Query 003530
Match_columns 813
No_of_seqs 418 out of 3230
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 01:11:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003530.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003530hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 4.4E-56 9.6E-61 536.2 60.6 625 113-802 19-765 (2102)
2 PLN03200 cellulose synthase-in 100.0 1.2E-52 2.6E-57 506.5 58.9 623 111-811 62-820 (2102)
3 KOG0166 Karyopherin (importin) 100.0 9.6E-35 2.1E-39 309.0 35.8 410 279-762 68-489 (514)
4 KOG4224 Armadillo repeat prote 100.0 1.3E-35 2.8E-40 292.9 24.1 483 187-764 42-527 (550)
5 KOG4224 Armadillo repeat prote 100.0 1.2E-34 2.6E-39 286.1 27.2 364 151-540 86-453 (550)
6 COG5064 SRP1 Karyopherin (impo 100.0 6.5E-34 1.4E-38 278.5 29.4 417 235-765 72-502 (526)
7 KOG0166 Karyopherin (importin) 100.0 4.1E-29 8.8E-34 266.1 37.2 415 236-715 68-488 (514)
8 COG5064 SRP1 Karyopherin (impo 100.0 3.8E-27 8.3E-32 231.2 30.0 385 152-557 73-478 (526)
9 PF05804 KAP: Kinesin-associat 100.0 7.5E-25 1.6E-29 247.2 42.8 505 124-718 138-654 (708)
10 PF05804 KAP: Kinesin-associat 99.9 9.5E-23 2.1E-27 230.2 43.9 516 192-800 123-648 (708)
11 KOG1048 Neural adherens juncti 99.9 1.4E-21 3.1E-26 214.7 30.1 359 193-557 234-665 (717)
12 KOG1048 Neural adherens juncti 99.9 1.5E-20 3.2E-25 206.8 24.9 414 277-770 233-695 (717)
13 PF04564 U-box: U-box domain; 99.8 1.6E-20 3.6E-25 151.0 4.5 72 29-105 1-72 (73)
14 KOG4199 Uncharacterized conser 99.8 2.3E-16 5.1E-21 155.8 29.6 339 127-486 81-443 (461)
15 KOG4199 Uncharacterized conser 99.8 2.8E-16 6.1E-21 155.2 26.9 305 122-444 121-446 (461)
16 KOG2122 Beta-catenin-binding p 99.7 4.1E-16 8.9E-21 177.8 22.5 351 127-488 213-602 (2195)
17 KOG2122 Beta-catenin-binding p 99.7 1.4E-15 3E-20 173.6 26.4 367 238-633 201-603 (2195)
18 PF10508 Proteasom_PSMB: Prote 99.7 2E-13 4.3E-18 153.9 36.1 380 153-552 41-439 (503)
19 KOG4500 Rho/Rac GTPase guanine 99.7 8.3E-14 1.8E-18 142.1 28.0 400 116-531 95-517 (604)
20 smart00504 Ubox Modified RING 99.6 1.8E-16 4E-21 125.0 5.2 63 32-100 1-63 (63)
21 KOG1222 Kinesin associated pro 99.6 2.3E-13 5E-18 140.4 27.2 389 250-718 277-668 (791)
22 PF04826 Arm_2: Armadillo-like 99.6 1.1E-13 2.3E-18 139.7 21.5 197 188-394 8-207 (254)
23 KOG4500 Rho/Rac GTPase guanine 99.6 1.1E-12 2.4E-17 134.0 27.4 436 147-613 84-554 (604)
24 PF10508 Proteasom_PSMB: Prote 99.6 3.1E-12 6.7E-17 144.3 34.3 393 124-533 54-465 (503)
25 KOG1222 Kinesin associated pro 99.5 5E-11 1.1E-15 123.4 32.9 385 208-635 279-667 (791)
26 KOG1293 Proteins containing ar 99.5 7.6E-12 1.6E-16 135.1 27.9 479 122-635 23-537 (678)
27 KOG1293 Proteins containing ar 99.5 1E-11 2.2E-16 134.1 27.4 491 247-806 20-538 (678)
28 PF04826 Arm_2: Armadillo-like 99.5 1.2E-12 2.6E-17 132.1 19.1 194 232-443 10-206 (254)
29 PRK09687 putative lyase; Provi 99.5 2.2E-12 4.7E-17 133.5 21.4 255 413-798 23-279 (280)
30 PRK13800 putative oxidoreducta 99.5 6.8E-12 1.5E-16 151.6 27.6 277 357-798 620-896 (897)
31 PF01602 Adaptin_N: Adaptin N 99.5 2E-10 4.4E-15 132.7 37.7 497 123-757 21-522 (526)
32 PRK09687 putative lyase; Provi 99.5 1.2E-11 2.7E-16 127.9 24.0 254 151-483 24-278 (280)
33 KOG2171 Karyopherin (importin) 99.4 1.3E-09 2.7E-14 125.6 40.5 548 152-802 6-595 (1075)
34 PRK13800 putative oxidoreducta 99.4 3.9E-11 8.5E-16 145.1 29.5 277 148-529 619-895 (897)
35 KOG2171 Karyopherin (importin) 99.4 1.1E-09 2.4E-14 126.1 38.6 452 125-633 21-506 (1075)
36 PF01602 Adaptin_N: Adaptin N 99.4 5.8E-10 1.2E-14 128.9 36.5 473 196-801 8-483 (526)
37 PTZ00429 beta-adaptin; Provisi 99.3 1.7E-07 3.8E-12 108.6 45.6 367 191-632 31-398 (746)
38 PTZ00429 beta-adaptin; Provisi 99.2 2.1E-06 4.5E-11 99.9 49.2 508 149-802 31-547 (746)
39 PF15227 zf-C3HC4_4: zinc fing 99.2 9.2E-12 2E-16 87.5 2.7 42 35-78 1-42 (42)
40 KOG2023 Nuclear transport rece 99.2 4.3E-08 9.3E-13 106.0 31.1 352 150-531 128-547 (885)
41 cd00020 ARM Armadillo/beta-cat 99.1 5.9E-10 1.3E-14 100.8 12.6 117 146-264 3-119 (120)
42 KOG0168 Putative ubiquitin fus 99.1 6E-08 1.3E-12 107.7 28.1 395 112-515 172-656 (1051)
43 cd00020 ARM Armadillo/beta-cat 99.1 1.7E-09 3.8E-14 97.7 13.0 116 187-305 2-119 (120)
44 PLN03208 E3 ubiquitin-protein 99.1 1.4E-10 3.1E-15 108.5 5.6 66 27-92 13-88 (193)
45 KOG0946 ER-Golgi vesicle-tethe 99.0 1.4E-06 3.1E-11 96.4 35.8 351 93-472 20-421 (970)
46 cd00256 VATPase_H VATPase_H, r 99.0 1.4E-07 3E-12 101.7 27.6 330 150-486 53-424 (429)
47 PF11789 zf-Nse: Zinc-finger o 99.0 1.8E-10 4E-15 86.4 1.9 48 29-80 8-56 (57)
48 TIGR00599 rad18 DNA repair pro 99.0 6E-10 1.3E-14 117.9 6.0 70 29-104 23-92 (397)
49 PF03224 V-ATPase_H_N: V-ATPas 98.9 6.2E-08 1.3E-12 103.1 18.0 228 151-382 56-304 (312)
50 KOG0168 Putative ubiquitin fus 98.9 1.5E-06 3.3E-11 96.8 28.1 224 315-558 209-438 (1051)
51 cd00256 VATPase_H VATPase_H, r 98.9 4E-07 8.6E-12 98.2 23.3 302 127-441 73-424 (429)
52 KOG1062 Vesicle coat complex A 98.9 5.8E-06 1.3E-10 92.2 32.3 193 159-397 116-328 (866)
53 KOG2023 Nuclear transport rece 98.8 3.3E-06 7.1E-11 91.9 27.1 316 191-533 127-505 (885)
54 KOG1241 Karyopherin (importin) 98.8 5.7E-05 1.2E-09 84.0 35.6 552 155-785 95-693 (859)
55 PF03224 V-ATPase_H_N: V-ATPas 98.7 3.6E-07 7.8E-12 97.3 17.8 197 193-395 56-272 (312)
56 PF13923 zf-C3HC4_2: Zinc fing 98.7 6.2E-09 1.3E-13 72.5 2.9 38 35-78 1-39 (39)
57 PF13445 zf-RING_UBOX: RING-ty 98.7 6.4E-09 1.4E-13 72.9 2.5 39 35-76 1-43 (43)
58 KOG0946 ER-Golgi vesicle-tethe 98.7 8.3E-06 1.8E-10 90.5 27.4 336 192-541 22-407 (970)
59 PF05536 Neurochondrin: Neuroc 98.7 4.4E-05 9.5E-10 86.6 32.9 416 151-586 6-494 (543)
60 KOG1824 TATA-binding protein-i 98.7 0.0001 2.2E-09 83.6 34.6 514 124-760 494-1037(1233)
61 KOG0213 Splicing factor 3b, su 98.6 0.00055 1.2E-08 75.9 37.7 515 190-801 505-1065(1172)
62 KOG1060 Vesicle coat complex A 98.6 6.3E-05 1.4E-09 83.8 30.4 432 195-760 38-497 (968)
63 KOG1241 Karyopherin (importin) 98.6 3.4E-05 7.3E-10 85.7 28.2 494 194-805 4-534 (859)
64 KOG2160 Armadillo/beta-catenin 98.6 2.1E-06 4.6E-11 88.2 17.9 187 246-443 93-283 (342)
65 KOG1789 Endocytosis protein RM 98.6 0.00024 5.1E-09 81.1 34.5 595 148-801 1373-2116(2235)
66 KOG0287 Postreplication repair 98.6 2.9E-08 6.3E-13 98.3 2.8 69 31-105 22-90 (442)
67 KOG2759 Vacuolar H+-ATPase V1 98.6 9.9E-06 2.1E-10 84.3 21.2 362 359-759 66-438 (442)
68 KOG2759 Vacuolar H+-ATPase V1 98.6 4.7E-05 1E-09 79.5 26.1 327 150-486 65-437 (442)
69 PF00097 zf-C3HC4: Zinc finger 98.5 6.9E-08 1.5E-12 68.3 3.7 40 35-78 1-41 (41)
70 KOG4642 Chaperone-dependent E3 98.5 6.3E-08 1.4E-12 92.7 3.9 77 24-105 203-279 (284)
71 TIGR02270 conserved hypothetic 98.5 1.8E-05 3.9E-10 86.1 23.3 118 460-629 88-205 (410)
72 KOG2160 Armadillo/beta-catenin 98.5 1.7E-05 3.7E-10 81.6 21.0 184 160-346 93-282 (342)
73 PF13920 zf-C3HC4_3: Zinc fing 98.5 1.2E-07 2.6E-12 70.2 3.0 47 31-83 1-48 (50)
74 TIGR02270 conserved hypothetic 98.5 5.1E-05 1.1E-09 82.6 24.5 241 150-486 54-295 (410)
75 KOG0823 Predicted E3 ubiquitin 98.4 2E-07 4.3E-12 89.0 4.9 58 30-90 45-102 (230)
76 KOG1824 TATA-binding protein-i 98.4 0.0015 3.3E-08 74.5 35.6 405 151-636 612-1041(1233)
77 KOG3678 SARM protein (with ste 98.4 1.6E-05 3.4E-10 83.1 18.5 271 187-488 175-453 (832)
78 KOG2973 Uncharacterized conser 98.4 0.00011 2.5E-09 73.5 22.5 288 154-486 7-314 (353)
79 PF05536 Neurochondrin: Neuroc 98.4 0.00038 8.3E-09 79.1 30.1 242 235-490 6-264 (543)
80 PHA02929 N1R/p28-like protein; 98.4 2.5E-07 5.4E-12 91.3 3.8 48 30-83 172-227 (238)
81 PF13639 zf-RING_2: Ring finge 98.4 2.2E-07 4.9E-12 66.7 2.3 40 34-79 2-44 (44)
82 KOG0213 Splicing factor 3b, su 98.3 0.0017 3.8E-08 72.1 31.6 262 320-632 802-1066(1172)
83 PF14835 zf-RING_6: zf-RING of 98.3 1.7E-07 3.7E-12 70.0 0.8 58 32-97 7-65 (65)
84 COG5432 RAD18 RING-finger-cont 98.3 3.6E-07 7.8E-12 88.7 2.8 67 32-104 25-91 (391)
85 PF14664 RICTOR_N: Rapamycin-i 98.3 0.00062 1.4E-08 73.4 27.3 328 131-485 6-362 (371)
86 KOG0317 Predicted E3 ubiquitin 98.3 5.7E-07 1.2E-11 88.5 3.6 54 28-87 235-288 (293)
87 KOG1059 Vesicle coat complex A 98.3 0.0011 2.5E-08 73.5 28.9 254 151-445 145-404 (877)
88 COG5240 SEC21 Vesicle coat com 98.2 0.0029 6.2E-08 68.4 30.5 348 247-712 201-554 (898)
89 KOG3678 SARM protein (with ste 98.2 8.4E-05 1.8E-09 77.8 18.2 279 312-635 174-456 (832)
90 KOG4413 26S proteasome regulat 98.2 0.00057 1.2E-08 68.8 23.2 293 146-445 124-442 (524)
91 PHA02926 zinc finger-like prot 98.2 1.3E-06 2.8E-11 82.6 4.0 57 27-83 165-230 (242)
92 KOG1062 Vesicle coat complex A 98.2 0.0011 2.4E-08 74.6 27.1 281 114-486 114-413 (866)
93 KOG1789 Endocytosis protein RM 98.2 0.00025 5.4E-09 81.0 22.1 388 164-613 1739-2142(2235)
94 COG5215 KAP95 Karyopherin (imp 98.2 0.0027 5.9E-08 68.6 28.8 484 203-803 16-531 (858)
95 KOG0320 Predicted E3 ubiquitin 98.2 1.3E-06 2.8E-11 79.6 3.4 51 32-88 131-183 (187)
96 COG1413 FOG: HEAT repeat [Ener 98.2 0.0011 2.3E-08 71.9 26.8 280 358-799 43-333 (335)
97 KOG1242 Protein containing ada 98.2 0.0017 3.7E-08 71.5 27.7 344 278-714 97-445 (569)
98 KOG1060 Vesicle coat complex A 98.1 0.0055 1.2E-07 68.9 31.4 398 152-634 37-461 (968)
99 KOG0212 Uncharacterized conser 98.1 0.00011 2.4E-09 79.0 17.0 333 190-557 82-423 (675)
100 cd00162 RING RING-finger (Real 98.1 3.4E-06 7.4E-11 61.0 3.9 43 34-81 1-44 (45)
101 KOG4646 Uncharacterized conser 98.1 5.2E-05 1.1E-09 66.3 11.5 131 234-369 16-148 (173)
102 KOG2042 Ubiquitin fusion degra 98.1 3.4E-06 7.3E-11 97.3 5.4 75 25-105 863-938 (943)
103 KOG1059 Vesicle coat complex A 98.1 0.0018 3.9E-08 71.9 25.4 211 238-486 148-364 (877)
104 KOG4413 26S proteasome regulat 98.1 0.0056 1.2E-07 61.9 26.6 277 235-533 83-377 (524)
105 COG1413 FOG: HEAT repeat [Ener 98.0 0.0022 4.7E-08 69.4 26.1 249 150-486 43-303 (335)
106 KOG4646 Uncharacterized conser 98.0 5.8E-05 1.2E-09 66.0 10.3 113 277-394 16-130 (173)
107 KOG2177 Predicted E3 ubiquitin 98.0 3.2E-06 7E-11 92.0 3.4 67 30-104 11-77 (386)
108 KOG1242 Protein containing ada 98.0 0.0015 3.3E-08 72.0 23.4 358 151-557 97-464 (569)
109 KOG0212 Uncharacterized conser 98.0 0.00051 1.1E-08 74.1 19.2 274 146-443 163-445 (675)
110 smart00184 RING Ring finger. E 98.0 8E-06 1.7E-10 56.8 3.9 39 35-78 1-39 (39)
111 COG5181 HSH155 U2 snRNP splice 98.0 0.007 1.5E-07 66.1 27.3 266 413-802 604-871 (975)
112 KOG2973 Uncharacterized conser 97.9 0.0024 5.1E-08 64.3 21.3 265 236-524 5-306 (353)
113 KOG0211 Protein phosphatase 2A 97.9 0.0087 1.9E-07 69.6 29.2 542 151-802 122-665 (759)
114 PF13646 HEAT_2: HEAT repeats; 97.9 6.4E-05 1.4E-09 63.4 8.6 87 603-755 1-88 (88)
115 PF10165 Ric8: Guanine nucleot 97.9 0.0018 3.9E-08 72.1 22.2 282 212-497 1-347 (446)
116 PF00514 Arm: Armadillo/beta-c 97.8 2.8E-05 6E-10 54.9 4.7 41 590-631 1-41 (41)
117 KOG1058 Vesicle coat complex C 97.8 0.0041 8.8E-08 69.5 22.7 368 159-607 108-486 (948)
118 PF14664 RICTOR_N: Rapamycin-i 97.8 0.0033 7.2E-08 67.9 21.7 257 174-442 7-269 (371)
119 PF00514 Arm: Armadillo/beta-c 97.8 2.9E-05 6.3E-10 54.8 4.0 40 182-221 2-41 (41)
120 PF13646 HEAT_2: HEAT repeats; 97.8 3.9E-05 8.4E-10 64.8 5.4 86 686-797 1-88 (88)
121 PF14634 zf-RING_5: zinc-RING 97.7 2.1E-05 4.6E-10 56.3 2.7 40 35-80 2-44 (44)
122 COG5113 UFD2 Ubiquitin fusion 97.7 3.6E-05 7.9E-10 83.1 5.5 74 25-104 847-921 (929)
123 KOG2164 Predicted E3 ubiquitin 97.7 2.3E-05 4.9E-10 83.7 3.8 59 31-90 185-243 (513)
124 TIGR00570 cdk7 CDK-activating 97.7 4.6E-05 9.9E-10 77.6 5.2 52 31-87 2-58 (309)
125 KOG2259 Uncharacterized conser 97.7 0.0043 9.3E-08 68.4 19.9 255 192-486 198-474 (823)
126 KOG2660 Locus-specific chromos 97.7 2.2E-05 4.9E-10 79.1 2.5 66 29-100 12-82 (331)
127 COG5215 KAP95 Karyopherin (imp 97.7 0.14 3.1E-06 55.9 38.4 545 155-794 99-704 (858)
128 KOG2734 Uncharacterized conser 97.6 0.017 3.7E-07 61.0 22.6 268 124-394 100-402 (536)
129 COG5574 PEX10 RING-finger-cont 97.6 3.7E-05 7.9E-10 75.0 2.9 52 26-82 209-261 (271)
130 COG5181 HSH155 U2 snRNP splice 97.6 0.004 8.7E-08 67.9 18.0 261 193-488 605-871 (975)
131 KOG0211 Protein phosphatase 2A 97.6 0.06 1.3E-06 62.8 28.9 491 163-758 172-663 (759)
132 COG5222 Uncharacterized conser 97.6 0.0001 2.2E-09 72.3 5.4 72 27-103 269-342 (427)
133 KOG1078 Vesicle coat complex C 97.5 0.085 1.8E-06 59.9 27.8 279 320-712 248-531 (865)
134 KOG2259 Uncharacterized conser 97.5 0.015 3.3E-07 64.3 21.5 293 210-538 176-480 (823)
135 PF12678 zf-rbx1: RING-H2 zinc 97.5 0.0001 2.2E-09 59.2 3.6 40 34-79 21-73 (73)
136 KOG0289 mRNA splicing factor [ 97.5 0.00025 5.5E-09 73.7 7.1 51 33-89 1-52 (506)
137 KOG1943 Beta-tubulin folding c 97.5 0.11 2.3E-06 61.2 28.5 255 150-440 341-609 (1133)
138 KOG1061 Vesicle coat complex A 97.4 0.11 2.4E-06 59.1 27.8 279 192-515 13-293 (734)
139 COG5240 SEC21 Vesicle coat com 97.4 0.29 6.2E-06 53.7 36.6 248 236-533 67-332 (898)
140 COG5369 Uncharacterized conser 97.4 0.002 4.3E-08 69.2 13.0 194 172-368 411-618 (743)
141 KOG2734 Uncharacterized conser 97.4 0.049 1.1E-06 57.7 22.6 221 170-398 104-352 (536)
142 KOG0311 Predicted E3 ubiquitin 97.4 3.8E-05 8.3E-10 77.7 0.2 69 28-101 39-109 (381)
143 KOG1061 Vesicle coat complex A 97.4 0.015 3.3E-07 65.8 20.1 336 149-533 85-453 (734)
144 KOG0297 TNF receptor-associate 97.4 0.00013 2.9E-09 79.2 3.7 71 26-102 15-87 (391)
145 KOG4159 Predicted E3 ubiquitin 97.3 0.00013 2.8E-09 77.9 3.4 72 26-103 78-154 (398)
146 PF10165 Ric8: Guanine nucleot 97.3 0.012 2.7E-07 65.5 19.0 272 142-444 14-339 (446)
147 KOG0567 HEAT repeat-containing 97.3 0.013 2.9E-07 57.9 16.6 255 152-486 5-279 (289)
148 KOG1077 Vesicle coat complex A 97.3 0.047 1E-06 61.0 21.8 300 414-794 112-426 (938)
149 KOG1077 Vesicle coat complex A 97.2 0.19 4E-06 56.4 25.3 285 196-523 115-423 (938)
150 PF12348 CLASP_N: CLASP N term 97.2 0.015 3.3E-07 59.0 16.1 181 160-347 17-207 (228)
151 KOG1517 Guanine nucleotide bin 97.1 0.012 2.6E-07 68.2 15.6 229 475-758 487-731 (1387)
152 KOG0978 E3 ubiquitin ligase in 97.1 0.00026 5.5E-09 79.9 2.4 54 31-89 642-695 (698)
153 PRK14707 hypothetical protein; 97.0 1.8 3.9E-05 54.9 40.4 595 122-806 178-787 (2710)
154 COG5152 Uncharacterized conser 97.0 0.00038 8.2E-09 64.3 2.3 44 33-82 197-240 (259)
155 KOG2979 Protein involved in DN 97.0 0.00044 9.5E-09 67.5 2.7 49 29-81 173-222 (262)
156 KOG1078 Vesicle coat complex C 97.0 1.1 2.3E-05 51.4 35.6 285 415-800 247-531 (865)
157 KOG1813 Predicted E3 ubiquitin 96.9 0.00043 9.4E-09 68.6 2.0 44 33-82 242-285 (313)
158 COG5369 Uncharacterized conser 96.9 0.0032 6.9E-08 67.7 8.5 188 124-314 405-602 (743)
159 smart00185 ARM Armadillo/beta- 96.9 0.0017 3.7E-08 45.5 4.5 39 183-221 3-41 (41)
160 KOG1517 Guanine nucleotide bin 96.9 0.042 9.1E-07 64.0 17.4 200 147-348 509-734 (1387)
161 smart00185 ARM Armadillo/beta- 96.9 0.0024 5.2E-08 44.8 5.0 39 267-305 2-40 (41)
162 KOG1002 Nucleotide excision re 96.8 0.00084 1.8E-08 71.2 3.3 53 30-83 534-586 (791)
163 KOG0567 HEAT repeat-containing 96.7 0.36 7.9E-06 48.1 20.4 253 194-529 5-276 (289)
164 PF12861 zf-Apc11: Anaphase-pr 96.7 0.0017 3.7E-08 52.5 3.6 48 32-82 32-81 (85)
165 KOG1240 Protein kinase contain 96.7 0.14 3E-06 60.8 19.9 300 361-760 425-726 (1431)
166 COG5231 VMA13 Vacuolar H+-ATPa 96.6 0.053 1.1E-06 55.0 14.0 257 158-441 157-427 (432)
167 COG5231 VMA13 Vacuolar H+-ATPa 96.6 0.14 3.1E-06 52.0 16.8 235 247-486 160-427 (432)
168 PF12348 CLASP_N: CLASP N term 96.6 0.059 1.3E-06 54.6 14.8 180 247-443 18-207 (228)
169 KOG0802 E3 ubiquitin ligase [P 96.6 0.0011 2.4E-08 76.0 2.2 45 31-81 290-339 (543)
170 PF12460 MMS19_C: RNAPII trans 96.5 1.6 3.5E-05 48.5 27.0 364 320-760 2-395 (415)
171 KOG2879 Predicted E3 ubiquitin 96.5 0.0019 4.2E-08 63.4 3.1 49 31-83 238-287 (298)
172 KOG4628 Predicted E3 ubiquitin 96.4 0.0022 4.8E-08 66.7 3.2 47 33-84 230-279 (348)
173 COG5540 RING-finger-containing 96.3 0.0026 5.6E-08 63.1 2.8 47 33-84 324-373 (374)
174 KOG3039 Uncharacterized conser 96.2 0.003 6.4E-08 60.8 2.8 35 31-65 42-76 (303)
175 KOG4535 HEAT and armadillo rep 96.2 0.84 1.8E-05 49.1 20.9 270 328-628 306-600 (728)
176 KOG3039 Uncharacterized conser 96.1 0.0039 8.5E-08 60.0 3.0 53 31-89 220-276 (303)
177 PF12460 MMS19_C: RNAPII trans 96.1 2.3 5E-05 47.3 25.2 345 279-716 1-397 (415)
178 PF04641 Rtf2: Rtf2 RING-finge 96.1 0.0047 1E-07 63.5 3.5 52 30-88 111-166 (260)
179 PF11841 DUF3361: Domain of un 96.0 0.29 6.3E-06 45.4 14.5 124 351-487 4-131 (160)
180 PF08569 Mo25: Mo25-like; Int 96.0 0.49 1.1E-05 50.3 18.3 198 146-348 72-285 (335)
181 KOG0804 Cytoplasmic Zn-finger 95.9 0.0023 4.9E-08 67.3 0.5 40 33-80 176-219 (493)
182 PF11841 DUF3361: Domain of un 95.9 0.17 3.8E-06 46.9 12.6 129 187-316 6-143 (160)
183 KOG3036 Protein involved in ce 95.9 0.41 8.9E-06 47.1 15.5 150 124-275 95-257 (293)
184 PF13513 HEAT_EZ: HEAT-like re 95.9 0.018 3.8E-07 43.5 5.2 55 472-531 1-55 (55)
185 KOG1240 Protein kinase contain 95.9 0.45 9.8E-06 56.8 18.6 283 162-487 435-725 (1431)
186 PF12717 Cnd1: non-SMC mitotic 95.9 0.74 1.6E-05 44.5 17.7 111 163-288 1-112 (178)
187 COG5243 HRD1 HRD ubiquitin lig 95.9 0.0063 1.4E-07 62.1 3.2 48 29-82 284-344 (491)
188 PF13513 HEAT_EZ: HEAT-like re 95.9 0.029 6.3E-07 42.3 6.2 54 291-344 1-55 (55)
189 KOG4367 Predicted Zn-finger pr 95.8 0.0035 7.5E-08 65.0 1.3 34 31-64 3-36 (699)
190 KOG0824 Predicted E3 ubiquitin 95.8 0.0065 1.4E-07 60.7 3.0 51 30-85 5-55 (324)
191 PF08569 Mo25: Mo25-like; Int 95.7 1.1 2.3E-05 47.8 19.5 227 271-513 70-308 (335)
192 PF09759 Atx10homo_assoc: Spin 95.7 0.019 4.1E-07 49.0 5.0 65 127-191 5-71 (102)
193 KOG3036 Protein involved in ce 95.7 1.1 2.4E-05 44.1 17.4 148 208-356 95-257 (293)
194 KOG1734 Predicted RING-contain 95.6 0.0054 1.2E-07 59.9 1.6 54 26-83 218-281 (328)
195 PF12755 Vac14_Fab1_bd: Vacuol 95.6 0.042 9E-07 46.9 6.7 71 683-759 26-96 (97)
196 KOG0915 Uncharacterized conser 95.5 0.72 1.6E-05 56.5 18.5 183 412-613 997-1184(1702)
197 PF13764 E3_UbLigase_R4: E3 ub 95.5 7.3 0.00016 46.4 26.7 218 318-559 118-363 (802)
198 PF05004 IFRD: Interferon-rela 95.4 1.6 3.5E-05 46.1 19.3 186 155-345 48-256 (309)
199 KOG4151 Myosin assembly protei 95.3 1.6 3.4E-05 50.4 19.8 243 347-627 493-737 (748)
200 KOG3113 Uncharacterized conser 95.3 0.013 2.9E-07 56.7 3.1 49 31-87 110-162 (293)
201 PF04078 Rcd1: Cell differenti 95.2 0.2 4.4E-06 50.2 11.2 149 125-275 67-228 (262)
202 PF05004 IFRD: Interferon-rela 95.2 1.2 2.6E-05 47.1 17.8 205 415-632 45-258 (309)
203 KOG0915 Uncharacterized conser 95.1 6.6 0.00014 48.7 24.8 105 151-258 999-1103(1702)
204 PF02985 HEAT: HEAT repeat; I 95.0 0.033 7.2E-07 36.2 3.5 28 686-713 2-29 (31)
205 COG5096 Vesicle coat complex, 95.0 0.45 9.8E-06 55.3 14.6 103 685-801 93-195 (757)
206 PF13764 E3_UbLigase_R4: E3 ub 95.0 3.5 7.6E-05 49.0 22.1 241 231-487 114-406 (802)
207 KOG0826 Predicted E3 ubiquitin 94.9 0.023 4.9E-07 57.6 3.5 48 29-82 297-345 (357)
208 PF02891 zf-MIZ: MIZ/SP-RING z 94.9 0.015 3.2E-07 42.6 1.7 48 32-81 2-50 (50)
209 PF09759 Atx10homo_assoc: Spin 94.9 0.11 2.4E-06 44.4 7.1 63 167-229 3-68 (102)
210 PF04063 DUF383: Domain of unk 94.8 0.21 4.5E-06 48.5 9.9 121 248-368 7-157 (192)
211 PF08045 CDC14: Cell division 94.8 0.13 2.9E-06 51.8 8.7 96 124-219 107-205 (257)
212 COG5096 Vesicle coat complex, 94.8 0.99 2.1E-05 52.6 16.6 161 123-306 34-195 (757)
213 KOG4151 Myosin assembly protei 94.8 0.2 4.4E-06 57.3 10.9 219 313-554 500-720 (748)
214 PF11698 V-ATPase_H_C: V-ATPas 94.7 0.065 1.4E-06 47.0 5.3 70 151-220 44-114 (119)
215 KOG0414 Chromosome condensatio 94.6 14 0.00031 44.7 28.7 122 568-751 935-1056(1251)
216 KOG1058 Vesicle coat complex C 94.6 11 0.00024 43.4 29.3 297 247-617 110-411 (948)
217 PF04078 Rcd1: Cell differenti 94.6 1.3 2.8E-05 44.6 14.8 193 163-356 8-228 (262)
218 KOG1788 Uncharacterized conser 94.6 13 0.00029 44.1 25.0 488 234-806 466-987 (2799)
219 PF12755 Vac14_Fab1_bd: Vacuol 94.5 0.17 3.6E-06 43.2 7.3 72 448-530 22-93 (97)
220 PRK14707 hypothetical protein; 94.4 22 0.00048 46.0 42.7 381 124-533 138-530 (2710)
221 PF11698 V-ATPase_H_C: V-ATPas 94.3 0.13 2.8E-06 45.2 6.2 73 683-759 42-115 (119)
222 KOG0828 Predicted E3 ubiquitin 94.2 0.033 7.2E-07 59.2 2.8 50 29-83 568-634 (636)
223 PF02985 HEAT: HEAT repeat; I 94.0 0.073 1.6E-06 34.6 3.3 29 602-631 1-29 (31)
224 PF08045 CDC14: Cell division 94.0 0.46 1E-05 48.0 10.5 100 164-263 105-205 (257)
225 KOG1991 Nuclear transport rece 94.0 17 0.00038 43.2 29.3 434 150-613 410-874 (1010)
226 KOG1943 Beta-tubulin folding c 94.0 19 0.0004 43.4 39.0 248 233-522 340-600 (1133)
227 KOG3665 ZYG-1-like serine/thre 93.9 7.5 0.00016 46.0 21.9 179 340-555 494-676 (699)
228 PF11701 UNC45-central: Myosin 93.3 0.42 9.1E-06 45.0 8.5 144 194-343 5-156 (157)
229 PF04063 DUF383: Domain of unk 93.3 0.46 1E-05 46.1 8.9 111 206-316 9-142 (192)
230 PF12719 Cnd3: Nuclear condens 93.3 5.7 0.00012 41.9 18.0 171 192-371 26-210 (298)
231 KOG2062 26S proteasome regulat 93.0 4.5 9.7E-05 46.3 16.8 97 683-799 553-651 (929)
232 PF12719 Cnd3: Nuclear condens 93.0 3.4 7.4E-05 43.6 15.8 162 157-328 34-208 (298)
233 PF12717 Cnd1: non-SMC mitotic 93.0 0.58 1.3E-05 45.2 9.1 91 377-488 2-93 (178)
234 KOG1645 RING-finger-containing 92.8 0.056 1.2E-06 56.4 1.8 58 33-94 5-67 (463)
235 smart00744 RINGv The RING-vari 92.7 0.17 3.8E-06 36.9 3.8 42 34-79 1-49 (49)
236 PF07814 WAPL: Wings apart-lik 92.6 6.2 0.00013 42.9 17.5 242 152-395 23-358 (361)
237 KOG2817 Predicted E3 ubiquitin 92.6 0.08 1.7E-06 55.5 2.7 42 33-78 335-380 (394)
238 KOG2274 Predicted importin 9 [ 92.3 27 0.00059 41.3 22.1 193 236-443 492-690 (1005)
239 KOG2611 Neurochondrin/leucine- 92.3 11 0.00024 41.0 17.8 182 239-441 16-224 (698)
240 KOG2274 Predicted importin 9 [ 92.2 28 0.00061 41.2 22.1 222 160-393 460-690 (1005)
241 KOG4535 HEAT and armadillo rep 92.0 0.24 5.2E-06 53.1 5.3 175 209-390 408-601 (728)
242 PF11701 UNC45-central: Myosin 92.0 0.77 1.7E-05 43.3 8.3 148 460-628 5-156 (157)
243 KOG1832 HIV-1 Vpr-binding prot 91.9 9.2 0.0002 44.7 17.6 151 318-488 602-774 (1516)
244 KOG1785 Tyrosine kinase negati 91.8 0.077 1.7E-06 54.9 1.5 48 33-84 370-417 (563)
245 KOG0825 PHD Zn-finger protein 91.7 0.048 1E-06 61.2 -0.2 47 31-83 122-171 (1134)
246 KOG1832 HIV-1 Vpr-binding prot 91.7 13 0.00029 43.4 18.5 332 204-547 365-786 (1516)
247 COG5194 APC11 Component of SCF 91.2 0.24 5.2E-06 39.0 3.2 44 33-82 32-80 (88)
248 KOG1788 Uncharacterized conser 91.2 8.8 0.00019 45.5 16.7 279 130-443 664-983 (2799)
249 KOG2611 Neurochondrin/leucine- 90.9 14 0.0003 40.3 16.8 129 155-287 16-162 (698)
250 COG5116 RPN2 26S proteasome re 90.7 0.95 2.1E-05 49.7 8.2 98 683-799 550-648 (926)
251 PF06025 DUF913: Domain of Unk 90.4 31 0.00067 37.7 20.8 102 188-289 101-208 (379)
252 COG5627 MMS21 DNA repair prote 90.4 0.25 5.3E-06 47.7 3.2 59 31-93 188-249 (275)
253 KOG2999 Regulator of Rac1, req 90.3 12 0.00026 41.5 16.0 165 319-497 85-252 (713)
254 KOG2025 Chromosome condensatio 90.2 36 0.00077 39.3 19.9 107 319-446 87-194 (892)
255 KOG0827 Predicted E3 ubiquitin 90.1 0.22 4.7E-06 51.7 2.8 50 30-82 2-55 (465)
256 PF06371 Drf_GBD: Diaphanous G 90.0 2.7 5.8E-05 40.9 10.4 110 151-264 67-186 (187)
257 KOG1248 Uncharacterized conser 89.9 56 0.0012 40.0 26.5 220 289-531 666-896 (1176)
258 PF05918 API5: Apoptosis inhib 89.8 18 0.0004 41.0 17.7 121 162-302 34-158 (556)
259 PF07814 WAPL: Wings apart-lik 89.4 20 0.00044 38.9 17.5 242 194-445 23-302 (361)
260 KOG1039 Predicted E3 ubiquitin 89.3 0.24 5.1E-06 52.3 2.4 54 29-82 158-220 (344)
261 KOG1566 Conserved protein Mo25 89.1 30 0.00066 35.8 19.4 200 146-348 75-288 (342)
262 KOG2999 Regulator of Rac1, req 89.1 18 0.00038 40.3 16.1 164 151-316 84-254 (713)
263 COG5109 Uncharacterized conser 89.1 0.23 4.9E-06 50.0 2.0 43 33-79 337-383 (396)
264 KOG2032 Uncharacterized conser 89.0 11 0.00024 41.2 14.5 152 148-302 252-412 (533)
265 KOG4692 Predicted E3 ubiquitin 88.9 0.27 5.8E-06 50.2 2.3 47 30-82 420-466 (489)
266 KOG0414 Chromosome condensatio 88.8 5.4 0.00012 48.1 13.0 159 319-515 921-1084(1251)
267 KOG1967 DNA repair/transcripti 88.6 3.3 7.1E-05 48.5 10.8 211 163-386 787-1018(1030)
268 KOG1493 Anaphase-promoting com 88.2 0.2 4.3E-06 39.1 0.7 48 32-82 31-80 (84)
269 KOG4464 Signaling protein RIC- 88.1 41 0.0009 36.1 20.4 245 162-444 109-404 (532)
270 KOG1571 Predicted E3 ubiquitin 87.8 0.25 5.4E-06 51.4 1.4 44 30-82 303-346 (355)
271 KOG1248 Uncharacterized conser 87.8 77 0.0017 38.9 23.9 224 247-489 665-900 (1176)
272 PF11793 FANCL_C: FANCL C-term 87.5 0.27 5.9E-06 39.0 1.2 51 32-82 2-65 (70)
273 KOG2956 CLIP-associating prote 87.3 23 0.0005 38.7 15.5 148 319-490 331-480 (516)
274 COG5209 RCD1 Uncharacterized p 87.3 8.4 0.00018 37.6 11.1 148 125-274 117-277 (315)
275 COG5209 RCD1 Uncharacterized p 87.0 15 0.00033 35.9 12.5 145 209-354 117-276 (315)
276 KOG1020 Sister chromatid cohes 86.8 99 0.0021 39.1 38.2 144 150-306 816-960 (1692)
277 KOG2025 Chromosome condensatio 86.4 39 0.00084 39.0 17.2 111 154-274 89-199 (892)
278 PF12031 DUF3518: Domain of un 86.4 1.8 3.8E-05 42.9 6.2 83 207-290 139-229 (257)
279 KOG1820 Microtubule-associated 85.7 26 0.00057 41.9 16.5 185 197-392 258-443 (815)
280 KOG1941 Acetylcholine receptor 85.6 0.2 4.4E-06 51.9 -0.6 67 10-80 343-413 (518)
281 PF05918 API5: Apoptosis inhib 85.4 7.3 0.00016 44.2 11.3 121 288-438 33-158 (556)
282 PF14447 Prok-RING_4: Prokaryo 85.1 0.52 1.1E-05 34.7 1.4 46 32-85 7-52 (55)
283 PF14668 RICTOR_V: Rapamycin-i 84.9 2.9 6.3E-05 33.4 5.8 60 701-764 4-63 (73)
284 KOG3161 Predicted E3 ubiquitin 84.3 0.51 1.1E-05 52.2 1.7 34 31-64 10-47 (861)
285 KOG2062 26S proteasome regulat 84.3 11 0.00024 43.3 11.8 70 192-271 554-624 (929)
286 KOG1991 Nuclear transport rece 84.1 1.1E+02 0.0023 37.1 21.1 136 211-351 391-537 (1010)
287 KOG3800 Predicted E3 ubiquitin 84.0 0.71 1.5E-05 46.4 2.4 45 34-83 2-51 (300)
288 PF12031 DUF3518: Domain of un 84.0 4 8.8E-05 40.5 7.4 80 164-244 138-226 (257)
289 PF14500 MMS19_N: Dos2-interac 84.0 54 0.0012 33.8 16.2 222 197-443 4-238 (262)
290 KOG0883 Cyclophilin type, U bo 83.9 0.79 1.7E-05 47.7 2.7 51 33-89 41-91 (518)
291 KOG4172 Predicted E3 ubiquitin 83.6 0.29 6.2E-06 35.5 -0.4 45 33-82 8-53 (62)
292 KOG1820 Microtubule-associated 83.4 38 0.00083 40.6 16.5 171 123-304 268-441 (815)
293 KOG4265 Predicted E3 ubiquitin 83.3 0.84 1.8E-05 47.5 2.7 45 33-83 291-336 (349)
294 PF05290 Baculo_IE-1: Baculovi 83.1 1.6 3.4E-05 38.6 3.8 51 32-85 80-134 (140)
295 PF08324 PUL: PUL domain; Int 82.5 22 0.00047 36.8 13.0 159 198-356 69-241 (268)
296 KOG1001 Helicase-like transcri 82.5 0.61 1.3E-05 54.3 1.4 46 33-83 455-500 (674)
297 PF06371 Drf_GBD: Diaphanous G 82.1 2.8 6.1E-05 40.7 5.9 76 145-220 102-186 (187)
298 KOG2930 SCF ubiquitin ligase, 81.6 1.3 2.8E-05 37.0 2.6 27 49-81 80-106 (114)
299 PF14570 zf-RING_4: RING/Ubox 81.1 1.2 2.7E-05 32.0 2.0 43 35-82 1-47 (48)
300 PF01347 Vitellogenin_N: Lipop 79.8 45 0.00098 39.3 16.0 181 319-531 397-587 (618)
301 KOG2956 CLIP-associating prote 78.6 1.1E+02 0.0024 33.7 17.7 172 163-345 300-476 (516)
302 KOG4653 Uncharacterized conser 78.5 65 0.0014 38.1 15.4 179 199-393 734-919 (982)
303 COG5175 MOT2 Transcriptional r 78.2 1.7 3.7E-05 44.3 2.8 46 34-84 16-65 (480)
304 PF01347 Vitellogenin_N: Lipop 77.3 60 0.0013 38.3 16.1 197 278-524 396-613 (618)
305 KOG1967 DNA repair/transcripti 77.3 7.1 0.00015 45.9 7.6 152 600-797 866-1020(1030)
306 smart00638 LPD_N Lipoprotein N 77.2 1.2E+02 0.0025 35.5 18.2 211 193-440 312-543 (574)
307 KOG4653 Uncharacterized conser 76.9 33 0.00071 40.4 12.5 181 323-533 733-918 (982)
308 PF11707 Npa1: Ribosome 60S bi 76.6 54 0.0012 35.1 14.0 109 152-262 58-184 (330)
309 PF14668 RICTOR_V: Rapamycin-i 76.5 12 0.00027 29.9 6.7 65 294-358 4-70 (73)
310 KOG0301 Phospholipase A2-activ 76.4 1.3E+02 0.0028 34.7 16.6 164 159-328 553-727 (745)
311 KOG0396 Uncharacterized conser 76.2 1.2 2.6E-05 46.5 1.0 48 33-85 331-381 (389)
312 PF08167 RIX1: rRNA processing 75.5 34 0.00073 32.5 10.7 108 193-304 26-141 (165)
313 PF05605 zf-Di19: Drought indu 75.4 1.4 3E-05 33.0 1.0 39 31-80 1-39 (54)
314 COG5219 Uncharacterized conser 75.4 1.3 2.8E-05 51.4 1.2 47 32-82 1469-1522(1525)
315 KOG4464 Signaling protein RIC- 75.1 1.3E+02 0.0028 32.6 17.2 85 205-289 110-199 (532)
316 PF06025 DUF913: Domain of Unk 74.8 1.4E+02 0.0029 32.8 17.2 96 234-329 106-208 (379)
317 PF11707 Npa1: Ribosome 60S bi 74.7 1.3E+02 0.0027 32.3 18.3 157 194-350 58-241 (330)
318 PF08167 RIX1: rRNA processing 74.7 21 0.00045 33.9 9.1 118 685-812 26-152 (165)
319 PF04641 Rtf2: Rtf2 RING-finge 74.6 2.3 4.9E-05 43.9 2.7 33 33-65 35-68 (260)
320 PF11865 DUF3385: Domain of un 74.4 42 0.0009 31.7 10.9 146 232-391 8-156 (160)
321 PF10363 DUF2435: Protein of u 73.8 19 0.00041 30.4 7.5 72 415-492 5-77 (92)
322 KOG0298 DEAD box-containing he 72.8 1.2 2.6E-05 53.8 0.2 48 27-80 1148-1196(1394)
323 KOG4185 Predicted E3 ubiquitin 72.8 3.1 6.7E-05 43.9 3.3 63 33-100 4-77 (296)
324 COG5116 RPN2 26S proteasome re 72.4 49 0.0011 37.0 11.9 126 197-344 521-648 (926)
325 PF08324 PUL: PUL domain; Int 72.3 37 0.0008 35.1 11.2 149 124-275 79-241 (268)
326 KOG3665 ZYG-1-like serine/thre 72.1 2.2E+02 0.0048 34.0 20.2 200 527-757 494-695 (699)
327 KOG0825 PHD Zn-finger protein 71.8 5.8 0.00013 45.4 5.1 52 28-79 92-150 (1134)
328 cd03561 VHS VHS domain family; 70.9 46 0.00099 30.2 10.1 72 150-221 37-112 (133)
329 KOG1814 Predicted E3 ubiquitin 70.9 5.3 0.00011 42.5 4.2 52 29-80 181-237 (445)
330 KOG3002 Zn finger protein [Gen 70.8 4 8.6E-05 42.6 3.4 61 29-101 45-106 (299)
331 KOG4362 Transcriptional regula 70.8 1.7 3.7E-05 49.7 0.7 67 31-100 20-86 (684)
332 PF14726 RTTN_N: Rotatin, an a 69.9 44 0.00095 28.5 8.8 74 226-301 22-95 (98)
333 KOG1566 Conserved protein Mo25 69.8 1.5E+02 0.0032 31.0 18.3 227 271-512 73-310 (342)
334 KOG1940 Zn-finger protein [Gen 67.5 3.2 6.9E-05 42.4 1.8 43 32-80 158-204 (276)
335 COG5656 SXM1 Importin, protein 67.4 2.6E+02 0.0056 32.9 18.3 272 329-635 428-715 (970)
336 COG5098 Chromosome condensatio 66.4 43 0.00093 38.4 10.2 105 151-267 934-1039(1128)
337 cd03569 VHS_Hrs_Vps27p VHS dom 65.8 20 0.00044 33.0 6.6 72 150-221 41-114 (142)
338 PF14353 CpXC: CpXC protein 65.4 3.4 7.3E-05 37.4 1.4 48 32-82 1-48 (128)
339 PF10363 DUF2435: Protein of u 64.8 24 0.00053 29.7 6.3 68 194-265 5-72 (92)
340 cd03568 VHS_STAM VHS domain fa 64.3 23 0.0005 32.7 6.7 71 151-221 38-110 (144)
341 PF14500 MMS19_N: Dos2-interac 64.1 1.8E+02 0.0039 30.0 16.5 216 155-392 4-237 (262)
342 cd03569 VHS_Hrs_Vps27p VHS dom 64.1 21 0.00046 32.8 6.4 68 460-529 43-110 (142)
343 smart00638 LPD_N Lipoprotein N 63.6 2.9E+02 0.0063 32.2 20.3 211 151-388 312-541 (574)
344 cd03568 VHS_STAM VHS domain fa 63.4 23 0.0005 32.7 6.5 69 460-530 39-107 (144)
345 PF11865 DUF3385: Domain of un 63.2 57 0.0012 30.7 9.3 144 278-440 11-155 (160)
346 PF14726 RTTN_N: Rotatin, an a 63.2 64 0.0014 27.5 8.5 68 190-260 28-95 (98)
347 PF08506 Cse1: Cse1; InterPro 62.4 1.1E+02 0.0025 33.2 12.6 145 460-626 212-370 (370)
348 smart00288 VHS Domain present 62.1 25 0.00055 32.0 6.5 68 460-528 39-106 (133)
349 PF14225 MOR2-PAG1_C: Cell mor 62.0 2E+02 0.0043 29.7 19.1 166 207-395 77-257 (262)
350 KOG0301 Phospholipase A2-activ 61.6 3.1E+02 0.0067 31.8 17.9 167 199-371 551-729 (745)
351 KOG2137 Protein kinase [Signal 61.5 59 0.0013 37.7 10.4 131 233-369 388-519 (700)
352 cd03561 VHS VHS domain family; 60.8 31 0.00067 31.4 6.8 70 460-530 39-109 (133)
353 PF13251 DUF4042: Domain of un 59.7 88 0.0019 30.2 9.9 112 688-802 43-175 (182)
354 PF03130 HEAT_PBS: PBS lyase H 58.8 7 0.00015 24.3 1.6 27 746-783 1-27 (27)
355 KOG4275 Predicted E3 ubiquitin 58.7 2.5 5.4E-05 42.5 -0.7 40 32-82 300-341 (350)
356 KOG1812 Predicted E3 ubiquitin 58.6 9.5 0.00021 41.6 3.6 50 32-81 146-199 (384)
357 PF11791 Aconitase_B_N: Aconit 58.5 22 0.00047 32.7 5.2 43 747-800 80-122 (154)
358 cd03567 VHS_GGA VHS domain fam 58.5 35 0.00075 31.3 6.7 70 151-220 39-115 (139)
359 KOG2137 Protein kinase [Signal 58.3 58 0.0013 37.7 9.7 133 191-330 388-521 (700)
360 COG5098 Chromosome condensatio 56.8 37 0.00081 38.9 7.7 119 685-809 300-423 (1128)
361 COG5218 YCG1 Chromosome conden 55.8 3.6E+02 0.0079 30.8 17.4 117 220-347 80-197 (885)
362 PF06416 DUF1076: Protein of u 55.7 7.9 0.00017 33.1 1.8 51 29-85 37-93 (113)
363 cd03567 VHS_GGA VHS domain fam 55.7 32 0.00068 31.6 5.9 68 460-528 40-111 (139)
364 PF07191 zinc-ribbons_6: zinc- 55.5 0.88 1.9E-05 35.5 -3.5 41 32-83 1-41 (70)
365 PF12530 DUF3730: Protein of u 55.3 2.4E+02 0.0051 28.5 19.8 206 279-516 2-217 (234)
366 PRK11088 rrmA 23S rRNA methylt 54.8 5.8 0.00012 41.3 1.1 26 32-57 2-30 (272)
367 smart00288 VHS Domain present 54.4 35 0.00077 31.0 6.1 71 151-221 38-111 (133)
368 PF04564 U-box: U-box domain; 53.5 6.7 0.00015 31.4 1.1 47 14-65 24-70 (73)
369 KOG2933 Uncharacterized conser 53.3 1.1E+02 0.0023 31.9 9.7 133 197-342 93-230 (334)
370 COG5218 YCG1 Chromosome conden 53.1 4E+02 0.0087 30.5 15.2 104 277-394 91-198 (885)
371 KOG1243 Protein kinase [Genera 52.7 2E+02 0.0044 33.5 12.7 148 147-305 327-475 (690)
372 PF00790 VHS: VHS domain; Int 52.3 36 0.00078 31.3 5.9 71 151-221 43-118 (140)
373 PF07800 DUF1644: Protein of u 50.9 5.3 0.00011 36.7 0.1 21 31-51 1-21 (162)
374 PHA02825 LAP/PHD finger-like p 50.5 21 0.00046 32.9 3.8 48 31-83 7-59 (162)
375 PF12530 DUF3730: Protein of u 50.2 2.8E+02 0.0062 27.9 19.1 138 237-392 3-151 (234)
376 PF12054 DUF3535: Domain of un 49.3 4.2E+02 0.0092 29.7 14.9 236 164-423 101-364 (441)
377 PF03854 zf-P11: P-11 zinc fin 49.2 6.3 0.00014 28.0 0.2 31 48-84 17-47 (50)
378 KOG2933 Uncharacterized conser 49.0 1.2E+02 0.0026 31.6 9.3 136 282-438 93-230 (334)
379 PF14663 RasGEF_N_2: Rapamycin 48.7 46 0.00099 29.4 5.7 31 685-715 9-39 (115)
380 PF06685 DUF1186: Protein of u 48.7 3.1E+02 0.0068 27.9 13.3 89 190-285 71-161 (249)
381 PF08506 Cse1: Cse1; InterPro 48.5 4E+02 0.0086 29.1 17.0 170 301-482 194-370 (370)
382 PRK14890 putative Zn-ribbon RN 48.3 14 0.00031 27.8 2.0 33 30-79 23-55 (59)
383 KOG4739 Uncharacterized protei 48.2 7 0.00015 38.7 0.5 49 43-101 15-64 (233)
384 KOG2114 Vacuolar assembly/sort 48.1 11 0.00023 44.1 2.0 45 27-80 835-880 (933)
385 PF00790 VHS: VHS domain; Int 48.1 37 0.00081 31.1 5.3 68 460-528 44-113 (140)
386 PF07923 N1221: N1221-like pro 47.5 36 0.00079 35.7 5.7 58 682-739 58-126 (293)
387 KOG1992 Nuclear export recepto 47.0 5.8E+02 0.013 30.6 23.9 185 82-280 339-543 (960)
388 PF04821 TIMELESS: Timeless pr 46.7 3.5E+02 0.0075 27.9 13.1 57 123-179 9-72 (266)
389 KOG1949 Uncharacterized conser 45.1 4.7E+02 0.01 30.7 13.7 183 155-346 179-370 (1005)
390 PF10272 Tmpp129: Putative tra 44.5 16 0.00035 39.0 2.5 41 46-86 302-354 (358)
391 PF11791 Aconitase_B_N: Aconit 44.4 18 0.00039 33.2 2.4 28 319-346 96-123 (154)
392 KOG1243 Protein kinase [Genera 44.2 5.9E+02 0.013 29.9 16.0 222 186-437 287-510 (690)
393 PF12074 DUF3554: Domain of un 43.4 4E+02 0.0087 28.5 13.2 220 278-515 23-257 (339)
394 PF10367 Vps39_2: Vacuolar sor 40.4 10 0.00022 32.8 0.3 32 29-60 75-108 (109)
395 cd00350 rubredoxin_like Rubred 40.2 21 0.00046 23.5 1.7 10 72-81 17-26 (33)
396 PF11864 DUF3384: Domain of un 39.8 6E+02 0.013 28.7 20.3 112 319-441 215-329 (464)
397 PF10521 DUF2454: Protein of u 39.7 2.4E+02 0.0051 29.4 10.4 74 319-392 121-203 (282)
398 PF14631 FancD2: Fanconi anaem 39.6 1E+03 0.022 31.3 20.3 62 466-535 443-504 (1426)
399 KOG2676 Uncharacterized conser 39.5 23 0.00049 37.2 2.6 65 128-192 376-442 (478)
400 PF11229 DUF3028: Protein of u 39.3 6.1E+02 0.013 28.6 13.9 230 233-487 96-353 (589)
401 PF10521 DUF2454: Protein of u 38.8 2E+02 0.0043 30.0 9.7 141 359-514 120-277 (282)
402 PHA02862 5L protein; Provision 38.2 24 0.00051 31.9 2.1 45 34-83 4-53 (156)
403 smart00567 EZ_HEAT E-Z type HE 38.2 39 0.00084 21.3 2.7 28 745-783 2-29 (30)
404 smart00531 TFIIE Transcription 37.9 18 0.00039 33.6 1.5 14 70-84 122-135 (147)
405 PF08216 CTNNBL: Catenin-beta- 37.9 38 0.00082 29.3 3.3 42 253-294 63-104 (108)
406 PF14446 Prok-RING_1: Prokaryo 36.1 32 0.00069 25.6 2.2 27 32-58 5-35 (54)
407 KOG4231 Intracellular membrane 35.9 40 0.00086 37.2 3.8 61 327-392 338-399 (763)
408 PF00096 zf-C2H2: Zinc finger, 34.9 14 0.00029 21.7 0.1 13 33-45 1-13 (23)
409 COG1592 Rubrerythrin [Energy p 34.3 17 0.00037 34.2 0.7 10 72-81 149-158 (166)
410 COG4530 Uncharacterized protei 34.2 32 0.0007 29.3 2.2 29 30-58 7-40 (129)
411 PF12830 Nipped-B_C: Sister ch 34.2 4.4E+02 0.0095 25.5 12.5 32 685-716 46-77 (187)
412 COG3813 Uncharacterized protei 33.9 36 0.00078 26.5 2.2 32 51-90 28-59 (84)
413 KOG3579 Predicted E3 ubiquitin 32.9 34 0.00073 34.6 2.5 46 32-78 268-317 (352)
414 PF14569 zf-UDP: Zinc-binding 32.8 61 0.0013 26.0 3.4 48 31-83 8-62 (80)
415 cd00729 rubredoxin_SM Rubredox 32.2 32 0.00069 22.9 1.5 10 72-81 18-27 (34)
