Query 003528
Match_columns 813
No_of_seqs 326 out of 1840
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 18:05:18 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003528.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1577-1580//hhsearch_pdb/003528hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rlf_A Maltose/maltodextrin im 1.0 1 1 232.9 11.0 182 7-204 1-224 (381)
2 3fvq_A Fe(3+) IONS import ATP- 1.0 1 1 231.8 10.5 182 7-205 2-230 (359)
3 3tui_C Methionine import ATP-b 1.0 1 1 231.3 11.2 189 3-204 18-254 (366)
4 3gfo_A Cobalt import ATP-bindi 1.0 1 1 228.5 10.9 194 1-211 1-241 (275)
5 2yyz_A Sugar ABC transporter, 1.0 1 1 223.8 9.6 181 8-205 2-225 (359)
6 2it1_A 362AA long hypothetical 1.0 1 1 223.2 10.2 182 8-205 2-225 (362)
7 1v43_A Sugar-binding transport 1.0 1 1 222.3 8.6 180 8-204 10-232 (372)
8 1z47_A CYSA, putative ABC-tran 1.0 1 1 222.0 9.8 183 6-204 11-236 (355)
9 1g29_1 MALK, maltose transport 1.0 1 1 221.2 11.5 181 8-204 2-230 (372)
10 1oxx_K GLCV, glucose, ABC tran 1.0 1 1 220.1 9.8 180 8-204 2-231 (353)
No 1
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=1.00 E-value=1 Score=232.89 Aligned_cols=182 Identities=16% Similarity=0.134 Sum_probs=143.0
Q ss_pred CCCEEEEEEEEEECCCCCCCEEEECCEEEECCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEE----------
Q ss_conf 7618999556992665443105530146516697189998499985999999998298999889997142----------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ---------- 76 (813)
Q Consensus 7 ~~~Iqi~dl~~~y~~~~~~~~L~~isl~i~g~~geivaIlGpnGSGKSTLLn~L~Gl~~~~m~~~~Gr~q---------- 76 (813)
|.+|++.|+++.|+. ..+++++||++ .+|++++|+|||||||||||++|+|+.. |++|+..
T Consensus 1 M~~l~~~~l~~~yg~---~~~L~~vsl~i--~~Ge~~~llGpsGsGKSTLLr~iaGl~~----p~~G~I~i~G~~~~~~~ 71 (381)
T 3rlf_A 1 MASVQLQNVTKAWGE---VVVSKDINLDI--HEGEFVVFVGPSGCGKSTLLRMIAGLET----ITSGDLFIGEKRMNDTP 71 (381)
T ss_dssp -CCEEEEEEEEEETT---EEEEEEEEEEE--CTTCEEEEECCTTSSHHHHHHHHHTSSC----CSEEEEEETTEECTTCC
T ss_pred CCEEEEEEEEEEECC---EEEEEEEEEEE--CCCCEEEEECCCCCHHHHHHHHHHCCCC----CCCEEEEECCEECCCCC
T ss_conf 978999848999899---99996568998--7998999996899559999999976998----89719999999998799
Q ss_pred ---ECCCEECCCCCC------CCCHHHHHHHHCCCCCCCCCCHHH--------------------HHHHHHHHHHHHH--
Q ss_conf ---014335343347------770257887518994232521079--------------------9999999999987--
Q 003528 77 ---TTKGIWMARCAG------IEPCTLIMDLEGTDGRERGEDDTA--------------------FEKQSALFALAVS-- 125 (813)
Q Consensus 77 ---tt~G~~~~~~~~------~e~~~~vld~~g~~~~er~e~~~~--------------------~EkQrv~iA~ALa-- 125 (813)
...|+++|.... .++..+.+...+.+..+..++..+ .||||++||+|++
T Consensus 72 ~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~ 151 (381)
T 3rlf_A 72 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAE 151 (381)
T ss_dssp GGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHCC
T ss_conf 77888899906875789999999999999775999899999999999885994165399257999999999999999819
Q ss_pred -HHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEEECCCEEEEECCCCCCCCC
Q ss_conf -5761026788989000018113999999999810699965999950699731235741335229938881385342377
Q 003528 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHME 204 (813)
Q Consensus 126 -dvLIlDEPt~~LD~~~~a~~~llk~V~e~l~~L~~~~~~tiLfVtHD~~~~~~~~~~~vll~~~GkI~~~gs~~e~~~~ 204 (813)
++||+|||+++||+.. +..+++.+.++.++.+.|+|+||||.+++...+++.+++.+ |+|...|++.+++..
