCCCCCCCCCEEEEEEECCCC-------CEEEEEEEECCCCEEEECCCCCCCCEEEEEEECCCEEECCCCCCCCEEEEE
T ss_conf 9873455678669999978999-------588778986898359986788897589999843864804544577579999
Q ss_pred E---------------EEEECEEEEEEECCCCCCCCCCCEEEEEECCC--C-CE-EEEEECCCCEEEECCCCCEEEEEEE
Q ss_conf 5---------------53210089999914999998561499998486--5-40-3368508931996745881099997
Q 003526 465 S---------------CQKLSQISVRIYSKDDAGEPIPSVLLSLSGDD--G-YR-NNSVSWAGGSFHFDNLFPGNFYLRP 525 (813)
Q Consensus 465 ~---------------~~~l~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~--~-~r-~~~~Td~~G~f~f~~L~PG~Y~v~~ 525 (813)
. ....+.+.+.-+|.+ +.+|+||.+.|...+ + +. ....++++|.. .+|+||.|.+..
T Consensus 244 ~~~~~~~~~~~~~~~~~v~~g~v~~~KvD~~--~~~L~GA~F~l~~~~~~g~~v~~~~~~~~~~~~--~~L~~g~y~~~E 319 (444)
T 2x9x_A 244 KNWKDENPKPLDPTEPKVVTYGKKFVKVNDK--DNRLAGAEFVIANADNAGQYLARKADKVSQEEK--QLVVTTKDALDR 319 (444)
T ss_dssp EEECCCCCCCBCCCCCEEECEEEEEEEECTT--CCBCSCCEEEEESSSSSSCEEEECGGGSCHHHH--HHHHHHHHHHHH
T ss_pred ECCCCCCCCCCCCCCCEEEEEEEEEEEECCC--CCCCCCCEEEEEECCCCCCEEEEECCCCCCCCC--CCCCCCCEEEEE
T ss_conf 2366566310146542588520799998899--987287489999657798487541122444432--345655114421
Q ss_pred EECCCCCCCCEEEEEECCCCEEEEEEEEEEEEEEEEEEEECCCCCCCCCCEEEE------EECC-CCEEEEEEECCCEEE
Q ss_conf 403420069703899448863899999877669999999948998447619999------8588-860344576286469
Q 003526 526 LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEA------RSES-KGYYEETVTDTSGSY 598 (813)
Q Consensus 526 ~~~ey~f~P~s~~V~V~~G~~~~v~~~~~r~~~sv~G~V~~~~G~p~~gv~V~a------~~~~-~~~~~~atTD~~G~f 598 (813)
-..+|.-. .. +... .. .-...+..+..++||.+.+ .... .......+||++|.|
T Consensus 320 Ap~gY~~~--------t~-e~~~------~~----~~~kid~~~~~l~gA~~~~~~~~~~~~~~~~~~~~~~~td~~G~~ 380 (444)
T 2x9x_A 320 AVAAYNAL--------TA-QQQT------QQ----EKEKVDKAQAAYNAAVIAANNAFEWVADKDNENVVKLVSDAQGRF 380 (444)
T ss_dssp HHHHHHTS--------CC-C----------------CHHHHHHHHHHHHHHHHHCSSEEEESCTTCTTBCCEECCTTCEE
T ss_pred CCCCCCCC--------CC-CCCC------CC----EEEEECCCCCCCCCCEEECCCCEEECCCCCCCCEEEEEECCCCEE
T ss_conf 63321233--------31-1111------00----144413444323442110234225404556673159998999839
Q ss_pred EECCCCCCCEEEEEEEEECCCCCCCEECCCCCEEEEEECCCCC
Q ss_conf 9768799983999999506988851001377359999358645
Q 003526 599 RLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGDI 641 (813)
Q Consensus 599 rl~gL~PG~~Y~V~v~~~~~~~~~~~~~~~p~~~~V~V~~~dv 641 (813)
.|.+|.+|.||.++..+|++ .. .....+.++|.....