416 PF12830 Nipped-B_C: Sister ch 30.7 1.1E+02 0.0023 29.7 5.7 64 732-801 11-74 (187)
417 PLN02189 cellulose synthase 30.0 40 0.00087 41.1 2.9 48 31-83 33-87 (1040)
418 KOG2169 Zn-finger transcriptio 29.8 54 0.0012 38.6 3.9 62 26-89 300-362 (636)
419 PLN02195 cellulose synthase A 29.4 42 0.0009 40.6 2.9 46 33-83 7-59 (977)
420 KOG1949 Uncharacterized conser 29.1 3.9E+02 0.0084 31.3 10.0 143 195-345 177-330 (1005)
421 PF06685 DUF1186: Protein of u 29.1 6.3E+02 0.014 25.7 13.6 74 273-356 69-153 (249)
422 KOG4718 Non-SMC (structural ma 28.9 33 0.00071 33.2 1.6 44 33-82 182-226 (235)
423 COG2888 Predicted Zn-ribbon RN 28.4 40 0.00086 25.4 1.6 37 26-79 21-57 (61)
424 PF04499 SAPS: SIT4 phosphatas 28.2 3.2E+02 0.007 30.9 9.6 96 412-512 20-128 (475)
425 PLN03086 PRLI-interacting fact 28.0 58 0.0013 37.3 3.6 15 50-64 459-473 (567)
426 PF06844 DUF1244: Protein of u 27.6 42 0.00092 25.9 1.7 12 54-65 12-23 (68)
427 PF14663 RasGEF_N_2: Rapamycin 27.5 1.5E+02 0.0033 26.1 5.5 39 192-230 8-46 (115)
428 COG5220 TFB3 Cdk activating ki 27.4 33 0.00072 33.6 1.4 43 31-78 9-57 (314)
429 PF09538 FYDLN_acid: Protein o 27.0 36 0.00078 29.6 1.4 15 30-44 7-21 (108)
430 PF10915 DUF2709: Protein of u 27.0 60 0.0013 30.8 2.9 28 33-65 88-115 (238)
431 PF05883 Baculo_RING: Baculovi 26.8 60 0.0013 29.2 2.8 44 32-81 26-78 (134)
432 COG5236 Uncharacterized conser 26.6 74 0.0016 33.1 3.7 47 31-81 60-106 (493)
433 KOG4231 Intracellular membrane 26.6 1E+02 0.0023 34.1 5.0 62 740-801 338-399 (763)
434 PRK14559 putative protein seri 26.2 49 0.0011 38.7 2.8 19 34-58 3-21 (645)
435 PF14225 MOR2-PAG1_C: Cell mor 26.0 7.4E+02 0.016 25.5 20.6 166 277-471 60-241 (262)
436 PF13251 DUF4042: Domain of un 25.9 4.7E+02 0.01 25.2 8.9 138 208-347 2-175 (182)
437 PF06676 DUF1178: Protein of u 25.5 27 0.00058 32.2 0.4 36 49-90 9-51 (148)
438 PF10571 UPF0547: Uncharacteri 25.3 37 0.0008 21.1 0.9 8 35-42 3-10 (26)
439 COG4049 Uncharacterized protei 25.1 20 0.00042 26.4 -0.4 12 33-44 18-29 (65)
440 cd03572 ENTH_epsin_related ENT 24.7 2.3E+02 0.005 25.3 6.1 53 460-512 40-92 (122)
441 cd00730 rubredoxin Rubredoxin; 24.4 31 0.00068 25.3 0.5 14 27-40 29-42 (50)
442 KOG1815 Predicted E3 ubiquitin 24.4 69 0.0015 36.0 3.5 51 30-80 68-121 (444)
443 cd03565 VHS_Tom1 VHS domain fa 24.2 1.7E+02 0.0038 26.8 5.5 70 110-179 41-115 (141)
444 TIGR02300 FYDLN_acid conserved 24.1 46 0.00099 29.5 1.5 15 30-44 7-21 (129)
445 PLN02638 cellulose synthase A 23.9 74 0.0016 39.1 3.7 48 31-83 16-70 (1079)
446 PF13894 zf-C2H2_4: C2H2-type 23.9 30 0.00064 20.0 0.3 12 33-44 1-12 (24)
447 PLN02436 cellulose synthase A 23.9 58 0.0013 39.8 2.8 48 31-83 35-89 (1094)
448 PF01365 RYDR_ITPR: RIH domain 23.9 1.4E+02 0.0029 29.5 5.1 102 225-328 34-153 (207)
449 PHA03096 p28-like protein; Pro 23.8 55 0.0012 34.0 2.3 45 33-80 179-231 (284)
450 PRK05978 hypothetical protein; 23.6 42 0.00091 31.0 1.3 32 32-84 33-64 (148)
451 PF14205 Cys_rich_KTR: Cystein 23.5 62 0.0013 24.0 1.8 10 72-81 28-37 (55)
452 COG1773 Rubredoxin [Energy pro 23.5 56 0.0012 24.4 1.6 14 27-40 31-44 (55)
453 smart00132 LIM Zinc-binding do 23.2 56 0.0012 21.6 1.6 35 34-82 1-37 (39)
454 cd03565 VHS_Tom1 VHS domain fa 23.1 2.7E+02 0.0058 25.6 6.5 68 460-528 40-110 (141)
455 KOG2038 CAATT-binding transcri 23.1 1E+03 0.022 28.4 11.9 114 359-498 305-421 (988)
456 KOG2462 C2H2-type Zn-finger pr 23.1 63 0.0014 32.9 2.4 40 33-85 188-228 (279)
457 cd03572 ENTH_epsin_related ENT 22.5 2.9E+02 0.0062 24.7 6.2 71 413-485 38-117 (122)
458 PF10274 ParcG: Parkin co-regu 22.5 6.8E+02 0.015 24.2 9.1 71 152-222 40-110 (183)
459 PLN03076 ARF guanine nucleotid 22.3 2E+03 0.044 29.3 18.2 139 247-390 1148-1297(1780)
460 PF00301 Rubredoxin: Rubredoxi 22.0 37 0.00081 24.5 0.5 14 27-40 29-42 (47)
461 KOG2032 Uncharacterized conser 21.6 1.2E+03 0.026 26.3 20.0 122 247-369 269-398 (533)
462 PF09324 DUF1981: Domain of un 21.3 3.3E+02 0.0072 22.5 6.1 67 682-756 15-85 (86)
463 PF14666 RICTOR_M: Rapamycin-i 21.2 3.3E+02 0.0071 27.3 7.2 83 704-801 143-225 (226)
464 PLN02915 cellulose synthase A 21.2 76 0.0016 38.8 3.0 48 31-83 14-68 (1044)
465 COG1675 TFA1 Transcription ini 21.2 99 0.0021 29.5 3.2 16 72-87 132-147 (176)
466 PRK04023 DNA polymerase II lar 21.1 91 0.002 37.8 3.6 45 31-83 625-674 (1121)
467 PF08746 zf-RING-like: RING-li 21.0 88 0.0019 22.0 2.2 39 36-78 2-43 (43)
468 PF09237 GAGA: GAGA factor; I 20.9 48 0.001 24.3 0.8 24 72-100 24-47 (54)
469 PRK01343 zinc-binding protein; 20.6 1.2E+02 0.0026 22.9 2.9 34 32-65 9-42 (57)
470 KOG0413 Uncharacterized conser 20.5 1.7E+02 0.0038 35.3 5.5 128 377-533 945-1073(1529)
471 KOG2462 C2H2-type Zn-finger pr 20.4 74 0.0016 32.4 2.3 13 72-84 187-199 (279)
472 KOG0314 Predicted E3 ubiquitin 20.2 45 0.00097 36.7 0.9 70 27-103 214-287 (448)
473 PF09450 DUF2019: Domain of un 20.0 61 0.0013 28.0 1.4 27 686-712 49-75 (106)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=4.4e-56 Score=536.22 Aligned_cols=625 Identities=17% Similarity=0.225 Sum_probs=517.3
Q ss_pred hhhccCC-CCcccHHHHHHHHHHHhhcCCcccccccc-cCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhc
Q 003530 113 RKSLNLG-SSESDIMPALKYVQYFCQSSRSNKHVVHN-SELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQ 190 (813)
Q Consensus 113 ~~~l~~~-~~~~~~~~al~~l~~l~~~~~~~r~~i~~-~g~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~ 190 (813)
+++|.+. ++.++...++..|+.+++.++++|..|.+ .|+||.|+.+|.+++..++..|+.+|.+++.+ ++++..|+.
T Consensus 19 ve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~-e~nk~~Iv~ 97 (2102)
T PLN03200 19 IEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKE-EDLRVKVLL 97 (2102)
T ss_pred HHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-HHHHHHHHH
Confidence 3444433 23456667899999999999999999985 99999999999999999999999999999987 589999999
Q ss_pred CCCHHHHHHHhccCcHHHHHHHHHHHHHhhcC---chhHhHHhhhhchHHHHHHhcccCCC-CHHHHHHHHHHHHhhccC
Q 003530 191 GDTVRTIVKFLSHELSREREEAVSLLYELSKS---EALCEKIGSINGAILILVGMTSSKSE-NLLTVEKAEKTLANLEKC 266 (813)
Q Consensus 191 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~---~~~~~~i~~~~g~i~~Lv~lL~~~s~-~~~~~~~a~~~L~~L~~~ 266 (813)
.|+||+|+.+|++++.+.|+.|+.+|++|+.+ +.++..|+...|+||.|+.+++.++. +..+++.++.+|+||+.+
T Consensus 98 ~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~ 177 (2102)
T PLN03200 98 GGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGS 177 (2102)
T ss_pred cCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999987 44566776678999999999994221 334677889999999999
Q ss_pred CccHH-HHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCC-chhHHHHHhhh-HHHHHHHHhcC-CHHHHHHHHHHHH
Q 003530 267 ENNVR-QMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALN-SDVKVLVARTV-GSCLINIMKSG-NMQAREAALKALN 342 (813)
Q Consensus 267 ~~~~~-~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g-i~~Lv~lL~~~-~~~~~~~a~~aL~ 342 (813)
++++. .+++.|+||.|+.+|.++++..+.+++.+|.+++.. ++.+..+.+.| ||.|+++|+++ +..+++.|+++|.
T Consensus 178 ~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~ 257 (2102)
T PLN03200 178 TDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALE 257 (2102)
T ss_pred ccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHH
Confidence 99885 568999999999999999999999999999888875 66888887776 89999999875 5689999999999
Q ss_pred HhhCC-cccHHHHHHcCChHHHHHHHhccCCC----CCChhHHHHHHHHHHHHHhcCCC-----------Ccc-------
Q 003530 343 QISSC-EPSAKVLIHAGILPPLVKDLFTVGSN----HLPMRLKEVSATILANVVNSGHD-----------FDS------- 399 (813)
Q Consensus 343 ~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~----~~~~~~~~~a~~~L~nL~~~~~~-----------~~~------- 399 (813)
||+.+ ++++..+++.|+||+|++++.+.... ..+..+++.|+|+|.|||..... .+.
T Consensus 258 nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada 337 (2102)
T PLN03200 258 ALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADT 337 (2102)
T ss_pred HHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHH
Confidence 99995 68999999999999999999853210 12356799999999999984211 000
Q ss_pred ----------c--------ccC--------------CCC---------------------ccccchhhHHHHHHhhcCCC
Q 003530 400 ----------I--------TVG--------------PDN---------------------QTLVSEDIVHNLLHLISNTG 426 (813)
Q Consensus 400 ----------~--------~~~--------------~~~---------------------~~l~~~~~v~~Lv~lL~~~~ 426 (813)
+ .++ ++. ..+.+.++++.||.||..++
T Consensus 338 ~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~ 417 (2102)
T PLN03200 338 LGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMAT 417 (2102)
T ss_pred HhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCC
Confidence 0 000 000 01233456677888888888
Q ss_pred hHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHH
Q 003530 427 PTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGS 506 (813)
Q Consensus 427 ~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~ 506 (813)
.++|++++++|++|+.++. +.+..+.+.|+++.|+++|.+++..+|..|++++.+|+.. +++....+.+. |++++
T Consensus 418 ~evQ~~Av~aL~~L~~~~~---e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~-ndenr~aIiea-GaIP~ 492 (2102)
T PLN03200 418 ADVQEELIRALSSLCCGKG---GLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDE-VDESKWAITAA-GGIPP 492 (2102)
T ss_pred HHHHHHHHHHHHHHhCCCH---HHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHC-CCHHH
Confidence 9999999999999998865 6788899999999999999999999999999999999964 33334566666 99999
Q ss_pred HHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhhhccccccCCccchhhhHhHHHHHHHHhcc
Q 003530 507 LIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFV 586 (813)
Q Consensus 507 Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~ 586 (813)
|+++|.+++. +++..|+++|+|++.++.+.+..+.+.|+++.|+++|.+ .....++.++.+|.+++..
T Consensus 493 LV~LL~s~~~--~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~s----------gd~~~q~~Aa~AL~nLi~~ 560 (2102)
T PLN03200 493 LVQLLETGSQ--KAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKN----------GGPKGQEIAAKTLTKLVRT 560 (2102)
T ss_pred HHHHHcCCCH--HHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhC----------CCHHHHHHHHHHHHHHHhc
Confidence 9999998885 999999999999999777777777789999999999986 2356788899999888632
Q ss_pred CCCChH---------------H---------------------HHHHHHcCchHHHHHHHhcCCchHHHHHHHHHHhhhc
Q 003530 587 LSDEPD---------------A---------------------IALCCEHNLAALFIELLQSNGLDKVQMVSATALENLS 630 (813)
Q Consensus 587 l~~~~~---------------~---------------------~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~ls 630 (813)
.+++ . ++.....|++|.|++||+++ ++.+|+.|+++|.++.
T Consensus 561 --~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg-s~~ikk~Aa~iLsnL~ 637 (2102)
T PLN03200 561 --ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS-KEETQEKAASVLADIF 637 (2102)
T ss_pred --cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC-CHHHHHHHHHHHHHHh
Confidence 1211 1 11122478999999999999 9999999999999998
Q ss_pred cccccccCCCCCCCCCCCcccccccccCCCCCCCCcccccccCccccchhhhccchHHHHHhhccCchhHHHHHHHHHHh
Q 003530 631 LESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALST 710 (813)
Q Consensus 631 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gai~~Lv~lL~~~~~~v~~~A~~AL~~ 710 (813)
...++. .-.++..|+|+||+.+|.+.+.+++..|++||.+
T Consensus 638 a~~~d~----------------------------------------~~avv~agaIpPLV~LLss~~~~v~keAA~AL~n 677 (2102)
T PLN03200 638 SSRQDL----------------------------------------CESLATDEIINPCIKLLTNNTEAVATQSARALAA 677 (2102)
T ss_pred cCChHH----------------------------------------HHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 654321 1136789999999999999999999999999999
Q ss_pred hhhcCcchhhHHHHHHhhcCcHHHHHHHhhcCChHHHHHHHHHHHHHHcchhhhhhhcCCCcchHHHHHHhhhcCchhHH
Q 003530 711 VIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQ 790 (813)
Q Consensus 711 L~~~~~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~~a~~aL~~i~~~~~~~~~~~~~~~~~~~Lv~~l~~~~~~~~~ 790 (813)
|+.... +.+...+.+.|+|++|+++| ...+.++.+.|+.+|.+|+.+.+.+..+...+. +++|+++|++|++..|+
T Consensus 678 L~~~~~--~~q~~~~v~~GaV~pL~~LL-~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~-I~~Lv~lLr~G~~~~k~ 753 (2102)
T PLN03200 678 LSRSIK--ENRKVSYAAEDAIKPLIKLA-KSSSIEVAEQAVCALANLLSDPEVAAEALAEDI-ILPLTRVLREGTLEGKR 753 (2102)
T ss_pred HHhCCC--HHHHHHHHHcCCHHHHHHHH-hCCChHHHHHHHHHHHHHHcCchHHHHHHhcCc-HHHHHHHHHhCChHHHH
Confidence 997543 23446678999999999999 489999999999999999999999888876555 57999999999999999
Q ss_pred HHHHHHHHhccc
Q 003530 791 IAERALKHIDKI 802 (813)
Q Consensus 791 ~Aa~~L~~l~~~ 802 (813)
.|+++|.+|.+-
T Consensus 754 ~Aa~AL~~L~~~ 765 (2102)
T PLN03200 754 NAARALAQLLKH 765 (2102)
T ss_pred HHHHHHHHHHhC
Confidence 999999999863
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.2e-52 Score=506.53 Aligned_cols=623 Identities=21% Similarity=0.190 Sum_probs=499.9
Q ss_pred hHhhhccCCCCcccHHHHHHHHHHHhhcCCcccccccccCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccC--cchh-hh
Q 003530 111 MARKSLNLGSSESDIMPALKYVQYFCQSSRSNKHVVHNSELIPMIIDMLKSSSRKVRCTALETLRIVVEED--DDNK-EI 187 (813)
Q Consensus 111 ~~~~~l~~~~~~~~~~~al~~l~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~--~~~~-~~ 187 (813)
.++..|.+++ ...+..++..+.+++.. +.+|..|...|+||+|+.+|++++.+.++.|+.+|..|+.++ ++++ ..
T Consensus 62 ~LV~lL~sg~-~~vk~nAaaaL~nLS~~-e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I 139 (2102)
T PLN03200 62 LLVSLLRSGT-LGAKVNAAAVLGVLCKE-EDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKI 139 (2102)
T ss_pred HHHHHHcCCC-HHHHHHHHHHHHHHhcC-HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhh
Confidence 3455565433 33344567778888765 778899999999999999999999999999999999999875 4555 45
Q ss_pred hhcCCCHHHHHHHhccCc---HHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhc
Q 003530 188 LGQGDTVRTIVKFLSHEL---SREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLE 264 (813)
Q Consensus 188 i~~~g~i~~Lv~lL~~~~---~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~ 264 (813)
++..|+||.|+.+|++++ ...++.++.+|++|+.+.+++...+.+.|++|.|+.+|+ ++++..+.+|+.+|.+++
T Consensus 140 ~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLs--S~d~~lQ~eAa~aLa~La 217 (2102)
T PLN03200 140 FSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLS--SGNSDAQANAASLLARLM 217 (2102)
T ss_pred hhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHH
Confidence 668999999999999874 335677889999999999887655446799999999999 889999999999998887
Q ss_pred cC-CccHHHHHHcCChHHHHHHHccC-CHHHHHHHHHHHHHhcCC-chhHHHHHhhh-HHHHHHHHhcCC---------H
Q 003530 265 KC-ENNVRQMAENGRLQPLLTQILEG-PQETKLSLAAFLGDLALN-SDVKVLVARTV-GSCLINIMKSGN---------M 331 (813)
Q Consensus 265 ~~-~~~~~~i~~~G~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g-i~~Lv~lL~~~~---------~ 331 (813)
.+ ++.+..+++.|+||.|+++|+++ +..+|++|+++|.+|+.+ ++++..+.+.| +++|++++.+++ .
T Consensus 218 ss~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~ 297 (2102)
T PLN03200 218 MAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQ 297 (2102)
T ss_pred cCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccch
Confidence 54 66888999999999999999875 569999999999999994 67888888876 899999998654 3
Q ss_pred HHHHHHHHHHHHhhCCc-c-----------cHH-------------------------HHHHc-CChHHHHHHHhccCCC
Q 003530 332 QAREAALKALNQISSCE-P-----------SAK-------------------------VLIHA-GILPPLVKDLFTVGSN 373 (813)
Q Consensus 332 ~~~~~a~~aL~~Ls~~~-~-----------~~~-------------------------~i~~~-g~i~~Lv~lL~~~~~~ 373 (813)
.++++|+++|.|||... . .+. .+++. .+++.|++++++....
T Consensus 298 ~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~ 377 (2102)
T PLN03200 298 ALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTK 377 (2102)
T ss_pred HHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCc
Confidence 45899999999998831 1 100 00111 1224444444432100
Q ss_pred -------------------------------------CCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHH
Q 003530 374 -------------------------------------HLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVH 416 (813)
Q Consensus 374 -------------------------------------~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~ 416 (813)
..+.++++.+++.|++|+.++.+... .+...|+++
T Consensus 378 ~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~--------aIi~~ggIp 449 (2102)
T PLN03200 378 LVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWE--------ALGGREGVQ 449 (2102)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHH--------HHHHcCcHH
Confidence 01367888999999999877554433 577789999
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHH
Q 003530 417 NLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADA 496 (813)
Q Consensus 417 ~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~ 496 (813)
.|+++|.++++.+|+.++++|.+++.... +.+..+.++|++++|+++|.+++.+++..|+++|.|++.+ +..+...
T Consensus 450 ~LV~LL~s~s~~iQ~~A~~~L~nLa~~nd---enr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir~i 525 (2102)
T PLN03200 450 LLISLLGLSSEQQQEYAVALLAILTDEVD---ESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-SEDIRAC 525 (2102)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCCH---HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHHHH
Confidence 99999999999999999999999998654 5777899999999999999999999999999999999974 4455555
Q ss_pred HhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCCCCH-H------------------------------------HH
Q 003530 497 LRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDL-G------------------------------------LT 539 (813)
Q Consensus 497 l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~-~------------------------------------~~ 539 (813)
+... |++++|+++|++++. +.+..|+++|.+|..+.. . .+
T Consensus 526 V~~a-GAIppLV~LL~sgd~--~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~ 602 (2102)
T PLN03200 526 VESA-GAVPALLWLLKNGGP--KGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVR 602 (2102)
T ss_pred HHHC-CCHHHHHHHHhCCCH--HHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHH
Confidence 6566 999999999999875 999999999999953211 0 01
Q ss_pred HHHHhcCcHHHHHHHhhhhccccccCCccchhhhHhHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHHhcCCchHHH
Q 003530 540 RQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQ 619 (813)
Q Consensus 540 ~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~vk 619 (813)
+.....|+++.|+++|.+ .+...++.|+++|.+++.. +++..+.+...|++|.++.+|+++ +..++
T Consensus 603 ~g~~~~ggL~~Lv~LL~s----------gs~~ikk~Aa~iLsnL~a~---~~d~~~avv~agaIpPLV~LLss~-~~~v~ 668 (2102)
T PLN03200 603 EGSAANDALRTLIQLLSS----------SKEETQEKAASVLADIFSS---RQDLCESLATDEIINPCIKLLTNN-TEAVA 668 (2102)
T ss_pred HhhhccccHHHHHHHHcC----------CCHHHHHHHHHHHHHHhcC---ChHHHHHHHHcCCHHHHHHHHhcC-ChHHH
Confidence 111246899999999987 2467899999999999975 888888899999999999999998 99999
Q ss_pred HHHHHHHhhhccccccccCCCCCCCCCCCcccccccccCCCCCCCCcccccccCccccchhhhccchHHHHHhhccCchh
Q 003530 620 MVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEK 699 (813)
Q Consensus 620 ~~Aa~aL~~ls~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gai~~Lv~lL~~~~~~ 699 (813)
+.||++|.+++..... .+...++++|+|+||+++|.+.|.+
T Consensus 669 keAA~AL~nL~~~~~~---------------------------------------~q~~~~v~~GaV~pL~~LL~~~d~~ 709 (2102)
T PLN03200 669 TQSARALAALSRSIKE---------------------------------------NRKVSYAAEDAIKPLIKLAKSSSIE 709 (2102)
T ss_pred HHHHHHHHHHHhCCCH---------------------------------------HHHHHHHHcCCHHHHHHHHhCCChH
Confidence 9999999999864321 1223467899999999999999999
Q ss_pred HHHHHHHHHHhhhhcCcchhhHHHHHHhhcCcHHHHHHHhhcCChHHHHHHHHHHHHHHcchhhhh---hhcCCCcchHH
Q 003530 700 VVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAY---EVSGDPNVSTA 776 (813)
Q Consensus 700 v~~~A~~AL~~L~~~~~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~~a~~aL~~i~~~~~~~~---~~~~~~~~~~~ 776 (813)
+++.|+.||.+|+.+++ +...+.+.|+|++|+++|+ ++++..|+.|+|+|.++++.....+ .+....+.+.+
T Consensus 710 v~e~Al~ALanLl~~~e----~~~ei~~~~~I~~Lv~lLr-~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~ 784 (2102)
T PLN03200 710 VAEQAVCALANLLSDPE----VAAEALAEDIILPLTRVLR-EGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLA 784 (2102)
T ss_pred HHHHHHHHHHHHHcCch----HHHHHHhcCcHHHHHHHHH-hCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHH
Confidence 99999999999999876 6677888999999999995 9999999999999999997633222 23333445679
Q ss_pred HHHHhhhcCchhHHH--HHHHHHHhcccCCCCCCCCC
Q 003530 777 LVDAFQHADYRTRQI--AERALKHIDKIPNFSGIFPN 811 (813)
Q Consensus 777 Lv~~l~~~~~~~~~~--Aa~~L~~l~~~~~~s~~~~~ 811 (813)
|+++|...|.+.... |..+|..|.+ .+.++.|++
T Consensus 785 l~~~L~~~~~~~~~~~~al~~l~~l~~-~~~~~~~~~ 820 (2102)
T PLN03200 785 LVDLLNSTDLDSSATSEALEALALLAR-TKGGANFSH 820 (2102)
T ss_pred HHHHHhcCCcchhhHHHHHHHHHHHHh-hcccCCCCC
Confidence 999999999877776 9999999999 666666543
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.6e-35 Score=308.98 Aligned_cols=410 Identities=16% Similarity=0.228 Sum_probs=350.8
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHHHhcCCch---hHHHHHhhh-HHHHHHHHhc-CCHHHHHHHHHHHHHhhCC-cccHH
Q 003530 279 LQPLLTQILEGPQETKLSLAAFLGDLALNSD---VKVLVARTV-GSCLINIMKS-GNMQAREAALKALNQISSC-EPSAK 352 (813)
Q Consensus 279 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~---~~~~i~~~g-i~~Lv~lL~~-~~~~~~~~a~~aL~~Ls~~-~~~~~ 352 (813)
.+.++..+.+++...+..+...+..+...+. ....+.. | +|.+|+.|.. .++.++..|++||.|+++. .+..+
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~-G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~ 146 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQS-GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK 146 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHc-CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc
Confidence 6788888889988888888888888876443 4455555 6 8999999964 5689999999999999995 57778
Q ss_pred HHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCCh-HHHH
Q 003530 353 VLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGP-TIEC 431 (813)
Q Consensus 353 ~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~-~~~~ 431 (813)
.++++|++|.++.++.+. +..+++.|+|+|.|++..++..+. .+.+.|++++|+.++...++ ...+
T Consensus 147 ~vv~agavp~fi~Ll~s~-----~~~v~eQavWALgNIagds~~~Rd--------~vl~~g~l~pLl~~l~~~~~~~~lR 213 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSP-----SADVREQAVWALGNIAGDSPDCRD--------YVLSCGALDPLLRLLNKSDKLSMLR 213 (514)
T ss_pred ccccCCchHHHHHHhcCC-----cHHHHHHHHHHHhccccCChHHHH--------HHHhhcchHHHHHHhccccchHHHH
Confidence 889999999999999975 489999999999999999887776 57789999999999997665 7888
Q ss_pred HHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhh
Q 003530 432 KLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVI 511 (813)
Q Consensus 432 ~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll 511 (813)
++.|+|.+||.+......... + ...++.|..++.+.|+++...|+|++.+|+++.++.+ +.+... |.++.||.+|
T Consensus 214 n~tW~LsNlcrgk~P~P~~~~-v--~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~i-q~vi~~-gvv~~LV~lL 288 (514)
T KOG0166|consen 214 NATWTLSNLCRGKNPSPPFDV-V--APILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKI-QMVIDA-GVVPRLVDLL 288 (514)
T ss_pred HHHHHHHHHHcCCCCCCcHHH-H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHH-HHHHHc-cchHHHHHHH
Confidence 999999999998432111111 1 2458999999999999999999999999998655554 555556 8999999999
Q ss_pred hcCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhhhccccccCCccchhhhHhHHHHHHHHhccCCCCh
Q 003530 512 SENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEP 591 (813)
Q Consensus 512 ~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~ 591 (813)
.+++. .++..|+.+++|+..++...++.+.+.|+++.|..++... ....+++.|+++++|+|.+ ++
T Consensus 289 ~~~~~--~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s---------~~~~ikkEAcW~iSNItAG---~~ 354 (514)
T KOG0166|consen 289 GHSSP--KVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSS---------PKESIKKEACWTISNITAG---NQ 354 (514)
T ss_pred cCCCc--ccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccC---------cchhHHHHHHHHHHHhhcC---CH
Confidence 99996 8999999999999999999999999999999999999852 2345888999999999987 99
Q ss_pred HHHHHHHHcCchHHHHHHHhcCCchHHHHHHHHHHhhhccccccccCCCCCCCCCCCcccccccccCCCCCCCCcccccc
Q 003530 592 DAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGL 671 (813)
Q Consensus 592 ~~~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~ls~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (813)
+..+.+.++|++|.|+.+|+++ +..+|++|||++.|++.++.
T Consensus 355 ~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~------------------------------------- 396 (514)
T KOG0166|consen 355 EQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGT------------------------------------- 396 (514)
T ss_pred HHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCC-------------------------------------
Confidence 9999999999999999999999 99999999999999876532
Q ss_pred cCccccchhhhccchHHHHHhhccCchhHHHHHHHHHHhhhhcCcch-----hhHHHHHHhhcCcHHHHHHHhhcCChHH
Q 003530 672 CSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDI-----EQGVMVLCEAQGIKPILDVLLEKRTENL 746 (813)
Q Consensus 672 ~~~~~~~~l~~~gai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~-----~~~~~~i~~~~~v~~L~~ll~~~~~~~~ 746 (813)
++...++++.|.|+||+++|.-.|..+..+++.+|.++..-++.. +.....|.++||+.++-.+- .+.++++
T Consensus 397 --~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ-~hen~~I 473 (514)
T KOG0166|consen 397 --PEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQ-SHENEEI 473 (514)
T ss_pred --HHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhh-ccccHHH
Confidence 255668999999999999999999999999999999998654421 34678899999999996665 6999999
Q ss_pred HHHHHHHHHHHHcchh
Q 003530 747 QRRAVWVVERILRTDD 762 (813)
Q Consensus 747 ~~~a~~aL~~i~~~~~ 762 (813)
+.+|...++++|..++
T Consensus 474 y~~A~~II~~yf~~e~ 489 (514)
T KOG0166|consen 474 YKKAYKIIDTYFSEED 489 (514)
T ss_pred HHHHHHHHHHhcCCCc
Confidence 9999999999997653
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-35 Score=292.90 Aligned_cols=483 Identities=18% Similarity=0.219 Sum_probs=388.4
Q ss_pred hhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccC
Q 003530 187 ILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKC 266 (813)
Q Consensus 187 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~ 266 (813)
.....+-+..+.-+--+.+...+..|+.+...+... ...++. ...++++.-++. +.++.++..+..++.|++.+
T Consensus 42 ~fyS~~plraltvL~ySDnlnlqrsaalafAeitek--~vr~Vs--res~epvl~llq--s~d~~Iq~aa~~alGnlAVn 115 (550)
T KOG4224|consen 42 SFYSASPLRALTVLKYSDNLNLQRSAALAFAEITEK--GVRRVS--RESNEPVLALLQ--SCDKCIQCAAGEALGNLAVN 115 (550)
T ss_pred cccCCCccchheeeeeccccccchHHHHHHHHHHHH--HHHHhh--hhhhhHHHHHHh--Ccchhhhhhhhhhhccceec
Confidence 334444455554444444555555555555444322 122222 256777788888 89999999999999999999
Q ss_pred CccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhHHHHHhhh-HHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 003530 267 ENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTV-GSCLINIMKSGNMQAREAALKALNQIS 345 (813)
Q Consensus 267 ~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g-i~~Lv~lL~~~~~~~~~~a~~aL~~Ls 345 (813)
-+|+..|++.+++++|+.-+..+..+++.+++.+|++|+..+++|..|+..| +.+|+++-++.+..++.++.++|.||.
T Consensus 116 ~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmT 195 (550)
T KOG4224|consen 116 MENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMT 195 (550)
T ss_pred cCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999987 799999888889999999999999999
Q ss_pred CCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchh--hHHHHHHhhc
Q 003530 346 SCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSED--IVHNLLHLIS 423 (813)
Q Consensus 346 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~--~v~~Lv~lL~ 423 (813)
...++|+.++.+|++|.||.++++. +..++++|+.++.|++-....++ .+.+.+ .|+.|+.|+.
T Consensus 196 hs~EnRr~LV~aG~lpvLVsll~s~-----d~dvqyycttaisnIaVd~~~Rk---------~Laqaep~lv~~Lv~Lmd 261 (550)
T KOG4224|consen 196 HSRENRRVLVHAGGLPVLVSLLKSG-----DLDVQYYCTTAISNIAVDRRARK---------ILAQAEPKLVPALVDLMD 261 (550)
T ss_pred hhhhhhhhhhccCCchhhhhhhccC-----ChhHHHHHHHHhhhhhhhHHHHH---------HHHhcccchHHHHHHHHh
Confidence 9999999999999999999999975 48999999999999987655444 344444 9999999999
Q ss_pred CCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhccccc
Q 003530 424 NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQ 503 (813)
Q Consensus 424 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~ 503 (813)
++++++|..|..+|.+++.+.. .+..|.++|++|.++++|+++.-......+.++++++-+..++ ..+.+. |.
T Consensus 262 ~~s~kvkcqA~lALrnlasdt~----Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe--~lI~da-gf 334 (550)
T KOG4224|consen 262 DGSDKVKCQAGLALRNLASDTE----YQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNE--VLIADA-GF 334 (550)
T ss_pred CCChHHHHHHHHHHhhhcccch----hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcc--cceecc-cc
Confidence 9999999999999999999875 4556888999999999999988888888899999999766555 345555 99
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhhhccccccCCccchhhhHhHHHHHHHH
Q 003530 504 LGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARV 583 (813)
Q Consensus 504 i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~ 583 (813)
+++||++|+-.++ +++|..|..+|.||+......+..+.++|+||.+..++.+. .-.+++..-+++..+
T Consensus 335 l~pLVrlL~~~dn-EeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~----------pvsvqseisac~a~L 403 (550)
T KOG4224|consen 335 LRPLVRLLRAGDN-EEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDG----------PVSVQSEISACIAQL 403 (550)
T ss_pred hhHHHHHHhcCCc-hhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC----------ChhHHHHHHHHHHHH
Confidence 9999999999997 67999999999999998888899999999999999999872 234566666677777
Q ss_pred hccCCCChHHHHHHHHcCchHHHHHHHhcCCchHHHHHHHHHHhhhccccccccCCCCCCCCCCCcccccccccCCCCCC
Q 003530 584 TFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITG 663 (813)
Q Consensus 584 ~~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~ls~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (813)
+. +...+..+.+.|++|.|+.++.+. +.+++-+||.+|.||+.+..+..++.+ |.. +|
T Consensus 404 al----~d~~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss~v~~YarviE------------awd-~P---- 461 (550)
T KOG4224|consen 404 AL----NDNDKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSSDVEHYARVIE------------AWD-HP---- 461 (550)
T ss_pred Hh----ccccHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhhhhHHHHHHHH------------Hhc-Cc----
Confidence 63 455567788999999999999999 999999999999999988776544321 110 01
Q ss_pred CCcccccccCccccchhhhccchHHHHHhhccCchhHHHHHHHHHHhhhhcCcchhhHHHHHHhhcCcHHHHHHHhhcCC
Q 003530 664 LCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRT 743 (813)
Q Consensus 664 ~~~~~~~~~~~~~~~~l~~~gai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~~~~~v~~L~~ll~~~~~ 743 (813)
..|.=..|+..|.+.+.-++..|.+++..|+.++. +++..+++ .+
T Consensus 462 ------------------~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~---------------~~~~~~i~--~~ 506 (550)
T KOG4224|consen 462 ------------------VQGIQGRLARFLASHELTFRHIARWTIQQLLEDHD---------------LPLTAFIQ--SS 506 (550)
T ss_pred ------------------chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC---------------ccHHHHHh--Cc
Confidence 13444579999999999999999999999986654 55666674 44
Q ss_pred hHHHHHHHHHHHHHHcchhhh
Q 003530 744 ENLQRRAVWVVERILRTDDIA 764 (813)
Q Consensus 744 ~~~~~~a~~aL~~i~~~~~~~ 764 (813)
+++-+-+-..+++..+..++.
T Consensus 507 ddii~~~~~~~~r~~~~g~~~ 527 (550)
T KOG4224|consen 507 DDIIELLNDIVARDANNGEYE 527 (550)
T ss_pred hhHHHHHHHHHHHhccCCccc
Confidence 555555555556655554443
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-34 Score=286.10 Aligned_cols=364 Identities=19% Similarity=0.239 Sum_probs=323.6
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHHh
Q 003530 151 LIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIG 230 (813)
Q Consensus 151 ~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~ 230 (813)
...++..++.+.++.+++.|-.++++++... +++-.|++.++++.|+.-+..+..++|.+++.+|++|+..+++|.+|.
T Consensus 86 s~epvl~llqs~d~~Iq~aa~~alGnlAVn~-enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA 164 (550)
T KOG4224|consen 86 SNEPVLALLQSCDKCIQCAAGEALGNLAVNM-ENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIA 164 (550)
T ss_pred hhhHHHHHHhCcchhhhhhhhhhhccceecc-CCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhh
Confidence 3566777789999999999999999999876 899999999999999988888888999999999999999999999998
Q ss_pred hhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchh
Q 003530 231 SINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDV 310 (813)
Q Consensus 231 ~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~ 310 (813)
. .|++.+|+++-+ +.+..++.++.++|.|+....+|++.++.+|++|.||.++.+++.+++..+..++++++.+..+
T Consensus 165 ~-sGaL~pltrLak--skdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~ 241 (550)
T KOG4224|consen 165 R-SGALEPLTRLAK--SKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRA 241 (550)
T ss_pred h-ccchhhhHhhcc--cchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHH
Confidence 5 699999999777 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhh---HHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHH
Q 003530 311 KVLVARTV---GSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATIL 387 (813)
Q Consensus 311 ~~~i~~~g---i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L 387 (813)
+..+++.+ +|.|++++.+++++++-.|.-||+||+...+....++++|++|.++++|++.. .........++
T Consensus 242 Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~-----~plilasVaCI 316 (550)
T KOG4224|consen 242 RKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPM-----GPLILASVACI 316 (550)
T ss_pred HHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcc-----hhHHHHHHHHH
Confidence 99999986 69999999999999999999999999999999999999999999999998642 44555667788
Q ss_pred HHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCC-ChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHh
Q 003530 388 ANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNT-GPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQF 466 (813)
Q Consensus 388 ~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~l 466 (813)
+|++-++.+-. .+.+.|++.+||++|..+ ++++|.+|..+|++|+.+.. ..+..|+++|+++.|..+
T Consensus 317 rnisihplNe~---------lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse---~n~~~i~esgAi~kl~eL 384 (550)
T KOG4224|consen 317 RNISIHPLNEV---------LIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSE---HNVSVIRESGAIPKLIEL 384 (550)
T ss_pred hhcccccCccc---------ceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhh---hhhHHHhhcCchHHHHHH
Confidence 88988776443 578899999999999965 56699999999999998755 678889999999999999
Q ss_pred hhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHH
Q 003530 467 VEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTR 540 (813)
Q Consensus 467 L~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 540 (813)
+.++...+|.....++..|+.. +...+.+-.. |.++.|+.++.+.+. |++..|+.+|.|++.+-....+
T Consensus 385 ~lD~pvsvqseisac~a~Lal~--d~~k~~lld~-gi~~iLIp~t~s~s~--Ev~gNaAaAL~Nlss~v~~Yar 453 (550)
T KOG4224|consen 385 LLDGPVSVQSEISACIAQLALN--DNDKEALLDS-GIIPILIPWTGSESE--EVRGNAAAALINLSSDVEHYAR 453 (550)
T ss_pred HhcCChhHHHHHHHHHHHHHhc--cccHHHHhhc-CCcceeecccCccch--hhcccHHHHHHhhhhhhHHHHH
Confidence 9999999998877777777742 2333566666 999999999999885 9999999999999985555533
No 6
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=6.5e-34 Score=278.53 Aligned_cols=417 Identities=18% Similarity=0.203 Sum_probs=340.4
Q ss_pred hHHHHHHhcccCCCCHHHHHHHHHHHHhh-ccC-CccHHHHHHcCChHHHHHHHc-cCCHHHHHHHHHHHHHhcCCchhH
Q 003530 235 AILILVGMTSSKSENLLTVEKAEKTLANL-EKC-ENNVRQMAENGRLQPLLTQIL-EGPQETKLSLAAFLGDLALNSDVK 311 (813)
Q Consensus 235 ~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L-~~~-~~~~~~i~~~G~i~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~~ 311 (813)
-+|.|..-|. |++.+.+..|..-.+.+ +.. ..-...+.++|++|.+|++|. ....-.+..|+++|.|++.....+
T Consensus 72 elp~lt~~l~--SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~Q 149 (526)
T COG5064 72 ELPQLTQQLF--SDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQ 149 (526)
T ss_pred hhHHHHHHHh--hhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccc
Confidence 4677888777 78888888887777766 432 223567789999999999995 456678889999999999865433
Q ss_pred H-HHHhh-hHHHHHHHHhcCCHHHHHHHHHHHHHhhCC-cccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHH
Q 003530 312 V-LVART-VGSCLINIMKSGNMQAREAALKALNQISSC-EPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILA 388 (813)
Q Consensus 312 ~-~i~~~-gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~ 388 (813)
. .+.+. ++|.+++||.+++.++++.+++||+|++.. +.+|..+.+.|++.+++.+|.+.. .+..+.+++.|+|.