T Consensus 152 P~lLLLDEPts~LD~~~------~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~-G~i~~~g~~~~l~~~ 224 (381)
T 3rlf_A 152 PSVFLLDEPLSNLDAAL------RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDA-GRVAQVGKPLELYHY 224 (381)
T ss_dssp CSEEEEESTTTTSCHHH------HHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEET-TEEEEEECHHHHHHC
T ss_pred CCEEEEECCCCCCCHHH------HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEEC-CEEEEEECHHHHHHC
T ss_conf 99999989876799999------99999999999986798899998899999986999999989-989998389999718
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=1.00 E-value=1 Score=231.76 Aligned_cols=182 Identities=14% Similarity=0.157 Sum_probs=142.1
Q ss_pred CCCEEEEEEEEEECCCCCCCEEEECCEEEECCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEE----------
Q ss_conf 7618999556992665443105530146516697189998499985999999998298999889997142----------
Q 003528 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ---------- 76 (813)
Q Consensus 7 ~~~Iqi~dl~~~y~~~~~~~~L~~isl~i~g~~geivaIlGpnGSGKSTLLn~L~Gl~~~~m~~~~Gr~q---------- 76 (813)
+++|++.|+++.|+. ..+++++||++ .+|++++|+|||||||||||++|+|+.. |++|+..
T Consensus 2 ~~~l~i~~ls~~y~~---~~~L~~vsl~i--~~Ge~~~llGpsGsGKSTLLr~iaGl~~----p~~G~I~i~G~~i~~~~ 72 (359)
T 3fvq_A 2 TAALHIGHLSKSFQN---TPVLNDISLSL--DPGEILFIIGASGCGKTTLLRCLAGFEQ----PDSGEISLSGKTIFSKN 72 (359)
T ss_dssp -CCEEEEEEEEEETT---EEEEEEEEEEE--CTTCEEEEEESTTSSHHHHHHHHHTSSC----CSEEEEEETTEEEESSS
T ss_pred CCEEEEEEEEEEECC---EEEEEEEEEEE--CCCCEEEEECCCCCHHHHHHHHHHCCCC----CCCCEEEECCEECCCCC
T ss_conf 768999969999899---88897538999--5998999999998059999999966998----99738999999975455
Q ss_pred -------ECCCEECCCCCCCCCHHHHHHHHCCC-------CCCCCCCHHH--------------------HHHHHHHHHH
Q ss_conf -------01433534334777025788751899-------4232521079--------------------9999999999
Q 003528 77 -------TTKGIWMARCAGIEPCTLIMDLEGTD-------GRERGEDDTA--------------------FEKQSALFAL 122 (813)
Q Consensus 77 -------tt~G~~~~~~~~~e~~~~vld~~g~~-------~~er~e~~~~--------------------~EkQrv~iA~ 122 (813)
...|+++|.. ...+.+.+.++.... ..+..++... .||||++||+
T Consensus 73 ~~~~~~~r~ig~vfQ~~-~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValAr 151 (359)
T 3fvq_A 73 TNLPVRERRLGYLVQEG-VLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALAR 151 (359)
T ss_dssp CBCCGGGSCCEEECTTC-CCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred CCCCHHHCCEEEEECCC-CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHH
T ss_conf 66554108889990787-57899999999999998769986899999999998869903755892457999999999999
Q ss_pred HHH---HHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEEECCCEEEEECCCC
Q ss_conf 987---57610267889890000181139999999998106999659999506997312357413352299388813853
Q 003528 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (813)
Q Consensus 123 ALa---dvLIlDEPt~~LD~~~~a~~~llk~V~e~l~~L~~~~~~tiLfVtHD~~~~~~~~~~~vll~~~GkI~~~gs~~ 199 (813)
|++ ++||+|||+++||+.. +..+.+.+.++.++.+.|+|+||||.+++...+++.+++.+ |+|...|++.
T Consensus 152 AL~~~P~lLLLDEPts~LD~~~------r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~-G~i~~~g~~~ 224 (359)
T 3fvq_A 152 ALAPDPELILLDEPFSALDEQL------RRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQ-GRILQTASPH 224 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHH------HHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEET-TEEEEEECHH
T ss_pred HHHCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEEC-CEEEEEECHH
T ss_conf 9973999999969743679999------99999999999985799899994999999987999999989-9899981899
Q ss_pred CCCCCC
Q ss_conf 423775
Q 003528 200 QAHMET 205 (813)
Q Consensus 200 e~~~~~ 205 (813)
+++.+.
T Consensus 225 el~~~p 230 (359)
T 3fvq_A 225 ELYRQP 230 (359)
T ss_dssp HHHHSC
T ss_pred HHHHCC
T ss_conf 997495
No 3
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=1.00 E-value=1 Score=231.32 Aligned_cols=189 Identities=12% Similarity=0.129 Sum_probs=144.9
Q ss_pred CCCCCCCEEEEEEEEEECCC-CCCCEEEECCEEEECCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEE-----
Q ss_conf 99997618999556992665-443105530146516697189998499985999999998298999889997142-----
Q 003528 3 KGEECCSTQLIDGDGTFNVS-GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----- 76 (813)
Q Consensus 3 ~~~~~~~Iqi~dl~~~y~~~-~~~~~L~~isl~i~g~~geivaIlGpnGSGKSTLLn~L~Gl~~~~m~~~~Gr~q----- 76 (813)
...++++|++.|+++.|+.. ....+++++||++ .+|++++|+||||||||||+++|+|+.. |++|+..