T Consensus 381 ~~~~L~~G~Y~l~EtkAP~G--Y~----l~~~~~~f~i~~~~~ 417 (444)
T 2x9x_A 381 EITGLLAGTYYLEETKQPAG--YA----LLTSRQKFEVTATSY 417 (444)
T ss_dssp EEEEECSEEEEEEEEECCTT--SC----CCCSCEEEEECTTTT
T ss_pred EECCCCCCEEEEEEEECCCC--CC----CCCCCEEEEEECCCC
T ss_conf 98877883499999538998--41----689768999908922
No 4
>2x9x_A RRGB, cell WALL surface anchor family protein; cell adhesion; 1.50A {Streptococcus pneumoniae} PDB: 2x9w_A 2x9y_A
Probab=1.00 E-value=1 Score=66.40 Aligned_cols=231 Identities=9% Similarity=0.063 Sum_probs=120.3
Q ss_pred ECEEEEEEECCCCCCCCC-----CCEEEEEECCCC---CEEEEEECCCCEEEECCC-CCEEEEEEEEE-CCCCCC----C
Q ss_conf 100899999149999985-----614999984865---403368508931996745-88109999740-342006----9
Q 003526 469 LSQISVRIYSKDDAGEPI-----PSVLLSLSGDDG---YRNNSVSWAGGSFHFDNL-FPGNFYLRPLL-KEYAFS----P 534 (813)
Q Consensus 469 l~~I~g~V~d~~~~g~Pl-----~Gv~vsLsg~~~---~r~~~~Td~~G~f~f~~L-~PG~Y~v~~~~-~ey~f~----P 534 (813)
.+.|.+.-.+.+ |.++ +|+.+.|...+. .....+||++|.+.|.+| +||.|+|+... .+|... +
T Consensus 159 ~G~i~i~K~d~~--g~~l~~~~g~~A~F~L~~~~~~~~v~~~~ttd~~G~~~~~~L~~~G~Y~v~Et~a~GY~l~~~~~~ 236 (444)
T 2x9x_A 159 NGDLTLTKTWVD--ATGAPIPAGAEATFDLVNAQAGKVVQTVTLTTDKNTVTVNGLDKNTEYKFVERSIKGYSADYQEIT 236 (444)
T ss_dssp TSCEEEEEEEEC--TTSCBCCCCSCEEEEEEETTTCCEEEEEEECTTCCEEEECSCCTTSCEEEEECCBTTBEEEECCCC
T ss_pred CCEEEEEEECCC--CCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCEEEECCCCCCCCEEEEEEECCCEEECCCCCC
T ss_conf 644999984589--987345567866999997899958877898689835998678889758999984386480454457
Q ss_pred CEEEEEECCCCE---EEEEEE-EEEEEEEEEEEEECCCCCCCCCCEEEEEECC--CCEEE-EEEECCCEEEEECCCCCCC
Q ss_conf 703899448863---899999-8776699999999489984476199998588--86034-4576286469976879998
Q 003526 535 PAQAIELGSGES---REVIFQ-ATRVAYSATGTITLLSGQPKDGVSVEARSES--KGYYE-ETVTDTSGSYRLRGLHPDT 607 (813)
Q Consensus 535 ~s~~V~V~~G~~---~~v~~~-~~r~~~sv~G~V~~~~G~p~~gv~V~a~~~~--~~~~~-~atTD~~G~frl~gL~PG~ 607 (813)
....|+|..... ..+... -....+++.=.-.+.+|.+++||..++.... +.... ...++.+|. ..+|.||.