T Consensus 150 TkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~---~~ismlRn~TWtLS 226 (526)
T COG5064 150 TKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSA---IHISMLRNATWTLS 226 (526)
T ss_pred eEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhcc---chHHHHHHhHHHHH
Confidence 2 33344 499999999999999999999999999995 588999999999999999998653 34678889999999
Q ss_pred HHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhh
Q 003530 389 NVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVE 468 (813)
Q Consensus 389 nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~ 468 (813)
|||+....... . ..+. .+++.|.+|+.
T Consensus 227 NlcRGknP~P~-----------------------------w------------------~~is------qalpiL~KLiy 253 (526)
T COG5064 227 NLCRGKNPPPD-----------------------------W------------------SNIS------QALPILAKLIY 253 (526)
T ss_pred HhhCCCCCCCc-----------------------------h------------------HHHH------HHHHHHHHHHh
Confidence 99885432211 1 0111 13677778888
Q ss_pred CCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcH
Q 003530 469 APQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAF 548 (813)
Q Consensus 469 ~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v 548 (813)
+.++++...|+|++.+|++. +.+....+... |..+.||.+|.+++. .++..|...++|+..++...++.+...|++
T Consensus 254 s~D~evlvDA~WAiSYlsDg-~~E~i~avld~-g~~~RLvElLs~~sa--~iqtPalR~vGNIVTG~D~QTqviI~~G~L 329 (526)
T COG5064 254 SRDPEVLVDACWAISYLSDG-PNEKIQAVLDV-GIPGRLVELLSHESA--KIQTPALRSVGNIVTGSDDQTQVIINCGAL 329 (526)
T ss_pred hcCHHHHHHHHHHHHHhccC-cHHHHHHHHhc-CCcHHHHHHhcCccc--cccCHHHHhhcCeeecCccceehheecccH
Confidence 88888888999999999965 44445566666 899999999999986 899999999999999999999999999999
Q ss_pred HHHHHHhhhhccccccCCccchhhhHhHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHHhcCCchHHHHHHHHHHhh
Q 003530 549 GLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALEN 628 (813)
Q Consensus 549 ~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~ 628 (813)
+.+..+|.+. ++.+.+.+++++.++|.+ +.+..+.+.+++.+|.|+.+|.+. +..+|+.|+||+.|
T Consensus 330 ~a~~~lLs~~----------ke~irKEaCWTiSNITAG---nteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisN 395 (526)
T COG5064 330 KAFRSLLSSP----------KENIRKEACWTISNITAG---NTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISN 395 (526)
T ss_pred HHHHHHhcCh----------hhhhhhhhheeecccccC---CHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 9999999873 356788999999999987 888889999999999999999999 99999999999999
Q ss_pred hccccccccCCCCCCCCCCCcccccccccCCCCCCCCcccccccCccccchhhhccchHHHHHhhccCchhHHHHHHHHH
Q 003530 629 LSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAAL 708 (813)
Q Consensus 629 ls~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gai~~Lv~lL~~~~~~v~~~A~~AL 708 (813)
.+.++.+. +....++++.|+|.||+.+|+-.|..+.+.++.++
T Consensus 396 atsgg~~~-------------------------------------PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~ 438 (526)
T COG5064 396 ATSGGLNR-------------------------------------PDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAI 438 (526)
T ss_pred hhccccCC-------------------------------------chHHHHHHHccchhHHHHHHhccCccchhhhHHHH
Confidence 88765432 13344789999999999999999999999999999
Q ss_pred HhhhhcCcc--------hhhHHHHHHhhcCcHHHHHHHhhcCChHHHHHHHHHHHHHHcchhhhh
Q 003530 709 STVIDDGVD--------IEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAY 765 (813)
Q Consensus 709 ~~L~~~~~~--------~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~~a~~aL~~i~~~~~~~~ 765 (813)
.+++.-++- ...+...+.++||++.+..+- ++.+..+..+|...++++|..++..+
T Consensus 439 eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q-~s~n~~iy~KAYsIIe~fFgeeD~vd 502 (526)
T COG5064 439 ENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQ-DSVNRTIYDKAYSIIEKFFGEEDAVD 502 (526)
T ss_pred HHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhh-hccccHHHHHHHHHHHHHcccchhhh
Confidence 998865442 234567778899999998887 69999999999999999996654443
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.1e-29 Score=266.14 Aligned_cols=415 Identities=16% Similarity=0.199 Sum_probs=342.0
Q ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHhhccCCcc--HHHHHHcCChHHHHHHHcc-CCHHHHHHHHHHHHHhcCCc-hhH
Q 003530 236 ILILVGMTSSKSENLLTVEKAEKTLANLEKCENN--VRQMAENGRLQPLLTQILE-GPQETKLSLAAFLGDLALNS-DVK 311 (813)
Q Consensus 236 i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~--~~~i~~~G~i~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~-~~~ 311 (813)
.+.++..+. ++++..+..+...++.|-..+.+ .......|.||.+|+.|.. .++.++..|+++|.|++... +.-
T Consensus 68 ~~~~~~~~~--S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T 145 (514)
T KOG0166|consen 68 LELMLAALY--SDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQT 145 (514)
T ss_pred hHHHHHHHh--CCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhc
Confidence 556677777 78888899999999988544333 4455566999999999974 46999999999999999954 444
Q ss_pred HHHHhhh-HHHHHHHHhcCCHHHHHHHHHHHHHhhCC-cccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHH
Q 003530 312 VLVARTV-GSCLINIMKSGNMQAREAALKALNQISSC-EPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILAN 389 (813)
Q Consensus 312 ~~i~~~g-i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~n 389 (813)
..+.+.| +|.+++++.+++..+++.|++||+|++.+ +..|..+++.|++++|+.++.... .....+.++|+|.|
T Consensus 146 ~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~----~~~~lRn~tW~LsN 221 (514)
T KOG0166|consen 146 KVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSD----KLSMLRNATWTLSN 221 (514)
T ss_pred cccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcccc----chHHHHHHHHHHHH
Confidence 4555555 89999999999999999999999999995 689999999999999999998753 35789999999999
Q ss_pred HHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhC
Q 003530 390 VVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEA 469 (813)
Q Consensus 390 L~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~ 469 (813)
||++...... .-.-..++|.|..+|.+.++++...|++++..|+.++. +....+.+.|.++.|+.+|.+
T Consensus 222 lcrgk~P~P~--------~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~n---e~iq~vi~~gvv~~LV~lL~~ 290 (514)
T KOG0166|consen 222 LCRGKNPSPP--------FDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSN---EKIQMVIDAGVVPRLVDLLGH 290 (514)
T ss_pred HHcCCCCCCc--------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh---HHHHHHHHccchHHHHHHHcC
Confidence 9998753322 12336789999999999999999999999999998876 566778899999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHH
Q 003530 470 PQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFG 549 (813)
Q Consensus 470 ~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~ 549 (813)
++..++..|++++.|+..+. +...+.+... |+++.|-.++..+.. ..++..|+|+|+|++.++.+..++++++|.+|
T Consensus 291 ~~~~v~~PaLRaiGNIvtG~-d~QTq~vi~~-~~L~~l~~ll~~s~~-~~ikkEAcW~iSNItAG~~~qiqaVida~l~p 367 (514)
T KOG0166|consen 291 SSPKVVTPALRAIGNIVTGS-DEQTQVVINS-GALPVLSNLLSSSPK-ESIKKEACWTISNITAGNQEQIQAVIDANLIP 367 (514)
T ss_pred CCcccccHHHhhccceeecc-HHHHHHHHhc-ChHHHHHHHhccCcc-hhHHHHHHHHHHHhhcCCHHHHHHHHHcccHH
Confidence 99999999999999988643 3444555555 899999999995553 36999999999999999999999999999999
Q ss_pred HHHHHhhhhccccccCCccchhhhHhHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHHhcCCchHHHHHHHHHHhhh
Q 003530 550 LIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENL 629 (813)
Q Consensus 550 ~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~l 629 (813)
.|+.+|... .-.++..|++++.|++.+ .+++....+.+.|+|+.|+.+|.-. +..+-..+-.+|.++
T Consensus 368 ~Li~~l~~~----------ef~~rKEAawaIsN~ts~--g~~~qi~yLv~~giI~plcdlL~~~-D~~ii~v~Ld~l~ni 434 (514)
T KOG0166|consen 368 VLINLLQTA----------EFDIRKEAAWAISNLTSS--GTPEQIKYLVEQGIIKPLCDLLTCP-DVKIILVALDGLENI 434 (514)
T ss_pred HHHHHHhcc----------chHHHHHHHHHHHhhccc--CCHHHHHHHHHcCCchhhhhcccCC-ChHHHHHHHHHHHHH
Confidence 999999872 356789999999999988 6899999999999999999999666 777777788888888
Q ss_pred ccccccccCCCCCCCCCCCcccccccccCCCCCCCCcccccccCccccchhhhccchHHHHHhhccCchhHHHHHHHHHH
Q 003530 630 SLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALS 709 (813)
Q Consensus 630 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gai~~Lv~lL~~~~~~v~~~A~~AL~ 709 (813)
-.......... + ..-.+.+-++|++.++=.|=.+++.++-..|..-+.
T Consensus 435 l~~~e~~~~~~-----------------------------~---n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~ 482 (514)
T KOG0166|consen 435 LKVGEAEKNRG-----------------------------T---NPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIID 482 (514)
T ss_pred HHHHHHhcccc-----------------------------c---cHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHH
Confidence 66544321110 0 012234668999999888888999999999998888
Q ss_pred hhhhcC
Q 003530 710 TVIDDG 715 (813)
Q Consensus 710 ~L~~~~ 715 (813)
+...++
T Consensus 483 ~yf~~e 488 (514)
T KOG0166|consen 483 TYFSEE 488 (514)
T ss_pred HhcCCC
Confidence 776554
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.96 E-value=3.8e-27 Score=231.20 Aligned_cols=385 Identities=15% Similarity=0.156 Sum_probs=314.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhh-ccCcchhhhhhcCCCHHHHHHHhc-cCcHHHHHHHHHHHHHhhcCchhHhHH
Q 003530 152 IPMIIDMLKSSSRKVRCTALETLRIVV-EEDDDNKEILGQGDTVRTIVKFLS-HELSREREEAVSLLYELSKSEALCEKI 229 (813)
Q Consensus 152 i~~Lv~lL~s~~~~~~~~al~~L~~L~-~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~ls~~~~~~~~i 229 (813)
.|.|.+-|.|+|.+.+..|+.-++.+. .+...-...+.++|.+|.+|.+|. ....-.+-+|+|+|.|++.......++
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkv 152 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKV 152 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEE
Confidence 588888899999999999999888764 444345677889999999999995 444445789999999999988888888
Q ss_pred hhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCcc-HHHHHHcCChHHHHHHHccCC--HHHHHHHHHHHHHhcC
Q 003530 230 GSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENN-VRQMAENGRLQPLLTQILEGP--QETKLSLAAFLGDLAL 306 (813)
Q Consensus 230 ~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~-~~~i~~~G~i~~Lv~lL~~~~--~~~~~~a~~~L~~L~~ 306 (813)
+...|++|.++.+|. +.+.++++.++++|.|++.+.+. +..+.++|++++++.+|.+.- .....++.++|.||+.
T Consensus 153 Vvd~~AVPlfiqlL~--s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcR 230 (526)
T COG5064 153 VVDAGAVPLFIQLLS--STEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR 230 (526)
T ss_pred EEeCCchHHHHHHHc--CchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhC
Confidence 888999999999999 89999999999999999987665 556779999999999998774 4788899999999998
Q ss_pred C--chhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCCc-ccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHH
Q 003530 307 N--SDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCE-PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVS 383 (813)
Q Consensus 307 ~--~~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a 383 (813)
. +.-........+|.|.+++.+.++++...|++|+..|+..+ +..+.+++.|..+.|+++|.+. +..++-.|
T Consensus 231 GknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~-----sa~iqtPa 305 (526)
T COG5064 231 GKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE-----SAKIQTPA 305 (526)
T ss_pred CCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc-----cccccCHH
Confidence 3 33333333445899999999999999999999999999866 7778899999999999999875 46778899
Q ss_pred HHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHH
Q 003530 384 ATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISL 463 (813)
Q Consensus 384 ~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~L 463 (813)
+....|+...++.... .+...|+++.|..+|.+....++..+++++.|++.++. +..+++.+...+++|
T Consensus 306 lR~vGNIVTG~D~QTq--------viI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnt---eqiqavid~nliPpL 374 (526)
T COG5064 306 LRSVGNIVTGSDDQTQ--------VIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNT---EQIQAVIDANLIPPL 374 (526)
T ss_pred HHhhcCeeecCcccee--------hheecccHHHHHHHhcChhhhhhhhhheeecccccCCH---HHHHHHHhcccchHH
Confidence 9999999888776554 67789999999999999999999999999999998876 677788999999999
Q ss_pred HHhhhCCChHHHHHHHHHHHHhCCCC--CHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCCC-------
Q 003530 464 VQFVEAPQNDLRLASIELIQNLSPHM--GHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPER------- 534 (813)
Q Consensus 464 v~lL~~~~~~v~~~A~~~L~~Ls~~~--~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~------- 534 (813)
+.+|...+-.++..|||++.|.+.+. ..++...+... |+|++|-.+|.-.++ .+-..++-++-|+...
T Consensus 375 i~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~q-G~IkpLc~~L~~~dN--kiiev~LD~~eniLk~Ge~d~~~ 451 (526)
T COG5064 375 IHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQ-GFIKPLCDLLDVVDN--KIIEVALDAIENILKVGEQDRLR 451 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHc-cchhHHHHHHhccCc--cchhhhHHHHHHHHhhhhHHHHh
Confidence 99999999999999999999998432 33555666666 999999999988776 4444445555554321
Q ss_pred ---CH-HHHHHHHhcCcHHHHHHHhhh
Q 003530 535 ---DL-GLTRQMLDEGAFGLIFSRVKS 557 (813)
Q Consensus 535 ---~~-~~~~~l~~~g~v~~L~~lL~~ 557 (813)
+. .....+-++|++..+..+-.+
T Consensus 452 ~~~nin~ya~~vE~Aggmd~I~~~Q~s 478 (526)
T COG5064 452 YGKNINIYAVYVEKAGGMDAIHGLQDS 478 (526)
T ss_pred ccCCccHHHHHHHhcccHHHHHHhhhc
Confidence 11 223344457887777766443
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.95 E-value=7.5e-25 Score=247.19 Aligned_cols=505 Identities=17% Similarity=0.212 Sum_probs=372.1
Q ss_pred cHHHHHHHHHHHhhcCCcccccccccCcHHHHHHHhcC---CCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHH
Q 003530 124 DIMPALKYVQYFCQSSRSNKHVVHNSELIPMIIDMLKS---SSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKF 200 (813)
Q Consensus 124 ~~~~al~~l~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s---~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~l 200 (813)
+..++...|-.+++..+.-...+.+.-++..|.+.|+. .+.++...-+.++..++... +....+.....-...+++
T Consensus 138 ek~~~~~~il~La~~~~NL~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS~f~-~fH~~l~~~kiG~l~m~i 216 (708)
T PF05804_consen 138 EKIRGTSLILQLARNPENLEELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFSNFS-QFHPILAHYKIGSLCMEI 216 (708)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHH-HHHHHHHhccHHHHHHHH
Confidence 34455566666665433322333334556667777743 34556666666666666554 344455544433333444
Q ss_pred hccCcHHHHHHHHHH--HHH---hhc-CchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHH
Q 003530 201 LSHELSREREEAVSL--LYE---LSK-SEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMA 274 (813)
Q Consensus 201 L~~~~~~~~~~a~~~--L~~---ls~-~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~ 274 (813)
+.. +.++.-.|. +.. .+. .+..++.. ....+.+-.+++ ....+...+..+|.||+.+..+..+|+
T Consensus 217 ie~---Elkr~~~w~~~l~~~~~~~~~~~~~~~~~---~~~~kk~~~l~~---kQeqLlrv~~~lLlNLAed~~ve~kM~ 287 (708)
T PF05804_consen 217 IEH---ELKRHDLWQEELRKKKKAAEEKPEAKKDY---EKELKKLQTLIR---KQEQLLRVAFYLLLNLAEDPRVELKMV 287 (708)
T ss_pred HHH---HHHHHHHHHHHHHhhhhhhccchhhhhhH---HHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 443 222222221 111 111 11111111 112344444554 344556678889999999999999999
Q ss_pred HcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhHHHHHhhh-HHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHH
Q 003530 275 ENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTV-GSCLINIMKSGNMQAREAALKALNQISSCEPSAKV 353 (813)
Q Consensus 275 ~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g-i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~ 353 (813)
+.|+|+.|+++|.+++.++...++.+|.+|+...+||..|.+.| +++|++++.+++.+++..++++|.|||.+++.|..
T Consensus 288 ~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~ 367 (708)
T PF05804_consen 288 NKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQ 367 (708)
T ss_pred hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 99999999999999999999999999999999999999999998 79999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhc-CCChHHHHH
Q 003530 354 LIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS-NTGPTIECK 432 (813)
Q Consensus 354 i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~-~~~~~~~~~ 432 (813)
|++.|++|.|+.+|.. +..+..|+.+|.+|+..+..+. .+...++++.+++++. .+.+.+...
T Consensus 368 mV~~GlIPkLv~LL~d-------~~~~~val~iLy~LS~dd~~r~---------~f~~TdcIp~L~~~Ll~~~~~~v~~e 431 (708)
T PF05804_consen 368 MVSLGLIPKLVELLKD-------PNFREVALKILYNLSMDDEARS---------MFAYTDCIPQLMQMLLENSEEEVQLE 431 (708)
T ss_pred HHHCCCcHHHHHHhCC-------CchHHHHHHHHHHhccCHhhHH---------HHhhcchHHHHHHHHHhCCCccccHH
Confidence 9999999999999985 4567789999999998765443 4666789999999876 456777778
Q ss_pred HHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhh
Q 003530 433 LLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVIS 512 (813)
Q Consensus 433 a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~ 512 (813)
++..+.||+.++.. ...+.+.+|++.|+...-...+.+ ..++++|+|.+.+.. ...+. +.+..|++++.
T Consensus 432 liaL~iNLa~~~rn----aqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~-k~~f~---~~i~~L~~~v~ 500 (708)
T PF05804_consen 432 LIALLINLALNKRN----AQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPL-KELFV---DFIGDLAKIVS 500 (708)
T ss_pred HHHHHHHHhcCHHH----HHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchH-HHHHH---HHHHHHHHHhh
Confidence 88999999999763 345667899999998776554433 346899999776443 23332 58999999999
Q ss_pred cCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhhhccccccCCccchhhhHhHHHHHHHHhccCCCChH
Q 003530 513 ENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPD 592 (813)
Q Consensus 513 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~~ 592 (813)
.+++ .+....+.++|+||+..+....+.+.+.+.+|+|.++|.... ..+++.-.++-.+..++ .|+.
T Consensus 501 ~~~~-ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~--------~~dDl~LE~Vi~~gtla----~d~~ 567 (708)
T PF05804_consen 501 SGDS-EEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGA--------SEDDLLLEVVILLGTLA----SDPE 567 (708)
T ss_pred cCCc-HHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCC--------CChHHHHHHHHHHHHHH----CCHH
Confidence 8875 789999999999999878888888889999999999997521 23455556666677666 5999
Q ss_pred HHHHHHHcCchHHHHHHHhcCC-chHHHHHHHHHHhhhccccccccCCCCCCCCCCCcccccccccCCCCCCCCcccccc
Q 003530 593 AIALCCEHNLAALFIELLQSNG-LDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGL 671 (813)
Q Consensus 593 ~~~~~~~~~~i~~L~~lL~~~~-~~~vk~~Aa~aL~~ls~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (813)
+...+.+.|+++.|+++|+... +++.......++.++-.+....
T Consensus 568 ~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr----------------------------------- 612 (708)
T PF05804_consen 568 CAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETR----------------------------------- 612 (708)
T ss_pred HHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHH-----------------------------------
Confidence 9999999999999999998753 5677777888887776553211
Q ss_pred cCccccchhhhccchHHHHHhhccCchhHHHHHHHHHHhhhhcCcch
Q 003530 672 CSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDI 718 (813)
Q Consensus 672 ~~~~~~~~l~~~gai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~ 718 (813)
.+-+-+.+++.-|++++.+.|++||..+-.+|--++..+.+|
T Consensus 613 -----~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w 654 (708)
T PF05804_consen 613 -----EVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEW 654 (708)
T ss_pred -----HHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHH
Confidence 011234678899999999999999999999999988665533
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.94 E-value=9.5e-23 Score=230.24 Aligned_cols=516 Identities=16% Similarity=0.192 Sum_probs=391.1
Q ss_pred CCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhccc-CCCCHHHHHHHHHHHHhhccCCccH
Q 003530 192 DTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSS-KSENLLTVEKAEKTLANLEKCENNV 270 (813)
Q Consensus 192 g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~-~s~~~~~~~~a~~~L~~L~~~~~~~ 270 (813)
+-+...+.+|=.+ ...+..++..|..|+.++++-+.++..+-.+.+|.+.|+. ...+.++..+.+.+.+.+|...+..
T Consensus 123 ~~~d~yiE~lYe~-~~ek~~~~~~il~La~~~~NL~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS~f~~fH 201 (708)
T PF05804_consen 123 NDLDEYIELLYED-IPEKIRGTSLILQLARNPENLEELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFSNFSQFH 201 (708)
T ss_pred HHHHHHHHHHhcc-cHHHHHHHHHHHHHhCCcchHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHH
Confidence 3466667777644 4667788899999999999999999888899999999963 2346778888888888888888777
Q ss_pred HHHHHcCChHHHHHHHccCCHHHHHHHHHH--H---HHhcC-CchhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 003530 271 RQMAENGRLQPLLTQILEGPQETKLSLAAF--L---GDLAL-NSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQI 344 (813)
Q Consensus 271 ~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~--L---~~L~~-~~~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~L 344 (813)
..+....+-...++++.. +++..-.+. + ...+. .+..+....+ ..+.+-.+++. ...+...+...|.||
T Consensus 202 ~~l~~~kiG~l~m~iie~---Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~-~~kk~~~l~~k-QeqLlrv~~~lLlNL 276 (708)
T PF05804_consen 202 PILAHYKIGSLCMEIIEH---ELKRHDLWQEELRKKKKAAEEKPEAKKDYEK-ELKKLQTLIRK-QEQLLRVAFYLLLNL 276 (708)
T ss_pred HHHHhccHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhhccchhhhhhHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 766665433444455432 233322211 1 11111 1112221111 12333344432 445667889999999
Q ss_pred hCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcC
Q 003530 345 SSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISN 424 (813)
Q Consensus 345 s~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~ 424 (813)
+.++.+...|.+.|+|+.|+++|.+. +.++...++..|.+|+-..+++.. +...|+|+.|++++.+
T Consensus 277 Aed~~ve~kM~~~~iV~~Lv~~Ldr~-----n~ellil~v~fLkkLSi~~ENK~~---------m~~~giV~kL~kLl~s 342 (708)
T PF05804_consen 277 AEDPRVELKMVNKGIVSLLVKCLDRE-----NEELLILAVTFLKKLSIFKENKDE---------MAESGIVEKLLKLLPS 342 (708)
T ss_pred hcChHHHHHHHhcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHcCCHHHHHH---------HHHcCCHHHHHHHhcC
Confidence 99999999999999999999999875 478999999999999988776653 6778999999999999
Q ss_pred CChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccH
Q 003530 425 TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQL 504 (813)
Q Consensus 425 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i 504 (813)
.+..++..++++|.||+.++. ++..+.+.|.++.|+.+|.++ ..+..+..+|.+||.. ++....+..+ +++
T Consensus 343 ~~~~l~~~aLrlL~NLSfd~~----~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~d--d~~r~~f~~T-dcI 413 (708)
T PF05804_consen 343 ENEDLVNVALRLLFNLSFDPE----LRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMD--DEARSMFAYT-DCI 413 (708)
T ss_pred CCHHHHHHHHHHHHHhCcCHH----HHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccC--HhhHHHHhhc-chH
Confidence 999999999999999999874 688899999999999999864 4666789999999953 3344566666 899
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhhhccccccCCccchhhhHhHHHHHHHHh
Q 003530 505 GSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVT 584 (813)
Q Consensus 505 ~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~ 584 (813)
+.|++++-+.+. .++...++.++.||+. ++.+.+.+.+.|+++.|+...-.. ... -.+..+.|++
T Consensus 414 p~L~~~Ll~~~~-~~v~~eliaL~iNLa~-~~rnaqlm~~g~gL~~L~~ra~~~----------~D~---lLlKlIRNiS 478 (708)
T PF05804_consen 414 PQLMQMLLENSE-EEVQLELIALLINLAL-NKRNAQLMCEGNGLQSLMKRALKT----------RDP---LLLKLIRNIS 478 (708)
T ss_pred HHHHHHHHhCCC-ccccHHHHHHHHHHhc-CHHHHHHHHhcCcHHHHHHHHHhc----------ccH---HHHHHHHHHH
Confidence 999998877654 4677788899999999 778889999999999999876541 122 2456788888
Q ss_pred ccCCCChHHHHHHHHcCchHHHHHHHhcCCchHHHHHHHHHHhhhccccccccCCCCCCCCCCCcccccccccCCCCCCC
Q 003530 585 FVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGL 664 (813)
Q Consensus 585 ~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~ls~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (813)
.. ++..+..+. +.+.-|+.++..+.++.....+..+|+||+..+.+-
T Consensus 479 ~h---~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~---------------------------- 525 (708)
T PF05804_consen 479 QH---DGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDW---------------------------- 525 (708)
T ss_pred hc---CchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCH----------------------------
Confidence 54 445555444 466777777777657888888999999887543211
Q ss_pred CcccccccCccccchhhhccchHHHHHhhcc--CchhHHHHHHHHHHhhhhcCcchhhHHHHHHhhcCcHHHHHHHhhc-
Q 003530 665 CRLHRGLCSLKETFCLLEGHAVEKLIALLDH--TNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEK- 741 (813)
Q Consensus 665 ~~~~~~~~~~~~~~~l~~~gai~~Lv~lL~~--~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~~~~~v~~L~~ll~~~- 741 (813)
..-+-+.+.+|-|.++|.. .++++...++..+++++.|+. .+..++++|-++.|+++|...
T Consensus 526 ------------~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~----~A~lL~~sgli~~Li~LL~~kq 589 (708)
T PF05804_consen 526 ------------AQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPE----CAPLLAKSGLIPTLIELLNAKQ 589 (708)
T ss_pred ------------HHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHH----HHHHHHhCChHHHHHHHHHhhC
Confidence 0112246789999999974 456788889999999998864 667888999999999999633
Q ss_pred CChHHHHHHHHHHHHHHcchhhhhhhcCCCcchHHHHHHhhhcCchhHHHHHHHHHHhc
Q 003530 742 RTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHID 800 (813)
Q Consensus 742 ~~~~~~~~a~~aL~~i~~~~~~~~~~~~~~~~~~~Lv~~l~~~~~~~~~~Aa~~L~~l~ 800 (813)
.|+++--+.++++.++..+++.+..+....+++.-|++++++.|+.+|+.+-.+|-=+.
T Consensus 590 eDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~ 648 (708)
T PF05804_consen 590 EDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIA 648 (708)
T ss_pred chHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 46788899999999999999999888777778899999999999999999998886544
No 11
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.90 E-value=1.4e-21 Score=214.75 Aligned_cols=359 Identities=16% Similarity=0.156 Sum_probs=293.7
Q ss_pred CHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhcc---CCcc
Q 003530 193 TVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEK---CENN 269 (813)
Q Consensus 193 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~---~~~~ 269 (813)
-+|..+.+|.+.++..+.+|+..|.+++..+...+.-++.-|+|+.||.+|. +.+.+++.+|+++|+||.. .++|
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~--~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLD--HRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhc--CCcHHHHHHHHHHHHhhhcccCCccc
Confidence 4788999999999999999999999999766544444467899999999999 8999999999999999954 4468
Q ss_pred HHHHHHcCChHHHHHHHcc-CCHHHHHHHHHHHHHhcCCchhHHHHHhhhHHHHHHHHhcC--------------CHHHH
Q 003530 270 VRQMAENGRLQPLLTQILE-GPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSG--------------NMQAR 334 (813)
Q Consensus 270 ~~~i~~~G~i~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~gi~~Lv~lL~~~--------------~~~~~ 334 (813)
+..|.+.++|+.++.+|+. .|.++++....+||||+.++..|..|...++..|...+-.+ ...+-
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence 9999999999999999996 79999999999999999999999999999888888765322 13567
Q ss_pred HHHHHHHHHhhC-CcccHHHHHH-cCChHHHHHHHhc-cCCCCCChhHHHHHHHHHHHHHhcCCC---------------
Q 003530 335 EAALKALNQISS-CEPSAKVLIH-AGILPPLVKDLFT-VGSNHLPMRLKEVSATILANVVNSGHD--------------- 396 (813)
Q Consensus 335 ~~a~~aL~~Ls~-~~~~~~~i~~-~g~i~~Lv~lL~~-~~~~~~~~~~~~~a~~~L~nL~~~~~~--------------- 396 (813)
.++.++|+|++. ..+.|+.|.+ .|.|..|+..+++ ....+.+....|+|+.+|.||+-.-..
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 899999999999 6688888886 6889999999883 223356788899999999999743320
Q ss_pred ------------------------------CcccccCCCCccccchhhHHHHHHhhc-CCChHHHHHHHHHHHHcccCC-
Q 003530 397 ------------------------------FDSITVGPDNQTLVSEDIVHNLLHLIS-NTGPTIECKLLQVLVGLTSSP- 444 (813)
Q Consensus 397 ------------------------------~~~~~~~~~~~~l~~~~~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~- 444 (813)
.+.-..++....++...+|..-+.+|. +.++.+.+.++.+|-||+...
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 000011222245677778888777776 678899999999999998763
Q ss_pred CchHHHHHHH-HhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCC----ChH
Q 003530 445 TTVLSVVSAI-KSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVG----ISK 519 (813)
Q Consensus 445 ~~~~~~~~~i-~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~----~~~ 519 (813)
.....++..+ +.+.|.++|++||+.+++++...++.+|+||+.+... .+.|. . ++++.||+.|..+.+ .++
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rn--k~lig-k-~a~~~lv~~Lp~~~~~~~~sed 627 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRN--KELIG-K-YAIPDLVRCLPGSGPSTSLSED 627 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchh--hhhhh-c-chHHHHHHhCcCCCCCcCchHH
Confidence 3334556666 8899999999999999999999999999999964432 35555 4 799999999988765 357
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhh
Q 003530 520 EQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKS 557 (813)
Q Consensus 520 ~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~ 557 (813)
+...++.+|.|+...+..+.+.+.+.++++.|+.+..+
T Consensus 628 tv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s 665 (717)
T KOG1048|consen 628 TVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKS 665 (717)
T ss_pred HHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcc
Confidence 78889999999998899999999999999999988765
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.87 E-value=1.5e-20 Score=206.84 Aligned_cols=414 Identities=17% Similarity=0.172 Sum_probs=301.6
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHHHhcC-CchhHHHHHhhh-HHHHHHHHhcCCHHHHHHHHHHHHHhhCCc---ccH
Q 003530 277 GRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTV-GSCLINIMKSGNMQAREAALKALNQISSCE---PSA 351 (813)
Q Consensus 277 G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~g-i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~---~~~ 351 (813)
--+|..+.+|.+.++.++.+++..|..++. +++.|..+.+.| |+.||.+|.+.+.+++.+|++||.||.... +|+
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 346788899999999999999999999999 556888888875 999999999999999999999999999842 589
Q ss_pred HHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcC-------
Q 003530 352 KVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISN------- 424 (813)
Q Consensus 352 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~------- 424 (813)
-.+.+.++|+.++++|+... +.++++..+++||||++++.-+. ......++.|-.-+-.
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~----D~ev~e~iTg~LWNLSS~D~lK~----------~ii~~al~tLt~~vI~P~Sgw~~ 378 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQ----DDEVRELITGILWNLSSNDALKM----------LIITSALSTLTDNVIIPHSGWEE 378 (717)
T ss_pred hhhhhcCChHHHHHHHHhhc----chHHHHHHHHHHhcccchhHHHH----------HHHHHHHHHHHHhhcccccccCC
Confidence 99999999999999999743 58999999999999998743221 2224455555553321
Q ss_pred -------CChHHHHHHHHHHHHcccCCCchHHHHHHHHhc-CCHHHHHHhhhC------CChHHHHHHHHHHHHhCCCCC
Q 003530 425 -------TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSS-GATISLVQFVEA------PQNDLRLASIELIQNLSPHMG 490 (813)
Q Consensus 425 -------~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~-g~i~~Lv~lL~~------~~~~v~~~A~~~L~~Ls~~~~ 490 (813)
.+..+-.++..+|.|+++... +.++.++++ |.|+.|+..++. .+.+..++++.+|+||+....
T Consensus 379 ~~~~~~~~~~~vf~n~tgcLRNlSs~~~---eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~ 455 (717)
T KOG1048|consen 379 EPAPRKAEDSTVFRNVTGCLRNLSSAGQ---EAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLE 455 (717)
T ss_pred CCcccccccceeeehhhhhhccccchhH---HHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhh
Confidence 124566789999999988655 667777775 678888887773 344667899999999996544
Q ss_pred HHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhc-------------CCC--CCHHHHHHHHhcCcHHHHHHHh
Q 003530 491 HELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAE-------------LPE--RDLGLTRQMLDEGAFGLIFSRV 555 (813)
Q Consensus 491 ~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~-------------L~~--~~~~~~~~l~~~g~v~~L~~lL 555 (813)
.++-...... +...-........ ...+++... ++. .++.--+.++...+|.....+|
T Consensus 456 ~Evp~~~~~~---~~~~~~~~~~~~~-----~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll 527 (717)
T KOG1048|consen 456 AEVPPKYRQV---LANIARLPGVGPP-----AESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLL 527 (717)
T ss_pred hhcCHhhhhH---hhcccccccCCCc-----ccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHH
Confidence 3321111100 0000000000000 000111100 000 0111124567777888878887
Q ss_pred hhhccccccCCccchhhhHhHHHHHHHHhccCCCCh-HHHHH-HHHcCchHHHHHHHhcCCchHHHHHHHHHHhhhcccc
Q 003530 556 KSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEP-DAIAL-CCEHNLAALFIELLQSNGLDKVQMVSATALENLSLES 633 (813)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~-~~~~~-~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~ls~~~ 633 (813)
... ....+.|+++|+|.+++...+.-. ..+.. +.++.+.|.|++||+.+ ++.+.+.+|.+|.||+.+.
T Consensus 528 ~~s---------~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d~ 597 (717)
T KOG1048|consen 528 ALS---------KNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRDI 597 (717)
T ss_pred HHh---------cchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccCc
Confidence 742 246789999999999998732111 22333 48899999999999999 9999999999999999875
Q ss_pred ccccCCCCCCCCCCCcccccccccCCCCCCCCcccccccCccccchhhhccchHHHHHhhccCc------hhHHHHHHHH
Q 003530 634 KNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTN------EKVVEASLAA 707 (813)
Q Consensus 634 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gai~~Lv~lL~~~~------~~v~~~A~~A 707 (813)
.+.. ++..++++.||++|.+.. +++..+++.+
T Consensus 598 rnk~------------------------------------------ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~t 635 (717)
T KOG1048|consen 598 RNKE------------------------------------------LIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHT 635 (717)
T ss_pred hhhh------------------------------------------hhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHh
Confidence 4332 234669999999998533 6899999999
Q ss_pred HHhhhhcCcchhhHHHHHHhhcCcHHHHHHHhhcCChHHHHHHHHHHHHHHcchhhhhhhcCC
Q 003530 708 LSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGD 770 (813)
Q Consensus 708 L~~L~~~~~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~~a~~aL~~i~~~~~~~~~~~~~ 770 (813)
|.++..++. .++..+.+.+|+++|+.+.....++..-+.|.-.|..++...+++..+-.+
T Consensus 636 l~niv~~~~---~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eLh~~~kk~ 695 (717)
T KOG1048|consen 636 LNNIVRKNV---LNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKELHFKLKKK 695 (717)
T ss_pred HHHHHHHhH---HHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhhhHhhh
Confidence 999997755 478889999999999998875566788888899999999998888766543
No 13
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.81 E-value=1.6e-20 Score=151.04 Aligned_cols=72 Identities=47% Similarity=0.898 Sum_probs=61.3
Q ss_pred CCCceecccccccCCCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCcccHhhHHHHHHHHHhhh
Q 003530 29 IYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNPSIALRNTIEEWNARNE 105 (813)
Q Consensus 29 ~~~~~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~~~~~~~ 105 (813)
+|++|+||||+++|+|||++++||||||.+|++|+.. +. .+||+|++++...++.||..||+.|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~----~~-~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQ----NG-GTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCT----TS-SB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHc----CC-CCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 4789999999999999999999999999999999985 44 899999999998999999999999999998864
No 14
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=2.3e-16 Score=155.77 Aligned_cols=339 Identities=12% Similarity=0.165 Sum_probs=272.3
Q ss_pred HHHHHHHHHhhcCCcccccccccCcHHHHHHHh---cCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhcc
Q 003530 127 PALKYVQYFCQSSRSNKHVVHNSELIPMIIDML---KSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSH 203 (813)
Q Consensus 127 ~al~~l~~l~~~~~~~r~~i~~~g~i~~Lv~lL---~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~ 203 (813)
+-+..+...|+.+...|..-.+.|..+.++..+ .+++..+..+++.+|..+....+ .+.++.+...++++|..
T Consensus 81 ~ll~~l~d~ck~~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qp----dl~da~g~~vvv~lL~~ 156 (461)
T KOG4199|consen 81 ELLEQLADECKKSLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQP----DLFDAEAMAVVLKLLAL 156 (461)
T ss_pred HHHHHHHHHHhhhHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCc----chhccccHHHHHHHHhc
Confidence 445556667788888888888899999888776 36788899999999998876554 46678889999999954
Q ss_pred --CcHHHHHHHHHHHHHhhc-CchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCc----------cH
Q 003530 204 --ELSREREEAVSLLYELSK-SEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCEN----------NV 270 (813)
Q Consensus 204 --~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~----------~~ 270 (813)
++.+........+..-+. ++.+|+.++ +.+.++.+...|.. .+..++.+.+.++++-|..+++ ..
T Consensus 157 ~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m-~~~il~Li~~~l~~-~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hA 234 (461)
T KOG4199|consen 157 KVESEEVTLLTLQWLQKACIMHEVNRQLFM-ELKILELILQVLNR-EGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHA 234 (461)
T ss_pred ccchHHHHHHHHHHHHHHHHHhHHHHHHHH-HhhHHHHHHHHHcc-cCccHHHHHHHHHHHHhcCCCceeeecchhhHHH
Confidence 455666777777776665 445666665 57999999977774 3444778888999999877664 34
Q ss_pred HHHHHcCChHHHHHHHccC-CHHHHHHHHHHHHHhcCCchhHHHHHhhh-HHHHHHHHhcCC----HHHHHHHHHHHHHh
Q 003530 271 RQMAENGRLQPLLTQILEG-PQETKLSLAAFLGDLALNSDVKVLVARTV-GSCLINIMKSGN----MQAREAALKALNQI 344 (813)
Q Consensus 271 ~~i~~~G~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~g-i~~Lv~lL~~~~----~~~~~~a~~aL~~L 344 (813)
+.|++.|++..|++.|+.+ ++++......+|..|+.+++.+..|.+.| +..|++++.+.+ ..+...++..|..|
T Consensus 235 r~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLral 314 (461)
T KOG4199|consen 235 RTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRAL 314 (461)
T ss_pred HHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHH
Confidence 6788889999999999876 78888999999999999999999999986 899999998733 33557888999999
Q ss_pred hCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcC
Q 003530 345 SSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISN 424 (813)
Q Consensus 345 s~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~ 424 (813)
+.++.++..+++.|+.+.++.++..+. .++.+.+.++.++.-|+-..+++.. .+.+.|+-...++-++.
T Consensus 315 AG~DsvKs~IV~~gg~~~ii~l~~~h~---~~p~Vi~~~~a~i~~l~LR~pdhsa--------~~ie~G~a~~avqAmka 383 (461)
T KOG4199|consen 315 AGSDSVKSTIVEKGGLDKIITLALRHS---DDPLVIQEVMAIISILCLRSPDHSA--------KAIEAGAADLAVQAMKA 383 (461)
T ss_pred hCCCchHHHHHHhcChHHHHHHHHHcC---CChHHHHHHHHHHHHHHhcCcchHH--------HHHhcchHHHHHHHHHh
Confidence 999999999999999999999998875 3588999999999999998887765 46667777777888873
Q ss_pred --CChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhC
Q 003530 425 --TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLS 486 (813)
Q Consensus 425 --~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls 486 (813)
....+|+++++.+.|+...+. +++..+ =..|++.|+..-...++..+..|-.+|+-|-
T Consensus 384 hP~~a~vQrnac~~IRNiv~rs~---~~~~~~-l~~GiE~Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 384 HPVAAQVQRNACNMIRNIVVRSA---ENRTIL-LANGIEKLIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhh---hccchH-HhccHHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 346799999999999987754 334433 3578999999999999999999999999886
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=2.8e-16 Score=155.20 Aligned_cols=305 Identities=16% Similarity=0.191 Sum_probs=253.5
Q ss_pred cccHHHHHHHHHHHhhcCCcccccccccCcHHHHHHHhc--CCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHH
Q 003530 122 ESDIMPALKYVQYFCQSSRSNKHVVHNSELIPMIIDMLK--SSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVK 199 (813)
Q Consensus 122 ~~~~~~al~~l~~l~~~~~~~r~~i~~~g~i~~Lv~lL~--s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~ 199 (813)
+.-..++|..|..+..+.|. +.++.+...++++|. .++.++....+..+..-|..++.||..+++.+..+.+..
T Consensus 121 ~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~ 196 (461)
T KOG4199|consen 121 ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQ 196 (461)
T ss_pred hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHH
Confidence 33445778888777766554 456778999999984 567889999999999999999999999999999999997
Q ss_pred Hhcc-CcHHHHHHHHHHHHHhhcCch----------hHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCc
Q 003530 200 FLSH-ELSREREEAVSLLYELSKSEA----------LCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCEN 268 (813)
Q Consensus 200 lL~~-~~~~~~~~a~~~L~~ls~~~~----------~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~ 268 (813)
.|.. +..++.+++.++++-|..+++ ..+.|++ .|++..|+..+.. .-+|++...+..+|..|+..++
T Consensus 197 ~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~-e~~l~~L~Eal~A-~~dp~~L~~l~~tl~~lAVr~E 274 (461)
T KOG4199|consen 197 VLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAK-EGILTALTEALQA-GIDPDSLVSLSTTLKALAVRDE 274 (461)
T ss_pred HHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHH-hhhHHHHHHHHHc-cCCccHHHHHHHHHHHHHHHHH
Confidence 7654 444578899999999988775 3466764 5789999999986 4568999999999999999999
Q ss_pred cHHHHHHcCChHHHHHHHccC-CHH---HHHHHHHHHHHhcCCchhHHHHHhhh-HHHHHHHHh--cCCHHHHHHHHHHH
Q 003530 269 NVRQMAENGRLQPLLTQILEG-PQE---TKLSLAAFLGDLALNSDVKVLVARTV-GSCLINIMK--SGNMQAREAALKAL 341 (813)
Q Consensus 269 ~~~~i~~~G~i~~Lv~lL~~~-~~~---~~~~a~~~L~~L~~~~~~~~~i~~~g-i~~Lv~lL~--~~~~~~~~~a~~aL 341 (813)
.+..|++.|+++.|+..+.+. ... +...++..|..|+.++++|..|++.| .+.++.++. +.++.+.+.++.++
T Consensus 275 ~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i 354 (461)
T KOG4199|consen 275 ICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAII 354 (461)
T ss_pred HHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHH
Confidence 999999999999999999884 333 44677889999999999999999986 688888773 47889999999999
Q ss_pred HHhhC-CcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHH
Q 003530 342 NQISS-CEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLH 420 (813)
Q Consensus 342 ~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~ 420 (813)
.-||. .|++...+++.|+-...++.|+.+. ....++++|++.++|++.++..... .+. ..+++.|+.
T Consensus 355 ~~l~LR~pdhsa~~ie~G~a~~avqAmkahP---~~a~vQrnac~~IRNiv~rs~~~~~--------~~l-~~GiE~Li~ 422 (461)
T KOG4199|consen 355 SILCLRSPDHSAKAIEAGAADLAVQAMKAHP---VAAQVQRNACNMIRNIVVRSAENRT--------ILL-ANGIEKLIR 422 (461)
T ss_pred HHHHhcCcchHHHHHhcchHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHhhhhccc--------hHH-hccHHHHHH
Confidence 99997 6899999999999999999999874 2367899999999999998876654 233 566899999
Q ss_pred hhcCCChHHHHHHHHHHHHcccCC
Q 003530 421 LISNTGPTIECKLLQVLVGLTSSP 444 (813)
Q Consensus 421 lL~~~~~~~~~~a~~~L~~L~~~~ 444 (813)
.-+..++.....+-.+|..|..+.
T Consensus 423 ~A~~~h~tce~~akaALRDLGc~v 446 (461)
T KOG4199|consen 423 TAKANHETCEAAAKAALRDLGCDV 446 (461)
T ss_pred HHHhcCccHHHHHHHHHHhcCcch
Confidence 888888888888888888887663
No 16
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.72 E-value=4.1e-16 Score=177.80 Aligned_cols=351 Identities=18% Similarity=0.208 Sum_probs=269.5
Q ss_pred HHHHHHHHHhhcCCcccccccccCcHHHHHHHhcC---CCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHh--
Q 003530 127 PALKYVQYFCQSSRSNKHVVHNSELIPMIIDMLKS---SSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFL-- 201 (813)
Q Consensus 127 ~al~~l~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s---~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL-- 201 (813)
+-.+.+.++.. +++.=..+...|.+|.|+++|.. ++.+.+..|-.+|.++...+++.++.=.+..+++.|-++.
T Consensus 213 e~ar~fLemSs-s~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraY 291 (2195)
T KOG2122|consen 213 EMARTFLEMSS-SPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAY 291 (2195)
T ss_pred HHHHHHHHhcc-CchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHH
Confidence 34444444433 33333556789999999999953 3578899999999999987766544433334444443222
Q ss_pred --------ccC--------cHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhccc----------CCCCHHHHHH
Q 003530 202 --------SHE--------LSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSS----------KSENLLTVEK 255 (813)
Q Consensus 202 --------~~~--------~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~----------~s~~~~~~~~ 255 (813)
..+ +..-...|+-+|..++.+++.|..+- +.|++..+-.|+.. ...+..++.+
T Consensus 292 C~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~-ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrY 370 (2195)
T KOG2122|consen 292 CETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMN-ELGGLQAIAELLQVDHEMHGPETNDGECNALRRY 370 (2195)
T ss_pred HHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHH-HhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 111 12224578889999999999999985 57988888887742 1123468999
Q ss_pred HHHHHHhhccCC-ccHHHHH-HcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCch--hHHHHHhhh-HHHHHHH-HhcC
Q 003530 256 AEKTLANLEKCE-NNVRQMA-ENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSD--VKVLVARTV-GSCLINI-MKSG 329 (813)
Q Consensus 256 a~~~L~~L~~~~-~~~~~i~-~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~--~~~~i~~~g-i~~Lv~l-L~~~ 329 (813)
|..+|-||...+ .|+..+. ..|.+..+|..|.+.++++..-.+.+|.||++..+ .|..+.+.| +..|+.. |+..
T Consensus 371 a~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~ 450 (2195)
T KOG2122|consen 371 AGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNK 450 (2195)
T ss_pred HHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhc
Confidence 999999997654 4677666 45999999999999999999999999999999543 577788888 8888774 4556
Q ss_pred CHHHHHHHHHHHHHhhCC-cccHHHHHH-cCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCc
Q 003530 330 NMQAREAALKALNQISSC-EPSAKVLIH-AGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQ 407 (813)
Q Consensus 330 ~~~~~~~a~~aL~~Ls~~-~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~ 407 (813)
++......+.|||||+.+ .+|+..|.. -|++.-||.+|...+. .....+.+.+-++|.|++..-...+. ..+
T Consensus 451 kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~q-s~tLaIIEsaGGILRNVSS~IAt~E~-----yRQ 524 (2195)
T KOG2122|consen 451 KESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQ-SNTLAIIESAGGILRNVSSLIATCED-----YRQ 524 (2195)
T ss_pred ccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCC-cchhhhhhcCccHHHHHHhHhhccch-----HHH
Confidence 667888999999999995 599999987 6789999999986532 12477889999999999875433322 234
Q ss_pred cccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCC
Q 003530 408 TLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSP 487 (813)
Q Consensus 408 ~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~ 487 (813)
++....++..|+.+|++.+-.+..+++.+||||..... +-++.+++.|++..|..|+++++..+-+.++.+|.||..
T Consensus 525 ILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p---~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 525 ILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSP---EDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLN 601 (2195)
T ss_pred HHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCH---HHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence 68888999999999999999999999999999976644 456779999999999999999999999999999999874
Q ss_pred C
Q 003530 488 H 488 (813)
Q Consensus 488 ~ 488 (813)
.
