BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003529
(813 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 33 FVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNPSIA 92
F CP++ ++M+DPV + GQT+ER +I+KW + G K CP +Q+ L L P+
Sbjct: 9 FRCPISLELMKDPVIVSTGQTYERSSIQKWL----DAGHK-TCPKSQETLLHAGLTPNYV 63
Query: 93 LRNTIEEWNARN 104
L++ I W N
Sbjct: 64 LKSLIALWCESN 75
>pdb|2YU4|A Chain A, Solution Structure Of The Sp-Ring Domain In Non-Smc
Element 2 Homolog (Mms21, S. Cerevisiae)
Length = 94
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 32 AFVCPLTKQVMRDPVTLE-NGQTFEREAIEKWFKECRENGRKPVCP---LTQKELRSTDL 87
F CP+TK+ M+ PV + G T+E +AI + + ++ +K CP + ++R +DL
Sbjct: 7 GFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDL 66
Query: 88 NPSIALRNTIEEWNAR 103
ALR IE N +
Sbjct: 67 IQDEALRRAIENHNKK 82
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 680 LLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLL 739
+++ +L+ LL H + KVV +L A+ ++ G DI+ V++ C A LL
Sbjct: 230 VIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVT-GDDIQTQVILNCSALQSL---LHLL 285
Query: 740 EKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 798
E++++ A W + I + + D N+ AL+ Q A++RTR+ A A+ +
Sbjct: 286 SSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITN 344
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 680 LLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLL 739
+++ +L+ LL H + KVV +L A+ ++ G DI+ V++ C A LL
Sbjct: 227 VIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVT-GDDIQTQVILNCSALQSL---LHLL 282
Query: 740 EKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 798
E++++ A W + I + + D N+ AL+ Q A++RTR+ A A+ +
Sbjct: 283 SSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITN 341
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 687 EKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENL 746
++L+ LL H + V +L A+ ++ G D++ V++ G+ P L +LL EN+
Sbjct: 214 KRLVELLSHESTLVQTPALRAVGNIVT-GNDLQTQVVI---NAGVLPALRLLLSSPKENI 269
Query: 747 QRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 798
++ A W + I + + D N+ LV + A+Y+T++ A A+ +
Sbjct: 270 KKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 321
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 687 EKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENL 746
++L+ LL H + V +L A+ ++ G D++ V++ G+ P L +LL EN+
Sbjct: 214 KRLVELLSHESTLVQTPALRAVGNIVT-GNDLQTQVVI---NAGVLPALRLLLSSPKENI 269
Query: 747 QRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 798
++ A W + I + + D N+ LV + A+Y+T++ A A+ +
Sbjct: 270 KKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 321
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 687 EKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENL 746
++L+ LL H + V +L A+ ++ G D++ V++ G+ P L +LL EN+
Sbjct: 302 KRLVELLSHESTLVQTPALRAVGNIVT-GNDLQTQVVINA---GVLPALRLLLSSPKENI 357
Query: 747 QRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 798
++ A W + I + + D N+ LV + A+Y+T++ A A+ +
Sbjct: 358 KKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 409
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 11/167 (6%)
Query: 234 GAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQET 293
GA+ LV + SS +E +L ++A L+N+ N Q + P L Q+L P E
Sbjct: 54 GALPALVQLLSSPNEQIL--QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 111
Query: 294 KLSLAAF-LGDLALNSDVKVLVARTVGS--CLINIMKSGNMQAREAALKALNQISS-CEP 349
L A + L ++A + ++ G+ L+ ++ S N Q + AL AL+ I+S
Sbjct: 112 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171
Query: 350 SAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD 396
+ +I AG LP LV+ L + L L L+N+ + G++
Sbjct: 172 QIQAVIDAGALPALVQLLSSPNEQILQEAL-----WALSNIASGGNE 213
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 679 CLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVL 738
+++ A+ L+ LL NE++++ +L ALS + G + Q V+ G P L L