T Consensus 237 ~~~~vtI~~~~~~~~~~~~~~~~~v~~g~v~~~KvD~~~~~L~GA~F~l~~~~~~g~~v~~~~~~~~~~~--~~~L~~g~ 314 (444)
T 2x9x_A 237 TAGEIAVKNWKDENPKPLDPTEPKVVTYGKKFVKVNDKDNRLAGAEFVIANADNAGQYLARKADKVSQEE--KQLVVTTK 314 (444)
T ss_dssp STTEEEEEEECCCCCCCBCCCCCEEECEEEEEEEECTTCCBCSCCEEEEESSSSSSCEEEECGGGSCHHH--HHHHHHHH
T ss_pred CCEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCC--CCCCCCCC
T ss_conf 7579999236656631014654258852079999889998728748999965779848754112244443--23456551
Q ss_pred EEEEEEEEECCCCCCCEECCCCCEEEEEECCCCCCCCEEEEEECCCEEEEEEEEECCCCCCCCCCE------EEEEEECC
Q ss_conf 399999950698885100137735999935864567317995237409999999826542456617------99999458
Q 003526 608 TYVIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGLDFLVFEQPEKTILSGHVEGNRIKELNSHL------LVEIKSAS 681 (813)
Q Consensus 608 ~Y~V~v~~~~~~~~~~~~~~~p~~~~V~V~~~dv~gv~f~~~~~~~~~~isg~V~~s~~~~~~~~l------~v~l~~~~ 681 (813)
|.+.= ++.+ +. ...++ ... . .++.. | ... ...+..+ ...+....
T Consensus 315 -y~~~E-Ap~g--Y~---~~t~e---------~~~--~-~~~~k---------i-d~~-~~~l~gA~~~~~~~~~~~~~~ 364 (444)
T 2x9x_A 315 -DALDR-AVAA--YN---ALTAQ---------QQT--Q-QEKEK---------V-DKA-QAAYNAAVIAANNAFEWVADK 364 (444)
T ss_dssp -HHHHH-HHHH--HH---TSCCC------------------CHH---------H-HHH-HHHHHHHHHHHCSSEEEESCT
T ss_pred -EEEEE-CCCC--CC---CCCCC---------CCC--C-CEEEE---------E-CCC-CCCCCCCEEECCCCEEECCCC
T ss_conf -14421-6332--12---33311---------111--0-01444---------1-344-432344211023422540455
Q ss_pred CCCCEEEEEEECCCCEEEEECCCCCEEEEEEEEECCCCCEEEEEEEEEEEEEECC
Q ss_conf 9973189996189833995108996299999860899740002334889999262
Q 003526 682 DTSKVESVISLPMSNFFQVKDLPKGKHLLQLRSSLPSSTHRFESEIIEVDLEKNA 736 (813)
Q Consensus 682 ~~~~v~~~~~l~~~~~F~~~~lp~G~Y~v~l~s~l~~~~~~y~~~~~~v~~~~~~ 736 (813)
....+.. +..+..|.|.|.+|+.|.|.|.=..- | .-|.-....+++.+.++.
T Consensus 365 ~~~~~~~-~~td~~G~~~~~~L~~G~Y~l~EtkA-P-~GY~l~~~~~~f~i~~~~ 416 (444)
T 2x9x_A 365 DNENVVK-LVSDAQGRFEITGLLAGTYYLEETKQ-P-AGYALLTSRQKFEVTATS 416 (444)
T ss_dssp TCTTBCC-EECCTTCEEEEEEECSEEEEEEEEEC-C-TTSCCCCSCEEEEECTTT
T ss_pred CCCCEEE-EEECCCCEEEECCCCCCEEEEEEEEC-C-CCCCCCCCCEEEEEECCC
T ss_conf 6673159-99899983998877883499999538-9-984168976899990892
No 5
>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein; HET: CIT; 2.30A {Yersinia pseudotuberculosis} SCOP: b.1.14.1 b.1.14.1 b.1.14.1 b.1.14.1 d.169.1.3
Probab=1.00 E-value=1 Score=65.25 Aligned_cols=17 Identities=12% Similarity=-0.035 Sum_probs=6.3
Q ss_pred EEEEEECCCCCCCCCCE
Q ss_conf 99999948998447619
Q 003526 560 ATGTITLLSGQPKDGVS 576 (813)
Q Consensus 560 v~G~V~~~~G~p~~gv~ 576 (813)
+.-+|+|.+|.|++|..