T Consensus 18 ~~~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i--~~Gei~~IiGpnGaGKSTLlr~i~GL~~----p~~G~I~i~G~~ 91 (366)
T 3tui_C 18 DDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHV--PAGQIYGVIGASGAGKSTLIRCVNLLER----PTEGSVLVDGQE 91 (366)
T ss_dssp -----CCEEEEEEEEEEECSSSEEEEEEEEEEEE--CTTCEEEEECCTTSSHHHHHHHHHTSSC----CSEEEEEETTEE
T ss_pred CCCCCCEEEEEEEEEEECCCCCCEEEEEEEEEEE--CCCCEEEEECCCCCHHHHHHHHHHCCCC----CCCEEEEECCEE
T ss_conf 8899865999848999389887737887469998--4898999995899559999999966999----996299999999
Q ss_pred -------------ECCCEECCCCCC------CCCHHHHHHHHCCCCCCCCCCHHH--------------------HHHHH
Q ss_conf -------------014335343347------770257887518994232521079--------------------99999
Q 003528 77 -------------TTKGIWMARCAG------IEPCTLIMDLEGTDGRERGEDDTA--------------------FEKQS 117 (813)
Q Consensus 77 -------------tt~G~~~~~~~~------~e~~~~vld~~g~~~~er~e~~~~--------------------~EkQr 117 (813)
...|+++|.... .++..+.+...+.+..+..++... .||||
T Consensus 92 i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQR 171 (366)
T 3tui_C 92 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQR 171 (366)
T ss_dssp CSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHH
T ss_pred CCCCCHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHH
T ss_conf 87589879998738689992787568888999999999986599878999999999997699347619945589999999
Q ss_pred HHHHHHHH---HHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEEECCCEEEE
Q ss_conf 99999987---576102678898900001811399999999981069996599995069973123574133522993888
Q 003528 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (813)
Q Consensus 118 v~iA~ALa---dvLIlDEPt~~LD~~~~a~~~llk~V~e~l~~L~~~~~~tiLfVtHD~~~~~~~~~~~vll~~~GkI~~ 194 (813)
++||+|++ ++||+||||++||+.. ...+++++.++.++.+.|+|+|+||++.+...+++.+++.+ |+|+.
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~------~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~-G~iv~ 244 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPAT------TRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISN-GELIE 244 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHH------HHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEEC-CEEEE
T ss_conf 999999966999999979875689999------99999999999973799999995689999996999999989-98999
Q ss_pred ECCCCCCCCC
Q ss_conf 1385342377
Q 003528 195 SVPKPQAHME 204 (813)
Q Consensus 195 ~gs~~e~~~~ 204 (813)
.|++.+++.+
T Consensus 245 ~g~~~ev~~~ 254 (366)
T 3tui_C 245 QDTVSEVFSH 254 (366)
T ss_dssp CCBHHHHHSS
T ss_pred ECCHHHHHHC
T ss_conf 7589999718
No 4
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=1.00 E-value=1 Score=228.45 Aligned_cols=194 Identities=12% Similarity=0.106 Sum_probs=142.8
Q ss_pred CCCCCCCCCEEEEEEEEEECCCCCCCEEEECCEEEECCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEE----
Q ss_conf 9999997618999556992665443105530146516697189998499985999999998298999889997142----
Q 003528 1 MAKGEECCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ---- 76 (813)
Q Consensus 1 m~~~~~~~~Iqi~dl~~~y~~~~~~~~L~~isl~i~g~~geivaIlGpnGSGKSTLLn~L~Gl~~~~m~~~~Gr~q---- 76 (813)
|+|. .++|++.|+++.|+.. ..+++++||++ .+|++++|+||||||||||+++|+|+.+ |++|+..