Sbjct: 49 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA----GALPALVQL 104
Query: 739 LEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 798
L E + + A+W + I + + D ALV + + Q A AL +
Sbjct: 105 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164
Query: 799 I 799
I
Sbjct: 165 I 165
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 679 CLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVL 738
+++ A+ L+ LL NE++++ +L ALS + G + Q V+ G P L L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA----GALPALVQL 188
Query: 739 LEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 798
L E + + A+W + I + + + L H + + ++ A+ AL+
Sbjct: 189 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248
Query: 799 I 799
+
Sbjct: 249 L 249
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 687 EKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENL 746
++L+ LL H + V +L A+ ++ G D++ V++ G+ P L +LL EN+
Sbjct: 215 KRLVELLSHESTLVQTPALRAVGNIVT-GNDLQTQVVI---NAGVLPALRLLLSSPKENI 270
Query: 747 QRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 798
++ A W + I + + D N+ LV + A+ +T++ A A+ +
Sbjct: 271 KKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISN 322
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 687 EKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENL 746
++L+ LL H + V +L A+ ++ G D++ V++ G+ P L +LL EN+
Sbjct: 216 KRLVELLSHESTLVQTPALRAVGNIVT-GNDLQTQVVI---NAGVLPALRLLLSSPKENI 271
Query: 747 QRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 798
++ A W + I + + D N+ LV + A+ +T++ A A+ +
Sbjct: 272 KKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISN 323
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 687 EKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENL 746
++L+ LL H + V +L A+ ++ G D++ V++ G+ P L +LL EN+
Sbjct: 216 KRLVELLSHESTLVQTPALRAVGNIVT-GNDLQTQVVI---NAGVLPALRLLLSSPKENI 271
Query: 747 QRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 798
++ A W + I + + D N+ LV + A+ +T++ A A+ +
Sbjct: 272 KKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISN 323
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 687 EKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENL 746
++L+ LL H + V +L A+ ++ G D++ V++ G+ P L +LL EN+
Sbjct: 215 KRLVELLSHESTLVQTPALRAVGNIVT-GNDLQTQVVI---NAGVLPALRLLLSSPKENI 270
Query: 747 QRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 798
++ A W + I + + D N+ LV + A+ +T++ A A+ +
Sbjct: 271 KKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISN 322
>pdb|1XM9|A Chain A, Structure Of The Armadillo Repeat Domain Of Plakophilin 1
Length = 457
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 131 YVQYFCQSSRSNKHVVHNSELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQ 190
Y+Q+ C S K V+ I ++D+L+S ++ V+ A LR +V NK +
Sbjct: 25 YIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRR 84
Query: 191 GDTVRTIVKFLSHELSRE-REEAVSLLYELSKSEALCEKI 229
+ +R V L + E +++ LL+ LS ++ L E++
Sbjct: 85 QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL 124
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 679 CLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVL 738
+++ A+ L+ LL NE++++ +L ALS + G + +Q V EA G +P L+ L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVK---EA-GAEPALEQL 188
Query: 739 LEKRTENLQRRAVWVVERI 757
E +Q+ A +E+I
Sbjct: 189 QSSPNEKIQKEAQEALEKI 207
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 679 CLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVL 738
+++ A+ L+ LL NE++++ +L ALS + G + Q V+ G P L L
Sbjct: 49 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA----GALPALVQL 104
Query: 739 LEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 798
L E + + A+W + I + + D ALV + + Q A AL +
Sbjct: 105 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164
Query: 799 I 799
I
Sbjct: 165 I 165
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 78/174 (44%), Gaps = 8/174 (4%)