T Consensus 227 ltatv~D~~GNpv~g~~ 243 (492)
T 1cwv_A 227 LSFVPVDKNGHFISGMQ 243 (492)
T ss_dssp EEEECBCTTSCBCCSCC
T ss_pred EEEEEECCCCCCCCCCC
T ss_conf 99999989989946774
No 6
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold, C-terminal, A transthyretin-like domain, hydrolase; HET: NAG GEM; 2.70A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=63.87 Aligned_cols=82 Identities=15% Similarity=0.195 Sum_probs=48.5
Q ss_pred EECEEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCEEEEEECCCC--
Q ss_conf 210089999914999998561499998486540336850893199674588109999740342006970389944886--
Q 003526 468 KLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGE-- 545 (813)
Q Consensus 468 ~l~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~~~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~ey~f~P~s~~V~V~~G~-- 545 (813)
...+|+|.|+|.+ |+||+||.|++.|... ..++||++|.|.+ .|+||.|.|.+...+|. .+..+.|+|..++
T Consensus 335 ~~~gv~G~V~D~~--G~pi~gA~V~v~g~~~--~~~~Td~~G~y~~-~l~pG~Y~l~vs~~Gy~-~~~~~~v~v~~~~~~ 408 (435)
T 3mn8_A 335 AHIGIKGLVTDAS--GFPIADANVYVAGLEE--KPMRTSKRGEYWR-LLTPGLYSVHASAFGYQ-TSAPQQVRVTNDNQE 408 (435)
T ss_dssp GGSSEEEEEECSS--SCBCTTCEEEETTCTT--SCEECCTTCEEEE-CCCSEEEEEEEEBTTBC-CCCCEEEEECCCSSS
T ss_pred CCCEEEEEEECCC--CCCCCCEEEEEECCCC--CCEEECCCCEEEE-ECCCCCEEEEEEECCCC-CCEEEEEEEECCCCC
T ss_conf 3220688998789--9966764999925555--4438689973997-35898389999985614-023778999169864
Q ss_pred EEEEEEEEEE
Q ss_conf 3899999877
Q 003526 546 SREVIFQATR 555 (813)
Q Consensus 546 ~~~v~~~~~r 555 (813)
...++|.+..
T Consensus 409 ~~~~~~~L~~ 418 (435)
T 3mn8_A 409 ALRLDFKLAP 418 (435)
T ss_dssp CEECCEECCB
T ss_pred EEEEEEEEEE
T ss_conf 2689899863
No 7
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Probab=1.00 E-value=1 Score=63.39 Aligned_cols=81 Identities=17% Similarity=0.253 Sum_probs=56.2
Q ss_pred EEEECEEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCEEEEEECCCC
Q ss_conf 53210089999914999998561499998486540336850893199674588109999740342006970389944886
Q 003526 466 CQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGE 545 (813)
Q Consensus 466 ~~~l~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~~~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~ey~f~P~s~~V~V~~G~ 545 (813)
.+-.+.|.|.|+|.. +|+||+||.|.+.+.. ..++||.+|.|.+ .|+||.|.|++...+|. +..+.|.|..++
T Consensus 297 ~~v~~~i~G~V~D~~-~g~pi~~A~V~v~~~~---~~~~Td~~G~y~~-~l~~G~Y~l~vs~~Gy~--~~~~~v~v~~~~ 369 (380)
T 1h8l_A 297 KQVHRGIWGFVLDAT-DGRGILNATISVADIN---HPVTTYKDGDYWR-LLVQGTYKVTASARGYD--PVTKTVEVDSKG 369 (380)
