Query 003528
Match_columns 813
No_of_seqs 533 out of 1840
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 01:08:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003528.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003528hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2203 GTP-binding protein [G 100.0 4E-165 8E-170 1345.1 56.1 740 7-762 4-749 (772)
2 PF05879 RHD3: Root hair defec 100.0 2E-144 4E-149 1287.4 61.2 702 46-766 1-721 (742)
3 COG1126 GlnQ ABC-type polar am 100.0 3.7E-34 8.1E-39 289.1 13.3 180 8-205 1-227 (240)
4 COG1120 FepC ABC-type cobalami 100.0 8.3E-33 1.8E-37 290.7 13.2 197 8-220 1-245 (258)
5 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3E-31 6.5E-36 277.7 15.3 188 7-213 2-237 (254)
6 COG1127 Ttg2A ABC-type transpo 100.0 1.5E-30 3.2E-35 266.7 13.5 190 7-213 6-247 (263)
7 COG1135 AbcC ABC-type metal io 100.0 7.4E-31 1.6E-35 277.1 11.5 184 9-205 1-233 (339)
8 COG1125 OpuBA ABC-type proline 100.0 1.5E-30 3.3E-35 267.7 10.3 180 9-204 1-226 (309)
9 COG3638 ABC-type phosphate/pho 100.0 6.7E-30 1.4E-34 261.2 12.2 189 8-213 2-246 (258)
10 COG1116 TauB ABC-type nitrate/ 100.0 6.2E-30 1.3E-34 265.0 11.9 166 8-188 2-206 (248)
11 COG1124 DppF ABC-type dipeptid 100.0 3.9E-29 8.4E-34 257.2 11.9 185 7-204 1-232 (252)
12 COG1122 CbiO ABC-type cobalt t 100.0 3.7E-29 8E-34 262.0 10.8 182 8-204 2-229 (235)
13 COG3842 PotA ABC-type spermidi 100.0 7.6E-29 1.6E-33 271.2 13.2 181 7-204 3-227 (352)
14 COG3839 MalK ABC-type sugar tr 100.0 1.3E-28 2.9E-33 268.0 11.5 181 7-204 1-224 (338)
15 COG4555 NatA ABC-type Na+ tran 100.0 7.4E-29 1.6E-33 247.7 8.1 178 9-202 1-221 (245)
16 COG1136 SalX ABC-type antimicr 100.0 3.8E-28 8.1E-33 251.0 13.0 170 9-192 1-220 (226)
17 COG1117 PstB ABC-type phosphat 100.0 1.7E-28 3.7E-33 247.2 9.9 181 7-205 5-239 (253)
18 COG2884 FtsE Predicted ATPase 100.0 1.9E-28 4.2E-33 242.9 10.1 173 9-197 1-220 (223)
19 COG1131 CcmA ABC-type multidru 99.9 9.3E-28 2E-32 260.0 13.3 179 7-201 2-224 (293)
20 PRK11650 ugpC glycerol-3-phosp 99.9 1E-27 2.2E-32 266.3 13.6 181 8-205 2-226 (356)
21 PRK13537 nodulation ABC transp 99.9 1.2E-27 2.5E-32 260.9 13.4 179 7-203 5-227 (306)
22 COG1118 CysA ABC-type sulfate/ 99.9 5.5E-28 1.2E-32 254.9 9.9 181 8-205 1-229 (345)
23 COG4559 ABC-type hemin transpo 99.9 1.3E-27 2.7E-32 240.6 11.5 192 9-217 1-244 (259)
24 COG4604 CeuD ABC-type enteroch 99.9 2.2E-28 4.8E-33 243.4 5.9 191 9-216 1-238 (252)
25 PRK11432 fbpC ferric transport 99.9 2E-27 4.3E-32 263.4 13.8 181 7-204 4-227 (351)
26 TIGR02314 ABC_MetN D-methionin 99.9 1.9E-27 4.2E-32 262.5 13.6 183 9-204 1-231 (343)
27 PRK13536 nodulation factor exp 99.9 2.2E-27 4.7E-32 262.1 13.8 179 7-203 39-261 (340)
28 TIGR03265 PhnT2 putative 2-ami 99.9 2.1E-27 4.6E-32 263.4 13.7 181 7-204 2-225 (353)
29 COG0411 LivG ABC-type branched 99.9 8.5E-28 1.9E-32 247.5 8.7 188 8-211 3-247 (250)
30 PRK09452 potA putrescine/sperm 99.9 3.5E-27 7.5E-32 263.4 13.7 183 5-204 10-235 (375)
31 PRK09536 btuD corrinoid ABC tr 99.9 4.2E-27 9E-32 264.5 13.7 189 8-214 2-239 (402)
32 cd03296 ABC_CysA_sulfate_impor 99.9 6.6E-27 1.4E-31 245.6 13.3 178 9-203 2-226 (239)
33 PRK11000 maltose/maltodextrin 99.9 6.8E-27 1.5E-31 260.9 13.2 179 9-204 3-224 (369)
34 TIGR03258 PhnT 2-aminoethylpho 99.9 8.2E-27 1.8E-31 259.4 13.7 181 7-204 3-229 (362)
35 PRK11607 potG putrescine trans 99.9 8.5E-27 1.8E-31 260.5 13.8 182 6-204 16-240 (377)
36 PRK10851 sulfate/thiosulfate t 99.9 8.5E-27 1.8E-31 258.6 13.4 179 9-204 2-227 (353)
37 COG4598 HisP ABC-type histidin 99.9 2.4E-27 5.2E-32 232.7 7.6 182 7-206 4-244 (256)
38 cd03218 ABC_YhbG The ABC trans 99.9 1.1E-26 2.4E-31 242.4 12.9 177 10-204 1-223 (232)
39 cd03265 ABC_DrrA DrrA is the A 99.9 1.6E-26 3.5E-31 239.6 13.2 173 10-199 1-217 (220)
40 PRK13647 cbiO cobalt transport 99.9 1.5E-26 3.2E-31 248.3 13.1 177 7-199 2-223 (274)
41 cd03261 ABC_Org_Solvent_Resist 99.9 1.8E-26 3.9E-31 241.6 12.9 176 10-202 1-225 (235)
42 TIGR01288 nodI ATP-binding ABC 99.9 1.7E-26 3.8E-31 251.2 13.0 177 8-202 3-223 (303)
43 PRK11153 metN DL-methionine tr 99.9 1.9E-26 4.1E-31 255.1 13.3 181 9-203 1-230 (343)
44 cd03259 ABC_Carb_Solutes_like 99.9 1.8E-26 3.8E-31 238.0 12.1 170 10-196 1-213 (213)
45 cd03258 ABC_MetN_methionine_tr 99.9 2.1E-26 4.6E-31 240.6 12.8 180 9-202 1-229 (233)
46 PRK09544 znuC high-affinity zi 99.9 4.5E-26 9.7E-31 241.7 14.8 188 8-212 3-218 (251)
47 PRK13651 cobalt transporter AT 99.9 3E-26 6.5E-31 249.6 13.7 183 9-205 2-256 (305)
48 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 3.5E-26 7.5E-31 239.7 13.7 176 9-202 1-220 (236)
49 TIGR02315 ABC_phnC phosphonate 99.9 3.2E-26 6.9E-31 240.5 13.4 176 9-201 1-233 (243)
50 PRK15079 oligopeptide ABC tran 99.9 2.7E-26 5.8E-31 252.6 13.3 186 6-204 5-252 (331)
51 PRK11614 livF leucine/isoleuci 99.9 3.5E-26 7.6E-31 239.7 13.5 180 8-205 4-228 (237)
52 PRK13643 cbiO cobalt transport 99.9 2.3E-26 5E-31 248.6 12.4 182 9-204 1-234 (288)
53 COG0410 LivF ABC-type branched 99.9 4.6E-26 9.9E-31 233.1 13.8 187 8-210 2-233 (237)
54 PRK10895 lipopolysaccharide AB 99.9 3.1E-26 6.8E-31 240.6 12.9 184 8-209 2-232 (241)
55 PRK13650 cbiO cobalt transport 99.9 3.8E-26 8.2E-31 245.8 13.8 184 7-204 2-230 (279)
56 COG4175 ProV ABC-type proline/ 99.9 1.2E-26 2.6E-31 245.0 9.7 185 7-204 2-255 (386)
57 PRK11022 dppD dipeptide transp 99.9 4.2E-26 9.1E-31 250.7 14.2 186 9-203 3-243 (326)
58 PRK11308 dppF dipeptide transp 99.9 3.8E-26 8.3E-31 251.0 13.6 184 8-204 4-245 (327)
59 PRK13646 cbiO cobalt transport 99.9 2.9E-26 6.3E-31 247.5 12.1 183 9-205 2-237 (286)
60 cd03301 ABC_MalK_N The N-termi 99.9 4.1E-26 8.9E-31 235.1 12.6 170 10-196 1-213 (213)
61 TIGR03522 GldA_ABC_ATP gliding 99.9 4.8E-26 1E-30 247.6 13.7 176 9-203 2-221 (301)
62 PRK11248 tauB taurine transpor 99.9 6.4E-26 1.4E-30 241.0 14.3 175 9-199 1-216 (255)
63 TIGR00960 3a0501s02 Type II (G 99.9 4.9E-26 1.1E-30 235.2 13.0 168 9-192 1-216 (216)
64 PRK13652 cbiO cobalt transport 99.9 5.7E-26 1.2E-30 244.1 13.9 181 8-203 2-227 (277)
65 PRK11247 ssuB aliphatic sulfon 99.9 8.1E-26 1.8E-30 240.6 14.8 176 7-199 10-219 (257)
66 PRK13638 cbiO cobalt transport 99.9 3.7E-26 8E-31 244.6 12.1 179 9-204 1-226 (271)
67 PRK13637 cbiO cobalt transport 99.9 5E-26 1.1E-30 245.8 13.2 183 9-204 2-235 (287)
68 PRK11231 fecE iron-dicitrate t 99.9 5.3E-26 1.1E-30 241.1 13.1 186 9-212 2-236 (255)
69 PRK11300 livG leucine/isoleuci 99.9 5.4E-26 1.2E-30 240.7 13.1 179 9-204 5-244 (255)
70 PRK14250 phosphate ABC transpo 99.9 9.5E-26 2E-30 237.4 14.9 179 7-203 1-221 (241)
71 cd03266 ABC_NatA_sodium_export 99.9 6.8E-26 1.5E-30 234.3 13.4 172 9-195 1-217 (218)
72 PRK13634 cbiO cobalt transport 99.9 4.9E-26 1.1E-30 246.2 12.7 183 9-205 2-237 (290)
73 COG1137 YhbG ABC-type (unclass 99.9 3.4E-27 7.4E-32 235.6 3.4 189 7-212 2-237 (243)
74 COG3840 ThiQ ABC-type thiamine 99.9 4.4E-26 9.6E-31 224.6 11.1 178 9-205 1-221 (231)
75 cd03293 ABC_NrtD_SsuB_transpor 99.9 7E-26 1.5E-30 234.8 13.2 176 10-198 1-218 (220)
76 TIGR03410 urea_trans_UrtE urea 99.9 7.2E-26 1.6E-30 236.1 12.9 175 10-201 1-219 (230)
77 PRK15093 antimicrobial peptide 99.9 1.1E-25 2.4E-30 247.7 14.9 187 8-203 2-248 (330)
78 cd03256 ABC_PhnC_transporter A 99.9 1E-25 2.2E-30 236.3 13.7 176 10-201 1-232 (241)
79 PRK13633 cobalt transporter AT 99.9 8.1E-26 1.8E-30 243.3 13.3 184 7-204 2-234 (280)
80 PRK11831 putative ABC transpor 99.9 9E-26 2E-30 241.5 13.6 179 7-202 5-232 (269)
81 PRK13636 cbiO cobalt transport 99.9 6.5E-26 1.4E-30 244.4 12.5 181 9-204 5-232 (283)
82 PRK11264 putative amino-acid A 99.9 1.1E-25 2.4E-30 237.6 13.8 176 9-202 3-232 (250)
83 cd03219 ABC_Mj1267_LivG_branch 99.9 8.1E-26 1.7E-30 236.5 12.6 175 10-202 1-231 (236)
84 cd03224 ABC_TM1139_LivF_branch 99.9 9.1E-26 2E-30 233.8 12.5 174 10-201 1-219 (222)
85 PRK13548 hmuV hemin importer A 99.9 9.9E-26 2.1E-30 239.8 12.9 178 9-203 2-230 (258)
86 cd03269 ABC_putative_ATPase Th 99.9 1.2E-25 2.6E-30 231.3 13.0 168 10-195 1-209 (210)
87 TIGR03411 urea_trans_UrtD urea 99.9 8.5E-26 1.8E-30 237.4 12.0 176 9-203 2-231 (242)
88 COG0444 DppD ABC-type dipeptid 99.9 1E-25 2.2E-30 241.0 12.6 186 10-204 2-244 (316)
89 PRK10575 iron-hydroxamate tran 99.9 1.8E-25 3.9E-30 238.5 14.5 187 8-211 10-245 (265)
90 PRK10070 glycine betaine trans 99.9 9.9E-26 2.2E-30 253.2 13.1 183 8-203 3-254 (400)
91 PRK09493 glnQ glutamine ABC tr 99.9 1.5E-25 3.3E-30 235.3 13.7 177 9-203 1-225 (240)
92 PRK09984 phosphonate/organopho 99.9 1.6E-25 3.5E-30 238.4 13.8 177 7-200 2-239 (262)
93 PRK13635 cbiO cobalt transport 99.9 1.3E-25 2.7E-30 241.8 13.2 182 8-204 4-230 (279)
94 COG4152 ABC-type uncharacteriz 99.9 4E-26 8.7E-31 233.9 8.5 178 8-202 1-218 (300)
95 PRK10253 iron-enterobactin tra 99.9 1.4E-25 3E-30 239.4 12.9 179 8-203 6-233 (265)
96 cd03268 ABC_BcrA_bacitracin_re 99.9 1.6E-25 3.4E-30 230.1 12.8 169 10-196 1-208 (208)
97 PRK11629 lolD lipoprotein tran 99.9 2.8E-25 6E-30 232.4 14.4 175 8-197 4-228 (233)
98 PRK13644 cbiO cobalt transport 99.9 2.1E-25 4.6E-30 239.4 13.8 180 9-205 1-226 (274)
99 PRK13631 cbiO cobalt transport 99.9 2.2E-25 4.8E-30 244.4 14.2 185 7-206 19-268 (320)
100 cd03263 ABC_subfamily_A The AB 99.9 2E-25 4.3E-30 231.1 13.0 174 10-200 1-218 (220)
101 PRK13641 cbiO cobalt transport 99.9 1.6E-25 3.4E-30 241.9 12.5 180 9-203 2-234 (287)
102 PRK09473 oppD oligopeptide tra 99.9 1.9E-25 4.2E-30 245.8 13.2 187 5-204 8-252 (330)
103 TIGR01186 proV glycine betaine 99.9 1E-25 2.2E-30 250.3 10.9 172 17-204 1-220 (363)
104 cd03226 ABC_cobalt_CbiO_domain 99.9 1.9E-25 4.1E-30 229.1 12.0 167 11-193 1-205 (205)
105 PRK13648 cbiO cobalt transport 99.9 4.2E-25 9.1E-30 236.2 15.1 182 8-204 6-232 (269)
106 PRK11124 artP arginine transpo 99.9 3.6E-25 7.7E-30 232.8 13.9 175 9-201 2-228 (242)
107 TIGR02769 nickel_nikE nickel i 99.9 2.8E-25 6E-30 237.1 13.1 181 9-202 2-239 (265)
108 COG1123 ATPase components of v 99.9 2.3E-25 5E-30 253.5 12.9 184 7-203 278-519 (539)
109 PRK13642 cbiO cobalt transport 99.9 3.9E-25 8.4E-30 237.6 13.8 182 8-203 3-229 (277)
110 TIGR02673 FtsE cell division A 99.9 2.9E-25 6.2E-30 229.0 12.3 166 9-191 1-214 (214)
111 COG4525 TauB ABC-type taurine 99.9 1.7E-25 3.7E-30 222.5 10.1 179 7-198 1-219 (259)
112 TIGR01188 drrA daunorubicin re 99.9 1.8E-25 3.9E-30 243.1 11.3 168 17-202 1-212 (302)
113 PRK11701 phnK phosphonate C-P 99.9 4.1E-25 8.8E-30 234.8 13.7 179 8-202 5-240 (258)
114 TIGR03005 ectoine_ehuA ectoine 99.9 3.6E-25 7.9E-30 234.2 13.3 177 10-203 1-236 (252)
115 cd03216 ABC_Carb_Monos_I This 99.9 4.5E-25 9.9E-30 219.1 13.1 159 10-194 1-162 (163)
116 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 2.9E-25 6.3E-30 229.5 12.1 168 10-192 1-218 (218)
117 cd03257 ABC_NikE_OppD_transpor 99.9 4E-25 8.6E-30 229.7 12.8 175 9-196 1-228 (228)
118 PRK10908 cell division protein 99.9 5E-25 1.1E-29 228.7 13.6 169 9-194 1-217 (222)
119 PRK14268 phosphate ABC transpo 99.9 5.4E-25 1.2E-29 234.0 14.1 183 7-203 10-242 (258)
120 PRK15112 antimicrobial peptide 99.9 3.1E-25 6.8E-30 237.1 12.3 182 8-202 3-238 (267)
121 TIGR03740 galliderm_ABC gallid 99.9 4.8E-25 1E-29 229.0 13.3 172 10-199 1-209 (223)
122 PRK13639 cbiO cobalt transport 99.9 3.8E-25 8.2E-30 237.5 12.9 179 9-204 1-227 (275)
123 PRK13632 cbiO cobalt transport 99.9 5.6E-25 1.2E-29 235.6 14.1 183 7-204 5-232 (271)
124 PRK10584 putative ABC transpor 99.9 6.6E-25 1.4E-29 228.6 14.2 173 7-194 4-226 (228)
125 cd03260 ABC_PstB_phosphate_tra 99.9 4.7E-25 1E-29 229.5 13.1 171 10-200 1-226 (227)
126 PRK15439 autoinducer 2 ABC tra 99.9 6.5E-25 1.4E-29 254.9 15.6 180 6-203 8-229 (510)
127 TIGR03873 F420-0_ABC_ATP propo 99.9 4.1E-25 8.9E-30 234.5 12.6 184 10-211 2-234 (256)
128 PRK10619 histidine/lysine/argi 99.9 7.6E-25 1.6E-29 232.6 14.7 176 9-202 5-240 (257)
129 COG1123 ATPase components of v 99.9 3.9E-25 8.4E-30 251.6 13.2 188 8-204 4-245 (539)
130 cd03264 ABC_drug_resistance_li 99.9 5.3E-25 1.1E-29 226.7 13.0 167 10-196 1-211 (211)
131 cd03295 ABC_OpuCA_Osmoprotecti 99.9 4.8E-25 1E-29 231.9 12.8 176 10-201 1-223 (242)
132 PRK13645 cbiO cobalt transport 99.9 4.4E-25 9.5E-30 238.6 12.8 184 8-204 5-241 (289)
133 cd03229 ABC_Class3 This class 99.9 7.6E-25 1.6E-29 220.2 13.3 158 10-191 1-178 (178)
134 PRK10771 thiQ thiamine transpo 99.9 8.4E-25 1.8E-29 228.7 14.1 182 9-209 1-225 (232)
135 PRK13649 cbiO cobalt transport 99.9 4.8E-25 1E-29 237.0 12.5 181 9-203 2-234 (280)
136 cd03292 ABC_FtsE_transporter F 99.9 5.7E-25 1.2E-29 226.6 12.4 166 10-192 1-214 (214)
137 PRK11144 modC molybdate transp 99.9 6.6E-25 1.4E-29 243.6 13.8 178 9-206 1-221 (352)
138 PRK13640 cbiO cobalt transport 99.9 6.7E-25 1.5E-29 236.5 13.2 181 9-204 5-233 (282)
139 cd03294 ABC_Pro_Gly_Bertaine T 99.9 2.8E-25 6.1E-30 237.7 10.1 175 11-202 26-249 (269)
140 cd03230 ABC_DR_subfamily_A Thi 99.9 7.8E-25 1.7E-29 219.2 12.6 156 10-192 1-173 (173)
141 PRK14273 phosphate ABC transpo 99.9 8.7E-25 1.9E-29 231.6 13.5 185 5-203 3-238 (254)
142 COG4608 AppF ABC-type oligopep 99.9 5.3E-25 1.2E-29 231.0 11.7 183 7-203 2-199 (268)
143 cd03214 ABC_Iron-Siderophores_ 99.9 7.1E-25 1.5E-29 220.8 11.9 168 11-195 1-179 (180)
144 PRK14247 phosphate ABC transpo 99.9 1.1E-24 2.3E-29 230.3 13.6 182 7-203 1-234 (250)
145 TIGR03415 ABC_choXWV_ATP choli 99.9 7.6E-25 1.7E-29 244.6 13.1 165 25-203 37-254 (382)
146 TIGR02211 LolD_lipo_ex lipopro 99.9 1.1E-24 2.5E-29 225.6 13.6 170 9-193 1-220 (221)
147 PRK10419 nikE nickel transport 99.9 9E-25 2E-29 233.7 12.9 182 8-202 2-240 (268)
148 COG1129 MglA ABC-type sugar tr 99.9 8.3E-25 1.8E-29 247.4 13.3 175 6-198 5-229 (500)
149 PRK14267 phosphate ABC transpo 99.9 1.2E-24 2.6E-29 230.2 13.7 182 7-203 2-237 (253)
150 PRK10247 putative ABC transpor 99.9 1.1E-24 2.4E-29 227.0 13.2 175 5-197 3-221 (225)
151 PRK15056 manganese/iron transp 99.9 1.5E-24 3.2E-29 232.5 14.3 182 9-207 6-234 (272)
152 PRK13547 hmuV hemin importer A 99.9 1.2E-24 2.6E-29 233.4 13.3 187 9-212 1-253 (272)
153 TIGR00972 3a0107s01c2 phosphat 99.9 1.2E-24 2.7E-29 229.5 13.2 175 9-203 1-232 (247)
154 cd03246 ABCC_Protease_Secretio 99.9 1.5E-24 3.3E-29 217.0 13.1 155 10-192 1-173 (173)
155 PRK10938 putative molybdenum t 99.9 9.5E-25 2.1E-29 252.3 13.3 178 9-203 3-224 (490)
156 cd03215 ABC_Carb_Monos_II This 99.9 8.6E-25 1.9E-29 220.6 11.3 159 8-192 3-182 (182)
157 TIGR01978 sufC FeS assembly AT 99.9 1.3E-24 2.8E-29 228.2 13.0 175 10-200 1-231 (243)
158 cd03298 ABC_ThiQ_thiamine_tran 99.9 1.3E-24 2.8E-29 223.7 12.6 167 10-195 1-210 (211)
159 PRK10418 nikD nickel transport 99.9 2.1E-24 4.5E-29 229.0 14.4 177 9-202 4-229 (254)
160 PRK10762 D-ribose transporter 99.9 1.6E-24 3.4E-29 251.2 14.6 177 7-201 2-228 (501)
161 PRK09700 D-allose transporter 99.9 9.6E-25 2.1E-29 253.5 12.9 177 8-202 4-233 (510)
162 PRK10261 glutathione transport 99.9 9.9E-25 2.1E-29 259.0 12.8 185 6-203 9-258 (623)
163 cd03262 ABC_HisP_GlnQ_permease 99.9 1.4E-24 2.9E-29 223.6 12.1 165 10-192 1-213 (213)
164 PRK14242 phosphate transporter 99.9 2E-24 4.4E-29 228.5 13.7 183 7-203 4-237 (253)
165 TIGR02323 CP_lyasePhnK phospho 99.9 2.4E-24 5.2E-29 228.0 14.2 179 8-202 2-237 (253)
166 cd03247 ABCC_cytochrome_bd The 99.9 2.9E-24 6.2E-29 215.9 14.1 160 10-195 1-177 (178)
167 cd03235 ABC_Metallic_Cations A 99.9 1.4E-24 3E-29 223.9 11.9 167 11-195 1-212 (213)
168 cd03213 ABCG_EPDR ABCG transpo 99.9 2.7E-24 5.9E-29 219.3 13.8 170 9-195 3-193 (194)
169 PRK14270 phosphate ABC transpo 99.9 2.1E-24 4.6E-29 228.3 13.4 182 7-204 2-236 (251)
170 PRK14274 phosphate ABC transpo 99.9 2.2E-24 4.7E-29 229.3 13.4 183 8-204 11-244 (259)
171 TIGR00968 3a0106s01 sulfate AB 99.9 2.2E-24 4.7E-29 226.5 13.0 177 10-203 1-220 (237)
172 cd03251 ABCC_MsbA MsbA is an e 99.9 3E-24 6.4E-29 224.4 14.0 174 10-202 1-224 (234)
173 cd03217 ABC_FeS_Assembly ABC-t 99.9 2.8E-24 6E-29 220.2 13.5 166 10-196 1-187 (200)
174 cd03267 ABC_NatA_like Similar 99.9 1.8E-24 3.8E-29 227.2 12.2 159 25-196 34-236 (236)
175 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 8E-25 1.7E-29 228.1 9.5 169 10-196 23-224 (224)
176 PRK13549 xylose transporter AT 99.9 2E-24 4.3E-29 250.7 13.8 177 8-202 4-231 (506)
177 PRK14269 phosphate ABC transpo 99.9 3E-24 6.5E-29 226.6 13.9 178 8-202 1-229 (246)
178 cd03300 ABC_PotA_N PotA is an 99.9 1.9E-24 4.2E-29 226.1 12.2 176 10-202 1-219 (232)
179 cd03225 ABC_cobalt_CbiO_domain 99.9 1.4E-24 3.1E-29 223.3 11.0 166 11-191 1-211 (211)
180 PRK14249 phosphate ABC transpo 99.9 3E-24 6.6E-29 227.1 13.6 177 8-204 3-236 (251)
181 TIGR03269 met_CoM_red_A2 methy 99.9 1.8E-24 3.9E-29 251.7 12.8 176 10-201 1-256 (520)
182 PRK14241 phosphate transporter 99.9 3.3E-24 7.1E-29 227.8 13.6 182 9-203 4-242 (258)
183 PRK14245 phosphate ABC transpo 99.9 3.2E-24 6.9E-29 226.7 13.2 181 8-204 2-235 (250)
184 PRK14239 phosphate transporter 99.9 4E-24 8.6E-29 226.0 13.8 181 8-204 4-237 (252)
185 PRK14253 phosphate ABC transpo 99.9 3.1E-24 6.7E-29 226.6 12.9 179 8-202 2-232 (249)
186 cd03254 ABCC_Glucan_exporter_l 99.9 4.5E-24 9.8E-29 222.3 13.9 173 9-201 2-224 (229)
187 PRK10744 pstB phosphate transp 99.9 3.5E-24 7.6E-29 228.0 13.2 181 7-203 11-244 (260)
188 cd03252 ABCC_Hemolysin The ABC 99.9 4.9E-24 1.1E-28 223.4 14.1 175 10-203 1-225 (237)
189 PRK14237 phosphate transporter 99.9 5E-24 1.1E-28 227.8 14.4 186 4-203 15-251 (267)
190 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 4.9E-24 1.1E-28 223.4 14.0 175 10-202 1-225 (238)
191 PRK14262 phosphate ABC transpo 99.9 4.4E-24 9.4E-29 225.6 13.7 181 8-202 2-233 (250)
192 cd03232 ABC_PDR_domain2 The pl 99.9 5.4E-24 1.2E-28 216.7 13.8 173 9-196 3-192 (192)
193 PRK14235 phosphate transporter 99.9 3.8E-24 8.3E-29 228.7 13.0 181 8-202 18-250 (267)
194 cd03228 ABCC_MRP_Like The MRP 99.9 5E-24 1.1E-28 212.9 12.9 153 10-191 1-171 (171)
195 PRK10261 glutathione transport 99.9 3E-24 6.5E-29 254.9 13.2 184 8-204 312-554 (623)
196 PRK14258 phosphate ABC transpo 99.9 4.7E-24 1E-28 227.2 13.4 179 8-204 6-246 (261)
197 PRK14251 phosphate ABC transpo 99.9 5.4E-24 1.2E-28 225.0 13.3 181 8-202 3-234 (251)
198 PRK14240 phosphate transporter 99.9 7.1E-24 1.5E-28 224.0 14.0 179 9-203 3-234 (250)
199 cd03299 ABC_ModC_like Archeal 99.9 5.2E-24 1.1E-28 223.3 12.8 175 10-202 1-218 (235)
200 PRK14259 phosphate ABC transpo 99.9 7.8E-24 1.7E-28 226.6 14.4 181 8-203 12-253 (269)
201 PRK14256 phosphate ABC transpo 99.9 6.3E-24 1.4E-28 224.8 13.3 182 8-204 3-237 (252)
202 PRK14272 phosphate ABC transpo 99.9 6.9E-24 1.5E-28 224.2 13.6 179 9-203 4-236 (252)
203 COG1119 ModF ABC-type molybden 99.9 1E-23 2.3E-28 217.4 14.2 175 7-197 29-256 (257)
204 TIGR02142 modC_ABC molybdenum 99.9 6.8E-24 1.5E-28 235.7 13.8 173 14-205 4-223 (354)
205 TIGR01277 thiQ thiamine ABC tr 99.9 6.8E-24 1.5E-28 219.1 12.8 169 10-197 1-212 (213)
206 PRK13545 tagH teichoic acids e 99.9 5.3E-24 1.2E-28 243.2 13.1 181 8-203 20-232 (549)
207 cd03223 ABCD_peroxisomal_ALDP 99.9 1.3E-23 2.8E-28 209.3 14.2 157 10-190 1-164 (166)
208 PRK14248 phosphate ABC transpo 99.9 9E-24 2E-28 225.8 14.0 182 8-203 20-252 (268)
209 CHL00131 ycf16 sulfate ABC tra 99.9 1.5E-23 3.3E-28 221.6 15.5 175 9-199 7-237 (252)
210 PRK15134 microcin C ABC transp 99.9 6.4E-24 1.4E-28 247.7 13.7 186 8-202 4-245 (529)
211 PRK13543 cytochrome c biogenes 99.9 1.6E-23 3.4E-28 216.7 15.0 162 8-186 10-210 (214)
212 cd03253 ABCC_ATM1_transporter 99.9 1.3E-23 2.8E-28 219.9 14.3 172 10-201 1-222 (236)
213 PRK13538 cytochrome c biogenes 99.9 1.2E-23 2.5E-28 216.0 13.7 160 9-186 1-201 (204)
214 COG3845 ABC-type uncharacteriz 99.9 6.4E-24 1.4E-28 236.2 12.5 174 7-198 2-224 (501)
215 COG4161 ArtP ABC-type arginine 99.9 6.5E-24 1.4E-28 205.4 10.7 173 9-199 2-226 (242)
216 PRK14265 phosphate ABC transpo 99.9 1.1E-23 2.5E-28 226.0 13.9 182 8-204 19-259 (274)
217 cd03369 ABCC_NFT1 Domain 2 of 99.9 2.2E-23 4.7E-28 214.2 15.1 171 8-197 5-206 (207)
218 cd03244 ABCC_MRP_domain2 Domai 99.9 2.1E-23 4.6E-28 216.1 15.0 169 10-197 3-220 (221)
219 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 1.4E-23 3E-28 204.5 12.6 141 10-191 1-144 (144)
220 PRK14254 phosphate ABC transpo 99.9 1.4E-23 3E-28 226.7 13.9 182 8-202 38-268 (285)
221 PRK13546 teichoic acids export 99.9 1.5E-23 3.2E-28 224.1 14.0 181 8-202 3-231 (264)
222 PRK14236 phosphate transporter 99.9 1.6E-23 3.5E-28 224.4 14.3 183 7-203 23-256 (272)
223 COG4181 Predicted ABC-type tra 99.9 7.9E-24 1.7E-28 206.8 10.7 173 9-195 6-227 (228)
224 PRK09580 sufC cysteine desulfu 99.9 1.6E-23 3.5E-28 220.7 13.9 175 9-199 1-231 (248)
225 cd03297 ABC_ModC_molybdenum_tr 99.9 1.1E-23 2.4E-28 217.4 12.4 166 10-196 2-214 (214)
226 cd03233 ABC_PDR_domain1 The pl 99.9 2E-23 4.4E-28 214.2 14.2 177 9-196 3-202 (202)
227 PRK14261 phosphate ABC transpo 99.9 1.8E-23 4E-28 221.4 14.3 181 6-202 3-236 (253)
228 TIGR03269 met_CoM_red_A2 methy 99.9 1.7E-23 3.7E-28 243.6 14.6 181 7-201 277-515 (520)
229 cd03245 ABCC_bacteriocin_expor 99.9 3.1E-23 6.7E-28 214.8 14.8 167 10-195 3-219 (220)
230 PRK14243 phosphate transporter 99.9 2.4E-23 5.2E-28 222.2 14.1 181 8-203 9-248 (264)
231 PRK14255 phosphate ABC transpo 99.9 2.5E-23 5.5E-28 220.0 14.2 184 7-204 3-237 (252)
232 COG1134 TagH ABC-type polysacc 99.9 1E-23 2.2E-28 217.7 10.7 181 8-202 2-235 (249)
233 PRK11288 araG L-arabinose tran 99.9 1.9E-23 4.1E-28 242.2 14.4 172 8-197 3-223 (501)
234 PRK13539 cytochrome c biogenes 99.9 3E-23 6.5E-28 213.5 14.2 153 9-178 2-192 (207)
235 cd03231 ABC_CcmA_heme_exporter 99.9 3.1E-23 6.7E-28 212.5 13.6 157 10-183 1-195 (201)
236 PRK14260 phosphate ABC transpo 99.9 2.9E-23 6.3E-28 220.8 13.7 181 7-203 5-243 (259)
237 PRK14246 phosphate ABC transpo 99.9 2.5E-23 5.4E-28 221.4 13.1 179 6-203 7-241 (257)
238 PRK14238 phosphate transporter 99.9 2.4E-23 5.2E-28 223.1 12.9 180 8-203 23-255 (271)
239 TIGR02633 xylG D-xylose ABC tr 99.9 2.7E-23 5.9E-28 240.7 14.2 174 9-200 1-227 (500)
240 PRK15134 microcin C ABC transp 99.9 1.4E-23 3E-28 244.9 11.4 183 7-203 273-515 (529)
241 PRK13549 xylose transporter AT 99.9 1.7E-23 3.6E-28 242.9 12.0 181 8-201 258-492 (506)
242 PRK14263 phosphate ABC transpo 99.9 3.5E-23 7.7E-28 220.7 13.5 183 6-203 5-245 (261)
243 PRK14271 phosphate ABC transpo 99.9 3.2E-23 6.9E-28 222.8 13.1 181 7-203 19-251 (276)
244 COG2274 SunT ABC-type bacterio 99.9 2.7E-23 5.9E-28 247.0 13.7 177 9-204 471-697 (709)
245 cd03288 ABCC_SUR2 The SUR doma 99.9 7.8E-23 1.7E-27 217.4 15.5 177 7-202 17-242 (257)
246 PRK14257 phosphate ABC transpo 99.9 4.3E-23 9.3E-28 227.1 13.9 187 8-206 79-316 (329)
247 cd03289 ABCC_CFTR2 The CFTR su 99.9 3.8E-23 8.3E-28 222.1 13.2 174 10-203 3-225 (275)
248 PRK14275 phosphate ABC transpo 99.9 4.6E-23 9.9E-28 222.7 13.6 181 7-203 37-270 (286)
249 TIGR01184 ntrCD nitrate transp 99.9 2.3E-23 4.9E-28 217.9 10.9 160 28-201 1-202 (230)
250 cd03250 ABCC_MRP_domain1 Domai 99.9 8E-23 1.7E-27 209.6 14.6 165 10-191 1-204 (204)
251 PRK14266 phosphate ABC transpo 99.9 5.1E-23 1.1E-27 217.5 13.5 180 7-202 1-233 (250)
252 TIGR03608 L_ocin_972_ABC putat 99.9 2.7E-23 5.7E-28 212.9 11.0 154 12-183 1-203 (206)
253 PRK14244 phosphate ABC transpo 99.9 7.1E-23 1.5E-27 216.6 14.1 180 10-203 6-237 (251)
254 PRK14264 phosphate ABC transpo 99.9 6.2E-23 1.3E-27 223.7 13.8 181 8-203 44-289 (305)
255 PRK15064 ABC transporter ATP-b 99.9 6.4E-23 1.4E-27 239.3 14.7 173 9-201 1-240 (530)
256 PRK14252 phosphate ABC transpo 99.9 7.1E-23 1.5E-27 218.6 13.5 181 8-202 15-248 (265)
257 PRK10982 galactose/methyl gala 99.9 4.2E-23 9.1E-28 238.7 12.6 172 12-201 1-221 (491)
258 TIGR02324 CP_lyasePhnL phospho 99.9 7.3E-23 1.6E-27 212.7 13.0 162 9-184 1-220 (224)
259 TIGR02982 heterocyst_DevA ABC 99.9 8.2E-23 1.8E-27 212.0 13.2 169 10-192 2-219 (220)
260 PRK11819 putative ABC transpor 99.9 8.3E-23 1.8E-27 239.7 14.6 173 8-201 5-248 (556)
261 cd03222 ABC_RNaseL_inhibitor T 99.9 8.7E-23 1.9E-27 205.7 12.5 141 13-188 4-147 (177)
262 cd03234 ABCG_White The White s 99.9 1.1E-22 2.4E-27 211.9 13.7 176 9-196 3-226 (226)
263 TIGR01189 ccmA heme ABC export 99.9 1E-22 2.2E-27 208.0 13.2 151 10-177 1-191 (198)
264 cd03248 ABCC_TAP TAP, the Tran 99.9 1.3E-22 2.8E-27 211.2 14.1 169 6-192 8-226 (226)
265 PRK03695 vitamin B12-transport 99.9 4.7E-23 1E-27 218.1 10.9 179 11-212 2-231 (248)
266 PRK15064 ABC transporter ATP-b 99.9 5.8E-23 1.2E-27 239.7 12.6 174 8-201 318-523 (530)
267 PRK09700 D-allose transporter 99.9 5.8E-23 1.3E-27 238.6 12.3 174 8-200 264-495 (510)
268 PRK13540 cytochrome c biogenes 99.9 1.2E-22 2.6E-27 207.9 13.2 153 9-178 1-192 (200)
269 TIGR02633 xylG D-xylose ABC tr 99.9 5.3E-23 1.2E-27 238.3 11.9 178 8-199 256-488 (500)
270 TIGR02770 nickel_nikD nickel i 99.9 4.3E-23 9.3E-28 215.7 9.5 163 27-202 1-214 (230)
271 PRK10790 putative multidrug tr 99.9 1.3E-22 2.8E-27 239.6 14.8 175 9-203 340-563 (592)
272 COG4988 CydD ABC-type transpor 99.9 8.1E-23 1.8E-27 232.0 12.0 179 9-205 318-545 (559)
273 COG4987 CydC ABC-type transpor 99.9 1.4E-22 3E-27 227.1 13.3 177 9-203 336-561 (573)
274 PRK10938 putative molybdenum t 99.9 1.9E-22 4.1E-27 233.2 14.9 175 7-196 258-485 (490)
275 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 1.7E-22 3.8E-27 242.5 15.1 176 9-203 451-673 (686)
276 PRK10636 putative ABC transpor 99.9 1.8E-22 4E-27 240.1 14.1 171 8-198 311-512 (638)
277 TIGR01257 rim_protein retinal- 99.9 1.7E-22 3.6E-27 259.3 14.4 178 8-201 1936-2157(2272)
278 PRK11176 lipid transporter ATP 99.9 2.4E-22 5.2E-27 236.8 14.7 177 9-204 341-568 (582)
279 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 2.1E-22 4.5E-27 242.7 14.3 174 9-203 477-700 (710)
280 PRK11147 ABC transporter ATPas 99.9 3.1E-22 6.8E-27 238.2 15.5 173 8-200 2-240 (635)
281 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 2.2E-22 4.8E-27 235.9 13.4 174 8-201 3-246 (552)
282 TIGR03375 type_I_sec_LssB type 99.9 3.1E-22 6.7E-27 240.7 14.9 175 9-202 463-687 (694)
283 PRK13541 cytochrome c biogenes 99.9 6.6E-22 1.4E-26 201.6 14.4 152 9-177 1-187 (195)
284 KOG0055 Multidrug/pheromone ex 99.9 2.6E-22 5.6E-27 243.2 13.0 179 9-205 350-578 (1228)
285 cd03291 ABCC_CFTR1 The CFTR su 99.9 1E-21 2.2E-26 211.8 16.3 173 7-202 37-246 (282)
286 COG4172 ABC-type uncharacteriz 99.9 2.2E-22 4.8E-27 218.1 11.0 184 8-205 275-518 (534)
287 PRK11174 cysteine/glutathione 99.9 4.5E-22 9.9E-27 234.8 14.7 174 9-203 349-572 (588)
288 TIGR01257 rim_protein retinal- 99.9 3.8E-22 8.2E-27 256.1 14.5 177 8-201 927-1147(2272)
289 PRK15177 Vi polysaccharide exp 99.9 2.6E-22 5.5E-27 207.9 10.5 159 27-200 2-189 (213)
290 COG4586 ABC-type uncharacteriz 99.9 1E-22 2.2E-27 211.9 7.1 181 8-201 2-244 (325)
291 TIGR01193 bacteriocin_ABC ABC- 99.9 5.5E-22 1.2E-26 239.0 14.6 174 9-203 473-697 (708)
292 TIGR01166 cbiO cobalt transpor 99.9 3.1E-22 6.8E-27 203.0 10.4 138 25-176 5-190 (190)
293 PRK11147 ABC transporter ATPas 99.9 8.6E-22 1.9E-26 234.5 15.1 169 8-195 318-519 (635)
294 PRK11160 cysteine/glutathione 99.9 9E-22 1.9E-26 231.8 15.1 177 9-204 338-563 (574)
295 PRK13657 cyclic beta-1,2-gluca 99.9 8.2E-22 1.8E-26 232.7 14.7 174 9-202 334-557 (588)
296 PRK10636 putative ABC transpor 99.9 1.1E-21 2.3E-26 233.6 15.4 171 9-199 1-232 (638)
297 TIGR01842 type_I_sec_PrtD type 99.9 1E-21 2.2E-26 229.9 14.8 175 9-201 316-540 (544)
298 TIGR00958 3a01208 Conjugate Tr 99.9 6.8E-22 1.5E-26 238.2 13.7 176 9-204 478-703 (711)
299 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 8.5E-22 1.8E-26 231.0 14.0 167 8-193 321-520 (552)
300 cd03290 ABCC_SUR1_N The SUR do 99.9 1.5E-21 3.3E-26 202.1 14.2 161 11-190 2-217 (218)
301 PRK11819 putative ABC transpor 99.9 7.6E-22 1.6E-26 231.6 13.5 167 8-193 323-522 (556)
302 PRK10789 putative multidrug tr 99.9 1.1E-21 2.4E-26 230.8 14.8 176 9-203 313-538 (569)
303 PRK13409 putative ATPase RIL; 99.9 8E-22 1.7E-26 232.2 13.4 171 8-197 339-536 (590)
304 TIGR02203 MsbA_lipidA lipid A 99.9 1E-21 2.2E-26 230.8 14.2 176 9-203 330-556 (571)
305 TIGR01192 chvA glucan exporter 99.9 1.2E-21 2.6E-26 231.2 14.7 175 9-203 334-558 (585)
306 PRK15439 autoinducer 2 ABC tra 99.9 5.2E-22 1.1E-26 230.7 11.4 173 8-202 267-491 (510)
307 cd03237 ABC_RNaseL_inhibitor_d 99.9 6.1E-22 1.3E-26 209.6 10.8 154 25-188 7-191 (246)
308 TIGR01846 type_I_sec_HlyB type 99.9 1.3E-21 2.9E-26 235.2 15.0 176 9-203 455-680 (694)
309 KOG0057 Mitochondrial Fe/S clu 99.9 1.6E-21 3.5E-26 218.7 14.5 174 9-203 351-574 (591)
310 PRK10535 macrolide transporter 99.9 2.4E-21 5.3E-26 231.0 16.9 180 7-202 2-231 (648)
311 TIGR02204 MsbA_rel ABC transpo 99.9 1.3E-21 2.8E-26 230.2 14.4 179 9-203 337-563 (576)
312 PRK10762 D-ribose transporter 99.9 6.9E-22 1.5E-26 229.2 11.7 172 8-201 256-482 (501)
313 KOG0058 Peptide exporter, ABC 99.9 6E-22 1.3E-26 228.9 11.0 181 9-205 465-693 (716)
314 PRK11288 araG L-arabinose tran 99.9 7.4E-22 1.6E-26 228.9 11.9 172 9-201 257-483 (501)
315 cd00267 ABC_ATPase ABC (ATP-bi 99.9 1.2E-21 2.6E-26 192.8 11.6 151 12-188 2-155 (157)
316 PRK10982 galactose/methyl gala 99.9 7.9E-22 1.7E-26 228.1 11.9 173 8-199 249-476 (491)
317 COG1132 MdlB ABC-type multidru 99.9 1.6E-21 3.4E-26 229.4 14.0 176 9-204 328-553 (567)
318 TIGR03771 anch_rpt_ABC anchore 99.9 8.5E-22 1.8E-26 205.2 10.1 161 38-211 4-209 (223)
319 PLN03211 ABC transporter G-25; 99.9 1.1E-21 2.5E-26 233.6 12.3 193 12-228 71-315 (659)
320 PLN03073 ABC transporter F fam 99.9 2.6E-21 5.7E-26 232.0 14.8 171 8-197 507-708 (718)
321 COG4172 ABC-type uncharacteriz 99.9 1.7E-21 3.6E-26 211.3 11.7 189 7-204 4-248 (534)
322 COG4167 SapF ABC-type antimicr 99.9 1.3E-21 2.7E-26 193.0 9.3 185 7-204 2-240 (267)
323 COG4107 PhnK ABC-type phosphon 99.8 2E-21 4.3E-26 190.3 9.1 182 7-204 4-242 (258)
324 PRK10522 multidrug transporter 99.8 6.5E-21 1.4E-25 223.4 14.9 171 9-195 322-530 (547)
325 cd03236 ABC_RNaseL_inhibitor_d 99.8 3.9E-21 8.4E-26 204.5 10.7 166 13-196 4-220 (255)
326 PLN03232 ABC transporter C fam 99.8 7.1E-21 1.5E-25 244.6 14.8 177 9-204 1234-1459(1495)
327 PLN03130 ABC transporter C fam 99.8 8.2E-21 1.8E-25 244.6 15.3 177 9-204 1237-1462(1622)
328 COG0488 Uup ATPase components 99.8 1E-20 2.2E-25 218.7 14.1 169 7-195 1-231 (530)
329 COG1101 PhnK ABC-type uncharac 99.8 4.7E-21 1E-25 193.7 9.6 180 9-201 1-236 (263)
330 COG4619 ABC-type uncharacteriz 99.8 2.1E-21 4.5E-26 189.4 5.4 168 9-192 3-212 (223)
331 TIGR01194 cyc_pep_trnsptr cycl 99.8 1.8E-20 3.8E-25 220.1 14.2 173 9-196 337-552 (555)
332 COG4148 ModC ABC-type molybdat 99.8 3.8E-21 8.3E-26 200.6 7.5 168 29-210 15-225 (352)
333 TIGR01187 potA spermidine/putr 99.8 4.2E-21 9.1E-26 211.1 7.9 148 45-204 1-191 (325)
334 TIGR02868 CydC thiol reductant 99.8 2.7E-20 5.9E-25 217.0 15.2 147 9-173 334-529 (529)
335 cd03238 ABC_UvrA The excision 99.8 1.8E-20 3.8E-25 188.8 11.6 148 25-192 8-166 (176)
336 PTZ00265 multidrug resistance 99.8 1.7E-20 3.8E-25 239.6 13.9 165 9-188 382-654 (1466)
337 TIGR00957 MRP_assoc_pro multi 99.8 2.2E-20 4.7E-25 240.5 14.8 179 9-204 1284-1509(1522)
338 COG0396 sufC Cysteine desulfur 99.8 3.6E-20 7.8E-25 189.4 13.2 178 7-198 1-229 (251)
339 PTZ00265 multidrug resistance 99.8 1.9E-20 4E-25 239.3 13.9 183 9-203 1165-1452(1466)
340 COG4674 Uncharacterized ABC-ty 99.8 4.9E-21 1.1E-25 190.9 6.7 185 8-211 4-243 (249)
341 PTZ00243 ABC transporter; Prov 99.8 2.5E-20 5.4E-25 239.8 15.1 178 9-203 1308-1533(1560)
342 PLN03073 ABC transporter F fam 99.8 4.3E-20 9.4E-25 221.5 15.4 175 7-198 175-426 (718)
343 TIGR02857 CydD thiol reductant 99.8 3.1E-20 6.8E-25 216.5 12.9 158 9-184 320-527 (529)
344 TIGR00956 3a01205 Pleiotropic 99.8 1.1E-19 2.3E-24 232.0 16.4 210 9-230 759-1019(1394)
345 TIGR01271 CFTR_protein cystic 99.8 9.7E-20 2.1E-24 234.0 14.6 177 9-203 1217-1440(1490)
346 COG4618 ArpD ABC-type protease 99.8 1.1E-19 2.4E-24 202.4 12.2 182 4-203 329-560 (580)
347 TIGR00954 3a01203 Peroxysomal 99.8 1.7E-19 3.7E-24 215.6 14.8 161 9-190 451-655 (659)
348 PLN03232 ABC transporter C fam 99.8 1.7E-19 3.7E-24 232.0 15.6 180 9-203 614-828 (1495)
349 PLN03140 ABC transporter G fam 99.8 3.7E-19 8E-24 226.8 17.4 206 9-228 867-1135(1470)
350 PLN03130 ABC transporter C fam 99.8 2.3E-19 4.9E-24 231.4 14.8 179 9-203 614-828 (1622)
351 TIGR00957 MRP_assoc_pro multi 99.8 3.1E-19 6.7E-24 229.9 15.9 180 9-203 636-850 (1522)
352 PRK13409 putative ATPase RIL; 99.8 1.3E-19 2.7E-24 213.7 10.5 156 15-187 79-285 (590)
353 TIGR00955 3a01204 The Eye Pigm 99.8 2E-19 4.3E-24 213.6 12.2 187 25-228 38-275 (617)
354 KOG0055 Multidrug/pheromone ex 99.8 1.9E-19 4E-24 218.6 11.1 179 9-203 987-1213(1228)
355 cd03270 ABC_UvrA_I The excisio 99.8 5.6E-19 1.2E-23 184.6 12.1 78 111-196 139-226 (226)
356 KOG0056 Heavy metal exporter H 99.8 4.9E-19 1.1E-23 195.1 11.1 175 9-203 537-761 (790)
357 KOG0061 Transporter, ABC super 99.8 8.8E-19 1.9E-23 207.1 14.0 205 9-230 25-281 (613)
358 COG0488 Uup ATPase components 99.8 5.9E-19 1.3E-23 204.1 11.8 164 7-188 319-511 (530)
359 TIGR00956 3a01205 Pleiotropic 99.8 1.2E-18 2.6E-23 222.4 12.2 168 25-201 74-298 (1394)
360 TIGR01271 CFTR_protein cystic 99.8 2.7E-18 5.9E-23 220.7 15.0 163 25-203 439-636 (1490)
361 COG4778 PhnL ABC-type phosphon 99.8 7.5E-19 1.6E-23 171.9 5.7 162 8-182 3-221 (235)
362 COG4133 CcmA ABC-type transpor 99.7 3.3E-18 7.2E-23 170.3 10.0 152 9-176 2-193 (209)
363 PLN03140 ABC transporter G fam 99.7 1.3E-18 2.7E-23 222.0 8.9 164 25-201 178-425 (1470)
364 PTZ00243 ABC transporter; Prov 99.7 4.4E-18 9.5E-23 219.2 12.9 163 25-204 673-871 (1560)
365 KOG0054 Multidrug resistance-a 99.7 1.3E-17 2.8E-22 206.8 14.3 179 9-204 1138-1363(1381)
366 KOG0059 Lipid exporter ABCA1 a 99.7 4.8E-18 1E-22 208.7 9.3 177 8-201 563-785 (885)
367 COG4138 BtuD ABC-type cobalami 99.7 1.4E-18 2.9E-23 170.7 2.6 188 8-217 2-235 (248)
368 COG4136 ABC-type uncharacteriz 99.7 3.3E-17 7.2E-22 157.5 10.8 156 9-177 2-199 (213)
369 COG4615 PvdE ABC-type sideroph 99.7 3E-17 6.4E-22 178.0 10.9 171 9-196 322-530 (546)
370 COG5265 ATM1 ABC-type transpor 99.7 4.2E-17 9E-22 178.5 11.1 176 9-204 262-487 (497)
371 cd03278 ABC_SMC_barmotin Barmo 99.7 4.5E-17 9.8E-22 167.0 10.0 144 29-188 14-190 (197)
372 cd03279 ABC_sbcCD SbcCD and ot 99.7 8.4E-17 1.8E-21 166.6 11.2 164 9-188 5-208 (213)
373 KOG0927 Predicted transporter 99.7 2.5E-17 5.5E-22 184.6 7.7 167 7-192 387-584 (614)
374 KOG0054 Multidrug resistance-a 99.7 8.9E-17 1.9E-21 199.5 12.9 180 8-202 517-730 (1381)
375 KOG2355 Predicted ABC-type tra 99.6 5.7E-16 1.2E-20 155.8 11.0 174 8-197 12-231 (291)
376 cd03271 ABC_UvrA_II The excisi 99.6 6.5E-16 1.4E-20 164.9 9.6 80 111-198 171-261 (261)
377 COG4170 SapD ABC-type antimicr 99.6 5.1E-16 1.1E-20 156.4 5.7 188 7-203 1-248 (330)
378 cd03272 ABC_SMC3_euk Eukaryoti 99.6 1.7E-15 3.7E-20 159.3 9.9 67 112-187 161-234 (243)
379 KOG0927 Predicted transporter 99.6 4.1E-15 8.9E-20 167.1 12.3 174 9-201 75-307 (614)
380 KOG0066 eIF2-interacting prote 99.6 2.5E-15 5.5E-20 164.0 10.2 163 8-188 585-776 (807)
381 cd03240 ABC_Rad50 The catalyti 99.6 1.7E-15 3.6E-20 156.2 8.1 146 32-191 17-200 (204)
382 cd03274 ABC_SMC4_euk Eukaryoti 99.6 3E-15 6.4E-20 155.3 5.8 68 112-188 130-204 (212)
383 COG1245 Predicted ATPase, RNas 99.5 2.4E-14 5.3E-19 158.0 11.3 137 38-184 365-527 (591)
384 cd03275 ABC_SMC1_euk Eukaryoti 99.5 2.5E-14 5.5E-19 151.5 10.9 71 113-191 159-236 (247)
385 cd03280 ABC_MutS2 MutS2 homolo 99.5 2.3E-14 4.9E-19 147.1 9.6 140 29-195 18-171 (200)
386 KOG0062 ATPase component of AB 99.5 1.3E-14 2.9E-19 162.2 7.2 161 9-188 80-270 (582)
387 PF00005 ABC_tran: ABC transpo 99.5 6.6E-15 1.4E-19 140.8 4.1 102 28-135 1-137 (137)
388 KOG0065 Pleiotropic drug resis 99.5 9.1E-15 2E-19 178.2 4.6 177 24-213 803-1029(1391)
389 COG4178 ABC-type uncharacteriz 99.5 1.4E-13 3.1E-18 159.4 14.2 154 8-177 391-578 (604)
390 cd03276 ABC_SMC6_euk Eukaryoti 99.5 2E-13 4.3E-18 140.2 11.5 149 29-187 13-189 (198)
391 cd03273 ABC_SMC2_euk Eukaryoti 99.5 2.5E-13 5.4E-18 144.1 10.8 65 111-184 168-239 (251)
392 TIGR00630 uvra excinuclease AB 99.4 1.9E-13 4.2E-18 167.1 10.4 81 112-200 831-922 (924)
393 COG1129 MglA ABC-type sugar tr 99.4 2.5E-13 5.3E-18 154.7 10.0 172 8-200 262-487 (500)
394 PRK00635 excinuclease ABC subu 99.4 3.1E-13 6.6E-18 172.4 10.6 82 113-202 813-905 (1809)
395 cd03283 ABC_MutS-like MutS-lik 99.4 1.9E-13 4.1E-18 140.6 5.5 133 25-177 14-152 (199)
396 PRK00349 uvrA excinuclease ABC 99.4 5.1E-13 1.1E-17 163.8 9.4 85 111-203 832-927 (943)
397 cd03243 ABC_MutS_homologs The 99.4 7E-13 1.5E-17 136.2 8.8 148 32-198 23-174 (202)
398 cd03227 ABC_Class2 ABC-type Cl 99.4 5E-13 1.1E-17 132.8 6.2 127 39-186 20-153 (162)
399 COG1245 Predicted ATPase, RNas 99.4 1.2E-12 2.6E-17 144.9 8.6 163 9-188 66-287 (591)
400 cd03239 ABC_SMC_head The struc 99.4 1E-12 2.2E-17 132.8 7.3 138 42-188 24-172 (178)
401 KOG0062 ATPase component of AB 99.3 1.3E-12 2.8E-17 146.6 7.3 169 8-194 361-559 (582)
402 cd03277 ABC_SMC5_euk Eukaryoti 99.3 1.3E-11 2.9E-16 128.2 10.5 74 112-191 129-211 (213)
403 cd03285 ABC_MSH2_euk MutS2 hom 99.3 3.6E-12 7.8E-17 133.3 5.2 150 25-197 17-175 (222)
404 COG2401 ABC-type ATPase fused 99.2 1.9E-11 4.1E-16 134.1 9.8 160 25-192 396-587 (593)
405 cd03282 ABC_MSH4_euk MutS4 hom 99.2 7.7E-12 1.7E-16 129.2 6.1 135 25-178 16-156 (204)
406 cd03284 ABC_MutS1 MutS1 homolo 99.2 1.8E-11 3.9E-16 127.5 6.3 152 25-199 18-177 (216)
407 KOG0060 Long-chain acyl-CoA tr 99.2 1.3E-10 2.9E-15 132.1 12.1 162 8-188 432-640 (659)
408 KOG0066 eIF2-interacting prote 99.1 3.4E-11 7.3E-16 132.2 5.9 167 9-192 264-487 (807)
409 cd03281 ABC_MSH5_euk MutS5 hom 99.1 8.3E-11 1.8E-15 122.3 7.6 125 40-178 29-159 (213)
410 KOG0064 Peroxisomal long-chain 99.1 2E-10 4.3E-15 129.1 10.9 151 9-177 481-673 (728)
411 smart00534 MUTSac ATPase domai 99.0 1.6E-10 3.4E-15 117.4 4.6 119 42-177 1-126 (185)
412 cd03287 ABC_MSH3_euk MutS3 hom 99.0 6E-10 1.3E-14 116.6 8.3 135 25-177 18-158 (222)
413 cd01851 GBP Guanylate-binding 99.0 3E-10 6.4E-15 119.0 5.8 195 38-240 5-222 (224)
414 COG0178 UvrA Excinuclease ATPa 99.0 7.9E-10 1.7E-14 130.0 9.7 81 114-203 827-919 (935)
415 COG3845 ABC-type uncharacteriz 99.0 2.5E-09 5.4E-14 120.5 12.1 177 8-200 256-489 (501)
416 PRK00635 excinuclease ABC subu 99.0 1.4E-09 3E-14 139.6 10.2 82 114-204 1704-1797(1809)
417 cd03241 ABC_RecN RecN ATPase i 99.0 2.6E-09 5.7E-14 115.2 10.9 67 113-188 174-247 (276)
418 TIGR02858 spore_III_AA stage I 98.9 4.7E-09 1E-13 112.9 9.8 113 41-175 112-231 (270)
419 TIGR01069 mutS2 MutS2 family p 98.9 1.6E-09 3.4E-14 131.7 6.5 130 31-177 314-449 (771)
420 KOG0065 Pleiotropic drug resis 98.9 4.7E-09 1E-13 129.2 8.8 167 25-202 128-350 (1391)
421 cd03286 ABC_MSH6_euk MutS6 hom 98.8 3.8E-09 8.3E-14 110.3 5.8 137 25-179 17-159 (218)
422 cd03242 ABC_RecF RecF is a rec 98.8 1.7E-08 3.6E-13 108.6 10.6 68 114-192 188-269 (270)
423 COG3910 Predicted ATPase [Gene 98.8 3.4E-08 7.3E-13 99.2 9.9 141 25-177 23-192 (233)
424 KOG0063 RNAse L inhibitor, ABC 98.8 1E-08 2.2E-13 113.4 6.8 136 39-184 366-528 (592)
425 PRK07721 fliI flagellum-specif 98.7 5.9E-08 1.3E-12 110.9 12.1 154 25-200 146-340 (438)
426 PF02463 SMC_N: RecF/RecN/SMC 98.7 7E-08 1.5E-12 100.1 10.6 58 112-177 139-203 (220)
427 PRK00349 uvrA excinuclease ABC 98.7 1.8E-08 3.9E-13 124.3 6.3 85 111-203 491-585 (943)
428 PRK00409 recombination and DNA 98.7 1.2E-08 2.5E-13 124.5 4.4 131 32-179 320-456 (782)
429 TIGR00630 uvra excinuclease AB 98.7 2.4E-08 5.1E-13 123.0 6.4 85 110-202 488-582 (924)
430 PTZ00132 GTP-binding nuclear p 98.4 5E-07 1.1E-11 93.4 7.9 41 114-160 157-205 (215)
431 PRK08533 flagellar accessory p 98.4 5.6E-07 1.2E-11 94.8 7.7 28 38-65 22-50 (230)
432 PRK00064 recF recombination pr 98.3 2.3E-06 4.9E-11 96.1 11.1 69 114-192 278-359 (361)
433 PF13304 AAA_21: AAA domain; P 98.3 5.2E-07 1.1E-11 91.9 5.1 56 113-175 240-301 (303)
434 KOG0063 RNAse L inhibitor, ABC 98.3 5E-07 1.1E-11 100.3 5.2 142 32-186 93-286 (592)
435 PRK13695 putative NTPase; Prov 98.3 5E-07 1.1E-11 90.6 3.7 134 42-195 2-156 (174)
436 cd01120 RecA-like_NTPases RecA 98.2 3.2E-06 6.9E-11 81.7 6.6 124 42-176 1-140 (165)
437 cd00820 PEPCK_HprK Phosphoenol 98.2 1.8E-06 4E-11 80.3 4.6 35 25-61 2-36 (107)
438 TIGR02788 VirB11 P-type DNA tr 98.1 1.3E-06 2.9E-11 95.8 3.2 151 32-216 138-293 (308)
439 cd01124 KaiC KaiC is a circadi 98.1 4E-06 8.6E-11 84.2 5.6 43 126-175 97-142 (187)
440 TIGR03238 dnd_assoc_3 dnd syst 98.1 2E-06 4.4E-11 98.1 3.5 42 24-73 18-59 (504)
441 TIGR01026 fliI_yscN ATPase Fli 98.0 2.5E-05 5.3E-10 89.7 10.1 38 25-65 151-188 (440)
442 PRK05399 DNA mismatch repair p 98.0 1.7E-05 3.7E-10 98.1 8.7 130 27-177 597-734 (854)
443 smart00382 AAA ATPases associa 97.9 7.2E-05 1.6E-09 69.2 10.3 26 40-65 2-27 (148)
444 cd01128 rho_factor Transcripti 97.9 2.3E-05 5E-10 83.7 7.3 67 114-192 142-211 (249)
445 PRK06067 flagellar accessory p 97.9 2.4E-05 5.2E-10 82.2 7.1 124 38-175 23-167 (234)
446 PRK06793 fliI flagellum-specif 97.9 4.2E-05 9.1E-10 87.3 9.1 159 9-196 130-304 (432)
447 PF00488 MutS_V: MutS domain V 97.8 7.9E-05 1.7E-09 78.9 9.8 134 27-177 32-170 (235)
448 TIGR00634 recN DNA repair prot 97.8 1.8E-05 3.9E-10 94.0 5.0 68 112-188 443-517 (563)
449 TIGR00618 sbcc exonuclease Sbc 97.7 3.3E-05 7.2E-10 97.9 6.3 74 108-188 949-1035(1042)
450 cd01131 PilT Pilus retraction 97.7 5.9E-05 1.3E-09 77.6 6.2 24 42-65 3-26 (198)
451 PHA02562 46 endonuclease subun 97.6 5.7E-05 1.2E-09 89.3 5.7 69 114-192 473-555 (562)
452 PRK10869 recombination and rep 97.6 5.4E-05 1.2E-09 89.6 5.4 68 112-188 433-507 (553)
453 PRK10246 exonuclease subunit S 97.6 4.7E-05 1E-09 96.4 4.7 73 108-187 948-1031(1047)
454 PF13555 AAA_29: P-loop contai 97.6 6.7E-05 1.4E-09 63.1 3.9 33 32-65 16-48 (62)
455 PRK06002 fliI flagellum-specif 97.6 0.00012 2.5E-09 84.0 7.0 58 8-74 138-195 (450)
456 PRK13830 conjugal transfer pro 97.5 0.00028 6E-09 87.4 9.6 45 126-177 654-699 (818)
457 cd01130 VirB11-like_ATPase Typ 97.5 8.2E-05 1.8E-09 75.7 4.2 38 31-74 18-55 (186)
458 cd01125 repA Hexameric Replica 97.5 8.1E-05 1.8E-09 78.6 4.0 42 126-174 113-160 (239)
459 PRK06995 flhF flagellar biosyn 97.4 0.00021 4.5E-09 82.9 6.1 36 28-65 246-281 (484)
460 TIGR01070 mutS1 DNA mismatch r 97.4 0.00042 9.2E-09 85.7 8.9 124 39-177 591-719 (840)
461 cd00009 AAA The AAA+ (ATPases 97.4 0.00051 1.1E-08 64.3 7.4 107 39-174 18-131 (151)
462 PRK10078 ribose 1,5-bisphospho 97.4 0.00014 3E-09 73.9 3.7 26 40-65 2-27 (186)
463 TIGR00235 udk uridine kinase. 97.4 0.00011 2.4E-09 75.8 3.0 28 38-65 4-31 (207)
464 TIGR03015 pepcterm_ATPase puta 97.3 0.00026 5.7E-09 75.4 5.6 40 25-65 29-68 (269)
465 PRK09825 idnK D-gluconate kina 97.3 0.00016 3.5E-09 73.1 3.6 27 39-65 2-28 (176)
466 PRK10416 signal recognition pa 97.3 0.00065 1.4E-08 75.2 8.4 28 38-65 112-139 (318)
467 PRK03918 chromosome segregatio 97.3 0.00022 4.7E-09 89.0 4.9 71 109-187 788-867 (880)
468 TIGR00767 rho transcription te 97.3 0.00038 8.2E-09 78.6 6.3 53 9-65 130-193 (415)
469 TIGR01420 pilT_fam pilus retra 97.3 0.00046 9.9E-09 77.1 7.0 109 39-177 121-234 (343)
470 TIGR00606 rad50 rad50. This fa 97.2 0.00014 3.1E-09 94.2 2.9 66 109-180 1199-1277(1311)
471 PRK01156 chromosome segregatio 97.2 0.00029 6.3E-09 88.2 5.3 72 110-188 802-884 (895)
472 PRK09862 putative ATP-dependen 97.2 0.00029 6.3E-09 82.2 4.5 54 12-74 187-240 (506)
473 PRK09270 nucleoside triphospha 97.1 0.00027 5.8E-09 74.3 3.2 33 38-74 31-63 (229)
474 TIGR03263 guanyl_kin guanylate 97.1 0.00038 8.2E-09 69.8 3.7 26 40-65 1-26 (180)
475 PRK15494 era GTPase Era; Provi 97.1 0.00082 1.8E-08 75.0 6.4 53 9-65 18-77 (339)
476 COG0178 UvrA Excinuclease ATPa 97.1 0.00058 1.3E-08 81.7 5.3 83 114-205 486-579 (935)
477 PRK07594 type III secretion sy 97.1 0.0005 1.1E-08 78.7 4.6 52 9-65 129-180 (433)
478 PRK00300 gmk guanylate kinase; 97.1 0.00044 9.5E-09 70.9 3.7 28 38-65 3-30 (205)
479 cd01136 ATPase_flagellum-secre 97.0 0.00083 1.8E-08 74.4 5.7 46 15-65 49-94 (326)
480 TIGR02322 phosphon_PhnN phosph 97.0 0.00046 1E-08 69.3 3.3 26 40-65 1-26 (179)
481 PRK07196 fliI flagellum-specif 97.0 0.00053 1.1E-08 78.5 3.9 38 25-65 143-180 (434)
482 cd04155 Arl3 Arl3 subfamily. 96.9 0.00082 1.8E-08 66.3 4.3 34 40-73 14-47 (173)
483 PRK13898 type IV secretion sys 96.9 0.0018 4E-08 80.1 7.8 45 126-177 644-689 (800)
484 TIGR02168 SMC_prok_B chromosom 96.9 0.00083 1.8E-08 85.7 4.7 66 110-184 1090-1162(1179)
485 COG1159 Era GTPase [General fu 96.8 0.0017 3.8E-08 70.2 6.1 123 39-177 5-128 (298)
486 cd02025 PanK Pantothenate kina 96.8 0.00053 1.1E-08 71.9 2.0 24 42-65 1-24 (220)
487 cd02023 UMPK Uridine monophosp 96.8 0.00064 1.4E-08 69.5 2.5 23 42-64 1-23 (198)
488 TIGR03881 KaiC_arch_4 KaiC dom 96.8 0.0047 1E-07 64.5 8.6 24 38-61 18-41 (229)
489 PRK08149 ATP synthase SpaL; Va 96.7 0.0015 3.3E-08 74.7 5.0 38 25-65 139-176 (428)
490 PF13476 AAA_23: AAA domain; P 96.7 0.0015 3.3E-08 65.6 4.4 35 28-65 10-44 (202)
491 PF03193 DUF258: Protein of un 96.7 0.0013 2.8E-08 65.8 3.7 27 39-65 34-60 (161)
492 TIGR00554 panK_bact pantothena 96.7 0.00082 1.8E-08 73.4 2.5 26 40-65 62-87 (290)
493 cd01852 AIG1 AIG1 (avrRpt2-ind 96.7 0.002 4.3E-08 65.8 5.1 24 42-65 2-25 (196)
494 PF09818 ABC_ATPase: Predicted 96.7 0.0084 1.8E-07 68.2 10.4 147 38-188 243-412 (448)
495 cd04104 p47_IIGP_like p47 (47- 96.7 0.0013 2.9E-08 67.3 3.8 23 43-65 4-26 (197)
496 cd01878 HflX HflX subfamily. 96.7 0.0033 7.1E-08 64.2 6.5 25 41-65 42-66 (204)
497 cd00879 Sar1 Sar1 subfamily. 96.7 0.0012 2.7E-08 66.3 3.3 36 27-65 9-44 (190)
498 PRK05480 uridine/cytidine kina 96.7 0.0012 2.6E-08 68.2 3.1 26 39-64 5-30 (209)
499 TIGR03880 KaiC_arch_3 KaiC dom 96.7 0.0061 1.3E-07 63.6 8.4 24 38-61 14-37 (224)
500 cd02026 PRK Phosphoribulokinas 96.6 0.0012 2.6E-08 71.6 3.1 24 42-65 1-24 (273)
No 1
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=100.00 E-value=3.8e-165 Score=1345.13 Aligned_cols=740 Identities=64% Similarity=1.008 Sum_probs=710.4
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccc
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC 86 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~ 86 (813)
.+.+|++|..+.|+..+...+.+.+.+..+|.+|++|+|+||++||||||||+|||+.|.+||...||.|+++|+|+++.
T Consensus 4 r~stQlIDe~keFn~s~l~~F~q~vgl~d~Gl~YhVVavmG~QSSGKSTLLN~LFgTnF~~MDA~~gRqQTTKGIWlar~ 83 (772)
T KOG2203|consen 4 RCSTQLIDEEKEFNVSGLDYFQQCVGLRDCGLSYHVVAVMGSQSSGKSTLLNHLFGTNFREMDAFKGRQQTTKGIWLARC 83 (772)
T ss_pred cccceeeccccccchhhHHHHHHHhcccccCcceeEEEEecCcccchHHHHHHHhccChHHHHhhhccccccchhhHHhh
Confidence 45799999999998755667889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchhHHHHhhCCCccccccchHHHHHHHHHHHHHHHhHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCC--c
Q 003528 87 AGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRK--T 164 (813)
Q Consensus 87 ~~~e~~~~vld~~g~~~~e~~~~~~~~erQrv~iA~ALadvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g--~ 164 (813)
.+.++.++|||++|++++||+++ ++||||.++||.|+++|+|+|+|++++|.++++|++++++|++++++|+..++ +
T Consensus 84 ~~i~p~i~vmDvEGTDGrERGED-qdFErksALFaiavSevvivNMW~~qIG~~Q~aN~~LLKTVfeV~lrLF~~rk~k~ 162 (772)
T KOG2203|consen 84 AGIEPCILVMDVEGTDGRERGED-QDFERKSALFAIAVSEVVIVNMWEHQIGLYQGANMALLKTVFEVNLRLFSPRKNKT 162 (772)
T ss_pred cCCCCceEEEecccCCccccccc-ccHHHHhHHHHHhhhheehhhHHHHHhhHhhccCcHHHHHHHHHHHHHhCCCCCce
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999998765 8
Q ss_pred eEEEEeecC-CCcccccCcceeeecCCeEEEecCcccccCCccchhhhcccccccccchhhHHHHHHHHHHHHhhhhcc-
Q 003528 165 TLMFVIRDK-TRTPLENLEPVLREDIQKIWDSVPKPQAHMETPLSEFFNVEVVALSSFEEKEELFKEQVASLRQRFYHS- 242 (813)
Q Consensus 165 TIL~VtHD~-~~~~~~~~~~vll~~~GkI~~~g~~~e~~~~~~l~d~f~~~~~~lp~~~~~~e~f~~~v~~Lr~~f~~~- 242 (813)
+++||++|. ..++...+..+++.+..+||.+.++|+.+++..+.|||++.+.+++||+.++++|.++|..||+||.++
T Consensus 163 ~LlFVIRD~~~~TplenLe~~l~~dlqkIW~sl~KPe~~e~s~l~DfFdv~~v~Ls~~~~kedqF~e~V~~LrqrFv~s~ 242 (772)
T KOG2203|consen 163 LLLFVIRDKTGVTPLENLEDVLREDLQKIWDSLSKPEGHENSPLNDFFDVEFVGLSHKELKEDQFKEQVASLRQRFVHSG 242 (772)
T ss_pred EEEEEEecccCCCchHHhhHHHHHHHHHHHHhcCCcccccCCchhhhhceeeeecchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999 558888889999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCcccccchhhhHHHHHHHHHhccCCCCchhhhhhhhhchHHHHHHHHhhhhhhhhHHHHHHHHhcCCcc
Q 003528 243 VAPGGLAGDRRGVVPASGFSFSAHEIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYSSFAANEEWCELEAAVQSGPIS 322 (813)
Q Consensus 243 ~~~~~l~~~~~~~ip~~gl~~~~~~iW~~I~~n~dLdlp~q~~~lA~~rC~Ei~~~~~~~f~~~~~~~~l~~~~~~g~~~ 322 (813)
++|.+++++||++||++||++|+++||++|++|||||||+||.|||++||+||++++++.|.+++.|..+.+.++.|+++
T Consensus 243 ~s~~~f~~d~~~~iPadGfs~~a~qiWd~Ie~NKDLDLPtqqvlvAt~rceEIanE~~e~fitne~~~e~~e~l~g~l~s 322 (772)
T KOG2203|consen 243 ISPYGFAGDYHGVIPADGFSFYAEQIWDVIEENKDLDLPTQQVLVATVRCEEIANEKLEEFITNEKWLELIEALQGNLVS 322 (772)
T ss_pred CCCCccccccCCcccccchhhhHHHHHHHHHhCcCCCCchhhhHHhhhhHHHHHHHHHHHhhhhhhHHHHHhhhcCCCcc
Confidence 77878899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhchhhhhhhhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHH
Q 003528 323 SFGKKLSSILETCLSGYDGEVLYFDEGVRSAKRKQLEDKLLQLVQPAFQSMLGHIRSGTLDKFKDAFDKALSGGEGFSSA 402 (813)
Q Consensus 323 ~~g~~~~~~~~~~l~~yd~~a~~y~~~V~~~kr~~L~~~i~~~l~~~~~~~l~~l~~~~~~~f~~~l~~~~~~~~~F~~~ 402 (813)
+||+++..++++|+++||.+|+||+++||++||++|..++++.++|.|+.+|+|||+.++++||.++++.++.+.+|+++
T Consensus 323 ~l~~kL~~i~e~~lseYD~qAs~y~~~V~~~KrqqL~~kl~s~v~~~fq~~L~~L~~~lle~fk~~~~~~~~~~~gF~es 402 (772)
T KOG2203|consen 323 GLGKKLSSILEECLSEYDEQASRYDEGVYSEKRQQLNEKLLSHVYPTFQDVLGHLREGLLESFKLAFEKALKATEGFSES 402 (772)
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhHHHHHHHHHHHhhhhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHhhcCCCCC
Q 003528 403 AHHCSKFYMNLFDEACADAVIEQANWDMSKARDKFQRDIDAHIASVRAAKLGELTAIFEAKLNESLSGPVEALLDGANNE 482 (813)
Q Consensus 403 ~~~~~~~~~~~f~~~~~~~~i~~~~w~~~~~~~~l~~~l~~~~~~~r~~~l~~l~~~~ek~~~~~l~~~v~~ll~~~~~~ 482 (813)
+..|.++|+.+|+++|+++.++|+.||+++++++|.++|++|+.++|..+|++++..||+++..+|++||+.+|++++++
T Consensus 403 ~~~~~~~~~~~fde~~E~~~~~~~~wd~ski~~Kls~diea~i~~lr~akLke~~~~~e~~l~~else~Ve~ll~~~s~e 482 (772)
T KOG2203|consen 403 VADGKQSCEKKFDEECETAKIEQALWDTSKIREKLSRDIEAHISSLRTAKLKEKTGLYEKKLVPELSEPVEALLDGASKE 482 (772)
T ss_pred HHHHHHHHHHHHHhhhHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHhhhHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhcCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhccccCCCC
Q 003528 483 TWPAIRKLLRCETESAISGFSDALYGFD--MDEETKEKMLASLENYAKGVVEAKAREESGRVLMRMKDRFTSLFSHDSDS 560 (813)
Q Consensus 483 ~W~~i~~~f~~~~~~~~~~~~~~~~~~~--~~~~e~~~~~~~lr~~~~~~l~~~~~e~~~~~l~~l~~rFe~~FryD~~g 560 (813)
+||.|++.|++..+.++..+++...||+ +++++++++++.||.+||..++.|++|++++|+++||+||+++||||.||
T Consensus 483 vW~ti~n~f~~e~n~av~~~~~~~~~f~~~~de~t~~~m~~nlk~~a~~~~etk~~ee~~~il~rmrdRFe~vFr~Dsd~ 562 (772)
T KOG2203|consen 483 VWDTIRNLFRRETNTAVYGLSNAVYGFEIGLDEETRDKMVKNLKNYAWGTVETKAKEEADRILMRMRDRFETVFRYDSDG 562 (772)
T ss_pred cHHHHHHHHHhccchhHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred CCccccCccchhhHHHHHHHHHHHHHhhHhheecCCCCccchhhhhhhccCCCCCccccCCCCCCCCCCCCccCCCCCCC
Q 003528 561 MPRVWTGKEDIRGITKLARSASLKLLSVMAAIRLDDETDNIESTLTLALVDSPSNAATNRSITNHDPLASSTWEQVPSSK 640 (813)
Q Consensus 561 ~PR~W~~~~di~~~~~~Ar~~al~ll~~l~~~rl~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 640 (813)
|||+|++++|||+||+.||++||+||+||+.||++|+ ++.+|+.++.+..++.+++ +.+.||++++ .++.
T Consensus 563 mPrlWk~kedI~~~~r~ar~~aL~llsVla~irlsDn---ie~~l~v~l~~~e~~~~s~--i~t~d~lass-----~~~~ 632 (772)
T KOG2203|consen 563 MPRLWKGKEDIDAITRVARSAALKLLSVLAVIRLSDN---IEKTLTVALADEESNETSS--IYTNDPLASS-----ASFA 632 (772)
T ss_pred CcccccCcchhHHHHHHHHHHHHHHHHHHHhheecCC---ccccCccccccCCCCCCCc--ccccCccccC-----Cccc
Confidence 9999999999999999999999999999999999955 4555777888876654443 6678999866 7789
Q ss_pred cccCHHHHHHHHHHHHhhhhHHHHHhhHHHHHhhhcCCCCCcHHHHHHHHHhchHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003528 641 TLITPVQCKSLWRQFKSETEYSVTQAISAQEANKRNNNWLPPPWAIAAMMVLGFNEFMTLLRNPLYLGFIFIGYLLIKAL 720 (813)
Q Consensus 641 ~ll~~~~~~~~~~~F~~~~~~~~~~A~~~~ea~r~~~~~~iP~w~~~~l~vLGwNE~m~vlrnPl~~~~~~~~~~~~~~~ 720 (813)
|||||.||++||+||| +++|++.||+++||++ ++++||||+|++|+||||||||++|||||||+++||+++++|+|
T Consensus 633 tilt~vq~ksi~~qFk-rt~~~v~~d~k~s~~n---t~t~iPPw~~vlLiVLG~NEFmallRNPl~l~~~~v~~~~~~~l 708 (772)
T KOG2203|consen 633 TILTPVQCKSIWRQFK-RTEYTVTQDIKRSEIN---TNTWIPPWAIVLLIVLGWNEFMALLRNPLYLLVLFVGGLVSKAL 708 (772)
T ss_pred eeccHHHHHHHHHHHH-HhhhHHHHHHHHHHhc---CCCCCCcHHHHHHHHHhHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 9999999999999999 8889999998888887 55667779999999999999999999999999999999999999
Q ss_pred HHHhcccccccccccchhhhhhhhhhHHHHHHHHHHHhcCCC
Q 003528 721 WVQLDISGEFRNGALPGLISLSTKFLPTVMNLLKKLAEEGQI 762 (813)
Q Consensus 721 ~~ql~~~~~~~~g~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 762 (813)
|+|++|+ +||||+|||++|++++|.|++||++++++.+||.
T Consensus 709 ~~q~~i~-ef~~~vl~~~~s~~~k~~~tv~n~lrq~ave~~a 749 (772)
T KOG2203|consen 709 WVQGLIP-EFQNGVLPGVLSISGKFRTTVMNLLRQLAVEGQA 749 (772)
T ss_pred HHhccch-hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999 9999999999999999999999999999999993
No 2
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=100.00 E-value=1.9e-144 Score=1287.39 Aligned_cols=702 Identities=48% Similarity=0.773 Sum_probs=659.3
Q ss_pred EcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccccCC---CchhHHHHhhCCCccccccchHHHHHHHHHHHH
Q 003528 46 MGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI---EPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 122 (813)
Q Consensus 46 iGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~~~~---e~~~~vld~~g~~~~e~~~~~~~~erQrv~iA~ 122 (813)
+|+|+||||||||+|||+.|++|+. .||.|||+|+|++..... .+.++++|++|+++++|+++.. ||||.++||+
T Consensus 1 ~g~qssgkstlln~lf~t~f~~m~~-~~r~qtt~gi~~~~~~~~~~~~~~~~v~d~eg~d~~er~~~~~-fe~~~alf~l 78 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQFDVMDE-SGRQQTTKGIWMAKAKEVESSESNILVLDVEGTDGRERGEDQD-FERKSALFAL 78 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCcccccc-ccccccchhhHHHhccccccCCCceEEEeCCCCCchhhccccc-hHHHHHHHHH
Confidence 6999999999999999999999999 899999999999988764 6788999999999999998755 9999999999
Q ss_pred HHHhHhhhccCCCCCCchhhcChhhHHHHHHHHHHhh-----cCCCceEEEEeecCCC-cccccCcceeeecCCeEEEec
Q 003528 123 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLF-----SPRKTTLMFVIRDKTR-TPLENLEPVLREDIQKIWDSV 196 (813)
Q Consensus 123 ALadvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~-----~~~g~TIL~VtHD~~~-~~~~~~~~vll~~~GkI~~~g 196 (813)
|+++|+|+|.|.+++|.++++|++++++||+++++|+ ..++++++||+||+.. ++.......+..+..+||...
T Consensus 79 a~s~~~iiN~w~~~iG~~~~an~~lLktvfevnl~lf~~~~~~~~k~~llfviRD~~~~tp~e~l~~~l~~dl~~iW~~i 158 (742)
T PF05879_consen 79 AVSDVLIINMWEHDIGRYQGANMGLLKTVFEVNLQLFGKSKSNDRKTLLLFVIRDHTGVTPLENLEETLREDLEKIWDSI 158 (742)
T ss_pred HhhhheeeehhhhhhhhhcccchHHHHHHHHHHHHHHhhcccCCCCceEEEEEeeCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999 4478999999999955 777777888888889999999
Q ss_pred CcccccCCccchhhhcccccccccchhhHHHHHHHHHHHHhhhhcc--CCCCCCCCCCCCcccccchhhhHHHHHHHHHh
Q 003528 197 PKPQAHMETPLSEFFNVEVVALSSFEEKEELFKEQVASLRQRFYHS--VAPGGLAGDRRGVVPASGFSFSAHEIWKVIKE 274 (813)
Q Consensus 197 ~~~e~~~~~~l~d~f~~~~~~lp~~~~~~e~f~~~v~~Lr~~f~~~--~~~~~l~~~~~~~ip~~gl~~~~~~iW~~I~~ 274 (813)
++|+.+++..+.++|++.|+++||+.+++++|.++|..||++|.++ ..+..+++.||++||++||++|+++||++|++
T Consensus 159 ~kP~~~~~~~~~d~Fd~~f~~LpH~~~~~e~F~~~v~~Lr~rf~~~~~~~~~~~~~~y~~~iP~dG~~~y~~~iW~~I~~ 238 (742)
T PF05879_consen 159 SKPEGFENSSLSDFFDLEFTALPHKILQPEKFNEDVAKLRQRFVDSKNIEDGLFKPEYHRRIPADGFSMYAENIWEQIKN 238 (742)
T ss_pred cCcccccCCChhheeeeeeeccCchhhhHHHHHHHHHHHHHHHhccCcCCCCCCchhhcCCCChHHhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999987 33434588999999999999999999999999
Q ss_pred ccCCCCchhhhhhhhhchHHHHHHHHhhhhhh-----hhHHHHHHHHhcCCcchHHHHHHHHHHHHhhchhhhhhhhcHH
Q 003528 275 NKDLDLPAHKVMVATVRCEEIANEKYSSFAAN-----EEWCELEAAVQSGPISSFGKKLSSILETCLSGYDGEVLYFDEG 349 (813)
Q Consensus 275 n~dLdlp~q~~~lA~~rC~Ei~~~~~~~f~~~-----~~~~~l~~~~~~g~~~~~g~~~~~~~~~~l~~yd~~a~~y~~~ 349 (813)
|||||||+||+|||+|||+||++++++.|..+ +.|..+.+..+.+.+++||+.+.+++++||++||.+|+||+++
T Consensus 239 nkDLDLPtqq~mlA~fRCdEI~~e~l~~f~~~~~~~~~~~~~l~~~~~~~~~~~fg~~~~~l~~~~L~~YD~~AsrY~~~ 318 (742)
T PF05879_consen 239 NKDLDLPTQQEMLAQFRCDEIANEVLEEFDEDIKELIEKWSELEEAVQGGVVEDFGKKLKSLRDKALEEYDEEASRYHKS 318 (742)
T ss_pred CccCCCCcHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999997 6777777777778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHhHhHHHHHHHHHHHhhhhhhccCCCC
Q 003528 350 VRSAKRKQLEDKLLQLVQPAFQSMLGHIRSGTLDKFKDAFDKALSGGEGFSSAAHHCSKFYMNLFDEACADAVIEQANWD 429 (813)
Q Consensus 350 V~~~kr~~L~~~i~~~l~~~~~~~l~~l~~~~~~~f~~~l~~~~~~~~~F~~~~~~~~~~~~~~f~~~~~~~~i~~~~w~ 429 (813)
||++||++|+++|...++|+|+.||+|||+.++++|++.+.+.++++.+|+..++.|.+.++.+|++.|+++.+++..|+
T Consensus 319 V~~~Kr~eL~~~i~~~l~~lf~~qL~~L~~~~l~~Fk~~l~~~lk~~~~Fa~~v~~~~~~~~~~F~~~a~~~~i~~~~ws 398 (742)
T PF05879_consen 319 VYQEKRQELESKIDSELQPLFQKQLKHLRKKLLESFKEALSSALKSGEDFAEAVRECKQSALEEFEESAEDLVIEGADWS 398 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcc
Confidence 99999999999999999999999999999999999999999888888999999999999999999999999999999999
Q ss_pred c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHhhcCCCCChHHHHHHHHHHHHHHHHhhhhhhhcC
Q 003528 430 M-SKARDKFQRDIDAHIASVRAAKLGELTAIFEAKLNESLSGPVEALLDGANNETWPAIRKLLRCETESAISGFSDALYG 508 (813)
Q Consensus 430 ~-~~~~~~l~~~l~~~~~~~r~~~l~~l~~~~ek~~~~~l~~~v~~ll~~~~~~~W~~i~~~f~~~~~~~~~~~~~~~~~ 508 (813)
+ +++++.|+++|+++++++|.+++++++++++|++++.|+++|..+|++|+++||++|++.|.+++++++++|.+++.|
T Consensus 399 ~se~~~~~L~~dLd~~~~~lR~~el~~l~~~~eK~l~~~l~e~v~~~l~~~~~d~Wd~I~~~f~~~~~~~~~~~~~~~~~ 478 (742)
T PF05879_consen 399 YSEEEREKLEEDLDEHSSKLRKEELNELVARIEKKLKSELKEPVESLLENPSPDMWDRIRKLFESATESAVSKFSDRLKG 478 (742)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9 599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHhhhccccCCCCCCccccCccchhhHHHHHHHHHHHHH
Q 003528 509 FDMDEETKEKMLASLENYAKGVVEAKAREES--GRVLMRMKDRFTSLFSHDSDSMPRVWTGKEDIRGITKLARSASLKLL 586 (813)
Q Consensus 509 ~~~~~~e~~~~~~~lr~~~~~~l~~~~~e~~--~~~l~~l~~rFe~~FryD~~g~PR~W~~~~di~~~~~~Ar~~al~ll 586 (813)
|+++++|+++++++||.++|.+|+.+|||+. ++|+++||+||+++||||++|+||+|+++|||++||++||++||+||
T Consensus 479 f~~s~~e~~~~~~~lr~~aw~~l~~ki~e~~~~~~ll~~LkdRFe~~FryDe~g~PRvW~~eddI~~if~~ARe~AL~LL 558 (742)
T PF05879_consen 479 FGLSEEENEKALKKLRRKAWSVLREKIREEASEDNLLIRLKDRFEDKFRYDEDGVPRVWKPEDDIDAIFRKAREHALKLL 558 (742)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhCcCCCCCCCCCCCHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999995 99999999999999999999999999999999999999999999999
Q ss_pred hhHhheecCCCCccchhhhhhhccCCCCCccccCCCCCCCCCCCCccCCCCCCCcccCHHHHHHHHHHHHhhhhHHHHHh
Q 003528 587 SVMAAIRLDDETDNIESTLTLALVDSPSNAATNRSITNHDPLASSTWEQVPSSKTLITPVQCKSLWRQFKSETEYSVTQA 666 (813)
Q Consensus 587 ~~l~~~rl~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ll~~~~~~~~~~~F~~~~~~~~~~A 666 (813)
|+||++||+++++++|+++.....+......++++..+.||+++++|+++++++|||||.||++||+||+++++++|+||
T Consensus 559 ~vLa~iRL~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~l~~~~~~~~~~~~~lls~~~~~~i~~~Fk~~~~~~~~eA 638 (742)
T PF05879_consen 559 PVLAIIRLSDGSEIIPDVDISSLEPASSSPGSSESISAIDPLDSSEWEEVDEFATLLSESQCKSIWRQFKREIDYTYVEA 638 (742)
T ss_pred HHHHhhhccCCcccCcccchhhccccCcCcccccccccccccccccccccccceEeccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987644333332221222234556799999999999999999999999999999999999999987
Q ss_pred hHHHHHhhhcCCCCCcHHHHHHHHHhchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhh
Q 003528 667 ISAQEANKRNNNWLPPPWAIAAMMVLGFNEFMTLLRNPLYLGFIFIGYLLIKALWVQLDISGEFRNGALPGLISLSTKFL 746 (813)
Q Consensus 667 ~~~~ea~r~~~~~~iP~w~~~~l~vLGwNE~m~vlrnPl~~~~~~~~~~~~~~~~~ql~~~~~~~~g~~~~~~~~s~~~~ 746 (813)
++.+.+++++||+|||++|+||||||||+||||||||+++|++++++|++| ||||.|+ +.+++
T Consensus 639 ----krs~~~~~~~iP~w~~~ll~vLGwNE~m~vLrnPl~~~l~li~~~~~~~~~-~l~l~~p------------~~~v~ 701 (742)
T PF05879_consen 639 ----KRSIISSNTQIPPWMYLLLLVLGWNEFMAVLRNPLYFTLLLILGGGFYVLY-QLNLWGP------------AIKVV 701 (742)
T ss_pred ----HHHHhcCCCCCCHHHHHHHHHHhHHHHHHHHHChHHHHHHHHHHHHHHHHH-HhcchhH------------HHHHH
Confidence 445558999999999999999999999999999999999999999999999 9999995 56889
Q ss_pred HHHHHHHHHHHhcCCCCCCC
Q 003528 747 PTVMNLLKKLAEEGQIPATN 766 (813)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~ 766 (813)
|++|+.+++++.++.....+
T Consensus 702 ~~~~~~~~~~~ke~l~~~~~ 721 (742)
T PF05879_consen 702 PTAMNEVKRLAKEKLREFLE 721 (742)
T ss_pred HHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999866
No 3
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-34 Score=289.07 Aligned_cols=180 Identities=21% Similarity=0.209 Sum_probs=146.5
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee-----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----------- 76 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----------- 76 (813)
++|+++|++|+|+. ..+|++||+++ .+|++++|+|||||||||||+||+||.. |++|++.
T Consensus 1 ~mi~i~~l~K~fg~---~~VLkgi~l~v--~~Gevv~iiGpSGSGKSTlLRclN~LE~----~~~G~I~i~g~~~~~~~~ 71 (240)
T COG1126 1 MMIEIKNLSKSFGD---KEVLKGISLSV--EKGEVVVIIGPSGSGKSTLLRCLNGLEE----PDSGSITVDGEDVGDKKD 71 (240)
T ss_pred CeEEEEeeeEEeCC---eEEecCcceeE--cCCCEEEEECCCCCCHHHHHHHHHCCcC----CCCceEEECCEeccchhh
Confidence 37999999999987 78999999999 5899999999999999999999999998 9999832
Q ss_pred -----eccceecccccCCCchhHHHHhh--------CCCccccccchH--------------------HHHHHHHHHHHH
Q 003528 77 -----TTKGIWMARCAGIEPCTLIMDLE--------GTDGRERGEDDT--------------------AFEKQSALFALA 123 (813)
Q Consensus 77 -----~~~g~~~~~~~~~e~~~~vld~~--------g~~~~e~~~~~~--------------------~~erQrv~iA~A 123 (813)
...|++||+.. ..+..++++|. |.+..+..+... .+|+|||+||||
T Consensus 72 ~~~~R~~vGmVFQ~fn-LFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARA 150 (240)
T COG1126 72 ILKLRRKVGMVFQQFN-LFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARA 150 (240)
T ss_pred HHHHHHhcCeeccccc-ccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHH
Confidence 12456676653 45566666655 333332222111 129999999999
Q ss_pred HH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccc
Q 003528 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (813)
Q Consensus 124 La---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e 200 (813)
|+ +++|+|||||+|||+- ..+|++++++|+++ |.|+|+|||++.++...+++++ .++.|+|+.+|+|++
T Consensus 151 LaM~P~vmLFDEPTSALDPEl------v~EVL~vm~~LA~e-GmTMivVTHEM~FAr~Vadrvi-Fmd~G~iie~g~p~~ 222 (240)
T COG1126 151 LAMDPKVMLFDEPTSALDPEL------VGEVLDVMKDLAEE-GMTMIIVTHEMGFAREVADRVI-FMDQGKIIEEGPPEE 222 (240)
T ss_pred HcCCCCEEeecCCcccCCHHH------HHHHHHHHHHHHHc-CCeEEEEechhHHHHHhhheEE-EeeCCEEEEecCHHH
Confidence 99 9999999999999999 99999999999986 9999999999999987655555 455599999998888
Q ss_pred ccCCc
Q 003528 201 AHMET 205 (813)
Q Consensus 201 ~~~~~ 205 (813)
+|.++
T Consensus 223 ~f~~p 227 (240)
T COG1126 223 FFDNP 227 (240)
T ss_pred HhcCC
Confidence 77553
No 4
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.98 E-value=8.3e-33 Score=290.70 Aligned_cols=197 Identities=19% Similarity=0.191 Sum_probs=157.8
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee-----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----------- 76 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----------- 76 (813)
++++++|+++.|++ +.+|+++||++ .+|++++|+||||||||||||+|+|+++ |.+|++.
T Consensus 1 ~~L~~~~ls~~y~~---~~il~~ls~~i--~~G~i~~iiGpNG~GKSTLLk~l~g~l~----p~~G~V~l~g~~i~~~~~ 71 (258)
T COG1120 1 MMLEVENLSFGYGG---KPILDDLSFSI--PKGEITGILGPNGSGKSTLLKCLAGLLK----PKSGEVLLDGKDIASLSP 71 (258)
T ss_pred CeeEEEEEEEEECC---eeEEecceEEe--cCCcEEEEECCCCCCHHHHHHHHhccCC----CCCCEEEECCCchhhcCH
Confidence 36999999999987 79999999999 5899999999999999999999999998 9999831
Q ss_pred ---eccceecccccCCCchhHHHHhhCCCcc--------cccc-----------------------chHHHHHHHHHHHH
Q 003528 77 ---TTKGIWMARCAGIEPCTLIMDLEGTDGR--------ERGE-----------------------DDTAFEKQSALFAL 122 (813)
Q Consensus 77 ---~~~g~~~~~~~~~e~~~~vld~~g~~~~--------e~~~-----------------------~~~~~erQrv~iA~ 122 (813)
...-.++++.......++|.|...+.+. ...+ ....+|||||.||+
T Consensus 72 kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iAr 151 (258)
T COG1120 72 KELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIAR 151 (258)
T ss_pred HHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHH
Confidence 0111333333333334444444321110 0001 11123999999999
Q ss_pred HHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcc
Q 003528 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (813)
Q Consensus 123 ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~ 199 (813)
||+ ++|||||||+.||..+ +-+++++++++.+++|.|+|+|+||++.+.++|++.+++.+ |+|++.|+|.
T Consensus 152 ALaQ~~~iLLLDEPTs~LDi~~------Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~-G~i~a~G~p~ 224 (258)
T COG1120 152 ALAQETPILLLDEPTSHLDIAH------QIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKD-GKIVAQGTPE 224 (258)
T ss_pred HHhcCCCEEEeCCCccccCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEEC-CeEEeecCcc
Confidence 999 9999999999999999 99999999999988899999999999999988877777766 9999999999
Q ss_pred cccCCccchhhhccccccccc
Q 003528 200 QAHMETPLSEFFNVEVVALSS 220 (813)
Q Consensus 200 e~~~~~~l~d~f~~~~~~lp~ 220 (813)
+++....+.+.|+++...+.+
T Consensus 225 evlT~e~l~~Vygv~~~~~~~ 245 (258)
T COG1120 225 EVLTEENLREVYGVDADVIED 245 (258)
T ss_pred hhcCHHHHHHHhCCceEEEEc
Confidence 999999999999998765543
No 5
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3e-31 Score=277.74 Aligned_cols=188 Identities=17% Similarity=0.192 Sum_probs=151.5
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ---------- 76 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q---------- 76 (813)
+++|+++|+++.|++ .++|+||||++ .+|++++|+||||||||||+|+|.|+++ |.+|+..
T Consensus 2 ~~~i~v~nl~v~y~~---~~vl~~i~l~v--~~G~~~~iiGPNGaGKSTLlK~iLGll~----p~~G~i~~~g~~~~~~~ 72 (254)
T COG1121 2 MPMIEVENLTVSYGN---RPVLEDISLSV--EKGEITALIGPNGAGKSTLLKAILGLLK----PSSGEIKIFGKPVRKRR 72 (254)
T ss_pred CcEEEEeeeEEEECC---EeeeeccEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCCc----CCcceEEEccccccccc
Confidence 467999999999986 36999999999 5899999999999999999999999998 9999943
Q ss_pred --eccceeccccc--CCCchhHHHHhhCCCccccc-----------cchH--------------------HHHHHHHHHH
Q 003528 77 --TTKGIWMARCA--GIEPCTLIMDLEGTDGRERG-----------EDDT--------------------AFEKQSALFA 121 (813)
Q Consensus 77 --~~~g~~~~~~~--~~e~~~~vld~~g~~~~e~~-----------~~~~--------------------~~erQrv~iA 121 (813)
...| |+++.. ....+++|.|+..+....+. +.+. .+|+|||.||
T Consensus 73 ~~~~Ig-YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lA 151 (254)
T COG1121 73 KRLRIG-YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLA 151 (254)
T ss_pred cCCeEE-EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHH
Confidence 1233 444433 24566777777644311110 1111 1299999999
Q ss_pred HHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCc
Q 003528 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (813)
Q Consensus 122 ~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~ 198 (813)
|||+ ++||||||++|+|+.+ ...++++|.+++++ |+|||+||||++.+...+++++ +.+ +++...|++
T Consensus 152 RAL~~~p~lllLDEP~~gvD~~~------~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi-~Ln-~~~~~~G~~ 222 (254)
T COG1121 152 RALAQNPDLLLLDEPFTGVDVAG------QKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVI-CLN-RHLIASGPP 222 (254)
T ss_pred HHhccCCCEEEecCCcccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEE-EEc-CeeEeccCh
Confidence 9999 9999999999999999 99999999999988 9999999999998887665554 445 799999999
Q ss_pred ccccCCccchhhhcc
Q 003528 199 PQAHMETPLSEFFNV 213 (813)
Q Consensus 199 ~e~~~~~~l~d~f~~ 213 (813)
.++++...+...|..
T Consensus 223 ~~~~~~~~l~~~~g~ 237 (254)
T COG1121 223 EEVLTEENLEKAFGG 237 (254)
T ss_pred hhccCHHHHHHHhCc
Confidence 999888777777763
No 6
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=1.5e-30 Score=266.68 Aligned_cols=190 Identities=16% Similarity=0.150 Sum_probs=148.8
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCee-----------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS----------- 75 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~----------- 75 (813)
.+.|++++++++|++ +.++++++|++ ++|++++|+||+|||||||||+|.|+++ |++|++
T Consensus 6 ~~~I~vr~v~~~fG~---~~Ild~v~l~V--~~Gei~~iiGgSGsGKStlLr~I~Gll~----P~~GeI~i~G~~i~~ls 76 (263)
T COG1127 6 EPLIEVRGVTKSFGD---RVILDGVDLDV--PRGEILAILGGSGSGKSTLLRLILGLLR----PDKGEILIDGEDIPQLS 76 (263)
T ss_pred cceEEEeeeeeecCC---EEEecCceeee--cCCcEEEEECCCCcCHHHHHHHHhccCC----CCCCeEEEcCcchhccC
Confidence 568999999999987 89999999999 6899999999999999999999999998 999982
Q ss_pred -------eeccceecccccCCCchhHHHHhhCCCcccc-----------------------------ccchHHHHHHHHH
Q 003528 76 -------QTTKGIWMARCAGIEPCTLIMDLEGTDGRER-----------------------------GEDDTAFEKQSAL 119 (813)
Q Consensus 76 -------q~~~g~~~~~~~~~e~~~~vld~~g~~~~e~-----------------------------~~~~~~~erQrv~ 119 (813)
....|+.||+.. ....+.|.||.+.+-++. ......+|++||+
T Consensus 77 ~~~~~~ir~r~GvlFQ~gA-LFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRva 155 (263)
T COG1127 77 EEELYEIRKRMGVLFQQGA-LFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVA 155 (263)
T ss_pred HHHHHHHHhheeEEeeccc-cccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHH
Confidence 122455555432 223333334333321110 1111223999999
Q ss_pred HHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEec
Q 003528 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (813)
Q Consensus 120 iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g 196 (813)
||||++ ++|++||||+||||.. ...+-++++++.+.-|.|+++||||++.+...+++++++.+ |+|+..|
T Consensus 156 LARAialdPell~~DEPtsGLDPI~------a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~-gkv~~~G 228 (263)
T COG1127 156 LARAIALDPELLFLDEPTSGLDPIS------AGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLAD-GKVIAEG 228 (263)
T ss_pred HHHHHhcCCCEEEecCCCCCCCcch------HHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeC-CEEEEeC
Confidence 999999 9999999999999999 99999999999998999999999999888766666666666 9999999
Q ss_pred CcccccC--Cccchhhhcc
Q 003528 197 PKPQAHM--ETPLSEFFNV 213 (813)
Q Consensus 197 ~~~e~~~--~~~l~d~f~~ 213 (813)
++.++.+ +.-+.+||+.
T Consensus 229 t~~el~~sd~P~v~qf~~G 247 (263)
T COG1127 229 TPEELLASDDPWVRQFFNG 247 (263)
T ss_pred CHHHHHhCCCHHHHHHhcC
Confidence 9988764 3445555543
No 7
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=7.4e-31 Score=277.11 Aligned_cols=184 Identities=15% Similarity=0.172 Sum_probs=158.4
Q ss_pred cEEEEeeeEEeccc--cccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCee-----------
Q 003528 9 STQLIDGDGTFNVS--GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS----------- 75 (813)
Q Consensus 9 ~Iel~dls~~y~~~--~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~----------- 75 (813)
||++++++|.|... +...+|++|||++ .+|+|+||+|.||||||||+++|++|.. |++|+.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I--~~GeI~GIIG~SGAGKSTLiR~iN~Le~----PtsG~v~v~G~di~~l~ 74 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEI--PKGEIFGIIGYSGAGKSTLLRLINLLER----PTSGSVFVDGQDLTALS 74 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEE--cCCcEEEEEcCCCCcHHHHHHHHhccCC----CCCceEEEcCEecccCC
Confidence 68999999999752 1246999999999 5899999999999999999999999998 999982
Q ss_pred -------eeccceecccccC------CCchhHHHHhhCCCccccccchHH--------------------HHHHHHHHHH
Q 003528 76 -------QTTKGIWMARCAG------IEPCTLIMDLEGTDGRERGEDDTA--------------------FEKQSALFAL 122 (813)
Q Consensus 76 -------q~~~g~~~~~~~~------~e~~~~vld~~g~~~~e~~~~~~~--------------------~erQrv~iA~ 122 (813)
+...|++||+... .+|+.+.++..|.+..++..++.. +|||||+|||
T Consensus 75 ~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIAR 154 (339)
T COG1135 75 EAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIAR 154 (339)
T ss_pred hHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHH
Confidence 2346778877643 568888888888766554444332 2999999999
Q ss_pred HHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcc
Q 003528 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (813)
Q Consensus 123 ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~ 199 (813)
||+ +|||.||||++|||.+ .+.|+++++++.++.|.||++|||.|+.+...|+++.+|.. |+|++.|+..
T Consensus 155 ALa~~P~iLL~DEaTSALDP~T------T~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~-G~lvE~G~v~ 227 (339)
T COG1135 155 ALANNPKILLCDEATSALDPET------TQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQ-GRLVEEGTVS 227 (339)
T ss_pred HHhcCCCEEEecCccccCChHH------HHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeC-CEEEEeccHH
Confidence 999 9999999999999999 99999999999999999999999999999988888887777 9999999999
Q ss_pred cccCCc
Q 003528 200 QAHMET 205 (813)
Q Consensus 200 e~~~~~ 205 (813)
++|.++
T Consensus 228 ~vF~~P 233 (339)
T COG1135 228 EVFANP 233 (339)
T ss_pred HhhcCc
Confidence 888654
No 8
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.96 E-value=1.5e-30 Score=267.69 Aligned_cols=180 Identities=15% Similarity=0.108 Sum_probs=149.6
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCee-------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS------------- 75 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~------------- 75 (813)
||+++|++|.|++ +.+++++||++ ..|++++++|||||||||+|++|+++.. |++|++
T Consensus 1 MI~~~nvsk~y~~---~~av~~v~l~I--~~gef~vliGpSGsGKTTtLkMINrLie----pt~G~I~i~g~~i~~~d~~ 71 (309)
T COG1125 1 MIEFENVSKRYGN---KKAVDDVNLTI--EEGEFLVLIGPSGSGKTTTLKMINRLIE----PTSGEILIDGEDISDLDPV 71 (309)
T ss_pred CceeeeeehhcCC---ceeeeeeeEEe--cCCeEEEEECCCCCcHHHHHHHHhcccC----CCCceEEECCeecccCCHH
Confidence 6899999999986 78999999999 5899999999999999999999999998 999982
Q ss_pred --eecccee------cccccCCCchhHHHHhhCCCccccccchHH----------------------HHHHHHHHHHHHH
Q 003528 76 --QTTKGIW------MARCAGIEPCTLIMDLEGTDGRERGEDDTA----------------------FEKQSALFALAVS 125 (813)
Q Consensus 76 --q~~~g~~------~~~~~~~e~~~~vld~~g~~~~e~~~~~~~----------------------~erQrv~iA~ALa 125 (813)
+...|+. |++.+..+|+.++....|.+..+...+..+ +|+|||.+||||+
T Consensus 72 ~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 72 ELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALA 151 (309)
T ss_pred HHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHh
Confidence 1223433 333344566666666666654433222211 2999999999999
Q ss_pred ---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccccc
Q 003528 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (813)
Q Consensus 126 ---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~ 202 (813)
+|||+|||+++|||.+ ++.+.+.++++.++.|+||||||||++++...++++++|.+ |+|+..++|.+++
T Consensus 152 adP~ilLMDEPFgALDpI~------R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~-G~i~Q~~~P~~il 224 (309)
T COG1125 152 ADPPILLMDEPFGALDPIT------RKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDA-GEIVQYDTPDEIL 224 (309)
T ss_pred cCCCeEeecCCccccChhh------HHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecC-CeEEEeCCHHHHH
Confidence 9999999999999999 99999999999999999999999999999877777777665 9999999999987
Q ss_pred CC
Q 003528 203 ME 204 (813)
Q Consensus 203 ~~ 204 (813)
.+
T Consensus 225 ~~ 226 (309)
T COG1125 225 AN 226 (309)
T ss_pred hC
Confidence 64
No 9
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=6.7e-30 Score=261.23 Aligned_cols=189 Identities=18% Similarity=0.194 Sum_probs=150.4
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCee------------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS------------ 75 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~------------ 75 (813)
++|+++|+++.|.++ +.+|++|||++ ++||+|+|+||+||||||||++|+|+.. |++|+.
T Consensus 2 ~~i~~~nl~k~yp~~--~~aL~~Vnl~I--~~GE~VaiIG~SGaGKSTLLR~lngl~d----~t~G~i~~~g~~i~~~~~ 73 (258)
T COG3638 2 MMIEVKNLSKTYPGG--HQALKDVNLEI--NQGEMVAIIGPSGAGKSTLLRSLNGLVD----PTSGEILFNGVQITKLKG 73 (258)
T ss_pred ceEEEeeeeeecCCC--ceeeeeEeEEe--CCCcEEEEECCCCCcHHHHHHHHhcccC----CCcceEEecccchhccch
Confidence 479999999999543 89999999999 5899999999999999999999999886 999982
Q ss_pred ------eeccceecccccCCCchhHHHHh---------------hCCCccccccc--------------------hHHHH
Q 003528 76 ------QTTKGIWMARCAGIEPCTLIMDL---------------EGTDGRERGED--------------------DTAFE 114 (813)
Q Consensus 76 ------q~~~g~~~~~~~~~e~~~~vld~---------------~g~~~~e~~~~--------------------~~~~e 114 (813)
+...|+++++.... +...++.+ +|+...+.... ...+|
T Consensus 74 k~lr~~r~~iGmIfQ~~nLv-~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQ 152 (258)
T COG3638 74 KELRKLRRDIGMIFQQFNLV-PRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQ 152 (258)
T ss_pred HHHHHHHHhceeEeccCCcc-cccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcch
Confidence 23456777765432 22233332 23332221111 11129
Q ss_pred HHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCe
Q 003528 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (813)
Q Consensus 115 rQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~Gk 191 (813)
+|||+|||||+ +++|.|||+++|||.+ .+.|++.+++++++.|.|+|+..|+++.+..+|++++-+.+ |+
T Consensus 153 QQRVaIARaL~Q~pkiILADEPvasLDp~~------a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~-G~ 225 (258)
T COG3638 153 QQRVAIARALVQQPKIILADEPVASLDPES------AKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKA-GR 225 (258)
T ss_pred hHHHHHHHHHhcCCCEEecCCcccccChhh------HHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecC-Cc
Confidence 99999999999 9999999999999999 99999999999999999999999999999987777776666 99
Q ss_pred EEEecCcccccCCccchhhhcc
Q 003528 192 IWDSVPKPQAHMETPLSEFFNV 213 (813)
Q Consensus 192 I~~~g~~~e~~~~~~l~d~f~~ 213 (813)
|+.+|++.+ +....+.+.|+.
T Consensus 226 ivfDg~~~e-l~~~~~~~iYg~ 246 (258)
T COG3638 226 IVFDGPASE-LTDEALDEIYGN 246 (258)
T ss_pred EEEeCChhh-hhHHHHHHHhcc
Confidence 999999887 555566666654
No 10
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=6.2e-30 Score=264.98 Aligned_cols=166 Identities=19% Similarity=0.244 Sum_probs=131.2
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----------e
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----------T 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----------~ 77 (813)
.++.++++++.|+. ..+|+++||++ .+|++++|+||||||||||||+|+|+.. |++|+.. .
T Consensus 2 ~~l~i~~v~~~f~~---~~vl~~i~L~v--~~GEfvsilGpSGcGKSTLLriiAGL~~----p~~G~V~~~g~~v~~p~~ 72 (248)
T COG1116 2 ALLEIEGVSKSFGG---VEVLEDINLSV--EKGEFVAILGPSGCGKSTLLRLIAGLEK----PTSGEVLLDGRPVTGPGP 72 (248)
T ss_pred ceEEEEeeEEEeCc---eEEeccceeEE--CCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCcccCCCCC
Confidence 46899999999987 78999999999 5899999999999999999999999998 9999832 1
Q ss_pred ccceeccccc------CCCchhHHHHhhCCCccccccchH--------------------HHHHHHHHHHHHHH---hHh
Q 003528 78 TKGIWMARCA------GIEPCTLIMDLEGTDGRERGEDDT--------------------AFEKQSALFALAVS---DIV 128 (813)
Q Consensus 78 ~~g~~~~~~~------~~e~~~~vld~~g~~~~e~~~~~~--------------------~~erQrv~iA~ALa---dvL 128 (813)
..++++|+.. ..+|+.+.++..|....++.+... .+|||||+|||||+ ++|
T Consensus 73 ~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lL 152 (248)
T COG1116 73 DIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLL 152 (248)
T ss_pred CEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEE
Confidence 2345555433 233444444443433322222111 12999999999999 999
Q ss_pred hhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeec
Q 003528 129 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (813)
Q Consensus 129 LLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~ 188 (813)
|||||+++||..+ +..+.+.+.++.++.++|++|||||++++-..+++++++.+
T Consensus 153 LlDEPFgALDalT------R~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~ 206 (248)
T COG1116 153 LLDEPFGALDALT------REELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSN 206 (248)
T ss_pred EEcCCcchhhHHH------HHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecC
Confidence 9999999999999 99999999999998899999999999998866666655554
No 11
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.9e-29 Score=257.22 Aligned_cols=185 Identities=15% Similarity=0.123 Sum_probs=144.0
Q ss_pred CccEEEEeeeEEecccc-ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee---------
Q 003528 7 CCSTQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ--------- 76 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~-~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q--------- 76 (813)
+++++++|+++.|..+. ...++++|||++ .+|+++||+|++|||||||.++|+|+.. |++|++.
T Consensus 1 ~~~l~v~nl~~~y~~~~~~~~~l~~VS~~i--~~Ge~lgivGeSGsGKSTL~r~l~Gl~~----p~~G~I~~~G~~~~~~ 74 (252)
T COG1124 1 MTLLSVRNLSIVYGGGKFAFHALNNVSLEI--ERGETLGIVGESGSGKSTLARLLAGLEK----PSSGSILLDGKPLAPK 74 (252)
T ss_pred CceEEEeceEEEecCCcchhhhhcceeEEe--cCCCEEEEEcCCCCCHHHHHHHHhcccC----CCCceEEECCcccCcc
Confidence 35799999999998731 114999999999 5899999999999999999999999998 8999831
Q ss_pred -------eccceecccccC-CCchhHHH-----------------------HhhCCCccc---cccchHHHHHHHHHHHH
Q 003528 77 -------TTKGIWMARCAG-IEPCTLIM-----------------------DLEGTDGRE---RGEDDTAFEKQSALFAL 122 (813)
Q Consensus 77 -------~~~g~~~~~~~~-~e~~~~vl-----------------------d~~g~~~~e---~~~~~~~~erQrv~iA~ 122 (813)
....++||+... ..+...+. +.+|++..- +......+|+||++|||
T Consensus 75 ~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIAR 154 (252)
T COG1124 75 KRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIAR 154 (252)
T ss_pred ccchhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHH
Confidence 112245555433 23333332 223333211 11112234999999999
Q ss_pred HHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcc
Q 003528 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (813)
Q Consensus 123 ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~ 199 (813)
||+ ++||+||||++||... +..|++++.++.++++.|+||||||+..+...|+++++|.+ |+|++.++..
T Consensus 155 AL~~~PklLIlDEptSaLD~si------Qa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~-G~ivE~~~~~ 227 (252)
T COG1124 155 ALIPEPKLLILDEPTSALDVSV------QAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDN-GQIVEIGPTE 227 (252)
T ss_pred HhccCCCEEEecCchhhhcHHH------HHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeC-CeEEEeechh
Confidence 999 9999999999999999 99999999999999999999999999999887777666655 9999999988
Q ss_pred cccCC
Q 003528 200 QAHME 204 (813)
Q Consensus 200 e~~~~ 204 (813)
+++..
T Consensus 228 ~l~~~ 232 (252)
T COG1124 228 ELLSH 232 (252)
T ss_pred hhhcC
Confidence 87643
No 12
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.7e-29 Score=261.96 Aligned_cols=182 Identities=18% Similarity=0.149 Sum_probs=150.9
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee-----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----------- 76 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----------- 76 (813)
+++.+.|+++.|.++ ..+|+++||.+ .+|++++|+|+||||||||+++|+|+.+ |++|+..
T Consensus 2 ~~i~~~~l~~~y~~~--~~~l~~v~~~i--~~Ge~~~i~G~nGsGKSTL~~~l~GLl~----p~~G~v~~~g~~~~~~~~ 73 (235)
T COG1122 2 RMIEAENLSFRYPGR--KAALKDVSLEI--EKGERVLLIGPNGSGKSTLLKLLNGLLK----PTSGEVLVDGLDTSSEKS 73 (235)
T ss_pred ceEEEEEEEEEcCCC--ceeeeeeEEEE--CCCCEEEEECCCCCCHHHHHHHHcCcCc----CCCCEEEECCeeccchhh
Confidence 479999999999873 68999999999 5899999999999999999999999998 8999841
Q ss_pred -----eccceecccccC-------CCchhHHHHhhCCCccccccchHH--------------------HHHHHHHHHHHH
Q 003528 77 -----TTKGIWMARCAG-------IEPCTLIMDLEGTDGRERGEDDTA--------------------FEKQSALFALAV 124 (813)
Q Consensus 77 -----~~~g~~~~~~~~-------~e~~~~vld~~g~~~~e~~~~~~~--------------------~erQrv~iA~AL 124 (813)
...|+++|.... .+++.|.+.+.|.+..+...+... +|||||+||.+|
T Consensus 74 ~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vL 153 (235)
T COG1122 74 LLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVL 153 (235)
T ss_pred HHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHH
Confidence 234666666532 456777777777765442222111 299999999999
Q ss_pred H---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccc
Q 003528 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (813)
Q Consensus 125 a---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~ 201 (813)
+ ++|||||||++||+.. .+.+++.++++.++.|+|+|++|||++.+...+++++++.+ |+++.+|++.++
T Consensus 154 a~~P~iliLDEPta~LD~~~------~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~-G~i~~~g~p~~i 226 (235)
T COG1122 154 AMGPEILLLDEPTAGLDPKG------RRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDD-GKILADGDPAEI 226 (235)
T ss_pred HcCCCEEEEcCCCCCCCHHH------HHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEEC-CEEeecCCHHHH
Confidence 9 9999999999999999 99999999999987789999999999998876666666655 999999998777
Q ss_pred cCC
Q 003528 202 HME 204 (813)
Q Consensus 202 ~~~ 204 (813)
+.+
T Consensus 227 ~~~ 229 (235)
T COG1122 227 FND 229 (235)
T ss_pred hhh
Confidence 654
No 13
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.96 E-value=7.6e-29 Score=271.19 Aligned_cols=181 Identities=14% Similarity=0.134 Sum_probs=147.4
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCee-----------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS----------- 75 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~----------- 75 (813)
++.|+++|++|.|++ ..+++|+||++ .+|++++|+|||||||||||++|+|+.. |++|++
T Consensus 3 ~~~l~i~~v~k~yg~---~~av~~isl~i--~~Gef~~lLGPSGcGKTTlLR~IAGfe~----p~~G~I~l~G~~i~~lp 73 (352)
T COG3842 3 KPALEIRNVSKSFGD---FTAVDDISLDI--KKGEFVTLLGPSGCGKTTLLRMIAGFEQ----PSSGEILLDGEDITDVP 73 (352)
T ss_pred CceEEEEeeeeecCC---eeEEecceeee--cCCcEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCEECCCCC
Confidence 457999999999986 78999999999 5899999999999999999999999998 999983
Q ss_pred --eeccceecccccCCCchhHHHHhhCCCcc--------ccccchHH--------------------HHHHHHHHHHHHH
Q 003528 76 --QTTKGIWMARCAGIEPCTLIMDLEGTDGR--------ERGEDDTA--------------------FEKQSALFALAVS 125 (813)
Q Consensus 76 --q~~~g~~~~~~~~~e~~~~vld~~g~~~~--------e~~~~~~~--------------------~erQrv~iA~ALa 125 (813)
+...|++||.. .+.+.+.|.+|++.+-. +..+++.. +|+|||++||||+
T Consensus 74 p~kR~ig~VFQ~Y-ALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~ 152 (352)
T COG3842 74 PEKRPIGMVFQSY-ALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALV 152 (352)
T ss_pred hhhcccceeecCc-ccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhh
Confidence 12345555543 35566666666533211 11111111 2999999999999
Q ss_pred ---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccccc
Q 003528 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (813)
Q Consensus 126 ---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~ 202 (813)
++||||||.++||..- +..+...++++.++.|+|.|+||||.+++...++++++|.+ |+|...|+|.+++
T Consensus 153 ~~P~vLLLDEPlSaLD~kL------R~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~-G~I~Q~gtP~eiY 225 (352)
T COG3842 153 PEPKVLLLDEPLSALDAKL------REQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMND-GRIEQVGTPEEIY 225 (352)
T ss_pred cCcchhhhcCcccchhHHH------HHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccC-CceeecCCHHHHh
Confidence 8999999999999998 99999999999998999999999999988776777776666 9999999999987
Q ss_pred CC
Q 003528 203 ME 204 (813)
Q Consensus 203 ~~ 204 (813)
..
T Consensus 226 ~~ 227 (352)
T COG3842 226 ER 227 (352)
T ss_pred hC
Confidence 54
No 14
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1.3e-28 Score=267.96 Aligned_cols=181 Identities=17% Similarity=0.165 Sum_probs=144.1
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ---------- 76 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q---------- 76 (813)
|.+|+++|++|.|++ ..+++++||++ .+|++++|+||||||||||||+|+|+.. |++|++.
T Consensus 1 M~~i~l~~v~K~yg~---~~~l~~i~l~i--~~Gef~vllGPSGcGKSTlLr~IAGLe~----~~~G~I~i~g~~vt~l~ 71 (338)
T COG3839 1 MAELELKNVRKSFGS---FEVLKDVNLDI--EDGEFVVLLGPSGCGKSTLLRMIAGLEE----PTSGEILIDGRDVTDLP 71 (338)
T ss_pred CcEEEEeeeEEEcCC---ceeeecceEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCEECCCCC
Confidence 347999999999986 23999999999 5899999999999999999999999998 9999931
Q ss_pred ---eccceecccccCCCchhHHHHhh-------CCCccccccchH--------------------HHHHHHHHHHHHHH-
Q 003528 77 ---TTKGIWMARCAGIEPCTLIMDLE-------GTDGRERGEDDT--------------------AFEKQSALFALAVS- 125 (813)
Q Consensus 77 ---~~~g~~~~~~~~~e~~~~vld~~-------g~~~~e~~~~~~--------------------~~erQrv~iA~ALa- 125 (813)
...+++||.. ...+.+.|.+|. +.+..+...++. .+|||||++||||+
T Consensus 72 P~~R~iamVFQ~y-ALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr 150 (338)
T COG3839 72 PEKRGIAMVFQNY-ALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVR 150 (338)
T ss_pred hhHCCEEEEeCCc-cccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhc
Confidence 1223444432 334444444444 443333222211 12999999999999
Q ss_pred --hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccccC
Q 003528 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (813)
Q Consensus 126 --dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~~ 203 (813)
+++|+|||+++||..- +..+...++++.++.|.|+|+||||..++...+++++++.+ |+|...|+|.+++.
T Consensus 151 ~P~v~L~DEPlSnLDa~l------R~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~-G~i~Q~g~p~ely~ 223 (338)
T COG3839 151 KPKVFLLDEPLSNLDAKL------RVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMND-GRIQQVGTPLELYE 223 (338)
T ss_pred CCCEEEecCchhHhhHHH------HHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeC-CeeeecCChHHHhh
Confidence 9999999999999998 99999999999988899999999999888777777777775 99999999999875
Q ss_pred C
Q 003528 204 E 204 (813)
Q Consensus 204 ~ 204 (813)
.
T Consensus 224 ~ 224 (338)
T COG3839 224 R 224 (338)
T ss_pred C
Confidence 4
No 15
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.95 E-value=7.4e-29 Score=247.70 Aligned_cols=178 Identities=12% Similarity=0.131 Sum_probs=144.3
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCee-------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS------------- 75 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~------------- 75 (813)
||++.+++|+|++ ...++++|||.+ .+|+|++|+|||||||||+|++|++++. |++|..
T Consensus 1 Ml~v~~l~K~y~~--~v~AvrdVSF~a--e~Gei~GlLG~NGAGKTT~LRmiatlL~----P~~G~v~idg~d~~~~p~~ 72 (245)
T COG4555 1 MLEVTDLTKSYGS--KVQAVRDVSFEA--EEGEITGLLGENGAGKTTLLRMIATLLI----PDSGKVTIDGVDTVRDPSF 72 (245)
T ss_pred CeeeeehhhhccC--HHhhhhheeEEe--ccceEEEEEcCCCCCchhHHHHHHHhcc----CCCceEEEeecccccChHH
Confidence 6899999999987 356999999999 5899999999999999999999999998 999982
Q ss_pred -eeccceecc------cccCCCchhHHHHhhCCCccccccchH--------------------HHHHHHHHHHHHHH---
Q 003528 76 -QTTKGIWMA------RCAGIEPCTLIMDLEGTDGRERGEDDT--------------------AFEKQSALFALAVS--- 125 (813)
Q Consensus 76 -q~~~g~~~~------~~~~~e~~~~vld~~g~~~~e~~~~~~--------------------~~erQrv~iA~ALa--- 125 (813)
+...|+.+. +.++.+++.++..+.|+.+.+...+.. .+|||||.||+||+
T Consensus 73 vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P 152 (245)
T COG4555 73 VRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDP 152 (245)
T ss_pred HhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCC
Confidence 122333332 222346677777777766543221111 12999999999999
Q ss_pred hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccccc
Q 003528 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (813)
Q Consensus 126 dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~ 202 (813)
+++|+||||+|||... .+.+.+.+.+++.+ |.++||+||+++++...|++++++.. |+++..|+.+++.
T Consensus 153 ~i~vlDEP~sGLDi~~------~r~~~dfi~q~k~e-gr~viFSSH~m~EvealCDrvivlh~-Gevv~~gs~~~l~ 221 (245)
T COG4555 153 SILVLDEPTSGLDIRT------RRKFHDFIKQLKNE-GRAVIFSSHIMQEVEALCDRVIVLHK-GEVVLEGSIEALD 221 (245)
T ss_pred CeEEEcCCCCCccHHH------HHHHHHHHHHhhcC-CcEEEEecccHHHHHHhhheEEEEec-CcEEEcCCHHHHH
Confidence 9999999999999999 99999999999875 99999999999988877777666666 9999999988764
No 16
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=3.8e-28 Score=251.04 Aligned_cols=170 Identities=23% Similarity=0.267 Sum_probs=131.8
Q ss_pred cEEEEeeeEEecccc-ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCee------------
Q 003528 9 STQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS------------ 75 (813)
Q Consensus 9 ~Iel~dls~~y~~~~-~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~------------ 75 (813)
+++++|++|.|..+. ...+|+++||++ .+|++++|+||||||||||||+|.|+.. |++|.+
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i--~~Ge~vaI~GpSGSGKSTLLniig~ld~----pt~G~v~i~g~d~~~l~~ 74 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEI--EAGEFVAIVGPSGSGKSTLLNLLGGLDK----PTSGEVLINGKDLTKLSE 74 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEE--cCCCEEEEECCCCCCHHHHHHHHhcccC----CCCceEEECCEEcCcCCH
Confidence 478999999997521 247899999999 5899999999999999999999999998 899982
Q ss_pred -------eeccceecccccC------CCchhHHHHhhCCCcc------------------c---cccchHHHHHHHHHHH
Q 003528 76 -------QTTKGIWMARCAG------IEPCTLIMDLEGTDGR------------------E---RGEDDTAFEKQSALFA 121 (813)
Q Consensus 76 -------q~~~g~~~~~~~~------~e~~~~vld~~g~~~~------------------e---~~~~~~~~erQrv~iA 121 (813)
....|.+||.... .+|+.+.+.+.+.... . .......+|||||+||
T Consensus 75 ~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIA 154 (226)
T COG1136 75 KELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIA 154 (226)
T ss_pred HHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHH
Confidence 1234666665532 3344443333333221 0 0112223499999999
Q ss_pred HHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeE
Q 003528 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (813)
Q Consensus 122 ~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI 192 (813)
|||+ ++||.||||.+||..+ .+.|++++.++.++.|+|+|+||||...+. .+++++.+.+ |++
T Consensus 155 RAL~~~P~iilADEPTgnLD~~t------~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~d-G~~ 220 (226)
T COG1136 155 RALINNPKIILADEPTGNLDSKT------AKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKD-GKI 220 (226)
T ss_pred HHHhcCCCeEEeeCccccCChHH------HHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeC-Cee
Confidence 9999 9999999999999999 999999999999888999999999999888 3555556655 884
No 17
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.7e-28 Score=247.22 Aligned_cols=181 Identities=17% Similarity=0.179 Sum_probs=145.4
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCC-----Ce-------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFK-----GR------- 74 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~s-----G~------- 74 (813)
.+.++++|+++.|+. +.+|++||+.+ .++.|+++|||+||||||||++++.+.. ... |+
T Consensus 5 ~~~~~~~~l~~yYg~---~~aL~~i~l~i--~~~~VTAlIGPSGcGKST~LR~lNRmnd----l~~~~r~~G~v~~~g~n 75 (253)
T COG1117 5 IPAIEVRDLNLYYGD---KHALKDINLDI--PKNKVTALIGPSGCGKSTLLRCLNRMND----LIPGARVEGEVLLDGKN 75 (253)
T ss_pred cceeEecceeEEECc---hhhhccCceec--cCCceEEEECCCCcCHHHHHHHHHhhcc----cCcCceEEEEEEECCee
Confidence 357999999999987 88999999999 5899999999999999999999998864 333 44
Q ss_pred ----------eeeccceecccccC-----CCchhHHHHhhCCCccccccch------------------------HHHHH
Q 003528 75 ----------SQTTKGIWMARCAG-----IEPCTLIMDLEGTDGRERGEDD------------------------TAFEK 115 (813)
Q Consensus 75 ----------~q~~~g~~~~~~~~-----~e~~~~vld~~g~~~~e~~~~~------------------------~~~er 115 (813)
.+...|++||+++. ++|+.+.....|....+..+.+ ..+|+
T Consensus 76 i~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQ 155 (253)
T COG1117 76 IYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQ 155 (253)
T ss_pred ccCCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHH
Confidence 13456888888765 3455555555555431111111 01299
Q ss_pred HHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeE
Q 003528 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (813)
Q Consensus 116 Qrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI 192 (813)
||++|||||+ +||||||||++|||.+ ...|-+++.+|++ .-||++|||++..+.+..+...++.. |++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIs------T~kIEeLi~eLk~--~yTIviVTHnmqQAaRvSD~taFf~~-G~L 226 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPIS------TLKIEELITELKK--KYTIVIVTHNMQQAARVSDYTAFFYL-GEL 226 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchh------HHHHHHHHHHHHh--ccEEEEEeCCHHHHHHHhHhhhhhcc-cEE
Confidence 9999999999 9999999999999999 9999999999974 68999999999988887777777766 999
Q ss_pred EEecCcccccCCc
Q 003528 193 WDSVPKPQAHMET 205 (813)
Q Consensus 193 ~~~g~~~e~~~~~ 205 (813)
++.|++.++|.++
T Consensus 227 vE~g~T~~iF~~P 239 (253)
T COG1117 227 VEFGPTDKIFTNP 239 (253)
T ss_pred EEEcCHHhhhcCc
Confidence 9999999888654
No 18
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.95 E-value=1.9e-28 Score=242.87 Aligned_cols=173 Identities=16% Similarity=0.189 Sum_probs=145.7
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCee-------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS------------- 75 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~------------- 75 (813)
||+++|++|.|..+ ..+|++|||++ .+|+++-|+||||||||||||+|++... |+.|+.
T Consensus 1 mI~f~~V~k~Y~~g--~~aL~~vs~~i--~~Gef~fl~GpSGAGKSTllkLi~~~e~----pt~G~i~~~~~dl~~l~~~ 72 (223)
T COG2884 1 MIRFENVSKAYPGG--REALRDVSFHI--PKGEFVFLTGPSGAGKSTLLKLIYGEER----PTRGKILVNGHDLSRLKGR 72 (223)
T ss_pred CeeehhhhhhcCCC--chhhhCceEee--cCceEEEEECCCCCCHHHHHHHHHhhhc----CCCceEEECCeeccccccc
Confidence 68999999999874 77999999999 5899999999999999999999999998 999982
Q ss_pred -----eeccceeccccc------CCCchhHHHHhhCCCccccccchHH--------------------HHHHHHHHHHHH
Q 003528 76 -----QTTKGIWMARCA------GIEPCTLIMDLEGTDGRERGEDDTA--------------------FEKQSALFALAV 124 (813)
Q Consensus 76 -----q~~~g~~~~~~~------~~e~~~~vld~~g~~~~e~~~~~~~--------------------~erQrv~iA~AL 124 (813)
+...|++||... .++|+.+.+.+.|....+..+++.. +|+|||+||||+
T Consensus 73 ~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAi 152 (223)
T COG2884 73 EIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAI 152 (223)
T ss_pred ccchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHH
Confidence 234577776543 3678888888888876654443322 299999999999
Q ss_pred H---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecC
Q 003528 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (813)
Q Consensus 125 a---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~ 197 (813)
+ ++||.||||.+|||.. ...|++++.++... |+|||++|||.+.+... .++++..++|+++.+..
T Consensus 153 V~~P~vLlADEPTGNLDp~~------s~~im~lfeeinr~-GtTVl~ATHd~~lv~~~-~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 153 VNQPAVLLADEPTGNLDPDL------SWEIMRLFEEINRL-GTTVLMATHDLELVNRM-RHRVLALEDGRLVRDES 220 (223)
T ss_pred ccCCCeEeecCCCCCCChHH------HHHHHHHHHHHhhc-CcEEEEEeccHHHHHhc-cCcEEEEeCCEEEeccc
Confidence 9 9999999999999999 99999999999875 99999999999988764 45555556699987654
No 19
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=9.3e-28 Score=259.98 Aligned_cols=179 Identities=14% Similarity=0.126 Sum_probs=136.5
Q ss_pred CccEEEEeeeEEec-cccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee--------
Q 003528 7 CCSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT-------- 77 (813)
Q Consensus 7 ~~~Iel~dls~~y~-~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~-------- 77 (813)
+..+++.|++|.|+ . +.+|++|||++ .+|+++||+||||||||||||+|+|+.. |++|+..-
T Consensus 2 ~~~i~~~~l~k~~~~~---~~~l~~vs~~i--~~Gei~gllG~NGAGKTTllk~l~gl~~----p~~G~i~i~G~~~~~~ 72 (293)
T COG1131 2 IEVIEVRNLTKKYGGD---KTALDGVSFEV--EPGEIFGLLGPNGAGKTTLLKILAGLLK----PTSGEILVLGYDVVKE 72 (293)
T ss_pred CceeeecceEEEeCCC---CEEEeceeEEE--cCCeEEEEECCCCCCHHHHHHHHhCCcC----CCceEEEEcCEeCccC
Confidence 34689999999998 5 78999999999 5899999999999999999999999998 89998321
Q ss_pred ------ccceeccccc------CCCchhHHHHhhCC------------------Cc--cccccchHHHHHHHHHHHHHHH
Q 003528 78 ------TKGIWMARCA------GIEPCTLIMDLEGT------------------DG--RERGEDDTAFEKQSALFALAVS 125 (813)
Q Consensus 78 ------~~g~~~~~~~------~~e~~~~vld~~g~------------------~~--~e~~~~~~~~erQrv~iA~ALa 125 (813)
..|++.+... +.++..++....+. .. ..+......+||||+.||+||+
T Consensus 73 ~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~ 152 (293)
T COG1131 73 PAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALL 152 (293)
T ss_pred HHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHh
Confidence 1233333222 11222222222232 22 1111222334999999999999
Q ss_pred ---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccc
Q 003528 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (813)
Q Consensus 126 ---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~ 201 (813)
++|||||||+||||.. +..+.++++++.++.++|||++||.++++...|++++++ ++|+++..|++.+.
T Consensus 153 ~~P~lliLDEPt~GLDp~~------~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il-~~G~~~~~g~~~~l 224 (293)
T COG1131 153 HDPELLILDEPTSGLDPES------RREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIIL-NDGKIIAEGTPEEL 224 (293)
T ss_pred cCCCEEEECCCCcCCCHHH------HHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEE-eCCEEEEeCCHHHH
Confidence 9999999999999999 999999999999875589999999999888776655555 55999999976653
No 20
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1e-27 Score=266.30 Aligned_cols=181 Identities=15% Similarity=0.126 Sum_probs=140.3
Q ss_pred ccEEEEeeeEEe-ccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----------
Q 003528 8 CSTQLIDGDGTF-NVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ---------- 76 (813)
Q Consensus 8 ~~Iel~dls~~y-~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q---------- 76 (813)
.+|+++|++++| ++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.
T Consensus 2 ~~l~i~~l~~~~~~~---~~~l~~vsl~i--~~Ge~~~llG~sGsGKSTLLr~iaGl~~----p~~G~I~~~g~~i~~~~ 72 (356)
T PRK11650 2 AGLKLQAVRKSYDGK---TQVIKGIDLDV--ADGEFIVLVGPSGCGKSTLLRMVAGLER----ITSGEIWIGGRVVNELE 72 (356)
T ss_pred CEEEEEeEEEEeCCC---CEEEeeeeEEE--cCCCEEEEECCCCCcHHHHHHHHHCCCC----CCceEEEECCEECCCCC
Confidence 369999999999 54 67999999999 5899999999999999999999999998 8999831
Q ss_pred ---eccceecccccCCCchhHHHHhhCC-------Cccccccc--------------------hHHHHHHHHHHHHHHH-
Q 003528 77 ---TTKGIWMARCAGIEPCTLIMDLEGT-------DGRERGED--------------------DTAFEKQSALFALAVS- 125 (813)
Q Consensus 77 ---~~~g~~~~~~~~~e~~~~vld~~g~-------~~~e~~~~--------------------~~~~erQrv~iA~ALa- 125 (813)
...+++++.. ...+.+.+.+++.. ...+.... ...+|||||+||+||+
T Consensus 73 ~~~r~ig~v~Q~~-~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~ 151 (356)
T PRK11650 73 PADRDIAMVFQNY-ALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVR 151 (356)
T ss_pred HHHCCEEEEeCCc-cccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 1123334332 23333444444321 11111111 1113999999999999
Q ss_pred --hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccccC
Q 003528 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (813)
Q Consensus 126 --dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~~ 203 (813)
++|||||||++||+.. +..+.+.++++.++.|+|+|+||||.+++...+++++++.+ |+|+..|++.+++.
T Consensus 152 ~P~llLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~-G~i~~~g~~~~~~~ 224 (356)
T PRK11650 152 EPAVFLFDEPLSNLDAKL------RVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNG-GVAEQIGTPVEVYE 224 (356)
T ss_pred CCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC-CEEEEECCHHHHHh
Confidence 9999999999999999 99999999999876799999999999988776776666655 99999999888765
Q ss_pred Cc
Q 003528 204 ET 205 (813)
Q Consensus 204 ~~ 205 (813)
+.
T Consensus 225 ~p 226 (356)
T PRK11650 225 KP 226 (356)
T ss_pred CC
Confidence 43
No 21
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.95 E-value=1.2e-27 Score=260.86 Aligned_cols=179 Identities=11% Similarity=0.124 Sum_probs=136.8
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ---------- 76 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q---------- 76 (813)
.++|+++|++++|++ ..+|+++||++ .+|++++|+||||||||||+++|+|+.. |++|+..
T Consensus 5 ~~~i~i~~l~k~~~~---~~~l~~vsl~i--~~Gei~gllGpNGaGKSTLl~~l~Gl~~----p~~G~v~i~G~~~~~~~ 75 (306)
T PRK13537 5 VAPIDFRNVEKRYGD---KLVVDGLSFHV--QRGECFGLLGPNGAGKTTTLRMLLGLTH----PDAGSISLCGEPVPSRA 75 (306)
T ss_pred CceEEEEeEEEEECC---eEEEecceEEE--eCCcEEEEECCCCCCHHHHHHHHhcCCC----CCceEEEECCEecccch
Confidence 357999999999976 67999999999 5899999999999999999999999998 8999831
Q ss_pred ----eccceecccccCCCchhHHHHhh-------CCCcccccc--------------------chHHHHHHHHHHHHHHH
Q 003528 77 ----TTKGIWMARCAGIEPCTLIMDLE-------GTDGRERGE--------------------DDTAFEKQSALFALAVS 125 (813)
Q Consensus 77 ----~~~g~~~~~~~~~e~~~~vld~~-------g~~~~e~~~--------------------~~~~~erQrv~iA~ALa 125 (813)
...|++.+. ....+...+.++. |....+... ....+||||++||+||+
T Consensus 76 ~~~~~~ig~v~q~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~ 154 (306)
T PRK13537 76 RHARQRVGVVPQF-DNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALV 154 (306)
T ss_pred HHHHhcEEEEecc-CcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHh
Confidence 112333332 2222222333322 222111000 11123999999999999
Q ss_pred ---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccccc
Q 003528 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (813)
Q Consensus 126 ---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~ 202 (813)
++|||||||+|||+.+ +..+.++++++.++ |+|||++||+++++...|++++++.+ |+++..|++.++.
T Consensus 155 ~~P~lllLDEPt~gLD~~~------~~~l~~~l~~l~~~-g~till~sH~l~e~~~~~d~i~il~~-G~i~~~g~~~~l~ 226 (306)
T PRK13537 155 NDPDVLVLDEPTTGLDPQA------RHLMWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVIEE-GRKIAEGAPHALI 226 (306)
T ss_pred CCCCEEEEeCCCcCCCHHH------HHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEEC-CEEEEECCHHHHH
Confidence 9999999999999999 99999999999754 99999999999998876766666655 9999999987764
Q ss_pred C
Q 003528 203 M 203 (813)
Q Consensus 203 ~ 203 (813)
.
T Consensus 227 ~ 227 (306)
T PRK13537 227 E 227 (306)
T ss_pred h
Confidence 3
No 22
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=5.5e-28 Score=254.88 Aligned_cols=181 Identities=19% Similarity=0.193 Sum_probs=145.5
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee-----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----------- 76 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----------- 76 (813)
|+|.+.++++.|+. ..++++|++.| ..|++++++|||||||||||++|+|+.. |+.|++.
T Consensus 1 m~i~i~~~~~~~~~---~~a~~di~l~i--~~Ge~vaLlGpSGaGKsTlLRiIAGLe~----p~~G~I~~~~~~l~D~~~ 71 (345)
T COG1118 1 MSIRINNVKKRFGA---FGALDDISLDI--KSGELVALLGPSGAGKSTLLRIIAGLET----PDAGRIRLNGRVLFDVSN 71 (345)
T ss_pred Cceeehhhhhhccc---ccccccceeee--cCCcEEEEECCCCCcHHHHHHHHhCcCC----CCCceEEECCEeccchhc
Confidence 46999999999987 78999999999 5899999999999999999999999998 9999831
Q ss_pred -----eccceecccccCCCchhHHHHhhCCCc--c-------ccccchH--------------------HHHHHHHHHHH
Q 003528 77 -----TTKGIWMARCAGIEPCTLIMDLEGTDG--R-------ERGEDDT--------------------AFEKQSALFAL 122 (813)
Q Consensus 77 -----~~~g~~~~~~~~~e~~~~vld~~g~~~--~-------e~~~~~~--------------------~~erQrv~iA~ 122 (813)
...|.+||+.. ..+.++|.+++...- . ++..+.. .+|||||++||
T Consensus 72 ~~~~~R~VGfvFQ~YA-LF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALAR 150 (345)
T COG1118 72 LAVRDRKVGFVFQHYA-LFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALAR 150 (345)
T ss_pred cchhhcceeEEEechh-hcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHH
Confidence 22355555432 455566666653221 0 1111111 12999999999
Q ss_pred HHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcc
Q 003528 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (813)
Q Consensus 123 ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~ 199 (813)
||+ ++||||||+.+||..- ++.+...|+++..+.|.|.+|||||.+++...++++++|.+ |+|...|++.
T Consensus 151 ALA~eP~vLLLDEPf~ALDa~v------r~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~-G~Ieqvg~p~ 223 (345)
T COG1118 151 ALAVEPKVLLLDEPFGALDAKV------RKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQ-GRIEQVGPPD 223 (345)
T ss_pred HhhcCCCeEeecCCchhhhHHH------HHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecC-CeeeeeCCHH
Confidence 999 9999999999999998 99999999999988899999999999998877766666655 9999999999
Q ss_pred cccCCc
Q 003528 200 QAHMET 205 (813)
Q Consensus 200 e~~~~~ 205 (813)
+++..+
T Consensus 224 ev~~~P 229 (345)
T COG1118 224 EVYDHP 229 (345)
T ss_pred HHhcCC
Confidence 987654
No 23
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.3e-27 Score=240.56 Aligned_cols=192 Identities=16% Similarity=0.171 Sum_probs=156.1
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------ 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------ 76 (813)
||+..|++++..+ +.+|++++|++ .+|++++|+|||||||||||+.|+|-.. |++|+..