T Consensus 1 M~m~--~~~l~i~~ls~~y~~~--~~~L~~isl~i--~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~----p~~G~I~~~G~ 70 (275)
T 3gfo_A 1 MSLE--DYILKVEELNYNYSDG--THALKGINMNI--KRGEVTAILGGNGVGKSTLFQNFNGILK----PSSGRILFDNK 70 (275)
T ss_dssp ---C--CEEEEEEEEEEECTTS--CEEEEEEEEEE--ETTSEEEEECCTTSSHHHHHHHHTTSSC----CSEEEEEETTE
T ss_pred CCCC--CCEEEEEEEEEEECCC--CEEEEEEEEEE--CCCCEEEEECCCCCCHHHHHHHHHCCCC----CCCEEEEECCE
T ss_conf 9986--7379998789997998--86787407999--1898999999999879999999976998----99749999999
Q ss_pred -------------ECCCEECCCCCC-------CCCHHHHHHHHCCCCCCCCCCHHH--------------------HHHH
Q ss_conf -------------014335343347-------770257887518994232521079--------------------9999
Q 003528 77 -------------TTKGIWMARCAG-------IEPCTLIMDLEGTDGRERGEDDTA--------------------FEKQ 116 (813)
Q Consensus 77 -------------tt~G~~~~~~~~-------~e~~~~vld~~g~~~~er~e~~~~--------------------~EkQ 116 (813)
...|.++|.... .++..+.....+.+..+..++... .|||
T Consensus 71 ~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQ 150 (275)
T 3gfo_A 71 PIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKK 150 (275)
T ss_dssp ECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHH
T ss_pred ECCCCCCCHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHH
T ss_conf 88765320899827579997175310254819999998998769998999999999999759904553890109999999
Q ss_pred HHHHHHHHH---HHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEEECCCEEE
Q ss_conf 999999987---57610267889890000181139999999998106999659999506997312357413352299388
Q 003528 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (813)
Q Consensus 117 rv~iA~ALa---dvLIlDEPt~~LD~~~~a~~~llk~V~e~l~~L~~~~~~tiLfVtHD~~~~~~~~~~~vll~~~GkI~ 193 (813)
|++||+|++ ++||+||||++||+.. ...+++++.++.++.+.|+|+++||++.+...+++.+++.+ |+|+
T Consensus 151 Rv~iAraL~~~P~lLlLDEPts~LD~~~------~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~-G~i~ 223 (275)
T 3gfo_A 151 RVAIAGVLVMEPKVLILDEPTAGLDPMG------VSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKE-GRVI 223 (275)
T ss_dssp HHHHHHHHTTCCSEEEEECTTTTCCHHH------HHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEET-TEEE
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEEC-CEEE
T ss_conf 9999999974999999989611489999------99999999999863799999994699999996999999989-9999
Q ss_pred EECCCCCCCCCCCCHHHH
Q ss_conf 813853423775301020
Q 003528 194 DSVPKPQAHMETPLSEFF 211 (813)
Q Consensus 194 ~~gs~~e~~~~~~l~d~f 211 (813)
..|++.+++.+..+.+.+
T Consensus 224 ~~g~~~~~~~~~~~~~~~ 241 (275)
T 3gfo_A 224 LQGNPKEVFAEKEVIRKV 241 (275)
T ss_dssp EEECHHHHTHHHHHHHHH
T ss_pred EECCHHHHHCCHHHHHHC
T ss_conf 977999985197789971
No 5
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=223.77 Aligned_cols=181 Identities=14% Similarity=0.112 Sum_probs=139.6
Q ss_pred CCEEEEEEEEEECCCCCCCEEEECCEEEECCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEE-----------
Q ss_conf 618999556992665443105530146516697189998499985999999998298999889997142-----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----------- 76 (813)
Q Consensus 8 ~~Iqi~dl~~~y~~~~~~~~L~~isl~i~g~~geivaIlGpnGSGKSTLLn~L~Gl~~~~m~~~~Gr~q----------- 76 (813)
.+|++.|+++.|+. ..++++++|++ .+|++++|+|||||||||||++|+|+.. |++|+..
T Consensus 2 ~~l~~~~l~~~y~~---~~vl~~vsl~i--~~Ge~~~llGpnGsGKSTLLr~iaGl~~----p~~G~I~i~g~~i~~~~~ 72 (359)
T 2yyz_A 2 PSIRVVNLKKYFGK---VKAVDGVSFEV--KDGEFVALLGPSGCGKTTTLLMLAGIYK----PTSGEIYFDDVLVNDIPP 72 (359)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEE--CTTCEEEEECSTTSSHHHHHHHHHTSSC----CSEEEEEETTEECTTSCG
T ss_pred CEEEEEEEEEEECC---EEEEEEEEEEE--CCCCEEEEECCCCCHHHHHHHHHHCCCC----CCCCEEEECCEECCCCCH
T ss_conf 58999979999899---88896558998--6998999996898239999999977998----896299999999987986
Q ss_pred --ECCCEECCCCCCCCCHHHHHHHHCCC-------CCCCCCCHHH--------------------HHHHHHHHHHHHH--
Q ss_conf --01433534334777025788751899-------4232521079--------------------9999999999987--
Q 003528 77 --TTKGIWMARCAGIEPCTLIMDLEGTD-------GRERGEDDTA--------------------FEKQSALFALAVS-- 125 (813)
Q Consensus 77 --tt~G~~~~~~~~~e~~~~vld~~g~~-------~~er~e~~~~--------------------~EkQrv~iA~ALa-- 125 (813)
...|.++|... ..+.+.+.++.... ..+..++..+ .||||+++|+|++
T Consensus 73 ~~r~ig~v~Q~~~-l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~ 151 (359)
T 2yyz_A 73 KYREVGMVFQNYA-LYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQ 151 (359)
T ss_dssp GGTTEEEECSSCC-CCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred HHCCEEEEECCCC-CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHCC
T ss_conf 4584899906864-579988999999999765998799999999999886995376289346999999999999999719
Q ss_pred -HHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEEECCCEEEEECCCCCCCCC
Q ss_conf -5761026788989000018113999999999810699965999950699731235741335229938881385342377
Q 003528 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHME 204 (813)
Q Consensus 126 -dvLIlDEPt~~LD~~~~a~~~llk~V~e~l~~L~~~~~~tiLfVtHD~~~~~~~~~~~vll~~~GkI~~~gs~~e~~~~ 204 (813)
++||+|||+++||+.. +..+.+.+.++.++.+.|+|+|+||.+++...+++.+++.+ |+|...|++.+++.+
T Consensus 152 P~lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~-G~i~~~g~~~~l~~~ 224 (359)
T 2yyz_A 152 PKVLLFDEPLSNLDANL------RMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQ-GKLVQYGTPDEVYDS 224 (359)
T ss_dssp CSEEEEESTTTTSCHHH------HHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEET-TEEEEEECHHHHHHS
T ss_pred CCEEEEECCCCCCCHHH------HHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEEC-CEEEEECCHHHHHHC
T ss_conf 99899989753689999------99999999999985699899991899999986999999989-989996799999738
Q ss_pred C
Q ss_conf 5
Q 003528 205 T 205 (813)
Q Consensus 205 ~ 205 (813)
.