T ss_dssp HGGGCEEEEEEEETT-TCSBCTTCEEEETTEE---EEEECCTTSEEEE-CCCSEEEEEEEECTTBC--CEEEEEEECSSC
T ss_pred HHCCCCCEEEEEECC-CCCCCCCEEEEEECCC---CEEEECCCEEEEE-ECCCCCEEEEEEECCCC--CEEEEEEECCCC
T ss_conf 422444237998689-9971576499996376---0128789878999-63798689999976820--168899984797
Q ss_pred EEEEEEEE
Q ss_conf 38999998
Q 003526 546 SREVIFQA 553 (813)
Q Consensus 546 ~~~v~~~~ 553 (813)
...++|.+
T Consensus 370 ~~~~~~~L 377 (380)
T 1h8l_A 370 GVQVNFTL 377 (380)
T ss_dssp EEECCEEE
T ss_pred EEEEEEEE
T ss_conf 58987895
No 8
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease, zinc, lipoprotein, hydrolase, structural proteomics in europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP: b.3.2.1 c.56.5.1
Probab=1.00 E-value=1 Score=63.28 Aligned_cols=71 Identities=13% Similarity=0.324 Sum_probs=35.4
Q ss_pred ECEEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCEEEEEECCCC
Q ss_conf 10089999914999998561499998486540336850893199674588109999740342006970389944886
Q 003526 469 LSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGE 545 (813)
Q Consensus 469 l~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~~~r~~~~Td~~G~f~f~~L~PG~Y~v~~~~~ey~f~P~s~~V~V~~G~ 545 (813)
..+|+|.|.|.+ |+||+||.|++.+.... ..++||.+|.|.+ .|+||.|.|.+...+|. +..+.|.|..++
T Consensus 295 ~~~I~G~V~D~~--g~pi~gA~V~v~g~~~~-~~~~Td~~G~y~~-~l~~G~Y~l~vs~~Gy~--~~~~~v~v~~~~ 365 (426)
T 1uwy_A 295 HLGVKGQVFDQN--GNPLPNVIVEVQDRKHI-CPYRTNKYGEYYL-LLLPGSYIINVTVPGHD--PHITKVIIPEKS 365 (426)
T ss_dssp GCSEEEEEECTT--SCBCCSCEEEETTCCCS-SCCBCCTTCEEEE-CCCSEEEEEEEECSSSC--CEEEEEEECSSC
T ss_pred CCEEEEEEECCC--CCCCCCEEEEEEECCCC-CEEEECCCCEEEE-CCCCEEEEEEEEECCCC--CEEEEEEEECCC
T ss_conf 221689998899--98617549999704555-2267689987996-33885689999975866--578899990797
No 9
>2y1v_A RRGB, cell WALL surface anchor family protein; structural protein, major pilin, pilus assembly; 2.39A {Streptococcus pneumoniae} PDB: 3rpk_A
Probab=1.00 E-value=1 Score=62.45 Aligned_cols=206 Identities=13% Similarity=0.144 Sum_probs=113.1
Q ss_pred ECCCCC--EEEEEEECCCCHHHHCCCCCEEEEEEECCCCCEEECCCCCCCEEEEEE-ECCCEEEEEC---CCCCE--EE-
Q ss_conf 089887--099999357401221024750356684799518814579995399999-5898266412---78520--55-
Q 003526 396 SPPLSG--VNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEA-SKPGYYLRQV---GPNSF--SC- 466 (813)
Q Consensus 396 ~ppi~g--a~V~l~~~~~~~~~~~~~~~~~~~t~Td~~G~y~~~~L~~~g~Y~i~A-~k~gy~~~~~---~~~~f--~~- 466 (813)
..+|+| |.+.|...+... .....+.++.+|.+.|.+|.+.|.|.+.= +..||.+... .++.| ..