T Consensus 602 ~ 602 (2195)
T KOG2122|consen 602 F 602 (2195)
T ss_pred C
Confidence 3
No 17
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.72 E-value=1.4e-15 Score=173.57 Aligned_cols=367 Identities=15% Similarity=0.149 Sum_probs=283.1
Q ss_pred HHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccC---CHHHHHHHHHHHHHhcCC-chhHHH
Q 003530 238 ILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEG---PQETKLSLAAFLGDLALN-SDVKVL 313 (813)
Q Consensus 238 ~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~---~~~~~~~a~~~L~~L~~~-~~~~~~ 313 (813)
.|..++. ..|+ +..+..+..++.+++.+..|+..|.++.|+++|.-. +.+.+..+-.+|.|+... ++.+..
T Consensus 201 sllsml~--t~D~---ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~ 275 (2195)
T KOG2122|consen 201 SLLSMLG--TDDE---EEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRG 275 (2195)
T ss_pred HHhhhcc--cCCH---HHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhh
Confidence 5566665 3443 345667888999999999999999999999999765 457888899999999873 333222
Q ss_pred HHhhh-H----------HHHHHHHhcC-------CHHHH-HHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCC--
Q 003530 314 VARTV-G----------SCLINIMKSG-------NMQAR-EAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGS-- 372 (813)
Q Consensus 314 i~~~g-i----------~~Lv~lL~~~-------~~~~~-~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~-- 372 (813)
-.+.- + ..+..+|..+ ...-+ ..|+.+|..++...+.|..|.+.|++..+-+||+-...
T Consensus 276 RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mh 355 (2195)
T KOG2122|consen 276 RREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMH 355 (2195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 22211 1 2223334332 11223 38889999999999999999999999999888874311
Q ss_pred -----CCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCch
Q 003530 373 -----NHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTV 447 (813)
Q Consensus 373 -----~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~ 447 (813)
......++.++..+|.||.-.+...... .--..|+++.+|..|.+..+++.+-.+.+|.||......
T Consensus 356 gp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~-------LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~- 427 (2195)
T KOG2122|consen 356 GPETNDGECNALRRYAGMALTNLTFGDVANKAT-------LCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADS- 427 (2195)
T ss_pred CCCCCcHHHHHHHHHHHHHhhccccccccchhh-------hhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccc-
Confidence 1234678999999999998877654442 233478999999999999999999999999999988653
Q ss_pred HHHHHHHHhcCCHHHHHHh-hhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCC--ChHHHHHH
Q 003530 448 LSVVSAIKSSGATISLVQF-VEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVG--ISKEQAAA 524 (813)
Q Consensus 448 ~~~~~~i~~~g~i~~Lv~l-L~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~--~~~~~~~a 524 (813)
.+.+.+++.|.+..|+.. |+...+-.....+-+|.||+.|.....+ .|+...|++..||.+|.-... ...+...|
T Consensus 428 -nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA-~iCaVDGALaFLVg~LSY~~qs~tLaIIEsa 505 (2195)
T KOG2122|consen 428 -NMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKA-EICAVDGALAFLVGTLSYEGQSNTLAIIESA 505 (2195)
T ss_pred -cHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccch-hhhcccchHHHHHhhccccCCcchhhhhhcC
Confidence 567788888999998874 4555555566777899999977655543 444445999999999987743 34677789
Q ss_pred HHHHhcCC---CCCHHHHHHHHhcCcHHHHHHHhhhhccccccCCccchhhhHhHHHHHHHHhccCCCChHHHHHHHHcC
Q 003530 525 VGLLAELP---ERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHN 601 (813)
Q Consensus 525 ~~~L~~L~---~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~ 601 (813)
.+||.|.. ...+..++.+.+.+-+..|+..|++ ..-.++.+++|+|.|+... ++.-|+.+.++|
T Consensus 506 GGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS----------~SLTiVSNaCGTLWNLSAR---~p~DQq~LwD~g 572 (2195)
T KOG2122|consen 506 GGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKS----------HSLTIVSNACGTLWNLSAR---SPEDQQMLWDDG 572 (2195)
T ss_pred ccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhh----------cceEEeecchhhhhhhhcC---CHHHHHHHHhcc
Confidence 99998864 3567888999999999999999987 2345678999999999975 999999999999
Q ss_pred chHHHHHHHhcCCchHHHHHHHHHHhhhcccc
Q 003530 602 LAALFIELLQSNGLDKVQMVSATALENLSLES 633 (813)
Q Consensus 602 ~i~~L~~lL~~~~~~~vk~~Aa~aL~~ls~~~ 633 (813)
++++|..|+.+. +..+-+-+|.+|.||-.+.
T Consensus 573 Av~mLrnLIhSK-hkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 573 AVPMLRNLIHSK-HKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred cHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCC
Confidence 999999999999 8899999999999997766
No 18
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.67 E-value=2e-13 Score=153.86 Aligned_cols=380 Identities=15% Similarity=0.193 Sum_probs=285.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHHhhh
Q 003530 153 PMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIGSI 232 (813)
Q Consensus 153 ~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~ 232 (813)
+.+...|.+.+.+....++.+|..+.... ..... ..+..+.|...|.++++.+|..++..|.++..+.+....+...
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~ 117 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSAL-SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVD 117 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC
Confidence 34777788778887788888888876643 22222 5677899999999999999999999999999888776676667
Q ss_pred hchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcC-CchhH
Q 003530 233 NGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVK 311 (813)
Q Consensus 233 ~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~ 311 (813)
.+.++.++..+. +++.++...|+.+|.+++.++.+...+...+.+..|..++...+..+|..+..++.+++. +++..
T Consensus 118 ~~l~~~i~~~L~--~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 118 NELLPLIIQCLR--DPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred ccHHHHHHHHHc--CCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence 899999999999 899999999999999999998888888888899999999999888999999999999987 56677
Q ss_pred HHHHhhh-HHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHH-HHHHHHHHH
Q 003530 312 VLVARTV-GSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLK-EVSATILAN 389 (813)
Q Consensus 312 ~~i~~~g-i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~-~~a~~~L~n 389 (813)
..+.+.| ++.+++.|.+++.-++.+++..|..|+..+.+.+.+.+.|+++.|+.++.....+.....+. -..+....+
T Consensus 196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~ 275 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGN 275 (503)
T ss_pred HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHH
Confidence 7777778 69999999988888899999999999999999999999999999999998764221012222 233356667
Q ss_pred HHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCC----HHHHHH
Q 003530 390 VVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGA----TISLVQ 465 (813)
Q Consensus 390 L~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~----i~~Lv~ 465 (813)
++...+. .+ .-....++..+.+++.+.++..+..|..++..++....+.... .....+. +..+-.
T Consensus 276 la~~~~~--~v-------~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L--~~~~~~~~~~~l~~~~~ 344 (503)
T PF10508_consen 276 LARVSPQ--EV-------LELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLL--LQKQGPAMKHVLKAIGD 344 (503)
T ss_pred HHhcChH--HH-------HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHH--HhhcchHHHHHHHHHHH
Confidence 7664221 10 0112455666667777899999999999999999876542222 0111223 444455
Q ss_pred hhhCCChHHHHHHHHHHHHhC--CCC--CHHH-------HHHHhcccccHH-HHHHhhhcCCCChHHHHHHHHHHhcCCC
Q 003530 466 FVEAPQNDLRLASIELIQNLS--PHM--GHEL-------ADALRGAVGQLG-SLIRVISENVGISKEQAAAVGLLAELPE 533 (813)
Q Consensus 466 lL~~~~~~v~~~A~~~L~~Ls--~~~--~~~~-------~~~l~~~~g~i~-~Lv~ll~~~~~~~~~~~~a~~~L~~L~~ 533 (813)
...++..++|..+..++.++- ... .+++ .+.+.. +... .++.+++++=+ ++|.++..+|..+..
T Consensus 345 ~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~--~~~~~~l~~~~~qPF~--elr~a~~~~l~~l~~ 420 (503)
T PF10508_consen 345 AIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSG--SPLSNLLMSLLKQPFP--ELRCAAYRLLQALAA 420 (503)
T ss_pred HhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcC--CchHHHHHHHhcCCch--HHHHHHHHHHHHHhc
Confidence 666777799999999999983 211 1111 122222 3344 77888888865 999999999999998
Q ss_pred CCHHHHHHHHhcCcHHHHH
Q 003530 534 RDLGLTRQMLDEGAFGLIF 552 (813)
Q Consensus 534 ~~~~~~~~l~~~g~v~~L~ 552 (813)
..-.++......|.++.++
T Consensus 421 ~~Wg~~~i~~~~gfie~ll 439 (503)
T PF10508_consen 421 QPWGQREICSSPGFIEYLL 439 (503)
T ss_pred CHHHHHHHHhCccHHhhhc
Confidence 6655555444555555554
No 19
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.66 E-value=8.3e-14 Score=142.10 Aligned_cols=400 Identities=13% Similarity=0.105 Sum_probs=291.8
Q ss_pred ccCCCCcccHHHHHHHHHHHhhcCCcccccccccCcHHHHHHHhcC----CC---HHHHHHHHHHHHHhhccCcchhhhh
Q 003530 116 LNLGSSESDIMPALKYVQYFCQSSRSNKHVVHNSELIPMIIDMLKS----SS---RKVRCTALETLRIVVEEDDDNKEIL 188 (813)
Q Consensus 116 l~~~~~~~~~~~al~~l~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s----~~---~~~~~~al~~L~~L~~~~~~~~~~i 188 (813)
++++++.+-..+..+.+.+.|..+.++|..+.+.||-..+++.|+. ++ .+...-+...|.|...++++.+..+
T Consensus 95 ~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~ 174 (604)
T KOG4500|consen 95 TPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQV 174 (604)
T ss_pred CCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHH
Confidence 3444445555577888999999999999999999998888888853 22 3444456678889999999999999
Q ss_pred hcCCCHHHHHHHhcc--CcHHHHHHHHHHHHHhhcC-chhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhcc
Q 003530 189 GQGDTVRTIVKFLSH--ELSREREEAVSLLYELSKS-EALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEK 265 (813)
Q Consensus 189 ~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~ 265 (813)
.+.|.++.|...+.- .+....+.......+|... .++.............|++++.. ..++++.+-...+|...+.
T Consensus 175 ~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~-~v~~d~~eM~feila~~ae 253 (604)
T KOG4500|consen 175 ADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPS-MVREDIDEMIFEILAKAAE 253 (604)
T ss_pred HhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHH-hhccchhhHHHHHHHHHhc
Confidence 999999999988753 3334444444444444332 22222233344566677888874 5677888888899999999
Q ss_pred CCccHHHHHHcCChHHHHHHHccC-CH-------HHHHHHHHHHHHhcCCchhHHHHHhhh--HHHHHHHHhcCCHHHHH
Q 003530 266 CENNVRQMAENGRLQPLLTQILEG-PQ-------ETKLSLAAFLGDLALNSDVKVLVARTV--GSCLINIMKSGNMQARE 335 (813)
Q Consensus 266 ~~~~~~~i~~~G~i~~Lv~lL~~~-~~-------~~~~~a~~~L~~L~~~~~~~~~i~~~g--i~~Lv~lL~~~~~~~~~ 335 (813)
++.-+..+++.|.++.++.+++.- +- ..-..++....-|...++....+.+.+ +..++..+.+.+.....
T Consensus 254 nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t 333 (604)
T KOG4500|consen 254 NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLIT 333 (604)
T ss_pred CcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHH
Confidence 999999999999999999999872 11 122233444444455666666666665 58888999999999999
Q ss_pred HHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhH
Q 003530 336 AALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIV 415 (813)
Q Consensus 336 ~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v 415 (813)
.++-+++|+++.+.++..+++.|.+..|++.|......+.+.+.+..++++|+|+.-...++. .+...|++
T Consensus 334 ~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka---------~~~~aGvt 404 (604)
T KOG4500|consen 334 MGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKA---------HFAPAGVT 404 (604)
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchh---------hccccchH
Confidence 999999999999999999999999999999998754345567888899999999987666554 36778999
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHh-cCCHHHHHHhhhCCCh-HHHHHHHHHHHHhCCCC-CHH
Q 003530 416 HNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKS-SGATISLVQFVEAPQN-DLRLASIELIQNLSPHM-GHE 492 (813)
Q Consensus 416 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~-~v~~~A~~~L~~Ls~~~-~~~ 492 (813)
+.++..++...|.+..+...+|..+-...+ ...-.+.+ -.-+..|+...++++- .+--...++|..+-++. ...
T Consensus 405 eaIL~~lk~~~ppv~fkllgTlrM~~d~qe---~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kd 481 (604)
T KOG4500|consen 405 EAILLQLKLASPPVTFKLLGTLRMIRDSQE---YIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKD 481 (604)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhchH---HHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhh
Confidence 999999999889899888888876655433 11111111 1336778888888876 46667777777776542 334
Q ss_pred HHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcC
Q 003530 493 LADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAEL 531 (813)
Q Consensus 493 ~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L 531 (813)
+.-.+..+ |+++.+|.++...+- ..+..|.-+|..+
T Consensus 482 v~~tvpks-g~ik~~Vsm~t~~hi--~mqnEalVal~~~ 517 (604)
T KOG4500|consen 482 VILTVPKS-GGIKEKVSMFTKNHI--NMQNEALVALLST 517 (604)
T ss_pred hHhhcccc-ccHHHHHHHHHHhhH--HHhHHHHHHHHHH
Confidence 45567777 999999999988774 5555555555443
No 20
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.64 E-value=1.8e-16 Score=125.00 Aligned_cols=63 Identities=48% Similarity=0.937 Sum_probs=59.3
Q ss_pred ceecccccccCCCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCcccHhhHHHHHHH
Q 003530 32 AFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNPSIALRNTIEEW 100 (813)
Q Consensus 32 ~~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~~ 100 (813)
+|.||||+++|+|||+++|||+|||.||.+|+.. ..+||+|++++...++.+|..+++.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~------~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS------HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH------CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 4899999999999999999999999999999985 36899999999888999999999999998
No 21
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=2.3e-13 Score=140.40 Aligned_cols=389 Identities=15% Similarity=0.165 Sum_probs=286.7
Q ss_pred HHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhHHHHHhhh-HHHHHHHHhc
Q 003530 250 LLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTV-GSCLINIMKS 328 (813)
Q Consensus 250 ~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g-i~~Lv~lL~~ 328 (813)
..+...|...|.||+.+-.--.+|++...|.-||+.|...+.++.......|..|+...+||..+.+.| +..|++++..
T Consensus 277 eqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~ 356 (791)
T KOG1222|consen 277 EQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPI 356 (791)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCC
Confidence 345667788889998887777889999999999999999999999999999999999999999999998 6999999999
Q ss_pred CCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCcc
Q 003530 329 GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQT 408 (813)
Q Consensus 329 ~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~ 408 (813)
..++++...+..|.||+.....+..|+..|.+|.|..+|.+. .-+.-|+.+|..++..+..+ . .
T Consensus 357 ~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d-------~~~~iA~~~lYh~S~dD~~K-~--------M 420 (791)
T KOG1222|consen 357 QHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSD-------TKHGIALNMLYHLSCDDDAK-A--------M 420 (791)
T ss_pred CCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCc-------ccchhhhhhhhhhccCcHHH-H--------H
Confidence 999999999999999999999999999999999999999863 34556788888876654322 2 5
Q ss_pred ccchhhHHHHHHhhcC-CChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCC
Q 003530 409 LVSEDIVHNLLHLISN-TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSP 487 (813)
Q Consensus 409 l~~~~~v~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~ 487 (813)
+....+|+.+...+.+ .+.++.-..+..-.|||.+..+ .+.+.+..|+..|.+..-...+-+. .+.++++|.
T Consensus 421 fayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRN----aQlvceGqgL~~LM~ra~k~~D~lL---mK~vRniSq 493 (791)
T KOG1222|consen 421 FAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRN----AQLVCEGQGLDLLMERAIKSRDLLL---MKVVRNISQ 493 (791)
T ss_pred HHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcccc----ceEEecCcchHHHHHHHhcccchHH---HHHHHHhhh
Confidence 6677889999887664 3445544444444688877543 2345567778887764433332222 356788887
Q ss_pred CCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhhhccccccCCc
Q 003530 488 HMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSR 567 (813)
Q Consensus 488 ~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~ 567 (813)
+.+..- ..+. ..+..|..++...++ ++.-..++++|+||.-.+-+..+.+.+...||++-..|.....
T Consensus 494 Heg~tq-n~Fi---dyvgdLa~i~~nd~~-E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~------- 561 (791)
T KOG1222|consen 494 HEGATQ-NMFI---DYVGDLAGIAKNDNS-ESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGAD------- 561 (791)
T ss_pred ccchHH-HHHH---HHHHHHHHHhhcCch-HHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCcc-------
Confidence 766542 2222 377889999888775 5677789999999999899999999999999999999886211
Q ss_pred cchhhhHhHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHHhcCC-chHHHHHHHHHHhhhccccccccCCCCCCCCC
Q 003530 568 FVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNG-LDKVQMVSATALENLSLESKNLTKLPELPPSG 646 (813)
Q Consensus 568 ~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~~vk~~Aa~aL~~ls~~~~~l~~~~~~~~~~ 646 (813)
..+++-..+-++..++ .|..+...+..+|+|+.|++||+... +++....-......+-.+....
T Consensus 562 -eddLvL~~vi~~GT~a----~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr---------- 626 (791)
T KOG1222|consen 562 -EDDLVLQIVIACGTMA----RDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTR---------- 626 (791)
T ss_pred -chhhhhHHHHHhhhhh----hhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH----------
Confidence 1234434444455555 47788888889999999999998752 3333323333333332221000
Q ss_pred CCcccccccccCCCCCCCCcccccccCccccchhhhccchHHHHHhhccCchhHHHHHHHHHHhhhhcCcch
Q 003530 647 FCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDI 718 (813)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~ 718 (813)
...+-+...=.-|++++++.+.++|...-.+|-.++..+..|
T Consensus 627 ------------------------------~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EW 668 (791)
T KOG1222|consen 627 ------------------------------RLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEW 668 (791)
T ss_pred ------------------------------HHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHH
Confidence 000112223346999999999999999999999998766644
No 22
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.60 E-value=1.1e-13 Score=139.70 Aligned_cols=197 Identities=18% Similarity=0.179 Sum_probs=174.4
Q ss_pred hhcCCCHHHHHHHhcc-CcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccC
Q 003530 188 LGQGDTVRTIVKFLSH-ELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKC 266 (813)
Q Consensus 188 i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~ 266 (813)
+.+.+.++.|+.+|+. .++.+++.+..++.+.+.++.+++.|. +.|+++.+..+|. ++++.+++.|+.+|.|++.+
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir-~~Ggi~lI~~lL~--~p~~~vr~~AL~aL~Nls~~ 84 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIR-DLGGISLIGSLLN--DPNPSVREKALNALNNLSVN 84 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHH-HcCCHHHHHHHcC--CCChHHHHHHHHHHHhcCCC
Confidence 4677889999999984 578899999999999999998888886 6799999999999 78999999999999999999
Q ss_pred CccHHHHHHcCChHHHHHHHccC--CHHHHHHHHHHHHHhcCCchhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 003530 267 ENNVRQMAENGRLQPLLTQILEG--PQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQI 344 (813)
Q Consensus 267 ~~~~~~i~~~G~i~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~L 344 (813)
.+|+..|-. .++.+.+.+.+. +.+++..+.++|.+|+..++.+..+.. .++.++.+|.+|+..++..++++|.||
T Consensus 85 ~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~-~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 85 DENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN-YIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred hhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh-hHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 999998865 688888876655 678999999999999998888777754 589999999999999999999999999
Q ss_pred hCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q 003530 345 SSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSG 394 (813)
Q Consensus 345 s~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~ 394 (813)
+.++.+.+.++.+.++..++.++.... +.++...++..+.||..+-
T Consensus 162 S~np~~~~~Ll~~q~~~~~~~Lf~~~~----~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 162 SENPDMTRELLSAQVLSSFLSLFNSSE----SKENLLRVLTFFENINENI 207 (254)
T ss_pred ccCHHHHHHHHhccchhHHHHHHccCC----ccHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998743 5788889999999997643
No 23
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.59 E-value=1.1e-12 Score=134.00 Aligned_cols=436 Identities=13% Similarity=0.066 Sum_probs=310.0
Q ss_pred cccCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccC---c----HHHHHHHHHHHHHh
Q 003530 147 HNSELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHE---L----SREREEAVSLLYEL 219 (813)
Q Consensus 147 ~~~g~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~---~----~~~~~~a~~~L~~l 219 (813)
.++|++..|.+...|++.++...+.++|+|+|.++.++|..+.+.||-..++++|+.- + .+.-..+.++|.|.
T Consensus 84 I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny 163 (604)
T KOG4500|consen 84 IDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNY 163 (604)
T ss_pred hHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHh
Confidence 4578899999999999999999999999999999999999999999988888887532 2 24456677888888
Q ss_pred hcCch-hHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhc-cCCccH-HHHHHcCChHHHHHHHccC-CHHHHH
Q 003530 220 SKSEA-LCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLE-KCENNV-RQMAENGRLQPLLTQILEG-PQETKL 295 (813)
Q Consensus 220 s~~~~-~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~-~~~~~~-~~i~~~G~i~~Lv~lL~~~-~~~~~~ 295 (813)
..+.+ .+.+.. +.|+++.|+.++..+-.+....+.......||. ...++. ....++..+..++++|.+. .++..+
T Consensus 164 ~l~~~~l~aq~~-~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~e 242 (604)
T KOG4500|consen 164 ILDSRELRAQVA-DAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDE 242 (604)
T ss_pred hCCcHHHHHHHH-hcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhh
Confidence 76654 455554 689999999999865567777777666666663 233332 3344567777888888754 667788
Q ss_pred HHHHHHHHhcCCchhHHHHHhhh-HHHHHHHHhc-CCHHHH-------HHHHHHHHHhhCCcccHHHHHHcC-ChHHHHH
Q 003530 296 SLAAFLGDLALNSDVKVLVARTV-GSCLINIMKS-GNMQAR-------EAALKALNQISSCEPSAKVLIHAG-ILPPLVK 365 (813)
Q Consensus 296 ~a~~~L~~L~~~~~~~~~i~~~g-i~~Lv~lL~~-~~~~~~-------~~a~~aL~~Ls~~~~~~~~i~~~g-~i~~Lv~ 365 (813)
.+..+|...+.++..|-.+++.| +..++++++. +...-+ ..++.-..-|...++.-+.+...| .+..++.
T Consensus 243 M~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~s 322 (604)
T KOG4500|consen 243 MIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLES 322 (604)
T ss_pred HHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHH
Confidence 88899999999999999999998 5888888765 221112 223333333444455555666555 5667777
Q ss_pred HHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcC-----CChHHHHHHHHHHHHc
Q 003530 366 DLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISN-----TGPTIECKLLQVLVGL 440 (813)
Q Consensus 366 lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~-----~~~~~~~~a~~~L~~L 440 (813)
-+.+. +....-.+.-++.|+++.+.... .+++.+.+..|+.+|.. ++...+..++.+|.|+
T Consensus 323 w~~S~-----d~~l~t~g~LaigNfaR~D~~ci---------~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl 388 (604)
T KOG4500|consen 323 WFRSD-----DSNLITMGSLAIGNFARRDDICI---------QLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNL 388 (604)
T ss_pred HhcCC-----chhHHHHHHHHHHhhhccchHHH---------HHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhc
Confidence 77664 35677788889999999876543 47788999999998863 5678888999999999
Q ss_pred ccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHH
Q 003530 441 TSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKE 520 (813)
Q Consensus 441 ~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~ 520 (813)
..--. .+..+...|..+.++.+++...|.++..-...++.+-.. .+.+...+...+..++.||.--++++- .-+
T Consensus 389 ~IPv~----nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~-qe~~a~eL~kn~~l~ekLv~Wsks~D~-aGv 462 (604)
T KOG4500|consen 389 MIPVS----NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDS-QEYIACELAKNPELFEKLVDWSKSPDF-AGV 462 (604)
T ss_pred cccCC----chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhc-hHHHHHHHhcCHHHHHHHHHhhhCCcc-chh
Confidence 87533 356778889999999999999999988877777766542 233555566555778889988888875 345
Q ss_pred HHHHHHHHhcCCCC--CHHHHHHHHhcCcHHHHHHHhhhhccccccCCccchhhhHhHHHHHHHHhcc-CC---CChH--
Q 003530 521 QAAAVGLLAELPER--DLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFV-LS---DEPD-- 592 (813)
Q Consensus 521 ~~~a~~~L~~L~~~--~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~-l~---~~~~-- 592 (813)
-..+-.++..+.++ ...+...+-+.|+|+..+..+... .-.+++.++-+|+.+... +. .+-+
T Consensus 463 ~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~----------hi~mqnEalVal~~~~~~yl~~~~kd~ea~ 532 (604)
T KOG4500|consen 463 AGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKN----------HINMQNEALVALLSTESKYLIVIGKDLEAV 532 (604)
T ss_pred hhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHh----------hHHHhHHHHHHHHHHHHHhccccchhHHHH
Confidence 55666677666654 355667788999999999998751 234556666666654432 00 0111
Q ss_pred -HHHHHHHcCchHHHHHHHhcC
Q 003530 593 -AIALCCEHNLAALFIELLQSN 613 (813)
Q Consensus 593 -~~~~~~~~~~i~~L~~lL~~~ 613 (813)
.+..+..+|.-.....+..++
T Consensus 533 ~l~~~lik~~~~~~~a~~I~~~ 554 (604)
T KOG4500|consen 533 FLAILLIKHGYANVAATIIASP 554 (604)
T ss_pred HHHHHHHHhhhhhhhhHHhcCc
Confidence 233445566666666666666
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.59 E-value=3.1e-12 Score=144.26 Aligned_cols=393 Identities=14% Similarity=0.169 Sum_probs=277.3
Q ss_pred cHHHHHHHHHHHhhcCCcccccccccCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhcc
Q 003530 124 DIMPALKYVQYFCQSSRSNKHVVHNSELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSH 203 (813)
Q Consensus 124 ~~~~al~~l~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~ 203 (813)
.+..+++.|..+.... .... ...+..+.|...|.++++.++..++..|.+++.+++.....+.+.+.++.++.+|.+
T Consensus 54 ~v~~~~~iL~~~l~~~-~~~~--l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~ 130 (503)
T PF10508_consen 54 QVELICDILKRLLSAL-SPDS--LLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD 130 (503)
T ss_pred HHHHHHHHHHHHHhcc-CHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC
Confidence 3334444555544432 2111 145677888889999999999999999999998887667888899999999999999
Q ss_pred CcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhcc-CCccHHHHHHcCChHHH
Q 003530 204 ELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEK-CENNVRQMAENGRLQPL 282 (813)
Q Consensus 204 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~G~i~~L 282 (813)
++..+...|+.+|.+++.++...+.++. .+.+..|..++. ..+..++.++..++.+++. +++....+.+.|.++.+
T Consensus 131 ~d~~Va~~A~~~L~~l~~~~~~~~~l~~-~~~~~~L~~l~~--~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~l 207 (503)
T PF10508_consen 131 PDLSVAKAAIKALKKLASHPEGLEQLFD-SNLLSKLKSLMS--QSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLL 207 (503)
T ss_pred CcHHHHHHHHHHHHHHhCCchhHHHHhC-cchHHHHHHHHh--ccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHH
Confidence 9999999999999999999888887764 577999999998 5678889999999999975 45556677788999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHhcCCchhHHHHHhhh-HHHHHHHHhcC--CH---H-HHHHHHHHHHHhhCC-cccHHHH
Q 003530 283 LTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTV-GSCLINIMKSG--NM---Q-AREAALKALNQISSC-EPSAKVL 354 (813)
Q Consensus 283 v~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g-i~~Lv~lL~~~--~~---~-~~~~a~~aL~~Ls~~-~~~~~~i 354 (813)
+..|.++|.-++.+++.+|..|+..+.+...+.+.| ++.|..++... ++ . ..-..+....+++.. +....
T Consensus 208 l~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~-- 285 (503)
T PF10508_consen 208 LKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVL-- 285 (503)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHH--
Confidence 999999999999999999999999888999999888 69999998653 22 1 122333566667664 22111
Q ss_pred HHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHH
Q 003530 355 IHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLL 434 (813)
Q Consensus 355 ~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~ 434 (813)
+..|.++..+...- ...+...+..|..+++.++...++...+. .+.+.. -..++..+-....++..++|..++
T Consensus 286 ---~~~p~~~~~l~~~~-~s~d~~~~~~A~dtlg~igst~~G~~~L~-~~~~~~--~~~~l~~~~~~~~~~~~~lk~r~l 358 (503)
T PF10508_consen 286 ---ELYPAFLERLFSML-ESQDPTIREVAFDTLGQIGSTVEGKQLLL-QKQGPA--MKHVLKAIGDAIKSGSTELKLRAL 358 (503)
T ss_pred ---HHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHhCCHHHHHHHH-hhcchH--HHHHHHHHHHHhcCCchHHHHHHH
Confidence 23344444444210 01357888999999999998777655320 000000 022344444556678889999999
Q ss_pred HHHHHcccCCCc--hHHHH---H---HHHhcCCHH-HHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHH
Q 003530 435 QVLVGLTSSPTT--VLSVV---S---AIKSSGATI-SLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLG 505 (813)
Q Consensus 435 ~~L~~L~~~~~~--~~~~~---~---~i~~~g~i~-~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~ 505 (813)
.+|.++-..+.. ..++. . .....+... .++.+++.+-+++|.++.++|..|+.+.-. ...+...+|.++
T Consensus 359 ~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg--~~~i~~~~gfie 436 (503)
T PF10508_consen 359 HALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWG--QREICSSPGFIE 436 (503)
T ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHH--HHHHHhCccHHh
Confidence 999999443221 11221 1 122234445 788999999999999999999999965322 234555557777
Q ss_pred HHHHhhhcCCC-ChHHHHHHHHHHhcCCC
Q 003530 506 SLIRVISENVG-ISKEQAAAVGLLAELPE 533 (813)
Q Consensus 506 ~Lv~ll~~~~~-~~~~~~~a~~~L~~L~~ 533 (813)
-|++--.+.+. ..+.|...+..|.+...
T Consensus 437 ~lldr~~E~~K~~ke~K~~ii~~l~~~~~ 465 (503)
T PF10508_consen 437 YLLDRSTETTKEGKEAKYDIIKALAKSST 465 (503)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 77665444332 22455566666664443
No 25
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=5e-11 Score=123.41 Aligned_cols=385 Identities=15% Similarity=0.150 Sum_probs=281.0
Q ss_pred HHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHc
Q 003530 208 EREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQIL 287 (813)
Q Consensus 208 ~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~ 287 (813)
..+.|+-.|.||+.+-..-.++.+ ...+..||+.|. ..+.++.......|..|+...+|+..|.+.|.|+.|+++..
T Consensus 279 LLrva~ylLlNlAed~~~ElKMrr-kniV~mLVKaLd--r~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp 355 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAEDISVELKMRR-KNIVAMLVKALD--RSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFP 355 (791)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHH-HhHHHHHHHHHc--ccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcC
Confidence 356788889999988776666654 588999999998 67788999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCchhHHHHHhhh-HHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHH
Q 003530 288 EGPQETKLSLAAFLGDLALNSDVKVLVARTV-GSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKD 366 (813)
Q Consensus 288 ~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g-i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~l 366 (813)
..+++++......|.|++.+...+..+...| +|.|+.+|.+.+ -..-|+..|+.++.++..+..+.....|+.+++.
T Consensus 356 ~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~ 433 (791)
T KOG1222|consen 356 IQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKD 433 (791)
T ss_pred CCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 799999997543 3457899999999999999999999999999988
Q ss_pred HhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHh-hcCCChHHHHHHHHHHHHcccCCC
Q 003530 367 LFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHL-ISNTGPTIECKLLQVLVGLTSSPT 445 (813)
Q Consensus 367 L~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~l-L~~~~~~~~~~a~~~L~~L~~~~~ 445 (813)
+.... ..++-........|||.+..+.+ .+....++..|++. +++.++- ....+.+++.+..
T Consensus 434 v~~~~----~~~vdl~lia~ciNl~lnkRNaQ---------lvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqHeg 496 (791)
T KOG1222|consen 434 VLSGT----GSEVDLALIALCINLCLNKRNAQ---------LVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQHEG 496 (791)
T ss_pred HHhcC----CceecHHHHHHHHHHHhccccce---------EEecCcchHHHHHHHhcccchH----HHHHHHHhhhccc
Confidence 77643 23444444555568887655433 34444556666654 3344442 2345667776644
Q ss_pred chHHHHHHHHhcCCHHHHHHhhhCCCh-HHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHH
Q 003530 446 TVLSVVSAIKSSGATISLVQFVEAPQN-DLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAA 524 (813)
Q Consensus 446 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a 524 (813)
... ..+. .-+..|...+...+. .....+...|.+|.-. .-.+...+... ..+|-+-..|...-..++.....
T Consensus 497 ~tq---n~Fi--dyvgdLa~i~~nd~~E~F~~EClGtlanL~v~-dldw~~ilq~~-~LvPw~k~~L~pga~eddLvL~~ 569 (791)
T KOG1222|consen 497 ATQ---NMFI--DYVGDLAGIAKNDNSESFGLECLGTLANLKVT-DLDWAKILQSE-NLVPWMKTQLQPGADEDDLVLQI 569 (791)
T ss_pred hHH---HHHH--HHHHHHHHHhhcCchHHHHHHHHHHHhhcccC-CCCHHHHHhhc-cccHHHHHhhcCCccchhhhhHH
Confidence 211 1111 235566666766555 4567777888888731 22333445544 78888888887776545666666
Q ss_pred HHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhhhccccccCCccchhhhHhHHHHHHHHhccCCCChHHHHHHHHcCch-
Q 003530 525 VGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLA- 603 (813)
Q Consensus 525 ~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~~i- 603 (813)
+-.++..+. +......+..++.|+.++++|...+. +.++.-..+-+...+.. ....++.+.+....
T Consensus 570 vi~~GT~a~-d~~cA~Lla~a~~i~tlieLL~a~Qe--------DDEfV~QiiyVF~Q~l~----He~tr~~miket~~~ 636 (791)
T KOG1222|consen 570 VIACGTMAR-DLDCARLLAPAKLIDTLIELLQACQE--------DDEFVVQIIYVFLQFLK----HELTRRLMIKETALG 636 (791)
T ss_pred HHHhhhhhh-hhHHHHHhCccccHHHHHHHHHhhcc--------cchHHHHHHHHHHHHHH----HHHHHHHHHhhccch
Confidence 666666666 66777888999999999999997442 34444444445555542 45556665554444
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhhhcccccc
Q 003530 604 ALFIELLQSNGLDKVQMVSATALENLSLESKN 635 (813)
Q Consensus 604 ~~L~~lL~~~~~~~vk~~Aa~aL~~ls~~~~~ 635 (813)
..++.|+.+. +.++|+-+-.+|-.++.....
T Consensus 637 AylIDLMHDk-N~eiRkVCDn~LdIiae~d~E 667 (791)
T KOG1222|consen 637 AYLIDLMHDK-NAEIRKVCDNALDIIAEHDKE 667 (791)
T ss_pred HHHHHHHhcc-cHHHHHHHHHHHHHHHHhhHH
Confidence 4788999888 999999999999888877654
No 26
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.52 E-value=7.6e-12 Score=135.06 Aligned_cols=479 Identities=12% Similarity=0.106 Sum_probs=315.9
Q ss_pred cccHHHHHHHHHHHhhcCCcccccccccCcHHHHHHHhcC--CCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHH
Q 003530 122 ESDIMPALKYVQYFCQSSRSNKHVVHNSELIPMIIDMLKS--SSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVK 199 (813)
Q Consensus 122 ~~~~~~al~~l~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s--~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~ 199 (813)
++....+.....++..+.+.+|..+.+.|+++.|..+++. +..+.+......+..+..+.+.+...+.+.+-++.|.+
T Consensus 23 pe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~ 102 (678)
T KOG1293|consen 23 PEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQ 102 (678)
T ss_pred HHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHH
Confidence 4455788889999999999999989999999999999864 45667767777888888888889999999999999999
Q ss_pred HhccCc-HHHHHHHHHHHHHhhcCchhHhHH--hhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHc
Q 003530 200 FLSHEL-SREREEAVSLLYELSKSEALCEKI--GSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAEN 276 (813)
Q Consensus 200 lL~~~~-~~~~~~a~~~L~~ls~~~~~~~~i--~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~ 276 (813)
+|++.| ..+++...+.++++-......... ......++.+..++. .+...+...-+....++|...+++..+.++
T Consensus 103 LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s--~~lk~~~~l~~~~~a~~s~~~~hq~Il~Na 180 (678)
T KOG1293|consen 103 LLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYS--IELKYISRLDVSRAAHLSSTKDHQLILCNA 180 (678)
T ss_pred HhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHh--hhhhhhhhhhhhhhccccccchhhheeccc
Confidence 999999 777899999999987654332222 112233444444443 255566666677777888888899999999
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHH---HhcCCch-hHHHHH----hhhH-H--HHHHHHhcCCHHHHHHHHHHHHHhh
Q 003530 277 GRLQPLLTQILEGPQETKLSLAAFLG---DLALNSD-VKVLVA----RTVG-S--CLINIMKSGNMQAREAALKALNQIS 345 (813)
Q Consensus 277 G~i~~Lv~lL~~~~~~~~~~a~~~L~---~L~~~~~-~~~~i~----~~gi-~--~Lv~lL~~~~~~~~~~a~~aL~~Ls 345 (813)
|..+.+.-++...+..++..+...+. ++..+++ ....+. ..|+ + .+.+++++++...+..++.+|.++.
T Consensus 181 ~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~ 260 (678)
T KOG1293|consen 181 GILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYL 260 (678)
T ss_pred cchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHH
Confidence 99999988888878899999999988 7766543 332222 2344 3 5566778888888888888888877
Q ss_pred CCcccHH------HHHHcC--ChH--HHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhH
Q 003530 346 SCEPSAK------VLIHAG--ILP--PLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIV 415 (813)
Q Consensus 346 ~~~~~~~------~i~~~g--~i~--~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v 415 (813)
....+.. ...+.| .+- ..+.++..+ -...-..++.+.+.++.-....+. ...+...+
T Consensus 261 ~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P-----~~s~l~~~~~l~c~~a~~~sklq~--------~~~e~~~~ 327 (678)
T KOG1293|consen 261 RKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDP-----GLSTLDHTNVLFCILARFASKLQL--------PQHEEATL 327 (678)
T ss_pred hccccccccccceeeccCchHHHHHHhhheeecCC-----ceeehhhhhhhHHHHHHHHHhhhh--------HHhhhhhh
Confidence 6332211 111222 111 111122221 122223333333333321111111 23345566
Q ss_pred HHHHHhhcC------CChHHHHHHHHHH---HHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhC
Q 003530 416 HNLLHLISN------TGPTIECKLLQVL---VGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLS 486 (813)
Q Consensus 416 ~~Lv~lL~~------~~~~~~~~a~~~L---~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls 486 (813)
+.++++++. ..++.+.-++.-. ..++.... -..++.+.+--....+..+....+.+.+.+|+.++.+++
T Consensus 328 ~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~--i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~s 405 (678)
T KOG1293|consen 328 KTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLE--ISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFS 405 (678)
T ss_pred hhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcc--hhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHH
Confidence 677777653 3344333222211 12222211 123333433333444555555566678888888888776
Q ss_pred CCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhhhccccccCC
Q 003530 487 PHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGS 566 (813)
Q Consensus 487 ~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~ 566 (813)
... ......+... .+..+||+++..+.. .++..+.++|.|+...-...+..+.+.|+|..+.+.+.+
T Consensus 406 rsV-~aL~tg~~~~-dv~~plvqll~dp~~--~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~--------- 472 (678)
T KOG1293|consen 406 RSV-SALRTGLKRN-DVAQPLVQLLMDPEI--MIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTD--------- 472 (678)
T ss_pred HHH-HHHHcCCccc-hhHHHHHHHhhCcch--hHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcC---------
Confidence 421 1111123333 688999999988875 899999999999998888999999999999999999876
Q ss_pred ccchhhhHhHHHHHHHHhccCCCChHHHHHHHHcCc-hHHHHHHHhcCCchHHHHHHHHHHhhhcccccc
Q 003530 567 RFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNL-AALFIELLQSNGLDKVQMVSATALENLSLESKN 635 (813)
Q Consensus 567 ~~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~~-i~~L~~lL~~~~~~~vk~~Aa~aL~~ls~~~~~ 635 (813)
.+...+..+.++|.++.++ .+...+.... ..+ ...+..+.+++ ++.||+.+-..|.||..+...
T Consensus 473 -~~~n~r~~~~~~Lr~l~f~--~de~~k~~~~-~ki~a~~i~~l~nd~-d~~Vqeq~fqllRNl~c~~~~ 537 (678)
T KOG1293|consen 473 -PDFNSRANSLWVLRHLMFN--CDEEEKFQLL-AKIPANLILDLINDP-DWAVQEQCFQLLRNLTCNSRK 537 (678)
T ss_pred -CCchHHHHHHHHHHHHHhc--chHHHHHHHH-HHhhHHHHHHHHhCC-CHHHHHHHHHHHHHhhcCcHH
Confidence 2456678899999999976 4444443332 232 33556666777 999999999999999887543
No 27
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.50 E-value=1e-11 Score=134.12 Aligned_cols=491 Identities=14% Similarity=0.124 Sum_probs=299.2
Q ss_pred CCCHHHHHHHHHHHHhh-ccCCccHHHHHHcCChHHHHHHHccC--CHHHHHHHHHHHHHhcCCc-hhHHHHHhhh-HHH
Q 003530 247 SENLLTVEKAEKTLANL-EKCENNVRQMAENGRLQPLLTQILEG--PQETKLSLAAFLGDLALNS-DVKVLVARTV-GSC 321 (813)
Q Consensus 247 s~~~~~~~~a~~~L~~L-~~~~~~~~~i~~~G~i~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g-i~~ 321 (813)
+.+|+....|..-..|+ ..+++++.-+.+.|+++.|..++... ..+.+...+.++..+...+ +....+.+.+ .+.
T Consensus 20 ~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~ 99 (678)
T KOG1293|consen 20 HLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLK 99 (678)
T ss_pred cCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHH
Confidence 46777777777777887 46778888899999999999998765 5566766777777777644 4556666666 799
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHhhCCcccHH---HHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCC
Q 003530 322 LINIMKSGN-MQAREAALKALNQISSCEPSAK---VLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDF 397 (813)
Q Consensus 322 Lv~lL~~~~-~~~~~~a~~aL~~Ls~~~~~~~---~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~ 397 (813)
|+++|.+.+ ..+++..++++.++-...+... ......+++.+..++. .. .....+.-+....+++... .+
T Consensus 100 Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s-~~----lk~~~~l~~~~~a~~s~~~-~h 173 (678)
T KOG1293|consen 100 LLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYS-IE----LKYISRLDVSRAAHLSSTK-DH 173 (678)
T ss_pred HHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHh-hh----hhhhhhhhhhhhccccccc-hh
Confidence 999998877 7899999999999987543222 2222334454444443 11 1233333333444444433 22
Q ss_pred cccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHH---HcccC-CCchHHHHHHHHhcCCHH--HHHHhhhCCC
Q 003530 398 DSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLV---GLTSS-PTTVLSVVSAIKSSGATI--SLVQFVEAPQ 471 (813)
Q Consensus 398 ~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~---~L~~~-~~~~~~~~~~i~~~g~i~--~Lv~lL~~~~ 471 (813)
+ .++...++.+.+.-++...+..+|..|...+. ++..+ +...........+.|..+ .+-.++++++
T Consensus 174 q--------~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~ 245 (678)
T KOG1293|consen 174 Q--------LILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPD 245 (678)
T ss_pred h--------heeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCC
Confidence 2 25667787888777777778889999999998 66555 444445555555555555 4667888888
Q ss_pred hHHHHHHHHHHHHhCCCC---CHHHHH-HHhcccc--cHH--HHHHhhhcCCCC-hHHHHHHHHHHhcCCCCCHHHHHHH
Q 003530 472 NDLRLASIELIQNLSPHM---GHELAD-ALRGAVG--QLG--SLIRVISENVGI-SKEQAAAVGLLAELPERDLGLTRQM 542 (813)
Q Consensus 472 ~~v~~~A~~~L~~Ls~~~---~~~~~~-~l~~~~g--~i~--~Lv~ll~~~~~~-~~~~~~a~~~L~~L~~~~~~~~~~l 542 (813)
...+..++.++..+-... ..-++. ...+. | .+- ..+.++..+.-. .++...--..++.+. ..+....
T Consensus 246 ~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dm-gd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~---sklq~~~ 321 (678)
T KOG1293|consen 246 FSERLRSLECLVPYLRKSFNYDPLPWWFIFFDM-GDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFA---SKLQLPQ 321 (678)
T ss_pred ccHHHHHHHHHHHHHhccccccccccceeeccC-chHHHHHHhhheeecCCceeehhhhhhhHHHHHHHH---HhhhhHH
Confidence 887777776665554211 111111 11111 1 010 112222222210 111111111222222 2233444
Q ss_pred HhcCcHHHHHHHhhhhccccccCCccchhhhH---hHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHHhcCCchHHH
Q 003530 543 LDEGAFGLIFSRVKSIQLGETRGSRFVTPFLE---GLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQ 619 (813)
Q Consensus 543 ~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e---~a~~aL~~~~~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~vk 619 (813)
.+....+.+.+++.....-. . ..+.... +--..+.++..+ .....++.+.+.-+...+..+.... +....
T Consensus 322 ~e~~~~~~~~ellf~~~sl~--a--~~~~~~~i~l~e~~i~~~~~~~--~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~ 394 (678)
T KOG1293|consen 322 HEEATLKTTTELLFICASLA--A--SDEKYRLILLNETLILNHLEYG--LEISLKKEILETTTESHLMCLPPIK-DHDFV 394 (678)
T ss_pred hhhhhhhhHHHHHHHHHHHh--h--cchhhhHHHhhhhhhhhhhhhh--cchhHHHHHHHHHHHHHHccccccc-cHHHH
Confidence 56666677777765421000 0 0111110 011122222222 1233344444443444444444444 67788
Q ss_pred HHHHHHHhhhccccccccCCCCCCCCCCCcccccccccCCCCCCCCcccccccCccccchhhhccchHHHHHhhccCchh
Q 003530 620 MVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEK 699 (813)
Q Consensus 620 ~~Aa~aL~~ls~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gai~~Lv~lL~~~~~~ 699 (813)
+.|+.++.++++....++.. +-...+..|||++|.+++.-
T Consensus 395 aaa~l~~~s~srsV~aL~tg----------------------------------------~~~~dv~~plvqll~dp~~~ 434 (678)
T KOG1293|consen 395 AAALLCLKSFSRSVSALRTG----------------------------------------LKRNDVAQPLVQLLMDPEIM 434 (678)
T ss_pred HHHHHHHHHHHHHHHHHHcC----------------------------------------CccchhHHHHHHHhhCcchh
Confidence 88888888888765544221 12466899999999999999
Q ss_pred HHHHHHHHHHhhhhcCcchhhHHHHHHhhcCcHHHHHHHhhcCChHHHHHHHHHHHHHHcchhhhhhhcCCCcch-HHHH
Q 003530 700 VVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVS-TALV 778 (813)
Q Consensus 700 v~~~A~~AL~~L~~~~~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~~a~~aL~~i~~~~~~~~~~~~~~~~~-~~Lv 778 (813)
|...+++||+||+.+-.+. ...+.+.|||+.+..++. ..+.+.+..+.|+|..+.-..+...+....+.++ .-|+
T Consensus 435 i~~~~lgai~NlVmefs~~---kskfl~~ngId~l~s~~~-~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~ 510 (678)
T KOG1293|consen 435 IMGITLGAICNLVMEFSNL---KSKFLRNNGIDILESMLT-DPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLIL 510 (678)
T ss_pred HHHHHHHHHHHHHhhcccH---HHHHHHcCcHHHHHHHhc-CCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHH
Confidence 9999999999999886544 366788899999999995 9999999999999988875533333332333333 4678
Q ss_pred HHhhhcCchhHHHHHHHHHHhcccCCCC
Q 003530 779 DAFQHADYRTRQIAERALKHIDKIPNFS 806 (813)
Q Consensus 779 ~~l~~~~~~~~~~Aa~~L~~l~~~~~~s 806 (813)
.+..+.++.+++.+-..|++|.=-...|
T Consensus 511 ~l~nd~d~~Vqeq~fqllRNl~c~~~~s 538 (678)
T KOG1293|consen 511 DLINDPDWAVQEQCFQLLRNLTCNSRKS 538 (678)
T ss_pred HHHhCCCHHHHHHHHHHHHHhhcCcHHH
Confidence 8889999999999999999987543333
No 28
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.50 E-value=1.2e-12 Score=132.09 Aligned_cols=194 Identities=15% Similarity=0.157 Sum_probs=166.1
Q ss_pred hhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhH
Q 003530 232 INGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVK 311 (813)
Q Consensus 232 ~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~ 311 (813)
.++-+..|+.+|.. +.+|.+++.+..++.+.+.++.++..|.+.|+++.+..+|.++++.+++.|..+|.|++.+.+++
T Consensus 10 ~~~~l~~Ll~lL~~-t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 10 EAQELQKLLCLLES-TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred CHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 45788999999985 67999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhhHHHHHHHHhc--CCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHH
Q 003530 312 VLVARTVGSCLINIMKS--GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILAN 389 (813)
Q Consensus 312 ~~i~~~gi~~Lv~lL~~--~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~n 389 (813)
..|... ++.+.+...+ -+..++..++++|.||+..++.+..+.. .++.++.+|... +..+|..++.+|.|
T Consensus 89 ~~Ik~~-i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G-----~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 89 EQIKMY-IPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSG-----SEKTKVQVLKVLVN 160 (254)
T ss_pred HHHHHH-HHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcC-----ChHHHHHHHHHHHH
Confidence 888654 6666664433 3678999999999999988777777644 699999999874 47899999999999
Q ss_pred HHhcCCCCcccccCCCCccccchhhHHHHHHhhcC-CChHHHHHHHHHHHHcccC
Q 003530 390 VVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISN-TGPTIECKLLQVLVGLTSS 443 (813)
Q Consensus 390 L~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~ 443 (813)
|+.++...+. +....++..|+.+++. .+.++...++..+.++..+
T Consensus 161 LS~np~~~~~---------Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 161 LSENPDMTRE---------LLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred hccCHHHHHH---------HHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 9998775443 5566789999999985 4778888899989888665
No 29
>PRK09687 putative lyase; Provisional
Probab=99.50 E-value=2.2e-12 Score=133.49 Aligned_cols=255 Identities=14% Similarity=0.087 Sum_probs=192.1
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHH
Q 003530 413 DIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHE 492 (813)
Q Consensus 413 ~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~ 492 (813)
..++.|+.+|.+.+..++..++.+|..+-.. ..++.+..++.++++.+|..|+++|..|......