T Consensus 225 p 225 (359)
T 2yyz_A 225 P 225 (359)
T ss_dssp C
T ss_pred C
T ss_conf 3
No 6
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=1.00 E-value=1 Score=223.17 Aligned_cols=182 Identities=16% Similarity=0.146 Sum_probs=138.9
Q ss_pred CCEEEEEEEEEECCCCCCCEEEECCEEEECCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEE-----------
Q ss_conf 618999556992665443105530146516697189998499985999999998298999889997142-----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----------- 76 (813)
Q Consensus 8 ~~Iqi~dl~~~y~~~~~~~~L~~isl~i~g~~geivaIlGpnGSGKSTLLn~L~Gl~~~~m~~~~Gr~q----------- 76 (813)
.+|++.|+++.|+. ..++++++|++ .+|++++|+|||||||||||++|+|+.. |++|+..
T Consensus 2 ~~l~~~~l~~~y~~---~~vl~~vsl~i--~~Ge~~~llGpnGsGKSTLLr~iaGl~~----p~~G~I~i~g~~i~~~~~ 72 (362)
T 2it1_A 2 VEIKLENIVKKFGN---FTALNNINLKI--KDGEFMALLGPSGSGKSTLLYTIAGIYK----PTSGKIYFDEKDVTELPP 72 (362)
T ss_dssp CCEEEEEEEEESSS---SEEEEEEEEEE--CTTCEEEEECCTTSSHHHHHHHHHTSSC----CSEEEEEETTEECTTSCG
T ss_pred CEEEEEEEEEEECC---EEEEEEEEEEE--CCCCEEEEECCCCCHHHHHHHHHHCCCC----CCCEEEEECCEECCCCCH
T ss_conf 67999969999899---78897558999--7998999999999359999999966998----885099999999986997
Q ss_pred --ECCCEECCCCCC------CCCHHHHHHHHCCCCCCCCCCHHH--------------------HHHHHHHHHHHHH---
Q ss_conf --014335343347------770257887518994232521079--------------------9999999999987---
Q 003528 77 --TTKGIWMARCAG------IEPCTLIMDLEGTDGRERGEDDTA--------------------FEKQSALFALAVS--- 125 (813)
Q Consensus 77 --tt~G~~~~~~~~------~e~~~~vld~~g~~~~er~e~~~~--------------------~EkQrv~iA~ALa--- 125 (813)
...|.++|.... .++..+.+...+.+..+..++..+ .||||+++|+|++
T Consensus 73 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P 152 (362)
T 2it1_A 73 KDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEP 152 (362)
T ss_dssp GGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred HHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCHHHCCHHHHHHHHHHHHHHCCC
T ss_conf 57848999467645789879999999987648987999999999998859904760893038999999999999997299
Q ss_pred HHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEEECCCEEEEECCCCCCCCCC
Q ss_conf 57610267889890000181139999999998106999659999506997312357413352299388813853423775
Q 003528 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMET 205 (813)
Q Consensus 126 dvLIlDEPt~~LD~~~~a~~~llk~V~e~l~~L~~~~~~tiLfVtHD~~~~~~~~~~~vll~~~GkI~~~gs~~e~~~~~ 205 (813)
++||+|||+++||+.. +..+.+.+.++.++.+.|+|+|+||.+++...+++.+++.+ |+|...|++.+++.+.
T Consensus 153 ~lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~-G~i~~~g~~~~~~~~p 225 (362)
T 2it1_A 153 EVLLLDEPLSNLDALL------RLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIRE-GEILQVGTPDEVYYKP 225 (362)
T ss_dssp SEEEEESGGGGSCHHH------HHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEET-TEEEEEECHHHHHHSC
T ss_pred CEEEEECCCCCCCHHH------HHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEEC-CEEEEECCHHHHHHCC
T ss_conf 9999989543689999------99999999999975798999988888999986999999989-9899976999997383
No 7
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=1.00 E-value=1 Score=222.33 Aligned_cols=180 Identities=14% Similarity=0.142 Sum_probs=139.6
Q ss_pred CCEEEEEEEEEECCCCCCCEEEECCEEEECCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEE-----------
Q ss_conf 618999556992665443105530146516697189998499985999999998298999889997142-----------
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----------- 76 (813)
Q Consensus 8 ~~Iqi~dl~~~y~~~~~~~~L~~isl~i~g~~geivaIlGpnGSGKSTLLn~L~Gl~~~~m~~~~Gr~q----------- 76 (813)
.+|++.|+++.|+. ..++++++|++ .+|++++|+|||||||||||++|+|+.. |++|+..