T Consensus 329 ~~~L~G~~A~F~l~~~~~~~-------~~~~~~~~~~~~~~~f~~L~~~g~Y~~~Et~a~GY~l~~~~~~~~~~vti~n~ 401 (605)
T 2y1v_A 329 APIPAGAEATFDLVNAQTGK-------VVQTVTLTTDKNTVTVNGLDKNTEYKFVERSIKGYSADYQEITTAGEIAVKNW 401 (605)
T ss_dssp CBCCCCSCEEEEEEETTTCC-------EEEEEEECTTCCEEEECSCCTTSCEEEEECCBTTBEEEECCCCSTTEEEEEEE
T ss_pred CCCCCCCEEEEEEEECCCCE-------EEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCEECCCCCCCCCEEEEEEEC
T ss_conf 24567844899999778970-------88755226883379982478886289999603762415532245369999624
Q ss_pred --------------EEECEEEEEEECCCCCCCCCCCEEEEEECCC--C-C---EEEEEECCCCEEEECCCCCEEEEEEEE
Q ss_conf --------------3210089999914999998561499998486--5-4---033685089319967458810999974
Q 003526 467 --------------QKLSQISVRIYSKDDAGEPIPSVLLSLSGDD--G-Y---RNNSVSWAGGSFHFDNLFPGNFYLRPL 526 (813)
Q Consensus 467 --------------~~l~~I~g~V~d~~~~g~Pl~Gv~vsLsg~~--~-~---r~~~~Td~~G~f~f~~L~PG~Y~v~~~ 526 (813)
..-+++.+.-+|.+ +.+|+||.+.|...+ + + +...+|+++|. .|+||.|.+..-
T Consensus 402 ~~~~p~~~~~~~~~v~tg~v~~~KvD~~--~~~L~GA~F~l~~~~~~g~~~~~k~~~~t~~~g~----~l~~g~y~~~ea 475 (605)
T 2y1v_A 402 KDENPKPLDPTEPKVVTYGKKFVKVNDK--DNRLAGAEFVIANADNAGQYLARKADKVSQEEKQ----LVVTTKDALDRA 475 (605)
T ss_dssp ECCCCCCBCCCCCEEECEEEEEEEECTT--CCBCCCCEEEEESSSSSSCEEECCGGGSCHHHHH----HHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCEEEEEEEEEEEECCC--CCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCC----CCCCCCCEECCC
T ss_conf 5567653456763377513899998899--9880897899996678983887403443333433----456431110004
Q ss_pred ECCCCCCCCEEEEEECCCCEEEEEEEEEEEEEEEEEEEECCCCCCC------CCCEEEEEECC-CCEEEEEEECCCEEEE
Q ss_conf 0342006970389944886389999987766999999994899844------76199998588-8603445762864699
Q 003526 527 LKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPK------DGVSVEARSES-KGYYEETVTDTSGSYR 599 (813)
Q Consensus 527 ~~ey~f~P~s~~V~V~~G~~~~v~~~~~r~~~sv~G~V~~~~G~p~------~gv~V~a~~~~-~~~~~~atTD~~G~fr 599 (813)
..+|.-.- ..+...+.+. .| +...... ++......... .......+||++|.|.
T Consensus 476 ~~gY~~~~--------~~~~~~~~~~----------kv-d~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~t~~~G~~~ 536 (605)
T 2y1v_A 476 VAAYNALT--------AQQQTQQEKE----------KV-DKAQAAYNAAVIAANNAFEWVADKDNENVVKLVSDAQGRFE 536 (605)
T ss_dssp HHHHHTSC--------TTTCCHHHHH----------HH-HHHHHHHHHHHHHHCSSCEEESCTTSTTBCCEECCTTCEEE
T ss_pred CCCCCCCC--------CCCCCCEEEE----------EE-CCCCCCCCCHHHCCCCCEEEECCCCCCCCEEEEECCCCEEE
T ss_conf 21102234--------2112100012----------20-21000111001103540477226666630267627888799
Q ss_pred ECCCCCCCEEEEEEEEECCCCCCCEECCCCCEEEEEECCC
Q ss_conf 7687999839999995069888510013773599993586
Q 003526 600 LRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSG 639 (813)
Q Consensus 600 l~gL~PG~~Y~V~v~~~~~~~~~~~~~~~p~~~~V~V~~~ 639 (813)
|.+|.+|.||.++..+|++ .. -....+.++|...