T Consensus 1 mi~a~nls~~~~G---r~ll~~vsl~~--~pGev~ailGPNGAGKSTlLk~LsGel~----p~~G~v~~~g~~l~~~~~~ 71 (259)
T COG4559 1 MIRAENLSYSLAG---RRLLDGVSLDL--RPGEVLAILGPNGAGKSTLLKALSGELS----PDSGEVTLNGVPLNSWPPE 71 (259)
T ss_pred CeeeeeeEEEeec---ceeccCcceec--cCCcEEEEECCCCccHHHHHHHhhCccC----CCCCeEeeCCcChhhCCHH
Confidence 5899999999977 89999999999 5899999999999999999999999987 8999821
Q ss_pred --eccceecccccCCCchhHHHHhhCCCc------cccccch--HH---------------------HHHHHHHHHHHHH
Q 003528 77 --TTKGIWMARCAGIEPCTLIMDLEGTDG------RERGEDD--TA---------------------FEKQSALFALAVS 125 (813)
Q Consensus 77 --~~~g~~~~~~~~~e~~~~vld~~g~~~------~e~~~~~--~~---------------------~erQrv~iA~ALa 125 (813)
.....++++.+.....+.+.++..+.. ++..++. .. +|+|||.|||.|+
T Consensus 72 ~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLa 151 (259)
T COG4559 72 ELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLA 151 (259)
T ss_pred HHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHH
Confidence 011233444455556666777764431 1111111 00 2999999999999
Q ss_pred ---------hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEec
Q 003528 126 ---------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (813)
Q Consensus 126 ---------dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g 196 (813)
++|+|||||+.||... +..++++.+++.++ |..|+.|-||++.+..+++++++|.+ ||++..|
T Consensus 152 Ql~~~v~~~r~L~LDEPtsaLDi~H------Q~~tl~laR~la~~-g~~V~~VLHDLNLAA~YaDrivll~~-Grv~a~g 223 (259)
T COG4559 152 QLWPPVPSGRWLFLDEPTSALDIAH------QHHTLRLARQLARE-GGAVLAVLHDLNLAAQYADRIVLLHQ-GRVIASG 223 (259)
T ss_pred HccCCCCCCceEEecCCccccchHH------HHHHHHHHHHHHhc-CCcEEEEEccchHHHHhhheeeeeeC-CeEeecC
Confidence 5899999999999999 99999999999986 89999999999999987777666666 9999999
Q ss_pred CcccccCCccchhhhcccccc
Q 003528 197 PKPQAHMETPLSEFFNVEVVA 217 (813)
Q Consensus 197 ~~~e~~~~~~l~d~f~~~~~~ 217 (813)
+|.+++....+...|+.++..
T Consensus 224 ~p~~vlt~Etl~~vyg~~~~V 244 (259)
T COG4559 224 SPQDVLTDETLERVYGADIRV 244 (259)
T ss_pred CHHHhcCHHHHHHHhCCceee
Confidence 999999999999999987643
No 24
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.2e-28 Score=243.39 Aligned_cols=191 Identities=19% Similarity=0.238 Sum_probs=155.0
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccce-------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI------- 81 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~------- 81 (813)
||++.|++|+|+. +.+++++|+.+ ++|.+++|+|||||||||||.+++.+.+ .++|... ..|.
T Consensus 1 MI~i~nv~K~y~~---~~vl~~isl~i--~~g~iTs~IGPNGAGKSTLLS~~sRL~~----~d~G~i~-i~g~~~~~~~s 70 (252)
T COG4604 1 MITIENVSKSYGT---KVVLDDVSLDI--PKGGITSIIGPNGAGKSTLLSMMSRLLK----KDSGEIT-IDGLELTSTPS 70 (252)
T ss_pred CeeehhhhHhhCC---EEeeccceeee--cCCceeEEECCCCccHHHHHHHHHHhcc----ccCceEE-EeeeecccCCh
Confidence 5899999999987 78999999999 5899999999999999999999999998 8889831 1111
Q ss_pred --------ecccccCCCchhHHHHhhCCCcc------ccccchH-----------------------HHHHHHHHHHHHH
Q 003528 82 --------WMARCAGIEPCTLIMDLEGTDGR------ERGEDDT-----------------------AFEKQSALFALAV 124 (813)
Q Consensus 82 --------~~~~~~~~e~~~~vld~~g~~~~------e~~~~~~-----------------------~~erQrv~iA~AL 124 (813)
.+.+.......++|.|+.+.++. -..++.. .+||||+.+|+.+
T Consensus 71 ~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVl 150 (252)
T COG4604 71 KELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVL 150 (252)
T ss_pred HHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheee
Confidence 11112223334556666544321 1111110 1299999999999
Q ss_pred H---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccc
Q 003528 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (813)
Q Consensus 125 a---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~ 201 (813)
+ |.++||||.++||..+ ...+++.++++..+.|+||++|.||++++..+.+.++.+.+ |+++..|+|+++
T Consensus 151 aQdTdyvlLDEPLNNLDmkH------sv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~-G~vv~~G~~~ei 223 (252)
T COG4604 151 AQDTDYVLLDEPLNNLDMKH------SVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKN-GKVVKQGSPDEI 223 (252)
T ss_pred eccCcEEEecCcccccchHH------HHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecC-CEEEecCCHHHh
Confidence 9 9999999999999999 99999999999999999999999999999977777776666 999999999999
Q ss_pred cCCccchhhhccccc
Q 003528 202 HMETPLSEFFNVEVV 216 (813)
Q Consensus 202 ~~~~~l~d~f~~~~~ 216 (813)
+....+.+.|+.++.
T Consensus 224 i~~~~L~eiydm~i~ 238 (252)
T COG4604 224 IQPEILSEIYDMDIP 238 (252)
T ss_pred cCHHHHHHHhcCCce
Confidence 999999999998765
No 25
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2e-27 Score=263.35 Aligned_cols=181 Identities=15% Similarity=0.156 Sum_probs=140.9
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ---------- 76 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q---------- 76 (813)
+++|+++|+++.|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.. |++|++.
T Consensus 4 ~~~l~~~~l~~~~~~---~~~l~~isl~i--~~Ge~~~llGpsGsGKSTLLr~IaGl~~----p~~G~I~~~g~~i~~~~ 74 (351)
T PRK11432 4 KNFVVLKNITKRFGS---NTVIDNLNLTI--KQGTMVTLLGPSGCGKTTVLRLVAGLEK----PTEGQIFIDGEDVTHRS 74 (351)
T ss_pred CcEEEEEeEEEEECC---eEEEeeeEEEE--cCCCEEEEECCCCCcHHHHHHHHHCCCC----CCceEEEECCEECCCCC
Confidence 457999999999975 67999999999 5899999999999999999999999998 8999831
Q ss_pred ---eccceecccccCCCchhHHHHhhC-------CCccccccc--------------------hHHHHHHHHHHHHHHH-
Q 003528 77 ---TTKGIWMARCAGIEPCTLIMDLEG-------TDGRERGED--------------------DTAFEKQSALFALAVS- 125 (813)
Q Consensus 77 ---~~~g~~~~~~~~~e~~~~vld~~g-------~~~~e~~~~--------------------~~~~erQrv~iA~ALa- 125 (813)
...+++++.. ...+.+.+.++.. .+..+..+. ...+|+|||+||+||+
T Consensus 75 ~~~r~ig~vfQ~~-~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~ 153 (351)
T PRK11432 75 IQQRDICMVFQSY-ALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALIL 153 (351)
T ss_pred HHHCCEEEEeCCc-ccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 1123444432 2233333344332 111111111 1123999999999999
Q ss_pred --hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccccC
Q 003528 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (813)
Q Consensus 126 --dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~~ 203 (813)
++||||||+++||+.. +..+.+.++++.++.|+|+|+||||.+++...+++++++.+ |+|+..|++.+++.
T Consensus 154 ~P~lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~-G~i~~~g~~~~~~~ 226 (351)
T PRK11432 154 KPKVLLFDEPLSNLDANL------RRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNK-GKIMQIGSPQELYR 226 (351)
T ss_pred CCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence 9999999999999999 99999999999876799999999999988766777666665 99999999888765
Q ss_pred C
Q 003528 204 E 204 (813)
Q Consensus 204 ~ 204 (813)
.
T Consensus 227 ~ 227 (351)
T PRK11432 227 Q 227 (351)
T ss_pred C
Confidence 4
No 26
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.95 E-value=1.9e-27 Score=262.50 Aligned_cols=183 Identities=12% Similarity=0.123 Sum_probs=138.5
Q ss_pred cEEEEeeeEEecccc-ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee-----------
Q 003528 9 STQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----------- 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~-~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----------- 76 (813)
||+++|++++|+..+ ...+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i--~~Gei~gIiG~sGaGKSTLlr~I~gl~~----p~~G~I~i~G~~i~~~~~ 74 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHV--PAGQIYGVIGASGAGKSTLIRCVNLLER----PTSGSVIVDGQDLTTLSN 74 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCCC----CCceEEEECCEECCcCCH
Confidence 589999999996311 247999999999 5899999999999999999999999998 8999821
Q ss_pred -------eccceecccccC------CCchhHHHHhhCCCcccccc--------------------chHHHHHHHHHHHHH
Q 003528 77 -------TTKGIWMARCAG------IEPCTLIMDLEGTDGRERGE--------------------DDTAFEKQSALFALA 123 (813)
Q Consensus 77 -------~~~g~~~~~~~~------~e~~~~vld~~g~~~~e~~~--------------------~~~~~erQrv~iA~A 123 (813)
...++.++.... .+++.+.+...+.+..+..+ ....+|||||+||+|
T Consensus 75 ~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARA 154 (343)
T TIGR02314 75 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARA 154 (343)
T ss_pred HHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 112344443221 22333332222222111111 111239999999999
Q ss_pred HH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccc
Q 003528 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (813)
Q Consensus 124 La---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e 200 (813)
|+ ++||+||||++||+.+ ...++++++++.++.|.|||+||||++.+...|++++++.+ |+|+..|++.+
T Consensus 155 L~~~P~iLLlDEPts~LD~~t------~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~-G~iv~~g~~~~ 227 (343)
T TIGR02314 155 LASNPKVLLCDEATSALDPAT------TQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISN-GELIEQGTVSE 227 (343)
T ss_pred HHhCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEEcCHHH
Confidence 99 9999999999999999 99999999999876689999999999998876766666655 99999999887
Q ss_pred ccCC
Q 003528 201 AHME 204 (813)
Q Consensus 201 ~~~~ 204 (813)
++.+
T Consensus 228 v~~~ 231 (343)
T TIGR02314 228 IFSH 231 (343)
T ss_pred HHcC
Confidence 7643
No 27
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.94 E-value=2.2e-27 Score=262.07 Aligned_cols=179 Identities=12% Similarity=0.120 Sum_probs=136.6
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ---------- 76 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q---------- 76 (813)
+++|+++|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.. |++|+..
T Consensus 39 ~~~i~i~nl~k~y~~---~~~l~~is~~i--~~Gei~gLlGpNGaGKSTLl~~L~Gl~~----p~~G~i~i~G~~~~~~~ 109 (340)
T PRK13536 39 TVAIDLAGVSKSYGD---KAVVNGLSFTV--ASGECFGLLGPNGAGKSTIARMILGMTS----PDAGKITVLGVPVPARA 109 (340)
T ss_pred ceeEEEEEEEEEECC---EEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHHcCCC----CCceEEEECCEECCcch
Confidence 457999999999976 67999999999 5899999999999999999999999998 8999831
Q ss_pred ----eccceecccccCCCchhHHHHhh-------CCCccc--------------------cccchHHHHHHHHHHHHHHH
Q 003528 77 ----TTKGIWMARCAGIEPCTLIMDLE-------GTDGRE--------------------RGEDDTAFEKQSALFALAVS 125 (813)
Q Consensus 77 ----~~~g~~~~~~~~~e~~~~vld~~-------g~~~~e--------------------~~~~~~~~erQrv~iA~ALa 125 (813)
...|+.++.. ...+...+.++. +....+ .......+||||++||+||+
T Consensus 110 ~~~~~~ig~v~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~ 188 (340)
T PRK13536 110 RLARARIGVVPQFD-NLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALI 188 (340)
T ss_pred HHHhccEEEEeCCc-cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHh
Confidence 1122333221 221222222221 211110 00111223999999999999
Q ss_pred ---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccccc
Q 003528 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (813)
Q Consensus 126 ---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~ 202 (813)
++|||||||+|||+.. +..+.+++.++.++ |.|||++||+++++...|++++++.+ |+|+..|++.++.
T Consensus 189 ~~P~lLiLDEPt~gLD~~~------r~~l~~~l~~l~~~-g~tilisSH~l~e~~~~~d~i~il~~-G~i~~~g~~~~l~ 260 (340)
T PRK13536 189 NDPQLLILDEPTTGLDPHA------RHLIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVLEA-GRKIAEGRPHALI 260 (340)
T ss_pred cCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEEC-CEEEEEcCHHHHH
Confidence 9999999999999999 99999999999764 99999999999998876766666655 9999999887764
Q ss_pred C
Q 003528 203 M 203 (813)
Q Consensus 203 ~ 203 (813)
.
T Consensus 261 ~ 261 (340)
T PRK13536 261 D 261 (340)
T ss_pred h
Confidence 3
No 28
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.94 E-value=2.1e-27 Score=263.37 Aligned_cols=181 Identities=17% Similarity=0.121 Sum_probs=140.7
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ---------- 76 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q---------- 76 (813)
|++|+++|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.. |++|++.
T Consensus 2 ~~~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~l~GpsGsGKSTLLr~iaGl~~----p~~G~I~i~g~~~~~~~ 72 (353)
T TIGR03265 2 SPYLSIDNIRKRFGA---FTALKDISLSV--KKGEFVCLLGPSGCGKTTLLRIIAGLER----QTAGTIYQGGRDITRLP 72 (353)
T ss_pred CcEEEEEEEEEEeCC---eEEEEeeEEEE--cCCCEEEEECCCCCCHHHHHHHHHCCCC----CCceEEEECCEECCCCC
Confidence 457999999999976 67999999999 5899999999999999999999999997 8999832
Q ss_pred ---eccceecccccCCCchhHHHHhhC-------CCccccccc--------------------hHHHHHHHHHHHHHHH-
Q 003528 77 ---TTKGIWMARCAGIEPCTLIMDLEG-------TDGRERGED--------------------DTAFEKQSALFALAVS- 125 (813)
Q Consensus 77 ---~~~g~~~~~~~~~e~~~~vld~~g-------~~~~e~~~~--------------------~~~~erQrv~iA~ALa- 125 (813)
...+++++.. ...+.+.+.+++. .+..+.... ...+|+|||+||+||+
T Consensus 73 ~~~r~ig~v~Q~~-~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~ 151 (353)
T TIGR03265 73 PQKRDYGIVFQSY-ALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALAT 151 (353)
T ss_pred HHHCCEEEEeCCc-ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 1123444332 2233334444332 111111111 1123999999999999
Q ss_pred --hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccccC
Q 003528 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (813)
Q Consensus 126 --dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~~ 203 (813)
++||||||+++||+.. +..+.+.++++.++.|+|+|+||||.+++...+++++++.+ |+|+..|++.+++.
T Consensus 152 ~P~llLLDEP~s~LD~~~------r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~-G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 152 SPGLLLLDEPLSALDARV------REHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNH-GVIEQVGTPQEIYR 224 (353)
T ss_pred CCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence 9999999999999999 99999999999876799999999999988766766666655 99999999988876
Q ss_pred C
Q 003528 204 E 204 (813)
Q Consensus 204 ~ 204 (813)
.
T Consensus 225 ~ 225 (353)
T TIGR03265 225 H 225 (353)
T ss_pred C
Confidence 4
No 29
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=8.5e-28 Score=247.47 Aligned_cols=188 Identities=14% Similarity=0.138 Sum_probs=145.3
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee-----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----------- 76 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----------- 76 (813)
+++++++++++|++ ..++++|||++ .+|++++||||||||||||+|+|.|..+ |++|++.
T Consensus 3 ~lL~v~~l~k~FGG---l~Al~~Vsl~v--~~Gei~~LIGPNGAGKTTlfNlitG~~~----P~~G~v~~~G~~it~l~p 73 (250)
T COG0411 3 PLLEVRGLSKRFGG---LTAVNDVSLEV--RPGEIVGLIGPNGAGKTTLFNLITGFYK----PSSGTVIFRGRDITGLPP 73 (250)
T ss_pred ceeeeccceeecCC---EEEEeceeEEE--cCCeEEEEECCCCCCceeeeeeeccccc----CCCceEEECCcccCCCCH
Confidence 46899999999988 78999999999 5899999999999999999999999998 9999831
Q ss_pred ---eccce--------ecccccCCCchhHHHHh-------hCCCcccccc-------------------------chHHH
Q 003528 77 ---TTKGI--------WMARCAGIEPCTLIMDL-------EGTDGRERGE-------------------------DDTAF 113 (813)
Q Consensus 77 ---~~~g~--------~~~~~~~~e~~~~vld~-------~g~~~~e~~~-------------------------~~~~~ 113 (813)
...|+ .|+..+..+|++..... .+.+...+.+ .....
T Consensus 74 ~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG 153 (250)
T COG0411 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYG 153 (250)
T ss_pred HHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChh
Confidence 01121 12222223333332110 0111100000 01112
Q ss_pred HHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCC
Q 003528 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (813)
Q Consensus 114 erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~G 190 (813)
+++|+.||+||+ ++||||||.+|+.+.. ...+.+.++++.+..|.||++|.||++.+...|++++++.. |
T Consensus 154 ~qR~LEIArALa~~P~lLLLDEPaAGln~~e------~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~-G 226 (250)
T COG0411 154 QQRRLEIARALATQPKLLLLDEPAAGLNPEE------TEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNY-G 226 (250)
T ss_pred HhHHHHHHHHHhcCCCEEEecCccCCCCHHH------HHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccC-C
Confidence 999999999999 9999999999999999 99999999999987789999999999999888888877777 9
Q ss_pred eEEEecCcccccCCccchhhh
Q 003528 191 KIWDSVPKPQAHMETPLSEFF 211 (813)
Q Consensus 191 kI~~~g~~~e~~~~~~l~d~f 211 (813)
+++++|+|.++.+++...+.|
T Consensus 227 ~~IAeG~P~eV~~dp~VieAY 247 (250)
T COG0411 227 EVIAEGTPEEVRNNPRVIEAY 247 (250)
T ss_pred cCcccCCHHHHhcCHHhHHHh
Confidence 999999999998887655544
No 30
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.94 E-value=3.5e-27 Score=263.37 Aligned_cols=183 Identities=16% Similarity=0.145 Sum_probs=141.9
Q ss_pred CCCccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee--------
Q 003528 5 EECCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ-------- 76 (813)
Q Consensus 5 ~~~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q-------- 76 (813)
.++++|+++|+++.|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.
T Consensus 10 ~~~~~L~l~~l~~~~~~---~~~l~~vsl~i--~~Ge~~~LlGpsGsGKSTLLr~IaGl~~----p~~G~I~~~g~~i~~ 80 (375)
T PRK09452 10 SLSPLVELRGISKSFDG---KEVISNLDLTI--NNGEFLTLLGPSGCGKTTVLRLIAGFET----PDSGRIMLDGQDITH 80 (375)
T ss_pred cCCceEEEEEEEEEECC---eEEEeeeEEEE--eCCCEEEEECCCCCcHHHHHHHHhCCCC----CCceEEEECCEECCC
Confidence 34567999999999976 67999999999 5899999999999999999999999998 8889831
Q ss_pred -----eccceecccccCCCchhHHHHhhCC-------Cccccccc--------------------hHHHHHHHHHHHHHH
Q 003528 77 -----TTKGIWMARCAGIEPCTLIMDLEGT-------DGRERGED--------------------DTAFEKQSALFALAV 124 (813)
Q Consensus 77 -----~~~g~~~~~~~~~e~~~~vld~~g~-------~~~e~~~~--------------------~~~~erQrv~iA~AL 124 (813)
...+++++.. ...+.+.+.+++.. +..+..+. ...+|+|||+||+||
T Consensus 81 ~~~~~r~ig~vfQ~~-~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL 159 (375)
T PRK09452 81 VPAENRHVNTVFQSY-ALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAV 159 (375)
T ss_pred CCHHHCCEEEEecCc-ccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 1123444432 23333344444321 11111011 111399999999999
Q ss_pred H---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccc
Q 003528 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (813)
Q Consensus 125 a---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~ 201 (813)
+ ++||||||+++||+.. +..+.+.|+++.++.|+|+|+||||.+++...+++++++.+ |+|...|++.++
T Consensus 160 ~~~P~llLLDEP~s~LD~~~------r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~-G~i~~~g~~~~i 232 (375)
T PRK09452 160 VNKPKVLLLDESLSALDYKL------RKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRD-GRIEQDGTPREI 232 (375)
T ss_pred hcCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEEcCHHHH
Confidence 9 9999999999999999 99999999999876799999999999988766766666665 999999998887
Q ss_pred cCC
Q 003528 202 HME 204 (813)
Q Consensus 202 ~~~ 204 (813)
+..
T Consensus 233 ~~~ 235 (375)
T PRK09452 233 YEE 235 (375)
T ss_pred HhC
Confidence 654
No 31
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.94 E-value=4.2e-27 Score=264.49 Aligned_cols=189 Identities=19% Similarity=0.167 Sum_probs=146.0
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee-----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----------- 76 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----------- 76 (813)
++|+++|++++|++ +.+|+++||++ .+|++++|+||||||||||||+|+|+.+ |++|+..
T Consensus 2 ~~L~~~nls~~y~~---~~vL~~vs~~i--~~Geiv~liGpNGaGKSTLLk~LaGll~----p~sG~I~l~G~~i~~~~~ 72 (402)
T PRK09536 2 PMIDVSDLSVEFGD---TTVLDGVDLSV--REGSLVGLVGPNGAGKTTLLRAINGTLT----PTAGTVLVAGDDVEALSA 72 (402)
T ss_pred ceEEEeeEEEEECC---EEEEEeeEEEE--CCCCEEEEECCCCchHHHHHHHHhcCCC----CCCcEEEECCEEcCcCCH
Confidence 47999999999976 78999999999 5899999999999999999999999998 8999731
Q ss_pred ----eccceecccccCCCchhHHHHhhCCCc-----------cc---ccc-----------------chHHHHHHHHHHH
Q 003528 77 ----TTKGIWMARCAGIEPCTLIMDLEGTDG-----------RE---RGE-----------------DDTAFEKQSALFA 121 (813)
Q Consensus 77 ----~~~g~~~~~~~~~e~~~~vld~~g~~~-----------~e---~~~-----------------~~~~~erQrv~iA 121 (813)
...++..+. ......+.+.++..+.. .. +.. ....+||||++||
T Consensus 73 ~~~~~~ig~v~q~-~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IA 151 (402)
T PRK09536 73 RAASRRVASVPQD-TSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLA 151 (402)
T ss_pred HHHhcceEEEccC-CCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 112233222 22222233334331110 00 000 0111399999999
Q ss_pred HHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCc
Q 003528 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (813)
Q Consensus 122 ~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~ 198 (813)
+||+ ++|||||||++||+.. +..++++++++.+ .|+|||++|||++.+...+++.+++.+ |+++..|++
T Consensus 152 rAL~~~P~iLLLDEPtsgLD~~~------~~~l~~lL~~l~~-~g~TIIivsHdl~~~~~~adrii~l~~-G~iv~~G~~ 223 (402)
T PRK09536 152 RALAQATPVLLLDEPTASLDINH------QVRTLELVRRLVD-DGKTAVAAIHDLDLAARYCDELVLLAD-GRVRAAGPP 223 (402)
T ss_pred HHHHcCCCEEEEECCcccCCHHH------HHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEEC-CEEEEecCH
Confidence 9999 9999999999999999 9999999999986 489999999999998876666666655 999999999
Q ss_pred ccccCCccchhhhccc
Q 003528 199 PQAHMETPLSEFFNVE 214 (813)
Q Consensus 199 ~e~~~~~~l~d~f~~~ 214 (813)
.+++....+.+.|+..
T Consensus 224 ~ev~~~~~l~~~~~~~ 239 (402)
T PRK09536 224 ADVLTADTLRAAFDAR 239 (402)
T ss_pred HHHhCcHHHHHHhCCc
Confidence 9988887888888754
No 32
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=6.6e-27 Score=245.58 Aligned_cols=178 Identities=18% Similarity=0.154 Sum_probs=132.5
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-----------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----------- 77 (813)
+|+++|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~ 72 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDI--PSGELVALLGPSGSGKTTLLRLIAGLER----PDSGTILFGGEDATDVPVQ 72 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCEECCcCCcc
Confidence 5999999999976 67999999999 5899999999999999999999999997 88897310
Q ss_pred --ccceecccccCCCchhHHHHhhCCC-----------ccc---cc-----------------cchHHHHHHHHHHHHHH
Q 003528 78 --TKGIWMARCAGIEPCTLIMDLEGTD-----------GRE---RG-----------------EDDTAFEKQSALFALAV 124 (813)
Q Consensus 78 --~~g~~~~~~~~~e~~~~vld~~g~~-----------~~e---~~-----------------~~~~~~erQrv~iA~AL 124 (813)
..+++.+.. ...+...+.++.... ..+ +. .....+|+||++||+|+
T Consensus 73 ~~~i~~v~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 151 (239)
T cd03296 73 ERNVGFVFQHY-ALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARAL 151 (239)
T ss_pred ccceEEEecCC-cccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 112222221 111222333332110 000 00 00111399999999999
Q ss_pred H---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccc
Q 003528 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (813)
Q Consensus 125 a---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~ 201 (813)
+ ++|||||||++||+.. .+.+.+++.++.++.|+|||++|||++.+...+++++++. +|+++..|++.++
T Consensus 152 ~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~-~G~i~~~~~~~~~ 224 (239)
T cd03296 152 AVEPKVLLLDEPFGALDAKV------RKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMN-KGRIEQVGTPDEV 224 (239)
T ss_pred hcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE-CCeEEEecCHHHH
Confidence 9 9999999999999999 9999999999976558999999999988776566665554 5999999887665
Q ss_pred cC
Q 003528 202 HM 203 (813)
Q Consensus 202 ~~ 203 (813)
+.
T Consensus 225 ~~ 226 (239)
T cd03296 225 YD 226 (239)
T ss_pred hc
Confidence 43
No 33
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.8e-27 Score=260.93 Aligned_cols=179 Identities=15% Similarity=0.136 Sum_probs=136.7
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-----------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----------- 77 (813)
+|+++|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.. |++|++.-
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i--~~Ge~~~l~G~nGsGKSTLL~~iaGl~~----p~~G~I~~~g~~i~~~~~~ 73 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDI--HEGEFVVFVGPSGCGKSTLLRMIAGLED----ITSGDLFIGEKRMNDVPPA 73 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEE--cCCCEEEEECCCCCcHHHHHHHHhCCCC----CCceEEEECCEECCCCCHh
Confidence 6999999999976 67999999999 5899999999999999999999999997 88998310
Q ss_pred --ccceecccccCCCchhHHHHhh-------CCCccccc--------------------cchHHHHHHHHHHHHHHH---
Q 003528 78 --TKGIWMARCAGIEPCTLIMDLE-------GTDGRERG--------------------EDDTAFEKQSALFALAVS--- 125 (813)
Q Consensus 78 --~~g~~~~~~~~~e~~~~vld~~-------g~~~~e~~--------------------~~~~~~erQrv~iA~ALa--- 125 (813)
..+++++.. ...+...+.++. +....+.. .....+||||++||+||+
T Consensus 74 ~~~i~~v~Q~~-~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P 152 (369)
T PRK11000 74 ERGVGMVFQSY-ALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP 152 (369)
T ss_pred HCCEEEEeCCc-ccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 123333332 122222333332 11111100 011123999999999999
Q ss_pred hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccccCC
Q 003528 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHME 204 (813)
Q Consensus 126 dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~~~ 204 (813)
++|||||||++||+.. +..+.+.++++.++.|.|+|+||||++++...+++++++.+ |+|+..|++.+++..
T Consensus 153 ~lLLLDEPts~LD~~~------~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~-G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 153 SVFLLDEPLSNLDAAL------RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDA-GRVAQVGKPLELYHY 224 (369)
T ss_pred CEEEEeCCcccCCHHH------HHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEEcCHHHHHhC
Confidence 9999999999999999 99999999998766689999999999988766666666655 999999998877643
No 34
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.94 E-value=8.2e-27 Score=259.37 Aligned_cols=181 Identities=14% Similarity=0.138 Sum_probs=140.0
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCC--Ceee--------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFK--GRSQ-------- 76 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~s--G~~q-------- 76 (813)
|..|+++|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++ |++.
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~vsl~i--~~Ge~~~llGpsGsGKSTLLr~iaGl~~----p~~~~G~i~~~g~~~~~ 73 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA---NTVLDDLSLEI--EAGELLALIGKSGCGKTTLLRAIAGFVK----AAGLTGRIAIADRDLTH 73 (362)
T ss_pred ceEEEEEEEEEEECC---eEEEeeeEEEE--CCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCCCEEEEECCEECCC
Confidence 557999999999976 67999999999 5899999999999999999999999998 888 8731
Q ss_pred -----eccceecccccCCCchhHHHHhh-------CCCccccccc--------------------hHHHHHHHHHHHHHH
Q 003528 77 -----TTKGIWMARCAGIEPCTLIMDLE-------GTDGRERGED--------------------DTAFEKQSALFALAV 124 (813)
Q Consensus 77 -----~~~g~~~~~~~~~e~~~~vld~~-------g~~~~e~~~~--------------------~~~~erQrv~iA~AL 124 (813)
...++.++... ..+.+.+.+++ +....+.... ...+|||||+||+||
T Consensus 74 ~~~~~r~ig~vfQ~~~-l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL 152 (362)
T TIGR03258 74 APPHKRGLALLFQNYA-LFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAI 152 (362)
T ss_pred CCHHHCCEEEEECCcc-cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHH
Confidence 11234444322 22233333333 2221111111 112399999999999
Q ss_pred H---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCC-CceEEEEeecCCCcccccCcceeeecCCeEEEecCccc
Q 003528 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPR-KTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (813)
Q Consensus 125 a---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~-g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e 200 (813)
+ ++||||||+++||+.. +..+.+.++++.++. |+|+|+||||++++...+++++++.+ |+++..|++.+
T Consensus 153 ~~~P~llLLDEP~s~LD~~~------r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~-G~i~~~g~~~~ 225 (362)
T TIGR03258 153 AIEPDVLLLDEPLSALDANI------RANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKD-GRLAAHGEPQA 225 (362)
T ss_pred hcCCCEEEEcCccccCCHHH------HHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEEcCHHH
Confidence 9 9999999999999999 999999999998765 89999999999988776777666655 99999999888
Q ss_pred ccCC
Q 003528 201 AHME 204 (813)
Q Consensus 201 ~~~~ 204 (813)
++..
T Consensus 226 ~~~~ 229 (362)
T TIGR03258 226 LYDA 229 (362)
T ss_pred HHhC
Confidence 8754
No 35
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=8.5e-27 Score=260.51 Aligned_cols=182 Identities=13% Similarity=0.115 Sum_probs=140.9
Q ss_pred CCccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee---------
Q 003528 6 ECCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ--------- 76 (813)
Q Consensus 6 ~~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q--------- 76 (813)
++++|+++|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.. |++|++.
T Consensus 16 ~~~~l~l~~v~~~~~~---~~~l~~vsl~i--~~Ge~~~llGpsGsGKSTLLr~IaGl~~----p~~G~I~i~g~~i~~~ 86 (377)
T PRK11607 16 LTPLLEIRNLTKSFDG---QHAVDDVSLTI--YKGEIFALLGASGCGKSTLLRMLAGFEQ----PTAGQIMLDGVDLSHV 86 (377)
T ss_pred CCceEEEEeEEEEECC---EEEEeeeEEEE--cCCCEEEEECCCCCcHHHHHHHHhCCCC----CCceEEEECCEECCCC
Confidence 4567999999999975 57999999999 5899999999999999999999999998 8889731
Q ss_pred ----eccceecccccCCCchhHHHHhhCC-------Cccccccc--------------------hHHHHHHHHHHHHHHH
Q 003528 77 ----TTKGIWMARCAGIEPCTLIMDLEGT-------DGRERGED--------------------DTAFEKQSALFALAVS 125 (813)
Q Consensus 77 ----~~~g~~~~~~~~~e~~~~vld~~g~-------~~~e~~~~--------------------~~~~erQrv~iA~ALa 125 (813)
...|+.++.. ...+.+.+.+++.. ...+..+. ...+|+|||+||+||+
T Consensus 87 ~~~~r~ig~vfQ~~-~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~ 165 (377)
T PRK11607 87 PPYQRPINMMFQSY-ALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLA 165 (377)
T ss_pred CHHHCCEEEEeCCC-ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 1123444433 23333344444321 11111111 1113999999999999
Q ss_pred ---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccccc
Q 003528 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (813)
Q Consensus 126 ---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~ 202 (813)
++||||||+++||+.. +..+.+.++++.++.|.|+|+||||.+++...+++++++.+ |+|...|++.+++
T Consensus 166 ~~P~lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~-G~i~~~g~~~~~~ 238 (377)
T PRK11607 166 KRPKLLLLDEPMGALDKKL------RDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNR-GKFVQIGEPEEIY 238 (377)
T ss_pred cCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeC-CEEEEEcCHHHHH
Confidence 9999999999999999 99999999998776689999999999988766776666655 9999999988876
Q ss_pred CC
Q 003528 203 ME 204 (813)
Q Consensus 203 ~~ 204 (813)
..
T Consensus 239 ~~ 240 (377)
T PRK11607 239 EH 240 (377)
T ss_pred hC
Confidence 54
No 36
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.94 E-value=8.5e-27 Score=258.59 Aligned_cols=179 Identities=19% Similarity=0.190 Sum_probs=139.1
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------ 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------ 76 (813)
+|+++|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i--~~Ge~~~llGpsGsGKSTLLr~IaGl~~----p~~G~I~i~g~~i~~~~~~ 72 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDI--PSGQMVALLGPSGSGKTTLLRIIAGLEH----QTSGHIRFHGTDVSRLHAR 72 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEECCEECCCCCHH
Confidence 5999999999976 67999999999 5899999999999999999999999997 8999831
Q ss_pred -eccceecccccCCCchhHHHHhhCCCc-----------cccccc--------------------hHHHHHHHHHHHHHH
Q 003528 77 -TTKGIWMARCAGIEPCTLIMDLEGTDG-----------RERGED--------------------DTAFEKQSALFALAV 124 (813)
Q Consensus 77 -~~~g~~~~~~~~~e~~~~vld~~g~~~-----------~e~~~~--------------------~~~~erQrv~iA~AL 124 (813)
...+++++.. ...+.+.+.++..... .+..+. ...+|+|||+||+||
T Consensus 73 ~r~i~~v~Q~~-~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL 151 (353)
T PRK10851 73 DRKVGFVFQHY-ALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARAL 151 (353)
T ss_pred HCCEEEEecCc-ccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 1123333332 2333334444432210 000001 011399999999999
Q ss_pred H---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccc
Q 003528 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (813)
Q Consensus 125 a---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~ 201 (813)
+ ++|||||||++||+.. +..+.+.+.++.++.|+|+|+||||++++...+++++++.+ |+|+..|++.++
T Consensus 152 ~~~P~llLLDEP~s~LD~~~------r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~-G~i~~~g~~~~i 224 (353)
T PRK10851 152 AVEPQILLLDEPFGALDAQV------RKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQ-GNIEQAGTPDQV 224 (353)
T ss_pred hcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEEcCHHHH
Confidence 9 9999999999999999 99999999999876789999999999988877776666655 999999998887
Q ss_pred cCC
Q 003528 202 HME 204 (813)
Q Consensus 202 ~~~ 204 (813)
+.+
T Consensus 225 ~~~ 227 (353)
T PRK10851 225 WRE 227 (353)
T ss_pred HhC
Confidence 654
No 37
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=2.4e-27 Score=232.74 Aligned_cols=182 Identities=19% Similarity=0.169 Sum_probs=143.9
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ---------- 76 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q---------- 76 (813)
++.|++.|+.|+|+. ..+|++|||+- ..|++++|||.+||||||+|+||+-+.. |+.|++.
T Consensus 4 ~~~l~v~dlHK~~G~---~eVLKGvSL~A--~~GdVisIIGsSGSGKSTfLRCiN~LE~----P~~G~I~v~geei~~k~ 74 (256)
T COG4598 4 ENALEVEDLHKRYGE---HEVLKGVSLQA--NAGDVISIIGSSGSGKSTFLRCINFLEK----PSAGSIRVNGEEIRLKR 74 (256)
T ss_pred ccceehhHHHhhccc---chhhcceeeec--CCCCEEEEecCCCCchhHHHHHHHhhcC----CCCceEEECCeEEEeee
Confidence 357999999999987 78999999998 5899999999999999999999999987 8999821
Q ss_pred ------------------eccceecccccCCCchhHHHHh--------hCCCccccccchHH------------------
Q 003528 77 ------------------TTKGIWMARCAGIEPCTLIMDL--------EGTDGRERGEDDTA------------------ 112 (813)
Q Consensus 77 ------------------~~~g~~~~~~~~~e~~~~vld~--------~g~~~~e~~~~~~~------------------ 112 (813)
+.-|++|+..+. -..++++++ +|....+..+....
T Consensus 75 ~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNL-WsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~L 153 (256)
T COG4598 75 DKDGQLKPADKRQLQRLRTRLGMVFQHFNL-WSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHL 153 (256)
T ss_pred CCCCCeeeCCHHHHHHHHHHhhHhhhhcch-hHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCcccc
Confidence 122334443322 223344443 24443332222111
Q ss_pred --HHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeee
Q 003528 113 --FEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE 187 (813)
Q Consensus 113 --~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~ 187 (813)
.|+||++|||||+ +++|+||||++|||+- ..+++.++.+|.++ |.|+++|||.+.++.....+++++.
T Consensus 154 SGGQQQR~aIARaLameP~vmLFDEPTSALDPEl------VgEVLkv~~~LAeE-grTMv~VTHEM~FAR~Vss~v~fLh 226 (256)
T COG4598 154 SGGQQQRVAIARALAMEPEVMLFDEPTSALDPEL------VGEVLKVMQDLAEE-GRTMVVVTHEMGFARDVSSHVIFLH 226 (256)
T ss_pred CchHHHHHHHHHHHhcCCceEeecCCcccCCHHH------HHHHHHHHHHHHHh-CCeEEEEeeehhHHHhhhhheEEee
Confidence 2999999999999 9999999999999998 99999999999986 9999999999999987666666665
Q ss_pred cCCeEEEecCcccccCCcc
Q 003528 188 DIQKIWDSVPKPQAHMETP 206 (813)
Q Consensus 188 ~~GkI~~~g~~~e~~~~~~ 206 (813)
+ |.|-+.|+|.++|.++.
T Consensus 227 ~-G~iEE~G~P~qvf~nP~ 244 (256)
T COG4598 227 Q-GKIEEEGPPEQVFGNPQ 244 (256)
T ss_pred c-ceecccCChHHHhcCCC
Confidence 5 99999999999886643
No 38
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.94 E-value=1.1e-26 Score=242.39 Aligned_cols=177 Identities=13% Similarity=0.119 Sum_probs=130.6
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee------------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------------ 77 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~------------ 77 (813)
|+++|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~ 71 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSV--KQGEIVGLLGPNGAGKTTTFYMIVGLVK----PDSGKILLDGQDITKLPMHK 71 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEe--cCCcEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEECCEecccCCHhH
Confidence 578999999975 67999999999 5899999999999999999999999997 88897210
Q ss_pred ----ccceecccccCCCchhHHHHhh-------CCCccccc--------------------cchHHHHHHHHHHHHHHH-
Q 003528 78 ----TKGIWMARCAGIEPCTLIMDLE-------GTDGRERG--------------------EDDTAFEKQSALFALAVS- 125 (813)
Q Consensus 78 ----~~g~~~~~~~~~e~~~~vld~~-------g~~~~e~~--------------------~~~~~~erQrv~iA~ALa- 125 (813)
..++.++.. ...+...+.++. +....+.. .....+|+||++||+|++
T Consensus 72 ~~~~~i~~~~q~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 72 RARLGIGYLPQEA-SIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred HHhccEEEecCCc-cccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 012222221 111112222222 11100000 001123999999999999
Q ss_pred --hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccccC
Q 003528 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (813)
Q Consensus 126 --dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~~ 203 (813)
++|||||||++||+.. ...+.++++++.++ |.|+|++|||++.+...+++++++.+ |+++..++..+...
T Consensus 151 ~p~llllDEPt~~LD~~~------~~~~~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~-G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIA------VQDIQKIIKILKDR-GIGVLITDHNVRETLSITDRAYIIYE-GKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CeEEEEeCHHHhhc
Confidence 9999999999999999 99999999998764 89999999999887766666666655 99998887766544
Q ss_pred C
Q 003528 204 E 204 (813)
Q Consensus 204 ~ 204 (813)
.
T Consensus 223 ~ 223 (232)
T cd03218 223 N 223 (232)
T ss_pred C
Confidence 3
No 39
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.6e-26 Score=239.56 Aligned_cols=173 Identities=12% Similarity=0.114 Sum_probs=128.7
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee------------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------------ 77 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~------------ 77 (813)
|+++|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~ 71 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRV--RRGEIFGLLGPNGAGKTTTIKMLTTLLK----PTSGRATVAGHDVVREPREV 71 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEE--CCCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCEecCcChHHH
Confidence 579999999976 67999999999 5899999999999999999999999987 88897310
Q ss_pred --ccceecccccCCCchhHHHHhh-------CCCccccc--------------------cchHHHHHHHHHHHHHHH---
Q 003528 78 --TKGIWMARCAGIEPCTLIMDLE-------GTDGRERG--------------------EDDTAFEKQSALFALAVS--- 125 (813)
Q Consensus 78 --~~g~~~~~~~~~e~~~~vld~~-------g~~~~e~~--------------------~~~~~~erQrv~iA~ALa--- 125 (813)
..++.++.. ...+...+.++. +....+.. .....+|+||++||+|++
T Consensus 72 ~~~i~~~~q~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p 150 (220)
T cd03265 72 RRRIGIVFQDL-SVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRP 150 (220)
T ss_pred hhcEEEecCCc-cccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 112222222 111222222222 21111000 001123999999999999
Q ss_pred hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcc
Q 003528 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (813)
Q Consensus 126 dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~ 199 (813)
+++|+||||++||+.. ...+.+.+.++.++.|.|+|++|||++.+...+++++++.+ |+++..+++.
T Consensus 151 ~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~-G~i~~~~~~~ 217 (220)
T cd03265 151 EVLFLDEPTIGLDPQT------RAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDH-GRIIAEGTPE 217 (220)
T ss_pred CEEEEcCCccCCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC-CEEEEeCChH
Confidence 9999999999999999 99999999998765589999999999988766666655555 9998887654
No 40
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.5e-26 Score=248.32 Aligned_cols=177 Identities=17% Similarity=0.162 Sum_probs=131.9
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ---------- 76 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q---------- 76 (813)
+++|++.|+++.|.+. ..+|+++||++ .+|++++|+||||||||||+++|+|+.+ |++|++.
T Consensus 2 ~~~l~~~~l~~~~~~~--~~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~~~~~~ 73 (274)
T PRK13647 2 DNIIEVEDLHFRYKDG--TKALKGLSLSI--PEGSKTALLGPNGAGKSTLLLHLNGIYL----PQRGRVKVMGREVNAEN 73 (274)
T ss_pred CceEEEEEEEEEeCCC--CeeeeeEEEEE--cCCCEEEEECCCCCcHHHHHHHHhcCCC----CCceEEEECCEECCCCC
Confidence 4579999999999632 57999999999 5899999999999999999999999997 8889731
Q ss_pred -----eccceecccccCCCchhHHHHhhC-------CCcccc--------------------ccchHHHHHHHHHHHHHH
Q 003528 77 -----TTKGIWMARCAGIEPCTLIMDLEG-------TDGRER--------------------GEDDTAFEKQSALFALAV 124 (813)
Q Consensus 77 -----~~~g~~~~~~~~~e~~~~vld~~g-------~~~~e~--------------------~~~~~~~erQrv~iA~AL 124 (813)
...++.++..........+.++.. ....+. ......+|+||++||+||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL 153 (274)
T PRK13647 74 EKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVL 153 (274)
T ss_pred HHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence 112333443211001112222221 111000 001112399999999999
Q ss_pred H---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcc
Q 003528 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (813)
Q Consensus 125 a---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~ 199 (813)
+ ++|||||||++||+.. ...+++++.++.++ |.|||++|||++.+...+++++++. +|+++..|++.
T Consensus 154 ~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~-g~tili~tH~~~~~~~~~d~i~~l~-~G~i~~~g~~~ 223 (274)
T PRK13647 154 AMDPDVIVLDEPMAYLDPRG------QETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLK-EGRVLAEGDKS 223 (274)
T ss_pred HcCCCEEEEECCCcCCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEECCHH
Confidence 9 9999999999999999 99999999999765 8999999999998876666666554 59999998764
No 41
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.8e-26 Score=241.57 Aligned_cols=176 Identities=17% Similarity=0.127 Sum_probs=131.0
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee------------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------------ 77 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~------------ 77 (813)
|+++|+++.|++ ..+|+++||++ .+|++++|+||||||||||||+|+|+.+ |++|+..-
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~~----p~~G~i~~~g~~~~~~~~~~ 71 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDV--RRGEILAIIGPSGSGKSTLLRLIVGLLR----PDSGEVLIDGEDISGLSEAE 71 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCEEccccChhh
Confidence 578999999975 67999999999 5899999999999999999999999997 88897310
Q ss_pred ------ccceecccccCCCchhHHHHhhCC--------Ccccc--------------------ccchHHHHHHHHHHHHH
Q 003528 78 ------TKGIWMARCAGIEPCTLIMDLEGT--------DGRER--------------------GEDDTAFEKQSALFALA 123 (813)
Q Consensus 78 ------~~g~~~~~~~~~e~~~~vld~~g~--------~~~e~--------------------~~~~~~~erQrv~iA~A 123 (813)
..+++++. ....+...+.++... ...+. ......+||||++||+|
T Consensus 72 ~~~~~~~i~~v~q~-~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 72 LYRLRRRMGMLFQS-GALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred HHHHhcceEEEccC-cccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 01222222 111122233333211 10000 00111239999999999
Q ss_pred HH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccc
Q 003528 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (813)
Q Consensus 124 La---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e 200 (813)
++ ++|||||||++||+.. ...+++.+.++.++.|+|||+||||++.+...+++++++.+ |+++..|++.+
T Consensus 151 l~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~-G~i~~~g~~~~ 223 (235)
T cd03261 151 LALDPELLLYDEPTAGLDPIA------SGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYD-GKIVAEGTPEE 223 (235)
T ss_pred HhcCCCEEEecCCcccCCHHH------HHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEEC-CeEEEecCHHH
Confidence 99 9999999999999999 99999999998764589999999999988766666665555 99999887766
Q ss_pred cc
Q 003528 201 AH 202 (813)
Q Consensus 201 ~~ 202 (813)
+.
T Consensus 224 ~~ 225 (235)
T cd03261 224 LR 225 (235)
T ss_pred Hc
Confidence 54
No 42
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.94 E-value=1.7e-26 Score=251.18 Aligned_cols=177 Identities=12% Similarity=0.144 Sum_probs=133.8
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---------- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---------- 77 (813)
++|+++|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 3 ~~i~~~~l~~~~~~---~~~l~~vsl~i--~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~ 73 (303)
T TIGR01288 3 VAIDLVGVSKSYGD---KVVVNDLSFTI--ARGECFGLLGPNGAGKSTIARMLLGMIS----PDRGKITVLGEPVPSRAR 73 (303)
T ss_pred cEEEEEeEEEEeCC---eEEEcceeEEE--cCCcEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCEECcccHH
Confidence 36999999999976 67999999999 5899999999999999999999999997 88898320
Q ss_pred ----ccceecccccCCCchhHHHHhh-------CCCccc--------------------cccchHHHHHHHHHHHHHHH-
Q 003528 78 ----TKGIWMARCAGIEPCTLIMDLE-------GTDGRE--------------------RGEDDTAFEKQSALFALAVS- 125 (813)
Q Consensus 78 ----~~g~~~~~~~~~e~~~~vld~~-------g~~~~e--------------------~~~~~~~~erQrv~iA~ALa- 125 (813)
..+++.+. ....+...+.++. +....+ .......+||||++||+||+
T Consensus 74 ~~~~~i~~v~q~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 74 LARVAIGVVPQF-DNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALIN 152 (303)
T ss_pred HHhhcEEEEecc-ccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 11222222 1211122222222 111110 00011123999999999999
Q ss_pred --hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccccc
Q 003528 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (813)
Q Consensus 126 --dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~ 202 (813)
++|||||||+|||+.. ...+.+.+.++.++ |.|||++|||++++...+++++++.+ |+++..|++.++.
T Consensus 153 ~p~lllLDEPt~gLD~~~------~~~l~~~l~~~~~~-g~til~~sH~~~~~~~~~d~i~~l~~-G~i~~~g~~~~~~ 223 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHA------RHLIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVLES-GRKIAEGRPHALI 223 (303)
T ss_pred CCCEEEEeCCCcCCCHHH------HHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEEC-CEEEEEcCHHHHH
Confidence 9999999999999999 99999999999764 89999999999988766666666655 9999999877654
No 43
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.9e-26 Score=255.11 Aligned_cols=181 Identities=13% Similarity=0.147 Sum_probs=134.8
Q ss_pred cEEEEeeeEEeccc-cccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee-----------
Q 003528 9 STQLIDGDGTFNVS-GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----------- 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~-~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----------- 76 (813)
||+++|++++|+.. ....+|+++||++ .+|++++|+||||||||||+++|+|+.+ |++|+..
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i--~~Gei~~iiG~nGsGKSTLlk~L~Gl~~----p~~G~I~~~g~~i~~~~~ 74 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHI--PAGEIFGVIGASGAGKSTLIRCINLLER----PTSGRVLVDGQDLTALSE 74 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEE--cCCCEEEEECCCCCcHHHHHHHHhCCCC----CCceEEEECCEECCcCCH
Confidence 58999999999721 1257999999999 5899999999999999999999999998 8889731
Q ss_pred -------eccceecccccCCCchhHHHHhh-------CCCcccc--------------------ccchHHHHHHHHHHHH
Q 003528 77 -------TTKGIWMARCAGIEPCTLIMDLE-------GTDGRER--------------------GEDDTAFEKQSALFAL 122 (813)
Q Consensus 77 -------~~~g~~~~~~~~~e~~~~vld~~-------g~~~~e~--------------------~~~~~~~erQrv~iA~ 122 (813)
...+++++... ..+...+.++. +....+. ......+||||++||+
T Consensus 75 ~~~~~~~~~ig~v~q~~~-l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAr 153 (343)
T PRK11153 75 KELRKARRQIGMIFQHFN-LLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIAR 153 (343)
T ss_pred HHHHHHhcCEEEEeCCCc-cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHH
Confidence 11223333221 11112222222 2211100 0111223999999999
Q ss_pred HHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcc
Q 003528 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (813)
Q Consensus 123 ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~ 199 (813)
||+ ++|||||||++||+.. ...+.++++++.++.|+|||++|||++.+...+++++++.+ |+++..|++.
T Consensus 154 aL~~~p~iLlLDEPts~LD~~~------~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~-G~i~~~g~~~ 226 (343)
T PRK11153 154 ALASNPKVLLCDEATSALDPAT------TRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDA-GRLVEQGTVS 226 (343)
T ss_pred HHHcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999 9999999999999999 99999999999766689999999999988766666655555 9999999877
Q ss_pred cccC
Q 003528 200 QAHM 203 (813)
Q Consensus 200 e~~~ 203 (813)
+++.
T Consensus 227 ~~~~ 230 (343)
T PRK11153 227 EVFS 230 (343)
T ss_pred HHHh
Confidence 7654
No 44
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.8e-26 Score=237.99 Aligned_cols=170 Identities=15% Similarity=0.168 Sum_probs=125.3
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee------------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------------ 77 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~------------ 77 (813)
|+++|++++|++ ..+|+++||++ .+|++++|+||||||||||+++|+|+.+ |++|+..-
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~~----p~~G~i~~~g~~~~~~~~~~ 71 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTV--EPGEFLALLGPSGCGKTTLLRLIAGLER----PDSGEILIDGRDVTGVPPER 71 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEE--cCCcEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEECCEEcCcCchhh
Confidence 478999999976 67999999999 5899999999999999999999999997 88897310
Q ss_pred -ccceecccccCCCchhHHHHhhC-------CCccc---c-----------------ccchHHHHHHHHHHHHHHH---h
Q 003528 78 -TKGIWMARCAGIEPCTLIMDLEG-------TDGRE---R-----------------GEDDTAFEKQSALFALAVS---D 126 (813)
Q Consensus 78 -~~g~~~~~~~~~e~~~~vld~~g-------~~~~e---~-----------------~~~~~~~erQrv~iA~ALa---d 126 (813)
..++.++.. ...+...+.++.. ..... + ......+||||++||+||+ +
T Consensus 72 ~~i~~v~q~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 150 (213)
T cd03259 72 RNIGMVFQDY-ALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPS 150 (213)
T ss_pred ccEEEEcCch-hhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 112222221 1111112222221 11000 0 0011123999999999999 9
Q ss_pred HhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEec
Q 003528 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (813)
Q Consensus 127 vLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g 196 (813)
+|||||||++||+.. ...+++.+.++.++.|.|||++|||++.+...+++++++.+ |+++..|
T Consensus 151 ~lllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 151 LLLLDEPLSALDAKL------REELREELKELQRELGITTIYVTHDQEEALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred EEEEcCCcccCCHHH------HHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999 99999999998765589999999999887766666665555 9987654
No 45
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2.1e-26 Score=240.59 Aligned_cols=180 Identities=15% Similarity=0.164 Sum_probs=131.0
Q ss_pred cEEEEeeeEEecccc-ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----------
Q 003528 9 STQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~-~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---------- 77 (813)
||+++|++++|++.. ...+|+++||++ .+|++++|+||||||||||+++|+|+.+ |++|+..-
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~~~~~~~ 74 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSV--PKGEIFGIIGRSGAGKSTLIRCINGLER----PTSGSVLVDGTDLTLLSG 74 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCEEcccCCH
Confidence 489999999997510 017999999999 5899999999999999999999999998 88897310
Q ss_pred --------ccceecccccCCCchhHHHHhh-------CCCcccc--------------------ccchHHHHHHHHHHHH
Q 003528 78 --------TKGIWMARCAGIEPCTLIMDLE-------GTDGRER--------------------GEDDTAFEKQSALFAL 122 (813)
Q Consensus 78 --------~~g~~~~~~~~~e~~~~vld~~-------g~~~~e~--------------------~~~~~~~erQrv~iA~ 122 (813)
..++..+. ....+...+.++. +...... ......+|+||++||+
T Consensus 75 ~~~~~~~~~i~~~~q~-~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~ 153 (233)
T cd03258 75 KELRKARRRIGMIFQH-FNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIAR 153 (233)
T ss_pred HHHHHHHhheEEEccC-cccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHH
Confidence 01122222 1111112222221 1110000 0011123999999999
Q ss_pred HHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcc
Q 003528 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (813)
Q Consensus 123 ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~ 199 (813)
|++ +++||||||++||+.. ...+.+.+.++.++.|+|||++|||++.+...+++++++.+ |+++..+++.
T Consensus 154 al~~~p~lllLDEP~~~LD~~~------~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~-G~i~~~~~~~ 226 (233)
T cd03258 154 ALANNPKVLLCDEATSALDPET------TQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEK-GEVVEEGTVE 226 (233)
T ss_pred HHhcCCCEEEecCCCCcCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEecCHH
Confidence 999 9999999999999999 99999999998765589999999999887765666665555 9999888765
Q ss_pred ccc
Q 003528 200 QAH 202 (813)
Q Consensus 200 e~~ 202 (813)
++.
T Consensus 227 ~~~ 229 (233)
T cd03258 227 EVF 229 (233)
T ss_pred HHh
Confidence 543
No 46
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.93 E-value=4.5e-26 Score=241.71 Aligned_cols=188 Identities=14% Similarity=0.145 Sum_probs=139.1
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----ccceec
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----TKGIWM 83 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----~~g~~~ 83 (813)
++|++.|+++.|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.. ..++++
T Consensus 3 ~~l~~~~l~~~~~~---~~vl~~vs~~i--~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~----p~~G~i~~~~~~~i~~v~ 73 (251)
T PRK09544 3 SLVSLENVSVSFGQ---RRVLSDVSLEL--KPGKILTLLGPNGAGKSTLVRVVLGLVA----PDEGVIKRNGKLRIGYVP 73 (251)
T ss_pred cEEEEeceEEEECC---ceEEEeEEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCccCEEEec
Confidence 47999999999976 57999999999 5899999999999999999999999997 89998421 123333
Q ss_pred ccccCCCch-hHHHHhhCCCc---cc-----------------cccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCc
Q 003528 84 ARCAGIEPC-TLIMDLEGTDG---RE-----------------RGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGR 139 (813)
Q Consensus 84 ~~~~~~e~~-~~vld~~g~~~---~e-----------------~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~ 139 (813)
+........ ..+.++..... .+ .......+|+||++||+|++ ++|||||||++||+
T Consensus 74 q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~ 153 (251)
T PRK09544 74 QKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDV 153 (251)
T ss_pred cccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 332111110 12222211110 00 01111224999999999999 99999999999999
Q ss_pred hhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccccCCccchhhhc
Q 003528 140 EQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMETPLSEFFN 212 (813)
Q Consensus 140 ~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~~~~~l~d~f~ 212 (813)
.. ...+++++.++.++.|.|||+||||++.+...+++++++ + ++|+..|++.++..+..+.++|.
T Consensus 154 ~~------~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l-~-~~i~~~g~~~~~~~~~~~~~~~~ 218 (251)
T PRK09544 154 NG------QVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCL-N-HHICCSGTPEVVSLHPEFISMFG 218 (251)
T ss_pred HH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE-C-CceEeeCCHHHHhCCHHHHHHhC
Confidence 99 999999999987655899999999999887666666555 5 57989998877765555555554
No 47
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3e-26 Score=249.64 Aligned_cols=183 Identities=14% Similarity=0.112 Sum_probs=135.0
Q ss_pred cEEEEeeeEEecccc--ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee---------
Q 003528 9 STQLIDGDGTFNVSG--IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT--------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~--~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~--------- 77 (813)
+|+++|+++.|++.. ...+|+++||++ .+|++++|+||||||||||+++|+|+.+ |++|+...
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i--~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~----p~~G~i~~~g~~~~~~~ 75 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEI--NQGEFIAIIGQTGSGKTTFIEHLNALLL----PDTGTIEWIFKDEKNKK 75 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEE--eCCCEEEEECCCCCcHHHHHHHHhCCCC----CCCcEEEEeceeccccc
Confidence 599999999996421 125999999999 5899999999999999999999999998 88897311
Q ss_pred ------------------------------ccceeccccc-C------CCchhHHHHhhCCCccc---------------
Q 003528 78 ------------------------------TKGIWMARCA-G------IEPCTLIMDLEGTDGRE--------------- 105 (813)
Q Consensus 78 ------------------------------~~g~~~~~~~-~------~e~~~~vld~~g~~~~e--------------- 105 (813)
..|++++... . .+++.+.....+.+..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 155 (305)
T PRK13651 76 KTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLD 155 (305)
T ss_pred ccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCC
Confidence 0133444321 1 11222211111211100
Q ss_pred ------cccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCc
Q 003528 106 ------RGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 176 (813)
Q Consensus 106 ------~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~ 176 (813)
.......+|+||++||+||+ ++|||||||++||+.. ...+.+++.++.+. |.|||+||||++.+
T Consensus 156 ~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tiiivtHd~~~~ 228 (305)
T PRK13651 156 ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQG------VKEILEIFDNLNKQ-GKTIILVTHDLDNV 228 (305)
T ss_pred hhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHHC-CCEEEEEeeCHHHH
Confidence 01111224999999999999 9999999999999999 99999999999754 99999999999988
Q ss_pred ccccCcceeeecCCeEEEecCcccccCCc
Q 003528 177 PLENLEPVLREDIQKIWDSVPKPQAHMET 205 (813)
Q Consensus 177 ~~~~~~~vll~~~GkI~~~g~~~e~~~~~ 205 (813)
...+++++++.+ |+|+..|++.+++.+.
T Consensus 229 ~~~adrv~vl~~-G~i~~~g~~~~~~~~~ 256 (305)
T PRK13651 229 LEWTKRTIFFKD-GKIIKDGDTYDILSDN 256 (305)
T ss_pred HHhCCEEEEEEC-CEEEEECCHHHHhcCH
Confidence 766666666644 9999999888776543
No 48
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.93 E-value=3.5e-26 Score=239.72 Aligned_cols=176 Identities=11% Similarity=0.135 Sum_probs=129.5
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-----------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----------- 77 (813)
+|+++|++++|++ ..+|+++||++ .+|++++|+||||||||||+++|+|+.+ |++|+..-
T Consensus 1 ~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~~----p~~G~i~~~g~~i~~~~~~ 71 (236)
T TIGR03864 1 ALEVAGLSFAYGA---RRALDDVSFTV--RPGEFVALLGPNGAGKSTLFSLLTRLYV----AQEGQISVAGHDLRRAPRA 71 (236)
T ss_pred CEEEEeeEEEECC---EEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCcC----CCceEEEECCEEcccCChh
Confidence 4889999999975 67999999999 5899999999999999999999999997 88897310
Q ss_pred ---ccceecccccCCCchhHHHHhh-------CCCccc--------------------cccchHHHHHHHHHHHHHHH--
Q 003528 78 ---TKGIWMARCAGIEPCTLIMDLE-------GTDGRE--------------------RGEDDTAFEKQSALFALAVS-- 125 (813)
Q Consensus 78 ---~~g~~~~~~~~~e~~~~vld~~-------g~~~~e--------------------~~~~~~~~erQrv~iA~ALa-- 125 (813)
..++..+. ........+.++. +....+ .......+|+||++||+|++
T Consensus 72 ~~~~i~~~~q~-~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 72 ALARLGVVFQQ-PTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred hhhhEEEeCCC-CCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 11222222 1111112222222 111000 00011123999999999999
Q ss_pred -hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccccc
Q 003528 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (813)
Q Consensus 126 -dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~ 202 (813)
+++||||||+|||+.. ...+.+.+.++.++.|.|+|++|||++.+. .+++++++ ++|+++..+++.+..
T Consensus 151 p~llllDEP~~~LD~~~------~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~i~~l-~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 151 PALLLLDEPTVGLDPAS------RAAIVAHVRALCRDQGLSVLWATHLVDEIE-ADDRLVVL-HRGRVLADGAAAELR 220 (236)
T ss_pred CCEEEEcCCccCCCHHH------HHHHHHHHHHHHHhCCCEEEEEecChhhHh-hCCEEEEE-eCCeEEEeCCHHHHH
Confidence 9999999999999999 999999999987545899999999999886 35555555 559999888766554
No 49
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.93 E-value=3.2e-26 Score=240.55 Aligned_cols=176 Identities=15% Similarity=0.113 Sum_probs=131.3
Q ss_pred cEEEEeeeEEec-cccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----------
Q 003528 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~-~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---------- 77 (813)
||++.|++++|+ + ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 1 ~l~~~~l~~~~~~~---~~il~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~ 71 (243)
T TIGR02315 1 MLEVENLSKVYPNG---KQALKNINLNI--NPGEFVAIIGPSGAGKSTLLRCINRLVE----PSSGSILLEGTDITKLRG 71 (243)
T ss_pred CeEEEeeeeecCCC---cceeecceEEE--cCCCEEEEECCCCCCHHHHHHHHhCCcC----CCccEEEECCEEhhhCCH
Confidence 489999999997 4 57999999999 5899999999999999999999999997 88897310
Q ss_pred --------ccceecccccCCCchhHHHHhhCCC---------------cccccc--------------------chHHHH
Q 003528 78 --------TKGIWMARCAGIEPCTLIMDLEGTD---------------GRERGE--------------------DDTAFE 114 (813)
Q Consensus 78 --------~~g~~~~~~~~~e~~~~vld~~g~~---------------~~e~~~--------------------~~~~~e 114 (813)
..+++++. ....+...+.++.... ..+... ....+|
T Consensus 72 ~~~~~~~~~i~~v~q~-~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~ 150 (243)
T TIGR02315 72 KKLRKLRRRIGMIFQH-YNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQ 150 (243)
T ss_pred HHHHHHHhheEEEcCC-CcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHH
Confidence 01222222 1122222333333110 000000 011139
Q ss_pred HHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCe
Q 003528 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (813)
Q Consensus 115 rQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~Gk 191 (813)
+||++||+|++ ++|||||||++||+.. ...+.+.+.++.++.|+|||+||||++.+...+++++++.+ |+
T Consensus 151 ~qrv~la~al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~-G~ 223 (243)
T TIGR02315 151 QQRVAIARALAQQPDLILADEPIASLDPKT------SKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKA-GE 223 (243)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEEC-CE
Confidence 99999999999 9999999999999999 99999999998765589999999999988766666666555 99
Q ss_pred EEEecCcccc
Q 003528 192 IWDSVPKPQA 201 (813)
Q Consensus 192 I~~~g~~~e~ 201 (813)
++..|++.++
T Consensus 224 i~~~~~~~~~ 233 (243)
T TIGR02315 224 IVFDGAPSEL 233 (243)
T ss_pred EEecCCHHHh
Confidence 9988876653
No 50
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.93 E-value=2.7e-26 Score=252.61 Aligned_cols=186 Identities=12% Similarity=0.080 Sum_probs=139.1
Q ss_pred CCccEEEEeeeEEeccc----------cccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCee
Q 003528 6 ECCSTQLIDGDGTFNVS----------GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS 75 (813)
Q Consensus 6 ~~~~Iel~dls~~y~~~----------~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~ 75 (813)
..++|+++|+++.|... +...+++++||++ .+|++++|+|+||||||||+++|+|+.. |++|++
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i--~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~----p~~G~I 78 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRL--YEGETLGVVGESGCGKSTFARAIIGLVK----ATDGEV 78 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEE--cCCCEEEEECCCCCCHHHHHHHHHCCCC----CCCcEE
Confidence 34689999999999631 1246899999999 5899999999999999999999999997 888972
Q ss_pred e------------------eccceeccccc-CCCchhHHHHhh---------CCCccccc--------------------
Q 003528 76 Q------------------TTKGIWMARCA-GIEPCTLIMDLE---------GTDGRERG-------------------- 107 (813)
Q Consensus 76 q------------------~~~g~~~~~~~-~~e~~~~vld~~---------g~~~~e~~-------------------- 107 (813)
. ...+++++... ...+...+.+++ +....+..
T Consensus 79 ~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~ 158 (331)
T PRK15079 79 AWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRY 158 (331)
T ss_pred EECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCC
Confidence 1 11234444321 122222233321 11111100
Q ss_pred -cchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcc
Q 003528 108 -EDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEP 183 (813)
Q Consensus 108 -~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~ 183 (813)
.....+|+|||+||+||+ ++||+||||++||+.. +..+++++.++.++.|.|+||||||++.+...++++
T Consensus 159 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~------~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri 232 (331)
T PRK15079 159 PHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSI------QAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRV 232 (331)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 011123999999999999 9999999999999999 999999999998766899999999999988767766
Q ss_pred eeeecCCeEEEecCcccccCC
Q 003528 184 VLREDIQKIWDSVPKPQAHME 204 (813)
Q Consensus 184 vll~~~GkI~~~g~~~e~~~~ 204 (813)
++|.+ |+|++.|++.+++.+
T Consensus 233 ~vl~~-G~ive~g~~~~i~~~ 252 (331)
T PRK15079 233 LVMYL-GHAVELGTYDEVYHN 252 (331)
T ss_pred EEEEC-CEEEEEcCHHHHHcC
Confidence 66655 999999988776643
No 51
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.5e-26 Score=239.68 Aligned_cols=180 Identities=14% Similarity=0.105 Sum_probs=133.8
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---------- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---------- 77 (813)
++|+++|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~~----p~~G~i~~~g~~~~~~~~ 74 (237)
T PRK11614 4 VMLSFDKVSAHYGK---IQALHEVSLHI--NQGEIVTLIGANGAGKTTLLGTLCGDPR----ATSGRIVFDGKDITDWQT 74 (237)
T ss_pred cEEEEEeEEEeeCC---ceeeeeeEEEE--cCCcEEEEECCCCCCHHHHHHHHcCCCC----CCCceEEECCEecCCCCH
Confidence 47999999999975 67999999999 5899999999999999999999999997 88897310
Q ss_pred ------ccceecccccCCCchhHHHHhhCCC----c-cc---cc------------------cchHHHHHHHHHHHHHHH
Q 003528 78 ------TKGIWMARCAGIEPCTLIMDLEGTD----G-RE---RG------------------EDDTAFEKQSALFALAVS 125 (813)
Q Consensus 78 ------~~g~~~~~~~~~e~~~~vld~~g~~----~-~e---~~------------------~~~~~~erQrv~iA~ALa 125 (813)
..++.++.. ...+...+.++.... . .. .. .....+|+||++||+|++
T Consensus 75 ~~~~~~~i~~~~q~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~ 153 (237)
T PRK11614 75 AKIMREAVAIVPEGR-RVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALM 153 (237)
T ss_pred HHHHHhCEEEeccCc-ccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHH
Confidence 011222221 111222233322110 0 00 00 001113999999999999
Q ss_pred ---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccccc
Q 003528 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (813)
Q Consensus 126 ---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~ 202 (813)
++|||||||++||+.. ...+.+.+.++.++ |.|||++|||++.+...+++.+++.+ |+++..|+++++.
T Consensus 154 ~~p~illlDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~-G~i~~~~~~~~~~ 225 (237)
T PRK11614 154 SQPRLLLLDEPSLGLAPII------IQQIFDTIEQLREQ-GMTIFLVEQNANQALKLADRGYVLEN-GHVVLEDTGDALL 225 (237)
T ss_pred hCCCEEEEcCccccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCcHHHHHhhCCEEEEEeC-CEEEeeCCHHHHh
Confidence 9999999999999999 99999999998764 89999999999887766666555555 9999999887765
Q ss_pred CCc
Q 003528 203 MET 205 (813)
Q Consensus 203 ~~~ 205 (813)
.+.
T Consensus 226 ~~~ 228 (237)
T PRK11614 226 ANE 228 (237)
T ss_pred cCH
Confidence 433
No 52
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.3e-26 Score=248.58 Aligned_cols=182 Identities=13% Similarity=0.102 Sum_probs=134.8
Q ss_pred cEEEEeeeEEecccc--ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----------
Q 003528 9 STQLIDGDGTFNVSG--IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ---------- 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~--~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q---------- 76 (813)
||+++|+++.|+... ...+|+++||++ .+|++++|+||||||||||+++|+|+.+ |++|+..
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i--~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~i~~~~ 74 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEV--KKGSYTALIGHTGSGKSTLLQHLNGLLQ----PTEGKVTVGDIVVSSTS 74 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEE--cCCCEEEEECCCCChHHHHHHHHhcCCC----CCCcEEEECCEECcccc
Confidence 589999999996421 125999999999 5899999999999999999999999998 8899721
Q ss_pred ---------eccceeccccc-C------CCchhHHHHhhCCCccc---------------------cccchHHHHHHHHH
Q 003528 77 ---------TTKGIWMARCA-G------IEPCTLIMDLEGTDGRE---------------------RGEDDTAFEKQSAL 119 (813)
Q Consensus 77 ---------~~~g~~~~~~~-~------~e~~~~vld~~g~~~~e---------------------~~~~~~~~erQrv~ 119 (813)
...|++++... . .+++.+.....+.+..+ .......+||||++
T Consensus 75 ~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrva 154 (288)
T PRK13643 75 KQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVA 154 (288)
T ss_pred ccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHH
Confidence 01234444321 1 11222221111211110 00111224999999
Q ss_pred HHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEec
Q 003528 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (813)
Q Consensus 120 iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g 196 (813)
||++|+ ++|||||||++||+.. +..+.+++.++.++ |.|||++|||++.+...+++++++.+ |+++..|
T Consensus 155 iA~aL~~~p~illLDEPt~gLD~~~------~~~l~~~l~~l~~~-g~til~vtHd~~~~~~~~dri~~l~~-G~i~~~g 226 (288)
T PRK13643 155 IAGILAMEPEVLVLDEPTAGLDPKA------RIEMMQLFESIHQS-GQTVVLVTHLMDDVADYADYVYLLEK-GHIISCG 226 (288)
T ss_pred HHHHHHhCCCEEEEECCccCCCHHH------HHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEEC-CEEEEEC
Confidence 999999 9999999999999999 99999999999764 89999999999988766666665555 9999999
Q ss_pred CcccccCC
Q 003528 197 PKPQAHME 204 (813)
Q Consensus 197 ~~~e~~~~ 204 (813)
++.+++..
T Consensus 227 ~~~~~~~~ 234 (288)
T PRK13643 227 TPSDVFQE 234 (288)
T ss_pred CHHHHHcC
Confidence 98877654
No 53
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=4.6e-26 Score=233.10 Aligned_cols=187 Identities=16% Similarity=0.143 Sum_probs=148.3
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee-----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----------- 76 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----------- 76 (813)
+|++++|++..|+. ..+|++|||++ .+|++++|+|+||+||||||++|+|+.+ +.+|++.
T Consensus 2 ~mL~v~~l~~~YG~---~~~L~gvsl~v--~~Geiv~llG~NGaGKTTlLkti~Gl~~----~~~G~I~~~G~dit~~p~ 72 (237)
T COG0410 2 PMLEVENLSAGYGK---IQALRGVSLEV--ERGEIVALLGRNGAGKTTLLKTIMGLVR----PRSGRIIFDGEDITGLPP 72 (237)
T ss_pred CceeEEeEeecccc---eeEEeeeeeEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCeeEEECCeecCCCCH
Confidence 57999999999987 78999999999 5899999999999999999999999998 8889831
Q ss_pred ---eccc-eecccccCCCchhHHHHhhCCCcc-----ccccc----hH------------------HHHHHHHHHHHHHH
Q 003528 77 ---TTKG-IWMARCAGIEPCTLIMDLEGTDGR-----ERGED----DT------------------AFEKQSALFALAVS 125 (813)
Q Consensus 77 ---~~~g-~~~~~~~~~e~~~~vld~~g~~~~-----e~~~~----~~------------------~~erQrv~iA~ALa 125 (813)
...| .+.++.....+.++|.+|+-+... ..... .. ..|+|.++|||||+
T Consensus 73 ~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm 152 (237)
T COG0410 73 HERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALM 152 (237)
T ss_pred HHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHh
Confidence 1112 233333345566667776533211 11111 11 12999999999999
Q ss_pred ---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccccc
Q 003528 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (813)
Q Consensus 126 ---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~ 202 (813)
++||||||+.||-|.- .+.|+++++++.++.|.||++|.++...+...+++.+++.. |+|+.+|+..++.
T Consensus 153 ~~PklLLLDEPs~GLaP~i------v~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~-Griv~~G~~~eL~ 225 (237)
T COG0410 153 SRPKLLLLDEPSEGLAPKI------VEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLEN-GRIVLSGTAAELL 225 (237)
T ss_pred cCCCEEEecCCccCcCHHH------HHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeC-CEEEEecCHHHHh
Confidence 9999999999999998 99999999999977789999999999998877777776666 9999999998887
Q ss_pred CCccchhh
Q 003528 203 METPLSEF 210 (813)
Q Consensus 203 ~~~~l~d~ 210 (813)
.+..+.+.
T Consensus 226 ~~~~v~~~ 233 (237)
T COG0410 226 ADPDVREA 233 (237)
T ss_pred cCHHHHHH
Confidence 76554433
No 54
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.1e-26 Score=240.64 Aligned_cols=184 Identities=11% Similarity=0.099 Sum_probs=134.4
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---------- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---------- 77 (813)
++|+++|++++|++ +.+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~~sl~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~~~~~~~ 72 (241)
T PRK10895 2 ATLTAKNLAKAYKG---RRVVEDVSLTV--NSGEIVGLLGPNGAGKTTTFYMVVGIVP----RDAGNIIIDDEDISLLPL 72 (241)
T ss_pred ceEEEeCcEEEeCC---EEEEeeeeEEE--cCCcEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEECCEECCCCCH
Confidence 37999999999975 67999999999 5899999999999999999999999997 88897310
Q ss_pred ------ccceecccccCCCchhHHHHhhCCC--------cccccc--------------------chHHHHHHHHHHHHH
Q 003528 78 ------TKGIWMARCAGIEPCTLIMDLEGTD--------GRERGE--------------------DDTAFEKQSALFALA 123 (813)
Q Consensus 78 ------~~g~~~~~~~~~e~~~~vld~~g~~--------~~e~~~--------------------~~~~~erQrv~iA~A 123 (813)
..+...+.. ...+...+.++.... ..+... ....+|+||++||+|
T Consensus 73 ~~~~~~~i~~~~q~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 151 (241)
T PRK10895 73 HARARRGIGYLPQEA-SIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARA 151 (241)
T ss_pred HHHHHhCeEEeccCC-cccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHH
Confidence 011222221 111222333332110 000000 011139999999999
Q ss_pred HH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccc
Q 003528 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (813)
Q Consensus 124 La---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e 200 (813)
++ ++||+||||++||+.. ...+.+++.++.+ .|.|+|++|||++.+...+++++++.+ |+++..|++.+
T Consensus 152 l~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~-~g~tiii~sH~~~~~~~~~d~v~~l~~-G~i~~~~~~~~ 223 (241)
T PRK10895 152 LAANPKFILLDEPFAGVDPIS------VIDIKRIIEHLRD-SGLGVLITDHNVRETLAVCERAYIVSQ-GHLIAHGTPTE 223 (241)
T ss_pred HhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHh-cCCEEEEEEcCHHHHHHhcCEEEEEeC-CeEEeeCCHHH
Confidence 99 9999999999999999 9999999999875 489999999999877766666655554 99999888776
Q ss_pred ccCCccchh
Q 003528 201 AHMETPLSE 209 (813)
Q Consensus 201 ~~~~~~l~d 209 (813)
+.....+.+
T Consensus 224 ~~~~~~~~~ 232 (241)
T PRK10895 224 ILQDEHVKR 232 (241)
T ss_pred HhcChhHhH
Confidence 654333333
No 55
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.8e-26 Score=245.77 Aligned_cols=184 Identities=14% Similarity=0.057 Sum_probs=134.8
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ---------- 76 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q---------- 76 (813)
+++|+++|+++.|++.....+|+++||++ .+|++++|+|+||||||||+++|+|+.+ |.+|++.
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~l~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~i~~~~ 75 (279)
T PRK13650 2 SNIIEVKNLTFKYKEDQEKYTLNDVSFHV--KQGEWLSIIGHNGSGKSTTVRLIDGLLE----AESGQIIIDGDLLTEEN 75 (279)
T ss_pred CceEEEEeEEEEcCCCCcCeeeeeeEEEE--eCCCEEEEECCCCCCHHHHHHHHhcCCC----CCCcEEEECCEECCcCc
Confidence 34799999999996421145999999999 5899999999999999999999999997 8999731
Q ss_pred -----eccceecccccCCCchhHHHHhhC-------CCcccccc--------------------chHHHHHHHHHHHHHH
Q 003528 77 -----TTKGIWMARCAGIEPCTLIMDLEG-------TDGRERGE--------------------DDTAFEKQSALFALAV 124 (813)
Q Consensus 77 -----~~~g~~~~~~~~~e~~~~vld~~g-------~~~~e~~~--------------------~~~~~erQrv~iA~AL 124 (813)
...++.++..........+.+++. ....+..+ ....+|+||++||+|+
T Consensus 76 ~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral 155 (279)
T PRK13650 76 VWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAV 155 (279)
T ss_pred HHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 112333343211111122333322 11111000 0112399999999999
Q ss_pred H---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccc
Q 003528 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (813)
Q Consensus 125 a---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~ 201 (813)
+ ++|||||||++||+.. ...+++.+.++.++.|+|||+||||++.+. .+++++++ ++|+++..|++.++
T Consensus 156 ~~~p~lLlLDEPt~~LD~~~------~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l-~~G~i~~~g~~~~~ 227 (279)
T PRK13650 156 AMRPKIIILDEATSMLDPEG------RLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVM-KNGQVESTSTPREL 227 (279)
T ss_pred HcCCCEEEEECCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEE-ECCEEEEECCHHHH
Confidence 9 9999999999999999 999999999997656899999999998774 45555555 55999999988776
Q ss_pred cCC
Q 003528 202 HME 204 (813)
Q Consensus 202 ~~~ 204 (813)
+..
T Consensus 228 ~~~ 230 (279)
T PRK13650 228 FSR 230 (279)
T ss_pred HcC
Confidence 544
No 56
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=1.2e-26 Score=244.97 Aligned_cols=185 Identities=17% Similarity=0.143 Sum_probs=149.4
Q ss_pred CccEEEEeeeEEecccc---------------------ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003528 7 CCSTQLIDGDGTFNVSG---------------------IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNF 65 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~---------------------~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~ 65 (813)
+..|+++|++|-|+... ...-++++||++ ..|+|..|+|-+|||||||+++|+++..
T Consensus 2 ~~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v--~~GeIfViMGLSGSGKSTLvR~~NrLie 79 (386)
T COG4175 2 MVKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDV--EEGEIFVIMGLSGSGKSTLVRLLNRLIE 79 (386)
T ss_pred CceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeee--cCCeEEEEEecCCCCHHHHHHHHhccCC
Confidence 34699999999997521 112478999999 5899999999999999999999999998
Q ss_pred CCCCCCCCeee-------------------eccceeccc------ccCCCchhHHHHhhCCCccccccchHH--------
Q 003528 66 REMDAFKGRSQ-------------------TTKGIWMAR------CAGIEPCTLIMDLEGTDGRERGEDDTA-------- 112 (813)
Q Consensus 66 ~~m~p~sG~~q-------------------~~~g~~~~~------~~~~e~~~~vld~~g~~~~e~~~~~~~-------- 112 (813)
|++|+.. ...+++||. .+..+|..|.+++-|.+..++.+....
T Consensus 80 ----pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~ 155 (386)
T COG4175 80 ----PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLE 155 (386)
T ss_pred ----CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCch
Confidence 9999821 122344433 233455556666666666555443322
Q ss_pred ------------HHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcc
Q 003528 113 ------------FEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (813)
Q Consensus 113 ------------~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~ 177 (813)
+|+|||.+||||+ +|||+|||+++|||-- +..+.+.+++|.++.++||+|||||++++.
T Consensus 156 ~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLI------R~~mQdeLl~Lq~~l~KTIvFitHDLdEAl 229 (386)
T COG4175 156 GYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLI------RTEMQDELLELQAKLKKTIVFITHDLDEAL 229 (386)
T ss_pred hhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHH------HHHHHHHHHHHHHHhCCeEEEEecCHHHHH
Confidence 2999999999999 9999999999999998 999999999999888999999999999999
Q ss_pred cccCcceeeecCCeEEEecCcccccCC
Q 003528 178 LENLEPVLREDIQKIWDSVPKPQAHME 204 (813)
Q Consensus 178 ~~~~~~vll~~~GkI~~~g~~~e~~~~ 204 (813)
++.+++.+|.+ |+|+..|+|++++.+
T Consensus 230 riG~rIaimkd-G~ivQ~Gtp~eIl~~ 255 (386)
T COG4175 230 RIGDRIAIMKD-GEIVQVGTPEEILLN 255 (386)
T ss_pred hccceEEEecC-CeEEEeCCHHHHHcC
Confidence 88888888877 999999999998754
No 57
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.2e-26 Score=250.66 Aligned_cols=186 Identities=11% Similarity=0.099 Sum_probs=135.8
Q ss_pred cEEEEeeeEEecccc-ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee-----------
Q 003528 9 STQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----------- 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~-~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----------- 76 (813)
+|+++|+++.|+... ...+|++|||++ .+|++++|+|+||||||||+++|+|+++....+++|+..
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i--~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~ 80 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSV--KQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEE--CCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence 699999999996521 136999999999 589999999999999999999999998621113667621
Q ss_pred --------eccceeccccc-CCCchhHHH----H----------------------hhCCCcc-----ccccchHHHHHH
Q 003528 77 --------TTKGIWMARCA-GIEPCTLIM----D----------------------LEGTDGR-----ERGEDDTAFEKQ 116 (813)
Q Consensus 77 --------~~~g~~~~~~~-~~e~~~~vl----d----------------------~~g~~~~-----e~~~~~~~~erQ 116 (813)
...+++++... ...+...+. + ..|+... ........+|+|
T Consensus 81 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~Q 160 (326)
T PRK11022 81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ 160 (326)
T ss_pred HHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence 01234444431 122111111 1 1111110 001111224999
Q ss_pred HHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEE
Q 003528 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (813)
Q Consensus 117 rv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~ 193 (813)
||+||+||+ ++||+||||++||+.. +..++++++++.++.|.|+||||||++.+...++++++|.+ |+|+
T Consensus 161 Rv~iArAL~~~P~llilDEPts~LD~~~------~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~-G~iv 233 (326)
T PRK11022 161 RVMIAMAIACRPKLLIADEPTTALDVTI------QAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYA-GQVV 233 (326)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEE
Confidence 999999999 9999999999999999 99999999999876799999999999988766776666655 9999
Q ss_pred EecCcccccC
Q 003528 194 DSVPKPQAHM 203 (813)
Q Consensus 194 ~~g~~~e~~~ 203 (813)
+.|++.+++.
T Consensus 234 e~g~~~~~~~ 243 (326)
T PRK11022 234 ETGKAHDIFR 243 (326)
T ss_pred EECCHHHHhh
Confidence 9998877654
No 58
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.8e-26 Score=251.04 Aligned_cols=184 Identities=17% Similarity=0.104 Sum_probs=137.5
Q ss_pred ccEEEEeeeEEeccc-------cccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----
Q 003528 8 CSTQLIDGDGTFNVS-------GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ---- 76 (813)
Q Consensus 8 ~~Iel~dls~~y~~~-------~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q---- 76 (813)
++|+++|+++.|... +...+|++|||++ .+|++++|+|+||||||||+++|+|+.+ |++|++.
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i--~~Ge~~~IvG~sGsGKSTLl~~l~gl~~----p~~G~i~~~g~ 77 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTL--ERGKTLAVVGESGCGKSTLARLLTMIET----PTGGELYYQGQ 77 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEE--CCCCEEEEECCCCCcHHHHHHHHHcCCC----CCCcEEEECCE
Confidence 479999999999631 0146899999999 5899999999999999999999999997 8888721
Q ss_pred --------------eccceeccccc-CCCchhHHHHhh--------CCCcccc---------------------ccchHH
Q 003528 77 --------------TTKGIWMARCA-GIEPCTLIMDLE--------GTDGRER---------------------GEDDTA 112 (813)
Q Consensus 77 --------------~~~g~~~~~~~-~~e~~~~vld~~--------g~~~~e~---------------------~~~~~~ 112 (813)
...+++++... .+.+...+.+++ +....+. ......
T Consensus 78 ~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSg 157 (327)
T PRK11308 78 DLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSG 157 (327)
T ss_pred EcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCH
Confidence 11234444431 122212221111 1111110 011122
Q ss_pred HHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecC
Q 003528 113 FEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDI 189 (813)
Q Consensus 113 ~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~ 189 (813)
+|+||++||+||+ ++||+||||++||+.. +..|++++.++.++.|.|+||||||++.+...++++++|.+
T Consensus 158 Gq~QRv~iArAL~~~P~lLilDEPts~LD~~~------~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~- 230 (327)
T PRK11308 158 GQRQRIAIARALMLDPDVVVADEPVSALDVSV------QAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYL- 230 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCccCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC-
Confidence 4999999999999 9999999999999999 99999999999876799999999999988766666666655
Q ss_pred CeEEEecCcccccCC
Q 003528 190 QKIWDSVPKPQAHME 204 (813)
Q Consensus 190 GkI~~~g~~~e~~~~ 204 (813)
|+|++.|++.+++.+
T Consensus 231 G~ive~g~~~~~~~~ 245 (327)
T PRK11308 231 GRCVEKGTKEQIFNN 245 (327)
T ss_pred CEEEEECCHHHHhcC
Confidence 999999988777643
No 59
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.9e-26 Score=247.48 Aligned_cols=183 Identities=13% Similarity=0.089 Sum_probs=135.6
Q ss_pred cEEEEeeeEEecccc--ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee---------
Q 003528 9 STQLIDGDGTFNVSG--IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT--------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~--~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~--------- 77 (813)
.|+++|+++.|++.. ...+|+++||++ .+|++++|+||||||||||+++|+|+.. |++|++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~----p~~G~i~~~g~~i~~~~ 75 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEF--EQGKYYAIVGQTGSGKSTLIQNINALLK----PTTGTVTVDDITITHKT 75 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCCC----CCCcEEEECCEECcccc
Confidence 489999999996411 136999999999 5899999999999999999999999998 88897210
Q ss_pred ----------ccceeccccc-CCCchhHHHHhhC-------CCccc---------------------cccchHHHHHHHH
Q 003528 78 ----------TKGIWMARCA-GIEPCTLIMDLEG-------TDGRE---------------------RGEDDTAFEKQSA 118 (813)
Q Consensus 78 ----------~~g~~~~~~~-~~e~~~~vld~~g-------~~~~e---------------------~~~~~~~~erQrv 118 (813)
..|++++... ...+ ..+.+++. ....+ .......+|+||+
T Consensus 76 ~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 76 KDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred ccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH
Confidence 1234444321 1111 12233221 11100 1111223499999
Q ss_pred HHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEe
Q 003528 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (813)
Q Consensus 119 ~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~ 195 (813)
+||+||+ ++|||||||++||+.. ...+.++++++.++.|+|||+||||++.+...+++++++. .|+|+..
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~------~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~-~G~i~~~ 227 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQS------KRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMK-EGSIVSQ 227 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHH------HHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEE-CCEEEEE
Confidence 9999999 9999999999999999 9999999999976568999999999998776566555555 4999999
Q ss_pred cCcccccCCc
Q 003528 196 VPKPQAHMET 205 (813)
Q Consensus 196 g~~~e~~~~~ 205 (813)
|++.+++...
T Consensus 228 g~~~~~~~~~ 237 (286)
T PRK13646 228 TSPKELFKDK 237 (286)
T ss_pred CCHHHHHhCH
Confidence 9887766543
No 60
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.93 E-value=4.1e-26 Score=235.07 Aligned_cols=170 Identities=16% Similarity=0.158 Sum_probs=125.8
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee------------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------------ 77 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~------------ 77 (813)
|+++|+++.|++ ..+++++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~~----~~~G~v~~~g~~~~~~~~~~ 71 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDI--ADGEFVVLLGPSGCGKTTTLRMIAGLEE----PTSGRIYIGGRDVTDLPPKD 71 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCEECCcCCccc
Confidence 478999999976 67999999999 5899999999999999999999999997 88897310
Q ss_pred -ccceecccccCCCchhHHHHhh-------CCCccccc--------------------cchHHHHHHHHHHHHHHH---h
Q 003528 78 -TKGIWMARCAGIEPCTLIMDLE-------GTDGRERG--------------------EDDTAFEKQSALFALAVS---D 126 (813)
Q Consensus 78 -~~g~~~~~~~~~e~~~~vld~~-------g~~~~e~~--------------------~~~~~~erQrv~iA~ALa---d 126 (813)
..++..+.. ...+...+.++. +....+.. .....+|+||++||+|++ +
T Consensus 72 ~~i~~~~q~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 150 (213)
T cd03301 72 RDIAMVFQNY-ALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPK 150 (213)
T ss_pred ceEEEEecCh-hhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 012222221 111112222222 11111100 001123999999999999 9
Q ss_pred HhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEec
Q 003528 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (813)
Q Consensus 127 vLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g 196 (813)
++||||||++||+.. ...+.+.+.++.++.|.|+|++|||++.+...+++++++.+ |+++..|
T Consensus 151 llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 151 VFLMDEPLSNLDAKL------RVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred EEEEcCCcccCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEEC-CEEEecC
Confidence 999999999999999 99999999998765589999999999887766666666554 9998754
No 61
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.93 E-value=4.8e-26 Score=247.55 Aligned_cols=176 Identities=15% Similarity=0.131 Sum_probs=134.1
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------ 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------ 76 (813)
+++++|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..
T Consensus 2 ~l~~~~l~~~~~~---~~~l~~is~~i--~~Gei~~l~G~NGaGKTTLl~~l~Gl~~----~~~G~i~i~g~~~~~~~~~ 72 (301)
T TIGR03522 2 SIRVSSLTKLYGT---QNALDEVSFEA--QKGRIVGFLGPNGAGKSTTMKIITGYLP----PDSGSVQVCGEDVLQNPKE 72 (301)
T ss_pred EEEEEEEEEEECC---EEEEEEeEEEE--eCCeEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCEEcccChHH
Confidence 5999999999976 67999999999 5899999999999999999999999997 8999731
Q ss_pred --eccceecccccCCCchhHHHHhh-------CCCccc---cc-----------------cchHHHHHHHHHHHHHHH--
Q 003528 77 --TTKGIWMARCAGIEPCTLIMDLE-------GTDGRE---RG-----------------EDDTAFEKQSALFALAVS-- 125 (813)
Q Consensus 77 --~~~g~~~~~~~~~e~~~~vld~~-------g~~~~e---~~-----------------~~~~~~erQrv~iA~ALa-- 125 (813)
...|+.++.. ...+...+.++. |.+..+ +. .....+|+||++||+|++
T Consensus 73 ~~~~ig~~~q~~-~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 73 VQRNIGYLPEHN-PLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred HHhceEEecCCC-CCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 1123333322 222222233322 222110 00 011123999999999999
Q ss_pred -hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccccC
Q 003528 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (813)
Q Consensus 126 -dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~~ 203 (813)
++|||||||+|||+.+ ++.+.+.+.++.+ ++|||++||+++++...|++++++.+ |+++..|++.++..
T Consensus 152 p~lliLDEPt~gLD~~~------~~~l~~~l~~~~~--~~tiii~sH~l~~~~~~~d~i~~l~~-G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQ------LVEIRNVIKNIGK--DKTIILSTHIMQEVEAICDRVIIINK-GKIVADKKLDELSA 221 (301)
T ss_pred CCEEEEcCCcccCCHHH------HHHHHHHHHHhcC--CCEEEEEcCCHHHHHHhCCEEEEEEC-CEEEEeCCHHHHHH
Confidence 9999999999999999 9999999999853 68999999999988876766666655 99999998877643
No 62
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=6.4e-26 Score=240.95 Aligned_cols=175 Identities=17% Similarity=0.224 Sum_probs=131.0
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----------c
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----------T 78 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----------~ 78 (813)
||+++|+++.|++ ..+++++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..- .
T Consensus 1 ml~~~~l~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~ 71 (255)
T PRK11248 1 MLQISHLYADYGG---KPALEDINLTL--ESGELLVVLGPSGCGKTTLLNLIAGFVP----YQHGSITLDGKPVEGPGAE 71 (255)
T ss_pred CEEEEEEEEEeCC---eeeEeeeeEEE--CCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEECCEECCCCCCc
Confidence 4899999999975 67999999999 5899999999999999999999999997 88998321 1
Q ss_pred cceecccccCCCchhHHHHhh-------CCCcccc--------------------ccchHHHHHHHHHHHHHHH---hHh
Q 003528 79 KGIWMARCAGIEPCTLIMDLE-------GTDGRER--------------------GEDDTAFEKQSALFALAVS---DIV 128 (813)
Q Consensus 79 ~g~~~~~~~~~e~~~~vld~~-------g~~~~e~--------------------~~~~~~~erQrv~iA~ALa---dvL 128 (813)
.++.++.. ...+...+.++. +....+. ......+|+||++||+|++ ++|
T Consensus 72 ~~~v~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~ll 150 (255)
T PRK11248 72 RGVVFQNE-GLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLL 150 (255)
T ss_pred EEEEeCCC-ccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 22333322 111112222222 1111000 0111123999999999999 999
Q ss_pred hhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeec-CCeEEEecCcc
Q 003528 129 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED-IQKIWDSVPKP 199 (813)
Q Consensus 129 LLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~-~GkI~~~g~~~ 199 (813)
||||||++||+.. ...+.+++.++.++.|.|||+||||++.+...+++++++.+ +|+|+..++.+
T Consensus 151 lLDEPt~~LD~~~------~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 151 LLDEPFGALDAFT------REQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred EEeCCCccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 9999999999999 99999999998654589999999999988776777666653 59999887643
No 63
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.93 E-value=4.9e-26 Score=235.16 Aligned_cols=168 Identities=13% Similarity=0.155 Sum_probs=122.6
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-----------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----------- 77 (813)
||+++|++++|++. ...+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 1 ~l~~~~l~~~~~~~-~~~il~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~ 73 (216)
T TIGR00960 1 MIRFEQVSKAYPGG-HQPALDNLNFHI--TKGEMVFLVGHSGAGKSTFLKLILGIEK----PTRGKIRFNGQDLTRLRGR 73 (216)
T ss_pred CeEEEEEEEEecCC-CeeEEEeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCEehhhcChh
Confidence 48999999999642 136999999999 5899999999999999999999999997 88897310
Q ss_pred -------ccceecccccCCCchhHHHHhh-------CCCcccc--------------------ccchHHHHHHHHHHHHH
Q 003528 78 -------TKGIWMARCAGIEPCTLIMDLE-------GTDGRER--------------------GEDDTAFEKQSALFALA 123 (813)
Q Consensus 78 -------~~g~~~~~~~~~e~~~~vld~~-------g~~~~e~--------------------~~~~~~~erQrv~iA~A 123 (813)
..++.++.. ...+...+.++. +....+. ......+|+||++||+|
T Consensus 74 ~~~~~~~~i~~~~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara 152 (216)
T TIGR00960 74 EIPFLRRHIGMVFQDH-RLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARA 152 (216)
T ss_pred HHHHHHHhceEEecCc-cccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 112222221 111112222222 1111000 00111239999999999
Q ss_pred HH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeE
Q 003528 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (813)
Q Consensus 124 La---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI 192 (813)
|+ ++|||||||++||+.. ...+.+.+.++.++ |.|||+||||++.+...+++++++.+ |+|
T Consensus 153 l~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~-G~i 216 (216)
T TIGR00960 153 IVHKPPLLLADEPTGNLDPEL------SRDIMRLFEEFNRR-GTTVLVATHDINLVETYRHRTLTLSR-GRL 216 (216)
T ss_pred HhcCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeC-CcC
Confidence 99 9999999999999999 99999999998764 89999999999988765666555544 764
No 64
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=5.7e-26 Score=244.06 Aligned_cols=181 Identities=13% Similarity=0.119 Sum_probs=134.5
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---------- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---------- 77 (813)
++|++.|++++|++. ..+|+++||++ .+|++++|+|+||||||||+++|+|+.+ |++|+..-
T Consensus 2 ~~l~~~~l~~~~~~~--~~~l~~vsl~i--~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~ 73 (277)
T PRK13652 2 HLIETRDLCYSYSGS--KEALNNINFIA--PRNSRIAVIGPNGAGKSTLFRHFNGILK----PTSGSVLIRGEPITKENI 73 (277)
T ss_pred ceEEEEEEEEEeCCC--CceeeEeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCCC----CCceEEEECCEECCcCCH
Confidence 479999999999642 46999999999 5899999999999999999999999997 89997310
Q ss_pred -----ccceecccccCCCchhHHHHhh-------CCCccc--------------------cccchHHHHHHHHHHHHHHH
Q 003528 78 -----TKGIWMARCAGIEPCTLIMDLE-------GTDGRE--------------------RGEDDTAFEKQSALFALAVS 125 (813)
Q Consensus 78 -----~~g~~~~~~~~~e~~~~vld~~-------g~~~~e--------------------~~~~~~~~erQrv~iA~ALa 125 (813)
..+++++..........+.++. +.+... .......+|+||++||+||+
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~ 153 (277)
T PRK13652 74 REVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIA 153 (277)
T ss_pred HHHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 1123333221000011222222 111100 00111223999999999999
Q ss_pred ---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccccc
Q 003528 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (813)
Q Consensus 126 ---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~ 202 (813)
++||+||||++||+.. ...+.+++.++.++.|.|||++|||++.+...+++++++.+ |+++..|++.+++
T Consensus 154 ~~p~llilDEPt~gLD~~~------~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~-G~i~~~g~~~~~~ 226 (277)
T PRK13652 154 MEPQVLVLDEPTAGLDPQG------VKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDK-GRIVAYGTVEEIF 226 (277)
T ss_pred cCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEEC-CeEEEECCHHHHh
Confidence 9999999999999999 99999999999775589999999999988766666655555 9999999887765
Q ss_pred C
Q 003528 203 M 203 (813)
Q Consensus 203 ~ 203 (813)
.
T Consensus 227 ~ 227 (277)
T PRK13652 227 L 227 (277)
T ss_pred c
Confidence 4
No 65
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.93 E-value=8.1e-26 Score=240.59 Aligned_cols=176 Identities=18% Similarity=0.180 Sum_probs=132.7
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee---------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT--------- 77 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~--------- 77 (813)
.++|+++|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.-
T Consensus 10 ~~~l~i~~l~~~~~~---~~il~~isl~i--~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~----p~~G~i~~~g~~~~~~~ 80 (257)
T PRK11247 10 GTPLLLNAVSKRYGE---RTVLNQLDLHI--PAGQFVAVVGRSGCGKSTLLRLLAGLET----PSAGELLAGTAPLAEAR 80 (257)
T ss_pred CCcEEEEEEEEEECC---cceeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCCC----CCCeEEEECCEEHHHhh
Confidence 457999999999976 67999999999 5899999999999999999999999997 88998421
Q ss_pred -ccceecccccCCCchhHHHHhhCCC--c--c-----------------ccccchHHHHHHHHHHHHHHH---hHhhhcc
Q 003528 78 -TKGIWMARCAGIEPCTLIMDLEGTD--G--R-----------------ERGEDDTAFEKQSALFALAVS---DIVLINM 132 (813)
Q Consensus 78 -~~g~~~~~~~~~e~~~~vld~~g~~--~--~-----------------e~~~~~~~~erQrv~iA~ALa---dvLLLDE 132 (813)
..+++++.. ...+...+.++.... . . ........+||||++||+|++ ++|||||
T Consensus 81 ~~i~~v~q~~-~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDE 159 (257)
T PRK11247 81 EDTRLMFQDA-RLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDE 159 (257)
T ss_pred CceEEEecCc-cCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 122333322 222223334433211 0 0 001111224999999999999 9999999
Q ss_pred CCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcc
Q 003528 133 WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (813)
Q Consensus 133 PtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~ 199 (813)
||++||+.. ...+.+++.++.++.|.|||+||||++.+...+++++++.+ |+|+..++.+
T Consensus 160 Pt~~LD~~~------~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~-G~i~~~~~~~ 219 (257)
T PRK11247 160 PLGALDALT------RIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEE-GKIGLDLTVD 219 (257)
T ss_pred CCCCCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEeecccc
Confidence 999999999 99999999998665589999999999987666665555554 9999887654
No 66
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.7e-26 Score=244.63 Aligned_cols=179 Identities=13% Similarity=0.024 Sum_probs=132.0
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-----------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----------- 77 (813)
||+++|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.-
T Consensus 1 ml~~~~l~~~~~~---~~il~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~i~~~~~~ 71 (271)
T PRK13638 1 MLATSDLWFRYQD---EPVLKGLNLDF--SLSPVTGLVGANGCGKSTLFMNLSGLLR----PQKGAVLWQGKPLDYSKRG 71 (271)
T ss_pred CeEEEEEEEEcCC---cccccceEEEE--cCCCEEEEECCCCCCHHHHHHHHcCCCC----CCccEEEECCEEcccccCC
Confidence 5899999999975 67999999999 5899999999999999999999999997 88997310
Q ss_pred ------ccceecccccC-------CCchhHHHHhhCCCcccc--------------------ccchHHHHHHHHHHHHHH
Q 003528 78 ------TKGIWMARCAG-------IEPCTLIMDLEGTDGRER--------------------GEDDTAFEKQSALFALAV 124 (813)
Q Consensus 78 ------~~g~~~~~~~~-------~e~~~~vld~~g~~~~e~--------------------~~~~~~~erQrv~iA~AL 124 (813)
..+++++.... .+++.+.....+....+. ......+|+||++||+||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL 151 (271)
T PRK13638 72 LLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGAL 151 (271)
T ss_pred HHHHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHH
Confidence 01222222110 011111111111111100 001112399999999999
Q ss_pred H---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccc
Q 003528 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (813)
Q Consensus 125 a---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~ 201 (813)
+ ++|||||||++||+.. ...+.+++.++.++ |.|||+||||++.+...+++++++.+ |+++..|++.++
T Consensus 152 ~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~d~i~~l~~-G~i~~~g~~~~~ 223 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAG------RTQMIAIIRRIVAQ-GNHVIISSHDIDLIYEISDAVYVLRQ-GQILTHGAPGEV 223 (271)
T ss_pred HcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEeCCHHHH
Confidence 9 9999999999999999 99999999998764 89999999999988766666666555 999999987766
Q ss_pred cCC
Q 003528 202 HME 204 (813)
Q Consensus 202 ~~~ 204 (813)
+..
T Consensus 224 ~~~ 226 (271)
T PRK13638 224 FAC 226 (271)
T ss_pred hcC
Confidence 543
No 67
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=5e-26 Score=245.84 Aligned_cols=183 Identities=14% Similarity=0.109 Sum_probs=135.9
Q ss_pred cEEEEeeeEEecccc--ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----------
Q 003528 9 STQLIDGDGTFNVSG--IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ---------- 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~--~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q---------- 76 (813)
+|+++|+++.|++.. ...+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i--~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~----p~~G~i~~~g~~~~~~~ 75 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEI--EDGEFVGLIGHTGSGKSTLIQHLNGLLK----PTSGKIIIDGVDITDKK 75 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEE--cCCCEEEEECCCCCcHHHHHHHHhcCCC----CCccEEEECCEECCCcC
Confidence 599999999996411 136999999999 5899999999999999999999999998 8889731
Q ss_pred -------eccceeccccc-------CCCchhHHH------------------HhhCCC--c--cccccchHHHHHHHHHH
Q 003528 77 -------TTKGIWMARCA-------GIEPCTLIM------------------DLEGTD--G--RERGEDDTAFEKQSALF 120 (813)
Q Consensus 77 -------~~~g~~~~~~~-------~~e~~~~vl------------------d~~g~~--~--~e~~~~~~~~erQrv~i 120 (813)
...|++++... ..+++.+.. +..|+. . .........+|+||++|
T Consensus 76 ~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~i 155 (287)
T PRK13637 76 VKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAI 155 (287)
T ss_pred ccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHH
Confidence 01233444321 011121111 111221 0 00111223349999999
Q ss_pred HHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecC
Q 003528 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (813)
Q Consensus 121 A~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~ 197 (813)
|+||+ ++||+||||++||+.. ...+++++.++.++.|.|||+||||++.+...+++++++.+ |+++..|+
T Consensus 156 AraL~~~P~llllDEPt~gLD~~~------~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~-G~i~~~g~ 228 (287)
T PRK13637 156 AGVVAMEPKILILDEPTAGLDPKG------RDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNK-GKCELQGT 228 (287)
T ss_pred HHHHHcCCCEEEEECCccCCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEECC
Confidence 99999 9999999999999999 99999999999765689999999999988766666666655 99999998
Q ss_pred cccccCC
Q 003528 198 KPQAHME 204 (813)
Q Consensus 198 ~~e~~~~ 204 (813)
+.+++..
T Consensus 229 ~~~~~~~ 235 (287)
T PRK13637 229 PREVFKE 235 (287)
T ss_pred HHHHHhC
Confidence 8776553
No 68
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=5.3e-26 Score=241.13 Aligned_cols=186 Identities=15% Similarity=0.160 Sum_probs=136.7
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----e-------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----T------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----~------- 77 (813)
||+++|++++|++ ..+|+++||++ .+|++++|+|+|||||||||++|+|+.+ |++|+.. .
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~ 72 (255)
T PRK11231 2 TLRTENLTVGYGT---KRILNDLSLSL--PTGKITALIGPNGCGKSTLLKCFARLLT----PQSGTVFLGDKPISMLSSR 72 (255)
T ss_pred EEEEEeEEEEECC---EEEEeeeeeEE--cCCcEEEEECCCCCCHHHHHHHHhCCcC----CCCcEEEECCEEhHHCCHH
Confidence 6999999999975 67999999999 5899999999999999999999999987 8889731 0
Q ss_pred ----ccceecccccCCCchhHHHHhhCCC-----------ccc---c-----------------ccchHHHHHHHHHHHH
Q 003528 78 ----TKGIWMARCAGIEPCTLIMDLEGTD-----------GRE---R-----------------GEDDTAFEKQSALFAL 122 (813)
Q Consensus 78 ----~~g~~~~~~~~~e~~~~vld~~g~~-----------~~e---~-----------------~~~~~~~erQrv~iA~ 122 (813)
..++.++.. ...+...+.++.... ... + ......+|+||++||+
T Consensus 73 ~~~~~i~~~~q~~-~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 151 (255)
T PRK11231 73 QLARRLALLPQHH-LTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAM 151 (255)
T ss_pred HHhhheEEecccC-CCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHH
Confidence 112222222 111222233332110 000 0 0001123999999999
Q ss_pred HHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcc
Q 003528 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (813)
Q Consensus 123 ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~ 199 (813)
|++ ++|||||||+|||+.. ...+.+.+.++.++ |+|+|++|||++.+...+++++++.+ |+++..|++.
T Consensus 152 al~~~p~llllDEP~~~LD~~~------~~~l~~~l~~l~~~-~~tiii~tH~~~~~~~~~d~i~~l~~-G~i~~~~~~~ 223 (255)
T PRK11231 152 VLAQDTPVVLLDEPTTYLDINH------QVELMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVLAN-GHVMAQGTPE 223 (255)
T ss_pred HHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHC-CCEEEEEECCHHHHHHhcCEEEEEEC-CeEEEEcCHH
Confidence 999 9999999999999999 99999999998764 89999999999988766666666655 9999888877
Q ss_pred cccCCccchhhhc
Q 003528 200 QAHMETPLSEFFN 212 (813)
Q Consensus 200 e~~~~~~l~d~f~ 212 (813)
+.+....+.++|.
T Consensus 224 ~~~~~~~~~~~~~ 236 (255)
T PRK11231 224 EVMTPGLLRTVFD 236 (255)
T ss_pred HhcCHHHHHHHhC
Confidence 6654444444443
No 69
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=5.4e-26 Score=240.68 Aligned_cols=179 Identities=12% Similarity=0.077 Sum_probs=133.3
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----e-------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----T------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----~------- 77 (813)
+|+++|+++.|++ ..+|+++||++ .+|++++|+||||||||||+++|+|+.+ |++|+.. .
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~ 75 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEV--REQEIVSLIGPNGAGKTTVFNCLTGFYK----PTGGTILLRGQHIEGLPGH 75 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEE--cCCeEEEEECCCCCCHHHHHHHHhCCcC----CCcceEEECCEECCCCCHH
Confidence 6999999999975 67999999999 5899999999999999999999999997 8899721 0
Q ss_pred ---ccce--ecccccCCCchhHHHHhhCCC--------------------cc--ccccc--------------------h
Q 003528 78 ---TKGI--WMARCAGIEPCTLIMDLEGTD--------------------GR--ERGED--------------------D 110 (813)
Q Consensus 78 ---~~g~--~~~~~~~~e~~~~vld~~g~~--------------------~~--e~~~~--------------------~ 110 (813)
..++ .++. ....+...+.++.... .. +.... .
T Consensus 76 ~~~~~~i~~~~q~-~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 154 (255)
T PRK11300 76 QIARMGVVRTFQH-VRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNL 154 (255)
T ss_pred HHHhcCeEEeccC-cccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhC
Confidence 0111 1222 1222222333322110 00 00000 0
Q ss_pred HHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeee
Q 003528 111 TAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE 187 (813)
Q Consensus 111 ~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~ 187 (813)
..+|+||++||+|++ ++|||||||+|||+.. ...+.+++.++.++.|+|||++||+++.+...+++++++.
T Consensus 155 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~------~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~ 228 (255)
T PRK11300 155 AYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKE------TKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVN 228 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHH------HHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 113999999999999 9999999999999999 9999999999976558999999999998876666666655
Q ss_pred cCCeEEEecCcccccCC
Q 003528 188 DIQKIWDSVPKPQAHME 204 (813)
Q Consensus 188 ~~GkI~~~g~~~e~~~~ 204 (813)
+ |+++..|++.+.+..
T Consensus 229 ~-g~i~~~~~~~~~~~~ 244 (255)
T PRK11300 229 Q-GTPLANGTPEEIRNN 244 (255)
T ss_pred C-CeEEecCCHHHHhhC
Confidence 5 999998887665443
No 70
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=9.5e-26 Score=237.39 Aligned_cols=179 Identities=11% Similarity=0.100 Sum_probs=133.3
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee---------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT--------- 77 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~--------- 77 (813)
|++|+++|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.-
T Consensus 1 ~~~l~~~~l~~~~~~---~~~l~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~i~~~~ 71 (241)
T PRK14250 1 MNEIEFKEVSYSSFG---KEILKDISVKF--EGGAIYTIVGPSGAGKSTLIKLINRLID----PTEGSILIDGVDIKTID 71 (241)
T ss_pred CceEEEEeEEEEeCC---eeeeeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEECCEEhhhcC
Confidence 346999999999965 57999999999 5899999999999999999999999987 88897310
Q ss_pred ------ccceecccccCCCchhHHHHhh---------------------CCCc---cccccchHHHHHHHHHHHHHHH--
Q 003528 78 ------TKGIWMARCAGIEPCTLIMDLE---------------------GTDG---RERGEDDTAFEKQSALFALAVS-- 125 (813)
Q Consensus 78 ------~~g~~~~~~~~~e~~~~vld~~---------------------g~~~---~e~~~~~~~~erQrv~iA~ALa-- 125 (813)
..++.++.. ...+ ..+.++. |+.. .........+|+||++||+|++
T Consensus 72 ~~~~~~~i~~~~q~~-~~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 72 VIDLRRKIGMVFQQP-HLFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred hHHhhhcEEEEecCc-hhch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 112222221 1111 1222222 2210 0011112234999999999999
Q ss_pred -hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccccC
Q 003528 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (813)
Q Consensus 126 -dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~~ 203 (813)
++|||||||++||+.. ...+.+.+.++.++.|.|||++|||++.+...+++++++. +|+++..+++.+++.
T Consensus 150 p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~-~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 150 PEVLLLDEPTSALDPTS------TEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLN-KGILVEYAKTYDFFT 221 (241)
T ss_pred CCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEe-CCEEEEeCCHHHHhc
Confidence 9999999999999999 9999999999876558999999999998776566555555 599999888776543
No 71
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.93 E-value=6.8e-26 Score=234.28 Aligned_cols=172 Identities=14% Similarity=0.075 Sum_probs=125.3
Q ss_pred cEEEEeeeEEecccc-ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----------
Q 003528 9 STQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~-~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---------- 77 (813)
||+++|++++|++.. ...+++++||++ .+|++++|+|+|||||||||++|+|+.+ |++|+..-
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~ 74 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTV--KPGEVTGLLGPNGAGKTTTLRMLAGLLE----PDAGFATVDGFDVVKEPA 74 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCcC----CCCceEEECCEEcccCHH
Confidence 489999999997510 017999999999 5899999999999999999999999997 88997310
Q ss_pred ----ccceecccccCCCchhHHHHhh-------CCCcccccc--------------------chHHHHHHHHHHHHHHH-
Q 003528 78 ----TKGIWMARCAGIEPCTLIMDLE-------GTDGRERGE--------------------DDTAFEKQSALFALAVS- 125 (813)
Q Consensus 78 ----~~g~~~~~~~~~e~~~~vld~~-------g~~~~e~~~--------------------~~~~~erQrv~iA~ALa- 125 (813)
..++.++.. ...+...+.++. +....+... ....+|+||++||+|++
T Consensus 75 ~~~~~i~~~~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 153 (218)
T cd03266 75 EARRRLGFVSDST-GLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVH 153 (218)
T ss_pred HHHhhEEEecCCc-ccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhc
Confidence 112222222 222222232222 111100000 01113999999999999
Q ss_pred --hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEe
Q 003528 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (813)
Q Consensus 126 --dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~ 195 (813)
++|||||||++||+.. ...+.+++.++.++ |.|+|+||||++.+...+++++++. +|+++..
T Consensus 154 ~p~illlDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tii~~tH~~~~~~~~~d~i~~l~-~G~i~~~ 217 (218)
T cd03266 154 DPPVLLLDEPTTGLDVMA------TRALREFIRQLRAL-GKCILFSTHIMQEVERLCDRVVVLH-RGRVVYE 217 (218)
T ss_pred CCCEEEEcCCCcCCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhcCEEEEEE-CCEEeec
Confidence 9999999999999999 99999999998754 8999999999988776666655554 4998764
No 72
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.9e-26 Score=246.23 Aligned_cols=183 Identities=14% Similarity=0.123 Sum_probs=136.2
Q ss_pred cEEEEeeeEEecccc--ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----------
Q 003528 9 STQLIDGDGTFNVSG--IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ---------- 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~--~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q---------- 76 (813)
.|+++|++++|++.. ...+|+++||++ .+|++++|+||||||||||+++|+|+.+ |++|++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~i~~~~ 75 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSI--PSGSYVAIIGHTGSGKSTLLQHLNGLLQ----PTSGTVTIGERVITAGK 75 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEE--cCCCEEEEECCCCCcHHHHHHHHhcCCC----CCCcEEEECCEECcccc
Confidence 489999999996411 146999999999 5899999999999999999999999997 8889731
Q ss_pred ---------eccceeccccc-CCCchhHHHHhh-------------------------CCCc---cccccchHHHHHHHH
Q 003528 77 ---------TTKGIWMARCA-GIEPCTLIMDLE-------------------------GTDG---RERGEDDTAFEKQSA 118 (813)
Q Consensus 77 ---------~~~g~~~~~~~-~~e~~~~vld~~-------------------------g~~~---~e~~~~~~~~erQrv 118 (813)
...|++++... ... ...+.+++ |+.. .........+|+||+
T Consensus 76 ~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv 154 (290)
T PRK13634 76 KNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRV 154 (290)
T ss_pred ccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHH
Confidence 01234444321 111 11222221 2210 001111223499999
Q ss_pred HHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEe
Q 003528 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (813)
Q Consensus 119 ~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~ 195 (813)
+||+||+ ++|||||||++||+.. ...+++++.++.++.|.|||++|||++.+...+++++++.+ |+|+..
T Consensus 155 ~lAraL~~~P~llllDEPt~~LD~~~------~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~-G~i~~~ 227 (290)
T PRK13634 155 AIAGVLAMEPEVLVLDEPTAGLDPKG------RKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHK-GTVFLQ 227 (290)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEE
Confidence 9999999 9999999999999999 99999999999776689999999999988766666666655 999999
Q ss_pred cCcccccCCc
Q 003528 196 VPKPQAHMET 205 (813)
Q Consensus 196 g~~~e~~~~~ 205 (813)
|++.+++...
T Consensus 228 g~~~~~~~~~ 237 (290)
T PRK13634 228 GTPREIFADP 237 (290)
T ss_pred CCHHHHhcCH
Confidence 9887766543
No 73
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=3.4e-27 Score=235.57 Aligned_cols=189 Identities=13% Similarity=0.134 Sum_probs=152.4
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ---------- 76 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q---------- 76 (813)
|..+.+.|+.|+|+. +.++++|||++ .+||+|+++|||||||||.+.++.|+.. |++|+..
T Consensus 2 ~~~L~a~~l~K~y~k---r~Vv~~Vsl~v--~~GEiVGLLGPNGAGKTT~Fymi~Glv~----~d~G~i~ld~~diT~lP 72 (243)
T COG1137 2 MSTLVAENLAKSYKK---RKVVNDVSLEV--NSGEIVGLLGPNGAGKTTTFYMIVGLVR----PDSGKILLDDEDITKLP 72 (243)
T ss_pred CcEEEehhhhHhhCC---eeeeeeeeEEE--cCCcEEEEECCCCCCceeEEEEEEEEEe----cCCceEEECCcccccCC
Confidence 446999999999987 89999999999 5899999999999999999999999998 9999931
Q ss_pred ------eccceeccc------ccCCCchhHHHHhhCCCcc--ccccch----HH----------------HHHHHHHHHH
Q 003528 77 ------TTKGIWMAR------CAGIEPCTLIMDLEGTDGR--ERGEDD----TA----------------FEKQSALFAL 122 (813)
Q Consensus 77 ------~~~g~~~~~------~~~~e~~~~vld~~g~~~~--e~~~~~----~~----------------~erQrv~iA~ 122 (813)
-..|+..|. .+..+|+..+++....+.. ++.... .+ +||+|+-|||
T Consensus 73 m~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIAR 152 (243)
T COG1137 73 MHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIAR 152 (243)
T ss_pred hHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHH
Confidence 111222222 2234567777776553332 222111 11 1999999999
Q ss_pred HHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcc
Q 003528 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (813)
Q Consensus 123 ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~ 199 (813)
||+ +++|||||++|+||.. ...|.+++..|... |..|+++-|+..++...+++.+++.+ |+|.++|++.
T Consensus 153 aLa~~P~fiLLDEPFAGVDPia------V~dIq~iI~~L~~r-giGvLITDHNVREtL~i~dRaYIi~~-G~vla~G~p~ 224 (243)
T COG1137 153 ALAANPKFILLDEPFAGVDPIA------VIDIQRIIKHLKDR-GIGVLITDHNVRETLDICDRAYIISD-GKVLAEGSPE 224 (243)
T ss_pred HHhcCCCEEEecCCccCCCchh------HHHHHHHHHHHHhC-CceEEEccccHHHHHhhhheEEEEec-CeEEecCCHH
Confidence 999 9999999999999999 99999999999875 99999999999888777777777776 9999999999
Q ss_pred cccCCccchhhhc
Q 003528 200 QAHMETPLSEFFN 212 (813)
Q Consensus 200 e~~~~~~l~d~f~ 212 (813)
++.++....++|-
T Consensus 225 ei~~n~~Vr~~YL 237 (243)
T COG1137 225 EIVNNEDVRRVYL 237 (243)
T ss_pred HHhcChhhhhhcc
Confidence 9998888777664
No 74
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.93 E-value=4.4e-26 Score=224.58 Aligned_cols=178 Identities=17% Similarity=0.160 Sum_probs=136.2
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------ 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------ 76 (813)
||.+.++.++|+. .+. ..++++ ..|++++|+||+|||||||||+|+|... |.+|++.
T Consensus 1 ~l~L~~V~~~y~~---~~~--~fdl~v--~~ge~vAi~GpSGaGKSTLLnLIAGF~~----P~~G~i~i~g~d~t~~~P~ 69 (231)
T COG3840 1 MLALDDVRFSYGH---LPM--RFDLTV--PAGEIVAILGPSGAGKSTLLNLIAGFET----PASGEILINGVDHTASPPA 69 (231)
T ss_pred CccccceEEeeCc---ceE--EEEEee--cCCcEEEEECCCCccHHHHHHHHHhccC----CCCceEEEcCeecCcCCcc
Confidence 4788999999976 222 345667 4799999999999999999999999998 9999831
Q ss_pred -eccceecccccCCCchhHHHHhhCCCcc----------ccccch-----------------HHHHHHHHHHHHHHH---
Q 003528 77 -TTKGIWMARCAGIEPCTLIMDLEGTDGR----------ERGEDD-----------------TAFEKQSALFALAVS--- 125 (813)
Q Consensus 77 -~~~g~~~~~~~~~e~~~~vld~~g~~~~----------e~~~~~-----------------~~~erQrv~iA~ALa--- 125 (813)
....+.|+.. .....+.|..++|+... ++.+.. ..+|||||++||++.
T Consensus 70 ~RPVSmlFQEn-NLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~ 148 (231)
T COG3840 70 ERPVSMLFQEN-NLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQ 148 (231)
T ss_pred cCChhhhhhcc-ccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccC
Confidence 2223444432 23445566677665421 010100 012999999999999
Q ss_pred hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccccCCc
Q 003528 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMET 205 (813)
Q Consensus 126 dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~~~~ 205 (813)
.|++||||+++|||.- +.+++.++.+++.+++.|++||||.++.+....++.+++. +|+|.+.|+..+.+...
T Consensus 149 PilLLDEPFsALdP~L------R~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~-~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 149 PILLLDEPFSALDPAL------RAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLD-NGRIAAQGSTQELLSGK 221 (231)
T ss_pred CeEEecCchhhcCHHH------HHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEe-CCEEEeeccHHHHhccC
Confidence 9999999999999998 9999999999999999999999999998887665555554 59999999988876543
No 75
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=7e-26 Score=234.80 Aligned_cols=176 Identities=18% Similarity=0.221 Sum_probs=127.7
Q ss_pred EEEEeeeEEecccc-ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----------c
Q 003528 10 TQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----------T 78 (813)
Q Consensus 10 Iel~dls~~y~~~~-~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----------~ 78 (813)
|+++|+++.|++.. ...+|+++||++ .+|++++|+||||||||||+++|+|+.+ |++|+..- .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i--~~G~~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~ 74 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSV--EEGEFVALVGPSGCGKSTLLRIIAGLER----PTSGEVLVDGEPVTGPGPD 74 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEE--eCCcEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCEECccccCc
Confidence 57899999996410 136999999999 5899999999999999999999999997 88897311 1
Q ss_pred cceecccccCCCchhHHHHhh-------CCCccc--------------------cccchHHHHHHHHHHHHHHH---hHh
Q 003528 79 KGIWMARCAGIEPCTLIMDLE-------GTDGRE--------------------RGEDDTAFEKQSALFALAVS---DIV 128 (813)
Q Consensus 79 ~g~~~~~~~~~e~~~~vld~~-------g~~~~e--------------------~~~~~~~~erQrv~iA~ALa---dvL 128 (813)
.+++.+.. ...+...+.++. +..... .......+||||++||+|++ +++
T Consensus 75 i~~v~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~ll 153 (220)
T cd03293 75 RGYVFQQD-ALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVL 153 (220)
T ss_pred EEEEeccc-ccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 12222221 111111222221 111000 00111223999999999999 999
Q ss_pred hhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeec-CCeEEEecCc
Q 003528 129 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED-IQKIWDSVPK 198 (813)
Q Consensus 129 LLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~-~GkI~~~g~~ 198 (813)
||||||++||+.. ...+++++.++.++.|.|||++|||++.+...+++++++.+ +|+|+..++.
T Consensus 154 lLDEPt~~LD~~~------~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 154 LLDEPFSALDALT------REQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred EECCCCCCCCHHH------HHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999 99999999998655589999999999887766766666663 5999887653
No 76
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.93 E-value=7.2e-26 Score=236.11 Aligned_cols=175 Identities=17% Similarity=0.132 Sum_probs=130.1
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee------------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------------ 77 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~------------ 77 (813)
|+++|+++.|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |.+|+..-
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~ 71 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEV--PKGEVTCVLGRNGVGKTTLLKTLMGLLP----VKSGSIRLDGEDITKLPPHE 71 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEE--CCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCCEEEECCEECCCCCHHH
Confidence 578999999976 67999999999 5899999999999999999999999998 88897310
Q ss_pred ----ccceecccccCCCchhHHHHhh-------CCCcccc------------------ccchHHHHHHHHHHHHHHH---
Q 003528 78 ----TKGIWMARCAGIEPCTLIMDLE-------GTDGRER------------------GEDDTAFEKQSALFALAVS--- 125 (813)
Q Consensus 78 ----~~g~~~~~~~~~e~~~~vld~~-------g~~~~e~------------------~~~~~~~erQrv~iA~ALa--- 125 (813)
..++.++. ....+...+.++. +....+. ......+|+||++||+|++
T Consensus 72 ~~~~~i~~~~q~-~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (230)
T TIGR03410 72 RARAGIAYVPQG-REIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRP 150 (230)
T ss_pred HHHhCeEEeccC-CcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 01222222 2222222222222 1100000 0001123999999999999
Q ss_pred hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccc
Q 003528 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (813)
Q Consensus 126 dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~ 201 (813)
+++|+||||++||+.. ...+.+++.++.++.|.|+|++|||++.+...+++++++.+ |+++..|++.++
T Consensus 151 ~illlDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~-g~i~~~~~~~~~ 219 (230)
T TIGR03410 151 KLLLLDEPTEGIQPSI------IKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMER-GRVVASGAGDEL 219 (230)
T ss_pred CEEEecCCcccCCHHH------HHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEECCHHHc
Confidence 9999999999999999 99999999998765589999999999988766666666555 999998877654
No 77
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.1e-25 Score=247.74 Aligned_cols=187 Identities=13% Similarity=0.143 Sum_probs=136.0
Q ss_pred ccEEEEeeeEEeccc-cccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----------
Q 003528 8 CSTQLIDGDGTFNVS-GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ---------- 76 (813)
Q Consensus 8 ~~Iel~dls~~y~~~-~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q---------- 76 (813)
++|+++|++++|... +...+++++||++ .+|++++|+|+||||||||+++|+|+.++...+++|++.
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i--~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~ 79 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTL--TEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLS 79 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEE--CCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCC
Confidence 479999999999521 1256999999999 589999999999999999999999998622224677621
Q ss_pred ---------eccceecccccC-CCchhHHHHh-------------------------------hCCCcc-----ccccch
Q 003528 77 ---------TTKGIWMARCAG-IEPCTLIMDL-------------------------------EGTDGR-----ERGEDD 110 (813)
Q Consensus 77 ---------~~~g~~~~~~~~-~e~~~~vld~-------------------------------~g~~~~-----e~~~~~ 110 (813)
...+++++.... ..+...+.++ .|+... ......
T Consensus 80 ~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~L 159 (330)
T PRK15093 80 PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYEL 159 (330)
T ss_pred HHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhC
Confidence 012344443221 1111111111 111110 000111
Q ss_pred HHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeee
Q 003528 111 TAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE 187 (813)
Q Consensus 111 ~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~ 187 (813)
..+|+|||+||+||+ ++||+||||++||+.. +..++++++++.++.|.|+||||||++.+...++++++|.
T Consensus 160 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~------~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~ 233 (330)
T PRK15093 160 TEGECQKVMIAIALANQPRLLIADEPTNAMEPTT------QAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLY 233 (330)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 224999999999999 9999999999999999 9999999999987669999999999999887676666665
Q ss_pred cCCeEEEecCcccccC
Q 003528 188 DIQKIWDSVPKPQAHM 203 (813)
Q Consensus 188 ~~GkI~~~g~~~e~~~ 203 (813)
+ |+|++.|+..+++.
T Consensus 234 ~-G~ive~g~~~~i~~ 248 (330)
T PRK15093 234 C-GQTVETAPSKELVT 248 (330)
T ss_pred C-CEEEEECCHHHHHh
Confidence 5 99999998777654
No 78
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1e-25 Score=236.31 Aligned_cols=176 Identities=17% Similarity=0.168 Sum_probs=130.1
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee------------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------------ 77 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~------------ 77 (813)
|+++|++++|+++ ..+|+++||++ .+|++++|+||||||||||+++|+|+.+ |++|+..-
T Consensus 1 l~~~~l~~~~~~~--~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~ 72 (241)
T cd03256 1 IEVENLSKTYPNG--KKALKDVSLSI--NPGEFVALIGPSGAGKSTLLRCLNGLVE----PTSGSVLIDGTDINKLKGKA 72 (241)
T ss_pred CEEeeEEEecCCc--cEEEecceEEE--cCCCEEEEECCCCCCHHHHHHHHhCCcC----CCCceEEECCEeccccCHhH
Confidence 4789999999642 46999999999 5899999999999999999999999997 88887310
Q ss_pred ------ccceecccccCCCchhHHHHhhCCC---------------ccccc--------------------cchHHHHHH
Q 003528 78 ------TKGIWMARCAGIEPCTLIMDLEGTD---------------GRERG--------------------EDDTAFEKQ 116 (813)
Q Consensus 78 ------~~g~~~~~~~~~e~~~~vld~~g~~---------------~~e~~--------------------~~~~~~erQ 116 (813)
..+++++. ....+...+.++.... ..... .....+|||
T Consensus 73 ~~~~~~~i~~~~q~-~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 151 (241)
T cd03256 73 LRQLRRQIGMIFQQ-FNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQ 151 (241)
T ss_pred HHHHHhccEEEccc-CcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHH
Confidence 01122222 1122222333332110 00000 001123999
Q ss_pred HHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEE
Q 003528 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (813)
Q Consensus 117 rv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~ 193 (813)
|++||+|++ ++|||||||++||+.. ...+.+.++++.++.|.|||++|||++.+...+++++++.+ |+++
T Consensus 152 rv~la~al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~-G~i~ 224 (241)
T cd03256 152 RVAIARALMQQPKLILADEPVASLDPAS------SRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKD-GRIV 224 (241)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEE
Confidence 999999999 9999999999999999 99999999998765589999999999988766666666655 9999
Q ss_pred EecCcccc
Q 003528 194 DSVPKPQA 201 (813)
Q Consensus 194 ~~g~~~e~ 201 (813)
..|++.+.
T Consensus 225 ~~~~~~~~ 232 (241)
T cd03256 225 FDGPPAEL 232 (241)
T ss_pred eecCHHHh
Confidence 88876654
No 79
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=8.1e-26 Score=243.26 Aligned_cols=184 Identities=14% Similarity=0.086 Sum_probs=133.9
Q ss_pred CccEEEEeeeEEecccc---ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee------
Q 003528 7 CCSTQLIDGDGTFNVSG---IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------ 77 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~---~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~------ 77 (813)
.+||+++|++++|++.. .+.+|+++||++ .+|++++|+|+||||||||+++|+|+.+ |++|++.-
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----~~~G~i~i~g~~i~ 75 (280)
T PRK13633 2 NEMIKCKNVSYKYESNEESTEKLALDDVNLEV--KKGEFLVILGRNGSGKSTIAKHMNALLI----PSEGKVYVDGLDTS 75 (280)
T ss_pred CceEEEeeeEEEcCCCCCCCCcceeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCEecc
Confidence 45799999999996411 146999999999 5899999999999999999999999998 88897310
Q ss_pred ----------ccceecccccCCCchhHHHHhh-------CCCcccccc--------------------chHHHHHHHHHH
Q 003528 78 ----------TKGIWMARCAGIEPCTLIMDLE-------GTDGRERGE--------------------DDTAFEKQSALF 120 (813)
Q Consensus 78 ----------~~g~~~~~~~~~e~~~~vld~~-------g~~~~e~~~--------------------~~~~~erQrv~i 120 (813)
..++.++..........+.++. +....+... ....+|+||++|
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~l 155 (280)
T PRK13633 76 DEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAI 155 (280)
T ss_pred ccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHH
Confidence 1122233211000001222222 111111000 111239999999
Q ss_pred HHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecC
Q 003528 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (813)
Q Consensus 121 A~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~ 197 (813)
|+|++ ++|||||||+|||+.. +..+.+++.++.++.|.|||+||||++.+.. +++++++ ++|+|+..|+
T Consensus 156 aral~~~p~llllDEPt~gLD~~~------~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l-~~G~i~~~g~ 227 (280)
T PRK13633 156 AGILAMRPECIIFDEPTAMLDPSG------RREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVM-DSGKVVMEGT 227 (280)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEE-ECCEEEEecC
Confidence 99999 9999999999999999 9999999999976568999999999998874 6555555 4599999998
Q ss_pred cccccCC
Q 003528 198 KPQAHME 204 (813)
Q Consensus 198 ~~e~~~~ 204 (813)
+.+++.+
T Consensus 228 ~~~~~~~ 234 (280)
T PRK13633 228 PKEIFKE 234 (280)
T ss_pred HHHHhcC
Confidence 8776544
No 80
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.93 E-value=9e-26 Score=241.47 Aligned_cols=179 Identities=14% Similarity=0.058 Sum_probs=133.3
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee---------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT--------- 77 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~--------- 77 (813)
+++|+++|+++.|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.-
T Consensus 5 ~~~l~~~~l~~~~~~---~~il~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~i~~~~ 75 (269)
T PRK11831 5 ANLVDMRGVSFTRGN---RCIFDNISLTV--PRGKITAIMGPSGIGKTTLLRLIGGQIA----PDHGEILFDGENIPAMS 75 (269)
T ss_pred cceEEEeCeEEEECC---EEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCEEccccC
Confidence 457999999999975 67999999999 5899999999999999999999999997 88887310
Q ss_pred ---------ccceecccccCCCchhHHHHhhCC--------Cccc--------------------cccchHHHHHHHHHH
Q 003528 78 ---------TKGIWMARCAGIEPCTLIMDLEGT--------DGRE--------------------RGEDDTAFEKQSALF 120 (813)
Q Consensus 78 ---------~~g~~~~~~~~~e~~~~vld~~g~--------~~~e--------------------~~~~~~~~erQrv~i 120 (813)
..++.++.. ...+...+.++... +... .......+||||++|
T Consensus 76 ~~~~~~~~~~i~~v~q~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~l 154 (269)
T PRK11831 76 RSRLYTVRKRMSMLFQSG-ALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAAL 154 (269)
T ss_pred hhhHHHHhhcEEEEeccc-ccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence 012222221 11122222232211 1000 000111239999999
Q ss_pred HHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecC
Q 003528 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (813)
Q Consensus 121 A~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~ 197 (813)
|+|++ ++|||||||++||+.. ...+.+++.++.++.|.|||+||||++.+...+++++++. +|+++..|+
T Consensus 155 aral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~-~G~i~~~g~ 227 (269)
T PRK11831 155 ARAIALEPDLIMFDEPFVGQDPIT------MGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVA-DKKIVAHGS 227 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEE-CCEEEEeCC
Confidence 99999 9999999999999999 9999999999876558999999999988876666655554 499999887
Q ss_pred ccccc
Q 003528 198 KPQAH 202 (813)
Q Consensus 198 ~~e~~ 202 (813)
+.+++
T Consensus 228 ~~~~~ 232 (269)
T PRK11831 228 AQALQ 232 (269)
T ss_pred HHHHh
Confidence 76554
No 81
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=6.5e-26 Score=244.44 Aligned_cols=181 Identities=13% Similarity=0.110 Sum_probs=135.3
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-----------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----------- 77 (813)
+|+++|+++.|.++ ..+|+++||++ .+|++++|+||||||||||+++|+|+.+ |++|+..-
T Consensus 5 ~l~~~~l~~~~~~~--~~~l~~vs~~i--~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~----p~~G~i~i~g~~~~~~~~~ 76 (283)
T PRK13636 5 ILKVEELNYNYSDG--THALKGININI--KKGEVTAILGGNGAGKSTLFQNLNGILK----PSSGRILFDGKPIDYSRKG 76 (283)
T ss_pred eEEEEeEEEEeCCC--CeeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCCC----CCccEEEECCEECCCCcch
Confidence 69999999999632 57999999999 5899999999999999999999999997 88897310
Q ss_pred ------ccceecccccCCCchhHHHHhhC-------CCcccc--------------------ccchHHHHHHHHHHHHHH
Q 003528 78 ------TKGIWMARCAGIEPCTLIMDLEG-------TDGRER--------------------GEDDTAFEKQSALFALAV 124 (813)
Q Consensus 78 ------~~g~~~~~~~~~e~~~~vld~~g-------~~~~e~--------------------~~~~~~~erQrv~iA~AL 124 (813)
..++.++..........+.++.. ....+. ......+|+||++||+||
T Consensus 77 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL 156 (283)
T PRK13636 77 LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVL 156 (283)
T ss_pred HHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 11233332211001123333321 111110 001112399999999999
Q ss_pred H---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccc
Q 003528 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (813)
Q Consensus 125 a---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~ 201 (813)
+ ++|||||||+|||+.. ...+.+++.++.++.|.|||++|||++.+...+++++++.+ |+++..|++.+.
T Consensus 157 ~~~p~lLilDEPt~gLD~~~------~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~-G~i~~~g~~~~~ 229 (283)
T PRK13636 157 VMEPKVLVLDEPTAGLDPMG------VSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKE-GRVILQGNPKEV 229 (283)
T ss_pred HcCCCEEEEeCCccCCCHHH------HHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEEC-CEEEEeCCHHHH
Confidence 9 9999999999999999 99999999999765589999999999988766666666655 999999988776
Q ss_pred cCC
Q 003528 202 HME 204 (813)
Q Consensus 202 ~~~ 204 (813)
+..
T Consensus 230 ~~~ 232 (283)
T PRK13636 230 FAE 232 (283)
T ss_pred hcC
Confidence 553
No 82
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.93 E-value=1.1e-25 Score=237.62 Aligned_cols=176 Identities=16% Similarity=0.191 Sum_probs=130.6
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-----------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----------- 77 (813)
+|+++|++++|++ ..+|+++||++ .+|++++|+||||||||||+++|+|+.+ |++|++.-
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~ 73 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEV--KPGEVVAIIGPSGSGKTTLLRCINLLEQ----PEAGTIRVGDITIDTARSL 73 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEE--cCCCEEEEECCCCCCHHHHHHHHhcCCC----CCCeEEEECCEEccccccc
Confidence 6999999999975 57999999999 5899999999999999999999999997 88887310
Q ss_pred ------------ccceecccccCCCchhHHHHhhC--------CCccc--------------------cccchHHHHHHH
Q 003528 78 ------------TKGIWMARCAGIEPCTLIMDLEG--------TDGRE--------------------RGEDDTAFEKQS 117 (813)
Q Consensus 78 ------------~~g~~~~~~~~~e~~~~vld~~g--------~~~~e--------------------~~~~~~~~erQr 117 (813)
..+++.+. ....+...+.++.. ..... .......+|+||
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qr 152 (250)
T PRK11264 74 SQQKGLIRQLRQHVGFVFQN-FNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQR 152 (250)
T ss_pred cchhhHHHHhhhhEEEEecC-cccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHH
Confidence 01122222 11111122222221 10000 001111239999
Q ss_pred HHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEE
Q 003528 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (813)
Q Consensus 118 v~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~ 194 (813)
++||+|++ ++|||||||++||+.. ...+.+.+.++.++ |.|+|++|||++.+...+++++++.+ |+++.
T Consensus 153 v~la~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tvi~~tH~~~~~~~~~d~i~~l~~-G~i~~ 224 (250)
T PRK11264 153 VAIARALAMRPEVILFDEPTSALDPEL------VGEVLNTIRQLAQE-KRTMVIVTHEMSFARDVADRAIFMDQ-GRIVE 224 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEEC-CEEEE
Confidence 99999999 9999999999999999 99999999998764 89999999999888765666655555 99999
Q ss_pred ecCccccc
Q 003528 195 SVPKPQAH 202 (813)
Q Consensus 195 ~g~~~e~~ 202 (813)
.|++.+++
T Consensus 225 ~~~~~~~~ 232 (250)
T PRK11264 225 QGPAKALF 232 (250)
T ss_pred eCCHHHHh
Confidence 88776654
No 83
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.93 E-value=8.1e-26 Score=236.48 Aligned_cols=175 Identities=14% Similarity=0.121 Sum_probs=129.5
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee------------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------------ 77 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~------------ 77 (813)
|+++|+++.|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~ 71 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSV--RPGEIHGLIGPNGAGKTTLFNLISGFLR----PTSGSVLFDGEDITGLPPHE 71 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEe--cCCcEEEEECCCCCCHHHHHHHHcCCCC----CCCceEEECCEECCCCCHHH
Confidence 468999999975 57999999999 5899999999999999999999999997 88897310
Q ss_pred ----ccceecccccCCCchhHHHHhhCCC-----------------ccccc--------------------cchHHHHHH
Q 003528 78 ----TKGIWMARCAGIEPCTLIMDLEGTD-----------------GRERG--------------------EDDTAFEKQ 116 (813)
Q Consensus 78 ----~~g~~~~~~~~~e~~~~vld~~g~~-----------------~~e~~--------------------~~~~~~erQ 116 (813)
..++.++.. ...+...+.++.... ..+.. .....+|+|
T Consensus 72 ~~~~~i~~v~q~~-~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 72 IARLGIGRTFQIP-RLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQR 150 (236)
T ss_pred HHhcCEEEEeccc-ccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHH
Confidence 011222221 111222222222100 00000 001123999
Q ss_pred HHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEE
Q 003528 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (813)
Q Consensus 117 rv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~ 193 (813)
|++||+|++ ++||+||||++||+.. ...+.+.+.++.+ .|.|||++|||++.+...+++++++.+ |+|+
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~-G~i~ 222 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEE------TEELAELIRELRE-RGITVLLVEHDMDVVMSLADRVTVLDQ-GRVI 222 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEeC-CEEE
Confidence 999999999 9999999999999999 9999999999876 489999999999988766666666555 9999
Q ss_pred EecCccccc
Q 003528 194 DSVPKPQAH 202 (813)
Q Consensus 194 ~~g~~~e~~ 202 (813)
..|++.++.
T Consensus 223 ~~~~~~~~~ 231 (236)
T cd03219 223 AEGTPDEVR 231 (236)
T ss_pred eecCHHHhc
Confidence 888776654
No 84
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.93 E-value=9.1e-26 Score=233.78 Aligned_cols=174 Identities=14% Similarity=0.136 Sum_probs=128.7
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee-------------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------- 76 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------- 76 (813)
|+++|++++|++ ..+++++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~ 71 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTV--PEGEIVALLGRNGAGKTTLLKTIMGLLP----PRSGSIRFDGRDITGLPPHE 71 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEE--cCCeEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCEEcCCCCHHH
Confidence 578999999975 57999999999 5899999999999999999999999998 8889721
Q ss_pred ---eccceecccccCCCchhHHHHhhCCC-----cccc---------------------ccchHHHHHHHHHHHHHHH--
Q 003528 77 ---TTKGIWMARCAGIEPCTLIMDLEGTD-----GRER---------------------GEDDTAFEKQSALFALAVS-- 125 (813)
Q Consensus 77 ---~~~g~~~~~~~~~e~~~~vld~~g~~-----~~e~---------------------~~~~~~~erQrv~iA~ALa-- 125 (813)
...++.++.. ...+...+.++.... ..+. ......+|+||++||+|++
T Consensus 72 ~~~~~i~~~~q~~-~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 150 (222)
T cd03224 72 RARAGIGYVPEGR-RIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSR 150 (222)
T ss_pred HHhcCeEEecccc-ccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcC
Confidence 0012222221 112222222222110 0000 0001123999999999999
Q ss_pred -hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccc
Q 003528 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (813)
Q Consensus 126 -dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~ 201 (813)
++||+||||++||+.. ...+.+++.++.+ .|.|+|++|||++.+...+++++++.+ |++...+++.++
T Consensus 151 p~llllDEPt~~LD~~~------~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~-G~i~~~~~~~~~ 219 (222)
T cd03224 151 PKLLLLDEPSEGLAPKI------VEEIFEAIRELRD-EGVTILLVEQNARFALEIADRAYVLER-GRVVLEGTAAEL 219 (222)
T ss_pred CCEEEECCCcccCCHHH------HHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhccEEEEeeC-CeEEEeCCHHHH
Confidence 9999999999999999 9999999999876 489999999999987766666666655 999988766543
No 85
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.93 E-value=9.9e-26 Score=239.77 Aligned_cols=178 Identities=16% Similarity=0.139 Sum_probs=132.8
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-----------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----------- 77 (813)
+|+++|+++.|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~~----p~~G~i~~~g~~~~~~~~~ 72 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTL--RPGEVVAILGPNGAGKSTLLRALSGELS----PDSGEVRLNGRPLADWSPA 72 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCCEEEECCEEcccCCHH
Confidence 5899999999976 67999999999 5899999999999999999999999987 88897310
Q ss_pred ----ccceecccccCCCchhHHHHhhCCCc-------cc---c-----------------ccchHHHHHHHHHHHHHHH-
Q 003528 78 ----TKGIWMARCAGIEPCTLIMDLEGTDG-------RE---R-----------------GEDDTAFEKQSALFALAVS- 125 (813)
Q Consensus 78 ----~~g~~~~~~~~~e~~~~vld~~g~~~-------~e---~-----------------~~~~~~~erQrv~iA~ALa- 125 (813)
..+++++.. .......+.++..... .. + ......+|+||++||+|++
T Consensus 73 ~~~~~i~~~~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~ 151 (258)
T PRK13548 73 ELARRRAVLPQHS-SLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQ 151 (258)
T ss_pred HhhhheEEEccCC-cCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 112222221 1112223344331110 00 0 0001113999999999998
Q ss_pred --------hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecC
Q 003528 126 --------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (813)
Q Consensus 126 --------dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~ 197 (813)
++|||||||++||+.. ...+.+.+.++.++.|.|||++|||++.+...+++++++.+ |+++..|+
T Consensus 152 ~~~~~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~-G~i~~~~~ 224 (258)
T PRK13548 152 LWEPDGPPRWLLLDEPTSALDLAH------QHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQ-GRLVADGT 224 (258)
T ss_pred ccccCCCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEEC-CEEEeeCC
Confidence 7999999999999999 99999999998734589999999999988766666666655 99998887
Q ss_pred cccccC
Q 003528 198 KPQAHM 203 (813)
Q Consensus 198 ~~e~~~ 203 (813)
+.++..