Query: 122 ESDIMPALKYVQYFCQSSRSNKHVVHNSELIPMIIDMLKSSSRKVRCTALETLRIVVEED 181
+ ++ AL+ + V ++ +P ++ +L S + ++ AL L +
Sbjct: 26 QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 85
Query: 182 DDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSK-SEALCEKIGSI--NGAILI 238
++ + + + +V+ LS + +EA L+ LS + E+I ++ GA+
Sbjct: 86 NEQIQAVIDAGALPALVQLLSSPNEQILQEA---LWALSNIASGGNEQIQAVIDAGALPA 142
Query: 239 LVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQE 292
LV + SS +E +L ++A L+N+ N +Q + +P L Q+ P E
Sbjct: 143 LVQLLSSPNEQIL--QEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPNE 194
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 14/181 (7%)
Query: 191 GDTVRTIVKFLSHELSREREEAVSLLYELSK-SEALCEKIGSI--NGAILILVGMTSSKS 247
G + +V+ L+ S +++E S L +LS+ + E+I ++ GA+ LV + SS +
Sbjct: 11 GSELPQMVQQLN---SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPN 67
Query: 248 ENLLTVEKAEKTLANLEKCEN-NVRQMAENGRLQPLLTQILEGPQETKLSLAAF-LGDLA 305
E +L ++A L+N+ N ++ + + G L P L Q+L P E L A + L ++A
Sbjct: 68 EQIL--QEALWALSNIASGGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIA 124
Query: 306 LNSDVKVLVARTVGS--CLINIMKSGNMQAREAALKALNQISSCEPSAKVLI-HAGILPP 362
+ ++ G+ L+ ++ S N Q + AL AL+ I+S K + AG P
Sbjct: 125 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPA 184
Query: 363 L 363
L
Sbjct: 185 L 185
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 37/73 (50%)
Query: 26 IEPIYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRST 85
+E I + CP+ +++++PV+ + +F R I ++ R K CP+ +
Sbjct: 13 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72
Query: 86 DLNPSIALRNTIE 98
+L P++ + N +E
Sbjct: 73 NLKPNLHVANIVE 85
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 99/205 (48%), Gaps = 15/205 (7%)
Query: 194 VRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGM-TSSKSENLLT 252
V +VK L+ S ++EA L E++ A K G + +LV + TS+ SE
Sbjct: 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSE---- 59
Query: 253 VEK-AEKTLANLEKC-ENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSD- 309
V+K A + LAN+ + ++ + + G ++ L+ + E + A L ++A D
Sbjct: 60 VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 119
Query: 310 -VKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSA-KVLIHAGILPPLVKDL 367
+K +V L+ ++ S + + ++ A +AL I+S A K ++ AG + LVK L
Sbjct: 120 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL 179
Query: 368 FTVGSNHLPMRLKEVSATILANVVN 392
+ S +++ +A LAN+ +
Sbjct: 180 TSTDS-----EVQKEAARALANIAS 199
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 679 CLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVL 738
+++ A+ L+ LL NE++++ +L ALS + G + Q V+ G P L L
Sbjct: 49 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA----GALPALVQL 104
Query: 739 LEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 798
L E + + A+W + I + + D ALV + + Q A AL +
Sbjct: 105 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164
Query: 799 I 799
I
Sbjct: 165 I 165
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 85/163 (52%), Gaps = 13/163 (7%)
Query: 191 GDTVRTIVKFLSHELSREREEAVSLLYELSK-SEALCEKIGSI--NGAILILVGMTSSKS 247
G + +V+ L+ S +++E S L +LS+ + E+I ++ GA+ LV + SS +
Sbjct: 11 GSELPQMVQQLN---SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPN 67
Query: 248 ENLLTVEKAEKTLANLEKCEN-NVRQMAENGRLQPLLTQILEGPQETKLSLAAF-LGDLA 305
E +L ++A L+N+ N ++ + + G L P L Q+L P E L A + L ++A
Sbjct: 68 EQIL--QEALWALSNIASGGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIA 124
Query: 306 LNSDVKVLVARTVGS--CLINIMKSGNMQAREAALKALNQISS 346
+ ++ G+ L+ ++ S N Q + AL AL+ I+S
Sbjct: 125 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 679 CLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVL 738
+++ A+ L+ LL NE++++ +L ALS + G + Q V+ G P L L
Sbjct: 49 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA----GALPALVQL 104
Query: 739 LEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 798