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~--------------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGGQ--------------DVFRLAIELCSSKNPIERDIGADILSQLGMAKRC- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCcc--------------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-
Confidence 3478899999999999999999999766432 2266788899999999999999999998742211
Q ss_pred HHHHHhcccccHHHHHHhh-hcCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhhhccccccCCccchh
Q 003530 493 LADALRGAVGQLGSLIRVI-SENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTP 571 (813)
Q Consensus 493 ~~~~l~~~~g~i~~Lv~ll-~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~ 571 (813)
. . ..++.|..++ ++++ ..+|..|+.+|+++....... ...+++.+...+.+ .+..
T Consensus 88 -----~-~-~a~~~L~~l~~~D~d--~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D----------~~~~ 143 (280)
T PRK09687 88 -----Q-D-NVFNILNNLALEDKS--ACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFD----------KSTN 143 (280)
T ss_pred -----h-H-HHHHHHHHHHhcCCC--HHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhC----------CCHH
Confidence 0 1 3667788774 4444 499999999999986522111 11233444444443 2456
Q ss_pred hhHhHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHHhcCCchHHHHHHHHHHhhhccccccccCCCCCCCCCCCccc
Q 003530 572 FLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASI 651 (813)
Q Consensus 572 ~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~ls~~~~~l~~~~~~~~~~~~~~~ 651 (813)
+...++.+|..+. ++. .++.|+.+|+++ ++.|+..|+.+|+.+...
T Consensus 144 VR~~a~~aLg~~~-----~~~---------ai~~L~~~L~d~-~~~VR~~A~~aLg~~~~~------------------- 189 (280)
T PRK09687 144 VRFAVAFALSVIN-----DEA---------AIPLLINLLKDP-NGDVRNWAAFALNSNKYD------------------- 189 (280)
T ss_pred HHHHHHHHHhccC-----CHH---------HHHHHHHHhcCC-CHHHHHHHHHHHhcCCCC-------------------
Confidence 7788888887654 332 578899999998 899999999999876211
Q ss_pred ccccccCCCCCCCCcccccccCccccchhhhccchHHHHHhhccCchhHHHHHHHHHHhhhhcCcchhhHHHHHHhhcCc
Q 003530 652 FPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGI 731 (813)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~~~~~v 731 (813)
...++++|+++|.+.+.+||..|+.+|+.+.. ..+|
T Consensus 190 ------------------------------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--------------~~av 225 (280)
T PRK09687 190 ------------------------------NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--------------KRVL 225 (280)
T ss_pred ------------------------------CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--------------hhHH
Confidence 13478999999999999999999999998642 2678
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHcchhhhhhhcCCCcchHHHHHHhh-hcCchhHHHHHHHHHH
Q 003530 732 KPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQ-HADYRTRQIAERALKH 798 (813)
Q Consensus 732 ~~L~~ll~~~~~~~~~~~a~~aL~~i~~~~~~~~~~~~~~~~~~~Lv~~l~-~~~~~~~~~Aa~~L~~ 798 (813)
+.|++.|. +++ ++..|+.+|+.|. +...++.|..++. ++|..++.+|-++|.+
T Consensus 226 ~~Li~~L~-~~~--~~~~a~~ALg~ig-----------~~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 226 SVLIKELK-KGT--VGDLIIEAAGELG-----------DKTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHHc-CCc--hHHHHHHHHHhcC-----------CHhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 99999993 544 7788999999993 3445679999996 8999999999998865
No 30
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.48 E-value=6.8e-12 Score=151.62 Aligned_cols=277 Identities=17% Similarity=0.190 Sum_probs=212.3
Q ss_pred cCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHH
Q 003530 357 AGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQV 436 (813)
Q Consensus 357 ~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~ 436 (813)
.+.++.|+..|.+. ++.+++.|+.+|..+. ....++.|+.+|++.++.+|..|+.+
T Consensus 620 ~~~~~~L~~~L~D~-----d~~VR~~Av~~L~~~~-------------------~~~~~~~L~~aL~D~d~~VR~~Aa~a 675 (897)
T PRK13800 620 APSVAELAPYLADP-----DPGVRRTAVAVLTETT-------------------PPGFGPALVAALGDGAAAVRRAAAEG 675 (897)
T ss_pred chhHHHHHHHhcCC-----CHHHHHHHHHHHhhhc-------------------chhHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45678888999753 5899999999997642 24578999999999999999999999
Q ss_pred HHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCC
Q 003530 437 LVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVG 516 (813)
Q Consensus 437 L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~ 516 (813)
|..+..... ..+.|..+|.++++.+|..|+.+|..+.. +....|+..|.+++.
T Consensus 676 L~~l~~~~~-------------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~--------------~~~~~l~~~L~D~d~ 728 (897)
T PRK13800 676 LRELVEVLP-------------PAPALRDHLGSPDPVVRAAALDVLRALRA--------------GDAALFAAALGDPDH 728 (897)
T ss_pred HHHHHhccC-------------chHHHHHHhcCCCHHHHHHHHHHHHhhcc--------------CCHHHHHHHhcCCCH
Confidence 987743211 13467778888999999999998887542 223457778888885
Q ss_pred ChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhhhccccccCCccchhhhHhHHHHHHHHhccCCCChHHHHH
Q 003530 517 ISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIAL 596 (813)
Q Consensus 517 ~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~~~~~~ 596 (813)
.+|..|+..|+.+.. .+.|..++.+ .+..+...++.+|..+.. ..
T Consensus 729 --~VR~~Av~aL~~~~~--------------~~~l~~~l~D----------~~~~VR~~aa~aL~~~~~-----~~---- 773 (897)
T PRK13800 729 --RVRIEAVRALVSVDD--------------VESVAGAATD----------ENREVRIAVAKGLATLGA-----GG---- 773 (897)
T ss_pred --HHHHHHHHHHhcccC--------------cHHHHHHhcC----------CCHHHHHHHHHHHHHhcc-----cc----
Confidence 999999999987632 2345566655 346777888888887652 11
Q ss_pred HHHcCchHHHHHHHhcCCchHHHHHHHHHHhhhccccccccCCCCCCCCCCCcccccccccCCCCCCCCcccccccCccc
Q 003530 597 CCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKE 676 (813)
Q Consensus 597 ~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~ls~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (813)
...++.|..+++++ ++.+|..|+.+|+.+...
T Consensus 774 ---~~~~~~L~~ll~D~-d~~VR~aA~~aLg~~g~~-------------------------------------------- 805 (897)
T PRK13800 774 ---APAGDAVRALTGDP-DPLVRAAALAALAELGCP-------------------------------------------- 805 (897)
T ss_pred ---chhHHHHHHHhcCC-CHHHHHHHHHHHHhcCCc--------------------------------------------
Confidence 12367888999998 899999999999765321
Q ss_pred cchhhhccchHHHHHhhccCchhHHHHHHHHHHhhhhcCcchhhHHHHHHhhcCcHHHHHHHhhcCChHHHHHHHHHHHH
Q 003530 677 TFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVER 756 (813)
Q Consensus 677 ~~~l~~~gai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~~a~~aL~~ 756 (813)
...+.+|+..|.+++..||..|+.||+.+... .+++.|+.+| .+++..+|..|+++|.+
T Consensus 806 ------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~--------------~a~~~L~~~L-~D~~~~VR~~A~~aL~~ 864 (897)
T PRK13800 806 ------PDDVAAATAALRASAWQVRQGAARALAGAAAD--------------VAVPALVEAL-TDPHLDVRKAAVLALTR 864 (897)
T ss_pred ------chhHHHHHHHhcCCChHHHHHHHHHHHhcccc--------------chHHHHHHHh-cCCCHHHHHHHHHHHhc
Confidence 11346799999999999999999999987522 4558899999 59999999999999999
Q ss_pred HHcchhhhhhhcCCCcchHHHHHHhhhcCchhHHHHHHHHHH
Q 003530 757 ILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 798 (813)
Q Consensus 757 i~~~~~~~~~~~~~~~~~~~Lv~~l~~~~~~~~~~Aa~~L~~ 798 (813)
+- .+......|..++.+.|+.+|..|+++|.+
T Consensus 865 ~~----------~~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 865 WP----------GDPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred cC----------CCHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 71 122334689999999999999999999976
No 31
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.47 E-value=2e-10 Score=132.71 Aligned_cols=497 Identities=15% Similarity=0.151 Sum_probs=332.0
Q ss_pred ccHHHHHHHHHHHhhcCCcccccccccCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhc
Q 003530 123 SDIMPALKYVQYFCQSSRSNKHVVHNSELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLS 202 (813)
Q Consensus 123 ~~~~~al~~l~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 202 (813)
.+..+++..|-.+...+.... .+.+.+++++.+.+...+.-+--.+..+...+++. .+. ++..+.+=|.
T Consensus 21 ~~~~~~l~kli~~~~~G~~~~------~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~--~~l---~~n~l~kdl~ 89 (526)
T PF01602_consen 21 SKKKEALKKLIYLMMLGYDIS------FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPEL--LIL---IINSLQKDLN 89 (526)
T ss_dssp HHHHHHHHHHHHHHHTT---G------STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHH--HHH---HHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCCc------hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhH--HHH---HHHHHHHhhc
Confidence 455567777655544433322 46788889999999998888888888887766441 221 4667778889
Q ss_pred cCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccC-CccHHHHHHcCChHH
Q 003530 203 HELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKC-ENNVRQMAENGRLQP 281 (813)
Q Consensus 203 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~G~i~~ 281 (813)
++++..|..|+.+|.++.. ++.. +-.++.+.+++. ++++.+++.|+.++..+... ++... .. .++.
T Consensus 90 ~~n~~~~~lAL~~l~~i~~-~~~~------~~l~~~v~~ll~--~~~~~VRk~A~~~l~~i~~~~p~~~~---~~-~~~~ 156 (526)
T PF01602_consen 90 SPNPYIRGLALRTLSNIRT-PEMA------EPLIPDVIKLLS--DPSPYVRKKAALALLKIYRKDPDLVE---DE-LIPK 156 (526)
T ss_dssp SSSHHHHHHHHHHHHHH-S-HHHH------HHHHHHHHHHHH--SSSHHHHHHHHHHHHHHHHHCHCCHH---GG-HHHH
T ss_pred CCCHHHHHHHHhhhhhhcc-cchh------hHHHHHHHHHhc--CCchHHHHHHHHHHHHHhccCHHHHH---HH-HHHH
Confidence 9999999999999999873 2222 245678889998 89999999999999998643 33222 22 5889
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcCCchhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCCc-ccHHHHHHcCCh
Q 003530 282 LLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCE-PSAKVLIHAGIL 360 (813)
Q Consensus 282 Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~i 360 (813)
+.++|.+.++.++..|+.++..+-.+++.-..+...-+..|.+++...++..+...++.|..++... ..... ...+
T Consensus 157 l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i 233 (526)
T PF01602_consen 157 LKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRII 233 (526)
T ss_dssp HHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHH
T ss_pred HhhhccCCcchhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHH
Confidence 9999999999999999999999911221111222222566666777899999999999999988754 33311 3467
Q ss_pred HHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHc
Q 003530 361 PPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGL 440 (813)
Q Consensus 361 ~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L 440 (813)
+.+..++++.+ +.+.-.|+.++..+..... .-..+++.|+.+|.+.++.++..++..|..+
T Consensus 234 ~~l~~~l~s~~-----~~V~~e~~~~i~~l~~~~~--------------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l 294 (526)
T PF01602_consen 234 EPLLNLLQSSS-----PSVVYEAIRLIIKLSPSPE--------------LLQKAINPLIKLLSSSDPNVRYIALDSLSQL 294 (526)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHSSSHH--------------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccc-----cHHHHHHHHHHHHhhcchH--------------HHHhhHHHHHHHhhcccchhehhHHHHHHHh
Confidence 88888888653 7888888888887654321 2257899999999999999999999999999
Q ss_pred ccCCCchHHHHHHHHhcCCHHHHHHhhh-CCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChH
Q 003530 441 TSSPTTVLSVVSAIKSSGATISLVQFVE-APQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISK 519 (813)
Q Consensus 441 ~~~~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~ 519 (813)
+.... ..+. .....+..+. +++..+|..++.+|..++.. ..+ . ..++.|...+.+..+ .+
T Consensus 295 ~~~~~------~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~--~n~-~------~Il~eL~~~l~~~~d-~~ 355 (526)
T PF01602_consen 295 AQSNP------PAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLANE--SNV-K------EILDELLKYLSELSD-PD 355 (526)
T ss_dssp CCHCH------HHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--H--HHH-H------HHHHHHHHHHHHC---HH
T ss_pred hcccc------hhhh---hhhhhhheecCCCChhHHHHHHHHHhhcccc--cch-h------hHHHHHHHHHHhccc-hh
Confidence 88752 1111 2333344555 78889999999999999842 121 1 256667777744432 37
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhhhccccccCCccchhhhHhHHHHHHHHhccCCCChHHHHHHHH
Q 003530 520 EQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCE 599 (813)
Q Consensus 520 ~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~~ 599 (813)
.+..++..|+.++........+ .+..+++++... ...+...++..+..+... +++.+..+
T Consensus 356 ~~~~~i~~I~~la~~~~~~~~~-----~v~~l~~ll~~~----------~~~~~~~~~~~i~~ll~~---~~~~~~~~-- 415 (526)
T PF01602_consen 356 FRRELIKAIGDLAEKFPPDAEW-----YVDTLLKLLEIS----------GDYVSNEIINVIRDLLSN---NPELREKI-- 415 (526)
T ss_dssp HHHHHHHHHHHHHHHHGSSHHH-----HHHHHHHHHHCT----------GGGCHCHHHHHHHHHHHH---STTTHHHH--
T ss_pred hhhhHHHHHHHHHhccCchHHH-----HHHHHHHhhhhc----------cccccchHHHHHHHHhhc---ChhhhHHH--
Confidence 8888888887776422221111 345677777641 123445555566666543 55555433
Q ss_pred cCchHHHHHHHhcCCchHHHHHHHHHHhhhccccccccCCCCCCCCCCCcccccccccCCCCCCCCcccccccCccccch
Q 003530 600 HNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFC 679 (813)
Q Consensus 600 ~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~ls~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (813)
+..++.++.+-.++.+++.++|.++..+....+..
T Consensus 416 ---l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~------------------------------------------ 450 (526)
T PF01602_consen 416 ---LKKLIELLEDISSPEALAAAIWILGEYGELIENTE------------------------------------------ 450 (526)
T ss_dssp ---HHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT------------------------------------------
T ss_pred ---HHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccc------------------------------------------
Confidence 67778888875478899999999998876433200
Q ss_pred hhhccchHHHHHhhccCchhHHHHHHHHHHhhhhcCcchhhHHHHHHhhcCcHHHHHHHhh--cCChHHHHHHHHHHHHH
Q 003530 680 LLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLE--KRTENLQRRAVWVVERI 757 (813)
Q Consensus 680 l~~~gai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~~~~~v~~L~~ll~~--~~~~~~~~~a~~aL~~i 757 (813)
.....+..+++.....++.|+...+.++..+.......+ ... ..++.+..+. . +.+.++|++|...+.-+
T Consensus 451 -~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~-~~~-----~i~~~~~~~~-~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 451 -SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENE-VQN-----EILQFLLSLA-TEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp -HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTT-HHH-----HHHHHHHCHH-HHS-SSHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchh-hHH-----HHHHHHHHHh-ccCCCCHHHHHHHHHHHHHH
Confidence 012245566677777888999999999999885433110 001 1223344444 3 67999999998866544
No 32
>PRK09687 putative lyase; Provisional
Probab=99.46 E-value=1.2e-11 Score=127.88 Aligned_cols=254 Identities=15% Similarity=0.113 Sum_probs=197.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHHh
Q 003530 151 LIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIG 230 (813)
Q Consensus 151 ~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~ 230 (813)
-++.|+.+|.+.+..++..|+..|..+- ...+++.+..++.++++.+|..|+++|..+...+..
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~-----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRG-----------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcC-----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----
Confidence 3778999999999999999999998763 235678889999999999999999999998653322
Q ss_pred hhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchh
Q 003530 231 SINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDV 310 (813)
Q Consensus 231 ~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~ 310 (813)
...+++.|..++.. +.++.++..|+.+|.+++...... ..-+++.+...+.+.+..++..++.+|+.+..
T Consensus 88 -~~~a~~~L~~l~~~-D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~---- 157 (280)
T PRK09687 88 -QDNVFNILNNLALE-DKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND---- 157 (280)
T ss_pred -hHHHHHHHHHHHhc-CCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC----
Confidence 12467888877432 788999999999999985432211 11245567788888899999999999987632
Q ss_pred HHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHH
Q 003530 311 KVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANV 390 (813)
Q Consensus 311 ~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL 390 (813)
...++.|+.+|.+++..++..|+.+|..+....+ .+++.|+.+|.+. +..++..|+..|..+
T Consensus 158 -----~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~--------~~~~~L~~~L~D~-----~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 -----EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP--------DIREAFVAMLQDK-----NEEIRIEAIIGLALR 219 (280)
T ss_pred -----HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH--------HHHHHHHHHhcCC-----ChHHHHHHHHHHHcc
Confidence 1257999999999999999999999999843221 3578899999754 589999999999763
Q ss_pred HhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhh-C
Q 003530 391 VNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVE-A 469 (813)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~-~ 469 (813)
- ...+++.|++.|.+++ ++..++.+|..+... .+++.|..++. +
T Consensus 220 ~-------------------~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~--------------~a~p~L~~l~~~~ 264 (280)
T PRK09687 220 K-------------------DKRVLSVLIKELKKGT--VGDLIIEAAGELGDK--------------TLLPVLDTLLYKF 264 (280)
T ss_pred C-------------------ChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH--------------hHHHHHHHHHhhC
Confidence 2 2568999999998765 567788888777542 24788999997 7
Q ss_pred CChHHHHHHHHHHH
Q 003530 470 PQNDLRLASIELIQ 483 (813)
Q Consensus 470 ~~~~v~~~A~~~L~ 483 (813)
++.+++..|.+++.
T Consensus 265 ~d~~v~~~a~~a~~ 278 (280)
T PRK09687 265 DDNEIITKAIDKLK 278 (280)
T ss_pred CChhHHHHHHHHHh
Confidence 88899999988774
No 33
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1.3e-09 Score=125.59 Aligned_cols=548 Identities=17% Similarity=0.133 Sum_probs=338.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhc-cCcHHHHHHHHHHHHHhhcC------ch
Q 003530 152 IPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLS-HELSREREEAVSLLYELSKS------EA 224 (813)
Q Consensus 152 i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~ls~~------~~ 224 (813)
...|+.-|.++|.+++..|-..+.++.... ..++.|..++. +.++.+|.-|+-.++.+... .+
T Consensus 6 l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~----------~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e 75 (1075)
T KOG2171|consen 6 LEQLLQQLLSPDNEVRRQAEEALETLAKTE----------PLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAE 75 (1075)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhhccc----------chHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHH
Confidence 344555566788888999999998876643 27888999996 45788888888888888643 35
Q ss_pred hHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHh
Q 003530 225 LCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDL 304 (813)
Q Consensus 225 ~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L 304 (813)
.+..|-. ..|-.+.. ...+.++..-+.++..++.+.--- .=-++++.|++-.+++++..|+.+..+|+.+
T Consensus 76 ~~~siks-----~lL~~~~~--E~~~~vr~k~~dviAeia~~~l~e---~WPell~~L~q~~~S~~~~~rE~al~il~s~ 145 (1075)
T KOG2171|consen 76 VQQSIKS-----SLLEIIQS--ETEPSVRHKLADVIAEIARNDLPE---KWPELLQFLFQSTKSPNPSLRESALLILSSL 145 (1075)
T ss_pred HHHHHHH-----HHHHHHHh--ccchHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHhcCCCcchhHHHHHHHHhh
Confidence 5555532 12223333 466778888888888886542111 0025677888888999999999999999999
Q ss_pred cCC--chhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCCc-ccHHHHHH-cCChHHHHHHHhccCCCCCChhHH
Q 003530 305 ALN--SDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCE-PSAKVLIH-AGILPPLVKDLFTVGSNHLPMRLK 380 (813)
Q Consensus 305 ~~~--~~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~~ 380 (813)
... +..+..+.+- .+.+.+-+.+++..++..|++|+......- .++...-. ...+|.++..+..... ..+...-
T Consensus 146 ~~~~~~~~~~~~~~l-~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~-~~d~~~a 223 (1075)
T KOG2171|consen 146 PETFGNTLQPHLDDL-LRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQ-DGDDDAA 223 (1075)
T ss_pred hhhhccccchhHHHH-HHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhh-ccchHHH
Confidence 763 2233333221 355556666666669999999999988744 34444333 4467888888876431 1234445
Q ss_pred HHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcC--CChHHHHHHHHHHHHcccCCCchHHHHHHHHh--
Q 003530 381 EVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISN--TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKS-- 456 (813)
Q Consensus 381 ~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~--~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~-- 456 (813)
..+..+|..++...+..-. =.-..++..-+++..+ -++.+|..|+..|..++..... ..+....
T Consensus 224 ~~~l~~l~El~e~~pk~l~---------~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~---~~k~~~~~~ 291 (1075)
T KOG2171|consen 224 KSALEALIELLESEPKLLR---------PHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPA---MCKKLALLG 291 (1075)
T ss_pred HHHHHHHHHHHhhchHHHH---------HHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHH---Hhhhchhhh
Confidence 6677777777765542111 0002233333444443 4788999999999988877221 1111111
Q ss_pred cCCHHHHHHhhhCCCh----------------HHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHH
Q 003530 457 SGATISLVQFVEAPQN----------------DLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKE 520 (813)
Q Consensus 457 ~g~i~~Lv~lL~~~~~----------------~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~ 520 (813)
...++.++.++..... .-...|..+|-.++-+.+... +.. -.++.+-.++.+++- ..
T Consensus 292 ~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~---v~p--~~~~~l~~~l~S~~w--~~ 364 (1075)
T KOG2171|consen 292 HTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ---VLP--PLFEALEAMLQSTEW--KE 364 (1075)
T ss_pred ccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhh---ehH--HHHHHHHHHhcCCCH--HH
Confidence 1223334444332111 134677788888886655441 111 245667788888885 99
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhhhccccccCCccchhhhHhHHHHHHHHhccCCCChHHHHHHHHc
Q 003530 521 QAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEH 600 (813)
Q Consensus 521 ~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~~~ 600 (813)
|.+++.+|+.+..+..+...... ..+++.++..|.+ ..+.++-+|+.++..++..+ -|..++.. ..
T Consensus 365 R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~D----------phprVr~AA~naigQ~stdl--~p~iqk~~-~e 430 (1075)
T KOG2171|consen 365 RHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLND----------PHPRVRYAALNAIGQMSTDL--QPEIQKKH-HE 430 (1075)
T ss_pred HHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCC----------CCHHHHHHHHHHHHhhhhhh--cHHHHHHH-HH
Confidence 99999999999987776654432 2455666666665 35678888999999998653 45555443 35
Q ss_pred CchHHHHHHHhcCCchHHHHHHHHHHhhhccccccccCCCCCCCCCCCcccccccccCCCCCCCCcccccccCccccchh
Q 003530 601 NLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCL 680 (813)
Q Consensus 601 ~~i~~L~~lL~~~~~~~vk~~Aa~aL~~ls~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 680 (813)
-++|.|+..+.+..++.++.+||.+|-|++.....-.. .|
T Consensus 431 ~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l--------------------------~p-------------- 470 (1075)
T KOG2171|consen 431 RLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSIL--------------------------EP-------------- 470 (1075)
T ss_pred hccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHH--------------------------HH--------------
Confidence 67789999999887899999999999999876432100 00
Q ss_pred hhccchHHHH-HhhccCchhHHHHHHHHHHhhhhcCcchhhHHHHHHhhc-CcHHHHHHHhhcCChHHHHHHHHHHHHHH
Q 003530 681 LEGHAVEKLI-ALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQ-GIKPILDVLLEKRTENLQRRAVWVVERIL 758 (813)
Q Consensus 681 ~~~gai~~Lv-~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~~~~-~v~~L~~ll~~~~~~~~~~~a~~aL~~i~ 758 (813)
.=.+-+.+++ -++.++.+.|++.++.||+..+.... ...+.... -+|.|.+.|+...+.+.++-....++.+.
T Consensus 471 YLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~-----~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcis 545 (1075)
T KOG2171|consen 471 YLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ-----EKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLS 545 (1075)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh-----hhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHH
Confidence 0012333233 34558889999999999999986533 12222223 34567788853333566655444444443
Q ss_pred cc--hhhhhhhcCCCcchHHHHHHhhhc-------CchhHHHHHHHHHHhccc
Q 003530 759 RT--DDIAYEVSGDPNVSTALVDAFQHA-------DYRTRQIAERALKHIDKI 802 (813)
Q Consensus 759 ~~--~~~~~~~~~~~~~~~~Lv~~l~~~-------~~~~~~~Aa~~L~~l~~~ 802 (813)
-. .-..+++-.. ...|++++-.+ +...+.+-..+-++|.++
T Consensus 546 li~~AVGke~F~~~---a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~i 595 (1075)
T KOG2171|consen 546 LIARAVGKEKFLPL---AEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRI 595 (1075)
T ss_pred HHHHHhhhhhhhHh---HHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHH
Confidence 22 2222333322 24566665444 344555555555555443
No 34
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.44 E-value=3.9e-11 Score=145.09 Aligned_cols=277 Identities=16% Similarity=0.096 Sum_probs=219.4
Q ss_pred ccCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHh
Q 003530 148 NSELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCE 227 (813)
Q Consensus 148 ~~g~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~ 227 (813)
....++.|+..|.++++.+|..|+..|..+. ..++++.|+.+|++++..+|..|+.+|..+....
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~---- 683 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL---- 683 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----
Confidence 3456788999999999999999999998763 2457899999999999999999999998874311
Q ss_pred HHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 003530 228 KIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALN 307 (813)
Q Consensus 228 ~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 307 (813)
...+.|...|. +.++.++..|+.+|..+.. +-...|++.|.+.++.++..++.+|..+..
T Consensus 684 ------~~~~~L~~~L~--~~d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~- 743 (897)
T PRK13800 684 ------PPAPALRDHLG--SPDPVVRAAALDVLRALRA-----------GDAALFAAALGDPDHRVRIEAVRALVSVDD- 743 (897)
T ss_pred ------CchHHHHHHhc--CCCHHHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCCHHHHHHHHHHHhcccC-
Confidence 22356778888 7899999999999987632 334578889999999999999999987521
Q ss_pred chhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHH
Q 003530 308 SDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATIL 387 (813)
Q Consensus 308 ~~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L 387 (813)
.+.|..++.++++.++..++.+|..+.... ...++.|..++++. ++.++..|+.+|
T Consensus 744 -----------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~-----d~~VR~aA~~aL 799 (897)
T PRK13800 744 -----------VESVAGAATDENREVRIAVAKGLATLGAGG--------APAGDAVRALTGDP-----DPLVRAAALAAL 799 (897)
T ss_pred -----------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcCC-----CHHHHHHHHHHH
Confidence 345778899999999999999999986632 22478888888764 489999999999
Q ss_pred HHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhh
Q 003530 388 ANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFV 467 (813)
Q Consensus 388 ~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL 467 (813)
.++... ...+..++..|.+.++.+|..|+.+|..+... ..++.|+.+|
T Consensus 800 g~~g~~------------------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~--------------~a~~~L~~~L 847 (897)
T PRK13800 800 AELGCP------------------PDDVAAATAALRASAWQVRQGAARALAGAAAD--------------VAVPALVEAL 847 (897)
T ss_pred HhcCCc------------------chhHHHHHHHhcCCChHHHHHHHHHHHhcccc--------------chHHHHHHHh
Confidence 876331 12346688899999999999999999877432 2368999999
Q ss_pred hCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHh
Q 003530 468 EAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLA 529 (813)
Q Consensus 468 ~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~ 529 (813)
.+++..||..|+++|..+.. .. ...+.|...+++++. ++|..|..+|.
T Consensus 848 ~D~~~~VR~~A~~aL~~~~~--~~----------~a~~~L~~al~D~d~--~Vr~~A~~aL~ 895 (897)
T PRK13800 848 TDPHLDVRKAAVLALTRWPG--DP----------AARDALTTALTDSDA--DVRAYARRALA 895 (897)
T ss_pred cCCCHHHHHHHHHHHhccCC--CH----------HHHHHHHHHHhCCCH--HHHHHHHHHHh
Confidence 99999999999999988621 11 356778888988875 99999988875
No 35
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.1e-09 Score=126.05 Aligned_cols=452 Identities=15% Similarity=0.143 Sum_probs=304.3
Q ss_pred HHHHHHHHHHHhhcCCcccccccccCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhcc-----CcchhhhhhcCCCHHHHH
Q 003530 125 IMPALKYVQYFCQSSRSNKHVVHNSELIPMIIDMLK-SSSRKVRCTALETLRIVVEE-----DDDNKEILGQGDTVRTIV 198 (813)
Q Consensus 125 ~~~al~~l~~l~~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~~~~~al~~L~~L~~~-----~~~~~~~i~~~g~i~~Lv 198 (813)
..+|=+.++...+..+ ..+.|..++. +.++++|.-|+-.+++++.. +.+.|..|. ..|+
T Consensus 21 r~~Ae~~l~~~~~~~~----------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~sik-----s~lL 85 (1075)
T KOG2171|consen 21 RRQAEEALETLAKTEP----------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIK-----SSLL 85 (1075)
T ss_pred HHHHHHHHHHhhcccc----------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH-----HHHH
Confidence 4455566665554322 6888889886 56899999999999998764 223344442 2334
Q ss_pred HHh-ccCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCcc--HHHHHH
Q 003530 199 KFL-SHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENN--VRQMAE 275 (813)
Q Consensus 199 ~lL-~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~--~~~i~~ 275 (813)
... +...+.+|+.-+.++..++++.-.. +-++.++.|+..+. |.++..++.|..+|+.+...-.+ +..+.+
T Consensus 86 ~~~~~E~~~~vr~k~~dviAeia~~~l~e----~WPell~~L~q~~~--S~~~~~rE~al~il~s~~~~~~~~~~~~~~~ 159 (1075)
T KOG2171|consen 86 EIIQSETEPSVRHKLADVIAEIARNDLPE----KWPELLQFLFQSTK--SPNPSLRESALLILSSLPETFGNTLQPHLDD 159 (1075)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhcccc----chHHHHHHHHHHhc--CCCcchhHHHHHHHHhhhhhhccccchhHHH
Confidence 433 4455667888889999998765332 45789999999999 89999999999999998543222 222222
Q ss_pred cCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc-hhHHHHHhhh--HHHHHHHHh----cCCHHHHHHHHHHHHHhhCC-
Q 003530 276 NGRLQPLLTQILEGPQETKLSLAAFLGDLALNS-DVKVLVARTV--GSCLINIMK----SGNMQAREAALKALNQISSC- 347 (813)
Q Consensus 276 ~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g--i~~Lv~lL~----~~~~~~~~~a~~aL~~Ls~~- 347 (813)
..+.+.+-|.+++..+|..+++++..++... .++......+ +|.++..+. .++.+....+..+|-.|...
T Consensus 160 --l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~ 237 (1075)
T KOG2171|consen 160 --LLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESE 237 (1075)
T ss_pred --HHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhc
Confidence 3344555566666669999999999998744 4555444443 577777664 46677778888888888774
Q ss_pred cccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCC--
Q 003530 348 EPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNT-- 425 (813)
Q Consensus 348 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~-- 425 (813)
+..-...+.. +|..-+.+..+. +-+..+|..|+.+|..++...+...+. .. ..-.-.++.++.++...
T Consensus 238 pk~l~~~l~~-ii~~~l~Ia~n~---~l~~~~R~~ALe~ivs~~e~Ap~~~k~----~~--~~~~~lv~~~l~~mte~~~ 307 (1075)
T KOG2171|consen 238 PKLLRPHLSQ-IIQFSLEIAKNK---ELENSIRHLALEFLVSLSEYAPAMCKK----LA--LLGHTLVPVLLAMMTEEED 307 (1075)
T ss_pred hHHHHHHHHH-HHHHHHHHhhcc---cccHHHHHHHHHHHHHHHHhhHHHhhh----ch--hhhccHHHHHHHhcCCccc
Confidence 3333322222 455555555554 345899999999999998874432221 11 12234566666665421
Q ss_pred C--------------hHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCH
Q 003530 426 G--------------PTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGH 491 (813)
Q Consensus 426 ~--------------~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~ 491 (813)
+ ..-...|.++|-.++.+=.+ ..+...+ ++.+-.++.+++..-|.+|+.++..++...++
T Consensus 308 D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g-~~v~p~~-----~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~ 381 (1075)
T KOG2171|consen 308 DDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGG-KQVLPPL-----FEALEAMLQSTEWKERHAALLALSVIAEGCSD 381 (1075)
T ss_pred chhhccccccccccccCcHHHHHHHHHHHHhcCCh-hhehHHH-----HHHHHHHhcCCCHHHHHHHHHHHHHHHcccHH
Confidence 1 11334577788777766221 1222222 56777899999999999999999999987666
Q ss_pred HHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhhhccccccCCccchh
Q 003530 492 ELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTP 571 (813)
Q Consensus 492 ~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~ 571 (813)
.+...+. ..++..+..|+++++ .+|.+|+.+++.++.+-..-.+.-...-.++.|+..+.+.+ ...
T Consensus 382 ~m~~~l~---~Il~~Vl~~l~Dphp--rVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~---------~~r 447 (1075)
T KOG2171|consen 382 VMIGNLP---KILPIVLNGLNDPHP--RVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQ---------NVR 447 (1075)
T ss_pred HHHHHHH---HHHHHHHhhcCCCCH--HHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccC---------chH
Confidence 6655554 478888999999997 99999999999998866665566677778888998888732 346
Q ss_pred hhHhHHHHHHHHhccCCCChHHHHHHHHcCchH-HHHHHHhcCCchHHHHHHHHHHhhhcccc
Q 003530 572 FLEGLLSVLARVTFVLSDEPDAIALCCEHNLAA-LFIELLQSNGLDKVQMVSATALENLSLES 633 (813)
Q Consensus 572 ~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~~i~-~L~~lL~~~~~~~vk~~Aa~aL~~ls~~~ 633 (813)
++..++.+|.+|+.. .+.+...-.. .+++. .|..|++++ .+.+|..+..+|+..+...
T Consensus 448 V~ahAa~al~nf~E~--~~~~~l~pYL-d~lm~~~l~~L~~~~-~~~v~e~vvtaIasvA~AA 506 (1075)
T KOG2171|consen 448 VQAHAAAALVNFSEE--CDKSILEPYL-DGLMEKKLLLLLQSS-KPYVQEQAVTAIASVADAA 506 (1075)
T ss_pred HHHHHHHHHHHHHHh--CcHHHHHHHH-HHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHH
Confidence 788899999998854 2333333222 12333 444455566 8999999999999888654
No 36
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.42 E-value=5.8e-10 Score=128.93 Aligned_cols=473 Identities=14% Similarity=0.166 Sum_probs=326.4
Q ss_pred HHHHHhccC--cHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHH
Q 003530 196 TIVKFLSHE--LSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQM 273 (813)
Q Consensus 196 ~Lv~lL~~~--~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i 273 (813)
.+.+.+.+. +...+..++.-|..+...... ..-+.+.+++++. +.+...++-+--++..+...+.....+
T Consensus 8 el~~~~~~~~~~~~~~~~~l~kli~~~~~G~~------~~~~~~~vi~l~~--s~~~~~Krl~yl~l~~~~~~~~~~~~l 79 (526)
T PF01602_consen 8 ELAKILNSFKIDISKKKEALKKLIYLMMLGYD------ISFLFMEVIKLIS--SKDLELKRLGYLYLSLYLHEDPELLIL 79 (526)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHHHHHHHTT---------GSTHHHHHCTCS--SSSHHHHHHHHHHHHHHTTTSHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCC------CchHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhcchhHHHH
Confidence 355566655 555666555544444322211 1256788899998 899999988888887776544442222
Q ss_pred HHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCC-cccHH
Q 003530 274 AENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSC-EPSAK 352 (813)
Q Consensus 274 ~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~-~~~~~ 352 (813)
++..+.+-|.++++.++..|.++|.++.. + .+.+.-++.+.++|.++++.++..|+.++..+... ++...
T Consensus 80 ----~~n~l~kdl~~~n~~~~~lAL~~l~~i~~-~----~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~ 150 (526)
T PF01602_consen 80 ----IINSLQKDLNSPNPYIRGLALRTLSNIRT-P----EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVE 150 (526)
T ss_dssp ----HHHHHHHHHCSSSHHHHHHHHHHHHHH-S-H----HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHH
T ss_pred ----HHHHHHHhhcCCCHHHHHHHHhhhhhhcc-c----chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHH
Confidence 45678888999999999999999999873 2 23344468889999999999999999999999873 33221
Q ss_pred HHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHH
Q 003530 353 VLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECK 432 (813)
Q Consensus 353 ~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~ 432 (813)
.. .++.+..+|.+. ++.++..|+.++..+ ..++... .-.....+..|.+++...+|-.+..
T Consensus 151 ---~~-~~~~l~~lL~d~-----~~~V~~~a~~~l~~i-~~~~~~~---------~~~~~~~~~~L~~~l~~~~~~~q~~ 211 (526)
T PF01602_consen 151 ---DE-LIPKLKQLLSDK-----DPSVVSAALSLLSEI-KCNDDSY---------KSLIPKLIRILCQLLSDPDPWLQIK 211 (526)
T ss_dssp ---GG-HHHHHHHHTTHS-----SHHHHHHHHHHHHHH-HCTHHHH---------TTHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred ---HH-HHHHHhhhccCC-----cchhHHHHHHHHHHH-ccCcchh---------hhhHHHHHHHhhhcccccchHHHHH
Confidence 12 478899999654 488999999999888 2221110 0112345666666667889999999
Q ss_pred HHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhh
Q 003530 433 LLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVIS 512 (813)
Q Consensus 433 a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~ 512 (813)
+++.|..++..... .... ...++.+..++.+.++.+...+++++..+..... +.. .+++.|++++.
T Consensus 212 il~~l~~~~~~~~~---~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~--~~~~~L~~lL~ 277 (526)
T PF01602_consen 212 ILRLLRRYAPMEPE---DADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQ--KAINPLIKLLS 277 (526)
T ss_dssp HHHHHTTSTSSSHH---HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHH--HHHHHHHHHHT
T ss_pred HHHHHHhcccCChh---hhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHH--hhHHHHHHHhh
Confidence 99999998876542 1100 2348889999999999999999999998885321 222 57899999999
Q ss_pred cCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhhhccccccCCccchhhhHhHHHHHHHHhccCCCChH
Q 003530 513 ENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPD 592 (813)
Q Consensus 513 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~~ 592 (813)
+++. +++..++..|..+...+. ..+. .....+..+.. ..+..++..++..|..++ ++.
T Consensus 278 s~~~--nvr~~~L~~L~~l~~~~~---~~v~---~~~~~~~~l~~---------~~d~~Ir~~~l~lL~~l~-----~~~ 335 (526)
T PF01602_consen 278 SSDP--NVRYIALDSLSQLAQSNP---PAVF---NQSLILFFLLY---------DDDPSIRKKALDLLYKLA-----NES 335 (526)
T ss_dssp SSSH--HHHHHHHHHHHHHCCHCH---HHHG---THHHHHHHHHC---------SSSHHHHHHHHHHHHHH-------HH
T ss_pred cccc--hhehhHHHHHHHhhcccc---hhhh---hhhhhhheecC---------CCChhHHHHHHHHHhhcc-----ccc
Confidence 7774 899999999999988552 2222 22223334441 135678888999999988 666
Q ss_pred HHHHHHHcCchHHHHHHHhcCCchHHHHHHHHHHhhhccccccccCCCCCCCCCCCcccccccccCCCCCCCCccccccc
Q 003530 593 AIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLC 672 (813)
Q Consensus 593 ~~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~ls~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (813)
+.+. +++-|...+...+++.+++.++.+++.++.....
T Consensus 336 n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~------------------------------------- 373 (526)
T PF01602_consen 336 NVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP------------------------------------- 373 (526)
T ss_dssp HHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS-------------------------------------
T ss_pred chhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc-------------------------------------
Confidence 6554 4577778884332778999999999988764311
Q ss_pred CccccchhhhccchHHHHHhhccCchhHHHHHHHHHHhhhhcCcchhhHHHHHHhhcCcHHHHHHHhhcCChHHHHHHHH
Q 003530 673 SLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVW 752 (813)
Q Consensus 673 ~~~~~~~l~~~gai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~~a~~ 752 (813)
...-.+..+++++...++.+...+...+.++..+.... ....+..|.+.+.+-.++.+...++|
T Consensus 374 --------~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~--------~~~~l~~L~~~l~~~~~~~~~~~~~w 437 (526)
T PF01602_consen 374 --------DAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPEL--------REKILKKLIELLEDISSPEALAAAIW 437 (526)
T ss_dssp --------SHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTT--------HHHHHHHHHHHHTSSSSHHHHHHHHH
T ss_pred --------hHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhh--------hHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 01226788999999988999999999999998664422 11347788888865577889999999
Q ss_pred HHHHHHcchhhhhhhcCCCcchHHHHHHhhhcCchhHHHHHHHHHHhcc
Q 003530 753 VVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDK 801 (813)
Q Consensus 753 aL~~i~~~~~~~~~~~~~~~~~~~Lv~~l~~~~~~~~~~Aa~~L~~l~~ 801 (813)
+++.+....+... . .......+++.+...++.+|.....++..+..
T Consensus 438 ilGEy~~~~~~~~-~--~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~ 483 (526)
T PF01602_consen 438 ILGEYGELIENTE-S--APDILRSLIENFIEESPEVKLQILTALAKLFK 483 (526)
T ss_dssp HHHHHCHHHTTTT-H--HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred hhcccCCcccccc-c--HHHHHHHHHHhhccccHHHHHHHHHHHHHHHh
Confidence 9999985533200 0 01123567777777777888888888877765
No 37
>PTZ00429 beta-adaptin; Provisional
Probab=99.28 E-value=1.7e-07 Score=108.64 Aligned_cols=367 Identities=12% Similarity=0.079 Sum_probs=241.9
Q ss_pred CCCHHHHHHHhccCcHHHHHHHHH-HHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCcc
Q 003530 191 GDTVRTIVKFLSHELSREREEAVS-LLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENN 269 (813)
Q Consensus 191 ~g~i~~Lv~lL~~~~~~~~~~a~~-~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~ 269 (813)
.|-+..|-+.|.+.+...+..++. ++..++...+. ....+..++++. +.+.++++-..-.|.+.+.....
T Consensus 31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~Dv-------S~LF~dVvk~~~--S~d~elKKLvYLYL~~ya~~~pe 101 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDV-------SYLFVDVVKLAP--STDLELKKLVYLYVLSTARLQPE 101 (746)
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCc-------hHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcccChH
Confidence 456777788888887777777665 55565554332 234566777887 78999999888888887653322
Q ss_pred HHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCCcc
Q 003530 270 VRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEP 349 (813)
Q Consensus 270 ~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~ 349 (813)
...+ ++..+.+=+.+.++.+|..|.++|..+-.. .+.+..++++.+.|.+.++-++..|+-++.+|-...+
T Consensus 102 lalL----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p 172 (746)
T PTZ00429 102 KALL----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS-----SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM 172 (746)
T ss_pred HHHH----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc
Confidence 2212 356788888899999999999998887542 2444446788888999999999999999999876332
Q ss_pred cHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHH
Q 003530 350 SAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTI 429 (813)
Q Consensus 350 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~ 429 (813)
+.+.+.|.++.|.++|.+. ++.+..+|+.+|..+....+..- -.....+..|+..|..-++-.
T Consensus 173 --elv~~~~~~~~L~~LL~D~-----dp~Vv~nAl~aL~eI~~~~~~~l----------~l~~~~~~~Ll~~L~e~~EW~ 235 (746)
T PTZ00429 173 --QLFYQQDFKKDLVELLNDN-----NPVVASNAAAIVCEVNDYGSEKI----------ESSNEWVNRLVYHLPECNEWG 235 (746)
T ss_pred --ccccccchHHHHHHHhcCC-----CccHHHHHHHHHHHHHHhCchhh----------HHHHHHHHHHHHHhhcCChHH
Confidence 2334567888899988753 58999999999999976543221 123456777777777667777
Q ss_pred HHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHH
Q 003530 430 ECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIR 509 (813)
Q Consensus 430 ~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ 509 (813)
|-..+.+|.... |....+.. ..+..+...|.+.++.|...|++++..++.....+....+.. ..-.+|+.
T Consensus 236 Qi~IL~lL~~y~--P~~~~e~~------~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~--rl~~pLv~ 305 (746)
T PTZ00429 236 QLYILELLAAQR--PSDKESAE------TLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV--RVNTALLT 305 (746)
T ss_pred HHHHHHHHHhcC--CCCcHHHH------HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH--HHHHHHHH
Confidence 777877775533 22212221 237788888999999999999999999986543343333321 13366787
Q ss_pred hhhcCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhhhccccccCCccchhhhHhHHHHHHHHhccCCC
Q 003530 510 VISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSD 589 (813)
Q Consensus 510 ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~ 589 (813)
++. +++ ++|..++..|.-+....+.+ +... +..+.-...+ ...++...+.+|..++
T Consensus 306 L~s-s~~--eiqyvaLr~I~~i~~~~P~l----f~~~-~~~Ff~~~~D-----------p~yIK~~KLeIL~~La----- 361 (746)
T PTZ00429 306 LSR-RDA--ETQYIVCKNIHALLVIFPNL----LRTN-LDSFYVRYSD-----------PPFVKLEKLRLLLKLV----- 361 (746)
T ss_pred hhC-CCc--cHHHHHHHHHHHHHHHCHHH----HHHH-HHhhhcccCC-----------cHHHHHHHHHHHHHHc-----
Confidence 754 343 88888887765555433322 1111 2222111111 2345666777787777
Q ss_pred ChHHHHHHHHcCchHHHHHHHhcCCchHHHHHHHHHHhhhccc
Q 003530 590 EPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLE 632 (813)
Q Consensus 590 ~~~~~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~ls~~ 632 (813)
++++...+ +.-|.+...+. +...++.+..+++.++..
T Consensus 362 ne~Nv~~I-----L~EL~eYa~d~-D~ef~r~aIrAIg~lA~k 398 (746)
T PTZ00429 362 TPSVAPEI-----LKELAEYASGV-DMVFVVEVVRAIASLAIK 398 (746)
T ss_pred CcccHHHH-----HHHHHHHhhcC-CHHHHHHHHHHHHHHHHh
Confidence 44444333 23444555555 778888888888888754
No 38
>PTZ00429 beta-adaptin; Provisional
Probab=99.21 E-value=2.1e-06 Score=99.86 Aligned_cols=508 Identities=12% Similarity=0.089 Sum_probs=314.4
Q ss_pred cCcHHHHHHHhcCCCHHHHHHHHHHHH-HhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHh
Q 003530 149 SELIPMIIDMLKSSSRKVRCTALETLR-IVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCE 227 (813)
Q Consensus 149 ~g~i~~Lv~lL~s~~~~~~~~al~~L~-~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~ 227 (813)
.|=+..|-+.|.+.+...+..+++.+- .+..+. +. ....+..++++.+.+...++-.-..|.+.+......-
T Consensus 31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~-Dv------S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela 103 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGR-DV------SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA 103 (746)
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC-Cc------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH
Confidence 445666777788877777777776444 444443 21 2357778899999999999988888888876332111
Q ss_pred HHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 003530 228 KIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALN 307 (813)
Q Consensus 228 ~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 307 (813)
+ -++..|.+=+. +.|+.++..|+.+|.++-. ..|++ -.++++.+.|.+.++-||..|+-++.++...