T Consensus 225 ~~~~~~ 230 (258)
T PRK13548 225 PAEVLT 230 (258)
T ss_pred HHHHhC
Confidence 766544
No 86
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.2e-25 Score=231.28 Aligned_cols=168 Identities=14% Similarity=0.171 Sum_probs=124.2
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee-----------ec
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ-----------TT 78 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q-----------~~ 78 (813)
|+++|+++.|++ ..+++++||++ .+|++++|+|||||||||||++|+|+.+ |++|+.. ..
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i--~~G~~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~ 71 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSV--EKGEIFGLLGPNGAGKTTTIRMILGIIL----PDSGEVLFDGKPLDIAARNR 71 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCCchhHHHHcc
Confidence 578999999975 67999999999 5899999999999999999999999997 8899832 11
Q ss_pred cceecccccCCCchhHHHHhh-------CCCcccc--------------------ccchHHHHHHHHHHHHHHH---hHh
Q 003528 79 KGIWMARCAGIEPCTLIMDLE-------GTDGRER--------------------GEDDTAFEKQSALFALAVS---DIV 128 (813)
Q Consensus 79 ~g~~~~~~~~~e~~~~vld~~-------g~~~~e~--------------------~~~~~~~erQrv~iA~ALa---dvL 128 (813)
.+++++.. ...+...+.++. +....+. ......+||||++||+|++ +++
T Consensus 72 i~~~~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~l 150 (210)
T cd03269 72 IGYLPEER-GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELL 150 (210)
T ss_pred EEEeccCC-cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 22233322 111111222221 1111100 0011123999999999999 999
Q ss_pred hhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEe
Q 003528 129 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (813)
Q Consensus 129 LLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~ 195 (813)
|+||||++||+.. ...+.+.+.++.++ |.|+|++|||++.+...+++++++.+ |+++..
T Consensus 151 llDEP~~~LD~~~------~~~~~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~-g~i~~~ 209 (210)
T cd03269 151 ILDEPFSGLDPVN------VELLKDVIRELARA-GKTVILSTHQMELVEELCDRVLLLNK-GRAVLY 209 (210)
T ss_pred EEeCCCcCCCHHH------HHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhhhEEEEEeC-CEEEec
Confidence 9999999999999 99999999998764 88999999999887765665555554 998764
No 87
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.93 E-value=8.5e-26 Score=237.36 Aligned_cols=176 Identities=13% Similarity=0.087 Sum_probs=130.8
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-----------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----------- 77 (813)
+|++.|+++.|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 2 ~i~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~~----p~~G~i~~~g~~~~~~~~~ 72 (242)
T TIGR03411 2 ILYLEGLSVSFDG---FKALNDLSLYV--DPGELRVIIGPNGAGKTTMMDVITGKTR----PDEGSVLFGGTDLTGLPEH 72 (242)
T ss_pred eEEEEeeEEEcCC---eEEeeeeeEEE--cCCcEEEEECCCCCCHHHHHHHHhCCCC----CCCCeEEECCeecCCCCHH
Confidence 6899999999975 57999999999 5899999999999999999999999987 88897210
Q ss_pred -----ccceecccccCCCchhHHHHhhCCC---------------ccc---c-----------------ccchHHHHHHH
Q 003528 78 -----TKGIWMARCAGIEPCTLIMDLEGTD---------------GRE---R-----------------GEDDTAFEKQS 117 (813)
Q Consensus 78 -----~~g~~~~~~~~~e~~~~vld~~g~~---------------~~e---~-----------------~~~~~~~erQr 117 (813)
..++.++. ....+...+.++.... ... + ......+|+||
T Consensus 73 ~~~~~~i~~~~q~-~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qr 151 (242)
T TIGR03411 73 QIARAGIGRKFQK-PTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQW 151 (242)
T ss_pred HHHhcCeeEeccc-cccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence 01122221 1111122222222100 000 0 00111239999
Q ss_pred HHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEE
Q 003528 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (813)
Q Consensus 118 v~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~ 194 (813)
++||+|++ ++|||||||++||+.. ...+.+++.++.+ +.|||++||+++.+...+++++++.+ |+++.
T Consensus 152 v~laral~~~p~~lllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~-g~~~~ 222 (242)
T TIGR03411 152 LEIGMLLMQDPKLLLLDEPVAGMTDEE------TEKTAELLKSLAG--KHSVVVVEHDMEFVRSIADKVTVLHQ-GSVLA 222 (242)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCHHH------HHHHHHHHHHHhc--CCEEEEEECCHHHHHHhCCEEEEEEC-CeEEe
Confidence 99999999 9999999999999999 9999999999864 68999999999988766766666655 99998
Q ss_pred ecCcccccC
Q 003528 195 SVPKPQAHM 203 (813)
Q Consensus 195 ~g~~~e~~~ 203 (813)
.|++.++..
T Consensus 223 ~~~~~~~~~ 231 (242)
T TIGR03411 223 EGSLDQVQA 231 (242)
T ss_pred eCCHHHHhc
Confidence 888766543
No 88
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.93 E-value=1e-25 Score=241.02 Aligned_cols=186 Identities=15% Similarity=0.170 Sum_probs=139.6
Q ss_pred EEEEeeeEEeccc-cccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCCeee-----------
Q 003528 10 TQLIDGDGTFNVS-GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNF-REMDAFKGRSQ----------- 76 (813)
Q Consensus 10 Iel~dls~~y~~~-~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~-~~m~p~sG~~q----------- 76 (813)
++++|++..|... +...+++||||++ .+|+++||+|.||||||||.+.|+|+++ +.....+|+..
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i--~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~ 79 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFEL--KKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEE--cCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCH
Confidence 7899999999652 1357999999999 5899999999999999999999999996 21223445511
Q ss_pred --------eccceecccccC-CCchhHHHHh---------------------------hCCCcccccc-----chHHHHH
Q 003528 77 --------TTKGIWMARCAG-IEPCTLIMDL---------------------------EGTDGRERGE-----DDTAFEK 115 (813)
Q Consensus 77 --------~~~g~~~~~~~~-~e~~~~vld~---------------------------~g~~~~e~~~-----~~~~~er 115 (813)
...++++|.... +.+...+-+. +|++..++.- ....+||
T Consensus 80 ~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMr 159 (316)
T COG0444 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMR 159 (316)
T ss_pred HHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHH
Confidence 112344554322 3333333221 1111111000 0011299
Q ss_pred HHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeE
Q 003528 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (813)
Q Consensus 116 Qrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI 192 (813)
|||+||+||+ ++||.||||++||... +.+|+++++++.++.|+++||||||++.+...++++.+|.. |+|
T Consensus 160 QRV~IAmala~~P~LlIADEPTTALDvt~------QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYa-G~i 232 (316)
T COG0444 160 QRVMIAMALALNPKLLIADEPTTALDVTV------QAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYA-GRI 232 (316)
T ss_pred HHHHHHHHHhCCCCEEEeCCCcchhhHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEEC-cEE
Confidence 9999999999 9999999999999999 99999999999988899999999999999888887777776 999
Q ss_pred EEecCcccccCC
Q 003528 193 WDSVPKPQAHME 204 (813)
Q Consensus 193 ~~~g~~~e~~~~ 204 (813)
++.|+..+++.+
T Consensus 233 VE~g~~~~i~~~ 244 (316)
T COG0444 233 VEEGPVEEIFKN 244 (316)
T ss_pred EEeCCHHHHhcC
Confidence 999999887754
No 89
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.8e-25 Score=238.54 Aligned_cols=187 Identities=16% Similarity=0.101 Sum_probs=137.2
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---------- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---------- 77 (813)
.+|+++|+++.|++ +.+|+++||++ .+|++++|+||||||||||+++|+|+.+ |++|++.-
T Consensus 10 ~~l~i~~l~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~ 80 (265)
T PRK10575 10 TTFALRNVSFRVPG---RTLLHPLSLTF--PAGKVTGLIGHNGSGKSTLLKMLGRHQP----PSEGEILLDAQPLESWSS 80 (265)
T ss_pred ceEEEeeEEEEECC---EEEEeeeeeEE--cCCCEEEEECCCCCCHHHHHHHHcCCCC----CCCCEEEECCEehhhCCH
Confidence 47999999999975 67999999999 5899999999999999999999999997 88897310
Q ss_pred -----ccceecccccCCCchhHHHHhhCCCc-----------cc---cc-----------------cchHHHHHHHHHHH
Q 003528 78 -----TKGIWMARCAGIEPCTLIMDLEGTDG-----------RE---RG-----------------EDDTAFEKQSALFA 121 (813)
Q Consensus 78 -----~~g~~~~~~~~~e~~~~vld~~g~~~-----------~e---~~-----------------~~~~~~erQrv~iA 121 (813)
..+++++.. ...+...+.++..... .. +. .....+|+||++||
T Consensus 81 ~~~~~~i~~v~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 159 (265)
T PRK10575 81 KAFARKVAYLPQQL-PAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIA 159 (265)
T ss_pred HHHhhheEEeccCC-CCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHH
Confidence 112222221 1112223333321100 00 00 00111399999999
Q ss_pred HHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCc
Q 003528 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (813)
Q Consensus 122 ~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~ 198 (813)
+|++ ++|||||||++||+.. ...+.+++.++.++.|.|||++|||++.+...+++++++.+ |+|+..|++
T Consensus 160 ral~~~p~lllLDEPt~~LD~~~------~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~-G~i~~~~~~ 232 (265)
T PRK10575 160 MLVAQDSRCLLLDEPTSALDIAH------QVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRG-GEMIAQGTP 232 (265)
T ss_pred HHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CeEEEecCH
Confidence 9999 9999999999999999 99999999998765589999999999988766666666655 999998887
Q ss_pred ccccCCccchhhh
Q 003528 199 PQAHMETPLSEFF 211 (813)
Q Consensus 199 ~e~~~~~~l~d~f 211 (813)
.++.....+..+|
T Consensus 233 ~~~~~~~~~~~~~ 245 (265)
T PRK10575 233 AELMRGETLEQIY 245 (265)
T ss_pred HHhcCHHHHHHHh
Confidence 7655433333444
No 90
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=9.9e-26 Score=253.24 Aligned_cols=183 Identities=16% Similarity=0.150 Sum_probs=134.8
Q ss_pred ccEEEEeeeEEecccc---------------------ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 003528 8 CSTQLIDGDGTFNVSG---------------------IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFR 66 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~---------------------~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~ 66 (813)
.+|+++|++|.|++.. ...+|+++||++ .+|++++|+|||||||||||++|+|+..
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i--~~Gei~~LvG~NGsGKSTLLr~I~Gl~~- 79 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAI--EEGEIFVIMGLSGSGKSTMVRLLNRLIE- 79 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEE--cCCCEEEEECCCCchHHHHHHHHHcCCC-
Confidence 4799999999998621 012799999999 5899999999999999999999999998
Q ss_pred CCCCCCCeee-------------------eccceecccccC------CCchhHHHHhhCCCcccc---------------
Q 003528 67 EMDAFKGRSQ-------------------TTKGIWMARCAG------IEPCTLIMDLEGTDGRER--------------- 106 (813)
Q Consensus 67 ~m~p~sG~~q-------------------~~~g~~~~~~~~------~e~~~~vld~~g~~~~e~--------------- 106 (813)
|++|++. ...++.++.... .+++.+.....+....+.
T Consensus 80 ---p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~ 156 (400)
T PRK10070 80 ---PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLEN 156 (400)
T ss_pred ---CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh
Confidence 8999731 012333333211 122222222212211110
Q ss_pred -----ccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCccc
Q 003528 107 -----GEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL 178 (813)
Q Consensus 107 -----~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~ 178 (813)
......+|+||++||+||+ ++|||||||++||+.. +..+.+.+.++.++.|+||||||||++++..
T Consensus 157 ~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~------r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~ 230 (400)
T PRK10070 157 YAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLI------RTEMQDELVKLQAKHQRTIVFISHDLDEAMR 230 (400)
T ss_pred hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHH------HHHHHHHHHHHHHHCCCeEEEEECCHHHHHH
Confidence 0111223999999999999 9999999999999999 9999999999976568999999999998876
Q ss_pred ccCcceeeecCCeEEEecCcccccC
Q 003528 179 ENLEPVLREDIQKIWDSVPKPQAHM 203 (813)
Q Consensus 179 ~~~~~vll~~~GkI~~~g~~~e~~~ 203 (813)
.+++++++.+ |+|+..|++.+++.
T Consensus 231 ~~Dri~vL~~-G~i~~~g~~~~l~~ 254 (400)
T PRK10070 231 IGDRIAIMQN-GEVVQVGTPDEILN 254 (400)
T ss_pred hCCEEEEEEC-CEEEecCCHHHHHh
Confidence 6666666655 99999988776553
No 91
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.93 E-value=1.5e-25 Score=235.25 Aligned_cols=177 Identities=17% Similarity=0.150 Sum_probs=131.4
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----e-------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----T------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----~------- 77 (813)
||+++|++++|++ ..+++++||++ .+|++++|+||||||||||+++|+|+.+ |++|+.. .
T Consensus 1 ~l~~~~l~~~~~~---~~il~~~s~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~ 71 (240)
T PRK09493 1 MIEFKNVSKHFGP---TQVLHNIDLNI--DQGEVVVIIGPSGSGKSTLLRCINKLEE----ITSGDLIVDGLKVNDPKVD 71 (240)
T ss_pred CEEEEeEEEEECC---eEEeeeeeEEE--cCCcEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCEECCcCChh
Confidence 4899999999975 67999999999 5899999999999999999999999997 8889731 0
Q ss_pred ------ccceecccccCCCchhHHHHhhCC--------Cccccc--------------------cchHHHHHHHHHHHHH
Q 003528 78 ------TKGIWMARCAGIEPCTLIMDLEGT--------DGRERG--------------------EDDTAFEKQSALFALA 123 (813)
Q Consensus 78 ------~~g~~~~~~~~~e~~~~vld~~g~--------~~~e~~--------------------~~~~~~erQrv~iA~A 123 (813)
..+++.+.. ...+...+.++... ...+.. .....+|+||++||+|
T Consensus 72 ~~~~~~~i~~~~q~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~a 150 (240)
T PRK09493 72 ERLIRQEAGMVFQQF-YLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARA 150 (240)
T ss_pred HHHHhhceEEEeccc-ccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHH
Confidence 012222221 11111222222211 000000 0011239999999999
Q ss_pred HH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccc
Q 003528 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (813)
Q Consensus 124 La---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e 200 (813)
++ +++||||||++||+.. ...+.+++.++.++ |.|+|++|||++.+...+++++++.+ |+++..|++.+
T Consensus 151 l~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~-G~i~~~g~~~~ 222 (240)
T PRK09493 151 LAVKPKLMLFDEPTSALDPEL------RHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDK-GRIAEDGDPQV 222 (240)
T ss_pred HhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEeeCCHHH
Confidence 99 9999999999999999 99999999998754 89999999999988766666666555 99999887766
Q ss_pred ccC
Q 003528 201 AHM 203 (813)
Q Consensus 201 ~~~ 203 (813)
...
T Consensus 223 ~~~ 225 (240)
T PRK09493 223 LIK 225 (240)
T ss_pred Hhc
Confidence 543
No 92
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.93 E-value=1.6e-25 Score=238.35 Aligned_cols=177 Identities=18% Similarity=0.157 Sum_probs=130.9
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCC---CCeee----e--
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF---KGRSQ----T-- 77 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~---sG~~q----~-- 77 (813)
.++|+++|+++.|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.. |+ +|++. .
T Consensus 2 ~~~l~~~nl~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~~----p~~~~~G~i~~~g~~~~ 72 (262)
T PRK09984 2 QTIIRVEKLAKTFNQ---HQALHAVDLNI--HHGEMVALLGPSGSGKSTLLRHLSGLIT----GDKSAGSHIELLGRTVQ 72 (262)
T ss_pred CcEEEEeeEEEEeCC---eEEEecceEEE--cCCcEEEEECCCCCCHHHHHHHHhccCC----CCCCCceEEEECCEecc
Confidence 357999999999975 67999999999 5899999999999999999999999986 54 36521 0
Q ss_pred --------------ccceecccccCCCchhHHHHhhCCC---------------ccccccc-------------------
Q 003528 78 --------------TKGIWMARCAGIEPCTLIMDLEGTD---------------GRERGED------------------- 109 (813)
Q Consensus 78 --------------~~g~~~~~~~~~e~~~~vld~~g~~---------------~~e~~~~------------------- 109 (813)
..++.++. ....+...+.++.... ..+....
T Consensus 73 ~~~~~~~~~~~~~~~i~~~~q~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 151 (262)
T PRK09984 73 REGRLARDIRKSRANTGYIFQQ-FNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVS 151 (262)
T ss_pred cccccchhHHHHHhheEEEccc-cccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcc
Confidence 01222222 1222222333332110 0000000
Q ss_pred -hHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCccee
Q 003528 110 -DTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVL 185 (813)
Q Consensus 110 -~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vl 185 (813)
...+|+||++||+|++ ++|||||||++||+.. .+.+.+.+.++.++.|+|||++|||++.+...++++++
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~ 225 (262)
T PRK09984 152 TLSGGQQQRVAIARALMQQAKVILADEPIASLDPES------ARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVA 225 (262)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 1113999999999999 9999999999999999 99999999999765589999999999987766666555
Q ss_pred eecCCeEEEecCccc
Q 003528 186 REDIQKIWDSVPKPQ 200 (813)
Q Consensus 186 l~~~GkI~~~g~~~e 200 (813)
+.+ |++...|++.+
T Consensus 226 l~~-g~i~~~g~~~~ 239 (262)
T PRK09984 226 LRQ-GHVFYDGSSQQ 239 (262)
T ss_pred EEC-CEEEEeCCHHH
Confidence 554 99999888765
No 93
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.3e-25 Score=241.76 Aligned_cols=182 Identities=15% Similarity=0.109 Sum_probs=133.6
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee-----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----------- 76 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----------- 76 (813)
++|+++|+++.|+.. .+.+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.
T Consensus 4 ~~l~~~~l~~~~~~~-~~~~l~~vsl~i--~~Ge~~~i~G~nGaGKSTLl~~i~G~~~----p~~G~i~~~g~~i~~~~~ 76 (279)
T PRK13635 4 EIIRVEHISFRYPDA-ATYALKDVSFSV--YEGEWVAIVGHNGSGKSTLAKLLNGLLL----PEAGTITVGGMVLSEETV 76 (279)
T ss_pred ceEEEEEEEEEeCCC-CccceeeeEEEE--cCCCEEEEECCCCCcHHHHHHHHhcCCC----CCCcEEEECCEECCcCcH
Confidence 369999999999641 256999999999 5899999999999999999999999998 8999731
Q ss_pred ----eccceecccccCCCchhHHHHhhCC-------Ccccc--------------------ccchHHHHHHHHHHHHHHH
Q 003528 77 ----TTKGIWMARCAGIEPCTLIMDLEGT-------DGRER--------------------GEDDTAFEKQSALFALAVS 125 (813)
Q Consensus 77 ----~~~g~~~~~~~~~e~~~~vld~~g~-------~~~e~--------------------~~~~~~~erQrv~iA~ALa 125 (813)
...++.++..........+.+++.. ...+. ......+|+||++||+||+
T Consensus 77 ~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~ 156 (279)
T PRK13635 77 WDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLA 156 (279)
T ss_pred HHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 0122333322111111223333211 11000 0011123999999999999
Q ss_pred ---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccccc
Q 003528 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (813)
Q Consensus 126 ---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~ 202 (813)
++|||||||+|||+.. ...+++++.++.++.|+|||++|||++.+. .+++++++ ++|+++..|++.++.
T Consensus 157 ~~p~lllLDEPt~gLD~~~------~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l-~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 157 LQPDIIILDEATSMLDPRG------RREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVM-NKGEILEEGTPEEIF 228 (279)
T ss_pred cCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEE-ECCEEEEECCHHHHh
Confidence 9999999999999999 999999999998766899999999998876 35555555 459999998876655
Q ss_pred CC
Q 003528 203 ME 204 (813)
Q Consensus 203 ~~ 204 (813)
..
T Consensus 229 ~~ 230 (279)
T PRK13635 229 KS 230 (279)
T ss_pred cC
Confidence 43
No 94
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=4e-26 Score=233.86 Aligned_cols=178 Identities=11% Similarity=0.133 Sum_probs=141.4
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---------- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---------- 77 (813)
|++++.+++|+|++ +.+++|+||++ .+|++.+++|+|||||||.+++|.|++. |++|++.-
T Consensus 1 ~~L~ie~vtK~Fg~---k~av~~isf~v--~~G~i~GllG~NGAGKTTtfRmILglle----~~~G~I~~~g~~~~~~~~ 71 (300)
T COG4152 1 MALEIEGVTKSFGD---KKAVDNISFEV--PPGEIFGLLGPNGAGKTTTFRMILGLLE----PTEGEITWNGGPLSQEIK 71 (300)
T ss_pred CceEEecchhccCc---eeeecceeeee--cCCeEEEeecCCCCCccchHHHHhccCC----ccCceEEEcCcchhhhhh
Confidence 36999999999987 89999999999 5899999999999999999999999998 99998311
Q ss_pred ccceecccccCCC-------chhHHHHhhCCCccccccch--------------------HHHHHHHHHHHHHHH---hH
Q 003528 78 TKGIWMARCAGIE-------PCTLIMDLEGTDGRERGEDD--------------------TAFEKQSALFALAVS---DI 127 (813)
Q Consensus 78 ~~g~~~~~~~~~e-------~~~~vld~~g~~~~e~~~~~--------------------~~~erQrv~iA~ALa---dv 127 (813)
.+-.|++.-.+.. .+.+...+-|++..+..... ..+++|++.|-.+++ ++
T Consensus 72 ~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeL 151 (300)
T COG4152 72 NRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPEL 151 (300)
T ss_pred hhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCE
Confidence 1112333333333 33344444466544332222 223899999999999 99
Q ss_pred hhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccccc
Q 003528 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (813)
Q Consensus 128 LLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~ 202 (813)
+|||||++||||.+ .+.+.+.+.+++.+ |.||||+||.|+.+...|++.+++.+ |+.+.+|+..++.
T Consensus 152 lILDEPFSGLDPVN------~elLk~~I~~lk~~-GatIifSsH~Me~vEeLCD~llmL~k-G~~V~~G~v~~ir 218 (300)
T COG4152 152 LILDEPFSGLDPVN------VELLKDAIFELKEE-GATIIFSSHRMEHVEELCDRLLMLKK-GQTVLYGTVEDIR 218 (300)
T ss_pred EEecCCccCCChhh------HHHHHHHHHHHHhc-CCEEEEecchHHHHHHHhhhhheecC-CceEEeccHHHHH
Confidence 99999999999999 99999999999875 99999999999999887777666655 9999999887654
No 95
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.4e-25 Score=239.44 Aligned_cols=179 Identities=15% Similarity=0.100 Sum_probs=134.0
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---------- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---------- 77 (813)
.+|++.|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~~----~~~G~i~~~g~~~~~~~~ 76 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEI--PDGHFTAIIGPNGCGKSTLLRTLSRLMT----PAHGHVWLDGEHIQHYAS 76 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEE--CCCCEEEEECCCCCCHHHHHHHHcCCCC----CCCcEEEECCEEhhhCCH
Confidence 47999999999976 67999999999 5899999999999999999999999997 88897320
Q ss_pred -----ccceecccccCCCchhHHHHhhCCC-----------ccc---c-----------------ccchHHHHHHHHHHH
Q 003528 78 -----TKGIWMARCAGIEPCTLIMDLEGTD-----------GRE---R-----------------GEDDTAFEKQSALFA 121 (813)
Q Consensus 78 -----~~g~~~~~~~~~e~~~~vld~~g~~-----------~~e---~-----------------~~~~~~~erQrv~iA 121 (813)
..++.++.. .......+.++.... ... + ......+|+||++||
T Consensus 77 ~~~~~~i~~v~q~~-~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~la 155 (265)
T PRK10253 77 KEVARRIGLLAQNA-TTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIA 155 (265)
T ss_pred HHHhhheEEeeccC-cCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHH
Confidence 112222221 111112233332110 000 0 000111399999999
Q ss_pred HHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCc
Q 003528 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (813)
Q Consensus 122 ~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~ 198 (813)
+|++ ++||+||||++||+.. ...+.+.+.++.++.|.|||++|||++.+...+++++++.+ |+++..|++
T Consensus 156 ral~~~p~llllDEPt~gLD~~~------~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~-G~i~~~g~~ 228 (265)
T PRK10253 156 MVLAQETAIMLLDEPTTWLDISH------QIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALRE-GKIVAQGAP 228 (265)
T ss_pred HHHhcCCCEEEEeCccccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999 9999999999999999 99999999999765589999999999988766666666655 999999887
Q ss_pred ccccC
Q 003528 199 PQAHM 203 (813)
Q Consensus 199 ~e~~~ 203 (813)
.++..
T Consensus 229 ~~~~~ 233 (265)
T PRK10253 229 KEIVT 233 (265)
T ss_pred HHHhh
Confidence 66543
No 96
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.93 E-value=1.6e-25 Score=230.11 Aligned_cols=169 Identities=14% Similarity=0.139 Sum_probs=125.2
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee------------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------------ 77 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~------------ 77 (813)
|+++|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i--~~G~~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~ 71 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHV--KKGEIYGFLGPNGAGKTTTMKIILGLIK----PDSGEITFDGKSYQKNIEAL 71 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCcC----CCceEEEECCCcccchHHHH
Confidence 578999999965 67999999999 5899999999999999999999999997 88997311
Q ss_pred -ccceecccccCCCchhHHHHhhCCC------cccccc-----------------chHHHHHHHHHHHHHHH---hHhhh
Q 003528 78 -TKGIWMARCAGIEPCTLIMDLEGTD------GRERGE-----------------DDTAFEKQSALFALAVS---DIVLI 130 (813)
Q Consensus 78 -~~g~~~~~~~~~e~~~~vld~~g~~------~~e~~~-----------------~~~~~erQrv~iA~ALa---dvLLL 130 (813)
..++.++.. ...+...+.++.... ..++.. ....+||||++||+|++ +++||
T Consensus 72 ~~i~~~~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 150 (208)
T cd03268 72 RRIGALIEAP-GFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLIL 150 (208)
T ss_pred hhEEEecCCC-ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 112222221 112222233322110 000000 01123999999999999 99999
Q ss_pred ccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEec
Q 003528 131 NMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (813)
Q Consensus 131 DEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g 196 (813)
||||++||+.. ...+.+++.++.+ .|.|+|++|||++.+...+++++++.+ |+++..|
T Consensus 151 DEPt~~LD~~~------~~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 151 DEPTNGLDPDG------IKELRELILSLRD-QGITVLISSHLLSEIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred CCCcccCCHHH------HHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999 9999999999876 489999999999988766666666655 9987653
No 97
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.8e-25 Score=232.43 Aligned_cols=175 Identities=17% Similarity=0.132 Sum_probs=127.2
Q ss_pred ccEEEEeeeEEecccc-ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----------
Q 003528 8 CSTQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ---------- 76 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~-~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q---------- 76 (813)
++|+++|+++.|++.. ...+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~~g~~i~~~~ 77 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSI--GEGEMMAIVGSSGSGKSTLLHLLGGLDT----PTSGDVIFNGQPMSKLS 77 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEE--cCCcEEEEECCCCCCHHHHHHHHhcCCC----CCceEEEECCEEcCcCC
Confidence 3699999999996421 136999999999 5899999999999999999999999997 8889721
Q ss_pred ---------eccceecccccCCCchhHHHHhh-------CCCccccc--------------------cchHHHHHHHHHH
Q 003528 77 ---------TTKGIWMARCAGIEPCTLIMDLE-------GTDGRERG--------------------EDDTAFEKQSALF 120 (813)
Q Consensus 77 ---------~~~g~~~~~~~~~e~~~~vld~~-------g~~~~e~~--------------------~~~~~~erQrv~i 120 (813)
...++.++.. ...+...+.++. +....+.. .....+||||++|
T Consensus 78 ~~~~~~~~~~~i~~v~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~l 156 (233)
T PRK11629 78 SAAKAELRNQKLGFIYQFH-HLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAI 156 (233)
T ss_pred HHHHHHHHhccEEEEecCc-ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHH
Confidence 0112223321 111112222222 11111100 0111239999999
Q ss_pred HHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecC
Q 003528 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (813)
Q Consensus 121 A~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~ 197 (813)
|+|++ ++|||||||++||+.. ...+.+++.++.++.|+|||++|||++.+.. +++++ .+++|+|+..++
T Consensus 157 a~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~-~~~~~-~l~~G~i~~~~~ 228 (233)
T PRK11629 157 ARALVNNPRLVLADEPTGNLDARN------ADSIFQLLGELNRLQGTAFLVVTHDLQLAKR-MSRQL-EMRDGRLTAELS 228 (233)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-hCEEE-EEECCEEEEEec
Confidence 99999 9999999999999999 9999999999876458999999999988765 45554 455599987764
No 98
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.1e-25 Score=239.38 Aligned_cols=180 Identities=14% Similarity=0.088 Sum_probs=131.4
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-----------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----------- 77 (813)
||+++|++++|.+. ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.-
T Consensus 1 ml~~~~l~~~~~~~--~~~l~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~ 72 (274)
T PRK13644 1 MIRLENVSYSYPDG--TPALENINLVI--KKGEYIGIIGKNGSGKSTLALHLNGLLR----PQKGKVLVSGIDTGDFSKL 72 (274)
T ss_pred CEEEEEEEEEcCCC--CceeeeeEEEE--eCCCEEEEECCCCCCHHHHHHHHhcCCC----CCCceEEECCEECCccccH
Confidence 48999999999642 56999999999 5899999999999999999999999987 88897310
Q ss_pred -----ccceecccccCCCchhHHHHhhCC-------Cccccc--------------------cchHHHHHHHHHHHHHHH
Q 003528 78 -----TKGIWMARCAGIEPCTLIMDLEGT-------DGRERG--------------------EDDTAFEKQSALFALAVS 125 (813)
Q Consensus 78 -----~~g~~~~~~~~~e~~~~vld~~g~-------~~~e~~--------------------~~~~~~erQrv~iA~ALa 125 (813)
..+++++..........+.+++.. ...+.. .....+|+||++||+|++
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~ 152 (274)
T PRK13644 73 QGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILT 152 (274)
T ss_pred HHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence 012222221100111223332211 110000 011123999999999999
Q ss_pred ---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccccc
Q 003528 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (813)
Q Consensus 126 ---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~ 202 (813)
++|||||||+|||+.. ...+.+.+.++.++ |.|||++|||++.+. .+++++++ ++|+++..|++.+++
T Consensus 153 ~~p~lllLDEPt~gLD~~~------~~~l~~~l~~l~~~-g~til~~tH~~~~~~-~~d~v~~l-~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDS------GIAVLERIKKLHEK-GKTIVYITHNLEELH-DADRIIVM-DRGKIVLEGEPENVL 223 (274)
T ss_pred cCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHhC-CCEEEEEecCHHHHh-hCCEEEEE-ECCEEEEECCHHHHh
Confidence 9999999999999999 99999999998764 999999999998875 45555555 559999999887765
Q ss_pred CCc
Q 003528 203 MET 205 (813)
Q Consensus 203 ~~~ 205 (813)
...
T Consensus 224 ~~~ 226 (274)
T PRK13644 224 SDV 226 (274)
T ss_pred cCh
Confidence 443
No 99
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.2e-25 Score=244.37 Aligned_cols=185 Identities=12% Similarity=0.049 Sum_probs=136.1
Q ss_pred CccEEEEeeeEEecccc--ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeec------
Q 003528 7 CCSTQLIDGDGTFNVSG--IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT------ 78 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~--~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~------ 78 (813)
.++|+++|+++.|+... ...+|+++||++ .+|++++|+|+||||||||+++|+|+.+ |++|++.-.
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i--~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~----p~~G~I~i~g~~~~~ 92 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTF--EKNKIYFIIGNSGSGKSTLVTHFNGLIK----SKYGTIQVGDIYIGD 92 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCCeEEECCEEccc
Confidence 35799999999996421 136999999999 5899999999999999999999999998 888973210
Q ss_pred -------------------------cceeccccc-CCCchhHHHHhhC-------CCccc--------------------
Q 003528 79 -------------------------KGIWMARCA-GIEPCTLIMDLEG-------TDGRE-------------------- 105 (813)
Q Consensus 79 -------------------------~g~~~~~~~-~~e~~~~vld~~g-------~~~~e-------------------- 105 (813)
.+++++... ...+ ..+.+++. ....+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 171 (320)
T PRK13631 93 KKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLE 171 (320)
T ss_pred ccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhc
Confidence 122333221 0111 12222221 11000
Q ss_pred -cccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccC
Q 003528 106 -RGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL 181 (813)
Q Consensus 106 -~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~ 181 (813)
.......+|+||++||+||+ ++|||||||++||+.. ...+++++.++.++ |.|||+||||++.+...++
T Consensus 172 ~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~------~~~l~~~L~~l~~~-g~TiiivtHd~~~~~~~ad 244 (320)
T PRK13631 172 RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKG------EHEMMQLILDAKAN-NKTVFVITHTMEHVLEVAD 244 (320)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHH------HHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCC
Confidence 01112224999999999999 9999999999999999 99999999998764 8999999999998766666
Q ss_pred cceeeecCCeEEEecCcccccCCcc
Q 003528 182 EPVLREDIQKIWDSVPKPQAHMETP 206 (813)
Q Consensus 182 ~~vll~~~GkI~~~g~~~e~~~~~~ 206 (813)
+++++.+ |+|+..|++.+++....
T Consensus 245 ri~vl~~-G~i~~~g~~~~~~~~~~ 268 (320)
T PRK13631 245 EVIVMDK-GKILKTGTPYEIFTDQH 268 (320)
T ss_pred EEEEEEC-CEEEEeCCHHHHhcCHH
Confidence 6655555 99999999887765543
No 100
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.92 E-value=2e-25 Score=231.09 Aligned_cols=174 Identities=11% Similarity=0.122 Sum_probs=126.8
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----e--------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----T-------- 77 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----~-------- 77 (813)
|+++|++++|++. ...+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+.. .
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~ 73 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNV--YKGEIFGLLGHNGAGKTTTLKMLTGELR----PTSGTAYINGYSIRTDRKAA 73 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEECCEecccchHHH
Confidence 5789999999641 146999999999 5899999999999999999999999997 8889731 0
Q ss_pred --ccceecccccCCCchhHHHHhh-------CCCcccc---c-----------------cchHHHHHHHHHHHHHHH---
Q 003528 78 --TKGIWMARCAGIEPCTLIMDLE-------GTDGRER---G-----------------EDDTAFEKQSALFALAVS--- 125 (813)
Q Consensus 78 --~~g~~~~~~~~~e~~~~vld~~-------g~~~~e~---~-----------------~~~~~~erQrv~iA~ALa--- 125 (813)
..++.++.. ...+...+.++. +....+. . .....+|+||++||+|++
T Consensus 74 ~~~i~~v~q~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 152 (220)
T cd03263 74 RQSLGYCPQFD-ALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGP 152 (220)
T ss_pred hhhEEEecCcC-CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCC
Confidence 112222221 111112222221 1111000 0 001123999999999999
Q ss_pred hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccc
Q 003528 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (813)
Q Consensus 126 dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e 200 (813)
++||+||||++||+.. ...+.+++.++.+ +.|+|++|||++.+...+++++++.+ |+++..|++.+
T Consensus 153 ~llllDEP~~~LD~~~------~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~-g~i~~~~~~~~ 218 (220)
T cd03263 153 SVLLLDEPTSGLDPAS------RRAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSD-GKLRCIGSPQE 218 (220)
T ss_pred CEEEECCCCCCCCHHH------HHHHHHHHHHHhc--CCEEEEEcCCHHHHHHhcCEEEEEEC-CEEEecCCHHH
Confidence 9999999999999999 9999999999864 58999999999988765665555544 99998886543
No 101
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.6e-25 Score=241.95 Aligned_cols=180 Identities=12% Similarity=0.097 Sum_probs=133.5
Q ss_pred cEEEEeeeEEecccc--ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee---------
Q 003528 9 STQLIDGDGTFNVSG--IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT--------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~--~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~--------- 77 (813)
+|+++|+++.|++.. .+.+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.-
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i--~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~----p~~G~i~~~g~~~~~~~ 75 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFEL--EEGSFVALVGHTGSGKSTLMQHFNALLK----PSSGTITIAGYHITPET 75 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEE--eCCCEEEEECCCCCCHHHHHHHHhcCCC----CCCcEEEECCEECcccc
Confidence 689999999997411 136999999999 5899999999999999999999999998 89997210
Q ss_pred ----------ccceeccccc-CCCchhHHHHhh-------------------------CCC-c--cccccchHHHHHHHH
Q 003528 78 ----------TKGIWMARCA-GIEPCTLIMDLE-------------------------GTD-G--RERGEDDTAFEKQSA 118 (813)
Q Consensus 78 ----------~~g~~~~~~~-~~e~~~~vld~~-------------------------g~~-~--~e~~~~~~~~erQrv 118 (813)
..++.++... ... ...+.+++ |+. . .........+||||+
T Consensus 76 ~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl 154 (287)
T PRK13641 76 GNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRV 154 (287)
T ss_pred ccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHH
Confidence 1123333211 011 11222222 111 0 001111223499999
Q ss_pred HHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEe
Q 003528 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (813)
Q Consensus 119 ~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~ 195 (813)
+||+||+ ++|||||||+|||+.. ...+.+++.++.++ |.|||++|||++.+...+++++++.+ |+++..
T Consensus 155 ~laral~~~p~lLlLDEPt~gLD~~~------~~~l~~~l~~l~~~-g~tvlivsH~~~~~~~~~d~v~~l~~-G~i~~~ 226 (287)
T PRK13641 155 AIAGVMAYEPEILCLDEPAAGLDPEG------RKEMMQLFKDYQKA-GHTVILVTHNMDDVAEYADDVLVLEH-GKLIKH 226 (287)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEe
Confidence 9999999 9999999999999999 99999999998754 89999999999988766776666655 999999
Q ss_pred cCcccccC
Q 003528 196 VPKPQAHM 203 (813)
Q Consensus 196 g~~~e~~~ 203 (813)
|++.+++.
T Consensus 227 g~~~~~~~ 234 (287)
T PRK13641 227 ASPKEIFS 234 (287)
T ss_pred CCHHHHhc
Confidence 98776654
No 102
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.92 E-value=1.9e-25 Score=245.80 Aligned_cols=187 Identities=12% Similarity=0.085 Sum_probs=138.5
Q ss_pred CCCccEEEEeeeEEeccc-cccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCC---CCeee----
Q 003528 5 EECCSTQLIDGDGTFNVS-GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF---KGRSQ---- 76 (813)
Q Consensus 5 ~~~~~Iel~dls~~y~~~-~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~---sG~~q---- 76 (813)
.+.++|+++|+++.|... +...+++++||++ .+|++++|+|+||||||||+++|+|+.. |. +|++.
T Consensus 8 ~~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i--~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~----p~~~~sG~I~~~G~ 81 (330)
T PRK09473 8 QADALLDVKDLRVTFSTPDGDVTAVNDLNFSL--RAGETLGIVGESGSGKSQTAFALMGLLA----ANGRIGGSATFNGR 81 (330)
T ss_pred CCCceEEEeCeEEEEecCCCCEEEEeeeEEEE--cCCCEEEEECCCCchHHHHHHHHHcCCC----CCCCCCeEEEECCE
Confidence 345689999999999531 1246999999999 5899999999999999999999999997 53 78621
Q ss_pred ---------------eccceeccccc-CCCchhHHHH--------------------------hhCCCccc-----cccc
Q 003528 77 ---------------TTKGIWMARCA-GIEPCTLIMD--------------------------LEGTDGRE-----RGED 109 (813)
Q Consensus 77 ---------------~~~g~~~~~~~-~~e~~~~vld--------------------------~~g~~~~e-----~~~~ 109 (813)
...+++++... ...+.+.+.+ ..|++... ....
T Consensus 82 ~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~ 161 (330)
T PRK09473 82 EILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHE 161 (330)
T ss_pred ECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCccc
Confidence 11234444431 1111111111 11221100 0111
Q ss_pred hHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceee
Q 003528 110 DTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 186 (813)
Q Consensus 110 ~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll 186 (813)
...+|+|||+||+||+ ++||+||||++||+.. +..+++++.++.++.|.|+||||||++.+...++++++|
T Consensus 162 LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~------~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm 235 (330)
T PRK09473 162 FSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTV------QAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVM 235 (330)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 2234999999999999 9999999999999999 999999999998767999999999999887667766666
Q ss_pred ecCCeEEEecCcccccCC
Q 003528 187 EDIQKIWDSVPKPQAHME 204 (813)
Q Consensus 187 ~~~GkI~~~g~~~e~~~~ 204 (813)
.+ |+|++.|++.+++.+
T Consensus 236 ~~-G~ive~g~~~~i~~~ 252 (330)
T PRK09473 236 YA-GRTMEYGNARDVFYQ 252 (330)
T ss_pred EC-CEEEEECCHHHHHhC
Confidence 55 999999998877643
No 103
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.92 E-value=1e-25 Score=250.31 Aligned_cols=172 Identities=18% Similarity=0.124 Sum_probs=129.6
Q ss_pred EEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee-------------------e
Q 003528 17 GTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ-------------------T 77 (813)
Q Consensus 17 ~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q-------------------~ 77 (813)
|+|++ +.+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|++. .
T Consensus 1 ~~~~~---~~~l~~vs~~i--~~Gei~~l~G~sGsGKSTLLr~L~Gl~~----p~~G~I~i~G~~i~~~~~~~~~~~rr~ 71 (363)
T TIGR01186 1 KKTGG---KKGVNDADLAI--AKGEIFVIMGLSGSGKSTTVRMLNRLIE----PTAGQIFIDGENIMKQSPVELREVRRK 71 (363)
T ss_pred CccCC---ceeEEeeEEEE--cCCCEEEEECCCCChHHHHHHHHhCCCC----CCceEEEECCEECCcCCHHHHHHHHhC
Confidence 35655 67999999999 5899999999999999999999999998 8999721 1
Q ss_pred ccceecccccC------CCchhHHHHhhCCCccccccc--------------------hHHHHHHHHHHHHHHH---hHh
Q 003528 78 TKGIWMARCAG------IEPCTLIMDLEGTDGRERGED--------------------DTAFEKQSALFALAVS---DIV 128 (813)
Q Consensus 78 ~~g~~~~~~~~------~e~~~~vld~~g~~~~e~~~~--------------------~~~~erQrv~iA~ALa---dvL 128 (813)
..++++++... .+++.+.....|....++.+. ...+|||||+||+||+ ++|
T Consensus 72 ~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iL 151 (363)
T TIGR01186 72 KIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDIL 151 (363)
T ss_pred cEEEEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 22344433211 223333332223222111111 1123999999999999 999
Q ss_pred hhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccccCC
Q 003528 129 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHME 204 (813)
Q Consensus 129 LLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~~~ 204 (813)
||||||++||+.. +..+.+.+.++.++.|+||||||||++++...+++++++.+ |+|+..|++++++.+
T Consensus 152 LlDEP~saLD~~~------r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~-G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 152 LMDEAFSALDPLI------RDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKA-GEIVQVGTPDEILRN 220 (363)
T ss_pred EEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC-CEEEeeCCHHHHHhC
Confidence 9999999999999 99999999999766689999999999988776776666655 999999998877653
No 104
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.92 E-value=1.9e-25 Score=229.11 Aligned_cols=167 Identities=13% Similarity=0.081 Sum_probs=122.2
Q ss_pred EEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----e--------c
Q 003528 11 QLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----T--------T 78 (813)
Q Consensus 11 el~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----~--------~ 78 (813)
+++|++++|++. ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+.. . .
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~ 72 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDL--YAGEIIALTGKNGAGKTTLAKILAGLIK----ESSGSILLNGKPIKAKERRKS 72 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhcCCC----CCceEEEECCEEhhhHHhhcc
Confidence 367999999652 46999999999 5899999999999999999999999997 8999731 1 1
Q ss_pred cceecccccCCCchhHHHHhhCCCc----cc--c-----------------ccchHHHHHHHHHHHHHHH---hHhhhcc
Q 003528 79 KGIWMARCAGIEPCTLIMDLEGTDG----RE--R-----------------GEDDTAFEKQSALFALAVS---DIVLINM 132 (813)
Q Consensus 79 ~g~~~~~~~~~e~~~~vld~~g~~~----~e--~-----------------~~~~~~~erQrv~iA~ALa---dvLLLDE 132 (813)
.++.++..........+.++..... .. + ......+||||++||+|++ ++|||||
T Consensus 73 i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 152 (205)
T cd03226 73 IGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDE 152 (205)
T ss_pred eEEEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 2233333110011123333332110 00 0 0111223999999999999 9999999
Q ss_pred CCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEE
Q 003528 133 WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (813)
Q Consensus 133 PtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~ 193 (813)
||++||+.. .+.+.+.+.++.++ |.|+|++|||++.+...+++++++.+ |+++
T Consensus 153 Pt~~LD~~~------~~~l~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 153 PTSGLDYKN------MERVGELIRELAAQ-GKAVIVITHDYEFLAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred CCccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEC
Confidence 999999999 99999999998764 89999999999888766666655554 8874
No 105
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=4.2e-25 Score=236.24 Aligned_cols=182 Identities=11% Similarity=0.094 Sum_probs=132.2
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---------- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---------- 77 (813)
++|+++|++++|++. ...+|+++||++ .+|++++|+||||||||||+++|+|+.+ |++|++.-
T Consensus 6 ~~l~i~~l~~~~~~~-~~~~l~~isl~i--~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~----~~~G~i~~~g~~~~~~~~ 78 (269)
T PRK13648 6 SIIVFKNVSFQYQSD-ASFTLKDVSFNI--PKGQWTSIVGHNGSGKSTIAKLMIGIEK----VKSGEIFYNNQAITDDNF 78 (269)
T ss_pred ceEEEEEEEEEcCCC-CCcceeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCCC----CCceEEEECCEECCcCCH
Confidence 479999999999752 135899999999 5899999999999999999999999997 88897310
Q ss_pred -----ccceeccccc-C------CCchhHHHHhhCCCcc--------------------ccccchHHHHHHHHHHHHHHH
Q 003528 78 -----TKGIWMARCA-G------IEPCTLIMDLEGTDGR--------------------ERGEDDTAFEKQSALFALAVS 125 (813)
Q Consensus 78 -----~~g~~~~~~~-~------~e~~~~vld~~g~~~~--------------------e~~~~~~~~erQrv~iA~ALa 125 (813)
..+++++... . .++..+.....+.... ........+|+||++||+|++
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (269)
T PRK13648 79 EKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLA 158 (269)
T ss_pred HHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 1122333221 0 1111111111111100 001112224999999999999
Q ss_pred ---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccccc
Q 003528 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (813)
Q Consensus 126 ---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~ 202 (813)
++|||||||++||+.. ...+++.+.++.++.|.|+|+|||+++.+.. +++++++ ++|+++..|++.+..
T Consensus 159 ~~p~lllLDEPt~~LD~~~------~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l-~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 159 LNPSVIILDEATSMLDPDA------RQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVM-NKGTVYKEGTPTEIF 230 (269)
T ss_pred cCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEE-ECCEEEEecCHHHHh
Confidence 9999999999999999 9999999999876558999999999988873 5555555 559999999877765
Q ss_pred CC
Q 003528 203 ME 204 (813)
Q Consensus 203 ~~ 204 (813)
..
T Consensus 231 ~~ 232 (269)
T PRK13648 231 DH 232 (269)
T ss_pred cC
Confidence 43
No 106
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.6e-25 Score=232.78 Aligned_cols=175 Identities=15% Similarity=0.138 Sum_probs=130.0
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-----------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----------- 77 (813)
+|+++|+++.|++ +.+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~ 72 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDC--PQGETLVLLGPSGAGKSSLLRVLNLLEM----PRSGTLNIAGNHFDFSKTP 72 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCEeccccccc
Confidence 6999999999976 67999999999 5899999999999999999999999997 88897321
Q ss_pred ----------ccceecccccCCCchhHHHHhh--------CCCcccc--------------------ccchHHHHHHHHH
Q 003528 78 ----------TKGIWMARCAGIEPCTLIMDLE--------GTDGRER--------------------GEDDTAFEKQSAL 119 (813)
Q Consensus 78 ----------~~g~~~~~~~~~e~~~~vld~~--------g~~~~e~--------------------~~~~~~~erQrv~ 119 (813)
..+++.+. ....+...+.++. +....+. ......+|+||++
T Consensus 73 ~~~~~~~~~~~i~~~~q~-~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~ 151 (242)
T PRK11124 73 SDKAIRELRRNVGMVFQQ-YNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVA 151 (242)
T ss_pred chhhHHHHHhheEEEecC-ccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH
Confidence 01122222 1111112222222 1111000 0011123999999
Q ss_pred HHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEec
Q 003528 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (813)
Q Consensus 120 iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g 196 (813)
||+|++ +++|+||||++||+.. ...+.+.+.++.++ |+|+|++|||++.+...+++.+++.+ |+++..|
T Consensus 152 laral~~~p~llilDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~-g~i~~~~ 223 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEI------TAQIVSIIRELAET-GITQVIVTHEVEVARKTASRVVYMEN-GHIVEQG 223 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCEEEEEEC-CEEEEeC
Confidence 999999 9999999999999999 99999999998754 89999999999988766666665555 9999888
Q ss_pred Ccccc
Q 003528 197 PKPQA 201 (813)
Q Consensus 197 ~~~e~ 201 (813)
++.+.
T Consensus 224 ~~~~~ 228 (242)
T PRK11124 224 DASCF 228 (242)
T ss_pred CHHHh
Confidence 76543
No 107
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.92 E-value=2.8e-25 Score=237.14 Aligned_cols=181 Identities=15% Similarity=0.159 Sum_probs=132.4
Q ss_pred cEEEEeeeEEeccc------cccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-----
Q 003528 9 STQLIDGDGTFNVS------GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~------~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----- 77 (813)
+|+++|+++.|+.. +.+.+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~i 75 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSI--EEGETVGLLGRSGCGKSTLARLLLGLEK----PAQGTVSFRGQDL 75 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEECCEEc
Confidence 58999999999631 0257999999999 5899999999999999999999999997 88897310
Q ss_pred -------------ccceeccccc-CCCchhHHHHhh--------CCCccc---------------------cccchHHHH
Q 003528 78 -------------TKGIWMARCA-GIEPCTLIMDLE--------GTDGRE---------------------RGEDDTAFE 114 (813)
Q Consensus 78 -------------~~g~~~~~~~-~~e~~~~vld~~--------g~~~~e---------------------~~~~~~~~e 114 (813)
..++.++... ...+...+.++. +..... .......+|
T Consensus 76 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe 155 (265)
T TIGR02769 76 YQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQ 155 (265)
T ss_pred cccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHH
Confidence 1222233211 111111222211 111100 001112239
Q ss_pred HHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCe
Q 003528 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (813)
Q Consensus 115 rQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~Gk 191 (813)
+||++||+|++ ++|||||||++||+.. ...+.+.+.++.+..|.|||+||||++.+...+++++++.+ |+
T Consensus 156 ~qrv~laral~~~p~illLDEPt~~LD~~~------~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~-G~ 228 (265)
T TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVL------QAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDK-GQ 228 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeC-CE
Confidence 99999999999 9999999999999999 99999999998765589999999999988766666666654 99
Q ss_pred EEEecCccccc
Q 003528 192 IWDSVPKPQAH 202 (813)
Q Consensus 192 I~~~g~~~e~~ 202 (813)
++..|++.++.
T Consensus 229 i~~~g~~~~~~ 239 (265)
T TIGR02769 229 IVEECDVAQLL 239 (265)
T ss_pred EEEECCHHHHc
Confidence 99998877654
No 108
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.92 E-value=2.3e-25 Score=253.46 Aligned_cols=184 Identities=15% Similarity=0.135 Sum_probs=141.5
Q ss_pred CccEEEEeeeEEeccc--------cccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-
Q 003528 7 CCSTQLIDGDGTFNVS--------GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT- 77 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~--------~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~- 77 (813)
.+.++++|+++.|... +...++++|||.+ .+|+++||+|+||||||||.++|+|+.. |++|....
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l--~~GE~lglVGeSGsGKSTlar~i~gL~~----P~~G~i~~~ 351 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDL--REGETLGLVGESGSGKSTLARILAGLLP----PSSGSIIFD 351 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEe--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEEe
Confidence 4578999999999731 1347899999999 5899999999999999999999999998 88887311
Q ss_pred ----------------ccceecccccC-CCchhHHHHhhCC-------C-ccccccch---------------------H
Q 003528 78 ----------------TKGIWMARCAG-IEPCTLIMDLEGT-------D-GRERGEDD---------------------T 111 (813)
Q Consensus 78 ----------------~~g~~~~~~~~-~e~~~~vld~~g~-------~-~~e~~~~~---------------------~ 111 (813)
..-+.||+... ..+..++.+.+.- . ..++.++. .
T Consensus 352 g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elS 431 (539)
T COG1123 352 GQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELS 431 (539)
T ss_pred CcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcC
Confidence 11123333321 3344444433311 0 11111111 1
Q ss_pred HHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeec
Q 003528 112 AFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (813)
Q Consensus 112 ~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~ 188 (813)
.+||||++||+||+ ++||+|||++.||+.. +..|+++++++.++.|.|.||||||+..+...|+++++|.+
T Consensus 432 GGQrQRvaIARALa~~P~lli~DEp~SaLDvsv------qa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~ 505 (539)
T COG1123 432 GGQRQRVAIARALALEPKLLILDEPVSALDVSV------QAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYD 505 (539)
T ss_pred cchhHHHHHHHHHhcCCCEEEecCCccccCHHH------HHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEEC
Confidence 12999999999999 9999999999999999 99999999999999999999999999999988877777776
Q ss_pred CCeEEEecCcccccC
Q 003528 189 IQKIWDSVPKPQAHM 203 (813)
Q Consensus 189 ~GkI~~~g~~~e~~~ 203 (813)
|+|++.|+..+++.
T Consensus 506 -G~iVE~G~~~~v~~ 519 (539)
T COG1123 506 -GRIVEEGPTEKVFE 519 (539)
T ss_pred -CeEEEeCCHHHHhc
Confidence 99999997776654
No 109
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.9e-25 Score=237.63 Aligned_cols=182 Identities=14% Similarity=0.103 Sum_probs=132.9
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee-----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----------- 76 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----------- 76 (813)
++|+++|++++|++.....+|+++||++ .+|++++|+|+||||||||+++|+|+.+ |++|++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i--~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~~g~~i~~~~~ 76 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQLNGVSFSI--TKGEWVSIIGQNGSGKSTTARLIDGLFE----EFEGKVKIDGELLTAENV 76 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeeeeeeEEEE--cCCCEEEEECCCCCcHHHHHHHHhcCCC----CCCCEEEECCEECCcCCH
Confidence 3799999999997421135899999999 5899999999999999999999999998 8899731
Q ss_pred ----eccceecccccCCCchhHHHHhh-------CCCcccc--------------------ccchHHHHHHHHHHHHHHH
Q 003528 77 ----TTKGIWMARCAGIEPCTLIMDLE-------GTDGRER--------------------GEDDTAFEKQSALFALAVS 125 (813)
Q Consensus 77 ----~~~g~~~~~~~~~e~~~~vld~~-------g~~~~e~--------------------~~~~~~~erQrv~iA~ALa 125 (813)
...++.++..........+.++. +....+. ......+|+||++||+||+
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~ 156 (277)
T PRK13642 77 WNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIA 156 (277)
T ss_pred HHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 01233333321001111222222 1111000 0011123999999999999
Q ss_pred ---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccccc
Q 003528 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (813)
Q Consensus 126 ---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~ 202 (813)
++||+||||++||+.. .+.+.+++.++.++.|.|||++|||++.+. .+++++++. .|+++..|++.+++
T Consensus 157 ~~p~llllDEPt~~LD~~~------~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~-~G~i~~~g~~~~~~ 228 (277)
T PRK13642 157 LRPEIIILDESTSMLDPTG------RQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMK-AGEIIKEAAPSELF 228 (277)
T ss_pred cCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEE-CCEEEEeCCHHHHh
Confidence 9999999999999999 999999999997656899999999998886 455555554 59999999877765
Q ss_pred C
Q 003528 203 M 203 (813)
Q Consensus 203 ~ 203 (813)
.
T Consensus 229 ~ 229 (277)
T PRK13642 229 A 229 (277)
T ss_pred c
Confidence 4
No 110
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.92 E-value=2.9e-25 Score=228.97 Aligned_cols=166 Identities=17% Similarity=0.234 Sum_probs=120.6
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-----------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----------- 77 (813)
||+++|++++|+++ ..+|+++||++ .+|++++|+||||||||||+++|+|+.+ |.+|+..-
T Consensus 1 ~l~~~~l~~~~~~~--~~il~~is~~i--~~G~~~~l~G~nGsGKSTLl~~i~Gl~~----~~~G~i~~~g~~~~~~~~~ 72 (214)
T TIGR02673 1 MIEFHNVSKAYPGG--VAALHDVSLHI--RKGEFLFLTGPSGAGKTTLLKLLYGALT----PSRGQVRIAGEDVNRLRGR 72 (214)
T ss_pred CEEEEeeeEEeCCC--ceeecceeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCEEcccCCHH
Confidence 48999999999531 57999999999 5899999999999999999999999997 88897310
Q ss_pred -------ccceecccccCCCchhHHHHhh-------CCCccc--------------------cccchHHHHHHHHHHHHH
Q 003528 78 -------TKGIWMARCAGIEPCTLIMDLE-------GTDGRE--------------------RGEDDTAFEKQSALFALA 123 (813)
Q Consensus 78 -------~~g~~~~~~~~~e~~~~vld~~-------g~~~~e--------------------~~~~~~~~erQrv~iA~A 123 (813)
..++.++.. ...+...+.++. +..... .......+|+||++||+|
T Consensus 73 ~~~~~~~~i~~~~q~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 151 (214)
T TIGR02673 73 QLPLLRRRIGVVFQDF-RLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARA 151 (214)
T ss_pred HHHHHHhheEEEecCh-hhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 011222221 111111222221 111000 000112239999999999
Q ss_pred HH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCe
Q 003528 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (813)
Q Consensus 124 La---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~Gk 191 (813)
++ ++|||||||++||+.. +..+.+.++++.++ |.|+|+||||++.+...+++++++.+ |+
T Consensus 152 l~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tii~~tH~~~~~~~~~d~i~~l~~-G~ 214 (214)
T TIGR02673 152 IVNSPPLLLADEPTGNLDPDL------SERILDLLKRLNKR-GTTVIVATHDLSLVDRVAHRVIILDD-GR 214 (214)
T ss_pred HhCCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCEEEEecC-CC
Confidence 99 9999999999999999 99999999998764 89999999999888766665555544 63
No 111
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.7e-25 Score=222.50 Aligned_cols=179 Identities=17% Similarity=0.249 Sum_probs=147.2
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ---------- 76 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q---------- 76 (813)
|+++.+.+++.+|.+.+ ..+|+++|+++ .+|+.++++||+|||||||||+++|+.. |..|+.+
T Consensus 1 M~~l~~~~~sl~y~g~~-~~~le~vsL~i--a~ge~vv~lGpSGcGKTTLLnl~AGf~~----P~~G~i~l~~r~i~gPg 73 (259)
T COG4525 1 MCMLNVSHLSLSYEGKP-RSALEDVSLTI--ASGELVVVLGPSGCGKTTLLNLIAGFVT----PSRGSIQLNGRRIEGPG 73 (259)
T ss_pred CceeehhheEEecCCcc-hhhhhccceee--cCCCEEEEEcCCCccHHHHHHHHhcCcC----cccceEEECCEeccCCC
Confidence 35799999999998732 45999999999 4799999999999999999999999997 9999843
Q ss_pred eccceecccc------cCCCchhHHHHhhCCCccccccchHH--------------------HHHHHHHHHHHHH---hH
Q 003528 77 TTKGIWMARC------AGIEPCTLIMDLEGTDGRERGEDDTA--------------------FEKQSALFALAVS---DI 127 (813)
Q Consensus 77 ~~~g~~~~~~------~~~e~~~~vld~~g~~~~e~~~~~~~--------------------~erQrv~iA~ALa---dv 127 (813)
..+|.+||+. +..+|+.|.+...|.+..+|.+.... .|||||.||+||+ ++
T Consensus 74 aergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~ 153 (259)
T COG4525 74 AERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQL 153 (259)
T ss_pred ccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcce
Confidence 2345666554 23567777777778876665443322 2999999999999 99
Q ss_pred hhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeee-cCCeEEEecCc
Q 003528 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE-DIQKIWDSVPK 198 (813)
Q Consensus 128 LLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~-~~GkI~~~g~~ 198 (813)
|+||||+.+||.-. ++++.+++.++.+..|+.+++||||++++...+.+.+++. ..|+|+..-++
T Consensus 154 LlLDEPfgAlDa~t------Re~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 154 LLLDEPFGALDALT------REQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred EeecCchhhHHHHH------HHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 99999999999999 9999999999999899999999999999887777766665 23788876654
No 112
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.92 E-value=1.8e-25 Score=243.14 Aligned_cols=168 Identities=11% Similarity=0.087 Sum_probs=125.1
Q ss_pred EEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee--------------cccee
Q 003528 17 GTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT--------------TKGIW 82 (813)
Q Consensus 17 ~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~--------------~~g~~ 82 (813)
|+|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..- ..|++
T Consensus 1 k~y~~---~~~l~~vs~~i--~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~i~~~ 71 (302)
T TIGR01188 1 KVYGD---FKAVDGVNFKV--REGEVFGFLGPNGAGKTTTIRMLTTLLR----PTSGTARVAGYDVVREPRKVRRSIGIV 71 (302)
T ss_pred CeeCC---eeEEeeeeEEE--cCCcEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCEEcccCHHHHHhhcEEe
Confidence 35654 67999999999 5899999999999999999999999998 89998310 12333
Q ss_pred cccccCCCchhHHHHhh-------CCCccc--------------------cccchHHHHHHHHHHHHHHH---hHhhhcc
Q 003528 83 MARCAGIEPCTLIMDLE-------GTDGRE--------------------RGEDDTAFEKQSALFALAVS---DIVLINM 132 (813)
Q Consensus 83 ~~~~~~~e~~~~vld~~-------g~~~~e--------------------~~~~~~~~erQrv~iA~ALa---dvLLLDE 132 (813)
++. ....+...+.++. +....+ .......+||||++||+||+ ++|||||
T Consensus 72 ~q~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 150 (302)
T TIGR01188 72 PQY-ASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDE 150 (302)
T ss_pred cCC-CCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 332 2222222222221 221110 00111123999999999999 9999999
Q ss_pred CCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccccc
Q 003528 133 WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (813)
Q Consensus 133 PtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~ 202 (813)
||+|||+.. +..+.++++++.++ |+|||++||+++++...|++++++.+ |+++..|++.++.
T Consensus 151 Pt~gLD~~~------~~~l~~~l~~~~~~-g~tvi~~sH~~~~~~~~~d~v~~l~~-G~i~~~g~~~~l~ 212 (302)
T TIGR01188 151 PTTGLDPRT------RRAIWDYIRALKEE-GVTILLTTHYMEEADKLCDRIAIIDH-GRIIAEGTPEELK 212 (302)
T ss_pred CCcCCCHHH------HHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEEC-CEEEEECCHHHHH
Confidence 999999999 99999999999765 89999999999988876776666655 9999999877654
No 113
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.92 E-value=4.1e-25 Score=234.76 Aligned_cols=179 Identities=14% Similarity=0.083 Sum_probs=132.8
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----e------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----T------ 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----~------ 77 (813)
++|+++|+++.|++ ..+|+++||++ .+|++++|+||||||||||+++|+|+.+ |++|++. .
T Consensus 5 ~~l~~~~l~~~~~~---~~il~~is~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~~~~~~i 75 (258)
T PRK11701 5 PLLSVRGLTKLYGP---RKGCRDVSFDL--YPGEVLGIVGESGSGKTTLLNALSARLA----PDAGEVHYRMRDGQLRDL 75 (258)
T ss_pred ceEEEeeeEEEcCC---ceeeeeeeEEE--eCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCCEEEECCcccccccc
Confidence 36999999999975 57999999999 5899999999999999999999999997 8888731 1
Q ss_pred --------------ccceeccccc-CCC-------chhHH-------------------HHhhCCCc---cccccchHHH
Q 003528 78 --------------TKGIWMARCA-GIE-------PCTLI-------------------MDLEGTDG---RERGEDDTAF 113 (813)
Q Consensus 78 --------------~~g~~~~~~~-~~e-------~~~~v-------------------ld~~g~~~---~e~~~~~~~~ 113 (813)
..+++++... ... ++... ++..++.. .........+
T Consensus 76 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 76 YALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGG 155 (258)
T ss_pred ccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHH
Confidence 0122222221 011 11100 01111110 0111122334
Q ss_pred HHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCC
Q 003528 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (813)
Q Consensus 114 erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~G 190 (813)
|+||++||+|++ ++|||||||++||+.. .+.+.+.+.++.++.|.|||++|||++.+...+++++++. +|
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~-~g 228 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSV------QARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMK-QG 228 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEE-CC
Confidence 999999999999 9999999999999999 9999999999876558999999999998876666665555 49
Q ss_pred eEEEecCccccc
Q 003528 191 KIWDSVPKPQAH 202 (813)
Q Consensus 191 kI~~~g~~~e~~ 202 (813)
+++..|++.+++
T Consensus 229 ~i~~~~~~~~~~ 240 (258)
T PRK11701 229 RVVESGLTDQVL 240 (258)
T ss_pred EEEEeCCHHHHh
Confidence 999998877654
No 114
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.92 E-value=3.6e-25 Score=234.22 Aligned_cols=177 Identities=18% Similarity=0.206 Sum_probs=130.5
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee------------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------------ 77 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~------------ 77 (813)
|+++|+++.|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.. |++|+..-
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~i~~~~~~~ 71 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSV--AAGEKVALIGPSGSGKSTILRILMTLEP----IDEGQIQVEGEQLYHMPGRN 71 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCEEcccccccc
Confidence 578999999975 67999999999 5899999999999999999999999997 88887310
Q ss_pred ----------------ccceecccccCCCchhHHHHhhC--------CCcccc--------------------ccchHHH
Q 003528 78 ----------------TKGIWMARCAGIEPCTLIMDLEG--------TDGRER--------------------GEDDTAF 113 (813)
Q Consensus 78 ----------------~~g~~~~~~~~~e~~~~vld~~g--------~~~~e~--------------------~~~~~~~ 113 (813)
..+++++.. ...+...+.++.. ...... ......+
T Consensus 72 ~~~~~~~~~~~~~~~~~i~~v~q~~-~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 72 GPLVPADEKHLRQMRNKIGMVFQSF-NLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGG 150 (252)
T ss_pred ccccccchhHHHHHhhCeEEEecCc-ccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHH
Confidence 011122211 1111122222221 111000 0011123
Q ss_pred HHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCC
Q 003528 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (813)
Q Consensus 114 erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~G 190 (813)
|+||++||+|++ ++|||||||++||+.. ...+.+++.++.++.|.|+|++|||++.+...+++.+++.+ |
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~-G 223 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPEL------VGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDK-G 223 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEEC-C
Confidence 999999999999 9999999999999999 99999999998765589999999999988766666655555 9
Q ss_pred eEEEecCcccccC
Q 003528 191 KIWDSVPKPQAHM 203 (813)
Q Consensus 191 kI~~~g~~~e~~~ 203 (813)
+++..|++.++..
T Consensus 224 ~i~~~g~~~~~~~ 236 (252)
T TIGR03005 224 RIVEQGKPDEIFR 236 (252)
T ss_pred EEEEeCCHHHHhc
Confidence 9999887766543
No 115
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.92 E-value=4.5e-25 Score=219.10 Aligned_cols=159 Identities=17% Similarity=0.132 Sum_probs=121.9
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccccCC
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI 89 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~~~~ 89 (813)
|+++|++++|++ .++++++||++ .+|++++|+|||||||||||++|+|+.+ |++|+.. ..|.-....
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i--~~Ge~~~l~G~nGsGKSTLl~~i~G~~~----~~~G~v~-~~g~~~~~~--- 67 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSV--RRGEVHALLGENGAGKSTLMKILSGLYK----PDSGEIL-VDGKEVSFA--- 67 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEE--eCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEE-ECCEECCcC---
Confidence 578999999976 57999999999 5899999999999999999999999998 8889742 112111100
Q ss_pred CchhHHHHhhCCCccccccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceE
Q 003528 90 EPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTL 166 (813)
Q Consensus 90 e~~~~vld~~g~~~~e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TI 166 (813)
..........+. ......+|+||++||+|++ +++|+||||++||+.. .+.+.+.++++.++ |.|+
T Consensus 68 ~~~~~~~~~i~~-----~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~------~~~l~~~l~~~~~~-~~ti 135 (163)
T cd03216 68 SPRDARRAGIAM-----VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAE------VERLFKVIRRLRAQ-GVAV 135 (163)
T ss_pred CHHHHHhcCeEE-----EEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHH------HHHHHHHHHHHHHC-CCEE
Confidence 000000000111 0114567999999999999 9999999999999999 99999999998754 8999
Q ss_pred EEEeecCCCcccccCcceeeecCCeEEE
Q 003528 167 MFVIRDKTRTPLENLEPVLREDIQKIWD 194 (813)
Q Consensus 167 L~VtHD~~~~~~~~~~~vll~~~GkI~~ 194 (813)
|++|||++.+...+++.+++.+ |+++.
T Consensus 136 ii~sh~~~~~~~~~d~~~~l~~-g~i~~ 162 (163)
T cd03216 136 IFISHRLDEVFEIADRVTVLRD-GRVVG 162 (163)
T ss_pred EEEeCCHHHHHHhCCEEEEEEC-CEEEe
Confidence 9999999887765666666555 98864
No 116
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.92 E-value=2.9e-25 Score=229.54 Aligned_cols=168 Identities=24% Similarity=0.230 Sum_probs=119.9
Q ss_pred EEEEeeeEEecccc-ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-----------
Q 003528 10 TQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----------- 77 (813)
Q Consensus 10 Iel~dls~~y~~~~-~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----------- 77 (813)
|+++|++++|++.. ...+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i--~~G~~~~l~G~nGsGKSTLl~~i~Gl~~----~~~G~i~~~g~~~~~~~~~ 74 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSI--EKGEFVAIVGPSGSGKSTLLNILGGLDR----PTSGEVRVDGTDISKLSEK 74 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEE--cCCCEEEEEcCCCCCHHHHHHHHhCCcC----CCceeEEECCEehhhcchh
Confidence 57899999996410 146999999999 5899999999999999999999999997 88897310
Q ss_pred --------ccceecccccCCCchhHHHHhh-------CCCccc--------------------cccchHHHHHHHHHHHH
Q 003528 78 --------TKGIWMARCAGIEPCTLIMDLE-------GTDGRE--------------------RGEDDTAFEKQSALFAL 122 (813)
Q Consensus 78 --------~~g~~~~~~~~~e~~~~vld~~-------g~~~~e--------------------~~~~~~~~erQrv~iA~ 122 (813)
..+++++. ....+...+.++. +..... .......+||||++||+
T Consensus 75 ~~~~~~~~~i~~~~q~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~ 153 (218)
T cd03255 75 ELAAFRRRHIGFVFQS-FNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIAR 153 (218)
T ss_pred HHHHHHhhcEEEEeec-cccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHH
Confidence 01122221 1111112222222 111000 00011123999999999
Q ss_pred HHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeE
Q 003528 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (813)
Q Consensus 123 ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI 192 (813)
|++ ++|||||||++||+.. ...+.+++.++.++.|+|||+||||++.+. .+++++++ ++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~------~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l-~~G~i 218 (218)
T cd03255 154 ALANDPKIILADEPTGNLDSET------GKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIEL-RDGKI 218 (218)
T ss_pred HHccCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEe-eCCcC
Confidence 999 9999999999999999 999999999997645899999999998776 55555555 44764
No 117
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.92 E-value=4e-25 Score=229.71 Aligned_cols=175 Identities=15% Similarity=0.139 Sum_probs=125.4
Q ss_pred cEEEEeeeEEecccc-ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----------
Q 003528 9 STQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~-~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---------- 77 (813)
+|+++|++++|++.. ...+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~~~~~~~ 74 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSI--KKGETLGLVGESGSGKSTLARAILGLLK----PTSGSIIFDGKDLLKLSR 74 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCEEccccch
Confidence 488999999996510 016999999999 5899999999999999999999999997 88897310
Q ss_pred --------ccceeccccc-CCCchhHHHHhh-------CCCcc-c----------------------cccchHHHHHHHH
Q 003528 78 --------TKGIWMARCA-GIEPCTLIMDLE-------GTDGR-E----------------------RGEDDTAFEKQSA 118 (813)
Q Consensus 78 --------~~g~~~~~~~-~~e~~~~vld~~-------g~~~~-e----------------------~~~~~~~~erQrv 118 (813)
..++.++... ...+...+.++. +.... . .......+|+||+
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 75 RLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred hhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHH
Confidence 1122222220 111111122211 10000 0 0011112399999
Q ss_pred HHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEe
Q 003528 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (813)
Q Consensus 119 ~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~ 195 (813)
+||+|++ ++|||||||++||+.. ...+.+.+.++.++.|.|||++|||++.+...+++++++.+ |+++..
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~-G~i~~~ 227 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSV------QAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYA-GKIVEE 227 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeC-CEEEec
Confidence 9999999 9999999999999999 99999999999765589999999999988766666665554 998764
Q ss_pred c
Q 003528 196 V 196 (813)
Q Consensus 196 g 196 (813)
|
T Consensus 228 g 228 (228)
T cd03257 228 G 228 (228)
T ss_pred C
Confidence 3
No 118
>PRK10908 cell division protein FtsE; Provisional
Probab=99.92 E-value=5e-25 Score=228.71 Aligned_cols=169 Identities=13% Similarity=0.106 Sum_probs=124.0
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-----------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----------- 77 (813)
||+++|+++.|.++ ..+|+++||++ .+|++++|+||||||||||+++|+|+.+ |++|+..-
T Consensus 1 ~l~~~~l~~~~~~~--~~~l~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~i~~~~~~ 72 (222)
T PRK10908 1 MIRFEHVSKAYLGG--RQALQGVTFHM--RPGEMAFLTGHSGAGKSTLLKLICGIER----PSAGKIWFSGHDITRLKNR 72 (222)
T ss_pred CEEEEeeEEEecCC--CeEEeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCEEcccCChh
Confidence 48999999999421 57999999999 5899999999999999999999999997 88997310
Q ss_pred -------ccceecccccCCCchhHHHHhhC-------CCccccc--------------------cchHHHHHHHHHHHHH
Q 003528 78 -------TKGIWMARCAGIEPCTLIMDLEG-------TDGRERG--------------------EDDTAFEKQSALFALA 123 (813)
Q Consensus 78 -------~~g~~~~~~~~~e~~~~vld~~g-------~~~~e~~--------------------~~~~~~erQrv~iA~A 123 (813)
..++.++.. ...+...+.++.. ....+.. .....+|+||++||+|
T Consensus 73 ~~~~~~~~i~~~~q~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 151 (222)
T PRK10908 73 EVPFLRRQIGMIFQDH-HLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARA 151 (222)
T ss_pred HHHHHHhheEEEecCc-cccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHH
Confidence 011222221 1111122222221 1110000 0111239999999999
Q ss_pred HH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEE
Q 003528 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (813)
Q Consensus 124 La---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~ 194 (813)
++ ++|||||||++||+.. ...+.+.+.++.++ +.|+|++|||++.+...+++++++.+ |+++.
T Consensus 152 l~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~-G~i~~ 217 (222)
T PRK10908 152 VVNKPAVLLADEPTGNLDDAL------SEGILRLFEEFNRV-GVTVLMATHDIGLISRRSYRMLTLSD-GHLHG 217 (222)
T ss_pred HHcCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEcc
Confidence 99 9999999999999999 99999999998764 89999999999988766666655554 98864
No 119
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=5.4e-25 Score=233.95 Aligned_cols=183 Identities=13% Similarity=0.099 Sum_probs=131.0
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC-CCCCCeeee--------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREM-DAFKGRSQT-------- 77 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m-~p~sG~~q~-------- 77 (813)
+++|+++|+++.|++ ..+|+++||++ .+|++++|+|+|||||||||++|+|+.+... .|++|++.-
T Consensus 10 ~~~l~~~~l~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~ 84 (258)
T PRK14268 10 QPQIKVENLNLWYGE---KQALKNVSMQI--PKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP 84 (258)
T ss_pred ceeEEEeeeEEEeCC---eeeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccc
Confidence 568999999999975 67999999999 5899999999999999999999999986100 026786210
Q ss_pred ---------ccceecccccC-----CCchhHHHHhhCCCcc------------------------ccccchHHHHHHHHH
Q 003528 78 ---------TKGIWMARCAG-----IEPCTLIMDLEGTDGR------------------------ERGEDDTAFEKQSAL 119 (813)
Q Consensus 78 ---------~~g~~~~~~~~-----~e~~~~vld~~g~~~~------------------------e~~~~~~~~erQrv~ 119 (813)
..++.++.... .++..+.....+.... ........+|+||++
T Consensus 85 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ 164 (258)
T PRK14268 85 DVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLC 164 (258)
T ss_pred cchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHH
Confidence 01222222111 1122211111111100 001112234999999
Q ss_pred HHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEec
Q 003528 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (813)
Q Consensus 120 iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g 196 (813)
||+||+ ++|||||||++||+.. ...+.++++++. + +.|||+||||++.+...+++++++.+ |+|+..|
T Consensus 165 laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~l~-~-~~tiiivsH~~~~~~~~~d~i~~l~~-G~i~~~~ 235 (258)
T PRK14268 165 IARTLAVKPKIILFDEPTSALDPIS------TARIEDLIMNLK-K-DYTIVIVTHNMQQAARISDYTGFFLM-GELIEFG 235 (258)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHH------HHHHHHHHHHHh-h-CCEEEEEECCHHHHHHhCCEEEEEEC-CEEEEeC
Confidence 999999 9999999999999999 999999999985 3 78999999999988766666555554 9999998
Q ss_pred CcccccC
Q 003528 197 PKPQAHM 203 (813)
Q Consensus 197 ~~~e~~~ 203 (813)
++.+++.
T Consensus 236 ~~~~~~~ 242 (258)
T PRK14268 236 QTRQIFH 242 (258)
T ss_pred CHHHHhc
Confidence 8776543
No 120
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.92 E-value=3.1e-25 Score=237.06 Aligned_cols=182 Identities=13% Similarity=0.088 Sum_probs=131.8
Q ss_pred ccEEEEeeeEEeccc------cccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----
Q 003528 8 CSTQLIDGDGTFNVS------GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~------~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---- 77 (813)
+||+++|++++|+.. +...+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.-
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i--~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~ 76 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTL--REGQTLAIIGENGSGKSTLAKMLAGMIE----PTSGELLIDDHP 76 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEe--cCCCEEEEEcCCCCCHHHHHHHHhCCCC----CCCCEEEECCEE
Confidence 369999999999621 0146999999999 5899999999999999999999999997 88997310
Q ss_pred -----------ccceecccccC-CCchhHHHHh--------------------------hCCCcc---ccccchHHHHHH
Q 003528 78 -----------TKGIWMARCAG-IEPCTLIMDL--------------------------EGTDGR---ERGEDDTAFEKQ 116 (813)
Q Consensus 78 -----------~~g~~~~~~~~-~e~~~~vld~--------------------------~g~~~~---e~~~~~~~~erQ 116 (813)
..++.++.... ..+...+.++ .|+... ........+|+|
T Consensus 77 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~q 156 (267)
T PRK15112 77 LHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQ 156 (267)
T ss_pred CCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHH
Confidence 11222222110 1111111111 111100 001112234999
Q ss_pred HHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEE
Q 003528 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (813)
Q Consensus 117 rv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~ 193 (813)
|++||+|++ ++|||||||++||+.. ...+.+++.++.++.|.|||+|||+++.+...+++++++. +|+++
T Consensus 157 rv~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~-~G~i~ 229 (267)
T PRK15112 157 RLGLARALILRPKVIIADEALASLDMSM------RSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMH-QGEVV 229 (267)
T ss_pred HHHHHHHHHhCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEE-CCEEE
Confidence 999999999 9999999999999999 9999999999976558999999999998876666666555 49999
Q ss_pred EecCccccc
Q 003528 194 DSVPKPQAH 202 (813)
Q Consensus 194 ~~g~~~e~~ 202 (813)
..|++.++.
T Consensus 230 ~~~~~~~~~ 238 (267)
T PRK15112 230 ERGSTADVL 238 (267)
T ss_pred ecCCHHHHh
Confidence 888766544
No 121
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.92 E-value=4.8e-25 Score=229.02 Aligned_cols=172 Identities=12% Similarity=0.076 Sum_probs=128.1
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-----------c
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT-----------T 78 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~-----------~ 78 (813)
|+++|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..- .
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~~~~~~~~~~~~ 71 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTV--PKNSVYGLLGPNGAGKSTLLKMITGILR----PTSGEIIFDGHPWTRKDLHK 71 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCEecccccccc
Confidence 578999999975 67999999999 5899999999999999999999999987 88997321 1
Q ss_pred cceecccccCCCchhHHHHhh-------CCCccc----------------cccchHHHHHHHHHHHHHHH---hHhhhcc
Q 003528 79 KGIWMARCAGIEPCTLIMDLE-------GTDGRE----------------RGEDDTAFEKQSALFALAVS---DIVLINM 132 (813)
Q Consensus 79 ~g~~~~~~~~~e~~~~vld~~-------g~~~~e----------------~~~~~~~~erQrv~iA~ALa---dvLLLDE 132 (813)
.++.++... ..+...+.++. +..... .......+|+||++||+|++ ++||+||
T Consensus 72 ~~~~~q~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDE 150 (223)
T TIGR03740 72 IGSLIESPP-LYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDE 150 (223)
T ss_pred EEEEcCCCC-ccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 122332221 11111222221 111000 00011223999999999999 9999999
Q ss_pred CCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcc
Q 003528 133 WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (813)
Q Consensus 133 PtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~ 199 (813)
||++||+.. .+.+.+++.++.++ |.|||++|||++.+...+++++++.+ |++...|++.
T Consensus 151 P~~~LD~~~------~~~l~~~L~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~-g~i~~~~~~~ 209 (223)
T TIGR03740 151 PTNGLDPIG------IQELRELIRSFPEQ-GITVILSSHILSEVQQLADHIGIISE-GVLGYQGKIN 209 (223)
T ss_pred CccCCCHHH------HHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHhcCEEEEEeC-CEEEEecChh
Confidence 999999999 99999999998754 89999999999988766666666655 9999888754
No 122
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.8e-25 Score=237.47 Aligned_cols=179 Identities=15% Similarity=0.159 Sum_probs=132.9
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-----------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----------- 77 (813)
||+++|++++|++. ..+++++||++ .+|++++|+||||||||||+++|+|+.+ |.+|++.-
T Consensus 1 ~l~~~~l~~~~~~~--~~~l~~vsl~i--~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~----~~~G~i~~~g~~~~~~~~~ 72 (275)
T PRK13639 1 ILETRDLKYSYPDG--TEALKGINFKA--EKGEMVALLGPNGAGKSTLFLHFNGILK----PTSGEVLIKGEPIKYDKKS 72 (275)
T ss_pred CEEEEEEEEEeCCC--CeeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCccEEEECCEECccccch
Confidence 48999999999642 56999999999 5899999999999999999999999997 88897310
Q ss_pred ------ccceeccccc-CCCchhHHHHhhC-------CCcccc--------------------ccchHHHHHHHHHHHHH
Q 003528 78 ------TKGIWMARCA-GIEPCTLIMDLEG-------TDGRER--------------------GEDDTAFEKQSALFALA 123 (813)
Q Consensus 78 ------~~g~~~~~~~-~~e~~~~vld~~g-------~~~~e~--------------------~~~~~~~erQrv~iA~A 123 (813)
..++.++... ...+ ..+.++.. ....+. ......+|+||++||+|
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~lara 151 (275)
T PRK13639 73 LLEVRKTVGIVFQNPDDQLFA-PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGI 151 (275)
T ss_pred HHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 0122333211 0111 12222221 110000 00111239999999999
Q ss_pred HH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccc
Q 003528 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (813)
Q Consensus 124 La---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e 200 (813)
++ ++||+||||+|||+.. ...+++++.++.++ |.|||++|||++.+...+++++++.+ |+++..|++.+
T Consensus 152 l~~~p~llllDEPt~gLD~~~------~~~l~~~l~~l~~~-~~til~vtH~~~~~~~~~d~i~~l~~-G~i~~~g~~~~ 223 (275)
T PRK13639 152 LAMKPEIIVLDEPTSGLDPMG------ASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSD-GKIIKEGTPKE 223 (275)
T ss_pred HhcCCCEEEEeCCCcCCCHHH------HHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEEC-CEEEEeCCHHH
Confidence 99 9999999999999999 99999999999764 89999999999988766666666655 99999998777
Q ss_pred ccCC
Q 003528 201 AHME 204 (813)
Q Consensus 201 ~~~~ 204 (813)
++..
T Consensus 224 ~~~~ 227 (275)
T PRK13639 224 VFSD 227 (275)
T ss_pred HhcC
Confidence 6543
No 123
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5.6e-25 Score=235.61 Aligned_cols=183 Identities=16% Similarity=0.120 Sum_probs=132.1
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ---------- 76 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q---------- 76 (813)
.++|++.|+++.|+++ ...+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.
T Consensus 5 ~~~l~~~nl~~~~~~~-~~~il~~isl~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----p~~G~I~~~g~~i~~~~ 77 (271)
T PRK13632 5 SVMIKVENVSFSYPNS-ENNALKNVSFEI--NEGEYVAILGHNGSGKSTISKILTGLLK----PQSGEIKIDGITISKEN 77 (271)
T ss_pred ceEEEEEeEEEEcCCC-CccceeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCCC----CCCceEEECCEecCcCC
Confidence 3579999999999631 257999999999 5899999999999999999999999997 8889731
Q ss_pred -----eccceecccccCCCchhHHHHhhC-------CCccc--------------------cccchHHHHHHHHHHHHHH
Q 003528 77 -----TTKGIWMARCAGIEPCTLIMDLEG-------TDGRE--------------------RGEDDTAFEKQSALFALAV 124 (813)
Q Consensus 77 -----~~~g~~~~~~~~~e~~~~vld~~g-------~~~~e--------------------~~~~~~~~erQrv~iA~AL 124 (813)
...++.++..........+.++.. ....+ .......+|+||++||+||
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral 157 (271)
T PRK13632 78 LKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVL 157 (271)
T ss_pred HHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHH
Confidence 011222222110111122333221 11100 0011122399999999999
Q ss_pred H---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccc
Q 003528 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (813)
Q Consensus 125 a---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~ 201 (813)
+ ++|||||||++||+.. ...+++++.++.++.+.|+|++||+++.+. .+++++++ ++|++...|++.++
T Consensus 158 ~~~p~lllLDEP~~gLD~~~------~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l-~~G~i~~~g~~~~~ 229 (271)
T PRK13632 158 ALNPEIIIFDESTSMLDPKG------KREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVF-SEGKLIAQGKPKEI 229 (271)
T ss_pred HcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEE-ECCEEEEecCHHHH
Confidence 9 9999999999999999 999999999987654589999999998876 45555554 55999988877665
Q ss_pred cCC
Q 003528 202 HME 204 (813)
Q Consensus 202 ~~~ 204 (813)
...
T Consensus 230 ~~~ 232 (271)
T PRK13632 230 LNN 232 (271)
T ss_pred hcC
Confidence 543
No 124
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.92 E-value=6.6e-25 Score=228.58 Aligned_cols=173 Identities=16% Similarity=0.140 Sum_probs=124.4
Q ss_pred CccEEEEeeeEEeccccc-cceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee--------
Q 003528 7 CCSTQLIDGDGTFNVSGI-EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT-------- 77 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~-~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~-------- 77 (813)
.++|+++|++++|++... ..+++++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i--~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~----p~~G~i~~~g~~~~~~ 77 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSILTGVELVV--KRGETIALIGESGSGKSTLLAILAGLDD----GSSGEVSLVGQPLHQM 77 (228)
T ss_pred CceEEEeeeEEEccCCCcceEEEeccEEEE--cCCCEEEEECCCCCCHHHHHHHHHcCCC----CCCeeEEECCEEcccC
Confidence 357999999999965211 25899999999 5899999999999999999999999997 88897310
Q ss_pred -----------ccceecccccCCCchhHHHHhhC-------CCcccc--------------------ccchHHHHHHHHH
Q 003528 78 -----------TKGIWMARCAGIEPCTLIMDLEG-------TDGRER--------------------GEDDTAFEKQSAL 119 (813)
Q Consensus 78 -----------~~g~~~~~~~~~e~~~~vld~~g-------~~~~e~--------------------~~~~~~~erQrv~ 119 (813)
..+++++.. ...+...+.++.. ....+. ......+|+||++
T Consensus 78 ~~~~~~~~~~~~i~~~~q~~-~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~ 156 (228)
T PRK10584 78 DEEARAKLRAKHVGFVFQSF-MLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVA 156 (228)
T ss_pred CHHHHHHHHhheEEEEEccc-ccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHH
Confidence 012222221 1111122222221 110000 0011123999999
Q ss_pred HHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEE
Q 003528 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (813)
Q Consensus 120 iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~ 194 (813)
||+||+ ++|||||||++||+.. ...+.+.+.++.++.|.|||++|||++.+. .+++++++ ++|++++
T Consensus 157 la~al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~i~~l-~~g~i~~ 226 (228)
T PRK10584 157 LARAFNGRPDVLFADEPTGNLDRQT------GDKIADLLFSLNREHGTTLILVTHDLQLAA-RCDRRLRL-VNGQLQE 226 (228)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEE-ECCEEEe
Confidence 999999 9999999999999999 999999999987655899999999998765 35554444 5599864
No 125
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.92 E-value=4.7e-25 Score=229.54 Aligned_cols=171 Identities=17% Similarity=0.166 Sum_probs=127.9
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCC-----CCCCCCCCCeee----e---
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN-----FREMDAFKGRSQ----T--- 77 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~-----~~~m~p~sG~~q----~--- 77 (813)
|+++|++++|++ ..+|+++||++ .+|++++|+||||||||||+++|+|+. + |.+|+.. .
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~----~~~G~i~~~g~~~~~ 71 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDI--PKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA----PDEGEVLLDGKDIYD 71 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHHhhcccccCC----CCCeEEEECCEEhhh
Confidence 578999999976 57999999999 589999999999999999999999998 7 7888721 0
Q ss_pred ----------ccceecccccCCCchhHHHHhh--------------------------CCCcc--cc--ccchHHHHHHH
Q 003528 78 ----------TKGIWMARCAGIEPCTLIMDLE--------------------------GTDGR--ER--GEDDTAFEKQS 117 (813)
Q Consensus 78 ----------~~g~~~~~~~~~e~~~~vld~~--------------------------g~~~~--e~--~~~~~~~erQr 117 (813)
..+++++... .. ...+.++. |+... .. ......+|+||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~-~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qr 149 (227)
T cd03260 72 LDVDVLELRRRVGMVFQKPN-PF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQR 149 (227)
T ss_pred cchHHHHHHhhEEEEecCch-hc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHH
Confidence 0122222211 11 11222211 22110 01 12233459999
Q ss_pred HHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEE
Q 003528 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (813)
Q Consensus 118 v~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~ 194 (813)
++||+|++ ++||+||||++||+.. ...+++.+.++.++ .|||++|||++.+...+++++++.+ |+++.
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~--~tii~~sH~~~~~~~~~d~i~~l~~-G~i~~ 220 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPIS------TAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLLN-GRLVE 220 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHhhC--cEEEEEeccHHHHHHhCCEEEEEeC-CEEEE
Confidence 99999999 9999999999999999 99999999999754 8999999999987766666666555 99998
Q ss_pred ecCccc
Q 003528 195 SVPKPQ 200 (813)
Q Consensus 195 ~g~~~e 200 (813)
.|++.+
T Consensus 221 ~g~~~~ 226 (227)
T cd03260 221 FGPTEQ 226 (227)
T ss_pred ecCccc
Confidence 887654
No 126
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.92 E-value=6.5e-25 Score=254.95 Aligned_cols=180 Identities=11% Similarity=0.021 Sum_probs=136.2
Q ss_pred CCccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee--------
Q 003528 6 ECCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT-------- 77 (813)
Q Consensus 6 ~~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~-------- 77 (813)
++++|+++|++++|++ +.+|+++||++ .+|++++|+||||||||||||+|+|+.+ |++|++.-
T Consensus 8 ~~~~l~~~~l~~~~~~---~~il~~vsl~i--~~Ge~~~liG~NGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~~~~~ 78 (510)
T PRK15439 8 APPLLCARSISKQYSG---VEVLKGIDFTL--HAGEVHALLGGNGAGKSTLMKIIAGIVP----PDSGTLEIGGNPCARL 78 (510)
T ss_pred CCceEEEEeEEEEeCC---ceeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCEECCCC
Confidence 4457999999999976 67999999999 5899999999999999999999999997 88898321
Q ss_pred --------ccceecccccCCCchhHHHHhhC---------------------CCcc--ccccchHHHHHHHHHHHHHHH-
Q 003528 78 --------TKGIWMARCAGIEPCTLIMDLEG---------------------TDGR--ERGEDDTAFEKQSALFALAVS- 125 (813)
Q Consensus 78 --------~~g~~~~~~~~~e~~~~vld~~g---------------------~~~~--e~~~~~~~~erQrv~iA~ALa- 125 (813)
..+++++.. ...+...+.+++. +... ........+|||||+||+||+
T Consensus 79 ~~~~~~~~~i~~v~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 79 TPAKAHQLGIYLVPQEP-LLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMR 157 (510)
T ss_pred CHHHHHhCCEEEEeccC-ccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHc
Confidence 012223221 1222233333322 1100 001112234999999999999
Q ss_pred --hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccccC
Q 003528 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (813)
Q Consensus 126 --dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~~ 203 (813)
++|||||||++||+.. ...+.++++++.++ |.|||+||||++.+...+++++++.+ |+|+..|++.+...
T Consensus 158 ~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~i~~l~~-G~i~~~g~~~~~~~ 229 (510)
T PRK15439 158 DSRILILDEPTASLTPAE------TERLFSRIRELLAQ-GVGIVFISHKLPEIRQLADRISVMRD-GTIALSGKTADLST 229 (510)
T ss_pred CCCEEEEECCCCCCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEecChHHcCH
Confidence 9999999999999999 99999999999765 89999999999988766666665555 99999888776543
No 127
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.92 E-value=4.1e-25 Score=234.48 Aligned_cols=184 Identities=14% Similarity=0.122 Sum_probs=134.8
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee------------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------------ 77 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~------------ 77 (813)
|+++|+++.|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~ 72 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTA--PPGSLTGLLGPNGSGKSTLLRLLAGALR----PDAGTVDLAGVDLHGLSRRA 72 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEE--cCCcEEEEECCCCCCHHHHHHHHcCCCC----CCCCEEEECCEEcccCCHHH
Confidence 689999999976 67999999999 5899999999999999999999999997 88897210
Q ss_pred ---ccceecccccCCCchhHHHHhhCCC-----------ccccccc--------------------hHHHHHHHHHHHHH
Q 003528 78 ---TKGIWMARCAGIEPCTLIMDLEGTD-----------GRERGED--------------------DTAFEKQSALFALA 123 (813)
Q Consensus 78 ---~~g~~~~~~~~~e~~~~vld~~g~~-----------~~e~~~~--------------------~~~~erQrv~iA~A 123 (813)
..+++.+.. .......+.++.... ..+.... ...+|+||++||+|
T Consensus 73 ~~~~i~~~~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 151 (256)
T TIGR03873 73 RARRVALVEQDS-DTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARA 151 (256)
T ss_pred HhhheEEecccC-ccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 112222221 111222333333110 0000000 01129999999999
Q ss_pred HH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccc
Q 003528 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (813)
Q Consensus 124 La---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e 200 (813)
++ +++||||||++||+.. ...+.+++.++.++ |.|||++|||++.+...+++++++.+ |+++..|+..+
T Consensus 152 l~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~-G~i~~~g~~~~ 223 (256)
T TIGR03873 152 LAQEPKLLLLDEPTNHLDVRA------QLETLALVRELAAT-GVTVVAALHDLNLAASYCDHVVVLDG-GRVVAAGPPRE 223 (256)
T ss_pred HhcCCCEEEEcCccccCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeC-CCEEEecCHHH
Confidence 99 9999999999999999 99999999999754 89999999999988766666655555 99999988766
Q ss_pred ccCCccchhhh
Q 003528 201 AHMETPLSEFF 211 (813)
Q Consensus 201 ~~~~~~l~d~f 211 (813)
+.....+...|
T Consensus 224 ~~~~~~~~~~~ 234 (256)
T TIGR03873 224 VLTPALIRAVY 234 (256)
T ss_pred hhCHHHHHHHh
Confidence 55433333333
No 128
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.92 E-value=7.6e-25 Score=232.56 Aligned_cols=176 Identities=19% Similarity=0.192 Sum_probs=131.6
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----e-------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----T------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----~------- 77 (813)
+|+++|+++.|++ +.+|+++||++ .+|++++|+|+|||||||||++|+|+.+ |++|+.. .
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~ 75 (257)
T PRK10619 5 KLNVIDLHKRYGE---HEVLKGVSLQA--NAGDVISIIGSSGSGKSTFLRCINFLEK----PSEGSIVVNGQTINLVRDK 75 (257)
T ss_pred cEEEeeeEEEECC---EEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEECCEEccccccc
Confidence 5999999999976 67999999999 5899999999999999999999999997 8889721 0
Q ss_pred -----------------ccceecccccCCCchhHHHHhh--------------------------CCCcc---ccccchH
Q 003528 78 -----------------TKGIWMARCAGIEPCTLIMDLE--------------------------GTDGR---ERGEDDT 111 (813)
Q Consensus 78 -----------------~~g~~~~~~~~~e~~~~vld~~--------------------------g~~~~---e~~~~~~ 111 (813)
..+++.+.. ...+...+.++. |+... .......
T Consensus 76 ~~~~~~~~~~~~~~~~~~i~~v~q~~-~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 154 (257)
T PRK10619 76 DGQLKVADKNQLRLLRTRLTMVFQHF-NLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLS 154 (257)
T ss_pred ccccccccchHHHHHhhceEEEecCc-ccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCC
Confidence 012222211 111112222222 11100 0011122
Q ss_pred HHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeec
Q 003528 112 AFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (813)
Q Consensus 112 ~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~ 188 (813)
.+|+||++||+||+ +++||||||++||+.. .+.+.+++.++.+. |.|||+||||++.+...+++++++.+
T Consensus 155 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tiiivsH~~~~~~~~~d~i~~l~~ 227 (257)
T PRK10619 155 GGQQQRVSIARALAMEPEVLLFDEPTSALDPEL------VGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQ 227 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 34999999999999 9999999999999999 99999999999764 89999999999988766666665554
Q ss_pred CCeEEEecCccccc
Q 003528 189 IQKIWDSVPKPQAH 202 (813)
Q Consensus 189 ~GkI~~~g~~~e~~ 202 (813)
|+++..|++.++.
T Consensus 228 -G~i~~~~~~~~~~ 240 (257)
T PRK10619 228 -GKIEEEGAPEQLF 240 (257)
T ss_pred -CEEEEeCCHHHhh
Confidence 9999988776654
No 129
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.92 E-value=3.9e-25 Score=251.62 Aligned_cols=188 Identities=15% Similarity=0.144 Sum_probs=145.7
Q ss_pred ccEEEEeeeEEecccc-ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----------
Q 003528 8 CSTQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ---------- 76 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~-~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q---------- 76 (813)
++|+++|+++.|...+ ...++++|||++ .+||++||+|.+||||||+.++|.|+++......+|+..
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v--~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~ 81 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEV--EPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLS 81 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEe--cCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCC
Confidence 4899999999997532 236999999999 589999999999999999999999999843223467721
Q ss_pred ---------eccceecccccC-CCchhHHH--------------------------HhhCCCccccc----cchHHHHHH
Q 003528 77 ---------TTKGIWMARCAG-IEPCTLIM--------------------------DLEGTDGRERG----EDDTAFEKQ 116 (813)
Q Consensus 77 ---------~~~g~~~~~~~~-~e~~~~vl--------------------------d~~g~~~~e~~----~~~~~~erQ 116 (813)
...++++|.... +.+...+. +..|++..++. .....+|||
T Consensus 82 ~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQ 161 (539)
T COG1123 82 EREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQ 161 (539)
T ss_pred HHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHH
Confidence 122345555322 33323222 22233333222 112234999
Q ss_pred HHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEE
Q 003528 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (813)
Q Consensus 117 rv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~ 193 (813)
||.||+||+ ++||+||||++||+.. +.+|+++|+++.++.|+++||||||++.+...++++++|.+ |+++
T Consensus 162 Rv~iAmALa~~P~LLIaDEPTTaLDvt~------q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~-G~iV 234 (539)
T COG1123 162 RVMIAMALALKPKLLIADEPTTALDVTT------QAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYK-GEIV 234 (539)
T ss_pred HHHHHHHHhCCCCEEEECCCccccCHHH------HHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEEC-CEEE
Confidence 999999999 9999999999999999 99999999999988999999999999999988887777777 9999
Q ss_pred EecCcccccCC
Q 003528 194 DSVPKPQAHME 204 (813)
Q Consensus 194 ~~g~~~e~~~~ 204 (813)
+.|++.+++.+
T Consensus 235 E~G~~~~i~~~ 245 (539)
T COG1123 235 ETGPTEEILSN 245 (539)
T ss_pred EecCHHHHHhc
Confidence 99999988754
No 130
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=5.3e-25 Score=226.68 Aligned_cols=167 Identities=14% Similarity=0.108 Sum_probs=122.3
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee------------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------------ 77 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~------------ 77 (813)
|+++|++++|++ ..+++++||++. +| +++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~--~g-~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~ 70 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLG--PG-MYGLLGPNGAGKTTLMRILATLTP----PSSGTIRIDGQDVLKQPQKL 70 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEc--CC-cEEEECCCCCCHHHHHHHHhCCCC----CCccEEEECCCccccchHHH
Confidence 578999999976 579999999994 68 999999999999999999999997 88898321
Q ss_pred --ccceecccccCCCchhHHHHhh-------CCCccccc--------------------cchHHHHHHHHHHHHHHH---
Q 003528 78 --TKGIWMARCAGIEPCTLIMDLE-------GTDGRERG--------------------EDDTAFEKQSALFALAVS--- 125 (813)
Q Consensus 78 --~~g~~~~~~~~~e~~~~vld~~-------g~~~~e~~--------------------~~~~~~erQrv~iA~ALa--- 125 (813)
..++.++.. ...+...+.++. +....+.. .....+|+||++||+|++
T Consensus 71 ~~~i~~~~q~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 149 (211)
T cd03264 71 RRRIGYLPQEF-GVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDP 149 (211)
T ss_pred HhheEEecCCC-cccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 112222222 111112222222 11110000 001123999999999999
Q ss_pred hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEec
Q 003528 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (813)
Q Consensus 126 dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g 196 (813)
++||+||||++||+.. ...+.+.+.++.+ +.|+|+||||++.+...+++++++. +|+++..|
T Consensus 150 ~llllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~-~g~i~~~g 211 (211)
T cd03264 150 SILIVDEPTAGLDPEE------RIRFRNLLSELGE--DRIVILSTHIVEDVESLCNQVAVLN-KGKLVFEG 211 (211)
T ss_pred CEEEEcCCcccCCHHH------HHHHHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEEEEEE-CCEEEecC
Confidence 9999999999999999 9999999999875 4899999999998876566555554 59987653
No 131
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=4.8e-25 Score=231.93 Aligned_cols=176 Identities=14% Similarity=0.111 Sum_probs=128.8
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee-------------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------- 76 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------- 76 (813)
|+++|++++|++. ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~ 72 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEI--AKGEFLVLIGPSGSGKTTTMKMINRLIE----PTSGEIFIDGEDIREQDPVE 72 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEE--CCCCEEEEECCCCCCHHHHHHHHhcCCC----CCCceEEECCeEcCcCChHH
Confidence 4789999999752 46999999999 5899999999999999999999999997 8889731
Q ss_pred --eccceecccccCCCchhHHHHhh-------------------------CCCc----cccccchHHHHHHHHHHHHHHH
Q 003528 77 --TTKGIWMARCAGIEPCTLIMDLE-------------------------GTDG----RERGEDDTAFEKQSALFALAVS 125 (813)
Q Consensus 77 --~~~g~~~~~~~~~e~~~~vld~~-------------------------g~~~----~e~~~~~~~~erQrv~iA~ALa 125 (813)
...++.++.. ...+...+.++. |+.. .........+|+||++||+|++
T Consensus 73 ~~~~i~~~~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 73 LRRKIGYVIQQI-GLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred hhcceEEEccCc-cccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 0112222221 111111121211 1111 0001112234999999999999
Q ss_pred ---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccc
Q 003528 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (813)
Q Consensus 126 ---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~ 201 (813)
++|||||||++||+.. ...+.+.+.++.++.|+|||++||+++.+...+++++++. +|+++..+++.+.
T Consensus 152 ~~p~llllDEPt~~LD~~~------~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~-~G~i~~~~~~~~~ 223 (242)
T cd03295 152 ADPPLLLMDEPFGALDPIT------RDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMK-NGEIVQVGTPDEI 223 (242)
T ss_pred cCCCEEEecCCcccCCHHH------HHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEE-CCEEEEecCHHHH
Confidence 9999999999999999 9999999999876558999999999988766566555555 4999988876554
No 132
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=4.4e-25 Score=238.56 Aligned_cols=184 Identities=13% Similarity=0.069 Sum_probs=132.1
Q ss_pred ccEEEEeeeEEecccc--ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee--------
Q 003528 8 CSTQLIDGDGTFNVSG--IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT-------- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~--~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~-------- 77 (813)
..|+++|++++|++.. ...+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~i~~~ 78 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTF--KKNKVTCVIGTTGSGKSTMIQLTNGLII----SETGQTIVGDYAIPAN 78 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEE--eCCCEEEEECCCCCCHHHHHHHHhcCCC----CCCceEEECCEEcccc
Confidence 3589999999996521 024999999999 5899999999999999999999999997 88887310
Q ss_pred ------------ccceecccccCCCchhHHHHhh-------CCCccc---------------------cccchHHHHHHH
Q 003528 78 ------------TKGIWMARCAGIEPCTLIMDLE-------GTDGRE---------------------RGEDDTAFEKQS 117 (813)
Q Consensus 78 ------------~~g~~~~~~~~~e~~~~vld~~-------g~~~~e---------------------~~~~~~~~erQr 117 (813)
..++.++..........+.+++ +....+ .......+|+||
T Consensus 79 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qr 158 (289)
T PRK13645 79 LKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRR 158 (289)
T ss_pred ccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHH
Confidence 0122222210000001222221 111000 001112249999
Q ss_pred HHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEE
Q 003528 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (813)
Q Consensus 118 v~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~ 194 (813)
++||+|++ ++|||||||++||+.. ...+++++.++.++.|+|||+||||++.+...+++++++.+ |+++.
T Consensus 159 v~laral~~~p~lLlLDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~-G~i~~ 231 (289)
T PRK13645 159 VALAGIIAMDGNTLVLDEPTGGLDPKG------EEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHE-GKVIS 231 (289)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEEC-CEEEE
Confidence 99999999 9999999999999999 99999999998765589999999999987766666655555 99999
Q ss_pred ecCcccccCC
Q 003528 195 SVPKPQAHME 204 (813)
Q Consensus 195 ~g~~~e~~~~ 204 (813)
.|++.+++..
T Consensus 232 ~g~~~~~~~~ 241 (289)
T PRK13645 232 IGSPFEIFSN 241 (289)
T ss_pred eCCHHHHhcC
Confidence 8887665543
No 133
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=7.6e-25 Score=220.24 Aligned_cols=158 Identities=19% Similarity=0.210 Sum_probs=120.4
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccce--------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI-------- 81 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~-------- 81 (813)
|+++|++++|++ ..+++++||++ .+|++++|+||||||||||+++|+|+.+ |++|+..- .|.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i--~~G~~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~-~g~~~~~~~~~ 70 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNI--EAGEIVALLGPSGSGKSTLLRCIAGLEE----PDSGSILI-DGEDLTDLEDE 70 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEE-CCEEccccchh
Confidence 478999999975 67999999999 5899999999999999999999999997 88898421 111
Q ss_pred ---------ecccccCCCchhHHHHhhCCCccccccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHH
Q 003528 82 ---------WMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLK 149 (813)
Q Consensus 82 ---------~~~~~~~~e~~~~vld~~g~~~~e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~ 149 (813)
+..+.....+...+.++.... ...+|+||++||+|++ +++|+||||++||+.+ +.
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~-------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~------~~ 137 (178)
T cd03229 71 LPPLRRRIGMVFQDFALFPHLTVLENIALG-------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPIT------RR 137 (178)
T ss_pred HHHHhhcEEEEecCCccCCCCCHHHheeec-------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHH------HH
Confidence 111111111111222222211 4556999999999999 9999999999999999 99
Q ss_pred HHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCe
Q 003528 150 TVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (813)
Q Consensus 150 ~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~Gk 191 (813)
.+++++.++.++.|.|+|++|||++.+...+++++++.+ |+
T Consensus 138 ~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~-g~ 178 (178)
T cd03229 138 EVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRD-GK 178 (178)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeC-CC
Confidence 999999998765479999999999888755665555544 53
No 134
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=8.4e-25 Score=228.68 Aligned_cols=182 Identities=15% Similarity=0.127 Sum_probs=132.3
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------ 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------ 76 (813)
||+++|++++|++ .. .++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..
T Consensus 1 ~l~~~~l~~~~~~---~~--~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~ 69 (232)
T PRK10771 1 MLKLTDITWLYHH---LP--MRFDLTV--ERGERVAILGPSGAGKSTLLNLIAGFLT----PASGSLTLNGQDHTTTPPS 69 (232)
T ss_pred CeEEEEEEEEECC---cc--ceeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCeecCcCChh
Confidence 4899999999964 22 3899999 5899999999999999999999999997 8889731
Q ss_pred -eccceecccccCCCchhHHHHhhCCCc------c-c---ccc-----------------chHHHHHHHHHHHHHHH---
Q 003528 77 -TTKGIWMARCAGIEPCTLIMDLEGTDG------R-E---RGE-----------------DDTAFEKQSALFALAVS--- 125 (813)
Q Consensus 77 -~~~g~~~~~~~~~e~~~~vld~~g~~~------~-e---~~~-----------------~~~~~erQrv~iA~ALa--- 125 (813)
...++.++.. ...+...+.++..... . . +.. ....+|+||++||+|++
T Consensus 70 ~~~i~~~~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 148 (232)
T PRK10771 70 RRPVSMLFQEN-NLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQ 148 (232)
T ss_pred hccEEEEeccc-ccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 0112223322 2222223344332110 0 0 000 01112999999999999
Q ss_pred hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccccCCc
Q 003528 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMET 205 (813)
Q Consensus 126 dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~~~~ 205 (813)
+++||||||++||+.. .+.+.+++.++.++.|.|+|++|||++.+...+++++++.+ |+++..|++.++..+.
T Consensus 149 ~lllLDEP~~gLD~~~------~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~-g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 149 PILLLDEPFSALDPAL------RQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVAD-GRIAWDGPTDELLSGK 221 (232)
T ss_pred CEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC-CEEEEeCCHHHHHhCh
Confidence 9999999999999999 99999999998765589999999999988765665555554 9999998877665544
Q ss_pred cchh
Q 003528 206 PLSE 209 (813)
Q Consensus 206 ~l~d 209 (813)
.+.+
T Consensus 222 ~~~~ 225 (232)
T PRK10771 222 ASAS 225 (232)
T ss_pred hHHH
Confidence 3333
No 135
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=4.8e-25 Score=237.03 Aligned_cols=181 Identities=13% Similarity=0.092 Sum_probs=131.6
Q ss_pred cEEEEeeeEEecccc--ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee---------
Q 003528 9 STQLIDGDGTFNVSG--IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT--------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~--~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~--------- 77 (813)
+|+++|++++|++.. ...+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.-
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~----p~~G~i~~~g~~i~~~~ 75 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTI--EDGSYTAFIGHTGSGKSTIMQLLNGLHV----PTQGSVRVDDTLITSTS 75 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCEEccccc
Confidence 589999999996421 136999999999 5899999999999999999999999997 88897310
Q ss_pred ----------ccceeccccc-C------CCchhHHHHh------------------hCCCc---cccccchHHHHHHHHH
Q 003528 78 ----------TKGIWMARCA-G------IEPCTLIMDL------------------EGTDG---RERGEDDTAFEKQSAL 119 (813)
Q Consensus 78 ----------~~g~~~~~~~-~------~e~~~~vld~------------------~g~~~---~e~~~~~~~~erQrv~ 119 (813)
..++.++... . .+++.+.... .|+.. .........+||||++
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 76 KNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred cccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence 0122232210 1 1111111111 11110 0011112234999999
Q ss_pred HHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEec
Q 003528 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (813)
Q Consensus 120 iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g 196 (813)
||+|++ ++|||||||++||+.. ...+.+.+.++.++ |.|||+||||++.+...+++++++.+ |+++..|
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~-G~i~~~g 227 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKG------RKELMTLFKKLHQS-GMTIVLVTHLMDDVANYADFVYVLEK-GKLVLSG 227 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeccHHHHHHhCCEEEEEEC-CEEEEeC
Confidence 999999 9999999999999999 99999999998764 89999999999988766666555555 9999888
Q ss_pred CcccccC
Q 003528 197 PKPQAHM 203 (813)
Q Consensus 197 ~~~e~~~ 203 (813)
++.+++.
T Consensus 228 ~~~~~~~ 234 (280)
T PRK13649 228 KPKDIFQ 234 (280)
T ss_pred CHHHHhc
Confidence 8766554
No 136
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.92 E-value=5.7e-25 Score=226.59 Aligned_cols=166 Identities=17% Similarity=0.230 Sum_probs=120.2
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee------------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------------ 77 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~------------ 77 (813)
|+++|+++.|++. +.+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i--~~G~~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~i~~~~~~~ 72 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISI--SAGEFVFLVGPSGAGKSTLLKLIYKEEL----PTSGTIRVNGQDVSDLRGRA 72 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCCC----CCceEEEECCEEcccCCHHH
Confidence 4789999999642 57999999999 5899999999999999999999999987 88897310
Q ss_pred ------ccceecccccCCCchhHHHHhh-------CCCcccc--------------------ccchHHHHHHHHHHHHHH
Q 003528 78 ------TKGIWMARCAGIEPCTLIMDLE-------GTDGRER--------------------GEDDTAFEKQSALFALAV 124 (813)
Q Consensus 78 ------~~g~~~~~~~~~e~~~~vld~~-------g~~~~e~--------------------~~~~~~~erQrv~iA~AL 124 (813)
..++..+.. ...+...+.++. +....+. ......+|+||++||+|+
T Consensus 73 ~~~~~~~i~~v~q~~-~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 151 (214)
T cd03292 73 IPYLRRKIGVVFQDF-RLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAI 151 (214)
T ss_pred HHHHHHheEEEecCc-hhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence 011222221 111111222221 1110000 001112399999999999
Q ss_pred H---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeE
Q 003528 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (813)
Q Consensus 125 a---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI 192 (813)
+ +++||||||++||+.. ...+.+.+.++.++ |.|+|+||||++.+...+++++++.+ |++
T Consensus 152 ~~~p~llllDEPt~~LD~~~------~~~~~~~l~~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~-G~~ 214 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDT------TWEIMNLLKKINKA-GTTVVVATHAKELVDTTRHRVIALER-GKL 214 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeC-CcC
Confidence 9 9999999999999999 99999999998654 89999999999888765665555544 764
No 137
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=6.6e-25 Score=243.64 Aligned_cols=178 Identities=15% Similarity=0.126 Sum_probs=133.3
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-----------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----------- 77 (813)
||++ |++++|++ .. + ++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 1 ~l~~-~l~k~~~~---~~-~-~vsl~i--~~Ge~~~l~G~nGsGKSTLl~~iaGl~~----p~~G~I~~~g~~~~~~~~~ 68 (352)
T PRK11144 1 MLEL-NFKQQLGD---LC-L-TVNLTL--PAQGITAIFGRSGAGKTSLINAISGLTR----PQKGRIVLNGRVLFDAEKG 68 (352)
T ss_pred CeEE-EEEEEeCC---EE-E-EEEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCEEccccccc
Confidence 4788 99999975 32 3 899999 5899999999999999999999999997 88887320
Q ss_pred --------ccceecccccCCCchhHHHHhhCCCcc---------------------ccccchHHHHHHHHHHHHHHH---
Q 003528 78 --------TKGIWMARCAGIEPCTLIMDLEGTDGR---------------------ERGEDDTAFEKQSALFALAVS--- 125 (813)
Q Consensus 78 --------~~g~~~~~~~~~e~~~~vld~~g~~~~---------------------e~~~~~~~~erQrv~iA~ALa--- 125 (813)
..+++++.. ...+...+.++...... ........+||||++||+||+
T Consensus 69 ~~~~~~~~~i~~v~q~~-~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p 147 (352)
T PRK11144 69 ICLPPEKRRIGYVFQDA-RLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAP 147 (352)
T ss_pred cccchhhCCEEEEcCCc-ccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 012222221 22223334443321100 011112234999999999999
Q ss_pred hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccccCCc
Q 003528 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMET 205 (813)
Q Consensus 126 dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~~~~ 205 (813)
++|||||||++||+.. +..+.+.++++.++.|+|+|+||||++++...+++++++.+ |+++..|++.+++.+.
T Consensus 148 ~llLLDEPts~LD~~~------~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~-G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 148 ELLLMDEPLASLDLPR------KRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQ-GKVKAFGPLEEVWASS 220 (352)
T ss_pred CEEEEcCCcccCCHHH------HHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeC-CEEEEecCHHHHHhCc
Confidence 9999999999999999 99999999999876689999999999988766666666655 9999999988887654
Q ss_pred c
Q 003528 206 P 206 (813)
Q Consensus 206 ~ 206 (813)
.
T Consensus 221 ~ 221 (352)
T PRK11144 221 A 221 (352)
T ss_pred c
Confidence 4
No 138
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=6.7e-25 Score=236.45 Aligned_cols=181 Identities=13% Similarity=0.079 Sum_probs=132.0
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCC---Ceee---------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFK---GRSQ--------- 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~s---G~~q--------- 76 (813)
+|+++|+++.|++. ...+++++||++ .+|++++|+||||||||||+++|+|+.. |++ |++.
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i--~~Ge~~~I~G~nGaGKSTLl~~l~G~~~----p~~g~~G~i~i~g~~~~~~ 77 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSI--PRGSWTALIGHNGSGKSTISKLINGLLL----PDDNPNSKITVDGITLTAK 77 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEE--cCCCEEEEECCCCCcHHHHHHHHhcccC----CCCCCCcEEEECCEECCcC
Confidence 69999999999642 146999999999 5899999999999999999999999997 766 6521
Q ss_pred ------eccceecccccCCCchhHHHHhhCC-------Ccccc--------------------ccchHHHHHHHHHHHHH
Q 003528 77 ------TTKGIWMARCAGIEPCTLIMDLEGT-------DGRER--------------------GEDDTAFEKQSALFALA 123 (813)
Q Consensus 77 ------~~~g~~~~~~~~~e~~~~vld~~g~-------~~~e~--------------------~~~~~~~erQrv~iA~A 123 (813)
...+++++..........+.+++.. ...+. ......+|+||++||+|
T Consensus 78 ~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~lara 157 (282)
T PRK13640 78 TVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGI 157 (282)
T ss_pred CHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 1123333322111111223333211 11000 00111239999999999
Q ss_pred HH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccc
Q 003528 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (813)
Q Consensus 124 La---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e 200 (813)
++ ++||+||||+|||+.. ...+.+.+.++.++.|+|||++||+++.+. .+++++++ ++|+++..|++.+
T Consensus 158 l~~~P~llllDEPt~gLD~~~------~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l-~~G~i~~~g~~~~ 229 (282)
T PRK13640 158 LAVEPKIIILDESTSMLDPAG------KEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVL-DDGKLLAQGSPVE 229 (282)
T ss_pred HHcCCCEEEEECCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEE-ECCEEEEeCCHHH
Confidence 99 9999999999999999 999999999997656899999999998875 45555544 5599999998777
Q ss_pred ccCC
Q 003528 201 AHME 204 (813)
Q Consensus 201 ~~~~ 204 (813)
++..
T Consensus 230 ~~~~ 233 (282)
T PRK13640 230 IFSK 233 (282)
T ss_pred HhcC
Confidence 6554
No 139
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.8e-25 Score=237.74 Aligned_cols=175 Identities=15% Similarity=0.105 Sum_probs=128.1
Q ss_pred EEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-------------
Q 003528 11 QLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------------- 77 (813)
Q Consensus 11 el~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~------------- 77 (813)
.+.|+++.|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~----p~~G~i~i~g~~~~~~~~~~~ 96 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDV--REGEIFVIMGLSGSGKSTLLRCINRLIE----PTSGKVLIDGQDIAAMSRKEL 96 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCCC----CCCeEEEECCEEccccChhhh
Confidence 46677888865 67899999999 5899999999999999999999999997 88887210
Q ss_pred ------ccceecccccCCCchhHHHHhh-------CCCccc--------------------cccchHHHHHHHHHHHHHH
Q 003528 78 ------TKGIWMARCAGIEPCTLIMDLE-------GTDGRE--------------------RGEDDTAFEKQSALFALAV 124 (813)
Q Consensus 78 ------~~g~~~~~~~~~e~~~~vld~~-------g~~~~e--------------------~~~~~~~~erQrv~iA~AL 124 (813)
..++.++. ....+...+.++. +..... .......+|+||++||+|+
T Consensus 97 ~~~~~~~i~~v~q~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral 175 (269)
T cd03294 97 RELRRKKISMVFQS-FALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARAL 175 (269)
T ss_pred hhhhcCcEEEEecC-cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 11222222 1111122222222 111100 0011122399999999999
Q ss_pred H---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccc
Q 003528 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (813)
Q Consensus 125 a---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~ 201 (813)
+ ++|||||||+|||+.. ...+.+++.++.++.|.|||++|||++.+...+++++++. +|+++..|++.++
T Consensus 176 ~~~p~illLDEPt~~LD~~~------~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~-~G~i~~~g~~~~~ 248 (269)
T cd03294 176 AVDPDILLMDEAFSALDPLI------RREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMK-DGRLVQVGTPEEI 248 (269)
T ss_pred hcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE-CCEEEEeCCHHHH
Confidence 9 9999999999999999 9999999999876558999999999988776666666555 4999988877655
Q ss_pred c
Q 003528 202 H 202 (813)
Q Consensus 202 ~ 202 (813)
+
T Consensus 249 ~ 249 (269)
T cd03294 249 L 249 (269)
T ss_pred H
Confidence 4
No 140
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=7.8e-25 Score=219.15 Aligned_cols=156 Identities=12% Similarity=0.148 Sum_probs=120.7
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeec-----------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT----------- 78 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~----------- 78 (813)
++++|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |.+|+..-.
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i--~~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~ 71 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTV--EKGEIYGLLGPNGAGKTTLIKIILGLLK----PDSGEIKVLGKDIKKEPEEV 71 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEECCEEcccchHhh
Confidence 478999999975 57999999999 5899999999999999999999999997 888973210
Q ss_pred ---cceecccccCCCchhHHHHhhCCCccccccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHH
Q 003528 79 ---KGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVF 152 (813)
Q Consensus 79 ---~g~~~~~~~~~e~~~~vld~~g~~~~e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ 152 (813)
.++.++. ....+...+.++.. ...+|+||++||+|++ +++|+||||++||+.. ...+.
T Consensus 72 ~~~i~~~~q~-~~~~~~~tv~~~~~---------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~------~~~l~ 135 (173)
T cd03230 72 KRRIGYLPEE-PSLYENLTVRENLK---------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPES------RREFW 135 (173)
T ss_pred hccEEEEecC-CccccCCcHHHHhh---------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH------HHHHH
Confidence 0111111 11111112222221 4557999999999999 9999999999999999 99999
Q ss_pred HHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeE
Q 003528 153 QVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (813)
Q Consensus 153 ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI 192 (813)
+++.++.++ |.|+|++|||.+.+...+++++++.+ |++
T Consensus 136 ~~l~~~~~~-g~tiii~th~~~~~~~~~d~i~~l~~-g~i 173 (173)
T cd03230 136 ELLRELKKE-GKTILLSSHILEEAERLCDRVAILNN-GRI 173 (173)
T ss_pred HHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEEEeC-CCC
Confidence 999999775 89999999999887765666655544 753
No 141
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=8.7e-25 Score=231.58 Aligned_cols=185 Identities=12% Similarity=0.111 Sum_probs=131.3
Q ss_pred CCCccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCCeeee------
Q 003528 5 EECCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFRE-MDAFKGRSQT------ 77 (813)
Q Consensus 5 ~~~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~-m~p~sG~~q~------ 77 (813)
...++|+++|+++.|++ ..+|+++||++ .+|++++|+|+|||||||||++|+|+.++. ..|++|++.-
T Consensus 3 ~~~~~l~~~~l~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 3 KNEAIIETENLNLFYTD---FKALNNINIKI--LKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred CCCceEEEeeeEEEeCC---ceeecceeeEE--cCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecc
Confidence 34457999999999975 57999999999 589999999999999999999999998711 0024676210
Q ss_pred -----------ccceecccccC-----CCchhHHHHhhCCCcc----cc---------------------ccchHHHHHH
Q 003528 78 -----------TKGIWMARCAG-----IEPCTLIMDLEGTDGR----ER---------------------GEDDTAFEKQ 116 (813)
Q Consensus 78 -----------~~g~~~~~~~~-----~e~~~~vld~~g~~~~----e~---------------------~~~~~~~erQ 116 (813)
..++.++.... .+++.+.....+.... ++ ......+|||
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~q 157 (254)
T PRK14273 78 SNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQ 157 (254)
T ss_pred cccccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHH
Confidence 01222222111 1122211111111000 00 0111223999
Q ss_pred HHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEE
Q 003528 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (813)
Q Consensus 117 rv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~ 193 (813)
|++||+|++ ++|||||||++||+.. ...+++++.++. + +.|+|++|||++.+...+++++++.+ |+++
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~-~-~~tvii~sH~~~~~~~~~d~i~~l~~-G~i~ 228 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPIS------TGKIEELIINLK-E-SYTIIIVTHNMQQAGRISDRTAFFLN-GCIE 228 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHH------HHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEE
Confidence 999999999 9999999999999999 999999999995 3 68999999999988766666555555 9999
Q ss_pred EecCcccccC
Q 003528 194 DSVPKPQAHM 203 (813)
Q Consensus 194 ~~g~~~e~~~ 203 (813)
..|++.+++.
T Consensus 229 ~~g~~~~~~~ 238 (254)
T PRK14273 229 EESSTDELFF 238 (254)
T ss_pred EeCCHHHHHh
Confidence 9988776653
No 142
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=5.3e-25 Score=231.00 Aligned_cols=183 Identities=14% Similarity=0.085 Sum_probs=143.7
Q ss_pred CccEEEEeeeEEecccc------ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccc
Q 003528 7 CCSTQLIDGDGTFNVSG------IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG 80 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~------~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g 80 (813)
+++++++|+++.|.... ...++++|||++ .+|++++|+|+||||||||-|+|.|+.. |++|++.- .|
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i--~~ge~~glVGESG~GKSTlgr~i~~L~~----pt~G~i~f-~g 74 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSI--KEGETLGLVGESGCGKSTLGRLILGLEE----PTSGEILF-EG 74 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecceeEEE--cCCCEEEEEecCCCCHHHHHHHHHcCcC----CCCceEEE-cC
Confidence 45799999999996421 137899999999 5899999999999999999999999998 99998421 11
Q ss_pred eecccccC---CCchhHHHHhhCCCcccc---ccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHH
Q 003528 81 IWMARCAG---IEPCTLIMDLEGTDGRER---GEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTV 151 (813)
Q Consensus 81 ~~~~~~~~---~e~~~~vld~~g~~~~e~---~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v 151 (813)
.-...... .+.+.-.++..|+..... ......+|+||+.|||||+ +++++|||+++||... +..+
T Consensus 75 ~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSi------qaqI 148 (268)
T COG4608 75 KDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSV------QAQI 148 (268)
T ss_pred cchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhH------HHHH
Confidence 10100001 122344455556543221 1223445999999999999 9999999999999998 9999
Q ss_pred HHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccccC
Q 003528 152 FQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (813)
Q Consensus 152 ~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~~ 203 (813)
++++.++.++.|.|.+|+|||+..+...++++.+|.. |+|++.|+..+++.
T Consensus 149 lnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~-G~iVE~g~~~~~~~ 199 (268)
T COG4608 149 LNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYL-GKIVEIGPTEEVFS 199 (268)
T ss_pred HHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEec-CceeEecCHHHHhh
Confidence 9999999998999999999999999987776666655 99999999988875
No 143
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.92 E-value=7.1e-25 Score=220.84 Aligned_cols=168 Identities=21% Similarity=0.234 Sum_probs=126.2
Q ss_pred EEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccccC--
Q 003528 11 QLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG-- 88 (813)
Q Consensus 11 el~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~~~-- 88 (813)
+++|++++|++ ..+|+++||++ .+|++++|+||||||||||+++|+|+.+ |++|+..- .|.-......
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i--~~G~~~~l~G~nGsGKStLl~~i~G~~~----~~~G~v~~-~g~~~~~~~~~~ 70 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSI--EAGEIVGILGPNGAGKSTLLKTLAGLLK----PSSGEILL-DGKDLASLSPKE 70 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEE--CCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEE-CCEECCcCCHHH
Confidence 47899999975 57999999999 5899999999999999999999999997 89998421 1211110000
Q ss_pred -CCchhH---HHHhhCCCcc--ccccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhh
Q 003528 89 -IEPCTL---IMDLEGTDGR--ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLF 159 (813)
Q Consensus 89 -~e~~~~---vld~~g~~~~--e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~ 159 (813)
...+.+ +++..|+... ........+|+||++||+|++ +++|+||||++||+.. ...+.+++.++.
T Consensus 71 ~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~------~~~~~~~l~~~~ 144 (180)
T cd03214 71 LARKIAYVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAH------QIELLELLRRLA 144 (180)
T ss_pred HHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH------HHHHHHHHHHHH
Confidence 001111 2334454321 122334567999999999999 9999999999999999 999999999987
Q ss_pred cCCCceEEEEeecCCCcccccCcceeeecCCeEEEe
Q 003528 160 SPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (813)
Q Consensus 160 ~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~ 195 (813)
++.+.|+|++||+++.+...+++.+++.+ |++...
T Consensus 145 ~~~~~tiii~sh~~~~~~~~~d~~~~l~~-g~i~~~ 179 (180)
T cd03214 145 RERGKTVVMVLHDLNLAARYADRVILLKD-GRIVAQ 179 (180)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEec
Confidence 64478999999999988766666666554 998754
No 144
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.1e-24 Score=230.26 Aligned_cols=182 Identities=15% Similarity=0.085 Sum_probs=130.6
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC-CCCCCeee---------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREM-DAFKGRSQ--------- 76 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m-~p~sG~~q--------- 76 (813)
|++|+++|++++|++ ..+++++||++ .+|++++|+||||||||||+++|+|+..+.. .|++|++.
T Consensus 1 ~~~l~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~ 75 (250)
T PRK14247 1 MNKIEIRDLKVSFGQ---VEVLDGVNLEI--PDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKM 75 (250)
T ss_pred CceEEEEeeEEEECC---eeeeecceeEE--cCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcC
Confidence 347999999999976 57999999999 5899999999999999999999999985100 03578721
Q ss_pred ------eccceecccccCCCchhHHHHhh---------------------------CCCc------cccccchHHHHHHH
Q 003528 77 ------TTKGIWMARCAGIEPCTLIMDLE---------------------------GTDG------RERGEDDTAFEKQS 117 (813)
Q Consensus 77 ------~~~g~~~~~~~~~e~~~~vld~~---------------------------g~~~------~e~~~~~~~~erQr 117 (813)
...++.++.. ...+...+.++. |+.. .........+|+||
T Consensus 76 ~~~~~~~~i~~v~q~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qr 154 (250)
T PRK14247 76 DVIELRRRVQMVFQIP-NPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQR 154 (250)
T ss_pred CHHHHhccEEEEeccC-ccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHH
Confidence 1112222221 111111222221 1100 00011122349999
Q ss_pred HHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEE
Q 003528 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (813)
Q Consensus 118 v~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~ 194 (813)
++||+|++ ++|||||||++||+.. ...+.+.+.++. + |.|+|++|||++.+...+++++++. +|++..
T Consensus 155 v~laral~~~p~lllLDEP~~~LD~~~------~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~-~G~i~~ 225 (250)
T PRK14247 155 LCIARALAFQPEVLLADEPTANLDPEN------TAKIESLFLELK-K-DMTIVLVTHFPQQAARISDYVAFLY-KGQIVE 225 (250)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEE-CCeEEE
Confidence 99999999 9999999999999999 999999999985 3 7899999999998766566555554 599999
Q ss_pred ecCcccccC
Q 003528 195 SVPKPQAHM 203 (813)
Q Consensus 195 ~g~~~e~~~ 203 (813)
.|++.+++.
T Consensus 226 ~g~~~~~~~ 234 (250)
T PRK14247 226 WGPTREVFT 234 (250)
T ss_pred ECCHHHHHc
Confidence 988776543
No 145
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.92 E-value=7.6e-25 Score=244.60 Aligned_cols=165 Identities=18% Similarity=0.153 Sum_probs=124.5
Q ss_pred cceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-----------------------ccce
Q 003528 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT-----------------------TKGI 81 (813)
Q Consensus 25 ~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~-----------------------~~g~ 81 (813)
..+|+++||++ .+|++++|+|+|||||||||++|+|+.. |++|++.- ..++
T Consensus 37 ~~~l~~vsf~i--~~Gei~~I~G~nGsGKSTLlr~L~Gl~~----p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~ 110 (382)
T TIGR03415 37 VVGVANASLDI--EEGEICVLMGLSGSGKSSLLRAVNGLNP----VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSM 110 (382)
T ss_pred EEEEEeeEEEE--cCCCEEEEECCCCCcHHHHHHHHhCCCC----CCCcEEEECCEecccccccCCHHHHHHHhcCCEEE
Confidence 45799999999 5899999999999999999999999998 88887311 1122
Q ss_pred ecccccCCCchhHHHHhh-------CCCccccccc--------------------hHHHHHHHHHHHHHHH---hHhhhc
Q 003528 82 WMARCAGIEPCTLIMDLE-------GTDGRERGED--------------------DTAFEKQSALFALAVS---DIVLIN 131 (813)
Q Consensus 82 ~~~~~~~~e~~~~vld~~-------g~~~~e~~~~--------------------~~~~erQrv~iA~ALa---dvLLLD 131 (813)
.++.. ...+...+.++. +.+..++... ...+|+||++||+||+ +|||+|
T Consensus 111 vfQ~~-~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlD 189 (382)
T TIGR03415 111 VFQKF-ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMD 189 (382)
T ss_pred EECCC-cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 22222 222223333332 2221111111 1113999999999999 999999
Q ss_pred cCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccccC
Q 003528 132 MWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (813)
Q Consensus 132 EPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~~ 203 (813)
|||++||+.. +..+.+.+.++.++.++||||||||++++...+++++++.+ |+++..|++.+++.
T Consensus 190 EPts~LD~~~------r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~-G~iv~~g~~~ei~~ 254 (382)
T TIGR03415 190 EPFSALDPLI------RTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEG-GRIIQHGTPEEIVL 254 (382)
T ss_pred CCCccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEecCHHHHhh
Confidence 9999999999 99999999999876689999999999988766766666655 99999999887764
No 146
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.92 E-value=1.1e-24 Score=225.59 Aligned_cols=170 Identities=21% Similarity=0.193 Sum_probs=122.7
Q ss_pred cEEEEeeeEEecccc-ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----------
Q 003528 9 STQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~-~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---------- 77 (813)
+|+++|++++|++.. ...+++++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i--~~G~~~~i~G~nGsGKSTLl~~i~G~~~----~~~G~i~~~g~~~~~~~~ 74 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSI--GKGEIVAIVGSSGSGKSTLLHLLGGLDN----PTSGEVLFNGQSLSKLSS 74 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEECCEEhhhcCH
Confidence 378999999996411 136999999999 5899999999999999999999999997 88897310
Q ss_pred ---------ccceecccccCCCchhHHHHhhCC-------Cccc---c-----------------ccchHHHHHHHHHHH
Q 003528 78 ---------TKGIWMARCAGIEPCTLIMDLEGT-------DGRE---R-----------------GEDDTAFEKQSALFA 121 (813)
Q Consensus 78 ---------~~g~~~~~~~~~e~~~~vld~~g~-------~~~e---~-----------------~~~~~~~erQrv~iA 121 (813)
..++.++. ....+...+.++... ...+ + ......+|+||++||
T Consensus 75 ~~~~~~~~~~i~~v~q~-~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 153 (221)
T TIGR02211 75 NERAKLRNKKLGFIYQF-HHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIA 153 (221)
T ss_pred hHHHHHHHhcEEEEecc-cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 11222222 122222233333211 1000 0 001112399999999
Q ss_pred HHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEE
Q 003528 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (813)
Q Consensus 122 ~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~ 193 (813)
+|++ ++|||||||++||+.. ...+.+.+.++.++.|.|||++|||++.+.. ++ .++.+++|+++
T Consensus 154 ral~~~p~illlDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d-~v~~l~~G~i~ 220 (221)
T TIGR02211 154 RALVNQPSLVLADEPTGNLDNNN------AKIIFDLMLELNRELNTSFLVVTHDLELAKK-LD-RVLEMKDGQLF 220 (221)
T ss_pred HHHhCCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cC-EEEEEeCCEec
Confidence 9999 9999999999999999 9999999999876558999999999987753 54 44445558875
No 147
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.92 E-value=9e-25 Score=233.73 Aligned_cols=182 Identities=15% Similarity=0.165 Sum_probs=132.8
Q ss_pred ccEEEEeeeEEeccc------cccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----
Q 003528 8 CSTQLIDGDGTFNVS------GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~------~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---- 77 (813)
++|++.|+++.|+.. ..+.+++++||++ .+|++++|+|||||||||||++|+|+.. |++|+..-
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~sG~i~~~g~~ 75 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSL--KSGETVALLGRSGCGKSTLARLLVGLES----PSQGNVSWRGEP 75 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEECCEe
Confidence 479999999999630 0157999999999 5899999999999999999999999987 88897310
Q ss_pred --------------ccceeccccc-CCCchhHHHHhh--------------------------CCCc---cccccchHHH
Q 003528 78 --------------TKGIWMARCA-GIEPCTLIMDLE--------------------------GTDG---RERGEDDTAF 113 (813)
Q Consensus 78 --------------~~g~~~~~~~-~~e~~~~vld~~--------------------------g~~~---~e~~~~~~~~ 113 (813)
..++.++... .+.+...+.++. |+.. .........+
T Consensus 76 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G 155 (268)
T PRK10419 76 LAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGG 155 (268)
T ss_pred ccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChH
Confidence 1122222211 111111111111 1110 0011112234
Q ss_pred HHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCC
Q 003528 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (813)
Q Consensus 114 erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~G 190 (813)
|+||++||+|++ ++|||||||++||+.. ...+.+.+.++.++.+.|+|++||+++.+...+++++++.+ |
T Consensus 156 e~qrl~laral~~~p~lllLDEPt~~LD~~~------~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~-G 228 (268)
T PRK10419 156 QLQRVCLARALAVEPKLLILDEAVSNLDLVL------QAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDN-G 228 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccCHHH------HHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEEC-C
Confidence 999999999999 9999999999999999 99999999998765589999999999988766666666554 9
Q ss_pred eEEEecCccccc
Q 003528 191 KIWDSVPKPQAH 202 (813)
Q Consensus 191 kI~~~g~~~e~~ 202 (813)
+++..|++.+++
T Consensus 229 ~i~~~g~~~~~~ 240 (268)
T PRK10419 229 QIVETQPVGDKL 240 (268)
T ss_pred EEeeeCChhhcc
Confidence 999998877754
No 148
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.92 E-value=8.3e-25 Score=247.41 Aligned_cols=175 Identities=15% Similarity=0.132 Sum_probs=138.4
Q ss_pred CCccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee--------
Q 003528 6 ECCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT-------- 77 (813)
Q Consensus 6 ~~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~-------- 77 (813)
+++.++++|++|+|++ ..+|++|||++ .+|+|++|+|.||||||||+|+|+|... |++|++.-
T Consensus 5 ~~~ll~~~~i~K~Fgg---V~AL~~v~l~v--~~GEV~aL~GeNGAGKSTLmKiLsGv~~----p~~G~I~~~G~~~~~~ 75 (500)
T COG1129 5 TPPLLELRGISKSFGG---VKALDGVSLTV--RPGEVHALLGENGAGKSTLMKILSGVYP----PDSGEILIDGKPVAFS 75 (500)
T ss_pred ccceeeeecceEEcCC---ceeeccceeEE--eCceEEEEecCCCCCHHHHHHHHhCccc----CCCceEEECCEEccCC
Confidence 3457999999999988 79999999999 5899999999999999999999999998 99998311
Q ss_pred ------ccc--eecccccCCCchhHHHHhhCCCccccc-------------------------------cchHHHHHHHH
Q 003528 78 ------TKG--IWMARCAGIEPCTLIMDLEGTDGRERG-------------------------------EDDTAFEKQSA 118 (813)
Q Consensus 78 ------~~g--~~~~~~~~~e~~~~vld~~g~~~~e~~-------------------------------~~~~~~erQrv 118 (813)
..| .++|.. ..-+.+.|.+|.-+....+. ....-.|||.|
T Consensus 76 sp~~A~~~GI~~V~QEl-~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~V 154 (500)
T COG1129 76 SPRDALAAGIATVHQEL-SLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMV 154 (500)
T ss_pred CHHHHHhCCcEEEeech-hccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHH
Confidence 011 222222 23344455555422111000 00011299999
Q ss_pred HHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEe
Q 003528 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (813)
Q Consensus 119 ~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~ 195 (813)
.||+|++ +||||||||+.|+... ...+++++++|..+ |.++|||||.++++...|++++++.| |+++..
T Consensus 155 eIArAl~~~arllIlDEPTaaLt~~E------~~~Lf~~ir~Lk~~-Gv~ii~ISHrl~Ei~~i~DritVlRD-G~~v~~ 226 (500)
T COG1129 155 EIARALSFDARVLILDEPTAALTVKE------TERLFDLIRRLKAQ-GVAIIYISHRLDEVFEIADRITVLRD-GRVVGT 226 (500)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHhC-CCEEEEEcCcHHHHHHhcCEEEEEeC-CEEeee
Confidence 9999999 8999999999999999 99999999999865 99999999999999888998888888 999988
Q ss_pred cCc
Q 003528 196 VPK 198 (813)
Q Consensus 196 g~~ 198 (813)
.+.
T Consensus 227 ~~~ 229 (500)
T COG1129 227 RPT 229 (500)
T ss_pred ccc
Confidence 874
No 149
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.2e-24 Score=230.22 Aligned_cols=182 Identities=18% Similarity=0.174 Sum_probs=129.9
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCCeee----e----
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFRE-MDAFKGRSQ----T---- 77 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~-m~p~sG~~q----~---- 77 (813)
+++|+++|++++|++ ..+|+++||++ .+|++++|+||||||||||+++|+|+.++. -.|++|++. .
T Consensus 2 ~~~l~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~ 76 (253)
T PRK14267 2 KFAIETVNLRVYYGS---NHVIKGVDLKI--PQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSP 76 (253)
T ss_pred cceEEEEeEEEEeCC---eeeeecceEEE--cCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence 457999999999976 57999999999 589999999999999999999999998610 001478621 0
Q ss_pred ---------ccceecccccCCCchhHHHHhh-------CC--Cccc------------------------cccchHHHHH
Q 003528 78 ---------TKGIWMARCAGIEPCTLIMDLE-------GT--DGRE------------------------RGEDDTAFEK 115 (813)
Q Consensus 78 ---------~~g~~~~~~~~~e~~~~vld~~-------g~--~~~e------------------------~~~~~~~~er 115 (813)
..+++++... ..+...+.++. +. ...+ .......+|+
T Consensus 77 ~~~~~~~~~~i~~~~q~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 155 (253)
T PRK14267 77 DVDPIEVRREVGMVFQYPN-PFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQR 155 (253)
T ss_pred ccChHHHhhceeEEecCCc-cCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHH
Confidence 0122222211 11111122111 10 0000 0011122499
Q ss_pred HHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeE
Q 003528 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (813)
Q Consensus 116 Qrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI 192 (813)
||++||+|++ ++||+||||++||+.. ...+.+.+.++.+ +.|+|++|||++.+...+++++++.+ |++
T Consensus 156 qrv~laral~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~-G~i 226 (253)
T PRK14267 156 QRLVIARALAMKPKILLMDEPTANIDPVG------TAKIEELLFELKK--EYTIVLVTHSPAQAARVSDYVAFLYL-GKL 226 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHhh--CCEEEEEECCHHHHHhhCCEEEEEEC-CEE
Confidence 9999999999 9999999999999999 9999999999853 58999999999987766666555555 999
Q ss_pred EEecCcccccC
Q 003528 193 WDSVPKPQAHM 203 (813)
Q Consensus 193 ~~~g~~~e~~~ 203 (813)
+..|++.+++.