T Consensus 537 ~~~L~~G~Y~l~EtkAP~G--Y~----l~~~~~~f~i~~~ 570 (605)
T 2y1v_A 537 ITGLLAGTYYLEETKQPAG--YA----LLTSRQKFEVTAT 570 (605)
T ss_dssp EEEECSEEEEEEEEECCTT--SC----CCSSCEEEEECTT
T ss_pred ECCCCCCEEEEEEEECCCC--CC----CCCCCEEEEECCC
T ss_conf 8877882599999668998--52----6897589999478
No 10
>2y1v_A RRGB, cell WALL surface anchor family protein; structural protein, major pilin, pilus assembly; 2.39A {Streptococcus pneumoniae} PDB: 3rpk_A
Probab=1.00 E-value=1 Score=61.29 Aligned_cols=233 Identities=9% Similarity=0.067 Sum_probs=117.4
Q ss_pred ECEEEEEEECCCCCCC---CCCC--EEEEEECCCC---CEEEEEECCCCEEEECCC-CCEEEEEEEEE-CCCCCC----C
Q ss_conf 1008999991499999---8561--4999984865---403368508931996745-88109999740-342006----9
Q 003526 469 LSQISVRIYSKDDAGE---PIPS--VLLSLSGDDG---YRNNSVSWAGGSFHFDNL-FPGNFYLRPLL-KEYAFS----P 534 (813)
Q Consensus 469 l~~I~g~V~d~~~~g~---Pl~G--v~vsLsg~~~---~r~~~~Td~~G~f~f~~L-~PG~Y~v~~~~-~ey~f~----P 534 (813)
.+.|.+.-.|.+ |. +|+| |.+.|...++ ....+.++.+|.+.|.+| +||.|+|+... .+|... +
T Consensus 314 ~G~v~l~K~d~~--g~~~~~L~G~~A~F~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~~g~Y~~~Et~a~GY~l~~~~~~ 391 (605)
T 2y1v_A 314 NGDLTLTKTWVD--ATGAPIPAGAEATFDLVNAQTGKVVQTVTLTTDKNTVTVNGLDKNTEYKFVERSIKGYSADYQEIT 391 (605)
T ss_dssp TSCEEEEEEEEE--TTSCBCCCCSCEEEEEEETTTCCEEEEEEECTTCCEEEECSCCTTSCEEEEECCBTTBEEEECCCC
T ss_pred CCEEEEEEECCC--CCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCEECCCCCCC
T ss_conf 652899876488--870245678448999997789708875522688337998247888628999960376241553224
Q ss_pred CEEEEEECCCCE---EEEEE-EEEEEEEEEEEEEECCCCCCCCCCEEEEEECC--CCEE---EEEEECCCEEEEECCCCC
Q ss_conf 703899448863---89999-98776699999999489984476199998588--8603---445762864699768799
Q 003526 535 PAQAIELGSGES---REVIF-QATRVAYSATGTITLLSGQPKDGVSVEARSES--KGYY---EETVTDTSGSYRLRGLHP 605 (813)
Q Consensus 535 ~s~~V~V~~G~~---~~v~~-~~~r~~~sv~G~V~~~~G~p~~gv~V~a~~~~--~~~~---~~atTD~~G~frl~gL~P 605 (813)
....|+|..... ..+.. .-....+++.=.-.+.++.+++||.+.+.... +... ...+||++|. +|.|
T Consensus 392 ~~~~vti~n~~~~~p~~~~~~~~~v~tg~v~~~KvD~~~~~L~GA~F~l~~~~~~g~~~~~k~~~~t~~~g~----~l~~ 467 (605)