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsl~i--~~Ge~~~llGpnGsGKSTLLr~iaGl~~----p~~G~I~i~g~~i~~~~~ 80 (372)
T 1v43_A 10 VEVKLENLTKRFGN---FTAVNKLNLTI--KDGEFLVLLGPSGCGKTTTLRMIAGLEE----PTEGRIYFGDRDVTYLPP 80 (372)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEE--CTTCEEEEECCTTSSHHHHHHHHHTSSC----CSEEEEEETTEECTTSCG
T ss_pred EEEEEEEEEEEECC---EEEEEEEEEEE--CCCCEEEEECCCCCHHHHHHHHHHCCCC----CCCEEEEECCEECCCCCH
T ss_conf 16999989999899---78886548999--7998999999999869999999976998----884099999999987986
Q ss_pred --ECCCEECCCCCCCCCHHHHHHHHCCC-------CCCCCCCHHHH--------------------HHHHHHHHHHHH--
Q ss_conf --01433534334777025788751899-------42325210799--------------------999999999987--
Q 003528 77 --TTKGIWMARCAGIEPCTLIMDLEGTD-------GRERGEDDTAF--------------------EKQSALFALAVS-- 125 (813)
Q Consensus 77 --tt~G~~~~~~~~~e~~~~vld~~g~~-------~~er~e~~~~~--------------------EkQrv~iA~ALa-- 125 (813)
...|.++|... ..+.+.+.++.... ..+..++.... ||||+++|+|++
T Consensus 81 ~~r~ig~v~Q~~~-l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~ 159 (372)
T 1v43_A 81 KDRNISMVFQSYA-VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVE 159 (372)
T ss_dssp GGGTEEEEEC-------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTC
T ss_pred HHCCEEEEECCCC-CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCC
T ss_conf 5685899916764-579988999999888764898799999999999985992486399103999999999999999619
Q ss_pred -HHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEEECCCEEEEECCCCCCCCC
Q ss_conf -5761026788989000018113999999999810699965999950699731235741335229938881385342377
Q 003528 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHME 204 (813)
Q Consensus 126 -dvLIlDEPt~~LD~~~~a~~~llk~V~e~l~~L~~~~~~tiLfVtHD~~~~~~~~~~~vll~~~GkI~~~gs~~e~~~~ 204 (813)
++||+|||+++||+.. +..+.+.+.++.++.+.|+|+|+||.+++...+++.+++.+ |+|...|++.+++.+
T Consensus 160 P~lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~-G~i~~~g~~~~l~~~ 232 (372)
T 1v43_A 160 PDVLLMDEPLSNLDAKL------RVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNR-GQLLQIGSPTEVYLR 232 (372)
T ss_dssp CSEEEEESTTTTSCHHH------HHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEET-TEEEEEECHHHHHHC
T ss_pred CCEEEECCCCCCCCHHH------HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEEC-CEEEEECCHHHHHHC
T ss_conf 99999719874579999------99999999999972898899994999999986999999989-989985899999738
No 8
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=1.00 E-value=1 Score=222.02 Aligned_cols=183 Identities=13% Similarity=0.142 Sum_probs=139.8
Q ss_pred CCCCEEEEEEEEEE-CCCCCCCEEEECCEEEECCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEE--------
Q ss_conf 97618999556992-665443105530146516697189998499985999999998298999889997142--------
Q 003528 6 ECCSTQLIDGDGTF-NVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ-------- 76 (813)
Q Consensus 6 ~~~~Iqi~dl~~~y-~~~~~~~~L~~isl~i~g~~geivaIlGpnGSGKSTLLn~L~Gl~~~~m~~~~Gr~q-------- 76 (813)
..++|++.|+++.| +. ..+++++||++ .+|++++|+|||||||||||++|+|+.. |++|+..