T Consensus 104 -l----LaINtl~KDl~--d~Np~IRaLALRtLs~Ir~-----~~i~e-~l~~~lkk~L~D~~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 104 -L----LAVNTFLQDTT--NSSPVVRALAVRTMMCIRV-----SSVLE-YTLEPLRRAVADPDPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred -H----HHHHHHHHHcC--CCCHHHHHHHHHHHHcCCc-----HHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 1 24667777777 7899999999999987632 11222 2456777888899999999999999998653
Q ss_pred chhHHHHHhhh-HHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHH
Q 003530 308 SDVKVLVARTV-GSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATI 386 (813)
Q Consensus 308 ~~~~~~i~~~g-i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~ 386 (813)
+. ..+.+.+ ++.|.++|.+.++.+..+|+.+|..+.......- -...+.+..|+..|... ++-.+-..+.+
T Consensus 171 ~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~-----~EW~Qi~IL~l 242 (746)
T PTZ00429 171 DM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPEC-----NEWGQLYILEL 242 (746)
T ss_pred Cc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcC-----ChHHHHHHHHH
Confidence 22 2333444 6889999999999999999999999987533221 12233455666666542 24445455555
Q ss_pred HHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHh
Q 003530 387 LANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQF 466 (813)
Q Consensus 387 L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~l 466 (813)
|. ...+... -.....+..+...|++.++.+.-.|++++.++...... .....+. .....+|+.|
T Consensus 243 L~---~y~P~~~----------~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~--~~~~~~~-~rl~~pLv~L 306 (746)
T PTZ00429 243 LA---AQRPSDK----------ESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQ--ELIERCT-VRVNTALLTL 306 (746)
T ss_pred HH---hcCCCCc----------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCH--HHHHHHH-HHHHHHHHHh
Confidence 53 3222111 11246788888889999999999999999999865321 2222110 0112566766
Q ss_pred hhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcC
Q 003530 467 VEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEG 546 (813)
Q Consensus 467 L~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g 546 (813)
.++++++|..+++.+..+....+.-+.. -+..+.-.. +++ ..++...+.+|..|+. ..+... +
T Consensus 307 -~ss~~eiqyvaLr~I~~i~~~~P~lf~~-------~~~~Ff~~~--~Dp-~yIK~~KLeIL~~Lan-e~Nv~~-I---- 369 (746)
T PTZ00429 307 -SRRDAETQYIVCKNIHALLVIFPNLLRT-------NLDSFYVRY--SDP-PFVKLEKLRLLLKLVT-PSVAPE-I---- 369 (746)
T ss_pred -hCCCccHHHHHHHHHHHHHHHCHHHHHH-------HHHhhhccc--CCc-HHHHHHHHHHHHHHcC-cccHHH-H----
Confidence 4567899998887776666433322221 122222222 233 3789999999998876 223222 1
Q ss_pred cHHHHHHHhhhhccccccCCccchhhhHhHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHHhcCCchHHHHHHHHHH
Q 003530 547 AFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATAL 626 (813)
Q Consensus 547 ~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL 626 (813)
+..|.....+ .+.++...++.++.+++.. -+... ...+..|++++..+ .+ +...+...+
T Consensus 370 -L~EL~eYa~d----------~D~ef~r~aIrAIg~lA~k---~~~~a-----~~cV~~Ll~ll~~~-~~-~v~e~i~vi 428 (746)
T PTZ00429 370 -LKELAEYASG----------VDMVFVVEVVRAIASLAIK---VDSVA-----PDCANLLLQIVDRR-PE-LLPQVVTAA 428 (746)
T ss_pred -HHHHHHHhhc----------CCHHHHHHHHHHHHHHHHh---ChHHH-----HHHHHHHHHHhcCC-ch-hHHHHHHHH
Confidence 1333333332 3567888999999999854 33332 24567888888765 44 344677777
Q ss_pred hhhccccccccCCCCCCCCCCCcccccccccCCCCCCCCcccccccCccccchhhhccchHHHHHhh---ccCchhHHHH
Q 003530 627 ENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALL---DHTNEKVVEA 703 (813)
Q Consensus 627 ~~ls~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gai~~Lv~lL---~~~~~~v~~~ 703 (813)
.++.+.-++ ...++.|+..+ .-.+++.+.+
T Consensus 429 k~IlrkyP~-----------------------------------------------~~il~~L~~~~~~~~i~e~~AKaa 461 (746)
T PTZ00429 429 KDIVRKYPE-----------------------------------------------LLMLDTLVTDYGADEVVEEEAKVS 461 (746)
T ss_pred HHHHHHCcc-----------------------------------------------HHHHHHHHHhhcccccccHHHHHH
Confidence 777543211 01345555533 2367788888
Q ss_pred HHHHHHhhhhcCcchhhHHHHHHhhcCcHHHHHHHhhcCChHHHHHHHHHHHHHHcc-h-hhhhhhcCCCcchHHHHHHh
Q 003530 704 SLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT-D-DIAYEVSGDPNVSTALVDAF 781 (813)
Q Consensus 704 A~~AL~~L~~~~~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~~a~~aL~~i~~~-~-~~~~~~~~~~~~~~~Lv~~l 781 (813)
.++.|+.+... +. .+. ..+..++.-+. ..+..+|...+.+..+++-. + +... ....+.+.+
T Consensus 462 iiWILGEy~~~---I~-~a~-----~~L~~~i~~f~-~E~~~VqlqlLta~vKlfl~~p~~~~~-------~l~~vL~~~ 524 (746)
T PTZ00429 462 LLWMLGEYCDF---IE-NGK-----DIIQRFIDTIM-EHEQRVQLAILSAAVKMFLRDPQGMEP-------QLNRVLETV 524 (746)
T ss_pred HHHHHHhhHhh---Hh-hHH-----HHHHHHHhhhc-cCCHHHHHHHHHHHHHHHhcCcHHHHH-------HHHHHHHHH
Confidence 89999887632 11 111 12222333332 46678888888888888843 2 2211 112334332
Q ss_pred --hhcCchhHHHHHHHHHHhccc
Q 003530 782 --QHADYRTRQIAERALKHIDKI 802 (813)
Q Consensus 782 --~~~~~~~~~~Aa~~L~~l~~~ 802 (813)
.+.|+++|.+|-...+-|+..
T Consensus 525 t~~~~d~DVRDRA~~Y~rLLs~~ 547 (746)
T PTZ00429 525 TTHSDDPDVRDRAFAYWRLLSKG 547 (746)
T ss_pred HhcCCChhHHHHHHHHHHHHcCC
Confidence 357789999999888877653
No 39
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.19 E-value=9.2e-12 Score=87.50 Aligned_cols=42 Identities=36% Similarity=0.759 Sum_probs=31.8
Q ss_pred cccccccCCCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCC
Q 003530 35 CPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLT 78 (813)
Q Consensus 35 Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t 78 (813)
||||.++|+|||+++|||+||+.||.+|+++.. +....||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~--~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPS--GSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSS--SST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccC--CcCCCCcCC
Confidence 899999999999999999999999999998621 111689986
No 40
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=4.3e-08 Score=106.02 Aligned_cols=352 Identities=16% Similarity=0.158 Sum_probs=234.2
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhc----CCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchh
Q 003530 150 ELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQ----GDTVRTIVKFLSHELSREREEAVSLLYELSKSEAL 225 (813)
Q Consensus 150 g~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~----~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 225 (813)
.+.|.|..+|.+.+...++.|..+|.+++.++.+.-..=+. .-.+|.++++.++.++..|..|+..+........-
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q 207 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ 207 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH
Confidence 46889999999999999999999999999886543222111 12489999999999999999999988766543221
Q ss_pred HhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHH--cCChHHHHHHHccCCHHHHHHHHHHHHH
Q 003530 226 CEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAE--NGRLQPLLTQILEGPQETKLSLAAFLGD 303 (813)
Q Consensus 226 ~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~--~G~i~~Lv~lL~~~~~~~~~~a~~~L~~ 303 (813)
..+......++.|..+-. +++++++++.+.+|..|-.... .+++- .++|+.+++.-++.++++...|+.....
T Consensus 208 -al~~~iD~Fle~lFalan--D~~~eVRk~vC~alv~Llevr~--dkl~phl~~IveyML~~tqd~dE~VALEACEFwla 282 (885)
T KOG2023|consen 208 -ALYVHIDKFLEILFALAN--DEDPEVRKNVCRALVFLLEVRP--DKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLA 282 (885)
T ss_pred -HHHHHHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHHhcH--HhcccchHHHHHHHHHHccCcchhHHHHHHHHHHH
Confidence 112223457788888887 8999999999999998843221 12221 2577888888888899999999999999
Q ss_pred hcCCchhHHHHHhh---hHHHHHHHH----------hcCCH---------------------------------------
Q 003530 304 LALNSDVKVLVART---VGSCLINIM----------KSGNM--------------------------------------- 331 (813)
Q Consensus 304 L~~~~~~~~~i~~~---gi~~Lv~lL----------~~~~~--------------------------------------- 331 (813)
++..+-.+..+... -+|.|++-+ .+..+
T Consensus 283 ~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD 362 (885)
T KOG2023|consen 283 LAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD 362 (885)
T ss_pred HhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence 99888667666654 257776532 20000
Q ss_pred -------HHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCC
Q 003530 332 -------QAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGP 404 (813)
Q Consensus 332 -------~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~ 404 (813)
.++..++.+|--|+. +.....++.++-+|+.+-. +..-.+||.+.-+|..++.+.-..-
T Consensus 363 dD~~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~L~-~~~W~vrEagvLAlGAIAEGcM~g~------ 428 (885)
T KOG2023|consen 363 DDAFSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEHLS-SEEWKVREAGVLALGAIAEGCMQGF------ 428 (885)
T ss_pred ccccccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHHcC-cchhhhhhhhHHHHHHHHHHHhhhc------
Confidence 123333333333333 2233455666666654321 1246788888888888876542110
Q ss_pred CCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccC--CCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHH
Q 003530 405 DNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSS--PTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELI 482 (813)
Q Consensus 405 ~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L 482 (813)
.-.-...+|-|+.+|.+..|-+|...+++|...+.. .....+.... .+..|+..+-+++.+||++|+.++
T Consensus 429 ---~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~p-----vL~~ll~~llD~NK~VQEAAcsAf 500 (885)
T KOG2023|consen 429 ---VPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKP-----VLEGLLRRLLDSNKKVQEAACSAF 500 (885)
T ss_pred ---ccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHH-----HHHHHHHHHhcccHHHHHHHHHHH
Confidence 001135788999999999999999999999887765 1111122222 256677777789999999999999
Q ss_pred HHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCC-ChHHHHHHHHHHhcC
Q 003530 483 QNLSPHMGHELADALRGAVGQLGSLIRVISENVG-ISKEQAAAVGLLAEL 531 (813)
Q Consensus 483 ~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~-~~~~~~~a~~~L~~L 531 (813)
..+-...+.+....+. ..+..|+..++.-.. .--+...|.+.|+.-
T Consensus 501 AtleE~A~~eLVp~l~---~IL~~l~~af~kYQ~KNLlILYDAIgtlAds 547 (885)
T KOG2023|consen 501 ATLEEEAGEELVPYLE---YILDQLVFAFGKYQKKNLLILYDAIGTLADS 547 (885)
T ss_pred HHHHHhccchhHHHHH---HHHHHHHHHHHHHhhcceehHHHHHHHHHHH
Confidence 9988666777665544 345666666543222 124555677777643
No 41
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.13 E-value=5.9e-10 Score=100.76 Aligned_cols=117 Identities=22% Similarity=0.224 Sum_probs=106.5
Q ss_pred ccccCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchh
Q 003530 146 VHNSELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSEAL 225 (813)
Q Consensus 146 i~~~g~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 225 (813)
+.+.|+++.|+++|.+++..++..++.+|.+++...++.+..+.+.|+++.++.+|.++++.++..++++|++++.+...
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 56789999999999999999999999999999999888999999999999999999999999999999999999988855
Q ss_pred HhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhc
Q 003530 226 CEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLE 264 (813)
Q Consensus 226 ~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~ 264 (813)
........|+++.|++++. +.+.++++.++.+|.+|+
T Consensus 83 ~~~~~~~~g~l~~l~~~l~--~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLD--SSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHCCChHHHHHHHh--cCCHHHHHHHHHHHHHhh
Confidence 5444446799999999999 678999999999999986
No 42
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=6e-08 Score=107.65 Aligned_cols=395 Identities=14% Similarity=0.159 Sum_probs=264.2
Q ss_pred HhhhccCCCCcccHHHHHHHHHH-HhhcCCcccccccccCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCcchhhhhh
Q 003530 112 ARKSLNLGSSESDIMPALKYVQY-FCQSSRSNKHVVHNSELIPMIIDMLKS-SSRKVRCTALETLRIVVEEDDDNKEILG 189 (813)
Q Consensus 112 ~~~~l~~~~~~~~~~~al~~l~~-l~~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~~~~~al~~L~~L~~~~~~~~~~i~ 189 (813)
+..-+...+++..+.+++.+|-+ +...+++.-.-+.-.-.||.|+.+|+. .+.++...|+++|.+|+.--+.....++
T Consensus 172 LL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV 251 (1051)
T KOG0168|consen 172 LLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVV 251 (1051)
T ss_pred HHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheee
Confidence 34444544566677788877644 344454443344445679999999975 5799999999999999998888999999
Q ss_pred cCCCHHHHHHH-hccCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccC--
Q 003530 190 QGDTVRTIVKF-LSHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKC-- 266 (813)
Q Consensus 190 ~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~-- 266 (813)
+.++||.|+.- +.-...++-++++.+|-.++... .+.|.+ .|+|-..+..|. -=...+|+.|+.+..|+|..
T Consensus 252 ~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~-AG~l~a~LsylD--FFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 252 DEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQ-AGALSAVLSYLD--FFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred cccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHh-cccHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999854 45666788899999999998743 344553 699988888886 34567899999999999753
Q ss_pred CccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCC----chhHHHHHhhh-HHHHHHHHhcC----CHHHHHHH
Q 003530 267 ENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALN----SDVKVLVARTV-GSCLINIMKSG----NMQAREAA 337 (813)
Q Consensus 267 ~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~----~~~~~~i~~~g-i~~Lv~lL~~~----~~~~~~~a 337 (813)
++.-.-+++ .+|.|-.+|...+....+.++-++..++.. ++--+.+...| +....++|.-. +..+....
T Consensus 327 sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~v 404 (1051)
T KOG0168|consen 327 SDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGV 404 (1051)
T ss_pred CccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHH
Confidence 344444555 789999999988888888888777777653 22234555566 56667776532 23456677
Q ss_pred HHHHHHhhCC-cccHHHHHHcCChHHHHHHHhccCCC----------CCChhHHHHHHHHHHHHHhcCCC----------
Q 003530 338 LKALNQISSC-EPSAKVLIHAGILPPLVKDLFTVGSN----------HLPMRLKEVSATILANVVNSGHD---------- 396 (813)
Q Consensus 338 ~~aL~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~----------~~~~~~~~~a~~~L~nL~~~~~~---------- 396 (813)
++.|..+|+. +.....+.+.++...|..+|...+.. -.+.++-+.-.-+..-|-..+.+
T Consensus 405 Irmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~ 484 (1051)
T KOG0168|consen 405 IRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLI 484 (1051)
T ss_pred HHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhh
Confidence 7888888885 77788888888888888888765421 00111111111111100000000
Q ss_pred --------------------Ccc-------------------------cccCCCCccccc---------hhhHHHHHHhh
Q 003530 397 --------------------FDS-------------------------ITVGPDNQTLVS---------EDIVHNLLHLI 422 (813)
Q Consensus 397 --------------------~~~-------------------------~~~~~~~~~l~~---------~~~v~~Lv~lL 422 (813)
|.. ...+.....+.+ ...+|.|++..
T Consensus 485 ~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~llpVLveVY 564 (1051)
T KOG0168|consen 485 YEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGKDLLPVLVEVY 564 (1051)
T ss_pred cccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 000 000000011111 23567788887
Q ss_pred c-CCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhccc
Q 003530 423 S-NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAV 501 (813)
Q Consensus 423 ~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~ 501 (813)
. +.++.++.+++.+|..+..... .+.++..+.....-..+..+|.+.+..+...|+...-.|....++.+...++..
T Consensus 565 sSsA~~~VR~kcL~Ailrlvy~s~-seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~RE- 642 (1051)
T KOG0168|consen 565 SSSANPDVRYKCLSAILRLVYFSN-SELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRRE- 642 (1051)
T ss_pred hccCCchhhHHHHHHHHHHHhhCC-HHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhh-
Confidence 7 4689999999999999877654 245555555556666788899999999888888877777766777777777776
Q ss_pred ccHHHHHHhhhcCC
Q 003530 502 GQLGSLIRVISENV 515 (813)
Q Consensus 502 g~i~~Lv~ll~~~~ 515 (813)
|.+...-++....+
T Consensus 643 GV~~~v~~L~~~~~ 656 (1051)
T KOG0168|consen 643 GVFHAVKQLSVDSN 656 (1051)
T ss_pred hHHHHHHHHhccCC
Confidence 55555445544343
No 43
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.08 E-value=1.7e-09 Score=97.67 Aligned_cols=116 Identities=22% Similarity=0.207 Sum_probs=104.1
Q ss_pred hhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcC-chhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhcc
Q 003530 187 ILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKS-EALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEK 265 (813)
Q Consensus 187 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~ 265 (813)
.+.+.|+++.|+.+|.+++...+..++.+|.+++.+ ++.+..+. ..|+++.|+.++. ++++.++..++++|.+++.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~~i~~l~~~l~--~~~~~v~~~a~~~L~~l~~ 78 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVV-EAGGLPALVQLLK--SEDEEVVKAALWALRNLAA 78 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHH-HCCChHHHHHHHh--CCCHHHHHHHHHHHHHHcc
Confidence 456789999999999999999999999999999988 67777776 4699999999999 7899999999999999987
Q ss_pred CC-ccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhc
Q 003530 266 CE-NNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLA 305 (813)
Q Consensus 266 ~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~ 305 (813)
+. .....+.+.|+++.|+++|.+++..+++.++.+|.+|+
T Consensus 79 ~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 79 GPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred CcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 66 45667788999999999999999999999999999986
No 44
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.07 E-value=1.4e-10 Score=108.51 Aligned_cols=66 Identities=24% Similarity=0.453 Sum_probs=52.9
Q ss_pred CCCCCceecccccccCCCceecCCCchhcHHHHHHHHHHhhh----------CCCCCCCCCCCcCCCCCCCcccHh
Q 003530 27 EPIYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRE----------NGRKPVCPLTQKELRSTDLNPSIA 92 (813)
Q Consensus 27 ~~~~~~~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~----------~~~~~~CP~t~~~l~~~~l~pn~~ 92 (813)
.+..++|.||||.+.++|||+++|||.||+.||.+|+..+.. .+....||+|+..+....+.|...
T Consensus 13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 445577999999999999999999999999999999864210 112368999999988777877643
No 45
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=1.4e-06 Score=96.38 Aligned_cols=351 Identities=17% Similarity=0.184 Sum_probs=242.4
Q ss_pred hHHHHHHHHHhhhhhhhhhHhhhccCCCCcccHHHHHHHHHHHhhcCCcccccccccCcHHHHHHHhcC--CCHHHHHHH
Q 003530 93 LRNTIEEWNARNEAAQLDMARKSLNLGSSESDIMPALKYVQYFCQSSRSNKHVVHNSELIPMIIDMLKS--SSRKVRCTA 170 (813)
Q Consensus 93 l~~~I~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~l~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s--~~~~~~~~a 170 (813)
-.+.|+..|.|-. ++.-.++...|++.|+.++++ .|..+ .+.|.++|++.|.. .|++....+
T Consensus 20 ~aETI~kLcDRve------------ssTL~eDRR~A~rgLKa~srk---YR~~V-ga~Gmk~li~vL~~D~~D~E~ik~~ 83 (970)
T KOG0946|consen 20 AAETIEKLCDRVE------------SSTLLEDRRDAVRGLKAFSRK---YREEV-GAQGMKPLIQVLQRDYMDPEIIKYA 83 (970)
T ss_pred HHhHHHHHHHHHh------------hccchhhHHHHHHHHHHHHHH---HHHHH-HHcccHHHHHHHhhccCCHHHHHHH
Confidence 4566777776633 233345777788888888764 24333 45568889999964 489999999
Q ss_pred HHHHHHhhccCc------chh-----------hhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcC--chhHhHHhh
Q 003530 171 LETLRIVVEEDD------DNK-----------EILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKS--EALCEKIGS 231 (813)
Q Consensus 171 l~~L~~L~~~~~------~~~-----------~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~ 231 (813)
+..+.++..+++ +.+ ..|...+.|..|+..+...|-.+|..++.+|..+-.. .+.+..+..
T Consensus 84 LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~ 163 (970)
T KOG0946|consen 84 LDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLV 163 (970)
T ss_pred HHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999977653 222 1244568899999999999999999999999988654 477888888
Q ss_pred hhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHH-cCChHHHHHHHccC----CHHHHHHHHHHHHHhcC
Q 003530 232 INGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAE-NGRLQPLLTQILEG----PQETKLSLAAFLGDLAL 306 (813)
Q Consensus 232 ~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~G~i~~Lv~lL~~~----~~~~~~~a~~~L~~L~~ 306 (813)
.+-||..|+.+|. +..+-++..++-.|..|..+..+..+++. .++++.|..++... ..-+.+.+...|.||-.
T Consensus 164 ~P~gIS~lmdlL~--DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK 241 (970)
T KOG0946|consen 164 SPMGISKLMDLLR--DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLK 241 (970)
T ss_pred CchhHHHHHHHHh--hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHh
Confidence 8999999999999 66777888899999999988777777664 48999999999764 23577889999999988
Q ss_pred C-chhHHHHHhhh-HHHHHHHHhc---CCH--------HH--HHHHHHHHHHhhC--C-----cccHHHHHHcCChHHHH
Q 003530 307 N-SDVKVLVARTV-GSCLINIMKS---GNM--------QA--REAALKALNQISS--C-----EPSAKVLIHAGILPPLV 364 (813)
Q Consensus 307 ~-~~~~~~i~~~g-i~~Lv~lL~~---~~~--------~~--~~~a~~aL~~Ls~--~-----~~~~~~i~~~g~i~~Lv 364 (813)
+ ..|+..+.+.+ ||.|.++|.- ++. ++ ...++.++..|.. + ..|...+...+++..|.
T Consensus 242 ~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc 321 (970)
T KOG0946|consen 242 NNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLC 321 (970)
T ss_pred hCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHH
Confidence 5 46888888887 8999988753 231 11 2334444444433 1 13556788899999999
Q ss_pred HHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCcccc--chhhHHHHHHhhcC-CChHHHHHHHHHHHHcc
Q 003530 365 KDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLV--SEDIVHNLLHLISN-TGPTIECKLLQVLVGLT 441 (813)
Q Consensus 365 ~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~--~~~~v~~Lv~lL~~-~~~~~~~~a~~~L~~L~ 441 (813)
.++.+.+ .+.+++-.+.-++++..+++...+..-.+-.-..+- ....+-.++.+..+ ..+..|..+.+++....
T Consensus 322 ~il~~~~---vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l 398 (970)
T KOG0946|consen 322 TILMHPG---VPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYL 398 (970)
T ss_pred HHHcCCC---CcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 9998763 467888888888888887665443210000000000 11223334444443 46788888888887776
Q ss_pred cCCCchHHHHHHHHhcCCHHHHHHhhhCCCh
Q 003530 442 SSPTTVLSVVSAIKSSGATISLVQFVEAPQN 472 (813)
Q Consensus 442 ~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 472 (813)
.++. +....+ +..+++.-.++..
T Consensus 399 ~dN~---~gq~~~-----l~tllp~~~nst~ 421 (970)
T KOG0946|consen 399 YDND---DGQRKF-----LKTLLPSSTNSTS 421 (970)
T ss_pred hcch---hhHHHH-----HHHHhhhhccccc
Confidence 6654 233322 4555555554444
No 46
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.04 E-value=1.4e-07 Score=101.72 Aligned_cols=330 Identities=13% Similarity=0.122 Sum_probs=225.6
Q ss_pred CcHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCcchhhhhhc-----CCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCc
Q 003530 150 ELIPMIIDMLK-SSSRKVRCTALETLRIVVEEDDDNKEILGQ-----GDTVRTIVKFLSHELSREREEAVSLLYELSKSE 223 (813)
Q Consensus 150 g~i~~Lv~lL~-s~~~~~~~~al~~L~~L~~~~~~~~~~i~~-----~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~ 223 (813)
..+..++.+|+ .+..++....+..+..+..+++..-..+.+ .....+++++|.++|.-+...|...|..+....
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 46677888886 456788888888888888776544444444 356778889999998889999999999886543
Q ss_pred hhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccC--CHHHHHHHHHHH
Q 003530 224 ALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEG--PQETKLSLAAFL 301 (813)
Q Consensus 224 ~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~--~~~~~~~a~~~L 301 (813)
.....-....-.+.-|...|.. ..+...+.-++.+|..|-..++.|..+.+.+++++|+.+|+.. +..++.+++-++
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~-~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNN-ITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhc-cCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 2111100011133355566653 2457778888999999999999999999999999999999864 457888999999
Q ss_pred HHhcCCchhHHHHHhhh-HHHHHHHHhc-CCHHHHHHHHHHHHHhhCCc-------ccHHHHHHcCChHHHHHHHhccCC
Q 003530 302 GDLALNSDVKVLVARTV-GSCLINIMKS-GNMQAREAALKALNQISSCE-------PSAKVLIHAGILPPLVKDLFTVGS 372 (813)
Q Consensus 302 ~~L~~~~~~~~~i~~~g-i~~Lv~lL~~-~~~~~~~~a~~aL~~Ls~~~-------~~~~~i~~~g~i~~Lv~lL~~~~~ 372 (813)
|-|+.+++........+ ++.|+++++. ..+++.+-++.+|.||...+ .....|++.|++ +++..|....-
T Consensus 212 WlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~-~~l~~L~~rk~ 290 (429)
T cd00256 212 WLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVL-KTLQSLEQRKY 290 (429)
T ss_pred HHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChH-HHHHHHhcCCC
Confidence 99999887666666666 7999999975 57789999999999998843 233456666654 46666665442
Q ss_pred CCCChhHHHHHHHHHHHHHh---cCCCCcc------------cccCCCC-------ccccc--hhhHHHHHHhhc-CCCh
Q 003530 373 NHLPMRLKEVSATILANVVN---SGHDFDS------------ITVGPDN-------QTLVS--EDIVHNLLHLIS-NTGP 427 (813)
Q Consensus 373 ~~~~~~~~~~a~~~L~nL~~---~~~~~~~------------~~~~~~~-------~~l~~--~~~v~~Lv~lL~-~~~~ 427 (813)
.++++.+.-..+-..|-. .-..+.+ -+++.+. ..+.+ -..+..|+++|. +.+|
T Consensus 291 --~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~ 368 (429)
T cd00256 291 --DDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDP 368 (429)
T ss_pred --CcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCc
Confidence 234544433222211111 0000000 0111110 11111 235678888985 6678
Q ss_pred HHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhC
Q 003530 428 TIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLS 486 (813)
Q Consensus 428 ~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls 486 (813)
.+..-|+.=+..++.+.. .-+..+.+-|+=..+++++.+++++||..|..++..|.
T Consensus 369 ~~laVAc~Dige~vr~~P---~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 369 IILAVACHDIGEYVRHYP---RGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred ceeehhhhhHHHHHHHCc---cHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 888888888888887743 23455667799999999999999999999999887664
No 47
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.98 E-value=1.8e-10 Score=86.43 Aligned_cols=48 Identities=38% Similarity=0.654 Sum_probs=33.8
Q ss_pred CCCceecccccccCCCcee-cCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCc
Q 003530 29 IYDAFVCPLTKQVMRDPVT-LENGQTFEREAIEKWFKECRENGRKPVCPLTQK 80 (813)
Q Consensus 29 ~~~~~~Cpi~~~~m~dpv~-~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~ 80 (813)
.-..++||||+++|+|||. ..|||+|+|.+|.+|+.. ++. ..||+.|.
T Consensus 8 ~~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~---~~~-~~CPv~GC 56 (57)
T PF11789_consen 8 GTISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQR---NGS-KRCPVAGC 56 (57)
T ss_dssp SB--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTT---TS--EE-SCCC-
T ss_pred cEeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHh---cCC-CCCCCCCC
Confidence 3456999999999999998 699999999999999943 343 78999774
No 48
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.97 E-value=6e-10 Score=117.86 Aligned_cols=70 Identities=20% Similarity=0.410 Sum_probs=62.5
Q ss_pred CCCceecccccccCCCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCcccHhhHHHHHHHHHhh
Q 003530 29 IYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNPSIALRNTIEEWNARN 104 (813)
Q Consensus 29 ~~~~~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~~~~~~ 104 (813)
....|+||||.++|.+||+++|||+||+.||..|+.. ...||.|+..+....+.+|..+.++|+.|....
T Consensus 23 Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~------~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R 92 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN------QPKCPLCRAEDQESKLRSNWLVSEIVESFKNLR 92 (397)
T ss_pred cccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC------CCCCCCCCCccccccCccchHHHHHHHHHHHhh
Confidence 3466999999999999999999999999999999975 367999999887778999999999999997644
No 49
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.89 E-value=6.2e-08 Score=103.09 Aligned_cols=228 Identities=17% Similarity=0.148 Sum_probs=163.9
Q ss_pred cHHHHHHHhc--CCCHHHHHHHHHHHHHhhccCcchhhhhhc------CCCHHHHHHHhccCcHHHHHHHHHHHHHhhcC
Q 003530 151 LIPMIIDMLK--SSSRKVRCTALETLRIVVEEDDDNKEILGQ------GDTVRTIVKFLSHELSREREEAVSLLYELSKS 222 (813)
Q Consensus 151 ~i~~Lv~lL~--s~~~~~~~~al~~L~~L~~~~~~~~~~i~~------~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~ 222 (813)
.+..++.+|+ +++.++....+..+..+..+++...+.+.. .....++++++.++|..++..|+..|..+...
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 3566777775 368899999999999999888766665554 22678899999999999999999999999876
Q ss_pred chhHhHHhhhhchHHHHHHhcccC--CCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHH-----cc--CCHHH
Q 003530 223 EALCEKIGSINGAILILVGMTSSK--SENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQI-----LE--GPQET 293 (813)
Q Consensus 223 ~~~~~~i~~~~g~i~~Lv~lL~~~--s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL-----~~--~~~~~ 293 (813)
...+..-.. .+.++.++..+... +.+.+.+..++.+|.+|...++.+..+.+.|+++.|+.+| .+ .+..+
T Consensus 136 ~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 136 GPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 654444321 46778888877631 2345567899999999999999999999999999999999 22 25678
Q ss_pred HHHHHHHHHHhcCCchhHHHHHhhh-HHHHHHHHhc-CCHHHHHHHHHHHHHhhCCcc--cHHHHHHcCChHHHHHHHhc
Q 003530 294 KLSLAAFLGDLALNSDVKVLVARTV-GSCLINIMKS-GNMQAREAALKALNQISSCEP--SAKVLIHAGILPPLVKDLFT 369 (813)
Q Consensus 294 ~~~a~~~L~~L~~~~~~~~~i~~~g-i~~Lv~lL~~-~~~~~~~~a~~aL~~Ls~~~~--~~~~i~~~g~i~~Lv~lL~~ 369 (813)
+.+++-++|.|+.+++....+...+ ++.|+++++. ..+++.+-++.+|.||..... +...|+..|+++.+-.+...
T Consensus 215 ~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~r 294 (312)
T PF03224_consen 215 QYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSER 294 (312)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS
T ss_pred HHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcC
Confidence 8899999999999999888888877 7999999975 688999999999999999765 88888888776655554443
Q ss_pred cCCCCCChhHHHH
Q 003530 370 VGSNHLPMRLKEV 382 (813)
Q Consensus 370 ~~~~~~~~~~~~~ 382 (813)
. -.++++.+.
T Consensus 295 -k--~~Dedl~ed 304 (312)
T PF03224_consen 295 -K--WSDEDLTED 304 (312)
T ss_dssp -----SSHHHHHH
T ss_pred -C--CCCHHHHHH
Confidence 3 234666554
No 50
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.5e-06 Score=96.81 Aligned_cols=224 Identities=12% Similarity=0.133 Sum_probs=179.0
Q ss_pred HhhhHHHHHHHHhc-CCHHHHHHHHHHHHHhhC-CcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHh
Q 003530 315 ARTVGSCLINIMKS-GNMQAREAALKALNQISS-CEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVN 392 (813)
Q Consensus 315 ~~~gi~~Lv~lL~~-~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~ 392 (813)
.+.-+|.|+.+|+. .+.++.-.|++||.+||. .|.....+++.++||.|+.-|..-. -.++-|.++.+|-.|++
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~Ie----yiDvAEQ~LqALE~iSR 284 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIE----YIDVAEQSLQALEKISR 284 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhh----hhHHHHHHHHHHHHHHh
Confidence 33447999999976 478999999999999998 7889999999999999999887642 47899999999999987
Q ss_pred cCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCCh
Q 003530 393 SGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQN 472 (813)
Q Consensus 393 ~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 472 (813)
..+ ..+...|++...+..|.--+...|+.|+.+..|+|++-.. ++....+ ..+|.|-.+|...+.
T Consensus 285 ~H~-----------~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~s-d~f~~v~---ealPlL~~lLs~~D~ 349 (1051)
T KOG0168|consen 285 RHP-----------KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRS-DEFHFVM---EALPLLTPLLSYQDK 349 (1051)
T ss_pred hcc-----------HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccchHHH---HHHHHHHHHHhhccc
Confidence 543 2466789999998888877888999999999999987211 1111111 458999999999999
Q ss_pred HHHHHHHHHHHHhCCC--CCHHHHHHHhcccccHHHHHHhhhcCCC--ChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcH
Q 003530 473 DLRLASIELIQNLSPH--MGHELADALRGAVGQLGSLIRVISENVG--ISKEQAAAVGLLAELPERDLGLTRQMLDEGAF 548 (813)
Q Consensus 473 ~v~~~A~~~L~~Ls~~--~~~~~~~~l~~~~g~i~~Lv~ll~~~~~--~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v 548 (813)
+..+.++.++..++.. ...+.-+.+... |.|....+++.-... ...+.......|+.++++.+...+.+.+.++.
T Consensus 350 k~ies~~ic~~ri~d~f~h~~~kLdql~s~-dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~ 428 (1051)
T KOG0168|consen 350 KPIESVCICLTRIADGFQHGPDKLDQLCSH-DLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIA 428 (1051)
T ss_pred hhHHHHHHHHHHHHHhcccChHHHHHHhch-hHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHH
Confidence 9999888888888732 345555677776 888888888877654 23566677888888899889999999999999
Q ss_pred HHHHHHhhhh
Q 003530 549 GLIFSRVKSI 558 (813)
Q Consensus 549 ~~L~~lL~~~ 558 (813)
..|..+|..+
T Consensus 429 ~~L~~il~g~ 438 (1051)
T KOG0168|consen 429 DTLKRILQGY 438 (1051)
T ss_pred HHHHHHHhcc
Confidence 9999998763
No 51
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.87 E-value=4e-07 Score=98.24 Aligned_cols=302 Identities=11% Similarity=0.045 Sum_probs=206.0
Q ss_pred HHHHHHHHHhhcCCcccccccc-----cCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHh
Q 003530 127 PALKYVQYFCQSSRSNKHVVHN-----SELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFL 201 (813)
Q Consensus 127 ~al~~l~~l~~~~~~~r~~i~~-----~g~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL 201 (813)
-.|.-+.++...++..-..+.+ ......++.+|..++.-+...|...|..+...+..+.......-.+..|...|
T Consensus 73 yvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l 152 (429)
T cd00256 73 YVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQL 152 (429)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHh
Confidence 3455556666655432222222 34567788889888889999999999998765432211111111233455556
Q ss_pred ccC-cHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChH
Q 003530 202 SHE-LSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQ 280 (813)
Q Consensus 202 ~~~-~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~ 280 (813)
+++ +...+.-++.+|..|...+..|..+.. .++++.|+.+|+....+..++.+++-+++-|+.+++....+.+.+.|+
T Consensus 153 ~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~-~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~ 231 (429)
T cd00256 153 NNITNNDYVQTAARCLQMLLRVDEYRFAFVL-ADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQ 231 (429)
T ss_pred hccCCcchHHHHHHHHHHHhCCchHHHHHHH-ccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHH
Confidence 554 366688889999999999999988875 568999999998533467899999999999999888777777889999
Q ss_pred HHHHHHccC-CHHHHHHHHHHHHHhcCCc-------hhHHHHHhhhHHHHHHHHhc---CCHHHHHHHH-------HHHH
Q 003530 281 PLLTQILEG-PQETKLSLAAFLGDLALNS-------DVKVLVARTVGSCLINIMKS---GNMQAREAAL-------KALN 342 (813)
Q Consensus 281 ~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~-------~~~~~i~~~gi~~Lv~lL~~---~~~~~~~~a~-------~aL~ 342 (813)
.|+++++.. -+.+.+-+..+|.||...+ .....+.+.|++++++.|.. .++++.+.-- ....
T Consensus 232 ~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k 311 (429)
T cd00256 232 DLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQ 311 (429)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999876 4567777888999998733 23345666678888888865 3444322211 1112
Q ss_pred HhhC---------------Cc---------ccHHHHHHcC--ChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCC
Q 003530 343 QISS---------------CE---------PSAKVLIHAG--ILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD 396 (813)
Q Consensus 343 ~Ls~---------------~~---------~~~~~i~~~g--~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~ 396 (813)
.+++ +| +|...+-+.+ .+..|+.+|...+ ++.+...|+.=+..++.+-+.
T Consensus 312 ~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~----d~~~laVAc~Dige~vr~~P~ 387 (429)
T cd00256 312 DLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSV----DPIILAVACHDIGEYVRHYPR 387 (429)
T ss_pred HcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCC----CcceeehhhhhHHHHHHHCcc
Confidence 2221 11 3555555433 5688899985432 356666677777777776543
Q ss_pred CcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcc
Q 003530 397 FDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLT 441 (813)
Q Consensus 397 ~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~ 441 (813)
-+. .+..-|+=..+++|+.+.+++++.+|+.++..|.
T Consensus 388 gr~--------i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 388 GKD--------VVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHH--------HHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 332 4555677788999999999999999999987663
No 52
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=5.8e-06 Score=92.16 Aligned_cols=193 Identities=14% Similarity=0.147 Sum_probs=112.6
Q ss_pred hcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcC-chhHhHHhhhhchHH
Q 003530 159 LKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKS-EALCEKIGSINGAIL 237 (813)
Q Consensus 159 L~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~~g~i~ 237 (813)
|++++.-++..|+.+|++++... . .....|.+.++|++.++-+|+.|+.++..+-.. ++.-+. .++
T Consensus 116 L~s~nq~vVglAL~alg~i~s~E--m-----ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~------f~~ 182 (866)
T KOG1062|consen 116 LNSSNQYVVGLALCALGNICSPE--M-----ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH------FVI 182 (866)
T ss_pred ccCCCeeehHHHHHHhhccCCHH--H-----hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH------hhH
Confidence 46778888899999999987642 1 224567888999999999999998888777543 333222 244
Q ss_pred HHHHhcccCCCCHHHHHHHHHHHHhhcc-CCccHHHHHHcCChHHHHHHHcc---------------CCHHHHHHHHHHH
Q 003530 238 ILVGMTSSKSENLLTVEKAEKTLANLEK-CENNVRQMAENGRLQPLLTQILE---------------GPQETKLSLAAFL 301 (813)
Q Consensus 238 ~Lv~lL~~~s~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~G~i~~Lv~lL~~---------------~~~~~~~~a~~~L 301 (813)
.-..+|. +.+..+...++..+..+|. ++++...+.+ .++.||..|+. .++-++....+.|
T Consensus 183 ~~~~lL~--ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlL 258 (866)
T KOG1062|consen 183 AFRKLLC--EKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLL 258 (866)
T ss_pred HHHHHHh--hcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHH
Confidence 4556666 5666666666777777764 3444444444 56666666543 1333444444433
Q ss_pred HHhcCCchhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCCc---ccHHHHHHcCChHHHHHHHhccCCCCCChh
Q 003530 302 GDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCE---PSAKVLIHAGILPPLVKDLFTVGSNHLPMR 378 (813)
Q Consensus 302 ~~L~~~~~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~---~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~ 378 (813)
++|..++++..+.....|..++.+. .|....+=...|..++.+.. ...
T Consensus 259 ----------------------riLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~-------~~~ 309 (866)
T KOG1062|consen 259 ----------------------RILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRS-------NSG 309 (866)
T ss_pred ----------------------HHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccC-------Cch
Confidence 4444455556666666666666532 22222111112333333322 256
Q ss_pred HHHHHHHHHHHHHhcCCCC
Q 003530 379 LKEVSATILANVVNSGHDF 397 (813)
Q Consensus 379 ~~~~a~~~L~nL~~~~~~~ 397 (813)
+++.|+.+|.....+.+..
T Consensus 310 LrvlainiLgkFL~n~d~N 328 (866)
T KOG1062|consen 310 LRVLAINILGKFLLNRDNN 328 (866)
T ss_pred HHHHHHHHHHHHhcCCccc
Confidence 6777777777666655443
No 53
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=3.3e-06 Score=91.85 Aligned_cols=316 Identities=13% Similarity=0.061 Sum_probs=198.0
Q ss_pred CCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHH--h--hhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccC
Q 003530 191 GDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKI--G--SINGAILILVGMTSSKSENLLTVEKAEKTLANLEKC 266 (813)
Q Consensus 191 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i--~--~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~ 266 (813)
...+|.|..+|.+++....+.|..+|..++.+....-.- . --.-.||.++.+.+ +.++.++..|+.++-..-..
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~--h~spkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFK--HPSPKIRSHAVGCVNQFIII 204 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHh--CCChhHHHHHHhhhhheeec
Confidence 457899999999999999999999999998765321110 0 01236899999999 88999999999988654322
Q ss_pred CccHHHHHHc-CChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhHHHHHhh--h-HHHHHHHHhcCCHHHHHHHHHHHH
Q 003530 267 ENNVRQMAEN-GRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVART--V-GSCLINIMKSGNMQAREAALKALN 342 (813)
Q Consensus 267 ~~~~~~i~~~-G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~--g-i~~Lv~lL~~~~~~~~~~a~~aL~ 342 (813)
.++..+..- ..++.+..+-.+.++++|.+.+.++..|....-.| +.-+ + +.-+++.-++.++.+.-.|+.-..
T Consensus 205 -~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk--l~phl~~IveyML~~tqd~dE~VALEACEFwl 281 (885)
T KOG2023|consen 205 -QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK--LVPHLDNIVEYMLQRTQDVDENVALEACEFWL 281 (885)
T ss_pred -CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh--cccchHHHHHHHHHHccCcchhHHHHHHHHHH
Confidence 122222221 35566777778889999999999998886522111 1111 2 455666666778889999999999
Q ss_pred HhhCCcccHHHHHH--cCChHHHHHHHhccCCC--------------CCC------------------------------
Q 003530 343 QISSCEPSAKVLIH--AGILPPLVKDLFTVGSN--------------HLP------------------------------ 376 (813)
Q Consensus 343 ~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~--------------~~~------------------------------ 376 (813)
.++..+-.+..+.. ...||.|++-|.-...+ +..
T Consensus 282 a~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~D 361 (885)
T KOG2023|consen 282 ALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDD 361 (885)
T ss_pred HHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccc
Confidence 99998865555443 34677776644321100 000
Q ss_pred -------hhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCC-chH
Q 003530 377 -------MRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPT-TVL 448 (813)
Q Consensus 377 -------~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~-~~~ 448 (813)
-.+|...+.+|--|+.--. +.+. ...+|.|-+.|.+..-.+|+.++-+|..++.+-. +.-
T Consensus 362 DdD~~~dWNLRkCSAAaLDVLanvf~-----------~elL-~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~ 429 (885)
T KOG2023|consen 362 DDDAFSDWNLRKCSAAALDVLANVFG-----------DELL-PILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFV 429 (885)
T ss_pred cccccccccHhhccHHHHHHHHHhhH-----------HHHH-HHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcc
Confidence 1122222222222221000 0010 2234444445556677899999999999987621 111
Q ss_pred HHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCH-HHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHH
Q 003530 449 SVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGH-ELADALRGAVGQLGSLIRVISENVGISKEQAAAVGL 527 (813)
Q Consensus 449 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~-~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~ 527 (813)
.... ..++.|+++|.++.+-||.-.||.|...+..... +-.+.+. ..+..|++.+-+++. .+|.+|+.+
T Consensus 430 p~Lp-----eLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~---pvL~~ll~~llD~NK--~VQEAAcsA 499 (885)
T KOG2023|consen 430 PHLP-----ELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK---PVLEGLLRRLLDSNK--KVQEAACSA 499 (885)
T ss_pred cchH-----HHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH---HHHHHHHHHHhcccH--HHHHHHHHH
Confidence 1122 2378889999999999999999999988743211 1112222 245566666666664 999999998
Q ss_pred HhcCCC
Q 003530 528 LAELPE 533 (813)
Q Consensus 528 L~~L~~ 533 (813)
.+.+-.
T Consensus 500 fAtleE 505 (885)
T KOG2023|consen 500 FATLEE 505 (885)
T ss_pred HHHHHH
Confidence 877643
No 54
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=5.7e-05 Score=83.96 Aligned_cols=552 Identities=13% Similarity=0.100 Sum_probs=303.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccC-cchhhhhhcCCCHHHHHHHhccCcH-HHHHHHHHHHHHhhcCchhHhHHhhh
Q 003530 155 IIDMLKSSSRKVRCTALETLRIVVEED-DDNKEILGQGDTVRTIVKFLSHELS-REREEAVSLLYELSKSEALCEKIGSI 232 (813)
Q Consensus 155 Lv~lL~s~~~~~~~~al~~L~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~ls~~~~~~~~i~~~ 232 (813)
+.+-|.++.+.....|..++..++.-. +.++- .+.++.|+.-...+.+ ..++.++.+|..++.+-+.....-..
T Consensus 95 il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~w----p~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~s 170 (859)
T KOG1241|consen 95 ILRTLGSPEPRRPSSAAQCVAAIACIELPQNQW----PELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQS 170 (859)
T ss_pred HHHHcCCCCCCccchHHHHHHHHHHhhCchhhC----HHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 344556566666666666666665432 11110 1233444444433333 36899999999999876555444444
Q ss_pred hchHHHHHHhcccCCCCHHHHHHHHHHHHhhc-cCCccH-HHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcC-C-c
Q 003530 233 NGAILILVGMTSSKSENLLTVEKAEKTLANLE-KCENNV-RQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-N-S 308 (813)
Q Consensus 233 ~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~-~~~~~~-~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~-~ 308 (813)
+..+..++.-.+...++..++-.|..+|.|-- ....|- ..+-+.=......+.-+.++.+++..+...|..+.. . +
T Consensus 171 N~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~ 250 (859)
T KOG1241|consen 171 NDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYE 250 (859)
T ss_pred hHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 56677777766533567788999999998742 111111 111111122334455566788999888888888765 2 2
Q ss_pred hhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCCc-c----------------cHHHHHH--cCChHHHHHHHhc
Q 003530 309 DVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCE-P----------------SAKVLIH--AGILPPLVKDLFT 369 (813)
Q Consensus 309 ~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~-~----------------~~~~i~~--~g~i~~Lv~lL~~ 369 (813)
-....|.+.-...-++-+++.++++.-.+..-=.++|... + +...... .+++|.|+++|..
T Consensus 251 ~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~k 330 (859)
T KOG1241|consen 251 FMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTK 330 (859)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHh
Confidence 2344555543455566677889998888887777776421 1 1111111 3678899999987
Q ss_pred cCCCCC--ChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCch
Q 003530 370 VGSNHL--PMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTV 447 (813)
Q Consensus 370 ~~~~~~--~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~ 447 (813)
.+.++. +-..-..|..+|.-++....+. +. ..++|-+-+-+++++-.-++.++-++..+-.++..
T Consensus 331 qde~~d~DdWnp~kAAg~CL~l~A~~~~D~-----------Iv-~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~- 397 (859)
T KOG1241|consen 331 QDEDDDDDDWNPAKAAGVCLMLFAQCVGDD-----------IV-PHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEP- 397 (859)
T ss_pred CCCCcccccCcHHHHHHHHHHHHHHHhccc-----------ch-hhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCch-
Confidence 553321 1223334444444444433221 22 23344333467788888889999999988888763
Q ss_pred HHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHH
Q 003530 448 LSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGL 527 (813)
Q Consensus 448 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~ 527 (813)
.....+ -.++++.++.++.++..-++..+.|.|..+++..+..+....... +.+..|+.-|.+.. .+-.+++|+
T Consensus 398 -~~Lt~i-V~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~-~~l~~l~~gL~DeP---rva~N~CWA 471 (859)
T KOG1241|consen 398 -DKLTPI-VIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQ-SKLSALLEGLNDEP---RVASNVCWA 471 (859)
T ss_pred -hhhhHH-HhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhh-HHHHHHHHHhhhCc---hHHHHHHHH
Confidence 222222 358899999999988889999999999999865543322222222 45666666666655 677788888
Q ss_pred HhcCCCCCHHHHH-----HHHhcCcHHHHHHHhhhhccccccCCccchhhhHhHHHHHHHHhccCCCChHHHHHHHHcCc
Q 003530 528 LAELPERDLGLTR-----QMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNL 602 (813)
Q Consensus 528 L~~L~~~~~~~~~-----~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~~ 602 (813)
+-+|+..-.+... .... -.++.++.-|-. ...+.+-....+.-.+..+|..+-.. .++-...+. .+.