T Consensus 227 ~~~~~~~~~~~ 237 (253)
T PRK14267 227 IEVGPTRKVFE 237 (253)
T ss_pred EEeCCHHHHHh
Confidence 99988776543
No 150
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.92 E-value=1.1e-24 Score=226.98 Aligned_cols=175 Identities=14% Similarity=0.090 Sum_probs=128.4
Q ss_pred CCCccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-------
Q 003528 5 EECCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------- 77 (813)
Q Consensus 5 ~~~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~------- 77 (813)
+..++|+++|+++.|++ ..+++++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 3 ~~~~~i~~~~l~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~~~~ 73 (225)
T PRK10247 3 ENSPLLQLQNVGYLAGD---AKILNNISFSL--RAGEFKLITGPSGCGKSTLLKIVASLIS----PTSGTLLFEGEDIST 73 (225)
T ss_pred CCCceEEEeccEEeeCC---ceeeeccEEEE--cCCCEEEEECCCCCCHHHHHHHHhcccC----CCCCeEEECCEEcCc
Confidence 34457999999999975 67999999999 5899999999999999999999999987 88997310
Q ss_pred --------ccceecccccCCCchhHHHHhh-----------------------CCCc---cccccchHHHHHHHHHHHHH
Q 003528 78 --------TKGIWMARCAGIEPCTLIMDLE-----------------------GTDG---RERGEDDTAFEKQSALFALA 123 (813)
Q Consensus 78 --------~~g~~~~~~~~~e~~~~vld~~-----------------------g~~~---~e~~~~~~~~erQrv~iA~A 123 (813)
..++.++... ..+ ..+.++. |+.. .........+|+||++||+|
T Consensus 74 ~~~~~~~~~i~~~~q~~~-l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara 151 (225)
T PRK10247 74 LKPEIYRQQVSYCAQTPT-LFG-DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRN 151 (225)
T ss_pred CCHHHHHhccEEEecccc-ccc-ccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHH
Confidence 1122222211 111 1222222 1110 00011112249999999999
Q ss_pred HH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecC
Q 003528 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (813)
Q Consensus 124 La---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~ 197 (813)
++ +++|+||||++||+.. ...+.+++.++.++.|.|||++|||++.+. .+++++++.+++..+.+|.
T Consensus 152 l~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 152 LQFMPKVLLLDEITSALDESN------KHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQEAR 221 (225)
T ss_pred HhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHhhhh
Confidence 99 9999999999999999 999999999987656899999999998886 4666666655555556554
No 151
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.5e-24 Score=232.47 Aligned_cols=182 Identities=13% Similarity=0.101 Sum_probs=131.7
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-----------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----------- 77 (813)
+|++.|++++|+++ +.+++++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 6 ~l~~~~l~~~~~~~--~~il~~vsl~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~i~~~~~~ 77 (272)
T PRK15056 6 GIVVNDVTVTWRNG--HTALRDASFTV--PGGSIAALVGVNGSGKSTLFKALMGFVR----LASGKISILGQPTRQALQK 77 (272)
T ss_pred eEEEEeEEEEecCC--cEEEEeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCEEhHHhhcc
Confidence 69999999999632 57999999999 5899999999999999999999999997 88898320
Q ss_pred -ccceecccccC-CCchhHHHHhh-----------------------------CCCc--cccccchHHHHHHHHHHHHHH
Q 003528 78 -TKGIWMARCAG-IEPCTLIMDLE-----------------------------GTDG--RERGEDDTAFEKQSALFALAV 124 (813)
Q Consensus 78 -~~g~~~~~~~~-~e~~~~vld~~-----------------------------g~~~--~e~~~~~~~~erQrv~iA~AL 124 (813)
..++..+.... ......+.++. |+.. .........+|+||++||+|+
T Consensus 78 ~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL 157 (272)
T PRK15056 78 NLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAI 157 (272)
T ss_pred ceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 12222222110 00001111111 1100 000001112399999999999
Q ss_pred H---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccc
Q 003528 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (813)
Q Consensus 125 a---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~ 201 (813)
+ ++||+||||++||+.. ...+.+++.++.++ |.|||+||||++.+...+++. ++.+ |+++..|++.++
T Consensus 158 ~~~p~llllDEPt~~LD~~~------~~~l~~~L~~~~~~-g~tviivsH~~~~~~~~~d~v-~~~~-G~i~~~g~~~~~ 228 (272)
T PRK15056 158 AQQGQVILLDEPFTGVDVKT------EARIISLLRELRDE-GKTMLVSTHNLGSVTEFCDYT-VMVK-GTVLASGPTETT 228 (272)
T ss_pred hcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEE-EEEC-CEEEeecCHHhc
Confidence 9 9999999999999999 99999999998754 899999999998877656654 5555 999999887776
Q ss_pred cCCccc
Q 003528 202 HMETPL 207 (813)
Q Consensus 202 ~~~~~l 207 (813)
+....+
T Consensus 229 ~~~~~~ 234 (272)
T PRK15056 229 FTAENL 234 (272)
T ss_pred cCHHHH
Confidence 543333
No 152
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.91 E-value=1.2e-24 Score=233.45 Aligned_cols=187 Identities=12% Similarity=0.088 Sum_probs=135.2
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCC--------CCeeee---
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF--------KGRSQT--- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~--------sG~~q~--- 77 (813)
||+++|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |. +|+..-
T Consensus 1 ml~~~nl~~~~~~---~~il~~vsl~i--~~Ge~~~l~G~nGsGKSTLl~~laG~~~----p~~~~~~~~~~G~i~~~g~ 71 (272)
T PRK13547 1 MLTADHLHVARRH---RAILRDLSLRI--EPGRVTALLGRNGAGKSTLLKALAGDLT----GGGAPRGARVTGDVTLNGE 71 (272)
T ss_pred CeEEEEEEEEECC---EeEEecceEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CcccccccCCceEEEECCE
Confidence 4899999999976 67999999999 5899999999999999999999999987 65 676210
Q ss_pred ------------ccceecccccCCCchhHHHHhhCCCc-----------ccccc--------------------chHHHH
Q 003528 78 ------------TKGIWMARCAGIEPCTLIMDLEGTDG-----------RERGE--------------------DDTAFE 114 (813)
Q Consensus 78 ------------~~g~~~~~~~~~e~~~~vld~~g~~~-----------~e~~~--------------------~~~~~e 114 (813)
..+++.+..... ....+.++..... .+..+ ....+|
T Consensus 72 ~~~~~~~~~~~~~~~~v~q~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~ 150 (272)
T PRK13547 72 PLAAIDAPRLARLRAVLPQAAQPA-FAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGE 150 (272)
T ss_pred EcccCCHHHHHhhcEEecccCCCC-CCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHH
Confidence 012222221111 1133444432110 00000 011139
Q ss_pred HHHHHHHHHHH------------hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCc
Q 003528 115 KQSALFALAVS------------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (813)
Q Consensus 115 rQrv~iA~ALa------------dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~ 182 (813)
+||++||+|++ ++|||||||++||+.. ...+.+++.++.++.|.|||+||||++.+...+++
T Consensus 151 ~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~ 224 (272)
T PRK13547 151 LARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAH------QHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADR 224 (272)
T ss_pred HHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHH------HHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCE
Confidence 99999999995 7999999999999999 99999999998765589999999999988766666
Q ss_pred ceeeecCCeEEEecCcccccCCccchhhhc
Q 003528 183 PVLREDIQKIWDSVPKPQAHMETPLSEFFN 212 (813)
Q Consensus 183 ~vll~~~GkI~~~g~~~e~~~~~~l~d~f~ 212 (813)
.+++.+ |+|+..|++.++.....+...|+
T Consensus 225 i~~l~~-G~i~~~g~~~~~~~~~~~~~~~~ 253 (272)
T PRK13547 225 IAMLAD-GAIVAHGAPADVLTPAHIARCYG 253 (272)
T ss_pred EEEEEC-CeEEEecCHHHHcCHHHHHHHhC
Confidence 666655 99999988776654333444443
No 153
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.91 E-value=1.2e-24 Score=229.52 Aligned_cols=175 Identities=16% Similarity=0.153 Sum_probs=129.4
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCC-----CCeeee------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF-----KGRSQT------ 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~-----sG~~q~------ 77 (813)
||+++|++++|++ ..+++++||++ .+|++++|+|+|||||||||++|+|+.+ |+ +|+..-
T Consensus 1 ~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~~----p~~~~~~~G~i~~~g~~~~ 71 (247)
T TIGR00972 1 AIEIENLNLFYGE---KEALKNINLDI--PKNQVTALIGPSGCGKSTLLRSLNRMND----LVPGVRIEGKVLFDGQDIY 71 (247)
T ss_pred CEEEEEEEEEECC---eeeecceeEEE--CCCCEEEEECCCCCCHHHHHHHHhccCC----CCcCCCCceEEEECCEEcc
Confidence 5899999999976 57999999999 5899999999999999999999999997 66 787310
Q ss_pred -----------ccceecccccCCCchhHHHHhh--------------------------CCC----c--cccccchHHHH
Q 003528 78 -----------TKGIWMARCAGIEPCTLIMDLE--------------------------GTD----G--RERGEDDTAFE 114 (813)
Q Consensus 78 -----------~~g~~~~~~~~~e~~~~vld~~--------------------------g~~----~--~e~~~~~~~~e 114 (813)
..++.++.. ...+ ..+.++. |+. . .........+|
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~-~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~ 149 (247)
T TIGR00972 72 DKKIDVVELRRRVGMVFQKP-NPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQ 149 (247)
T ss_pred ccccchHHHHhheEEEecCc-ccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHH
Confidence 011222221 1111 1222211 111 0 00011122349
Q ss_pred HHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCe
Q 003528 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (813)
Q Consensus 115 rQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~Gk 191 (813)
|||++||+|++ +++|+||||++||+.. ...+++++.++.+ +.|+|+||||++.+...+++++++. +|+
T Consensus 150 ~qrv~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~-~G~ 220 (247)
T TIGR00972 150 QQRLCIARALAVEPEVLLLDEPTSALDPIA------TGKIEELIQELKK--KYTIVIVTHNMQQAARISDRTAFFY-DGE 220 (247)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHh--cCeEEEEecCHHHHHHhCCEEEEEE-CCE
Confidence 99999999999 9999999999999999 9999999999865 4899999999998876666655555 499
Q ss_pred EEEecCcccccC
Q 003528 192 IWDSVPKPQAHM 203 (813)
Q Consensus 192 I~~~g~~~e~~~ 203 (813)
++..|++.+++.
T Consensus 221 i~~~~~~~~~~~ 232 (247)
T TIGR00972 221 LVEYGPTEQIFT 232 (247)
T ss_pred EEEeCCHHHHHh
Confidence 999988776543
No 154
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.91 E-value=1.5e-24 Score=217.03 Aligned_cols=155 Identities=15% Similarity=0.120 Sum_probs=118.5
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeec-----------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT----------- 78 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~----------- 78 (813)
|+++|++++|++. ...+++++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-.
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i--~~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~ 73 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSI--EPGESLAIIGPSGSGKSTLARLILGLLR----PTSGRVRLDGADISQWDPNE 73 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEE--CCCCEEEEECCCCCCHHHHHHHHHhccC----CCCCeEEECCEEcccCCHHH
Confidence 4789999999642 246999999999 5899999999999999999999999997 888973210
Q ss_pred ----cceecccccCCCchhHHHHhhCCCccccccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHH
Q 003528 79 ----KGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTV 151 (813)
Q Consensus 79 ----~g~~~~~~~~~e~~~~vld~~g~~~~e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v 151 (813)
.+++++.. ...+ ..+.++. ...+|+||++||+|++ +++||||||++||+.. +..+
T Consensus 74 ~~~~i~~~~q~~-~~~~-~tv~~~l----------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~------~~~l 135 (173)
T cd03246 74 LGDHVGYLPQDD-ELFS-GSIAENI----------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEG------ERAL 135 (173)
T ss_pred HHhheEEECCCC-cccc-CcHHHHC----------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHH------HHHH
Confidence 01111111 1111 1222222 4557999999999999 9999999999999999 9999
Q ss_pred HHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeE
Q 003528 152 FQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (813)
Q Consensus 152 ~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI 192 (813)
.+++.++.++ |+|+|++|||++.+. .+++++++ ++|++
T Consensus 136 ~~~l~~~~~~-~~tii~~sh~~~~~~-~~d~v~~l-~~G~i 173 (173)
T cd03246 136 NQAIAALKAA-GATRIVIAHRPETLA-SADRILVL-EDGRV 173 (173)
T ss_pred HHHHHHHHhC-CCEEEEEeCCHHHHH-hCCEEEEE-ECCCC
Confidence 9999998764 899999999998774 45555444 44764
No 155
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.91 E-value=9.5e-25 Score=252.27 Aligned_cols=178 Identities=15% Similarity=0.120 Sum_probs=132.7
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeec----------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT---------- 78 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~---------- 78 (813)
||+++|++++|++ ..+|+++||++ .+|++++|+||||||||||||+|+|+.+ |++|+....
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i--~~Ge~~~liG~nGsGKSTLl~~l~G~~~----p~~G~i~~~~~~~~~~~~~ 73 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTL--NAGDSWAFVGANGSGKSALARALAGELP----LLSGERQSQFSHITRLSFE 73 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEE--cCCCEEEEECCCCCCHHHHHHHHhccCC----CCCceEEECCcccccCCHH
Confidence 6999999999975 56999999999 5899999999999999999999999997 888984210
Q ss_pred -----cceecccccC--CC-----chhHHHHhh-----------------CCCc--cccccchHHHHHHHHHHHHHHH--
Q 003528 79 -----KGIWMARCAG--IE-----PCTLIMDLE-----------------GTDG--RERGEDDTAFEKQSALFALAVS-- 125 (813)
Q Consensus 79 -----~g~~~~~~~~--~e-----~~~~vld~~-----------------g~~~--~e~~~~~~~~erQrv~iA~ALa-- 125 (813)
.+..++.... .. ....+.++. |+.. .........+||||++||+|++
T Consensus 74 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 153 (490)
T PRK10938 74 QLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSE 153 (490)
T ss_pred HHHHHhceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 1122221100 00 011122221 1110 0011122234999999999999
Q ss_pred -hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccccC
Q 003528 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (813)
Q Consensus 126 -dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~~ 203 (813)
++|||||||++||+.. ...+.+++.++.++ |.|||+||||++.+...+++++++.+ |+++..|++.+.+.
T Consensus 154 p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-g~tvii~tH~~~~~~~~~d~v~~l~~-G~i~~~~~~~~~~~ 224 (490)
T PRK10938 154 PDLLILDEPFDGLDVAS------RQQLAELLASLHQS-GITLVLVLNRFDEIPDFVQFAGVLAD-CTLAETGEREEILQ 224 (490)
T ss_pred CCEEEEcCCcccCCHHH------HHHHHHHHHHHHhc-CCeEEEEeCCHHHHHhhCCEEEEEEC-CEEEEeCCHHHHhc
Confidence 9999999999999999 99999999999765 89999999999988876766666655 99999887766544
No 156
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.91 E-value=8.6e-25 Score=220.62 Aligned_cols=159 Identities=9% Similarity=0.063 Sum_probs=121.4
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---------- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---------- 77 (813)
++|+++|++++| +++++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 3 ~~l~~~~l~~~~-------~l~~vs~~i--~~G~~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~~~~~~~ 69 (182)
T cd03215 3 PVLEVRGLSVKG-------AVRDVSFEV--RAGEIVGIAGLVGNGQTELAEALFGLRP----PASGEITLDGKPVTRRSP 69 (182)
T ss_pred cEEEEeccEEEe-------eecceEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCEECCccCH
Confidence 369999999987 799999999 5899999999999999999999999997 88997311
Q ss_pred ------ccceecccc--cCCCchhHHHHhhCCCccccccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChh
Q 003528 78 ------TKGIWMARC--AGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKP 146 (813)
Q Consensus 78 ------~~g~~~~~~--~~~e~~~~vld~~g~~~~e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~ 146 (813)
..++.++.. ....+...+.++..... ....+|+||++||+|++ ++|||||||++||+..
T Consensus 70 ~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~-----~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~----- 139 (182)
T cd03215 70 RDAIRAGIAYVPEDRKREGLVLDLSVAENIALSS-----LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGA----- 139 (182)
T ss_pred HHHHhCCeEEecCCcccCcccCCCcHHHHHHHHh-----hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHH-----
Confidence 011112211 01112223333332211 14556999999999999 9999999999999999
Q ss_pred hHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeE
Q 003528 147 LLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (813)
Q Consensus 147 l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI 192 (813)
.+.+.+++.++.++ |.|+|++||+++.+...+++++++.+ |++
T Consensus 140 -~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~d~v~~l~~-G~i 182 (182)
T cd03215 140 -KAEIYRLIRELADA-GKAVLLISSELDELLGLCDRILVMYE-GRI 182 (182)
T ss_pred -HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEecC-CcC
Confidence 99999999998754 89999999999888766666666554 764
No 157
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.91 E-value=1.3e-24 Score=228.19 Aligned_cols=175 Identities=18% Similarity=0.107 Sum_probs=126.9
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCCCCCCCeeee----------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN--FREMDAFKGRSQT---------- 77 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~--~~~m~p~sG~~q~---------- 77 (813)
|+++|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+. + |++|++.-
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~----~~~G~i~~~g~~~~~~~~ 71 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTV--KKGEIHAIMGPNGSGKSTLSKTIAGHPSYE----VTSGTILFKGQDLLELEP 71 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEE--cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CCcceEEECCEecCCCCH
Confidence 578999999975 67999999999 589999999999999999999999995 4 78887310
Q ss_pred ----cc--ceecccccC------CCchhHHH-------------------------HhhCCCcc--cc-cc-chHHHHHH
Q 003528 78 ----TK--GIWMARCAG------IEPCTLIM-------------------------DLEGTDGR--ER-GE-DDTAFEKQ 116 (813)
Q Consensus 78 ----~~--g~~~~~~~~------~e~~~~vl-------------------------d~~g~~~~--e~-~~-~~~~~erQ 116 (813)
.. ++.++.... .++..+.. +..|+... .+ .. ....+|||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~q 151 (243)
T TIGR01978 72 DERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKK 151 (243)
T ss_pred HHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHH
Confidence 01 111222111 01111111 11122210 11 11 23446999
Q ss_pred HHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEE
Q 003528 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (813)
Q Consensus 117 rv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~ 193 (813)
|++||+|++ ++|||||||++||+.. ...+.+++.++.+ .|.|||+||||++.+...++++++++++|+++
T Consensus 152 rl~la~al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~-~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~ 224 (243)
T TIGR01978 152 RNEILQMALLEPKLAILDEIDSGLDIDA------LKIVAEGINRLRE-PDRSFLIITHYQRLLNYIKPDYVHVLLDGRIV 224 (243)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHH------HHHHHHHHHHHHH-CCcEEEEEEecHHHHHhhcCCeEEEEeCCEEE
Confidence 999999999 9999999999999999 9999999999875 48999999999998876523444445559999
Q ss_pred EecCccc
Q 003528 194 DSVPKPQ 200 (813)
Q Consensus 194 ~~g~~~e 200 (813)
..|++++
T Consensus 225 ~~g~~~~ 231 (243)
T TIGR01978 225 KSGDVEL 231 (243)
T ss_pred EecCHHH
Confidence 8887653
No 158
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.3e-24 Score=223.74 Aligned_cols=167 Identities=17% Similarity=0.185 Sum_probs=123.2
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee------------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------------ 77 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~------------ 77 (813)
|+++|++++|++ .. .++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~l~gl~~----~~~G~i~~~g~~~~~~~~~~ 69 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTF--AQGEITAIVGPSGSGKSTLLNLIAGFET----PQSGRVLINGVDVTAAPPAD 69 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCEEcCcCCHhH
Confidence 478999999965 33 2999999 5899999999999999999999999997 88897310
Q ss_pred -ccceecccccCCCchhHHHHhhCCCcc-------cccc--------------------chHHHHHHHHHHHHHHH---h
Q 003528 78 -TKGIWMARCAGIEPCTLIMDLEGTDGR-------ERGE--------------------DDTAFEKQSALFALAVS---D 126 (813)
Q Consensus 78 -~~g~~~~~~~~~e~~~~vld~~g~~~~-------e~~~--------------------~~~~~erQrv~iA~ALa---d 126 (813)
..++.++.. ...+...+.++...... .... ....+|+||++||+|++ +
T Consensus 70 ~~i~~~~q~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~ 148 (211)
T cd03298 70 RPVSMLFQEN-NLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKP 148 (211)
T ss_pred ccEEEEeccc-ccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 122333332 22222334444321100 0000 01113999999999999 9
Q ss_pred HhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEe
Q 003528 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (813)
Q Consensus 127 vLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~ 195 (813)
++|+||||++||+.. ...+.+.+.++.++.|.|||++|||++.+...+++++++.+ |+++..
T Consensus 149 llllDEP~~~LD~~~------~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~-G~i~~~ 210 (211)
T cd03298 149 VLLLDEPFAALDPAL------RAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDN-GRIAAQ 210 (211)
T ss_pred EEEEcCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEEC-CEEeec
Confidence 999999999999999 99999999998765589999999999988766666655555 998754
No 159
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.91 E-value=2.1e-24 Score=228.95 Aligned_cols=177 Identities=14% Similarity=0.103 Sum_probs=131.0
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCC----CCCeee--------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA----FKGRSQ-------- 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p----~sG~~q-------- 76 (813)
+|+++|++++| + ..+|+++||++ .+|++++|+|+||||||||+++|+|+.+ | ++|+..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----~~~~~~~G~i~~~g~~i~~ 73 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTL--QRGRVLALVGGSGSGKSLTCAAALGILP----AGVRQTAGRVLLDGKPVAP 73 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCCCcCCEEEECCeeccc
Confidence 69999999999 4 57999999999 5899999999999999999999999997 6 788731
Q ss_pred -----eccceeccccc-CCCchhHHHH-------hh----------------CCCc-----cccccchHHHHHHHHHHHH
Q 003528 77 -----TTKGIWMARCA-GIEPCTLIMD-------LE----------------GTDG-----RERGEDDTAFEKQSALFAL 122 (813)
Q Consensus 77 -----~~~g~~~~~~~-~~e~~~~vld-------~~----------------g~~~-----~e~~~~~~~~erQrv~iA~ 122 (813)
...+++++... ...+...+.+ .. ++.. .........+|+||++||+
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~lar 153 (254)
T PRK10418 74 CALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIAL 153 (254)
T ss_pred cccccceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHH
Confidence 01223333321 1111111111 11 1111 0011122335999999999
Q ss_pred HHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcc
Q 003528 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (813)
Q Consensus 123 ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~ 199 (813)
|++ ++|||||||++||+.. ...+.+++.++.++.|.|||++||+++.+...+++++++ ++|+++..+++.
T Consensus 154 al~~~p~lLlLDEPt~~LD~~~------~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l-~~G~i~~~~~~~ 226 (254)
T PRK10418 154 ALLCEAPFIIADEPTTDLDVVA------QARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVM-SHGRIVEQGDVE 226 (254)
T ss_pred HHhcCCCEEEEeCCCcccCHHH------HHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEE-ECCEEEEecCHH
Confidence 999 9999999999999999 999999999987655899999999998887656655555 459999988876
Q ss_pred ccc
Q 003528 200 QAH 202 (813)
Q Consensus 200 e~~ 202 (813)
+.+
T Consensus 227 ~~~ 229 (254)
T PRK10418 227 TLF 229 (254)
T ss_pred HHh
Confidence 654
No 160
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.91 E-value=1.6e-24 Score=251.22 Aligned_cols=177 Identities=15% Similarity=0.101 Sum_probs=133.8
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee---------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT--------- 77 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~--------- 77 (813)
+++|+++|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.-
T Consensus 2 ~~~i~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~l~G~NGsGKSTLl~~l~G~~~----p~~G~i~~~g~~~~~~~ 72 (501)
T PRK10762 2 QALLQLKGIDKAFPG---VKALSGAALNV--YPGRVMALVGENGAGKSTMMKVLTGIYT----RDAGSILYLGKEVTFNG 72 (501)
T ss_pred CceEEEeeeEEEeCC---eEEeeeeeEEE--cCCeEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEECCEECCCCC
Confidence 357999999999975 67999999999 5899999999999999999999999997 88898310
Q ss_pred -------ccceecccccCCCchhHHHHhhCCC-----------ccc--------------------cccchHHHHHHHHH
Q 003528 78 -------TKGIWMARCAGIEPCTLIMDLEGTD-----------GRE--------------------RGEDDTAFEKQSAL 119 (813)
Q Consensus 78 -------~~g~~~~~~~~~e~~~~vld~~g~~-----------~~e--------------------~~~~~~~~erQrv~ 119 (813)
..+++++.. ...+...+.++.... ..+ .......+||||++
T Consensus 73 ~~~~~~~~i~~v~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 151 (501)
T PRK10762 73 PKSSQEAGIGIIHQEL-NLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVE 151 (501)
T ss_pred HHHHHhCCEEEEEcch-hccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHH
Confidence 012222221 112222333332110 000 00111223999999
Q ss_pred HHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEec
Q 003528 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (813)
Q Consensus 120 iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g 196 (813)
||+||+ ++|||||||++||+.. ...+.+++.++.+. |.|||+||||++.+...+++++++.+ |+++..+
T Consensus 152 la~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~-~~tvii~sHd~~~~~~~~d~i~~l~~-G~i~~~~ 223 (501)
T PRK10762 152 IAKVLSFESKVIIMDEPTDALTDTE------TESLFRVIRELKSQ-GRGIVYISHRLKEIFEICDDVTVFRD-GQFIAER 223 (501)
T ss_pred HHHHHhcCCCEEEEeCCcCCCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeC-CEEEEec
Confidence 999999 9999999999999999 99999999999764 89999999999988766666666655 9999988
Q ss_pred Ccccc
Q 003528 197 PKPQA 201 (813)
Q Consensus 197 ~~~e~ 201 (813)
++.++
T Consensus 224 ~~~~~ 228 (501)
T PRK10762 224 EVADL 228 (501)
T ss_pred CcCcC
Confidence 77664
No 161
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.91 E-value=9.6e-25 Score=253.47 Aligned_cols=177 Identities=16% Similarity=0.160 Sum_probs=134.0
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---------- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---------- 77 (813)
++|+++|++++|++ +.+++++||++ .+|++++|+||||||||||||+|+|+.+ |++|+..-
T Consensus 4 ~~l~~~~l~~~~~~---~~il~~vs~~i--~~Ge~~~liG~nGsGKSTLl~~i~Gl~~----p~~G~i~~~g~~i~~~~~ 74 (510)
T PRK09700 4 PYISMAGIGKSFGP---VHALKSVNLTV--YPGEIHALLGENGAGKSTLMKVLSGIHE----PTKGTITINNINYNKLDH 74 (510)
T ss_pred ceEEEeeeEEEcCC---eEEeeeeeEEE--cCCcEEEEECCCCCCHHHHHHHHcCCcC----CCccEEEECCEECCCCCH
Confidence 47999999999976 67999999999 5899999999999999999999999997 88897310
Q ss_pred ------ccceecccccCCCchhHHHHhhCCC--------c------cc--------------------cccchHHHHHHH
Q 003528 78 ------TKGIWMARCAGIEPCTLIMDLEGTD--------G------RE--------------------RGEDDTAFEKQS 117 (813)
Q Consensus 78 ------~~g~~~~~~~~~e~~~~vld~~g~~--------~------~e--------------------~~~~~~~~erQr 117 (813)
..+++++.. ...+...+.++.... + .+ .......+||||
T Consensus 75 ~~~~~~~i~~v~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr 153 (510)
T PRK09700 75 KLAAQLGIGIIYQEL-SVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQM 153 (510)
T ss_pred HHHHHCCeEEEeecc-cccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHH
Confidence 112233321 111222333332110 0 00 000111239999
Q ss_pred HHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEE
Q 003528 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (813)
Q Consensus 118 v~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~ 194 (813)
|+||+||+ ++|||||||++||+.. ...+.+++.++.++ |+|||+||||++.+...+++++++.+ |+++.
T Consensus 154 v~ia~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tiiivsHd~~~~~~~~d~v~~l~~-G~i~~ 225 (510)
T PRK09700 154 LEIAKTLMLDAKVIIMDEPTSSLTNKE------VDYLFLIMNQLRKE-GTAIVYISHKLAEIRRICDRYTVMKD-GSSVC 225 (510)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEee
Confidence 99999999 9999999999999999 99999999999765 89999999999988766666666655 99999
Q ss_pred ecCccccc
Q 003528 195 SVPKPQAH 202 (813)
Q Consensus 195 ~g~~~e~~ 202 (813)
.|++.++.
T Consensus 226 ~g~~~~~~ 233 (510)
T PRK09700 226 SGMVSDVS 233 (510)
T ss_pred ecchhhCC
Confidence 88877654
No 162
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.91 E-value=9.9e-25 Score=258.98 Aligned_cols=185 Identities=11% Similarity=0.017 Sum_probs=137.1
Q ss_pred CCccEEEEeeeEEecccc-ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-------
Q 003528 6 ECCSTQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------- 77 (813)
Q Consensus 6 ~~~~Iel~dls~~y~~~~-~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~------- 77 (813)
.+++|+++|+++.|+... ...+|+++||++ .+|++++|+||||||||||+++|+|+++ |.+|++..
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v--~~Ge~~~lvG~nGsGKSTLl~~l~Gll~----p~~G~i~~~g~~~~~ 82 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSL--QRGETLAIVGESGSGKSVTALALMRLLE----QAGGLVQCDKMLLRR 82 (623)
T ss_pred CCceEEEeceEEEecCCCCceeEEEeeEEEE--CCCCEEEEECCCCChHHHHHHHHHcCCC----CCCeEEEECCEEecc
Confidence 456899999999996311 246999999999 5899999999999999999999999997 77776310
Q ss_pred ----------------------ccceeccccc-C-------CCchhHHHH-------------------hhCCCc-----
Q 003528 78 ----------------------TKGIWMARCA-G-------IEPCTLIMD-------------------LEGTDG----- 103 (813)
Q Consensus 78 ----------------------~~g~~~~~~~-~-------~e~~~~vld-------------------~~g~~~----- 103 (813)
..|++++... . .+++.+.+. ..|+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 162 (623)
T PRK10261 83 RSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTIL 162 (623)
T ss_pred ccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHH
Confidence 1233334321 1 112222211 112211
Q ss_pred cccccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCccccc
Q 003528 104 RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN 180 (813)
Q Consensus 104 ~e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~ 180 (813)
.........+|||||+||+||+ ++|||||||++||+.. ...+.++++++.++.|+|||+||||++.+...+
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~------~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~a 236 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTI------QAQILQLIKVLQKEMSMGVIFITHDMGVVAEIA 236 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHH------HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhC
Confidence 0011122234999999999999 9999999999999999 999999999998666899999999999887767
Q ss_pred CcceeeecCCeEEEecCcccccC
Q 003528 181 LEPVLREDIQKIWDSVPKPQAHM 203 (813)
Q Consensus 181 ~~~vll~~~GkI~~~g~~~e~~~ 203 (813)
++++++.+ |+|+..|++.+++.
T Consensus 237 dri~vl~~-G~i~~~g~~~~~~~ 258 (623)
T PRK10261 237 DRVLVMYQ-GEAVETGSVEQIFH 258 (623)
T ss_pred CEEEEeeC-CeecccCCHHHhhc
Confidence 66666655 99999888777653
No 163
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.91 E-value=1.4e-24 Score=223.61 Aligned_cols=165 Identities=20% Similarity=0.205 Sum_probs=121.6
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----c-------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----T------- 78 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----~------- 78 (813)
|+++|++++|++ ..+++++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..- .
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i--~~G~~~~l~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~ 71 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTV--KKGEVVVIIGPSGSGKSTLLRCINLLEE----PDSGTIIIDGLKLTDDKKNI 71 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEE--CCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCEECCccchhH
Confidence 478999999976 67999999999 5899999999999999999999999997 88897310 0
Q ss_pred ------cceecccccCCCchhHHHHhhCC--------Ccccc--------------------ccchHHHHHHHHHHHHHH
Q 003528 79 ------KGIWMARCAGIEPCTLIMDLEGT--------DGRER--------------------GEDDTAFEKQSALFALAV 124 (813)
Q Consensus 79 ------~g~~~~~~~~~e~~~~vld~~g~--------~~~e~--------------------~~~~~~~erQrv~iA~AL 124 (813)
.++..+.. ...+...+.++... ...+. ......+|+||++||+|+
T Consensus 72 ~~~~~~i~~~~q~~-~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 72 NELRQKVGMVFQQF-NLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred HHHHhcceEEeccc-ccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 11222211 11111222232211 11000 001112399999999999
Q ss_pred H---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeE
Q 003528 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (813)
Q Consensus 125 a---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI 192 (813)
+ ++|||||||+|||+.. ...+.+.+.++.+. |.|||++|||++.+...+++++++.+ |++
T Consensus 151 ~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~~-~~tvi~~sh~~~~~~~~~d~i~~l~~-g~i 213 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPEL------VGEVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRVIFMDD-GRI 213 (213)
T ss_pred hcCCCEEEEeCCccCCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeC-CcC
Confidence 9 9999999999999999 99999999999764 89999999999988766666666654 764
No 164
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2e-24 Score=228.50 Aligned_cols=183 Identities=14% Similarity=0.127 Sum_probs=130.3
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCCeeee--------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFR-EMDAFKGRSQT-------- 77 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~-~m~p~sG~~q~-------- 77 (813)
.++|+++|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+... ...|++|+..-
T Consensus 4 ~~~l~~~~l~~~~~~---~~il~~is~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 78 (253)
T PRK14242 4 PPKMEARGLSFFYGD---FQALHDISLEF--EQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDP 78 (253)
T ss_pred CcEEEEeeeEEEECC---eeeecceeEEE--eCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccc
Confidence 357999999999975 57999999999 58999999999999999999999998520 00146786210
Q ss_pred ---------ccceecccccC-----CCchhHHHHhhCCCcc-------------------------ccccchHHHHHHHH
Q 003528 78 ---------TKGIWMARCAG-----IEPCTLIMDLEGTDGR-------------------------ERGEDDTAFEKQSA 118 (813)
Q Consensus 78 ---------~~g~~~~~~~~-----~e~~~~vld~~g~~~~-------------------------e~~~~~~~~erQrv 118 (813)
..++..+.... .+++.+.....+.... ........+|+||+
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv 158 (253)
T PRK14242 79 HVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRL 158 (253)
T ss_pred ccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHH
Confidence 01222222111 1122221111111000 00111223499999
Q ss_pred HHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEe
Q 003528 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (813)
Q Consensus 119 ~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~ 195 (813)
+||+|++ ++|||||||++||+.. ...+.+++.++. + +.|||+||||++.+...+++++++.+ |+|+..
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~-~-~~tvii~tH~~~~~~~~~d~v~~l~~-G~i~~~ 229 (253)
T PRK14242 159 CIARALAVEPEVLLMDEPASALDPIA------TQKIEELIHELK-A-RYTIIIVTHNMQQAARVSDVTAFFYM-GKLIEV 229 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHh-c-CCeEEEEEecHHHHHHhCCEEEEEEC-CEEEEe
Confidence 9999999 9999999999999999 999999999984 3 68999999999988766666655555 999998
Q ss_pred cCcccccC
Q 003528 196 VPKPQAHM 203 (813)
Q Consensus 196 g~~~e~~~ 203 (813)
|++.+++.
T Consensus 230 g~~~~~~~ 237 (253)
T PRK14242 230 GPTEQIFT 237 (253)
T ss_pred CCHHHHHc
Confidence 88766544
No 165
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.91 E-value=2.4e-24 Score=228.00 Aligned_cols=179 Identities=15% Similarity=0.059 Sum_probs=130.5
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeec---------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT--------- 78 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~--------- 78 (813)
++|+++|+++.|++ ..+++++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.-.
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~~~~~~~ 72 (253)
T TIGR02323 2 PLLQVSGLSKSYGG---GKGCRDVSFDL--YPGEVLGIVGESGSGKSTLLGCLAGRLA----PDHGTATYIMRSGAELEL 72 (253)
T ss_pred ceEEEeeeEEEeCC---ceEeecceEEE--eCCcEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEEeccccccccc
Confidence 36999999999975 57899999999 5899999999999999999999999997 888873210
Q ss_pred ---------------cceecccccC-CCchhHHHHhh--------------------------CCCc---cccccchHHH
Q 003528 79 ---------------KGIWMARCAG-IEPCTLIMDLE--------------------------GTDG---RERGEDDTAF 113 (813)
Q Consensus 79 ---------------~g~~~~~~~~-~e~~~~vld~~--------------------------g~~~---~e~~~~~~~~ 113 (813)
.+..++.... ......+.++. |+.. .........+
T Consensus 73 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG 152 (253)
T TIGR02323 73 YQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGG 152 (253)
T ss_pred ccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHH
Confidence 1122222110 00001111110 1100 0001111224
Q ss_pred HHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCC
Q 003528 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (813)
Q Consensus 114 erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~G 190 (813)
|+||++||+|++ ++||+||||++||+.. .+.+.+++.++.++.|.|+|+||||++.+...+++.+++. +|
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~------~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~-~G 225 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSV------QARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQ-QG 225 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE-CC
Confidence 999999999999 9999999999999999 9999999999876558999999999998876566555554 59
Q ss_pred eEEEecCccccc
Q 003528 191 KIWDSVPKPQAH 202 (813)
Q Consensus 191 kI~~~g~~~e~~ 202 (813)
+++..+++.++.
T Consensus 226 ~i~~~~~~~~~~ 237 (253)
T TIGR02323 226 RVVESGLTDQVL 237 (253)
T ss_pred EEEEECCHHHHh
Confidence 999988766554
No 166
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.91 E-value=2.9e-24 Score=215.92 Aligned_cols=160 Identities=18% Similarity=0.154 Sum_probs=121.9
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeec-----------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT----------- 78 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~----------- 78 (813)
|+++|+++.|... ...+++++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-.
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i--~~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~ 73 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLEL--KQGEKIALLGRSGSGKSTLLQLLTGDLK----PQQGEITLDGVPVSDLEKAL 73 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEE--cCCCEEEEECCCCCCHHHHHHHHhccCC----CCCCEEEECCEEHHHHHHHH
Confidence 5789999999651 136999999999 5899999999999999999999999997 889973210
Q ss_pred ---cceecccccCCCchhHHHHhhCCCccccccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHH
Q 003528 79 ---KGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVF 152 (813)
Q Consensus 79 ---~g~~~~~~~~~e~~~~vld~~g~~~~e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ 152 (813)
.++..+.. ...+ ..+.++. ......+|+||++||+|++ ++||+||||++||+.. .+.++
T Consensus 74 ~~~i~~~~q~~-~~~~-~tv~~~i-------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~------~~~l~ 138 (178)
T cd03247 74 SSLISVLNQRP-YLFD-TTLRNNL-------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPIT------ERQLL 138 (178)
T ss_pred HhhEEEEccCC-eeec-ccHHHhh-------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH------HHHHH
Confidence 11111111 1111 1233322 2334556999999999999 9999999999999999 99999
Q ss_pred HHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEe
Q 003528 153 QVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (813)
Q Consensus 153 ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~ 195 (813)
+.+.++. + +.|+|++|||++.+. .++ +++.+++|+++..
T Consensus 139 ~~l~~~~-~-~~tii~~sh~~~~~~-~~d-~~~~l~~g~i~~~ 177 (178)
T cd03247 139 SLIFEVL-K-DKTLIWITHHLTGIE-HMD-KILFLENGKIIMQ 177 (178)
T ss_pred HHHHHHc-C-CCEEEEEecCHHHHH-hCC-EEEEEECCEEEec
Confidence 9999985 3 789999999998876 454 4444555998764
No 167
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.91 E-value=1.4e-24 Score=223.90 Aligned_cols=167 Identities=17% Similarity=0.158 Sum_probs=121.8
Q ss_pred EEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----------eccc
Q 003528 11 QLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----------TTKG 80 (813)
Q Consensus 11 el~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----------~~~g 80 (813)
+++|++++|++ ..+++++||++ .+|++++|+|||||||||||++|+|+.+ |++|+.. ...+
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~~----p~~G~i~~~g~~~~~~~~~i~ 71 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEV--KPGEFLAIVGPNGAGKSTLLKAILGLLK----PTSGSIRVFGKPLEKERKRIG 71 (213)
T ss_pred CcccceeEECC---EEeeecceeEE--cCCCEEEEECCCCCCHHHHHHHHcCCCC----CCCCEEEECCccHHHHHhheE
Confidence 36899999975 57999999999 5899999999999999999999999997 8899832 1122
Q ss_pred eecccccCCC-chhHHHHhhCCCc-----------cccccc--------------------hHHHHHHHHHHHHHHH---
Q 003528 81 IWMARCAGIE-PCTLIMDLEGTDG-----------RERGED--------------------DTAFEKQSALFALAVS--- 125 (813)
Q Consensus 81 ~~~~~~~~~e-~~~~vld~~g~~~-----------~e~~~~--------------------~~~~erQrv~iA~ALa--- 125 (813)
++++...... ....+.++..... ....+. ...+||||++||+|++
T Consensus 72 ~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 151 (213)
T cd03235 72 YVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDP 151 (213)
T ss_pred EeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 3333221100 1123444331110 000000 1113999999999999
Q ss_pred hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEe
Q 003528 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (813)
Q Consensus 126 dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~ 195 (813)
++||+||||++||+.. ...+.+.+.++.+ .|.|+|++|||++++...+++++++.+ | ++..
T Consensus 152 ~llllDEPt~~LD~~~------~~~l~~~l~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~-~-~~~~ 212 (213)
T cd03235 152 DLLLLDEPFAGVDPKT------QEDIYELLRELRR-EGMTILVVTHDLGLVLEYFDRVLLLNR-T-VVAS 212 (213)
T ss_pred CEEEEeCCcccCCHHH------HHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEcC-c-Eeec
Confidence 9999999999999999 9999999999876 489999999999988766666665543 4 5544
No 168
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.91 E-value=2.7e-24 Score=219.33 Aligned_cols=170 Identities=17% Similarity=0.158 Sum_probs=125.6
Q ss_pred cEEEEeeeEEeccc---cccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCCCCCCCeeee------
Q 003528 9 STQLIDGDGTFNVS---GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN--FREMDAFKGRSQT------ 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~---~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~--~~~m~p~sG~~q~------ 77 (813)
-|+++|++++|+.. ....+++++||++ .+|++++|+||||||||||+++|+|+. . |.+|+..-
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i--~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~----~~~G~i~~~g~~~~ 76 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKA--KPGELTAIMGPSGAGKSTLLNALAGRRTGL----GVSGEVLINGRPLD 76 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEE--cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----CCceEEEECCEeCc
Confidence 48999999999641 0157999999999 589999999999999999999999998 7 88897321
Q ss_pred ------ccceecccccCCCchhHHHHhhCCCccccccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhH
Q 003528 78 ------TKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLL 148 (813)
Q Consensus 78 ------~~g~~~~~~~~~e~~~~vld~~g~~~~e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~ 148 (813)
..++.++. ....+...+.++...... ......+|+||++||+|++ +++|+||||++||+.. .
T Consensus 77 ~~~~~~~i~~~~q~-~~~~~~~t~~~~i~~~~~--~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~------~ 147 (194)
T cd03213 77 KRSFRKIIGYVPQD-DILHPTLTVRETLMFAAK--LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSS------A 147 (194)
T ss_pred hHhhhheEEEccCc-ccCCCCCcHHHHHHHHHH--hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHH------H
Confidence 01111111 111122233333221110 0134567999999999999 9999999999999999 9
Q ss_pred HHHHHHHHHhhcCCCceEEEEeecCC-CcccccCcceeeecCCeEEEe
Q 003528 149 KTVFQVMMRLFSPRKTTLMFVIRDKT-RTPLENLEPVLREDIQKIWDS 195 (813)
Q Consensus 149 ~~v~ell~~L~~~~g~TIL~VtHD~~-~~~~~~~~~vll~~~GkI~~~ 195 (813)
+.+.+++.++.++ |+|+|++|||++ .+...+++++++. +|++...
T Consensus 148 ~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~v~~l~-~G~i~~~ 193 (194)
T cd03213 148 LQVMSLLRRLADT-GRTIICSIHQPSSEIFELFDKLLLLS-QGRVIYF 193 (194)
T ss_pred HHHHHHHHHHHhC-CCEEEEEecCchHHHHHhcCEEEEEe-CCEEEec
Confidence 9999999998764 899999999996 5665555555554 4998754
No 169
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.1e-24 Score=228.26 Aligned_cols=182 Identities=14% Similarity=0.141 Sum_probs=131.3
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCCeeee--------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFRE-MDAFKGRSQT-------- 77 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~-m~p~sG~~q~-------- 77 (813)
.++|+++|++++|++ ..+|+++||++ .+|++++|+|+|||||||||++|+|+.++. -.|++|+..-
T Consensus 2 ~~~l~~~~l~~~~~~---~~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~ 76 (251)
T PRK14270 2 KIKMESKNLNLWYGE---KQALNDINLPI--YENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDK 76 (251)
T ss_pred ccEEEEEEeEEEECC---eeeeeceeEEE--cCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccc
Confidence 358999999999975 67999999999 589999999999999999999999997510 0026786210
Q ss_pred ---------ccceecccccCCCchhHHHHhh-------CCCcc-------------------------ccccchHHHHHH
Q 003528 78 ---------TKGIWMARCAGIEPCTLIMDLE-------GTDGR-------------------------ERGEDDTAFEKQ 116 (813)
Q Consensus 78 ---------~~g~~~~~~~~~e~~~~vld~~-------g~~~~-------------------------e~~~~~~~~erQ 116 (813)
..++.++... ..+ ..+.++. +.... ........+|+|
T Consensus 77 ~~~~~~~~~~i~~~~q~~~-~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 154 (251)
T PRK14270 77 DVDVVELRKRVGMVFQKPN-PFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQ 154 (251)
T ss_pred cccHHHHHhheEEEecCCC-cCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHH
Confidence 0122222211 111 1222221 11000 001112234999
Q ss_pred HHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEE
Q 003528 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (813)
Q Consensus 117 rv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~ 193 (813)
|++||+|++ ++||+||||+|||+.. ...+.+++.++.+ +.|+|+||||++.+...+++++++ ++|+++
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~------~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~d~v~~l-~~G~i~ 225 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPIS------TLKIEDLMVELKK--EYTIVIVTHNMQQASRVSDYTAFF-LMGDLI 225 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHh--CCeEEEEEcCHHHHHHhcCEEEEE-ECCeEE
Confidence 999999999 9999999999999999 9999999999864 589999999999877666655555 559999
Q ss_pred EecCcccccCC
Q 003528 194 DSVPKPQAHME 204 (813)
Q Consensus 194 ~~g~~~e~~~~ 204 (813)
..|++++++.+
T Consensus 226 ~~~~~~~~~~~ 236 (251)
T PRK14270 226 EFNKTEKIFLE 236 (251)
T ss_pred EeCCHHHHhcC
Confidence 99988877654
No 170
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.2e-24 Score=229.33 Aligned_cols=183 Identities=15% Similarity=0.180 Sum_probs=130.2
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCC-CCCCeee----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD-AFKGRSQ---------- 76 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~-p~sG~~q---------- 76 (813)
++|+++|+++.|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+..+.-+ +++|+..
T Consensus 11 ~~l~i~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~ 85 (259)
T PRK14274 11 EVYQINGMNLWYGQ---HHALKNINLSI--PENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85 (259)
T ss_pred ceEEEeeEEEEECC---eeeEEeeEEEE--cCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc
Confidence 47999999999975 57999999999 58999999999999999999999999751000 1467621
Q ss_pred -------eccceecccccC-----CCchhHHHHhhCCCc-c------------------------ccccchHHHHHHHHH
Q 003528 77 -------TTKGIWMARCAG-----IEPCTLIMDLEGTDG-R------------------------ERGEDDTAFEKQSAL 119 (813)
Q Consensus 77 -------~~~g~~~~~~~~-----~e~~~~vld~~g~~~-~------------------------e~~~~~~~~erQrv~ 119 (813)
...++..+.... .++..+.....+... . ........+|+||++
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~ 165 (259)
T PRK14274 86 VDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLC 165 (259)
T ss_pred cCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHH
Confidence 001222222111 112211111111100 0 000111224999999
Q ss_pred HHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEec
Q 003528 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (813)
Q Consensus 120 iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g 196 (813)
||++++ +++||||||++||+.. ...+.+++.++.+ +.|+|+||||++.+...+++++++ ++|+++..|
T Consensus 166 laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tiiivtH~~~~~~~~~d~i~~l-~~G~i~~~g 236 (259)
T PRK14274 166 IARALATNPDVLLMDEPTSALDPVS------TRKIEELILKLKE--KYTIVIVTHNMQQAARVSDQTAFF-YMGELVECN 236 (259)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHhc--CCEEEEEEcCHHHHHHhCCEEEEE-ECCEEEEEC
Confidence 999999 9999999999999999 9999999999853 689999999999877666655555 459999999
Q ss_pred CcccccCC
Q 003528 197 PKPQAHME 204 (813)
Q Consensus 197 ~~~e~~~~ 204 (813)
++.+++.+
T Consensus 237 ~~~~~~~~ 244 (259)
T PRK14274 237 DTNKMFSN 244 (259)
T ss_pred CHHHHhhC
Confidence 88776543
No 171
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.91 E-value=2.2e-24 Score=226.53 Aligned_cols=177 Identities=18% Similarity=0.153 Sum_probs=129.7
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee------------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------------ 77 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~------------ 77 (813)
|+++|++++|++ ..+|+++||++ .+|++++|+||||||||||+++|+|+.+ |.+|+..-
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~i~G~~~----~~~G~i~i~g~~~~~~~~~~ 71 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEV--PTGSLVALLGPSGSGKSTLLRIIAGLEQ----PDSGRIRLNGQDATRVHARD 71 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCCC----CCceEEEECCEEcCcCChhh
Confidence 478999999976 67999999999 5899999999999999999999999987 88897310
Q ss_pred -ccceecccccCCCchhHHHHhh-------CCCccccc--------------------cchHHHHHHHHHHHHHHH---h
Q 003528 78 -TKGIWMARCAGIEPCTLIMDLE-------GTDGRERG--------------------EDDTAFEKQSALFALAVS---D 126 (813)
Q Consensus 78 -~~g~~~~~~~~~e~~~~vld~~-------g~~~~e~~--------------------~~~~~~erQrv~iA~ALa---d 126 (813)
..++..+. ....+...+.++. +....... .....+|+||++||++++ +
T Consensus 72 ~~i~~~~q~-~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ 150 (237)
T TIGR00968 72 RKIGFVFQH-YALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQ 150 (237)
T ss_pred cCEEEEecC-hhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 01122221 1111111222222 11100000 001123999999999999 9
Q ss_pred HhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccccC
Q 003528 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (813)
Q Consensus 127 vLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~~ 203 (813)
++|+||||++||+.+ ...+.+.+.++.++.+.|+|++||+++.+...+++++++. +|+++..++..+...
T Consensus 151 llllDEP~~~LD~~~------~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~-~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 151 VLLLDEPFGALDAKV------RKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMS-NGKIEQIGSPDEVYD 220 (237)
T ss_pred EEEEcCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEE-CCEEEEecCHHHHHc
Confidence 999999999999999 9999999999876558999999999998776566555554 599999888766543
No 172
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=3e-24 Score=224.39 Aligned_cols=174 Identities=16% Similarity=0.122 Sum_probs=127.9
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee------------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------------ 77 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~------------ 77 (813)
|+++|++++|++. ...+++++||++ .+|++++|+||||||||||+++|+|+.+ |++|+..-
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~ 73 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDI--PAGETVALVGPSGSGKSTLVNLIPRFYD----VDSGRILIDGHDVRDYTLAS 73 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhcccc----CCCCEEEECCEEhhhCCHHH
Confidence 5789999999652 137999999999 5899999999999999999999999998 88997310
Q ss_pred ---ccceecccccCCCchhHHHHhhCCCcc--------------------------------ccccchHHHHHHHHHHHH
Q 003528 78 ---TKGIWMARCAGIEPCTLIMDLEGTDGR--------------------------------ERGEDDTAFEKQSALFAL 122 (813)
Q Consensus 78 ---~~g~~~~~~~~~e~~~~vld~~g~~~~--------------------------------e~~~~~~~~erQrv~iA~ 122 (813)
..+..++.. ...+ ..+.++...... ........+|+||++||+
T Consensus 74 ~~~~i~~~~q~~-~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~ 151 (234)
T cd03251 74 LRRQIGLVSQDV-FLFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIAR 151 (234)
T ss_pred HHhhEEEeCCCC-eecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHH
Confidence 012222221 1111 133333321100 001112234999999999
Q ss_pred HHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcc
Q 003528 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (813)
Q Consensus 123 ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~ 199 (813)
|++ +++||||||++||+.. ...+.+.+.++. + +.|||++|||++.+.. ++ .++++++|+++..+++.
T Consensus 152 al~~~p~lllLDEP~~~LD~~~------~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d-~v~~l~~G~i~~~~~~~ 221 (234)
T cd03251 152 ALLKDPPILILDEATSALDTES------ERLVQAALERLM-K-NRTTFVIAHRLSTIEN-AD-RIVVLEDGKIVERGTHE 221 (234)
T ss_pred HHhcCCCEEEEeCccccCCHHH------HHHHHHHHHHhc-C-CCEEEEEecCHHHHhh-CC-EEEEecCCeEeeeCCHH
Confidence 999 9999999999999999 999999999986 3 7899999999988864 54 45555559999888766
Q ss_pred ccc
Q 003528 200 QAH 202 (813)
Q Consensus 200 e~~ 202 (813)
++.
T Consensus 222 ~~~ 224 (234)
T cd03251 222 ELL 224 (234)
T ss_pred HHH
Confidence 543
No 173
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.91 E-value=2.8e-24 Score=220.17 Aligned_cols=166 Identities=17% Similarity=0.108 Sum_probs=124.8
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCCCCCCCeeeec---------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN--FREMDAFKGRSQTT--------- 78 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~--~~~m~p~sG~~q~~--------- 78 (813)
|+++|++++|++ ..+++++||++ .+|++++|+|+||||||||+++|+|+. . |++|+..-.
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~----p~~G~i~~~g~~~~~~~~ 71 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTI--KKGEVHALMGPNGSGKSTLAKTIMGHPKYE----VTEGEILFKGEDITDLPP 71 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEE--CCCcEEEEECCCCCCHHHHHHHHhCCCcCC----CCccEEEECCEECCcCCH
Confidence 478999999975 67999999999 589999999999999999999999994 4 788873100
Q ss_pred -----c-ceecccccCCCchhHHHHhhCCCccccccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHH
Q 003528 79 -----K-GIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLK 149 (813)
Q Consensus 79 -----~-g~~~~~~~~~e~~~~vld~~g~~~~e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~ 149 (813)
. ..++++.....+...+.++.. ........+|+||++||+|++ +++|+||||++||+.. ..
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~~~~~~l~----~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~------~~ 141 (200)
T cd03217 72 EERARLGIFLAFQYPPEIPGVKNADFLR----YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDA------LR 141 (200)
T ss_pred HHHhhCcEEEeecChhhccCccHHHHHh----hccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH------HH
Confidence 0 011111111112222222220 111234567999999999999 9999999999999999 99
Q ss_pred HHHHHHHHhhcCCCceEEEEeecCCCccc-ccCcceeeecCCeEEEec
Q 003528 150 TVFQVMMRLFSPRKTTLMFVIRDKTRTPL-ENLEPVLREDIQKIWDSV 196 (813)
Q Consensus 150 ~v~ell~~L~~~~g~TIL~VtHD~~~~~~-~~~~~vll~~~GkI~~~g 196 (813)
.+.+++.++.++ +.|+|++||+++.+.. .+++.+++. .|+++..|
T Consensus 142 ~l~~~L~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l~-~G~i~~~~ 187 (200)
T cd03217 142 LVAEVINKLREE-GKSVLIITHYQRLLDYIKPDRVHVLY-DGRIVKSG 187 (200)
T ss_pred HHHHHHHHHHHC-CCEEEEEecCHHHHHHhhCCEEEEEE-CCEEEEEc
Confidence 999999998754 8999999999987764 455555555 59999887
No 174
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.91 E-value=1.8e-24 Score=227.16 Aligned_cols=159 Identities=13% Similarity=0.085 Sum_probs=115.2
Q ss_pred cceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee--------------ccceecccccCCC
Q 003528 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT--------------TKGIWMARCAGIE 90 (813)
Q Consensus 25 ~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~--------------~~g~~~~~~~~~e 90 (813)
+.+|+++||++ .+|++++|+|+|||||||||++|+|+.+ |++|+..- ..++++++.....
T Consensus 34 ~~il~~vs~~i--~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (236)
T cd03267 34 VEALKGISFTI--EKGEIVGFIGPNGAGKTTTLKILSGLLQ----PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW 107 (236)
T ss_pred eeeeeceeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCcC----CCceEEEECCEEccccchhhcccEEEEcCCccccC
Confidence 46999999999 5899999999999999999999999997 88897320 1122232221111
Q ss_pred chhHHHHh-------hCCCcccc--------------------ccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCch
Q 003528 91 PCTLIMDL-------EGTDGRER--------------------GEDDTAFEKQSALFALAVS---DIVLINMWCHDIGRE 140 (813)
Q Consensus 91 ~~~~vld~-------~g~~~~e~--------------------~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~ 140 (813)
+...+.++ .+....+. ......+|+||++||+|++ ++|||||||++||+.
T Consensus 108 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 187 (236)
T cd03267 108 WDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVV 187 (236)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 11112221 12111100 0011123999999999999 999999999999999
Q ss_pred hhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEec
Q 003528 141 QAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (813)
Q Consensus 141 ~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g 196 (813)
. .+.+.+++.++.++.+.|||+||||++++...+++++++.+ |+++..|
T Consensus 188 ~------~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 188 A------QENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred H------HHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeC-CEEEecC
Confidence 9 99999999998765689999999999987766666666554 9987653
No 175
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.91 E-value=8e-25 Score=228.11 Aligned_cols=169 Identities=21% Similarity=0.157 Sum_probs=123.9
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccc---------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG--------- 80 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g--------- 80 (813)
+.+.+++++|++ +.+|+++||++ .+|++++|+||||||||||+++|+|+.+ |++|+..- .|
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~~----p~~G~i~~-~g~~~~~~~~~ 92 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEV--PRGERIGLIGRNGAGKSTLLRLLAGIYP----PDSGTVTV-RGRVSSLLGLG 92 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEE-CCEEchhhccc
Confidence 778888999877 68999999999 5899999999999999999999999987 89998421 11
Q ss_pred eec-ccccCCCchhHHHHhhCCCccc--------------------cccchHHHHHHHHHHHHHHH---hHhhhccCCCC
Q 003528 81 IWM-ARCAGIEPCTLIMDLEGTDGRE--------------------RGEDDTAFEKQSALFALAVS---DIVLINMWCHD 136 (813)
Q Consensus 81 ~~~-~~~~~~e~~~~vld~~g~~~~e--------------------~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsg 136 (813)
..+ ...+..++..+.....+....+ .......+|+||++||+|++ ++||+||||++
T Consensus 93 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~g 172 (224)
T cd03220 93 GGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAV 172 (224)
T ss_pred ccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 001 1111112221111111111100 00111224999999999999 99999999999
Q ss_pred CCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEec
Q 003528 137 IGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (813)
Q Consensus 137 LD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g 196 (813)
||+.. ...+.+.+.++.++ |.|||++|||++.+...+++++++. +|+++..|
T Consensus 173 LD~~~------~~~~~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~-~G~i~~~g 224 (224)
T cd03220 173 GDAAF------QEKCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVLE-KGKIRFDG 224 (224)
T ss_pred CCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEecC
Confidence 99999 99999999998765 8999999999988876666655554 59987654
No 176
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2e-24 Score=250.65 Aligned_cols=177 Identities=12% Similarity=0.096 Sum_probs=133.0
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCC--CCCeeee--------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA--FKGRSQT-------- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p--~sG~~q~-------- 77 (813)
+||+++|++++|++ ..+|+++||++ .+|++++|+||||||||||||+|+|+.+ | ++|++.-
T Consensus 4 ~~l~~~nl~~~~~~---~~il~~isl~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----~~~~~G~i~~~g~~~~~~ 74 (506)
T PRK13549 4 YLLEMKNITKTFGG---VKALDNVSLKV--RAGEIVSLCGENGAGKSTLMKVLSGVYP----HGTYEGEIIFEGEELQAS 74 (506)
T ss_pred ceEEEeeeEEEeCC---eEeecceeEEE--eCCeEEEEECCCCCCHHHHHHHHhCCCC----CCCCCeEEEECCEECCCC
Confidence 47999999999975 67999999999 5899999999999999999999999987 4 6887310
Q ss_pred --------ccceecccccCCCchhHHHHhhCCCc----------cc--------------------cccchHHHHHHHHH
Q 003528 78 --------TKGIWMARCAGIEPCTLIMDLEGTDG----------RE--------------------RGEDDTAFEKQSAL 119 (813)
Q Consensus 78 --------~~g~~~~~~~~~e~~~~vld~~g~~~----------~e--------------------~~~~~~~~erQrv~ 119 (813)
..+++++.. ...+...+.++..... .+ .......+||||++
T Consensus 75 ~~~~~~~~~i~~v~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~ 153 (506)
T PRK13549 75 NIRDTERAGIAIIHQEL-ALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVE 153 (506)
T ss_pred CHHHHHHCCeEEEEecc-ccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHH
Confidence 122333322 1122233333321110 00 00111123999999
Q ss_pred HHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEec
Q 003528 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (813)
Q Consensus 120 iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g 196 (813)
||+||+ ++|||||||++||+.. ...+++++.++.++ |.|||+||||++.+...+++++++.+ |+|+..|
T Consensus 154 la~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~-~~tvi~~tH~~~~~~~~~d~v~~l~~-G~i~~~~ 225 (506)
T PRK13549 154 IAKALNKQARLLILDEPTASLTESE------TAVLLDIIRDLKAH-GIACIYISHKLNEVKAISDTICVIRD-GRHIGTR 225 (506)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCcHHHHHHhcCEEEEEEC-CEEeeec
Confidence 999999 9999999999999999 99999999999754 89999999999988766666665555 9999998
Q ss_pred Cccccc
Q 003528 197 PKPQAH 202 (813)
Q Consensus 197 ~~~e~~ 202 (813)
++.+..
T Consensus 226 ~~~~~~ 231 (506)
T PRK13549 226 PAAGMT 231 (506)
T ss_pred ccccCC
Confidence 876653
No 177
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3e-24 Score=226.56 Aligned_cols=178 Identities=10% Similarity=0.086 Sum_probs=130.1
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee-----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----------- 76 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----------- 76 (813)
++|+++|+++.|++ ..+|+++||++ .+|++++|+||||||||||+++|+|+..+ ..|++|+..
T Consensus 1 ~~~~~~~l~~~~~~---~~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~~~~G~i~~~g~~i~~~~~ 74 (246)
T PRK14269 1 MIAKTTNLNLFYGK---KQALFDINMQI--EQNKITALIGASGCGKSTFLRCFNRMNDK-IAKIDGLVEIEGKDVKNQDV 74 (246)
T ss_pred CceeeeeeEEEECC---EeeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcccCC-CCCCceEEEECCEecccCCH
Confidence 36899999999975 67999999999 58999999999999999999999999731 015778721
Q ss_pred ----eccceecccccCCCchhHHHHhh---------------------------CCCc------cccccchHHHHHHHHH
Q 003528 77 ----TTKGIWMARCAGIEPCTLIMDLE---------------------------GTDG------RERGEDDTAFEKQSAL 119 (813)
Q Consensus 77 ----~~~g~~~~~~~~~e~~~~vld~~---------------------------g~~~------~e~~~~~~~~erQrv~ 119 (813)
...++.++... ..+ ..+.++. ++.. .........+|+||++
T Consensus 75 ~~~~~~i~~~~q~~~-l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 75 VALRKNVGMVFQQPN-VFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLC 152 (246)
T ss_pred HHHhhhEEEEecCCc-ccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHH
Confidence 01122333221 111 1222222 1110 0001112234999999
Q ss_pred HHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEec
Q 003528 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (813)
Q Consensus 120 iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g 196 (813)
||+|++ +++||||||++||+.. ...+.+.+.++. + ++|+|+||||++.+...+++++++.+ |+++..|
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~------~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~-G~i~~~g 223 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPIS------SGVIEELLKELS-H-NLSMIMVTHNMQQGKRVADYTAFFHL-GELIEFG 223 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHh-C-CCEEEEEecCHHHHHhhCcEEEEEEC-CEEEEEC
Confidence 999999 9999999999999999 999999999985 3 78999999999988766666555555 9999988
Q ss_pred Cccccc
Q 003528 197 PKPQAH 202 (813)
Q Consensus 197 ~~~e~~ 202 (813)
++.+.+
T Consensus 224 ~~~~~~ 229 (246)
T PRK14269 224 ESKEFF 229 (246)
T ss_pred CHHHHH
Confidence 876654
No 178
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.9e-24 Score=226.09 Aligned_cols=176 Identities=15% Similarity=0.111 Sum_probs=129.3
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee-------------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------- 76 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------- 76 (813)
|.++|++++|++ +.+++++||++ .+|++++|+|+||||||||+++|+|+.+ |..|+..
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i--~~Ge~~~i~G~nGsGKSTLl~~l~g~~~----~~~G~i~~~g~~~~~~~~~~ 71 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDI--KEGEFFTLLGPSGCGKTTLLRLIAGFET----PTSGEILLDGKDITNLPPHK 71 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEE--CCCCEEEEECCCCCCHHHHHHHHhcCCC----CCceEEEECCEEcCcCChhh
Confidence 468999999976 67999999999 5899999999999999999999999997 8888721
Q ss_pred eccceecccccCCCchhHHHHhh-------CCCcc--------------------ccccchHHHHHHHHHHHHHHH---h
Q 003528 77 TTKGIWMARCAGIEPCTLIMDLE-------GTDGR--------------------ERGEDDTAFEKQSALFALAVS---D 126 (813)
Q Consensus 77 ~~~g~~~~~~~~~e~~~~vld~~-------g~~~~--------------------e~~~~~~~~erQrv~iA~ALa---d 126 (813)
...++..+.. .......+.++. +.... ........+|+||++||+|++ +
T Consensus 72 ~~i~~~~q~~-~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ 150 (232)
T cd03300 72 RPVNTVFQNY-ALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPK 150 (232)
T ss_pred cceEEEeccc-ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 0112222221 111111222221 11100 000111223999999999999 9
Q ss_pred HhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccccc
Q 003528 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (813)
Q Consensus 127 vLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~ 202 (813)
++||||||+|||+.. .+.+.+++.++.++.|.|||++||+++.+...+++++++.+ |+++..++..+.+
T Consensus 151 llllDEP~~gLD~~~------~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~-G~~~~~~~~~~~~ 219 (232)
T cd03300 151 VLLLDEPLGALDLKL------RKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNK-GKIQQIGTPEEIY 219 (232)
T ss_pred EEEEcCCcccCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEEC-CEEEecCCHHHHH
Confidence 999999999999999 99999999998765589999999999887765666555555 9999888765543
No 179
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.91 E-value=1.4e-24 Score=223.27 Aligned_cols=166 Identities=19% Similarity=0.141 Sum_probs=119.7
Q ss_pred EEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-------------
Q 003528 11 QLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------------- 77 (813)
Q Consensus 11 el~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~------------- 77 (813)
+++|+++.|++. .+.+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i--~~G~~~~l~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~ 73 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTI--KKGEFVLIVGPNGSGKSTLLRLLNGLLG----PTSGEVLVDGKDLTKLSLKEL 73 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEE--cCCcEEEEECCCCCCHHHHHHHHhcCCC----CCCceEEECCEEcccCCHHHH
Confidence 478999999641 146999999999 5899999999999999999999999997 88897310
Q ss_pred --ccceecccccCCCchhHHHHhhC-------CCccc--------------------cccchHHHHHHHHHHHHHHH---
Q 003528 78 --TKGIWMARCAGIEPCTLIMDLEG-------TDGRE--------------------RGEDDTAFEKQSALFALAVS--- 125 (813)
Q Consensus 78 --~~g~~~~~~~~~e~~~~vld~~g-------~~~~e--------------------~~~~~~~~erQrv~iA~ALa--- 125 (813)
..++.++......+...+.++.. ..... .......+|+||++||+|++
T Consensus 74 ~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p 153 (211)
T cd03225 74 RRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDP 153 (211)
T ss_pred HhhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 11222222110011112222221 11000 01111223999999999999
Q ss_pred hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCe
Q 003528 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (813)
Q Consensus 126 dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~Gk 191 (813)
++|||||||++||+.. ...+.+.+.++.++ |.|||++|||++.+...+++++++.+ |+
T Consensus 154 ~llllDEPt~~LD~~~------~~~~~~~l~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~-G~ 211 (211)
T cd03225 154 DILLLDEPTAGLDPAG------RRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLED-GK 211 (211)
T ss_pred CEEEEcCCcccCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeC-CC
Confidence 9999999999999999 99999999999765 89999999999988766666665544 63
No 180
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3e-24 Score=227.06 Aligned_cols=177 Identities=16% Similarity=0.167 Sum_probs=130.1
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCC-----CCeee------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF-----KGRSQ------ 76 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~-----sG~~q------ 76 (813)
++|+++|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.. |. +|++.
T Consensus 3 ~~l~~~~l~~~~~~---~~il~~~s~~i--~~G~~~~i~G~nGsGKSTLl~~l~Gl~~----~~~~~~~~G~v~~~g~~~ 73 (251)
T PRK14249 3 PKIKIRGVNFFYHK---HQVLKNINMDF--PERQITAIIGPSGCGKSTLLRALNRMND----IVSGARLEGAVLLDNENI 73 (251)
T ss_pred ceEEEEEEEEEECC---eeEecceEEEE--cCCCEEEEECCCCCCHHHHHHHHhcccC----ccccCCcccEEEECCEEc
Confidence 47999999999975 67999999999 5899999999999999999999999987 54 47621
Q ss_pred -----------eccceecccccCCCchhHHHHhh-------CCCccc-------------------------cccchHHH
Q 003528 77 -----------TTKGIWMARCAGIEPCTLIMDLE-------GTDGRE-------------------------RGEDDTAF 113 (813)
Q Consensus 77 -----------~~~g~~~~~~~~~e~~~~vld~~-------g~~~~e-------------------------~~~~~~~~ 113 (813)
...++.++... ..+. .+.++. +....+ .......+
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~~~-~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 151 (251)
T PRK14249 74 YSPNLDVVNLRKRVGMVFQQPN-PFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGG 151 (251)
T ss_pred cccccChHHhhceEEEEecCCc-cCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHH
Confidence 01122222211 1111 222222 111000 00011224
Q ss_pred HHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCC
Q 003528 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (813)
Q Consensus 114 erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~G 190 (813)
|+||++||+|++ ++|||||||++||+.. ...+.+++.++. + +.|||+||||++.+...+++.+++. +|
T Consensus 152 q~qrv~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~-~-~~tilivsh~~~~~~~~~d~i~~l~-~G 222 (251)
T PRK14249 152 QQQRLCIARVLAIEPEVILMDEPCSALDPVS------TMRIEELMQELK-Q-NYTIAIVTHNMQQAARASDWTGFLL-TG 222 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHh-c-CCEEEEEeCCHHHHHhhCCEEEEEe-CC
Confidence 999999999999 9999999999999999 999999999984 3 7899999999998876566665554 49
Q ss_pred eEEEecCcccccCC
Q 003528 191 KIWDSVPKPQAHME 204 (813)
Q Consensus 191 kI~~~g~~~e~~~~ 204 (813)
++...|++.+++..
T Consensus 223 ~i~~~~~~~~~~~~ 236 (251)
T PRK14249 223 DLVEYGRTGEIFSR 236 (251)
T ss_pred eEEEeCCHHHHHhC
Confidence 99999987776544
No 181
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.91 E-value=1.8e-24 Score=251.72 Aligned_cols=176 Identities=16% Similarity=0.179 Sum_probs=129.2
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCCCCCCCeeeec---------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN--FREMDAFKGRSQTT--------- 78 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~--~~~m~p~sG~~q~~--------- 78 (813)
|+++|++++|++ +.+|+++||++ .+|++++|+|||||||||||++|+|+. . |++|++.-.
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~----p~~G~i~~~~~~~~~~~~ 71 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTI--EEGEVLGILGRSGAGKSVLMHVLRGMDQYE----PTSGRIIYHVALCEKCGY 71 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEE--cCCCEEEEECCCCCCHHHHHHHHhhcccCC----CCceEEEEeccccccccc
Confidence 578999999965 67999999999 589999999999999999999999996 4 677763210
Q ss_pred ---------------------------------------cceecccccC-------CCchhHHHHhhCCCcccc------
Q 003528 79 ---------------------------------------KGIWMARCAG-------IEPCTLIMDLEGTDGRER------ 106 (813)
Q Consensus 79 ---------------------------------------~g~~~~~~~~-------~e~~~~vld~~g~~~~e~------ 106 (813)
.+++++.... .+++.+.....+....+.
T Consensus 72 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~ 151 (520)
T TIGR03269 72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVD 151 (520)
T ss_pred cccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1222222111 112222222112211110
Q ss_pred --------------ccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEE
Q 003528 107 --------------GEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFV 169 (813)
Q Consensus 107 --------------~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~V 169 (813)
......+|||||+||+||+ ++|||||||++||+.. ...+++++.++.++.|.|||+|
T Consensus 152 ~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~~g~tviiv 225 (520)
T TIGR03269 152 LIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQT------AKLVHNALEEAVKASGISMVLT 225 (520)
T ss_pred HHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHH------HHHHHHHHHHHHHhcCcEEEEE
Confidence 0111223999999999999 9999999999999999 9999999999976568999999
Q ss_pred eecCCCcccccCcceeeecCCeEEEecCcccc
Q 003528 170 IRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (813)
Q Consensus 170 tHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~ 201 (813)
|||++.+...+++++++.+ |+|+..|++.++
T Consensus 226 tHd~~~~~~~~d~i~~l~~-G~i~~~g~~~~~ 256 (520)
T TIGR03269 226 SHWPEVIEDLSDKAIWLEN-GEIKEEGTPDEV 256 (520)
T ss_pred eCCHHHHHHhcCEEEEEeC-CEEeeecCHHHH
Confidence 9999988766666666555 999888766553
No 182
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.3e-24 Score=227.82 Aligned_cols=182 Identities=16% Similarity=0.190 Sum_probs=130.1
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCCeeee----------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFRE-MDAFKGRSQT---------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~-m~p~sG~~q~---------- 77 (813)
+|+++|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+..+. ..|++|++.-
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~ 78 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNI--EPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV 78 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEE--cCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc
Confidence 6999999999976 57999999999 589999999999999999999999998510 0025786310
Q ss_pred -------ccceecccccC------CCchhHHHHhhCC-Ccc---c---------------------cccchHHHHHHHHH
Q 003528 78 -------TKGIWMARCAG------IEPCTLIMDLEGT-DGR---E---------------------RGEDDTAFEKQSAL 119 (813)
Q Consensus 78 -------~~g~~~~~~~~------~e~~~~vld~~g~-~~~---e---------------------~~~~~~~~erQrv~ 119 (813)
..++.++.... .++..+.....+. ... + .......+|+||++
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 158 (258)
T PRK14241 79 DPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLC 158 (258)
T ss_pred ChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 01222222111 1122111111111 000 0 00111224999999
Q ss_pred HHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeee-----cCCe
Q 003528 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE-----DIQK 191 (813)
Q Consensus 120 iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~-----~~Gk 191 (813)
||+|++ ++|||||||++||+.. ...+.+++.++.+ +.|||+||||++.+...+++++++. ++|+
T Consensus 159 laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~ 230 (258)
T PRK14241 159 IARAIAVEPDVLLMDEPCSALDPIS------TLAIEDLINELKQ--DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGR 230 (258)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHhc--CCEEEEEecCHHHHHHhCCEEEEEecccCCCCce
Confidence 999999 9999999999999999 9999999999853 5899999999998876677666665 3599
Q ss_pred EEEecCcccccC
Q 003528 192 IWDSVPKPQAHM 203 (813)
Q Consensus 192 I~~~g~~~e~~~ 203 (813)
|+..|++.+++.
T Consensus 231 i~~~~~~~~~~~ 242 (258)
T PRK14241 231 LVEIDDTEKIFS 242 (258)
T ss_pred EEecCCHHHHHh
Confidence 999988776543
No 183
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.2e-24 Score=226.75 Aligned_cols=181 Identities=14% Similarity=0.122 Sum_probs=129.6
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcC---CCCCCCCCCCeeee-------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGT---NFREMDAFKGRSQT------- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl---~~~~m~p~sG~~q~------- 77 (813)
++|+++|+++.|+. ..+|+++||++ .+|++++|+||||||||||+++|+|+ .++ .+++|+..-
T Consensus 2 ~~l~~~~~~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~--~~~~G~i~~~g~~~~~ 74 (250)
T PRK14245 2 VKIDARDVNFWYGD---FHALKGISMEI--EEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPA--TRLEGEIRIDGRNIYD 74 (250)
T ss_pred cEEEEEEEEEEECC---EeEEeeeeEEE--eCCCEEEEECCCCCCHHHHHHHHhhhhcccCC--CCCceEEEECCEeccc
Confidence 57999999999976 67999999999 58999999999999999999999997 330 024686210
Q ss_pred ----------ccceecccccC-----CCchhHHHHhh-------------------CCCc------cccccchHHHHHHH
Q 003528 78 ----------TKGIWMARCAG-----IEPCTLIMDLE-------------------GTDG------RERGEDDTAFEKQS 117 (813)
Q Consensus 78 ----------~~g~~~~~~~~-----~e~~~~vld~~-------------------g~~~------~e~~~~~~~~erQr 117 (813)
..++..+.... .+++.+..... |+.. .........+|+||
T Consensus 75 ~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14245 75 KGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQR 154 (250)
T ss_pred ccccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHH
Confidence 01222222111 11122111111 1100 00011122349999
Q ss_pred HHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEE
Q 003528 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (813)
Q Consensus 118 v~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~ 194 (813)
++||+|++ ++|||||||++||+.. ...+.+.+.++. + +.|||+||||++.+...+++++++ ++|+++.
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~v~~l-~~G~~~~ 225 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPIS------TAKVEELIHELK-K-DYTIVIVTHNMQQAARVSDKTAFF-YMGEMVE 225 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhCCEEEEE-ECCEEEE
Confidence 99999999 9999999999999999 999999999984 3 789999999999887656655555 4599999
Q ss_pred ecCcccccCC
Q 003528 195 SVPKPQAHME 204 (813)
Q Consensus 195 ~g~~~e~~~~ 204 (813)
.|++.+++.+
T Consensus 226 ~~~~~~~~~~ 235 (250)
T PRK14245 226 YDDTKKIFTN 235 (250)
T ss_pred ECCHHHHhcC
Confidence 9988776543
No 184
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4e-24 Score=226.02 Aligned_cols=181 Identities=17% Similarity=0.169 Sum_probs=129.3
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCC---CCCeee----e---
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA---FKGRSQ----T--- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p---~sG~~q----~--- 77 (813)
++|+++|++++|++ ..+++++||++ .+|++++|+|||||||||||++|+|+... .| ++|++. .
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~~s~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~p~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14239 4 PILQVSDLSVYYNK---KKALNSVSLDF--YPNEITALIGPSGSGKSTLLRSINRMNDL--NPEVTITGSIVYNGHNIYS 76 (252)
T ss_pred ceEEEEeeEEEECC---eeeeeeeeEEE--cCCcEEEEECCCCCCHHHHHHHHhccccc--CCCCCccceEEECCEECcC
Confidence 37999999999975 57999999999 58999999999999999999999998420 14 467621 0
Q ss_pred ----------ccceecccccC-----CCchhHHHHhhCCCccc-------------------------cccchHHHHHHH
Q 003528 78 ----------TKGIWMARCAG-----IEPCTLIMDLEGTDGRE-------------------------RGEDDTAFEKQS 117 (813)
Q Consensus 78 ----------~~g~~~~~~~~-----~e~~~~vld~~g~~~~e-------------------------~~~~~~~~erQr 117 (813)
..+++++.... .+++.+.....+..... .......+|+||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14239 77 PRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQR 156 (252)
T ss_pred cccchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHH
Confidence 11222222111 11222111111111000 001112249999
Q ss_pred HHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEE
Q 003528 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (813)
Q Consensus 118 v~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~ 194 (813)
++||+|++ ++|||||||++||+.. ...+.+++.++.+ +.|||++|||++.+...+++++++. +|+++.
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~-~G~i~~ 227 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPIS------AGKIEETLLGLKD--DYTMLLVTRSMQQASRISDRTGFFL-DGDLIE 227 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHH------HHHHHHHHHHHhh--CCeEEEEECCHHHHHHhCCEEEEEE-CCEEEE
Confidence 99999999 9999999999999999 9999999999853 5899999999988776566555555 499999
Q ss_pred ecCcccccCC
Q 003528 195 SVPKPQAHME 204 (813)
Q Consensus 195 ~g~~~e~~~~ 204 (813)
.|++.+++..
T Consensus 228 ~g~~~~~~~~ 237 (252)
T PRK14239 228 YNDTKQMFMN 237 (252)
T ss_pred eCCHHHHHhC
Confidence 9988776543
No 185
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.1e-24 Score=226.61 Aligned_cols=179 Identities=15% Similarity=0.125 Sum_probs=128.9
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCCeeee---------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFRE-MDAFKGRSQT--------- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~-m~p~sG~~q~--------- 77 (813)
++|++.|+++.|++ +.+|+++||++ .+|++++|+||||||||||+++|+|+.++. +.|++|+..-
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 76 (249)
T PRK14253 2 NKFNIENLDLFYGE---NQALKSINLPI--PARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI 76 (249)
T ss_pred CeEEEeccEEEECC---eeeeecceEEe--cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccccc
Confidence 47999999999975 67999999999 589999999999999999999999998611 0124676210
Q ss_pred -------ccceecccccCCCchhHHHHhh-------CCCcc-c------------------------cccchHHHHHHHH
Q 003528 78 -------TKGIWMARCAGIEPCTLIMDLE-------GTDGR-E------------------------RGEDDTAFEKQSA 118 (813)
Q Consensus 78 -------~~g~~~~~~~~~e~~~~vld~~-------g~~~~-e------------------------~~~~~~~~erQrv 118 (813)
..++.++... ..+ ..+.++. +.... . .......+|+||+
T Consensus 77 ~~~~~~~~i~~~~q~~~-~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv 154 (249)
T PRK14253 77 DVADLRIKVGMVFQKPN-PFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRL 154 (249)
T ss_pred chHHHHhheeEEecCCC-cCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHH
Confidence 0122222211 111 1222221 11100 0 0001122499999
Q ss_pred HHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEe
Q 003528 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (813)
Q Consensus 119 ~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~ 195 (813)
+||+|++ ++||+||||++||+.. ...+.+++.++.+ +.|||+|||+++.+...+++.+++.+ |+|+..
T Consensus 155 ~laral~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~--~~tii~~sh~~~~~~~~~d~i~~l~~-G~i~~~ 225 (249)
T PRK14253 155 CIARTIAMEPDVILMDEPTSALDPIA------THKIEELMEELKK--NYTIVIVTHSMQQARRISDRTAFFLM-GELVEH 225 (249)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHhc--CCeEEEEecCHHHHHHhCCEEEEEEC-CEEEEe
Confidence 9999999 9999999999999999 9999999999864 58999999999988766665555555 999998
Q ss_pred cCccccc
Q 003528 196 VPKPQAH 202 (813)
Q Consensus 196 g~~~e~~ 202 (813)
|++.++.
T Consensus 226 g~~~~~~ 232 (249)
T PRK14253 226 DDTQVIF 232 (249)
T ss_pred CCHHHHH
Confidence 8766543
No 186
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=4.5e-24 Score=222.29 Aligned_cols=173 Identities=19% Similarity=0.197 Sum_probs=126.7
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-----------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----------- 77 (813)
.|+++|++++|++. ..+++++||++ .+|++++|+|||||||||||++|+|+.+ |.+|++.-
T Consensus 2 ~l~~~~l~~~~~~~--~~~l~~isl~i--~~G~~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~ 73 (229)
T cd03254 2 EIEFENVNFSYDEK--KPVLKDINFSI--KPGETVAIVGPTGAGKTTLINLLMRFYD----PQKGQILIDGIDIRDISRK 73 (229)
T ss_pred eEEEEEEEEecCCC--CccccceEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCcC----CCCCEEEECCEeHHHcCHH
Confidence 37899999999642 46999999999 5899999999999999999999999997 88897310
Q ss_pred ----ccceecccccCCCchhHHHHhhCCCcc----c----------------------------cccchHHHHHHHHHHH
Q 003528 78 ----TKGIWMARCAGIEPCTLIMDLEGTDGR----E----------------------------RGEDDTAFEKQSALFA 121 (813)
Q Consensus 78 ----~~g~~~~~~~~~e~~~~vld~~g~~~~----e----------------------------~~~~~~~~erQrv~iA 121 (813)
..++.++.. ...+. .+.++...... . .......+|+||++||
T Consensus 74 ~~~~~i~~~~q~~-~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la 151 (229)
T cd03254 74 SLRSMIGVVLQDT-FLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIA 151 (229)
T ss_pred HHhhhEEEecCCc-hhhhh-HHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHH
Confidence 012222221 11111 23333221100 0 0011223599999999
Q ss_pred HHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCc
Q 003528 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (813)
Q Consensus 122 ~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~ 198 (813)
+||+ ++|||||||++||+.. .+.+++.+.++. + +.|||+|||+++.+. .++++ +++++|++...++.
T Consensus 152 ~al~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~-~-~~tii~~sh~~~~~~-~~d~i-~~l~~g~~~~~~~~ 221 (229)
T cd03254 152 RAMLRDPKILILDEATSNIDTET------EKLIQEALEKLM-K-GRTSIIIAHRLSTIK-NADKI-LVLDDGKIIEEGTH 221 (229)
T ss_pred HHHhcCCCEEEEeCccccCCHHH------HHHHHHHHHHhc-C-CCEEEEEecCHHHHh-hCCEE-EEEeCCeEEEeCCH
Confidence 9999 9999999999999999 999999999985 3 899999999998876 35444 44555999887765
Q ss_pred ccc
Q 003528 199 PQA 201 (813)
Q Consensus 199 ~e~ 201 (813)
.++
T Consensus 222 ~~~ 224 (229)
T cd03254 222 DEL 224 (229)
T ss_pred HHH
Confidence 443
No 187
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.5e-24 Score=227.96 Aligned_cols=181 Identities=14% Similarity=0.127 Sum_probs=130.2
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCCeeee--------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFRE-MDAFKGRSQT-------- 77 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~-m~p~sG~~q~-------- 77 (813)
..+|+++|+++.|++ ..+|+++||++ .+|++++|+||||||||||+++|+|+.... -.|++|+..-
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~ 85 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDI--AKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTP 85 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEE--cCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccc
Confidence 347999999999975 57999999999 589999999999999999999999997410 0146786210
Q ss_pred ---------ccceecccccCCCchhHHHHhhCC--------Ccc------------------------ccccchHHHHHH
Q 003528 78 ---------TKGIWMARCAGIEPCTLIMDLEGT--------DGR------------------------ERGEDDTAFEKQ 116 (813)
Q Consensus 78 ---------~~g~~~~~~~~~e~~~~vld~~g~--------~~~------------------------e~~~~~~~~erQ 116 (813)
..++.++... ..+ ..+.++... ... ........+|+|
T Consensus 86 ~~~~~~~~~~i~~~~q~~~-~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 86 KQDIALLRAKVGMVFQKPT-PFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQ 163 (260)
T ss_pred ccchHHHhcceEEEecCCc-cCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHH
Confidence 1122222211 111 222222211 000 000112234999
Q ss_pred HHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEE
Q 003528 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (813)
Q Consensus 117 rv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~ 193 (813)
|++||+|++ ++|||||||++||+.. ...+.+.+.++. + +.|||++|||++.+...+++.+++. +|+++
T Consensus 164 rv~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~-~G~i~ 234 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLDEPCSALDPIS------TGRIEELITELK-Q-DYTVVIVTHNMQQAARCSDYTAFMY-LGELI 234 (260)
T ss_pred HHHHHHHHHCCCCEEEEcCCCccCCHHH------HHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEE-CCEEE
Confidence 999999999 9999999999999999 999999999985 3 6899999999988776566555555 49999
Q ss_pred EecCcccccC
Q 003528 194 DSVPKPQAHM 203 (813)
Q Consensus 194 ~~g~~~e~~~ 203 (813)
..|++.+++.
T Consensus 235 ~~g~~~~~~~ 244 (260)
T PRK10744 235 EFGNTDTIFT 244 (260)
T ss_pred EeCCHHHHHh
Confidence 9988776554
No 188
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.91 E-value=4.9e-24 Score=223.36 Aligned_cols=175 Identities=15% Similarity=0.116 Sum_probs=128.8
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee-------------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------- 76 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------- 76 (813)
|+++|+++.|+.. ...+++++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~ 73 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRI--KPGEVVGIVGRSGSGKSTLTKLIQRFYV----PENGRVLVDGHDLALADPAW 73 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCcC----CCCCEEEECCeehHhcCHHH
Confidence 4789999999642 256999999999 5899999999999999999999999997 8889731
Q ss_pred --eccceecccccCCCchhHHHHhhCCCc----c----------------------------ccccchHHHHHHHHHHHH
Q 003528 77 --TTKGIWMARCAGIEPCTLIMDLEGTDG----R----------------------------ERGEDDTAFEKQSALFAL 122 (813)
Q Consensus 77 --~~~g~~~~~~~~~e~~~~vld~~g~~~----~----------------------------e~~~~~~~~erQrv~iA~ 122 (813)
...+++++.. ...+ ..+.++..... . ........+||||++||+
T Consensus 74 ~~~~i~~~~q~~-~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 151 (237)
T cd03252 74 LRRQVGVVLQEN-VLFN-RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIAR 151 (237)
T ss_pred HhhcEEEEcCCc-hhcc-chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHH
Confidence 0122223322 1111 13333321110 0 001122234999999999
Q ss_pred HHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcc
Q 003528 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (813)
Q Consensus 123 ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~ 199 (813)
|++ ++|||||||++||+.. ...+.+.+.++. + |.|||++|||++.+. .+++++ +.++|+++..|++.
T Consensus 152 al~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~-~-~~tiii~sH~~~~~~-~~d~v~-~l~~G~i~~~~~~~ 221 (237)
T cd03252 152 ALIHNPRILIFDEATSALDYES------EHAIMRNMHDIC-A-GRTVIIIAHRLSTVK-NADRII-VMEKGRIVEQGSHD 221 (237)
T ss_pred HHhhCCCEEEEeCCcccCCHHH------HHHHHHHHHHhc-C-CCEEEEEeCCHHHHH-hCCEEE-EEECCEEEEEcCHH
Confidence 999 9999999999999999 999999999985 3 899999999998875 455444 45559999988876
Q ss_pred cccC
Q 003528 200 QAHM 203 (813)
Q Consensus 200 e~~~ 203 (813)
+++.
T Consensus 222 ~~~~ 225 (237)
T cd03252 222 ELLA 225 (237)
T ss_pred HHHh
Confidence 6543
No 189
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5e-24 Score=227.83 Aligned_cols=186 Identities=17% Similarity=0.142 Sum_probs=133.0
Q ss_pred CCCCccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCCeeee-----
Q 003528 4 GEECCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFRE-MDAFKGRSQT----- 77 (813)
Q Consensus 4 ~~~~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~-m~p~sG~~q~----- 77 (813)
+.+.++|+++|++++|++ +.+|+++||++ .+|++++|+|||||||||||++|+|+..+. -.|++|++.-
T Consensus 15 ~~~~~~l~~~nl~~~~~~---~~il~~vsl~i--~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~ 89 (267)
T PRK14237 15 PEEEIALSTKDLHVYYGK---KEAIKGIDMQF--EKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDI 89 (267)
T ss_pred CCCCeEEEEeeEEEEECC---eeeEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEc
Confidence 445568999999999965 68999999999 589999999999999999999999998510 0036786210
Q ss_pred ------------ccceecccccC-----CCchhHHHHhhCCCcc-c------------------------cccchHHHHH
Q 003528 78 ------------TKGIWMARCAG-----IEPCTLIMDLEGTDGR-E------------------------RGEDDTAFEK 115 (813)
Q Consensus 78 ------------~~g~~~~~~~~-----~e~~~~vld~~g~~~~-e------------------------~~~~~~~~er 115 (813)
..++.++.... .+++.+.....+.... . .......+|+
T Consensus 90 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 169 (267)
T PRK14237 90 NRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQ 169 (267)
T ss_pred ccccCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHH
Confidence 11222222111 1122211111111000 0 0011223499
Q ss_pred HHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeE
Q 003528 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (813)
Q Consensus 116 Qrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI 192 (813)
||++||+|++ ++|||||||++||+.. ...+.+++.++. + +.|||++||+++.+...+++++++.+ |++
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~-G~i 240 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPIS------TMQLEETMFELK-K-NYTIIIVTHNMQQAARASDYTAFFYL-GDL 240 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhcCEEEEEEC-CEE
Confidence 9999999999 9999999999999999 999999999985 3 68999999999988766666655554 999
Q ss_pred EEecCcccccC
Q 003528 193 WDSVPKPQAHM 203 (813)
Q Consensus 193 ~~~g~~~e~~~ 203 (813)
+..|++.+++.
T Consensus 241 ~~~g~~~~~~~ 251 (267)
T PRK14237 241 IEYDKTRNIFT 251 (267)
T ss_pred EEeCCHHHHhc
Confidence 99998877654
No 190
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.91 E-value=4.9e-24 Score=223.45 Aligned_cols=175 Identities=15% Similarity=0.078 Sum_probs=127.7
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee------------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------------ 77 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~------------ 77 (813)
|++.|+++.|++.....+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i--~~Ge~~~l~G~nGsGKSTLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~ 74 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTI--PPGKTVALVGSSGCGKSTVVSLLERFYD----PTSGEILLDGVDIRDLNLRW 74 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEe--cCCCEEEEEeCCCCCHHHHHHHHhccCC----CCCCEEEECCEehhhcCHHH
Confidence 47899999996421146999999999 5899999999999999999999999997 88997310
Q ss_pred ---ccceecccccCCCchhHHHHhhCCCcc----c----------------------------cccchHHHHHHHHHHHH
Q 003528 78 ---TKGIWMARCAGIEPCTLIMDLEGTDGR----E----------------------------RGEDDTAFEKQSALFAL 122 (813)
Q Consensus 78 ---~~g~~~~~~~~~e~~~~vld~~g~~~~----e----------------------------~~~~~~~~erQrv~iA~ 122 (813)
..++.++.. ...+ ..+.++...... . .......+|+||++||+
T Consensus 75 ~~~~i~~~~q~~-~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~ 152 (238)
T cd03249 75 LRSQIGLVSQEP-VLFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIAR 152 (238)
T ss_pred HHhhEEEECCch-hhhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHH
Confidence 112222221 1111 133333321100 0 00112334999999999
Q ss_pred HHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcc
Q 003528 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (813)
Q Consensus 123 ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~ 199 (813)
|++ ++|||||||++||+.. ...+.+.+.++. .|.|+|++|||++.+. .+++++++ ++|+++..++..
T Consensus 153 al~~~p~llllDEP~~gLD~~~------~~~l~~~l~~~~--~g~~vi~~sh~~~~~~-~~d~v~~l-~~G~i~~~~~~~ 222 (238)
T cd03249 153 ALLRNPKILLLDEATSALDAES------EKLVQEALDRAM--KGRTTIVIAHRLSTIR-NADLIAVL-QNGQVVEQGTHD 222 (238)
T ss_pred HHhcCCCEEEEeCccccCCHHH------HHHHHHHHHHhc--CCCEEEEEeCCHHHHh-hCCEEEEE-ECCEEEEeCCHH
Confidence 999 9999999999999999 999999999986 4899999999998886 55555555 559999888765
Q ss_pred ccc
Q 003528 200 QAH 202 (813)
Q Consensus 200 e~~ 202 (813)
++.
T Consensus 223 ~~~ 225 (238)
T cd03249 223 ELM 225 (238)
T ss_pred HHh
Confidence 543
No 191
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.4e-24 Score=225.61 Aligned_cols=181 Identities=13% Similarity=0.142 Sum_probs=127.9
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCCeee------e---
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFRE-MDAFKGRSQ------T--- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~-m~p~sG~~q------~--- 77 (813)
++|+++|+++.|++ ..+++++||++ .+|++++|+|||||||||||++|+|+..+. -.|++|+.. .
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~i~~~i--~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~ 76 (250)
T PRK14262 2 PIIEIENFSAYYGE---KKAVKNVTMKI--FKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQ 76 (250)
T ss_pred ceEEEEeeEEEeCC---ceeEeeeeEee--cCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccch
Confidence 47999999999975 67999999999 589999999999999999999999997510 002677621 0
Q ss_pred --------ccceecccccC-----CCchhHHHHhhCCCccc-------------------------cccchHHHHHHHHH
Q 003528 78 --------TKGIWMARCAG-----IEPCTLIMDLEGTDGRE-------------------------RGEDDTAFEKQSAL 119 (813)
Q Consensus 78 --------~~g~~~~~~~~-----~e~~~~vld~~g~~~~e-------------------------~~~~~~~~erQrv~ 119 (813)
..++.++.... .++..+.....+..... .......+|+||++
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~ 156 (250)
T PRK14262 77 LDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLC 156 (250)
T ss_pred hhHHHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHH
Confidence 11222222111 11121111111111000 00011123999999
Q ss_pred HHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEec
Q 003528 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (813)
Q Consensus 120 iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g 196 (813)
||+|++ ++||+||||++||+.+ ...+.+.+.++.+ +.|+|++|||++.+...+++++++. +|+++..|
T Consensus 157 la~al~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~--~~tili~sH~~~~~~~~~d~i~~l~-~G~i~~~g 227 (250)
T PRK14262 157 IARALAVEPEVILLDEPTSALDPIA------TQRIEKLLEELSE--NYTIVIVTHNIGQAIRIADYIAFMY-RGELIEYG 227 (250)
T ss_pred HHHHHhCCCCEEEEeCCccccCHHH------HHHHHHHHHHHhc--CcEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEec
Confidence 999999 9999999999999999 9999999999863 6899999999987765565555554 59999998
Q ss_pred Cccccc
Q 003528 197 PKPQAH 202 (813)
Q Consensus 197 ~~~e~~ 202 (813)
++.++.
T Consensus 228 ~~~~~~ 233 (250)
T PRK14262 228 PTREIV 233 (250)
T ss_pred CHHHHH
Confidence 876654
No 192
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=5.4e-24 Score=216.72 Aligned_cols=173 Identities=12% Similarity=0.090 Sum_probs=125.5
Q ss_pred cEEEEeeeEEecccc-ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----------
Q 003528 9 STQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~-~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---------- 77 (813)
.|+++|+++.|.+.. .+.+++++||++ .+|++++|+|||||||||||++|+|+.. ..|++|+..-
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~~~G~i~~~g~~~~~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYV--KPGTLTALMGESGAGKTTLLDVLAGRKT--AGVITGEILINGRPLDKNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEE--eCCcEEEEECCCCCCHHHHHHHHhCCCc--CCCcceEEEECCEehHHHhh
Confidence 589999999996410 146999999999 5899999999999999999999999852 0267887321
Q ss_pred -ccceecccccCCCchhHHHHhhCCCccccccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHH
Q 003528 78 -TKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQ 153 (813)
Q Consensus 78 -~~g~~~~~~~~~e~~~~vld~~g~~~~e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~e 153 (813)
..+..++ .....+...+.++...... ......+|+||++||+|++ ++||+||||++||+.. ...+++
T Consensus 79 ~~i~~~~q-~~~~~~~~tv~~~l~~~~~--~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~------~~~l~~ 149 (192)
T cd03232 79 RSTGYVEQ-QDVHSPNLTVREALRFSAL--LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQA------AYNIVR 149 (192)
T ss_pred hceEEecc-cCccccCCcHHHHHHHHHH--HhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHH------HHHHHH
Confidence 1112222 1122222334443321100 0134567999999999999 9999999999999999 999999
Q ss_pred HHHHhhcCCCceEEEEeecCCC-cccccCcceeeecC-CeEEEec
Q 003528 154 VMMRLFSPRKTTLMFVIRDKTR-TPLENLEPVLREDI-QKIWDSV 196 (813)
Q Consensus 154 ll~~L~~~~g~TIL~VtHD~~~-~~~~~~~~vll~~~-GkI~~~g 196 (813)
.+.++.+. |.|+|++||+++. +...+++ ++.+++ |+++..|
T Consensus 150 ~l~~~~~~-~~tiiivtH~~~~~~~~~~d~-i~~l~~~g~i~~~g 192 (192)
T cd03232 150 FLKKLADS-GQAILCTIHQPSASIFEKFDR-LLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHc-CCEEEEEEcCChHHHHhhCCE-EEEEcCCCeEEeCC
Confidence 99998754 8999999999983 5544554 455555 8988654
No 193
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.8e-24 Score=228.70 Aligned_cols=181 Identities=15% Similarity=0.166 Sum_probs=129.7
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCCeee----e-----
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFR-EMDAFKGRSQ----T----- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~-~m~p~sG~~q----~----- 77 (813)
.+|++.|+++.|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+..+ ...|++|++. .
T Consensus 18 ~~l~~~nl~~~~~~---~~il~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 18 IKMRARDVSVFYGE---KQALFDVDLDI--PEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred ceEEEEeEEEEECC---EEEEEEEEEEE--cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 47999999999975 67999999999 58999999999999999999999999851 0013678721 0
Q ss_pred --------ccceecccccC-----CCchhHHHHhh--------------------CCCc------cccccchHHHHHHHH
Q 003528 78 --------TKGIWMARCAG-----IEPCTLIMDLE--------------------GTDG------RERGEDDTAFEKQSA 118 (813)
Q Consensus 78 --------~~g~~~~~~~~-----~e~~~~vld~~--------------------g~~~------~e~~~~~~~~erQrv 118 (813)
..+++++.... .+++.+..... |+.. .........+|+||+
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv 172 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRL 172 (267)
T ss_pred cchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHH
Confidence 01222222111 11121111100 1100 000111223499999
Q ss_pred HHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEe
Q 003528 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (813)
Q Consensus 119 ~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~ 195 (813)
+||+|++ ++|||||||++||+.. ...+.+++.++.+ +.|||+||||++.+...+++++++. +|+|+..
T Consensus 173 ~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~L~~l~~--~~tiiivtH~~~~~~~~~d~v~~l~-~G~i~~~ 243 (267)
T PRK14235 173 CIARAIAVSPEVILMDEPCSALDPIA------TAKVEELIDELRQ--NYTIVIVTHSMQQAARVSQRTAFFH-LGNLVEV 243 (267)
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHH------HHHHHHHHHHHhc--CCeEEEEEcCHHHHHhhCCEEEEEE-CCEEEEe
Confidence 9999999 9999999999999999 9999999999854 6899999999998876566555555 4999999
Q ss_pred cCccccc
Q 003528 196 VPKPQAH 202 (813)
Q Consensus 196 g~~~e~~ 202 (813)
|++.+++
T Consensus 244 g~~~~~~ 250 (267)
T PRK14235 244 GDTEKMF 250 (267)
T ss_pred CCHHHHH
Confidence 8776654
No 194
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=5e-24 Score=212.95 Aligned_cols=153 Identities=16% Similarity=0.106 Sum_probs=116.5
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeec-----------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT----------- 78 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~----------- 78 (813)
|+++|++++|++. ...+++++||++ .+|++++|+||||||||||+++|+|+.+ |.+|+..-.
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i--~~G~~~~l~G~nGsGKstLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~ 73 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTI--KPGEKVAIVGPSGSGKSTLLKLLLRLYD----PTSGEILIDGVDLRDLDLES 73 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEE--cCCCEEEEECCCCCCHHHHHHHHHcCCC----CCCCEEEECCEEhhhcCHHH
Confidence 4789999999751 127999999999 5899999999999999999999999998 888973210
Q ss_pred ----cceecccccCCCchhHHHHhhCCCccccccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHH
Q 003528 79 ----KGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTV 151 (813)
Q Consensus 79 ----~g~~~~~~~~~e~~~~vld~~g~~~~e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v 151 (813)
.++.++.. ...+ ..+.++. ...+|+||++||+|++ ++|||||||++||+.. ...+
T Consensus 74 ~~~~i~~~~~~~-~~~~-~t~~e~l----------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~------~~~l 135 (171)
T cd03228 74 LRKNIAYVPQDP-FLFS-GTIRENI----------LSGGQRQRIAIARALLRDPPILILDEATSALDPET------EALI 135 (171)
T ss_pred HHhhEEEEcCCc-hhcc-chHHHHh----------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHH------HHHH
Confidence 01111111 1111 1222221 4456999999999999 9999999999999999 9999
Q ss_pred HHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCe
Q 003528 152 FQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (813)
Q Consensus 152 ~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~Gk 191 (813)
.+++.++.+ ++|+|++|||++.+.. +++.+++ ++|+
T Consensus 136 ~~~l~~~~~--~~tii~~sh~~~~~~~-~d~~~~l-~~g~ 171 (171)
T cd03228 136 LEALRALAK--GKTVIVIAHRLSTIRD-ADRIIVL-DDGR 171 (171)
T ss_pred HHHHHHhcC--CCEEEEEecCHHHHHh-CCEEEEE-cCCC
Confidence 999999853 6899999999988874 5555544 4363
No 195
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3e-24 Score=254.90 Aligned_cols=184 Identities=14% Similarity=0.108 Sum_probs=137.1
Q ss_pred ccEEEEeeeEEeccc-c-------ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee--
Q 003528 8 CSTQLIDGDGTFNVS-G-------IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT-- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~-~-------~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~-- 77 (813)
++|+++|+++.|+.. + ...+|+++||++ .+|++++|+|+||||||||+++|+|+.+ |++|++.-
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i--~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~----p~~G~I~~~g 385 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDL--WPGETLSLVGESGSGKSTTGRALLRLVE----SQGGEIIFNG 385 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEE--cCCCEEEEECCCCCCHHHHHHHHHcCCC----CCCcEEEECC
Confidence 579999999999621 0 146899999999 5899999999999999999999999997 88888310
Q ss_pred ----------------ccceeccccc-CCCchhHHHHhh-------CCC-ccc---------------------cccchH
Q 003528 78 ----------------TKGIWMARCA-GIEPCTLIMDLE-------GTD-GRE---------------------RGEDDT 111 (813)
Q Consensus 78 ----------------~~g~~~~~~~-~~e~~~~vld~~-------g~~-~~e---------------------~~~~~~ 111 (813)
..+++++... ...+...+.+++ +.. ..+ ......
T Consensus 386 ~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LS 465 (623)
T PRK10261 386 QRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFS 465 (623)
T ss_pred EECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCC
Confidence 1233444321 122222222221 110 000 001112
Q ss_pred HHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeec
Q 003528 112 AFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (813)
Q Consensus 112 ~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~ 188 (813)
.+|||||+||+||+ ++||+||||++||+.. +..++++++++.++.|.||||||||++.+...+++++++.+
T Consensus 466 gGqrQRv~iAraL~~~p~llllDEPts~LD~~~------~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~ 539 (623)
T PRK10261 466 GGQRQRICIARALALNPKVIIADEAVSALDVSI------RGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYL 539 (623)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 23999999999999 9999999999999999 99999999999876689999999999988876766666655
Q ss_pred CCeEEEecCcccccCC
Q 003528 189 IQKIWDSVPKPQAHME 204 (813)
Q Consensus 189 ~GkI~~~g~~~e~~~~ 204 (813)
|+|+..|++.+++.+
T Consensus 540 -G~iv~~g~~~~i~~~ 554 (623)
T PRK10261 540 -GQIVEIGPRRAVFEN 554 (623)
T ss_pred -CEEEEecCHHHHhcC
Confidence 999999988887643
No 196
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.7e-24 Score=227.18 Aligned_cols=179 Identities=16% Similarity=0.134 Sum_probs=130.8
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCC-----CCeee----e-
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF-----KGRSQ----T- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~-----sG~~q----~- 77 (813)
++|+++|+++.|++ ..+|+++||++ .+|++++|+|+|||||||||++|+|+.+ |+ +|+.. .
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i--~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~----~~g~i~~~G~i~~~g~~i 76 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEI--YQSKVTAIIGPSGCGKSTFLKCLNRMNE----LESEVRVEGRVEFFNQNI 76 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEE--cCCcEEEEECCCCCCHHHHHHHHhcccC----CCCCccccceEEECCEEh
Confidence 47999999999975 57999999999 5899999999999999999999999987 53 56410 0
Q ss_pred ------------ccceecccccCCCchhHHHHhh-------CC-Cccc------------------------cccchHHH
Q 003528 78 ------------TKGIWMARCAGIEPCTLIMDLE-------GT-DGRE------------------------RGEDDTAF 113 (813)
Q Consensus 78 ------------~~g~~~~~~~~~e~~~~vld~~-------g~-~~~e------------------------~~~~~~~~ 113 (813)
..++.++.. ...+ ..+.++. +. +..+ .......+
T Consensus 77 ~~~~~~~~~~~~~i~~~~q~~-~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 154 (261)
T PRK14258 77 YERRVNLNRLRRQVSMVHPKP-NLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGG 154 (261)
T ss_pred hccccchHHhhccEEEEecCC-ccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHH
Confidence 011112211 1111 1222221 11 0000 00111224
Q ss_pred HHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecC-
Q 003528 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDI- 189 (813)
Q Consensus 114 erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~- 189 (813)
|+||++||++++ ++|||||||++||+.. ...+.+.+.++..+.|.|||+||||++.+...+++++++ ++
T Consensus 155 q~qrv~laral~~~p~vllLDEP~~~LD~~~------~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l-~~~ 227 (261)
T PRK14258 155 QQQRLCIARALAVKPKVLLMDEPCFGLDPIA------SMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFF-KGN 227 (261)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEE-ccC
Confidence 999999999999 9999999999999999 999999999986545899999999999887666555555 55
Q ss_pred ----CeEEEecCcccccCC
Q 003528 190 ----QKIWDSVPKPQAHME 204 (813)
Q Consensus 190 ----GkI~~~g~~~e~~~~ 204 (813)
|+++..|++++++.+
T Consensus 228 ~~~~G~i~~~~~~~~~~~~ 246 (261)
T PRK14258 228 ENRIGQLVEFGLTKKIFNS 246 (261)
T ss_pred CCcCceEEEeCCHHHHHhC
Confidence 999999988877554
No 197
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5.4e-24 Score=225.02 Aligned_cols=181 Identities=13% Similarity=0.140 Sum_probs=128.3
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCCeee----e-----
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFRE-MDAFKGRSQ----T----- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~-m~p~sG~~q----~----- 77 (813)
++|+++|++++|+. ..+|+++||++ .+|++++|+|+||||||||+++|+|+.++. ..|++|+.. .
T Consensus 3 ~~l~~~~l~~~~~~---~~~l~~~sl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~ 77 (251)
T PRK14251 3 NIISAKDVHLSYGN---YEALHGISLDF--EEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSK 77 (251)
T ss_pred ceEEEEeeEEEECC---eeeeeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccccc
Confidence 47999999999975 67999999999 589999999999999999999999998510 002567621 0
Q ss_pred --------ccceeccccc-----CCCchhHHHHhhCCCcc-------------------------ccccchHHHHHHHHH
Q 003528 78 --------TKGIWMARCA-----GIEPCTLIMDLEGTDGR-------------------------ERGEDDTAFEKQSAL 119 (813)
Q Consensus 78 --------~~g~~~~~~~-----~~e~~~~vld~~g~~~~-------------------------e~~~~~~~~erQrv~ 119 (813)
..++..+... ..++..+.....+.... ........+|+||++
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~ 157 (251)
T PRK14251 78 MDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRIC 157 (251)
T ss_pred chHHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHH
Confidence 0112222211 11122211111111000 000111224999999
Q ss_pred HHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEec
Q 003528 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (813)
Q Consensus 120 iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g 196 (813)
||+|++ +++||||||++||+.. ...+.+.+.++.+ +.|||+||||++.+...+++++++ ++|+++..+
T Consensus 158 laral~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~--~~tiiiisH~~~~~~~~~d~i~~l-~~G~i~~~~ 228 (251)
T PRK14251 158 IARALAVRPKVVLLDEPTSALDPIS------SSEIEETLMELKH--QYTFIMVTHNLQQAGRISDQTAFL-MNGDLIEAG 228 (251)
T ss_pred HHHHHhcCCCEEEecCCCccCCHHH------HHHHHHHHHHHHc--CCeEEEEECCHHHHHhhcCEEEEE-ECCEEEEeC
Confidence 999999 9999999999999999 9999999999853 689999999999877656555555 559999988
Q ss_pred Cccccc
Q 003528 197 PKPQAH 202 (813)
Q Consensus 197 ~~~e~~ 202 (813)
++.+.+
T Consensus 229 ~~~~~~ 234 (251)
T PRK14251 229 PTEEMF 234 (251)
T ss_pred CHHHHH
Confidence 776654
No 198
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=7.1e-24 Score=223.99 Aligned_cols=179 Identities=16% Similarity=0.130 Sum_probs=128.3
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCCeeee----------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFRE-MDAFKGRSQT---------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~-m~p~sG~~q~---------- 77 (813)
+|++.|+++.|++ ..+++++||++ .+|++++|+|||||||||||++|+|+.+.. -.+++|+..-
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14240 3 KISVKDLDLFYGD---FQALKKINLDI--EENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77 (250)
T ss_pred eEEEEEEEEEECC---ceeeecceEEE--cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 6899999999975 57999999999 589999999999999999999999986410 0015676210
Q ss_pred -------ccceecccccCCCchhHHHHhh-------CCCc-cc------------------------cccchHHHHHHHH
Q 003528 78 -------TKGIWMARCAGIEPCTLIMDLE-------GTDG-RE------------------------RGEDDTAFEKQSA 118 (813)
Q Consensus 78 -------~~g~~~~~~~~~e~~~~vld~~-------g~~~-~e------------------------~~~~~~~~erQrv 118 (813)
..+++++.. ...+ ..+.++. +... .+ .......+|+||+
T Consensus 78 ~~~~~~~~i~~~~q~~-~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 155 (250)
T PRK14240 78 DVNQLRKRVGMVFQQP-NPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRL 155 (250)
T ss_pred chHHHhccEEEEecCC-ccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHH
Confidence 112222221 1111 1222222 1100 00 0011122499999
Q ss_pred HHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEe
Q 003528 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (813)
Q Consensus 119 ~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~ 195 (813)
+||+|++ ++|||||||++||+.. ...+.+.+.++. + +.|||+||||++.+...+++++++.+ |+++..
T Consensus 156 ~laral~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~v~~l~~-G~i~~~ 226 (250)
T PRK14240 156 CIARALAVEPEVLLMDEPTSALDPIS------TLKIEELIQELK-K-DYTIVIVTHNMQQASRISDKTAFFLN-GEIVEF 226 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHh-c-CCeEEEEEeCHHHHHhhCCEEEEEEC-CEEEEe
Confidence 9999999 9999999999999999 999999999985 3 78999999999987766665555555 999999
Q ss_pred cCcccccC
Q 003528 196 VPKPQAHM 203 (813)
Q Consensus 196 g~~~e~~~ 203 (813)
+++.+++.
T Consensus 227 ~~~~~~~~ 234 (250)
T PRK14240 227 GDTVDLFT 234 (250)
T ss_pred CCHHHHHh
Confidence 88766543
No 199
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=5.2e-24 Score=223.35 Aligned_cols=175 Identities=17% Similarity=0.096 Sum_probs=129.0
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee------------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------------ 77 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~------------ 77 (813)
|.+.|+++.|++ . +++++||++ .+|++++|+|+||||||||+++|+|+.+ |++|+..-
T Consensus 1 l~~~~l~~~~~~---~-~l~~is~~i--~~Ge~~~i~G~nG~GKStLl~~l~G~~~----p~~G~v~i~g~~~~~~~~~~ 70 (235)
T cd03299 1 LKVENLSKDWKE---F-KLKNVSLEV--ERGDYFVILGPTGSGKSVLLETIAGFIK----PDSGKILLNGKDITNLPPEK 70 (235)
T ss_pred CeeEeEEEEeCC---c-eeeeeEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCcC----CCceEEEECCEEcCcCChhH
Confidence 468999999965 3 799999999 5899999999999999999999999997 88897310
Q ss_pred -ccceecccccCCCchhHHHHhh-------CCCcccc--------------------ccchHHHHHHHHHHHHHHH---h
Q 003528 78 -TKGIWMARCAGIEPCTLIMDLE-------GTDGRER--------------------GEDDTAFEKQSALFALAVS---D 126 (813)
Q Consensus 78 -~~g~~~~~~~~~e~~~~vld~~-------g~~~~e~--------------------~~~~~~~erQrv~iA~ALa---d 126 (813)
..++.++... ..+...+.++. +....+. ......+|+||++||+|++ +
T Consensus 71 ~~i~~~~q~~~-~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 149 (235)
T cd03299 71 RDISYVPQNYA-LFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPK 149 (235)
T ss_pred cCEEEEeecCc-cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCC
Confidence 1122222221 11111122211 1110000 0111223999999999999 9
Q ss_pred HhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccccc
Q 003528 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (813)
Q Consensus 127 vLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~ 202 (813)
++|+||||++||+.+ ...+.+.++++..+.|+|+|++||++..+...+++++++.+ |+++..|++.+..
T Consensus 150 llllDEPt~gLD~~~------~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~-G~i~~~~~~~~~~ 218 (235)
T cd03299 150 ILLLDEPFSALDVRT------KEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLN-GKLIQVGKPEEVF 218 (235)
T ss_pred EEEECCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEEC-CEEEEecCHHHHH
Confidence 999999999999999 99999999998765589999999999888766666666655 9999888765543
No 200
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=7.8e-24 Score=226.63 Aligned_cols=181 Identities=17% Similarity=0.136 Sum_probs=131.8
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCCeeee---------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFRE-MDAFKGRSQT--------- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~-m~p~sG~~q~--------- 77 (813)
.+|+++|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+.. ..|++|+..-
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDI--PRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEE--cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 47999999999976 67999999999 589999999999999999999999997510 0146776310
Q ss_pred --------ccceecccccCCCchhHHHHhhCC-------Cc--cc---------------------cccchHHHHHHHHH
Q 003528 78 --------TKGIWMARCAGIEPCTLIMDLEGT-------DG--RE---------------------RGEDDTAFEKQSAL 119 (813)
Q Consensus 78 --------~~g~~~~~~~~~e~~~~vld~~g~-------~~--~e---------------------~~~~~~~~erQrv~ 119 (813)
..+++++.. ...+ ..+.++... .. .+ .......+||||++
T Consensus 87 ~~~~~~~~~i~~v~q~~-~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~ 164 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQP-NPFP-KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLC 164 (269)
T ss_pred CCHHHHhhceEEEccCC-ccch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHH
Confidence 012222221 1111 123332211 00 00 00111224999999
Q ss_pred HHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeec--------
Q 003528 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED-------- 188 (813)
Q Consensus 120 iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~-------- 188 (813)
||+|++ ++|||||||++||+.. ...+.+++.++.+ +.|||++|||++.+...+++++++.+
T Consensus 165 laral~~~p~lllLDEPt~gLD~~~------~~~l~~~l~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~ 236 (269)
T PRK14259 165 IARTIAIEPEVILMDEPCSALDPIS------TLKIEETMHELKK--NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSG 236 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcCEEEEEeccccccccc
Confidence 999999 9999999999999999 9999999999853 68999999999988777777776664
Q ss_pred --CCeEEEecCcccccC
Q 003528 189 --IQKIWDSVPKPQAHM 203 (813)
Q Consensus 189 --~GkI~~~g~~~e~~~ 203 (813)
.|++++.|++.+++.
T Consensus 237 g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 237 GKVGYLVEFNETKKIFN 253 (269)
T ss_pred cccceEEEeCCHHHHHh
Confidence 367899888877654
No 201
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=6.3e-24 Score=224.77 Aligned_cols=182 Identities=15% Similarity=0.174 Sum_probs=129.6
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCC-CCCCeee----e-----
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD-AFKGRSQ----T----- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~-p~sG~~q----~----- 77 (813)
..|+++|++++|++ ..+|+++||++ .+|++++|+|+|||||||||++|+|+.+..-+ |++|+.. .
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 77 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDF--PENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRG 77 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEE--cCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccccc
Confidence 36999999999975 67999999999 58999999999999999999999999741000 2467621 0
Q ss_pred --------ccceecccccCCCchhHHHHhh-------CC-Ccc---c---------------------cccchHHHHHHH
Q 003528 78 --------TKGIWMARCAGIEPCTLIMDLE-------GT-DGR---E---------------------RGEDDTAFEKQS 117 (813)
Q Consensus 78 --------~~g~~~~~~~~~e~~~~vld~~-------g~-~~~---e---------------------~~~~~~~~erQr 117 (813)
..++.++.. ...+...+.++. +. ... + .......+|+||
T Consensus 78 ~~~~~~~~~i~~~~q~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14256 78 VDPVSIRRRVGMVFQKP-NPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQR 156 (252)
T ss_pred CChHHhhccEEEEecCC-CCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHH
Confidence 012222221 111111112211 10 000 0 011122349999
Q ss_pred HHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEE
Q 003528 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (813)
Q Consensus 118 v~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~ 194 (813)
++||+|++ ++|||||||+|||+.. ...+.++++++.+ +.|||+||||++.+...+++.+++. +|+|+.
T Consensus 157 l~laral~~~p~llllDEP~~gLD~~~------~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~-~G~i~~ 227 (252)
T PRK14256 157 LCIARTIAVKPEVILMDEPASALDPIS------TLKIEELIEELKE--KYTIIIVTHNMQQAARVSDYTAFFY-MGDLVE 227 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHh--CCcEEEEECCHHHHHhhCCEEEEEE-CCEEEE
Confidence 99999999 9999999999999999 9999999999964 5799999999998876666655554 499999
Q ss_pred ecCcccccCC
Q 003528 195 SVPKPQAHME 204 (813)
Q Consensus 195 ~g~~~e~~~~ 204 (813)
.|++.+.+.+
T Consensus 228 ~~~~~~~~~~ 237 (252)
T PRK14256 228 CGETKKIFTT 237 (252)
T ss_pred eCCHHHHHhC
Confidence 9987776543
No 202
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=6.9e-24 Score=224.20 Aligned_cols=179 Identities=16% Similarity=0.168 Sum_probs=128.6
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCC---CCCeee----e----
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA---FKGRSQ----T---- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p---~sG~~q----~---- 77 (813)
+|+++|+++.|++ ..+++++||++ .+|++++|+||||||||||+|+|+|+.++. | .+|+.. .
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~--~~~~~~G~i~~~g~~~~~~ 76 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDV--QRGTVNALIGPSGCGKTTFLRAINRMHDLT--PGARVTGRILLDGQDIYGP 76 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEE--cCCCEEEEECCCCCCHHHHHHHHhccCCCC--cCCCCceeEEECCEEcccC
Confidence 6999999999975 67999999999 589999999999999999999999998611 1 257621 0
Q ss_pred ---------ccceecccccC------CCchhHHHHhhCCCccc----c---------------------ccchHHHHHHH
Q 003528 78 ---------TKGIWMARCAG------IEPCTLIMDLEGTDGRE----R---------------------GEDDTAFEKQS 117 (813)
Q Consensus 78 ---------~~g~~~~~~~~------~e~~~~vld~~g~~~~e----~---------------------~~~~~~~erQr 117 (813)
..++.++.... .++..+.....+....+ . ......+|+||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14272 77 RVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQR 156 (252)
T ss_pred ccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHH
Confidence 11222222111 11221111111111100 0 00112249999
Q ss_pred HHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEE
Q 003528 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (813)
Q Consensus 118 v~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~ 194 (813)
++||+|++ ++||+||||++||+.. ...+.+.++++.+ ++|+|++||+++.+...+++++++.+ |+++.
T Consensus 157 v~laral~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~-G~i~~ 227 (252)
T PRK14272 157 LCIARALAVEPEILLMDEPTSALDPAS------TARIEDLMTDLKK--VTTIIIVTHNMHQAARVSDTTSFFLV-GDLVE 227 (252)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEEC-CEEEE
Confidence 99999999 9999999999999999 9999999999853 68999999999988765665555555 99999
Q ss_pred ecCcccccC
Q 003528 195 SVPKPQAHM 203 (813)
Q Consensus 195 ~g~~~e~~~ 203 (813)
.|++.+++.
T Consensus 228 ~~~~~~~~~ 236 (252)
T PRK14272 228 HGPTDQLFT 236 (252)
T ss_pred eCCHHHHHh
Confidence 988776543
No 203
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1e-23 Score=217.42 Aligned_cols=175 Identities=16% Similarity=0.151 Sum_probs=126.1
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-----ccce
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT-----TKGI 81 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~-----~~g~ 81 (813)
++.|+++|++.+|++ +.+|+++|.++ ..|+..+|+|||||||||||++++|-.+ |++|...- .++.
T Consensus 29 ~~li~l~~v~v~r~g---k~iL~~isW~V--~~ge~W~I~G~NGsGKTTLL~ll~~~~~----pssg~~~~~G~~~G~~~ 99 (257)
T COG1119 29 EPLIELKNVSVRRNG---KKILGDLSWQV--NPGEHWAIVGPNGAGKTTLLSLLTGEHP----PSSGDVTLLGRRFGKGE 99 (257)
T ss_pred cceEEecceEEEECC---Eeeccccceee--cCCCcEEEECCCCCCHHHHHHHHhcccC----CCCCceeeeeeeccCCc
Confidence 357999999999988 89999999999 5899999999999999999999999998 77776210 0000
Q ss_pred e---cccccC---------CCchhHHHHhh--------CCCccc------------------------cccchHHHHHHH
Q 003528 82 W---MARCAG---------IEPCTLIMDLE--------GTDGRE------------------------RGEDDTAFEKQS 117 (813)
Q Consensus 82 ~---~~~~~~---------~e~~~~vld~~--------g~~~~e------------------------~~~~~~~~erQr 117 (813)
+ +.+..+ +.....+.|++ |..... .-.....+||||
T Consensus 100 ~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rr 179 (257)
T COG1119 100 TIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRR 179 (257)
T ss_pred chHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHH
Confidence 0 000000 00011111111 111100 000111239999
Q ss_pred HHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcC-CCceEEEEeecCCCcccccCcceeeecCCeEE
Q 003528 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP-RKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (813)
Q Consensus 118 v~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~-~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~ 193 (813)
|+|||||+ ++||||||++|||..+ +..+.+.+.++... .+.++|||||..++++. |....++...|+++
T Consensus 180 vLiaRALv~~P~LLiLDEP~~GLDl~~------re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~-~~th~lll~~g~v~ 252 (257)
T COG1119 180 VLIARALVKDPELLILDEPAQGLDLIA------REQLLNRLEELAASPGAPALLFVTHHAEEIPP-CFTHRLLLKEGEVV 252 (257)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHH------HHHHHHHHHHHhcCCCCceEEEEEcchhhccc-ccceEEEeeCCcee
Confidence 99999999 9999999999999999 99999999998753 47899999999998885 45555555559999
Q ss_pred EecC
Q 003528 194 DSVP 197 (813)
Q Consensus 194 ~~g~ 197 (813)
..|.
T Consensus 253 ~~g~ 256 (257)
T COG1119 253 AQGK 256 (257)
T ss_pred eccc
Confidence 8763
No 204
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.90 E-value=6.8e-24 Score=235.74 Aligned_cols=173 Identities=16% Similarity=0.125 Sum_probs=128.0
Q ss_pred eeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----------------
Q 003528 14 DGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---------------- 77 (813)
Q Consensus 14 dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---------------- 77 (813)
|++++|++ .. + ++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.-
T Consensus 4 ~l~~~~~~---~~-~-~isl~i--~~Gei~~l~G~nGsGKSTLl~~iaGl~~----p~~G~I~~~g~~i~~~~~~~~~~~ 72 (354)
T TIGR02142 4 RFSKRLGD---FS-L-DADFTL--PGQGVTAIFGRSGSGKTTLIRLIAGLTR----PDEGEIVLNGRTLFDSRKGIFLPP 72 (354)
T ss_pred EEEEEECC---EE-E-EEEEEE--CCCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCEECccCccccccch
Confidence 89999965 33 4 899999 5899999999999999999999999997 88897310
Q ss_pred ---ccceecccccCCCchhHHHHhhCCC-----cccc--------------------ccchHHHHHHHHHHHHHHH---h
Q 003528 78 ---TKGIWMARCAGIEPCTLIMDLEGTD-----GRER--------------------GEDDTAFEKQSALFALAVS---D 126 (813)
Q Consensus 78 ---~~g~~~~~~~~~e~~~~vld~~g~~-----~~e~--------------------~~~~~~~erQrv~iA~ALa---d 126 (813)
..++.++. ....+...+.++.... ..+. ......+||||++||+||+ +
T Consensus 73 ~~~~i~~v~q~-~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~ 151 (354)
T TIGR02142 73 EKRRIGYVFQE-ARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPR 151 (354)
T ss_pred hhCCeEEEecC-CccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 01122222 1222223344433211 0000 0011123999999999999 9
Q ss_pred HhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccccCCc
Q 003528 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMET 205 (813)
Q Consensus 127 vLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~~~~ 205 (813)
+|||||||++||+.. ...+.+.++++.++.|.|+|+||||++++...+++++++.+ |+++..|++.+++...
T Consensus 152 lllLDEPts~LD~~~------~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~-G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 152 LLLMDEPLAALDDPR------KYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLED-GRVAAAGPIAEVWASP 223 (354)
T ss_pred EEEEcCCCcCCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeC-CEEEEECCHHHHhcCc
Confidence 999999999999999 99999999999776689999999999988766666555555 9999999888776543
No 205
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.90 E-value=6.8e-24 Score=219.06 Aligned_cols=169 Identities=18% Similarity=0.153 Sum_probs=124.2
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee------------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------------ 77 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~------------ 77 (813)
++++|+++.|.. .+.++||++ .+|++++|+||||||||||+++|+|+.+ |++|++.-
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~ 69 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNV--ADGEIVAIMGPSGAGKSTLLNLIAGFIE----PASGSIKVNDQSHTGLAPYQ 69 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEE--eCCcEEEEECCCCCCHHHHHHHHhcCCC----CCCcEEEECCEEcccCChhc
Confidence 478999999963 357999999 5899999999999999999999999997 88997311
Q ss_pred -ccceecccccCCCchhHHHHhhCCC--c----c-c---ccc-----------------chHHHHHHHHHHHHHHH---h
Q 003528 78 -TKGIWMARCAGIEPCTLIMDLEGTD--G----R-E---RGE-----------------DDTAFEKQSALFALAVS---D 126 (813)
Q Consensus 78 -~~g~~~~~~~~~e~~~~vld~~g~~--~----~-e---~~~-----------------~~~~~erQrv~iA~ALa---d 126 (813)
..++.++.. ...+...+.++.... . . . +.. ....+|+||++||+|++ +
T Consensus 70 ~~i~~v~q~~-~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 148 (213)
T TIGR01277 70 RPVSMLFQEN-NLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNP 148 (213)
T ss_pred cceEEEeccC-ccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 112222221 222222333333210 0 0 0 000 01113999999999999 9
Q ss_pred HhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecC
Q 003528 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (813)
Q Consensus 127 vLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~ 197 (813)
++|+||||++||+.. ...+++++.++.++.|.|||+|||+.+.+...+++.+++. +|+++..|.
T Consensus 149 llllDEPt~~LD~~~------~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~-~g~i~~~~~ 212 (213)
T TIGR01277 149 ILLLDEPFSALDPLL------REEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVS-QGKIKVVSD 212 (213)
T ss_pred EEEEcCCCccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEE-CCeEEEecC
Confidence 999999999999999 9999999999876558999999999988776566666555 599988763
No 206
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.90 E-value=5.3e-24 Score=243.19 Aligned_cols=181 Identities=17% Similarity=0.107 Sum_probs=130.9
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccce--eccc
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI--WMAR 85 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~--~~~~ 85 (813)
+|+.+.|+++.|++...+.+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..- .|. ....
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI--~~GEivgIiGpNGSGKSTLLkiLaGLl~----P~sGeI~I-~G~~~~i~~ 92 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEV--PEGEIVGIIGLNGSGKSTLSNLIAGVTM----PNKGTVDI-KGSAALIAI 92 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEE--eCCCEEEEEcCCCCCHHHHHHHHhCCCC----CCceEEEE-CCEeeeEEe
Confidence 3688888888886532246899999999 5899999999999999999999999997 88998421 110 0110
Q ss_pred ccCCCchhHHHHhh-------CCCccc--------------------cccchHHHHHHHHHHHHHHH---hHhhhccCCC
Q 003528 86 CAGIEPCTLIMDLE-------GTDGRE--------------------RGEDDTAFEKQSALFALAVS---DIVLINMWCH 135 (813)
Q Consensus 86 ~~~~e~~~~vld~~-------g~~~~e--------------------~~~~~~~~erQrv~iA~ALa---dvLLLDEPts 135 (813)
.....+...+.++. +....+ .......+||||++||+||+ ++|||||||+
T Consensus 93 ~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTs 172 (549)
T PRK13545 93 SSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALS 172 (549)
T ss_pred ccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 11111111222221 111100 01112234999999999999 9999999999
Q ss_pred CCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccccC
Q 003528 136 DIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (813)
Q Consensus 136 gLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~~ 203 (813)
+||+.. ...+++.+.++.+ .|.|||++|||++.+...|++++++.+ |+++..|++.+++.
T Consensus 173 gLD~~s------r~~LlelL~el~~-~G~TIIIVSHdl~~i~~l~DrIivL~~-GkIv~~G~~~el~~ 232 (549)
T PRK13545 173 VGDQTF------TKKCLDKMNEFKE-QGKTIFFISHSLSQVKSFCTKALWLHY-GQVKEYGDIKEVVD 232 (549)
T ss_pred cCCHHH------HHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence 999999 9999999999865 489999999999988766666665555 99999998776543
No 207
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.90 E-value=1.3e-23 Score=209.26 Aligned_cols=157 Identities=16% Similarity=0.065 Sum_probs=121.7
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----ccceeccc
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----TKGIWMAR 85 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----~~g~~~~~ 85 (813)
|+++|+++.|.+. +.+|+++||++ .+|++++|+||||||||||+++|+|+.+ |++|+..- ..+++.+.
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~~~~~i~~~~q~ 72 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEI--KPGDRLLITGPSGTGKSSLFRALAGLWP----WGSGRIGMPEGEDLLFLPQR 72 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEE--CCCCEEEEECCCCCCHHHHHHHHhcCCC----CCCceEEECCCceEEEECCC
Confidence 4789999999642 57999999999 5899999999999999999999999997 88998422 12333333
Q ss_pred ccCCCchhHHHHhhCCCccccccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCC
Q 003528 86 CAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPR 162 (813)
Q Consensus 86 ~~~~e~~~~vld~~g~~~~e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~ 162 (813)
. .. +...+.++.... ........|+||++||+|++ +++|+||||++||+.. ...+.+++.++
T Consensus 73 ~-~~-~~~tv~~nl~~~---~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~------~~~l~~~l~~~---- 137 (166)
T cd03223 73 P-YL-PLGTLREQLIYP---WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEES------EDRLYQLLKEL---- 137 (166)
T ss_pred C-cc-ccccHHHHhhcc---CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHH------HHHHHHHHHHh----
Confidence 2 12 223555554332 23445667999999999999 9999999999999999 99999999876
Q ss_pred CceEEEEeecCCCcccccCcceeeecCC
Q 003528 163 KTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (813)
Q Consensus 163 g~TIL~VtHD~~~~~~~~~~~vll~~~G 190 (813)
+.|+|++|||++... .+++++++.+.|
T Consensus 138 ~~tiiivsh~~~~~~-~~d~i~~l~~~~ 164 (166)
T cd03223 138 GITVISVGHRPSLWK-FHDRVLDLDGEG 164 (166)
T ss_pred CCEEEEEeCChhHHh-hCCEEEEEcCCC
Confidence 579999999997654 566666665534
No 208
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=9e-24 Score=225.78 Aligned_cols=182 Identities=12% Similarity=0.099 Sum_probs=129.2
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCCeeee---------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFRE-MDAFKGRSQT--------- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~-m~p~sG~~q~--------- 77 (813)
++|+++|++++|++ ..+|+++||++ .+|++++|+|+|||||||||++|+|+.... ..|++|+..-
T Consensus 20 ~~l~~~~l~~~~~~---~~il~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 94 (268)
T PRK14248 20 HILEVKDLSIYYGE---KRAVNDISMDI--EKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN 94 (268)
T ss_pred ceEEEEEEEEEeCC---ceeeeceEEEE--cCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence 47999999999975 67999999999 589999999999999999999999985200 0146776210
Q ss_pred --------ccceecccccC-----CCchhHHHHhhCCCcc-------------------------ccccchHHHHHHHHH
Q 003528 78 --------TKGIWMARCAG-----IEPCTLIMDLEGTDGR-------------------------ERGEDDTAFEKQSAL 119 (813)
Q Consensus 78 --------~~g~~~~~~~~-----~e~~~~vld~~g~~~~-------------------------e~~~~~~~~erQrv~ 119 (813)
..++.++.... .+++.+.....+.... ........+|+||++
T Consensus 95 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~ 174 (268)
T PRK14248 95 INVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLC 174 (268)
T ss_pred ccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHH
Confidence 11222222111 1111111111110000 000112224999999
Q ss_pred HHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEec
Q 003528 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (813)
Q Consensus 120 iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g 196 (813)
||+|++ ++|||||||++||+.. ...+.++++++.+ +.|||++|||++.+...+++++++. +|+++..|
T Consensus 175 laral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~--~~tiii~tH~~~~~~~~~d~v~~l~-~G~i~~~~ 245 (268)
T PRK14248 175 IARTLAMKPAVLLLDEPASALDPIS------NAKIEELITELKE--EYSIIIVTHNMQQALRVSDRTAFFL-NGDLVEYD 245 (268)
T ss_pred HHHHHhCCCCEEEEcCCCcccCHHH------HHHHHHHHHHHhc--CCEEEEEEeCHHHHHHhCCEEEEEE-CCEEEEeC
Confidence 999999 9999999999999999 9999999999854 5899999999988776666655555 49999998
Q ss_pred CcccccC
Q 003528 197 PKPQAHM 203 (813)
Q Consensus 197 ~~~e~~~ 203 (813)
++.+++.
T Consensus 246 ~~~~~~~ 252 (268)
T PRK14248 246 QTEQIFT 252 (268)
T ss_pred CHHHHHh
Confidence 8776554
No 209
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.90 E-value=1.5e-23 Score=221.58 Aligned_cols=175 Identities=17% Similarity=0.159 Sum_probs=127.0
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcC--CCCCCCCCCCeeee---------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGT--NFREMDAFKGRSQT--------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl--~~~~m~p~sG~~q~--------- 77 (813)
+|+++|+++.|++ ..+|+++||++ .+|++++|+|+||||||||+++|+|+ .+ |++|+..-
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~----~~~G~i~~~g~~~~~~~ 77 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSI--NKGEIHAIMGPNGSGKSTLSKVIAGHPAYK----ILEGDILFKGESILDLE 77 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEE--cCCcEEEEECCCCCCHHHHHHHHcCCCcCc----CCCceEEECCEEcccCC
Confidence 6999999999975 57999999999 58999999999999999999999998 34 78887210
Q ss_pred ----c-cc--eecccccC------CCchhH-------------------------HHHhhCCCcc---cccc-chHHHHH
Q 003528 78 ----T-KG--IWMARCAG------IEPCTL-------------------------IMDLEGTDGR---ERGE-DDTAFEK 115 (813)
Q Consensus 78 ----~-~g--~~~~~~~~------~e~~~~-------------------------vld~~g~~~~---e~~~-~~~~~er 115 (813)
. .+ ..++.... .++..+ .++..|+... .... ....+|+
T Consensus 78 ~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~ 157 (252)
T CHL00131 78 PEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEK 157 (252)
T ss_pred hhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHH
Confidence 0 01 11121110 011100 0111122100 0111 2344599
Q ss_pred HHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeE
Q 003528 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (813)
Q Consensus 116 Qrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI 192 (813)
||++||+|++ +++|+||||++||+.+ ...+.+++.++.+ .|.|||++|||++.+....+++++++++|++
T Consensus 158 qrv~la~al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~-~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i 230 (252)
T CHL00131 158 KRNEILQMALLDSELAILDETDSGLDIDA------LKIIAEGINKLMT-SENSIILITHYQRLLDYIKPDYVHVMQNGKI 230 (252)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHh-CCCEEEEEecCHHHHHhhhCCEEEEEeCCEE
Confidence 9999999999 9999999999999999 9999999999875 4899999999998876542455555555999
Q ss_pred EEecCcc
Q 003528 193 WDSVPKP 199 (813)
Q Consensus 193 ~~~g~~~ 199 (813)
+..|++.
T Consensus 231 ~~~~~~~ 237 (252)
T CHL00131 231 IKTGDAE 237 (252)
T ss_pred EEecChh
Confidence 9988765
No 210
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.90 E-value=6.4e-24 Score=247.67 Aligned_cols=186 Identities=10% Similarity=0.095 Sum_probs=133.1
Q ss_pred ccEEEEeeeEEeccc-cccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCCeee---------
Q 003528 8 CSTQLIDGDGTFNVS-GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFRE-MDAFKGRSQ--------- 76 (813)
Q Consensus 8 ~~Iel~dls~~y~~~-~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~-m~p~sG~~q--------- 76 (813)
++|+++|++++|+++ ....+|+++||++ .+|++++|+|||||||||||++|+|+.++. -.|++|+..
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i--~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~ 81 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQI--EAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHA 81 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEE--eCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccC
Confidence 379999999999631 1147999999999 589999999999999999999999999710 001578621
Q ss_pred ----------eccceecccccC-CCchhHHHHh--------hCCCccc-----------------------cccchHHHH
Q 003528 77 ----------TTKGIWMARCAG-IEPCTLIMDL--------EGTDGRE-----------------------RGEDDTAFE 114 (813)
Q Consensus 77 ----------~~~g~~~~~~~~-~e~~~~vld~--------~g~~~~e-----------------------~~~~~~~~e 114 (813)
...|++++.... ..+...+.++ .+....+ .......+|
T Consensus 82 ~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe 161 (529)
T PRK15134 82 SEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGE 161 (529)
T ss_pred CHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHH
Confidence 012344443210 1111111110 0111100 111222349
Q ss_pred HHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCe
Q 003528 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (813)
Q Consensus 115 rQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~Gk 191 (813)
||||+||+||+ ++|||||||++||+.. ...+++++.++.++.|.|||+||||++.+...+++++++.+ |+
T Consensus 162 ~qrv~iAraL~~~p~llllDEPt~~LD~~~------~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~-G~ 234 (529)
T PRK15134 162 RQRVMIAMALLTRPELLIADEPTTALDVSV------QAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQN-GR 234 (529)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCccCHHH------HHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEEC-CE
Confidence 99999999999 9999999999999999 99999999999765589999999999988766666666655 99
Q ss_pred EEEecCccccc
Q 003528 192 IWDSVPKPQAH 202 (813)
Q Consensus 192 I~~~g~~~e~~ 202 (813)
|+..|++.+++
T Consensus 235 i~~~g~~~~~~ 245 (529)
T PRK15134 235 CVEQNRAATLF 245 (529)
T ss_pred EEEeCCHHHHh
Confidence 99998876654
No 211
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=1.6e-23 Score=216.69 Aligned_cols=162 Identities=13% Similarity=0.064 Sum_probs=120.2
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---------- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---------- 77 (813)
++|+++|++++|++ ..+++++||++ .+|++++|+|+||||||||+++|+|+.+ |++|+..-
T Consensus 10 ~~l~~~~l~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~~----~~~G~i~~~g~~i~~~~~ 80 (214)
T PRK13543 10 PLLAAHALAFSRNE---EPVFGPLDFHV--DAGEALLVQGDNGAGKTTLLRVLAGLLH----VESGQIQIDGKTATRGDR 80 (214)
T ss_pred ceEEEeeEEEecCC---ceeeecceEEE--CCCCEEEEEcCCCCCHHHHHHHHhCCCC----CCCeeEEECCEEccchhh
Confidence 57999999999976 57999999999 5899999999999999999999999997 88897311
Q ss_pred --ccceecccccCCCchhHHHHhh-------CCCcccc-----------------ccchHHHHHHHHHHHHHHH---hHh
Q 003528 78 --TKGIWMARCAGIEPCTLIMDLE-------GTDGRER-----------------GEDDTAFEKQSALFALAVS---DIV 128 (813)
Q Consensus 78 --~~g~~~~~~~~~e~~~~vld~~-------g~~~~e~-----------------~~~~~~~erQrv~iA~ALa---dvL 128 (813)
..+ ++.+.....+...+.++. +....+. ......+|+||++||++++ ++|
T Consensus 81 ~~~i~-~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (214)
T PRK13543 81 SRFMA-YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLW 159 (214)
T ss_pred hhceE-EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 012 222221111111222221 1100000 0111223999999999999 999
Q ss_pred hhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceee
Q 003528 129 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 186 (813)
Q Consensus 129 LLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll 186 (813)
|+||||++||+.. .+.+.+.+.++.++ |.|+|++|||++.+...+++.+++
T Consensus 160 llDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~~~i~~l 210 (214)
T PRK13543 160 LLDEPYANLDLEG------ITLVNRMISAHLRG-GGAALVTTHGAYAAPPVRTRMLTL 210 (214)
T ss_pred EEeCCcccCCHHH------HHHHHHHHHHHHhC-CCEEEEEecChhhhhhhcceEEEE
Confidence 9999999999999 99999999988764 889999999999888766655443
No 212
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.3e-23 Score=219.88 Aligned_cols=172 Identities=17% Similarity=0.121 Sum_probs=126.7
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee------------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------------ 77 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~------------ 77 (813)
|+++|++++|++. ..+++++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i--~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~----~~~G~v~~~g~~~~~~~~~~ 72 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTI--PAGKKVAIVGPSGSGKSTILRLLFRFYD----VSSGSILIDGQDIREVTLDS 72 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcccC----CCCCEEEECCEEhhhCCHHH
Confidence 4789999999642 56999999999 5899999999999999999999999997 88997311
Q ss_pred ---ccceecccccCCCchhHHHHhhCCCcc--------------------------------ccccchHHHHHHHHHHHH
Q 003528 78 ---TKGIWMARCAGIEPCTLIMDLEGTDGR--------------------------------ERGEDDTAFEKQSALFAL 122 (813)
Q Consensus 78 ---~~g~~~~~~~~~e~~~~vld~~g~~~~--------------------------------e~~~~~~~~erQrv~iA~ 122 (813)
..++.++.. ...+ ..+.++...... ........+|+||++||+
T Consensus 73 ~~~~i~~~~q~~-~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~ 150 (236)
T cd03253 73 LRRAIGVVPQDT-VLFN-DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIAR 150 (236)
T ss_pred HHhhEEEECCCC-hhhc-chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHH
Confidence 012222221 1111 133333211100 001122335999999999
Q ss_pred HHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcc
Q 003528 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (813)
Q Consensus 123 ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~ 199 (813)
||+ ++|||||||++||+.. ...+.+.+.++.+ |.|||++||+.+.+.. +++ ++++++|++...|+..