T Consensus 11 ~~~~l~~~~l~~~y~g~---~~vl~~vsl~i--~~Ge~~~llGpnGsGKSTLLr~iaGl~~----p~~G~I~i~g~~i~~ 81 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGG---ARSVRGVSFQI--REGEMVGLLGPSGSGKTTILRLIAGLER----PTKGDVWIGGKRVTD 81 (355)
T ss_dssp CCEEEEEEEEEECCTTS---TTCEEEEEEEE--ETTCEEEEECSTTSSHHHHHHHHHTSSC----CSEEEEEETTEECTT
T ss_pred CCCEEEEEEEEEEECCC---CEEEEEEEEEE--CCCCEEEEECCCCCCHHHHHHHHHCCCC----CCCCEEEECCEECCC
T ss_conf 98669999799997599---78996348999--7997999998999709999999967998----896199999999986
Q ss_pred -----ECCCEECCCCCC------CCCHHHHHHHHCCCCCCCCCCHHH--------------------HHHHHHHHHHHHH
Q ss_conf -----014335343347------770257887518994232521079--------------------9999999999987
Q 003528 77 -----TTKGIWMARCAG------IEPCTLIMDLEGTDGRERGEDDTA--------------------FEKQSALFALAVS 125 (813)
Q Consensus 77 -----tt~G~~~~~~~~------~e~~~~vld~~g~~~~er~e~~~~--------------------~EkQrv~iA~ALa 125 (813)
...|.++|.... .++..+.+...+.+..+..++..+ .||||+++|+|++
T Consensus 82 ~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~ 161 (355)
T 1z47_A 82 LPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALA 161 (355)
T ss_dssp CCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred CCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 87645748999268635789889999999997749987899999999998769945860992018999999999999997
Q ss_pred ---HHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEEECCCEEEEECCCCCCC
Q ss_conf ---57610267889890000181139999999998106999659999506997312357413352299388813853423
Q 003528 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (813)
Q Consensus 126 ---dvLIlDEPt~~LD~~~~a~~~llk~V~e~l~~L~~~~~~tiLfVtHD~~~~~~~~~~~vll~~~GkI~~~gs~~e~~ 202 (813)
++||+|||+++||+.. +..+.+.+.++.++.+.|+|+|+||.+++...+++.+++.+ |+|...+++.+++
T Consensus 162 ~~P~lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~-G~i~~~g~~~~l~ 234 (355)
T 1z47_A 162 PRPQVLLFDEPFAAIDTQI------RRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHE-GNVEQFGTPEEVY 234 (355)
T ss_dssp TCCSEEEEESTTCCSSHHH------HHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEET-TEEEEEECHHHHH
T ss_pred CCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEEC-CEEEEECCHHHHH
T ss_conf 3999899969743689999------99999999999986699999997999999986999999989-9999985999997
Q ss_pred CC
Q ss_conf 77
Q 003528 203 ME 204 (813)
Q Consensus 203 ~~ 204 (813)
.+
T Consensus 235 ~~ 236 (355)
T 1z47_A 235 EK 236 (355)
T ss_dssp HS
T ss_pred HC
T ss_conf 48
No 9
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=1.00 E-value=1 Score=221.17 Aligned_cols=181 Identities=13% Similarity=0.125 Sum_probs=138.2
Q ss_pred CCEEEEEEEEEECCCCCCCEEEECCEEEECCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEE------E----
Q ss_conf 618999556992665443105530146516697189998499985999999998298999889997142------0----
Q 003528 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------T---- 77 (813)
Q Consensus 8 ~~Iqi~dl~~~y~~~~~~~~L~~isl~i~g~~geivaIlGpnGSGKSTLLn~L~Gl~~~~m~~~~Gr~q------t---- 77 (813)
.+|++.|+++.|+. ..++++++|++ .+|++++|+|||||||||||++|+|+.. |++|+.. +
T Consensus 2 ~~l~~~~l~~~y~~---~~vl~~vsl~i--~~Ge~~~llGpnGsGKSTLLr~iaGl~~----p~~G~I~i~g~~~~~~~~ 72 (372)
T 1g29_1 2 AGVRLVDVWKVFGE---VTAVREMSLEV--KDGEFMILLGPSGCGKTTTLRMIAGLEE----PSRGQIYIGDKLVADPEK 72 (372)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEE--ETTCEEEEECSTTSSHHHHHHHHHTSSC----CSEEEEEETTEEEEEGGG
T ss_pred CEEEEEEEEEEECC---EEEEEEEEEEE--CCCCEEEEECCCCCHHHHHHHHHHCCCC----CCCCEEEECCEECCCCCC
T ss_conf 78999969999899---88883138999--6998999999999379999999976998----996389999999865444
Q ss_pred ---------CCCEECCCCCC------CCCHHHHHHHHCCCCCCCCCCHHH--------------------HHHHHHHHHH
Q ss_conf ---------14335343347------770257887518994232521079--------------------9999999999
Q 003528 78 ---------TKGIWMARCAG------IEPCTLIMDLEGTDGRERGEDDTA--------------------FEKQSALFAL 122 (813)
Q Consensus 78 ---------t~G~~~~~~~~------~e~~~~vld~~g~~~~er~e~~~~--------------------~EkQrv~iA~ 122 (813)
..|.++|.... .++..+.+...+.+..+..++... .||||+++|+
T Consensus 73 ~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalAr 152 (372)
T 1g29_1 73 GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGR 152 (372)
T ss_dssp TEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred CCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 34588767988999278756899889999999997759997999999999999879913760891129999999999999
Q ss_pred HHH---HHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEEECCCEEEEECCCC
Q ss_conf 987---57610267889890000181139999999998106999659999506997312357413352299388813853
Q 003528 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (813)
Q Consensus 123 ALa---dvLIlDEPt~~LD~~~~a~~~llk~V~e~l~~L~~~~~~tiLfVtHD~~~~~~~~~~~vll~~~GkI~~~gs~~ 199 (813)
|++ ++||+|||+++||+.. +..+.+.+.++.++.+.|+|+|+||.+++...+++.+++.+ |+|...|++.