T 2y1v_A 392 TAGEIAVKNWKDENPKPLDPTEPKVVTYGKKFVKVNDKDNRLAGAEFVIANADNAGQYLARKADKVSQEEKQ----LVVT 467 (605)
T ss_dssp STTEEEEEEEECCCCCCBCCCCCEEECEEEEEEEECTTCCBCCCCEEEEESSSSSSCEEECCGGGSCHHHHH----HHHH
T ss_pred CCEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCC----CCCC
T ss_conf 536999962455676534567633775138999988999880897899996678983887403443333433----4564
Q ss_pred CCEEEEEEEEECCCCCCCEECCCCCEEEEEECCCCCCCCEEEEEECCCEEEEEEEEECCCCCCC--CCCEEEEEEECCCC
Q ss_conf 9839999995069888510013773599993586456731799523740999999982654245--66179999945899
Q 003526 606 DTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGLDFLVFEQPEKTILSGHVEGNRIKEL--NSHLLVEIKSASDT 683 (813)
Q Consensus 606 G~~Y~V~v~~~~~~~~~~~~~~~p~~~~V~V~~~dv~gv~f~~~~~~~~~~isg~V~~s~~~~~--~~~l~v~l~~~~~~ 683 (813)
| .|.+.- ++.+ +. -..++ .-.-+.+..+.... ..++.. ......++......
T Consensus 468 g-~y~~~e-a~~g--Y~---~~~~~---------~~~~~~~~kvd~~~----------~~~~~a~~~a~~~~~~~~~~~~ 521 (605)
T 2y1v_A 468 T-KDALDR-AVAA--YN---ALTAQ---------QQTQQEKEKVDKAQ----------AAYNAAVIAANNAFEWVADKDN 521 (605)
T ss_dssp H-HHHHHH-HHHH--HH---TSCTT---------TCCHHHHHHHHHHH----------HHHHHHHHHHCSSCEEESCTTS
T ss_pred C-CCEECC-CCCC--CC---CCCCC---------CCCCEEEEEECCCC----------CCCCCHHHCCCCCEEEECCCCC
T ss_conf 3-111000-4211--02---23421---------12100012202100----------0111001103540477226666
Q ss_pred CCEEEEEEECCCCEEEEECCCCCEEEEEEEEECCCCCEEEEEEEEEEEEEECC
Q ss_conf 73189996189833995108996299999860899740002334889999262
Q 003526 684 SKVESVISLPMSNFFQVKDLPKGKHLLQLRSSLPSSTHRFESEIIEVDLEKNA 736 (813)
Q Consensus 684 ~~v~~~~~l~~~~~F~~~~lp~G~Y~v~l~s~l~~~~~~y~~~~~~v~~~~~~ 736 (813)
..+.. +..+..|.|.|.+|+.|.|.|.=.-- | .-|.-....+++.+.++.
T Consensus 522 ~~~~~-~~t~~~G~~~~~~L~~G~Y~l~EtkA-P-~GY~l~~~~~~f~i~~~~ 571 (605)
T 2y1v_A 522 ENVVK-LVSDAQGRFEITGLLAGTYYLEETKQ-P-AGYALLTSRQKFEVTATS 571 (605)
T ss_dssp TTBCC-EECCTTCEEEEEEECSEEEEEEEEEC-C-TTSCCCSSCEEEEECTTT
T ss_pred CCCEE-EEECCCCEEEECCCCCCEEEEEEEEC-C-CCCCCCCCCEEEEECCCC
T ss_conf 63026-76278887998877882599999668-9-985268975899994783
Done!