T Consensus 151 aL~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~--~~tiii~sh~~~~~~~-~d~-~~~l~~g~i~~~~~~~ 220 (236)
T cd03253 151 AILKNPPILLLDEATSALDTHT------EREIQAALRDVSK--GRTTIVIAHRLSTIVN-ADK-IIVLKDGRIVERGTHE 220 (236)
T ss_pred HHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHhcC--CCEEEEEcCCHHHHHh-CCE-EEEEECCEEEeeCCHH
Confidence 999 9999999999999999 9999999999864 8999999999988864 554 4455559998887765
Q ss_pred cc
Q 003528 200 QA 201 (813)
Q Consensus 200 e~ 201 (813)
++
T Consensus 221 ~~ 222 (236)
T cd03253 221 EL 222 (236)
T ss_pred HH
Confidence 54
No 213
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=1.2e-23 Score=216.00 Aligned_cols=160 Identities=12% Similarity=0.046 Sum_probs=117.1
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-----------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----------- 77 (813)
||++.|++++|++ ..+|+++||++ .+|++++|+||||||||||+++|+|+.+ |++|+..-
T Consensus 1 ~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~~----p~~G~v~~~g~~~~~~~~~ 71 (204)
T PRK13538 1 MLEARNLACERDE---RILFSGLSFTL--NAGELVQIEGPNGAGKTSLLRILAGLAR----PDAGEVLWQGEPIRRQRDE 71 (204)
T ss_pred CeEEEEEEEEECC---EEEEecceEEE--CCCcEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEECCEEcccchHH
Confidence 4899999999976 67999999999 5899999999999999999999999998 88997311
Q ss_pred ---ccceecccccCCCchhHHHHhhCCCc-------ccc-----------------ccchHHHHHHHHHHHHHHH---hH
Q 003528 78 ---TKGIWMARCAGIEPCTLIMDLEGTDG-------RER-----------------GEDDTAFEKQSALFALAVS---DI 127 (813)
Q Consensus 78 ---~~g~~~~~~~~~e~~~~vld~~g~~~-------~e~-----------------~~~~~~~erQrv~iA~ALa---dv 127 (813)
..+.+.+. ....+...+.++..... ..+ ......+|+||++||+|++ ++
T Consensus 72 ~~~~~~~~~~~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 150 (204)
T PRK13538 72 YHQDLLYLGHQ-PGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPL 150 (204)
T ss_pred hhhheEEeCCc-cccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 01111111 11111122333221100 000 0011123999999999999 99
Q ss_pred hhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceee
Q 003528 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 186 (813)
Q Consensus 128 LLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll 186 (813)
+|+||||++||+.. ...+.+++.++.++ |.|+|++|||++.+.. +..++++
T Consensus 151 lllDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sh~~~~i~~-~~~~~~~ 201 (204)
T PRK13538 151 WILDEPFTAIDKQG------VARLEALLAQHAEQ-GGMVILTTHQDLPVAS-DKVRKLR 201 (204)
T ss_pred EEEeCCCccCCHHH------HHHHHHHHHHHHHC-CCEEEEEecChhhhcc-CCceEEe
Confidence 99999999999999 99999999998754 8899999999988765 4444433
No 214
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.90 E-value=6.4e-24 Score=236.15 Aligned_cols=174 Identities=15% Similarity=0.116 Sum_probs=140.8
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ---------- 76 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q---------- 76 (813)
.+.+++++++|.|++ ..++++|||++ .+|+|.+|+|.||||||||+++|+|+.. |++|++.
T Consensus 2 ~~~l~~~~itK~f~~---~~And~V~l~v--~~GeIHaLLGENGAGKSTLm~iL~G~~~----P~~GeI~v~G~~v~~~s 72 (501)
T COG3845 2 EPALEMRGITKRFPG---VVANDDVSLSV--KKGEIHALLGENGAGKSTLMKILFGLYQ----PDSGEIRVDGKEVRIKS 72 (501)
T ss_pred CceEEEeccEEEcCC---EEecCceeeee--cCCcEEEEeccCCCCHHHHHHHHhCccc----CCcceEEECCEEeccCC
Confidence 357999999999986 78999999999 5899999999999999999999999998 9999931
Q ss_pred ------eccceecccccCCCchhHHHHhhCCCcc----------ccccc--------------------hHHHHHHHHHH
Q 003528 77 ------TTKGIWMARCAGIEPCTLIMDLEGTDGR----------ERGED--------------------DTAFEKQSALF 120 (813)
Q Consensus 77 ------~~~g~~~~~~~~~e~~~~vld~~g~~~~----------e~~~~--------------------~~~~erQrv~i 120 (813)
.-.|+++|+... .+.+++.+|+-+... ..... ..-.+||||.|
T Consensus 73 P~dA~~~GIGMVhQHF~L-v~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEI 151 (501)
T COG3845 73 PRDAIRLGIGMVHQHFML-VPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEI 151 (501)
T ss_pred HHHHHHcCCcEEeecccc-ccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHH
Confidence 234566666543 344455555422110 00001 11129999999
Q ss_pred HHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecC
Q 003528 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (813)
Q Consensus 121 A~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~ 197 (813)
-.+|. ++|||||||+-|-|.. .+.+|+.++++.++ |+|||||||-++++...+++..++.+ |+++....
T Consensus 152 lKaLyr~a~iLILDEPTaVLTP~E------~~~lf~~l~~l~~~-G~tIi~ITHKL~Ev~~iaDrvTVLR~-Gkvvgt~~ 223 (501)
T COG3845 152 LKALYRGARLLILDEPTAVLTPQE------ADELFEILRRLAAE-GKTIIFITHKLKEVMAIADRVTVLRR-GKVVGTVD 223 (501)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeccHHHHHHhhCeeEEEeC-CeEEeeec
Confidence 99999 9999999999999999 99999999999876 99999999999999888899898888 99987766
Q ss_pred c
Q 003528 198 K 198 (813)
Q Consensus 198 ~ 198 (813)
+
T Consensus 224 ~ 224 (501)
T COG3845 224 P 224 (501)
T ss_pred C
Confidence 3
No 215
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=6.5e-24 Score=205.40 Aligned_cols=173 Identities=16% Similarity=0.149 Sum_probs=138.6
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCee-------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS------------- 75 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~------------- 75 (813)
.|+++++++.|+. ..+|-||+|+- ..|+.+.++||+|+|||||++.|+=+.. |.+|+.
T Consensus 2 sirv~~in~~yg~---~q~lfdi~l~~--~~getlvllgpsgagkssllr~lnlle~----p~sg~l~ia~~~fd~s~~~ 72 (242)
T COG4161 2 SIQLNGINCFYGA---HQALFDITLDC--PEGETLVLLGPSGAGKSSLLRVLNLLEM----PRSGTLNIAGNHFDFSKTP 72 (242)
T ss_pred ceEEccccccccc---chheeeeeecC--CCCCEEEEECCCCCchHHHHHHHHHHhC----CCCCeEEecccccccccCc
Confidence 5999999999987 78999999998 5899999999999999999999998887 888982
Q ss_pred --------eeccceecccccCCCchhHHHHh--------hCCCccccccchHH--------------------HHHHHHH
Q 003528 76 --------QTTKGIWMARCAGIEPCTLIMDL--------EGTDGRERGEDDTA--------------------FEKQSAL 119 (813)
Q Consensus 76 --------q~~~g~~~~~~~~~e~~~~vld~--------~g~~~~e~~~~~~~--------------------~erQrv~ 119 (813)
+...|+++++...+ +.+.+.++ .|+...+...+... +|+|||+
T Consensus 73 ~~k~i~~lr~~vgmvfqqy~lw-phltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrva 151 (242)
T COG4161 73 SDKAIRDLRRNVGMVFQQYNLW-PHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVA 151 (242)
T ss_pred cHHHHHHHHHhhhhhhhhhccC-chhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHH
Confidence 12346666665433 33444333 35543332211111 2999999
Q ss_pred HHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEec
Q 003528 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (813)
Q Consensus 120 iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g 196 (813)
|||||+ ++|++||||++|||+- ...|.++++++... |+|-++|||..+.+...+.+++.|.+ |+|++.|
T Consensus 152 iaralmmkpqvllfdeptaaldpei------taqvv~iikel~~t-gitqvivthev~va~k~as~vvyme~-g~ive~g 223 (242)
T COG4161 152 IARALMMEPQVLLFDEPTAALDPEI------TAQIVSIIKELAET-GITQVIVTHEVEVARKTASRVVYMEN-GHIVEQG 223 (242)
T ss_pred HHHHHhcCCcEEeecCcccccCHHH------HHHHHHHHHHHHhc-CceEEEEEeehhHHHhhhhheEeeec-CeeEeec
Confidence 999999 9999999999999999 89999999999875 99999999999999877777776666 9999999
Q ss_pred Ccc
Q 003528 197 PKP 199 (813)
Q Consensus 197 ~~~ 199 (813)
+..
T Consensus 224 ~a~ 226 (242)
T COG4161 224 DAS 226 (242)
T ss_pred chh
Confidence 753
No 216
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.1e-23 Score=225.98 Aligned_cols=182 Identities=18% Similarity=0.178 Sum_probs=132.6
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCCeee----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFRE-MDAFKGRSQ---------- 76 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~-m~p~sG~~q---------- 76 (813)
++|+++|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.... ..|.+|+..
T Consensus 19 ~~l~~~nl~~~~~~---~~~l~~vs~~i--~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~ 93 (274)
T PRK14265 19 SVFEVEGVKVFYGG---FLALVDVHLKI--PAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93 (274)
T ss_pred ceEEEeeEEEEeCC---eEEEeeeeeEE--cCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccccc
Confidence 48999999999976 57999999999 589999999999999999999999997410 002467621
Q ss_pred -------eccceecccccCCCchhHHHHhhCCC-------c-----------------------cccccchHHHHHHHHH
Q 003528 77 -------TTKGIWMARCAGIEPCTLIMDLEGTD-------G-----------------------RERGEDDTAFEKQSAL 119 (813)
Q Consensus 77 -------~~~g~~~~~~~~~e~~~~vld~~g~~-------~-----------------------~e~~~~~~~~erQrv~ 119 (813)
...+++++... ..+. .+.++.... . .........+|+||++
T Consensus 94 ~~~~~~~~~i~~v~q~~~-l~~~-tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~ 171 (274)
T PRK14265 94 INSVKLRRQVGMVFQRPN-PFPK-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLC 171 (274)
T ss_pred chhHHHhhcEEEEccCCc-cccc-cHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHH
Confidence 01122233211 1111 222222110 0 0001112234999999
Q ss_pred HHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeee--------c
Q 003528 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE--------D 188 (813)
Q Consensus 120 iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~--------~ 188 (813)
||+|++ ++|||||||++||+.. ...+.+++.++.+ +.|||++|||++.+...+++.+++. +
T Consensus 172 LAraL~~~p~lllLDEPt~~LD~~~------~~~l~~~L~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~ 243 (274)
T PRK14265 172 IARAIAMKPDVLLMDEPCSALDPIS------TRQVEELCLELKE--QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKR 243 (274)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHH------HHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEeccccccccc
Confidence 999999 9999999999999999 9999999999864 6899999999998887777777775 2
Q ss_pred CCeEEEecCcccccCC
Q 003528 189 IQKIWDSVPKPQAHME 204 (813)
Q Consensus 189 ~GkI~~~g~~~e~~~~ 204 (813)
+|+++..|++.+++.+
T Consensus 244 ~G~~~~~g~~~~~~~~ 259 (274)
T PRK14265 244 RGKLVEFSPTEQMFGS 259 (274)
T ss_pred CceEEEeCCHHHHHhC
Confidence 5999999998877543
No 217
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.90 E-value=2.2e-23 Score=214.24 Aligned_cols=171 Identities=15% Similarity=0.078 Sum_probs=126.9
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---------- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---------- 77 (813)
..|+++|++++|+.. ...+++++||++ .+|++++|+|+|||||||||++|+|+.+ |.+|+..-
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i--~~G~~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~ 77 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKV--KAGEKIGIVGRTGAGKSTLILALFRFLE----AEEGKIEIDGIDISTIPL 77 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEE--CCCCEEEEECCCCCCHHHHHHHHhcccC----CCCCeEEECCEEhHHCCH
Confidence 358999999999742 146999999999 5899999999999999999999999997 88897310
Q ss_pred -----ccceecccccCCCchhHHHHhhCCCcc-------------ccccchHHHHHHHHHHHHHHH---hHhhhccCCCC
Q 003528 78 -----TKGIWMARCAGIEPCTLIMDLEGTDGR-------------ERGEDDTAFEKQSALFALAVS---DIVLINMWCHD 136 (813)
Q Consensus 78 -----~~g~~~~~~~~~e~~~~vld~~g~~~~-------------e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsg 136 (813)
..++.++.. ...+ ..+.++...... ........+|+||++||+|++ +++|+||||++
T Consensus 78 ~~~~~~i~~v~q~~-~~~~-~tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 155 (207)
T cd03369 78 EDLRSSLTIIPQDP-TLFS-GTIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATAS 155 (207)
T ss_pred HHHHhhEEEEecCC-cccC-ccHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccc
Confidence 112222322 1222 234444321110 011122334999999999999 99999999999
Q ss_pred CCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecC
Q 003528 137 IGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (813)
Q Consensus 137 LD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~ 197 (813)
||+.. ...+.++++++. + |.|+|++||+++.+.. +++. +.+++|++...|+
T Consensus 156 LD~~~------~~~l~~~l~~~~-~-~~tiii~th~~~~~~~-~d~v-~~l~~g~i~~~g~ 206 (207)
T cd03369 156 IDYAT------DALIQKTIREEF-T-NSTILTIAHRLRTIID-YDKI-LVMDAGEVKEYDH 206 (207)
T ss_pred CCHHH------HHHHHHHHHHhc-C-CCEEEEEeCCHHHHhh-CCEE-EEEECCEEEecCC
Confidence 99999 999999999984 3 8999999999988764 5444 4445599987765
No 218
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.90 E-value=2.1e-23 Score=216.08 Aligned_cols=169 Identities=16% Similarity=0.107 Sum_probs=124.2
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee-------------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------- 76 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------- 76 (813)
|+++|++++|+.. .+.+++++||++ .+|++++|+|||||||||||++|+|+.. |++|+..
T Consensus 3 l~~~~l~~~~~~~-~~~~l~~i~~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~ 75 (221)
T cd03244 3 IEFKNVSLRYRPN-LPPVLKNISFSI--KPGEKVGIVGRTGSGKSSLLLALFRLVE----LSSGSILIDGVDISKIGLHD 75 (221)
T ss_pred EEEEEEEEecCCC-CcccccceEEEE--CCCCEEEEECCCCCCHHHHHHHHHcCCC----CCCCEEEECCEEhHhCCHHH
Confidence 7899999999742 247999999999 5899999999999999999999999987 8889731
Q ss_pred --eccceecccccCCCchhHHHHhhC------------------CCcc-------------ccccchHHHHHHHHHHHHH
Q 003528 77 --TTKGIWMARCAGIEPCTLIMDLEG------------------TDGR-------------ERGEDDTAFEKQSALFALA 123 (813)
Q Consensus 77 --~~~g~~~~~~~~~e~~~~vld~~g------------------~~~~-------------e~~~~~~~~erQrv~iA~A 123 (813)
...++.++... ..+ ..+.++.. +... ........+|+||++||+|
T Consensus 76 ~~~~i~~~~q~~~-l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~lara 153 (221)
T cd03244 76 LRSRISIIPQDPV-LFS-GTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARA 153 (221)
T ss_pred HhhhEEEECCCCc-ccc-chHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHH
Confidence 01122222211 111 12233221 1000 0111222349999999999
Q ss_pred HH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecC
Q 003528 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (813)
Q Consensus 124 La---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~ 197 (813)
++ +++||||||++||+.. ...+.++++++.+ +.|||++||+++.+.. +++++++ ++|+++..|+
T Consensus 154 l~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~--~~tii~~sh~~~~~~~-~d~i~~l-~~g~~~~~~~ 220 (221)
T cd03244 154 LLRKSKILVLDEATASVDPET------DALIQKTIREAFK--DCTVLTIAHRLDTIID-SDRILVL-DKGRVVEFDS 220 (221)
T ss_pred HhcCCCEEEEeCccccCCHHH------HHHHHHHHHHhcC--CCEEEEEeCCHHHHhh-CCEEEEE-ECCeEEecCC
Confidence 99 9999999999999999 9999999999853 6899999999988764 5555544 5599987764
No 219
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.90 E-value=1.4e-23 Score=204.53 Aligned_cols=141 Identities=17% Similarity=0.161 Sum_probs=114.0
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccccCC
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI 89 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~~~~ 89 (813)
|+++|++++|++ ..+++++||++ .+|++++|+||||||||||+++|+|+.+ |.+|+..- .+. .
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~--~~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~-~~~---~---- 63 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTI--NPGDRIGLVGRNGAGKSTLLKLIAGELE----PDEGIVTW-GST---V---- 63 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEE--CCCCEEEEECCCCCCHHHHHHHHcCCCC----CCceEEEE-CCe---E----
Confidence 478999999976 57999999999 5899999999999999999999999997 88897421 110 0
Q ss_pred CchhHHHHhhCCCccccccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceE
Q 003528 90 EPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTL 166 (813)
Q Consensus 90 e~~~~vld~~g~~~~e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TI 166 (813)
...++.. ....|+||++||+|++ +++|+|||+++||+.. ...+.+.++++ +.|+
T Consensus 64 -~i~~~~~------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~------~~~l~~~l~~~----~~ti 120 (144)
T cd03221 64 -KIGYFEQ------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLES------IEALEEALKEY----PGTV 120 (144)
T ss_pred -EEEEEcc------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH------HHHHHHHHHHc----CCEE
Confidence 0000000 4667999999999999 9999999999999999 99999999886 3699
Q ss_pred EEEeecCCCcccccCcceeeecCCe
Q 003528 167 MFVIRDKTRTPLENLEPVLREDIQK 191 (813)
Q Consensus 167 L~VtHD~~~~~~~~~~~vll~~~Gk 191 (813)
|++||+++.+...+++++++.+ ||
T Consensus 121 l~~th~~~~~~~~~d~v~~l~~-g~ 144 (144)
T cd03221 121 ILVSHDRYFLDQVATKIIELED-GK 144 (144)
T ss_pred EEEECCHHHHHHhCCEEEEEeC-CC
Confidence 9999999988765666655544 64
No 220
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.4e-23 Score=226.68 Aligned_cols=182 Identities=13% Similarity=0.121 Sum_probs=130.5
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCCeeee---------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFRE-MDAFKGRSQT--------- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~-m~p~sG~~q~--------- 77 (813)
++|+++|+++.|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+.. ..|++|++.-
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i--~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~ 112 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDI--PENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD 112 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 47999999999976 57999999999 589999999999999999999999998510 0046786210
Q ss_pred --------ccceecccccC-----CCchhHHHHhh-----------------CCCc------cccccchHHHHHHHHHHH
Q 003528 78 --------TKGIWMARCAG-----IEPCTLIMDLE-----------------GTDG------RERGEDDTAFEKQSALFA 121 (813)
Q Consensus 78 --------~~g~~~~~~~~-----~e~~~~vld~~-----------------g~~~------~e~~~~~~~~erQrv~iA 121 (813)
..+++++.... .+++.+..... |+.. .........+||||++||
T Consensus 113 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LA 192 (285)
T PRK14254 113 VDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIA 192 (285)
T ss_pred cchHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHH
Confidence 01222222111 11221111111 1100 001112223499999999
Q ss_pred HHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCc
Q 003528 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (813)
Q Consensus 122 ~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~ 198 (813)
+||+ ++|||||||++||+.. ...+.++++++.+ +.|||++|||++.+...++++++++++|+|+..|++
T Consensus 193 raL~~~p~lLLLDEPts~LD~~~------~~~l~~~L~~~~~--~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~ 264 (285)
T PRK14254 193 RAIAPDPEVILMDEPASALDPVA------TSKIEDLIEELAE--EYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDT 264 (285)
T ss_pred HHHHcCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHhc--CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCH
Confidence 9999 9999999999999999 9999999999975 379999999999887666665555556999998877
Q ss_pred cccc
Q 003528 199 PQAH 202 (813)
Q Consensus 199 ~e~~ 202 (813)
.+.+
T Consensus 265 ~~~~ 268 (285)
T PRK14254 265 DKIF 268 (285)
T ss_pred HHHH
Confidence 6654
No 221
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.90 E-value=1.5e-23 Score=224.08 Aligned_cols=181 Identities=15% Similarity=0.124 Sum_probs=129.7
Q ss_pred ccEEEEeeeEEeccc-----------------cccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCC
Q 003528 8 CSTQLIDGDGTFNVS-----------------GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA 70 (813)
Q Consensus 8 ~~Iel~dls~~y~~~-----------------~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p 70 (813)
..|++.|+++.|... ....+|+++||++ .+|++++|+|||||||||||++|+|+.+ |
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i--~~Ge~~~liG~NGsGKSTLlk~L~Gl~~----p 76 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKA--YEGDVIGLVGINGSGKSTLSNIIGGSLS----P 76 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCcC----C
Confidence 468999999998641 1235899999999 5899999999999999999999999997 8
Q ss_pred CCCeeeeccc-eecccccCCCchhHHHHhh-------CCCccc--------------------cccchHHHHHHHHHHHH
Q 003528 71 FKGRSQTTKG-IWMARCAGIEPCTLIMDLE-------GTDGRE--------------------RGEDDTAFEKQSALFAL 122 (813)
Q Consensus 71 ~sG~~q~~~g-~~~~~~~~~e~~~~vld~~-------g~~~~e--------------------~~~~~~~~erQrv~iA~ 122 (813)
.+|+...... .+..+.....+...+.++. +....+ .......+|+||++||+
T Consensus 77 ~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Lar 156 (264)
T PRK13546 77 TVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSI 156 (264)
T ss_pred CceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHH
Confidence 8898421110 1111111111111222221 211110 00111224999999999
Q ss_pred HHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcc
Q 003528 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (813)
Q Consensus 123 ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~ 199 (813)
|++ ++|||||||++||+.. ...+++.+.++.+ .|.|+|++||+++.+...+++++++ ++|+|...|+..
T Consensus 157 al~~~p~iLlLDEPt~gLD~~~------~~~l~~~L~~~~~-~g~tiIiisH~~~~i~~~~d~i~~l-~~G~i~~~g~~~ 228 (264)
T PRK13546 157 NITVNPDILVIDEALSVGDQTF------AQKCLDKIYEFKE-QNKTIFFVSHNLGQVRQFCTKIAWI-EGGKLKDYGELD 228 (264)
T ss_pred HHhhCCCEEEEeCccccCCHHH------HHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHcCEEEEE-ECCEEEEeCCHH
Confidence 999 9999999999999999 9999999999865 4899999999999887656655555 459999888766
Q ss_pred ccc
Q 003528 200 QAH 202 (813)
Q Consensus 200 e~~ 202 (813)
++.
T Consensus 229 ~~~ 231 (264)
T PRK13546 229 DVL 231 (264)
T ss_pred HHH
Confidence 543
No 222
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.6e-23 Score=224.43 Aligned_cols=183 Identities=15% Similarity=0.147 Sum_probs=129.7
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC-CCCCCeeee--------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREM-DAFKGRSQT-------- 77 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m-~p~sG~~q~-------- 77 (813)
.++|+++|+++.|++ ..+|+++||++ .+|++++|+||||||||||+++|+|+....- .|++|+..-
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i--~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~ 97 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRI--PKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDK 97 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEE--cCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccc
Confidence 457999999999975 57999999999 5899999999999999999999999975100 036786210
Q ss_pred ---------ccceecccccC-----CCchhHHHHhhCCCcc-------------------------ccccchHHHHHHHH
Q 003528 78 ---------TKGIWMARCAG-----IEPCTLIMDLEGTDGR-------------------------ERGEDDTAFEKQSA 118 (813)
Q Consensus 78 ---------~~g~~~~~~~~-----~e~~~~vld~~g~~~~-------------------------e~~~~~~~~erQrv 118 (813)
..++.++.... .++..+.....+.... ........+|+||+
T Consensus 98 ~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 177 (272)
T PRK14236 98 KVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRL 177 (272)
T ss_pred ccCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHH
Confidence 01122222111 1111111111111000 00011122499999
Q ss_pred HHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEe
Q 003528 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (813)
Q Consensus 119 ~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~ 195 (813)
+||+|++ +++||||||++||+.. ...+.+++.++.+ +.|+|++||+++.+...+++++++. +|+|+..
T Consensus 178 ~laral~~~p~lllLDEPt~gLD~~~------~~~l~~~L~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~-~G~i~~~ 248 (272)
T PRK14236 178 VIARAIAIEPEVLLLDEPTSALDPIS------TLKIEELITELKS--KYTIVIVTHNMQQAARVSDYTAFMY-MGKLVEY 248 (272)
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHh--CCeEEEEeCCHHHHHhhCCEEEEEE-CCEEEec
Confidence 9999999 9999999999999999 9999999999964 6899999999988776566555554 5999999
Q ss_pred cCcccccC
Q 003528 196 VPKPQAHM 203 (813)
Q Consensus 196 g~~~e~~~ 203 (813)
|++.+...
T Consensus 249 g~~~~~~~ 256 (272)
T PRK14236 249 GDTDTLFT 256 (272)
T ss_pred CCHHHHhc
Confidence 88776543
No 223
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.90 E-value=7.9e-24 Score=206.82 Aligned_cols=173 Identities=21% Similarity=0.245 Sum_probs=133.7
Q ss_pred cEEEEeeeEEeccc-cccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee-----------
Q 003528 9 STQLIDGDGTFNVS-GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----------- 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~-~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----------- 76 (813)
.|+++++++..+.. ....+|++|+|.+ .+|+-++|+||+||||||||-+++|+.. |++|+..
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v--~~Ge~vaiVG~SGSGKSTLl~vlAGLd~----~ssGeV~l~G~~L~~ldE 79 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVV--KRGETVAIVGPSGSGKSTLLAVLAGLDD----PSSGEVRLLGQPLHKLDE 79 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEe--cCCceEEEEcCCCCcHHhHHHHHhcCCC----CCCceEEEcCcchhhcCH
Confidence 68999999988642 2357999999999 5899999999999999999999999997 9999821
Q ss_pred --------eccceecccc------cCCCchhHHHHhhCCCcccc---ccchH-----------------HHHHHHHHHHH
Q 003528 77 --------TTKGIWMARC------AGIEPCTLIMDLEGTDGRER---GEDDT-----------------AFEKQSALFAL 122 (813)
Q Consensus 77 --------~~~g~~~~~~------~~~e~~~~vld~~g~~~~e~---~~~~~-----------------~~erQrv~iA~ 122 (813)
...|.+||.. +..+|+.+.+++.|-..... ..... ..|+|||+|||
T Consensus 80 d~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiAR 159 (228)
T COG4181 80 DARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALAR 159 (228)
T ss_pred HHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHH
Confidence 2234454433 23456666666555211111 11111 12999999999
Q ss_pred HHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEe
Q 003528 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (813)
Q Consensus 123 ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~ 195 (813)
|++ +||+.||||.+||..+ -+.|.+++..+..++|+|+++||||...+.+ |.+.+-+ ..|+||.+
T Consensus 160 Afa~~P~vLfADEPTGNLD~~T------g~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~-~~G~l~~~ 227 (228)
T COG4181 160 AFAGRPDVLFADEPTGNLDRAT------GDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRL-RSGRLVED 227 (228)
T ss_pred HhcCCCCEEeccCCCCCcchhH------HHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeee-ecceeccC
Confidence 999 9999999999999999 9999999999999999999999999998874 5555544 44999854
No 224
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.90 E-value=1.6e-23 Score=220.71 Aligned_cols=175 Identities=17% Similarity=0.063 Sum_probs=125.5
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCCCCCCCeeee---------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN--FREMDAFKGRSQT--------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~--~~~m~p~sG~~q~--------- 77 (813)
||+++|+++.|++ ..+++++||++ .+|++++|+|||||||||||++|+|+. + |++|+..-
T Consensus 1 ~i~~~nl~~~~~~---~~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~----~~~G~i~~~g~~~~~~~ 71 (248)
T PRK09580 1 MLSIKDLHVSVED---KAILRGLNLEV--RPGEVHAIMGPNGSGKSTLSATLAGREDYE----VTGGTVEFKGKDLLELS 71 (248)
T ss_pred CeEEEEEEEEeCC---eeeeecceeEE--cCCCEEEEECCCCCCHHHHHHHHcCCccCC----CCceEEEECCCccccCC
Confidence 4899999999976 67999999999 589999999999999999999999994 4 77887310
Q ss_pred -------ccceecccccCCCc---hh---HHHH-------------------------hhCCCcc--cc-c-cchHHHHH
Q 003528 78 -------TKGIWMARCAGIEP---CT---LIMD-------------------------LEGTDGR--ER-G-EDDTAFEK 115 (813)
Q Consensus 78 -------~~g~~~~~~~~~e~---~~---~vld-------------------------~~g~~~~--e~-~-~~~~~~er 115 (813)
..++..+....... .. ++.. ..+++.. .+ . .....+|+
T Consensus 72 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~ 151 (248)
T PRK09580 72 PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEK 151 (248)
T ss_pred HHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHH
Confidence 01111222110000 00 0000 0011100 00 0 12344699
Q ss_pred HHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeE
Q 003528 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (813)
Q Consensus 116 Qrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI 192 (813)
||++||+|++ ++|||||||++||+.. ...+.+++.++.+. +.|||++|||++.+...+.+.++++++|++
T Consensus 152 qrv~laral~~~p~illLDEPt~~LD~~~------~~~l~~~l~~l~~~-~~tiii~sH~~~~~~~~~~d~i~~l~~g~i 224 (248)
T PRK09580 152 KRNDILQMAVLEPELCILDESDSGLDIDA------LKIVADGVNSLRDG-KRSFIIVTHYQRILDYIKPDYVHVLYQGRI 224 (248)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHhhhCCEEEEEECCeE
Confidence 9999999999 9999999999999999 99999999998754 899999999998876542455555556999
Q ss_pred EEecCcc
Q 003528 193 WDSVPKP 199 (813)
Q Consensus 193 ~~~g~~~ 199 (813)
+..|++.
T Consensus 225 ~~~g~~~ 231 (248)
T PRK09580 225 VKSGDFT 231 (248)
T ss_pred EEeCCHH
Confidence 9887654
No 225
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.1e-23 Score=217.44 Aligned_cols=166 Identities=17% Similarity=0.164 Sum_probs=119.6
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee------------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------------ 77 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~------------ 77 (813)
+.+ +++|+|++ +.+ ++||++ .+ ++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 2 ~~~-~l~~~~~~---~~~--~vsl~i--~~-e~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~ 68 (214)
T cd03297 2 LCV-DIEKRLPD---FTL--KIDFDL--NE-EVTGIFGASGAGKSTLLRCIAGLEK----PDGGTIVLNGTVLFDSRKKI 68 (214)
T ss_pred cee-eeeEecCC---eee--CceEEE--cc-eeEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCEecccccchh
Confidence 445 99999976 444 999999 58 9999999999999999999999997 88887310
Q ss_pred -------ccceecccccCCCchhHHHHhhCCC-----ccc--------------------cccchHHHHHHHHHHHHHHH
Q 003528 78 -------TKGIWMARCAGIEPCTLIMDLEGTD-----GRE--------------------RGEDDTAFEKQSALFALAVS 125 (813)
Q Consensus 78 -------~~g~~~~~~~~~e~~~~vld~~g~~-----~~e--------------------~~~~~~~~erQrv~iA~ALa 125 (813)
..++..+. ....+...+.++.... ... .......+||||++||+|++
T Consensus 69 ~~~~~~~~i~~~~q~-~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (214)
T cd03297 69 NLPPQQRKIGLVFQQ-YALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALA 147 (214)
T ss_pred hhhhHhhcEEEEecC-CccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHh
Confidence 01122222 1111112222322110 000 00111223999999999999
Q ss_pred ---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEec
Q 003528 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (813)
Q Consensus 126 ---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g 196 (813)
+++||||||++||+.. .+.+.+++.++.++.|.|+|++|||++.+...+++++++.+ |+++..|
T Consensus 148 ~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 148 AQPELLLLDEPFSALDRAL------RLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred cCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEEC-CEEEecC
Confidence 9999999999999999 99999999999765589999999999888766666655554 9987654
No 226
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=2e-23 Score=214.24 Aligned_cols=177 Identities=12% Similarity=-0.020 Sum_probs=125.7
Q ss_pred cEEEEeeeEEeccc-cccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----------
Q 003528 9 STQLIDGDGTFNVS-GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~-~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---------- 77 (813)
.+.++|+++.|..+ +...+|+++||++ .+|++++|+|||||||||||++|+|+.++. .|++|+..-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~~~~G~i~i~g~~~~~~~~ 79 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVV--KPGEMVLVLGRPGSGCSTLLKALANRTEGN-VSVEGDIHYNGIPYKEFAE 79 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEE--CCCcEEEEECCCCCCHHHHHHHhcccCCCC-CCcceEEEECCEECccchh
Confidence 47899999999742 2367999999999 589999999999999999999999998511 156786210
Q ss_pred ----ccceecccccCCCchhHHHHhhCCC----ccccccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChh
Q 003528 78 ----TKGIWMARCAGIEPCTLIMDLEGTD----GRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKP 146 (813)
Q Consensus 78 ----~~g~~~~~~~~~e~~~~vld~~g~~----~~e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~ 146 (813)
..++.++. ....+...+.++.... ..........+|+||++||+|++ ++||+||||++||+..
T Consensus 80 ~~~~~i~~~~q~-~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~----- 153 (202)
T cd03233 80 KYPGEIIYVSEE-DVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSST----- 153 (202)
T ss_pred hhcceEEEEecc-cccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHH-----
Confidence 01122222 1222233444544321 11222334456999999999999 9999999999999999
Q ss_pred hHHHHHHHHHHhhcCCCceEEEEee-cCCCcccccCcceeeecCCeEEEec
Q 003528 147 LLKTVFQVMMRLFSPRKTTLMFVIR-DKTRTPLENLEPVLREDIQKIWDSV 196 (813)
Q Consensus 147 l~~~v~ell~~L~~~~g~TIL~VtH-D~~~~~~~~~~~vll~~~GkI~~~g 196 (813)
++.+.+++.++.++.+.|+|+++| +.+.+...+++++++.+ |+++..|
T Consensus 154 -~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~g 202 (202)
T cd03233 154 -ALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYYG 202 (202)
T ss_pred -HHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEecC
Confidence 999999999997654667666655 45666655665555555 9987643
No 227
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.8e-23 Score=221.38 Aligned_cols=181 Identities=14% Similarity=0.122 Sum_probs=128.8
Q ss_pred CCccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCC-CCCCeee----e---
Q 003528 6 ECCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD-AFKGRSQ----T--- 77 (813)
Q Consensus 6 ~~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~-p~sG~~q----~--- 77 (813)
++++|+++|++++|++ ..+|+++||++ .+|++++|+||||||||||+++|+|+....-+ +++|+.. .
T Consensus 3 ~~~~i~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 77 (253)
T PRK14261 3 MEIILSTKNLNLWYGE---KHALYDITISI--PKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77 (253)
T ss_pred ccceEEEeeeEEEECC---eeeeeeeEEEE--CCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 3457999999999975 67999999999 58999999999999999999999998641000 1367621 0
Q ss_pred ----------ccceecccccCCCchhHHHHhhCC-------Ccc-c------------------------cccchHHHHH
Q 003528 78 ----------TKGIWMARCAGIEPCTLIMDLEGT-------DGR-E------------------------RGEDDTAFEK 115 (813)
Q Consensus 78 ----------~~g~~~~~~~~~e~~~~vld~~g~-------~~~-e------------------------~~~~~~~~er 115 (813)
..++.++.. ...+ ..+.++... ... . .......+|+
T Consensus 78 ~~~~~~~~~~~i~~~~q~~-~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 78 SGADVVALRRKIGMVFQRP-NPFP-KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQ 155 (253)
T ss_pred cccchhhhhceEEEEecCC-ccCc-ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHH
Confidence 011222221 1111 122222211 000 0 0001122499
Q ss_pred HHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeE
Q 003528 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (813)
Q Consensus 116 Qrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI 192 (813)
||++||+|++ +++||||||+|||+.. ...+.+++.++.+ +.|+|++||+++.+...+++++++. +|++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~------~~~l~~~l~~~~~--~~tvii~sh~~~~~~~~~d~v~~l~-~G~i 226 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIA------TAKIEDLIEDLKK--EYTVIIVTHNMQQAARVSDYTGFMY-LGKL 226 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHhh--CceEEEEEcCHHHHHhhCCEEEEEE-CCEE
Confidence 9999999999 9999999999999999 9999999999864 5899999999988876566555554 4999
Q ss_pred EEecCccccc
Q 003528 193 WDSVPKPQAH 202 (813)
Q Consensus 193 ~~~g~~~e~~ 202 (813)
+..|++.+++
T Consensus 227 ~~~g~~~~~~ 236 (253)
T PRK14261 227 IEFDKTTQIF 236 (253)
T ss_pred EEcCCHHHHH
Confidence 9988876654
No 228
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.90 E-value=1.7e-23 Score=243.59 Aligned_cols=181 Identities=16% Similarity=0.141 Sum_probs=133.4
Q ss_pred CccEEEEeeeEEecc--ccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeec------
Q 003528 7 CCSTQLIDGDGTFNV--SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT------ 78 (813)
Q Consensus 7 ~~~Iel~dls~~y~~--~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~------ 78 (813)
.++|+++|++++|++ .+...+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.-.
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i--~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~----p~~G~i~~~~g~~~~ 350 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEV--KEGEIFGIVGTSGAGKTTLSKIIAGVLE----PTSGEVNVRVGDEWV 350 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEEecCCccc
Confidence 347999999999952 11246999999999 5899999999999999999999999997 888874210
Q ss_pred ----------------cceecccccCCCchhHHHHh------------------------hCCCc-------cccccchH
Q 003528 79 ----------------KGIWMARCAGIEPCTLIMDL------------------------EGTDG-------RERGEDDT 111 (813)
Q Consensus 79 ----------------~g~~~~~~~~~e~~~~vld~------------------------~g~~~-------~e~~~~~~ 111 (813)
.+++++.. ...+...+.++ .|+.. ........
T Consensus 351 ~~~~~~~~~~~~~~~~i~~v~q~~-~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS 429 (520)
T TIGR03269 351 DMTKPGPDGRGRAKRYIGILHQEY-DLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELS 429 (520)
T ss_pred cccccchhhHHHHhhhEEEEccCc-ccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCC
Confidence 12222221 11111112221 12211 00111223
Q ss_pred HHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeec
Q 003528 112 AFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (813)
Q Consensus 112 ~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~ 188 (813)
.+||||++||+||+ ++|||||||++||+.. ...+.+++.++.++.|.|||+||||++.+...+++++++.+
T Consensus 430 gGq~qrv~laral~~~p~lLllDEPt~~LD~~~------~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~ 503 (520)
T TIGR03269 430 EGERHRVALAQVLIKEPRIVILDEPTGTMDPIT------KVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRD 503 (520)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 35999999999999 9999999999999999 99999999999765689999999999988766666666555
Q ss_pred CCeEEEecCcccc
Q 003528 189 IQKIWDSVPKPQA 201 (813)
Q Consensus 189 ~GkI~~~g~~~e~ 201 (813)
|+++..|++.++
T Consensus 504 -G~i~~~g~~~~~ 515 (520)
T TIGR03269 504 -GKIVKIGDPEEI 515 (520)
T ss_pred -CEEEEECCHHHH
Confidence 999988876554
No 229
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.90 E-value=3.1e-23 Score=214.77 Aligned_cols=167 Identities=17% Similarity=0.107 Sum_probs=121.9
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee------------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------------ 77 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~------------ 77 (813)
|+++|+++.|++. ...+++++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 3 l~~~~l~~~~~~~-~~~~l~~i~~~i--~~G~~~~i~G~nGsGKSTLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~ 75 (220)
T cd03245 3 IEFRNVSFSYPNQ-EIPALDNVSLTI--RAGEKVAIIGRVGSGKSTLLKLLAGLYK----PTSGSVLLDGTDIRQLDPAD 75 (220)
T ss_pred EEEEEEEEEcCCC-CcccccceEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCcC----CCCCeEEECCEEhHHCCHHH
Confidence 7899999999642 146999999999 5899999999999999999999999997 88887310
Q ss_pred ---ccceecccccCCCchhHHHHhhC-------------------CCcc-c------------cccchHHHHHHHHHHHH
Q 003528 78 ---TKGIWMARCAGIEPCTLIMDLEG-------------------TDGR-E------------RGEDDTAFEKQSALFAL 122 (813)
Q Consensus 78 ---~~g~~~~~~~~~e~~~~vld~~g-------------------~~~~-e------------~~~~~~~~erQrv~iA~ 122 (813)
..++.++.. ...+ ..+.++.. +... . .......+|+||++||+
T Consensus 76 ~~~~i~~~~q~~-~~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~ 153 (220)
T cd03245 76 LRRNIGYVPQDV-TLFY-GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALAR 153 (220)
T ss_pred HHhhEEEeCCCC-cccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHH
Confidence 112222222 1111 13333321 1100 0 00123335999999999
Q ss_pred HHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEe
Q 003528 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (813)
Q Consensus 123 ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~ 195 (813)
|++ ++|||||||++||+.. ...+.+++.++.+ +.|||++|||++.. ..++++ ++.++|+++..
T Consensus 154 al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tii~~sH~~~~~-~~~d~v-~~l~~g~i~~~ 219 (220)
T cd03245 154 ALLNDPPILLLDEPTSAMDMNS------EERLKERLRQLLG--DKTLIIITHRPSLL-DLVDRI-IVMDSGRIVAD 219 (220)
T ss_pred HHhcCCCEEEEeCccccCCHHH------HHHHHHHHHHhcC--CCEEEEEeCCHHHH-HhCCEE-EEEeCCeEeec
Confidence 999 9999999999999999 9999999999865 38999999999876 455544 44555998754
No 230
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.4e-23 Score=222.22 Aligned_cols=181 Identities=15% Similarity=0.125 Sum_probs=131.3
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCCeeee---------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFRE-MDAFKGRSQT--------- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~-m~p~sG~~q~--------- 77 (813)
++|+++|+++.|++ ..+|+++||++ .+|++++|+|+|||||||||++|+|+.... ..|++|++.-
T Consensus 9 ~~l~i~~v~~~~~~---~~il~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 83 (264)
T PRK14243 9 TVLRTENLNVYYGS---FLAVKNVWLDI--PKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD 83 (264)
T ss_pred eEEEEeeeEEEECC---EEEeecceEEE--cCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccc
Confidence 47999999999976 57999999999 589999999999999999999999986410 0025676210
Q ss_pred --------ccceecccccCCCchhHHHHhhCC-------Cc--cc---------------------cccchHHHHHHHHH
Q 003528 78 --------TKGIWMARCAGIEPCTLIMDLEGT-------DG--RE---------------------RGEDDTAFEKQSAL 119 (813)
Q Consensus 78 --------~~g~~~~~~~~~e~~~~vld~~g~-------~~--~e---------------------~~~~~~~~erQrv~ 119 (813)
..+++++... ..+ ..+.+++.. .. .+ .......+|+||++
T Consensus 84 ~~~~~~~~~i~~v~q~~~-~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~ 161 (264)
T PRK14243 84 VDPVEVRRRIGMVFQKPN-PFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLC 161 (264)
T ss_pred cChHHHhhhEEEEccCCc-ccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHH
Confidence 0122222211 111 122222211 00 00 00111223999999
Q ss_pred HHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeee--------c
Q 003528 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE--------D 188 (813)
Q Consensus 120 iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~--------~ 188 (813)
||+|++ ++|||||||++||+.. ...+.+++.++.+ +.|||++|||++.+...+++++++. +
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~------~~~l~~~L~~~~~--~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~ 233 (264)
T PRK14243 162 IARAIAVQPEVILMDEPCSALDPIS------TLRIEELMHELKE--QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGR 233 (264)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHhc--CCEEEEEecCHHHHHHhCCEEEEEeccccccccc
Confidence 999999 9999999999999999 9999999999864 4799999999998887777766665 1
Q ss_pred CCeEEEecCcccccC
Q 003528 189 IQKIWDSVPKPQAHM 203 (813)
Q Consensus 189 ~GkI~~~g~~~e~~~ 203 (813)
.|+|+..|++.+++.
T Consensus 234 ~g~i~~~~~~~~~~~ 248 (264)
T PRK14243 234 YGYLVEFDRTEKIFN 248 (264)
T ss_pred CceEEEeCCHHHHHh
Confidence 599999998877654
No 231
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.5e-23 Score=220.02 Aligned_cols=184 Identities=14% Similarity=0.129 Sum_probs=129.4
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCCeee---------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFR-EMDAFKGRSQ--------- 76 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~-~m~p~sG~~q--------- 76 (813)
.+||+++|+++.|+. ..+|+++||++ .+|++++|+|+|||||||||++|+|+... ...+++|++.
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 77 (252)
T PRK14255 3 KKIITSSDVHLFYGK---FEALKGIDLDF--NQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAP 77 (252)
T ss_pred cceEEEEeEEEEECC---eeEEecceEEE--cCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccc
Confidence 347999999999975 67999999999 58999999999999999999999998630 0001467621
Q ss_pred --------eccceecccccC-----CCchhHHHHhhCCCcc----c---------------------cccchHHHHHHHH
Q 003528 77 --------TTKGIWMARCAG-----IEPCTLIMDLEGTDGR----E---------------------RGEDDTAFEKQSA 118 (813)
Q Consensus 77 --------~~~g~~~~~~~~-----~e~~~~vld~~g~~~~----e---------------------~~~~~~~~erQrv 118 (813)
...++..+.... .+++.+.....+.... + .......+|+||+
T Consensus 78 ~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv 157 (252)
T PRK14255 78 NEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRV 157 (252)
T ss_pred cccHHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHH
Confidence 011222222111 1122211111111100 0 0011122499999
Q ss_pred HHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEe
Q 003528 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (813)
Q Consensus 119 ~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~ 195 (813)
+||+|++ ++|||||||++||+.. ...+.+++.++.+ +.|+|+||||++.+...+++++++ ++|+++..
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l-~~G~i~~~ 228 (252)
T PRK14255 158 CIARVLAVKPDVILLDEPTSALDPIS------STQIENMLLELRD--QYTIILVTHSMHQASRISDKTAFF-LTGNLIEF 228 (252)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEE-ECCEEEEe
Confidence 9999999 9999999999999999 9999999999864 479999999999887666655555 45999999
Q ss_pred cCcccccCC
Q 003528 196 VPKPQAHME 204 (813)
Q Consensus 196 g~~~e~~~~ 204 (813)
|++.+.+.+
T Consensus 229 ~~~~~~~~~ 237 (252)
T PRK14255 229 ADTKQMFLN 237 (252)
T ss_pred CCHHHHhcC
Confidence 887766543
No 232
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=1e-23 Score=217.70 Aligned_cols=181 Identities=18% Similarity=0.142 Sum_probs=146.5
Q ss_pred ccEEEEeeeEEeccc---------------------cccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 003528 8 CSTQLIDGDGTFNVS---------------------GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFR 66 (813)
Q Consensus 8 ~~Iel~dls~~y~~~---------------------~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~ 66 (813)
++|.+.|+++.|.-. ....+|+||||++ .+|+.+||+|+||||||||||+|+|..+
T Consensus 2 ~~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i--~~Ge~vGiiG~NGaGKSTLlkliaGi~~- 78 (249)
T COG1134 2 VVIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEI--YKGERVGIIGHNGAGKSTLLKLIAGIYK- 78 (249)
T ss_pred cEEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEE--eCCCEEEEECCCCCcHHHHHHHHhCccC-
Confidence 468888998887421 1346899999999 5899999999999999999999999998
Q ss_pred CCCCCCCeeeeccc---------eecccccCCCchhHHHHhhCCCccccccc---hHHH-----------------HHHH
Q 003528 67 EMDAFKGRSQTTKG---------IWMARCAGIEPCTLIMDLEGTDGRERGED---DTAF-----------------EKQS 117 (813)
Q Consensus 67 ~m~p~sG~~q~~~g---------~~~~~~~~~e~~~~vld~~g~~~~e~~~~---~~~~-----------------erQr 117 (813)
|++|+...+.. .+-+..++.+|+.+..-..|+...+..+. ..+| |+-|
T Consensus 79 ---Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aR 155 (249)
T COG1134 79 ---PTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYAR 155 (249)
T ss_pred ---CCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHH
Confidence 99999533211 22334455677777777778776553332 2222 9999
Q ss_pred HHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEE
Q 003528 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (813)
Q Consensus 118 v~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~ 194 (813)
++||.|+. ||||+||+.+-.|+.. ++.-.+.+.++.++ +.|+|+||||++.+...|++.+++.+ |+|..
T Consensus 156 LaFsia~~~~pdILllDEvlavGD~~F------~~K~~~rl~e~~~~-~~tiv~VSHd~~~I~~~Cd~~i~l~~-G~i~~ 227 (249)
T COG1134 156 LAFSVATHVEPDILLLDEVLAVGDAAF------QEKCLERLNELVEK-NKTIVLVSHDLGAIKQYCDRAIWLEH-GQIRM 227 (249)
T ss_pred HHHhhhhhcCCCEEEEehhhhcCCHHH------HHHHHHHHHHHHHc-CCEEEEEECCHHHHHHhcCeeEEEeC-CEEEE
Confidence 99999999 9999999999999998 99999999998765 69999999999999988888888877 99999
Q ss_pred ecCccccc
Q 003528 195 SVPKPQAH 202 (813)
Q Consensus 195 ~g~~~e~~ 202 (813)
.|.++++.
T Consensus 228 ~G~~~~vi 235 (249)
T COG1134 228 EGSPEEVI 235 (249)
T ss_pred cCCHHHHH
Confidence 99988764
No 233
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.9e-23 Score=242.15 Aligned_cols=172 Identities=15% Similarity=0.090 Sum_probs=129.1
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---------- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---------- 77 (813)
++|+++|+++.|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.-
T Consensus 3 ~~l~~~~l~~~~~~---~~il~~isl~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----p~~G~I~~~g~~i~~~~~ 73 (501)
T PRK11288 3 PYLSFDGIGKTFPG---VKALDDISFDC--RAGQVHALMGENGAGKSTLLKILSGNYQ----PDAGSILIDGQEMRFAST 73 (501)
T ss_pred ceEEEeeeEEEECC---EEEEeeeeEEE--eCCcEEEEECCCCCCHHHHHHHHhCCCC----CCCCEEEECCEECCCCCH
Confidence 57999999999975 57999999999 5899999999999999999999999997 88898321
Q ss_pred ------ccceecccccCCCchhHHHHhhC----------------------------CCcc--ccccchHHHHHHHHHHH
Q 003528 78 ------TKGIWMARCAGIEPCTLIMDLEG----------------------------TDGR--ERGEDDTAFEKQSALFA 121 (813)
Q Consensus 78 ------~~g~~~~~~~~~e~~~~vld~~g----------------------------~~~~--e~~~~~~~~erQrv~iA 121 (813)
..+++++.. ...+...+.++.. +... ........+||||++||
T Consensus 74 ~~~~~~~i~~v~q~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~la 152 (501)
T PRK11288 74 TAALAAGVAIIYQEL-HLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIA 152 (501)
T ss_pred HHHHhCCEEEEEech-hccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHH
Confidence 012222221 1112222333221 1100 00011122499999999
Q ss_pred HHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecC
Q 003528 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (813)
Q Consensus 122 ~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~ 197 (813)
+|++ ++|||||||++||+.. ...+.+.+.++.++ |.|||+||||++.+...+++++++.+ |+|+..+.
T Consensus 153 ral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-g~tiiiitHd~~~~~~~~d~i~~l~~-G~i~~~~~ 223 (501)
T PRK11288 153 KALARNARVIAFDEPTSSLSARE------IEQLFRVIRELRAE-GRVILYVSHRMEEIFALCDAITVFKD-GRYVATFD 223 (501)
T ss_pred HHHHhCCCEEEEcCCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEeecC
Confidence 9999 9999999999999999 99999999999764 89999999999988766666665555 99987654
No 234
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=3e-23 Score=213.54 Aligned_cols=153 Identities=12% Similarity=0.047 Sum_probs=114.4
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-----------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----------- 77 (813)
+|+++|++++|++ ..+++++||++ .+|++++|+||||||||||+++|+|+.+ |++|+..-
T Consensus 2 ~l~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~ 72 (207)
T PRK13539 2 MLEGEDLACVRGG---RVLFSGLSFTL--AAGEALVLTGPNGSGKTTLLRLIAGLLP----PAAGTIKLDGGDIDDPDVA 72 (207)
T ss_pred EEEEEeEEEEECC---eEEEeceEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCEeCcchhhH
Confidence 6999999999976 57999999999 5899999999999999999999999997 88897311
Q ss_pred -ccceecccccCCCchhHHHHhh-------C--------------CCc--cccccchHHHHHHHHHHHHHHH---hHhhh
Q 003528 78 -TKGIWMARCAGIEPCTLIMDLE-------G--------------TDG--RERGEDDTAFEKQSALFALAVS---DIVLI 130 (813)
Q Consensus 78 -~~g~~~~~~~~~e~~~~vld~~-------g--------------~~~--~e~~~~~~~~erQrv~iA~ALa---dvLLL 130 (813)
..+.+.++ ....+...+.++. + +.. .........+|+||++||+|++ ++||+
T Consensus 73 ~~~~~~~~~-~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 151 (207)
T PRK13539 73 EACHYLGHR-NAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWIL 151 (207)
T ss_pred hhcEEecCC-CcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 01111111 1111112222221 1 100 0000111224999999999999 99999
Q ss_pred ccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCccc
Q 003528 131 NMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL 178 (813)
Q Consensus 131 DEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~ 178 (813)
||||++||+.. ...+.+.+.++.++ |.|+|++||+++.+..
T Consensus 152 DEPt~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 152 DEPTAALDAAA------VALFAELIRAHLAQ-GGIVIAATHIPLGLPG 192 (207)
T ss_pred eCCcccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCchhhcc
Confidence 99999999999 99999999998765 8999999999988873
No 235
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.89 E-value=3.1e-23 Score=212.53 Aligned_cols=157 Identities=11% Similarity=0.068 Sum_probs=115.3
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee------------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------------ 77 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~------------ 77 (813)
|+++|+++.|++ ..+|+++||++ .+|++++|+|+||||||||+++|+|+.+ |++|+..-
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~ 71 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTL--AAGEALQVTGPNGSGKTTLLRILAGLSP----PLAGRVLLNGGPLDFQRDSI 71 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEECCEecccccHHh
Confidence 578999999976 67999999999 5899999999999999999999999997 88897310
Q ss_pred --ccceecccccCCCchhHHHHhhCCCcc----c-----------------cccchHHHHHHHHHHHHHHH---hHhhhc
Q 003528 78 --TKGIWMARCAGIEPCTLIMDLEGTDGR----E-----------------RGEDDTAFEKQSALFALAVS---DIVLIN 131 (813)
Q Consensus 78 --~~g~~~~~~~~~e~~~~vld~~g~~~~----e-----------------~~~~~~~~erQrv~iA~ALa---dvLLLD 131 (813)
..+.+.+ .....+...+.++...... + .......+|+||++||+|++ ++||+|
T Consensus 72 ~~~i~~~~q-~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 150 (201)
T cd03231 72 ARGLLYLGH-APGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILD 150 (201)
T ss_pred hhheEEecc-ccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 0111221 1111122233333211100 0 00111224999999999999 999999
Q ss_pred cCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcc
Q 003528 132 MWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEP 183 (813)
Q Consensus 132 EPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~ 183 (813)
|||++||+.. ...+.+.+.++.++ |.|+|++|||....+..+.+.
T Consensus 151 EPt~~LD~~~------~~~l~~~l~~~~~~-g~tiii~sH~~~~~~~~~~~~ 195 (201)
T cd03231 151 EPTTALDKAG------VARFAEAMAGHCAR-GGMVVLTTHQDLGLSEAGARE 195 (201)
T ss_pred CCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEecCchhhhhcccee
Confidence 9999999999 99999999988654 889999999997766544433
No 236
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.9e-23 Score=220.79 Aligned_cols=181 Identities=17% Similarity=0.140 Sum_probs=131.6
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCC--CCCeeee-------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA--FKGRSQT------- 77 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p--~sG~~q~------- 77 (813)
+.+|+++|+++.|++ ..+++++||++ .+|++++|+|+|||||||||++|+|+.+.. .| ++|+..-
T Consensus 5 ~~~l~~~~l~~~~~~---~~il~~isl~i--~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~-~~~~~~G~i~~~g~~i~~ 78 (259)
T PRK14260 5 IPAIKVKDLSFYYNT---SKAIEGISMDI--YRNKVTAIIGPSGCGKSTFIKTLNRISELE-GPVKVEGVVDFFGQNIYD 78 (259)
T ss_pred cceEEEEEEEEEECC---eEeecceEEEE--cCCCEEEEECCCCCCHHHHHHHHHhhcCcc-cCCccceEEEECCEeccc
Confidence 447999999999975 57999999999 589999999999999999999999998610 01 3676210
Q ss_pred ----------ccceecccccCCCchhHHHHhh--------------------------CCCc------cccccchHHHHH
Q 003528 78 ----------TKGIWMARCAGIEPCTLIMDLE--------------------------GTDG------RERGEDDTAFEK 115 (813)
Q Consensus 78 ----------~~g~~~~~~~~~e~~~~vld~~--------------------------g~~~------~e~~~~~~~~er 115 (813)
..++.++.. ...+ ..+.++. |+.. .........+|+
T Consensus 79 ~~~~~~~~~~~i~~v~q~~-~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 156 (259)
T PRK14260 79 PRININRLRRQIGMVFQRP-NPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQ 156 (259)
T ss_pred cccchHhhhhheEEEeccc-ccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHH
Confidence 011222221 1111 1222221 1100 000011223499
Q ss_pred HHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeec----
Q 003528 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED---- 188 (813)
Q Consensus 116 Qrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~---- 188 (813)
||++||+|++ ++|||||||++||+.. ...+.+.+.++.+ +.|||++|||++.+...+++.+++..
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~--~~tiii~tH~~~~i~~~~d~i~~l~~~~~~ 228 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIA------TMKVEELIHSLRS--ELTIAIVTHNMQQATRVSDFTAFFSTDESR 228 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcCeEEEEeccCCC
Confidence 9999999999 9999999999999999 9999999999864 58999999999998877777666652
Q ss_pred CCeEEEecCcccccC
Q 003528 189 IQKIWDSVPKPQAHM 203 (813)
Q Consensus 189 ~GkI~~~g~~~e~~~ 203 (813)
+|+++..|++.+.+.
T Consensus 229 ~G~i~~~~~~~~~~~ 243 (259)
T PRK14260 229 IGQMVEFGVTTQIFS 243 (259)
T ss_pred CceEEEeCCHHHHhc
Confidence 599999998887654
No 237
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.5e-23 Score=221.42 Aligned_cols=179 Identities=15% Similarity=0.118 Sum_probs=131.1
Q ss_pred CCccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee---------
Q 003528 6 ECCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ--------- 76 (813)
Q Consensus 6 ~~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q--------- 76 (813)
..++|++.|++++|++ ..+++++||++ .+|++++|+|+|||||||||++|+|+.. |++|+..
T Consensus 7 ~~~~i~~~~~~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~iaG~~~----~~~G~v~~~G~~~~~g 77 (257)
T PRK14246 7 AEDVFNISRLYLYIND---KAILKDITIKI--PNNSIFGIMGPSGSGKSTLLKVLNRLIE----IYDSKIKVDGKVLYFG 77 (257)
T ss_pred hhhheeeeeEEEecCC---ceeEeceEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCcCceeEcCEEEECC
Confidence 3468999999999976 67999999999 5899999999999999999999999987 7775421
Q ss_pred ------------eccceecccccCCCchhHHHHhh-------CCCcc-------------------------ccccchHH
Q 003528 77 ------------TTKGIWMARCAGIEPCTLIMDLE-------GTDGR-------------------------ERGEDDTA 112 (813)
Q Consensus 77 ------------~~~g~~~~~~~~~e~~~~vld~~-------g~~~~-------------------------e~~~~~~~ 112 (813)
...++.++.. ...+...+.++. +.... ........
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~-~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~ 156 (257)
T PRK14246 78 KDIFQIDAIKLRKEVGMVFQQP-NPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSG 156 (257)
T ss_pred cccccCCHHHHhcceEEEccCC-ccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCH
Confidence 0011222221 111111122211 11000 00011122
Q ss_pred HHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecC
Q 003528 113 FEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDI 189 (813)
Q Consensus 113 ~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~ 189 (813)
+|+||++||+|++ +++|+||||++||+.. .+.+.+.+.++.+ +.|||+|||+++.+...+++.+++.+
T Consensus 157 G~~qrl~laral~~~P~llllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tiilvsh~~~~~~~~~d~v~~l~~- 227 (257)
T PRK14246 157 GQQQRLTIARALALKPKVLLMDEPTSMIDIVN------SQAIEKLITELKN--EIAIVIVSHNPQQVARVADYVAFLYN- 227 (257)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHhc--CcEEEEEECCHHHHHHhCCEEEEEEC-
Confidence 4999999999999 9999999999999999 9999999999853 58999999999988766666555555
Q ss_pred CeEEEecCcccccC
Q 003528 190 QKIWDSVPKPQAHM 203 (813)
Q Consensus 190 GkI~~~g~~~e~~~ 203 (813)
|++...|++.+++.
T Consensus 228 g~i~~~g~~~~~~~ 241 (257)
T PRK14246 228 GELVEWGSSNEIFT 241 (257)
T ss_pred CEEEEECCHHHHHh
Confidence 99999998776654
No 238
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.4e-23 Score=223.10 Aligned_cols=180 Identities=14% Similarity=0.114 Sum_probs=129.4
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCCeeee---------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFR-EMDAFKGRSQT--------- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~-~m~p~sG~~q~--------- 77 (813)
++|+++|+++.|++ ..+|+++||++ .+|++++|+|+|||||||||++|+|+... ...|++|+..-
T Consensus 23 ~~l~~~~l~~~~~~---~~il~~vsl~i--~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 97 (271)
T PRK14238 23 VVFDTQNLNLWYGE---DHALKNINLDI--HENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKS 97 (271)
T ss_pred eEEEEeeeEEEECC---cceeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccc
Confidence 47999999999975 57999999999 58999999999999999999999999741 00036776210
Q ss_pred --------ccceecccccCCCchhHHHHhh-------CCCcc----c---------------------cccchHHHHHHH
Q 003528 78 --------TKGIWMARCAGIEPCTLIMDLE-------GTDGR----E---------------------RGEDDTAFEKQS 117 (813)
Q Consensus 78 --------~~g~~~~~~~~~e~~~~vld~~-------g~~~~----e---------------------~~~~~~~~erQr 117 (813)
..++.++.. ...+ ..+.++. +.... . .......+|+||
T Consensus 98 ~~~~~~~~~i~~v~q~~-~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qr 175 (271)
T PRK14238 98 YSVEELRTNVGMVFQKP-NPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQR 175 (271)
T ss_pred ccHHHHhhhEEEEecCC-cccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHH
Confidence 112222221 1111 1222221 11100 0 000111249999
Q ss_pred HHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEE
Q 003528 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (813)
Q Consensus 118 v~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~ 194 (813)
++||++|+ ++|||||||++||+.. ...+.+++.++.+ +.|+|++|||++.+...+++.+++ ++|+++.
T Consensus 176 v~laraL~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~--~~tiiivsH~~~~i~~~~d~i~~l-~~G~i~~ 246 (271)
T PRK14238 176 LCIARCLAIEPDVILMDEPTSALDPIS------TLKVEELVQELKK--DYSIIIVTHNMQQAARISDKTAFF-LNGYVNE 246 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHc--CCEEEEEEcCHHHHHHhCCEEEEE-ECCEEEE
Confidence 99999999 9999999999999999 9999999999864 689999999999877656655555 4599999
Q ss_pred ecCcccccC
Q 003528 195 SVPKPQAHM 203 (813)
Q Consensus 195 ~g~~~e~~~ 203 (813)
.|++.+++.
T Consensus 247 ~g~~~~~~~ 255 (271)
T PRK14238 247 YDDTDKIFS 255 (271)
T ss_pred eCCHHHHHc
Confidence 988776544
No 239
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.89 E-value=2.7e-23 Score=240.74 Aligned_cols=174 Identities=13% Similarity=0.083 Sum_probs=130.0
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCC--CCCeeee---------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA--FKGRSQT--------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p--~sG~~q~--------- 77 (813)
+|+++|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ | ++|++.-
T Consensus 1 ~l~i~~l~~~~~~---~~il~~isl~i--~~Ge~~~liG~nGsGKSTLl~~i~G~~~----~~~~~G~i~~~g~~~~~~~ 71 (500)
T TIGR02633 1 LLEMKGIVKTFGG---VKALDGIDLEV--RPGECVGLCGENGAGKSTLMKILSGVYP----HGTWDGEIYWSGSPLKASN 71 (500)
T ss_pred CEEEEeEEEEeCC---eEeecceEEEE--eCCcEEEEECCCCCCHHHHHHHHhCCCC----CCCCCeEEEECCEECCCCC
Confidence 4899999999975 67999999999 5899999999999999999999999986 4 6787310
Q ss_pred -------ccceecccccCCCchhHHHHhh-----------------------------CCCcc---ccccchHHHHHHHH
Q 003528 78 -------TKGIWMARCAGIEPCTLIMDLE-----------------------------GTDGR---ERGEDDTAFEKQSA 118 (813)
Q Consensus 78 -------~~g~~~~~~~~~e~~~~vld~~-----------------------------g~~~~---e~~~~~~~~erQrv 118 (813)
..+++++... ..+...+.++. |+... ........+||||+
T Consensus 72 ~~~~~~~~i~~v~q~~~-~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv 150 (500)
T TIGR02633 72 IRDTERAGIVIIHQELT-LVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLV 150 (500)
T ss_pred HHHHHhCCEEEEeeccc-cCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHH
Confidence 1223333221 11111122211 22110 00112233499999
Q ss_pred HHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEe
Q 003528 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (813)
Q Consensus 119 ~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~ 195 (813)
+||+||+ ++|||||||++||+.. ...+.+.++++.++ |.|||+||||++.+...+++++++.+ |+++..
T Consensus 151 ~iA~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tviiitHd~~~~~~~~d~i~~l~~-G~i~~~ 222 (500)
T TIGR02633 151 EIAKALNKQARLLILDEPSSSLTEKE------TEILLDIIRDLKAH-GVACVYISHKLNEVKAVCDTICVIRD-GQHVAT 222 (500)
T ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCcHHHHHHhCCEEEEEeC-CeEeee
Confidence 9999999 9999999999999999 99999999999754 89999999999988766666666655 999988
Q ss_pred cCccc
Q 003528 196 VPKPQ 200 (813)
Q Consensus 196 g~~~e 200 (813)
+++.+
T Consensus 223 ~~~~~ 227 (500)
T TIGR02633 223 KDMST 227 (500)
T ss_pred cCccc
Confidence 87654
No 240
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.89 E-value=1.4e-23 Score=244.88 Aligned_cols=183 Identities=9% Similarity=0.090 Sum_probs=132.7
Q ss_pred CccEEEEeeeEEeccc--------cccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee--
Q 003528 7 CCSTQLIDGDGTFNVS--------GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ-- 76 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~--------~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q-- 76 (813)
.++|+++|+++.|+.. +.+.+|+++||++ .+|++++|+||||||||||+|+|+|+.+ .+|++.
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i--~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-----~~G~i~~~ 345 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTL--RPGETLGLVGESGSGKSTTGLALLRLIN-----SQGEIWFD 345 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEE--cCCCEEEEECCCCCCHHHHHHHHhCcCC-----CCcEEEEC
Confidence 3479999999999521 0156999999999 5899999999999999999999999973 567621
Q ss_pred ----------------eccceeccccc-CCCchhHHHHhhC---------CCccc---------------------cccc
Q 003528 77 ----------------TTKGIWMARCA-GIEPCTLIMDLEG---------TDGRE---------------------RGED 109 (813)
Q Consensus 77 ----------------~~~g~~~~~~~-~~e~~~~vld~~g---------~~~~e---------------------~~~~ 109 (813)
...+++++... ...+...+.++.. ....+ ....
T Consensus 346 g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 425 (529)
T PRK15134 346 GQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAE 425 (529)
T ss_pred CEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCcc
Confidence 01233333321 1111122222211 11000 0011
Q ss_pred hHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceee
Q 003528 110 DTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 186 (813)
Q Consensus 110 ~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll 186 (813)
...+|||||+||+|++ ++|||||||++||+.. ...+++++.++.++.|.|||+||||++.+...+++++++
T Consensus 426 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l 499 (529)
T PRK15134 426 FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTV------QAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVL 499 (529)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHH------HHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEE
Confidence 1223999999999999 9999999999999999 999999999997655899999999999887666666666
Q ss_pred ecCCeEEEecCcccccC
Q 003528 187 EDIQKIWDSVPKPQAHM 203 (813)
Q Consensus 187 ~~~GkI~~~g~~~e~~~ 203 (813)
.+ |+|+..|++.+++.
T Consensus 500 ~~-G~i~~~~~~~~~~~ 515 (529)
T PRK15134 500 RQ-GEVVEQGDCERVFA 515 (529)
T ss_pred EC-CEEEEEcCHHHHhc
Confidence 55 99999988777654
No 241
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.7e-23 Score=242.92 Aligned_cols=181 Identities=12% Similarity=0.089 Sum_probs=131.5
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---------- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---------- 77 (813)
++|+++|+++.|+..+...+|+++||++ .+|++++|+||||||||||||+|+|+.+ +|++|++.-
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i--~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~~~G~i~~~g~~~~~~~~ 332 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSL--RRGEILGIAGLVGAGRTELVQCLFGAYP---GRWEGEIFIDGKPVKIRNP 332 (506)
T ss_pred ceEEEecCccccccccccccccceeeEE--cCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCcEEEECCEECCCCCH
Confidence 4799999999994211156999999999 5899999999999999999999999986 137787310
Q ss_pred ------ccceeccccc--CCCchhHHHHhh------------------------------CCCc---cccccchHHHHHH
Q 003528 78 ------TKGIWMARCA--GIEPCTLIMDLE------------------------------GTDG---RERGEDDTAFEKQ 116 (813)
Q Consensus 78 ------~~g~~~~~~~--~~e~~~~vld~~------------------------------g~~~---~e~~~~~~~~erQ 116 (813)
..+++++... ...+...+.++. ++.. .........+|||
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kq 412 (506)
T PRK13549 333 QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQ 412 (506)
T ss_pred HHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHH
Confidence 1233333310 111111222221 1100 0001112234999
Q ss_pred HHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEE
Q 003528 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (813)
Q Consensus 117 rv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~ 193 (813)
||+||+|++ ++|||||||++||+.. .+.+++++.++.++ |.|||++|||++.+...|++++++.+ |+|+
T Consensus 413 rv~lA~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tvi~~sHd~~~~~~~~d~v~~l~~-G~i~ 484 (506)
T PRK13549 413 KAVLAKCLLLNPKILILDEPTRGIDVGA------KYEIYKLINQLVQQ-GVAIIVISSELPEVLGLSDRVLVMHE-GKLK 484 (506)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhH------HHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEEEEC-CEEE
Confidence 999999999 9999999999999999 99999999999765 89999999999988776776666655 9999
Q ss_pred EecCcccc
Q 003528 194 DSVPKPQA 201 (813)
Q Consensus 194 ~~g~~~e~ 201 (813)
..++++++
T Consensus 485 ~~~~~~~~ 492 (506)
T PRK13549 485 GDLINHNL 492 (506)
T ss_pred EEeccccC
Confidence 88877654
No 242
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.5e-23 Score=220.69 Aligned_cols=183 Identities=15% Similarity=0.103 Sum_probs=132.6
Q ss_pred CCccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCCeee----e---
Q 003528 6 ECCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFRE-MDAFKGRSQ----T--- 77 (813)
Q Consensus 6 ~~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~-m~p~sG~~q----~--- 77 (813)
..+.+.++++++.|++ ..+++++||++ .+|++++|+|+||||||||+++|+|+.++. ..|.+|+.. .
T Consensus 5 ~~~~~~~~~~~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~ 79 (261)
T PRK14263 5 APIVMDCKLDKIFYGN---FMAVRDSHVPI--RKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYG 79 (261)
T ss_pred CCceEEEEeEEEEeCC---EEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccc
Confidence 4457999999999976 67999999999 589999999999999999999999998610 002578621 0
Q ss_pred ----------ccceecccccCCCchhHHHHhh------------------------CCCcc------ccccchHHHHHHH
Q 003528 78 ----------TKGIWMARCAGIEPCTLIMDLE------------------------GTDGR------ERGEDDTAFEKQS 117 (813)
Q Consensus 78 ----------~~g~~~~~~~~~e~~~~vld~~------------------------g~~~~------e~~~~~~~~erQr 117 (813)
..++.++... .. ...+.++. ++... ........+|+||
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~-~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 80 KGVDPVVVRRYIGMVFQQPN-PF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQR 157 (261)
T ss_pred cccchHhhhhceEEEecCCc-cc-cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHH
Confidence 0122222211 11 11222221 11000 0001122349999
Q ss_pred HHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeee-------
Q 003528 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE------- 187 (813)
Q Consensus 118 v~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~------- 187 (813)
++||+|++ ++||+||||+|||+.. ...+.+++.++. + +.|+|++||+++.+...+++++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~------~~~l~~~l~~~~-~-~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~ 229 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIA------TRRVEELMVELK-K-DYTIALVTHNMQQAIRVADTTAFFSVDISQGT 229 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEeccccccc
Confidence 99999999 9999999999999999 999999999985 3 6899999999998877677777775
Q ss_pred cCCeEEEecCcccccC
Q 003528 188 DIQKIWDSVPKPQAHM 203 (813)
Q Consensus 188 ~~GkI~~~g~~~e~~~ 203 (813)
+.|+++..|++++++.
T Consensus 230 ~~G~i~~~g~~~~~~~ 245 (261)
T PRK14263 230 RTGYLVEMGPTAQIFQ 245 (261)
T ss_pred CCceEEEeCCHHHHHh
Confidence 3599999998777654
No 243
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.2e-23 Score=222.83 Aligned_cols=181 Identities=18% Similarity=0.183 Sum_probs=130.3
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCCeeee--------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFRE-MDAFKGRSQT-------- 77 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~-m~p~sG~~q~-------- 77 (813)
.++|+++|++++|++ ..+|+++||++ .+|++++|+|+|||||||||++|+|+.++. ..|++|++.-
T Consensus 19 ~~~l~i~nl~~~~~~---~~il~~vs~~i--~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 93 (276)
T PRK14271 19 APAMAAVNLTLGFAG---KTVLDQVSMGF--PARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93 (276)
T ss_pred CcEEEEeeEEEEECC---EEEeeeeEEEE--cCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcccc
Confidence 357999999999976 68999999999 589999999999999999999999998610 0025776210
Q ss_pred --------ccceecccccCCCchhHHHHhh--------------------------CCCc------cccccchHHHHHHH
Q 003528 78 --------TKGIWMARCAGIEPCTLIMDLE--------------------------GTDG------RERGEDDTAFEKQS 117 (813)
Q Consensus 78 --------~~g~~~~~~~~~e~~~~vld~~--------------------------g~~~------~e~~~~~~~~erQr 117 (813)
..++.++.. ...+ ..+.++. ++.. .........+|+||
T Consensus 94 ~~~~~~~~~i~~v~q~~-~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qr 171 (276)
T PRK14271 94 RDVLEFRRRVGMLFQRP-NPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQL 171 (276)
T ss_pred chhHHHhhheEEeccCC-ccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHH
Confidence 012222221 1111 1222211 1100 00011122349999
Q ss_pred HHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEE
Q 003528 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (813)
Q Consensus 118 v~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~ 194 (813)
++||+|++ ++|||||||++||+.. ...+++++.++.+ +.|||+||||++.+...+++++++.+ |+|+.
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~------~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~dri~~l~~-G~i~~ 242 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTT------TEKIEEFIRSLAD--RLTVIIVTHNLAQAARISDRAALFFD-GRLVE 242 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEE
Confidence 99999999 9999999999999999 9999999999864 47999999999987766666655555 99999
Q ss_pred ecCcccccC
Q 003528 195 SVPKPQAHM 203 (813)
Q Consensus 195 ~g~~~e~~~ 203 (813)
.|++.+++.
T Consensus 243 ~g~~~~~~~ 251 (276)
T PRK14271 243 EGPTEQLFS 251 (276)
T ss_pred eCCHHHHHh
Confidence 988776543
No 244
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.89 E-value=2.7e-23 Score=247.01 Aligned_cols=177 Identities=17% Similarity=0.178 Sum_probs=136.9
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCee-------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS------------- 75 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~------------- 75 (813)
.|+++|++++|+.++ ..+|+++||++ .+|+.++|+|+||||||||+|+|.|+.. |.+|++
T Consensus 471 ~I~~~nvsf~y~~~~-~~vL~~isL~I--~~Ge~vaIvG~SGsGKSTL~KLL~gly~----p~~G~I~~dg~dl~~i~~~ 543 (709)
T COG2274 471 EIEFENVSFRYGPDD-PPVLEDLSLEI--PPGEKVAIVGRSGSGKSTLLKLLLGLYK----PQQGRILLDGVDLNDIDLA 543 (709)
T ss_pred eEEEEEEEEEeCCCC-cchhhceeEEe--CCCCEEEEECCCCCCHHHHHHHHhcCCC----CCCceEEECCEeHHhcCHH
Confidence 499999999998742 47999999999 5899999999999999999999999998 999992
Q ss_pred --eeccceecccccCCCchhHHHHhhCCC--------------------------------ccccccchHHHHHHHHHHH
Q 003528 76 --QTTKGIWMARCAGIEPCTLIMDLEGTD--------------------------------GRERGEDDTAFEKQSALFA 121 (813)
Q Consensus 76 --q~~~g~~~~~~~~~e~~~~vld~~g~~--------------------------------~~e~~~~~~~~erQrv~iA 121 (813)
+...|++.++..- ..-.+.|+.... -.|.+.....+||||++||
T Consensus 544 ~lR~~ig~V~Q~~~L--f~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalA 621 (709)
T COG2274 544 SLRRQVGYVLQDPFL--FSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALA 621 (709)
T ss_pred HHHhheeEEcccchh--hcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHH
Confidence 1223344333211 011112222111 1233333445599999999
Q ss_pred HHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCc
Q 003528 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (813)
Q Consensus 122 ~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~ 198 (813)
||+. +||||||||++||+.+ .+.|.+.+.++.+ |+|+|+|+|.+..+. .++++++++.|+|+.+|+.
T Consensus 622 RaLl~~P~ILlLDEaTSaLD~~s------E~~I~~~L~~~~~--~~T~I~IaHRl~ti~--~adrIiVl~~Gkiv~~gs~ 691 (709)
T COG2274 622 RALLSKPKILLLDEATSALDPET------EAIILQNLLQILQ--GRTVIIIAHRLSTIR--SADRIIVLDQGKIVEQGSH 691 (709)
T ss_pred HHhccCCCEEEEeCcccccCHhH------HHHHHHHHHHHhc--CCeEEEEEccchHhh--hccEEEEccCCceeccCCH
Confidence 9999 9999999999999999 9999999999864 799999999999887 4455555566999999999
Q ss_pred ccccCC
Q 003528 199 PQAHME 204 (813)
Q Consensus 199 ~e~~~~ 204 (813)
++....
T Consensus 692 ~ell~~ 697 (709)
T COG2274 692 EELLAQ 697 (709)
T ss_pred HHHHHh
Confidence 887643
No 245
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.89 E-value=7.8e-23 Score=217.38 Aligned_cols=177 Identities=17% Similarity=0.082 Sum_probs=129.4
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ---------- 76 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q---------- 76 (813)
+..|+++|++++|+.. ...+++++||++ .+|++++|+|+||||||||+++|+|+.+ |.+|+..
T Consensus 17 ~~~i~~~~l~~~~~~~-~~~il~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~i~g~~i~~~~ 89 (257)
T cd03288 17 GGEIKIHDLCVRYENN-LKPVLKHVKAYI--KPGQKVGICGRTGSGKSSLSLAFFRMVD----IFDGKIVIDGIDISKLP 89 (257)
T ss_pred CceEEEEEEEEEeCCC-CCcceeEEEEEE--cCCCEEEEECCCCCCHHHHHHHHHcccC----CCCCeEEECCEEhhhCC
Confidence 3479999999999652 146999999999 5899999999999999999999999997 8889731
Q ss_pred -----eccceecccccCCCchhHHHHhhCCCcc-------------------------------ccccchHHHHHHHHHH
Q 003528 77 -----TTKGIWMARCAGIEPCTLIMDLEGTDGR-------------------------------ERGEDDTAFEKQSALF 120 (813)
Q Consensus 77 -----~~~g~~~~~~~~~e~~~~vld~~g~~~~-------------------------------e~~~~~~~~erQrv~i 120 (813)
...++.++.. ...+ ..+.++...... ........+|+||++|
T Consensus 90 ~~~~~~~i~~v~q~~-~l~~-~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~l 167 (257)
T cd03288 90 LHTLRSRLSIILQDP-ILFS-GSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCL 167 (257)
T ss_pred HHHHhhhEEEECCCC-cccc-cHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHH
Confidence 0112222222 1111 122222211000 0011223359999999
Q ss_pred HHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecC
Q 003528 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (813)
Q Consensus 121 A~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~ 197 (813)
|+|++ ++||+||||++||+.. ...+++++.++. + +.|+|++||+++.+.. ++++ +.+++|+++..|+
T Consensus 168 aral~~~p~llllDEPt~gLD~~~------~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~-~dri-~~l~~G~i~~~g~ 237 (257)
T cd03288 168 ARAFVRKSSILIMDEATASIDMAT------ENILQKVVMTAF-A-DRTVVTIAHRVSTILD-ADLV-LVLSRGILVECDT 237 (257)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHH------HHHHHHHHHHhc-C-CCEEEEEecChHHHHh-CCEE-EEEECCEEEEeCC
Confidence 99999 9999999999999999 999999999874 3 7899999999998874 5444 4555599999887
Q ss_pred ccccc
Q 003528 198 KPQAH 202 (813)
Q Consensus 198 ~~e~~ 202 (813)
+.++.
T Consensus 238 ~~~~~ 242 (257)
T cd03288 238 PENLL 242 (257)
T ss_pred HHHHH
Confidence 76553
No 246
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.3e-23 Score=227.09 Aligned_cols=187 Identities=15% Similarity=0.157 Sum_probs=133.5
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCCeee----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFRE-MDAFKGRSQ---------- 76 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~-m~p~sG~~q---------- 76 (813)
.+|+++|++++|.+. ...+|+++||++ .+|++++|+|||||||||||++|+|+.... -.|++|++.
T Consensus 79 ~~i~~~nls~~y~~~-~~~~L~~is~~I--~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 79 NVFEIRNFNFWYMNR-TKHVLHDLNLDI--KRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred ceEEEEeeEEEecCC-CceeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 379999999999642 257999999999 589999999999999999999999997510 013567621
Q ss_pred -------eccceecccccC-----CCchhHHHHhhCCCcc-------------------------ccccchHHHHHHHHH
Q 003528 77 -------TTKGIWMARCAG-----IEPCTLIMDLEGTDGR-------------------------ERGEDDTAFEKQSAL 119 (813)
Q Consensus 77 -------~~~g~~~~~~~~-----~e~~~~vld~~g~~~~-------------------------e~~~~~~~~erQrv~ 119 (813)
...+++++.... .+++.+.....+.... +.+.....+||||++
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~ 235 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLC 235 (329)
T ss_pred cchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHH
Confidence 112222222211 1222221110011000 111112234999999
Q ss_pred HHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEec
Q 003528 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (813)
Q Consensus 120 iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g 196 (813)
||||++ +||||||||++||+.. ...+.+.+.++++ +.|+|+|||+++.+...+++++++.+ |+|++.|
T Consensus 236 LARAl~~~p~IlLLDEPts~LD~~~------~~~i~~~i~~l~~--~~Tii~iTH~l~~i~~~~Driivl~~-G~i~e~g 306 (329)
T PRK14257 236 IARAIALEPEVLLMDEPTSALDPIA------TAKIEELILELKK--KYSIIIVTHSMAQAQRISDETVFFYQ-GWIEEAG 306 (329)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHH------HHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEeC
Confidence 999999 9999999999999999 9999999998864 58999999999988765666655555 9999999
Q ss_pred CcccccCCcc
Q 003528 197 PKPQAHMETP 206 (813)
Q Consensus 197 ~~~e~~~~~~ 206 (813)
++.+++.+..
T Consensus 307 ~~~~l~~~~~ 316 (329)
T PRK14257 307 ETKTIFIHPK 316 (329)
T ss_pred CHHHHhcCCC
Confidence 9988875433
No 247
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.89 E-value=3.8e-23 Score=222.14 Aligned_cols=174 Identities=15% Similarity=0.087 Sum_probs=128.2
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee-------------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------- 76 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------- 76 (813)
|+++|+++.|.++ ...+|+++||++ .+|++++|+|+|||||||||++|+|+.+ .+|++.
T Consensus 3 i~~~nls~~~~~~-~~~~l~~isl~I--~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-----~~G~I~i~g~~i~~~~~~~ 74 (275)
T cd03289 3 MTVKDLTAKYTEG-GNAVLENISFSI--SPGQRVGLLGRTGSGKSTLLSAFLRLLN-----TEGDIQIDGVSWNSVPLQK 74 (275)
T ss_pred EEEEEEEEEeCCC-CCcceeceEEEE--cCCCEEEEECCCCCCHHHHHHHHhhhcC-----CCcEEEECCEEhhhCCHHH
Confidence 7899999999532 256999999999 5899999999999999999999999984 468721
Q ss_pred --eccceecccccCCCchhHHHHhh------------------CCCccc-------------cccchHHHHHHHHHHHHH
Q 003528 77 --TTKGIWMARCAGIEPCTLIMDLE------------------GTDGRE-------------RGEDDTAFEKQSALFALA 123 (813)
Q Consensus 77 --~~~g~~~~~~~~~e~~~~vld~~------------------g~~~~e-------------~~~~~~~~erQrv~iA~A 123 (813)
...+++++... ..+ ..+.++. |+.... .+.....+|+||++||+|
T Consensus 75 lr~~i~~v~q~~~-lf~-~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRa 152 (275)
T cd03289 75 WRKAFGVIPQKVF-IFS-GTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARS 152 (275)
T ss_pred HhhhEEEECCCcc-cch-hhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHH
Confidence 01223333221 111 1333333 111000 001123349999999999
Q ss_pred HH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccc
Q 003528 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (813)
Q Consensus 124 La---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e 200 (813)
++ +||||||||++||+.. .+.+.+.+++++. ++|||+|||+++.+.. +++++++ ++|+|+..|++.+
T Consensus 153 ll~~p~illlDEpts~LD~~~------~~~l~~~l~~~~~--~~tii~isH~~~~i~~-~dri~vl-~~G~i~~~g~~~~ 222 (275)
T cd03289 153 VLSKAKILLLDEPSAHLDPIT------YQVIRKTLKQAFA--DCTVILSEHRIEAMLE-CQRFLVI-EENKVRQYDSIQK 222 (275)
T ss_pred HhcCCCEEEEECccccCCHHH------HHHHHHHHHHhcC--CCEEEEEECCHHHHHh-CCEEEEe-cCCeEeecCCHHH
Confidence 99 9999999999999999 9999999998753 7999999999987763 5554444 5599999999888
Q ss_pred ccC
Q 003528 201 AHM 203 (813)
Q Consensus 201 ~~~ 203 (813)
++.
T Consensus 223 l~~ 225 (275)
T cd03289 223 LLN 225 (275)
T ss_pred Hhh
Confidence 765
No 248
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.6e-23 Score=222.72 Aligned_cols=181 Identities=17% Similarity=0.128 Sum_probs=128.7
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCCeeee--------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFRE-MDAFKGRSQT-------- 77 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~-m~p~sG~~q~-------- 77 (813)
.++|+++|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.... ..|++|++.-
T Consensus 37 ~~~l~~~~l~~~~~~---~~il~~vsl~i--~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~ 111 (286)
T PRK14275 37 KPHVVAKNFSIYYGE---FEAVKKVNADI--LSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGK 111 (286)
T ss_pred ceEEEEeeeEEEECC---EEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhc
Confidence 347999999999975 56999999999 589999999999999999999999985200 0026776210
Q ss_pred ---------ccceecccccCCCchhHHHHhh-------CCCcc-------------------------ccccchHHHHHH
Q 003528 78 ---------TKGIWMARCAGIEPCTLIMDLE-------GTDGR-------------------------ERGEDDTAFEKQ 116 (813)
Q Consensus 78 ---------~~g~~~~~~~~~e~~~~vld~~-------g~~~~-------------------------e~~~~~~~~erQ 116 (813)
..+++++... ..+ ..+.++. +.... ........+|+|
T Consensus 112 ~~~~~~~~~~i~~v~q~~~-l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q 189 (286)
T PRK14275 112 FTDEVLLRKKIGMVFQKPN-PFP-KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQ 189 (286)
T ss_pred ccchHHhhhcEEEECCCCC-CCc-cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHH
Confidence 1112222211 111 0222221 11000 000111224999
Q ss_pred HHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEE
Q 003528 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (813)
Q Consensus 117 rv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~ 193 (813)
|++||+||+ ++|||||||++||+.. ...+.+.+.++.+ +.|||++|||++.+...+++++++.+ |+++
T Consensus 190 rv~LAraL~~~p~lllLDEPt~gLD~~~------~~~l~~~L~~~~~--~~tvIivsH~~~~~~~~~d~i~~L~~-G~i~ 260 (286)
T PRK14275 190 RLCVARTLAVEPEILLLDEPTSALDPKA------TAKIEDLIQELRG--SYTIMIVTHNMQQASRVSDYTMFFYE-GVLV 260 (286)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEEC-CEEE
Confidence 999999999 9999999999999999 9999999999864 58999999999988766666655555 9999
Q ss_pred EecCcccccC
Q 003528 194 DSVPKPQAHM 203 (813)
Q Consensus 194 ~~g~~~e~~~ 203 (813)
..|++.+++.
T Consensus 261 ~~g~~~~~~~ 270 (286)
T PRK14275 261 EHAPTAQLFT 270 (286)
T ss_pred EeCCHHHHHh
Confidence 9988766543
No 249
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.89 E-value=2.3e-23 Score=217.94 Aligned_cols=160 Identities=18% Similarity=0.174 Sum_probs=115.6
Q ss_pred eeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----------ccceecccccCCCchhHHHH
Q 003528 28 IKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----------TKGIWMARCAGIEPCTLIMD 97 (813)
Q Consensus 28 L~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----------~~g~~~~~~~~~e~~~~vld 97 (813)
|+++||++ .+|++++|+||||||||||+++|+|+.+ |++|+..- ..+++++. ....+...+.+
T Consensus 1 l~~is~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~v~q~-~~l~~~~tv~e 73 (230)
T TIGR01184 1 LKGVNLTI--QQGEFISLIGHSGCGKSTLLNLISGLAQ----PTSGGVILEGKQITEPGPDRMVVFQN-YSLLPWLTVRE 73 (230)
T ss_pred CCceeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCEECCCCChhheEEecC-cccCCCCCHHH
Confidence 46899999 5899999999999999999999999997 88998321 01222222 12112122222
Q ss_pred hhC---------CCcccc--------------------ccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcCh
Q 003528 98 LEG---------TDGRER--------------------GEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANK 145 (813)
Q Consensus 98 ~~g---------~~~~e~--------------------~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~ 145 (813)
+.. ....+. ......+||||++||+|++ ++|||||||++||+..
T Consensus 74 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~---- 149 (230)
T TIGR01184 74 NIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALT---- 149 (230)
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHH----
Confidence 211 110000 0011123999999999999 9999999999999999
Q ss_pred hhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccc
Q 003528 146 PLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (813)
Q Consensus 146 ~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~ 201 (813)
...+.+.+.++.++.|.|||+||||++.+...+++++++.+ |+++..|+..++
T Consensus 150 --~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~-G~i~~~~~~~~~ 202 (230)
T TIGR01184 150 --RGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTN-GPAANIGQILEV 202 (230)
T ss_pred --HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeC-CcEecccCceec
Confidence 99999999998765589999999999887766666555555 999988765443
No 250
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.89 E-value=8e-23 Score=209.56 Aligned_cols=165 Identities=21% Similarity=0.194 Sum_probs=117.9
Q ss_pred EEEEeeeEEecccc--ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeec--cceeccc
Q 003528 10 TQLIDGDGTFNVSG--IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT--KGIWMAR 85 (813)
Q Consensus 10 Iel~dls~~y~~~~--~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~--~g~~~~~ 85 (813)
|+++|++++|++.. ...+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-. .++..+.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i--~~G~~~~i~G~nG~GKSTLl~~i~G~~~----~~~G~i~~~g~i~~~~q~ 74 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEV--PKGELVAIVGPVGSGKSSLLSALLGELE----KLSGSVSVPGSIAYVSQE 74 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEE--CCCCEEEEECCCCCCHHHHHHHHhCcCC----CCCCeEEEcCEEEEEecC
Confidence 57899999997521 026999999999 5899999999999999999999999997 899984321 2333333
Q ss_pred ccCCCchhHHHHhhCCCc-------------------------------cccccchHHHHHHHHHHHHHHH---hHhhhc
Q 003528 86 CAGIEPCTLIMDLEGTDG-------------------------------RERGEDDTAFEKQSALFALAVS---DIVLIN 131 (813)
Q Consensus 86 ~~~~e~~~~vld~~g~~~-------------------------------~e~~~~~~~~erQrv~iA~ALa---dvLLLD 131 (813)
... .+ ..+.++..... .........+|+||++||+|++ +++|+|
T Consensus 75 ~~l-~~-~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllD 152 (204)
T cd03250 75 PWI-QN-GTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLD 152 (204)
T ss_pred chh-cc-CcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 211 11 12222211100 0011223345999999999999 999999
Q ss_pred cCCCCCCchhhcChhhHHHHHHH-HHHhhcCCCceEEEEeecCCCcccccCcceeeecCCe
Q 003528 132 MWCHDIGREQAANKPLLKTVFQV-MMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (813)
Q Consensus 132 EPtsgLD~~~~a~~~l~~~v~el-l~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~Gk 191 (813)
|||++||+.. .+.+++. +.++.+. |.|+|++||+++.+.. +++++++ ++|+
T Consensus 153 EP~~~LD~~~------~~~l~~~ll~~~~~~-~~tvi~~sh~~~~~~~-~d~i~~l-~~G~ 204 (204)
T cd03250 153 DPLSAVDAHV------GRHIFENCILGLLLN-NKTRILVTHQLQLLPH-ADQIVVL-DNGR 204 (204)
T ss_pred CccccCCHHH------HHHHHHHHHHHhccC-CCEEEEEeCCHHHHhh-CCEEEEE-eCCC
Confidence 9999999998 8889885 5555554 8999999999988875 5555444 4363
No 251
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=5.1e-23 Score=217.49 Aligned_cols=180 Identities=17% Similarity=0.179 Sum_probs=128.4
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCCeee----e----
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFR-EMDAFKGRSQ----T---- 77 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~-~m~p~sG~~q----~---- 77 (813)
|.+|+++|+++.|++ +.+++++||++ .+|++++|+|||||||||||++|+|+... ...|++|+.. .
T Consensus 1 ~~~l~~~~v~~~~~~---~~~l~~~s~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~ 75 (250)
T PRK14266 1 MYRIEVENLNTYFDD---AHILKNVNLDI--PKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDP 75 (250)
T ss_pred CcEEEEEeEEEEeCC---eEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccc
Confidence 347999999999975 67999999999 58999999999999999999999998530 0003677621 0
Q ss_pred ---------ccceecccccCCCchhHHHHhhC-------CCccc-------------------------cccchHHHHHH
Q 003528 78 ---------TKGIWMARCAGIEPCTLIMDLEG-------TDGRE-------------------------RGEDDTAFEKQ 116 (813)
Q Consensus 78 ---------~~g~~~~~~~~~e~~~~vld~~g-------~~~~e-------------------------~~~~~~~~erQ 116 (813)
..++.++.. ...+. .+.++.. ....+ .......+|+|
T Consensus 76 ~~~~~~~~~~i~~~~q~~-~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~q 153 (250)
T PRK14266 76 AVDVVELRKKVGMVFQKP-NPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQ 153 (250)
T ss_pred cccHHHHhhheEEEecCC-ccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHH
Confidence 012222221 11111 2222221 00000 00111224999
Q ss_pred HHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEE
Q 003528 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (813)
Q Consensus 117 rv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~ 193 (813)
|++||+|++ ++||+||||+|||+.. ...+.+++.++.+ +.|||++||+++.+...+++.+++ ++|+++
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~------~~~l~~~l~~~~~--~~tiii~sh~~~~~~~~~~~i~~l-~~G~i~ 224 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPIS------TTKIEDLIHKLKE--DYTIVIVTHNMQQATRVSKYTSFF-LNGEII 224 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHhc--CCeEEEEECCHHHHHhhcCEEEEE-ECCeEE
Confidence 999999999 9999999999999999 9999999999853 789999999999887655444445 459999
Q ss_pred EecCccccc
Q 003528 194 DSVPKPQAH 202 (813)
Q Consensus 194 ~~g~~~e~~ 202 (813)
..|++.++.
T Consensus 225 ~~g~~~~~~ 233 (250)
T PRK14266 225 ESGLTDQIF 233 (250)
T ss_pred EeCCHHHHH
Confidence 999877764
No 252
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.89 E-value=2.7e-23 Score=212.94 Aligned_cols=154 Identities=17% Similarity=0.153 Sum_probs=111.4
Q ss_pred EEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----e----------
Q 003528 12 LIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----T---------- 77 (813)
Q Consensus 12 l~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----~---------- 77 (813)
++|+++.|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+.. .
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~ 71 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTI--EKGKMYAIIGESGSGKSTLLNIIGLLEK----FDSGQVYLNGKETPPLNSKKAS 71 (206)
T ss_pred CcceEEEECC---EEEEeceEEEE--eCCcEEEEECCCCCCHHHHHHHHhcCCC----CCCeEEEECCEEccccchhhHH
Confidence 4689999975 67999999999 5899999999999999999999999997 8889731 0
Q ss_pred -----ccceecccccCCCchhHHHHhh-------CCCcccc--------------------ccchHHHHHHHHHHHHHHH
Q 003528 78 -----TKGIWMARCAGIEPCTLIMDLE-------GTDGRER--------------------GEDDTAFEKQSALFALAVS 125 (813)
Q Consensus 78 -----~~g~~~~~~~~~e~~~~vld~~-------g~~~~e~--------------------~~~~~~~erQrv~iA~ALa 125 (813)
..++.++.. ...+...+.++. +....+. ......+|+||++||+||+
T Consensus 72 ~~~~~~i~~~~q~~-~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~ 150 (206)
T TIGR03608 72 KFRREKLGYLFQNF-ALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAIL 150 (206)
T ss_pred HHHHhCeeEEecch-hhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 011122211 111112222221 1111000 0011123999999999999
Q ss_pred ---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcc
Q 003528 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEP 183 (813)
Q Consensus 126 ---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~ 183 (813)
++|||||||++||+.. ...+.+.++++.++ |.|+|++||+++... .++++
T Consensus 151 ~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tii~~sh~~~~~~-~~d~i 203 (206)
T TIGR03608 151 KDPPLILADEPTGSLDPKN------RDEVLDLLLELNDE-GKTIIIVTHDPEVAK-QADRV 203 (206)
T ss_pred cCCCEEEEeCCcCCCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHh-hcCEE
Confidence 9999999999999999 99999999998764 899999999998654 44443
No 253
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=7.1e-23 Score=216.61 Aligned_cols=180 Identities=13% Similarity=0.135 Sum_probs=126.9
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCC-CCCCeeee-----------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD-AFKGRSQT----------- 77 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~-p~sG~~q~----------- 77 (813)
-+++|++++|++ ..+|+++||++ .+|++++|+|+||||||||+++|+|+....-. |++|+..-
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 80 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDI--YKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTN 80 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccc
Confidence 478999999975 67999999999 58999999999999999999999999741001 35776210
Q ss_pred ------ccceecccccC-----CCchhHHH--------------------HhhCCCcc------ccccchHHHHHHHHHH
Q 003528 78 ------TKGIWMARCAG-----IEPCTLIM--------------------DLEGTDGR------ERGEDDTAFEKQSALF 120 (813)
Q Consensus 78 ------~~g~~~~~~~~-----~e~~~~vl--------------------d~~g~~~~------e~~~~~~~~erQrv~i 120 (813)
..+++++.... .+++.+.. +..|+... ........+|+||++|
T Consensus 81 ~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l 160 (251)
T PRK14244 81 VVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCI 160 (251)
T ss_pred hHHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHH
Confidence 01222222111 11111111 11111100 0001122349999999
Q ss_pred HHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecC
Q 003528 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (813)
Q Consensus 121 A~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~ 197 (813)
|+|++ ++||+||||++||+.. ...+.+++.++. + +.|||++|||++.+...+++++++.+ |+++..|+
T Consensus 161 aral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~l~~-G~i~~~~~ 231 (251)
T PRK14244 161 ARAIAVKPTMLLMDEPCSALDPVA------TNVIENLIQELK-K-NFTIIVVTHSMKQAKKVSDRVAFFQS-GRIVEYNT 231 (251)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhcCEEEEEEC-CEEEEeCC
Confidence 99999 9999999999999999 999999999985 3 79999999999987765665555554 99999888
Q ss_pred cccccC
Q 003528 198 KPQAHM 203 (813)
Q Consensus 198 ~~e~~~ 203 (813)
+.+++.
T Consensus 232 ~~~~~~ 237 (251)
T PRK14244 232 TQEIFK 237 (251)
T ss_pred HHHHhc
Confidence 766544
No 254
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=6.2e-23 Score=223.68 Aligned_cols=181 Identities=15% Similarity=0.144 Sum_probs=130.4
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCCeeee---------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFRE-MDAFKGRSQT--------- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~-m~p~sG~~q~--------- 77 (813)
.+|.+.|+++.|++ ..+|+++||++ .+|++++|+|+|||||||||++|+|+..+. -.|++|++.-
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i--~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~ 118 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDI--PEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDG 118 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 46999999999976 67999999999 589999999999999999999999997410 0046786210
Q ss_pred --------ccceecccccCCCchhHHHHhhCC-------------------Cccc-------------------------
Q 003528 78 --------TKGIWMARCAGIEPCTLIMDLEGT-------------------DGRE------------------------- 105 (813)
Q Consensus 78 --------~~g~~~~~~~~~e~~~~vld~~g~-------------------~~~e------------------------- 105 (813)
..+++++... ..+ ..+.++... ....
T Consensus 119 ~~~~~~~~~i~~v~q~~~-l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 196 (305)
T PRK14264 119 VNLVELRKRVGMVFQSPN-PFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDD 196 (305)
T ss_pred ccHHHHhhceEEEccCCc-ccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcC
Confidence 1122222211 111 112221110 0000
Q ss_pred cccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCc
Q 003528 106 RGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (813)
Q Consensus 106 ~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~ 182 (813)
.......+|+||++||+||+ +||||||||+|||+.. ...+.++|+++.+ +.|||+||||++.+...+++
T Consensus 197 ~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~------~~~l~~~L~~~~~--~~tiiivtH~~~~i~~~~d~ 268 (305)
T PRK14264 197 NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIA------TSKIEDLIEELAE--EYTVVVVTHNMQQAARISDQ 268 (305)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHhc--CCEEEEEEcCHHHHHHhcCE
Confidence 00111224999999999999 9999999999999999 9999999999875 47999999999988766766
Q ss_pred ceeeecCCeEEEecCcccccC
Q 003528 183 PVLREDIQKIWDSVPKPQAHM 203 (813)
Q Consensus 183 ~vll~~~GkI~~~g~~~e~~~ 203 (813)
+++++++|+++..|++.+++.
T Consensus 269 i~~~l~~G~i~~~g~~~~~~~ 289 (305)
T PRK14264 269 TAVFLTGGELVEYDDTDKIFE 289 (305)
T ss_pred EEEEecCCEEEEeCCHHHHHh
Confidence 655556699999988766543
No 255
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=6.4e-23 Score=239.35 Aligned_cols=173 Identities=13% Similarity=0.075 Sum_probs=126.9
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----ccceecc
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----TKGIWMA 84 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----~~g~~~~ 84 (813)
||+++|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.. ..++..+
T Consensus 1 ml~i~~ls~~~~~---~~il~~vsl~i--~~Ge~~~liG~NGsGKSTLl~~l~Gl~~----p~~G~i~~~~~~~i~~~~q 71 (530)
T PRK15064 1 MLSTANITMQFGA---KPLFENISVKF--GGGNRYGLIGANGCGKSTFMKILGGDLE----PSAGNVSLDPNERLGKLRQ 71 (530)
T ss_pred CEEEEEEEEEeCC---cEeEeCCEEEE--CCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEecCCCEEEEEec
Confidence 4899999999975 67999999999 5899999999999999999999999997 88898421 1233333
Q ss_pred cccC------CCchhH--------------------------------------------------HHHhhCCCcc---c
Q 003528 85 RCAG------IEPCTL--------------------------------------------------IMDLEGTDGR---E 105 (813)
Q Consensus 85 ~~~~------~e~~~~--------------------------------------------------vld~~g~~~~---e 105 (813)
.... .+++.+ +++..|+... .
T Consensus 72 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 151 (530)
T PRK15064 72 DQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYG 151 (530)
T ss_pred cCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcC
Confidence 2111 111111 0111122110 0
Q ss_pred cccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCc
Q 003528 106 RGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (813)
Q Consensus 106 ~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~ 182 (813)
.......+|||||+||++|+ ++|||||||++||+.. ...+.+++.+ .|.|||+||||++.+...+++
T Consensus 152 ~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~------~~~l~~~l~~----~~~tiiivsHd~~~~~~~~d~ 221 (530)
T PRK15064 152 LMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINT------IRWLEDVLNE----RNSTMIIISHDRHFLNSVCTH 221 (530)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHH------HHHHHHHHHh----CCCeEEEEeCCHHHHHhhcce
Confidence 11222345999999999999 9999999999999999 9888888864 378999999999988766666
Q ss_pred ceeeecCCeE-EEecCcccc
Q 003528 183 PVLREDIQKI-WDSVPKPQA 201 (813)
Q Consensus 183 ~vll~~~GkI-~~~g~~~e~ 201 (813)
++++.+ |++ +..|++.+.
T Consensus 222 i~~l~~-g~i~~~~g~~~~~ 240 (530)
T PRK15064 222 MADLDY-GELRVYPGNYDEY 240 (530)
T ss_pred EEEEeC-CEEEEecCCHHHH
Confidence 666655 998 467766554
No 256
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=7.1e-23 Score=218.56 Aligned_cols=181 Identities=13% Similarity=0.123 Sum_probs=128.7
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCCeeee---------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFRE-MDAFKGRSQT--------- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~-m~p~sG~~q~--------- 77 (813)
.+|+++|++++|++ +.+|+++||++ .+|++++|+|+|||||||||++|+|+..+. ..+++|++.-
T Consensus 15 ~~l~~~~l~~~~~~---~~vl~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 15 QKSEVNKLNFYYGG---YQALKNINMMV--HEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred ceEEEEEEEEEECC---eeeeeeeEEEE--cCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 46999999999976 57999999999 589999999999999999999999998510 0015676210
Q ss_pred ----------ccceecccccC-----CCchhHHHHhhCCCcc----c---------------------cccchHHHHHHH
Q 003528 78 ----------TKGIWMARCAG-----IEPCTLIMDLEGTDGR----E---------------------RGEDDTAFEKQS 117 (813)
Q Consensus 78 ----------~~g~~~~~~~~-----~e~~~~vld~~g~~~~----e---------------------~~~~~~~~erQr 117 (813)
..++..+.... .+++.+.....+.... + .......+|+||
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 169 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQR 169 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHH
Confidence 01122222111 1111111111111000 0 001112249999
Q ss_pred HHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEE
Q 003528 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (813)
Q Consensus 118 v~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~ 194 (813)
++||+|++ +++|+||||++||+.. ...+.+.+.++.+ +.|+|+|||+++.+...+++++++. +|+++.
T Consensus 170 v~laral~~~p~llllDEPt~gLD~~~------~~~l~~~l~~l~~--~~tiiivth~~~~~~~~~d~i~~l~-~G~i~~ 240 (265)
T PRK14252 170 LCIARALATDPEILLFDEPTSALDPIA------TASIEELISDLKN--KVTILIVTHNMQQAARVSDYTAYMY-MGELIE 240 (265)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHh--CCEEEEEecCHHHHHHhCCEEEEEE-CCEEEE
Confidence 99999999 9999999999999999 9999999999864 6899999999998876666655554 599999
Q ss_pred ecCccccc
Q 003528 195 SVPKPQAH 202 (813)
Q Consensus 195 ~g~~~e~~ 202 (813)
.|+..+.+
T Consensus 241 ~g~~~~~~ 248 (265)
T PRK14252 241 FGATDTIF 248 (265)
T ss_pred eCCHHHHH
Confidence 98876654
No 257
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.2e-23 Score=238.72 Aligned_cols=172 Identities=17% Similarity=0.161 Sum_probs=128.1
Q ss_pred EEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee--------------
Q 003528 12 LIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT-------------- 77 (813)
Q Consensus 12 l~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~-------------- 77 (813)
++|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..-
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i--~~Ge~~~liG~nGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~ 71 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKV--RPHSIHALMGENGAGKSTLLKCLFGIYQ----KDSGSILFQGKEIDFKSSKEAL 71 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEE--cCCcEEEEECCCCCCHHHHHHHHcCCCC----CCceEEEECCEECCCCCHHHHH
Confidence 3689999975 67999999999 5899999999999999999999999997 88887310
Q ss_pred --ccceecccccCCCchhHHHHhhCCC-----c-----cc--------------------cccchHHHHHHHHHHHHHHH
Q 003528 78 --TKGIWMARCAGIEPCTLIMDLEGTD-----G-----RE--------------------RGEDDTAFEKQSALFALAVS 125 (813)
Q Consensus 78 --~~g~~~~~~~~~e~~~~vld~~g~~-----~-----~e--------------------~~~~~~~~erQrv~iA~ALa 125 (813)
..+++++.. ...+...+.++.... . .+ .......+|||||+||+||+
T Consensus 72 ~~~i~~v~q~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 72 ENGISMVHQEL-NLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred hCCEEEEeccc-ccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 112223321 111222333332110 0 00 00111223999999999999
Q ss_pred ---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccc
Q 003528 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (813)
Q Consensus 126 ---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~ 201 (813)
++|||||||++||+.. ...+.+.+.++.+. |.|||+||||++++...+++++++.+ |+|+..+++.+.
T Consensus 151 ~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tvii~tH~~~~~~~~~d~i~~l~~-G~i~~~~~~~~~ 221 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKE------VNHLFTIIRKLKER-GCGIVYISHKMEEIFQLCDEITILRD-GQWIATQPLAGL 221 (491)
T ss_pred hCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEEEEC-CEEEeecChhhC
Confidence 9999999999999999 99999999998754 89999999999988766666655555 999998877654
No 258
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.89 E-value=7.3e-23 Score=212.70 Aligned_cols=162 Identities=19% Similarity=0.204 Sum_probs=116.5
Q ss_pred cEEEEeeeEEeccc---c-ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeec------
Q 003528 9 STQLIDGDGTFNVS---G-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT------ 78 (813)
Q Consensus 9 ~Iel~dls~~y~~~---~-~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~------ 78 (813)
||+++|+++.|+.. + ...+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.-.
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~i~G~~~----~~~G~i~~~~~g~~~ 74 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTV--NAGECVALSGPSGAGKSTLLKSLYANYL----PDSGRILVRHEGAWV 74 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEE--CCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCCeEEEecCCCcc
Confidence 48999999999630 0 146999999999 5899999999999999999999999997 888873211
Q ss_pred -----------------cceecccccCCCchhHHHHhh-------CCCccc---------------------cccchHHH
Q 003528 79 -----------------KGIWMARCAGIEPCTLIMDLE-------GTDGRE---------------------RGEDDTAF 113 (813)
Q Consensus 79 -----------------~g~~~~~~~~~e~~~~vld~~-------g~~~~e---------------------~~~~~~~~ 113 (813)
.+++++. ....+...+.++. +..... .......+
T Consensus 75 ~~~~~~~~~~~~~~~~~i~~~~q~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G 153 (224)
T TIGR02324 75 DLAQASPREVLEVRRKTIGYVSQF-LRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGG 153 (224)
T ss_pred chhhcCHHHHHHHHhcceEEEecc-cccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHH
Confidence 1122222 1111111122111 111000 01112224
Q ss_pred HHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcce
Q 003528 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPV 184 (813)
Q Consensus 114 erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~v 184 (813)
|+||++||+|++ ++||+||||++||+.. ...+.+.+.++.++ |+|+|+||||++.+...+++++
T Consensus 154 ~~qrl~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~-g~tii~vsH~~~~~~~~~d~i~ 220 (224)
T TIGR02324 154 EQQRVNIARGFIADYPILLLDEPTASLDAAN------RQVVVELIAEAKAR-GAALIGIFHDEEVRELVADRVM 220 (224)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcceeE
Confidence 999999999999 9999999999999999 99999999998754 8999999999987765555443
No 259
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.89 E-value=8.2e-23 Score=212.00 Aligned_cols=169 Identities=18% Similarity=0.184 Sum_probs=119.6
Q ss_pred EEEEeeeEEecccc-ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-----------
Q 003528 10 TQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----------- 77 (813)
Q Consensus 10 Iel~dls~~y~~~~-~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----------- 77 (813)
|+++|+++.|++.. ...+++++||++ .+|++++|+|+||||||||+++|+|+.+ |++|+..-
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i--~~G~~~~I~G~nGsGKStLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~ 75 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEI--NPGEIVILTGPSGSGKTTLLTLIGGLRS----VQEGSLKVLGQELYGASEK 75 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEECCEEhHhcCHh
Confidence 78999999996411 156999999999 5899999999999999999999999997 88897311
Q ss_pred -------ccceecccccC------CCchhHHHHhhC-CCccc---c-----------------ccchHHHHHHHHHHHHH
Q 003528 78 -------TKGIWMARCAG------IEPCTLIMDLEG-TDGRE---R-----------------GEDDTAFEKQSALFALA 123 (813)
Q Consensus 78 -------~~g~~~~~~~~------~e~~~~vld~~g-~~~~e---~-----------------~~~~~~~erQrv~iA~A 123 (813)
..+++++.... .++..+.....+ ....+ + ......+|+||++||++
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~lara 155 (220)
T TIGR02982 76 ELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARA 155 (220)
T ss_pred HHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHH
Confidence 11222222111 111111111111 11000 0 00111239999999999
Q ss_pred HH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeE
Q 003528 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (813)
Q Consensus 124 La---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI 192 (813)
++ ++||+||||++||+.. ...+.+.+.++.++.+.|+|++|||++.. ..+++++++ ++|++
T Consensus 156 l~~~p~illlDEP~~~LD~~~------~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l-~~g~~ 219 (220)
T TIGR02982 156 LVHRPKLVLADEPTAALDSKS------GRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHM-EDGKL 219 (220)
T ss_pred HhcCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEE-ECCEE
Confidence 99 9999999999999999 99999999998765589999999999854 455555555 44875
No 260
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.89 E-value=8.3e-23 Score=239.71 Aligned_cols=173 Identities=14% Similarity=0.084 Sum_probs=127.8
Q ss_pred ccEEEEeeeEEec-cccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----cccee
Q 003528 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----TKGIW 82 (813)
Q Consensus 8 ~~Iel~dls~~y~-~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----~~g~~ 82 (813)
+||+++|++++|+ + +.+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.- ..|.+
T Consensus 5 ~~l~i~~l~~~y~~~---~~il~~vs~~i--~~Ge~~~iiG~NGsGKSTLlk~i~G~~~----p~~G~i~~~~~~~i~~v 75 (556)
T PRK11819 5 YIYTMNRVSKVVPPK---KQILKDISLSF--FPGAKIGVLGLNGAGKSTLLRIMAGVDK----EFEGEARPAPGIKVGYL 75 (556)
T ss_pred EEEEEeeEEEEeCCC---CeeeeCceEEE--CCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEecCCCEEEEE
Confidence 4799999999997 4 67999999999 5899999999999999999999999997 88998531 23444
Q ss_pred cccccCCCchhHHHHhh-------------------------------------------------------------CC
Q 003528 83 MARCAGIEPCTLIMDLE-------------------------------------------------------------GT 101 (813)
Q Consensus 83 ~~~~~~~e~~~~vld~~-------------------------------------------------------------g~ 101 (813)
.+.... .+...+.++. |+
T Consensus 76 ~Q~~~~-~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 154 (556)
T PRK11819 76 PQEPQL-DPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRC 154 (556)
T ss_pred ecCCCC-CCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCC
Confidence 443221 1111111111 01
Q ss_pred Cc-cccccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcc
Q 003528 102 DG-RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (813)
Q Consensus 102 ~~-~e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~ 177 (813)
.. .........+|||||+||+|++ ++|||||||++||+.. ...+.+.+.++. .|||+||||++.+.
T Consensus 155 ~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~------~~~l~~~L~~~~----~tviiisHd~~~~~ 224 (556)
T PRK11819 155 PPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAES------VAWLEQFLHDYP----GTVVAVTHDRYFLD 224 (556)
T ss_pred CcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHH------HHHHHHHHHhCC----CeEEEEeCCHHHHH
Confidence 00 0001112235999999999999 9999999999999999 999999998862 49999999999887
Q ss_pred cccCcceeeecCCeEE-EecCcccc
Q 003528 178 LENLEPVLREDIQKIW-DSVPKPQA 201 (813)
Q Consensus 178 ~~~~~~vll~~~GkI~-~~g~~~e~ 201 (813)
..+++++++.+ |+++ ..|+..+.
T Consensus 225 ~~~d~i~~l~~-g~i~~~~g~~~~~ 248 (556)
T PRK11819 225 NVAGWILELDR-GRGIPWEGNYSSW 248 (556)
T ss_pred hhcCeEEEEeC-CEEEEecCCHHHH
Confidence 66666655554 9986 56665543
No 261
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.88 E-value=8.7e-23 Score=205.71 Aligned_cols=141 Identities=21% Similarity=0.099 Sum_probs=112.2
Q ss_pred EeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccccCCCch
Q 003528 13 IDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPC 92 (813)
Q Consensus 13 ~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~~~~e~~ 92 (813)
.|++++|++ ..++++ +|++ .+|++++|+||||||||||+|+|+|+.+ |++|++.- .|.-+.
T Consensus 4 ~~l~~~~~~---~~~l~~-~~~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~-~g~~i~-------- 64 (177)
T cd03222 4 PDCVKRYGV---FFLLVE-LGVV--KEGEVIGIVGPNGTGKTTAVKILAGQLI----PNGDNDEW-DGITPV-------- 64 (177)
T ss_pred CCeEEEECC---EEEEcc-CcEE--CCCCEEEEECCCCChHHHHHHHHHcCCC----CCCcEEEE-CCEEEE--------
Confidence 478999976 678888 4899 5899999999999999999999999998 89998421 111000
Q ss_pred hHHHHhhCCCccccccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEE
Q 003528 93 TLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFV 169 (813)
Q Consensus 93 ~~vld~~g~~~~e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~V 169 (813)
++.+ .. ....+||||+++|++++ +++|+||||++||+.. ...+.+.+.++.++.+.|+|+|
T Consensus 65 -~~~q-------~~--~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~------~~~l~~~l~~~~~~~~~tiiiv 128 (177)
T cd03222 65 -YKPQ-------YI--DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQ------RLNAARAIRRLSEEGKKTALVV 128 (177)
T ss_pred -EEcc-------cC--CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH------HHHHHHHHHHHHHcCCCEEEEE
Confidence 0000 00 05677999999999999 9999999999999999 9999999999876534899999
Q ss_pred eecCCCcccccCcceeeec
Q 003528 170 IRDKTRTPLENLEPVLRED 188 (813)
Q Consensus 170 tHD~~~~~~~~~~~vll~~ 188 (813)
|||++.+...+++.+++.+
T Consensus 129 sH~~~~~~~~~d~i~~l~~ 147 (177)
T cd03222 129 EHDLAVLDYLSDRIHVFEG 147 (177)
T ss_pred ECCHHHHHHhCCEEEEEcC
Confidence 9999888766666665554
No 262
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.88 E-value=1.1e-22 Score=211.88 Aligned_cols=176 Identities=14% Similarity=0.054 Sum_probs=123.4
Q ss_pred cEEEEeeeEEecccc-ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee-----------
Q 003528 9 STQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----------- 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~-~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----------- 76 (813)
.+++.|++++|.+.+ .+.+++++||++ .+|++++|+||||||||||+++|+|+.+.. .|++|+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i--~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~-~~~~G~i~~~g~~~~~~~~ 79 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHV--ESGQVMAILGSSGSGKTTLLDAISGRVEGG-GTTSGQILFNGQPRKPDQF 79 (226)
T ss_pred cceeecceeeeecCccccccccCceEEE--cCCeEEEEECCCCCCHHHHHHHHhCccCCC-CCCceEEEECCEECChHHh
Confidence 467999999997521 257999999999 589999999999999999999999998410 14677621
Q ss_pred -eccceecccccCCCchhHHHHhh-------CCCc---cc---cc------------------cchHHHHHHHHHHHHHH
Q 003528 77 -TTKGIWMARCAGIEPCTLIMDLE-------GTDG---RE---RG------------------EDDTAFEKQSALFALAV 124 (813)
Q Consensus 77 -~~~g~~~~~~~~~e~~~~vld~~-------g~~~---~e---~~------------------~~~~~~erQrv~iA~AL 124 (813)
...++.++.. ...+...+.++. +... .. +. .....+|+||++||+++
T Consensus 80 ~~~i~~~~q~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 80 QKCVAYVRQDD-ILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred cccEEEeCCCC-ccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHH
Confidence 1112222221 111111222211 1000 00 00 01112399999999999
Q ss_pred H---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecC-CCcccccCcceeeecCCeEEEec
Q 003528 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDK-TRTPLENLEPVLREDIQKIWDSV 196 (813)
Q Consensus 125 a---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~-~~~~~~~~~~vll~~~GkI~~~g 196 (813)
+ ++||+||||+|||+.. ...+.+++.++.+. |.|+|++||++ +.+...+++++++.+ |+++..|
T Consensus 159 ~~~p~illlDEP~~gLD~~~------~~~~~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFT------ALNLVSTLSQLARR-NRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHH------HHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 9 9999999999999999 99999999998764 89999999999 466655665555554 9998654
No 263
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.88 E-value=1e-22 Score=207.95 Aligned_cols=151 Identities=10% Similarity=0.041 Sum_probs=111.5
Q ss_pred EEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee------------
Q 003528 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------------ 77 (813)
Q Consensus 10 Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~------------ 77 (813)
|+++|+++.|++ ..+|+++||++ .+|++++|+||||||||||+++|+|+.+ |++|+..-
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~ 71 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTL--NAGEALQVTGPNGIGKTTLLRILAGLLR----PDSGEVRWNGTALAEQRDEP 71 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEE--cCCcEEEEECCCCCCHHHHHHHHhCCCC----CCccEEEECCEEcccchHHh
Confidence 578999999976 67999999999 5899999999999999999999999997 88897310
Q ss_pred --ccceecccccCCCchhHHHHhhCCC----ccc--c-----------------ccchHHHHHHHHHHHHHHH---hHhh
Q 003528 78 --TKGIWMARCAGIEPCTLIMDLEGTD----GRE--R-----------------GEDDTAFEKQSALFALAVS---DIVL 129 (813)
Q Consensus 78 --~~g~~~~~~~~~e~~~~vld~~g~~----~~e--~-----------------~~~~~~~erQrv~iA~ALa---dvLL 129 (813)
..+.+.+ .....+...+.++.... ..+ + ......+|+||++||+|++ +++|
T Consensus 72 ~~~i~~~~q-~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 150 (198)
T TIGR01189 72 HRNILYLGH-LPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWI 150 (198)
T ss_pred hhheEEecc-CcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 1112222 11111222333322110 000 0 0011123999999999999 9999
Q ss_pred hccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcc
Q 003528 130 INMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (813)
Q Consensus 130 LDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~ 177 (813)
+||||++||+.. ...+.+.+.++.++ |.|+|++||+.....
T Consensus 151 lDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tii~~sH~~~~~~ 191 (198)
T TIGR01189 151 LDEPTTALDKAG------VALLAGLLRAHLAR-GGIVLLTTHQDLGLV 191 (198)
T ss_pred EeCCCcCCCHHH------HHHHHHHHHHHHhC-CCEEEEEEccccccc
Confidence 999999999999 99999999998654 889999999996543
No 264
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.88 E-value=1.3e-22 Score=211.16 Aligned_cols=169 Identities=15% Similarity=0.101 Sum_probs=121.6
Q ss_pred CCccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee--------
Q 003528 6 ECCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT-------- 77 (813)
Q Consensus 6 ~~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~-------- 77 (813)
..++|++.|+++.|++.....+|+++||++ .+|++++|+||||||||||+++|+|+.+ |++|+..-
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~~g~~~~~~ 81 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTL--HPGEVTALVGPSGSGKSTVVALLENFYQ----PQGGQVLLDGKPISQY 81 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCcC----CCCcEEEECCCchHHc
Confidence 346899999999996421136999999999 5899999999999999999999999997 88897310
Q ss_pred -------ccceecccccCCCchhHHHHhhCCCc--------------------------------cccccchHHHHHHHH
Q 003528 78 -------TKGIWMARCAGIEPCTLIMDLEGTDG--------------------------------RERGEDDTAFEKQSA 118 (813)
Q Consensus 78 -------~~g~~~~~~~~~e~~~~vld~~g~~~--------------------------------~e~~~~~~~~erQrv 118 (813)
..++.++.. ...+ ..+.++..... .........+|+||+
T Consensus 82 ~~~~~~~~i~~~~q~~-~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv 159 (226)
T cd03248 82 EHKYLHSKVSLVGQEP-VLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRV 159 (226)
T ss_pred CHHHHHhhEEEEeccc-HHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHH
Confidence 012222221 1111 12333221100 000111122499999
Q ss_pred HHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeE
Q 003528 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (813)
Q Consensus 119 ~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI 192 (813)
+||+|++ ++||+||||++||+.. ...+.+.++++.+ +.|+|++|||++.+. .++ .++..++|++
T Consensus 160 ~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tii~~sh~~~~~~-~~d-~i~~l~~g~i 226 (226)
T cd03248 160 AIARALIRNPQVLILDEATSALDAES------EQQVQQALYDWPE--RRTVLVIAHRLSTVE-RAD-QILVLDGGRI 226 (226)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHcC--CCEEEEEECCHHHHH-hCC-EEEEecCCcC
Confidence 9999999 9999999999999999 9999999999864 589999999998885 354 4444444764
No 265
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.88 E-value=4.7e-23 Score=218.06 Aligned_cols=179 Identities=16% Similarity=0.120 Sum_probs=125.6
Q ss_pred EEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-------------
Q 003528 11 QLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------------- 77 (813)
Q Consensus 11 el~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~------------- 77 (813)
+++|+++. .+|+++||++ .+|++++|+||||||||||+++|+|+.+ + +|+..-
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i--~~Gei~~l~G~nGsGKSTLl~~l~Gl~~----~-~G~i~~~g~~i~~~~~~~~ 67 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEV--RAGEILHLVGPNGAGKSTLLARMAGLLP----G-SGSIQFAGQPLEAWSAAEL 67 (248)
T ss_pred cccccchh-------ceecceEEEE--cCCCEEEEECCCCCCHHHHHHHHcCCCC----C-CeEEEECCEecCcCCHHHH
Confidence 46677764 2799999999 5899999999999999999999999985 4 676210
Q ss_pred --ccceecccccCCCchhHHHHhhCCC------ccc--------------------cccchHHHHHHHHHHHHHHH----
Q 003528 78 --TKGIWMARCAGIEPCTLIMDLEGTD------GRE--------------------RGEDDTAFEKQSALFALAVS---- 125 (813)
Q Consensus 78 --~~g~~~~~~~~~e~~~~vld~~g~~------~~e--------------------~~~~~~~~erQrv~iA~ALa---- 125 (813)
..++.++.. .......+.++.... ..+ .......+|+||++||+|++
T Consensus 68 ~~~i~~v~q~~-~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~ 146 (248)
T PRK03695 68 ARHRAYLSQQQ-TPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWP 146 (248)
T ss_pred hhheEEecccC-ccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 112222221 111122333332211 000 00011123999999999997
Q ss_pred ------hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcc
Q 003528 126 ------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (813)
Q Consensus 126 ------dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~ 199 (813)
++|||||||++||+.. ...+.+++.++.++ |.|||++|||++.+...+++++++.+ |+++..|+..
T Consensus 147 ~~~p~p~llllDEPt~~LD~~~------~~~l~~~L~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~-G~i~~~g~~~ 218 (248)
T PRK03695 147 DINPAGQLLLLDEPMNSLDVAQ------QAALDRLLSELCQQ-GIAVVMSSHDLNHTLRHADRVWLLKQ-GKLLASGRRD 218 (248)
T ss_pred ccCCCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEEEEC-CEEEEECCHH
Confidence 7999999999999999 99999999998754 89999999999987766666665555 9999988876
Q ss_pred cccCCccchhhhc
Q 003528 200 QAHMETPLSEFFN 212 (813)
Q Consensus 200 e~~~~~~l~d~f~ 212 (813)
++.....+.+.|+
T Consensus 219 ~~~~~~~~~~~~~ 231 (248)
T PRK03695 219 EVLTPENLAQVFG 231 (248)
T ss_pred HHhCchHHHHHhC
Confidence 6554433444443
No 266
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=5.8e-23 Score=239.72 Aligned_cols=174 Identities=16% Similarity=0.158 Sum_probs=129.1
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----eccceec
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----TTKGIWM 83 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----~~~g~~~ 83 (813)
.+|+++|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.. |++|++. ...+++.
T Consensus 318 ~~l~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~l~G~NGsGKSTLl~~i~G~~~----p~~G~i~~~~~~~i~~~~ 388 (530)
T PRK15064 318 NALEVENLTKGFDN---GPLFKNLNLLL--EAGERLAIIGENGVGKTTLLRTLVGELE----PDSGTVKWSENANIGYYA 388 (530)
T ss_pred ceEEEEeeEEeeCC---ceeecCcEEEE--CCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEECCceEEEEEc
Confidence 37999999999976 57999999999 5899999999999999999999999997 8899842 1233444
Q ss_pred cccc-CCCchhHHHHhhC--------------------CCc---cccccchHHHHHHHHHHHHHHH---hHhhhccCCCC
Q 003528 84 ARCA-GIEPCTLIMDLEG--------------------TDG---RERGEDDTAFEKQSALFALAVS---DIVLINMWCHD 136 (813)
Q Consensus 84 ~~~~-~~e~~~~vld~~g--------------------~~~---~e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsg 136 (813)
+... ...+...+.++.. +.. .........+||||++||++++ ++|||||||++
T Consensus 389 q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~ 468 (530)
T PRK15064 389 QDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNH 468 (530)
T ss_pred ccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 4321 1222222333221 100 0001111224999999999999 99999999999
Q ss_pred CCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEE-EecCcccc
Q 003528 137 IGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW-DSVPKPQA 201 (813)
Q Consensus 137 LD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~-~~g~~~e~ 201 (813)
||+.. ...+.+.+.++ +.|||+||||++.+...+++++++.+ |+++ ..|++.++
T Consensus 469 LD~~~------~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~-g~i~~~~g~~~~~ 523 (530)
T PRK15064 469 MDMES------IESLNMALEKY----EGTLIFVSHDREFVSSLATRIIEITP-DGVVDFSGTYEEY 523 (530)
T ss_pred CCHHH------HHHHHHHHHHC----CCEEEEEeCCHHHHHHhCCEEEEEEC-CeEEEcCCCHHHH
Confidence 99999 99999999876 34999999999988776666665555 9987 66765544
No 267
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.88 E-value=5.8e-23 Score=238.60 Aligned_cols=174 Identities=11% Similarity=0.122 Sum_probs=128.3
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---------- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---------- 77 (813)
++|+++|+++.|+ .+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.-
T Consensus 264 ~~l~~~~l~~~~~-----~~l~~isl~i--~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~----p~~G~I~~~g~~~~~~~~ 332 (510)
T PRK09700 264 TVFEVRNVTSRDR-----KKVRDISFSV--CRGEILGFAGLVGSGRTELMNCLFGVDK----RAGGEIRLNGKDISPRSP 332 (510)
T ss_pred cEEEEeCccccCC-----CcccceeEEE--cCCcEEEEECCCCCCHHHHHHHHhCCCc----CCCCeEEECCEECCCCCH
Confidence 3799999998752 3899999999 5899999999999999999999999997 88888310
Q ss_pred ------ccceecccc--cCCCchhHHHHhh----------------------------------CCC-c--cccccchHH
Q 003528 78 ------TKGIWMARC--AGIEPCTLIMDLE----------------------------------GTD-G--RERGEDDTA 112 (813)
Q Consensus 78 ------~~g~~~~~~--~~~e~~~~vld~~----------------------------------g~~-~--~e~~~~~~~ 112 (813)
..+++++.. ....+...+.++. |+. . .........
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 412 (510)
T PRK09700 333 LDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSG 412 (510)
T ss_pred HHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCCh
Confidence 112333321 1111122233322 110 0 000111223
Q ss_pred HHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecC
Q 003528 113 FEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDI 189 (813)
Q Consensus 113 ~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~ 189 (813)
+|||||+||+|++ ++|||||||++||+.. ...+++++.++.++ |.|||+||||++.+...+++++++.+
T Consensus 413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tvi~vsHd~~~~~~~~d~i~~l~~- 484 (510)
T PRK09700 413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGA------KAEIYKVMRQLADD-GKVILMVSSELPEIITVCDRIAVFCE- 484 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHH------HHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhhCCEEEEEEC-
Confidence 4999999999999 9999999999999999 99999999999764 89999999999988776766655555
Q ss_pred CeEEEecCccc
Q 003528 190 QKIWDSVPKPQ 200 (813)
Q Consensus 190 GkI~~~g~~~e 200 (813)
|+|+..++..+
T Consensus 485 G~i~~~~~~~~ 495 (510)
T PRK09700 485 GRLTQILTNRD 495 (510)
T ss_pred CEEEEEecCcc
Confidence 99988776533
No 268
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.88 E-value=1.2e-22 Score=207.92 Aligned_cols=153 Identities=12% Similarity=0.096 Sum_probs=114.0
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-----------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----------- 77 (813)
||+++|++++|++ ..+|+++||++ .+|++++|+||||||||||+++|+|+.+ |++|+..-
T Consensus 1 ml~~~~l~~~~~~---~~il~~~s~~i--~~Ge~~~l~G~nGsGKSTLl~~i~G~~~----~~~G~v~~~g~~~~~~~~~ 71 (200)
T PRK13540 1 MLDVIELDFDYHD---QPLLQQISFHL--PAGGLLHLKGSNGAGKTTLLKLIAGLLN----PEKGEILFERQSIKKDLCT 71 (200)
T ss_pred CEEEEEEEEEeCC---eeEEeeeeEEE--CCCCEEEEECCCCCCHHHHHHHHhcCCC----CCCeeEEECCCccccCHHH
Confidence 4899999999976 67999999999 5899999999999999999999999997 88897310
Q ss_pred ---ccceecccccCCCchhHHHHhhCCC----ccc------------------cccchHHHHHHHHHHHHHHH---hHhh
Q 003528 78 ---TKGIWMARCAGIEPCTLIMDLEGTD----GRE------------------RGEDDTAFEKQSALFALAVS---DIVL 129 (813)
Q Consensus 78 ---~~g~~~~~~~~~e~~~~vld~~g~~----~~e------------------~~~~~~~~erQrv~iA~ALa---dvLL 129 (813)
..+ ++++.....+...+.++.... ..+ .......+|+||++||+|++ ++||
T Consensus 72 ~~~~i~-~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~li 150 (200)
T PRK13540 72 YQKQLC-FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWL 150 (200)
T ss_pred HHhheE-EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 011 111111111222233322110 000 00111224999999999999 9999
Q ss_pred hccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCccc
Q 003528 130 INMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL 178 (813)
Q Consensus 130 LDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~ 178 (813)
+||||++||+.. ...+.+.+.++.+. |.|+|++||+...+..
T Consensus 151 lDEP~~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~ 192 (200)
T PRK13540 151 LDEPLVALDELS------LLTIITKIQEHRAK-GGAVLLTSHQDLPLNK 192 (200)
T ss_pred EeCCCcccCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCchhccc
Confidence 999999999999 99999999998654 8999999999987753
No 269
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.88 E-value=5.3e-23 Score=238.30 Aligned_cols=178 Identities=11% Similarity=0.065 Sum_probs=128.7
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCC-CCCeeee---------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-FKGRSQT--------- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p-~sG~~q~--------- 77 (813)
++|+++|+++.|.+++...+|+++||++ .+|++++|+||||||||||||+|+|+.+ | ++|++.-
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i--~~Ge~~~l~G~NGsGKSTLl~~l~G~~~----p~~~G~i~~~g~~~~~~~ 329 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSL--RRGEILGVAGLVGAGRTELVQALFGAYP----GKFEGNVFINGKPVDIRN 329 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEE--eCCcEEEEeCCCCCCHHHHHHHHhCCCC----CCCCeEEEECCEECCCCC
Confidence 3799999999994211156999999999 5899999999999999999999999986 4 6787321
Q ss_pred -------ccceeccccc--CCCchhHHHHhh------------------------------CCCc---cccccchHHHHH
Q 003528 78 -------TKGIWMARCA--GIEPCTLIMDLE------------------------------GTDG---RERGEDDTAFEK 115 (813)
Q Consensus 78 -------~~g~~~~~~~--~~e~~~~vld~~------------------------------g~~~---~e~~~~~~~~er 115 (813)
..+.+++... ...+...+.++. ++.. .........+||
T Consensus 330 ~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 409 (500)
T TIGR02633 330 PAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQ 409 (500)
T ss_pred HHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHH
Confidence 0123333210 111111121111 1110 000111223499
Q ss_pred HHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeE
Q 003528 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (813)
Q Consensus 116 Qrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI 192 (813)
||++||+|++ ++|||||||++||+.. ...+++++.++.++ |.|||+||||++++...+++++++.+ |+|
T Consensus 410 qrv~la~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tviivsHd~~~~~~~~d~v~~l~~-G~i 481 (500)
T TIGR02633 410 QKAVLAKMLLTNPRVLILDEPTRGVDVGA------KYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVIGE-GKL 481 (500)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhH------HHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEEC-CEE
Confidence 9999999999 9999999999999999 99999999999765 89999999999988876666666655 999
Q ss_pred EEecCcc
Q 003528 193 WDSVPKP 199 (813)
Q Consensus 193 ~~~g~~~ 199 (813)
+..++.+
T Consensus 482 ~~~~~~~ 488 (500)
T TIGR02633 482 KGDFVNH 488 (500)
T ss_pred EEEEccc
Confidence 8877544
No 270
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.88 E-value=4.3e-23 Score=215.66 Aligned_cols=163 Identities=15% Similarity=0.129 Sum_probs=118.0
Q ss_pred eeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCC----CCCeee-------------eccceeccccc-C
Q 003528 27 FIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA----FKGRSQ-------------TTKGIWMARCA-G 88 (813)
Q Consensus 27 vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p----~sG~~q-------------~~~g~~~~~~~-~ 88 (813)
+++++||++ .+|++++|+||||||||||+++|+|+.. | ++|+.. ...+++.+... .
T Consensus 1 ~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~ 74 (230)
T TIGR02770 1 LVQDLNLSL--KRGEVLALVGESGSGKSLTCLAILGLLP----PGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTA 74 (230)
T ss_pred CccceeEEE--cCCCEEEEECCCCCCHHHHHHHHhcCCC----CccCccccEEEECCEechhhhhhhheeEEEecCchhh
Confidence 478999999 5899999999999999999999999997 6 788731 11223333321 1
Q ss_pred CCchhHH-------HHhh------------------CCCc-----cccccchHHHHHHHHHHHHHHH---hHhhhccCCC
Q 003528 89 IEPCTLI-------MDLE------------------GTDG-----RERGEDDTAFEKQSALFALAVS---DIVLINMWCH 135 (813)
Q Consensus 89 ~e~~~~v-------ld~~------------------g~~~-----~e~~~~~~~~erQrv~iA~ALa---dvLLLDEPts 135 (813)
..+...+ .... ++.. .........+|+||++||+|++ ++|||||||+
T Consensus 75 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~ 154 (230)
T TIGR02770 75 FNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTT 154 (230)
T ss_pred cCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 1111111 1111 1110 0011112234999999999999 9999999999
Q ss_pred CCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccccc
Q 003528 136 DIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (813)
Q Consensus 136 gLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~ 202 (813)
+||+.. ...+.+.+.++.++.|+|||++||+++.+...+++++++.+ |++...|++++++
T Consensus 155 ~LD~~~------~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~-G~i~~~~~~~~~~ 214 (230)
T TIGR02770 155 DLDVVN------QARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDD-GRIVERGTVKEIF 214 (230)
T ss_pred ccCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEeCCHHHHH
Confidence 999999 99999999998765589999999999988766666665555 9999998876654
No 271
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.88 E-value=1.3e-22 Score=239.62 Aligned_cols=175 Identities=15% Similarity=0.114 Sum_probs=131.3
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------ 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------ 76 (813)
.|+++|+++.|+++ .++|+++||++ .+|+.++|+|+||||||||+++|+|+.. |++|+..
T Consensus 340 ~i~~~~v~f~y~~~--~~il~~i~l~i--~~Ge~iaIvG~SGsGKSTLl~lL~gl~~----p~~G~I~idg~~i~~~~~~ 411 (592)
T PRK10790 340 RIDIDNVSFAYRDD--NLVLQNINLSV--PSRGFVALVGHTGSGKSTLASLLMGYYP----LTEGEIRLDGRPLSSLSHS 411 (592)
T ss_pred eEEEEEEEEEeCCC--CceeeceeEEE--cCCCEEEEECCCCCCHHHHHHHHhcccC----CCCceEEECCEEhhhCCHH
Confidence 49999999999752 57999999999 5899999999999999999999999997 9999831
Q ss_pred ---eccceecccccCCCchhHHHHhhCCC-----------------------------c--cccccchHHHHHHHHHHHH
Q 003528 77 ---TTKGIWMARCAGIEPCTLIMDLEGTD-----------------------------G--RERGEDDTAFEKQSALFAL 122 (813)
Q Consensus 77 ---~~~g~~~~~~~~~e~~~~vld~~g~~-----------------------------~--~e~~~~~~~~erQrv~iA~ 122 (813)
...+.+.|+...+. .++.+|.... . .+.+.....+||||++|||
T Consensus 412 ~l~~~i~~v~Q~~~lF~--~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialAR 489 (592)
T PRK10790 412 VLRQGVAMVQQDPVVLA--DTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALAR 489 (592)
T ss_pred HHHhheEEEccCCcccc--chHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 11222222221111 1122222111 0 1122233345999999999
Q ss_pred HHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcc
Q 003528 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (813)
Q Consensus 123 ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~ 199 (813)
|+. +||||||||++||+.+ .+.+.+.+.++.+ ++|+|+|||++..... ++++ +.+++|+|++.|+..
T Consensus 490 aLl~~~~illlDEpts~LD~~t------~~~i~~~l~~~~~--~~tvIivtHr~~~l~~-~D~i-i~l~~G~i~~~G~~~ 559 (592)
T PRK10790 490 VLVQTPQILILDEATANIDSGT------EQAIQQALAAVRE--HTTLVVIAHRLSTIVE-ADTI-LVLHRGQAVEQGTHQ 559 (592)
T ss_pred HHHhCCCEEEEeCCcccCCHHH------HHHHHHHHHHHhC--CCEEEEEecchHHHHh-CCEE-EEEECCEEEEEcCHH
Confidence 999 9999999999999999 9999999998864 6899999999987763 4544 455559999999988
Q ss_pred cccC
Q 003528 200 QAHM 203 (813)
Q Consensus 200 e~~~ 203 (813)
++.+
T Consensus 560 ~L~~ 563 (592)
T PRK10790 560 QLLA 563 (592)
T ss_pred HHHh
Confidence 7653
No 272
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=8.1e-23 Score=232.04 Aligned_cols=179 Identities=16% Similarity=0.216 Sum_probs=134.2
Q ss_pred cEEEE--eeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee---------
Q 003528 9 STQLI--DGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT--------- 77 (813)
Q Consensus 9 ~Iel~--dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~--------- 77 (813)
.+++. |+++.|+++ +++++++||++ .+|+.++|+|+||||||||+++|.|+.+ |++|++..
T Consensus 318 ~~ei~~~~l~~~y~~g--~~~l~~l~~t~--~~g~~talvG~SGaGKSTLl~lL~G~~~----~~~G~I~vng~~l~~l~ 389 (559)
T COG4988 318 PIEISLENLSFRYPDG--KPALSDLNLTI--KAGQLTALVGASGAGKSTLLNLLLGFLA----PTQGEIRVNGIDLRDLS 389 (559)
T ss_pred CceeeecceEEecCCC--CcccCCceeEe--cCCcEEEEECCCCCCHHHHHHHHhCcCC----CCCceEEECCccccccC
Confidence 45555 999999874 58999999999 5899999999999999999999999998 89998310
Q ss_pred -----ccceecccccC------CCchh------------HHHHhh----------CCCc--cccccchHHHHHHHHHHHH
Q 003528 78 -----TKGIWMARCAG------IEPCT------------LIMDLE----------GTDG--RERGEDDTAFEKQSALFAL 122 (813)
Q Consensus 78 -----~~g~~~~~~~~------~e~~~------------~vld~~----------g~~~--~e~~~~~~~~erQrv~iA~ 122 (813)
..-.|.++.+. .+|+. -+++.. |++. .+.+.....+|+||+++||
T Consensus 390 ~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLAR 469 (559)
T COG4988 390 PEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALAR 469 (559)
T ss_pred HHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHH
Confidence 01123333322 11111 111111 1111 1233334456999999999
Q ss_pred HHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcc
Q 003528 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (813)
Q Consensus 123 ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~ 199 (813)
|+. +++|+||||++||.++ -..|.+.+.++++ ++|+|+|||++..+. ..|.++.+++|++++.|.+.
T Consensus 470 All~~~~l~llDEpTA~LD~et------E~~i~~~l~~l~~--~ktvl~itHrl~~~~--~~D~I~vld~G~l~~~g~~~ 539 (559)
T COG4988 470 ALLSPASLLLLDEPTAHLDAET------EQIILQALQELAK--QKTVLVITHRLEDAA--DADRIVVLDNGRLVEQGTHE 539 (559)
T ss_pred HhcCCCCEEEecCCccCCCHhH------HHHHHHHHHHHHh--CCeEEEEEcChHHHh--cCCEEEEecCCceeccCCHH
Confidence 999 8999999999999999 9999999999986 589999999998776 34555666669999999988
Q ss_pred cccCCc
Q 003528 200 QAHMET 205 (813)
Q Consensus 200 e~~~~~ 205 (813)
+..++.
T Consensus 540 ~L~~~~ 545 (559)
T COG4988 540 ELSEKQ 545 (559)
T ss_pred HHhhcC
Confidence 876543
No 273
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.4e-22 Score=227.10 Aligned_cols=177 Identities=18% Similarity=0.133 Sum_probs=132.9
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccc--------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-------- 80 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g-------- 80 (813)
.++++|++++|.+. ..++|+|+||++ ..||.++|+|++|||||||+++|.|... |++|+..-...
T Consensus 336 ~l~~~~vsF~y~~~-~~~~L~~~~l~l--~~GEkvAIlG~SGsGKSTllqLl~~~~~----~~~G~i~~~g~~~~~l~~~ 408 (573)
T COG4987 336 ALELRNVSFTYPGQ-QTKALKNFNLTL--AQGEKVAILGRSGSGKSTLLQLLAGAWD----PQQGSITLNGVEIASLDEQ 408 (573)
T ss_pred eeeeccceeecCCC-ccchhhccceee--cCCCeEEEECCCCCCHHHHHHHHHhccC----CCCCeeeECCcChhhCChh
Confidence 58999999999873 357999999999 5899999999999999999999999986 99998421100
Q ss_pred ------eecccccCCCchhHHHHhhCCCc--------------------------------cccccchHHHHHHHHHHHH
Q 003528 81 ------IWMARCAGIEPCTLIMDLEGTDG--------------------------------RERGEDDTAFEKQSALFAL 122 (813)
Q Consensus 81 ------~~~~~~~~~e~~~~vld~~g~~~--------------------------------~e~~~~~~~~erQrv~iA~ 122 (813)
.++.+.... ...++.+|..+.. .+.++....+|+||++|||
T Consensus 409 ~~~e~i~vl~Qr~hl-F~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR 487 (573)
T COG4987 409 ALRETISVLTQRVHL-FSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALAR 487 (573)
T ss_pred hHHHHHhhhccchHH-HHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHH
Confidence 111111110 0112222222211 1223333345999999999
Q ss_pred HHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcc
Q 003528 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (813)
Q Consensus 123 ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~ 199 (813)
+|. +++||||||.|||+.+ -+++++.+.+-.+ |+|+|||||++..+. ..++++++++|+|+++|.+.