T Consensus 472 f~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~---~tdr~dgnqsNLR~AAYeALmElIk~---st~~vy~~v-~~~ 543 (859)
T KOG1241|consen 472 FISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLK---VTDRADGNQSNLRSAAYEALMELIKN---STDDVYPMV-QKL 543 (859)
T ss_pred HHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHh---hccccccchhhHHHHHHHHHHHHHHc---CcHHHHHHH-HHH
Confidence 8887531111000 0000 233444444433 12222224455666666666555432 222111111 111
Q ss_pred hHHHHH---------HHhcC---CchHHHHHHHHHHhhhccccccccCCCCCCCCCCCcccccccccCCCCCCCCccccc
Q 003530 603 AALFIE---------LLQSN---GLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRG 670 (813)
Q Consensus 603 i~~L~~---------lL~~~---~~~~vk~~Aa~aL~~ls~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (813)
.+.... .+... .-..+|..-+..|..+.+....
T Consensus 544 ~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~----------------------------------- 588 (859)
T KOG1241|consen 544 TLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS----------------------------------- 588 (859)
T ss_pred HHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc-----------------------------------
Confidence 111111 11111 0113444444445444332111
Q ss_pred ccCccccchhhhccchHHHHHhhcc-CchhHHHHHHHHHHhhhhcCcchhhHHHHHHhhcC-cHHHHHHHhhcCChHHHH
Q 003530 671 LCSLKETFCLLEGHAVEKLIALLDH-TNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQG-IKPILDVLLEKRTENLQR 748 (813)
Q Consensus 671 ~~~~~~~~~l~~~gai~~Lv~lL~~-~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~~~~~-v~~L~~ll~~~~~~~~~~ 748 (813)
.+.-+.......|.+.+.+ ....|.+-|..|+++|+..- +......... +|.|..-|+.-.+-.+-.
T Consensus 589 ------~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~L-----g~~F~kym~~f~pyL~~gL~n~~e~qVc~ 657 (859)
T KOG1241|consen 589 ------DIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESL-----GKGFAKYMPAFKPYLLMGLSNFQEYQVCA 657 (859)
T ss_pred ------cchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHH-----hHhHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 0001123355678888887 44558888888888887541 1122222233 344766674334556678
Q ss_pred HHHHHHHHHHcc-hhhhhhhcCCCcchHHHHHHhhhcC
Q 003530 749 RAVWVVERILRT-DDIAYEVSGDPNVSTALVDAFQHAD 785 (813)
Q Consensus 749 ~a~~aL~~i~~~-~~~~~~~~~~~~~~~~Lv~~l~~~~ 785 (813)
.|++.++.+++- ++.-..|.. .+...|++.|++.+
T Consensus 658 ~aVglVgdl~raL~~~i~py~d--~~mt~Lvq~Lss~~ 693 (859)
T KOG1241|consen 658 AAVGLVGDLARALEDDILPYCD--ELMTVLVQCLSSPN 693 (859)
T ss_pred HHHHHHHHHHHHHHhhhhhHHH--HHHHHHHHHccCcc
Confidence 888888888865 333334432 23467888888776
No 55
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.74 E-value=3.6e-07 Score=97.27 Aligned_cols=197 Identities=16% Similarity=0.111 Sum_probs=142.6
Q ss_pred CHHHHHHHhcc--CcHHHHHHHHHHHHHhhcCchhHhHHhhh------hchHHHHHHhcccCCCCHHHHHHHHHHHHhhc
Q 003530 193 TVRTIVKFLSH--ELSREREEAVSLLYELSKSEALCEKIGSI------NGAILILVGMTSSKSENLLTVEKAEKTLANLE 264 (813)
Q Consensus 193 ~i~~Lv~lL~~--~~~~~~~~a~~~L~~ls~~~~~~~~i~~~------~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~ 264 (813)
....++.+|+. .+.++.+..+..+..+..++..+..++.. .....++++++. ++|.-++..|+.+|..|.
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~--~~D~~i~~~a~~iLt~Ll 133 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLD--RNDSFIQLKAAFILTSLL 133 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S---SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhc--CCCHHHHHHHHHHHHHHH
Confidence 35666677754 47788999999999988766544444322 125788888888 779999999999999996
Q ss_pred cCCccHHHHHHcCChHHHHHHHccC----CHHHHHHHHHHHHHhcCCchhHHHHHhhh-HHHHHHHH-----hc--CCHH
Q 003530 265 KCENNVRQMAENGRLQPLLTQILEG----PQETKLSLAAFLGDLALNSDVKVLVARTV-GSCLINIM-----KS--GNMQ 332 (813)
Q Consensus 265 ~~~~~~~~i~~~G~i~~Lv~lL~~~----~~~~~~~a~~~L~~L~~~~~~~~~i~~~g-i~~Lv~lL-----~~--~~~~ 332 (813)
........-...+.++.++.+|.+. +.+++..++.+|.+|...++.|..+.+.+ ++.|+.+| .+ .+..
T Consensus 134 ~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q 213 (312)
T PF03224_consen 134 SQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ 213 (312)
T ss_dssp TSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred HcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence 5554443333356778888888763 45567889999999999999998888764 89999999 22 3456
Q ss_pred HHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCC
Q 003530 333 AREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGH 395 (813)
Q Consensus 333 ~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~ 395 (813)
++..++-++|.|+.+++....+.+.+.|+.|+.+++... .+.+.+-+.++|.||.....
T Consensus 214 l~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~----KEKvvRv~la~l~Nl~~~~~ 272 (312)
T PF03224_consen 214 LQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSI----KEKVVRVSLAILRNLLSKAP 272 (312)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH------SHHHHHHHHHHHHHTTSSSS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcc----cchHHHHHHHHHHHHHhccH
Confidence 789999999999999999999999999999999999853 58899999999999987655
No 56
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.74 E-value=6.2e-09 Score=72.52 Aligned_cols=38 Identities=39% Similarity=0.915 Sum_probs=32.6
Q ss_pred cccccccCCCc-eecCCCchhcHHHHHHHHHHhhhCCCCCCCCCC
Q 003530 35 CPLTKQVMRDP-VTLENGQTFEREAIEKWFKECRENGRKPVCPLT 78 (813)
Q Consensus 35 Cpi~~~~m~dp-v~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t 78 (813)
||||.+.+.|| ++++|||+||+.||++|++. ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~------~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK------NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC------TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC------cCCCcCC
Confidence 89999999999 57999999999999999985 3789986
No 57
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.72 E-value=6.4e-09 Score=72.85 Aligned_cols=39 Identities=28% Similarity=0.708 Sum_probs=24.2
Q ss_pred cccccccCCC----ceecCCCchhcHHHHHHHHHHhhhCCCCCCCC
Q 003530 35 CPLTKQVMRD----PVTLENGQTFEREAIEKWFKECRENGRKPVCP 76 (813)
Q Consensus 35 Cpi~~~~m~d----pv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP 76 (813)
||||.+ |.+ |++++|||+||+.||++++... .+..+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~--~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS--DRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH---S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC--CCCeeeCc
Confidence 999999 999 9999999999999999999962 11236787
No 58
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=8.3e-06 Score=90.53 Aligned_cols=336 Identities=17% Similarity=0.155 Sum_probs=233.6
Q ss_pred CCHHHHHHHhccCc-HHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCc--
Q 003530 192 DTVRTIVKFLSHEL-SREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCEN-- 268 (813)
Q Consensus 192 g~i~~Lv~lL~~~~-~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~-- 268 (813)
..|+.|+.-+.+.. .+-|+.|+..|..+++ ..|..++ .-|+++|+..|.+...|+++...+..++.++..+++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~Vg--a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREEVG--AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHHH--HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 34777776665543 5569999999998876 5666665 368999999998767899999999999999965442
Q ss_pred ----c-H----------HHHH-HcCChHHHHHHHccCCHHHHHHHHHHHHHhcCC--chhHHHHHhh--hHHHHHHHHhc
Q 003530 269 ----N-V----------RQMA-ENGRLQPLLTQILEGPQETKLSLAAFLGDLALN--SDVKVLVART--VGSCLINIMKS 328 (813)
Q Consensus 269 ----~-~----------~~i~-~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~--gi~~Lv~lL~~ 328 (813)
+ + ..+. ..+-|..|+..+...|-.+|..+...|.++-.+ .+.+..+-.. ||..|+.+|.+
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 1 1 2333 348899999999999999999999999998764 4567777665 89999999998
Q ss_pred CCHHHHHHHHHHHHHhhCCcccHHHHH-HcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCc
Q 003530 329 GNMQAREAALKALNQISSCEPSAKVLI-HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQ 407 (813)
Q Consensus 329 ~~~~~~~~a~~aL~~Ls~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~ 407 (813)
..+.++..++-.|..|.....+.+.++ =..+...|..++...+..+ .--+.+.|+..|-||.......+.
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~d-GgIVveDCL~ll~NLLK~N~SNQ~-------- 248 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLD-GGIVVEDCLILLNNLLKNNISNQN-------- 248 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHHHHhhCcchhh--------
Confidence 888999999999999999766665555 4779999999999765211 236789999999999998776665
Q ss_pred cccchhhHHHHHHhhcC---CCh------HHH----HHHHHHHHHcccC---CCchHHHHHHHHhcCCHHHHHHhhhCCC
Q 003530 408 TLVSEDIVHNLLHLISN---TGP------TIE----CKLLQVLVGLTSS---PTTVLSVVSAIKSSGATISLVQFVEAPQ 471 (813)
Q Consensus 408 ~l~~~~~v~~Lv~lL~~---~~~------~~~----~~a~~~L~~L~~~---~~~~~~~~~~i~~~g~i~~Lv~lL~~~~ 471 (813)
.+.+.+.||.|.++|.. ++. .-| -.++.++..+..- +......++.+.+.+++..|..++-++.
T Consensus 249 ~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~ 328 (970)
T KOG0946|consen 249 FFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPG 328 (970)
T ss_pred HHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCC
Confidence 67888999999988863 221 111 1234444444432 2222344567888999999999888774
Q ss_pred -h-HHHHHHHHHHHHhCCCC---CHHHHHHHhcc-----cccHHHHHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHHH
Q 003530 472 -N-DLRLASIELIQNLSPHM---GHELADALRGA-----VGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQ 541 (813)
Q Consensus 472 -~-~v~~~A~~~L~~Ls~~~---~~~~~~~l~~~-----~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 541 (813)
+ +++-.+..++....+.. ..++....... +-.+-.+..+..+..+ ...|.+.+.++..+...|....+.
T Consensus 329 vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~-~~lRcAv~ycf~s~l~dN~~gq~~ 407 (970)
T KOG0946|consen 329 VPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQP-FSLRCAVLYCFRSYLYDNDDGQRK 407 (970)
T ss_pred CcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCC-chHHHHHHHHHHHHHhcchhhHHH
Confidence 2 67766666666554321 22222221111 1122334455555554 577888887776665555554433
No 59
>PF05536 Neurochondrin: Neurochondrin
Probab=98.68 E-value=4.4e-05 Score=86.65 Aligned_cols=416 Identities=16% Similarity=0.157 Sum_probs=246.6
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcc---hhhhhhcCCCHHHHHHHhccC-------cHHHHHHHHHHHHHhh
Q 003530 151 LIPMIIDMLKSSSRKVRCTALETLRIVVEEDDD---NKEILGQGDTVRTIVKFLSHE-------LSREREEAVSLLYELS 220 (813)
Q Consensus 151 ~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~---~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~~ls 220 (813)
.+...+++|++.+.+-+..++..+.++...++. .++.|.++=+.+.|-++|+++ ....+.-|+.+|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 366677889888877788888888888887653 345677887889999999873 3455788999999999
Q ss_pred cCchhH--hHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccCCHHHHHHHH
Q 003530 221 KSEALC--EKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLA 298 (813)
Q Consensus 221 ~~~~~~--~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~ 298 (813)
.+++.. ..+ -+-||.|++.+.. +++.++...+..+|..++..++++..+.+.|+|+.|.+.+.+ .+...+.+.
T Consensus 86 ~~~~~a~~~~~---~~~IP~Lle~l~~-~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al 160 (543)
T PF05536_consen 86 RDPELASSPQM---VSRIPLLLEILSS-SSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIAL 160 (543)
T ss_pred CChhhhcCHHH---HHHHHHHHHHHHc-CCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence 987654 333 2679999999984 333589999999999999999999999999999999999988 556678888
Q ss_pred HHHHHhcCCchhHHHHHhh--h----HHHHHHHHhcCCHHHHHHHHHHHHHhhCCccc--HH----HHHHcCChHHHHHH
Q 003530 299 AFLGDLALNSDVKVLVART--V----GSCLINIMKSGNMQAREAALKALNQISSCEPS--AK----VLIHAGILPPLVKD 366 (813)
Q Consensus 299 ~~L~~L~~~~~~~~~i~~~--g----i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~--~~----~i~~~g~i~~Lv~l 366 (813)
.++.++....+.+ .+.+. + ++.+-..+.......+...+..|..+-...+. .. .-.-..+..-+..+
T Consensus 161 ~lL~~Lls~~~~~-~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i 239 (543)
T PF05536_consen 161 NLLLNLLSRLGQK-SWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI 239 (543)
T ss_pred HHHHHHHHhcchh-hhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence 8888876643321 11121 1 34444445444445566677777776543321 11 11112233445555
Q ss_pred HhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHH---------------HhhcCCC-h---
Q 003530 367 LFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLL---------------HLISNTG-P--- 427 (813)
Q Consensus 367 L~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv---------------~lL~~~~-~--- 427 (813)
|++. ..+..+..++.+.+.|...-.. +-+..+.. .....+..-++ +..+... +
T Consensus 240 L~sr----~~~~~R~~al~Laa~Ll~~~G~-~wl~~~~~---~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~ 311 (543)
T PF05536_consen 240 LQSR----LTPSQRDPALNLAASLLDLLGP-EWLFADDK---KSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQ 311 (543)
T ss_pred HhcC----CCHHHHHHHHHHHHHHHHHhCh-HhhcCCCC---CCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHH
Confidence 6553 3567777777766666554221 11111110 00011222222 2222111 1
Q ss_pred -------HHHHHHHHHHHHcccC------CCchHHHHHHHHhcCCHHHHHHhhhCCCh------HHHHHHHHHHHHhCCC
Q 003530 428 -------TIECKLLQVLVGLTSS------PTTVLSVVSAIKSSGATISLVQFVEAPQN------DLRLASIELIQNLSPH 488 (813)
Q Consensus 428 -------~~~~~a~~~L~~L~~~------~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~------~v~~~A~~~L~~Ls~~ 488 (813)
.+.+..+..+.+-+.. +......+..+ .+.+...+++|++-.+ ....+++++|+.--..
T Consensus 312 ~~L~~cf~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l--~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaE 389 (543)
T PF05536_consen 312 RLLASCFSILEHFIGYLVRSLEEESLDLDPDTLLKLRTSL--SETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAE 389 (543)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCCCCHHHHHHHHHHH--HHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHh
Confidence 1223333333332221 11112223333 2556667777776443 2445566666543333
Q ss_pred CCHHHHHHHhcccccHHHHHHhhhcCCCC--------hHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhhhcc
Q 003530 489 MGHELADALRGAVGQLGSLIRVISENVGI--------SKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQL 560 (813)
Q Consensus 489 ~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~--------~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~ 560 (813)
.+....+.+. |.++-++.+.+++... .+.+..-.-.|..++. +..-++.+...|+...+.+.+...-.
T Consensus 390 e~~~lr~~v~---~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~-e~~gr~~l~~~~g~~~l~~~l~~~~~ 465 (543)
T PF05536_consen 390 ETSALRKEVY---GLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTA-EEEGRKILLSNGGWKLLCDDLLKILQ 465 (543)
T ss_pred ChHHHHHHHH---HHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhc-cHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 3444445553 6888899998877641 1234445556677777 55566888899998888876643211
Q ss_pred c--cccC-CccchhhhHhHHHHHHHHhcc
Q 003530 561 G--ETRG-SRFVTPFLEGLLSVLARVTFV 586 (813)
Q Consensus 561 ~--~~~~-~~~~~~~~e~a~~aL~~~~~~ 586 (813)
. +... ....+.-...+++++.|++..
T Consensus 466 ~~~~~~~~~~~~~~~l~~~c~illNl~~~ 494 (543)
T PF05536_consen 466 SPSGDDDAEDSAEMALVTACGILLNLVVT 494 (543)
T ss_pred hcccCcchhhhhHHHHHHHHHHHHHHHhc
Confidence 1 1100 001111345678899998854
No 60
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.68 E-value=0.0001 Score=83.65 Aligned_cols=514 Identities=17% Similarity=0.135 Sum_probs=290.9
Q ss_pred cHHHHHHHHHHHhhcCCcccccccccCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCC-------HHH
Q 003530 124 DIMPALKYVQYFCQSSRSNKHVVHNSELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDT-------VRT 196 (813)
Q Consensus 124 ~~~~al~~l~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~-------i~~ 196 (813)
....+|..+......++.....-...-..|+++.-..++-..+-..|+.+...++.-=..- ..=...++ +..
T Consensus 494 ~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl-~~~~~~d~~~~v~~m~~~ 572 (1233)
T KOG1824|consen 494 LKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPL-QPPSSFDASPYVKTMYDC 572 (1233)
T ss_pred HHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhccc-CCCccCCCChhHHHHHHH
Confidence 3446788877765555443332222334455555556666778888888777775421000 00000111 223
Q ss_pred HHHHhc--cCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccH--HH
Q 003530 197 IVKFLS--HELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNV--RQ 272 (813)
Q Consensus 197 Lv~lL~--~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~--~~ 272 (813)
..+.|. ..|.++++.|+.+...+...-...... ..+..++.|++-|. ++-.+-.|+.+|..++..+-.. ..
T Consensus 573 tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~-eL~~~L~il~eRl~----nEiTRl~AvkAlt~Ia~S~l~i~l~~ 647 (1233)
T KOG1824|consen 573 TLQRLKATDSDQEVKERAISCMGQIIANFGDFLGN-ELPRTLPILLERLG----NEITRLTAVKALTLIAMSPLDIDLSP 647 (1233)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHh----chhHHHHHHHHHHHHHhccceeehhh
Confidence 344454 446778999999888764322111111 12456777777776 4566778888888876554322 22
Q ss_pred HHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc--hhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCCccc
Q 003530 273 MAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNS--DVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPS 350 (813)
Q Consensus 273 i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~--~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~ 350 (813)
+. ..+++.+...++.....++.....++..|..+- .......+..+..+-.++...+..+.+.|...|..+...+..
T Consensus 648 ~l-~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps 726 (1233)
T KOG1824|consen 648 VL-TEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPS 726 (1233)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccH
Confidence 22 136778888888877777777777777775432 222333333233344444445667788888888888887766
Q ss_pred HHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChH--
Q 003530 351 AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPT-- 428 (813)
Q Consensus 351 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~-- 428 (813)
....+..-.++.++.++++ +-++-.|..++.++-..--... ...-+ ...|+.++..+-++
T Consensus 727 ~l~~~~~~iL~~ii~ll~S-------pllqg~al~~~l~~f~alV~t~----------~~~l~-y~~l~s~lt~PV~~~~ 788 (1233)
T KOG1824|consen 727 SLLKISNPILDEIIRLLRS-------PLLQGGALSALLLFFQALVITK----------EPDLD-YISLLSLLTAPVYEQV 788 (1233)
T ss_pred HHHHHhhhhHHHHHHHhhC-------ccccchHHHHHHHHHHHHHhcC----------CCCcc-HHHHHHHHcCCccccc
Confidence 6666667789999999987 3445555555444322100000 00112 55666666643221
Q ss_pred ---HH-------HHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCC--ChHHHHHHHHHHHHhCCCCCHHHHHH
Q 003530 429 ---IE-------CKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP--QNDLRLASIELIQNLSPHMGHELADA 496 (813)
Q Consensus 429 ---~~-------~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~A~~~L~~Ls~~~~~~~~~~ 496 (813)
+- ..++.+|...|.... .. ....|+.-+.++ +..++.-|.-.|+.+-.+....-
T Consensus 789 ~~~l~kqa~~siA~cvA~Lt~~~~~~s-----~s------~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~--- 854 (1233)
T KOG1824|consen 789 TDGLHKQAYYSIAKCVAALTCACPQKS-----KS------LATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP--- 854 (1233)
T ss_pred ccchhHHHHHHHHHHHHHHHHhccccc-----hh------HHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc---
Confidence 11 123333433333211 11 122333333323 33667777777777664322211
Q ss_pred HhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhhhccccccCCccchhhhHhH
Q 003530 497 LRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGL 576 (813)
Q Consensus 497 l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a 576 (813)
..+.-..++..+++++. +++.+|+.+|++++.++-+. .+|.++..+.+. +.=++-.
T Consensus 855 ---~~e~~~~iieaf~sp~e--dvksAAs~ALGsl~vgnl~~--------yLpfil~qi~sq-----------pk~QyLL 910 (1233)
T KOG1824|consen 855 ---QNELKDTIIEAFNSPSE--DVKSAASYALGSLAVGNLPK--------YLPFILEQIESQ-----------PKRQYLL 910 (1233)
T ss_pred ---chhhHHHHHHHcCCChH--HHHHHHHHHhhhhhcCchHh--------HHHHHHHHHhcc-----------hHhHHHH
Confidence 11333457788888885 99999999999999866543 567777776651 1112222
Q ss_pred HHHHHHHhccCCCChHHHHHHHHcCchHHHHHHHhcC---CchHHHHHHHHHHhhhccccccccCCCCCCCCCCCccccc
Q 003530 577 LSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSN---GLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFP 653 (813)
Q Consensus 577 ~~aL~~~~~~l~~~~~~~~~~~~~~~i~~L~~lL~~~---~~~~vk~~Aa~aL~~ls~~~~~l~~~~~~~~~~~~~~~~~ 653 (813)
...|..+-.. ...+.. .-.++-++.+|..+ ..+-.|.-.|.+|+.|....+
T Consensus 911 LhSlkevi~~--~svd~~-----~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~ep------------------- 964 (1233)
T KOG1824|consen 911 LHSLKEVIVS--ASVDGL-----KPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEP------------------- 964 (1233)
T ss_pred HHHHHHHHHH--hccchh-----hhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCCh-------------------
Confidence 3333222211 111111 12344556665432 145567777888876653221
Q ss_pred ccccCCCCCCCCcccccccCccccchhhhccchHHHHHhhccCchhHHHHHHHHHHhhhhcCcchhhHHHHHHhhcCcHH
Q 003530 654 CFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKP 733 (813)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~~~~~v~~ 733 (813)
..-+|.|=..+.++.+..|..+..|......|... -...+.+ .-|..
T Consensus 965 -----------------------------esLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~---~id~~lk-~~ig~ 1011 (1233)
T KOG1824|consen 965 -----------------------------ESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQ---PIDPLLK-QQIGD 1011 (1233)
T ss_pred -----------------------------HHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCC---ccCHHHH-HHHHH
Confidence 12467788888899999999999999877767552 1222222 44566
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHcc
Q 003530 734 ILDVLLEKRTENLQRRAVWVVERILRT 760 (813)
Q Consensus 734 L~~ll~~~~~~~~~~~a~~aL~~i~~~ 760 (813)
.+.++ +.+|.++++.|+-+|.....+
T Consensus 1012 fl~~~-~dpDl~VrrvaLvv~nSaahN 1037 (1233)
T KOG1824|consen 1012 FLKLL-RDPDLEVRRVALVVLNSAAHN 1037 (1233)
T ss_pred HHHHH-hCCchhHHHHHHHHHHHHHcc
Confidence 77888 499999999999999887744
No 61
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.63 E-value=0.00055 Score=75.85 Aligned_cols=515 Identities=13% Similarity=0.175 Sum_probs=273.3
Q ss_pred cCCCHHHHHHHhc----cC-cHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhc
Q 003530 190 QGDTVRTIVKFLS----HE-LSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLE 264 (813)
Q Consensus 190 ~~g~i~~Lv~lL~----~~-~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~ 264 (813)
++=++|.|..+|+ +. +...|+.++.+...++..-.. ..+-...+.+..+-..|. ++...++..++-+|..|+
T Consensus 505 salgip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gc-svlphl~~lv~ii~~gl~--De~qkVR~itAlalsala 581 (1172)
T KOG0213|consen 505 SALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGC-SVLPHLKPLVKIIEHGLK--DEQQKVRTITALALSALA 581 (1172)
T ss_pred HHhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcc-hhhhhhHHHHHHHHHhhc--ccchhhhhHHHHHHHHHH
Confidence 3445677766663 22 455566676666655432111 111111123333334444 566677777777777764
Q ss_pred c--CCccHHHHHHcCChHHHHHHHccC----CHHHHHHHHHHHHHhcC--CchhHHHHHhhhHHHHHHHHhcCCHHHHHH
Q 003530 265 K--CENNVRQMAENGRLQPLLTQILEG----PQETKLSLAAFLGDLAL--NSDVKVLVARTVGSCLINIMKSGNMQAREA 336 (813)
Q Consensus 265 ~--~~~~~~~i~~~G~i~~Lv~lL~~~----~~~~~~~a~~~L~~L~~--~~~~~~~i~~~gi~~Lv~lL~~~~~~~~~~ 336 (813)
. .+-... .++..++.|-.+ .......-+.+++.|+- +++.........+..+++=..+++++++.-
T Consensus 582 eaa~Pygie------~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkki 655 (1172)
T KOG0213|consen 582 EAATPYGIE------QFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKI 655 (1172)
T ss_pred HhcCCcchH------HHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHH
Confidence 2 222222 233334444332 22222233345555543 223333333333455666667889999999
Q ss_pred HHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCC--CCCC-hhHHHHHHHHHHHHHhcCCCCccc----ccCCCCccc
Q 003530 337 ALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGS--NHLP-MRLKEVSATILANVVNSGHDFDSI----TVGPDNQTL 409 (813)
Q Consensus 337 a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~--~~~~-~~~~~~a~~~L~nL~~~~~~~~~~----~~~~~~~~l 409 (813)
.+.++..+|.....-...+....+|........... +-.+ ..+.+-+.. +++=....+-...+ .-+.....-
T Consensus 656 vLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~-ia~KvG~~~~v~R~v~~lkde~e~yrk 734 (1172)
T KOG0213|consen 656 VLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVE-IAAKVGSDPIVSRVVLDLKDEPEQYRK 734 (1172)
T ss_pred HHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHH-HHHHhCchHHHHHHhhhhccccHHHHH
Confidence 999999999877666666777777776655443210 0000 111111111 11111111100000 000000001
Q ss_pred cchhhHHHHHHhhcCC--ChHHHHHHHHHH-HHcccCCCchH-------HHHHHHHh--c----CCHHHHHHhhhCCChH
Q 003530 410 VSEDIVHNLLHLISNT--GPTIECKLLQVL-VGLTSSPTTVL-------SVVSAIKS--S----GATISLVQFVEAPQND 473 (813)
Q Consensus 410 ~~~~~v~~Lv~lL~~~--~~~~~~~a~~~L-~~L~~~~~~~~-------~~~~~i~~--~----g~i~~Lv~lL~~~~~~ 473 (813)
...+.+..++..|-.. +...-+..+..+ ..+..+..... .+...+.. . ..+..++..|++++++
T Consensus 735 m~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~ 814 (1172)
T KOG0213|consen 735 MVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAK 814 (1172)
T ss_pred HHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChh
Confidence 1133444444444321 222333332222 22322221111 11111110 0 1134456789999999
Q ss_pred HHHHHHHHHHHhCC---CCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCC------CCHHHHHHHHh
Q 003530 474 LRLASIELIQNLSP---HMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPE------RDLGLTRQMLD 544 (813)
Q Consensus 474 v~~~A~~~L~~Ls~---~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~------~~~~~~~~l~~ 544 (813)
+|+.|+.++..++. ...++ +.+... | -.|..-|....+ |+....+++|..+.. ..+.+
T Consensus 815 vRqqaadlis~la~Vlktc~ee--~~m~~l-G--vvLyEylgeeyp--EvLgsILgAikaI~nvigm~km~pPi------ 881 (1172)
T KOG0213|consen 815 VRQQAADLISSLAKVLKTCGEE--KLMGHL-G--VVLYEYLGEEYP--EVLGSILGAIKAIVNVIGMTKMTPPI------ 881 (1172)
T ss_pred HHHHHHHHHHHHHHHHHhccHH--HHHHHh-h--HHHHHhcCcccH--HHHHHHHHHHHHHHHhccccccCCCh------
Confidence 99999988888772 22222 122211 1 235666666665 776655555543322 22222
Q ss_pred cCcHHHHHHHhhhhccccccCCccchhhhHhHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHHhcCCchHHHHHHHH
Q 003530 545 EGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSAT 624 (813)
Q Consensus 545 ~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~ 624 (813)
.+.+|.|...|++ -...++++++..+..++....+-...++.++ +-=-|+++|++. +-.+++.|..
T Consensus 882 ~dllPrltPILkn----------rheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkah-kK~iRRaa~n 947 (1172)
T KOG0213|consen 882 KDLLPRLTPILKN----------RHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAH-KKEIRRAAVN 947 (1172)
T ss_pred hhhcccchHhhhh----------hHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHH-HHHHHHHHHh
Confidence 3677888888887 2467889988888888854212222344443 222467888888 8899999999
Q ss_pred HHhhhccccccccCCCCCCCCCCCcccccccccCCCCCCCCcccccccCccccchhhhccchHHHHHhhccCchhHHHHH
Q 003530 625 ALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEAS 704 (813)
Q Consensus 625 aL~~ls~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gai~~Lv~lL~~~~~~v~~~A 704 (813)
.++.+++-.. -...+..|++-|+.++-.-|.-.
T Consensus 948 TfG~IakaIG-----------------------------------------------PqdVLatLlnnLkvqeRq~RvcT 980 (1172)
T KOG0213|consen 948 TFGYIAKAIG-----------------------------------------------PQDVLATLLNNLKVQERQNRVCT 980 (1172)
T ss_pred hhhHHHHhcC-----------------------------------------------HHHHHHHHHhcchHHHHHhchhh
Confidence 9988774210 13356677777777777666666
Q ss_pred HHHHHhhhhcCcchhhHHHHHHhhcCcHHHHHHHhhcCChHHHHHHHHHHHHHHcc-hhhhhhhcCCCcchHHHHHHhhh
Q 003530 705 LAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT-DDIAYEVSGDPNVSTALVDAFQH 783 (813)
Q Consensus 705 ~~AL~~L~~~~~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~~a~~aL~~i~~~-~~~~~~~~~~~~~~~~Lv~~l~~ 783 (813)
..|++..+..-. -..++|.|..=- ..++.++|.-.+.++.-+|.. .+....|.- .+.+.|.++|.+
T Consensus 981 tvaIaIVaE~c~----------pFtVLPalmneY-rtPe~nVQnGVLkalsf~FeyigemskdYiy--av~PlleDAlmD 1047 (1172)
T KOG0213|consen 981 TVAIAIVAETCG----------PFTVLPALMNEY-RTPEANVQNGVLKALSFMFEYIGEMSKDYIY--AVTPLLEDALMD 1047 (1172)
T ss_pred hhhhhhhhhhcC----------chhhhHHHHhhc-cCchhHHHHhHHHHHHHHHHHHHHHhhhHHH--HhhHHHHHhhcc
Confidence 666665552211 124566665544 366778888777777777744 344444321 123578899999
Q ss_pred cCchhHHHHHHHHHHhcc
Q 003530 784 ADYRTRQIAERALKHIDK 801 (813)
Q Consensus 784 ~~~~~~~~Aa~~L~~l~~ 801 (813)
.|..-|+.|..+++||+.
T Consensus 1048 rD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1048 RDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred ccHHHHHHHHHHHHHHhc
Confidence 999999999999999985
No 62
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=6.3e-05 Score=83.77 Aligned_cols=432 Identities=12% Similarity=0.109 Sum_probs=245.5
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHH
Q 003530 195 RTIVKFLSHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMA 274 (813)
Q Consensus 195 ~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~ 274 (813)
.-|..+|.+.....+..|..-|..+-....+. ....|..|+... +.+.++++..-.-|..-+..+.+-..+
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVa--skn~EVKkLVyvYLlrYAEeqpdLALL- 108 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVA--SKNIEVKKLVYVYLLRYAEEQPDLALL- 108 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhh--ccCHHHHHHHHHHHHHHhhcCCCceee-
Confidence 45788888888888888877666554433331 245677888887 889998887655554444333322211
Q ss_pred HcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhHHHHHhh-hHHHHHHHHhcCCHHHHHHHHHHHHHhhC-CcccHH
Q 003530 275 ENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVART-VGSCLINIMKSGNMQAREAALKALNQISS-CEPSAK 352 (813)
Q Consensus 275 ~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~-gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~~~~~ 352 (813)
-|..+-+-|.++++.+|..|.++|..+=. .+..- .+-++-+...+.++-++..|+.|+-.|-. .++.+.
T Consensus 109 ---SIntfQk~L~DpN~LiRasALRvlSsIRv------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~ 179 (968)
T KOG1060|consen 109 ---SINTFQKALKDPNQLIRASALRVLSSIRV------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD 179 (968)
T ss_pred ---eHHHHHhhhcCCcHHHHHHHHHHHHhcch------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH
Confidence 24566677888999999888887776421 11111 11233344566788999999999999877 445555
Q ss_pred HHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHH
Q 003530 353 VLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECK 432 (813)
Q Consensus 353 ~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~ 432 (813)
++. ..+-.+|.+. ++-+.-.|+.+.-.+|-.. -. +. .+-...|.++|..-++=-|-.
T Consensus 180 qL~-----e~I~~LLaD~-----splVvgsAv~AF~evCPer---ld---------LI-HknyrklC~ll~dvdeWgQvv 236 (968)
T KOG1060|consen 180 QLE-----EVIKKLLADR-----SPLVVGSAVMAFEEVCPER---LD---------LI-HKNYRKLCRLLPDVDEWGQVV 236 (968)
T ss_pred HHH-----HHHHHHhcCC-----CCcchhHHHHHHHHhchhH---HH---------Hh-hHHHHHHHhhccchhhhhHHH
Confidence 432 3344445443 4666667777776655422 11 11 344556666665444434445
Q ss_pred HHHHHHHcccCCCchHHHHHHHHhcC-------------------------CHHHHHHhhhCCChHHHHHHHHHHHHhCC
Q 003530 433 LLQVLVGLTSSPTTVLSVVSAIKSSG-------------------------ATISLVQFVEAPQNDLRLASIELIQNLSP 487 (813)
Q Consensus 433 a~~~L~~L~~~~~~~~~~~~~i~~~g-------------------------~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~ 487 (813)
.+..|..-|+..-..........+.. -++..-.+|.+.++.+..++++++..++.
T Consensus 237 lI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP 316 (968)
T KOG1060|consen 237 LINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAP 316 (968)
T ss_pred HHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCC
Confidence 55555555543100000000000000 13344457788888999999999999995
Q ss_pred CCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhhhccccccCCc
Q 003530 488 HMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSR 567 (813)
Q Consensus 488 ~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~ 567 (813)
.. . + . +.+++||++|.++. ++|...+..++.++...+.+ ++ |.+-.+.--.
T Consensus 317 ~~--~----~--~-~i~kaLvrLLrs~~---~vqyvvL~nIa~~s~~~~~l----F~----P~lKsFfv~s--------- 367 (968)
T KOG1060|consen 317 KN--Q----V--T-KIAKALVRLLRSNR---EVQYVVLQNIATISIKRPTL----FE----PHLKSFFVRS--------- 367 (968)
T ss_pred HH--H----H--H-HHHHHHHHHHhcCC---cchhhhHHHHHHHHhcchhh----hh----hhhhceEeec---------
Confidence 32 1 1 1 56789999999988 56666666665554433322 11 2222221110
Q ss_pred cch-hhhHhHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHHhcCCchHHHHHHHHHHhhhccccccccCCCCCCCCC
Q 003530 568 FVT-PFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSG 646 (813)
Q Consensus 568 ~~~-~~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~ls~~~~~l~~~~~~~~~~ 646 (813)
.++ .++-.=+.+|.+++ +..+... +++-|-...+++ +..+-..|..+|+..+....
T Consensus 368 sDp~~vk~lKleiLs~La-----~esni~~-----ILrE~q~YI~s~-d~~faa~aV~AiGrCA~~~~------------ 424 (968)
T KOG1060|consen 368 SDPTQVKILKLEILSNLA-----NESNISE-----ILRELQTYIKSS-DRSFAAAAVKAIGRCASRIG------------ 424 (968)
T ss_pred CCHHHHHHHHHHHHHHHh-----hhccHHH-----HHHHHHHHHhcC-chhHHHHHHHHHHHHHHhhC------------
Confidence 011 12222245666666 3333222 234555666666 54454445555554443211
Q ss_pred CCcccccccccCCCCCCCCcccccccCccccchhhhccchHHHHHhhccCchhHHHHHHHHHHhhhhcCcchhhHHHHHH
Q 003530 647 FCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLC 726 (813)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~ 726 (813)
-+...++..||++|.+.|..|...|+..+..|.+.... ++-
T Consensus 425 ---------------------------------sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~--~h~---- 465 (968)
T KOG1060|consen 425 ---------------------------------SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPA--EHL---- 465 (968)
T ss_pred ---------------------------------chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChH--HHH----
Confidence 01234788899999999999999999999999976541 111
Q ss_pred hhcCcHHHHHHHhhcCChHHHHHHHHHHHHHHcc
Q 003530 727 EAQGIKPILDVLLEKRTENLQRRAVWVVERILRT 760 (813)
Q Consensus 727 ~~~~v~~L~~ll~~~~~~~~~~~a~~aL~~i~~~ 760 (813)
..+..|.+++....-+..|..-+|+++.++..
T Consensus 466 --~ii~~La~lldti~vp~ARA~IiWLige~~e~ 497 (968)
T KOG1060|consen 466 --EILFQLARLLDTILVPAARAGIIWLIGEYCEI 497 (968)
T ss_pred --HHHHHHHHHhhhhhhhhhhceeeeeehhhhhh
Confidence 22345666663223355566667888777643
No 63
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=3.4e-05 Score=85.70 Aligned_cols=494 Identities=11% Similarity=0.096 Sum_probs=268.0
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhh-cc-CCccHH
Q 003530 194 VRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANL-EK-CENNVR 271 (813)
Q Consensus 194 i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L-~~-~~~~~~ 271 (813)
++.|.+. -++|...+..|-.-|.+++..+ .++.+..|...|.+...+...+..|--.|.|- .. +++-+.
T Consensus 4 ~~~le~t-lSpD~n~~~~Ae~~l~~~~~~n--------f~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~ 74 (859)
T KOG1241|consen 4 LELLEKT-LSPDQNVRKRAEKQLEQAQSQN--------FPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQ 74 (859)
T ss_pred HHHHHHH-cCCCcchHHHHHHHHHHHHhcc--------HHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHH
Confidence 4445553 3556777788877777776532 34566677777775444555666655566653 22 222222
Q ss_pred HHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCCc-cc
Q 003530 272 QMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCE-PS 350 (813)
Q Consensus 272 ~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~-~~ 350 (813)
...+ .-+....+.|..|... +.+-|.++.+.....|++++..++.-. ++
T Consensus 75 ~~~q--------------------------RWl~l~~e~reqVK~~----il~tL~~~ep~~~s~Aaq~va~IA~~ElP~ 124 (859)
T KOG1241|consen 75 QYQQ--------------------------RWLQLPAEIREQVKNN----ILRTLGSPEPRRPSSAAQCVAAIACIELPQ 124 (859)
T ss_pred HHHH--------------------------HHHcCCHHHHHHHHHH----HHHHcCCCCCCccchHHHHHHHHHHhhCch
Confidence 1111 1113334444444432 234455566666777888888877632 22
Q ss_pred HHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhc--CCChH
Q 003530 351 AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS--NTGPT 428 (813)
Q Consensus 351 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~--~~~~~ 428 (813)
. .-|-|+..|.+.-....+..+|+..+.+|..+|.+-... .+ .-.+..++..++.-.+ .++..
T Consensus 125 n-------~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pe-vl-------~~~sN~iLtaIv~gmrk~e~s~~ 189 (859)
T KOG1241|consen 125 N-------QWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE-VL-------EQQSNDILTAIVQGMRKEETSAA 189 (859)
T ss_pred h-------hCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH-HH-------HHHHhHHHHHHHhhccccCCchh
Confidence 2 223344433322111123368999999999998753321 10 1122345555555444 46778
Q ss_pred HHHHHHHHHHHcccC---CCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHH
Q 003530 429 IECKLLQVLVGLTSS---PTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLG 505 (813)
Q Consensus 429 ~~~~a~~~L~~L~~~---~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~ 505 (813)
+|-.|+.+|.+--.. ....+..| .-.++...+.-.+++.+++.+|..+|..+..--=+.+...+.+ ....
T Consensus 190 vRLaa~~aL~nsLef~~~nF~~E~er-----n~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~--alfa 262 (859)
T KOG1241|consen 190 VRLAALNALYNSLEFTKANFNNEMER-----NYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQ--ALFA 262 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHhhh-----ceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 999999999765332 11111222 2235556667778888999999988887662100111112222 1333
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHHH---HHh---------------cCcHHHHHHHhhhhccccccCCc
Q 003530 506 SLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQ---MLD---------------EGAFGLIFSRVKSIQLGETRGSR 567 (813)
Q Consensus 506 ~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~---l~~---------------~g~v~~L~~lL~~~~~~~~~~~~ 567 (813)
.-+.-+.++++ ++...+.-.=++++...-++... ..+ .+.+|.|+++|.....+ ...
T Consensus 263 itl~amks~~d--eValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~---~d~ 337 (859)
T KOG1241|consen 263 ITLAAMKSDND--EVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDED---DDD 337 (859)
T ss_pred HHHHHHcCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCC---ccc
Confidence 34455666664 77777766666554322221111 111 25677888888752111 111
Q ss_pred cchhhhHhHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHHhcCCchHHHHHHHHHHhhhccccccccCCCCCCCCCC
Q 003530 568 FVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGF 647 (813)
Q Consensus 568 ~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~ls~~~~~l~~~~~~~~~~~ 647 (813)
.+...-..+-..|.-++.. +.+.+.. .++|.+-+-++++ +..-+..|+.+++.+-......
T Consensus 338 DdWnp~kAAg~CL~l~A~~------~~D~Iv~-~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~----------- 398 (859)
T KOG1241|consen 338 DDWNPAKAAGVCLMLFAQC------VGDDIVP-HVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPD----------- 398 (859)
T ss_pred ccCcHHHHHHHHHHHHHHH------hcccchh-hhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchh-----------
Confidence 1223333333344444411 1111111 2344444455566 8888999999987664322111
Q ss_pred CcccccccccCCCCCCCCcccccccCccccchhhhccchHHHHHhhccCchhHHHHHHHHHHhhhhcCcchhhHHHHHHh
Q 003530 648 CASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCE 727 (813)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~~ 727 (813)
.......++++.++.++.++..-|+..++++|+.++.- .. +........
T Consensus 399 -----------------------------~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~-l~-e~~~n~~~l 447 (859)
T KOG1241|consen 399 -----------------------------KLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADF-LP-EAIINQELL 447 (859)
T ss_pred -----------------------------hhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhh-ch-hhcccHhhh
Confidence 11123567999999999999999999999999999843 21 111122334
Q ss_pred hcCcHHHHHHHhhcCChHHHHHHHHHHHHHHcc--hhhhhh-hcCC-CcchHHHHHHh----h--h-cCchhHHHHHHHH
Q 003530 728 AQGIKPILDVLLEKRTENLQRRAVWVVERILRT--DDIAYE-VSGD-PNVSTALVDAF----Q--H-ADYRTRQIAERAL 796 (813)
Q Consensus 728 ~~~v~~L~~ll~~~~~~~~~~~a~~aL~~i~~~--~~~~~~-~~~~-~~~~~~Lv~~l----~--~-~~~~~~~~Aa~~L 796 (813)
.+-+..+++-| +..+.+-.++.|++..+... +..... .... ......+|+.| . + .+.+.|..|=.+|
T Consensus 448 ~~~l~~l~~gL--~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeAL 525 (859)
T KOG1241|consen 448 QSKLSALLEGL--NDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEAL 525 (859)
T ss_pred hHHHHHHHHHh--hhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHH
Confidence 45566677766 46788999999999999844 111111 0000 01223444433 2 2 2358999999999
Q ss_pred HHhcccCCC
Q 003530 797 KHIDKIPNF 805 (813)
Q Consensus 797 ~~l~~~~~~ 805 (813)
-.|-+....
T Consensus 526 mElIk~st~ 534 (859)
T KOG1241|consen 526 MELIKNSTD 534 (859)
T ss_pred HHHHHcCcH
Confidence 988776443
No 64
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=2.1e-06 Score=88.22 Aligned_cols=187 Identities=21% Similarity=0.192 Sum_probs=155.1
Q ss_pred CCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCC-chhHHHHHhhh-HHHHH
Q 003530 246 KSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALN-SDVKVLVARTV-GSCLI 323 (813)
Q Consensus 246 ~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g-i~~Lv 323 (813)
++.+.+-++.|..-|..+..+-+|...+...|+..+++.++.+.+..+|+.|+++|+.+..+ +..+..+-+.| .+.|+
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 36677888888888888888889999999999999999999999999999999999999985 56777777765 89999
Q ss_pred HHHhc-CCHHHHHHHHHHHHHhhCC-cccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccc
Q 003530 324 NIMKS-GNMQAREAALKALNQISSC-EPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSIT 401 (813)
Q Consensus 324 ~lL~~-~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 401 (813)
.+|.+ ++..++..|+.|+.+|-++ +.....+...+|...|...|++.+ .+...+..++..+..|.........
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~---~~~~lkrK~~~Ll~~Ll~~~~s~~d-- 247 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNN---TSVKLKRKALFLLSLLLQEDKSDED-- 247 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCC---cchHHHHHHHHHHHHHHHhhhhhhh--
Confidence 99976 4556789999999999985 577788889999999999999843 3588999999999999886654443
Q ss_pred cCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccC
Q 003530 402 VGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSS 443 (813)
Q Consensus 402 ~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 443 (813)
.+...++...++.+..+.+..+++.++.++..+...
T Consensus 248 ------~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 248 ------IASSLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred ------HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 345566777777787788888999988888766543
No 65
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=0.00024 Score=81.11 Aligned_cols=595 Identities=15% Similarity=0.147 Sum_probs=321.7
Q ss_pred ccCcHHHHHHHhc--C-------CCHHHHHHHHHHHHHhh-ccCcchhhhhhcCCCHHHHHHHhccC-----------c-
Q 003530 148 NSELIPMIIDMLK--S-------SSRKVRCTALETLRIVV-EEDDDNKEILGQGDTVRTIVKFLSHE-----------L- 205 (813)
Q Consensus 148 ~~g~i~~Lv~lL~--s-------~~~~~~~~al~~L~~L~-~~~~~~~~~i~~~g~i~~Lv~lL~~~-----------~- 205 (813)
+..+.|.|++.+. . .+..-..-|+..|.++. ..+.-|-+.++..|+++.|..+++.. +
T Consensus 1373 KYAGYPMLi~tiT~e~~D~~lfSk~~~PLL~AA~ELa~~T~~~SaLNaEELrRdnGle~L~tafSRCv~Vvt~~s~p~dm 1452 (2235)
T KOG1789|consen 1373 KYAGYPMLIKTITLEAKDEALFSKGGGPLLSAAIELANYTLISSALNAEELRRDNGLEALVTAFSRCVPVVTMSSLPDDM 1452 (2235)
T ss_pred ccCcchhhhhhhhhcccchhhhcCCCCcchHHHHHHHHHHHhhhhcCHHHHhhcccHHHHHHHHhhhheeeccccCCCcc
Confidence 3456788887652 1 11112334455555442 23346788999999999999988632 1
Q ss_pred -HHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHH
Q 003530 206 -SREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLT 284 (813)
Q Consensus 206 -~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~ 284 (813)
..+..+...++.-.+..++.|+.+...+..|.-|++++.- +.-|.+...++.++..++.+..-+..+.++|++-.|+.
T Consensus 1453 av~vc~~v~~c~SVaaQFE~cR~~~~EmPSiI~Dl~r~l~f-~~vPr~~~aa~qci~~~aVd~~LQ~~LfqAG~LWYlLp 1531 (2235)
T KOG1789|consen 1453 AVRVCIHVCDCFSVAAQFEACRQRLMEMPSIIGDLTRLLQF-SNLPRLSTAAAQCIRAMAVDTLLQFQLFQAGVLWYLLP 1531 (2235)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh-ccccHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHH
Confidence 1234455666777778889999998888899999999874 56788999999999999999999999999999999998
Q ss_pred HHccCC--------------------HHHHHHHHHHHHHhcC---Cc----hh---HHHHHhhhHHH------------H
Q 003530 285 QILEGP--------------------QETKLSLAAFLGDLAL---NS----DV---KVLVARTVGSC------------L 322 (813)
Q Consensus 285 lL~~~~--------------------~~~~~~a~~~L~~L~~---~~----~~---~~~i~~~gi~~------------L 322 (813)
+|-.-| .+....+..+|..|+. ++ +| +..+...--|. +
T Consensus 1532 ~Lf~YDyTlEESg~q~Se~~n~Q~~aNslA~~s~~ALSRL~G~~AdE~~TP~N~T~~~sL~alLTPyiAr~Lk~e~~~~i 1611 (2235)
T KOG1789|consen 1532 HLFHYDYTLEESGVQHSEDSNKQSLANSLARSSCEALSRLAGFRADEENTPDNDTVQASLRALLTPYIARCLKLETNDMV 1611 (2235)
T ss_pred HHhcccccccccCccccccchHHHHHHHHHHHHHHHHHHHhccccccccCCCChhHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 875421 1223345667777653 11 22 22221110133 3
Q ss_pred HHHHhcC--CHH------HHHHHHHHH----HHhhCCc----cc----------HHHHH-----------------Hc-C
Q 003530 323 INIMKSG--NMQ------AREAALKAL----NQISSCE----PS----------AKVLI-----------------HA-G 358 (813)
Q Consensus 323 v~lL~~~--~~~------~~~~a~~aL----~~Ls~~~----~~----------~~~i~-----------------~~-g 358 (813)
+++|.+. ++. .+..-+..+ .+.+.+. .+ ++.++ +- .