L E + + A+W + I + + D ALV + + Q A AL +
Sbjct: 105 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164
Query: 799 I 799
I
Sbjct: 165 I 165
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 234 GAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQET 293
GA+ LV + SS +E +L ++A L+N+ N Q + P L Q+L P E
Sbjct: 54 GALPALVQLLSSPNEQIL--QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 111
Query: 294 KLSLAAF-LGDLALNSDVKVLVARTVGS--CLINIMKSGNMQAREAALKALNQISS 346
L A + L ++A + ++ G+ L+ ++ S N Q + AL AL+ I+S
Sbjct: 112 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167
>pdb|2KRE|A Chain A, Solution Structure Of E4bUFD2A U-Box Domain
pdb|3L1X|A Chain A, Crystal Structure Of U-Box Domain Of Human E4b Ubiquitin
Ligase
pdb|3L1Z|B Chain B, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 100
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 31 DAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNPS 90
D F PL +M DPV L +G +R I R P P ++ L + L P
Sbjct: 28 DEFRDPLMDTLMTDPVRLPSGTIMDRSII------LRHLLNSPTDPFNRQTLTESMLEPV 81
Query: 91 IALRNTIEEW 100
L+ I+ W
Sbjct: 82 PELKEQIQAW 91
>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-Cadherin
pdb|3L6Y|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|C Chain C, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|E Chain E, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
Length = 584
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 128 ALKYVQYFCQSSRSNKHVVHNSELIPMIIDMLKSSSRKVRCTALETLR-IVVEEDDDNKE 186
A Y+Q+ C + K V + IP+++ +L ++V A L+ I D DNK
Sbjct: 68 AAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127
Query: 187 ILGQGDTVRTIVKFLSHELSREREEAVS-LLYELSKSEAL 225
+ D V +V+ L + E ++ L+ LS +++
Sbjct: 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSI 167
>pdb|2KR4|A Chain A, U-Box Domain Of The E3 Ubiquitin Ligase E4b
Length = 85
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 31 DAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNPS 90
D F PL +M DPV L +G +R I R P P ++ L + L P
Sbjct: 13 DEFRDPLMDTLMTDPVRLPSGTVMDRSII------LRHLLNSPTDPFNRQMLTESMLEPV 66
Query: 91 IALRNTIEEW 100
L+ I+ W
Sbjct: 67 PELKEQIQAW 76
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 123/293 (41%), Gaps = 25/293 (8%)
Query: 138 SSRSNKHVVHNSELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKE-ILGQGDTVRT 196
+ N VV + +P+ + +L SSS VR A+ L V + ++ +L G +
Sbjct: 110 GTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPL 169
Query: 197 IVKFLSH-ELSREREEAVSLL-YELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVE 254
+ + H +LS R +L + K + E+ A+ L + S E +LT
Sbjct: 170 LAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQ---TRPALPALARLIHSNDEEVLT-- 224
Query: 255 KAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLA-AFLGDLALNSDVKV- 312
A L+ L N+ Q + P L ++L P + L A +G++ D +
Sbjct: 225 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ 284
Query: 313 -LVARTVGSCLINIMKSGNMQA--REAALKALNQISSCEPSAKVLIHAGILPPLVKDLFT 369
++ CL++++ ++ +EA N + + + +I+AGI+ PLV L T
Sbjct: 285 CIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQT 344
Query: 370 VGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLI 422
+K+ +A ++N SG D I + LVSE + L L+
Sbjct: 345 A-----EFDIKKEAAWAISNAT-SGGSHDQI------KYLVSEGCIKPLCDLL 385
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 35 CPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVC 75
C + + +++PV +E G F + I +W+++ + PVC
Sbjct: 18 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|2D0T|A Chain A, Crystal Structure Of 4-Phenylimidazole Bound Form Of Human
Indoleamine 2,3-Dioxygenase
pdb|2D0T|B Chain B, Crystal Structure Of 4-Phenylimidazole Bound Form Of Human
Indoleamine 2,3-Dioxygenase
pdb|2D0U|A Chain A, Crystal Structure Of Cyanide Bound Form Of Human
Indoleamine 2,3-Dioxygenase
pdb|2D0U|B Chain B, Crystal Structure Of Cyanide Bound Form Of Human