T Consensus 488 ~LL~dapl~lLDEPTegLD~~T------E~~vL~ll~~~~~--~kTll~vTHrL~~le--~~drIivl~~Gkiie~G~~~ 557 (573)
T COG4987 488 ALLHDAPLWLLDEPTEGLDPIT------ERQVLALLFEHAE--GKTLLMVTHRLRGLE--RMDRIIVLDNGKIIEEGTHA 557 (573)
T ss_pred HHHcCCCeEEecCCcccCChhh------HHHHHHHHHHHhc--CCeEEEEecccccHh--hcCEEEEEECCeeeecCCHH
Confidence 999 9999999999999999 9999999988764 899999999998776 34555566669999999998
Q ss_pred cccC
Q 003528 200 QAHM 203 (813)
Q Consensus 200 e~~~ 203 (813)
+.+.
T Consensus 558 ~Ll~ 561 (573)
T COG4987 558 ELLA 561 (573)
T ss_pred hhhc
Confidence 8765
No 274
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.88 E-value=1.9e-22 Score=233.16 Aligned_cols=175 Identities=17% Similarity=0.123 Sum_probs=124.1
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCC-CCCeee---------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-FKGRSQ--------- 76 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p-~sG~~q--------- 76 (813)
.++|+++|+++.|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ + ++|+..
T Consensus 258 ~~~l~~~~l~~~~~~---~~il~~vsl~i--~~Ge~~~i~G~NGsGKSTLl~~l~G~~~----~~~~G~i~~~g~~~~~~ 328 (490)
T PRK10938 258 EPRIVLNNGVVSYND---RPILHNLSWQV--NPGEHWQIVGPNGAGKSTLLSLITGDHP----QGYSNDLTLFGRRRGSG 328 (490)
T ss_pred CceEEEeceEEEECC---eeEEeeceEEE--cCCCEEEEECCCCCCHHHHHHHHcCCCC----cccCCeEEEecccCCCC
Confidence 357999999999976 57999999999 5899999999999999999999999875 3 466521
Q ss_pred -------eccceecccccCCCch-hHHHHh-----------------------------hCCCc-c--ccccchHHHHHH
Q 003528 77 -------TTKGIWMARCAGIEPC-TLIMDL-----------------------------EGTDG-R--ERGEDDTAFEKQ 116 (813)
Q Consensus 77 -------~~~g~~~~~~~~~e~~-~~vld~-----------------------------~g~~~-~--e~~~~~~~~erQ 116 (813)
...+++.+........ ..+.++ .|+.. . ........+|||
T Consensus 329 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q 408 (490)
T PRK10938 329 ETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQR 408 (490)
T ss_pred CCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHH
Confidence 0112222221000000 011111 11110 0 000111223999
Q ss_pred HHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEE
Q 003528 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (813)
Q Consensus 117 rv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~ 193 (813)
|++||+|++ ++|||||||+|||+.. ...+.+++.++.++.++|||+||||++++...++++++++++|+|+
T Consensus 409 rv~la~al~~~p~lllLDEPt~gLD~~~------~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~ 482 (490)
T PRK10938 409 LALIVRALVKHPTLLILDEPLQGLDPLN------RQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIY 482 (490)
T ss_pred HHHHHHHHhcCCCEEEEcCccccCCHHH------HHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceE
Confidence 999999999 9999999999999999 9999999999987544679999999998875445555555569987
Q ss_pred Eec
Q 003528 194 DSV 196 (813)
Q Consensus 194 ~~g 196 (813)
...
T Consensus 483 ~~~ 485 (490)
T PRK10938 483 RYV 485 (490)
T ss_pred Eee
Confidence 654
No 275
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.88 E-value=1.7e-22 Score=242.51 Aligned_cols=176 Identities=19% Similarity=0.158 Sum_probs=130.6
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------ 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------ 76 (813)
.|+++|++++|++. .+++|+++||++ .+|+.++|+|+||||||||+|+|+|+.. |++|+..
T Consensus 451 ~I~~~nvsf~Y~~~-~~~vL~~isl~i--~~Ge~vaIvG~sGsGKSTLlklL~gl~~----p~~G~I~idg~~i~~~~~~ 523 (686)
T TIGR03797 451 AIEVDRVTFRYRPD-GPLILDDVSLQI--EPGEFVAIVGPSGSGKSTLLRLLLGFET----PESGSVFYDGQDLAGLDVQ 523 (686)
T ss_pred eEEEEEEEEEcCCC-CccceeeeEEEE--CCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCCEEEECCEEcCcCCHH
Confidence 59999999999642 267999999999 5899999999999999999999999997 9999831
Q ss_pred ---eccceecccccC-----CCchhH-----------HHHhhCCCc-------------cccccchHHHHHHHHHHHHHH
Q 003528 77 ---TTKGIWMARCAG-----IEPCTL-----------IMDLEGTDG-------------RERGEDDTAFEKQSALFALAV 124 (813)
Q Consensus 77 ---~~~g~~~~~~~~-----~e~~~~-----------vld~~g~~~-------------~e~~~~~~~~erQrv~iA~AL 124 (813)
...+.+.|.... .+|+.+ +++..|+.. .+.+.....+||||++||||+
T Consensus 524 ~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAl 603 (686)
T TIGR03797 524 AVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARAL 603 (686)
T ss_pred HHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 122333333211 111111 111111110 122233344599999999999
Q ss_pred H---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccc
Q 003528 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (813)
Q Consensus 125 a---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~ 201 (813)
. ++|||||||++||+.+ .+.+++.++++ ++|+|+|||+++.+.. +++++++ ++|+|++.|+.+++
T Consensus 604 l~~p~iLiLDEpTS~LD~~t------e~~i~~~L~~~----~~T~IiItHr~~~i~~-~D~Iivl-~~G~iv~~G~~~~L 671 (686)
T TIGR03797 604 VRKPRILLFDEATSALDNRT------QAIVSESLERL----KVTRIVIAHRLSTIRN-ADRIYVL-DAGRVVQQGTYDEL 671 (686)
T ss_pred hcCCCEEEEeCCccCCCHHH------HHHHHHHHHHh----CCeEEEEecChHHHHc-CCEEEEE-ECCEEEEECCHHHH
Confidence 9 9999999999999999 99999998876 4699999999987763 5555555 55999999998876
Q ss_pred cC
Q 003528 202 HM 203 (813)
Q Consensus 202 ~~ 203 (813)
.+
T Consensus 672 l~ 673 (686)
T TIGR03797 672 MA 673 (686)
T ss_pred Hh
Confidence 54
No 276
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.8e-22 Score=240.10 Aligned_cols=171 Identities=16% Similarity=0.166 Sum_probs=127.1
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----ccceec
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----TKGIWM 83 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----~~g~~~ 83 (813)
++|++.|+++.|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.. ..|++.
T Consensus 311 ~~l~~~~l~~~y~~---~~il~~isl~i--~~Ge~~~l~G~NGsGKSTLlk~l~G~~~----p~~G~i~~~~~~~igy~~ 381 (638)
T PRK10636 311 PLLKMEKVSAGYGD---RIILDSIKLNL--VPGSRIGLLGRNGAGKSTLIKLLAGELA----PVSGEIGLAKGIKLGYFA 381 (638)
T ss_pred ceEEEEeeEEEeCC---eeeeccceEEE--CCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCCeEEECCCEEEEEec
Confidence 47999999999976 67999999999 5899999999999999999999999997 89998532 234444
Q ss_pred ccc-cCCCchhHHHHhh-------------------CCCcc---ccccchHHHHHHHHHHHHHHH---hHhhhccCCCCC
Q 003528 84 ARC-AGIEPCTLIMDLE-------------------GTDGR---ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDI 137 (813)
Q Consensus 84 ~~~-~~~e~~~~vld~~-------------------g~~~~---e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgL 137 (813)
+.. ........+++.. ++... ........+|||||+||++++ ++|||||||++|
T Consensus 382 Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~L 461 (638)
T PRK10636 382 QHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHL 461 (638)
T ss_pred CcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 432 1111111222211 11100 011112234999999999999 999999999999
Q ss_pred CchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEE-EecCc
Q 003528 138 GREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW-DSVPK 198 (813)
Q Consensus 138 D~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~-~~g~~ 198 (813)
|+.. ...+.++|.++ .| |||+||||++++...+++++++.+ |+|+ ..|+.
T Consensus 462 D~~~------~~~l~~~L~~~---~g-tvi~vSHd~~~~~~~~d~i~~l~~-G~i~~~~g~~ 512 (638)
T PRK10636 462 DLDM------RQALTEALIDF---EG-ALVVVSHDRHLLRSTTDDLYLVHD-GKVEPFDGDL 512 (638)
T ss_pred CHHH------HHHHHHHHHHc---CC-eEEEEeCCHHHHHHhCCEEEEEEC-CEEEEcCCCH
Confidence 9999 99999999886 24 999999999988776766666654 9986 45543
No 277
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.88 E-value=1.7e-22 Score=259.33 Aligned_cols=178 Identities=10% Similarity=0.066 Sum_probs=136.2
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---------- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---------- 77 (813)
.+|+++|++|.|++. .+.+|+++||.+ .+|++++|+||||||||||+|+|+|+.. |++|+..-
T Consensus 1936 ~~L~v~nLsK~Y~~~-~~~aL~~ISf~I--~~GEi~gLLG~NGAGKTTLlkmL~Gll~----ptsG~I~i~G~~i~~~~~ 2008 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT-SSPAVDRLCVGV--RPGECFGLLGVNGAGKTTTFKMLTGDTT----VTSGDATVAGKSILTNIS 2008 (2272)
T ss_pred ceEEEEEEEEEECCC-CceEEEeeEEEE--cCCcEEEEECCCCCcHHHHHHHHhCCCC----CCccEEEECCEECcchHH
Confidence 479999999999751 257999999999 5899999999999999999999999998 89998311
Q ss_pred ----ccceecccccCCCchhHHHHh-------hCCCccccc--------------------cchHHHHHHHHHHHHHHH-
Q 003528 78 ----TKGIWMARCAGIEPCTLIMDL-------EGTDGRERG--------------------EDDTAFEKQSALFALAVS- 125 (813)
Q Consensus 78 ----~~g~~~~~~~~~e~~~~vld~-------~g~~~~e~~--------------------~~~~~~erQrv~iA~ALa- 125 (813)
..|+..+. ....+.+.+.++ .|.+..+.. .....+||||++||+||+
T Consensus 2009 ~~r~~IGy~pQ~-~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~ 2087 (2272)
T TIGR01257 2009 DVHQNMGYCPQF-DAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIG 2087 (2272)
T ss_pred HHhhhEEEEecc-ccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 12233332 222222222222 232211100 111123999999999999
Q ss_pred --hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccc
Q 003528 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (813)
Q Consensus 126 --dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~ 201 (813)
+||||||||+|||+.. ++.+.+++.++.++ |+|||++||+++++...|++++++.+ |+++..|++.++
T Consensus 2088 ~P~VLLLDEPTsGLDp~s------r~~l~~lL~~l~~~-g~TIILtTH~mee~e~lcDrV~IL~~-G~i~~~Gs~q~L 2157 (2272)
T TIGR01257 2088 CPPLVLLDEPTTGMDPQA------RRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMVK-GAFQCLGTIQHL 2157 (2272)
T ss_pred CCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEECCHHHH
Confidence 9999999999999999 99999999998765 89999999999998877777666665 999999988765
No 278
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.88 E-value=2.4e-22 Score=236.78 Aligned_cols=177 Identities=13% Similarity=0.056 Sum_probs=131.8
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------ 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------ 76 (813)
.|+++|++++|++. ..++|+++||++ .+|+.++|+|+||||||||+++|+|+.. |++|+..
T Consensus 341 ~i~~~~vsf~y~~~-~~~il~~i~l~i--~~G~~~aIvG~sGsGKSTLl~ll~gl~~----p~~G~I~i~g~~i~~~~~~ 413 (582)
T PRK11176 341 DIEFRNVTFTYPGK-EVPALRNINFKI--PAGKTVALVGRSGSGKSTIANLLTRFYD----IDEGEILLDGHDLRDYTLA 413 (582)
T ss_pred eEEEEEEEEecCCC-CCccccCceEEe--CCCCEEEEECCCCCCHHHHHHHHHhccC----CCCceEEECCEEhhhcCHH
Confidence 59999999999752 257999999999 5899999999999999999999999997 9999831
Q ss_pred ---eccceecccccCCCchhHHHHhhCCC-------------------------------c--cccccchHHHHHHHHHH
Q 003528 77 ---TTKGIWMARCAGIEPCTLIMDLEGTD-------------------------------G--RERGEDDTAFEKQSALF 120 (813)
Q Consensus 77 ---~~~g~~~~~~~~~e~~~~vld~~g~~-------------------------------~--~e~~~~~~~~erQrv~i 120 (813)
...++..|+... . ..++.++..+. . .+.+.....+||||++|
T Consensus 414 ~~~~~i~~v~Q~~~l-f-~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~L 491 (582)
T PRK11176 414 SLRNQVALVSQNVHL-F-NDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAI 491 (582)
T ss_pred HHHhhceEEccCcee-e-cchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHH
Confidence 111222222111 0 11222222111 0 11222334459999999
Q ss_pred HHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecC
Q 003528 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (813)
Q Consensus 121 A~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~ 197 (813)
|||+. ++||+||||++||+.+ ...+++.+.++.+ ++|+|+|||+++.+. .+++++++ ++|+|++.|+
T Consensus 492 ARall~~~~ililDEptsaLD~~t------~~~i~~~l~~~~~--~~tvI~VtHr~~~~~-~~D~Ii~l-~~g~i~e~g~ 561 (582)
T PRK11176 492 ARALLRDSPILILDEATSALDTES------ERAIQAALDELQK--NRTSLVIAHRLSTIE-KADEILVV-EDGEIVERGT 561 (582)
T ss_pred HHHHHhCCCEEEEECccccCCHHH------HHHHHHHHHHHhC--CCEEEEEecchHHHH-hCCEEEEE-ECCEEEEeCC
Confidence 99999 9999999999999999 9999999998853 689999999998776 35555544 5599999999
Q ss_pred cccccCC
Q 003528 198 KPQAHME 204 (813)
Q Consensus 198 ~~e~~~~ 204 (813)
.+++.+.
T Consensus 562 ~~~l~~~ 568 (582)
T PRK11176 562 HAELLAQ 568 (582)
T ss_pred HHHHHhC
Confidence 8776643
No 279
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.88 E-value=2.1e-22 Score=242.70 Aligned_cols=174 Identities=16% Similarity=0.079 Sum_probs=131.3
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------ 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------ 76 (813)
.|+++|++++|++. .+++|+++||++ .+|+.++|+||||||||||+++|+|+.. |++|+..
T Consensus 477 ~I~~~~vsf~y~~~-~~~vL~~isl~i--~~Ge~vaIvG~sGsGKSTLlklL~gl~~----p~~G~I~idg~~i~~~~~~ 549 (710)
T TIGR03796 477 YVELRNITFGYSPL-EPPLIENFSLTL--QPGQRVALVGGSGSGKSTIAKLVAGLYQ----PWSGEILFDGIPREEIPRE 549 (710)
T ss_pred eEEEEEEEEecCCC-CCCcccceeEEE--cCCCEEEEECCCCCCHHHHHHHHhcCCC----CCCcEEEECCEeHHHCCHH
Confidence 59999999999752 267999999999 5899999999999999999999999997 9999831
Q ss_pred ---eccceecccccCCCchhHHHHhhCCC------------------------------c--cccccchHHHHHHHHHHH
Q 003528 77 ---TTKGIWMARCAGIEPCTLIMDLEGTD------------------------------G--RERGEDDTAFEKQSALFA 121 (813)
Q Consensus 77 ---~~~g~~~~~~~~~e~~~~vld~~g~~------------------------------~--~e~~~~~~~~erQrv~iA 121 (813)
...+++.|+.... ..++.++..+. . .+.+.....+||||++||
T Consensus 550 ~lr~~i~~v~Q~~~lf--~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLA 627 (710)
T TIGR03796 550 VLANSVAMVDQDIFLF--EGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIA 627 (710)
T ss_pred HHHhheeEEecCChhh--hccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHH
Confidence 1223333322110 11222222111 0 122233344599999999
Q ss_pred HHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCc
Q 003528 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (813)
Q Consensus 122 ~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~ 198 (813)
||+. ++|||||||++||+.+ .+.+++.+.+ .++|+|+|||+++.+.. +++++++ ++|+|++.|+.
T Consensus 628 Rall~~p~iliLDEptS~LD~~t------e~~i~~~l~~----~~~T~IiitHrl~~i~~-~D~Iivl-~~G~i~~~G~~ 695 (710)
T TIGR03796 628 RALVRNPSILILDEATSALDPET------EKIIDDNLRR----RGCTCIIVAHRLSTIRD-CDEIIVL-ERGKVVQRGTH 695 (710)
T ss_pred HHHhhCCCEEEEECccccCCHHH------HHHHHHHHHh----cCCEEEEEecCHHHHHh-CCEEEEE-eCCEEEEecCH
Confidence 9999 9999999999999999 9999999876 27899999999988763 5555555 55999999998
Q ss_pred ccccC
Q 003528 199 PQAHM 203 (813)
Q Consensus 199 ~e~~~ 203 (813)
+++.+
T Consensus 696 ~~Ll~ 700 (710)
T TIGR03796 696 EELWA 700 (710)
T ss_pred HHHHH
Confidence 88764
No 280
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.88 E-value=3.1e-22 Score=238.22 Aligned_cols=173 Identities=14% Similarity=0.108 Sum_probs=124.1
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccc---eecc
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG---IWMA 84 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g---~~~~ 84 (813)
+||++.|++++|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|++....+ .++.
T Consensus 2 ~~l~i~~ls~~~~~---~~il~~is~~i--~~Ge~v~LvG~NGsGKSTLLriiaG~~~----p~~G~I~~~~~~~~~~l~ 72 (635)
T PRK11147 2 SLISIHGAWLSFSD---APLLDNAELHI--EDNERVCLVGRNGAGKSTLMKILNGEVL----LDDGRIIYEQDLIVARLQ 72 (635)
T ss_pred cEEEEeeEEEEeCC---ceeEeCcEEEE--CCCCEEEEECCCCCCHHHHHHHHcCCCC----CCCeEEEeCCCCEEEEec
Confidence 47999999999976 67999999999 5899999999999999999999999987 88898432111 1111
Q ss_pred cccCCCchhHH-----------------------------------------------------------HHhhCCCccc
Q 003528 85 RCAGIEPCTLI-----------------------------------------------------------MDLEGTDGRE 105 (813)
Q Consensus 85 ~~~~~e~~~~v-----------------------------------------------------------ld~~g~~~~e 105 (813)
+........++ ++..|+....
T Consensus 73 q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~ 152 (635)
T PRK11147 73 QDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDA 152 (635)
T ss_pred cCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCC
Confidence 11000000000 0000111000
Q ss_pred cccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCc
Q 003528 106 RGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (813)
Q Consensus 106 ~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~ 182 (813)
.......+|||||+||++|+ +||||||||++||+.. ...+.+.+.++ +.|||+||||..++...+++
T Consensus 153 ~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~------~~~L~~~L~~~----~~tvlivsHd~~~l~~~~d~ 222 (635)
T PRK11147 153 ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIET------IEWLEGFLKTF----QGSIIFISHDRSFIRNMATR 222 (635)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHH------HHHHHHHHHhC----CCEEEEEeCCHHHHHHhcCe
Confidence 11112234999999999999 9999999999999999 99999999887 24999999999988766666
Q ss_pred ceeeecCCeEEE-ecCccc
Q 003528 183 PVLREDIQKIWD-SVPKPQ 200 (813)
Q Consensus 183 ~vll~~~GkI~~-~g~~~e 200 (813)
++.+.+ |+++. .|+..+
T Consensus 223 i~~L~~-G~i~~~~g~~~~ 240 (635)
T PRK11147 223 IVDLDR-GKLVSYPGNYDQ 240 (635)
T ss_pred EEEEEC-CEEEEecCCHHH
Confidence 655554 99974 455443
No 281
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.87 E-value=2.2e-22 Score=235.90 Aligned_cols=174 Identities=14% Similarity=0.099 Sum_probs=127.5
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----ccceec
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----TKGIWM 83 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----~~g~~~ 83 (813)
.||+++|++++|+++ +.+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|.+.. ..+++.
T Consensus 3 ~~i~~~nls~~~~~~--~~il~~is~~i--~~Ge~~~liG~NGsGKSTLl~~i~G~~~----p~~G~i~~~~~~~i~~v~ 74 (552)
T TIGR03719 3 YIYTMNRVSKVVPPK--KEILKDISLSF--FPGAKIGVLGLNGAGKSTLLRIMAGVDK----EFNGEARPAPGIKVGYLP 74 (552)
T ss_pred EEEEEeeEEEecCCC--CeeecCceEEE--CCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEecCCCEEEEEe
Confidence 379999999999721 67999999999 5899999999999999999999999997 88998432 233444
Q ss_pred ccccCCCchhHHHHhhC-------------------------------------------------------------CC
Q 003528 84 ARCAGIEPCTLIMDLEG-------------------------------------------------------------TD 102 (813)
Q Consensus 84 ~~~~~~e~~~~vld~~g-------------------------------------------------------------~~ 102 (813)
+... ..+..++.++.. +.
T Consensus 75 Q~~~-~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 153 (552)
T TIGR03719 75 QEPQ-LDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP 153 (552)
T ss_pred ccCC-CCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC
Confidence 4322 111111211110 00
Q ss_pred c-cccccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCccc
Q 003528 103 G-RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL 178 (813)
Q Consensus 103 ~-~e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~ 178 (813)
. .........+||||++||++++ ++|||||||++||+.. ...+.+.+.++ +.|||+||||++.+..
T Consensus 154 ~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~------~~~l~~~L~~~----~~tvIiisHd~~~~~~ 223 (552)
T TIGR03719 154 PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAES------VAWLEQHLQEY----PGTVVAVTHDRYFLDN 223 (552)
T ss_pred cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHH------HHHHHHHHHhC----CCeEEEEeCCHHHHHh
Confidence 0 0001112235999999999999 9999999999999999 99999998876 2499999999998876
Q ss_pred ccCcceeeecCCeEE-EecCcccc
Q 003528 179 ENLEPVLREDIQKIW-DSVPKPQA 201 (813)
Q Consensus 179 ~~~~~vll~~~GkI~-~~g~~~e~ 201 (813)
.+++++++.+ |+++ ..|+..+.
T Consensus 224 ~~d~v~~l~~-g~i~~~~g~~~~~ 246 (552)
T TIGR03719 224 VAGWILELDR-GRGIPWEGNYSSW 246 (552)
T ss_pred hcCeEEEEEC-CEEEEecCCHHHH
Confidence 6666666655 9976 56665544
No 282
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.87 E-value=3.1e-22 Score=240.66 Aligned_cols=175 Identities=19% Similarity=0.137 Sum_probs=132.0
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------ 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------ 76 (813)
.|+++|++++|++. ..++|+++||++ .+|+.++|+|+||||||||+++|+|+.. |++|+..
T Consensus 463 ~I~~~~vsf~Y~~~-~~~vL~~i~l~i--~~G~~iaIvG~sGsGKSTLlklL~gl~~----p~~G~I~idg~~l~~~~~~ 535 (694)
T TIGR03375 463 EIEFRNVSFAYPGQ-ETPALDNVSLTI--RPGEKVAIIGRIGSGKSTLLKLLLGLYQ----PTEGSVLLDGVDIRQIDPA 535 (694)
T ss_pred eEEEEEEEEEeCCC-CccceeeeeEEE--CCCCEEEEECCCCCCHHHHHHHHhcCCC----CCCceEEECCEEhhhCCHH
Confidence 59999999999652 257999999999 5899999999999999999999999997 9999831
Q ss_pred ---eccceecccccCCCchhHHHHhhCCCc--------------------------------cccccchHHHHHHHHHHH
Q 003528 77 ---TTKGIWMARCAGIEPCTLIMDLEGTDG--------------------------------RERGEDDTAFEKQSALFA 121 (813)
Q Consensus 77 ---~~~g~~~~~~~~~e~~~~vld~~g~~~--------------------------------~e~~~~~~~~erQrv~iA 121 (813)
...+++.|.... . ..++.++..+.. .+.+.....+||||++||
T Consensus 536 ~lr~~i~~v~Q~~~l-f-~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalA 613 (694)
T TIGR03375 536 DLRRNIGYVPQDPRL-F-YGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALA 613 (694)
T ss_pred HHHhccEEECCChhh-h-hhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHH
Confidence 122333332211 0 112223222111 122333344599999999
Q ss_pred HHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCc
Q 003528 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (813)
Q Consensus 122 ~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~ 198 (813)
||+. +++||||||++||+.+ .+.+.+.+.++.+ ++|+|+|||+++.+. .+++++++ ++|+|++.|+.
T Consensus 614 Rall~~p~iliLDE~Ts~LD~~t------e~~i~~~l~~~~~--~~T~iiItHrl~~~~-~~D~iivl-~~G~i~e~G~~ 683 (694)
T TIGR03375 614 RALLRDPPILLLDEPTSAMDNRS------EERFKDRLKRWLA--GKTLVLVTHRTSLLD-LVDRIIVM-DNGRIVADGPK 683 (694)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHhC--CCEEEEEecCHHHHH-hCCEEEEE-eCCEEEeeCCH
Confidence 9999 9999999999999999 9999999998863 789999999998765 35555554 55999999987
Q ss_pred cccc
Q 003528 199 PQAH 202 (813)
Q Consensus 199 ~e~~ 202 (813)
++++
T Consensus 684 ~eLl 687 (694)
T TIGR03375 684 DQVL 687 (694)
T ss_pred HHHH
Confidence 7654
No 283
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.87 E-value=6.6e-22 Score=201.65 Aligned_cols=152 Identities=12% Similarity=0.125 Sum_probs=109.8
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeecc---------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~--------- 79 (813)
||+++|++++|++ +.+++ +||++ .+|++++|+|+||||||||+++|+|+.+ |++|+..-..
T Consensus 1 ~l~~~~l~~~~~~---~~l~~-vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~i~~~~~~ 70 (195)
T PRK13541 1 MLSLHQLQFNIEQ---KNLFD-LSITF--LPSAITYIKGANGCGKSSLLRMIAGIMQ----PSSGNIYYKNCNINNIAKP 70 (195)
T ss_pred CeEEEEeeEEECC---cEEEE-EEEEE--cCCcEEEEECCCCCCHHHHHHHHhcCCC----CCCcEEEECCcccChhhhh
Confidence 4889999999965 45555 99999 5899999999999999999999999997 8899832100
Q ss_pred -ceecccccCCCchhHHHHhh--------------------CCCc--cccccchHHHHHHHHHHHHHHH---hHhhhccC
Q 003528 80 -GIWMARCAGIEPCTLIMDLE--------------------GTDG--RERGEDDTAFEKQSALFALAVS---DIVLINMW 133 (813)
Q Consensus 80 -g~~~~~~~~~e~~~~vld~~--------------------g~~~--~e~~~~~~~~erQrv~iA~ALa---dvLLLDEP 133 (813)
-.++++.........+.++. ++.. .........+|+||++||+|++ +++|+|||
T Consensus 71 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP 150 (195)
T PRK13541 71 YCTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEV 150 (195)
T ss_pred hEEeccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 01222211111112222222 1110 0001111224999999999999 99999999
Q ss_pred CCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcc
Q 003528 134 CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (813)
Q Consensus 134 tsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~ 177 (813)
|++||+.. ...+.+++.+..+ .|.|+|++||+.+.+.
T Consensus 151 ~~~LD~~~------~~~l~~~l~~~~~-~~~tiii~sh~~~~i~ 187 (195)
T PRK13541 151 ETNLSKEN------RDLLNNLIVMKAN-SGGIVLLSSHLESSIK 187 (195)
T ss_pred cccCCHHH------HHHHHHHHHHHHh-CCCEEEEEeCCccccc
Confidence 99999999 9999999986654 4899999999998877
No 284
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.87 E-value=2.6e-22 Score=243.16 Aligned_cols=179 Identities=18% Similarity=0.112 Sum_probs=138.3
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCee-------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS------------- 75 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~------------- 75 (813)
.|+++|+.++|+......+|+++||.+ .+|+.++|+|||||||||++++|.++.. |++|++
T Consensus 350 ~ief~nV~FsYPsRpdv~Il~g~sl~i--~~G~~valVG~SGsGKST~i~LL~Rfyd----P~~G~V~idG~di~~~~~~ 423 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRPDVKILKGVSLKI--PSGQTVALVGPSGSGKSTLIQLLARFYD----PTSGEVLIDGEDIRNLNLK 423 (1228)
T ss_pred ceEEEEEEecCCCCCcchhhCCeEEEe--CCCCEEEEECCCCCCHHHHHHHHHHhcC----CCCceEEEcCccchhcchH
Confidence 599999999998754468999999999 5899999999999999999999999996 999982
Q ss_pred --eeccceecccccCCCchhHHHHhhCCCcc--------------------------------ccccchHHHHHHHHHHH
Q 003528 76 --QTTKGIWMARCAGIEPCTLIMDLEGTDGR--------------------------------ERGEDDTAFEKQSALFA 121 (813)
Q Consensus 76 --q~~~g~~~~~~~~~e~~~~vld~~g~~~~--------------------------------e~~~~~~~~erQrv~iA 121 (813)
+...|.+.|.+. -....+.++...... +++-....+||||++||
T Consensus 424 ~lr~~iglV~QePv--lF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIA 501 (1228)
T KOG0055|consen 424 WLRSQIGLVSQEPV--LFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIA 501 (1228)
T ss_pred HHHhhcCeeeechh--hhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHH
Confidence 123344444331 112233444433221 11111222399999999
Q ss_pred HHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCc
Q 003528 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (813)
Q Consensus 122 ~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~ 198 (813)
|||+ +||||||||++||+++ .+.|.++|.+..+ |.|.|+|+|++..+.. .|.++.+++|+|++.|++
T Consensus 502 Ralv~~P~ILLLDEaTSaLD~~s------e~~Vq~ALd~~~~--grTTivVaHRLStIrn--aD~I~v~~~G~IvE~G~h 571 (1228)
T KOG0055|consen 502 RALVRNPKILLLDEATSALDAES------ERVVQEALDKASK--GRTTIVVAHRLSTIRN--ADKIAVMEEGKIVEQGTH 571 (1228)
T ss_pred HHHHhCCCEEEecCcccccCHHH------HHHHHHHHHHhhc--CCeEEEEeeehhhhhc--cCEEEEEECCEEEEecCH
Confidence 9999 9999999999999999 8889999988754 7899999999998884 455555555999999999
Q ss_pred ccccCCc
Q 003528 199 PQAHMET 205 (813)
Q Consensus 199 ~e~~~~~ 205 (813)
+|+....
T Consensus 572 ~ELi~~~ 578 (1228)
T KOG0055|consen 572 DELIALG 578 (1228)
T ss_pred HHHHhcc
Confidence 9987643
No 285
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.87 E-value=1e-21 Score=211.81 Aligned_cols=173 Identities=16% Similarity=0.078 Sum_probs=124.8
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee--ccceecc
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT--TKGIWMA 84 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~--~~g~~~~ 84 (813)
.+.|+++|+++. . ..+|+++||++ .+|++++|+|+|||||||||++|+|+.+ |.+|++.- ..++..+
T Consensus 37 ~~~l~i~nls~~--~---~~vL~~vs~~i--~~Ge~~~liG~NGsGKSTLl~~I~Gl~~----p~~G~I~i~g~i~yv~q 105 (282)
T cd03291 37 DNNLFFSNLCLV--G---APVLKNINLKI--EKGEMLAITGSTGSGKTSLLMLILGELE----PSEGKIKHSGRISFSSQ 105 (282)
T ss_pred CCeEEEEEEEEe--c---ccceeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEECCEEEEEeC
Confidence 346999999985 2 56999999999 5899999999999999999999999997 88998421 1222222
Q ss_pred cccCCCchhHHHHhh------------------CCCc-------------cccccchHHHHHHHHHHHHHHH---hHhhh
Q 003528 85 RCAGIEPCTLIMDLE------------------GTDG-------------RERGEDDTAFEKQSALFALAVS---DIVLI 130 (813)
Q Consensus 85 ~~~~~e~~~~vld~~------------------g~~~-------------~e~~~~~~~~erQrv~iA~ALa---dvLLL 130 (813)
... ..+ ..+.++. ++.. .........+|+||++||++++ ++||+
T Consensus 106 ~~~-l~~-~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiL 183 (282)
T cd03291 106 FSW-IMP-GTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLL 183 (282)
T ss_pred ccc-ccc-cCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 211 111 0122221 1100 0001123446999999999999 99999
Q ss_pred ccCCCCCCchhhcChhhHHHHHHHH-HHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccccc
Q 003528 131 NMWCHDIGREQAANKPLLKTVFQVM-MRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (813)
Q Consensus 131 DEPtsgLD~~~~a~~~l~~~v~ell-~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~ 202 (813)
||||++||+.. ...+++.+ .++. + +.|||++|||++.+. .++ .++++++|+++..|+++++.
T Consensus 184 DEPt~gLD~~~------~~~l~~~ll~~~~-~-~~tIiiisH~~~~~~-~~d-~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 184 DSPFGYLDVFT------EKEIFESCVCKLM-A-NKTRILVTSKMEHLK-KAD-KILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred ECCCccCCHHH------HHHHHHHHHHHhh-C-CCEEEEEeCChHHHH-hCC-EEEEEECCEEEEECCHHHHH
Confidence 99999999998 88888865 4553 3 789999999998775 454 55555559999998877654
No 286
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.87 E-value=2.2e-22 Score=218.07 Aligned_cols=184 Identities=16% Similarity=0.165 Sum_probs=141.4
Q ss_pred ccEEEEeeeEEecccc--------ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee---
Q 003528 8 CSTQLIDGDGTFNVSG--------IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ--- 76 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~--------~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q--- 76 (813)
+.++.+|+...|.-.+ ...+++++||++ ..|+-++|+|.+|||||||-.+|.+++. ++|++.
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L--~~gqTlGlVGESGSGKsTlG~allrL~~-----s~G~I~F~G 347 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTL--RRGQTLGLVGESGSGKSTLGLALLRLIP-----SQGEIRFDG 347 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEe--cCCCeEEEEecCCCCcchHHHHHHhhcC-----cCceEEECC
Confidence 4699999999985211 235789999999 5899999999999999999999999995 448721
Q ss_pred ---------------eccceecccccC-CCchhHHHHhhC--C-------CccccccchH--------------------
Q 003528 77 ---------------TTKGIWMARCAG-IEPCTLIMDLEG--T-------DGRERGEDDT-------------------- 111 (813)
Q Consensus 77 ---------------~~~g~~~~~~~~-~e~~~~vld~~g--~-------~~~e~~~~~~-------------------- 111 (813)
...-++|+...+ ..+-+.+.++++ + ...++.++..
T Consensus 348 ~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEF 427 (534)
T COG4172 348 QDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEF 427 (534)
T ss_pred ccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCccc
Confidence 111234554433 334444444331 1 1112211111
Q ss_pred -HHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeee
Q 003528 112 -AFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE 187 (813)
Q Consensus 112 -~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~ 187 (813)
.+||||++||||++ ++++|||||++||..- +.+|++++++|.+++|.+.||||||+..+...|.++++|.
T Consensus 428 SGGQRQRIAIARAliLkP~~i~LDEPTSALD~SV------QaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~ 501 (534)
T COG4172 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSV------QAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMR 501 (534)
T ss_pred CcchhhHHHHHHHHhcCCcEEEecCCchHhhHHH------HHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEe
Confidence 12999999999999 9999999999999999 9999999999999999999999999999887777777777
Q ss_pred cCCeEEEecCcccccCCc
Q 003528 188 DIQKIWDSVPKPQAHMET 205 (813)
Q Consensus 188 ~~GkI~~~g~~~e~~~~~ 205 (813)
+ |+|++.|+..++|.+.
T Consensus 502 ~-GkiVE~G~~~~if~~P 518 (534)
T COG4172 502 D-GKIVEQGPTEAVFANP 518 (534)
T ss_pred C-CEEeeeCCHHHHhcCC
Confidence 7 9999999999887653
No 287
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.87 E-value=4.5e-22 Score=234.79 Aligned_cols=174 Identities=12% Similarity=0.057 Sum_probs=128.6
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------ 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------ 76 (813)
.|+++|+++.|.++ +++|+++||++ .+|+.++|+||||||||||+++|+|+. |++|+..
T Consensus 349 ~i~~~~vsf~~~~~--~~vL~~i~l~i--~~G~~vaIvG~SGsGKSTL~~lL~g~~-----p~~G~I~i~g~~i~~~~~~ 419 (588)
T PRK11174 349 TIEAEDLEILSPDG--KTLAGPLNFTL--PAGQRIALVGPSGAGKTSLLNALLGFL-----PYQGSLKINGIELRELDPE 419 (588)
T ss_pred eEEEEeeEEeccCC--CeeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC-----CCCcEEEECCEecccCCHH
Confidence 49999999766542 67999999999 589999999999999999999999998 4578731
Q ss_pred ---eccceecccccCCCchhHHHHhhCCC------------------------------c--cccccchHHHHHHHHHHH
Q 003528 77 ---TTKGIWMARCAGIEPCTLIMDLEGTD------------------------------G--RERGEDDTAFEKQSALFA 121 (813)
Q Consensus 77 ---~~~g~~~~~~~~~e~~~~vld~~g~~------------------------------~--~e~~~~~~~~erQrv~iA 121 (813)
...+++.|+... . ..++.+|..+. . .+++.....+||||++||
T Consensus 420 ~lr~~i~~v~Q~~~L-F-~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialA 497 (588)
T PRK11174 420 SWRKHLSWVGQNPQL-P-HGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALA 497 (588)
T ss_pred HHHhheEEecCCCcC-C-CcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHH
Confidence 112222222211 0 11222222111 1 122333344599999999
Q ss_pred HHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCc
Q 003528 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (813)
Q Consensus 122 ~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~ 198 (813)
||+. +||||||||++||+.+ .+.+.+.+.++.+ ++|+|+|||+++.+.. +++++++ ++|+|++.|+.
T Consensus 498 RAll~~~~IliLDE~TSaLD~~t------e~~i~~~l~~~~~--~~TvIiItHrl~~i~~-aD~Iivl-~~G~i~e~G~~ 567 (588)
T PRK11174 498 RALLQPCQLLLLDEPTASLDAHS------EQLVMQALNAASR--RQTTLMVTHQLEDLAQ-WDQIWVM-QDGQIVQQGDY 567 (588)
T ss_pred HHHhcCCCEEEEeCCccCCCHHH------HHHHHHHHHHHhC--CCEEEEEecChHHHHh-CCEEEEE-eCCeEeecCCH
Confidence 9999 9999999999999999 9999999988853 7899999999987763 5555555 55999999988
Q ss_pred ccccC
Q 003528 199 PQAHM 203 (813)
Q Consensus 199 ~e~~~ 203 (813)
+++.+
T Consensus 568 ~eL~~ 572 (588)
T PRK11174 568 AELSQ 572 (588)
T ss_pred HHHHh
Confidence 77654
No 288
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.87 E-value=3.8e-22 Score=256.09 Aligned_cols=177 Identities=11% Similarity=0.113 Sum_probs=133.7
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee-----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----------- 76 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----------- 76 (813)
+.|+++|++|.|+++ .+.+++++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I--~~Gei~aLLG~NGAGKSTLLkiLaGLl~----PtsG~I~i~G~dI~~~~~ 999 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITF--YENQITAFLGHNGAGKTTTLSILTGLLP----PTSGTVLVGGKDIETNLD 999 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEE--cCCcEEEEECCCCChHHHHHHHHhcCCC----CCceEEEECCEECcchHH
Confidence 479999999999631 267999999999 5899999999999999999999999998 8999831
Q ss_pred ---eccceecccccCCCchhHHHHh-------hCCCcccc--------------------ccchHHHHHHHHHHHHHHH-
Q 003528 77 ---TTKGIWMARCAGIEPCTLIMDL-------EGTDGRER--------------------GEDDTAFEKQSALFALAVS- 125 (813)
Q Consensus 77 ---~~~g~~~~~~~~~e~~~~vld~-------~g~~~~e~--------------------~~~~~~~erQrv~iA~ALa- 125 (813)
...|...++. ...+.+.+.++ .|....+. ......+||||++||+|++
T Consensus 1000 ~~r~~IG~~pQ~~-~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~ 1078 (2272)
T TIGR01257 1000 AVRQSLGMCPQHN-ILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVG 1078 (2272)
T ss_pred HHhhcEEEEecCC-cCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 0122333322 22222222222 22221110 0111123999999999999
Q ss_pred --hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccc
Q 003528 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (813)
Q Consensus 126 --dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~ 201 (813)
+||||||||+|||+.. ++.+.++++++. + |+|||++|||++++...+++++++.+ |++...|++..+
T Consensus 1079 ~PkVLLLDEPTSGLDp~s------r~~l~~lL~~l~-~-g~TIIltTHdmdea~~laDrI~iL~~-GkL~~~Gs~~~L 1147 (2272)
T TIGR01257 1079 DAKVVVLDEPTSGVDPYS------RRSIWDLLLKYR-S-GRTIIMSTHHMDEADLLGDRIAIISQ-GRLYCSGTPLFL 1147 (2272)
T ss_pred CCCEEEEECCCcCCCHHH------HHHHHHHHHHHh-C-CCEEEEEECCHHHHHHhCCEEEEEEC-CEEEEecCHHHH
Confidence 9999999999999999 999999999984 3 89999999999998876776666655 999999987654
No 289
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.87 E-value=2.6e-22 Score=207.89 Aligned_cols=159 Identities=15% Similarity=0.095 Sum_probs=113.3
Q ss_pred eeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeecccee--cc-------cccCCCchhHHHH
Q 003528 27 FIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW--MA-------RCAGIEPCTLIMD 97 (813)
Q Consensus 27 vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~--~~-------~~~~~e~~~~vld 97 (813)
+|+++||++ .+|++++|+||||||||||+++|+|+.+ |++|+.....+.. +. ..+..++..+...
T Consensus 2 vl~~vs~~i--~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~----~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~ 75 (213)
T PRK15177 2 VLDKTDFVM--GYHEHIGILAAPGSGKTTLTRLLCGLDA----PDEGDFIGLRGDALPLGANSFILPGLTGEENARMMAS 75 (213)
T ss_pred eeeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCcc----CCCCCEEEecCceeccccccccCCcCcHHHHHHHHHH
Confidence 689999999 5899999999999999999999999997 8999853111211 11 1111223333222
Q ss_pred hhCCCccccc-----------------cchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHH
Q 003528 98 LEGTDGRERG-----------------EDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMR 157 (813)
Q Consensus 98 ~~g~~~~e~~-----------------~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~ 157 (813)
..+....+.. .....+||||++||+|++ +++|+|||++++|+.. .+.+.+.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~------~~~~~~~l~~ 149 (213)
T PRK15177 76 LYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNAT------QLRMQAALAC 149 (213)
T ss_pred HcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHH------HHHHHHHHHH
Confidence 2222211100 011123999999999999 9999999999999998 8889988765
Q ss_pred hhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccc
Q 003528 158 LFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (813)
Q Consensus 158 L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e 200 (813)
..+ +.++|++||+++.+...+++.+++.+ |+++..++..+
T Consensus 150 ~~~--~~~ii~vsH~~~~~~~~~d~i~~l~~-G~i~~~~~~~~ 189 (213)
T PRK15177 150 QLQ--QKGLIVLTHNPRLIKEHCHAFGVLLH-GKITMCEDLAQ 189 (213)
T ss_pred Hhh--CCcEEEEECCHHHHHHhcCeeEEEEC-CeEEEeCCHHH
Confidence 433 35799999999887766666666655 99998876544
No 290
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=1e-22 Score=211.92 Aligned_cols=181 Identities=12% Similarity=0.104 Sum_probs=131.7
Q ss_pred ccEEEEeeeEEeccc------------------cccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCC
Q 003528 8 CSTQLIDGDGTFNVS------------------GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD 69 (813)
Q Consensus 8 ~~Iel~dls~~y~~~------------------~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~ 69 (813)
.||.++|++|.|.-. ....+++|+||++ ++|++++++|+|||||||+||+|.|++.
T Consensus 2 ~~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~I--P~G~ivgflGaNGAGKSTtLKmLTGll~---- 75 (325)
T COG4586 2 AMIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEI--PKGEIVGFLGANGAGKSTTLKMLTGLLL---- 75 (325)
T ss_pred ceeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeec--CCCcEEEEEcCCCCcchhhHHHHhCccc----
Confidence 368899999988521 0234789999999 5899999999999999999999999998
Q ss_pred CCCCeeee--------------ccceecccccC-------CCchhHHHHhhCCCcc--------------------cccc
Q 003528 70 AFKGRSQT--------------TKGIWMARCAG-------IEPCTLIMDLEGTDGR--------------------ERGE 108 (813)
Q Consensus 70 p~sG~~q~--------------~~g~~~~~~~~-------~e~~~~vld~~g~~~~--------------------e~~~ 108 (813)
|++|...- ..+..+.+... .+.......++..+.. .+..
T Consensus 76 p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr 155 (325)
T COG4586 76 PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVR 155 (325)
T ss_pred cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhh
Confidence 99998310 11111222111 0111111111111111 1112
Q ss_pred chHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCccee
Q 003528 109 DDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVL 185 (813)
Q Consensus 109 ~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vl 185 (813)
....+||.|+.+|.||. +||+|||||-|||... +..|.+.+++..+++++||+++||+++.+...| ++++
T Consensus 156 ~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~a------q~~ir~Flke~n~~~~aTVllTTH~~~di~~lc-~rv~ 228 (325)
T COG4586 156 KLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNA------QANIREFLKEYNEERQATVLLTTHIFDDIATLC-DRVL 228 (325)
T ss_pred hccchHHHHHHHHHHhcCCCcEEEecCCccCcchhH------HHHHHHHHHHHHHhhCceEEEEecchhhHHHhh-hheE
Confidence 22334999999999999 9999999999999999 999999999999999999999999997766544 5556
Q ss_pred eecCCeEEEecCcccc
Q 003528 186 REDIQKIWDSVPKPQA 201 (813)
Q Consensus 186 l~~~GkI~~~g~~~e~ 201 (813)
+++.|+++.+|+..+.
T Consensus 229 ~I~~Gqlv~dg~l~~l 244 (325)
T COG4586 229 LIDQGQLVFDGTLAQL 244 (325)
T ss_pred EeeCCcEeecccHHHH
Confidence 6666999999987654
No 291
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.87 E-value=5.5e-22 Score=239.00 Aligned_cols=174 Identities=17% Similarity=0.158 Sum_probs=130.7
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------ 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------ 76 (813)
.|+++|++++|+++ .++|+++||++ .+|+.++|+||||||||||+++|+|+.. |++|+..
T Consensus 473 ~I~~~~vsf~y~~~--~~iL~~isl~i--~~G~~vaIvG~SGsGKSTLlklL~gl~~----p~~G~I~idg~~i~~~~~~ 544 (708)
T TIGR01193 473 DIVINDVSYSYGYG--SNILSDISLTI--KMNSKTTIVGMSGSGKSTLAKLLVGFFQ----ARSGEILLNGFSLKDIDRH 544 (708)
T ss_pred cEEEEEEEEEcCCC--CcceeceeEEE--CCCCEEEEECCCCCCHHHHHHHHhccCC----CCCcEEEECCEEHHHcCHH
Confidence 59999999999742 67999999999 5899999999999999999999999997 9999831
Q ss_pred ---eccceecccccCCCchhHHHHhhCCC-------------------------------c--cccccchHHHHHHHHHH
Q 003528 77 ---TTKGIWMARCAGIEPCTLIMDLEGTD-------------------------------G--RERGEDDTAFEKQSALF 120 (813)
Q Consensus 77 ---~~~g~~~~~~~~~e~~~~vld~~g~~-------------------------------~--~e~~~~~~~~erQrv~i 120 (813)
...+++.|+.. . ...++.|+..+. . .+.+.....+||||++|
T Consensus 545 ~lr~~i~~v~Q~~~-l-f~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRial 622 (708)
T TIGR01193 545 TLRQFINYLPQEPY-I-FSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIAL 622 (708)
T ss_pred HHHHheEEEecCce-e-hhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHH
Confidence 11223333221 1 111222332211 0 11222233459999999
Q ss_pred HHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecC
Q 003528 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (813)
Q Consensus 121 A~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~ 197 (813)
|||+. ++|||||||++||+.+ .+.+.+.+.++ .++|+|+|||+++.+. .++++++ +++|++++.|+
T Consensus 623 ARall~~p~iliLDE~Ts~LD~~t------e~~i~~~L~~~---~~~T~IiitHr~~~~~-~~D~i~~-l~~G~i~~~G~ 691 (708)
T TIGR01193 623 ARALLTDSKVLILDESTSNLDTIT------EKKIVNNLLNL---QDKTIIFVAHRLSVAK-QSDKIIV-LDHGKIIEQGS 691 (708)
T ss_pred HHHHhhCCCEEEEeCccccCCHHH------HHHHHHHHHHh---cCCEEEEEecchHHHH-cCCEEEE-EECCEEEEECC
Confidence 99999 9999999999999999 99999999875 2789999999998765 3555544 45599999999
Q ss_pred cccccC
Q 003528 198 KPQAHM 203 (813)
Q Consensus 198 ~~e~~~ 203 (813)
..++.+
T Consensus 692 ~~~L~~ 697 (708)
T TIGR01193 692 HDELLD 697 (708)
T ss_pred HHHHHh
Confidence 887654
No 292
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.87 E-value=3.1e-22 Score=202.95 Aligned_cols=138 Identities=19% Similarity=0.185 Sum_probs=100.7
Q ss_pred cceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-----------------ccceeccccc
Q 003528 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT-----------------TKGIWMARCA 87 (813)
Q Consensus 25 ~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~-----------------~~g~~~~~~~ 87 (813)
+.+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+..- ..++.++...
T Consensus 5 ~~il~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 78 (190)
T TIGR01166 5 PEVLKGLNFAA--ERGEVLALLGANGAGKSTLLLHLNGLLR----PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPD 78 (190)
T ss_pred cceecceeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCceeEEECCEEccccccchHHHHhhEEEEecChh
Confidence 57999999999 5899999999999999999999999997 88887310 0122233221
Q ss_pred -CCCchhHHHHhhC-------CCccc--------------------cccchHHHHHHHHHHHHHHH---hHhhhccCCCC
Q 003528 88 -GIEPCTLIMDLEG-------TDGRE--------------------RGEDDTAFEKQSALFALAVS---DIVLINMWCHD 136 (813)
Q Consensus 88 -~~e~~~~vld~~g-------~~~~e--------------------~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsg 136 (813)
... ...+.++.. ....+ .......+|+||++||+|++ ++|||||||++
T Consensus 79 ~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 157 (190)
T TIGR01166 79 DQLF-AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAG 157 (190)
T ss_pred hccc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 011 112222221 11000 00011123999999999999 99999999999
Q ss_pred CCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCc
Q 003528 137 IGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 176 (813)
Q Consensus 137 LD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~ 176 (813)
||+.. .+.+.+++.++.++ |+|||++|||++++
T Consensus 158 LD~~~------~~~~~~~l~~~~~~-~~tili~sH~~~~~ 190 (190)
T TIGR01166 158 LDPAG------REQMLAILRRLRAE-GMTVVISTHDVDLA 190 (190)
T ss_pred CCHHH------HHHHHHHHHHHHHc-CCEEEEEeeccccC
Confidence 99999 99999999998764 89999999998753
No 293
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.87 E-value=8.6e-22 Score=234.50 Aligned_cols=169 Identities=17% Similarity=0.192 Sum_probs=125.4
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----ccceec
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----TKGIWM 83 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----~~g~~~ 83 (813)
.+|+++|+++.|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.. ..|++.
T Consensus 318 ~~l~~~~l~~~~~~---~~il~~vsl~i--~~Ge~~~l~G~NGsGKSTLlk~l~G~~~----p~~G~i~~~~~~~i~y~~ 388 (635)
T PRK11147 318 IVFEMENVNYQIDG---KQLVKDFSAQV--QRGDKIALIGPNGCGKTTLLKLMLGQLQ----ADSGRIHCGTKLEVAYFD 388 (635)
T ss_pred ceEEEeeeEEEECC---eEEEcCcEEEE--cCCCEEEEECCCCCcHHHHHHHHhCCCC----CCCcEEEECCCcEEEEEe
Confidence 47999999999976 67999999999 5899999999999999999999999997 89998532 123333
Q ss_pred ccccCCCchhHHHHhhCCC--c---c--c-------------------cccchHHHHHHHHHHHHHHH---hHhhhccCC
Q 003528 84 ARCAGIEPCTLIMDLEGTD--G---R--E-------------------RGEDDTAFEKQSALFALAVS---DIVLINMWC 134 (813)
Q Consensus 84 ~~~~~~e~~~~vld~~g~~--~---~--e-------------------~~~~~~~~erQrv~iA~ALa---dvLLLDEPt 134 (813)
+......+...+.+++... . . . .......+||||++||++++ ++|||||||
T Consensus 389 q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt 468 (635)
T PRK11147 389 QHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPT 468 (635)
T ss_pred CcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 3322222222333332110 0 0 0 00111224999999999999 999999999
Q ss_pred CCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEe
Q 003528 135 HDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (813)
Q Consensus 135 sgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~ 195 (813)
++||+.+ ...+.+++.++ +.|||+||||..++...+++++++.++|+|...
T Consensus 469 ~~LD~~~------~~~l~~~l~~~----~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~ 519 (635)
T PRK11147 469 NDLDVET------LELLEELLDSY----QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRY 519 (635)
T ss_pred CCCCHHH------HHHHHHHHHhC----CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEc
Confidence 9999999 88888888775 349999999999887667776666535887643
No 294
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.87 E-value=9e-22 Score=231.84 Aligned_cols=177 Identities=16% Similarity=0.121 Sum_probs=132.1
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------ 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------ 76 (813)
.|+++|++++|+++ .+.+|+++||++ .+|++++|+||||||||||+++|+|+.. |++|+..
T Consensus 338 ~i~~~~v~f~y~~~-~~~il~~i~~~i--~~G~~~aivG~sGsGKSTL~~ll~g~~~----p~~G~I~i~g~~i~~~~~~ 410 (574)
T PRK11160 338 SLTLNNVSFTYPDQ-PQPVLKGLSLQI--KAGEKVALLGRTGCGKSTLLQLLTRAWD----PQQGEILLNGQPIADYSEA 410 (574)
T ss_pred eEEEEEEEEECCCC-CCcceecceEEE--CCCCEEEEECCCCCCHHHHHHHHhcCCC----CCCceEEECCEEhhhCCHH
Confidence 59999999999652 246999999999 5899999999999999999999999997 8999831
Q ss_pred ---eccceecccccCCCchhHHHHhh-------------------CCCc------------cccccchHHHHHHHHHHHH
Q 003528 77 ---TTKGIWMARCAGIEPCTLIMDLE-------------------GTDG------------RERGEDDTAFEKQSALFAL 122 (813)
Q Consensus 77 ---~~~g~~~~~~~~~e~~~~vld~~-------------------g~~~------------~e~~~~~~~~erQrv~iA~ 122 (813)
...+...++... .+ ..+.++. +... .+.+.....+||||++|||
T Consensus 411 ~~r~~i~~v~Q~~~l-f~-~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialAR 488 (574)
T PRK11160 411 ALRQAISVVSQRVHL-FS-ATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIAR 488 (574)
T ss_pred HHHhheeEEcccchh-hc-ccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHH
Confidence 112222222211 00 1122222 2110 0122233446999999999
Q ss_pred HHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcc
Q 003528 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (813)
Q Consensus 123 ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~ 199 (813)
|+. ++||+||||++||+.+ .+.+.+.+.++. .++|+|+|+|+++.+.. +++++++ ++|++++.|+..
T Consensus 489 all~~~~ililDE~ts~lD~~t------~~~i~~~l~~~~--~~~tviiitHr~~~~~~-~d~i~~l-~~G~i~~~g~~~ 558 (574)
T PRK11160 489 ALLHDAPLLLLDEPTEGLDAET------ERQILELLAEHA--QNKTVLMITHRLTGLEQ-FDRICVM-DNGQIIEQGTHQ 558 (574)
T ss_pred HHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHc--CCCEEEEEecChhHHHh-CCEEEEE-eCCeEEEeCCHH
Confidence 999 9999999999999999 999999999885 37899999999987763 5555555 559999999987
Q ss_pred cccCC
Q 003528 200 QAHME 204 (813)
Q Consensus 200 e~~~~ 204 (813)
++.+.
T Consensus 559 ~l~~~ 563 (574)
T PRK11160 559 ELLAQ 563 (574)
T ss_pred HHHhc
Confidence 76543
No 295
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.87 E-value=8.2e-22 Score=232.73 Aligned_cols=174 Identities=19% Similarity=0.171 Sum_probs=129.1
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------ 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------ 76 (813)
.|+++|++++|++. ..+|+++||++ .+|++++|+|+||||||||+|+|+|+.. |++|...
T Consensus 334 ~I~~~~vsf~y~~~--~~iL~~inl~i--~~G~~v~IvG~sGsGKSTLl~lL~gl~~----p~~G~I~i~g~~i~~~~~~ 405 (588)
T PRK13657 334 AVEFDDVSFSYDNS--RQGVEDVSFEA--KPGQTVAIVGPTGAGKSTLINLLQRVFD----PQSGRILIDGTDIRTVTRA 405 (588)
T ss_pred eEEEEEEEEEeCCC--CceecceeEEE--CCCCEEEEECCCCCCHHHHHHHHhcCcC----CCCCEEEECCEEhhhCCHH
Confidence 59999999999752 56999999999 5899999999999999999999999997 8999831
Q ss_pred ---eccceecccccCCCchhHHHHhhCCC------------------------------c--cccccchHHHHHHHHHHH
Q 003528 77 ---TTKGIWMARCAGIEPCTLIMDLEGTD------------------------------G--RERGEDDTAFEKQSALFA 121 (813)
Q Consensus 77 ---~~~g~~~~~~~~~e~~~~vld~~g~~------------------------------~--~e~~~~~~~~erQrv~iA 121 (813)
...+++.+.. ... ..++.++..+. . .+.+.....+||||++||
T Consensus 406 ~~r~~i~~v~Q~~-~lf-~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialA 483 (588)
T PRK13657 406 SLRRNIAVVFQDA-GLF-NRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIA 483 (588)
T ss_pred HHHhheEEEecCc-ccc-cccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHH
Confidence 1122222222 110 01122222111 0 011222334599999999
Q ss_pred HHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCc
Q 003528 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (813)
Q Consensus 122 ~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~ 198 (813)
||+. +|+||||||++||+.+ .+.+++.+.++.+ ++|+|+|||++.... .+++++++ ++|++...|+.
T Consensus 484 Rall~~~~iliLDEpts~LD~~t------~~~i~~~l~~~~~--~~tvIiitHr~~~~~-~~D~ii~l-~~G~i~~~g~~ 553 (588)
T PRK13657 484 RALLKDPPILILDEATSALDVET------EAKVKAALDELMK--GRTTFIIAHRLSTVR-NADRILVF-DNGRVVESGSF 553 (588)
T ss_pred HHHhcCCCEEEEeCCccCCCHHH------HHHHHHHHHHHhc--CCEEEEEEecHHHHH-hCCEEEEE-ECCEEEEeCCH
Confidence 9999 9999999999999999 9999999988743 789999999998765 35555555 55999999987
Q ss_pred cccc
Q 003528 199 PQAH 202 (813)
Q Consensus 199 ~e~~ 202 (813)
.+..
T Consensus 554 ~~l~ 557 (588)
T PRK13657 554 DELV 557 (588)
T ss_pred HHHH
Confidence 6654
No 296
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.1e-21 Score=233.61 Aligned_cols=171 Identities=14% Similarity=0.099 Sum_probs=122.1
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccc---eeccc
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG---IWMAR 85 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g---~~~~~ 85 (813)
||+++|++++|++ +.+|+++||++ .+|++++|+||||||||||||+|+|+.. |++|++....+ .++.+
T Consensus 1 ~i~i~nls~~~g~---~~~l~~vs~~i--~~Ge~v~LvG~NGsGKSTLLkiL~G~~~----pd~G~I~~~~~~~i~~~~q 71 (638)
T PRK10636 1 MIVFSSLQIRRGV---RVLLDNATATI--NPGQKVGLVGKNGCGKSTLLALLKNEIS----ADGGSYTFPGNWQLAWVNQ 71 (638)
T ss_pred CEEEEEEEEEeCC---ceeecCcEEEE--CCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEecCCCEEEEEec
Confidence 5899999999976 67999999999 5899999999999999999999999987 88998432111 11111
Q ss_pred -ccCC--CchhHH------------------------------------------------HHhhCCCcc---ccccchH
Q 003528 86 -CAGI--EPCTLI------------------------------------------------MDLEGTDGR---ERGEDDT 111 (813)
Q Consensus 86 -~~~~--e~~~~v------------------------------------------------ld~~g~~~~---e~~~~~~ 111 (813)
.... ....++ ++..|+... .......
T Consensus 72 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 151 (638)
T PRK10636 72 ETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFS 151 (638)
T ss_pred CCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcC
Confidence 1000 000000 001111100 0011122
Q ss_pred HHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeec
Q 003528 112 AFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (813)
Q Consensus 112 ~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~ 188 (813)
.+|||||+||++|+ +||||||||++||+.+ ...+.+.+.++ +.|||+||||..++...+++++++.+
T Consensus 152 gGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~------~~~L~~~L~~~----~~tviivsHd~~~l~~~~d~i~~L~~ 221 (638)
T PRK10636 152 GGWRMRLNLAQALICRSDLLLLDEPTNHLDLDA------VIWLEKWLKSY----QGTLILISHDRDFLDPIVDKIIHIEQ 221 (638)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHH------HHHHHHHHHhC----CCeEEEEeCCHHHHHHhcCEEEEEeC
Confidence 34999999999999 9999999999999999 88888888775 46999999999988776666655554
Q ss_pred CCeEEE-ecCcc
Q 003528 189 IQKIWD-SVPKP 199 (813)
Q Consensus 189 ~GkI~~-~g~~~ 199 (813)
|++.. .|+..
T Consensus 222 -G~i~~~~g~~~ 232 (638)
T PRK10636 222 -QSLFEYTGNYS 232 (638)
T ss_pred -CEEEEecCCHH
Confidence 99864 45433
No 297
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.86 E-value=1e-21 Score=229.89 Aligned_cols=175 Identities=14% Similarity=0.095 Sum_probs=129.2
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------ 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------ 76 (813)
.|+++|++++|+++ .+.+|+++||++ .+|+.++|+||||||||||+++|+|+.. |++|+..
T Consensus 316 ~i~~~~v~~~y~~~-~~~~l~~~~~~i--~~G~~~~ivG~sGsGKSTL~~ll~g~~~----~~~G~i~~~g~~i~~~~~~ 388 (544)
T TIGR01842 316 HLSVENVTIVPPGG-KKPTLRGISFRL--QAGEALAIIGPSGSGKSTLARLIVGIWP----PTSGSVRLDGADLKQWDRE 388 (544)
T ss_pred eEEEEEEEEEcCCC-CccccccceEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCEehhhCCHH
Confidence 59999999999642 257999999999 5899999999999999999999999997 8999731
Q ss_pred ---eccceecccccCCCchhHHHHhhCC------------------------------C--ccccccchHHHHHHHHHHH
Q 003528 77 ---TTKGIWMARCAGIEPCTLIMDLEGT------------------------------D--GRERGEDDTAFEKQSALFA 121 (813)
Q Consensus 77 ---~~~g~~~~~~~~~e~~~~vld~~g~------------------------------~--~~e~~~~~~~~erQrv~iA 121 (813)
...+...+.. ...+ ..+.++... + -.+.+.....+||||++||
T Consensus 389 ~~~~~i~~v~q~~-~lf~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lA 466 (544)
T TIGR01842 389 TFGKHIGYLPQDV-ELFP-GTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALA 466 (544)
T ss_pred HHhhheEEecCCc-cccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHH
Confidence 0112222221 1111 112222211 0 0112222334599999999
Q ss_pred HHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCc
Q 003528 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (813)
Q Consensus 122 ~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~ 198 (813)
||+. ++||+||||++||+.+ .+.+.+.+.++.. .++|+|++||+++... .+++++++ ++|+++..|++
T Consensus 467 Rall~~~~ililDEpts~LD~~~------~~~i~~~l~~~~~-~~~tvi~ith~~~~~~-~~d~i~~l-~~G~i~~~g~~ 537 (544)
T TIGR01842 467 RALYGDPKLVVLDEPNSNLDEEG------EQALANAIKALKA-RGITVVVITHRPSLLG-CVDKILVL-QDGRIARFGER 537 (544)
T ss_pred HHHhcCCCEEEEeCCccccCHHH------HHHHHHHHHHHhh-CCCEEEEEeCCHHHHH-hCCEEEEE-ECCEEEeeCCH
Confidence 9999 9999999999999999 9999999998864 3789999999998654 35555555 55999999987
Q ss_pred ccc
Q 003528 199 PQA 201 (813)
Q Consensus 199 ~e~ 201 (813)
++.
T Consensus 538 ~~l 540 (544)
T TIGR01842 538 DEV 540 (544)
T ss_pred HHH
Confidence 654
No 298
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.86 E-value=6.8e-22 Score=238.19 Aligned_cols=176 Identities=13% Similarity=0.068 Sum_probs=127.4
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------ 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------ 76 (813)
.|+++|++++|++....++|+|+||++ .+|++++|+||||||||||+|+|+|+.. |++|++.
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i--~~Ge~vaIvG~SGsGKSTLl~lL~gl~~----p~~G~I~idg~~i~~~~~~ 551 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKGLTFTL--HPGEVVALVGPSGSGKSTVAALLQNLYQ----PTGGQVLLDGVPLVQYDHH 551 (711)
T ss_pred eEEEEEEEEECCCCCCCccccCceEEE--cCCCEEEEECCCCCCHHHHHHHHHhccC----CCCCEEEECCEEHHhcCHH
Confidence 599999999997522257999999999 5899999999999999999999999997 9999831
Q ss_pred ---eccceecccccCCCchhHHHHhh-------------------C-----------CCc--cccccchHHHHHHHHHHH
Q 003528 77 ---TTKGIWMARCAGIEPCTLIMDLE-------------------G-----------TDG--RERGEDDTAFEKQSALFA 121 (813)
Q Consensus 77 ---~~~g~~~~~~~~~e~~~~vld~~-------------------g-----------~~~--~e~~~~~~~~erQrv~iA 121 (813)
...+.+.|+... . ...+.||. + ++. .+.+.....+||||++||
T Consensus 552 ~lr~~i~~v~Q~~~l-F-~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalA 629 (711)
T TIGR00958 552 YLHRQVALVGQEPVL-F-SGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIA 629 (711)
T ss_pred HHHhhceEEecCccc-c-ccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHH
Confidence 112222222111 0 01112221 1 110 122233344699999999
Q ss_pred HHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCc
Q 003528 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (813)
Q Consensus 122 ~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~ 198 (813)
||+. +|+||||||++||++. .+.+.+ ... ..++|+|+|||+++.+.. +++++++ ++|+|++.|+.
T Consensus 630 RALl~~p~ILILDEpTSaLD~~t------e~~i~~-~~~---~~~~TvIiItHrl~~i~~-aD~IivL-~~G~ive~Gt~ 697 (711)
T TIGR00958 630 RALVRKPRVLILDEATSALDAEC------EQLLQE-SRS---RASRTVLLIAHRLSTVER-ADQILVL-KKGSVVEMGTH 697 (711)
T ss_pred HHHhcCCCEEEEEccccccCHHH------HHHHHH-hhc---cCCCeEEEEeccHHHHHh-CCEEEEE-ECCEEEEeeCH
Confidence 9999 9999999999999998 777877 222 247899999999987663 5555555 55999999998
Q ss_pred ccccCC
Q 003528 199 PQAHME 204 (813)
Q Consensus 199 ~e~~~~ 204 (813)
+++.+.
T Consensus 698 ~eL~~~ 703 (711)
T TIGR00958 698 KQLMED 703 (711)
T ss_pred HHHHhC
Confidence 887643
No 299
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.86 E-value=8.5e-22 Score=231.03 Aligned_cols=167 Identities=13% Similarity=0.164 Sum_probs=124.8
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----ccceec
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----TKGIWM 83 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----~~g~~~ 83 (813)
++|+++|+++.|++ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.. ..+++.
T Consensus 321 ~~l~~~~l~~~~~~---~~~l~~isl~i--~~Ge~~~l~G~NGsGKSTLl~~l~G~~~----p~~G~i~~~~~~~i~~v~ 391 (552)
T TIGR03719 321 KVIEAENLSKGFGD---KLLIDDLSFKL--PPGGIVGVIGPNGAGKSTLFRMITGQEQ----PDSGTIKIGETVKLAYVD 391 (552)
T ss_pred eEEEEeeEEEEECC---eeeeccceEEE--cCCCEEEEECCCCCCHHHHHHHHcCCCC----CCCeEEEECCceEEEEEe
Confidence 47999999999976 67999999999 5899999999999999999999999997 88998432 123444
Q ss_pred ccccCCCchhHHHHhh-----------------------CCCc---cccccchHHHHHHHHHHHHHHH---hHhhhccCC
Q 003528 84 ARCAGIEPCTLIMDLE-----------------------GTDG---RERGEDDTAFEKQSALFALAVS---DIVLINMWC 134 (813)
Q Consensus 84 ~~~~~~e~~~~vld~~-----------------------g~~~---~e~~~~~~~~erQrv~iA~ALa---dvLLLDEPt 134 (813)
+......+...+.++. |+.. .........+||||++||++++ ++|||||||
T Consensus 392 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt 471 (552)
T TIGR03719 392 QSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPT 471 (552)
T ss_pred CCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 4321122222222222 2210 0011122234999999999999 999999999
Q ss_pred CCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEE
Q 003528 135 HDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (813)
Q Consensus 135 sgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~ 193 (813)
++||+.. ...+.+.+.++. + |||+||||++.+...+++++++.+.|++.
T Consensus 472 ~~LD~~~------~~~l~~~l~~~~---~-~viivsHd~~~~~~~~d~i~~l~~~~~~~ 520 (552)
T TIGR03719 472 NDLDVET------LRALEEALLEFA---G-CAVVISHDRWFLDRIATHILAFEGDSHVE 520 (552)
T ss_pred CCCCHHH------HHHHHHHHHHCC---C-eEEEEeCCHHHHHHhCCEEEEEECCCeEE
Confidence 9999999 999999999872 4 89999999998877676666665435765
No 300
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.86 E-value=1.5e-21 Score=202.14 Aligned_cols=161 Identities=16% Similarity=0.146 Sum_probs=114.2
Q ss_pred EEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-------------
Q 003528 11 QLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------------- 77 (813)
Q Consensus 11 el~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~------------- 77 (813)
++.|+.+.|++. ..+++++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.-
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~~ 73 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRI--PTGQLTMIVGQVGCGKSSLLLAILGEMQ----TLEGKVHWSNKNESEPSFEAT 73 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhccCC----CCCCeEEECCccccccccccc
Confidence 688999999753 57999999999 5899999999999999999999999997 88887211
Q ss_pred ------ccceecccccCCCchhHHHHhhCCCc---c----------------------------ccccchHHHHHHHHHH
Q 003528 78 ------TKGIWMARCAGIEPCTLIMDLEGTDG---R----------------------------ERGEDDTAFEKQSALF 120 (813)
Q Consensus 78 ------~~g~~~~~~~~~e~~~~vld~~g~~~---~----------------------------e~~~~~~~~erQrv~i 120 (813)
..++.++..... + ..+.++..... . ........+|+||++|
T Consensus 74 ~~~~~~~i~~~~q~~~~~-~-~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~l 151 (218)
T cd03290 74 RSRNRYSVAYAAQKPWLL-N-ATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICV 151 (218)
T ss_pred chhhcceEEEEcCCCccc-c-ccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHH
Confidence 011222221111 1 12222221100 0 0011223359999999
Q ss_pred HHHHH---hHhhhccCCCCCCchhhcChhhHHHHHH--HHHHhhcCCCceEEEEeecCCCcccccCcceeeecCC
Q 003528 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQ--VMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (813)
Q Consensus 121 A~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~e--ll~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~G 190 (813)
|+|++ ++||+||||++||+.. ...+++ ++..+.+ .|.|+|++||+++.+. .+++.+ .+++|
T Consensus 152 aral~~~p~illlDEPt~~LD~~~------~~~l~~~~ll~~~~~-~~~tii~~sH~~~~~~-~~d~i~-~l~~G 217 (218)
T cd03290 152 ARALYQNTNIVFLDDPFSALDIHL------SDHLMQEGILKFLQD-DKRTLVLVTHKLQYLP-HADWII-AMKDG 217 (218)
T ss_pred HHHHhhCCCEEEEeCCccccCHHH------HHHHHHHHHHHHHhc-CCCEEEEEeCChHHHh-hCCEEE-EecCC
Confidence 99999 9999999999999999 888888 4555544 5899999999998875 455444 44435
No 301
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.86 E-value=7.6e-22 Score=231.61 Aligned_cols=167 Identities=14% Similarity=0.163 Sum_probs=124.8
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----ccceec
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----TKGIWM 83 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----~~g~~~ 83 (813)
++|++.|+++.|++ +.+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.. ..+++.
T Consensus 323 ~~l~~~~l~~~~~~---~~~l~~isl~i--~~Ge~~~l~G~NGsGKSTLl~~i~G~~~----p~~G~i~~~~~~~i~~v~ 393 (556)
T PRK11819 323 KVIEAENLSKSFGD---RLLIDDLSFSL--PPGGIVGIIGPNGAGKSTLFKMITGQEQ----PDSGTIKIGETVKLAYVD 393 (556)
T ss_pred eEEEEEeEEEEECC---eeeecceeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEECCceEEEEEe
Confidence 47999999999976 67999999999 5899999999999999999999999997 89998432 123444
Q ss_pred ccccCCCchhHHHHhh-----------------------CCCc---cccccchHHHHHHHHHHHHHHH---hHhhhccCC
Q 003528 84 ARCAGIEPCTLIMDLE-----------------------GTDG---RERGEDDTAFEKQSALFALAVS---DIVLINMWC 134 (813)
Q Consensus 84 ~~~~~~e~~~~vld~~-----------------------g~~~---~e~~~~~~~~erQrv~iA~ALa---dvLLLDEPt 134 (813)
+......+...+.++. |+.. .........+||||++||+|++ ++|||||||
T Consensus 394 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 473 (556)
T PRK11819 394 QSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPT 473 (556)
T ss_pred CchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 3321111112222222 2210 0011122334999999999999 999999999
Q ss_pred CCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEE
Q 003528 135 HDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (813)
Q Consensus 135 sgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~ 193 (813)
++||+.. ...+.+++.++. | |||+||||++.+...+++++++.+.|++.
T Consensus 474 ~~LD~~~------~~~l~~~l~~~~---~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~ 522 (556)
T PRK11819 474 NDLDVET------LRALEEALLEFP---G-CAVVISHDRWFLDRIATHILAFEGDSQVE 522 (556)
T ss_pred CCCCHHH------HHHHHHHHHhCC---C-eEEEEECCHHHHHHhCCEEEEEECCCeEE
Confidence 9999999 999999999872 4 89999999998877677666665446765
No 302
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.86 E-value=1.1e-21 Score=230.81 Aligned_cols=176 Identities=14% Similarity=0.064 Sum_probs=130.4
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------ 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------ 76 (813)
.|+++|++++|+.+ ...+|+++||++ .+|++++|+||||||||||+++|+|+.. |++|+..
T Consensus 313 ~I~~~~v~~~y~~~-~~~~l~~i~~~i--~~G~~~~ivG~sGsGKSTLl~ll~g~~~----p~~G~i~~~g~~~~~~~~~ 385 (569)
T PRK10789 313 ELDVNIRQFTYPQT-DHPALENVNFTL--KPGQMLGICGPTGSGKSTLLSLIQRHFD----VSEGDIRFHDIPLTKLQLD 385 (569)
T ss_pred cEEEEEEEEECCCC-CCccccCeeEEE--CCCCEEEEECCCCCCHHHHHHHHhcccC----CCCCEEEECCEEHhhCCHH
Confidence 48999999999752 257999999999 5899999999999999999999999997 8999831
Q ss_pred ---eccceecccccCCCchhHHHHhhCCCc--------------------------------cccccchHHHHHHHHHHH
Q 003528 77 ---TTKGIWMARCAGIEPCTLIMDLEGTDG--------------------------------RERGEDDTAFEKQSALFA 121 (813)
Q Consensus 77 ---~~~g~~~~~~~~~e~~~~vld~~g~~~--------------------------------~e~~~~~~~~erQrv~iA 121 (813)
...+...+.. ...+ .++.++..+.. .+.+.....+||||++||
T Consensus 386 ~~~~~i~~v~q~~-~lf~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lA 463 (569)
T PRK10789 386 SWRSRLAVVSQTP-FLFS-DTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIA 463 (569)
T ss_pred HHHhheEEEccCC-eecc-ccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHH
Confidence 0112222221 1100 11222221110 011222334599999999
Q ss_pred HHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCc
Q 003528 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (813)
Q Consensus 122 ~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~ 198 (813)
||++ +++||||||++||+.. .+.+++.++++. .++|+|+|||+++.... ++++++ .++|+++..|+.
T Consensus 464 Rall~~~~illlDEpts~LD~~~------~~~i~~~l~~~~--~~~tii~itH~~~~~~~-~d~i~~-l~~G~i~~~g~~ 533 (569)
T PRK10789 464 RALLLNAEILILDDALSAVDGRT------EHQILHNLRQWG--EGRTVIISAHRLSALTE-ASEILV-MQHGHIAQRGNH 533 (569)
T ss_pred HHHhcCCCEEEEECccccCCHHH------HHHHHHHHHHHh--CCCEEEEEecchhHHHc-CCEEEE-EeCCEEEEecCH
Confidence 9999 9999999999999999 999999999875 37899999999987763 555544 455999999988
Q ss_pred ccccC
Q 003528 199 PQAHM 203 (813)
Q Consensus 199 ~e~~~ 203 (813)
++..+
T Consensus 534 ~~l~~ 538 (569)
T PRK10789 534 DQLAQ 538 (569)
T ss_pred HHHHH
Confidence 77653
No 303
>PRK13409 putative ATPase RIL; Provisional
Probab=99.86 E-value=8e-22 Score=232.21 Aligned_cols=171 Identities=16% Similarity=0.045 Sum_probs=127.8
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee--ccceeccc
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT--TKGIWMAR 85 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~--~~g~~~~~ 85 (813)
++|++.|+++.|++ . .|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|+... ..++..+.
T Consensus 339 ~~l~~~~ls~~~~~---~-~l~~~s~~i--~~Geiv~l~G~NGsGKSTLlk~L~Gl~~----p~~G~I~~~~~i~y~~Q~ 408 (590)
T PRK13409 339 TLVEYPDLTKKLGD---F-SLEVEGGEI--YEGEVIGIVGPNGIGKTTFAKLLAGVLK----PDEGEVDPELKISYKPQY 408 (590)
T ss_pred eEEEEcceEEEECC---E-EEEecceEE--CCCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEEeeeEEEeccc
Confidence 47999999999965 3 489999999 5899999999999999999999999998 89998431 22333333
Q ss_pred ccCCCchhHHHHhhC--------------------CCc--cccccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCch
Q 003528 86 CAGIEPCTLIMDLEG--------------------TDG--RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGRE 140 (813)
Q Consensus 86 ~~~~e~~~~vld~~g--------------------~~~--~e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~ 140 (813)
. .......+.++.. +.. .........+|+|||+||+||+ ++|||||||++||+.
T Consensus 409 ~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~ 487 (590)
T PRK13409 409 I-KPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVE 487 (590)
T ss_pred c-cCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 2 2122222332221 100 0001112224999999999999 999999999999999
Q ss_pred hhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecC
Q 003528 141 QAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (813)
Q Consensus 141 ~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~ 197 (813)
+ +..+.++++++.++.|.|+|+||||++++...+++++ +++ |++...|.
T Consensus 488 ~------~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvi-vl~-~~~~~~g~ 536 (590)
T PRK13409 488 Q------RLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLM-VFE-GEPGKHGH 536 (590)
T ss_pred H------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EEc-Ccceeeee
Confidence 9 9999999999977668999999999998876666544 445 67776665
No 304
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.86 E-value=1e-21 Score=230.77 Aligned_cols=176 Identities=15% Similarity=0.077 Sum_probs=130.7
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------ 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------ 76 (813)
.|+++|++++|.+. ..++|+++||++ .+|++++|+|+||||||||+++|+|+.. |++|+..
T Consensus 330 ~i~~~~v~f~y~~~-~~~il~~inl~i--~~G~~v~IvG~sGsGKSTLl~lL~gl~~----~~~G~I~i~g~~i~~~~~~ 402 (571)
T TIGR02203 330 DVEFRNVTFRYPGR-DRPALDSISLVI--EPGETVALVGRSGSGKSTLVNLIPRFYE----PDSGQILLDGHDLADYTLA 402 (571)
T ss_pred eEEEEEEEEEcCCC-CCccccCeeEEe--cCCCEEEEECCCCCCHHHHHHHHHhccC----CCCCeEEECCEeHHhcCHH
Confidence 49999999999652 257999999999 5899999999999999999999999997 8999831
Q ss_pred ---eccceecccccCCCchhHHHHhh--------------------CC-----------Cc--cccccchHHHHHHHHHH
Q 003528 77 ---TTKGIWMARCAGIEPCTLIMDLE--------------------GT-----------DG--RERGEDDTAFEKQSALF 120 (813)
Q Consensus 77 ---~~~g~~~~~~~~~e~~~~vld~~--------------------g~-----------~~--~e~~~~~~~~erQrv~i 120 (813)
...+++.|+. ... ..++.++. |+ +. .+.+.....+||||++|
T Consensus 403 ~~~~~i~~v~Q~~-~lf-~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaL 480 (571)
T TIGR02203 403 SLRRQVALVSQDV-VLF-NDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAI 480 (571)
T ss_pred HHHhhceEEccCc-ccc-cccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHH
Confidence 1112222221 110 01111221 11 10 01222334569999999
Q ss_pred HHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecC
Q 003528 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (813)
Q Consensus 121 A~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~ 197 (813)
|||+. +|+||||||++||+.+ .+.+++.+.++.+ ++|+|+|||+..... .+++++.+ ++|++...|+
T Consensus 481 ARall~~~~illLDEpts~LD~~~------~~~i~~~L~~~~~--~~tiIiitH~~~~~~-~~D~ii~l-~~g~i~~~g~ 550 (571)
T TIGR02203 481 ARALLKDAPILILDEATSALDNES------ERLVQAALERLMQ--GRTTLVIAHRLSTIE-KADRIVVM-DDGRIVERGT 550 (571)
T ss_pred HHHHhcCCCEEEEeCccccCCHHH------HHHHHHHHHHHhC--CCEEEEEehhhHHHH-hCCEEEEE-eCCEEEeeCC
Confidence 99999 9999999999999999 9999999998853 689999999998765 35555555 4599999998
Q ss_pred cccccC
Q 003528 198 KPQAHM 203 (813)
Q Consensus 198 ~~e~~~ 203 (813)
..+..+
T Consensus 551 ~~~l~~ 556 (571)
T TIGR02203 551 HNELLA 556 (571)
T ss_pred HHHHHH
Confidence 877653
No 305
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.86 E-value=1.2e-21 Score=231.24 Aligned_cols=175 Identities=17% Similarity=0.114 Sum_probs=130.0
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------ 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------ 76 (813)
.|+++|++++|+++ ..+++++||++ .+|++++|+||||||||||+++|+|+.+ |++|+..
T Consensus 334 ~i~~~~v~~~y~~~--~~~l~~i~~~i--~~G~~~~ivG~sGsGKSTL~~ll~g~~~----~~~G~i~~~g~~~~~~~~~ 405 (585)
T TIGR01192 334 AVEFRHITFEFANS--SQGVFDVSFEA--KAGQTVAIVGPTGAGKTTLINLLQRVYD----PTVGQILIDGIDINTVTRE 405 (585)
T ss_pred eEEEEEEEEECCCC--CccccceeEEE--cCCCEEEEECCCCCCHHHHHHHHccCCC----CCCCEEEECCEEhhhCCHH
Confidence 49999999999752 46899999999 5899999999999999999999999997 8999731
Q ss_pred ---eccceecccccCCCchhHHHHhhCCCc--------------------------------cccccchHHHHHHHHHHH
Q 003528 77 ---TTKGIWMARCAGIEPCTLIMDLEGTDG--------------------------------RERGEDDTAFEKQSALFA 121 (813)
Q Consensus 77 ---~~~g~~~~~~~~~e~~~~vld~~g~~~--------------------------------~e~~~~~~~~erQrv~iA 121 (813)
...+...+.. ...+ ..+.++..... .+.+.....+||||++||
T Consensus 406 ~~~~~i~~v~q~~-~lf~-~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lA 483 (585)
T TIGR01192 406 SLRKSIATVFQDA-GLFN-RSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIA 483 (585)
T ss_pred HHHhheEEEccCC-ccCc-ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHH
Confidence 0112222221 1111 12222221110 111222334599999999
Q ss_pred HHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCc
Q 003528 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (813)
Q Consensus 122 ~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~ 198 (813)
||++ ++|||||||++||+.+ .+.+.+.+.++.+ +.|+|+|||+++.+.. +++++++ ++|+++..|+.
T Consensus 484 Rall~~p~ililDEpts~LD~~~------~~~i~~~l~~~~~--~~tvI~isH~~~~~~~-~d~i~~l-~~G~i~~~g~~ 553 (585)
T TIGR01192 484 RAILKNAPILVLDEATSALDVET------EARVKNAIDALRK--NRTTFIIAHRLSTVRN-ADLVLFL-DQGRLIEKGSF 553 (585)
T ss_pred HHHhcCCCEEEEECCccCCCHHH------HHHHHHHHHHHhC--CCEEEEEEcChHHHHc-CCEEEEE-ECCEEEEECCH
Confidence 9999 9999999999999999 9999999988743 7899999999988763 5555555 55999999987
Q ss_pred ccccC
Q 003528 199 PQAHM 203 (813)
Q Consensus 199 ~e~~~ 203 (813)
++..+
T Consensus 554 ~~l~~ 558 (585)
T TIGR01192 554 QELIQ 558 (585)
T ss_pred HHHHH
Confidence 76543
No 306
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.86 E-value=5.2e-22 Score=230.71 Aligned_cols=173 Identities=11% Similarity=0.129 Sum_probs=126.5
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---------- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---------- 77 (813)
++|+++|+++ .+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.-
T Consensus 267 ~~l~~~~l~~--------~~l~~isl~i--~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~----p~~G~i~~~g~~i~~~~~ 332 (510)
T PRK15439 267 PVLTVEDLTG--------EGFRNISLEV--RAGEILGLAGVVGAGRTELAETLYGLRP----ARGGRIMLNGKEINALST 332 (510)
T ss_pred ceEEEeCCCC--------CCccceeEEE--cCCcEEEEECCCCCCHHHHHHHHcCCCC----CCCcEEEECCEECCCCCH
Confidence 3689999973 1589999999 5899999999999999999999999997 88898421
Q ss_pred ------ccceecccc--cCCCchhHHHHhh----------------------------CCC-c--cccccchHHHHHHHH
Q 003528 78 ------TKGIWMARC--AGIEPCTLIMDLE----------------------------GTD-G--RERGEDDTAFEKQSA 118 (813)
Q Consensus 78 ------~~g~~~~~~--~~~e~~~~vld~~----------------------------g~~-~--~e~~~~~~~~erQrv 118 (813)
..+++.+.. ....+...+.++. |+. . .........+||||+
T Consensus 333 ~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 333 AQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred HHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHH
Confidence 011222221 0111111111111 111 0 000111223499999
Q ss_pred HHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEe
Q 003528 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (813)
Q Consensus 119 ~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~ 195 (813)
+||+|++ ++|||||||+|||+.. ...+.+++.++.++ |.|||+||||++++...+++++++.+ |+|+..
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~------~~~l~~~l~~l~~~-g~tiIivsHd~~~i~~~~d~i~~l~~-G~i~~~ 484 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSA------RNDIYQLIRSIAAQ-NVAVLFISSDLEEIEQMADRVLVMHQ-GEISGA 484 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhH------HHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEEC-CEEEEE
Confidence 9999999 9999999999999999 99999999999875 89999999999988876766666655 999998
Q ss_pred cCccccc
Q 003528 196 VPKPQAH 202 (813)
Q Consensus 196 g~~~e~~ 202 (813)
++++++.
T Consensus 485 ~~~~~~~ 491 (510)
T PRK15439 485 LTGAAIN 491 (510)
T ss_pred EccccCC
Confidence 8876654
No 307
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.86 E-value=6.1e-22 Score=209.59 Aligned_cols=154 Identities=19% Similarity=0.154 Sum_probs=107.5
Q ss_pred cceeeecceeeec---cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeec--cceecccccCCCchhHHHHhh
Q 003528 25 EHFIKEVKLSDCG---LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT--KGIWMARCAGIEPCTLIMDLE 99 (813)
Q Consensus 25 ~~vL~~vsl~i~~---~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~--~g~~~~~~~~~e~~~~vld~~ 99 (813)
...+++++|.+.. .+|++++|+|||||||||||++|+|+.+ |++|++.-. .-.+.++.........+.++.
T Consensus 7 ~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~----p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l 82 (246)
T cd03237 7 KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK----PDEGDIEIELDTVSYKPQYIKADYEGTVRDLL 82 (246)
T ss_pred ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc----CCCCeEEECCceEEEecccccCCCCCCHHHHH
Confidence 3466667776631 2699999999999999999999999997 899984211 111222221111112222221
Q ss_pred ---------------------CCCcc--ccccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHH
Q 003528 100 ---------------------GTDGR--ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQ 153 (813)
Q Consensus 100 ---------------------g~~~~--e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~e 153 (813)
|+... ........+|+||++||+||+ +++||||||++||+.. +..+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~------~~~l~~ 156 (246)
T cd03237 83 SSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQ------RLMASK 156 (246)
T ss_pred HHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHH
Confidence 11100 001111224999999999999 9999999999999999 999999
Q ss_pred HHHHhhcCCCceEEEEeecCCCcccccCcceeeec
Q 003528 154 VMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (813)
Q Consensus 154 ll~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~ 188 (813)
+++++.++.|+|||+||||++.+...+++++++.+
T Consensus 157 ~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~ 191 (246)
T cd03237 157 VIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEG 191 (246)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 99999765689999999999988766666655533
No 308
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.86 E-value=1.3e-21 Score=235.16 Aligned_cols=176 Identities=15% Similarity=0.128 Sum_probs=132.1
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------ 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------ 76 (813)
.|+++|++++|+++ .+.+|+++||++ .+|+.++|+|+||||||||+|+|+|+.. |++|+..
T Consensus 455 ~i~~~~vsf~y~~~-~~~il~~i~l~i--~~G~~vaivG~sGsGKSTL~~ll~g~~~----p~~G~I~idg~~i~~~~~~ 527 (694)
T TIGR01846 455 AITFENIRFRYAPD-SPEVLSNLNLDI--KPGEFIGIVGPSGSGKSTLTKLLQRLYT----PQHGQVLVDGVDLAIADPA 527 (694)
T ss_pred eEEEEEEEEEcCCC-CccccccceEEE--CCCCEEEEECCCCCCHHHHHHHHhcCCC----CCCceEEECCEehhhCCHH
Confidence 59999999999652 256999999999 5899999999999999999999999997 8999831
Q ss_pred ---eccceecccccCCCchhHHHHhhCCCc--------------------------------cccccchHHHHHHHHHHH
Q 003528 77 ---TTKGIWMARCAGIEPCTLIMDLEGTDG--------------------------------RERGEDDTAFEKQSALFA 121 (813)
Q Consensus 77 ---~~~g~~~~~~~~~e~~~~vld~~g~~~--------------------------------~e~~~~~~~~erQrv~iA 121 (813)
...+.+.++... . ..++.++..+.. .+.+.....+||||+++|
T Consensus 528 ~~r~~i~~v~q~~~l-f-~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lA 605 (694)
T TIGR01846 528 WLRRQMGVVLQENVL-F-SRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIA 605 (694)
T ss_pred HHHHhCeEEccCCee-h-hhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHH
Confidence 112222222211 0 112222222110 112223334599999999
Q ss_pred HHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCc
Q 003528 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (813)
Q Consensus 122 ~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~ 198 (813)
||++ ++|||||||++||+.+ .+.+.+.+.++. .++|+|+|||+++.+.. ++++++ +++|+|++.|+.
T Consensus 606 Rall~~~~ililDEpts~LD~~~------~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~ii~-l~~G~i~~~g~~ 675 (694)
T TIGR01846 606 RALVGNPRILIFDEATSALDYES------EALIMRNMREIC--RGRTVIIIAHRLSTVRA-CDRIIV-LEKGQIAESGRH 675 (694)
T ss_pred HHHHhCCCEEEEECCCcCCCHHH------HHHHHHHHHHHh--CCCEEEEEeCChHHHHh-CCEEEE-EeCCEEEEeCCH
Confidence 9999 9999999999999999 999999999985 37899999999988763 555554 455999999998
Q ss_pred ccccC
Q 003528 199 PQAHM 203 (813)
Q Consensus 199 ~e~~~ 203 (813)
+++.+
T Consensus 676 ~~l~~ 680 (694)
T TIGR01846 676 EELLA 680 (694)
T ss_pred HHHHH
Confidence 77654
No 309
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.6e-21 Score=218.72 Aligned_cols=174 Identities=18% Similarity=0.183 Sum_probs=133.1
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCee-------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS------------- 75 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~------------- 75 (813)
.|++.|++++|+++ +++|+++||++ ++|+.|||+|+|||||||+||+|++... .+|++
T Consensus 351 ~I~F~dV~f~y~~k--~~iL~gvsf~I--~kGekVaIvG~nGsGKSTilr~LlrF~d-----~sG~I~IdG~dik~~~~~ 421 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPK--RKVLKGVSFTI--PKGEKVAIVGSNGSGKSTILRLLLRFFD-----YSGSILIDGQDIKEVSLE 421 (591)
T ss_pred cEEEEeeEEEeCCC--CceecceeEEe--cCCCEEEEECCCCCCHHHHHHHHHHHhc-----cCCcEEECCeeHhhhChH
Confidence 59999999999883 56999999999 6899999999999999999999999973 77882
Q ss_pred --eeccceecccccCCCchhHHHHhhCCCc--------------------------------cccccchHHHHHHHHHHH
Q 003528 76 --QTTKGIWMARCAGIEPCTLIMDLEGTDG--------------------------------RERGEDDTAFEKQSALFA 121 (813)
Q Consensus 76 --q~~~g~~~~~~~~~e~~~~vld~~g~~~--------------------------------~e~~~~~~~~erQrv~iA 121 (813)
+...|.+.|.... .+ -+++.+...+. .+++.....+|||||+||
T Consensus 422 SlR~~Ig~VPQd~~L-Fn-dTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvsla 499 (591)
T KOG0057|consen 422 SLRQSIGVVPQDSVL-FN-DTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLA 499 (591)
T ss_pred HhhhheeEeCCcccc-cc-hhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHH
Confidence 1223444443322 11 11222221110 123333334499999999
Q ss_pred HHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCc
Q 003528 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (813)
Q Consensus 122 ~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~ 198 (813)
||+. +|+++||||++||.++ -..+++.+++.. .++|+|+|-|+++.+. .+|.++..++|++...|+.
T Consensus 500 Ra~lKda~Il~~DEaTS~LD~~T------E~~i~~~i~~~~--~~rTvI~IvH~l~ll~--~~DkI~~l~nG~v~e~gth 569 (591)
T KOG0057|consen 500 RAFLKDAPILLLDEATSALDSET------EREILDMIMDVM--SGRTVIMIVHRLDLLK--DFDKIIVLDNGTVKEYGTH 569 (591)
T ss_pred HHHhcCCCeEEecCcccccchhh------HHHHHHHHHHhc--CCCeEEEEEecchhHh--cCCEEEEEECCeeEEeccH
Confidence 9999 9999999999999999 999999999943 4899999999999988 3455555566999999998
Q ss_pred ccccC
Q 003528 199 PQAHM 203 (813)
Q Consensus 199 ~e~~~ 203 (813)
.+.+.
T Consensus 570 ~ell~ 574 (591)
T KOG0057|consen 570 SELLA 574 (591)
T ss_pred HHHhh
Confidence 88765
No 310
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.86 E-value=2.4e-21 Score=231.00 Aligned_cols=180 Identities=17% Similarity=0.154 Sum_probs=131.8
Q ss_pred CccEEEEeeeEEeccc-cccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee---------
Q 003528 7 CCSTQLIDGDGTFNVS-GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ--------- 76 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~-~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q--------- 76 (813)
+++|+++|++++|+.. +...+|+++||++ .+|++++|+||||||||||+++|+|+.+ |++|+..
T Consensus 2 ~~~l~~~nl~~~y~~~~~~~~il~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~----~~~G~i~~~g~~i~~~ 75 (648)
T PRK10535 2 TALLELKDIRRSYPSGEEQVEVLKGISLDI--YAGEMVAIVGASGSGKSTLMNILGCLDK----PTSGTYRVAGQDVATL 75 (648)
T ss_pred CcEEEEeeEEEEeCCCCCCeeeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCCC----CCCeEEEECCEEcCcC
Confidence 3579999999999631 1146999999999 5899999999999999999999999997 8889721
Q ss_pred ----------eccceecccccCCCchhHHHHhh-------CCCcccccc--------------------chHHHHHHHHH
Q 003528 77 ----------TTKGIWMARCAGIEPCTLIMDLE-------GTDGRERGE--------------------DDTAFEKQSAL 119 (813)
Q Consensus 77 ----------~~~g~~~~~~~~~e~~~~vld~~-------g~~~~e~~~--------------------~~~~~erQrv~ 119 (813)
...++.++.. ...+...+.++. +....+..+ ....+|+||++
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~-~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~ 154 (648)
T PRK10535 76 DADALAQLRREHFGFIFQRY-HLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVS 154 (648)
T ss_pred CHHHHHHHHhccEEEEeCCc-ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHH
Confidence 0112333322 211111222211 221111100 11123999999
Q ss_pred HHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEec
Q 003528 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (813)
Q Consensus 120 iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g 196 (813)
||+|++ ++||+||||++||+.. .+.+.+++.++.++ |.|+|++||+++.+. .+++.+++ ++|++...|
T Consensus 155 LAraL~~~P~lLllDEP~~gLD~~s------~~~l~~ll~~l~~~-g~tilivsH~~~~~~-~~d~i~~l-~~G~i~~~g 225 (648)
T PRK10535 155 IARALMNGGQVILADEPTGALDSHS------GEEVMAILHQLRDR-GHTVIIVTHDPQVAA-QAERVIEI-RDGEIVRNP 225 (648)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhc-CCEEEEECCCHHHHH-hCCEEEEE-ECCEEEeec
Confidence 999999 9999999999999999 99999999998754 899999999998775 45555555 559999999
Q ss_pred Cccccc
Q 003528 197 PKPQAH 202 (813)
Q Consensus 197 ~~~e~~ 202 (813)
+.++..
T Consensus 226 ~~~~~~ 231 (648)
T PRK10535 226 PAQEKV 231 (648)
T ss_pred Cccccc
Confidence 887654
No 311
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.86 E-value=1.3e-21 Score=230.24 Aligned_cols=179 Identities=16% Similarity=0.132 Sum_probs=130.3
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------ 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------ 76 (813)
.|+++|++++|+....+.+|+++||++ .+|+.++|+|+||||||||+++|+|+.. |.+|+..
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i--~~Ge~i~IvG~sGsGKSTLlklL~gl~~----p~~G~I~i~g~~i~~~~~~ 410 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTV--RPGETVALVGPSGAGKSTLFQLLLRFYD----PQSGRILLDGVDLRQLDPA 410 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEe--cCCCEEEEECCCCCCHHHHHHHHHhccC----CCCCEEEECCEEHHhcCHH
Confidence 499999999997521256999999999 5899999999999999999999999997 8999831
Q ss_pred ---eccceecccccC-----CCchhH------------HHHhhCC-----------Cc--cccccchHHHHHHHHHHHHH
Q 003528 77 ---TTKGIWMARCAG-----IEPCTL------------IMDLEGT-----------DG--RERGEDDTAFEKQSALFALA 123 (813)
Q Consensus 77 ---~~~g~~~~~~~~-----~e~~~~------------vld~~g~-----------~~--~e~~~~~~~~erQrv~iA~A 123 (813)
...++..++... .+|+.+ .++..|+ +. .+.+.....+||||++||||
T Consensus 411 ~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRa 490 (576)
T TIGR02204 411 ELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARA 490 (576)
T ss_pred HHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHH
Confidence 112222222211 111111 1111111 10 01222334469999999999
Q ss_pred HH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccc
Q 003528 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (813)
Q Consensus 124 La---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e 200 (813)
+. +++|+||||++||+.+ .+.+++.++++.+ ++|+|+|||+++... .++ +++..++|++++.|+.++
T Consensus 491 l~~~~~ililDEpts~lD~~~------~~~i~~~l~~~~~--~~t~IiitH~~~~~~-~~d-~vi~l~~g~~~~~g~~~~ 560 (576)
T TIGR02204 491 ILKDAPILLLDEATSALDAES------EQLVQQALETLMK--GRTTLIIAHRLATVL-KAD-RIVVMDQGRIVAQGTHAE 560 (576)
T ss_pred HHhCCCeEEEeCcccccCHHH------HHHHHHHHHHHhC--CCEEEEEecchHHHH-hCC-EEEEEECCEEEeeecHHH
Confidence 99 9999999999999999 9999999999853 789999999998776 344 445555599999998776
Q ss_pred ccC
Q 003528 201 AHM 203 (813)
Q Consensus 201 ~~~ 203 (813)
..+
T Consensus 561 l~~ 563 (576)
T TIGR02204 561 LIA 563 (576)
T ss_pred HHH
Confidence 543
No 312
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.86 E-value=6.9e-22 Score=229.17 Aligned_cols=172 Identities=10% Similarity=0.092 Sum_probs=126.0
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---------- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---------- 77 (813)
++|++.|+++ .+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.-
T Consensus 256 ~~l~~~~l~~--------~~l~~vsl~i--~~Ge~~~liG~NGsGKSTLl~~l~G~~~----p~~G~I~~~g~~i~~~~~ 321 (501)
T PRK10762 256 VRLKVDNLSG--------PGVNDVSFTL--RKGEILGVSGLMGAGRTELMKVLYGALP----RTSGYVTLDGHEVVTRSP 321 (501)
T ss_pred cEEEEeCccc--------CCcccceEEE--cCCcEEEEecCCCCCHHHHHHHHhCCCC----CCceEEEECCEECCCCCH
Confidence 3688888873 2699999999 5899999999999999999999999997 88888321
Q ss_pred ------ccceeccccc--CCCchhHHHHhh-------------------------------CCC-c--cccccchHHHHH
Q 003528 78 ------TKGIWMARCA--GIEPCTLIMDLE-------------------------------GTD-G--RERGEDDTAFEK 115 (813)
Q Consensus 78 ------~~g~~~~~~~--~~e~~~~vld~~-------------------------------g~~-~--~e~~~~~~~~er 115 (813)
..+++.+... ...+...+.++. |+. . .........+||
T Consensus 322 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGek 401 (501)
T PRK10762 322 QDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQ 401 (501)
T ss_pred HHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHH
Confidence 1223333310 111111222211 110 0 000111223499
Q ss_pred HHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeE
Q 003528 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (813)
Q Consensus 116 Qrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI 192 (813)
||++||+|++ ++|||||||++||+.. ...+.+++.++.++ |.|||++|||++.+...+++++++.+ |+|
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-g~tviivtHd~~~~~~~~d~v~~l~~-G~i 473 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGA------KKEIYQLINQFKAE-GLSIILVSSEMPEVLGMSDRILVMHE-GRI 473 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhH------HHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhhCCEEEEEEC-CEE
Confidence 9999999999 9999999999999999 99999999999765 89999999999988766666665555 999
Q ss_pred EEecCcccc
Q 003528 193 WDSVPKPQA 201 (813)
Q Consensus 193 ~~~g~~~e~ 201 (813)
+..+++.++
T Consensus 474 ~~~~~~~~~ 482 (501)
T PRK10762 474 SGEFTREQA 482 (501)
T ss_pred EEEeccccC
Confidence 988877654
No 313
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=6e-22 Score=228.88 Aligned_cols=181 Identities=17% Similarity=0.180 Sum_probs=134.6
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee-------eccce
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ-------TTKGI 81 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q-------~~~g~ 81 (813)
.|+++|+++.|+.....++|+|+||++ .+|++|||+||||+||||+.++|-.+.. |++|++. .....
T Consensus 465 ~IeF~~VsFaYP~Rp~~~Vlk~lsfti--~pGe~vALVGPSGsGKSTiasLL~rfY~----PtsG~IllDG~~i~~~~~~ 538 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRPDVPVLKNLSFTI--RPGEVVALVGPSGSGKSTIASLLLRFYD----PTSGRILLDGVPISDINHK 538 (716)
T ss_pred eEEEEEeeeecCCCCCchhhcCceeee--CCCCEEEEECCCCCCHHHHHHHHHHhcC----CCCCeEEECCeehhhcCHH
Confidence 599999999998655578999999999 5899999999999999999999999996 9999931 11111
Q ss_pred ecccccC---CCchh---HHHHhhCCCc--------------------------------cccccchHHHHHHHHHHHHH
Q 003528 82 WMARCAG---IEPCT---LIMDLEGTDG--------------------------------RERGEDDTAFEKQSALFALA 123 (813)
Q Consensus 82 ~~~~~~~---~e~~~---~vld~~g~~~--------------------------------~e~~~~~~~~erQrv~iA~A 123 (813)
|+.+..+ .|+.+ .+.+|+.... .|++.....+||||++||||
T Consensus 539 ~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARA 618 (716)
T KOG0058|consen 539 YLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARA 618 (716)
T ss_pred HHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHH
Confidence 1111111 11211 1233322111 11222222339999999999
Q ss_pred HH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccc
Q 003528 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (813)
Q Consensus 124 La---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e 200 (813)
|. .||||||.|++||.++ ...|-+.+.++.+ +.|+|+|.|.+..+. ..+.+++.+.|++++.|+..+
T Consensus 619 Llr~P~VLILDEATSALDaeS------E~lVq~aL~~~~~--~rTVlvIAHRLSTV~--~Ad~Ivvi~~G~V~E~G~h~e 688 (716)
T KOG0058|consen 619 LLRNPRVLILDEATSALDAES------EYLVQEALDRLMQ--GRTVLVIAHRLSTVR--HADQIVVIDKGRVVEMGTHDE 688 (716)
T ss_pred HhcCCCEEEEechhhhcchhh------HHHHHHHHHHhhc--CCeEEEEehhhhHhh--hccEEEEEcCCeEEecccHHH
Confidence 99 9999999999999999 8888899988765 589999999999887 345555556699999998888
Q ss_pred ccCCc
Q 003528 201 AHMET 205 (813)
Q Consensus 201 ~~~~~ 205 (813)
.++..
T Consensus 689 Ll~~~ 693 (716)
T KOG0058|consen 689 LLSKP 693 (716)
T ss_pred HhhCc
Confidence 76543
No 314
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.86 E-value=7.4e-22 Score=228.94 Aligned_cols=172 Identities=17% Similarity=0.190 Sum_probs=125.9
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeec----------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT---------- 78 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~---------- 78 (813)
.++++|++. ..+++++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.-.
T Consensus 257 ~l~~~~~~~-------~~~l~~isl~i--~~Ge~~~iiG~NGsGKSTLlk~l~G~~~----p~~G~i~~~g~~~~~~~~~ 323 (501)
T PRK11288 257 RLRLDGLKG-------PGLREPISFSV--RAGEIVGLFGLVGAGRSELMKLLYGATR----RTAGQVYLDGKPIDIRSPR 323 (501)
T ss_pred EEEEecccc-------CCcccceeEEE--eCCcEEEEEcCCCCCHHHHHHHHcCCCc----CCCceEEECCEECCCCCHH
Confidence 578888862 24899999999 5899999999999999999999999997 888883210
Q ss_pred ------cceeccccc--CCCchhHHHHhh-------------------------------CCCc---cccccchHHHHHH
Q 003528 79 ------KGIWMARCA--GIEPCTLIMDLE-------------------------------GTDG---RERGEDDTAFEKQ 116 (813)
Q Consensus 79 ------~g~~~~~~~--~~e~~~~vld~~-------------------------------g~~~---~e~~~~~~~~erQ 116 (813)
.+++.+... ...+...+.++. |+.. .........+|||
T Consensus 324 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q 403 (501)
T PRK11288 324 DAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQ 403 (501)
T ss_pred HHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHH
Confidence 112222210 111112222322 1100 0001111224999
Q ss_pred HHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEE
Q 003528 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (813)
Q Consensus 117 rv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~ 193 (813)
|++||+|++ ++|||||||+|||+.. ...+++++.++.+. |.|||+||||++++...+++++++.+ |+++
T Consensus 404 rl~la~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tviivsHd~~~~~~~~d~i~~l~~-g~i~ 475 (501)
T PRK11288 404 KAILGRWLSEDMKVILLDEPTRGIDVGA------KHEIYNVIYELAAQ-GVAVLFVSSDLPEVLGVADRIVVMRE-GRIA 475 (501)
T ss_pred HHHHHHHHccCCCEEEEcCCCCCCCHhH------HHHHHHHHHHHHhC-CCEEEEECCCHHHHHhhCCEEEEEEC-CEEE
Confidence 999999999 9999999999999999 99999999999765 89999999999988876776666655 9999
Q ss_pred EecCcccc
Q 003528 194 DSVPKPQA 201 (813)
Q Consensus 194 ~~g~~~e~ 201 (813)
..|++++.
T Consensus 476 ~~~~~~~~ 483 (501)
T PRK11288 476 GELAREQA 483 (501)
T ss_pred EEEccccC
Confidence 99887653
No 315
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.2e-21 Score=192.77 Aligned_cols=151 Identities=19% Similarity=0.220 Sum_probs=115.2
Q ss_pred EEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccccCCCc
Q 003528 12 LIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEP 91 (813)
Q Consensus 12 l~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~~~~e~ 91 (813)
++|+++.|.+ ..+++++||++ .+|++++|+|+||||||||+++|+|+.+ |..|+.. ..+.-.... .
T Consensus 2 ~~~~~~~~~~---~~~l~~~~~~i--~~g~~~~i~G~nGsGKStll~~l~g~~~----~~~G~i~-~~~~~~~~~----~ 67 (157)
T cd00267 2 IENLSFRYGG---RTALDNVSLTL--KAGEIVALVGPNGSGKSTLLRAIAGLLK----PTSGEIL-IDGKDIAKL----P 67 (157)
T ss_pred eEEEEEEeCC---eeeEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCccEEE-ECCEEcccC----C
Confidence 6789999976 57999999999 5899999999999999999999999997 8888742 112111100 0
Q ss_pred hhHHHHhhCCCccccccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEE
Q 003528 92 CTLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMF 168 (813)
Q Consensus 92 ~~~vld~~g~~~~e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~ 168 (813)
..-.....+.-. ....+|+||++||++++ +++|+||||++||+.+ ...+.+.+.++.+. +.|+|+
T Consensus 68 ~~~~~~~i~~~~-----qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~------~~~l~~~l~~~~~~-~~tii~ 135 (157)
T cd00267 68 LEELRRRIGYVP-----QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPAS------RERLLELLRELAEE-GRTVII 135 (157)
T ss_pred HHHHHhceEEEe-----eCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH------HHHHHHHHHHHHHC-CCEEEE
Confidence 000000011100 04567999999999999 9999999999999999 99999999998765 789999
Q ss_pred EeecCCCcccccCcceeeec
Q 003528 169 VIRDKTRTPLENLEPVLRED 188 (813)
Q Consensus 169 VtHD~~~~~~~~~~~vll~~ 188 (813)
+||+++.+...+++.+++.+
T Consensus 136 ~sh~~~~~~~~~d~i~~l~~ 155 (157)
T cd00267 136 VTHDPELAELAADRVIVLKD 155 (157)
T ss_pred EeCCHHHHHHhCCEEEEEeC
Confidence 99999988865566555544
No 316
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.86 E-value=7.9e-22 Score=228.12 Aligned_cols=173 Identities=10% Similarity=0.086 Sum_probs=125.7
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----c-----
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----T----- 78 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----~----- 78 (813)
++|+++|+++.+ ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.- .
T Consensus 249 ~~i~~~~l~~~~-----~~~l~~vsl~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~i~~~~~ 317 (491)
T PRK10982 249 VILEVRNLTSLR-----QPSIRDVSFDL--HKGEILGIAGLVGAKRTDIVETLFGIRE----KSAGTITLHGKKINNHNA 317 (491)
T ss_pred cEEEEeCccccc-----CcccceeeEEE--eCCcEEEEecCCCCCHHHHHHHHcCCCc----CCccEEEECCEECCCCCH
Confidence 479999999874 35899999999 5899999999999999999999999997 88898321 0
Q ss_pred -------cceeccccc--CCCchhH-----HHHhh-------CC-Ccc---------------------ccccchHHHHH
Q 003528 79 -------KGIWMARCA--GIEPCTL-----IMDLE-------GT-DGR---------------------ERGEDDTAFEK 115 (813)
Q Consensus 79 -------~g~~~~~~~--~~e~~~~-----vld~~-------g~-~~~---------------------e~~~~~~~~er 115 (813)
.+++.+... +..+... +.+.. +. ... ........+||
T Consensus 318 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~ 397 (491)
T PRK10982 318 NEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQ 397 (491)
T ss_pred HHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHH
Confidence 111212110 0001000 11100 10 000 00111122499
Q ss_pred HHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeE
Q 003528 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (813)
Q Consensus 116 Qrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI 192 (813)
||++||++++ +||||||||+|||+.. ...+++++.++.++ |.|||+||||++++...+++++++.+ |++
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~------~~~~~~~l~~l~~~-~~tvi~vsHd~~~~~~~~d~v~~l~~-g~i 469 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGA------KFEIYQLIAELAKK-DKGIIIISSEMPELLGITDRILVMSN-GLV 469 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhH------HHHHHHHHHHHHHC-CCEEEEECCChHHHHhhCCEEEEEEC-CEE
Confidence 9999999999 9999999999999999 99999999998765 89999999999988776666666655 999
Q ss_pred EEecCcc
Q 003528 193 WDSVPKP 199 (813)
Q Consensus 193 ~~~g~~~ 199 (813)
+..++.+
T Consensus 470 ~~~~~~~ 476 (491)
T PRK10982 470 AGIVDTK 476 (491)
T ss_pred EEEEccc
Confidence 9777654
No 317
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.86 E-value=1.6e-21 Score=229.42 Aligned_cols=176 Identities=17% Similarity=0.148 Sum_probs=134.0
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------ 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------ 76 (813)
.|+++|+++.|+++ +++|+++||.+ .+|+.+||+||+|||||||+|+|+|+.. |.+|++.
T Consensus 328 ~I~f~~vsf~y~~~--~~vl~~is~~i--~~Ge~vaiVG~sGsGKSTl~~LL~r~~~----~~~G~I~idg~dI~~i~~~ 399 (567)
T COG1132 328 SIEFENVSFSYPGK--KPVLKDISFSI--EPGEKVAIVGPSGSGKSTLIKLLLRLYD----PTSGEILIDGIDIRDISLD 399 (567)
T ss_pred eEEEEEEEEEcCCC--CccccCceEEE--cCCCEEEEECCCCCCHHHHHHHHhccCC----CCCCeEEECCEehhhcCHH
Confidence 49999999999852 78999999999 5899999999999999999999999997 8899832
Q ss_pred ---eccceecccccCCCchhHHHHhhCCCc--------------------------------cccccchHHHHHHHHHHH
Q 003528 77 ---TTKGIWMARCAGIEPCTLIMDLEGTDG--------------------------------RERGEDDTAFEKQSALFA 121 (813)
Q Consensus 77 ---~~~g~~~~~~~~~e~~~~vld~~g~~~--------------------------------~e~~~~~~~~erQrv~iA 121 (813)
...+.+.|.. ...+ .++.+|..... .+++.....+||||++||
T Consensus 400 ~lr~~I~~V~Qd~-~LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiA 477 (567)
T COG1132 400 SLRKRIGIVSQDP-LLFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIA 477 (567)
T ss_pred HHHHhccEEcccc-eeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHH
Confidence 1222222221 1111 22333332211 123333444599999999
Q ss_pred HHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCc
Q 003528 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (813)
Q Consensus 122 ~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~ 198 (813)
||+. +||||||||++||..+ ...+.+.+.++.+ ++|+|+|+|.+..+.. +++++++ ++|+|++.|++
T Consensus 478 Rall~~~~ILILDEaTSalD~~t------E~~I~~~l~~l~~--~rT~iiIaHRlsti~~-aD~IiVl-~~G~i~e~G~h 547 (567)
T COG1132 478 RALLRNPPILILDEATSALDTET------EALIQDALKKLLK--GRTTLIIAHRLSTIKN-ADRIIVL-DNGRIVERGTH 547 (567)
T ss_pred HHHhcCCCEEEEeccccccCHHh------HHHHHHHHHHHhc--CCEEEEEeccHhHHHh-CCEEEEE-ECCEEEEecCH
Confidence 9999 9999999999999999 9999999998763 5688889999987774 5555555 55999999999
Q ss_pred ccccCC
Q 003528 199 PQAHME 204 (813)
Q Consensus 199 ~e~~~~ 204 (813)
++++..
T Consensus 548 ~eLl~~ 553 (567)
T COG1132 548 EELLAK 553 (567)
T ss_pred HHHHHc
Confidence 988754
No 318
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.86 E-value=8.5e-22 Score=205.16 Aligned_cols=161 Identities=16% Similarity=0.159 Sum_probs=114.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----------eccceecccccCC-CchhHHHHhhCC-----
Q 003528 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----------TTKGIWMARCAGI-EPCTLIMDLEGT----- 101 (813)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----------~~~g~~~~~~~~~-e~~~~vld~~g~----- 101 (813)
.+|++++|+|+||||||||+++|+|+.. |++|+.. ...++.++..... .....+.++...
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 79 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLIP----PAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGH 79 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccc
Confidence 4799999999999999999999999987 8889731 1122223221110 011222232110
Q ss_pred ------Ccccc--------------------ccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHH
Q 003528 102 ------DGRER--------------------GEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVF 152 (813)
Q Consensus 102 ------~~~e~--------------------~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ 152 (813)
..... ......+||||++||+|++ +++|+||||++||+.+ .+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~------~~~l~ 153 (223)
T TIGR03771 80 IGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT------QELLT 153 (223)
T ss_pred cccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHH
Confidence 00000 0011123999999999999 9999999999999999 99999
Q ss_pred HHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccccCCccchhhh
Q 003528 153 QVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMETPLSEFF 211 (813)
Q Consensus 153 ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~~~~~l~d~f 211 (813)
+.+.++.++ |.|+|++|||++.+...+++++++ + |+++..|+..+...+..+.+.|
T Consensus 154 ~~l~~~~~~-~~tvii~sH~~~~~~~~~d~i~~l-~-G~i~~~~~~~~~~~~~~~~~~~ 209 (223)
T TIGR03771 154 ELFIELAGA-GTAILMTTHDLAQAMATCDRVVLL-N-GRVIADGTPQQLQDPAPWMTTF 209 (223)
T ss_pred HHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEE-C-CEEEeecCHHHhcChHHHHHHh
Confidence 999998764 899999999999877666766655 5 9999999887766655555544
No 319
>PLN03211 ABC transporter G-25; Provisional
Probab=99.86 E-value=1.1e-21 Score=233.59 Aligned_cols=193 Identities=13% Similarity=0.085 Sum_probs=131.4
Q ss_pred EEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCC--CCeee-----------ec
Q 003528 12 LIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF--KGRSQ-----------TT 78 (813)
Q Consensus 12 l~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~--sG~~q-----------~~ 78 (813)
+.|++++|++ +.+|+++|+++ .+|++++|+||||||||||||+|+|... |. +|++. ..
T Consensus 71 ~~~l~~~~~~---~~iL~~vs~~i--~~Ge~~aI~GpnGaGKSTLL~iLaG~~~----~~~~sG~I~inG~~~~~~~~~~ 141 (659)
T PLN03211 71 ISDETRQIQE---RTILNGVTGMA--SPGEILAVLGPSGSGKSTLLNALAGRIQ----GNNFTGTILANNRKPTKQILKR 141 (659)
T ss_pred cccccccCCC---CeeeeCCEEEE--ECCEEEEEECCCCCCHHHHHHHHhCCCC----CCceeEEEEECCEECchhhccc
Confidence 4455566654 67999999999 4899999999999999999999999986 43 67621 11
Q ss_pred cceecccccCCCchhHHHHhh----------------------------CCCcc-------ccccchHHHHHHHHHHHHH
Q 003528 79 KGIWMARCAGIEPCTLIMDLE----------------------------GTDGR-------ERGEDDTAFEKQSALFALA 123 (813)
Q Consensus 79 ~g~~~~~~~~~e~~~~vld~~----------------------------g~~~~-------e~~~~~~~~erQrv~iA~A 123 (813)
.+.+.+.. ...+..++.++. |+... ........+||||++||++
T Consensus 142 i~yv~Q~~-~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~a 220 (659)
T PLN03211 142 TGFVTQDD-ILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHE 220 (659)
T ss_pred eEEECccc-ccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHH
Confidence 12222221 111111222211 11110 0011123349999999999
Q ss_pred HH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCC-CcccccCcceeeecCCeEEEecCcc
Q 003528 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT-RTPLENLEPVLREDIQKIWDSVPKP 199 (813)
Q Consensus 124 La---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~-~~~~~~~~~vll~~~GkI~~~g~~~ 199 (813)
|+ +||||||||+|||+.. ...+.+.++++.++ |+|||++||+++ .+...+++++++. +|+++..|++.
T Consensus 221 L~~~P~iLlLDEPtsgLD~~~------~~~l~~~L~~l~~~-g~TvI~~sH~~~~~i~~~~D~iilL~-~G~iv~~G~~~ 292 (659)
T PLN03211 221 MLINPSLLILDEPTSGLDATA------AYRLVLTLGSLAQK-GKTIVTSMHQPSSRVYQMFDSVLVLS-EGRCLFFGKGS 292 (659)
T ss_pred HHhCCCEEEEeCCCCCcCHHH------HHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEec-CCcEEEECCHH
Confidence 99 9999999999999999 99999999999864 899999999997 4555556555555 59999999876
Q ss_pred cccCCccchhhhcccccccccchhhHHHH
Q 003528 200 QAHMETPLSEFFNVEVVALSSFEEKEELF 228 (813)
Q Consensus 200 e~~~~~~l~d~f~~~~~~lp~~~~~~e~f 228 (813)
+. .++|..--...|.+.+..|.+
T Consensus 293 ~~------~~~f~~~G~~~P~~~NpADf~ 315 (659)
T PLN03211 293 DA------MAYFESVGFSPSFPMNPADFL 315 (659)
T ss_pred HH------HHHHHHCCCCCCCCCCHHHHH
Confidence 53 345544333445444433333
No 320
>PLN03073 ABC transporter F family; Provisional
Probab=99.85 E-value=2.6e-21 Score=231.95 Aligned_cols=171 Identities=14% Similarity=0.109 Sum_probs=124.4
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----ccceec
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----TKGIWM 83 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----~~g~~~ 83 (813)
++|++.|+++.|++. ..+|+++||++ .+|++++|+|||||||||||++|+|+.+ |++|++.. ..+++.
T Consensus 507 ~~L~~~~ls~~y~~~--~~il~~vsl~i--~~Ge~i~LvG~NGsGKSTLLk~L~Gll~----p~~G~I~~~~~~~igyv~ 578 (718)
T PLN03073 507 PIISFSDASFGYPGG--PLLFKNLNFGI--DLDSRIAMVGPNGIGKSTILKLISGELQ----PSSGTVFRSAKVRMAVFS 578 (718)
T ss_pred ceEEEEeeEEEeCCC--CeeEeccEEEE--cCCCEEEEECCCCCcHHHHHHHHhCCCC----CCCceEEECCceeEEEEe
Confidence 479999999999642 46999999999 5899999999999999999999999998 89998431 233433
Q ss_pred ccccC----CCchhH----------------HHHhhCCCc---cccccchHHHHHHHHHHHHHHH---hHhhhccCCCCC
Q 003528 84 ARCAG----IEPCTL----------------IMDLEGTDG---RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDI 137 (813)
Q Consensus 84 ~~~~~----~e~~~~----------------vld~~g~~~---~e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgL 137 (813)
+.... ..+... +++..|+.. .........+||||++||++++ ++|||||||++|
T Consensus 579 Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~L 658 (718)
T PLN03073 579 QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHL 658 (718)
T ss_pred ccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 33211 011111 111112211 0111223345999999999999 999999999999
Q ss_pred CchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEE-EecC
Q 003528 138 GREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW-DSVP 197 (813)
Q Consensus 138 D~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~-~~g~ 197 (813)
|+.+ ...+.+.+.+. .| |||+||||+.++...+++++++.+ |+++ ..|+
T Consensus 659 D~~s------~~~l~~~L~~~---~g-tvIivSHd~~~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 659 DLDA------VEALIQGLVLF---QG-GVLMVSHDEHLISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred CHHH------HHHHHHHHHHc---CC-EEEEEECCHHHHHHhCCEEEEEEC-CEEEEeCCC
Confidence 9999 88888877764 24 999999999988766666665554 9987 4554
No 321
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.85 E-value=1.7e-21 Score=211.34 Aligned_cols=189 Identities=13% Similarity=0.147 Sum_probs=143.1
Q ss_pred CccEEEEeeeEEecc-ccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCC-CCCCeee--------
Q 003528 7 CCSTQLIDGDGTFNV-SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD-AFKGRSQ-------- 76 (813)
Q Consensus 7 ~~~Iel~dls~~y~~-~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~-p~sG~~q-------- 76 (813)
++.|.++|++..|.. ++...++++|||++ ..||.++|+|.+|||||-..+.++|+++..-. ..+|+..
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i--~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~ 81 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDI--EAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeee--cCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhc
Confidence 457999999999973 22467999999999 58999999999999999999999999973100 1123310
Q ss_pred -----------eccceecccccC-CCchhHH--------------------------HHhhCCCcccccc-----chHHH
Q 003528 77 -----------TTKGIWMARCAG-IEPCTLI--------------------------MDLEGTDGRERGE-----DDTAF 113 (813)
Q Consensus 77 -----------~~~g~~~~~~~~-~e~~~~v--------------------------ld~~g~~~~e~~~-----~~~~~ 113 (813)
...+++|+.... .++...+ ++..|++..++.- ....+
T Consensus 82 ~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGG 161 (534)
T COG4172 82 ASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGG 161 (534)
T ss_pred CCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcc
Confidence 123456665432 2222222 2222332222111 01123
Q ss_pred HHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCC
Q 003528 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (813)
Q Consensus 114 erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~G 190 (813)
|||||+||+||+ ++||.||||++||..- +.+|++++++|.++.|+.++|||||++.+...++++.+|.+ |
T Consensus 162 qRQRVMIAMALan~P~lLIADEPTTALDVtv------QaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~-G 234 (534)
T COG4172 162 QRQRVMIAMALANEPDLLIADEPTTALDVTV------QAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQH-G 234 (534)
T ss_pred hhhHHHHHHHHcCCCCeEeecCCcchhhhhh------HHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEec-c
Confidence 999999999999 9999999999999999 99999999999999999999999999999988888888877 9
Q ss_pred eEEEecCcccccCC
Q 003528 191 KIWDSVPKPQAHME 204 (813)
Q Consensus 191 kI~~~g~~~e~~~~ 204 (813)
+|++.|....+|..
T Consensus 235 ~ivE~~~t~~lF~~ 248 (534)
T COG4172 235 EIVETGTTETLFAA 248 (534)
T ss_pred EEeecCcHHHHhhC
Confidence 99999998887653
No 322
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.85 E-value=1.3e-21 Score=193.04 Aligned_cols=185 Identities=14% Similarity=0.124 Sum_probs=140.6
Q ss_pred CccEEEEeeeEEeccc------cccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----
Q 003528 7 CCSTQLIDGDGTFNVS------GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ---- 76 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~------~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q---- 76 (813)
++.+++.|++|.|... ....+++.|||++ ..|+.++|||.||||||||.++|+|..+ |++|+..
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL--~~~QTlaiIG~NGSGKSTLakMlaGmi~----PTsG~il~n~~ 75 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTL--REGQTLAIIGENGSGKSTLAKMLAGMIE----PTSGEILINDH 75 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEe--cCCcEEEEEccCCCcHhHHHHHHhcccC----CCCceEEECCc
Confidence 4578999999998631 1235789999999 5899999999999999999999999998 9999931
Q ss_pred -----------eccceecccccC-CCchhHHHHhh--------CCCccccccc---------------------hHHHHH
Q 003528 77 -----------TTKGIWMARCAG-IEPCTLIMDLE--------GTDGRERGED---------------------DTAFEK 115 (813)
Q Consensus 77 -----------~~~g~~~~~~~~-~e~~~~vld~~--------g~~~~e~~~~---------------------~~~~er 115 (813)
....++|+.... +.+..-+-... .++...|.+. ....||
T Consensus 76 ~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QK 155 (267)
T COG4167 76 PLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQK 155 (267)
T ss_pred cccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhH
Confidence 112344554433 11111111111 0111111111 111299
Q ss_pred HHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeE
Q 003528 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (813)
Q Consensus 116 Qrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI 192 (813)
|||++||||. +|+|.||...+||... +.++.+++++|.++.|.+.|+|+.+++.+....+.+++|.+ |++
T Consensus 156 QRVaLARALIL~P~iIIaDeAl~~LD~sm------rsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~E-G~v 228 (267)
T COG4167 156 QRVALARALILRPKIIIADEALASLDMSM------RSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHE-GEV 228 (267)
T ss_pred HHHHHHHHHhcCCcEEEehhhhhhccHHH------HHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEec-Cce
Confidence 9999999999 9999999999999998 99999999999999999999999999999887777776666 999
Q ss_pred EEecCcccccCC
Q 003528 193 WDSVPKPQAHME 204 (813)
Q Consensus 193 ~~~g~~~e~~~~ 204 (813)
++.|++.+++.+
T Consensus 229 vE~G~t~~v~a~ 240 (267)
T COG4167 229 VERGSTADVLAS 240 (267)
T ss_pred eecCChhhhhcC
Confidence 999999988765
No 323
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=2e-21 Score=190.27 Aligned_cols=182 Identities=14% Similarity=0.069 Sum_probs=134.8
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ---------- 76 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q---------- 76 (813)
.|.+++.++++.|++ ..-.++|||.+ .+|++++|+|.+||||||||++|.|-+. |+.|...
T Consensus 4 ~PLL~V~~lsk~Yg~---~~gc~~vsF~l--~PGeVLgiVGESGSGKtTLL~~is~rl~----p~~G~v~Y~~r~~~~~d 74 (258)
T COG4107 4 KPLLSVSGLSKLYGP---GKGCRDVSFDL--YPGEVLGIVGESGSGKTTLLKCISGRLT----PDAGTVTYRMRDGQPRD 74 (258)
T ss_pred CcceeehhhhhhhCC---CcCccccceee--cCCcEEEEEecCCCcHHhHHHHHhcccC----CCCCeEEEEcCCCCchh
Confidence 357999999999988 57899999999 6899999999999999999999999998 8999821
Q ss_pred --------------eccceecccccC-C-----------Cchh-HHHHhhC--------------CCc---cccccchHH
Q 003528 77 --------------TTKGIWMARCAG-I-----------EPCT-LIMDLEG--------------TDG---RERGEDDTA 112 (813)
Q Consensus 77 --------------~~~g~~~~~~~~-~-----------e~~~-~vld~~g--------------~~~---~e~~~~~~~ 112 (813)
+.-|.+-++... . +-.+ .....+| ++. .........
T Consensus 75 l~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSG 154 (258)
T COG4107 75 LYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSG 154 (258)
T ss_pred HhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccch
Confidence 111222221110 0 0000 0000001 000 000001112
Q ss_pred HHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecC
Q 003528 113 FEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDI 189 (813)
Q Consensus 113 ~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~ 189 (813)
.|+||+.||+-|. +++++||||.|||..- +..++++++.+..+.+..+++||||+..+...+.+..+|.+
T Consensus 155 GMqQRLQiARnLVt~PrLvfMDEPTGGLDVSV------QARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~- 227 (258)
T COG4107 155 GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSV------QARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQ- 227 (258)
T ss_pred HHHHHHHHHHHhccCCceEEecCCCCCcchhh------HHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecC-
Confidence 3999999999999 9999999999999998 99999999999988899999999999998876666666655
Q ss_pred CeEEEecCcccccCC
Q 003528 190 QKIWDSVPKPQAHME 204 (813)
Q Consensus 190 GkI~~~g~~~e~~~~ 204 (813)
|++++.|-+..++.+
T Consensus 228 g~vve~GLTDrvLDD 242 (258)
T COG4107 228 GQVVESGLTDRVLDD 242 (258)
T ss_pred CCEeccccccccccC
Confidence 999999988777644
No 324
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.85 E-value=6.5e-21 Score=223.36 Aligned_cols=171 Identities=15% Similarity=0.120 Sum_probs=124.2
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------ 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------ 76 (813)
.|+++|++++|+++ .++|+++||++ .+|+.++|+||||||||||+++|+|+.. |++|+..
T Consensus 322 ~i~~~~v~f~y~~~--~~~l~~i~~~i--~~G~~~aivG~sGsGKSTL~~ll~g~~~----~~~G~i~~~g~~~~~~~~~ 393 (547)
T PRK10522 322 TLELRNVTFAYQDN--GFSVGPINLTI--KRGELLFLIGGNGSGKSTLAMLLTGLYQ----PQSGEILLDGKPVTAEQPE 393 (547)
T ss_pred eEEEEEEEEEeCCC--CeEEecceEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEECCEECCCCCHH
Confidence 59999999999752 56999999999 5899999999999999999999999997 8999831
Q ss_pred ---eccceecccccC-----CCc--------hhHHHHhhCCCcc----c---cccchHHHHHHHHHHHHHHH---hHhhh
Q 003528 77 ---TTKGIWMARCAG-----IEP--------CTLIMDLEGTDGR----E---RGEDDTAFEKQSALFALAVS---DIVLI 130 (813)
Q Consensus 77 ---~~~g~~~~~~~~-----~e~--------~~~vld~~g~~~~----e---~~~~~~~~erQrv~iA~ALa---dvLLL 130 (813)
...++..+.... .++ ..-..+..+.... + .+.....+||||++||||++ ++||+
T Consensus 394 ~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ilil 473 (547)
T PRK10522 394 DYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLL 473 (547)
T ss_pred HHhhheEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 011122221110 111 0011112222211 0 12345567999999999999 99999
Q ss_pred ccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEe
Q 003528 131 NMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (813)
Q Consensus 131 DEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~ 195 (813)
||||++||+.+ .+.+.+.+.+..+..++|+|+|||+++... .+++++++ ++|++++.
T Consensus 474 DE~ts~LD~~~------~~~i~~~l~~~~~~~~~tvi~itH~~~~~~-~~d~i~~l-~~G~i~e~ 530 (547)
T PRK10522 474 DEWAADQDPHF------RREFYQVLLPLLQEMGKTIFAISHDDHYFI-HADRLLEM-RNGQLSEL 530 (547)
T ss_pred ECCCCCCCHHH------HHHHHHHHHHHHHhCCCEEEEEEechHHHH-hCCEEEEE-ECCEEEEe
Confidence 99999999999 889988887665434789999999997655 35555555 55999865
No 325
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.84 E-value=3.9e-21 Score=204.52 Aligned_cols=166 Identities=13% Similarity=0.045 Sum_probs=115.2
Q ss_pred EeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----------ecccee
Q 003528 13 IDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----------TTKGIW 82 (813)
Q Consensus 13 ~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----------~~~g~~ 82 (813)
.+++++|++. ..+|+++++ + .+|++++|+||||||||||||+|+|+.+ |++|+.. ...|.-
T Consensus 4 ~~~~~~y~~~--~~~l~~i~~-i--~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~----p~~G~I~~~~~~~~~~~~~~g~~ 74 (255)
T cd03236 4 DEPVHRYGPN--SFKLHRLPV-P--REGQVLGLVGPNGIGKSTALKILAGKLK----PNLGKFDDPPDWDEILDEFRGSE 74 (255)
T ss_pred cCcceeecCc--chhhhcCCC-C--CCCCEEEEECCCCCCHHHHHHHHhCCcC----CCCceEeeccccchhhhhccCch
Confidence 3688999652 368999995 6 5899999999999999999999999998 8899852 011100
Q ss_pred c-----------------ccccCCCchhH---HHH----------------hhCCCcc--ccccchHHHHHHHHHHHHHH
Q 003528 83 M-----------------ARCAGIEPCTL---IMD----------------LEGTDGR--ERGEDDTAFEKQSALFALAV 124 (813)
Q Consensus 83 ~-----------------~~~~~~e~~~~---vld----------------~~g~~~~--e~~~~~~~~erQrv~iA~AL 124 (813)
. .+.....+..+ +.+ ..|+... ........+|+||++||+++
T Consensus 75 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral 154 (255)
T cd03236 75 LQNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAAL 154 (255)
T ss_pred hhhhhHHhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 0 00001111000 001 1111110 01111223499999999999
Q ss_pred H---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEec
Q 003528 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (813)
Q Consensus 125 a---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g 196 (813)
+ +++|+||||++||+.. ...+.+++.++.++ +.|||++|||++.+...+++++ +++ |++.+.|
T Consensus 155 ~~~p~illlDEPts~LD~~~------~~~l~~~l~~l~~~-~~tIIiiSHd~~~~~~~ad~i~-~l~-~~~~~~~ 220 (255)
T cd03236 155 ARDADFYFFDEPSSYLDIKQ------RLNAARLIRELAED-DNYVLVVEHDLAVLDYLSDYIH-CLY-GEPGAYG 220 (255)
T ss_pred HhCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEE-EEC-CCCCcce
Confidence 9 9999999999999999 99999999998764 8999999999988775555554 445 6675443
No 326
>PLN03232 ABC transporter C family member; Provisional
Probab=99.84 E-value=7.1e-21 Score=244.63 Aligned_cols=177 Identities=15% Similarity=0.107 Sum_probs=133.6
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------ 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------ 76 (813)
.|+++|++++|.++ ..++|+|+||++ .+|+.+||+|++|||||||+++|+|+.. |++|++.
T Consensus 1234 ~I~f~nVsf~Y~~~-~~~vL~~isl~I--~~GekvaIVG~SGSGKSTL~~lL~rl~~----p~~G~I~IdG~di~~i~~~ 1306 (1495)
T PLN03232 1234 SIKFEDVHLRYRPG-LPPVLHGLSFFV--SPSEKVGVVGRTGAGKSSMLNALFRIVE----LEKGRIMIDDCDVAKFGLT 1306 (1495)
T ss_pred cEEEEEEEEEECCC-CCcccccceEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCc----CCCceEEECCEEhhhCCHH
Confidence 49999999999652 257999999999 5899999999999999999999999997 9999831
Q ss_pred ---eccceecccccCCCchhHHHHhh-----------------------------CCCc--cccccchHHHHHHHHHHHH
Q 003528 77 ---TTKGIWMARCAGIEPCTLIMDLE-----------------------------GTDG--RERGEDDTAFEKQSALFAL 122 (813)
Q Consensus 77 ---~~~g~~~~~~~~~e~~~~vld~~-----------------------------g~~~--~e~~~~~~~~erQrv~iA~ 122 (813)
...+++.|....+ + -++.+|. |++. .+.+.....+||||++|||
T Consensus 1307 ~lR~~i~iVpQdp~LF-~-gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLAR 1384 (1495)
T PLN03232 1307 DLRRVLSIIPQSPVLF-S-GTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLAR 1384 (1495)
T ss_pred HHHhhcEEECCCCeee-C-ccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHH
Confidence 1122232222110 0 0111221 1111 1223334456999999999
Q ss_pred HHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcc
Q 003528 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (813)
Q Consensus 123 ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~ 199 (813)
||. +||||||||++||+++ .+.|.+.+++.++ ++|+|+|+|+++.+.. +|+++++ ++|+|++.|++.
T Consensus 1385 ALLr~~~ILILDEATSaLD~~T------e~~Iq~~L~~~~~--~~TvI~IAHRl~ti~~-~DrIlVL-~~G~ivE~Gt~~ 1454 (1495)
T PLN03232 1385 ALLRRSKILVLDEATASVDVRT------DSLIQRTIREEFK--SCTMLVIAHRLNTIID-CDKILVL-SSGQVLEYDSPQ 1454 (1495)
T ss_pred HHHhCCCEEEEECCcccCCHHH------HHHHHHHHHHHcC--CCEEEEEeCCHHHHHh-CCEEEEE-ECCEEEEECCHH
Confidence 999 9999999999999999 9999999998864 7899999999987763 5555555 559999999999
Q ss_pred cccCC
Q 003528 200 QAHME 204 (813)
Q Consensus 200 e~~~~ 204 (813)
+++++
T Consensus 1455 eLl~~ 1459 (1495)
T PLN03232 1455 ELLSR 1459 (1495)
T ss_pred HHHhC
Confidence 88754
No 327
>PLN03130 ABC transporter C family member; Provisional
Probab=99.84 E-value=8.2e-21 Score=244.63 Aligned_cols=177 Identities=16% Similarity=0.117 Sum_probs=134.2
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------ 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------ 76 (813)
.|+++|++++|.++ ..++|+++||++ .+|+.+||+|++|||||||+++|+|+.. |++|++.
T Consensus 1237 ~I~f~nVsf~Y~~~-~~~VL~~is~~I--~~GekVaIVGrSGSGKSTLl~lL~rl~~----p~~G~I~IDG~dI~~i~l~ 1309 (1622)
T PLN03130 1237 SIKFEDVVLRYRPE-LPPVLHGLSFEI--SPSEKVGIVGRTGAGKSSMLNALFRIVE----LERGRILIDGCDISKFGLM 1309 (1622)
T ss_pred cEEEEEEEEEeCCC-CCceecceeEEE--cCCCEEEEECCCCCCHHHHHHHHhCcCC----CCCceEEECCEecccCCHH
Confidence 49999999999752 247999999999 5899999999999999999999999997 8999831
Q ss_pred ---eccceecccccCCCchhHHHHhh-----------------------------CCCc--cccccchHHHHHHHHHHHH
Q 003528 77 ---TTKGIWMARCAGIEPCTLIMDLE-----------------------------GTDG--RERGEDDTAFEKQSALFAL 122 (813)
Q Consensus 77 ---~~~g~~~~~~~~~e~~~~vld~~-----------------------------g~~~--~e~~~~~~~~erQrv~iA~ 122 (813)
...+++.|....+ + -++.+|+ |++. .+.+.....+||||++|||
T Consensus 1310 ~LR~~IsiVpQdp~LF-~-GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLAR 1387 (1622)
T PLN03130 1310 DLRKVLGIIPQAPVLF-S-GTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLAR 1387 (1622)
T ss_pred HHHhccEEECCCCccc-c-ccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHH
Confidence 1122333322110 0 0122221 1111 1223334456999999999
Q ss_pred HHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcc
Q 003528 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (813)
Q Consensus 123 ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~ 199 (813)
||. +||||||||++||..+ -+.|.+.+++.++ ++|+|+|+|+++.+.. ++++++ +++|+|++.|++.
T Consensus 1388 ALLr~p~ILILDEATSaLD~~T------e~~Iq~~I~~~~~--~~TvI~IAHRL~tI~~-~DrIlV-Ld~G~IvE~Gt~~ 1457 (1622)
T PLN03130 1388 ALLRRSKILVLDEATAAVDVRT------DALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILV-LDAGRVVEFDTPE 1457 (1622)
T ss_pred HHHcCCCEEEEECCCCCCCHHH------HHHHHHHHHHHCC--CCEEEEEeCChHHHHh-CCEEEE-EECCEEEEeCCHH
Confidence 999 9999999999999999 8999999999864 7899999999988763 555554 5559999999999
Q ss_pred cccCC
Q 003528 200 QAHME 204 (813)
Q Consensus 200 e~~~~ 204 (813)
+++++
T Consensus 1458 eLl~~ 1462 (1622)
T PLN03130 1458 NLLSN 1462 (1622)
T ss_pred HHHhC
Confidence 88753
No 328
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.84 E-value=1e-20 Score=218.72 Aligned_cols=169 Identities=17% Similarity=0.162 Sum_probs=123.8
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccc---eec
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG---IWM 83 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g---~~~ 83 (813)
|.+|++.|+++.|++ +.+++++||++ .+|+.+||||+||||||||||+|+|... |++|++....+ .++
T Consensus 1 m~~i~~~~ls~~~g~---~~l~~~~~l~~--~~G~riGLvG~NGaGKSTLLkilaG~~~----~~~G~i~~~~~~~v~~l 71 (530)
T COG0488 1 MSMITLENLSLAYGD---RPLLENVSLTL--NPGERIGLVGRNGAGKSTLLKILAGELE----PDSGEVTRPKGLRVGYL 71 (530)
T ss_pred CceEEEeeeEEeeCC---ceeecCCccee--CCCCEEEEECCCCCCHHHHHHHHcCCCc----CCCCeEeecCCceEEEe
Confidence 357999999999966 78999999999 5899999999999999999999999997 99999644432 233
Q ss_pred ccccCCCchhHHHHhh-------------------------------------------------------CCCcc-ccc
Q 003528 84 ARCAGIEPCTLIMDLE-------------------------------------------------------GTDGR-ERG 107 (813)
Q Consensus 84 ~~~~~~e~~~~vld~~-------------------------------------------------------g~~~~-e~~ 107 (813)
.+.....+...+.+.. |.... ...
T Consensus 72 ~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~ 151 (530)
T COG0488 72 SQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPV 151 (530)
T ss_pred CCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCch
Confidence 3332222211111110 11110 011
Q ss_pred cchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcce
Q 003528 108 EDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPV 184 (813)
Q Consensus 108 ~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~v 184 (813)
.....+||.||++|++|. |+|||||||+.||.++ ..-+-+.|.+. .| |+|+||||-.+....|.+++
T Consensus 152 ~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~------i~WLe~~L~~~---~g-tviiVSHDR~FLd~V~t~I~ 221 (530)
T COG0488 152 SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLES------IEWLEDYLKRY---PG-TVIVVSHDRYFLDNVATHIL 221 (530)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHH------HHHHHHHHHhC---CC-cEEEEeCCHHHHHHHhhheE
Confidence 112234999999999999 9999999999999998 88888877754 36 99999999999886665555
Q ss_pred eeecCCeEEEe
Q 003528 185 LREDIQKIWDS 195 (813)
Q Consensus 185 ll~~~GkI~~~ 195 (813)
-+ +.|++...
T Consensus 222 ~l-d~g~l~~y 231 (530)
T COG0488 222 EL-DRGKLTPY 231 (530)
T ss_pred Ee-cCCceeEe
Confidence 44 44876543
No 329
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=4.7e-21 Score=193.73 Aligned_cols=180 Identities=18% Similarity=0.176 Sum_probs=132.1
Q ss_pred cEEEEeeeEEecccc--ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------ec--
Q 003528 9 STQLIDGDGTFNVSG--IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------TT-- 78 (813)
Q Consensus 9 ~Iel~dls~~y~~~~--~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------~~-- 78 (813)
|+.+.|..+.|.++. .+++|+++|+++ ..|++|.|+|.||||||||+|+|+|-+. |++|++. +.