T Consensus 153 AL~~~P~lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~-G~i~~~g~~~ 225 (372)
T 1g29_1 153 AIVRKPQVFLMDEPLSNLDAKL------RVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNR-GVLQQVGSPD 225 (372)
T ss_dssp HHHTCCSEEEEECTTTTSCHHH------HHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEET-TEEEEEECHH
T ss_pred HHHCCCCEEEECCCCCCCCHHH------HHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEEC-CEEEEECCHH
T ss_conf 9865899999879875689999------99999999999986598999988998999986999999959-9899848999
Q ss_pred CCCCC
Q ss_conf 42377
Q 003528 200 QAHME 204 (813)
Q Consensus 200 e~~~~ 204 (813)
+++.+
T Consensus 226 ~l~~~ 230 (372)
T 1g29_1 226 EVYDK 230 (372)
T ss_dssp HHHHS
T ss_pred HHHHC
T ss_conf 99738
No 10
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=1.00 E-value=1 Score=220.09 Aligned_cols=180 Identities=13% Similarity=0.107 Sum_probs=137.8
Q ss_pred CCEEEEEEEEEECCCCCCC--EEEECCEEEECCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEE------E--
Q ss_conf 6189995569926654431--05530146516697189998499985999999998298999889997142------0--
Q 003528 8 CSTQLIDGDGTFNVSGIEH--FIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ------T-- 77 (813)
Q Consensus 8 ~~Iqi~dl~~~y~~~~~~~--~L~~isl~i~g~~geivaIlGpnGSGKSTLLn~L~Gl~~~~m~~~~Gr~q------t-- 77 (813)
.+|++.|+++.|+. .. ++++++|++ .+|++++|+|||||||||||++|+|+.. |++|+.. +
T Consensus 2 ~~l~i~~l~~~y~~---~~~~vl~~vsl~i--~~Ge~~~llGpnGsGKSTLLr~iaGl~~----p~~G~I~i~g~~i~~~ 72 (353)
T 1oxx_K 2 VRIIVKNVSKVFKK---GKVVALDNVNINI--ENGERFGILGPSGAGKTTFMRIIAGLDV----PSTGELYFDDRLVASN 72 (353)
T ss_dssp CCEEEEEEEEEEGG---GTEEEEEEEEEEE--CTTCEEEEECSCHHHHHHHHHHHHTSSC----CSEEEEEETTEEEEET
T ss_pred CEEEEEEEEEEECC---EEEEEEECEEEEE--CCCCEEEEECCCCCCHHHHHHHHHCCCC----CCCEEEEECCEECCCC
T ss_conf 68999869999899---8201481348999--7998999997999709999999967998----8840999999998655
Q ss_pred ----------CCCEECCCCCCCCCHHHHHHHHCC-------CCCCCCCCHHH--------------------HHHHHHHH
Q ss_conf ----------143353433477702578875189-------94232521079--------------------99999999
Q 003528 78 ----------TKGIWMARCAGIEPCTLIMDLEGT-------DGRERGEDDTA--------------------FEKQSALF 120 (813)
Q Consensus 78 ----------t~G~~~~~~~~~e~~~~vld~~g~-------~~~er~e~~~~--------------------~EkQrv~i 120 (813)
..|.++|... ..+.+.+.++... +..+..++..+ .||||+++
T Consensus 73 ~~~~~~~~~r~ig~v~Q~~~-l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRval 151 (353)
T 1oxx_K 73 GKLIVPPEDRKIGMVFQTWA-LYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVAL 151 (353)
T ss_dssp TEESSCGGGSCEEEEETTSC-CCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHH
T ss_pred CCCCCCHHHCCEEEEECCCC-CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHH
T ss_conf 54568764397899947874-67998999999999987599989999999999988699037509935699999999999
Q ss_pred HHHHH---HHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEEECCCEEEEECC
Q ss_conf 99987---576102678898900001811399999999981069996599995069973123574133522993888138
Q 003528 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (813)
Q Consensus 121 A~ALa---dvLIlDEPt~~LD~~~~a~~~llk~V~e~l~~L~~~~~~tiLfVtHD~~~~~~~~~~~vll~~~GkI~~~gs 197 (813)
|+|++ ++||+|||+++||+.. +..+.+.+.++.++.+.|+|+|+||.+++...+++.+++.+ |+|...++
T Consensus 152 AraL~~~P~lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~-G~i~~~g~ 224 (353)
T 1oxx_K 152 ARALVKDPSLLLLDEPFSNLDARM------RDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVK-GKLVQVGK 224 (353)
T ss_dssp HHHHTTCCSEEEEESTTTTSCGGG------HHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEEC-CEEEEECC
T ss_conf 999970999999979743489999------99999999999986699899992899999986999999989-98999769
Q ss_pred CCCCCCC
Q ss_conf 5342377
Q 003528 198 KPQAHME 204 (813)
Q Consensus 198 ~~e~~~~ 204 (813)
+.+++.+
T Consensus 225 ~~~l~~~ 231 (353)
T 1oxx_K 225 PEDLYDN 231 (353)
T ss_dssp HHHHHHS
T ss_pred HHHHHHC
T ss_conf 9999748
Done!