Indoleamine 2,3-Dioxygenase
Length = 406
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 12/101 (11%)
Query: 256 AEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVA 315
A+ LAN +K + N EN +L +G L + L ++A S +KV+
Sbjct: 130 ADCVLANWKKKDPNKPLTYEN---MDVLFSFRDGDCSKGFFLVSLLVEIAAASAIKVIP- 185
Query: 316 RTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIH 356
+ K+ MQ R+ LKAL +I+SC A + H
Sbjct: 186 --------TVFKAMQMQERDTLLKALLEIASCLEKALQVFH 218
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 122/289 (42%), Gaps = 25/289 (8%)
Query: 142 NKHVVHNSELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKE-ILGQGDTVRTIVKF 200
N VV + +P+ + +L SSS VR A+ L V + ++ +L G + + +
Sbjct: 152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQL 211
Query: 201 LSH-ELSREREEAVSLL-YELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEK 258
H +LS R +L + K + E+ A+ L + S E +LT A
Sbjct: 212 NEHTKLSMLRNATWTLSNFCRGKPQPSFEQ---TRPALPALARLIHSNDEEVLT--DACW 266
Query: 259 TLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLA-AFLGDLALNSDVKV--LVA 315
L+ L N+ Q + P L ++L P + L A +G++ D + ++
Sbjct: 267 ALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIID 326
Query: 316 RTVGSCLINIMKSGNMQA--REAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSN 373
CL++++ ++ +EA N + + + +I+AGI+ PLV L T
Sbjct: 327 HQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA--- 383
Query: 374 HLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLI 422
+K+ +A ++N SG D I + LVSE + L L+
Sbjct: 384 --EFDIKKEAAWAISNAT-SGGSHDQI------KYLVSEGCIKPLCDLL 423
>pdb|1TXG|A Chain A, Structure Of Glycerol-3-Phosphate Dehydrogenase From
Archaeoglobus Fulgidus
pdb|1TXG|B Chain B, Structure Of Glycerol-3-Phosphate Dehydrogenase From
Archaeoglobus Fulgidus
Length = 335
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 739 LEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAE 793
+++ E L+RR V VVE +T + AY +S N T L+D+ Y ++ E
Sbjct: 273 IDEAMEELERRGVGVVEG-YKTAEKAYRLSSKINADTKLLDSIYRVLYEGLKVEE 326
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 517 ISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSI 558
+S +A + L +EL +RD G T +LDE GL F V+ +
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKL 847
>pdb|3KX6|A Chain A, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase
From Babesia Bovis At 2.1a Resolution
pdb|3KX6|B Chain B, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase
From Babesia Bovis At 2.1a Resolution
pdb|3KX6|C Chain C, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase
From Babesia Bovis At 2.1a Resolution
pdb|3KX6|D Chain D, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase
From Babesia Bovis At 2.1a Resolution
Length = 379
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 18/153 (11%)
Query: 201 LSHELSREREEAVSLL---YELSKSEALCEKIGSINGAILILVGMTSSKSENLLTV--EK 255
LS ++ + + +S+L + L++ A+C++ NG + I+ + ++ + V E
Sbjct: 169 LSIDVKKNKPSNLSILETAHTLARYAAICQE----NGLVPIVEPEILADGDHSIEVCAEV 224
Query: 256 AEKTLANLEKCENNVRQMAENGRLQP-LLTQILEGPQETKLSLAAFLGDLALNSDVKVLV 314
E+ LA + K N+ + + E L+P ++TQ ++ + FL AL
Sbjct: 225 TERVLAAVFKALNDHKVLLEGALLKPNMVTQGVDCKDKPAPQTVGFLTSRALR------- 277
Query: 315 ARTVGSCLINIMKSGNMQAREAALKALNQISSC 347
RTV L +M Q+ A + LN+I+ C
Sbjct: 278 -RTVPPALPGVMFLSGGQSESMATRHLNEINKC 309
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,233,957
Number of Sequences: 62578
Number of extensions: 767154
Number of successful extensions: 2373
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2251
Number of HSP's gapped (non-prelim): 109
length of query: 813
length of database: 14,973,337
effective HSP length: 107
effective length of query: 706
effective length of database: 8,277,491
effective search space: 5843908646
effective search space used: 5843908646
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)