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I--~~g~FvtViGsNGAGKSTlln~iaG~l~----~t~G~I~Idg~dVtk~~ 74 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEI--AEGDFVTVIGSNGAGKSTLLNAIAGDLK----PTSGQILIDGVDVTKKS 74 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceee--cCCceEEEEcCCCccHHHHHHHhhCccc----cCCceEEECceecccCC
Confidence 477889999886522 467999999999 5899999999999999999999999998 9999831 10
Q ss_pred -------cceecccccC-------CCchhHHHHhhCC----Cc--cccccc-----------------------hHHHHH
Q 003528 79 -------KGIWMARCAG-------IEPCTLIMDLEGT----DG--RERGED-----------------------DTAFEK 115 (813)
Q Consensus 79 -------~g~~~~~~~~-------~e~~~~vld~~g~----~~--~e~~~~-----------------------~~~~er 115 (813)
...++|.+.. .+.++...+..|- .. ..+... ...+||
T Consensus 75 ~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQR 154 (263)
T COG1101 75 VAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQR 154 (263)
T ss_pred HHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHH
Confidence 1112232211 1222222222221 11 000000 001299
Q ss_pred HHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeE
Q 003528 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (813)
Q Consensus 116 Qrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI 192 (813)
|.+++++|.. +||+|||-|++|||.. ...|++.-.++.++.+.|.++|||+++.+..+ .++.++++.|+|
T Consensus 155 QalsL~MAtl~~pkiLLLDEHTAALDPkt------a~~vm~lT~kiV~~~klTtlMVTHnm~~Al~y-G~RlImLh~G~I 227 (263)
T COG1101 155 QALSLLMATLHPPKILLLDEHTAALDPKT------AEFVMELTAKIVEEHKLTTLMVTHNMEDALDY-GNRLIMLHSGKI 227 (263)
T ss_pred HHHHHHHHhcCCCcEEEecchhhcCCcch------HHHHHHHHHHHHHhcCCceEEEeccHHHHHhh-CCeEEEEeCCeE
Confidence 9999999999 9999999999999999 99999999999988899999999999887754 455666666999
Q ss_pred EEecCcccc
Q 003528 193 WDSVPKPQA 201 (813)
Q Consensus 193 ~~~g~~~e~ 201 (813)
+.+...++-
T Consensus 228 vlDv~g~~k 236 (263)
T COG1101 228 VLDVTGEEK 236 (263)
T ss_pred EEEcccccc
Confidence 998876664
No 330
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.83 E-value=2.1e-21 Score=189.45 Aligned_cols=168 Identities=13% Similarity=0.115 Sum_probs=119.1
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------ 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------ 76 (813)
.++++++.+.-.+ ..+|+++||.+ .+|+.++|.||+|||||||+|+++.+.. |++|...
T Consensus 3 lle~kq~~y~a~~---a~il~~isl~v--~~Ge~iaitGPSG~GKStllk~va~Lis----p~~G~l~f~Ge~vs~~~pe 73 (223)
T COG4619 3 LLELKQVGYLAGD---AKILNNISLSV--RAGEFIAITGPSGCGKSTLLKIVASLIS----PTSGTLLFEGEDVSTLKPE 73 (223)
T ss_pred chHHHHHHhhcCC---Ceeecceeeee--cCCceEEEeCCCCccHHHHHHHHHhccC----CCCceEEEcCccccccChH
Confidence 4566666544444 68999999999 5899999999999999999999999998 9999821
Q ss_pred ---eccceeccccc-----CCCchhHHHHhhC----------------CCccc---cccchHHHHHHHHHHHHHHH---h
Q 003528 77 ---TTKGIWMARCA-----GIEPCTLIMDLEG----------------TDGRE---RGEDDTAFEKQSALFALAVS---D 126 (813)
Q Consensus 77 ---~~~g~~~~~~~-----~~e~~~~vld~~g----------------~~~~e---~~~~~~~~erQrv~iA~ALa---d 126 (813)
+...++++... ..+|..|...... ++... +..+...+|+||++++|-|. +
T Consensus 74 a~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ 153 (223)
T COG4619 74 AYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPK 153 (223)
T ss_pred HHHHHHHHHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCc
Confidence 11112222211 1233333332211 11100 11111223999999999999 9
Q ss_pred HhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeE
Q 003528 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (813)
Q Consensus 127 vLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI 192 (813)
||||||||++||+.+ .+.|-+++.+++.+....+++||||.+.+.+.+++++-+.. |++
T Consensus 154 ILLLDE~TsALD~~n------kr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~-G~~ 212 (223)
T COG4619 154 ILLLDEITSALDESN------KRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQP-GHA 212 (223)
T ss_pred eEEecCchhhcChhh------HHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEecc-Ccc
Confidence 999999999999999 99999999999977799999999999886654444443333 654
No 331
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.83 E-value=1.8e-20 Score=220.09 Aligned_cols=173 Identities=14% Similarity=0.081 Sum_probs=121.5
Q ss_pred cEEEEeeeEEecccc--ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee---------
Q 003528 9 STQLIDGDGTFNVSG--IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT--------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~--~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~--------- 77 (813)
.|+++|++++|++.. ...+|+++||++ .+|++++|+||||||||||+++|+|+.. |++|+..-
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i--~~G~~~aivG~sGsGKSTl~~ll~g~~~----p~~G~i~~~g~~i~~~~ 410 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRI--AQGDIVFIVGENGCGKSTLAKLFCGLYI----PQEGEILLDGAAVSADS 410 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEE--cCCcEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEECCEECCCCC
Confidence 599999999997521 135999999999 5899999999999999999999999997 99998311
Q ss_pred ------ccceecccccC-----CCc---------hhHHHHhhCCCcc--------ccccchHHHHHHHHHHHHHHH---h
Q 003528 78 ------TKGIWMARCAG-----IEP---------CTLIMDLEGTDGR--------ERGEDDTAFEKQSALFALAVS---D 126 (813)
Q Consensus 78 ------~~g~~~~~~~~-----~e~---------~~~vld~~g~~~~--------e~~~~~~~~erQrv~iA~ALa---d 126 (813)
..+...+.... .++ ..-.++..+.... +.......+||||++||||+. +
T Consensus 411 ~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ 490 (555)
T TIGR01194 411 RDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRP 490 (555)
T ss_pred HHHHHhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 11222222110 011 0111112222110 011223446999999999999 9
Q ss_pred HhhhccCCCCCCchhhcChhhHHHHHHHHHH-hhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEec
Q 003528 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMR-LFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (813)
Q Consensus 127 vLLLDEPtsgLD~~~~a~~~l~~~v~ell~~-L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g 196 (813)
++|+||||++||+.+ .+.+.+.+.+ +.. .++|+|+|||+++... .+++++++ ++|+|++..
T Consensus 491 ililDE~ts~LD~~~------~~~i~~~l~~~~~~-~~~tiiiisH~~~~~~-~~d~i~~l-~~G~i~~~~ 552 (555)
T TIGR01194 491 ILLFDEWAADQDPAF------KRFFYEELLPDLKR-QGKTIIIISHDDQYFE-LADQIIKL-AAGCIVKDT 552 (555)
T ss_pred EEEEeCCccCCCHHH------HHHHHHHHHHHHHh-CCCEEEEEeccHHHHH-hCCEEEEE-ECCEEEEec
Confidence 999999999999999 8888887653 433 4889999999997654 45555555 459997653
No 332
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=3.8e-21 Score=200.58 Aligned_cols=168 Identities=15% Similarity=0.186 Sum_probs=127.1
Q ss_pred eecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCee-------------------eeccceecccccCC
Q 003528 29 KEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS-------------------QTTKGIWMARCAGI 89 (813)
Q Consensus 29 ~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~-------------------q~~~g~~~~~~~~~ 89 (813)
=+++|..+ .-.+++|+|++|||||||+|+|+|+.. |+.|++ +...|++||... .
T Consensus 15 l~a~~~~p--~~GvTAlFG~SGsGKTslin~IaGL~r----PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDAR-L 87 (352)
T COG4148 15 LDANFTLP--ARGITALFGPSGSGKTSLINMIAGLTR----PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDAR-L 87 (352)
T ss_pred EEEeccCC--CCceEEEecCCCCChhhHHHHHhccCC----ccccEEEECCEEeecccCCcccChhhheeeeEeeccc-c
Confidence 35688873 348999999999999999999999998 999982 123455555432 2
Q ss_pred CchhHHHHhh-------------------CCCcc--ccccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcCh
Q 003528 90 EPCTLIMDLE-------------------GTDGR--ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANK 145 (813)
Q Consensus 90 e~~~~vld~~-------------------g~~~~--e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~ 145 (813)
.+.+.|..|. |+..- .+......+|||||+|+|||. ++||+|||.++||..-
T Consensus 88 FpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~R---- 163 (352)
T COG4148 88 FPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR---- 163 (352)
T ss_pred ccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccch----
Confidence 2222222222 22110 111222334999999999999 9999999999999998
Q ss_pred hhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccccCCccchhh
Q 003528 146 PLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMETPLSEF 210 (813)
Q Consensus 146 ~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~~~~~l~d~ 210 (813)
..+++-.+.+|.++.++.|++|||.++++.+.+++++++.+ |++.+.|..++++....+.-.
T Consensus 164 --K~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~-GkV~A~g~~e~v~~~~~~~p~ 225 (352)
T COG4148 164 --KREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLEN-GKVKASGPLEEVWGSPDFPPW 225 (352)
T ss_pred --hhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecC-CeEEecCcHHHHhcCcccCcc
Confidence 99999999999999999999999999988877777666655 999999999998876554433
No 333
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.83 E-value=4.2e-21 Score=211.09 Aligned_cols=148 Identities=16% Similarity=0.142 Sum_probs=107.6
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-------------ccceecccccCCCchhHHHHhhC-------CCcc
Q 003528 45 IMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT-------------TKGIWMARCAGIEPCTLIMDLEG-------TDGR 104 (813)
Q Consensus 45 IiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~-------------~~g~~~~~~~~~e~~~~vld~~g-------~~~~ 104 (813)
|+|||||||||||++|+|+.+ |++|++.- ..++.++.. ...+...+.++.. ....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~----p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~-~l~~~~tv~enl~~~~~~~~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ----PDSGSIMLDGEDVTNVPPHLRHINMVFQSY-ALFPHMTVEENVAFGLKMRKVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC----CCceEEEECCEECCCCCHHHCCEEEEecCc-cccCCCcHHHHHHHHHhhcCCCHH
Confidence 689999999999999999998 88998310 122333332 2222223333321 1111
Q ss_pred ccc--------------------cchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcC
Q 003528 105 ERG--------------------EDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP 161 (813)
Q Consensus 105 e~~--------------------~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~ 161 (813)
+.. .....+||||++||+||+ ++|||||||++||+.. +..+.+.++++.++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~------~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKL------RDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHHh
Confidence 000 011123999999999999 9999999999999999 99999999999876
Q ss_pred CCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccccCC
Q 003528 162 RKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHME 204 (813)
Q Consensus 162 ~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~~~ 204 (813)
.|+|+|+||||++++...+++++++.+ |+|...|++.+++..
T Consensus 150 ~g~tiiivTHd~~e~~~~~d~i~vl~~-G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 150 LGITFVFVTHDQEEAMTMSDRIAIMRK-GKIAQIGTPEEIYEE 191 (325)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEEcCHHHHHhC
Confidence 689999999999988766666666655 999999988877643
No 334
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.83 E-value=2.7e-20 Score=217.05 Aligned_cols=147 Identities=20% Similarity=0.183 Sum_probs=111.4
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-----------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----------- 77 (813)
.|+++|++++|+++ +.+|+|+||++ .+|+.++|+||||||||||+|+|+|+.. |++|+..-
T Consensus 334 ~I~~~~vsf~Y~~~--~~vL~~isl~i--~~G~~vaIvG~SGsGKSTLl~lL~g~~~----p~~G~I~i~g~~i~~~~~~ 405 (529)
T TIGR02868 334 TLELRDLSFGYPGS--PPVLDGVSLDL--PPGERVAILGPSGSGKSTLLMLLTGLLD----PLQGEVTLDGVSVSSLQDE 405 (529)
T ss_pred eEEEEEEEEecCCC--CceeecceEEE--cCCCEEEEECCCCCCHHHHHHHHhcCCC----CCCcEEEECCEEhhhHHHH
Confidence 49999999999753 46999999999 5899999999999999999999999997 99999421
Q ss_pred ---ccceecccccCCCchhHHHHhhCCC------------------------------c--cccccchHHHHHHHHHHHH
Q 003528 78 ---TKGIWMARCAGIEPCTLIMDLEGTD------------------------------G--RERGEDDTAFEKQSALFAL 122 (813)
Q Consensus 78 ---~~g~~~~~~~~~e~~~~vld~~g~~------------------------------~--~e~~~~~~~~erQrv~iA~ 122 (813)
..+++.|+.... ..++.+|..+. . .+++.....+||||++|||
T Consensus 406 lr~~i~~V~Q~~~lF--~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiAR 483 (529)
T TIGR02868 406 LRRRISVFAQDAHLF--DTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALAR 483 (529)
T ss_pred HHhheEEEccCcccc--cccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHH
Confidence 122333322110 11222222111 0 1222233445999999999
Q ss_pred HHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecC
Q 003528 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDK 173 (813)
Q Consensus 123 ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~ 173 (813)
|+. +||||||||++||+++ .+.+.+.+.++. .++|+|+|||++
T Consensus 484 all~~~~iliLDE~TSaLD~~t------e~~I~~~l~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 484 ALLADAPILLLDEPTEHLDAGT------ESELLEDLLAAL--SGKTVVVITHHL 529 (529)
T ss_pred HHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHhc--CCCEEEEEecCC
Confidence 999 9999999999999999 999999999874 378999999985
No 335
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.83 E-value=1.8e-20 Score=188.84 Aligned_cols=148 Identities=13% Similarity=0.065 Sum_probs=105.0
Q ss_pred cceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccce---ecccccCCCchhHHHHhhCC
Q 003528 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI---WMARCAGIEPCTLIMDLEGT 101 (813)
Q Consensus 25 ~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~---~~~~~~~~e~~~~vld~~g~ 101 (813)
..+|+++||++ .+|++++|+||||||||||||+|++ .+|+..- .+. +......+....-.++..++
T Consensus 8 ~~~l~~isl~i--~~G~~~~l~G~nG~GKSTLl~~il~--------~~G~v~~-~~~~~~~~~~~~~~~~q~~~l~~~~L 76 (176)
T cd03238 8 VHNLQNLDVSI--PLNVLVVVTGVSGSGKSTLVNEGLY--------ASGKARL-ISFLPKFSRNKLIFIDQLQFLIDVGL 76 (176)
T ss_pred eeeecceEEEE--cCCCEEEEECCCCCCHHHHHHHHhh--------cCCcEEE-CCcccccccccEEEEhHHHHHHHcCC
Confidence 67899999999 5899999999999999999999963 2354210 000 00000000001223444555
Q ss_pred Cc---cccccchHHHHHHHHHHHHHHH-----hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecC
Q 003528 102 DG---RERGEDDTAFEKQSALFALAVS-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDK 173 (813)
Q Consensus 102 ~~---~e~~~~~~~~erQrv~iA~ALa-----dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~ 173 (813)
.. ..........|+||++||+|++ +++|+||||++||+.. ...+.+.++++.+ .|.|||+|||++
T Consensus 77 ~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~------~~~l~~~l~~~~~-~g~tvIivSH~~ 149 (176)
T cd03238 77 GYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQD------INQLLEVIKGLID-LGNTVILIEHNL 149 (176)
T ss_pred CccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHh-CCCEEEEEeCCH
Confidence 32 2233445567999999999999 6999999999999999 9999999999875 589999999999
Q ss_pred CCcccccCcceeeecCCeE
Q 003528 174 TRTPLENLEPVLREDIQKI 192 (813)
Q Consensus 174 ~~~~~~~~~~vll~~~GkI 192 (813)
+.+. .+++++++ ++|+.
T Consensus 150 ~~~~-~~d~i~~l-~~g~~ 166 (176)
T cd03238 150 DVLS-SADWIIDF-GPGSG 166 (176)
T ss_pred HHHH-hCCEEEEE-CCCCC
Confidence 8764 45555444 33543
No 336
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.83 E-value=1.7e-20 Score=239.57 Aligned_cols=165 Identities=11% Similarity=0.033 Sum_probs=121.5
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-----------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----------- 77 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----------- 77 (813)
.|+++|++++|+......+|+++||++ .+|++++|+||||||||||+++|+|+.. |++|++.-
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i--~~Ge~vaIvG~SGsGKSTLl~lL~gl~~----p~~G~I~i~~g~~i~~~~~ 455 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTL--TEGKTYAFVGESGCGKSTILKLIERLYD----PTEGDIIINDSHNLKDINL 455 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEE--cCCCEEEEECCCCCCHHHHHHHHHHhcc----CCCCeEEEeCCcchhhCCH
Confidence 599999999997522246999999999 5899999999999999999999999997 89998321
Q ss_pred -----ccceecccccCCCchhHHHHhhCCCc-------------------------------------------------
Q 003528 78 -----TKGIWMARCAGIEPCTLIMDLEGTDG------------------------------------------------- 103 (813)
Q Consensus 78 -----~~g~~~~~~~~~e~~~~vld~~g~~~------------------------------------------------- 103 (813)
..+.+.|.. ...+ ..+.+++.+..
T Consensus 456 ~~lr~~Ig~V~Q~~-~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (1466)
T PTZ00265 456 KWWRSKIGVVSQDP-LLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNE 533 (1466)
T ss_pred HHHHHhccEecccc-cchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhh
Confidence 012222221 1111 12333321100
Q ss_pred ----------------------------------------cccccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCch
Q 003528 104 ----------------------------------------RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGRE 140 (813)
Q Consensus 104 ----------------------------------------~e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~ 140 (813)
.+++.....+||||++||||++ +||||||||++||+.
T Consensus 534 ~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~ 613 (1466)
T PTZ00265 534 LIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNK 613 (1466)
T ss_pred hhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence 0111112234999999999999 999999999999999
Q ss_pred hhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeec
Q 003528 141 QAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (813)
Q Consensus 141 ~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~ 188 (813)
. ...|.+.+.++.+..|+|+|+|+|+++.+. .+++++++.+
T Consensus 614 s------e~~i~~~L~~~~~~~g~TvIiIsHrls~i~-~aD~Iivl~~ 654 (1466)
T PTZ00265 614 S------EYLVQKTINNLKGNENRITIIIAHRLSTIR-YANTIFVLSN 654 (1466)
T ss_pred H------HHHHHHHHHHHhhcCCCEEEEEeCCHHHHH-hCCEEEEEeC
Confidence 9 999999999987545899999999998774 4666555554
No 337
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.83 E-value=2.2e-20 Score=240.51 Aligned_cols=179 Identities=14% Similarity=0.096 Sum_probs=133.6
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------ 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------ 76 (813)
.|+++|++++|.++ ...+|+++||++ .+|+.+||+|++|||||||+++|+|+.. |++|++.
T Consensus 1284 ~I~f~nVsf~Y~~~-~~~vL~~is~~I--~~GekiaIVGrTGsGKSTL~~lL~rl~~----~~~G~I~IdG~dI~~i~~~ 1356 (1522)
T TIGR00957 1284 RVEFRNYCLRYRED-LDLVLRHINVTI--HGGEKVGIVGRTGAGKSSLTLGLFRINE----SAEGEIIIDGLNIAKIGLH 1356 (1522)
T ss_pred cEEEEEEEEEeCCC-CcccccceeEEE--cCCCEEEEECCCCCCHHHHHHHHhcCcc----CCCCeEEECCEEccccCHH
Confidence 49999999999752 247999999999 5899999999999999999999999997 8999831
Q ss_pred ---eccceecccccCC-----Cc-----------hhHHHHhh-----------CCCc--cccccchHHHHHHHHHHHHHH
Q 003528 77 ---TTKGIWMARCAGI-----EP-----------CTLIMDLE-----------GTDG--RERGEDDTAFEKQSALFALAV 124 (813)
Q Consensus 77 ---~~~g~~~~~~~~~-----e~-----------~~~vld~~-----------g~~~--~e~~~~~~~~erQrv~iA~AL 124 (813)
...+++.|....+ +| +.-+++.. |++. .+.+.....+||||++||||+
T Consensus 1357 ~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARAL 1436 (1522)
T TIGR00957 1357 DLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARAL 1436 (1522)
T ss_pred HHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHH
Confidence 1222333322110 01 11111111 1111 122333445699999999999
Q ss_pred H---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccc
Q 003528 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (813)
Q Consensus 125 a---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~ 201 (813)
. +||||||||++||.++ -..|.+.+++.++ ++|+|+|+|+++.+.. +|+++ .+++|+|++.|++.++
T Consensus 1437 Lr~~~ILiLDEaTSalD~~T------e~~Iq~~l~~~~~--~~TvI~IAHRl~ti~~-~DrIl-Vld~G~IvE~G~~~eL 1506 (1522)
T TIGR00957 1437 LRKTKILVLDEATAAVDLET------DNLIQSTIRTQFE--DCTVLTIAHRLNTIMD-YTRVI-VLDKGEVAEFGAPSNL 1506 (1522)
T ss_pred HcCCCEEEEECCcccCCHHH------HHHHHHHHHHHcC--CCEEEEEecCHHHHHh-CCEEE-EEECCEEEEECCHHHH
Confidence 9 9999999999999999 8899999988764 7899999999987763 45444 4555999999999887
Q ss_pred cCC
Q 003528 202 HME 204 (813)
Q Consensus 202 ~~~ 204 (813)
+++
T Consensus 1507 l~~ 1509 (1522)
T TIGR00957 1507 LQQ 1509 (1522)
T ss_pred HhC
Confidence 654
No 338
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3.6e-20 Score=189.44 Aligned_cols=178 Identities=19% Similarity=0.176 Sum_probs=129.0
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCee-----------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS----------- 75 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~----------- 75 (813)
|++++|+|+..+-.+. +.+|+++||++ ..|++.+|+||||||||||.++|+|.-. ..+++|++
T Consensus 1 m~~L~I~dLhv~v~~~--keILkgvnL~v--~~GEvhaiMGPNGsGKSTLa~~i~G~p~--Y~Vt~G~I~~~GedI~~l~ 74 (251)
T COG0396 1 MMMLEIKDLHVEVEGK--KEILKGVNLTV--KEGEVHAIMGPNGSGKSTLAYTIMGHPK--YEVTEGEILFDGEDILELS 74 (251)
T ss_pred CceeEEeeeEEEecCc--hhhhcCcceeE--cCCcEEEEECCCCCCHHHHHHHHhCCCC--ceEecceEEECCcccccCC
Confidence 3579999999999762 48999999999 5899999999999999999999999852 23678872
Q ss_pred ---eeccceecccccC-----CCchhHHH------------------------HhhCCCccc--c--ccchHHHHHHHHH
Q 003528 76 ---QTTKGIWMARCAG-----IEPCTLIM------------------------DLEGTDGRE--R--GEDDTAFEKQSAL 119 (813)
Q Consensus 76 ---q~~~g~~~~~~~~-----~e~~~~vl------------------------d~~g~~~~e--~--~~~~~~~erQrv~ 119 (813)
+...|++++.... .....|+. +.++++..- | .+.....||+|.-
T Consensus 75 ~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~E 154 (251)
T COG0396 75 PDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNE 154 (251)
T ss_pred HhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHH
Confidence 1234444333221 11111111 111111100 0 0000112999999
Q ss_pred HHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCccccc-CcceeeecCCeEEEe
Q 003528 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN-LEPVLREDIQKIWDS 195 (813)
Q Consensus 120 iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~-~~~vll~~~GkI~~~ 195 (813)
|+..++ ++.|||||-||||... ++.|-+.+.++..+ |.++|+|||.-....... +.+.++.+ |+|+.+
T Consensus 155 ilQ~~~lePkl~ILDE~DSGLDIda------lk~V~~~i~~lr~~-~~~~liITHy~rll~~i~pD~vhvl~~-GrIv~s 226 (251)
T COG0396 155 ILQLLLLEPKLAILDEPDSGLDIDA------LKIVAEGINALREE-GRGVLIITHYQRLLDYIKPDKVHVLYD-GRIVKS 226 (251)
T ss_pred HHHHHhcCCCEEEecCCCcCccHHH------HHHHHHHHHHHhcC-CCeEEEEecHHHHHhhcCCCEEEEEEC-CEEEec
Confidence 999998 9999999999999999 99999999999876 999999999987766444 44555555 999999
Q ss_pred cCc
Q 003528 196 VPK 198 (813)
Q Consensus 196 g~~ 198 (813)
|.+
T Consensus 227 G~~ 229 (251)
T COG0396 227 GDP 229 (251)
T ss_pred CCH
Confidence 987
No 339
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.83 E-value=1.9e-20 Score=239.34 Aligned_cols=183 Identities=14% Similarity=0.042 Sum_probs=130.4
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---------------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFRE--------------------- 67 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~--------------------- 67 (813)
.|+++|++++|++....++|+++||++ .+|+.++|+||+|||||||+++|.|+..+.
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i--~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~ 1242 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSC--DSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDY 1242 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEE--cCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccc
Confidence 499999999997422257999999999 589999999999999999999999998720
Q ss_pred -----------------------------CCCCCCeee---------------eccceecccccCCCchhHHHHhhCCCc
Q 003528 68 -----------------------------MDAFKGRSQ---------------TTKGIWMARCAGIEPCTLIMDLEGTDG 103 (813)
Q Consensus 68 -----------------------------m~p~sG~~q---------------~~~g~~~~~~~~~e~~~~vld~~g~~~ 103 (813)
..|++|++. ...+++.|.... ...++.+++.+..
T Consensus 1243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~L--F~gTIreNI~~g~ 1320 (1466)
T PTZ00265 1243 QGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPML--FNMSIYENIKFGK 1320 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcc--ccccHHHHHhcCC
Confidence 001466621 112222222211 1122233332211
Q ss_pred --------------------------------cccccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhH
Q 003528 104 --------------------------------RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLL 148 (813)
Q Consensus 104 --------------------------------~e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~ 148 (813)
.+++.....+||||++|||||. +||||||||++||.++ .
T Consensus 1321 ~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~s------E 1394 (1466)
T PTZ00265 1321 EDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS------E 1394 (1466)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH------H
Confidence 1222333345999999999999 9999999999999999 9
Q ss_pred HHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecC----CeEE-EecCcccccC
Q 003528 149 KTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDI----QKIW-DSVPKPQAHM 203 (813)
Q Consensus 149 ~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~----GkI~-~~g~~~e~~~ 203 (813)
+.|.+.+.++....++|+|+|+|.+..+.. ++++++ +++ |+++ +.|+..+++.
T Consensus 1395 ~~I~~~L~~~~~~~~~TvIiIaHRlsti~~-aD~Ivv-l~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1395 KLIEKTIVDIKDKADKTIITIAHRIASIKR-SDKIVV-FNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHHHHHHHhccCCCEEEEEechHHHHHh-CCEEEE-EeCCCCCCCEEEEecCHHHHHh
Confidence 999999998853247899999999987763 555544 455 8855 7999888764
No 340
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.83 E-value=4.9e-21 Score=190.91 Aligned_cols=185 Identities=12% Similarity=0.103 Sum_probs=142.1
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee-----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----------- 76 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----------- 76 (813)
+.+.+.|++.+|++ ..+|+++||++ .+|+.-+||||||+||||+|..|.|..+ |+.|+..
T Consensus 4 ~iL~~~~vsVsF~G---F~Aln~ls~~v--~~Gelr~lIGpNGAGKTT~mD~ItGKtr----p~~G~v~f~g~~dl~~~~ 74 (249)
T COG4674 4 IILYLDGVSVSFGG---FKALNDLSFSV--DPGELRVLIGPNGAGKTTLMDVITGKTR----PQEGEVLFDGDTDLTKLP 74 (249)
T ss_pred ceEEEeceEEEEcc---eeeeeeeEEEe--cCCeEEEEECCCCCCceeeeeeecccCC----CCcceEEEcCchhhccCC
Confidence 47999999999987 78999999999 5899999999999999999999999998 8889831
Q ss_pred ------eccceecccccCCCchhHHHHhhC----------------CCccc--cccchH-----------------HHHH
Q 003528 77 ------TTKGIWMARCAGIEPCTLIMDLEG----------------TDGRE--RGEDDT-----------------AFEK 115 (813)
Q Consensus 77 ------~~~g~~~~~~~~~e~~~~vld~~g----------------~~~~e--~~~~~~-----------------~~er 115 (813)
.-.|.-||.+..+ ....|.+++. ....+ +.+... ..||
T Consensus 75 e~~IAr~GIGRKFQ~PtVf-e~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqK 153 (249)
T COG4674 75 EHRIARAGIGRKFQKPTVF-ENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQK 153 (249)
T ss_pred HHHHHHhccCccccCCeeh-hhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchh
Confidence 1122233333322 2222333321 11111 111111 1299
Q ss_pred HHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeE
Q 003528 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (813)
Q Consensus 116 Qrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI 192 (813)
|++-|++-++ ++|++|||++|+-... ....-++++.++. +.+|++|.|||+++..++.++.++.. |.+
T Consensus 154 QwLEIGMll~Q~P~lLLlDEPvAGMTd~E------t~~taeLl~~la~--~hsilVVEHDM~Fvr~~A~~VTVlh~-G~V 224 (249)
T COG4674 154 QWLEIGMLLAQDPKLLLLDEPVAGMTDAE------TEKTAELLKSLAG--KHSILVVEHDMGFVREIADKVTVLHE-GSV 224 (249)
T ss_pred hhhhhheeeccCCcEEEecCccCCCcHHH------HHHHHHHHHHHhc--CceEEEEeccHHHHHHhhheeEEEec-cce
Confidence 9999999999 9999999999998887 8888999999975 67999999999999988888888887 999
Q ss_pred EEecCcccccCCccchhhh
Q 003528 193 WDSVPKPQAHMETPLSEFF 211 (813)
Q Consensus 193 ~~~g~~~e~~~~~~l~d~f 211 (813)
..+|+..++-.++...+.|
T Consensus 225 L~EGsld~v~~dp~ViEvY 243 (249)
T COG4674 225 LAEGSLDEVQNDPKVIEVY 243 (249)
T ss_pred eecccHHHhhcCcceEeee
Confidence 9999999887776655544
No 341
>PTZ00243 ABC transporter; Provisional
Probab=99.83 E-value=2.5e-20 Score=239.76 Aligned_cols=178 Identities=16% Similarity=0.129 Sum_probs=132.2
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------ 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------ 76 (813)
.|+++|++++|.++ ...+|+|+||++ .+|+.+||+|++|||||||+++|+|+.. |++|++.
T Consensus 1308 ~I~f~nVsf~Y~~~-~~~vL~~vsf~I--~~GekVaIVGrTGSGKSTLl~lLlrl~~----p~~G~I~IDG~di~~i~l~ 1380 (1560)
T PTZ00243 1308 SLVFEGVQMRYREG-LPLVLRGVSFRI--APREKVGIVGRTGSGKSTLLLTFMRMVE----VCGGEIRVNGREIGAYGLR 1380 (1560)
T ss_pred eEEEEEEEEEeCCC-CCceeecceEEE--CCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEECCEEcccCCHH
Confidence 49999999999763 246999999999 5899999999999999999999999997 8999831
Q ss_pred ---eccceecccccCC-----Cc-----------hhHHHHhhCC-----------Cc--cccccchHHHHHHHHHHHHHH
Q 003528 77 ---TTKGIWMARCAGI-----EP-----------CTLIMDLEGT-----------DG--RERGEDDTAFEKQSALFALAV 124 (813)
Q Consensus 77 ---~~~g~~~~~~~~~-----e~-----------~~~vld~~g~-----------~~--~e~~~~~~~~erQrv~iA~AL 124 (813)
...+++.|....+ +| +.-+++..|+ +. .+.+.....+||||++|||||
T Consensus 1381 ~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARAL 1460 (1560)
T PTZ00243 1381 ELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARAL 1460 (1560)
T ss_pred HHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHH
Confidence 1122333322111 01 1111111111 10 122233445699999999999
Q ss_pred H----hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccc
Q 003528 125 S----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (813)
Q Consensus 125 a----dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e 200 (813)
. +||||||||++||+.+ -+.|.+.+.+.++ ++|+|+|+|+++.+.. +|++++ +++|+|++.|++.+
T Consensus 1461 L~~~~~ILlLDEATSaLD~~t------e~~Iq~~L~~~~~--~~TvI~IAHRl~ti~~-~DrIlV-Ld~G~VvE~Gt~~e 1530 (1560)
T PTZ00243 1461 LKKGSGFILMDEATANIDPAL------DRQIQATVMSAFS--AYTVITIAHRLHTVAQ-YDKIIV-MDHGAVAEMGSPRE 1530 (1560)
T ss_pred hcCCCCEEEEeCCCccCCHHH------HHHHHHHHHHHCC--CCEEEEEeccHHHHHh-CCEEEE-EECCEEEEECCHHH
Confidence 9 5999999999999999 8999999998764 6899999999987763 555554 45599999999998
Q ss_pred ccC
Q 003528 201 AHM 203 (813)
Q Consensus 201 ~~~ 203 (813)
++.
T Consensus 1531 Ll~ 1533 (1560)
T PTZ00243 1531 LVM 1533 (1560)
T ss_pred HHh
Confidence 874
No 342
>PLN03073 ABC transporter F family; Provisional
Probab=99.82 E-value=4.3e-20 Score=221.54 Aligned_cols=175 Identities=10% Similarity=0.009 Sum_probs=120.1
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccc
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC 86 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~ 86 (813)
+.+|++.|++++|++ ..+|+++||++ ..|+++||+|||||||||||++|+|..... -|..|++...........
T Consensus 175 ~~~I~i~nls~~y~~---~~ll~~isl~i--~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g-~p~~g~I~~~~Q~~~g~~ 248 (718)
T PLN03073 175 IKDIHMENFSISVGG---RDLIVDASVTL--AFGRHYGLVGRNGTGKTTFLRYMAMHAIDG-IPKNCQILHVEQEVVGDD 248 (718)
T ss_pred ceeEEEceEEEEeCC---CEEEECCEEEE--CCCCEEEEECCCCCCHHHHHHHHcCCCCCC-CCCCCEEEEEeccCCCCC
Confidence 447999999999976 57999999999 589999999999999999999999964211 156666310000000000
Q ss_pred -cCC---------------CchhH------------------------------------------------------HH
Q 003528 87 -AGI---------------EPCTL------------------------------------------------------IM 96 (813)
Q Consensus 87 -~~~---------------e~~~~------------------------------------------------------vl 96 (813)
... ...-+ ++
T Consensus 249 ~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L 328 (718)
T PLN03073 249 TTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASIL 328 (718)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 000 00000 00
Q ss_pred HhhCCCcc---ccccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEe
Q 003528 97 DLEGTDGR---ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVI 170 (813)
Q Consensus 97 d~~g~~~~---e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~Vt 170 (813)
...|+... ........+||||++||++|+ ++|||||||++||+.. ...+.+.+.++ +.|||+||
T Consensus 329 ~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~------~~~l~~~L~~~----~~tviivs 398 (718)
T PLN03073 329 AGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHA------VLWLETYLLKW----PKTFIVVS 398 (718)
T ss_pred HHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH------HHHHHHHHHHc----CCEEEEEE
Confidence 00111100 001112234999999999999 9999999999999999 99999998875 57999999
Q ss_pred ecCCCcccccCcceeeecCCeEE-EecCc
Q 003528 171 RDKTRTPLENLEPVLREDIQKIW-DSVPK 198 (813)
Q Consensus 171 HD~~~~~~~~~~~vll~~~GkI~-~~g~~ 198 (813)
||.+++...+++++++.+ |++. ..|+.
T Consensus 399 Hd~~~l~~~~d~i~~l~~-g~i~~~~g~~ 426 (718)
T PLN03073 399 HAREFLNTVVTDILHLHG-QKLVTYKGDY 426 (718)
T ss_pred CCHHHHHHhCCEEEEEEC-CEEEEeCCCH
Confidence 999988766666666655 9986 45543
No 343
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.82 E-value=3.1e-20 Score=216.55 Aligned_cols=158 Identities=18% Similarity=0.107 Sum_probs=117.1
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------ 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------ 76 (813)
.|+++|++++|++. .+++|+++||++ .+|+.++|+||||||||||+|+|+|+.+ |++|+..
T Consensus 320 ~i~~~~v~f~y~~~-~~~il~~i~l~i--~~G~~~~ivG~sGsGKSTL~~ll~g~~~----~~~G~I~~~g~~i~~~~~~ 392 (529)
T TIGR02857 320 SLEFSGLSVAYPGR-RAPALRPVSFTV--PPGERVALVGPSGAGKSTLLNLLLGFVD----PTEGSIAVNGVPLADADAD 392 (529)
T ss_pred eEEEEEEEEECCCC-CcccccceeEEE--CCCCEEEEECCCCCCHHHHHHHHhcCCC----CCCcEEEECCEehhhCCHH
Confidence 59999999999752 247999999999 5899999999999999999999999997 8999831
Q ss_pred ---eccceecccccCCCchhHHHHhhCCCc--------------------------------cccccchHHHHHHHHHHH
Q 003528 77 ---TTKGIWMARCAGIEPCTLIMDLEGTDG--------------------------------RERGEDDTAFEKQSALFA 121 (813)
Q Consensus 77 ---~~~g~~~~~~~~~e~~~~vld~~g~~~--------------------------------~e~~~~~~~~erQrv~iA 121 (813)
...+...|..... ...+.++..... .+.+.....+||||++||
T Consensus 393 ~lr~~i~~v~Q~~~lf--~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~la 470 (529)
T TIGR02857 393 SWRDQIAWVPQHPFLF--AGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALA 470 (529)
T ss_pred HHHhheEEEcCCCccc--CcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHH
Confidence 1122222222111 112222221110 112222334599999999
Q ss_pred HHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcce
Q 003528 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPV 184 (813)
Q Consensus 122 ~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~v 184 (813)
||+. +++|+||||++||+.+ .+.+++.+.++. .++|+|+|||+++... .+++++
T Consensus 471 Ral~~~~~ililDE~ts~lD~~~------~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~ 527 (529)
T TIGR02857 471 RAFLRDAPLLLLDEPTAHLDAET------EALVTEALRALA--QGRTVLLVTHRLALAE-RADRIV 527 (529)
T ss_pred HHHhcCCCEEEEeCcccccCHHH------HHHHHHHHHHhc--CCCEEEEEecCHHHHH-hCCEEE
Confidence 9999 9999999999999999 999999999885 3789999999997765 344443
No 344
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.81 E-value=1.1e-19 Score=232.05 Aligned_cols=210 Identities=11% Similarity=0.055 Sum_probs=141.6
Q ss_pred cEEEEeeeEEeccc-cccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee-----------
Q 003528 9 STQLIDGDGTFNVS-GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----------- 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~-~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----------- 76 (813)
+++++|+++.|... +.+.+|+++|+.+ .+|++++|+||||||||||||+|+|+.... .+++|+..
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i--~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g-~~~~G~I~i~G~~~~~~~~ 835 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWV--KPGTLTALMGASGAGKTTLLNVLAERVTTG-VITGGDRLVNGRPLDSSFQ 835 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEE--ECCEEEEEECCCCCCHHHHHHHHhCCCCCC-CcceeEEEECCEECChhhh
Confidence 57999999999521 1257999999999 489999999999999999999999998521 14567621
Q ss_pred eccceecccccC------CCchhHHH---------------------HhhCCCcc--cc----ccchHHHHHHHHHHHHH
Q 003528 77 TTKGIWMARCAG------IEPCTLIM---------------------DLEGTDGR--ER----GEDDTAFEKQSALFALA 123 (813)
Q Consensus 77 ~~~g~~~~~~~~------~e~~~~vl---------------------d~~g~~~~--e~----~~~~~~~erQrv~iA~A 123 (813)
...+.+.++... .++..+.. +..|+... .. +.....+||||++||++
T Consensus 836 ~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 836 RSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred cceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHH
Confidence 112333332211 11221111 11121110 00 01233459999999999
Q ss_pred HH---h-HhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCc-ccccCcceeeecCCeEEEecCc
Q 003528 124 VS---D-IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT-PLENLEPVLREDIQKIWDSVPK 198 (813)
Q Consensus 124 La---d-vLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~-~~~~~~~vll~~~GkI~~~g~~ 198 (813)
|+ + ||+|||||+|||+.. ...++++++++.++ |.|||+++|+++.. ...+++.+++.+.|+++..|++
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~------~~~i~~~L~~la~~-g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~ 988 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQT------AWSICKLMRKLADH-GQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDL 988 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHH------HHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCc
Confidence 99 6 899999999999999 99999999999764 89999999999753 2335555555553499999987
Q ss_pred ccccCCccchhhhcccc-cccccchhhHHHHHH
Q 003528 199 PQAHMETPLSEFFNVEV-VALSSFEEKEELFKE 230 (813)
Q Consensus 199 ~e~~~~~~l~d~f~~~~-~~lp~~~~~~e~f~~ 230 (813)
.+. ...+.++|...- ...|...+..|.+.+
T Consensus 989 ~~~--~~~~~~yf~~~G~~~~p~~~NpAd~~ld 1019 (1394)
T TIGR00956 989 GEN--SHTIINYFEKHGAPKCPEDANPAEWMLE 1019 (1394)
T ss_pred ccc--cchHHHHHHhcCCCCCCCCCCHHHHHHH
Confidence 542 234667776543 355666554444443
No 345
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.81 E-value=9.7e-20 Score=233.97 Aligned_cols=177 Identities=15% Similarity=0.089 Sum_probs=130.4
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------ 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------ 76 (813)
.|+++|++++|.++ ...+|+++||++ .+|+.+||+|++|||||||+++|+|+.. .+|++.
T Consensus 1217 ~I~f~nVs~~Y~~~-~~~vL~~is~~I--~~GekvaIvGrSGsGKSTLl~lL~rl~~-----~~G~I~IdG~di~~i~~~ 1288 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEA-GRAVLQDLSFSV--EGGQRVGLLGRTGSGKSTLLSALLRLLS-----TEGEIQIDGVSWNSVTLQ 1288 (1490)
T ss_pred eEEEEEEEEEeCCC-CcceeeccEEEE--cCCCEEEEECCCCCCHHHHHHHHhhhcC-----CCcEEEECCEEcccCCHH
Confidence 59999999999752 368999999999 5899999999999999999999999973 568821
Q ss_pred ---eccceecccccCC-----Cc-----------hhHHHHhhCC-----------Cc--cccccchHHHHHHHHHHHHHH
Q 003528 77 ---TTKGIWMARCAGI-----EP-----------CTLIMDLEGT-----------DG--RERGEDDTAFEKQSALFALAV 124 (813)
Q Consensus 77 ---~~~g~~~~~~~~~-----e~-----------~~~vld~~g~-----------~~--~e~~~~~~~~erQrv~iA~AL 124 (813)
...+++.|....+ +| +.-+++..++ +. .+.+.....+||||++|||||
T Consensus 1289 ~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARAL 1368 (1490)
T TIGR01271 1289 TWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSI 1368 (1490)
T ss_pred HHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHH
Confidence 1112222222111 11 1111111111 10 112223344699999999999
Q ss_pred H---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccc
Q 003528 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (813)
Q Consensus 125 a---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~ 201 (813)
. +||||||||++||+.+ -..|.+.+++.++ ++|||+|+|.++.+.. +++++++ ++|+|++.|++.++
T Consensus 1369 Lr~~~ILlLDEaTS~lD~~T------e~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-~DrIlvL-~~G~ivE~g~p~~L 1438 (1490)
T TIGR01271 1369 LSKAKILLLDEPSAHLDPVT------LQIIRKTLKQSFS--NCTVILSEHRVEALLE-CQQFLVI-EGSSVKQYDSIQKL 1438 (1490)
T ss_pred hCCCCEEEEeCCcccCCHHH------HHHHHHHHHHHcC--CCEEEEEecCHHHHHh-CCEEEEE-ECCEEEEeCCHHHH
Confidence 9 9999999999999999 9999999998764 6899999999987763 5555554 55999999998887
Q ss_pred cC
Q 003528 202 HM 203 (813)
Q Consensus 202 ~~ 203 (813)
++
T Consensus 1439 l~ 1440 (1490)
T TIGR01271 1439 LN 1440 (1490)
T ss_pred Hc
Confidence 64
No 346
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.81 E-value=1.1e-19 Score=202.42 Aligned_cols=182 Identities=15% Similarity=0.128 Sum_probs=135.6
Q ss_pred CCCCccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee-------
Q 003528 4 GEECCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------- 76 (813)
Q Consensus 4 ~~~~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------- 76 (813)
|.+.-.+.++++++-=.+ ..+++++++||++ ..|+.++||||+|||||||.|+|.|..+ |.+|..+
T Consensus 329 P~P~g~L~Ve~l~~~PPg-~~~pil~~isF~l--~~G~~lgIIGPSgSGKSTLaR~lvG~w~----p~~G~VRLDga~l~ 401 (580)
T COG4618 329 PAPQGALSVERLTAAPPG-QKKPILKGISFAL--QAGEALGIIGPSGSGKSTLARLLVGIWP----PTSGSVRLDGADLR 401 (580)
T ss_pred CCCCceeeEeeeeecCCC-CCCcceecceeEe--cCCceEEEECCCCccHHHHHHHHHcccc----cCCCcEEecchhhh
Confidence 344446899999885433 3578999999999 5899999999999999999999999998 9999832
Q ss_pred --------eccceecccccCCCchhHHHHhh------------------------------CCCc--cccccchHHHHHH
Q 003528 77 --------TTKGIWMARCAGIEPCTLIMDLE------------------------------GTDG--RERGEDDTAFEKQ 116 (813)
Q Consensus 77 --------~~~g~~~~~~~~~e~~~~vld~~------------------------------g~~~--~e~~~~~~~~erQ 116 (813)
...|+ +++.....+ -++.+|+ |++. .+.+.....+|||
T Consensus 402 qWd~e~lG~hiGY-LPQdVeLF~-GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQ 479 (580)
T COG4618 402 QWDREQLGRHIGY-LPQDVELFD-GTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQ 479 (580)
T ss_pred cCCHHHhccccCc-CcccceecC-CcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHH
Confidence 11222 222211100 0111111 1111 1222233345999
Q ss_pred HHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEE
Q 003528 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (813)
Q Consensus 117 rv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~ 193 (813)
|+++|||+- .+++||||-++||... -..+.+.+.+++++ |.|+|+|+|.+.... +.|.++++++|++-
T Consensus 480 RIaLARAlYG~P~lvVLDEPNsNLD~~G------E~AL~~Ai~~~k~r-G~~vvviaHRPs~L~--~~Dkilvl~~G~~~ 550 (580)
T COG4618 480 RIALARALYGDPFLVVLDEPNSNLDSEG------EAALAAAILAAKAR-GGTVVVIAHRPSALA--SVDKILVLQDGRIA 550 (580)
T ss_pred HHHHHHHHcCCCcEEEecCCCCCcchhH------HHHHHHHHHHHHHc-CCEEEEEecCHHHHh--hcceeeeecCChHH
Confidence 999999999 9999999999999999 89999999999875 999999999999877 66777777779999
Q ss_pred EecCcccccC
Q 003528 194 DSVPKPQAHM 203 (813)
Q Consensus 194 ~~g~~~e~~~ 203 (813)
..|+.++++.
T Consensus 551 ~FG~r~eVLa 560 (580)
T COG4618 551 AFGPREEVLA 560 (580)
T ss_pred hcCCHHHHHH
Confidence 9999887653
No 347
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.81 E-value=1.7e-19 Score=215.59 Aligned_cols=161 Identities=14% Similarity=0.014 Sum_probs=117.3
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----eccceecc
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----TTKGIWMA 84 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----~~~g~~~~ 84 (813)
+|+++|+++.|+++ ..+|+++||++ .+|++++|+||||||||||+++|+|+.+ |.+|+.. ...+.+.+
T Consensus 451 ~i~~~nv~~~~~~~--~~il~~isl~i--~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~----~~~G~i~~~~~~~i~~v~Q 522 (659)
T TIGR00954 451 GIKFENIPLVTPNG--DVLIESLSFEV--PSGNHLLICGPNGCGKSSLFRILGELWP----VYGGRLTKPAKGKLFYVPQ 522 (659)
T ss_pred eEEEEeeEEECCCC--CeeeecceEEE--CCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCCeEeecCCCcEEEECC
Confidence 69999999999642 57999999999 5899999999999999999999999987 8888732 11233333
Q ss_pred cccCCCchhHHHHhh--------------------------CCCcc-c----------cccchHHHHHHHHHHHHHHH--
Q 003528 85 RCAGIEPCTLIMDLE--------------------------GTDGR-E----------RGEDDTAFEKQSALFALAVS-- 125 (813)
Q Consensus 85 ~~~~~e~~~~vld~~--------------------------g~~~~-e----------~~~~~~~~erQrv~iA~ALa-- 125 (813)
+.. ..+. .+.++. ++... . .......+||||++||+|++
T Consensus 523 ~~~-l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~ 600 (659)
T TIGR00954 523 RPY-MTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHK 600 (659)
T ss_pred CCC-CCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcC
Confidence 321 1111 222221 11100 0 01123345999999999999
Q ss_pred -hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCC
Q 003528 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (813)
Q Consensus 126 -dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~G 190 (813)
+++||||||++||+.. ...+.+.+++ .|.|+|+|||+++.+. .+++++++...|
T Consensus 601 p~illLDEpts~LD~~~------~~~l~~~l~~----~~~tvI~isH~~~~~~-~~d~il~l~~~g 655 (659)
T TIGR00954 601 PQFAILDECTSAVSVDV------EGYMYRLCRE----FGITLFSVSHRKSLWK-YHEYLLYMDGRG 655 (659)
T ss_pred CCEEEEeCCccCCCHHH------HHHHHHHHHH----cCCEEEEEeCchHHHH-hCCEEEEEeCCC
Confidence 9999999999999998 8888888776 2789999999998765 466666554433
No 348
>PLN03232 ABC transporter C family member; Provisional
Probab=99.80 E-value=1.7e-19 Score=231.96 Aligned_cols=180 Identities=17% Similarity=0.141 Sum_probs=128.0
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee---ccceeccc
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---TKGIWMAR 85 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---~~g~~~~~ 85 (813)
.|+++|++++|++....++|+|+||++ .+|+.++|+||+|||||||+++|.|... |.+|.... ..+++.|.
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i--~~Ge~vaIvG~sGSGKSTLl~lLlG~~~----~~~G~i~~~~~~Iayv~Q~ 687 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEI--PVGSLVAIVGGTGEGKTSLISAMLGELS----HAETSSVVIRGSVAYVPQV 687 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEE--cCCCEEEEECCCCCcHHHHHHHHhCCCc----ccCCCEEEecCcEEEEcCc
Confidence 599999999997522257999999999 5899999999999999999999999997 88875322 12222222
Q ss_pred c-----cCCCchhH-----------HHHhhC-------CCc------cccccchHHHHHHHHHHHHHHH---hHhhhccC
Q 003528 86 C-----AGIEPCTL-----------IMDLEG-------TDG------RERGEDDTAFEKQSALFALAVS---DIVLINMW 133 (813)
Q Consensus 86 ~-----~~~e~~~~-----------vld~~g-------~~~------~e~~~~~~~~erQrv~iA~ALa---dvLLLDEP 133 (813)
. +..+|+.+ +++..+ ++. .+++.....+||||++||||+. +|+|||||
T Consensus 688 p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEp 767 (1495)
T PLN03232 688 SWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDP 767 (1495)
T ss_pred cccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1 11222221 111111 110 1233334456999999999999 99999999
Q ss_pred CCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccccC
Q 003528 134 CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (813)
Q Consensus 134 tsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~~ 203 (813)
|++||+.. .+.+++.+.+-.. .++|+|+|||++.... .+++++++ ++|+|+..|+..++..
T Consensus 768 tSaLD~~t------~~~I~~~~l~~~l-~~kT~IlvTH~~~~l~-~aD~Ii~L-~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 768 LSALDAHV------AHQVFDSCMKDEL-KGKTRVLVTNQLHFLP-LMDRIILV-SEGMIKEEGTFAELSK 828 (1495)
T ss_pred ccccCHHH------HHHHHHHHhhhhh-cCCEEEEEECChhhHH-hCCEEEEE-eCCEEEEecCHHHHHh
Confidence 99999998 7777765433222 3789999999998766 35555555 5599999998877653
No 349
>PLN03140 ABC transporter G family member; Provisional
Probab=99.80 E-value=3.7e-19 Score=226.80 Aligned_cols=206 Identities=13% Similarity=0.101 Sum_probs=139.2
Q ss_pred cEEEEeeeEEeccc----------cccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee--
Q 003528 9 STQLIDGDGTFNVS----------GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ-- 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~----------~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q-- 76 (813)
.+..+|+++..... +.+.+|+++|+.+ .+|++++|+||||||||||||+|+|..... +.+|+..
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i--~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g--~~~G~I~in 942 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAF--RPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YIEGDIRIS 942 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEE--ECCeEEEEECCCCCCHHHHHHHHcCCCCCC--cccceEEEC
Confidence 48899999887421 1246999999999 489999999999999999999999986411 2456521
Q ss_pred ----------eccceecccccCCCchhHHHHh----------------------------hCCCcc--cc-----ccchH
Q 003528 77 ----------TTKGIWMARCAGIEPCTLIMDL----------------------------EGTDGR--ER-----GEDDT 111 (813)
Q Consensus 77 ----------~~~g~~~~~~~~~e~~~~vld~----------------------------~g~~~~--e~-----~~~~~ 111 (813)
...|++.+... ..+..++.++ .|+... .. .....
T Consensus 943 G~~~~~~~~~~~igyv~Q~d~-~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LS 1021 (1470)
T PLN03140 943 GFPKKQETFARISGYCEQNDI-HSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLS 1021 (1470)
T ss_pred CccCChHHhhhheEEEccccc-cCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcC
Confidence 11133333221 1111122221 122110 00 01233
Q ss_pred HHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCC-cccccCcceeee
Q 003528 112 AFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR-TPLENLEPVLRE 187 (813)
Q Consensus 112 ~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~-~~~~~~~~vll~ 187 (813)
.+||||++||++|+ ++|+|||||+|||+.. ...+++.++++.++ |.|||+++|+++. +...+++.+++.
T Consensus 1022 gGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~------a~~v~~~L~~l~~~-g~tVI~t~Hq~~~~i~~~~D~vllL~ 1094 (1470)
T PLN03140 1022 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARA------AAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMK 1094 (1470)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHhCCEEEEEc
Confidence 45999999999999 9999999999999999 99999999999865 8999999999974 444455555554
Q ss_pred cCCeEEEecCcccccCCccchhhhccc-c-cccccchhhHHHH
Q 003528 188 DIQKIWDSVPKPQAHMETPLSEFFNVE-V-VALSSFEEKEELF 228 (813)
Q Consensus 188 ~~GkI~~~g~~~e~~~~~~l~d~f~~~-~-~~lp~~~~~~e~f 228 (813)
+.|+++..|++.+ ....+.++|.-- . ...|...+..+-+
T Consensus 1095 ~gG~~v~~G~~~~--~~~~~~~yF~~~~g~~~~p~~~NPAd~~ 1135 (1470)
T PLN03140 1095 RGGQVIYSGPLGR--NSHKIIEYFEAIPGVPKIKEKYNPATWM 1135 (1470)
T ss_pred CCCEEEEECCccc--ccccHHHHHHhcCCCCCCCCCCCchhhh
Confidence 4589999998754 234566777652 2 2345444433333
No 350
>PLN03130 ABC transporter C family member; Provisional
Probab=99.80 E-value=2.3e-19 Score=231.44 Aligned_cols=179 Identities=16% Similarity=0.124 Sum_probs=128.6
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCC-Ceee--eccceeccc
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFK-GRSQ--TTKGIWMAR 85 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~s-G~~q--~~~g~~~~~ 85 (813)
.|+++|+++.|+.....++|+++||++ .+|+.++|+||+|||||||+++|.|... |.+ |+.. ...+++.|.
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i--~~Ge~vaIvG~sGSGKSTLl~lLlG~~~----~~~GG~I~l~~~Iayv~Q~ 687 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDV--PVGSLVAIVGSTGEGKTSLISAMLGELP----PRSDASVVIRGTVAYVPQV 687 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEe--cCCCEEEEECCCCCCHHHHHHHHHHhhc----cCCCceEEEcCeEEEEcCc
Confidence 599999999997422257999999999 5899999999999999999999999997 888 7742 112222221
Q ss_pred -----ccCCCchhHH-----------HHhhC-------CCc------cccccchHHHHHHHHHHHHHHH---hHhhhccC
Q 003528 86 -----CAGIEPCTLI-----------MDLEG-------TDG------RERGEDDTAFEKQSALFALAVS---DIVLINMW 133 (813)
Q Consensus 86 -----~~~~e~~~~v-----------ld~~g-------~~~------~e~~~~~~~~erQrv~iA~ALa---dvLLLDEP 133 (813)
.+..+|+.+. ++..+ ++. .+++.....+||||++||||+. +|+|||||
T Consensus 688 p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEp 767 (1622)
T PLN03130 688 SWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDP 767 (1622)
T ss_pred cccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 1112222221 11111 110 1233334456999999999999 99999999
Q ss_pred CCCCCchhhcChhhHHHHHHH-HHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccccC
Q 003528 134 CHDIGREQAANKPLLKTVFQV-MMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (813)
Q Consensus 134 tsgLD~~~~a~~~l~~~v~el-l~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~~ 203 (813)
|++||+.. .+.+++. +..+. .++|+|+|||++..... +++++++ ++|+|+..|+..++..
T Consensus 768 tSALD~~~------~~~I~~~~l~~~l--~~kTvIlVTH~l~~l~~-aD~Ii~L-~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 768 LSALDAHV------GRQVFDKCIKDEL--RGKTRVLVTNQLHFLSQ-VDRIILV-HEGMIKEEGTYEELSN 828 (1622)
T ss_pred ccccCHHH------HHHHHHHHhhHHh--cCCEEEEEECCHhHHHh-CCEEEEE-eCCEEEEeCCHHHHHh
Confidence 99999998 7777654 44443 37899999999987663 4555554 5599999999877654
No 351
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.80 E-value=3.1e-19 Score=229.95 Aligned_cols=180 Identities=17% Similarity=0.114 Sum_probs=130.7
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee--ccceecccc
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT--TKGIWMARC 86 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~--~~g~~~~~~ 86 (813)
.|+++|+++.|++. ..++|+++||++ .+|++++|+|||||||||||++|+|..+ |.+|+... ..++..|..
T Consensus 636 ~i~~~~~~~~~~~~-~~~~l~~isl~i--~~G~~v~IvG~~GsGKSTLl~~l~g~~~----~~~G~i~~~g~i~yv~Q~~ 708 (1522)
T TIGR00957 636 SITVHNATFTWARD-LPPTLNGITFSI--PEGALVAVVGQVGCGKSSLLSALLAEMD----KVEGHVHMKGSVAYVPQQA 708 (1522)
T ss_pred cEEEEEeEEEcCCC-CCceeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCc----cCCcEEEECCEEEEEcCCc
Confidence 69999999999752 257999999999 5899999999999999999999999997 89998432 122222221
Q ss_pred -----cCCCchhHH-----------HHhhC-------CC------ccccccchHHHHHHHHHHHHHHH---hHhhhccCC
Q 003528 87 -----AGIEPCTLI-----------MDLEG-------TD------GRERGEDDTAFEKQSALFALAVS---DIVLINMWC 134 (813)
Q Consensus 87 -----~~~e~~~~v-----------ld~~g-------~~------~~e~~~~~~~~erQrv~iA~ALa---dvLLLDEPt 134 (813)
+..+|+.+. .+..+ .+ -.+++.....+||||++||||+. +++||||||
T Consensus 709 ~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~ 788 (1522)
T TIGR00957 709 WIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL 788 (1522)
T ss_pred cccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 111122111 11000 00 01222334456999999999999 999999999
Q ss_pred CCCCchhhcChhhHHHHHHHHHHhhc-CCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccccC
Q 003528 135 HDIGREQAANKPLLKTVFQVMMRLFS-PRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (813)
Q Consensus 135 sgLD~~~~a~~~l~~~v~ell~~L~~-~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~~ 203 (813)
++||+.. .+.+++.+.+... ..++|+|+|||+++.+.. +++ ++.+++|+|+..|+..++..
T Consensus 789 saLD~~~------~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~-ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 789 SAVDAHV------GKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDV-IIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred cccCHHH------HHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCE-EEEecCCeEEeeCCHHHHHh
Confidence 9999999 9999998875321 237899999999988774 554 44555699999998877653
No 352
>PRK13409 putative ATPase RIL; Provisional
Probab=99.79 E-value=1.3e-19 Score=213.70 Aligned_cols=156 Identities=16% Similarity=0.119 Sum_probs=111.2
Q ss_pred eeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----------ccce---
Q 003528 15 GDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----------TKGI--- 81 (813)
Q Consensus 15 ls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----------~~g~--- 81 (813)
++++|++. ..+|++++ .+ .+|++++|+||||||||||||+|+|+.. |+.|++.. ..|.
T Consensus 79 ~~~~yg~~--~~~L~~l~-~i--~~Gev~gLvG~NGaGKSTLlkiL~G~l~----p~~G~i~~~~~~~~~~~~~~G~~l~ 149 (590)
T PRK13409 79 PVHRYGVN--GFKLYGLP-IP--KEGKVTGILGPNGIGKTTAVKILSGELI----PNLGDYEEEPSWDEVLKRFRGTELQ 149 (590)
T ss_pred ceEEecCC--ceeEecCC-cC--CCCCEEEEECCCCCCHHHHHHHHhCCcc----CCCccccCCCcHHHHHHHhCChHHH
Confidence 57888752 46899999 77 5899999999999999999999999997 88898520 1110
Q ss_pred --------------ecccccCCCchh---HHHHhh----------------CCCc--cccccchHHHHHHHHHHHHHHH-
Q 003528 82 --------------WMARCAGIEPCT---LIMDLE----------------GTDG--RERGEDDTAFEKQSALFALAVS- 125 (813)
Q Consensus 82 --------------~~~~~~~~e~~~---~vld~~----------------g~~~--~e~~~~~~~~erQrv~iA~ALa- 125 (813)
+..+.....+.. .+.+++ |+.. .........+|+||++||+|++
T Consensus 150 ~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~ 229 (590)
T PRK13409 150 NYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLR 229 (590)
T ss_pred HHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 000000000000 122221 2211 0011122234999999999999
Q ss_pred --hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeee
Q 003528 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE 187 (813)
Q Consensus 126 --dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~ 187 (813)
++|||||||++||+.. ...+.++++++.+ |.|||+||||++.+...+++++++.
T Consensus 230 ~p~lllLDEPts~LD~~~------~~~l~~~i~~l~~--g~tvIivsHd~~~l~~~~D~v~vl~ 285 (590)
T PRK13409 230 DADFYFFDEPTSYLDIRQ------RLNVARLIRELAE--GKYVLVVEHDLAVLDYLADNVHIAY 285 (590)
T ss_pred CCCEEEEECCCCCCCHHH------HHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 9999999999999999 9999999999965 8999999999998876666665554
No 353
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.79 E-value=2e-19 Score=213.59 Aligned_cols=187 Identities=16% Similarity=0.095 Sum_probs=126.1
Q ss_pred cceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------eccceeccccc-----
Q 003528 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------TTKGIWMARCA----- 87 (813)
Q Consensus 25 ~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------~~~g~~~~~~~----- 87 (813)
+.+|+++|+.+ .+|++++|+|||||||||||++|+|...... ..+|+.. ...+...++..
T Consensus 38 ~~iL~~vs~~i--~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~-~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 38 KHLLKNVSGVA--KPGELLAVMGSSGAGKTTLMNALAFRSPKGV-KGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cccccCCEEEE--eCCeEEEEECCCCCCHHHHHHHHhCCCCCCC-cceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 67999999999 5899999999999999999999999876110 1256521 01122222221
Q ss_pred -CCCchhHH---------------------HHhhCCCcc--c-cc-----cchHHHHHHHHHHHHHHH---hHhhhccCC
Q 003528 88 -GIEPCTLI---------------------MDLEGTDGR--E-RG-----EDDTAFEKQSALFALAVS---DIVLINMWC 134 (813)
Q Consensus 88 -~~e~~~~v---------------------ld~~g~~~~--e-~~-----~~~~~~erQrv~iA~ALa---dvLLLDEPt 134 (813)
..+++.+. ++..|+... . .+ .....+||||++||++|+ +++++||||
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 11122111 111122110 0 01 123345999999999999 999999999
Q ss_pred CCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCC-CcccccCcceeeecCCeEEEecCcccccCCccchhhhcc
Q 003528 135 HDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT-RTPLENLEPVLREDIQKIWDSVPKPQAHMETPLSEFFNV 213 (813)
Q Consensus 135 sgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~-~~~~~~~~~vll~~~GkI~~~g~~~e~~~~~~l~d~f~~ 213 (813)
+|||+.. ...+++.++++.++ |+|+|+++|++. .+...+++.+++. +|+++..|++.+. .++|.-
T Consensus 195 sgLD~~~------~~~l~~~L~~l~~~-g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~v~~G~~~~~------~~~f~~ 260 (617)
T TIGR00955 195 SGLDSFM------AYSVVQVLKGLAQK-GKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSPDQA------VPFFSD 260 (617)
T ss_pred cchhHHH------HHHHHHHHHHHHhC-CCEEEEEeCCCCHHHHHHhceEEEee-CCeEEEECCHHHH------HHHHHH
Confidence 9999999 99999999999864 999999999996 5555566665555 5999999988664 344443
Q ss_pred cccccccchhhHHHH
Q 003528 214 EVVALSSFEEKEELF 228 (813)
Q Consensus 214 ~~~~lp~~~~~~e~f 228 (813)
.....|......+.+
T Consensus 261 ~g~~~p~~~n~ad~~ 275 (617)
T TIGR00955 261 LGHPCPENYNPADFY 275 (617)
T ss_pred cCCCCCCCCChHHHH
Confidence 333445444444433
No 354
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.79 E-value=1.9e-19 Score=218.61 Aligned_cols=179 Identities=18% Similarity=0.186 Sum_probs=134.0
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----cc---ce
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----TK---GI 81 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~----~~---g~ 81 (813)
-|+++|+++.|+..+...+|+|+||++ ..|+-+||+||+||||||.+-+|-.... |+.|...- .+ -.
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i--~~GqTvALVG~SGsGKSTvI~LLeRfYd----p~~G~V~IDg~dik~lnl~ 1060 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNLSLSI--RAGQTVALVGPSGSGKSTVISLLERFYD----PDAGKVKIDGVDIKDLNLK 1060 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCCcEEe--cCCCEEEEECCCCCCHHHHHHHHHHhcC----CCCCeEEECCcccccCCHH
Confidence 399999999998655678999999999 5899999999999999999999999985 99998310 00 01
Q ss_pred ecccccC---CCchh---HHHHhhCCCc--------------------------------cccccchHHHHHHHHHHHHH
Q 003528 82 WMARCAG---IEPCT---LIMDLEGTDG--------------------------------RERGEDDTAFEKQSALFALA 123 (813)
Q Consensus 82 ~~~~~~~---~e~~~---~vld~~g~~~--------------------------------~e~~~~~~~~erQrv~iA~A 123 (813)
|+....+ .+|.+ ++.+|..... .+++.....+||||++||||
T Consensus 1061 ~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARA 1140 (1228)
T KOG0055|consen 1061 WLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARA 1140 (1228)
T ss_pred HHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHH
Confidence 1111111 12221 2333332221 11222222349999999999
Q ss_pred HH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccc
Q 003528 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (813)
Q Consensus 124 La---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e 200 (813)
+. +||||||.|++||.++ -+.|-+.|.+... |.|+|+|.|.+..+. ..|.+.+.++|+|++.|+..+
T Consensus 1141 ilRnPkILLLDEATSALDseS------ErvVQeALd~a~~--gRT~IvIAHRLSTIq--naD~I~Vi~~G~VvE~GtH~~ 1210 (1228)
T KOG0055|consen 1141 ILRNPKILLLDEATSALDSES------ERVVQEALDRAME--GRTTIVIAHRLSTIQ--NADVIAVLKNGKVVEQGTHDE 1210 (1228)
T ss_pred HHcCCCeeeeeccchhhhhhh------HHHHHHHHHHhhc--CCcEEEEecchhhhh--cCCEEEEEECCEEEecccHHH
Confidence 99 9999999999999999 8999999998853 899999999999887 455555556699999999888
Q ss_pred ccC
Q 003528 201 AHM 203 (813)
Q Consensus 201 ~~~ 203 (813)
+++
T Consensus 1211 L~~ 1213 (1228)
T KOG0055|consen 1211 LLA 1213 (1228)
T ss_pred HHh
Confidence 764
No 355
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.78 E-value=5.6e-19 Score=184.63 Aligned_cols=78 Identities=12% Similarity=0.047 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHH---h--HhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCccee
Q 003528 111 TAFEKQSALFALAVS---D--IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVL 185 (813)
Q Consensus 111 ~~~erQrv~iA~ALa---d--vLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vl 185 (813)
...|+||++||++++ + +||+||||++||+.. ...+.+.+.++.++ |.|+|+||||++.+. .++++++
T Consensus 139 SgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~------~~~l~~~l~~~~~~-g~tii~itH~~~~~~-~~d~i~~ 210 (226)
T cd03270 139 SGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRD------NDRLIETLKRLRDL-GNTVLVVEHDEDTIR-AADHVID 210 (226)
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHH------HHHHHHHHHHHHhC-CCEEEEEEeCHHHHH-hCCEEEE
Confidence 445999999999999 2 999999999999999 99999999998764 899999999998764 4555555
Q ss_pred ee-----cCCeEEEec
Q 003528 186 RE-----DIQKIWDSV 196 (813)
Q Consensus 186 l~-----~~GkI~~~g 196 (813)
+. ++|+|+++|
T Consensus 211 l~~~~~~~~G~iv~~g 226 (226)
T cd03270 211 IGPGAGVHGGEIVAQG 226 (226)
T ss_pred eCCCccccCCEEEecC
Confidence 51 559998765
No 356
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.78 E-value=4.9e-19 Score=195.09 Aligned_cols=175 Identities=16% Similarity=0.157 Sum_probs=132.2
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCee-------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS------------- 75 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~------------- 75 (813)
.|++.|+++.|+++ +++|+||||++ .+|+.++++||+|+||||+|++|+.... ..+|.+
T Consensus 537 ~i~fsnvtF~Y~p~--k~vl~disF~v--~pGktvAlVG~SGaGKSTimRlLfRffd----v~sGsI~iDgqdIrnvt~~ 608 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPG--KPVLSDISFTV--QPGKTVALVGPSGAGKSTIMRLLFRFFD----VNSGSITIDGQDIRNVTQS 608 (790)
T ss_pred eEEEEEeEEecCCC--CceeecceEEe--cCCcEEEEECCCCCchhHHHHHHHHHhh----ccCceEEEcCchHHHHHHH
Confidence 49999999999885 89999999999 5899999999999999999999999874 778872
Q ss_pred --eeccceecccccCCCchhHHHHhhC--------------------------CC------ccccccchHHHHHHHHHHH
Q 003528 76 --QTTKGIWMARCAGIEPCTLIMDLEG--------------------------TD------GRERGEDDTAFEKQSALFA 121 (813)
Q Consensus 76 --q~~~g~~~~~~~~~e~~~~vld~~g--------------------------~~------~~e~~~~~~~~erQrv~iA 121 (813)
+...|++.|.... .|. +++.+.. .+ -.||+-....+|||||+||
T Consensus 609 SLRs~IGVVPQDtvL-FNd-TI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiA 686 (790)
T KOG0056|consen 609 SLRSSIGVVPQDTVL-FND-TILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIA 686 (790)
T ss_pred HHHHhcCcccCccee-ecc-eeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHH
Confidence 1223443333221 111 1111111 11 1133333334499999999
Q ss_pred HHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCc
Q 003528 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (813)
Q Consensus 122 ~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~ 198 (813)
|++. .+++|||.|++||-.+ -+.|...+.+++. +.|-|+|-|.++.+- ..|.++..++|+|++.|..
T Consensus 687 RtiLK~P~iIlLDEATSALDT~t------ER~IQaaL~rlca--~RTtIVvAHRLSTiv--nAD~ILvi~~G~IvErG~H 756 (790)
T KOG0056|consen 687 RTILKAPSIILLDEATSALDTNT------ERAIQAALARLCA--NRTTIVVAHRLSTIV--NADLILVISNGRIVERGRH 756 (790)
T ss_pred HHHhcCCcEEEEcchhhhcCCcc------HHHHHHHHHHHhc--CCceEEEeeeehhee--cccEEEEEeCCeEeecCcH
Confidence 9999 8999999999999999 9999999999985 678888999997765 4455566666999999998
Q ss_pred ccccC
Q 003528 199 PQAHM 203 (813)
Q Consensus 199 ~e~~~ 203 (813)
++++.
T Consensus 757 eeLl~ 761 (790)
T KOG0056|consen 757 EELLK 761 (790)
T ss_pred HHHHh
Confidence 88753
No 357
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.78 E-value=8.8e-19 Score=207.14 Aligned_cols=205 Identities=18% Similarity=0.171 Sum_probs=142.9
Q ss_pred cEEEEeeeEEeccc--cccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee----------
Q 003528 9 STQLIDGDGTFNVS--GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ---------- 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~--~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q---------- 76 (813)
.+.+.|++..-... ..+.+|++||... .+|++.||+||+|||||||||+|+|...... ..+|+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~--~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~-~~~G~ilvNG~~~~~~~ 101 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTA--KPGELLAIMGPSGSGKTTLLNALAGRLNGGL-KLSGEILLNGRPRDSRS 101 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEE--ecCeEEEEECCCCCCHHHHHHHHhccccCCC-cceEEEEECCccCchhh
Confidence 36677887776542 1478999999999 5899999999999999999999999986321 2456521
Q ss_pred -eccceecccccCCCchhHHHHhh------CCCc----cccccch-------------------------HHHHHHHHHH
Q 003528 77 -TTKGIWMARCAGIEPCTLIMDLE------GTDG----RERGEDD-------------------------TAFEKQSALF 120 (813)
Q Consensus 77 -~~~g~~~~~~~~~e~~~~vld~~------g~~~----~e~~~~~-------------------------~~~erQrv~i 120 (813)
.....+.++.....+.++|.+.. .++. .++.+++ ..+||+||+|
T Consensus 102 ~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsi 181 (613)
T KOG0061|consen 102 FRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSI 181 (613)
T ss_pred hhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHH
Confidence 01112222322233333343322 1221 1111111 1239999999
Q ss_pred HHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCC-CcccccCcceeeecCCeEEEec
Q 003528 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT-RTPLENLEPVLREDIQKIWDSV 196 (813)
Q Consensus 121 A~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~-~~~~~~~~~vll~~~GkI~~~g 196 (813)
|.-+. .||++||||+|||... ...+++++++++++ |+|||+++|.+. .+-...++.+++.. |+++..|
T Consensus 182 a~Ell~~P~iLflDEPTSGLDS~s------A~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~G 253 (613)
T KOG0061|consen 182 ALELLTDPSILFLDEPTSGLDSFS------ALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSE-GEVVYSG 253 (613)
T ss_pred HHHHHcCCCEEEecCCCCCcchhh------HHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEec
Confidence 99999 9999999999999999 99999999999998 999999999995 44434455555554 9999999
Q ss_pred CcccccCCccchhhhcccccccccchhhHHHHHH
Q 003528 197 PKPQAHMETPLSEFFNVEVVALSSFEEKEELFKE 230 (813)
Q Consensus 197 ~~~e~~~~~~l~d~f~~~~~~lp~~~~~~e~f~~ 230 (813)
++.+ +.++|..--...|.+.+..|.+.+
T Consensus 254 ~~~~------~~~ff~~~G~~~P~~~Npadf~l~ 281 (613)
T KOG0061|consen 254 SPRE------LLEFFSSLGFPCPELENPADFLLD 281 (613)
T ss_pred CHHH------HHHHHHhCCCCCCCcCChHHHHHH
Confidence 8865 445665554556666666666554
No 358
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.78 E-value=5.9e-19 Score=204.08 Aligned_cols=164 Identities=18% Similarity=0.220 Sum_probs=121.2
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeec----ccee
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT----KGIW 82 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~----~g~~ 82 (813)
...++++|+++.|+++ +.+++++||.+ .+|+.++|+||||+|||||||+|.|... |.+|.+... .|++
T Consensus 319 ~~vl~~~~~~~~y~~~--~~l~~~~s~~i--~~g~riaiiG~NG~GKSTLlk~l~g~~~----~~~G~v~~g~~v~igyf 390 (530)
T COG0488 319 KLVLEFENVSKGYDGG--RLLLKDLSFRI--DRGDRIAIVGPNGAGKSTLLKLLAGELG----PLSGTVKVGETVKIGYF 390 (530)
T ss_pred CeeEEEeccccccCCC--ceeecCceEEe--cCCCEEEEECCCCCCHHHHHHHHhhhcc----cCCceEEeCCceEEEEE
Confidence 3479999999999763 68999999999 5899999999999999999999999987 788974322 2333
Q ss_pred cccccCCCchhHHHHhhC-------------------CCcccc---ccchHHHHHHHHHHHHHHH---hHhhhccCCCCC
Q 003528 83 MARCAGIEPCTLIMDLEG-------------------TDGRER---GEDDTAFEKQSALFALAVS---DIVLINMWCHDI 137 (813)
Q Consensus 83 ~~~~~~~e~~~~vld~~g-------------------~~~~e~---~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgL 137 (813)
-|......+...+++... +.+... ......+||.|+.||+.+. .+|||||||+.|
T Consensus 391 ~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhL 470 (530)
T COG0488 391 DQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHL 470 (530)
T ss_pred EehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccC
Confidence 333322222223333321 111111 1111224999999999999 999999999999
Q ss_pred CchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeec
Q 003528 138 GREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (813)
Q Consensus 138 D~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~ 188 (813)
|..+ +..+-+.|... .-|||+||||..++...+.+++.+.+
T Consensus 471 Di~s------~~aLe~aL~~f----~Gtvl~VSHDr~Fl~~va~~i~~~~~ 511 (530)
T COG0488 471 DIES------LEALEEALLDF----EGTVLLVSHDRYFLDRVATRIWLVED 511 (530)
T ss_pred CHHH------HHHHHHHHHhC----CCeEEEEeCCHHHHHhhcceEEEEcC
Confidence 9999 88888888775 44999999999999877766555554
No 359
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.76 E-value=1.2e-18 Score=222.41 Aligned_cols=168 Identities=12% Similarity=-0.070 Sum_probs=117.3
Q ss_pred cceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee-----------c---cceeccccc---
Q 003528 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT-----------T---KGIWMARCA--- 87 (813)
Q Consensus 25 ~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~-----------~---~g~~~~~~~--- 87 (813)
+.+|+++|+.+ .+|++++|+||||||||||||+|+|+......|.+|++.- . .+...+...
T Consensus 74 ~~iL~~vs~~i--~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 74 FDILKPMDGLI--KPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred ceeeeCCEEEE--ECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 46899999999 4899999999999999999999999863111257787310 0 112222211
Q ss_pred ---CCCchhHHHH--------------------------hhCCCccc-------cccchHHHHHHHHHHHHHHH---hHh
Q 003528 88 ---GIEPCTLIMD--------------------------LEGTDGRE-------RGEDDTAFEKQSALFALAVS---DIV 128 (813)
Q Consensus 88 ---~~e~~~~vld--------------------------~~g~~~~e-------~~~~~~~~erQrv~iA~ALa---dvL 128 (813)
..+++.+... ..|+.... .......+|||||+||++|+ +|+
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 1111222111 11221100 00112223999999999999 999
Q ss_pred hhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecC-CCcccccCcceeeecCCeEEEecCcccc
Q 003528 129 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDK-TRTPLENLEPVLREDIQKIWDSVPKPQA 201 (813)
Q Consensus 129 LLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~-~~~~~~~~~~vll~~~GkI~~~g~~~e~ 201 (813)
++||||+|||+.. ...+++.++++.++.|+|+|+++|++ +.+...+++++++.+ |+++..|++.+.
T Consensus 232 llDEPTsgLD~~~------~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~~~~ 298 (1394)
T TIGR00956 232 CWDNATRGLDSAT------ALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGPADKA 298 (1394)
T ss_pred EEeCCCCCcCHHH------HHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeC-CeEEEECCHHHH
Confidence 9999999999999 99999999999876689999999998 455555566555555 999999987654
No 360
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.76 E-value=2.7e-18 Score=220.69 Aligned_cols=163 Identities=14% Similarity=0.095 Sum_probs=116.9
Q ss_pred cceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeec--cceecccc-----cCCCchhHHH-
Q 003528 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT--KGIWMARC-----AGIEPCTLIM- 96 (813)
Q Consensus 25 ~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~--~g~~~~~~-----~~~e~~~~vl- 96 (813)
+++|+++||++ .+|++++|+|||||||||||++|+|+.+ |.+|++... .++..+.. +..+|+.+..
T Consensus 439 ~~~l~~i~l~i--~~G~~~~I~G~~GsGKSTLl~~l~G~~~----~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~ 512 (1490)
T TIGR01271 439 TPVLKNISFKL--EKGQLLAVAGSTGSGKSSLLMMIMGELE----PSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLS 512 (1490)
T ss_pred CcceeeeEEEE--CCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCEEEEEeCCCccCCccHHHHHHhccc
Confidence 35899999999 5899999999999999999999999998 899984321 12222221 1122222110
Q ss_pred ----------HhhCC-------C------ccccccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHH
Q 003528 97 ----------DLEGT-------D------GRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKT 150 (813)
Q Consensus 97 ----------d~~g~-------~------~~e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~ 150 (813)
+..++ + -.+++.....+||||++||||+. +++|||||+++||+.. .+.
T Consensus 513 ~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~------~~~ 586 (1490)
T TIGR01271 513 YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVT------EKE 586 (1490)
T ss_pred cchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH------HHH
Confidence 00000 0 00122233445999999999999 9999999999999999 999
Q ss_pred HHHH-HHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccccC
Q 003528 151 VFQV-MMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (813)
Q Consensus 151 v~el-l~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~~ 203 (813)
+++. +..+. .|+|+|+|||+++.+.. ++ .++++++|+|+..|+..++..
T Consensus 587 i~~~~l~~~~--~~~tvilvtH~~~~~~~-ad-~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 587 IFESCLCKLM--SNKTRILVTSKLEHLKK-AD-KILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHHHHHHh--cCCeEEEEeCChHHHHh-CC-EEEEEECCEEEEEcCHHHHHh
Confidence 9975 55654 38999999999988763 54 455555699999998777653
No 361
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.75 E-value=7.5e-19 Score=171.87 Aligned_cols=162 Identities=19% Similarity=0.228 Sum_probs=114.7
Q ss_pred ccEEEEeeeEEec----cccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee-ecccee
Q 003528 8 CSTQLIDGDGTFN----VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ-TTKGIW 82 (813)
Q Consensus 8 ~~Iel~dls~~y~----~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q-~~~g~~ 82 (813)
.+|++.|++|+|. ++..-++++++||++ ..|+|+++=||+||||||||++|.|-.. |++|++. ...|.|
T Consensus 3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV--~aGECvvL~G~SG~GKStllr~LYaNY~----~d~G~I~v~H~g~~ 76 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSV--NAGECVVLHGPSGSGKSTLLRSLYANYL----PDEGQILVRHEGEW 76 (235)
T ss_pred ceeeeecchhheEeeecCCEEeeeeeceeEEe--cCccEEEeeCCCCCcHHHHHHHHHhccC----CCCceEEEEeCcch
Confidence 3699999999994 212357999999999 4799999999999999999999999987 9999832 112222
Q ss_pred cccccC---------------------CCchhHHHHh-------hCCCccccccchH---------------------HH
Q 003528 83 MARCAG---------------------IEPCTLIMDL-------EGTDGRERGEDDT---------------------AF 113 (813)
Q Consensus 83 ~~~~~~---------------------~e~~~~vld~-------~g~~~~e~~~~~~---------------------~~ 113 (813)
..-... .-+..-.+|+ .|.+......... .+
T Consensus 77 vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGG 156 (235)
T COG4778 77 VDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGG 156 (235)
T ss_pred hhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCc
Confidence 211100 0011111121 1222211111100 12
Q ss_pred HHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCc
Q 003528 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (813)
Q Consensus 114 erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~ 182 (813)
|+|||.||++++ .||||||||+.||..+ +..+.+++.+-+. +|..+|=|-||.+.-...+++
T Consensus 157 EqQRVNIaRgfivd~pILLLDEPTasLDa~N------r~vVveli~e~Ka-~GaAlvGIFHDeevre~vadR 221 (235)
T COG4778 157 EQQRVNIARGFIVDYPILLLDEPTASLDATN------RAVVVELIREAKA-RGAALVGIFHDEEVREAVADR 221 (235)
T ss_pred hheehhhhhhhhccCceEEecCCcccccccc------hHHHHHHHHHHHh-cCceEEEeeccHHHHHHHhhh
Confidence 999999999999 9999999999999999 9999999998765 599999999998754433443
No 362
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=3.3e-18 Score=170.28 Aligned_cols=152 Identities=13% Similarity=0.139 Sum_probs=110.1
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeec-------cc-
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT-------KG- 80 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~-------~g- 80 (813)
+++.+|++.+-+. ..++.++||++ ..|+++-|.|||||||||||++|+|+.. |.+|++.-. ..
T Consensus 2 ~L~a~~L~~~R~e---~~lf~~L~f~l--~~Ge~~~i~G~NG~GKTtLLRilaGLl~----p~~G~v~~~~~~i~~~~~~ 72 (209)
T COG4133 2 MLEAENLSCERGE---RTLFSDLSFTL--NAGEALQITGPNGAGKTTLLRILAGLLR----PDAGEVYWQGEPIQNVRES 72 (209)
T ss_pred cchhhhhhhccCc---ceeecceeEEE--cCCCEEEEECCCCCcHHHHHHHHHcccC----CCCCeEEecCCCCccchhh
Confidence 5778888888765 78999999999 5899999999999999999999999998 999993211 10
Q ss_pred -----eecccccC-------CCchhHHHHhhCCCccccc-c----------------chHHHHHHHHHHHHHHH---hHh
Q 003528 81 -----IWMARCAG-------IEPCTLIMDLEGTDGRERG-E----------------DDTAFEKQSALFALAVS---DIV 128 (813)
Q Consensus 81 -----~~~~~~~~-------~e~~~~vld~~g~~~~e~~-~----------------~~~~~erQrv~iA~ALa---dvL 128 (813)
.|+.+..+ .+|..|..++.|....... + .....||+||++|+-.+ ++-
T Consensus 73 ~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLW 152 (209)
T COG4133 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLW 152 (209)
T ss_pred HHHHHHHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCce
Confidence 13333333 3444444444443111110 0 11223999999999988 999
Q ss_pred hhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCc
Q 003528 129 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 176 (813)
Q Consensus 129 LLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~ 176 (813)
|||||+++||..+ ...+-.++..-.. .|-.||.+||+.--+
T Consensus 153 iLDEP~taLDk~g------~a~l~~l~~~H~~-~GGiVllttHq~l~~ 193 (209)
T COG4133 153 ILDEPFTALDKEG------VALLTALMAAHAA-QGGIVLLTTHQPLPI 193 (209)
T ss_pred eecCcccccCHHH------HHHHHHHHHHHhc-CCCEEEEecCCccCC
Confidence 9999999999997 6666666665554 477899999988433
No 363
>PLN03140 ABC transporter G family member; Provisional
Probab=99.75 E-value=1.3e-18 Score=221.97 Aligned_cols=164 Identities=15% Similarity=0.095 Sum_probs=118.1
Q ss_pred cceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCC---CCeee------------eccceeccccc--
Q 003528 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF---KGRSQ------------TTKGIWMARCA-- 87 (813)
Q Consensus 25 ~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~---sG~~q------------~~~g~~~~~~~-- 87 (813)
+.+|+++|+.+ .+|++++|+||||||||||||+|+|... |. +|++. ...++..+...
T Consensus 178 ~~IL~~vs~~i--~~Ge~~~llGpnGSGKSTLLk~LaG~l~----~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~ 251 (1470)
T PLN03140 178 LTILKDASGII--KPSRMTLLLGPPSSGKTTLLLALAGKLD----PSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHV 251 (1470)
T ss_pred ceeccCCeEEE--eCCeEEEEEcCCCCCHHHHHHHHhCCCC----CCCcceeEEEECCEechhhcccceeEEecccccCC
Confidence 56999999999 5899999999999999999999999986 55 67721 11122222211
Q ss_pred ----CCCchhHHHHh----------------------------------------------------hCCCc-------c
Q 003528 88 ----GIEPCTLIMDL----------------------------------------------------EGTDG-------R 104 (813)
Q Consensus 88 ----~~e~~~~vld~----------------------------------------------------~g~~~-------~ 104 (813)
+.++..+.... .|+.. .
T Consensus 252 ~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~ 331 (1470)
T PLN03140 252 GVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGD 331 (1470)
T ss_pred CcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCC
Confidence 11222222111 12211 0
Q ss_pred ccccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecC-CCccccc
Q 003528 105 ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDK-TRTPLEN 180 (813)
Q Consensus 105 e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~-~~~~~~~ 180 (813)
........+|||||.||++++ +++++||||+|||+.. ...+++.++++.+..|+|+|+++|++ ..+...+
T Consensus 332 ~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t------~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lf 405 (1470)
T PLN03140 332 EMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST------TYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLF 405 (1470)
T ss_pred ccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHH------HHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHh
Confidence 000112223999999999999 9999999999999999 99999999999765689999999998 4565556
Q ss_pred CcceeeecCCeEEEecCcccc
Q 003528 181 LEPVLREDIQKIWDSVPKPQA 201 (813)
Q Consensus 181 ~~~vll~~~GkI~~~g~~~e~ 201 (813)
++++++.+ |+++..|+..++
T Consensus 406 D~vilL~~-G~ivy~G~~~~~ 425 (1470)
T PLN03140 406 DDIILLSE-GQIVYQGPRDHI 425 (1470)
T ss_pred heEEEeeC-ceEEEeCCHHHH
Confidence 66665555 999999987664
No 364
>PTZ00243 ABC transporter; Provisional
Probab=99.74 E-value=4.4e-18 Score=219.20 Aligned_cols=163 Identities=17% Similarity=0.043 Sum_probs=116.1
Q ss_pred cceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee--ccceecccccCCCchhHHHHhhCCC
Q 003528 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT--TKGIWMARCAGIEPCTLIMDLEGTD 102 (813)
Q Consensus 25 ~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~--~~g~~~~~~~~~e~~~~vld~~g~~ 102 (813)
+.+|+++||++ .+|++++|+|||||||||||++|+|+.. |++|+... ..++..+... .. ...+.++....
T Consensus 673 ~~iL~~isl~i--~~G~~~~IiG~nGsGKSTLL~~i~G~~~----~~~G~i~~~~~i~yv~Q~~~-l~-~~Tv~enI~~~ 744 (1560)
T PTZ00243 673 KVLLRDVSVSV--PRGKLTVVLGATGSGKSTLLQSLLSQFE----ISEGRVWAERSIAYVPQQAW-IM-NATVRGNILFF 744 (1560)
T ss_pred ceeEeeeEEEE--CCCCEEEEECCCCCcHHHHHHHHhcCCC----CCCcEEEECCeEEEEeCCCc-cC-CCcHHHHHHcC
Confidence 56899999999 5899999999999999999999999997 88998432 2233333221 11 11222222110
Q ss_pred -------------------------------ccccccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhH
Q 003528 103 -------------------------------GRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLL 148 (813)
Q Consensus 103 -------------------------------~~e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~ 148 (813)
-.+++.....+||||++||||+. +++|||||+++||+.. .
T Consensus 745 ~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~------~ 818 (1560)
T PTZ00243 745 DEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHV------G 818 (1560)
T ss_pred ChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH------H
Confidence 01122233345999999999999 9999999999999998 7
Q ss_pred HHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccccCC
Q 003528 149 KTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHME 204 (813)
Q Consensus 149 ~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~~~ 204 (813)
+.+++.+..... .|+|+|+|||+++.+. .+++++ .+++|+|...|+..+.+..
T Consensus 819 ~~i~~~~~~~~~-~~~TvIlvTH~~~~~~-~ad~ii-~l~~G~i~~~G~~~~l~~~ 871 (1560)
T PTZ00243 819 ERVVEECFLGAL-AGKTRVLATHQVHVVP-RADYVV-ALGDGRVEFSGSSADFMRT 871 (1560)
T ss_pred HHHHHHHHHHhh-CCCEEEEEeCCHHHHH-hCCEEE-EEECCEEEEecCHHHHHhC
Confidence 788764432222 3899999999998876 355444 4555999999988776543
No 365
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.73 E-value=1.3e-17 Score=206.83 Aligned_cols=179 Identities=16% Similarity=0.158 Sum_probs=135.8
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------ 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------ 76 (813)
.|+++|++.+|.++ ...+|++|||.+ .+|+.|||+|+.|||||||+++||.+.. |.+|++.
T Consensus 1138 ~I~f~~~~~RYrp~-lp~VLk~is~~I--~p~eKVGIVGRTGaGKSSL~~aLFRl~e----~~~G~I~IDgvdI~~igL~ 1210 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPN-LPLVLKGISFTI--KPGEKVGIVGRTGAGKSSLILALFRLVE----PAEGEILIDGVDISKIGLH 1210 (1381)
T ss_pred eEEEEEeEEEeCCC-CcchhcCceEEE--cCCceEEEeCCCCCCHHHHHHHHHHhcC----ccCCeEEEcCeecccccHH
Confidence 49999999999873 578999999999 5799999999999999999999999997 8899831
Q ss_pred ---eccceecccccC--------CCc--------hhHHHHhh-----------CCCc--cccccchHHHHHHHHHHHHHH
Q 003528 77 ---TTKGIWMARCAG--------IEP--------CTLIMDLE-----------GTDG--RERGEDDTAFEKQSALFALAV 124 (813)
Q Consensus 77 ---~~~g~~~~~~~~--------~e~--------~~~vld~~-----------g~~~--~e~~~~~~~~erQrv~iA~AL 124 (813)
...++..|.+.. .+| +-..++.. |++. .|.++....+|||.+++||||
T Consensus 1211 dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARAL 1290 (1381)
T KOG0054|consen 1211 DLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARAL 1290 (1381)
T ss_pred HHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHH
Confidence 112233332211 111 11111111 2221 133444455699999999999
Q ss_pred H---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccc
Q 003528 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (813)
Q Consensus 125 a---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~ 201 (813)
. +||+|||.|+++|+.+ =..|.+.+++-++ ++|||.|-|.+..+.. + |+++++|.|+|++.++|.++
T Consensus 1291 Lr~skILvLDEATAsVD~~T------D~lIQ~tIR~~F~--dcTVltIAHRl~TVmd-~-DrVlVld~G~v~EfdsP~~L 1360 (1381)
T KOG0054|consen 1291 LRKSKILVLDEATASVDPET------DALIQKTIREEFK--DCTVLTIAHRLNTVMD-S-DRVLVLDAGRVVEFDSPAEL 1360 (1381)
T ss_pred hccCCEEEEecccccCChHH------HHHHHHHHHHHhc--CCeEEEEeeccchhhh-c-CeEEEeeCCeEeecCChHHH
Confidence 9 9999999999999998 7788888999886 6999999999987762 4 45555566999999999988
Q ss_pred cCC
Q 003528 202 HME 204 (813)
Q Consensus 202 ~~~ 204 (813)
+++
T Consensus 1361 l~~ 1363 (1381)
T KOG0054|consen 1361 LSD 1363 (1381)
T ss_pred HhC
Confidence 754
No 366
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.73 E-value=4.8e-18 Score=208.71 Aligned_cols=177 Identities=11% Similarity=0.156 Sum_probs=137.8
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---------- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---------- 77 (813)
..+.+.++++.|+.. ..+++++++.+ .+|++.|++|+|||||||++|+|.|..+ |++|+..-
T Consensus 563 ~~~~~~~L~k~y~~~--~~Av~~ls~~V--~~gecfgLLG~NGAGKtT~f~mltG~~~----~t~G~a~i~g~~i~~~~~ 634 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGK--DGAVRGLSFAV--PPGECFGLLGVNGAGKTTTFKMLTGETK----PTSGEALIKGHDITVSTD 634 (885)
T ss_pred ceEEEcceeeeecch--hhhhcceEEEe--cCCceEEEecCCCCCchhhHHHHhCCcc----CCcceEEEecCccccccc
Confidence 468999999999873 22999999999 5899999999999999999999999998 99998211
Q ss_pred ------ccceecccccC-------CCchhHHHHhhCCCccccccchH--------------------HHHHHHHHHHHHH
Q 003528 78 ------TKGIWMARCAG-------IEPCTLIMDLEGTDGRERGEDDT--------------------AFEKQSALFALAV 124 (813)
Q Consensus 78 ------~~g~~~~~~~~-------~e~~~~vld~~g~~~~e~~~~~~--------------------~~erQrv~iA~AL 124 (813)
..| +.++... .+...+...+.|++..+...... .++|+|+.+|.|+
T Consensus 635 ~~~~~~~iG-yCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aial 713 (885)
T KOG0059|consen 635 FQQVRKQLG-YCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIAL 713 (885)
T ss_pred hhhhhhhcc-cCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHH
Confidence 011 1222211 22222333333544322111111 1299999999999
Q ss_pred H---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccc
Q 003528 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (813)
Q Consensus 125 a---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~ 201 (813)
+ ++++||||++|+||.. ++.+.+++.++++. |..+|++||.++++...|++..+|.+ |+++.-|++.++
T Consensus 714 ig~p~vi~LDEPstGmDP~a------rr~lW~ii~~~~k~-g~aiiLTSHsMeE~EaLCtR~aImv~-G~l~ciGs~q~L 785 (885)
T KOG0059|consen 714 IGDPSVILLDEPSTGLDPKA------RRHLWDIIARLRKN-GKAIILTSHSMEEAEALCTRTAIMVI-GQLRCIGSPQEL 785 (885)
T ss_pred hcCCCEEEecCCCCCCCHHH------HHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHHhhhhheeec-CeeEEecChHHH
Confidence 9 9999999999999999 99999999999875 55999999999999888998888888 999999998764
No 367
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.72 E-value=1.4e-18 Score=170.72 Aligned_cols=188 Identities=15% Similarity=0.134 Sum_probs=132.6
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeecc--------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~-------- 79 (813)
++++++|+...- -|-.+|.++ ..|+++-+||||||||||||-.++|+. |.+|.++...
T Consensus 2 ~l~qln~v~~~t-------RL~plS~qv--~aGe~~HliGPNGaGKSTLLA~lAGm~-----~~sGsi~~~G~~l~~~~~ 67 (248)
T COG4138 2 ILMQLNDVAEST-------RLGPLSGEV--RAGEILHLVGPNGAGKSTLLARMAGMT-----SGSGSIQFAGQPLEAWSA 67 (248)
T ss_pred ceeeeccccccc-------ccccccccc--ccceEEEEECCCCccHHHHHHHHhCCC-----CCCceEEECCcchhHHhH
Confidence 468888886643 244457777 589999999999999999999999998 5678743110
Q ss_pred ------ceecccccCCCchhHHHHh--------------------hCCCccc-c-ccchHHHHHHHHHHHHHHH------
Q 003528 80 ------GIWMARCAGIEPCTLIMDL--------------------EGTDGRE-R-GEDDTAFEKQSALFALAVS------ 125 (813)
Q Consensus 80 ------g~~~~~~~~~e~~~~vld~--------------------~g~~~~e-~-~~~~~~~erQrv~iA~ALa------ 125 (813)
..|+.+.......+-|..+ .+++..- | ......+|-|||-+|....
T Consensus 68 ~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~ 147 (248)
T COG4138 68 TELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDA 147 (248)
T ss_pred hHHHHHHHHHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCC
Confidence 0111111111111111111 1221110 0 0011123889999987766
Q ss_pred ----hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCcccc
Q 003528 126 ----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (813)
Q Consensus 126 ----dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~ 201 (813)
++||+|||.++||..+ ...+-.++.++++. |.+|||++||++.+.+.+++..++.. |++...|..+++
T Consensus 148 NP~~~LLllDEP~~~LDvAQ------~~aLdrll~~~c~~-G~~vims~HDLNhTLrhA~~~wLL~r-G~l~~~G~~~eV 219 (248)
T COG4138 148 NPAGQLLLLDEPMNSLDVAQ------QSALDRLLSALCQQ-GLAIVMSSHDLNHTLRHAHRAWLLKR-GKLLASGRREEV 219 (248)
T ss_pred CccceeEEecCCCcchhHHH------HHHHHHHHHHHHhC-CcEEEEeccchhhHHHHHHHHHHHhc-CeEEeecchhhh
Confidence 8999999999999998 77777888888875 99999999999988776666655555 999999999999
Q ss_pred cCCccchhhhcccccc
Q 003528 202 HMETPLSEFFNVEVVA 217 (813)
Q Consensus 202 ~~~~~l~d~f~~~~~~ 217 (813)
+....+...|+..|..
T Consensus 220 lt~~vL~q~fg~~frr 235 (248)
T COG4138 220 LTPPVLAQAYGMNFRR 235 (248)
T ss_pred cChHHHHHHhccceEE
Confidence 9999999999987754
No 368
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.71 E-value=3.3e-17 Score=157.53 Aligned_cols=156 Identities=16% Similarity=0.157 Sum_probs=111.1
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCee-------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS------------- 75 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~------------- 75 (813)
++.++|++.+.++ ...|-++||+| .+|+|+.|+||+||||||||.-+.|.+....+ .+|+.
T Consensus 2 ~l~l~nvsl~l~g---~cLLa~~n~Ti--a~GeivtlMGPSGcGKSTLls~~~G~La~~F~-~~G~~~l~~~~l~~lPa~ 75 (213)
T COG4136 2 MLCLKNVSLRLPG---SCLLANVNFTI--AKGEIVTLMGPSGCGKSTLLSWMIGALAGQFS-CTGELWLNEQRLDMLPAA 75 (213)
T ss_pred ceeeeeeeecCCC---ceEEEeeeEEe--cCCcEEEEECCCCccHHHHHHHHHhhcccCcc-eeeEEEECCeeccccchh
Confidence 5889999988766 78999999999 48999999999999999999999998763322 35661
Q ss_pred eeccceeccccc------CCCchhHHHHhhCCCccccccc--------------------hHHHHHHHHHHHHHHH---h
Q 003528 76 QTTKGIWMARCA------GIEPCTLIMDLEGTDGRERGED--------------------DTAFEKQSALFALAVS---D 126 (813)
Q Consensus 76 q~~~g~~~~~~~------~~e~~~~vld~~g~~~~e~~~~--------------------~~~~erQrv~iA~ALa---d 126 (813)
|...|+.++..- ...|..|.+-. .+.++.|... ....||-||++-|+|. +
T Consensus 76 qRq~GiLFQD~lLFphlsVg~Nl~fAlp~-~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk 154 (213)
T COG4136 76 QRQIGILFQDALLFPHLSVGQNLLFALPA-TLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPK 154 (213)
T ss_pred hhheeeeecccccccccccccceEEecCc-ccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcc
Confidence 344566665432 22233222110 0111111111 1112999999999999 9
Q ss_pred HhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcc
Q 003528 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (813)
Q Consensus 127 vLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~ 177 (813)
.++||||++.||..- +..+.+....-.+..|...|.||||+..++
T Consensus 155 ~lLLDEPFS~LD~AL------R~qfR~wVFs~~r~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 155 ALLLDEPFSRLDVAL------RDQFRQWVFSEVRAAGIPTVQVTHDLQDVP 199 (213)
T ss_pred eeeeCCchhHHHHHH------HHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 999999999999876 666666554444446999999999999888
No 369
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.71 E-value=3e-17 Score=177.96 Aligned_cols=171 Identities=18% Similarity=0.208 Sum_probs=125.0
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccccC
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG 88 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~~~ 88 (813)
.|+++|+.+.|.+. ..-+..||+++. +|++|.|+|.||||||||++.|.|+.. |++|++.-. |.-......
T Consensus 322 ~lelrnvrfay~~~--~FhvgPiNl~ik--rGelvFliG~NGsGKST~~~LLtGL~~----PqsG~I~ld-g~pV~~e~l 392 (546)
T COG4615 322 TLELRNVRFAYQDN--AFHVGPINLTIK--RGELVFLIGGNGSGKSTLAMLLTGLYQ----PQSGEILLD-GKPVSAEQL 392 (546)
T ss_pred ceeeeeeeeccCcc--cceecceeeEEe--cCcEEEEECCCCCcHHHHHHHHhcccC----CCCCceeEC-CccCCCCCH
Confidence 59999999999762 356889999994 899999999999999999999999998 999984211 111100000
Q ss_pred ----------CCchhHHHHhhCCCcc---ccc----------------------cchHHHHHHHHHHHHHHH---hHhhh
Q 003528 89 ----------IEPCTLIMDLEGTDGR---ERG----------------------EDDTAFEKQSALFALAVS---DIVLI 130 (813)
Q Consensus 89 ----------~e~~~~vld~~g~~~~---e~~----------------------~~~~~~erQrv~iA~ALa---dvLLL 130 (813)
+.+.-+.-+..|.... +.. -+...+||+|+++-.|+. +|+++
T Consensus 393 edYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~ 472 (546)
T COG4615 393 EDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVL 472 (546)
T ss_pred HHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEe
Confidence 0111111122222211 100 011123999999999999 99999
Q ss_pred ccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEec
Q 003528 131 NMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (813)
Q Consensus 131 DEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g 196 (813)
|||.++-||.. ++.+.+.++-+-++.|+||+.||||-..-. +.|+++...+|++++..
T Consensus 473 DEWAADQDPaF------RR~FY~~lLp~LK~qGKTI~aIsHDd~YF~--~ADrll~~~~G~~~e~t 530 (546)
T COG4615 473 DEWAADQDPAF------RREFYQVLLPLLKEQGKTIFAISHDDHYFI--HADRLLEMRNGQLSELT 530 (546)
T ss_pred ehhhccCChHH------HHHHHHHHhHHHHHhCCeEEEEecCchhhh--hHHHHHHHhcCceeecc
Confidence 99999999999 999999988777778999999999986544 56777777779998653
No 370
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=4.2e-17 Score=178.54 Aligned_cols=176 Identities=15% Similarity=0.102 Sum_probs=131.1
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee------------
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------------ 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q------------ 76 (813)
.+.++++++.|.+. +++|+++||.+ ..|+.++|+||+|+||||++++|+.... +.+|.+.
T Consensus 262 ~v~F~~V~F~y~~~--r~iL~~isf~i--~~g~tvAiVg~SG~gKsTI~rllfRFyD----~~sG~I~id~qdir~vtq~ 333 (497)
T COG5265 262 AVAFINVSFAYDPR--RPILNGISFTI--PLGKTVAIVGESGAGKSTILRLLFRFYD----VNSGSITIDGQDIRDVTQQ 333 (497)
T ss_pred eEEEEEEEeecccc--chhhcCccccc--cCccEEEEEeCCCCcHHHHHHHHHHHhC----CcCceEEEcchhHHHhHHH
Confidence 47899999999884 89999999999 5899999999999999999999999985 8899831
Q ss_pred ---eccceecccccCCCchhHHHHhhCCCc--------------------------------cccccchHHHHHHHHHHH
Q 003528 77 ---TTKGIWMARCAGIEPCTLIMDLEGTDG--------------------------------RERGEDDTAFEKQSALFA 121 (813)
Q Consensus 77 ---~~~g~~~~~~~~~e~~~~vld~~g~~~--------------------------------~e~~~~~~~~erQrv~iA 121 (813)
...|+..++. ...+. +...+.+..+ .|++-.....|||||+||
T Consensus 334 slR~aIg~VPQDt-vLFND-ti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaia 411 (497)
T COG5265 334 SLRRAIGIVPQDT-VLFND-TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIA 411 (497)
T ss_pred HHHHHhCcCcccc-eehhh-hHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHH
Confidence 1223333322 21111 1111222111 112222222399999999
Q ss_pred HHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCc
Q 003528 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (813)
Q Consensus 122 ~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~ 198 (813)
|++. +||++||.|++||-.+ -+.+...++++.+ |.|-+++-|.+..+.. ++.++++. +|+|++.|+.
T Consensus 412 r~ilk~p~il~~deatsaldt~t------e~~iq~~l~~~~~--~rttlviahrlsti~~-adeiivl~-~g~i~erg~h 481 (497)
T COG5265 412 RTILKNPPILILDEATSALDTHT------EQAIQAALREVSA--GRTTLVIAHRLSTIID-ADEIIVLD-NGRIVERGTH 481 (497)
T ss_pred HHHhcCCCEEEEehhhhHhhhhH------HHHHHHHHHHHhC--CCeEEEEeehhhhccC-CceEEEee-CCEEEecCcH
Confidence 9999 9999999999999999 8999999999874 7889999999976652 45555554 5999999998
Q ss_pred ccccCC
Q 003528 199 PQAHME 204 (813)
Q Consensus 199 ~e~~~~ 204 (813)
.+++..
T Consensus 482 ~~ll~~ 487 (497)
T COG5265 482 EELLAA 487 (497)
T ss_pred HHHHHc
Confidence 887654
No 371
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.70 E-value=4.5e-17 Score=166.97 Aligned_cols=144 Identities=11% Similarity=0.073 Sum_probs=96.3
Q ss_pred eecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCe---------e------------eeccceeccccc
Q 003528 29 KEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR---------S------------QTTKGIWMARCA 87 (813)
Q Consensus 29 ~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~---------~------------q~~~g~~~~~~~ 87 (813)
+++++++ .+| +++|+|||||||||||++|+|+.. +..|. . ....+.+++...
T Consensus 14 ~~~~l~~--~~g-~~~i~G~nGsGKStll~al~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~ 86 (197)
T cd03278 14 DKTTIPF--PPG-LTAIVGPNGSGKSNIIDAIRWVLG----EQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSD 86 (197)
T ss_pred CCeeeec--CCC-cEEEECCCCCCHHHHHHHHHHHhc----cccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCC
Confidence 5678888 468 999999999999999999999975 33221 0 011233343322
Q ss_pred CCC---chhHHHHhhCCCc--cccccchHHHHHHHHHHHHHHH-------hHhhhccCCCCCCchhhcChhhHHHHHHHH
Q 003528 88 GIE---PCTLIMDLEGTDG--RERGEDDTAFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVM 155 (813)
Q Consensus 88 ~~e---~~~~vld~~g~~~--~e~~~~~~~~erQrv~iA~ALa-------dvLLLDEPtsgLD~~~~a~~~l~~~v~ell 155 (813)
... ...-+.+...... .........+||||++||++++ +++|+|||+++||+.. ...+.+.+
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~------~~~l~~~l 160 (197)
T cd03278 87 GRYSIISQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDAN------VERFARLL 160 (197)
T ss_pred CceeEEehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHH------HHHHHHHH
Confidence 110 0001111111111 1112223445999999999984 7999999999999999 99999999
Q ss_pred HHhhcCCCceEEEEeecCCCcccccCcceeeec
Q 003528 156 MRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (813)
Q Consensus 156 ~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~ 188 (813)
.++.+ +.|||+|||+++.+. .+++.+.+..
T Consensus 161 ~~~~~--~~tiIiitH~~~~~~-~~d~v~~~~~ 190 (197)
T cd03278 161 KEFSK--ETQFIVITHRKGTME-AADRLYGVTM 190 (197)
T ss_pred HHhcc--CCEEEEEECCHHHHh-hcceEEEEEe
Confidence 99864 689999999998764 4555554444
No 372
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.69 E-value=8.4e-17 Score=166.63 Aligned_cols=164 Identities=13% Similarity=0.114 Sum_probs=102.7
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCee------------e
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS------------Q 76 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~------------q 76 (813)
.|+++|+. +|.+ . .+++|... .+|++++|+|||||||||||++|.+.++... ...+.. .
T Consensus 5 ~i~l~nf~-~y~~---~---~~i~~~~~-~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~-~~~~~~~~~~~~~~~~~~~ 75 (213)
T cd03279 5 KLELKNFG-PFRE---E---QVIDFTGL-DNNGLFLICGPTGAGKSTILDAITYALYGKT-PRYGRQENLRSVFAPGEDT 75 (213)
T ss_pred EEEEECCc-CcCC---c---eEEeCCCC-CccCEEEEECCCCCCHHHHHHHheeeEecCc-cccccchhHHHHhcCCCcc
Confidence 47888887 6644 2 44556542 2588999999999999999999996543110 111110 0
Q ss_pred eccceecccccC---------CCchhH----HHHhhCCCc--cccccchHHHHHHHHHHHHHHH-------------hHh
Q 003528 77 TTKGIWMARCAG---------IEPCTL----IMDLEGTDG--RERGEDDTAFEKQSALFALAVS-------------DIV 128 (813)
Q Consensus 77 ~~~g~~~~~~~~---------~e~~~~----vld~~g~~~--~e~~~~~~~~erQrv~iA~ALa-------------dvL 128 (813)
...+..++.... .....+ .+...+... ..........|+||++||+|++ +++
T Consensus 76 ~~v~~~f~~~~~~~~~~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~l 155 (213)
T cd03279 76 AEVSFTFQLGGKKYRVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEAL 155 (213)
T ss_pred EEEEEEEEECCeEEEEEEecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEE
Confidence 011111211100 000000 000000100 0111223345999999999996 489
Q ss_pred hhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeec
Q 003528 129 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (813)
Q Consensus 129 LLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~ 188 (813)
|+|||+++||+.. ...+.+.+.++.++ +.|+|+||||++.+...++..+++.+
T Consensus 156 llDEp~~~lD~~~------~~~~~~~l~~~~~~-~~tii~itH~~~~~~~~~~~i~~~~~ 208 (213)
T cd03279 156 FIDEGFGTLDPEA------LEAVATALELIRTE-NRMVGVISHVEELKERIPQRLEVIKT 208 (213)
T ss_pred EEeCCcccCCHHH------HHHHHHHHHHHHhC-CCEEEEEECchHHHHhhCcEEEEEec
Confidence 9999999999999 99999999998754 88999999999888765555555554
No 373
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.69 E-value=2.5e-17 Score=184.64 Aligned_cols=167 Identities=15% Similarity=0.142 Sum_probs=122.0
Q ss_pred CccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccc
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC 86 (813)
Q Consensus 7 ~~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~ 86 (813)
.|.|.+.|+++.|.++ ..++++++|.+ ..+..++++||||+|||||||++.|.+. |..|......+..+++.
T Consensus 387 ~pvi~~~nv~F~y~~~--~~iy~~l~fgi--d~~srvAlVGPNG~GKsTLlKl~~gdl~----p~~G~vs~~~H~~~~~y 458 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDN--PMIYKKLNFGI--DLDSRVALVGPNGAGKSTLLKLITGDLQ----PTIGMVSRHSHNKLPRY 458 (614)
T ss_pred CCeEEEeccccCCCCc--chhhhhhhccc--CcccceeEecCCCCchhhhHHHHhhccc----cccccccccccccchhh
Confidence 5679999999999873 37899999999 5899999999999999999999999997 89998544333333311
Q ss_pred c---C------CCchhHHHH----------------hhCCCccccc---cchHHHHHHHHHHHHHHH---hHhhhccCCC
Q 003528 87 A---G------IEPCTLIMD----------------LEGTDGRERG---EDDTAFEKQSALFALAVS---DIVLINMWCH 135 (813)
Q Consensus 87 ~---~------~e~~~~vld----------------~~g~~~~e~~---~~~~~~erQrv~iA~ALa---dvLLLDEPts 135 (813)
. . .....++++ -+|+.+.... .....+||.||+||+.+. .+|||||||+
T Consensus 459 ~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtn 538 (614)
T KOG0927|consen 459 NQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTN 538 (614)
T ss_pred hhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCc
Confidence 1 1 011122222 2233222111 112234999999999999 9999999999
Q ss_pred CCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeE
Q 003528 136 DIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (813)
Q Consensus 136 gLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI 192 (813)
+||..+ ...+.+.|.+. .-++|+||||.-++...+.++.+..+ |.+
T Consensus 539 hLDi~t------id~laeaiNe~----~Ggvv~vSHDfrlI~qVaeEi~~c~~-~~~ 584 (614)
T KOG0927|consen 539 HLDIET------IDALAEAINEF----PGGVVLVSHDFRLISQVAEEIWVCEN-GTV 584 (614)
T ss_pred CCCchh------HHHHHHHHhcc----CCceeeeechhhHHHHHHHHhHhhcc-Cce
Confidence 999999 88888887764 34899999999988876666666666 444
No 374
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.69 E-value=8.9e-17 Score=199.48 Aligned_cols=180 Identities=22% Similarity=0.250 Sum_probs=135.2
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeec-------cc
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT-------KG 80 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~-------~g 80 (813)
+.++++|.++++++.+..+.|+||||.+ .+|+.++|+|+-|||||+||.+|.|-.+ ..+|..... ..
T Consensus 517 ~~i~i~~~sfsW~~~~~~~tL~dIn~~i--~~G~lvaVvG~vGsGKSSLL~AiLGEm~----~~sG~v~v~gsiaYv~Q~ 590 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDSESPEPTLKDINFEI--KKGQLVAVVGPVGSGKSSLLSAILGEMP----KLSGSVAVNGSVAYVPQQ 590 (1381)
T ss_pred ceEEEeeeeEecCCCCCcccccceeEEe--cCCCEEEEECCCCCCHHHHHHHHhcCcc----cccceEEEcCeEEEeccc
Confidence 4699999999998633355999999999 5899999999999999999999999987 888983211 12
Q ss_pred eecccccCCCchhHHH------------------HhhCCCc------cccccchHHHHHHHHHHHHHHH---hHhhhccC
Q 003528 81 IWMARCAGIEPCTLIM------------------DLEGTDG------RERGEDDTAFEKQSALFALAVS---DIVLINMW 133 (813)
Q Consensus 81 ~~~~~~~~~e~~~~vl------------------d~~g~~~------~e~~~~~~~~erQrv~iA~ALa---dvLLLDEP 133 (813)
.|++..+..+|++|.. |+.-++. .|++-....+||||+++|||+- ||.|||-|
T Consensus 591 pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDp 670 (1381)
T KOG0054|consen 591 PWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDP 670 (1381)
T ss_pred cHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCc
Confidence 3444444445544432 2222221 1334444556999999999999 99999999
Q ss_pred CCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecCccccc
Q 003528 134 CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (813)
Q Consensus 134 tsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e~~ 202 (813)
++++|.+. .+.+++-.....- +++|+|+|||.+...+ ..+.++++++|+|...|+.++..
T Consensus 671 lSAVDahv------g~~if~~ci~~~L-~~KT~ILVTHql~~L~--~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 671 LSAVDAHV------GKHIFEECIRGLL-RGKTVILVTHQLQFLP--HADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred chhhhHhh------hHHHHHHHHHhhh-cCCEEEEEeCchhhhh--hCCEEEEecCCeEecccCHHHHH
Confidence 99999999 7777776554333 3789999999988887 34445555559999999988876
No 375
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.65 E-value=5.7e-16 Score=155.81 Aligned_cols=174 Identities=17% Similarity=0.219 Sum_probs=124.4
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee-----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----------- 76 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q----------- 76 (813)
..|++.++.++|... .+++-++|+.+ +.|....++|.|||||||||++|.|-.- .-.|..+
T Consensus 12 ~aievsgl~f~y~~~--dP~~~Dfnldl--p~gsRcLlVGaNGaGKtTlLKiLsGKhm----v~~~~v~VlgrsaFhDt~ 83 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKVS--DPIFFDFNLDL--PAGSRCLLVGANGAGKTTLLKILSGKHM----VGGGVVQVLGRSAFHDTS 83 (291)
T ss_pred ceEEEeccEEecccC--CceEEEEeecc--CCCceEEEEecCCCchhhhHHHhcCccc----ccCCeEEEcCcCcccccc
Confidence 369999999999864 68999999999 5899999999999999999999999754 2223211
Q ss_pred --------eccceeccccc--C---CCchh----HHHHhhCCCccccccc---------------hHHHHHHHHHHHHHH
Q 003528 77 --------TTKGIWMARCA--G---IEPCT----LIMDLEGTDGRERGED---------------DTAFEKQSALFALAV 124 (813)
Q Consensus 77 --------~~~g~~~~~~~--~---~e~~~----~vld~~g~~~~e~~~~---------------~~~~erQrv~iA~AL 124 (813)
...|.|..... + ....+ .+.-+.|.+. +|.+. ..++||+||.|+++|
T Consensus 84 l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp-~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGL 162 (291)
T KOG2355|consen 84 LESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDP-ERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGL 162 (291)
T ss_pred ccccCceeEecccccccccccccccccccccHHHHHhhccCCCh-hHhhhhhhheeccceEEEeeccccchhhhHHHHhc
Confidence 00112211110 0 00011 1111223222 33332 233499999999999
Q ss_pred H---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEecC
Q 003528 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (813)
Q Consensus 125 a---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~ 197 (813)
. +||||||-|-+||.-. +..+++.+++-++++|.||++.||-.+-......+.+.+. .|+|+....
T Consensus 163 L~PfkVLLLDEVTVDLDVlA------RadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~-~Gkl~~~l~ 231 (291)
T KOG2355|consen 163 LKPFKVLLLDEVTVDLDVLA------RADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIK-SGKLVDNLK 231 (291)
T ss_pred ccceeEEEeeeeEeehHHHH------HHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEec-CCeeeeccc
Confidence 9 9999999999999999 9999999999999999999999999976554445555554 499987543
No 376
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.63 E-value=6.5e-16 Score=164.86 Aligned_cols=80 Identities=13% Similarity=0.051 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHH------hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcce
Q 003528 111 TAFEKQSALFALAVS------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPV 184 (813)
Q Consensus 111 ~~~erQrv~iA~ALa------dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~v 184 (813)
..+|+||+.||++|+ +++||||||+|||+.. ...+.+++.++.+. |.|+|+|+||++.+. .++.++
T Consensus 171 SgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~------~~~l~~~L~~l~~~-g~tvIiitH~~~~i~-~aD~ii 242 (261)
T cd03271 171 SGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHD------VKKLLEVLQRLVDK-GNTVVVIEHNLDVIK-CADWII 242 (261)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHH-hCCEEE
Confidence 345999999999999 3999999999999999 99999999998764 899999999998875 355444
Q ss_pred eee-----cCCeEEEecCc
Q 003528 185 LRE-----DIQKIWDSVPK 198 (813)
Q Consensus 185 ll~-----~~GkI~~~g~~ 198 (813)
.+. +.|+|++.|++
T Consensus 243 ~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 243 DLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EecCCcCCCCCEEEEeCCC
Confidence 442 56999998864
No 377
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.61 E-value=5.1e-16 Score=156.39 Aligned_cols=188 Identities=14% Similarity=0.161 Sum_probs=131.2
Q ss_pred CccEEEEeeeEEecc-ccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee---------
Q 003528 7 CCSTQLIDGDGTFNV-SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ--------- 76 (813)
Q Consensus 7 ~~~Iel~dls~~y~~-~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q--------- 76 (813)
|+.+.+.|++..+.. .+...+++++|+++ ..|+|-|++|.+|||||-..+.|+|..++....+..+.+
T Consensus 1 M~LLDIrnL~IE~~TsqG~vK~VD~v~ltl--nEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L 78 (330)
T COG4170 1 MPLLDIRNLTIEFKTSQGWVKAVDRVSMTL--NEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRL 78 (330)
T ss_pred CCcccccceEEEEecCCCceEeeeeeeeee--ccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcC
Confidence 356889999998853 23467899999999 589999999999999999999999998754322222210
Q ss_pred ----------eccceecccccC-CCchhHH-------------------------------HHhhCCCccc-----cccc
Q 003528 77 ----------TTKGIWMARCAG-IEPCTLI-------------------------------MDLEGTDGRE-----RGED 109 (813)
Q Consensus 77 ----------~~~g~~~~~~~~-~e~~~~v-------------------------------ld~~g~~~~e-----~~~~ 109 (813)
....+.|+.... .++...+ +.-+|....+ ....
T Consensus 79 ~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~E 158 (330)
T COG4170 79 SPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYE 158 (330)
T ss_pred ChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcch
Confidence 001122332211 1111111 0011111000 0011
Q ss_pred hHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceee
Q 003528 110 DTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 186 (813)
Q Consensus 110 ~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll 186 (813)
..++|-|+|+||.|++ ++||.||||+++++.+ +.+||.++-++.+..|+||++++||+..+...++++.++
T Consensus 159 lTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~T------q~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~Vl 232 (330)
T COG4170 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTT------QAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVL 232 (330)
T ss_pred hccCcceeeeeehhhccCCceEeccCCCcccCccH------HHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEE
Confidence 1223889999999999 9999999999999999 999999999999989999999999998887666666655
Q ss_pred ecCCeEEEecCcccccC
Q 003528 187 EDIQKIWDSVPKPQAHM 203 (813)
Q Consensus 187 ~~~GkI~~~g~~~e~~~ 203 (813)
. .|.-+++++.+++.+
T Consensus 233 Y-CGQ~~ESa~~e~l~~ 248 (330)
T COG4170 233 Y-CGQTVESAPSEELVT 248 (330)
T ss_pred E-ecccccccchhHHhc
Confidence 4 488888887766543
No 378
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.61 E-value=1.7e-15 Score=159.26 Aligned_cols=67 Identities=9% Similarity=-0.065 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHH-------hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcce
Q 003528 112 AFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPV 184 (813)
Q Consensus 112 ~~erQrv~iA~ALa-------dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~v 184 (813)
.+|+||++||+|++ +++|+||||++||+.. ...+.+.+.++.+ ++++|+++|+.+. ...+++.+
T Consensus 161 ~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~------~~~~~~~l~~~~~--~~~ii~~~h~~~~-~~~~d~i~ 231 (243)
T cd03272 161 GGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQY------RTAVANMIKELSD--GAQFITTTFRPEL-LEVADKFY 231 (243)
T ss_pred HHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHH------HHHHHHHHHHHhC--CCEEEEEecCHHH-HhhCCEEE
Confidence 35999999999992 7999999999999999 9999999999854 7788888888654 44556555
Q ss_pred eee
Q 003528 185 LRE 187 (813)
Q Consensus 185 ll~ 187 (813)
++.
T Consensus 232 ~l~ 234 (243)
T cd03272 232 GVK 234 (243)
T ss_pred EEE
Confidence 443
No 379
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.60 E-value=4.1e-15 Score=167.09 Aligned_cols=174 Identities=17% Similarity=0.136 Sum_probs=118.4
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCee---eeccc-----
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS---QTTKG----- 80 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~---q~~~g----- 80 (813)
.+.+.++++.|.+ ...++++.|++ .+|+.+||+|+|||||||+|++|.|-.. |..-+. .-.++
T Consensus 75 dvk~~sls~s~~g---~~l~kd~~~El--~~g~rygLiG~nG~Gkst~L~~i~~~e~----P~p~~~d~y~ls~e~~ps~ 145 (614)
T KOG0927|consen 75 DVKIESLSLSFHG---VELIKDVTLEL--NRGRRYGLIGPNGSGKSTFLRAIAGREV----PIPEHIDFYLLSREIEPSE 145 (614)
T ss_pred cceeeeeeeccCC---ceeeeeeeEEe--cCCceEEEEcCCCCcHhHHHHHHhcCCC----CCCcccchhhhcccCCCch
Confidence 5899999999988 78999999999 5899999999999999999999999887 443220 00000
Q ss_pred ------eecccccCCCchhHHHHh----------------------hCCCccc-------------------cccchHHH
Q 003528 81 ------IWMARCAGIEPCTLIMDL----------------------EGTDGRE-------------------RGEDDTAF 113 (813)
Q Consensus 81 ------~~~~~~~~~e~~~~vld~----------------------~g~~~~e-------------------~~~~~~~~ 113 (813)
.++.............+. .+.+..+ ...+...+
T Consensus 146 ~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgG 225 (614)
T KOG0927|consen 146 KQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGG 225 (614)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCch
Confidence 000000000000000000 0000000 00000112
Q ss_pred HHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCC
Q 003528 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (813)
Q Consensus 114 erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~G 190 (813)
++.|+++|++|. ++|||||||++||+.. ...+-+.|.+.- ..++++++|+-++.+..|.+++-+.. +
T Consensus 226 wrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA------~~wLee~L~k~d---~~~lVi~sh~QDfln~vCT~Ii~l~~-k 295 (614)
T KOG0927|consen 226 WRMRAALARALFQKPDLLLLDEPTNHLDLEA------IVWLEEYLAKYD---RIILVIVSHSQDFLNGVCTNIIHLDN-K 295 (614)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHH------HHHHHHHHHhcc---CceEEEEecchhhhhhHhhhhheecc-c
Confidence 999999999999 9999999999999998 777777777652 22899999999999988888877766 6
Q ss_pred e-EEEecCcccc
Q 003528 191 K-IWDSVPKPQA 201 (813)
Q Consensus 191 k-I~~~g~~~e~ 201 (813)
+ +.+.|+.+..
T Consensus 296 kl~~y~Gnydqy 307 (614)
T KOG0927|consen 296 KLIYYEGNYDQY 307 (614)
T ss_pred ceeeecCCHHHH
Confidence 6 6667765543
No 380
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=2.5e-15 Score=164.03 Aligned_cols=163 Identities=17% Similarity=0.185 Sum_probs=116.7
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee---ccceecc
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---TKGIWMA 84 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---~~g~~~~ 84 (813)
|.+-+.|+++.|.+. ++.+.+++|-|. -...++|+||||.||||||++|.|-+. |..|+.+. .+..||.
T Consensus 585 PvLGlH~VtFgy~gq--kpLFkkldFGiD--mdSRiaIVGPNGVGKSTlLkLL~Gkl~----P~~GE~RKnhrL~iG~Fd 656 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQ--KPLFKKLDFGID--MDSRIAIVGPNGVGKSTLLKLLIGKLD----PNDGELRKNHRLRIGWFD 656 (807)
T ss_pred CeeecccccccCCCC--Cchhhccccccc--ccceeEEECCCCccHHHHHHHHhcCCC----CCcchhhccceeeeechh
Confidence 578899999999764 789999999984 567899999999999999999999986 99998432 2234444
Q ss_pred cccC-----CC-chhHHHHhhCCCccc-----------------cccchHHHHHHHHHHHHHHH---hHhhhccCCCCCC
Q 003528 85 RCAG-----IE-PCTLIMDLEGTDGRE-----------------RGEDDTAFEKQSALFALAVS---DIVLINMWCHDIG 138 (813)
Q Consensus 85 ~~~~-----~e-~~~~vld~~g~~~~e-----------------~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD 138 (813)
+..+ .+ +..++...+.++-.+ ...+...+|+-||+||---+ |||||||||++||
T Consensus 657 Qh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLD 736 (807)
T KOG0066|consen 657 QHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLD 736 (807)
T ss_pred hhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcc
Confidence 4322 11 222222222222111 11122334999999985444 9999999999999
Q ss_pred chhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeec
Q 003528 139 REQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (813)
Q Consensus 139 ~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~ 188 (813)
.++ ...+-+.|.+. +-.||+||||-..+..-.+..+++.+
T Consensus 737 IES------IDALaEAIney----~GgVi~VsHDeRLi~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 737 IES------IDALAEAINEY----NGGVIMVSHDERLIVETDCNLWVVEN 776 (807)
T ss_pred hhh------HHHHHHHHHhc----cCcEEEEecccceeeecCceEEEEcc
Confidence 999 88888888875 34799999999877655555555554
No 381
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.59 E-value=1.7e-15 Score=156.20 Aligned_cols=146 Identities=14% Similarity=0.106 Sum_probs=93.3
Q ss_pred ceeeeccCCcEEEEEcCCCCcHHHHHHHHH----cCCCCCCCCCCCee------------eeccceecccccC----CCc
Q 003528 32 KLSDCGLSYAVVSIMGPQSSGKSTLLNHLF----GTNFREMDAFKGRS------------QTTKGIWMARCAG----IEP 91 (813)
Q Consensus 32 sl~i~~~~GeivaIiGpNGSGKSTLLn~L~----Gl~~~~m~p~sG~~------------q~~~g~~~~~~~~----~e~ 91 (813)
.+++. +| +++|+|||||||||||++|. |..+ +..|.. ....+..++.... ...
T Consensus 17 ~l~~~--~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~----~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r 89 (204)
T cd03240 17 EIEFF--SP-LTLIVGQNGAGKTTIIEALKYALTGELP----PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITR 89 (204)
T ss_pred EEecC--CC-eEEEECCCCCCHHHHHHHHHHHHcCCCC----cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEE
Confidence 44552 35 99999999999999999994 7776 555521 0111222222200 001
Q ss_pred hhHHHHhhCCCccc--------cccchHHHHHHH------HHHHHHHH---hHhhhccCCCCCCchhhcChhhHH-HHHH
Q 003528 92 CTLIMDLEGTDGRE--------RGEDDTAFEKQS------ALFALAVS---DIVLINMWCHDIGREQAANKPLLK-TVFQ 153 (813)
Q Consensus 92 ~~~vld~~g~~~~e--------~~~~~~~~erQr------v~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~-~v~e 153 (813)
...+.+..-....+ .......+|+|| +++|++++ +++|+|||+++||+.. .. .+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~------~~~~l~~ 163 (204)
T cd03240 90 SLAILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEEN------IEESLAE 163 (204)
T ss_pred EhhHhhceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHH------HHHHHHH
Confidence 11222322111111 111222348886 56777777 9999999999999998 88 9999
Q ss_pred HHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCe
Q 003528 154 VMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (813)
Q Consensus 154 ll~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~Gk 191 (813)
.+.++.++.+.++|++||+++... .+++++.+.++|+
T Consensus 164 ~l~~~~~~~~~~iiiitH~~~~~~-~~d~i~~l~~~~~ 200 (204)
T cd03240 164 IIEERKSQKNFQLIVITHDEELVD-AADHIYRVEKDGR 200 (204)
T ss_pred HHHHHHhccCCEEEEEEecHHHHh-hCCEEEEEeeCCC
Confidence 999987655789999999998765 4666666655453
No 382
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.55 E-value=3e-15 Score=155.31 Aligned_cols=68 Identities=9% Similarity=-0.032 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHH-------hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcce
Q 003528 112 AFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPV 184 (813)
Q Consensus 112 ~~erQrv~iA~ALa-------dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~v 184 (813)
..|+||++||+|++ +++|+||||+|||+.. ...+.+.+.++.+ +.++|++||+.+.. ..+++++
T Consensus 130 ~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~------~~~l~~~l~~~~~--~~~~iivs~~~~~~-~~~d~v~ 200 (212)
T cd03274 130 GGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRN------VSIVANYIKERTK--NAQFIVISLRNNMF-ELADRLV 200 (212)
T ss_pred HHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHH------HHHHHHHHHHHcC--CCEEEEEECcHHHH-HhCCEEE
Confidence 35999999999883 7999999999999999 9999999999853 67899999996543 4566655
Q ss_pred eeec
Q 003528 185 LRED 188 (813)
Q Consensus 185 ll~~ 188 (813)
++..
T Consensus 201 ~~~~ 204 (212)
T cd03274 201 GIYK 204 (212)
T ss_pred EEEe
Confidence 5543
No 383
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.54 E-value=2.4e-14 Score=158.02 Aligned_cols=137 Identities=21% Similarity=0.188 Sum_probs=97.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccccCCCchhHHHHhhCC------Cc--------
Q 003528 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGT------DG-------- 103 (813)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~~~~e~~~~vld~~g~------~~-------- 103 (813)
..|||++++||||-||||+.++|+|.+. |++|.....+-.+-++....+...+|.+++.. ..
T Consensus 365 ~~gEvigilGpNgiGKTTFvk~LAG~ik----Pdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~ 440 (591)
T COG1245 365 YDGEVIGILGPNGIGKTTFVKLLAGVIK----PDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIV 440 (591)
T ss_pred ecceEEEEECCCCcchHHHHHHHhcccc----CCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhc
Confidence 4689999999999999999999999998 89886222222222222211111122221100 00
Q ss_pred -c-------c-cccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEee
Q 003528 104 -R-------E-RGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIR 171 (813)
Q Consensus 104 -~-------e-~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtH 171 (813)
+ + .......+|.|||+||.+|+ |+.|||||.+-||.++ +-.+-.++++.....++|.++|-|
T Consensus 441 ~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEq------R~~vakvIRR~~e~~~kta~vVdH 514 (591)
T COG1245 441 KPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQ------RIIVAKVIRRFIENNEKTALVVDH 514 (591)
T ss_pred CccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHH------HHHHHHHHHHHHhhcCceEEEEec
Confidence 0 0 11122234999999999999 9999999999999999 999999999999888999999999
Q ss_pred cCCCcccccCcce
Q 003528 172 DKTRTPLENLEPV 184 (813)
Q Consensus 172 D~~~~~~~~~~~v 184 (813)
|+-.+....++.+
T Consensus 515 Di~~~dyvsDr~i 527 (591)
T COG1245 515 DIYMIDYVSDRLI 527 (591)
T ss_pred ceehhhhhhceEE
Confidence 9987775444433
No 384
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.53 E-value=2.5e-14 Score=151.47 Aligned_cols=71 Identities=13% Similarity=0.030 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHH-------hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCccee
Q 003528 113 FEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVL 185 (813)
Q Consensus 113 ~erQrv~iA~ALa-------dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vl 185 (813)
.|+||++||++++ +++|+|||+++||+.. ...+.+.+.++.++ |.++|+|||+.+... .+++.++
T Consensus 159 G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~------~~~l~~~i~~~~~~-g~~vi~isH~~~~~~-~~d~i~~ 230 (247)
T cd03275 159 GEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTN------VGKVASYIREQAGP-NFQFIVISLKEEFFS-KADALVG 230 (247)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHH------HHHHHHHHHHhccC-CcEEEEEECCHHHHh-hCCeEEE
Confidence 4999999999994 7999999999999999 99999999998764 899999999987654 4677766
Q ss_pred eecCCe
Q 003528 186 REDIQK 191 (813)
Q Consensus 186 l~~~Gk 191 (813)
+..++.
T Consensus 231 ~~~~~~ 236 (247)
T cd03275 231 VYRDQE 236 (247)
T ss_pred EEecCC
Confidence 665443
No 385
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.53 E-value=2.3e-14 Score=147.11 Aligned_cols=140 Identities=13% Similarity=0.079 Sum_probs=92.5
Q ss_pred eecceeeeccCC-cEEEEEcCCCCcHHHHHHHHH--------cCCCCCCCCCCCeeeeccceecccccCCCchhHHHHhh
Q 003528 29 KEVKLSDCGLSY-AVVSIMGPQSSGKSTLLNHLF--------GTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLE 99 (813)
Q Consensus 29 ~~vsl~i~~~~G-eivaIiGpNGSGKSTLLn~L~--------Gl~~~~m~p~sG~~q~~~g~~~~~~~~~e~~~~vld~~ 99 (813)
-+++|++. +| ++++|.|||||||||||++|. |... |..+. ...+.+.+... ..
T Consensus 18 ~~~~~~i~--~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~v----p~~~~--~~~~~~~~~~~----------~l 79 (200)
T cd03280 18 VPLDIQLG--ENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPI----PAAEG--SSLPVFENIFA----------DI 79 (200)
T ss_pred EcceEEEC--CCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCc----ccccc--ccCcCccEEEE----------ec
Confidence 35688884 56 589999999999999999998 6544 33211 01111111100 01
Q ss_pred CCCc--cccccchHHHHHHHHHHHHHHH--hHhhhccCCCCCCchhhcChhhHHHHHH-HHHHhhcCCCceEEEEeecCC
Q 003528 100 GTDG--RERGEDDTAFEKQSALFALAVS--DIVLINMWCHDIGREQAANKPLLKTVFQ-VMMRLFSPRKTTLMFVIRDKT 174 (813)
Q Consensus 100 g~~~--~e~~~~~~~~erQrv~iA~ALa--dvLLLDEPtsgLD~~~~a~~~l~~~v~e-ll~~L~~~~g~TIL~VtHD~~ 174 (813)
+... ..........|+|++.++.++. +++|+|||++++|+.. ...+.. ++..+.+ .+.++|++||+.+
T Consensus 80 g~~~~l~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~------~~~i~~~~l~~l~~-~~~~vi~~tH~~~ 152 (200)
T cd03280 80 GDEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVE------GAALAIAILEELLE-RGALVIATTHYGE 152 (200)
T ss_pred CchhhhhcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHH------HHHHHHHHHHHHHh-cCCEEEEECCHHH
Confidence 1100 0111223445889999988877 9999999999999998 777764 5666654 4899999999965
Q ss_pred CcccccCcceeeecCCeEEEe
Q 003528 175 RTPLENLEPVLREDIQKIWDS 195 (813)
Q Consensus 175 ~~~~~~~~~vll~~~GkI~~~ 195 (813)
.. ..+++.+.+.+ |++..+
T Consensus 153 l~-~~~d~~~~l~~-g~l~~~ 171 (200)
T cd03280 153 LK-AYAYKREGVEN-ASMEFD 171 (200)
T ss_pred HH-HHHhcCCCeEE-EEEEEe
Confidence 43 44666666655 888765
No 386
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=1.3e-14 Score=162.22 Aligned_cols=161 Identities=15% Similarity=0.099 Sum_probs=106.9
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccc-c
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC-A 87 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~-~ 87 (813)
-|.+.+.+..|++ +.+|.+.++++ ..|+.+||+|+||+||||||++|+...-... |.. |..+|...... .
T Consensus 80 Di~~~~fdLa~G~---k~LL~~a~L~L--~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f-~ve---qE~~g~~t~~~~~ 150 (582)
T KOG0062|consen 80 DIHIDNFDLAYGG---KILLNKANLTL--SRGRRYGLVGRNGIGKSTLLRAIANGQVSGF-HVE---QEVRGDDTEALQS 150 (582)
T ss_pred ceeeeeeeeeecc---hhhhcCCceee--ecccccceeCCCCCcHHHHHHHHHhcCcCcc-Cch---hheeccchHHHhh
Confidence 4788899999987 78999999999 5899999999999999999999997322111 221 11112111111 0
Q ss_pred CCCchhHHHHh-----------------------hCCCcccccc---chHHHHHHHHHHHHHHH---hHhhhccCCCCCC
Q 003528 88 GIEPCTLIMDL-----------------------EGTDGRERGE---DDTAFEKQSALFALAVS---DIVLINMWCHDIG 138 (813)
Q Consensus 88 ~~e~~~~vld~-----------------------~g~~~~e~~~---~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD 138 (813)
+.+......++ .|........ ....+=|.|+++||||. |+|||||||+.||
T Consensus 151 ~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLD 230 (582)
T KOG0062|consen 151 VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLD 230 (582)
T ss_pred hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccch
Confidence 11111111111 1211110000 01112688999999999 9999999999999
Q ss_pred chhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeec
Q 003528 139 REQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (813)
Q Consensus 139 ~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~ 188 (813)
..+ ..-+-+.|... +.|+|+||||-++....|.+++-+.+
T Consensus 231 v~a------v~WLe~yL~t~----~~T~liVSHDr~FLn~V~tdIIH~~~ 270 (582)
T KOG0062|consen 231 VVA------VAWLENYLQTW----KITSLIVSHDRNFLNTVCTDIIHLEN 270 (582)
T ss_pred hHH------HHHHHHHHhhC----CceEEEEeccHHHHHHHHHHHHHHhh
Confidence 998 76666666653 58999999999988776766655544
No 387
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.51 E-value=6.6e-15 Score=140.80 Aligned_cols=102 Identities=25% Similarity=0.231 Sum_probs=68.2
Q ss_pred eeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee---------------ccceecccccCCC--
Q 003528 28 IKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---------------TKGIWMARCAGIE-- 90 (813)
Q Consensus 28 L~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---------------~~g~~~~~~~~~e-- 90 (813)
|+++||++ .+|++++|+|+||||||||+++|+|... |.+|+... ..+.+.+......
T Consensus 1 L~~v~~~i--~~g~~~~i~G~nGsGKStLl~~l~g~~~----~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 74 (137)
T PF00005_consen 1 LKNVSLEI--KPGEIVAIVGPNGSGKSTLLKALAGLLP----PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGL 74 (137)
T ss_dssp EEEEEEEE--ETTSEEEEEESTTSSHHHHHHHHTTSSH----ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTS
T ss_pred CCceEEEE--cCCCEEEEEccCCCccccceeeeccccc----cccccccccccccccccccccccccccccccccccccc
Confidence 68999999 5899999999999999999999999997 78888311 1111222111000
Q ss_pred ---------chhHHHHhhCCCc--cc----cccchHHHHHHHHHHHHHHH---hHhhhccCCC
Q 003528 91 ---------PCTLIMDLEGTDG--RE----RGEDDTAFEKQSALFALAVS---DIVLINMWCH 135 (813)
Q Consensus 91 ---------~~~~vld~~g~~~--~e----~~~~~~~~erQrv~iA~ALa---dvLLLDEPts 135 (813)
....+++..+... .. .......+||||++||+|++ +++||||||+
T Consensus 75 tv~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 75 TVRENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp BHHHHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 0111222222211 11 11334456999999999999 9999999986
No 388
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.50 E-value=9.1e-15 Score=178.22 Aligned_cols=177 Identities=15% Similarity=0.166 Sum_probs=123.1
Q ss_pred ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCee------------eeccceecccccCC--
Q 003528 24 IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS------------QTTKGIWMARCAGI-- 89 (813)
Q Consensus 24 ~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~------------q~~~g~~~~~~~~~-- 89 (813)
.+.+|+||+=-+ .+|-..||+|+||||||||||+|+|-.. +...+|.+ ....|.+-|+..+.
T Consensus 803 ~~qLL~~V~G~~--kPG~LTALMG~SGAGKTTLLdvLA~R~t--~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 803 TRQLLNNVSGAF--KPGVLTALMGESGAGKTTLLDVLAGRKT--GGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred ceEhhhcCceEe--cCCceeehhcCCCCchHHHHHHHhcCcc--cceEEeEEEECCeeCchhhhccccceeecccccCcc
Confidence 367999999888 5899999999999999999999999753 12334441 11223333332221
Q ss_pred ----C---------------------chhHHHHhhCCCccc------cccchHHHHHHHHHHHHHHH----hHhhhccCC
Q 003528 90 ----E---------------------PCTLIMDLEGTDGRE------RGEDDTAFEKQSALFALAVS----DIVLINMWC 134 (813)
Q Consensus 90 ----e---------------------~~~~vld~~g~~~~e------~~~~~~~~erQrv~iA~ALa----dvLLLDEPt 134 (813)
| .+-.|++.+++.... .+.....-||+|+.||.-|+ -||+|||||
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPT 958 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPT 958 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCC
Confidence 1 111222233332100 11112223999999999998 699999999
Q ss_pred CCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCccc-ccCcceeeecCCeEEEecCcccccCCccchhhhcc
Q 003528 135 HDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL-ENLEPVLREDIQKIWDSVPKPQAHMETPLSEFFNV 213 (813)
Q Consensus 135 sgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~-~~~~~vll~~~GkI~~~g~~~e~~~~~~l~d~f~~ 213 (813)
+|||... .-.|++.++++... |.|||.++|.+..... ..|+.+++...|+.+..|+..+.. ..+-++|..
T Consensus 959 SGLDsqa------A~~i~~~lrkla~t-GqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s--~~li~YFes 1029 (1391)
T KOG0065|consen 959 SGLDSQA------AAIVMRFLRKLADT-GQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENS--SKLIEYFES 1029 (1391)
T ss_pred CCccHHH------HHHHHHHHHHHHhc-CCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccccc--HHHHHHHHh
Confidence 9999999 99999999999984 9999999999965433 345667777789999999887642 346667764
No 389
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.50 E-value=1.4e-13 Score=159.42 Aligned_cols=154 Identities=15% Similarity=0.130 Sum_probs=113.2
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccc---eecc
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG---IWMA 84 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g---~~~~ 84 (813)
.+|.++|++..-+++ ...|++.+|.+ .+|+.+.|.|+||||||||+|+|+|+-+ --+|+.....+ .+++
T Consensus 391 ~~i~~~nl~l~~p~~--~~ll~~l~~~v--~~G~~llI~G~SG~GKTsLlRaiaGLWP----~g~G~I~~P~~~~~lflp 462 (604)
T COG4178 391 HGITLENLSLRTPDG--QTLLSELNFEV--RPGERLLITGESGAGKTSLLRALAGLWP----WGSGRISMPADSALLFLP 462 (604)
T ss_pred ceeEEeeeeEECCCC--Ceeeccceeee--CCCCEEEEECCCCCCHHHHHHHHhccCc----cCCCceecCCCCceEEec
Confidence 579999999998764 68999999999 5899999999999999999999999997 56677432222 2333
Q ss_pred cccCCC--------------------chhHHHHhhCCCcc----ccccc----hHHHHHHHHHHHHHHH---hHhhhccC
Q 003528 85 RCAGIE--------------------PCTLIMDLEGTDGR----ERGED----DTAFEKQSALFALAVS---DIVLINMW 133 (813)
Q Consensus 85 ~~~~~e--------------------~~~~vld~~g~~~~----e~~~~----~~~~erQrv~iA~ALa---dvLLLDEP 133 (813)
+..... ...-++.-.|++.- ++..+ ...+||||++|||.+. ++++|||-
T Consensus 463 Q~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEA 542 (604)
T COG4178 463 QRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEA 542 (604)
T ss_pred CCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecc
Confidence 322111 11122222233211 00001 1123999999999999 99999999
Q ss_pred CCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcc
Q 003528 134 CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (813)
Q Consensus 134 tsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~ 177 (813)
|++||+.. ...+++++++-. .++|||-|.|......
T Consensus 543 TsALDe~~------e~~l~q~l~~~l--p~~tvISV~Hr~tl~~ 578 (604)
T COG4178 543 TSALDEET------EDRLYQLLKEEL--PDATVISVGHRPTLWN 578 (604)
T ss_pred hhccChHH------HHHHHHHHHhhC--CCCEEEEeccchhhHH
Confidence 99999999 999999988743 4899999999997655
No 390
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.47 E-value=2e-13 Score=140.24 Aligned_cols=149 Identities=10% Similarity=0.024 Sum_probs=90.5
Q ss_pred eecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCC-CCCCe----------eeeccceecccccCCCch-----
Q 003528 29 KEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD-AFKGR----------SQTTKGIWMARCAGIEPC----- 92 (813)
Q Consensus 29 ~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~-p~sG~----------~q~~~g~~~~~~~~~e~~----- 92 (813)
+++.+.+ .-.+.+|+|||||||||||.+|......... ...|. ........+.......+.
T Consensus 13 ~~~~l~f---~~gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~ 89 (198)
T cd03276 13 RHLQIEF---GPRVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLS 89 (198)
T ss_pred eeeEEec---CCCeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHH
Confidence 5556665 3458899999999999999998743321000 00121 001111122111111100
Q ss_pred -hHHHHhhCCC--ccccccchHHHHHHHHHHHHHH----H---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcC-
Q 003528 93 -TLIMDLEGTD--GRERGEDDTAFEKQSALFALAV----S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP- 161 (813)
Q Consensus 93 -~~vld~~g~~--~~e~~~~~~~~erQrv~iA~AL----a---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~- 161 (813)
..+-+..... ...........||||++||+|+ + +++|+|||+++||+.. ...+.+.+.++..+
T Consensus 90 ~~~~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~------~~~~~~~l~~~~~~~ 163 (198)
T cd03276 90 QDMARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVN------RKISTDLLVKEAKKQ 163 (198)
T ss_pred HHHHHHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHH------HHHHHHHHHHHHhcC
Confidence 0111111111 1112223345699999999998 3 9999999999999999 99999999998653
Q ss_pred -CCceEEEEeecCCCcccccCcceeee
Q 003528 162 -RKTTLMFVIRDKTRTPLENLEPVLRE 187 (813)
Q Consensus 162 -~g~TIL~VtHD~~~~~~~~~~~vll~ 187 (813)
.+.|||+++|+++.+.. .+++.++.
T Consensus 164 ~~~~~iii~th~~~~i~~-~d~v~~~~ 189 (198)
T cd03276 164 PGRQFIFITPQDISGLAS-SDDVKVFR 189 (198)
T ss_pred CCcEEEEEECCccccccc-ccceeEEE
Confidence 24689999999998874 34444443
No 391
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.45 E-value=2.5e-13 Score=144.11 Aligned_cols=65 Identities=5% Similarity=0.053 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHH-------hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcc
Q 003528 111 TAFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEP 183 (813)
Q Consensus 111 ~~~erQrv~iA~ALa-------dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~ 183 (813)
...|+||+++|++++ +++|+||||++||+.. ...+++.+.++. + |.++|++||+.+... .++++
T Consensus 168 S~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~------~~~~~~~l~~~~-~-g~~ii~iSH~~~~~~-~~d~v 238 (251)
T cd03273 168 SGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSH------TQNIGRMIKTHF-K-GSQFIVVSLKEGMFN-NANVL 238 (251)
T ss_pred CHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHH------HHHHHHHHHHHc-C-CCEEEEEECCHHHHH-hCCEE
Confidence 345999999999884 7999999999999999 999999999985 3 789999999965554 34444
Q ss_pred e
Q 003528 184 V 184 (813)
Q Consensus 184 v 184 (813)
+
T Consensus 239 ~ 239 (251)
T cd03273 239 F 239 (251)
T ss_pred E
Confidence 3
No 392
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.44 E-value=1.9e-13 Score=167.14 Aligned_cols=81 Identities=14% Similarity=0.080 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHH------hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCccee
Q 003528 112 AFEKQSALFALAVS------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVL 185 (813)
Q Consensus 112 ~~erQrv~iA~ALa------dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vl 185 (813)
.+|+||+.||++|+ +++||||||+|||+.. ...+.+++.++.+. |.|||+++|+++.+. .++.++.
T Consensus 831 gGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~------~~~L~~~L~~l~~~-G~TVIvi~H~~~~i~-~aD~ii~ 902 (924)
T TIGR00630 831 GGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDD------IKKLLEVLQRLVDQ-GNTVVVIEHNLDVIK-TADYIID 902 (924)
T ss_pred HHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHH-hCCEEEE
Confidence 35999999999998 5999999999999999 99999999999764 899999999998775 3555554
Q ss_pred ee-----cCCeEEEecCccc
Q 003528 186 RE-----DIQKIWDSVPKPQ 200 (813)
Q Consensus 186 l~-----~~GkI~~~g~~~e 200 (813)
+. +.|+|+..|++.+
T Consensus 903 Lgp~~G~~gG~iv~~G~~~~ 922 (924)
T TIGR00630 903 LGPEGGDGGGTIVASGTPEE 922 (924)
T ss_pred ecCCccCCCCEEEEeCCHHH
Confidence 42 5699999998754
No 393
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.44 E-value=2.5e-13 Score=154.73 Aligned_cols=172 Identities=13% Similarity=0.182 Sum_probs=120.9
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---------- 77 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~---------- 77 (813)
+.+++.|++.. ..++++||++ .+|||++|.|-=|||+|-|+++|||..+ +.+|+..-
T Consensus 262 ~~l~v~~l~~~-------~~~~dvSf~v--r~GEIlGiaGLvGaGRTEl~~~lfG~~~----~~~G~i~l~G~~v~~~sp 328 (500)
T COG1129 262 PVLEVRNLSGG-------GKVRDVSFTV--RAGEILGIAGLVGAGRTELARALFGARP----ASSGEILLDGKPVRIRSP 328 (500)
T ss_pred cEEEEecCCCC-------CceeCceeEE--eCCcEEEEeccccCCHHHHHHHHhCCCc----CCCceEEECCEEccCCCH
Confidence 34666666432 2578999999 5899999999999999999999999886 77787210
Q ss_pred ----ccc-eecccc---cC-------CCchhHH-HHhhC-C-Cccccccc--h---------------------HHHHHH
Q 003528 78 ----TKG-IWMARC---AG-------IEPCTLI-MDLEG-T-DGRERGED--D---------------------TAFEKQ 116 (813)
Q Consensus 78 ----~~g-~~~~~~---~~-------~e~~~~v-ld~~g-~-~~~e~~~~--~---------------------~~~erQ 116 (813)
..| .+.+.. .+ .+|..+. +.-.. . .-..+.+. . ..+-+|
T Consensus 329 ~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQ 408 (500)
T COG1129 329 RDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQ 408 (500)
T ss_pred HHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhh
Confidence 001 111111 01 1222222 11100 0 00000000 0 012899
Q ss_pred HHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEE
Q 003528 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (813)
Q Consensus 117 rv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~ 193 (813)
+|.||+.|+ +||||||||.|+|... ..+|++++.++.++ |++||++|-++.++...|+++++|.+ |+|+
T Consensus 409 KVvlarwL~~~p~vLilDEPTRGIDVGA------K~eIy~li~~lA~~-G~ail~iSSElpEll~~~DRIlVm~~-Gri~ 480 (500)
T COG1129 409 KVVLARWLATDPKVLILDEPTRGIDVGA------KAEIYRLIRELAAE-GKAILMISSELPELLGLSDRILVMRE-GRIV 480 (500)
T ss_pred hHHHHHHHhcCCCEEEECCCCcCcccch------HHHHHHHHHHHHHC-CCEEEEEeCChHHHHhhCCEEEEEEC-CEEE
Confidence 999999999 9999999999999999 99999999999986 99999999999887766777777766 9999
Q ss_pred EecCccc
Q 003528 194 DSVPKPQ 200 (813)
Q Consensus 194 ~~g~~~e 200 (813)
...+..+
T Consensus 481 ~e~~~~~ 487 (500)
T COG1129 481 GELDREE 487 (500)
T ss_pred EEecccc
Confidence 8776655
No 394
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.42 E-value=3.1e-13 Score=172.42 Aligned_cols=82 Identities=10% Similarity=-0.017 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHH------hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceee
Q 003528 113 FEKQSALFALAVS------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 186 (813)
Q Consensus 113 ~erQrv~iA~ALa------dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll 186 (813)
+|+||+.||++|+ +++||||||+|||+.. ...+++++.++.+. |.|||+|+|+++.+ ..+++++++
T Consensus 813 GE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~------~~~Ll~lL~~L~~~-G~TVIiIsHdl~~i-~~aDrVi~L 884 (1809)
T PRK00635 813 GEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHD------IKALIYVLQSLTHQ-GHTVVIIEHNMHVV-KVADYVLEL 884 (1809)
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHH-HhCCEEEEE
Confidence 4999999999994 8999999999999999 99999999999765 99999999999887 455555555
Q ss_pred e-----cCCeEEEecCccccc
Q 003528 187 E-----DIQKIWDSVPKPQAH 202 (813)
Q Consensus 187 ~-----~~GkI~~~g~~~e~~ 202 (813)
. +.|+++..|++.++.
T Consensus 885 ~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 885 GPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred ccCCCCCCCEEEEeCCHHHHH
Confidence 3 258999999887754
No 395
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.40 E-value=1.9e-13 Score=140.57 Aligned_cols=133 Identities=14% Similarity=0.065 Sum_probs=80.6
Q ss_pred cceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccccCCCchhHHHHhhCCCcc
Q 003528 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGR 104 (813)
Q Consensus 25 ~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~~~~e~~~~vld~~g~~~~ 104 (813)
..++++++|.. |++++|+||||||||||||+|+|... + ...|.........++ .........+.+......
T Consensus 14 ~~v~n~i~l~~----g~~~~ltGpNg~GKSTllr~i~~~~~--l-~~~G~~v~a~~~~~q-~~~l~~~~~~~d~l~~~~- 84 (199)
T cd03283 14 KRVANDIDMEK----KNGILITGSNMSGKSTFLRTIGVNVI--L-AQAGAPVCASSFELP-PVKIFTSIRVSDDLRDGI- 84 (199)
T ss_pred CeecceEEEcC----CcEEEEECCCCCChHHHHHHHHHHHH--H-HHcCCEEecCccCcc-cceEEEeccchhcccccc-
Confidence 45778887775 79999999999999999999998763 0 123442222222222 111112222222221110
Q ss_pred ccccchHHHHHHHHHHHHHH----H-hHhhhccCCCCCCchhhcChhhHHHHHH-HHHHhhcCCCceEEEEeecCCCcc
Q 003528 105 ERGEDDTAFEKQSALFALAV----S-DIVLINMWCHDIGREQAANKPLLKTVFQ-VMMRLFSPRKTTLMFVIRDKTRTP 177 (813)
Q Consensus 105 e~~~~~~~~erQrv~iA~AL----a-dvLLLDEPtsgLD~~~~a~~~l~~~v~e-ll~~L~~~~g~TIL~VtHD~~~~~ 177 (813)
.....+.+++.-+... . +++|+|||++|+|+.. ...+.. ++.++.+ .|.++|++||+++.+.
T Consensus 85 ----s~~~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~------~~~l~~~ll~~l~~-~~~tiiivTH~~~~~~ 152 (199)
T cd03283 85 ----SYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRE------RQAASAAVLKFLKN-KNTIGIISTHDLELAD 152 (199)
T ss_pred ----ChHHHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHH------HHHHHHHHHHHHHH-CCCEEEEEcCcHHHHH
Confidence 0011122333332222 2 8999999999999998 666654 5666654 4899999999998765
No 396
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.39 E-value=5.1e-13 Score=163.81 Aligned_cols=85 Identities=12% Similarity=0.072 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHH------hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcce
Q 003528 111 TAFEKQSALFALAVS------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPV 184 (813)
Q Consensus 111 ~~~erQrv~iA~ALa------dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~v 184 (813)
..+|+||+.||++|+ +++||||||+|||+.. ...+++++.++.+. |.|||+|+||++.+. .++.++
T Consensus 832 SgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~------~~~L~~~L~~l~~~-G~TVIiitH~~~~i~-~aD~ii 903 (943)
T PRK00349 832 SGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFED------IRKLLEVLHRLVDK-GNTVVVIEHNLDVIK-TADWII 903 (943)
T ss_pred CHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEecCHHHHH-hCCEEE
Confidence 345999999999998 3999999999999999 99999999999754 899999999998875 455555
Q ss_pred eee-----cCCeEEEecCcccccC
Q 003528 185 LRE-----DIQKIWDSVPKPQAHM 203 (813)
Q Consensus 185 ll~-----~~GkI~~~g~~~e~~~ 203 (813)
.+. +.|+|+..|++.++..
T Consensus 904 ~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 904 DLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred EecCCcCCCCCEEEEeCCHHHHHh
Confidence 552 4599999998877653
No 397
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.39 E-value=7e-13 Score=136.22 Aligned_cols=148 Identities=15% Similarity=0.097 Sum_probs=84.1
Q ss_pred ceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccccCCCchhHHHHhhCCCccccccchH
Q 003528 32 KLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDT 111 (813)
Q Consensus 32 sl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~~~~e~~~~vld~~g~~~~e~~~~~~ 111 (813)
++.+. .|++++|+|||||||||||++|.+... -...|.........+.. .+.....+... ..........
T Consensus 23 ~~~l~--~~~~~~l~G~Ng~GKStll~~i~~~~~---~~~~g~~~~~~~~~i~~---~dqi~~~~~~~--d~i~~~~s~~ 92 (202)
T cd03243 23 DINLG--SGRLLLITGPNMGGKSTYLRSIGLAVL---LAQIGCFVPAESASIPL---VDRIFTRIGAE--DSISDGRSTF 92 (202)
T ss_pred eEEEc--CCeEEEEECCCCCccHHHHHHHHHHHH---HHHcCCCccccccccCC---cCEEEEEecCc--ccccCCceeH
Confidence 45563 589999999999999999999995432 02223211000000000 00000000000 0000000112
Q ss_pred HHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHH-HHHhhcCCCceEEEEeecCCCcccccCcceeee
Q 003528 112 AFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQV-MMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE 187 (813)
Q Consensus 112 ~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~el-l~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~ 187 (813)
..+.+++..+.+++ +++|+|||++|+|+.. ...+... +..+.+ .+.++|++||+.+.... ++....+.
T Consensus 93 ~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~------~~~l~~~ll~~l~~-~~~~vi~~tH~~~~~~~-~~~~~~l~ 164 (202)
T cd03243 93 MAELLELKEILSLATPRSLVLIDELGRGTSTAE------GLAIAYAVLEHLLE-KGCRTLFATHFHELADL-PEQVPGVK 164 (202)
T ss_pred HHHHHHHHHHHHhccCCeEEEEecCCCCCCHHH------HHHHHHHHHHHHHh-cCCeEEEECChHHHHHH-hhcCCCeE
Confidence 23445555555555 9999999999999987 6666554 444444 48899999999877663 44444444
Q ss_pred cCCeEEEecCc
Q 003528 188 DIQKIWDSVPK 198 (813)
Q Consensus 188 ~~GkI~~~g~~ 198 (813)
. +++...+..
T Consensus 165 ~-~~~~~~~~~ 174 (202)
T cd03243 165 N-LHMEELITT 174 (202)
T ss_pred E-EEEEEEecC
Confidence 4 777766544
No 398
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.37 E-value=5e-13 Score=132.75 Aligned_cols=127 Identities=13% Similarity=0.133 Sum_probs=84.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccccCCCchhHHHHhhCCCccccccchHHHHHHHH
Q 003528 39 SYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSA 118 (813)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~~~~e~~~~vld~~g~~~~e~~~~~~~~erQrv 118 (813)
++.++.|+|||||||||+|+.+..... ...|......+.-...........++....+ ...+|+||+
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~---------lS~G~~~~~ 86 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLALG----GAQSATRRRSGVKAGCIVAAVSAELIFTRLQ---------LSGGEKELS 86 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH----hcchhhhccCcccCCCcceeeEEEEehheee---------ccccHHHHH
Confidence 457999999999999999999876654 2322211100000000000001011111111 334589999
Q ss_pred HHHHHHH-------hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceee
Q 003528 119 LFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 186 (813)
Q Consensus 119 ~iA~ALa-------dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll 186 (813)
.+|++++ +++|+|||+.++|+.. ...+.+.+.++..+ +.++|++||+++.... +++.+.+
T Consensus 87 ~la~~L~~~~~~~~~llllDEp~~gld~~~------~~~l~~~l~~~~~~-~~~vii~TH~~~~~~~-~d~~~~l 153 (162)
T cd03227 87 ALALILALASLKPRPLYILDEIDRGLDPRD------GQALAEAILEHLVK-GAQVIVITHLPELAEL-ADKLIHI 153 (162)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHhc-CCEEEEEcCCHHHHHh-hhhEEEE
Confidence 9999996 7999999999999999 89999999988766 8999999999987763 4443333
No 399
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.36 E-value=1.2e-12 Score=144.86 Aligned_cols=163 Identities=18% Similarity=0.143 Sum_probs=104.3
Q ss_pred cEEEEee--------eEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee---
Q 003528 9 STQLIDG--------DGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT--- 77 (813)
Q Consensus 9 ~Iel~dl--------s~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~--- 77 (813)
+|.|.|+ ..+|+..+ .-| -+|.+. .+|.+++|+|+||-||||-+|+|+|.+. |.-|+...
T Consensus 66 AI~IvnLP~eLe~e~vHRYg~Ng--FkL--~~LP~p-r~G~V~GilG~NGiGKsTalkILaGel~----PNLG~~~~pp~ 136 (591)
T COG1245 66 AISIVNLPEELEEEVVHRYGVNG--FKL--YRLPTP-RPGKVVGILGPNGIGKSTALKILAGELK----PNLGRYEDPPS 136 (591)
T ss_pred eEEEecCchhhcccceeeccCCc--eEE--ecCCCC-CCCcEEEEEcCCCccHHHHHHHHhCccc----cCCCCCCCCCC
Confidence 4666654 56676532 122 245565 4899999999999999999999999998 66676211
Q ss_pred -------ccce----eccccc-----CCCchh-----------HHHH----------------hhCCCcc--ccccchHH
Q 003528 78 -------TKGI----WMARCA-----GIEPCT-----------LIMD----------------LEGTDGR--ERGEDDTA 112 (813)
Q Consensus 78 -------~~g~----~~~~~~-----~~e~~~-----------~vld----------------~~g~~~~--e~~~~~~~ 112 (813)
.+|. +|.... ....+. .+.+ .+++..- ........
T Consensus 137 wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSG 216 (591)
T COG1245 137 WDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSG 216 (591)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCc
Confidence 0110 111000 000000 0001 1111000 00001112
Q ss_pred HHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeec
Q 003528 113 FEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (813)
Q Consensus 113 ~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~ 188 (813)
+|.||++||.+++ |+.++|||++-||..+ +-.+..++++|.+. +++||+|.||+.......+ .+.+..
T Consensus 217 GELQr~aIaa~l~rdADvY~FDEpsSyLDi~q------Rl~~ar~Irel~~~-~k~ViVVEHDLavLD~lsD-~vhI~Y 287 (591)
T COG1245 217 GELQRVAIAAALLRDADVYFFDEPSSYLDIRQ------RLNAARVIRELAED-GKYVIVVEHDLAVLDYLSD-FVHILY 287 (591)
T ss_pred hHHHHHHHHHHHhccCCEEEEcCCcccccHHH------HHHHHHHHHHHhcc-CCeEEEEechHHHHHHhhh-eeEEEe
Confidence 3999999999999 9999999999999999 99999999999876 8999999999987664333 333333
No 400
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.36 E-value=1e-12 Score=132.84 Aligned_cols=138 Identities=12% Similarity=0.038 Sum_probs=84.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeec--cceecccccCCCchhHHHH--hhCCCccccccchHHHHHHH
Q 003528 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT--KGIWMARCAGIEPCTLIMD--LEGTDGRERGEDDTAFEKQS 117 (813)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~--~g~~~~~~~~~e~~~~vld--~~g~~~~e~~~~~~~~erQr 117 (813)
+.+|+||||||||++|.+|.-..... ....++.... ...........-.+.+..+ +.-.+..+..+.....|+||
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~LS~Ge~~r 102 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGK-AAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQGKVEQILSGGEKSL 102 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcc-cccccCcchhhhcccccCCCCceEEEEEEEECceEEecCCcCcccCCHHHHHH
Confidence 99999999999999999986443200 0111110000 0000000000000000000 11112222223355679999
Q ss_pred HHHHHHHH-------hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeec
Q 003528 118 ALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (813)
Q Consensus 118 v~iA~ALa-------dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~ 188 (813)
+++|++++ +++|+|||+++||+.. ...+.+.+.++.+. |.++|++||+++... .+++.+.+..
T Consensus 103 ~~Laral~~~~~~~p~llilDEp~~~LD~~~------~~~i~~~L~~~~~~-g~tiIiiSH~~~~~~-~adrvi~i~~ 172 (178)
T cd03239 103 SALALIFALQEIKPSPFYVLDEIDAALDPTN------RRRVSDMIKEMAKH-TSQFIVITLKKEMFE-NADKLIGVLF 172 (178)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEECCHHHHh-hCCeEEEEEE
Confidence 99999883 9999999999999999 99999999998764 789999999997665 3555554444
No 401
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1.3e-12 Score=146.61 Aligned_cols=169 Identities=17% Similarity=0.143 Sum_probs=119.0
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCee----eeccceec
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS----QTTKGIWM 83 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~----q~~~g~~~ 83 (813)
|.+++.++++.|.++. -.++.++++.+ ..-..++++|+||+||||+++++.|-.. |.+|-. +...+.+.
T Consensus 361 p~l~i~~V~f~y~p~~-y~~~~~~~~d~--e~~sRi~~vg~ng~gkst~lKi~~~~l~----~~rgi~~~~~r~ri~~f~ 433 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSE-YQWRKQLGLDR--ESDSRISRVGENGDGKSTLLKILKGDLT----PTRGIVGRHPRLRIKYFA 433 (582)
T ss_pred CeeEEEeeeccCCCcc-hhhhhccCCcc--chhhhhheeccCchhHHHHHHHHhccCC----cccceeeecccceecchh
Confidence 5799999999998742 27999999998 4678899999999999999999999765 666652 11223333
Q ss_pred ccccCC-C-------------------chhHHHHhhCCCcccccc---chHHHHHHHHHHHHHHH---hHhhhccCCCCC
Q 003528 84 ARCAGI-E-------------------PCTLIMDLEGTDGRERGE---DDTAFEKQSALFALAVS---DIVLINMWCHDI 137 (813)
Q Consensus 84 ~~~~~~-e-------------------~~~~vld~~g~~~~e~~~---~~~~~erQrv~iA~ALa---dvLLLDEPtsgL 137 (813)
++.... + .+.--+.-+|+++.-... ....+||-||+||.... .+|+|||||+.|
T Consensus 434 Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhL 513 (582)
T KOG0062|consen 434 QHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHL 513 (582)
T ss_pred HhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccc
Confidence 322210 0 111111112332221111 11223999999998888 999999999999
Q ss_pred CchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEE
Q 003528 138 GREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (813)
Q Consensus 138 D~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~ 194 (813)
|.++ +..+-+.++.. +-.||+||||.+++...|....+..+ |+|..
T Consensus 514 D~ds------l~AL~~Al~~F----~GGVv~VSHd~~fi~~~c~E~Wvve~-g~vt~ 559 (582)
T KOG0062|consen 514 DRDS------LGALAKALKNF----NGGVVLVSHDEEFISSLCKELWVVED-GKVTP 559 (582)
T ss_pred cHHH------HHHHHHHHHhc----CCcEEEEECcHHHHhhcCceeEEEcC-CcEEe
Confidence 9999 88888888775 33799999999999877766666665 98864
No 402
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.28 E-value=1.3e-11 Score=128.22 Aligned_cols=74 Identities=8% Similarity=0.046 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHH-------hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCC-ceEEEEeecCCCcccccCc-
Q 003528 112 AFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRK-TTLMFVIRDKTRTPLENLE- 182 (813)
Q Consensus 112 ~~erQrv~iA~ALa-------dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g-~TIL~VtHD~~~~~~~~~~- 182 (813)
.+|||++.+|.+++ +++|+|||+++||+.. ...+++.+.++.++.| .++|++||++......+++
T Consensus 129 ~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~------~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~ 202 (213)
T cd03277 129 GGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTN------ERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKM 202 (213)
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHH------HHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCce
Confidence 34999888775532 8999999999999999 9999999999876534 5899999998655444432
Q ss_pred ceeeecCCe
Q 003528 183 PVLREDIQK 191 (813)
Q Consensus 183 ~vll~~~Gk 191 (813)
.++...+|+
T Consensus 203 ~v~~l~~g~ 211 (213)
T cd03277 203 TVLCVYNGP 211 (213)
T ss_pred EEEEEecCc
Confidence 333333365
No 403
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.26 E-value=3.6e-12 Score=133.28 Aligned_cols=150 Identities=15% Similarity=0.096 Sum_probs=91.4
Q ss_pred cceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccccC-CCchhHHHHhhCCCc
Q 003528 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG-IEPCTLIMDLEGTDG 103 (813)
Q Consensus 25 ~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~~~-~e~~~~vld~~g~~~ 103 (813)
..+.+++++.. .+++++.|.||||+||||||+.++-... | ...|- +.+.... ......+++..|+..
T Consensus 17 ~~v~~~~~~~~--~~~~~~~l~G~n~~GKstll~~i~~~~~--l-a~~g~-------~vpa~~~~~~~~~~il~~~~l~d 84 (222)
T cd03285 17 AFIPNDVTLTR--GKSRFLIITGPNMGGKSTYIRQIGVIVL--M-AQIGC-------FVPCDSADIPIVDCILARVGASD 84 (222)
T ss_pred CeEEeeEEEee--cCCeEEEEECCCCCChHHHHHHHHHHHH--H-HHhCC-------CcCcccEEEeccceeEeeecccc
Confidence 46789999998 4799999999999999999999763211 0 01121 1110000 000011112223322
Q ss_pred cccccchHHHHHHHHHHHHHH--H---hHhhhccC---CCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCC
Q 003528 104 RERGEDDTAFEKQSALFALAV--S---DIVLINMW---CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR 175 (813)
Q Consensus 104 ~e~~~~~~~~erQrv~iA~AL--a---dvLLLDEP---tsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~ 175 (813)
. .......+++++..+++++ + +++||||| |+++|+.. ... .++..+.++.|.++|++||+.+.
T Consensus 85 ~-~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~------~~~--~il~~l~~~~~~~vlisTH~~el 155 (222)
T cd03285 85 S-QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFG------LAW--AIAEYIATQIKCFCLFATHFHEL 155 (222)
T ss_pred c-hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHH------HHH--HHHHHHHhcCCCeEEEEechHHH
Confidence 1 1233456788888888888 4 99999999 88899887 322 22233333347899999997544
Q ss_pred cccccCcceeeecCCeEEEecC
Q 003528 176 TPLENLEPVLREDIQKIWDSVP 197 (813)
Q Consensus 176 ~~~~~~~~vll~~~GkI~~~g~ 197 (813)
...+++...+.+ |++...+.
T Consensus 156 -~~~~~~~~~i~~-g~~~~~~~ 175 (222)
T cd03285 156 -TALADEVPNVKN-LHVTALTD 175 (222)
T ss_pred -HHHhhcCCCeEE-EEEEEEEe
Confidence 334555555544 88876654
No 404
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.25 E-value=1.9e-11 Score=134.05 Aligned_cols=160 Identities=16% Similarity=0.173 Sum_probs=108.5
Q ss_pred cceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCC----CCCCCCeeee---ccceecccccC-CCchhHHH
Q 003528 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFRE----MDAFKGRSQT---TKGIWMARCAG-IEPCTLIM 96 (813)
Q Consensus 25 ~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~----m~p~sG~~q~---~~g~~~~~~~~-~e~~~~vl 96 (813)
..+++|+||.+ ..|++++|+|+|||||||||++|.|..+.- ..|++|...- +.....+...- ..+-..++
T Consensus 396 ryvlr~vNL~i--kpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~til 473 (593)
T COG2401 396 RYVLRNLNLEI--KPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTIL 473 (593)
T ss_pred eeeeeceeeEe--cCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHH
Confidence 45799999999 589999999999999999999999986632 2366666321 11111111100 00111222
Q ss_pred Hhh-----------------CCCcc----ccccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHH
Q 003528 97 DLE-----------------GTDGR----ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVF 152 (813)
Q Consensus 97 d~~-----------------g~~~~----e~~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ 152 (813)
+.+ |+... ..-.+....|+.|+-||.+++ .+++.||..+-||+.+ ...+.
T Consensus 474 ehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~T------A~rVA 547 (593)
T COG2401 474 EHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELT------AVRVA 547 (593)
T ss_pred HHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHH------HHHHH
Confidence 222 22110 011122234999999999999 8999999999999999 88888
Q ss_pred HHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeE
Q 003528 153 QVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (813)
Q Consensus 153 ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI 192 (813)
.-+.+++++.|.|+++|||..+......-|.+++..=|+.
T Consensus 548 rkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v 587 (593)
T COG2401 548 RKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKV 587 (593)
T ss_pred HHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecccc
Confidence 8888888888999999999999876554455444432443
No 405
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.24 E-value=7.7e-12 Score=129.19 Aligned_cols=135 Identities=19% Similarity=0.178 Sum_probs=81.6
Q ss_pred cceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccccCCCchhHHHHhhCCCcc
Q 003528 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGR 104 (813)
Q Consensus 25 ~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~~~~e~~~~vld~~g~~~~ 104 (813)
..+.++++|.. .+|++++|+||||+||||||+++.|+.. | ..-|-.. ....+.....+.+... .+....
T Consensus 16 ~~v~~~~~~~~--~~~~~~~l~G~n~~GKstll~~i~~~~~--l-a~~G~~v---pa~~~~l~~~d~I~~~---~~~~d~ 84 (204)
T cd03282 16 NFIPNDIYLTR--GSSRFHIITGPNMSGKSTYLKQIALLAI--M-AQIGCFV---PAEYATLPIFNRLLSR---LSNDDS 84 (204)
T ss_pred cEEEeeeEEee--CCCcEEEEECCCCCCHHHHHHHHHHHHH--H-HHcCCCc---chhhcCccChhheeEe---cCCccc
Confidence 56899999999 4789999999999999999999987753 1 1112100 0000011111111111 121110
Q ss_pred ccccchHHH--HHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHH-HHHHHHhhcCCCceEEEEeecCCCccc
Q 003528 105 ERGEDDTAF--EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTV-FQVMMRLFSPRKTTLMFVIRDKTRTPL 178 (813)
Q Consensus 105 e~~~~~~~~--erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v-~ell~~L~~~~g~TIL~VtHD~~~~~~ 178 (813)
.......+ +.+++..+.+++ +++|+|||+.|+|+.. ...+ ..++..+.+. |.++|++||+.+.+..
T Consensus 85 -~~~~~S~fs~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~------~~~l~~~il~~l~~~-~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 85 -MERNLSTFASEMSETAYILDYADGDSLVLIDELGRGTSSAD------GFAISLAILECLIKK-ESTVFFATHFRDIAAI 156 (204)
T ss_pred -cchhhhHHHHHHHHHHHHHHhcCCCcEEEeccccCCCCHHH------HHHHHHHHHHHHHhc-CCEEEEECChHHHHHH
Confidence 11111222 333445555555 9999999999999965 3333 3445555544 8999999999987654
No 406
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.19 E-value=1.8e-11 Score=127.47 Aligned_cols=152 Identities=13% Similarity=0.024 Sum_probs=80.7
Q ss_pred cceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccccCCCchhHHHHhhCCCcc
Q 003528 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGR 104 (813)
Q Consensus 25 ~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~~~~e~~~~vld~~g~~~~ 104 (813)
..+.+++++.. +.++++|+|||||||||||+++++... ....|........-++........+.+.+...
T Consensus 18 ~~v~n~~~l~~---~~~~~~l~Gpn~sGKstllr~i~~~~~---l~~~g~~vp~~~~~i~~~~~i~~~~~~~~~ls---- 87 (216)
T cd03284 18 PFVPNDTELDP---ERQILLITGPNMAGKSTYLRQVALIAL---LAQIGSFVPASKAEIGVVDRIFTRIGASDDLA---- 87 (216)
T ss_pred ceEeeeEEecC---CceEEEEECCCCCChHHHHHHHHHHHH---HhccCCeeccccceecceeeEeccCCchhhhc----
Confidence 45788888887 349999999999999999999987643 12223211100000000000001111111111
Q ss_pred ccccchHHHHHHHHHHHHHHH-----hHhhhccC---CCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCc
Q 003528 105 ERGEDDTAFEKQSALFALAVS-----DIVLINMW---CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 176 (813)
Q Consensus 105 e~~~~~~~~erQrv~iA~ALa-----dvLLLDEP---tsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~ 176 (813)
.....+...+..++.++. .++|+||| |+++|... ....+++.+ .+..+.++|++||+.+..
T Consensus 88 ---~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~-----~~~~il~~l---~~~~~~~vi~~TH~~~l~ 156 (216)
T cd03284 88 ---GGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLS-----IAWAIVEYL---HEKIGAKTLFATHYHELT 156 (216)
T ss_pred ---cCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHH-----HHHHHHHHH---HhccCCcEEEEeCcHHHH
Confidence 111233333344444443 89999999 77777654 123333333 332378999999997654
Q ss_pred ccccCcceeeecCCeEEEecCcc
Q 003528 177 PLENLEPVLREDIQKIWDSVPKP 199 (813)
Q Consensus 177 ~~~~~~~vll~~~GkI~~~g~~~ 199 (813)
. .+++...+ .+|++...+...
T Consensus 157 ~-l~~~~~~v-~~~~~~~~~~~~ 177 (216)
T cd03284 157 E-LEGKLPRV-KNFHVAVKEKGG 177 (216)
T ss_pred H-HhhcCCCe-EEEEEEEEeeCC
Confidence 3 23332223 336666554443
No 407
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.17 E-value=1.3e-10 Score=132.11 Aligned_cols=162 Identities=18% Similarity=0.120 Sum_probs=110.5
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeec-----cc-e
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT-----KG-I 81 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~-----~g-~ 81 (813)
.+|++.+++..=+.+ ...+++++||.+ ..|.-+.|.||||||||+||+.|.|+-+ -.+|+.... ++ .
T Consensus 432 n~i~~e~v~l~tPt~-g~~lie~Ls~~V--~~g~~LLItG~sG~GKtSLlRvlggLWp----~~~G~l~k~~~~~~~~lf 504 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTN-GDLLIENLSLEV--PSGQNLLITGPSGCGKTSLLRVLGGLWP----STGGKLTKPTDGGPKDLF 504 (659)
T ss_pred ceEEeeeeeecCCCC-CceeeeeeeeEe--cCCCeEEEECCCCCchhHHHHHHhcccc----cCCCeEEecccCCCCceE
Confidence 479999999987652 367889999999 5899999999999999999999999986 567773211 11 1
Q ss_pred ecccccC------C-------------------CchhHHHHhhCCCcc-c--------cccc----hHHHHHHHHHHHHH
Q 003528 82 WMARCAG------I-------------------EPCTLIMDLEGTDGR-E--------RGED----DTAFEKQSALFALA 123 (813)
Q Consensus 82 ~~~~~~~------~-------------------e~~~~vld~~g~~~~-e--------~~~~----~~~~erQrv~iA~A 123 (813)
++++.+- . +.+.-.+++.++..- + ..-+ ...+|+||+++||-
T Consensus 505 flPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARL 584 (659)
T KOG0060|consen 505 FLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARL 584 (659)
T ss_pred EecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHH
Confidence 2222211 0 122223333322210 0 0011 11249999999999
Q ss_pred HH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeec
Q 003528 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (813)
Q Consensus 124 La---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~ 188 (813)
+. ++-||||.|+++|... -..+.+.++ +.|+|.|=|.|...... .-+.++-++
T Consensus 585 fy~kPk~AiLDE~TSAv~~dv------E~~~Yr~~r----~~giT~iSVgHRkSL~k--fHd~~L~~~ 640 (659)
T KOG0060|consen 585 FYHKPKFAILDECTSAVTEDV------EGALYRKCR----EMGITFISVGHRKSLWK--FHDYVLRMD 640 (659)
T ss_pred HhcCCceEEeechhhhccHHH------HHHHHHHHH----HcCCeEEEeccHHHHHh--hhhEEEEec
Confidence 99 9999999999999876 555555544 45999999999998766 234455555
No 408
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=3.4e-11 Score=132.21 Aligned_cols=167 Identities=16% Similarity=0.142 Sum_probs=104.1
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccccC
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG 88 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~~~ 88 (813)
-|.|.|.+.+-.+ +..+.+.||.| ..|+.++++||||-||||||++|+.--+. .+|.---..+...++......
T Consensus 264 DIKiEnF~ISA~G---k~LFvnA~L~I--v~GRRYGLVGPNG~GKTTLLkHIa~Rala-IPpnIDvLlCEQEvvad~t~A 337 (807)
T KOG0066|consen 264 DIKIENFDISAQG---KLLFVNASLTI--VYGRRYGLVGPNGMGKTTLLKHIAARALA-IPPNIDVLLCEQEVVADSTSA 337 (807)
T ss_pred cceeeeeeeeccc---ceeeeccceEE--EecceecccCCCCCchHHHHHHHHhhhcc-CCCCCceEeeeeeeeecCcHH
Confidence 4888888888766 67888999999 47999999999999999999999865431 112211111111111100000
Q ss_pred C--------------------------------CchhHH---HHhhCCCccc-cccchHHH------------------H
Q 003528 89 I--------------------------------EPCTLI---MDLEGTDGRE-RGEDDTAF------------------E 114 (813)
Q Consensus 89 ~--------------------------------e~~~~v---ld~~g~~~~e-~~~~~~~~------------------e 114 (813)
+ +..--+ +.-.|..+.+ +..++..+ =
T Consensus 338 i~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGW 417 (807)
T KOG0066|consen 338 IDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGW 417 (807)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCce
Confidence 0 000000 0111222221 11111111 4
Q ss_pred HHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCe
Q 003528 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (813)
Q Consensus 115 rQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~Gk 191 (813)
|.||.+||||- -+|+|||||+.||... ..-+-+.+.-+ ++|++||+||-++....|.+++-+.. .+
T Consensus 418 RMRvSLARALflEPTLLMLDEPTNHLDLNA------VIWLdNYLQgW----kKTLLIVSHDQgFLD~VCtdIIHLD~-qk 486 (807)
T KOG0066|consen 418 RMRVSLARALFLEPTLLMLDEPTNHLDLNA------VIWLDNYLQGW----KKTLLIVSHDQGFLDSVCTDIIHLDN-QK 486 (807)
T ss_pred eeehhHHHHHhcCceeeeecCCccccccce------eeehhhHHhhh----hheeEEEecccchHHHHHHHHhhhhh-hh
Confidence 67999999999 8999999999999887 44444444433 56999999999998877777665544 55
Q ss_pred E
Q 003528 192 I 192 (813)
Q Consensus 192 I 192 (813)
+
T Consensus 487 L 487 (807)
T KOG0066|consen 487 L 487 (807)
T ss_pred h
Confidence 4
No 409
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.13 E-value=8.3e-11 Score=122.28 Aligned_cols=125 Identities=16% Similarity=0.180 Sum_probs=73.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccccCCCchhHHHHhhCCC-ccccccchHHHHHHHH
Q 003528 40 YAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTD-GRERGEDDTAFEKQSA 118 (813)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~~~~e~~~~vld~~g~~-~~e~~~~~~~~erQrv 118 (813)
+.+++|.||||+||||||+.+..... | +..|........-++. .+.... ..+.. ...........+-||+
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~--l-a~~G~~v~a~~~~~~~---~d~i~~---~l~~~~si~~~~S~f~~el~~l 99 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVF--L-AHIGSFVPADSATIGL---VDKIFT---RMSSRESVSSGQSAFMIDLYQV 99 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHH--H-HhCCCeeEcCCcEEee---eeeeee---eeCCccChhhccchHHHHHHHH
Confidence 38999999999999999999984211 0 2334421110000000 000000 00000 0000011122377899
Q ss_pred HHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcC--CCceEEEEeecCCCccc
Q 003528 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP--RKTTLMFVIRDKTRTPL 178 (813)
Q Consensus 119 ~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~--~g~TIL~VtHD~~~~~~ 178 (813)
.++++++ .++|+|||++|+|+..+ ...+..++.++.+. .+.++|++||+++.+..
T Consensus 100 ~~~l~~~~~~slvllDE~~~gtd~~~~-----~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 100 SKALRLATRRSLVLIDEFGKGTDTEDG-----AGLLIATIEHLLKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred HHHHHhCCCCcEEEeccccCCCCHHHH-----HHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence 9998888 99999999999998650 33334566666543 24589999999987654
No 410
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.13 E-value=2e-10 Score=129.09 Aligned_cols=151 Identities=15% Similarity=0.127 Sum_probs=102.7
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee---eccceeccc
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ---TTKGIWMAR 85 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q---~~~g~~~~~ 85 (813)
.|.++|+-.--+.. ..++..++|.+ .+|--+.|+||||||||+|+++|.|+.+ ...|... ..+-.+.++
T Consensus 481 gI~lenIpvItP~~--~vvv~~Ltf~i--~~G~hLLItGPNGCGKSSLfRILggLWP----vy~g~L~~P~~~~mFYIPQ 552 (728)
T KOG0064|consen 481 GIILENIPVITPAG--DVLVPKLTFQI--EPGMHLLITGPNGCGKSSLFRILGGLWP----VYNGLLSIPRPNNIFYIPQ 552 (728)
T ss_pred ceEEecCceeccCc--ceeecceeEEe--cCCceEEEECCCCccHHHHHHHHhccCc----ccCCeeecCCCcceEeccC
Confidence 47777777766542 56789999999 5899999999999999999999999997 6777621 111122222
Q ss_pred ccC------CC-------------------chhHHHHhhCCC-------ccccccch----HHHHHHHHHHHHHHH---h
Q 003528 86 CAG------IE-------------------PCTLIMDLEGTD-------GRERGEDD----TAFEKQSALFALAVS---D 126 (813)
Q Consensus 86 ~~~------~e-------------------~~~~vld~~g~~-------~~e~~~~~----~~~erQrv~iA~ALa---d 126 (813)
.+. .+ +..-+++.+.+. +-+...+. ..+||||+.+||..- +
T Consensus 553 RPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPk 632 (728)
T KOG0064|consen 553 RPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPK 632 (728)
T ss_pred CCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcc
Confidence 211 11 111222221110 01111111 123999999999999 9
Q ss_pred HhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcc
Q 003528 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (813)
Q Consensus 127 vLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~ 177 (813)
..+|||.|+++-+.. -..+++..++ .|.++|-|||.+....
T Consensus 633 yalLDEcTsAvsidv------E~~i~~~ak~----~gi~llsithrpslwk 673 (728)
T KOG0064|consen 633 YALLDECTSAVSIDV------EGKIFQAAKD----AGISLLSITHRPSLWK 673 (728)
T ss_pred hhhhhhhhcccccch------HHHHHHHHHh----cCceEEEeecCccHHH
Confidence 999999999987776 6677777665 4999999999998765
No 411
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.03 E-value=1.6e-10 Score=117.38 Aligned_cols=119 Identities=18% Similarity=0.123 Sum_probs=66.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc-CCCCCCCCCCCeeeeccceecccccCCCchhHHHHhhCCCccccccchHHHHHHHHHH
Q 003528 42 VVSIMGPQSSGKSTLLNHLFG-TNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 120 (813)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~G-l~~~~m~p~sG~~q~~~g~~~~~~~~~e~~~~vld~~g~~~~e~~~~~~~~erQrv~i 120 (813)
++.|.||||+||||||+.+.- ... +..|.........++.. +... ...+.... .......+.++...+
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~l----a~~G~~v~a~~~~~~~~---d~il---~~~~~~d~-~~~~~s~fs~~~~~l 69 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIM----AQIGSFVPAESAELPVF---DRIF---TRIGASDS-LAQGLSTFMVEMKET 69 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHH----HHhCCCeeehheEeccc---ceEE---EEeCCCCc-hhccccHHHHHHHHH
Confidence 468999999999999999983 322 23343211111111110 1110 11111111 111122332333334
Q ss_pred HHHHH-----hHhhhccCCCCCCchhhcChhhHHHHHH-HHHHhhcCCCceEEEEeecCCCcc
Q 003528 121 ALAVS-----DIVLINMWCHDIGREQAANKPLLKTVFQ-VMMRLFSPRKTTLMFVIRDKTRTP 177 (813)
Q Consensus 121 A~ALa-----dvLLLDEPtsgLD~~~~a~~~l~~~v~e-ll~~L~~~~g~TIL~VtHD~~~~~ 177 (813)
+.++. +++|+|||++|+|+.. ...+.. ++..+.++.+.++|++||+++...
T Consensus 70 ~~~l~~~~~~~llllDEp~~g~d~~~------~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~ 126 (185)
T smart00534 70 ANILKNATENSLVLLDELGRGTSTYD------GVAIAAAVLEYLLEKIGALTLFATHYHELTK 126 (185)
T ss_pred HHHHHhCCCCeEEEEecCCCCCCHHH------HHHHHHHHHHHHHhcCCCeEEEEecHHHHHH
Confidence 44444 7999999999999987 556544 445554434789999999996443
No 412
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.02 E-value=6e-10 Score=116.56 Aligned_cols=135 Identities=14% Similarity=0.162 Sum_probs=79.7
Q ss_pred cceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccccCCCchhHHHHhhCCCcc
Q 003528 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGR 104 (813)
Q Consensus 25 ~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~~~~e~~~~vld~~g~~~~ 104 (813)
..+.+++++.+ ..|++++|+||||+||||||++++|... -+..|........-++. .+.+.. ..+.. .
T Consensus 18 ~~v~n~i~~~~--~~g~~~~itG~N~~GKStll~~i~~~~~---la~~G~~v~a~~~~~~~---~~~i~~---~~~~~-d 85 (222)
T cd03287 18 SFVPNDIHLSA--EGGYCQIITGPNMGGKSSYIRQVALITI---MAQIGSFVPASSATLSI---FDSVLT---RMGAS-D 85 (222)
T ss_pred CEEEEeEEEEe--cCCcEEEEECCCCCCHHHHHHHHHHHHH---HHhCCCEEEcCceEEec---cceEEE---EecCc-c
Confidence 46788999998 4799999999999999999999999432 15667632111111110 011100 01111 0
Q ss_pred ccccchHHH--HHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHH-HHHHHHHhhcCCCceEEEEeecCCCcc
Q 003528 105 ERGEDDTAF--EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKT-VFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (813)
Q Consensus 105 e~~~~~~~~--erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~-v~ell~~L~~~~g~TIL~VtHD~~~~~ 177 (813)
........| |-+++.-....+ .++|+|||.+|.++.. ... ...++..+.+..+.++|++||+++...
T Consensus 86 ~~~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d------~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 86 SIQHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHD------GIAIAYATLHYLLEEKKCLVLFVTHYPSLGE 158 (222)
T ss_pred ccccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhh------HHHHHHHHHHHHHhccCCeEEEEcccHHHHH
Confidence 111112233 333333333333 8999999999888665 333 234444444434789999999998754
No 413
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=99.01 E-value=3e-10 Score=119.04 Aligned_cols=195 Identities=43% Similarity=0.618 Sum_probs=113.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcC--CCCCCCCCCCeeeeccceecccccC---CCchhHHHHhhCCCccccccchHH
Q 003528 38 LSYAVVSIMGPQSSGKSTLLNHLFGT--NFREMDAFKGRSQTTKGIWMARCAG---IEPCTLIMDLEGTDGRERGEDDTA 112 (813)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl--~~~~m~p~sG~~q~~~g~~~~~~~~---~e~~~~vld~~g~~~~e~~~~~~~ 112 (813)
.+..+|+|+|+.++|||||||.|+|. .+.++ .+..++|+|+|+..... ....++++|..|++..++.+ ..
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~---~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~--~~ 79 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVM---DTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGE--FE 79 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEec---CCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCc--hh
Confidence 35679999999999999999999999 66332 23356899999875543 23567788999998777654 12
Q ss_pred HHHHHHHHHHHHHhHhhhccCCCCCCchhhcChhhHHHHHHH----HHHhhcCCCceEEEEeecCCCccc-ccCc-----
Q 003528 113 FEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQV----MMRLFSPRKTTLMFVIRDKTRTPL-ENLE----- 182 (813)
Q Consensus 113 ~erQrv~iA~ALadvLLLDEPtsgLD~~~~a~~~l~~~v~el----l~~L~~~~g~TIL~VtHD~~~~~~-~~~~----- 182 (813)
...+..+++..+++++|.+-+.+..+........+.+..... ...........++++.+|...... ....
T Consensus 80 ~~~~~~~l~~llss~~i~n~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvRD~~~~~~~~~~~~~~~~ 159 (224)
T cd01851 80 DDARLFALATLLSSVLIYNSWETILGDDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVRDFSLDTPLENLDITEGR 159 (224)
T ss_pred hhhHHHHHHHHHhCEEEEeccCcccHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEecCcCCcccccccccccc
Confidence 334556666666799999988765544432223333322111 112223457889999999964321 1110
Q ss_pred ceeeecCCeEEEecCcccccCCccchhhhccccccccc--------chhhHHHHHHHHHHHHhhhh
Q 003528 183 PVLREDIQKIWDSVPKPQAHMETPLSEFFNVEVVALSS--------FEEKEELFKEQVASLRQRFY 240 (813)
Q Consensus 183 ~vll~~~GkI~~~g~~~e~~~~~~l~d~f~~~~~~lp~--------~~~~~e~f~~~v~~Lr~~f~ 240 (813)
.....+.-+||....++.. ..-.+.|....++..+ ....+++|.+++..|+++|.
T Consensus 160 ~~~~~~~~~ir~~l~~~f~---~~~~~cf~l~~p~~~~~~~~~~~~~~~l~~eF~~~l~~L~~~~~ 222 (224)
T cd01851 160 ETLIEDLNKIWSSIRKPFE---NPPIDCFFLPRPGLLHHLLQNEGRLKLLPPEFLEALKELRDRFF 222 (224)
T ss_pred chhHHHHHHHHHHHHhhcc---CCcchheeccccccchhhcccccchhhCCHHHHHHHHHHHHHhc
Confidence 0011111122222221110 0122223332222222 24456789999999999986
No 414
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.01 E-value=7.9e-10 Score=129.97 Aligned_cols=81 Identities=14% Similarity=0.155 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHH------hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeee
Q 003528 114 EKQSALFALAVS------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE 187 (813)
Q Consensus 114 erQrv~iA~ALa------dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~ 187 (813)
|.||+-+|.-|+ -+.||||||+||=..- .+.+++++.+|... |-|||+|.|+++.+. ..|.++-.
T Consensus 827 EaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~D------i~kLl~VL~rLvd~-GnTViVIEHNLdVIk--~AD~IIDL 897 (935)
T COG0178 827 EAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDD------IKKLLEVLHRLVDK-GNTVIVIEHNLDVIK--TADWIIDL 897 (935)
T ss_pred HHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEecccceEe--ecCEEEEc
Confidence 999999999999 7999999999999998 99999999999875 999999999999987 44544432
Q ss_pred ------cCCeEEEecCcccccC
Q 003528 188 ------DIQKIWDSVPKPQAHM 203 (813)
Q Consensus 188 ------~~GkI~~~g~~~e~~~ 203 (813)
+.|+|++.|+|+++.+
T Consensus 898 GPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 898 GPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCceEEEecCHHHHHh
Confidence 3479999999988754
No 415
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.98 E-value=2.5e-09 Score=120.54 Aligned_cols=177 Identities=14% Similarity=0.145 Sum_probs=128.6
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeecc--------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~-------- 79 (813)
+.++++|++..=..+ ...+++|||++ ..|||++|.|-.|-|-+.|+.+|+|+.+ +.+|++.-..
T Consensus 256 ~vL~V~~L~v~~~~~--~~~v~~vs~~V--r~GEIvGIAGV~GNGQ~eL~eaisGlr~----~~~G~I~l~G~~v~~~~~ 327 (501)
T COG3845 256 VVLEVEDLSVKDRRG--VTAVKDVSFEV--RAGEIVGIAGVAGNGQSELVEAISGLRK----PASGRILLNGKDVLGRLS 327 (501)
T ss_pred eEEEEeeeEeecCCC--CceeeeeeeEE--ecCcEEEEEecCCCCHHHHHHHHhCCCc----cCCceEEECCEeccccCC
Confidence 479999999986542 57899999999 5899999999999999999999999997 6668732100
Q ss_pred -------c-eeccccc---CCCchhHHHHhhCCC----------c----cc---------------------cccchHHH
Q 003528 80 -------G-IWMARCA---GIEPCTLIMDLEGTD----------G----RE---------------------RGEDDTAF 113 (813)
Q Consensus 80 -------g-~~~~~~~---~~e~~~~vld~~g~~----------~----~e---------------------~~~~~~~~ 113 (813)
| .+.+... +.-..+.+.+|.-+. + .. .......+
T Consensus 328 ~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGG 407 (501)
T COG3845 328 PRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGG 407 (501)
T ss_pred HHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCc
Confidence 0 0111100 011111112221100 0 00 00000112
Q ss_pred HHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCC
Q 003528 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (813)
Q Consensus 114 erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~G 190 (813)
.+||+-+||-+. ++||+..||-|||... ...|.+.+.+..+. |+.||++|-|++++...++++.++.+ |
T Consensus 408 NqQK~IlaREl~~~p~lLI~~qPTrGLDvgA------~~~I~~~l~e~r~~-G~AVLLiS~dLDEil~lsDrIaVi~~-G 479 (501)
T COG3845 408 NQQKLILARELARRPDLLIAAQPTRGLDVGA------IEFIHERLLELRDA-GKAVLLISEDLDEILELSDRIAVIYE-G 479 (501)
T ss_pred ceehhhhhhhhccCCCEEEEcCCCccccHHH------HHHHHHHHHHHHhc-CCEEEEEehhHHHHHHhhheeeeeeC-C
Confidence 889999999999 9999999999999999 99999999999875 99999999999998877887777777 9
Q ss_pred eEEEecCccc
Q 003528 191 KIWDSVPKPQ 200 (813)
Q Consensus 191 kI~~~g~~~e 200 (813)
+|+...++.+
T Consensus 480 ri~~~~~~~~ 489 (501)
T COG3845 480 RIVGIVPPEE 489 (501)
T ss_pred ceeccccccc
Confidence 9998877654
No 416
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.96 E-value=1.4e-09 Score=139.64 Aligned_cols=82 Identities=15% Similarity=0.139 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHH------hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeee
Q 003528 114 EKQSALFALAVS------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE 187 (813)
Q Consensus 114 erQrv~iA~ALa------dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~ 187 (813)
|.||+-+|.-|. .++||||||.||++.. ...+++++.+|... |.|||+|.||++.+.. .|.++-+
T Consensus 1704 E~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d------~~~Ll~~l~~L~~~-g~tvivieH~~~~i~~--aD~iidl 1774 (1809)
T PRK00635 1704 EKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQ------KSALLVQLRTLVSL-GHSVIYIDHDPALLKQ--ADYLIEM 1774 (1809)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHH------HHHHHHHHHHHHhc-CCeEEEEeCCHHHHHh--CCEEEEc
Confidence 999999999998 4999999999999999 99999999999865 9999999999998873 4444333
Q ss_pred ------cCCeEEEecCcccccCC
Q 003528 188 ------DIQKIWDSVPKPQAHME 204 (813)
Q Consensus 188 ------~~GkI~~~g~~~e~~~~ 204 (813)
..|+|++.|+|.++.++
T Consensus 1775 gp~gG~~GG~iva~Gtp~~i~~~ 1797 (1809)
T PRK00635 1775 GPGSGKTGGKILFSGPPKDISAS 1797 (1809)
T ss_pred CCCcccCCCEEEEEeCHHHHhhC
Confidence 33799999999887643
No 417
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.96 E-value=2.6e-09 Score=115.21 Aligned_cols=67 Identities=13% Similarity=0.066 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHH------H-hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCccee
Q 003528 113 FEKQSALFALAV------S-DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVL 185 (813)
Q Consensus 113 ~erQrv~iA~AL------a-dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vl 185 (813)
+|+||+++|+++ . +++|+|||+++||+.. ...+.+.+.++.+ +.|+|++||++... ..+++.++
T Consensus 174 G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~------~~~l~~~l~~~~~--~~tii~isH~~~~~-~~~d~~~~ 244 (276)
T cd03241 174 GELSRLMLALKAILARKDAVPTLIFDEIDTGISGEV------AQAVGKKLKELSR--SHQVLCITHLPQVA-AMADNHFL 244 (276)
T ss_pred hHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHH------HHHHHHHHHHHhC--CCEEEEEechHHHH-HhcCcEEE
Confidence 499999999753 3 8999999999999999 9999999999853 68999999999854 45666666
Q ss_pred eec
Q 003528 186 RED 188 (813)
Q Consensus 186 l~~ 188 (813)
+.+
T Consensus 245 l~~ 247 (276)
T cd03241 245 VEK 247 (276)
T ss_pred EEE
Confidence 655
No 418
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.90 E-value=4.7e-09 Score=112.93 Aligned_cols=113 Identities=15% Similarity=0.169 Sum_probs=63.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccccCCC-chhHHHHhhCCCccccccc---hHHHHHH
Q 003528 41 AVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE-PCTLIMDLEGTDGRERGED---DTAFEKQ 116 (813)
Q Consensus 41 eivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~~~~e-~~~~vld~~g~~~~e~~~~---~~~~erQ 116 (813)
.-++|+||||||||||++.|+|+.. |.+|+..- .|.-+. ..+ ........-+.+....+.+ .....+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~-~g~~v~---~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~ 183 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS----TGISQLGL-RGKKVG---IVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKA 183 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEE-CCEEee---cchhHHHHHHHhcccccccccccccccccchHH
Confidence 5689999999999999999999998 88887321 111010 000 0111111112221111111 1112233
Q ss_pred HHHHHHHH--H-hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCC
Q 003528 117 SALFALAV--S-DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR 175 (813)
Q Consensus 117 rv~iA~AL--a-dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~ 175 (813)
...+..+. . +++|+|||.. .+.+..++..+. .|.++|+++|+...
T Consensus 184 ~~~~~~i~~~~P~villDE~~~------------~e~~~~l~~~~~--~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 184 EGMMMLIRSMSPDVIVVDEIGR------------EEDVEALLEALH--AGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHHHHhCCCCEEEEeCCCc------------HHHHHHHHHHHh--CCCEEEEEechhHH
Confidence 33333333 3 9999999853 334444555543 38999999998754
No 419
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.89 E-value=1.6e-09 Score=131.71 Aligned_cols=130 Identities=13% Similarity=0.113 Sum_probs=78.3
Q ss_pred cceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeec-cceecccccCCCchhHHHHhhCCCc--cccc
Q 003528 31 VKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT-KGIWMARCAGIEPCTLIMDLEGTDG--RERG 107 (813)
Q Consensus 31 vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~-~g~~~~~~~~~e~~~~vld~~g~~~--~e~~ 107 (813)
+++.+. ...++++|.||||+||||||++|+|... -+..|-.... .+..++. ++... ...|... ....
T Consensus 314 ~di~l~-~~~~~liItGpNg~GKSTlLK~i~~~~l---~aq~G~~Vpa~~~~~~~~---~d~i~---~~i~~~~si~~~L 383 (771)
T TIGR01069 314 FTLNLK-FEKRVLAITGPNTGGKTVTLKTLGLLAL---MFQSGIPIPANEHSEIPY---FEEIF---ADIGDEQSIEQNL 383 (771)
T ss_pred ceeEeC-CCceEEEEECCCCCCchHHHHHHHHHHH---HHHhCCCccCCccccccc---hhhee---eecChHhHHhhhh
Confidence 577774 2348999999999999999999999831 0344421000 0000000 00000 0001000 0000
Q ss_pred cchHHHHHHHHHHHHHHH--hHhhhccCCCCCCchhhcChhhHHHHH-HHHHHhhcCCCceEEEEeecCCCcc
Q 003528 108 EDDTAFEKQSALFALAVS--DIVLINMWCHDIGREQAANKPLLKTVF-QVMMRLFSPRKTTLMFVIRDKTRTP 177 (813)
Q Consensus 108 ~~~~~~erQrv~iA~ALa--dvLLLDEPtsgLD~~~~a~~~l~~~v~-ell~~L~~~~g~TIL~VtHD~~~~~ 177 (813)
......+++++.|+.++. .++|+|||++|+|+.. ...+. .++..+.+ .|.++|++||+.+...
T Consensus 384 StfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~e------g~ala~aiLe~l~~-~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 384 STFSGHMKNISAILSKTTENSLVLFDELGAGTDPDE------GSALAISILEYLLK-QNAQVLITTHYKELKA 449 (771)
T ss_pred hHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHH------HHHHHHHHHHHHHh-cCCEEEEECChHHHHH
Confidence 111223777777777655 9999999999999998 66663 45555544 5899999999987643
No 420
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.85 E-value=4.7e-09 Score=129.22 Aligned_cols=167 Identities=16% Similarity=0.144 Sum_probs=116.1
Q ss_pred cceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccc------------ee-------ccc
Q 003528 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------------IW-------MAR 85 (813)
Q Consensus 25 ~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g------------~~-------~~~ 85 (813)
..+|++++.-+ .+|+.+.++||.||||||||++|+|-...... ..|+. +..| ++ ++.
T Consensus 128 ~~il~~~sg~~--~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~-~~~~i-sy~G~~~~e~~~~~~~aY~~e~DvH~p~ 203 (1391)
T KOG0065|consen 128 IQILKDISGII--KPGEMTLVLGPPGSGKTTLLKALAGKLDNFLK-SSGEI-TYNGHDLKEFVPKKTVAYNSEQDVHFPE 203 (1391)
T ss_pred ceeecCcceeE--cCCceEEEecCCCCchHHHHHHHhCCCccccc-CCCce-eECCCcccccccCceEEeccccccccce
Confidence 46899999999 58999999999999999999999998753222 22321 1111 11 111
Q ss_pred ccCCCchhHHHHhhCC----Ccccccc-----------------------------chHHHHHHHHHHHHHHH---hHhh
Q 003528 86 CAGIEPCTLIMDLEGT----DGRERGE-----------------------------DDTAFEKQSALFALAVS---DIVL 129 (813)
Q Consensus 86 ~~~~e~~~~vld~~g~----~~~e~~~-----------------------------~~~~~erQrv~iA~ALa---dvLL 129 (813)
.+..+..-++....+- +..+|.+ .+..+||+||.+|-.++ .++.
T Consensus 204 lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~ 283 (1391)
T KOG0065|consen 204 LTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILF 283 (1391)
T ss_pred eEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceee
Confidence 1222333333332221 1111111 11112999999999999 9999
Q ss_pred hccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCC-CcccccCcceeeecCCeEEEecCccccc
Q 003528 130 INMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT-RTPLENLEPVLREDIQKIWDSVPKPQAH 202 (813)
Q Consensus 130 LDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~-~~~~~~~~~vll~~~GkI~~~g~~~e~~ 202 (813)
+||+|.|||..+ .-++.+.++++....+.|.+++.+... .+-...++++++.+ |+++..|+..+..
T Consensus 284 ~De~t~GLDSsT------al~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 284 WDEITRGLDSST------AFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPRDEVL 350 (1391)
T ss_pred eecccccccHHH------HHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccHHHHH
Confidence 999999999999 888889999988878999999999994 45444556666655 9999999887653
No 421
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.82 E-value=3.8e-09 Score=110.26 Aligned_cols=137 Identities=17% Similarity=0.188 Sum_probs=78.9
Q ss_pred cceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccccCCCchhHHHHhhCCCcc
Q 003528 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGR 104 (813)
Q Consensus 25 ~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~~~~e~~~~vld~~g~~~~ 104 (813)
..+-++++|.. .++++++|.||||+|||||++.+.+... | ...|-.......-++. .+.+..- .+...
T Consensus 17 ~~v~ndi~l~~--~~~~~~~itG~n~~gKs~~l~~i~~~~~--l-a~~G~~vpa~~~~i~~---~~~i~~~---~~~~d- 84 (218)
T cd03286 17 SFVPNDVDLGA--TSPRILVLTGPNMGGKSTLLRTVCLAVI--M-AQMGMDVPAKSMRLSL---VDRIFTR---IGARD- 84 (218)
T ss_pred CeEEeeeEEee--cCCcEEEEECCCCCchHHHHHHHHHHHH--H-HHcCCccCccccEecc---ccEEEEe---cCccc-
Confidence 46788999998 4689999999999999999999998743 1 1123211000000000 0111000 01110
Q ss_pred ccccchHHH--HHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHH-HHHhhcCCCceEEEEeecCCCccc
Q 003528 105 ERGEDDTAF--EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQV-MMRLFSPRKTTLMFVIRDKTRTPL 178 (813)
Q Consensus 105 e~~~~~~~~--erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~el-l~~L~~~~g~TIL~VtHD~~~~~~ 178 (813)
........| |-+++.-....+ .++|+|||..|.++.. ...+... +..+.+..+.++|++||+++.+..
T Consensus 85 ~~~~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~d------g~~la~ail~~L~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 85 DIMKGESTFMVELSETANILRHATPDSLVILDELGRGTSTHD------GYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred ccccCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchH------HHHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 011111233 333332222222 8999999999999887 4455554 344433238899999999987654
Q ss_pred c
Q 003528 179 E 179 (813)
Q Consensus 179 ~ 179 (813)
.
T Consensus 159 ~ 159 (218)
T cd03286 159 F 159 (218)
T ss_pred h
Confidence 3
No 422
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.81 E-value=1.7e-08 Score=108.64 Aligned_cols=68 Identities=9% Similarity=0.140 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHH------------hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCccccc-
Q 003528 114 EKQSALFALAVS------------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN- 180 (813)
Q Consensus 114 erQrv~iA~ALa------------dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~- 180 (813)
|+|++.+|++++ +++|+|||+++||+.. ...+++.+.++. .+++++|+...+...+
T Consensus 188 q~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~------~~~l~~~l~~~~-----q~ii~~~~~~~~~~~~~ 256 (270)
T cd03242 188 QQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGR------QAALLDAIEGRV-----QTFVTTTDLADFDALWL 256 (270)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHH------HHHHHHHhhcCC-----CEEEEeCCchhccchhc
Confidence 999999999973 8999999999999999 888888887652 4666777665554433
Q ss_pred -CcceeeecCCeE
Q 003528 181 -LEPVLREDIQKI 192 (813)
Q Consensus 181 -~~~vll~~~GkI 192 (813)
...++..++|+|
T Consensus 257 ~~~~i~~l~~g~i 269 (270)
T cd03242 257 RRAQIFRVDAGTL 269 (270)
T ss_pred cCccEEEEeCcEE
Confidence 223444455775
No 423
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.76 E-value=3.4e-08 Score=99.23 Aligned_cols=141 Identities=16% Similarity=0.199 Sum_probs=82.3
Q ss_pred cceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHH-cCCCCCCCCCCCee------e-----------------eccc
Q 003528 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLF-GTNFREMDAFKGRS------Q-----------------TTKG 80 (813)
Q Consensus 25 ~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~-Gl~~~~m~p~sG~~------q-----------------~~~g 80 (813)
.++++.+-..+. ++-.|+.|+|.|||||||||..|+ |.-+ ++..|.. . ...|
T Consensus 23 lPa~r~l~~~Le-F~apIT~i~GENGsGKSTLLEaiA~~~~~---n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g 98 (233)
T COG3910 23 LPAFRHLEERLE-FRAPITFITGENGSGKSTLLEAIAAGMGF---NAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIG 98 (233)
T ss_pred chHHHhhhhhcc-ccCceEEEEcCCCccHHHHHHHHHhhccc---cccCCCcCcCcccccccchHHHhHHHhhcCCCCcc
Confidence 355555543443 478899999999999999999987 3333 2333331 0 0011
Q ss_pred eecccccCCCchhHHHHhhCCCccccccch---HHHHHHHHHHHHHHH--hHhhhccCCCCCCchhhcChhhHHHHHHHH
Q 003528 81 IWMARCAGIEPCTLIMDLEGTDGRERGEDD---TAFEKQSALFALAVS--DIVLINMWCHDIGREQAANKPLLKTVFQVM 155 (813)
Q Consensus 81 ~~~~~~~~~e~~~~vld~~g~~~~e~~~~~---~~~erQrv~iA~ALa--dvLLLDEPtsgLD~~~~a~~~l~~~v~ell 155 (813)
.++ +.....++...+|-..-...-..... ..+|--...|...+- -+.|||||.++|-|.- +-.++..|
T Consensus 99 ~Fl-RAEs~yn~as~~De~~~e~~~~~~sLh~~SHGEsf~~i~~~rf~~~GiYiLDEPEa~LSp~R------Qlella~l 171 (233)
T COG3910 99 FFL-RAESFYNVASYLDEADGEANYGGRSLHHMSHGESFLAIFHNRFNGQGIYILDEPEAALSPSR------QLELLAIL 171 (233)
T ss_pred eEE-ehhHHHHHHHHHHhhhhhcccCCcchhhhccchHHHHHHHHHhccCceEEecCccccCCHHH------HHHHHHHH
Confidence 111 11111122222221100000001111 111333334444455 8999999999999998 88999999
Q ss_pred HHhhcCCCceEEEEeecCCCcc
Q 003528 156 MRLFSPRKTTLMFVIRDKTRTP 177 (813)
Q Consensus 156 ~~L~~~~g~TIL~VtHD~~~~~ 177 (813)
.++.+. |.-+||+||.+-...
T Consensus 172 ~~la~s-GaQ~IiATHSPiLlA 192 (233)
T COG3910 172 RDLADS-GAQIIIATHSPILLA 192 (233)
T ss_pred HHHHhc-CCeEEEEecChhhee
Confidence 999875 899999999986544
No 424
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.76 E-value=1e-08 Score=113.36 Aligned_cols=136 Identities=18% Similarity=0.133 Sum_probs=89.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee--ccceecccccC-----------------CCchhHHHHhh
Q 003528 39 SYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT--TKGIWMARCAG-----------------IEPCTLIMDLE 99 (813)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~--~~g~~~~~~~~-----------------~e~~~~vld~~ 99 (813)
+.+++..+|.||.|||||+++++|.+. |+.|.-.. ....+.+.... ..+..|+-|+.
T Consensus 366 dSeiivmlgEngtgkTTfi~mlag~~~----pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvm 441 (592)
T KOG0063|consen 366 DSEIIVMLGENGTGKTTFIRMLAGRLK----PDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVM 441 (592)
T ss_pred CceeEEEEccCCcchhHHHHHHhcCCC----CCccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhh
Confidence 357899999999999999999999887 77775111 11122221110 12233333322
Q ss_pred CCCccc--cc---cchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEee
Q 003528 100 GTDGRE--RG---EDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIR 171 (813)
Q Consensus 100 g~~~~e--~~---~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtH 171 (813)
.--.-+ .. ......|.|||++|++|. ++.++|||.+-||.++ +...-.++++..-..++|-.+|.|
T Consensus 442 kpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQ------Ri~AskvikRfilhakktafvVEh 515 (592)
T KOG0063|consen 442 KPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQ------RIIASKVIKRFILHAKKTAFVVEH 515 (592)
T ss_pred hhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHH------HHHHHHHHHHHHHhccchhhhhhh
Confidence 100000 00 111224999999999998 9999999999999998 777777777766566889999999
Q ss_pred cCCCcccccCcce
Q 003528 172 DKTRTPLENLEPV 184 (813)
Q Consensus 172 D~~~~~~~~~~~v 184 (813)
|+-.+...+++++
T Consensus 516 dfImaTYladrvi 528 (592)
T KOG0063|consen 516 DFIMATYLADRVI 528 (592)
T ss_pred HHHHHHhhcceeE
Confidence 9866554444443
No 425
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.73 E-value=5.9e-08 Score=110.90 Aligned_cols=154 Identities=16% Similarity=0.054 Sum_probs=92.6
Q ss_pred cceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccccCCCchhHHHHhhCCCcc
Q 003528 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGR 104 (813)
Q Consensus 25 ~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~~~~e~~~~vld~~g~~~~ 104 (813)
..+++++ |.+ .+|++++|+|+||+|||||+++|+|... +..|.+. ..| . .+.+-..++.+..+....
T Consensus 146 ~~vid~l-~~i--~~Gq~i~I~G~sG~GKStLl~~I~~~~~----~~~gvI~-~~G----e-rg~ev~e~~~~~l~~~~l 212 (438)
T PRK07721 146 VRAIDSL-LTV--GKGQRVGIFAGSGVGKSTLMGMIARNTS----ADLNVIA-LIG----E-RGREVREFIERDLGPEGL 212 (438)
T ss_pred hhhhhee-eee--cCCcEEEEECCCCCCHHHHHHHHhcccC----CCeEEEE-EEe----c-CCccHHHHHHhhcChhhh
Confidence 5689999 999 5899999999999999999999999986 6666521 000 0 000000010000000000
Q ss_pred c------cccchHHHHHHHH--------------------------HHHHHHHhH-hhhccC--CCCCCchhhcChhhHH
Q 003528 105 E------RGEDDTAFEKQSA--------------------------LFALAVSDI-VLINMW--CHDIGREQAANKPLLK 149 (813)
Q Consensus 105 e------~~~~~~~~erQrv--------------------------~iA~ALadv-LLLDEP--tsgLD~~~~a~~~l~~ 149 (813)
. ...+....+|-++ -+|+|+-+| +.+.|| +.|+|+.. ..
T Consensus 213 ~r~v~vv~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~------~~ 286 (438)
T PRK07721 213 KRSIVVVATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSV------FA 286 (438)
T ss_pred cCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHH------HH
Confidence 0 0000011122221 233333333 335686 57899888 88
Q ss_pred HHHHHHHHhhc-CCCc-----eEEEEeecCCCcccccCcceeeecCCeEEEecCccc
Q 003528 150 TVFQVMMRLFS-PRKT-----TLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (813)
Q Consensus 150 ~v~ell~~L~~-~~g~-----TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g~~~e 200 (813)
.+.+++.++.. ..|. ||++.+||++. ..+++...+.+ |+|+.++...+
T Consensus 287 ~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~d-G~Ivls~~la~ 340 (438)
T PRK07721 287 ILPKLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILD-GHFVLDRQLAN 340 (438)
T ss_pred HHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecC-EEEEEeccHHH
Confidence 88899988864 3475 99999999985 23555555555 99999886543
No 426
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.70 E-value=7e-08 Score=100.12 Aligned_cols=58 Identities=10% Similarity=0.161 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHH-------hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcc
Q 003528 112 AFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (813)
Q Consensus 112 ~~erQrv~iA~ALa-------dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~ 177 (813)
.+||.++++|.-+| +++||||+.++||... ...+.++|.++.+ +.-+|++||+.....
T Consensus 139 gGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~------~~~l~~~l~~~~~--~~Q~ii~Th~~~~~~ 203 (220)
T PF02463_consen 139 GGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQN------RKRLADLLKELSK--QSQFIITTHNPEMFE 203 (220)
T ss_dssp HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHH------HHHHHHHHHHHTT--TSEEEEE-S-HHHHT
T ss_pred ccccccccccccccccccccccccccccccccccccc------ccccccccccccc--ccccccccccccccc
Confidence 45999999998887 8999999999999999 9999999999864 478999999987665
No 427
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.68 E-value=1.8e-08 Score=124.33 Aligned_cols=85 Identities=12% Similarity=0.013 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHH-----hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCccee
Q 003528 111 TAFEKQSALFALAVS-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVL 185 (813)
Q Consensus 111 ~~~erQrv~iA~ALa-----dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vl 185 (813)
..+|+||+.||++|+ +++||||||+|||+.. ...++++|.++.+ .|.|||+|+||++++. .++++++
T Consensus 491 SgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~------~~~L~~~L~~L~~-~G~TVIvVeH~~~~i~-~aD~vi~ 562 (943)
T PRK00349 491 SGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRD------NDRLIETLKHLRD-LGNTLIVVEHDEDTIR-AADYIVD 562 (943)
T ss_pred CHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHH------HHHHHHHHHHHHh-CCCEEEEEeCCHHHHH-hCCEEEE
Confidence 345999999999998 5899999999999999 9999999999976 4999999999998876 3555555
Q ss_pred ee-----cCCeEEEecCcccccC
Q 003528 186 RE-----DIQKIWDSVPKPQAHM 203 (813)
Q Consensus 186 l~-----~~GkI~~~g~~~e~~~ 203 (813)
+- ++|+|+..|++.++..
T Consensus 563 LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 563 IGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred eccccCCCCCEEeeccCHHHHhc
Confidence 50 5599999998877643
No 428
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.67 E-value=1.2e-08 Score=124.47 Aligned_cols=131 Identities=15% Similarity=0.099 Sum_probs=78.7
Q ss_pred ceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeecc-ceecccccCCCchhHHHHhhCCC-ccc-ccc
Q 003528 32 KLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-GIWMARCAGIEPCTLIMDLEGTD-GRE-RGE 108 (813)
Q Consensus 32 sl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~-g~~~~~~~~~e~~~~vld~~g~~-~~e-~~~ 108 (813)
++.+. ..+.++.|.|||++||||+|+.+..... | ...|-+.... +..+ ..++.+.. -.|.. ..+ ...
T Consensus 320 di~l~-~~~~~~iITGpN~gGKTt~lktigl~~~--m-aq~G~~vpa~~~~~i---~~~~~i~~---~ig~~~si~~~lS 389 (782)
T PRK00409 320 DISLG-FDKTVLVITGPNTGGKTVTLKTLGLAAL--M-AKSGLPIPANEPSEI---PVFKEIFA---DIGDEQSIEQSLS 389 (782)
T ss_pred eeEEC-CCceEEEEECCCCCCcHHHHHHHHHHHH--H-HHhCCCcccCCCccc---cccceEEE---ecCCccchhhchh
Confidence 44553 3578999999999999999999865422 1 2223211000 0000 00011110 01111 000 111
Q ss_pred chHHHHHHHHHHHHHHH--hHhhhccCCCCCCchhhcChhhHHHHHH-HHHHhhcCCCceEEEEeecCCCcccc
Q 003528 109 DDTAFEKQSALFALAVS--DIVLINMWCHDIGREQAANKPLLKTVFQ-VMMRLFSPRKTTLMFVIRDKTRTPLE 179 (813)
Q Consensus 109 ~~~~~erQrv~iA~ALa--dvLLLDEPtsgLD~~~~a~~~l~~~v~e-ll~~L~~~~g~TIL~VtHD~~~~~~~ 179 (813)
.....+++++.|++++. .++|+|||++|+|+.. ...+.. ++..+.+ .|.++|++||+.+.....
T Consensus 390 tfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~e------g~ala~aile~l~~-~~~~vIitTH~~el~~~~ 456 (782)
T PRK00409 390 TFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDE------GAALAISILEYLRK-RGAKIIATTHYKELKALM 456 (782)
T ss_pred HHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHH------HHHHHHHHHHHHHH-CCCEEEEECChHHHHHHH
Confidence 22334889999988877 9999999999999987 666654 4444444 489999999998876543
No 429
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.66 E-value=2.4e-08 Score=123.04 Aligned_cols=85 Identities=11% Similarity=0.008 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHHHH-----hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcce
Q 003528 110 DTAFEKQSALFALAVS-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPV 184 (813)
Q Consensus 110 ~~~~erQrv~iA~ALa-----dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~v 184 (813)
...+|+||+.||++|+ +++||||||+|||+.. ...++++++++.++ |.|||+|+||++.+. .+++++
T Consensus 488 LSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~------~~~L~~~L~~L~~~-G~TVIvVeHd~~~i~-~aD~vi 559 (924)
T TIGR00630 488 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRD------NERLINTLKRLRDL-GNTVIVVEHDEETIR-AADYVI 559 (924)
T ss_pred CCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHH------HHHHHHHHHHHHhC-CCEEEEEECCHHHHh-hCCEEE
Confidence 3456999999999998 4999999999999999 99999999999765 999999999998876 455555
Q ss_pred eee-----cCCeEEEecCccccc
Q 003528 185 LRE-----DIQKIWDSVPKPQAH 202 (813)
Q Consensus 185 ll~-----~~GkI~~~g~~~e~~ 202 (813)
++- ++|+|+..|++.++.
T Consensus 560 ~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 560 DIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred EecccccCCCCEEeeccCHHHHh
Confidence 551 559999999887754
No 430
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.42 E-value=5e-07 Score=93.42 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHH---hHhhhccCC-----CCCCchhhcChhhHHHHHHHHHHhhc
Q 003528 114 EKQSALFALAVS---DIVLINMWC-----HDIGREQAANKPLLKTVFQVMMRLFS 160 (813)
Q Consensus 114 erQrv~iA~ALa---dvLLLDEPt-----sgLD~~~~a~~~l~~~v~ell~~L~~ 160 (813)
+++++.||++++ +++++|||| ++||+.. .+.+.+.+.+++.
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~------~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPEL------VAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHH------HHHHHHHHHHHhh
Confidence 888899999999 999999999 9999999 9999999999864
No 431
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.40 E-value=5.6e-07 Score=94.82 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=24.9
Q ss_pred cCCcEEEEEcCCCCcHHHH-HHHHHcCCC
Q 003528 38 LSYAVVSIMGPQSSGKSTL-LNHLFGTNF 65 (813)
Q Consensus 38 ~~GeivaIiGpNGSGKSTL-Ln~L~Gl~~ 65 (813)
.+|+++.|+|++||||||| ++.++|...
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~ 50 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQ 50 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4799999999999999999 788998754
No 432
>PRK00064 recF recombination protein F; Reviewed
Probab=98.34 E-value=2.3e-06 Score=96.09 Aligned_cols=69 Identities=13% Similarity=0.189 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHH------------hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCccccc-
Q 003528 114 EKQSALFALAVS------------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN- 180 (813)
Q Consensus 114 erQrv~iA~ALa------------dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~- 180 (813)
|++++.+|+.++ +|+|||||+++||+.. +..+++.+.++ +..+++++|+.+.....+
T Consensus 278 q~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~------~~~l~~~l~~~----~~qv~it~~~~~~~~~~~~ 347 (361)
T PRK00064 278 QQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGR------RAALLERLKGL----GAQVFITTTDLEDLADLLE 347 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHH------HHHHHHHHhcc----CCEEEEEcCChhhhhhhhc
Confidence 999999999884 8999999999999998 88888888764 347899999986554332
Q ss_pred CcceeeecCCeE
Q 003528 181 LEPVLREDIQKI 192 (813)
Q Consensus 181 ~~~vll~~~GkI 192 (813)
...++..+.|+|
T Consensus 348 ~~~i~~v~~G~i 359 (361)
T PRK00064 348 NAKIFHVEQGKI 359 (361)
T ss_pred cCcEEEEeCCEE
Confidence 223444454776
No 433
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.32 E-value=5.2e-07 Score=91.90 Aligned_cols=56 Identities=11% Similarity=0.092 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHH------hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCC
Q 003528 113 FEKQSALFALAVS------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR 175 (813)
Q Consensus 113 ~erQrv~iA~ALa------dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~ 175 (813)
++++.+.++..+. .++++|||.++|.|.. ++.+++.+.++.+ .+.-+|++||.+..
T Consensus 240 G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~------q~~l~~~l~~~~~-~~~QviitTHSp~i 301 (303)
T PF13304_consen 240 GEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSW------QRKLIELLKELSK-KNIQVIITTHSPFI 301 (303)
T ss_dssp HHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHH------HHHHHHHHHHTGG-GSSEEEEEES-GGG
T ss_pred HHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHH------HHHHHHHHHhhCc-cCCEEEEeCccchh
Confidence 4788877777776 6799999999999998 9999999988876 47899999998754
No 434
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.32 E-value=5e-07 Score=100.25 Aligned_cols=142 Identities=18% Similarity=0.144 Sum_probs=91.0
Q ss_pred ceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeee------c----cce----eccccc-----CCCch
Q 003528 32 KLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------T----KGI----WMARCA-----GIEPC 92 (813)
Q Consensus 32 sl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~------~----~g~----~~~~~~-----~~e~~ 92 (813)
.|.+. ..|++.+++|.||-||||-|++|+|-++ |.-|+... . +|. ++.+.. .....
T Consensus 93 rlp~p-rpg~vlglvgtngigkstAlkilagk~k----pnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kp 167 (592)
T KOG0063|consen 93 RLPIP-RPGQVLGLVGTNGIGKSTALKILAGKQK----PNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKP 167 (592)
T ss_pred cCCCC-CcchhccccccCcccHHHHHHHHhCCCC----CCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCCh
Confidence 44555 4899999999999999999999999998 77777211 0 110 111100 00000
Q ss_pred hHH-----------HHhhCCCcccccc-------------------chHHHHHHHHHHHHHHH---hHhhhccCCCCCCc
Q 003528 93 TLI-----------MDLEGTDGRERGE-------------------DDTAFEKQSALFALAVS---DIVLINMWCHDIGR 139 (813)
Q Consensus 93 ~~v-----------ld~~g~~~~e~~~-------------------~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~ 139 (813)
..+ -.+++. ..++.. .....|-||.+||++.. |+.++|||.+.||.
T Consensus 168 Qyvd~ipr~~k~~v~~~l~~-~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDV 246 (592)
T KOG0063|consen 168 QYVDQIPRAVKGTVGSLLDR-KDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDV 246 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchH
Confidence 011 001100 001100 00112789999998888 99999999999999
Q ss_pred hhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceee
Q 003528 140 EQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 186 (813)
Q Consensus 140 ~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll 186 (813)
.+ +-.--..++.+... ..-||+|.||++......+-..++
T Consensus 247 KQ------RLkaA~~IRsl~~p-~~YiIVVEHDLsVLDylSDFiCcL 286 (592)
T KOG0063|consen 247 KQ------RLKAAITIRSLINP-DRYIIVVEHDLSVLDYLSDFICCL 286 (592)
T ss_pred HH------hhhHHHHHHHhhCC-CCeEEEEEeechHHHhhhcceeEE
Confidence 98 77777788888764 778999999998876544434333
No 435
>PRK13695 putative NTPase; Provisional
Probab=98.28 E-value=5e-07 Score=90.63 Aligned_cols=134 Identities=13% Similarity=0.179 Sum_probs=70.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccc------cCCC--c----hhHHHHhhCC-Cccc---
Q 003528 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC------AGIE--P----CTLIMDLEGT-DGRE--- 105 (813)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~------~~~e--~----~~~vld~~g~-~~~e--- 105 (813)
.++|.|++|||||||++.|.+... + .|. ...+.+.+.. .+.. . ....+...+. ....
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~----~-~G~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 74 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK----E-EGY--KVGGFYTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRVGK 74 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH----H-CCC--eEEEEEcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCceee
Confidence 478999999999999999887653 2 232 1111111100 0000 0 0000000111 1110
Q ss_pred cccchHHHHHHHHHHHHHHH---hHhhhccC--CCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCccccc
Q 003528 106 RGEDDTAFEKQSALFALAVS---DIVLINMW--CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN 180 (813)
Q Consensus 106 ~~~~~~~~erQrv~iA~ALa---dvLLLDEP--tsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~ 180 (813)
.......+++-+..++.... +++|+||| +..+|+. +.+.+.++.+ .+.++|+|+|+..... .+
T Consensus 75 ~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~----------~~~~l~~~~~-~~~~~i~v~h~~~~~~-~~ 142 (174)
T PRK13695 75 YVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPK----------FVKAVEEVLD-SEKPVIATLHRRSVHP-FV 142 (174)
T ss_pred EEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHH----------HHHHHHHHHh-CCCeEEEEECchhhHH-HH
Confidence 11122345666666665553 99999994 4444432 4455555553 4889999999964333 23
Q ss_pred CcceeeecCCeEEEe
Q 003528 181 LEPVLREDIQKIWDS 195 (813)
Q Consensus 181 ~~~vll~~~GkI~~~ 195 (813)
++...+.+ |+|..-
T Consensus 143 ~~i~~~~~-~~i~~~ 156 (174)
T PRK13695 143 QEIKSRPG-GRVYEL 156 (174)
T ss_pred HHHhccCC-cEEEEE
Confidence 44444444 887554
No 436
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.17 E-value=3.2e-06 Score=81.73 Aligned_cols=124 Identities=17% Similarity=0.179 Sum_probs=62.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccccCCCchhHH---HHhhCCCc------cccccchHH
Q 003528 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLI---MDLEGTDG------RERGEDDTA 112 (813)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~~~~e~~~~v---ld~~g~~~------~e~~~~~~~ 112 (813)
++.|.|++|+|||||++.+++... +..|.. .++............ ....+... ...... ..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~----~~~~~v-----~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 70 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA----TKGGKV-----VYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDP-AA 70 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH----hcCCEE-----EEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCC-cH
Confidence 478999999999999999998875 333331 111111110001000 00000000 000000 11
Q ss_pred HHHHHHHHHHHHH---hHhhhccCCCCCCchhh---cChhh-HHHHHHHHHHhhcCCCceEEEEeecCCCc
Q 003528 113 FEKQSALFALAVS---DIVLINMWCHDIGREQA---ANKPL-LKTVFQVMMRLFSPRKTTLMFVIRDKTRT 176 (813)
Q Consensus 113 ~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~---a~~~l-~~~v~ell~~L~~~~g~TIL~VtHD~~~~ 176 (813)
...+++..+.+.. +++++||++.-++.... ..+.. ...+.+++... ++.+.|+|+++|.....
T Consensus 71 ~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 71 ARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA-RKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-hcCCceEEEEEecCCcc
Confidence 1223344454444 89999999864443221 01111 34444444444 44599999999998543
No 437
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.17 E-value=1.8e-06 Score=80.29 Aligned_cols=35 Identities=23% Similarity=0.202 Sum_probs=32.4
Q ss_pred cceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHH
Q 003528 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLF 61 (813)
Q Consensus 25 ~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~ 61 (813)
..+|++++|.+ .+|++++|+||||||||||++++.
T Consensus 2 ~~aL~~vsl~i--~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 2 TTSLHGVLVDV--YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred ceEEEeeEEEE--cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 46899999999 479999999999999999999986
No 438
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.12 E-value=1.3e-06 Score=95.83 Aligned_cols=151 Identities=13% Similarity=0.097 Sum_probs=83.0
Q ss_pred ceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeee--eccceecccccCCCchhHHHHhhCCCccccccc
Q 003528 32 KLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ--TTKGIWMARCAGIEPCTLIMDLEGTDGRERGED 109 (813)
Q Consensus 32 sl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q--~~~g~~~~~~~~~e~~~~vld~~g~~~~e~~~~ 109 (813)
++.+ ..|..++|.||+|||||||+++|+|..+ +..|... ......+... ....+... ....+.
T Consensus 138 ~~~v--~~~~~ili~G~tGsGKTTll~al~~~~~----~~~~iv~ied~~El~~~~~---~~~~l~~~-----~~~~~~- 202 (308)
T TIGR02788 138 RLAI--ASRKNIIISGGTGSGKTTFLKSLVDEIP----KDERIITIEDTREIFLPHP---NYVHLFYS-----KGGQGL- 202 (308)
T ss_pred HHHh--hCCCEEEEECCCCCCHHHHHHHHHccCC----ccccEEEEcCccccCCCCC---CEEEEEec-----CCCCCc-
Confidence 4455 3689999999999999999999999986 5444310 0000000000 00000000 000000
Q ss_pred hHHHHHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceee
Q 003528 110 DTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 186 (813)
Q Consensus 110 ~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll 186 (813)
... ...-+++.+|- +++++|||.+ . .+++++..+.. .+.+++.++|..+... ..+++..
T Consensus 203 -~~~-~~~~~l~~~Lr~~pd~ii~gE~r~----~---------e~~~~l~a~~~-g~~~~i~T~Ha~~~~~--~~~Rl~~ 264 (308)
T TIGR02788 203 -AKV-TPKDLLQSCLRMRPDRIILGELRG----D---------EAFDFIRAVNT-GHPGSITTLHAGSPEE--AFEQLAL 264 (308)
T ss_pred -Ccc-CHHHHHHHHhcCCCCeEEEeccCC----H---------HHHHHHHHHhc-CCCeEEEEEeCCCHHH--HHHHHHH
Confidence 000 01113333444 9999999985 1 24555555542 2345799999998544 3444444
Q ss_pred ecCCeEEEecCcccccCCccchhhhccccc
Q 003528 187 EDIQKIWDSVPKPQAHMETPLSEFFNVEVV 216 (813)
Q Consensus 187 ~~~GkI~~~g~~~e~~~~~~l~d~f~~~~~ 216 (813)
+..|++...|.+.+.+ ...+...|++.++
T Consensus 265 l~~~~~~~~g~~~~~~-~~~i~~~~d~ii~ 293 (308)
T TIGR02788 265 MVKSSQAGLGLDFAYI-VKLVREVIDIVVQ 293 (308)
T ss_pred HhhccccccCCCHHHH-HHHHHHhCCEEEE
Confidence 4448888777777766 3455566665443
No 439
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.09 E-value=4e-06 Score=84.21 Aligned_cols=43 Identities=9% Similarity=-0.008 Sum_probs=34.9
Q ss_pred hHhhhccCCCCCC---chhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCC
Q 003528 126 DIVLINMWCHDIG---REQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR 175 (813)
Q Consensus 126 dvLLLDEPtsgLD---~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~ 175 (813)
+++++|+|++.+| ... ...+.+++..+.+. |.|+|+++|+...
T Consensus 97 ~~lviD~~~~~~~~~~~~~------~~~i~~l~~~l~~~-g~tvi~v~~~~~~ 142 (187)
T cd01124 97 KRVVIDSVSGLLLMEQSTA------RLEIRRLLFALKRF-GVTTLLTSEQSGL 142 (187)
T ss_pred CEEEEeCcHHHhhcChHHH------HHHHHHHHHHHHHC-CCEEEEEeccccC
Confidence 8999999999998 443 66677777777654 8999999998864
No 440
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.07 E-value=2e-06 Score=98.15 Aligned_cols=42 Identities=19% Similarity=0.239 Sum_probs=36.5
Q ss_pred ccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCC
Q 003528 24 IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (813)
Q Consensus 24 ~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG 73 (813)
...+|++||+++ .+|++++|+|||||||||||+ .|+.. |++|
T Consensus 18 l~~vL~~Vsl~i--~~GEiv~L~G~SGsGKSTLLr--~~l~~----~~sG 59 (504)
T TIGR03238 18 LERILVKFNKEL--PSSSLLFLCGSSGDGKSEILA--ENKRK----FSEG 59 (504)
T ss_pred HHHHHhCCceee--cCCCEEEEECCCCCCHHHHHh--cCCCC----CCCC
Confidence 346899999999 589999999999999999999 67765 6666
No 441
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.98 E-value=2.5e-05 Score=89.73 Aligned_cols=38 Identities=24% Similarity=0.171 Sum_probs=34.8
Q ss_pred cceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003528 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNF 65 (813)
Q Consensus 25 ~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~ 65 (813)
..+++.+ +.+ .+|++++|+|+||+|||||+++|+|...
T Consensus 151 i~~iD~l-~~i--~~Gq~~~I~G~sG~GKStLl~~I~~~~~ 188 (440)
T TIGR01026 151 VRSIDGL-LTV--GKGQRIGIFAGSGVGKSTLLGMIARNTE 188 (440)
T ss_pred eeeeeec-ccc--CCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5789988 888 5899999999999999999999999875
No 442
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=97.95 E-value=1.7e-05 Score=98.11 Aligned_cols=130 Identities=15% Similarity=0.148 Sum_probs=71.2
Q ss_pred eeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccccCCCchhHHHHhhCCCcccc
Q 003528 27 FIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRER 106 (813)
Q Consensus 27 vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~~~~e~~~~vld~~g~~~~e~ 106 (813)
+-+++.+. ..+.++.|.|||++||||+|+.++-... | ...|.........++ ..+.+.. -.|.. ...
T Consensus 597 vpnd~~l~---~~~~~~iiTGpN~~GKSt~lr~v~l~~i--l-Aq~G~~VPa~~a~i~---~~d~I~t---riga~-d~i 663 (854)
T PRK05399 597 VPNDCDLD---EERRLLLITGPNMAGKSTYMRQVALIVL--L-AQIGSFVPAESARIG---IVDRIFT---RIGAS-DDL 663 (854)
T ss_pred EecceeeC---CCCcEEEEECCCCCCcHHHHHHHHHHHH--H-HhcCCceeccceEec---ccCeeee---ccCcc-ccc
Confidence 34445554 2678999999999999999999865421 1 222331111000000 0111110 11211 111
Q ss_pred ccchHHHHHHHHHHHHHHH-----hHhhhccC---CCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcc
Q 003528 107 GEDDTAFEKQSALFALAVS-----DIVLINMW---CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (813)
Q Consensus 107 ~~~~~~~erQrv~iA~ALa-----dvLLLDEP---tsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~ 177 (813)
......|+.....++..|. .++|+||| |+.+|.. .....++..+.+..|.++||+||+.+...
T Consensus 664 ~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~--------aia~aile~l~~~~~~~~l~aTH~~el~~ 734 (854)
T PRK05399 664 ASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGL--------SIAWAVAEYLHDKIGAKTLFATHYHELTE 734 (854)
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhH--------HHHHHHHHHHHhcCCceEEEEechHHHHH
Confidence 1223456666666666555 89999999 6666632 23334444444444689999999987654
No 443
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.92 E-value=7.2e-05 Score=69.20 Aligned_cols=26 Identities=38% Similarity=0.400 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003528 40 YAVVSIMGPQSSGKSTLLNHLFGTNF 65 (813)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl~~ 65 (813)
+..+.|+||+|+|||||++.|++...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC
Confidence 67899999999999999999999886
No 444
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.89 E-value=2.3e-05 Score=83.66 Aligned_cols=67 Identities=7% Similarity=-0.036 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCC
Q 003528 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (813)
Q Consensus 114 erQrv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~G 190 (813)
.+||+.+|+++. .|++| ||..+|...- ...++ +..+.. .+.|.|+++|++..... .+.+.++ +.|
T Consensus 142 ~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~-----~~~~i--~~~~~~-~~~~~ivls~~la~~~~-~paI~vl-~s~ 209 (249)
T cd01128 142 PKRFFGAARNIEEGGSLTII--ATALVDTGSR-----MDDVI--FEEFKG-TGNMELVLDRRLAERRI-FPAIDIL-KSG 209 (249)
T ss_pred hHHHHHHhcCCCCCCceEEe--eeheecCCCc-----ccchH--HHHHhc-CCCcEEEEchHHhhCCC-CCeEEEc-CCC
Confidence 499999999984 99999 9999996541 11121 233322 36799999999977662 3344444 447
Q ss_pred eE
Q 003528 191 KI 192 (813)
Q Consensus 191 kI 192 (813)
++
T Consensus 210 sr 211 (249)
T cd01128 210 TR 211 (249)
T ss_pred Cc
Confidence 76
No 445
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.88 E-value=2.4e-05 Score=82.22 Aligned_cols=124 Identities=13% Similarity=0.109 Sum_probs=65.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHH-cCCCCCCCCCCCeeeeccceecccccCCCchhHHHHhhCCCccc-----------
Q 003528 38 LSYAVVSIMGPQSSGKSTLLNHLF-GTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRE----------- 105 (813)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~-Gl~~~~m~p~sG~~q~~~g~~~~~~~~~e~~~~vld~~g~~~~e----------- 105 (813)
+.|.++.|.|++|||||||...++ +... .|+ +..|+......+...--++..|.+-.+
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~------~g~----~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~ 92 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALK------QGK----KVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFP 92 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHh------CCC----EEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEe
Confidence 479999999999999999998874 3221 243 111111111101111111111111000
Q ss_pred ----cccchHHHHHHHHHHHHHHH-----hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCC
Q 003528 106 ----RGEDDTAFEKQSALFALAVS-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR 175 (813)
Q Consensus 106 ----~~~~~~~~erQrv~iA~ALa-----dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~ 175 (813)
..........+.+.....++ +++++|||++.++... ......++..+..+.+ .|.|+++++|+...
T Consensus 93 ~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~---~~~~~~~l~~l~~l~~-~g~tvllt~~~~~~ 167 (234)
T PRK06067 93 LNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAE---EDDILNFLTEAKNLVD-LGKTILITLHPYAF 167 (234)
T ss_pred ccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCC---HHHHHHHHHHHHHHHh-CCCEEEEEecCCcC
Confidence 00000112345555555555 7999999996554332 1114455555666555 48899999998764
No 446
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.86 E-value=4.2e-05 Score=87.34 Aligned_cols=159 Identities=14% Similarity=0.027 Sum_probs=94.3
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccccC
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG 88 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~~~ 88 (813)
.++...++..|..+ ..+++.+ |.+ .+|+.++|+|++|+|||||+++|+|... ++.|.+. .... .+
T Consensus 130 ~~~r~~i~~~l~TG--iraID~l-l~I--~~Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~gvI~-----~iGe-rg 194 (432)
T PRK06793 130 AFEREEITDVFETG--IKSIDSM-LTI--GIGQKIGIFAGSGVGKSTLLGMIAKNAK----ADINVIS-----LVGE-RG 194 (432)
T ss_pred chheechhhccCCC--CEEEecc-cee--cCCcEEEEECCCCCChHHHHHHHhccCC----CCeEEEE-----eCCC-Cc
Confidence 46677777777652 5688884 888 5899999999999999999999999886 6655421 1111 11
Q ss_pred CCchhHHHHhh---CCCccc---cccchHHHHHHHHHHHH-HHH---------hHhhhccCCCCCCchhhcChhhHHHHH
Q 003528 89 IEPCTLIMDLE---GTDGRE---RGEDDTAFEKQSALFAL-AVS---------DIVLINMWCHDIGREQAANKPLLKTVF 152 (813)
Q Consensus 89 ~e~~~~vld~~---g~~~~e---~~~~~~~~erQrv~iA~-ALa---------dvLLLDEPtsgLD~~~~a~~~l~~~v~ 152 (813)
.+-..++.+.. |+.... ...+....+|.|+..+. +++ -+||+|++|...|+. +++-
T Consensus 195 ~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--------reis 266 (432)
T PRK06793 195 REVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--------RSVD 266 (432)
T ss_pred ccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--------HHHH
Confidence 12112222222 221110 11122345788777644 443 578999999988764 3444
Q ss_pred HHHHHhhcCCCceEEEEeecCCCcccccCcceeeecCCeEEEec
Q 003528 153 QVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (813)
Q Consensus 153 ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~~~GkI~~~g 196 (813)
..+.+.-.. |-+..+.+|-.....+. ... ..|.|....
T Consensus 267 l~~~e~p~~-G~~~~~~s~l~~L~ERa----g~~-~~GSiT~~~ 304 (432)
T PRK06793 267 IAVKELPIG-GKTLLMESYMKKLLERS----GKT-QKGSITGIY 304 (432)
T ss_pred HHhcCCCCC-CeeeeeeccchhHHHHh----ccC-CCcceEEEE
Confidence 455555433 77777777732333321 112 347776544
No 447
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=97.82 E-value=7.9e-05 Score=78.91 Aligned_cols=134 Identities=15% Similarity=0.174 Sum_probs=64.2
Q ss_pred eeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccccCCCchhHHHHhhCCCcccc
Q 003528 27 FIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRER 106 (813)
Q Consensus 27 vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~~~~e~~~~vld~~g~~~~e~ 106 (813)
+-+++.+.- ..+.++.|.|||.+||||+||.++-... | ..-|-........++ ..+.+.+ ..+... ..
T Consensus 32 v~ndi~~~~--~~~~~~iiTGpN~sGKSt~lk~i~~~~i--l-aq~G~~VPA~~~~i~---~~d~I~t---~~~~~d-~~ 99 (235)
T PF00488_consen 32 VPNDIELSN--NKSRIIIITGPNMSGKSTFLKQIGLIVI--L-AQIGCFVPAESAEIP---IFDRIFT---RIGDDD-SI 99 (235)
T ss_dssp --EEEEESS--SSSSEEEEESSTTSSHHHHHHHHHHHHH--H-HTTT--BSSSEEEEE-----SEEEE---EES----SS
T ss_pred ecceeecCC--CceeEEEEeCCCccchhhHHHHHHHHhh--h-hhcCceeeecccccc---cccEEEe---eccccc-cc
Confidence 445555543 2347999999999999999999764321 0 112321100000000 0011111 011110 11
Q ss_pred ccchHHHHHHHHHHHHHH--H---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcc
Q 003528 107 GEDDTAFEKQSALFALAV--S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (813)
Q Consensus 107 ~~~~~~~erQrv~iA~AL--a---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~ 177 (813)
......|+.....++..+ + .++|+||+..|=++.. |..+...+++.+. ++.+..+|++||+.+...
T Consensus 100 ~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~e--g~ai~~aile~l~---~~~~~~~i~~TH~~~l~~ 170 (235)
T PF00488_consen 100 ESGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEE--GIAIAIAILEYLL---EKSGCFVIIATHFHELAE 170 (235)
T ss_dssp TTSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHH--HHHHHHHHHHHHH---HTTT-EEEEEES-GGGGG
T ss_pred ccccccHHHhHHHHHhhhhhcccceeeecccccCCCChhH--HHHHHHHHHHHHH---HhccccEEEEeccchhHH
Confidence 111223322222233223 2 8999999999887776 2233333444333 324788999999998754
No 448
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=97.80 E-value=1.8e-05 Score=93.96 Aligned_cols=68 Identities=12% Similarity=0.096 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHH-------hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcce
Q 003528 112 AFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPV 184 (813)
Q Consensus 112 ~~erQrv~iA~ALa-------dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~v 184 (813)
.+|+||++||++++ +++|+|||++|||+.. ...+.+.+.++.+ +.+||+|||++..+. .+++.+
T Consensus 443 gGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~------~~~~~~~l~~l~~--~~~vi~iTH~~~~~~-~ad~~~ 513 (563)
T TIGR00634 443 GGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGET------AQAIAKKLAQLSE--RHQVLCVTHLPQVAA-HADAHF 513 (563)
T ss_pred HhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHhc--CCEEEEEEChHHHHH-hcCeEE
Confidence 45999999999987 4999999999999999 9999999999863 789999999998775 456555
Q ss_pred eeec
Q 003528 185 LRED 188 (813)
Q Consensus 185 ll~~ 188 (813)
++.+
T Consensus 514 ~l~k 517 (563)
T TIGR00634 514 KVEK 517 (563)
T ss_pred EEEE
Confidence 5544
No 449
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.73 E-value=3.3e-05 Score=97.94 Aligned_cols=74 Identities=9% Similarity=0.062 Sum_probs=63.3
Q ss_pred cchHHHHHHHHHHHHHHH-------------hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCC
Q 003528 108 EDDTAFEKQSALFALAVS-------------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT 174 (813)
Q Consensus 108 ~~~~~~erQrv~iA~ALa-------------dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~ 174 (813)
.....+|+++|.||+||+ ++|||||||++||+.. +..++++|.++.. .|.+|+||||+++
T Consensus 949 ~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~------~~~~~~~l~~l~~-~g~~i~iisH~~~ 1021 (1042)
T TIGR00618 949 ATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDS------LDRAIGILDAIRE-GSKMIGIISHVPE 1021 (1042)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHH------HHHHHHHHHHHHh-CCCEEEEEeCcHH
Confidence 345667999999999885 5899999999999999 9999999999976 5899999999999
Q ss_pred CcccccCcceeeec
Q 003528 175 RTPLENLEPVLRED 188 (813)
Q Consensus 175 ~~~~~~~~~vll~~ 188 (813)
.....++++.++..
T Consensus 1022 ~~~~~~~~i~v~~~ 1035 (1042)
T TIGR00618 1022 FRERIPHRILVKKT 1035 (1042)
T ss_pred HHHhhCCEEEEEEC
Confidence 88877776666654
No 450
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.69 E-value=5.9e-05 Score=77.63 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 003528 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (813)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (813)
++.|.||+||||||+++.|.+...
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 789999999999999999988775
No 451
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.62 E-value=5.7e-05 Score=89.28 Aligned_cols=69 Identities=13% Similarity=0.224 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHH-------------hHhhhccCC-CCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccc
Q 003528 114 EKQSALFALAVS-------------DIVLINMWC-HDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE 179 (813)
Q Consensus 114 erQrv~iA~ALa-------------dvLLLDEPt-sgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~ 179 (813)
|+||++||++++ +++|+|||+ ++||+.. ...+++.+.++ . |.+||+|||+..... .
T Consensus 473 e~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~------~~~~~~~l~~~--~-~~~iiiish~~~~~~-~ 542 (562)
T PHA02562 473 EKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEG------TKALLSILDSL--K-DTNVFVISHKDHDPQ-K 542 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhH------HHHHHHHHHhC--C-CCeEEEEECchhchh-h
Confidence 999999998874 799999998 7899999 99999999988 3 789999999976654 3
Q ss_pred cCcceeeecCCeE
Q 003528 180 NLEPVLREDIQKI 192 (813)
Q Consensus 180 ~~~~vll~~~GkI 192 (813)
+++++++.+.|+.
T Consensus 543 ~d~~~~l~~~~~~ 555 (562)
T PHA02562 543 FDRHLKMEKVGRF 555 (562)
T ss_pred hhcEEEEEEECCe
Confidence 5666666543543
No 452
>PRK10869 recombination and repair protein; Provisional
Probab=97.62 E-value=5.4e-05 Score=89.60 Aligned_cols=68 Identities=13% Similarity=0.027 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHH-------hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcce
Q 003528 112 AFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPV 184 (813)
Q Consensus 112 ~~erQrv~iA~ALa-------dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~v 184 (813)
.+|++|++||++++ +++|+|||++|||... ...+.+.+.++.+ +.+||+|||++..+. .+++.+
T Consensus 433 gGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~------~~~v~~~l~~l~~--~~qvi~iTH~~~~~~-~ad~~~ 503 (553)
T PRK10869 433 GGELSRIALAIQVITARKMETPALIFDEVDVGISGPT------AAVVGKLLRQLGE--STQVMCVTHLPQVAG-CGHQHF 503 (553)
T ss_pred HHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHhc--CCEEEEEecCHHHHH-hCCEEE
Confidence 45999999999998 5999999999999999 9999999999963 689999999998764 456665
Q ss_pred eeec
Q 003528 185 LRED 188 (813)
Q Consensus 185 ll~~ 188 (813)
++.+
T Consensus 504 ~v~k 507 (553)
T PRK10869 504 FVSK 507 (553)
T ss_pred EEec
Confidence 5544
No 453
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.60 E-value=4.7e-05 Score=96.45 Aligned_cols=73 Identities=14% Similarity=0.112 Sum_probs=60.4
Q ss_pred cchHHHHHHHHHHHHHHH-----------hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCc
Q 003528 108 EDDTAFEKQSALFALAVS-----------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 176 (813)
Q Consensus 108 ~~~~~~erQrv~iA~ALa-----------dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~ 176 (813)
.....+|+++++||+||+ ++||+||||.+||+.. +..++++|..+.+. |++|+||||..+..
T Consensus 948 ~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~------~~~~~~~l~~l~~~-g~~v~iisH~~~l~ 1020 (1047)
T PRK10246 948 RTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSET------LDTALDALDALNAS-GKTIGVISHVEAMK 1020 (1047)
T ss_pred ccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHHC-CCEEEEEecHHHHH
Confidence 445677999999999985 7899999999999999 99999999999764 99999999977766
Q ss_pred ccccCcceeee
Q 003528 177 PLENLEPVLRE 187 (813)
Q Consensus 177 ~~~~~~~vll~ 187 (813)
..+...+.|..
T Consensus 1021 ~~i~~qi~V~k 1031 (1047)
T PRK10246 1021 ERIPVQIKVKK 1031 (1047)
T ss_pred HhccceEEEEE
Confidence 55444444443
No 454
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.58 E-value=6.7e-05 Score=63.06 Aligned_cols=33 Identities=33% Similarity=0.367 Sum_probs=26.6
Q ss_pred ceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003528 32 KLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNF 65 (813)
Q Consensus 32 sl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~ 65 (813)
.+.+. ..|.++.|.|+|||||||||.+|.=++.
T Consensus 16 ~~~~~-~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 16 TIDFD-PRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EEeec-CCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 44443 2578999999999999999999887665
No 455
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=97.58 E-value=0.00012 Score=83.98 Aligned_cols=58 Identities=16% Similarity=0.016 Sum_probs=49.8
Q ss_pred ccEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCe
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR 74 (813)
Q Consensus 8 ~~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~ 74 (813)
+.++..++++.|..+ ..+++.++ .+ .+|++++|+|++||||||||++|+|+.. |+.|.
T Consensus 138 ~~~~r~~v~~~l~TG--i~aID~L~-~I--~~Gqri~I~G~SGsGKTTLL~~Ia~l~~----pd~gv 195 (450)
T PRK06002 138 PAMTRARVETGLRTG--VRVIDIFT-PL--CAGQRIGIFAGSGVGKSTLLAMLARADA----FDTVV 195 (450)
T ss_pred CCeEeecceEEcCCC--cEEeeeec-ee--cCCcEEEEECCCCCCHHHHHHHHhCCCC----CCeee
Confidence 368999999999763 67888885 78 4899999999999999999999999986 66554
No 456
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=97.51 E-value=0.00028 Score=87.37 Aligned_cols=45 Identities=2% Similarity=0.030 Sum_probs=39.2
Q ss_pred hHhhhccCCCCC-CchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcc
Q 003528 126 DIVLINMWCHDI-GREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (813)
Q Consensus 126 dvLLLDEPtsgL-D~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~ 177 (813)
.++++|||..+| |+.. .+.+.+.++.+.+. |.+++++||+++.+.
T Consensus 654 ~illlDE~~~~L~d~~~------~~~i~~~lk~~RK~-~~~vil~Tq~~~d~~ 699 (818)
T PRK13830 654 SLIILDEAWLMLGHPVF------RDKIREWLKVLRKA-NCAVVLATQSISDAE 699 (818)
T ss_pred cEEEEECchhhcCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHh
Confidence 789999999999 6787 88899999988765 889999999997653
No 457
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.51 E-value=8.2e-05 Score=75.69 Aligned_cols=38 Identities=29% Similarity=0.192 Sum_probs=31.8
Q ss_pred cceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCe
Q 003528 31 VKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR 74 (813)
Q Consensus 31 vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~ 74 (813)
+.+.+ ..|+.++|+||||||||||+++|+|+.+ +..|.
T Consensus 18 l~~~v--~~g~~i~I~G~tGSGKTTll~aL~~~i~----~~~~~ 55 (186)
T cd01130 18 LWLAV--EARKNILISGGTGSGKTTLLNALLAFIP----PDERI 55 (186)
T ss_pred HHHHH--hCCCEEEEECCCCCCHHHHHHHHHhhcC----CCCCE
Confidence 34556 3699999999999999999999999986 66554
No 458
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.49 E-value=8.1e-05 Score=78.62 Aligned_cols=42 Identities=14% Similarity=0.300 Sum_probs=34.3
Q ss_pred hHhhhccCCCCC------CchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCC
Q 003528 126 DIVLINMWCHDI------GREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT 174 (813)
Q Consensus 126 dvLLLDEPtsgL------D~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~ 174 (813)
+++|+| |++.+ |+.. ...+++.+.++.++.|+++|+++|..-
T Consensus 113 ~lvviD-pl~~~~~~~~~d~~~------~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 113 DLVVID-PLVSFHGVSENDNGA------MDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred CEEEEC-ChHHhCCCCcCCHHH------HHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 999999 87654 4444 778888888888777999999999873
No 459
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.39 E-value=0.00021 Score=82.86 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=29.6
Q ss_pred eeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003528 28 IKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNF 65 (813)
Q Consensus 28 L~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~ 65 (813)
+++.++.+ ..|.|++++||||+||||++..|++...
T Consensus 246 ~~~~~~~~--~~g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 246 LDSEDALL--DRGGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred ccCccccc--cCCcEEEEECCCCccHHHHHHHHHHHHH
Confidence 44455555 3689999999999999999999999764
No 460
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=97.38 E-value=0.00042 Score=85.70 Aligned_cols=124 Identities=14% Similarity=0.115 Sum_probs=66.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccccCCCchhHHHHhhCCCccccccchHHHHHHHH
Q 003528 39 SYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSA 118 (813)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~~~~e~~~~vld~~g~~~~e~~~~~~~~erQrv 118 (813)
...++.|.|||.+||||+||.++=... | ...|........-+ ...+.+.+ -.|.. .........|+-...
T Consensus 591 ~~~~~iITGPNmgGKSt~lrqvali~i--m-Aq~G~~VPA~~a~i---~~~D~Ift---rig~~-d~i~~g~STF~~Em~ 660 (840)
T TIGR01070 591 NRRMLLITGPNMGGKSTYMRQTALIAL--L-AQIGSFVPAESAEL---PLFDRIFT---RIGAS-DDLASGRSTFMVEMT 660 (840)
T ss_pred CccEEEEECCCCCCchHHHHHHHHHHH--H-HhcCCCccchheEe---ccccEEEE---ecCcc-cchhcCcchHHHHHH
Confidence 467999999999999999998753221 1 12233111000000 00111110 01111 111112234544444
Q ss_pred HHHHHHH-----hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcc
Q 003528 119 LFALAVS-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (813)
Q Consensus 119 ~iA~ALa-----dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~ 177 (813)
.+|..|- .++|+||+..|-++.. |..+...|.+.+.+ ..|..+||+||.++...
T Consensus 661 e~a~IL~~at~~sLvllDE~GrGT~~~d--g~aia~ai~e~l~~---~~~~~~~~~TH~~eL~~ 719 (840)
T TIGR01070 661 EAANILHNATENSLVLFDEIGRGTSTYD--GLALAWAIAEYLHE---HIRAKTLFATHYFELTA 719 (840)
T ss_pred HHHHHHhhCCCCEEEEEccCCCCCChhH--HHHHHHHHHHHHHh---cCCCEEEEEcCchHHHH
Confidence 4444444 8999999988877665 23333444444443 24789999999997654
No 461
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.37 E-value=0.00051 Score=64.30 Aligned_cols=107 Identities=17% Similarity=0.198 Sum_probs=59.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccccCCCchhHHHHhhCCCccccccchHHHHHHHH
Q 003528 39 SYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSA 118 (813)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~~~~e~~~~vld~~g~~~~e~~~~~~~~erQrv 118 (813)
.+..+.|.||.|+|||||++.+..... ...+.. .++........... ....+. ..+..
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~----~~~~~v-----~~~~~~~~~~~~~~-~~~~~~------------~~~~~ 75 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF----RPGAPF-----LYLNASDLLEGLVV-AELFGH------------FLVRL 75 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh----cCCCCe-----EEEehhhhhhhhHH-HHHhhh------------hhHhH
Confidence 478899999999999999999998764 111111 11111000000000 000000 01222
Q ss_pred HHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhc----CCCceEEEEeecCC
Q 003528 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS----PRKTTLMFVIRDKT 174 (813)
Q Consensus 119 ~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~----~~g~TIL~VtHD~~ 174 (813)
....... .++++||.-.. ++.. ...+.+.+..... ..+.++|+++++..
T Consensus 76 ~~~~~~~~~~~~lilDe~~~~-~~~~------~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 76 LFELAEKAKPGVLFIDEIDSL-SRGA------QNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred HHHhhccCCCeEEEEeChhhh-hHHH------HHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 2222332 89999997543 3333 6667777777654 24788888888775
No 462
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.36 E-value=0.00014 Score=73.92 Aligned_cols=26 Identities=35% Similarity=0.487 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003528 40 YAVVSIMGPQSSGKSTLLNHLFGTNF 65 (813)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl~~ 65 (813)
|++++|+||||||||||+++|++...
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 68999999999999999999999864
No 463
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.35 E-value=0.00011 Score=75.84 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=26.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003528 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNF 65 (813)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~~ 65 (813)
..|.+++|.||||||||||++.|.|+..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4799999999999999999999999875
No 464
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.33 E-value=0.00026 Score=75.39 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=31.5
Q ss_pred cceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003528 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNF 65 (813)
Q Consensus 25 ~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~ 65 (813)
..++..++..+. ....++.|.||+|+|||||++.+++...
T Consensus 29 ~~~~~~l~~~~~-~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 29 KRAMAYLEYGLS-QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred HHHHHHHHHHHh-cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 346666666664 2456899999999999999999998764
No 465
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.32 E-value=0.00016 Score=73.14 Aligned_cols=27 Identities=22% Similarity=0.154 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003528 39 SYAVVSIMGPQSSGKSTLLNHLFGTNF 65 (813)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl~~ 65 (813)
.|++++|+|+||||||||+++|+|+..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 589999999999999999999999875
No 466
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.30 E-value=0.00065 Score=75.18 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=26.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003528 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNF 65 (813)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~~ 65 (813)
.++++++++||||+||||++..|++...
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3689999999999999999999999876
No 467
>PRK03918 chromosome segregation protein; Provisional
Probab=97.28 E-value=0.00022 Score=88.96 Aligned_cols=71 Identities=11% Similarity=0.086 Sum_probs=54.9
Q ss_pred chHHHHHHHHHHH------HHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccc
Q 003528 109 DDTAFEKQSALFA------LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE 179 (813)
Q Consensus 109 ~~~~~erQrv~iA------~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~ 179 (813)
....+|+++++|| ++++ +++|+||||++||+.. ...+.+++..+... +.+||+||||.+... .
T Consensus 788 ~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~------~~~l~~~l~~~~~~-~~~iiiith~~~~~~-~ 859 (880)
T PRK03918 788 FLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEER------RRKLVDIMERYLRK-IPQVIIVSHDEELKD-A 859 (880)
T ss_pred hCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHH------HHHHHHHHHHHHhc-CCEEEEEECCHHHHH-h
Confidence 3456689966555 3444 8999999999999999 99999999887654 789999999997543 4
Q ss_pred cCcceeee
Q 003528 180 NLEPVLRE 187 (813)
Q Consensus 180 ~~~~vll~ 187 (813)
+++++.+.
T Consensus 860 ~d~~~~l~ 867 (880)
T PRK03918 860 ADYVIRVS 867 (880)
T ss_pred CCeEEEEE
Confidence 56555555
No 468
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.28 E-value=0.00038 Score=78.64 Aligned_cols=53 Identities=11% Similarity=0.034 Sum_probs=46.9
Q ss_pred cEEEEeeeEEeccccccceee-----------ecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003528 9 STQLIDGDGTFNVSGIEHFIK-----------EVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNF 65 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~-----------~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~ 65 (813)
.+++.|+++.|++. ..+|+ |+.+.+ .+|+.++|+||.|||||||++.|+....
T Consensus 130 ri~Fe~LTf~YP~e--r~~Le~~~~~~~~R~id~~~pi--g~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 130 RVLFENLTPLYPNE--RLRLETSTEDLSTRVLDLFAPI--GKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CeEEEEeeecCCCc--cceeecCccccceeeeeeEEEe--CCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 58999999999763 56786 889999 5899999999999999999999998764
No 469
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.28 E-value=0.00046 Score=77.12 Aligned_cols=109 Identities=19% Similarity=0.262 Sum_probs=59.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccccCCCchhHHHHh-hC-CCccccccchHHHHHH
Q 003528 39 SYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDL-EG-TDGRERGEDDTAFEKQ 116 (813)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~~~~e~~~~vld~-~g-~~~~e~~~~~~~~erQ 116 (813)
++.++.|.||+||||||+|+.|.+... .+..|+..+. .. +..+.... .. ....+.+.....+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~---~~~~~~i~ti-----Ed-----p~E~~~~~~~~~i~q~evg~~~~~~--- 184 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYIN---KNAAGHIITI-----ED-----PIEYVHRNKRSLINQREVGLDTLSF--- 184 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhC---cCCCCEEEEE-----cC-----ChhhhccCccceEEccccCCCCcCH---
Confidence 578999999999999999999998664 1333442211 00 11110000 00 0000111111111
Q ss_pred HHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcc
Q 003528 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (813)
Q Consensus 117 rv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~ 177 (813)
.-+++.+|- |++++||+. |++. ....++ ... .|.+++.++|-.+...
T Consensus 185 ~~~l~~~lr~~pd~i~vgEir---d~~~------~~~~l~----aa~-tGh~v~~T~Ha~~~~~ 234 (343)
T TIGR01420 185 ANALRAALREDPDVILIGEMR---DLET------VELALT----AAE-TGHLVFGTLHTNSAAQ 234 (343)
T ss_pred HHHHHHhhccCCCEEEEeCCC---CHHH------HHHHHH----HHH-cCCcEEEEEcCCCHHH
Confidence 112444554 999999996 6665 333333 223 4888999999876543
No 470
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.24 E-value=0.00014 Score=94.23 Aligned_cols=66 Identities=15% Similarity=0.242 Sum_probs=55.9
Q ss_pred chHHHHHH------HHHHHHHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhc----CCCceEEEEeecCCC
Q 003528 109 DDTAFEKQ------SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS----PRKTTLMFVIRDKTR 175 (813)
Q Consensus 109 ~~~~~erQ------rv~iA~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~----~~g~TIL~VtHD~~~ 175 (813)
....+|+| |++||++++ ++|||||||++||+.. ...+.+.+.++.. ..|.+||+||||+++
T Consensus 1199 ~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~------~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~ 1272 (1311)
T TIGR00606 1199 RCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDREN------IESLAHALVEIIKSRSQQRNFQLLVITHDEDF 1272 (1311)
T ss_pred CCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHH------HHHHHHHHHHHHHhhhhccCCeEEEEecCHHH
Confidence 45667999 999999999 9999999999999999 8888888877642 247899999999988
Q ss_pred ccccc
Q 003528 176 TPLEN 180 (813)
Q Consensus 176 ~~~~~ 180 (813)
+...+
T Consensus 1273 ~~~~~ 1277 (1311)
T TIGR00606 1273 VELLG 1277 (1311)
T ss_pred HHHHh
Confidence 76544
No 471
>PRK01156 chromosome segregation protein; Provisional
Probab=97.23 E-value=0.00029 Score=88.16 Aligned_cols=72 Identities=6% Similarity=0.049 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHH------HHHH---hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcC-CC-ceEEEEeecCCCccc
Q 003528 110 DTAFEKQSALFA------LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP-RK-TTLMFVIRDKTRTPL 178 (813)
Q Consensus 110 ~~~~erQrv~iA------~ALa---dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~-~g-~TIL~VtHD~~~~~~ 178 (813)
...+|+++++|| ++++ +++|+||||++||+.. ...+.+++...... .+ .++|+||||++.+.
T Consensus 802 lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~------~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~- 874 (895)
T PRK01156 802 LSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDR------RTNLKDIIEYSLKDSSDIPQVIMISHHRELLS- 874 (895)
T ss_pred CCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHH------HHHHHHHHHHHHHhcCCCCeEEEEECchHHHH-
Confidence 455688988765 5555 9999999999999999 88888888754333 23 48999999998765
Q ss_pred ccCcceeeec
Q 003528 179 ENLEPVLRED 188 (813)
Q Consensus 179 ~~~~~vll~~ 188 (813)
.+++++.+..
T Consensus 875 ~~d~ii~~~~ 884 (895)
T PRK01156 875 VADVAYEVKK 884 (895)
T ss_pred hcCeEEEEEe
Confidence 4666665553
No 472
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.20 E-value=0.00029 Score=82.20 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=47.6
Q ss_pred EEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCe
Q 003528 12 LIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR 74 (813)
Q Consensus 12 l~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~ 74 (813)
+.|++..|+. ..+++++++... .|+.++|+||||||||||+++|.|+.+ |.+|+
T Consensus 187 ~~d~~~v~Gq---~~~~~al~laa~--~G~~llliG~~GsGKTtLak~L~gllp----p~~g~ 240 (506)
T PRK09862 187 QHDLSDVIGQ---EQGKRGLEITAA--GGHNLLLIGPPGTGKTMLASRINGLLP----DLSNE 240 (506)
T ss_pred ccCeEEEECc---HHHHhhhheecc--CCcEEEEECCCCCcHHHHHHHHhccCC----CCCCc
Confidence 4588888865 578899999994 699999999999999999999999998 88887
No 473
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.15 E-value=0.00027 Score=74.31 Aligned_cols=33 Identities=30% Similarity=0.261 Sum_probs=28.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCe
Q 003528 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR 74 (813)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~ 74 (813)
.+..+++|.||||||||||++.|.+++. +..|.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~----~~~g~ 63 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ----QDGEL 63 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh----hccCC
Confidence 3578999999999999999999999997 66565
No 474
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.11 E-value=0.00038 Score=69.79 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003528 40 YAVVSIMGPQSSGKSTLLNHLFGTNF 65 (813)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl~~ 65 (813)
|.+++|+||||||||||++.|++..+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 67999999999999999999999764
No 475
>PRK15494 era GTPase Era; Provisional
Probab=97.08 E-value=0.00082 Score=74.99 Aligned_cols=53 Identities=28% Similarity=0.319 Sum_probs=45.5
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCc-------EEEEEcCCCCcHHHHHHHHHcCCC
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYA-------VVSIMGPQSSGKSTLLNHLFGTNF 65 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~Ge-------ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (813)
-++..+++++|... ...++.+++++ ..|+ .++|+|..|+|||||+|.|.|-..
T Consensus 18 ~~~~~~~~~~~~~~--~~~~~~~~~~~--~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k~ 77 (339)
T PRK15494 18 DTEALAAAVREDAS--TGSTSKLPLEV--KFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEKL 77 (339)
T ss_pred ccccccccccCCCC--cccccCCcccc--ccccccccceeEEEEEcCCCCCHHHHHHHHhCCce
Confidence 37888899999742 67899999988 4788 999999999999999999998765
No 476
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=97.07 E-value=0.00058 Score=81.74 Aligned_cols=83 Identities=11% Similarity=0.100 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHH-----hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCcceeee-
Q 003528 114 EKQSALFALAVS-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE- 187 (813)
Q Consensus 114 erQrv~iA~ALa-----dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~~vll~- 187 (813)
|.||+-+|.-+- =+.+||||.-||=+.- ...+++.|++|+.. |-|+|+|.||.+.+. ..|.++-+
T Consensus 486 EaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrD------n~rLi~tL~~LRDl-GNTviVVEHDedti~--~AD~iIDiG 556 (935)
T COG0178 486 EAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRD------NERLIETLKRLRDL-GNTVIVVEHDEDTIR--AADHIIDIG 556 (935)
T ss_pred HHHHHHHHHHhcccceeeEEEecCCccCCChhh------HHHHHHHHHHHHhc-CCeEEEEecCHHHHh--hcCEEEeeC
Confidence 999999999888 5779999999999888 88999999999864 999999999998776 33444332
Q ss_pred -----cCCeEEEecCcccccCCc
Q 003528 188 -----DIQKIWDSVPKPQAHMET 205 (813)
Q Consensus 188 -----~~GkI~~~g~~~e~~~~~ 205 (813)
+.|+|++.|+++++..+.
T Consensus 557 PgAG~~GGeIv~~Gtp~~i~~~~ 579 (935)
T COG0178 557 PGAGEHGGEIVAEGTPEELLANP 579 (935)
T ss_pred CCCCcCCCEEEEccCHHHHHhCC
Confidence 448999999999987654
No 477
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=97.06 E-value=0.0005 Score=78.70 Aligned_cols=52 Identities=21% Similarity=0.056 Sum_probs=45.4
Q ss_pred cEEEEeeeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003528 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNF 65 (813)
Q Consensus 9 ~Iel~dls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~ 65 (813)
.++...++..|..+ ..+++++ |.+ .+|++++|+|+||+||||||++|+|...
T Consensus 129 ~~~r~~v~~~l~tG--i~aID~l-l~i--~~GqrigI~G~sG~GKSTLL~~I~~~~~ 180 (433)
T PRK07594 129 AMVRQPITQPLMTG--IRAIDSV-ATC--GEGQRVGIFSAPGVGKSTLLAMLCNAPD 180 (433)
T ss_pred ceeccCHhheeCCC--ceeeeee-eec--CCCCEEEEECCCCCCccHHHHHhcCCCC
Confidence 57777888888553 6899999 999 5899999999999999999999999876
No 478
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.06 E-value=0.00044 Score=70.88 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=25.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003528 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNF 65 (813)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~~ 65 (813)
.+|++++|+||+|||||||++.|.+..+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3799999999999999999999999863
No 479
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.02 E-value=0.00083 Score=74.40 Aligned_cols=46 Identities=22% Similarity=0.143 Sum_probs=38.4
Q ss_pred eeEEeccccccceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003528 15 GDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNF 65 (813)
Q Consensus 15 ls~~y~~~~~~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~ 65 (813)
++..|..+ ..+++.+ +.+ .+|++++|+|+||+|||||+++|+|...
T Consensus 49 ~~~~l~tG--i~aiD~l-~~i--~~Gqri~I~G~sG~GKTtLl~~Ia~~~~ 94 (326)
T cd01136 49 IDEVLPTG--VRAIDGL-LTV--GKGQRLGIFAGSGVGKSTLLGMIARGTT 94 (326)
T ss_pred ceeEcCCC--cEEEeee-eEE--cCCcEEEEECCCCCChHHHHHHHhCCCC
Confidence 33445432 6789999 999 5899999999999999999999999986
No 480
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.01 E-value=0.00046 Score=69.25 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003528 40 YAVVSIMGPQSSGKSTLLNHLFGTNF 65 (813)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl~~ 65 (813)
|++++|+||+|||||||++.|++...
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999999864
No 481
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=96.99 E-value=0.00053 Score=78.54 Aligned_cols=38 Identities=24% Similarity=0.161 Sum_probs=35.1
Q ss_pred cceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003528 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNF 65 (813)
Q Consensus 25 ~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~ 65 (813)
..+++++ |++ .+|++++|+|+||+|||||+++|+|...
T Consensus 143 i~aID~l-l~I--~~GQ~igI~G~sGaGKSTLl~~I~g~~~ 180 (434)
T PRK07196 143 VNAINGL-LTI--GKGQRVGLMAGSGVGKSVLLGMITRYTQ 180 (434)
T ss_pred eeeccce-EeE--ecceEEEEECCCCCCccHHHHHHhcccC
Confidence 5689999 999 5899999999999999999999999875
No 482
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.94 E-value=0.00082 Score=66.28 Aligned_cols=34 Identities=24% Similarity=0.465 Sum_probs=26.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCC
Q 003528 40 YAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (813)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG 73 (813)
.-.++|+|++|||||||++.|.|..+....|+.|
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g 47 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHITPTQG 47 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCC
Confidence 3458999999999999999999975532334445
No 483
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=96.90 E-value=0.0018 Score=80.12 Aligned_cols=45 Identities=9% Similarity=0.057 Sum_probs=38.1
Q ss_pred hHhhhccCCCCCC-chhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcc
Q 003528 126 DIVLINMWCHDIG-REQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (813)
Q Consensus 126 dvLLLDEPtsgLD-~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~ 177 (813)
.++++|||...|| +.. .+.+.+.++.+.+. |..++++||+++.+.
T Consensus 644 ~il~iDE~w~~L~~~~~------~~~i~~~lk~~RK~-~~~~i~~TQ~~~d~~ 689 (800)
T PRK13898 644 SMIVLDEAWALIDNPVF------APKIKDWLKVLRKL-NTFVIFATQSVEDAS 689 (800)
T ss_pred cEEEEeCChhhCCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHH
Confidence 7899999999999 666 77888888888654 889999999997654
No 484
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.87 E-value=0.00083 Score=85.67 Aligned_cols=66 Identities=9% Similarity=0.091 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHHHH-------hHhhhccCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcccccCc
Q 003528 110 DTAFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (813)
Q Consensus 110 ~~~~erQrv~iA~ALa-------dvLLLDEPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~~~~~~ 182 (813)
...+|+++++||++++ +++|+|||+++||+.. ...+.+++.++.+ +.++|||||++.... .|++
T Consensus 1090 lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~------~~~~~~~~~~~~~--~~~~i~~sh~~~~~~-~~d~ 1160 (1179)
T TIGR02168 1090 LSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDAN------VERFANLLKEFSK--NTQFIVITHNKGTME-VADQ 1160 (1179)
T ss_pred cCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHH------HHHHHHHHHHhcc--CCEEEEEEcChhHHH-Hhhh
Confidence 3456999999999983 7999999999999999 9999999999864 478999999998764 3555
Q ss_pred ce
Q 003528 183 PV 184 (813)
Q Consensus 183 ~v 184 (813)
.+
T Consensus 1161 ~~ 1162 (1179)
T TIGR02168 1161 LY 1162 (1179)
T ss_pred He
Confidence 43
No 485
>COG1159 Era GTPase [General function prediction only]
Probab=96.85 E-value=0.0017 Score=70.17 Aligned_cols=123 Identities=21% Similarity=0.254 Sum_probs=71.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCCeeeeccceecccccCCCchhHHHHhhCCCccccccchHHHHHHHH
Q 003528 39 SYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSA 118 (813)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl~~~~m~p~sG~~q~~~g~~~~~~~~~e~~~~vld~~g~~~~e~~~~~~~~erQrv 118 (813)
+..+|||+|+..+|||||||.|.|..- ...+-..|||+..+..-.+..+......|.-|+.... .....+|.+-+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~Ki---sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk--~~l~~~m~~~a 79 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKI---SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPK--HALGELMNKAA 79 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCce---EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcc--hHHHHHHHHHH
Confidence 456899999999999999999999865 2445556777655444333333344445655654331 12233344444
Q ss_pred HHHHHHHhHhhhc-cCCCCCCchhhcChhhHHHHHHHHHHhhcCCCceEEEEeecCCCcc
Q 003528 119 LFALAVSDIVLIN-MWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (813)
Q Consensus 119 ~iA~ALadvLLLD-EPtsgLD~~~~a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~~~~ 177 (813)
--+..=+|++|+= ..+.++++. -+.+++.+++. ++.+|++..-.+.+.
T Consensus 80 ~~sl~dvDlilfvvd~~~~~~~~-------d~~il~~lk~~----~~pvil~iNKID~~~ 128 (298)
T COG1159 80 RSALKDVDLILFVVDADEGWGPG-------DEFILEQLKKT----KTPVILVVNKIDKVK 128 (298)
T ss_pred HHHhccCcEEEEEEeccccCCcc-------HHHHHHHHhhc----CCCeEEEEEccccCC
Confidence 4343333666542 233334443 45666766662 345666666665443
No 486
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.82 E-value=0.00053 Score=71.94 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 003528 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (813)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (813)
++||.|+||||||||++.|.+++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999999875
No 487
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.81 E-value=0.00064 Score=69.49 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003528 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (813)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (813)
+++|.||+|||||||.++|.++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999986
No 488
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.76 E-value=0.0047 Score=64.51 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHH
Q 003528 38 LSYAVVSIMGPQSSGKSTLLNHLF 61 (813)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~ 61 (813)
.+|+++.|.|++|||||||...++
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHH
Confidence 479999999999999999988655
No 489
>PRK08149 ATP synthase SpaL; Validated
Probab=96.74 E-value=0.0015 Score=74.72 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=34.8
Q ss_pred cceeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003528 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNF 65 (813)
Q Consensus 25 ~~vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~ 65 (813)
..+++++ +.+ .+|++++|+|++|+|||||+++|+|...
T Consensus 139 i~aid~l-l~i--~~Gq~i~I~G~sG~GKTTLl~~i~~~~~ 176 (428)
T PRK08149 139 VRAIDGL-LTC--GVGQRMGIFASAGCGKTSLMNMLIEHSE 176 (428)
T ss_pred cEEEeee-eeE--ecCCEEEEECCCCCChhHHHHHHhcCCC
Confidence 5689999 999 5899999999999999999999999765
No 490
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=96.72 E-value=0.0015 Score=65.59 Aligned_cols=35 Identities=31% Similarity=0.359 Sum_probs=27.3
Q ss_pred eeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003528 28 IKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNF 65 (813)
Q Consensus 28 L~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~ 65 (813)
++++.+.+ ...+.+|.||||+||||+|.+|.-++.
T Consensus 10 ~~~~~i~f---~~g~~vi~G~Ng~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 10 FKDLEIDF---SPGLNVIYGPNGSGKSTILEAIRYALG 44 (202)
T ss_dssp EEEEEEE-----SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcceEEEc---CCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 35666665 346999999999999999999987664
No 491
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.71 E-value=0.0013 Score=65.76 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003528 39 SYAVVSIMGPQSSGKSTLLNHLFGTNF 65 (813)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl~~ 65 (813)
++++++++|++|+|||||+|.|.|-..
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~ 60 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPEAK 60 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTSS-
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 579999999999999999999999743
No 492
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.71 E-value=0.00082 Score=73.37 Aligned_cols=26 Identities=31% Similarity=0.219 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003528 40 YAVVSIMGPQSSGKSTLLNHLFGTNF 65 (813)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl~~ 65 (813)
-.++||.||||||||||+++|.++..
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 47999999999999999999999874
No 493
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=96.71 E-value=0.002 Score=65.85 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 003528 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (813)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (813)
.++|+|++|+|||||+|.|+|-..
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~ 25 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREV 25 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCc
Confidence 379999999999999999999754
No 494
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=96.71 E-value=0.0084 Score=68.20 Aligned_cols=147 Identities=20% Similarity=0.132 Sum_probs=81.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHH-cCCCCCCCCCCCe--eeeccceecccc-cC----CCchhHHHHhh--CCCccc-c
Q 003528 38 LSYAVVSIMGPQSSGKSTLLNHLF-GTNFREMDAFKGR--SQTTKGIWMARC-AG----IEPCTLIMDLE--GTDGRE-R 106 (813)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~-Gl~~~~m~p~sG~--~q~~~g~~~~~~-~~----~e~~~~vld~~--g~~~~e-~ 106 (813)
.+| |+.|+|.+-=||||||++|- |..... |-.|| ..+....+--+. .+ --++.....++ |.+... .
T Consensus 243 p~G-vTlIvGGGyHGKSTLL~Ale~GVYnHi--pGDGRE~VVT~~~avkirAEDGR~V~~vDISpFI~~LP~g~dT~~Fs 319 (448)
T PF09818_consen 243 PKG-VTLIVGGGYHGKSTLLEALERGVYNHI--PGDGREFVVTDPDAVKIRAEDGRSVEGVDISPFINNLPGGKDTTCFS 319 (448)
T ss_pred CCc-EEEEECCCCccHHHHHHHHHhcccCCC--CCCCceEEEECCCceEEEecCCceEeCccchHHHhhCCCCCCCCccc
Confidence 357 99999999999999999996 776532 44566 111111111000 00 11222222222 222111 1
Q ss_pred ccchHHHHHHHHHHHHHHH---hHhhhccCCCCCCchh-----h----cChhhHHHHHHHHHHhhcCCCceEEEEeecCC
Q 003528 107 GEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQ-----A----ANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT 174 (813)
Q Consensus 107 ~~~~~~~erQrv~iA~ALa---dvLLLDEPtsgLD~~~-----~----a~~~l~~~v~ell~~L~~~~g~TIL~VtHD~~ 174 (813)
.++...-.-|-+.|.-||- ++||+||=|++--.-- . ....-..-+.+.++.|.++.|.+.|+|+--.+
T Consensus 320 T~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsg 399 (448)
T PF09818_consen 320 TENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSG 399 (448)
T ss_pred ccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccch
Confidence 1122223678888888887 9999999877521110 0 00001344667777787778999999987775
Q ss_pred CcccccCcceeeec
Q 003528 175 RTPLENLEPVLRED 188 (813)
Q Consensus 175 ~~~~~~~~~vll~~ 188 (813)
..... .|++++++
T Consensus 400 dy~~v-AD~Vi~Md 412 (448)
T PF09818_consen 400 DYFDV-ADRVIMMD 412 (448)
T ss_pred hhHhh-CCEEEEec
Confidence 54433 44555555
No 495
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=96.69 E-value=0.0013 Score=67.32 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=21.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 003528 43 VSIMGPQSSGKSTLLNHLFGTNF 65 (813)
Q Consensus 43 vaIiGpNGSGKSTLLn~L~Gl~~ 65 (813)
++|+|++|+|||||+|.|+|...
T Consensus 4 I~i~G~~g~GKSSLin~L~g~~~ 26 (197)
T cd04104 4 IAVTGESGAGKSSFINALRGVGH 26 (197)
T ss_pred EEEECCCCCCHHHHHHHHhccCC
Confidence 78999999999999999999876
No 496
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.68 E-value=0.0033 Score=64.24 Aligned_cols=25 Identities=40% Similarity=0.660 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 003528 41 AVVSIMGPQSSGKSTLLNHLFGTNF 65 (813)
Q Consensus 41 eivaIiGpNGSGKSTLLn~L~Gl~~ 65 (813)
-.++|+|++|||||||+|.|.|...
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~~ 66 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGADV 66 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcchh
Confidence 5799999999999999999999753
No 497
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=96.67 E-value=0.0012 Score=66.34 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=28.9
Q ss_pred eeeecceeeeccCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003528 27 FIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNF 65 (813)
Q Consensus 27 vL~~vsl~i~~~~GeivaIiGpNGSGKSTLLn~L~Gl~~ 65 (813)
+|+++++.. ..+++ +|+|++|||||||++.+.|-.+
T Consensus 9 ~~~~~~~~~--~~~ki-~ilG~~~~GKStLi~~l~~~~~ 44 (190)
T cd00879 9 VLSSLGLYN--KEAKI-LFLGLDNAGKTTLLHMLKDDRL 44 (190)
T ss_pred HHHHhhccc--CCCEE-EEECCCCCCHHHHHHHHhcCCC
Confidence 577777776 34555 9999999999999999998554
No 498
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.66 E-value=0.0012 Score=68.20 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003528 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (813)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (813)
++.+++|.|++|||||||.+.|.+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999999976
No 499
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.66 E-value=0.0061 Score=63.62 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHH
Q 003528 38 LSYAVVSIMGPQSSGKSTLLNHLF 61 (813)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~ 61 (813)
.+|.++.|.|+.|+|||||.-.++
T Consensus 14 ~~g~~~li~G~~G~GKt~~~~~~~ 37 (224)
T TIGR03880 14 PEGHVIVVIGEYGTGKTTFSLQFL 37 (224)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999966554
No 500
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.65 E-value=0.0012 Score=71.58 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 003528 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (813)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (813)
+++|.|+||||||||++.|.|+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~ 24 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG 24 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC
Confidence 589999999999999999999986
Done!