T Consensus 1612 Lk~LNsN~E~Py~IWNn~TRaELLeFve~Qracq~~~G~~D~~yg~eF~Ys~h~KEliVG~ifirVYNeqPtf~l~ePk~ 1691 (2235)
T KOG1789|consen 1612 LKTLNSNMENPYMIWNNGTRAELLEFVERQRACQTSNGPTDELYGAEFEYSVHKKELIVGDIFIRVYNEQPTFALHEPKK 1691 (2235)
T ss_pred HHHhhcCCCCceeeecCccHHHHHHHHHHHHhccCCCCCchhhccceeeehhhccceeeeeEEEEeecCCCchhhcCcHH
Confidence 3344331 111 111111111 0111100 00 00000 00 0
Q ss_pred ChHHHHHHHhcc-----------------------------CCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccc
Q 003530 359 ILPPLVKDLFTV-----------------------------GSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTL 409 (813)
Q Consensus 359 ~i~~Lv~lL~~~-----------------------------~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l 409 (813)
.-..|++.+.+. +..-++..-.+.++.+|.|+....++...+-- ...
T Consensus 1692 Fa~~LlDyI~S~~~~l~~~~~~~~~s~d~ie~~~~V~sE~HgD~lPs~~~v~m~LtAL~Nli~~nPdlasvfg----Se~ 1767 (2235)
T KOG1789|consen 1692 FAIDLLDYIKSHSAELTGAPKPKAISDDLIEIDWGVGSEAHGDSLPTETKVLMTLTALANLVSANPDLASVFG----SEI 1767 (2235)
T ss_pred HHHHHHHHHHHhHHHhcCCCCccccccchhhhhcccchhhhcCCCChHHHHHHHHHHHHHHHhhCcchhhhcc----chh
Confidence 001233332221 00012223456778889998887665443100 001
Q ss_pred cchhhHHHHHHhhc-CCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCC
Q 003530 410 VSEDIVHNLLHLIS-NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPH 488 (813)
Q Consensus 410 ~~~~~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~ 488 (813)
.--|..+-+..+|. .+++.++.-|+.++..++.+.. ....+.+.+.+..|+.+|.+ -+..|..+...|..|+..
T Consensus 1768 ~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~----Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~ 1842 (2235)
T KOG1789|consen 1768 LLIGNFPLLITYLRCRKHPKLQILALQVILLATANKE----CVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSN 1842 (2235)
T ss_pred hhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccH----HHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcC
Confidence 11233445555555 5788999999999988887754 45567778888888888865 577888899999999853
Q ss_pred CCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCC---CCHHHHHHHHhcCcHH-HHHHHhhhhcccccc
Q 003530 489 MGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPE---RDLGLTRQMLDEGAFG-LIFSRVKSIQLGETR 564 (813)
Q Consensus 489 ~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~---~~~~~~~~l~~~g~v~-~L~~lL~~~~~~~~~ 564 (813)
++-..+.+.. |++.-+..++-.++. ...|+.|+.+++.+.. ..+..+-.+++ .+| .+++.+.+
T Consensus 1843 -~~i~keA~~h--g~l~yil~~~c~~~~-~QqRAqaAeLlaKl~Adkl~GPrV~ITL~k--FLP~~f~d~~RD------- 1909 (2235)
T KOG1789|consen 1843 -GQIGKEALEH--GGLMYILSILCLTNS-DQQRAQAAELLAKLQADKLTGPRVTITLIK--FLPEIFADSLRD------- 1909 (2235)
T ss_pred -cHHHHHHHhc--CchhhhhHHHhccCc-HHHHHHHHHHHHHhhhccccCCceeeehHH--hchHHHHHHHhc-------
Confidence 4444455543 788888888777775 6899999999999864 22333222221 111 13333332
Q ss_pred CCccchhhhHhHHHHHHHHhcc--CCCChHHHHHHHHcCchHHHH-HHHhcC-CchHHHHHHHHHHhhhccccccccCCC
Q 003530 565 GSRFVTPFLEGLLSVLARVTFV--LSDEPDAIALCCEHNLAALFI-ELLQSN-GLDKVQMVSATALENLSLESKNLTKLP 640 (813)
Q Consensus 565 ~~~~~~~~~e~a~~aL~~~~~~--l~~~~~~~~~~~~~~~i~~L~-~lL~~~-~~~~vk~~Aa~aL~~ls~~~~~l~~~~ 640 (813)
.+ |+++.++-.-+.. |-+++..++.+. +.|...+ ++.+.. .++.++ .++-+.+....+..
T Consensus 1910 -----~P--EAaVH~fE~T~EnPELiWn~~~r~kvS--~~i~tM~~~~y~~QQk~p~~~-------W~~PEqsAg~~Ea~ 1973 (2235)
T KOG1789|consen 1910 -----SP--EAAVHMFESTSENPELIWNEVTRQKVS--GIIDTMVGKLYEQQQKDPTVK-------WNTPEQSAGTSEAD 1973 (2235)
T ss_pred -----CH--HHHHHHHhccCCCcccccCHhHHHHHH--HHHHHHHHHHHHHhccCCccc-------ccCchhhcchhhhc
Confidence 11 6666666654421 112333333332 2333222 121111 011111 00000000000000
Q ss_pred CCCCCCCCcccccccccCCCCCCCCcccccccCccccchhhhccchHHHHHhhccCch--hHHHHHHHHHHhhhhcCcch
Q 003530 641 ELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNE--KVVEASLAALSTVIDDGVDI 718 (813)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gai~~Lv~lL~~~~~--~v~~~A~~AL~~L~~~~~~~ 718 (813)
. .+.|....++.|...|. ...+.. -..-.|-++.+..++..+++ ....--..|+-.|..-+.
T Consensus 1974 ~--E~aVGG~~~R~Fi~~P~-----------f~LR~P-k~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP-- 2037 (2235)
T KOG1789|consen 1974 K--ECAVGGSINREFVVGPG-----------FNLRHP-KLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHP-- 2037 (2235)
T ss_pred c--CcccchhhhHHHhhCCC-----------CcccCH-HHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCc--
Confidence 0 00011122223322221 000000 01113456667777765443 233333334444443333
Q ss_pred hhHHHHHHhhcCcHHHHHHHhhcCChHHHHHHHHHHHHHHcchhhhhhhcCCCcchHHHHHHhhhcCchhHHHHHHHHHH
Q 003530 719 EQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 798 (813)
Q Consensus 719 ~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~~a~~aL~~i~~~~~~~~~~~~~~~~~~~Lv~~l~~~~~~~~~~Aa~~L~~ 798 (813)
.-+..+-..|=+|+++..+ ...+..+-..|...|+.+....-+.+...+.... .+++..+...-..+. .|+.+|.+
T Consensus 2038 -~LADqip~LGylPK~~~Am-~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i-~~~m~~mkK~~~~~G-LA~EalkR 2113 (2235)
T KOG1789|consen 2038 -NLADQLPSLGYLPKFCTAM-CLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCI-DGIMKSMKKQPSLMG-LAAEALKR 2113 (2235)
T ss_pred -chhhhCCCccchHHHHHHH-HhcCCcCcHHHHHHHHHHhhccHHHHHHhccccc-hhhHHHHHhcchHHH-HHHHHHHH
Confidence 2345666779999999999 4888888889999999998776555544333333 457777766544333 77888877
Q ss_pred hcc
Q 003530 799 IDK 801 (813)
Q Consensus 799 l~~ 801 (813)
+.+
T Consensus 2114 ~~~ 2116 (2235)
T KOG1789|consen 2114 LMK 2116 (2235)
T ss_pred HHH
Confidence 765
No 66
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.56 E-value=2.9e-08 Score=98.34 Aligned_cols=69 Identities=22% Similarity=0.357 Sum_probs=62.5
Q ss_pred CceecccccccCCCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCcccHhhHHHHHHHHHhhh
Q 003530 31 DAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNPSIALRNTIEEWNARNE 105 (813)
Q Consensus 31 ~~~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~~~~~~~ 105 (813)
+-++|-||.++|+-||++|||||||.-||..++.. .+.||.|..++.+.+|+.|..+.++|+.+....+
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~------~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~R~ 90 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY------KPQCPTCCVTVTESDLRNNRILDEIVKSLNFARN 90 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc------CCCCCceecccchhhhhhhhHHHHHHHHHHHHHH
Confidence 34899999999999999999999999999999985 4899999999999999999999999999865443
No 67
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.56 E-value=9.9e-06 Score=84.34 Aligned_cols=362 Identities=12% Similarity=0.062 Sum_probs=222.5
Q ss_pred ChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHH
Q 003530 359 ILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLV 438 (813)
Q Consensus 359 ~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~ 438 (813)
.+.+++.++.... .++..+..+..+.-+-+.+..+...-.+.. .-.....-+.++.+|..++.-+.+...+++.
T Consensus 66 ~v~~fi~LlS~~~----kdd~v~yvL~li~DmLs~d~sr~~lf~~~a--~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils 139 (442)
T KOG2759|consen 66 YVKTFINLLSHID----KDDTVQYVLTLIDDMLSEDRSRVDLFHDYA--HKLKRTEWLSFLNLLNRQDTFIVEMSFRILS 139 (442)
T ss_pred HHHHHHHHhchhh----hHHHHHHHHHHHHHHHhhCchHHHHHHHHH--HhhhccchHHHHHHHhcCChHHHHHHHHHHH
Confidence 4556666665432 356666666666666555544332100000 0011223567888999999999988899998
Q ss_pred HcccCCCchHHHHHHHHhcCCHHHHHHhhhC-CChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCC
Q 003530 439 GLTSSPTTVLSVVSAIKSSGATISLVQFVEA-PQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGI 517 (813)
Q Consensus 439 ~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~ 517 (813)
.++............. -....|..++.+ .+++-...|+++|..+... ++....+... .++..|+..+.++...
T Consensus 140 ~la~~g~~~~~~~e~~---~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~--~eyR~~~v~a-dg~~~l~~~l~s~~~~ 213 (442)
T KOG2759|consen 140 KLACFGNCKMELSELD---VYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV--DEYRYAFVIA-DGVSLLIRILASTKCG 213 (442)
T ss_pred HHHHhccccccchHHH---HHHHHHHHHHhccCCCchHHHHHHHHHHHhcC--cchhheeeec-CcchhhHHHHhccCcc
Confidence 8877643210000000 013445566666 4557778888899888853 2333444444 6889999998533322
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhhhccccccCCccchhhhHhHHHHHHHHhccCCCCh----HH
Q 003530 518 SKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEP----DA 593 (813)
Q Consensus 518 ~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~----~~ 593 (813)
...+.....++.-|+. ++...+.+...+.++.|.++++.. .++.+..-+++++.|+...- .+. +.
T Consensus 214 ~QlQYqsifciWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~---------~KEKV~Rivlai~~Nll~k~-~~~~~~k~~ 282 (442)
T KOG2759|consen 214 FQLQYQSIFCIWLLTF-NPHAAEKLKRFDLIQDLSDIVKES---------TKEKVTRIVLAIFRNLLDKG-PDRETKKDI 282 (442)
T ss_pred hhHHHHHHHHHHHhhc-CHHHHHHHhhccHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhccC-chhhHHHHH
Confidence 4788888888888888 677778888999999999999873 35677778888999988541 012 33
Q ss_pred HHHHHHcCchHHHHHHHhcC-CchHHHHHHHHHHhhhccccccccCCCCCCCCCCCccc-ccccccCCCCCCCCcccccc
Q 003530 594 IALCCEHNLAALFIELLQSN-GLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASI-FPCFSKQPVITGLCRLHRGL 671 (813)
Q Consensus 594 ~~~~~~~~~i~~L~~lL~~~-~~~~vk~~Aa~aL~~ls~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 671 (813)
...++..++.+.+-.|.+.. +++.+...--.--..|-.+...++..++... .+ -..+ .-.|+|...
T Consensus 283 ~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~s-----El~sG~L-------~WSP~Hk~e 350 (442)
T KOG2759|consen 283 ASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKS-----ELRSGRL-------EWSPVHKSE 350 (442)
T ss_pred HHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHH-----HHHhCCc-------CCCcccccc
Confidence 34566677766665444432 2555444333333333333333332221000 00 0001 112455432
Q ss_pred c-Cccccchhhh--ccchHHHHHhhc-cCchhHHHHHHHHHHhhhhcCcchhhHHHHHHhhcCcHHHHHHHhhcCChHHH
Q 003530 672 C-SLKETFCLLE--GHAVEKLIALLD-HTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQ 747 (813)
Q Consensus 672 ~-~~~~~~~l~~--~gai~~Lv~lL~-~~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~ 747 (813)
. .-.+..++-+ -..+..|+.+|+ +.|+-+...|+.=++.+..... ++...+.+.||=+.+.+++ .++|++++
T Consensus 351 ~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP---~gk~vv~k~ggKe~vM~Ll-nh~d~~Vr 426 (442)
T KOG2759|consen 351 KFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYP---EGKAVVEKYGGKERVMNLL-NHEDPEVR 426 (442)
T ss_pred chHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCc---hHhHHHHHhchHHHHHHHh-cCCCchHH
Confidence 1 1111111111 225778999999 5668899999999999987655 4778999999999999999 69999999
Q ss_pred HHHHHHHHHHHc
Q 003530 748 RRAVWVVERILR 759 (813)
Q Consensus 748 ~~a~~aL~~i~~ 759 (813)
-.|.-|++++..
T Consensus 427 y~ALlavQ~lm~ 438 (442)
T KOG2759|consen 427 YHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHHh
Confidence 999999998853
No 68
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.56 E-value=4.7e-05 Score=79.46 Aligned_cols=327 Identities=12% Similarity=0.112 Sum_probs=215.9
Q ss_pred CcHHHHHHHhcCC-CHHHHHHHHHHHHHhhccCcchhhhhhc-------CCCHHHHHHHhccCcHHHHHHHHHHHHHhhc
Q 003530 150 ELIPMIIDMLKSS-SRKVRCTALETLRIVVEEDDDNKEILGQ-------GDTVRTIVKFLSHELSREREEAVSLLYELSK 221 (813)
Q Consensus 150 g~i~~Lv~lL~s~-~~~~~~~al~~L~~L~~~~~~~~~~i~~-------~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~ 221 (813)
..+..++.+++.. .++.....+..+-.+-..+ ..+..+.. .-.-+..+.+|...+.-..+.+.+++..++.
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d-~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~ 143 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSED-RSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLAC 143 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 3466777887643 3555555666666555443 33333322 2236778899999998888888888888876
Q ss_pred CchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHcc--CCHHHHHHHHH
Q 003530 222 SEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILE--GPQETKLSLAA 299 (813)
Q Consensus 222 ~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~--~~~~~~~~a~~ 299 (813)
....+-......=-...|-..+.+ +.+++...-++.+|..+...++.|..++.+.++..++..+.+ .+-.++-....
T Consensus 144 ~g~~~~~~~e~~~~~~~l~~~l~~-~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsif 222 (442)
T KOG2759|consen 144 FGNCKMELSELDVYKGFLKEQLQS-STNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIF 222 (442)
T ss_pred hccccccchHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHH
Confidence 543322211111123344455553 577888889999999999999999999999999999999943 37788999999
Q ss_pred HHHHhcCCchhHHHHHhhh-HHHHHHHHhc-CCHHHHHHHHHHHHHhhCCc-------ccHHHHHHcCChHHHHHHHhcc
Q 003530 300 FLGDLALNSDVKVLVARTV-GSCLINIMKS-GNMQAREAALKALNQISSCE-------PSAKVLIHAGILPPLVKDLFTV 370 (813)
Q Consensus 300 ~L~~L~~~~~~~~~i~~~g-i~~Lv~lL~~-~~~~~~~~a~~aL~~Ls~~~-------~~~~~i~~~g~i~~Lv~lL~~~ 370 (813)
+++.|+.++...+.+...+ ++.|.+++++ ..+++.+-++.++.|+.... +....|+..++.+. +..|...
T Consensus 223 ciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~-l~~L~~r 301 (442)
T KOG2759|consen 223 CIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKT-LQSLEER 301 (442)
T ss_pred HHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHH-HHHHHhc
Confidence 9999999998877776655 7999999976 46788999999999999865 23345566655554 4555443
Q ss_pred CCCCCChhHHHHHHHHHHHH-------HhcCC----------CCcccccCC-------CCcccc--chhhHHHHHHhhcC
Q 003530 371 GSNHLPMRLKEVSATILANV-------VNSGH----------DFDSITVGP-------DNQTLV--SEDIVHNLLHLISN 424 (813)
Q Consensus 371 ~~~~~~~~~~~~a~~~L~nL-------~~~~~----------~~~~~~~~~-------~~~~l~--~~~~v~~Lv~lL~~ 424 (813)
.-+ ++++.+..-.+-..| ++.+. .|.. +++ |...+. .-..+..|+++|..
T Consensus 302 kys--DEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP--~Hk~e~FW~eNa~rlnennyellkiL~~lLe~ 377 (442)
T KOG2759|consen 302 KYS--DEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSP--VHKSEKFWRENADRLNENNYELLKILIKLLET 377 (442)
T ss_pred CCC--cHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCc--cccccchHHHhHHHHhhccHHHHHHHHHHHhc
Confidence 311 234333222211111 11100 0110 000 001111 12357788888884
Q ss_pred -CChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhC
Q 003530 425 -TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLS 486 (813)
Q Consensus 425 -~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls 486 (813)
.+|.+..-|+.=+.....+-. +-+..+.+-||=+.+++++++++++||.+|..++..|.
T Consensus 378 s~Dp~iL~VAc~DIge~Vr~yP---~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 378 SNDPIILCVACHDIGEYVRHYP---EGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred CCCCceeehhhhhHHHHHHhCc---hHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 457777777777777666533 34566777899999999999999999999998887654
No 69
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.55 E-value=6.9e-08 Score=68.30 Aligned_cols=40 Identities=38% Similarity=0.913 Sum_probs=36.2
Q ss_pred cccccccCCCce-ecCCCchhcHHHHHHHHHHhhhCCCCCCCCCC
Q 003530 35 CPLTKQVMRDPV-TLENGQTFEREAIEKWFKECRENGRKPVCPLT 78 (813)
Q Consensus 35 Cpi~~~~m~dpv-~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t 78 (813)
||||.+.+.+|+ +++|||+||+.||.+|++. .+. ..||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~---~~~-~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLEN---SGS-VKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHH---TSS-SBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHh---cCC-ccCCcC
Confidence 899999999999 8999999999999999995 343 789986
No 70
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=6.3e-08 Score=92.70 Aligned_cols=77 Identities=29% Similarity=0.453 Sum_probs=70.3
Q ss_pred cccCCCCCceecccccccCCCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCcccHhhHHHHHHHHHh
Q 003530 24 LHIEPIYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNPSIALRNTIEEWNAR 103 (813)
Q Consensus 24 ~~~~~~~~~~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~~~~~ 103 (813)
-...++|+-++|.|+.++|+|||+.|+|.||+|.-|++++.. -| .+.|+|+.++..-.++||.+++..|..|...
T Consensus 203 rk~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~r---vg--hfdpvtr~~Lte~q~ipN~alkevIa~fl~~ 277 (284)
T KOG4642|consen 203 RKKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQR---VG--HFDPVTRWPLTEYQLIPNLALKEVIAAFLKE 277 (284)
T ss_pred hccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHH---hc--cCCchhcccCCHHhhccchHHHHHHHHHHHh
Confidence 346778999999999999999999999999999999999987 45 5899999999989999999999999999887
Q ss_pred hh
Q 003530 104 NE 105 (813)
Q Consensus 104 ~~ 105 (813)
|.
T Consensus 278 n~ 279 (284)
T KOG4642|consen 278 NE 279 (284)
T ss_pred cc
Confidence 65
No 71
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.52 E-value=1.8e-05 Score=86.14 Aligned_cols=118 Identities=10% Similarity=-0.036 Sum_probs=62.8
Q ss_pred HHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHH
Q 003530 460 TISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLT 539 (813)
Q Consensus 460 i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~ 539 (813)
+..|+..|.+.++.++..++.+|..+-. . +....|+.+|.++++ .++..++.+++...
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~------------~-~a~~~L~~~L~~~~p--~vR~aal~al~~r~------- 145 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGG------------R-QAEPWLEPLLAASEP--PGRAIGLAALGAHR------- 145 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCc------------h-HHHHHHHHHhcCCCh--HHHHHHHHHHHhhc-------
Confidence 5566666666666666666666654321 1 345556666666554 56665555554411
Q ss_pred HHHHhcCcHHHHHHHhhhhccccccCCccchhhhHhHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHHhcCCchHHH
Q 003530 540 RQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQ 619 (813)
Q Consensus 540 ~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~vk 619 (813)
....+.+..+|++ .+..+...++.+|..+.. ...+|.|...+.+. ++.|+
T Consensus 146 -----~~~~~~L~~~L~d----------~d~~Vra~A~raLG~l~~--------------~~a~~~L~~al~d~-~~~VR 195 (410)
T TIGR02270 146 -----HDPGPALEAALTH----------EDALVRAAALRALGELPR--------------RLSESTLRLYLRDS-DPEVR 195 (410)
T ss_pred -----cChHHHHHHHhcC----------CCHHHHHHHHHHHHhhcc--------------ccchHHHHHHHcCC-CHHHH
Confidence 1223455555543 233455555555554431 13344455555665 66666
Q ss_pred HHHHHHHhhh
Q 003530 620 MVSATALENL 629 (813)
Q Consensus 620 ~~Aa~aL~~l 629 (813)
..|+.++..+
T Consensus 196 ~aA~~al~~l 205 (410)
T TIGR02270 196 FAALEAGLLA 205 (410)
T ss_pred HHHHHHHHHc
Confidence 6666666433
No 72
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.7e-05 Score=81.64 Aligned_cols=184 Identities=20% Similarity=0.134 Sum_probs=148.4
Q ss_pred cCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCc-hhHhHHhhhhchHHH
Q 003530 160 KSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSE-ALCEKIGSINGAILI 238 (813)
Q Consensus 160 ~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~ 238 (813)
.+.+.+-+..|+.-|..++.+- +|...+...|+...++..|.+.+..+|..|+++|..++.+. ...+.+. +.|+++.
T Consensus 93 ~s~~le~ke~ald~Le~lve~i-DnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~-E~~~L~~ 170 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDI-DNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVI-ELGALSK 170 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhh-hhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHH-HcccHHH
Confidence 3457888999999999998865 78888999999999999999999999999999999998765 5556665 5799999
Q ss_pred HHHhcccCCCCHHHHHHHHHHHHhhcc-CCccHHHHHHcCChHHHHHHHccC--CHHHHHHHHHHHHHhcCCc-hhHHHH
Q 003530 239 LVGMTSSKSENLLTVEKAEKTLANLEK-CENNVRQMAENGRLQPLLTQILEG--PQETKLSLAAFLGDLALNS-DVKVLV 314 (813)
Q Consensus 239 Lv~lL~~~s~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~G~i~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~-~~~~~i 314 (813)
|+..|.. +.+..++..|..+++.|-. ++.....+...++...|...|.++ +..++..++..+..|...+ ..+..+
T Consensus 171 Ll~~ls~-~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 171 LLKILSS-DDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHHHHcc-CCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 9999983 6667788999999999975 455678888999999999999994 6778888999999998743 344444
Q ss_pred HhhhH-HHHHHHHhcCCHHHHHHHHHHHHHhhC
Q 003530 315 ARTVG-SCLINIMKSGNMQAREAALKALNQISS 346 (813)
Q Consensus 315 ~~~gi-~~Lv~lL~~~~~~~~~~a~~aL~~Ls~ 346 (813)
...+. ..+..+....+.++.+.+..++..+..
T Consensus 250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 44565 445555566677888888888776655
No 73
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.45 E-value=1.2e-07 Score=70.20 Aligned_cols=47 Identities=30% Similarity=0.544 Sum_probs=40.5
Q ss_pred CceecccccccCCCceecCCCch-hcHHHHHHHHHHhhhCCCCCCCCCCCcCCC
Q 003530 31 DAFVCPLTKQVMRDPVTLENGQT-FEREAIEKWFKECRENGRKPVCPLTQKELR 83 (813)
Q Consensus 31 ~~~~Cpi~~~~m~dpv~~~~g~t-~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~ 83 (813)
+++.|+||.+.+.++++.||||. ||..|+.+|+.. ...||+|++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~------~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKR------KKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT------TSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhccc------CCCCCcCChhhc
Confidence 35789999999999999999999 999999999985 478999998764
No 74
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.45 E-value=5.1e-05 Score=82.65 Aligned_cols=241 Identities=14% Similarity=0.026 Sum_probs=173.3
Q ss_pred CcHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhH
Q 003530 150 ELIPMIIDMLK-SSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEK 228 (813)
Q Consensus 150 g~i~~Lv~lL~-s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~ 228 (813)
.+++.++..|. .++.+++..++.++.. .++ ..+++.|+..|.+.+..++..++.+|..+
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~--~~~---------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i--------- 113 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLA--QED---------ALDLRSVLAVLQAGPEGLCAGIQAALGWL--------- 113 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhc--cCC---------hHHHHHHHHHhcCCCHHHHHHHHHHHhcC---------
Confidence 46888999994 5667776655554431 111 12489999999999999999999999865
Q ss_pred HhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc
Q 003530 229 IGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNS 308 (813)
Q Consensus 229 i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 308 (813)
...++.+.|+.+|. +.++.++..++.++.. ......++++.+|++.++.++..++.+|+.+...+
T Consensus 114 --~~~~a~~~L~~~L~--~~~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~ 178 (410)
T TIGR02270 114 --GGRQAEPWLEPLLA--ASEPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELPRRL 178 (410)
T ss_pred --CchHHHHHHHHHhc--CCChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhcccc
Confidence 34578899999998 8899999888877755 11235679999999999999999999999875321
Q ss_pred hhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHH
Q 003530 309 DVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILA 388 (813)
Q Consensus 309 ~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~ 388 (813)
.++.|...+.+.++.++..|+.+|..+.. + .++..++.+....+ ......+..++.
T Consensus 179 ---------a~~~L~~al~d~~~~VR~aA~~al~~lG~-~---------~A~~~l~~~~~~~g-----~~~~~~l~~~la 234 (410)
T TIGR02270 179 ---------SESTLRLYLRDSDPEVRFAALEAGLLAGS-R---------LAWGVCRRFQVLEG-----GPHRQRLLVLLA 234 (410)
T ss_pred ---------chHHHHHHHcCCCHHHHHHHHHHHHHcCC-H---------hHHHHHHHHHhccC-----ccHHHHHHHHHH
Confidence 36778888999999999999999977644 1 23455555444322 333334444443
Q ss_pred HHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhh
Q 003530 389 NVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVE 468 (813)
Q Consensus 389 nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~ 468 (813)
.. . ....++.|..+++.. .++..++.+|..+-.. ..++.|+..+.
T Consensus 235 l~-~------------------~~~a~~~L~~ll~d~--~vr~~a~~AlG~lg~p--------------~av~~L~~~l~ 279 (410)
T TIGR02270 235 VA-G------------------GPDAQAWLRELLQAA--ATRREALRAVGLVGDV--------------EAAPWCLEAMR 279 (410)
T ss_pred hC-C------------------chhHHHHHHHHhcCh--hhHHHHHHHHHHcCCc--------------chHHHHHHHhc
Confidence 22 1 135688899998764 4888888888755432 34788888887
Q ss_pred CCChHHHHHHHHHHHHhC
Q 003530 469 APQNDLRLASIELIQNLS 486 (813)
Q Consensus 469 ~~~~~v~~~A~~~L~~Ls 486 (813)
++ .+++.|..++..++
T Consensus 280 d~--~~aR~A~eA~~~It 295 (410)
T TIGR02270 280 EP--PWARLAGEAFSLIT 295 (410)
T ss_pred Cc--HHHHHHHHHHHHhh
Confidence 54 48999999998887
No 75
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=2e-07 Score=89.02 Aligned_cols=58 Identities=21% Similarity=0.449 Sum_probs=50.5
Q ss_pred CCceecccccccCCCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCccc
Q 003530 30 YDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNPS 90 (813)
Q Consensus 30 ~~~~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~~l~pn 90 (813)
...|.|-||.+.-+|||++.|||-||=.||.+|+.. ......||+|+..+....++|-
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~---~~~~~~cPVCK~~Vs~~~vvPl 102 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQT---RPNSKECPVCKAEVSIDTVVPL 102 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhh---cCCCeeCCccccccccceEEee
Confidence 456999999999999999999999999999999986 3334789999998887777774
No 76
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.43 E-value=0.0015 Score=74.46 Aligned_cols=405 Identities=14% Similarity=0.132 Sum_probs=229.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCch--hHhH
Q 003530 151 LIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSEA--LCEK 228 (813)
Q Consensus 151 ~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~--~~~~ 228 (813)
..+.+++.| ++.-.|..|++++..++...-..-..=.-..+++.+...|+......+.....++..|..+.. ....
T Consensus 612 ~L~il~eRl--~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~ 689 (1233)
T KOG1824|consen 612 TLPILLERL--GNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAE 689 (1233)
T ss_pred HHHHHHHHH--hchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 355566655 456678889999988876542222111223468888888887777777777777777765431 1111
Q ss_pred HhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc
Q 003530 229 IGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNS 308 (813)
Q Consensus 229 i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 308 (813)
.. .-++..+-.++. ..+..+.+.|..+|..+.........-...-.++.++.+++++-- +-.+..++.++
T Consensus 690 ~~--e~vL~el~~Lis--esdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spll--qg~al~~~l~~---- 759 (1233)
T KOG1824|consen 690 LL--EAVLVELPPLIS--ESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLL--QGGALSALLLF---- 759 (1233)
T ss_pred HH--HHHHHHhhhhhh--HHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccc--cchHHHHHHHH----
Confidence 11 234555566666 567788899999999988777666655666789999999987632 22222222221
Q ss_pred hhHHHHHhh-----hHHHHHHHHhcCCHH-----HH----HHHHHHHHHhhC-Cc-ccHHHHHHcCChHHHHHHHhccCC
Q 003530 309 DVKVLVART-----VGSCLINIMKSGNMQ-----AR----EAALKALNQISS-CE-PSAKVLIHAGILPPLVKDLFTVGS 372 (813)
Q Consensus 309 ~~~~~i~~~-----gi~~Lv~lL~~~~~~-----~~----~~a~~aL~~Ls~-~~-~~~~~i~~~g~i~~Lv~lL~~~~~ 372 (813)
..+++.. +...|+.++..+-.+ +- ..-+.+...|+. .+ +++. ....|+.-+++.+
T Consensus 760 --f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s------~a~kl~~~~~s~~- 830 (1233)
T KOG1824|consen 760 --FQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKS------LATKLIQDLQSPK- 830 (1233)
T ss_pred --HHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchh------HHHHHHHHHhCCC-
Confidence 1112111 134556666543211 11 122333333333 22 2222 2344444444432
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHH
Q 003530 373 NHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVS 452 (813)
Q Consensus 373 ~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 452 (813)
.+..++.-|.-.|..+..+.+. ....+.-..+++-+++++.+++..|..+|.+++.++.. .
T Consensus 831 --s~~~ikvfa~LslGElgr~~~~------------s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~--~--- 891 (1233)
T KOG1824|consen 831 --SSDSIKVFALLSLGELGRRKDL------------SPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLP--K--- 891 (1233)
T ss_pred --CchhHHHHHHhhhhhhccCCCC------------CcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchH--h---
Confidence 2467777777777776654432 22345556788899999999999999999999886431 1
Q ss_pred HHHhcCCHHHHHHhhhCCCh--HHHHHHHH-HHHHhCCCCCHHHHHHHhcccccHHHHHHhh----hcCCCChHHHHHHH
Q 003530 453 AIKSSGATISLVQFVEAPQN--DLRLASIE-LIQNLSPHMGHELADALRGAVGQLGSLIRVI----SENVGISKEQAAAV 525 (813)
Q Consensus 453 ~i~~~g~i~~Lv~lL~~~~~--~v~~~A~~-~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll----~~~~~~~~~~~~a~ 525 (813)
-++.+.....+... .+..++.+ .+...+.. .+. ..++.++.+| .... +.+|...+
T Consensus 892 ------yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd-------~~~---~~v~~IW~lL~k~cE~~e--egtR~vvA 953 (1233)
T KOG1824|consen 892 ------YLPFILEQIESQPKRQYLLLHSLKEVIVSASVD-------GLK---PYVEKIWALLFKHCECAE--EGTRNVVA 953 (1233)
T ss_pred ------HHHHHHHHHhcchHhHHHHHHHHHHHHHHhccc-------hhh---hhHHHHHHHHHHhcccch--hhhHHHHH
Confidence 24555555544322 23333332 22222211 111 1233344333 3333 36788888
Q ss_pred HHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhhhccccccCCccchhhhHhHHHHHHHHhccCCCChHHHHHHHHcCchHH
Q 003530 526 GLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAAL 605 (813)
Q Consensus 526 ~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~~i~~ 605 (813)
-+|+.|...+++- .+|.|-..+.+.. +...-.++.+ .+|+-. .+|.-.+.... .-|.-
T Consensus 954 ECLGkL~l~epes--------LlpkL~~~~~S~a----------~~~rs~vvsa-vKfsis--d~p~~id~~lk-~~ig~ 1011 (1233)
T KOG1824|consen 954 ECLGKLVLIEPES--------LLPKLKLLLRSEA----------SNTRSSVVSA-VKFSIS--DQPQPIDPLLK-QQIGD 1011 (1233)
T ss_pred HHhhhHHhCChHH--------HHHHHHHHhcCCC----------cchhhhhhhe-eeeeec--CCCCccCHHHH-HHHHH
Confidence 8999998877654 4567766666511 1111111221 223322 34444443332 33456
Q ss_pred HHHHHhcCCchHHHHHHHHHHhhhccccccc
Q 003530 606 FIELLQSNGLDKVQMVSATALENLSLESKNL 636 (813)
Q Consensus 606 L~~lL~~~~~~~vk~~Aa~aL~~ls~~~~~l 636 (813)
+..+++++ +.+|++.|-.++-..+++.+.+
T Consensus 1012 fl~~~~dp-Dl~VrrvaLvv~nSaahNKpsl 1041 (1233)
T KOG1824|consen 1012 FLKLLRDP-DLEVRRVALVVLNSAAHNKPSL 1041 (1233)
T ss_pred HHHHHhCC-chhHHHHHHHHHHHHHccCHhH
Confidence 77889999 9999999999998888877664
No 77
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.42 E-value=1.6e-05 Score=83.10 Aligned_cols=271 Identities=13% Similarity=0.154 Sum_probs=181.3
Q ss_pred hhhcCCCHHHHHHHhccCcHHH--HHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhc
Q 003530 187 ILGQGDTVRTIVKFLSHELSRE--REEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLE 264 (813)
Q Consensus 187 ~i~~~g~i~~Lv~lL~~~~~~~--~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~ 264 (813)
.|...|++..|++++..++.+. |.+|+.+|-.+.. .++++.+++. | +..++.+.+. .+.++.....+.+|.++.
T Consensus 175 ~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~-~-~~~Il~lAK~-~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 175 AIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARI-G-LGVILNLAKE-REPVELARSVAGILEHMF 250 (832)
T ss_pred HhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhc-c-chhhhhhhhh-cCcHHHHHHHHHHHHHHh
Confidence 4556799999999999988766 8889998887654 4667777643 3 4444444443 577899999999999997
Q ss_pred cCC-ccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCC--chhHHHHHhhhH-HHHHHHHhcCCHHHHHHHHHH
Q 003530 265 KCE-NNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALN--SDVKVLVARTVG-SCLINIMKSGNMQAREAALKA 340 (813)
Q Consensus 265 ~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~gi-~~Lv~lL~~~~~~~~~~a~~a 340 (813)
++. +.+..++++|+++.++...+..++.+...++-+|+|++.. ...+..|.+.-+ .-|.-+-.+.++-.+.+|+-+
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClA 330 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLA 330 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHH
Confidence 754 5678899999999999999999999999999999999884 456666666543 444444455667778899999
Q ss_pred HHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHH
Q 003530 341 LNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLH 420 (813)
Q Consensus 341 L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~ 420 (813)
..-|+.+.+....+.+.|.+...-.++.+.. +. ..++...+.. .-....-++.|+-
T Consensus 331 V~vlat~KE~E~~VrkS~TlaLVEPlva~~D-----P~----------~FARD~hd~a---------QG~~~d~LqRLvP 386 (832)
T KOG3678|consen 331 VAVLATNKEVEREVRKSGTLALVEPLVASLD-----PG----------RFARDAHDYA---------QGRGPDDLQRLVP 386 (832)
T ss_pred HhhhhhhhhhhHHHhhccchhhhhhhhhccC-----cc----------hhhhhhhhhh---------ccCChHHHHHhhh
Confidence 9999998887777777776554434444331 11 1111111000 1122456788888
Q ss_pred hhcCCChHHHHHHHHHHHHcccC--CCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCC
Q 003530 421 LISNTGPTIECKLLQVLVGLTSS--PTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPH 488 (813)
Q Consensus 421 lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~ 488 (813)
+|.+..-+.+ ++.+++-.+.. ... +.-.+.+.+-|+|+.|-++..+++..--..|.++|..+-..
T Consensus 387 lLdS~R~EAq--~i~AF~l~~EAaIKs~-Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEE 453 (832)
T KOG3678|consen 387 LLDSNRLEAQ--CIGAFYLCAEAAIKSL-QGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEE 453 (832)
T ss_pred hhhcchhhhh--hhHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccc
Confidence 8875433333 44443322211 000 00112344558999999999877766566777888877643
No 78
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=0.00011 Score=73.46 Aligned_cols=288 Identities=18% Similarity=0.182 Sum_probs=182.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhh-cCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHHhhh
Q 003530 154 MIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILG-QGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIGSI 232 (813)
Q Consensus 154 ~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~ 232 (813)
.++.+|.+.++.++..|+..+..+... ..+.... +.-.++.+.+++....+ -+.|+.+|.|++.+...++.+...
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~ 82 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD 82 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence 478889999999999999988888654 2222211 23457888899887766 678899999999999999999864
Q ss_pred hchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHH-------cCChHHHHHHHccCCH--HHHHHHHHHHHH
Q 003530 233 NGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAE-------NGRLQPLLTQILEGPQ--ETKLSLAAFLGD 303 (813)
Q Consensus 233 ~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~-------~G~i~~Lv~lL~~~~~--~~~~~a~~~L~~ 303 (813)
.+..++..+. +.....-...+.+|.||+..+.....+.. .|.........+.+-. .--...+-++.+
T Consensus 83 --~~k~l~~~~~--~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 83 --LLKVLMDMLT--DPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred --HHHHHHHHhc--CcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 8888999887 44455677889999999998876554331 2333333344433311 223356778888
Q ss_pred hcCCchhHHHHHhhh---HHHHHHHHhcCCHHH-HHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhH
Q 003530 304 LALNSDVKVLVARTV---GSCLINIMKSGNMQA-REAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRL 379 (813)
Q Consensus 304 L~~~~~~~~~i~~~g---i~~Lv~lL~~~~~~~-~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~ 379 (813)
|+..+.+|..+.+.- .+.|+.+-. .+..+ +...++.|.|.|....+...++. -.+..|..+|.-
T Consensus 159 ls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~lLp~iLlP---------- 226 (353)
T KOG2973|consen 159 LSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEVLLD-ESINLLPAILLP---------- 226 (353)
T ss_pred HhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHHHhc-chHHHHHHHHhh----------
Confidence 888888887776643 233333323 33334 56788999999998888877776 344444444432
Q ss_pred HHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhc-----CCChHHHHHHHHHHHHcccCCCchHHHHHHH
Q 003530 380 KEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS-----NTGPTIECKLLQVLVGLTSSPTTVLSVVSAI 454 (813)
Q Consensus 380 ~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~-----~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i 454 (813)
|+... +... .+-..+|.=+++|- .++|.++...+.+|.-||....+ |..+
T Consensus 227 ----------lagpe-e~sE----------Edm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~G----Re~l 281 (353)
T KOG2973|consen 227 ----------LAGPE-ELSE----------EDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAG----REVL 281 (353)
T ss_pred ----------cCCcc-ccCH----------HHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHh----HHHH
Confidence 11111 0000 00011222224443 36899999999999999987553 4555
Q ss_pred HhcCCHHHHHHhhhC-CChHHHHHHHHHHHHhC
Q 003530 455 KSSGATISLVQFVEA-PQNDLRLASIELIQNLS 486 (813)
Q Consensus 455 ~~~g~i~~Lv~lL~~-~~~~v~~~A~~~L~~Ls 486 (813)
++.|+-+.+-.+=+. ++++++..+-.....|.
T Consensus 282 R~kgvYpilRElhk~e~ded~~~ace~vvq~Lv 314 (353)
T KOG2973|consen 282 RSKGVYPILRELHKWEEDEDIREACEQVVQMLV 314 (353)
T ss_pred HhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 655655554443333 34466666555555544
No 79
>PF05536 Neurochondrin: Neurochondrin
Probab=98.37 E-value=0.00038 Score=79.07 Aligned_cols=242 Identities=18% Similarity=0.174 Sum_probs=158.0
Q ss_pred hHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCc----cHHHHHHcCChHHHHHHHccC-------CHHHHHHHHHHHHH
Q 003530 235 AILILVGMTSSKSENLLTVEKAEKTLANLEKCEN----NVRQMAENGRLQPLLTQILEG-------PQETKLSLAAFLGD 303 (813)
Q Consensus 235 ~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~----~~~~i~~~G~i~~Lv~lL~~~-------~~~~~~~a~~~L~~ 303 (813)
.+..-+++|+ +.+.+-+-.+...+.++....+ .++.+.++=+.+.|-.+|+++ ....+..++.+|..
T Consensus 6 ~l~~c~~lL~--~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 6 SLEKCLSLLK--SADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred HHHHHHHHhc--cCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 4556677787 5554445555556666655433 245677886788888999883 46778889999999
Q ss_pred hcCCchhH--HHHHhhhHHHHHHHHhcCCH-HHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHH
Q 003530 304 LALNSDVK--VLVARTVGSCLINIMKSGNM-QAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLK 380 (813)
Q Consensus 304 L~~~~~~~--~~i~~~gi~~Lv~lL~~~~~-~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~ 380 (813)
++..++.. ..+... ||.|++.+.+.+. .+...|..+|..++.+++.++.+++.|+++.|.+.+.+. ...+
T Consensus 84 f~~~~~~a~~~~~~~~-IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~------~~~~ 156 (543)
T PF05536_consen 84 FCRDPELASSPQMVSR-IPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQ------SFQM 156 (543)
T ss_pred HcCChhhhcCHHHHHH-HHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhC------cchH
Confidence 99977643 223222 8999999988776 899999999999999999999999999999999999873 5779
Q ss_pred HHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCc--hHHHHHHHHhcC
Q 003530 381 EVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTT--VLSVVSAIKSSG 458 (813)
Q Consensus 381 ~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~--~~~~~~~i~~~g 458 (813)
+.|..+|.+++...... ... ++...+ ..+++.+-..+.......+-..+..|..+-..... .......-.-..
T Consensus 157 E~Al~lL~~Lls~~~~~-~~~--~~~~~l--~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~ 231 (543)
T PF05536_consen 157 EIALNLLLNLLSRLGQK-SWA--EDSQLL--HSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSD 231 (543)
T ss_pred HHHHHHHHHHHHhcchh-hhh--hhHHHH--HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHH
Confidence 99999999998754411 110 000011 23455555666655566667777777766544310 000000000011
Q ss_pred CHHHHHHhhhCCCh-HHHHHHHHHHHHhCCCCC
Q 003530 459 ATISLVQFVEAPQN-DLRLASIELIQNLSPHMG 490 (813)
Q Consensus 459 ~i~~Lv~lL~~~~~-~v~~~A~~~L~~Ls~~~~ 490 (813)
....|..+|.+.-. ..|..+..+..+|....+
T Consensus 232 l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G 264 (543)
T PF05536_consen 232 LRKGLRDILQSRLTPSQRDPALNLAASLLDLLG 264 (543)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 13345556666544 556667776666654333
No 80
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.37 E-value=2.5e-07 Score=91.28 Aligned_cols=48 Identities=23% Similarity=0.428 Sum_probs=40.3
Q ss_pred CCceecccccccCCCc--------eecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCC
Q 003530 30 YDAFVCPLTKQVMRDP--------VTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELR 83 (813)
Q Consensus 30 ~~~~~Cpi~~~~m~dp--------v~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~ 83 (813)
..+..||||++.+.+| ++.+|||+||+.||.+|+.. ..+||+|+..+.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~------~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE------KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc------CCCCCCCCCEee
Confidence 3468999999988764 56789999999999999975 479999998653
No 81
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.35 E-value=2.2e-07 Score=66.71 Aligned_cols=40 Identities=30% Similarity=0.756 Sum_probs=33.8
Q ss_pred ecccccccCC---CceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCC
Q 003530 34 VCPLTKQVMR---DPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQ 79 (813)
Q Consensus 34 ~Cpi~~~~m~---dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~ 79 (813)
.||||.+.|. .++.++|||.|.+.||.+|+.. ..+||+|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~------~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR------NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH------SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh------CCcCCccC
Confidence 5999999993 4566999999999999999987 46999985
No 82
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.31 E-value=0.0017 Score=72.06 Aligned_cols=262 Identities=13% Similarity=0.157 Sum_probs=158.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhCCc---ccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCC
Q 003530 320 SCLINIMKSGNMQAREAALKALNQISSCE---PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD 396 (813)
Q Consensus 320 ~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~---~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~ 396 (813)
...+..|++.++.++..|+..+..|+.-- ..-+.+...|.| |.+.|... .+++.-..+++|..+...-.-
T Consensus 802 stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgee-----ypEvLgsILgAikaI~nvigm 874 (1172)
T KOG0213|consen 802 STILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEE-----YPEVLGSILGAIKAIVNVIGM 874 (1172)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcc-----cHHHHHHHHHHHHHHHHhccc
Confidence 55667788899999999999999887632 222344455543 45556543 366666666666555442211
Q ss_pred CcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHH
Q 003530 397 FDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRL 476 (813)
Q Consensus 397 ~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 476 (813)
..- .--..+.+|.|.-+|++...+++++++..+..+|.........+.-++ .--.|+++|.+-+.++|+
T Consensus 875 ~km--------~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRR 943 (1172)
T KOG0213|consen 875 TKM--------TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRR 943 (1172)
T ss_pred ccc--------CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 100 011257899999999999999999999999999976432111222222 134688999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhh
Q 003530 477 ASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVK 556 (813)
Q Consensus 477 ~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~ 556 (813)
+|...+.++++..+.. ..+..|++-|+..+. ..|.+..-+|+-.+. -+|-+..|=.++.
T Consensus 944 aa~nTfG~IakaIGPq---------dVLatLlnnLkvqeR--q~RvcTtvaIaIVaE----------~c~pFtVLPalmn 1002 (1172)
T KOG0213|consen 944 AAVNTFGYIAKAIGPQ---------DVLATLLNNLKVQER--QNRVCTTVAIAIVAE----------TCGPFTVLPALMN 1002 (1172)
T ss_pred HHHhhhhHHHHhcCHH---------HHHHHHHhcchHHHH--Hhchhhhhhhhhhhh----------hcCchhhhHHHHh
Confidence 9999999998654333 344445555544433 333333333332222 1233344444555
Q ss_pred hhccccccCCccchhhhHhHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHHhcCCchHHHHHHHHHHhhhccc
Q 003530 557 SIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLE 632 (813)
Q Consensus 557 ~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~ls~~ 632 (813)
++... ...++.+.+.+++.+..- ......+-+ +.+.|+|-.-|.+. +..-+..|+.++.+++-+
T Consensus 1003 eYrtP-------e~nVQnGVLkalsf~Fey--igemskdYi--yav~PlleDAlmDr-D~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1003 EYRTP-------EANVQNGVLKALSFMFEY--IGEMSKDYI--YAVTPLLEDALMDR-DLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred hccCc-------hhHHHHhHHHHHHHHHHH--HHHHhhhHH--HHhhHHHHHhhccc-cHHHHHHHHHHHHHHhcC
Confidence 54322 345677777777766521 011111111 45678888777777 777788888888888754
No 83
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.31 E-value=1.7e-07 Score=70.05 Aligned_cols=58 Identities=19% Similarity=0.393 Sum_probs=32.2
Q ss_pred ceecccccccCCCcee-cCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCcccHhhHHHH
Q 003530 32 AFVCPLTKQVMRDPVT-LENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNPSIALRNTI 97 (813)
Q Consensus 32 ~~~Cpi~~~~m~dpv~-~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I 97 (813)
-+.|++|.++|++||. -.|.|.||+.||...+ | ..||+|..+-...++.-|+.|.++|
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~------~--~~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCI------G--SECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGT------T--TB-SSS--B-S-SS----HHHHHHH
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhc------C--CCCCCcCChHHHHHHHhhhhhhccC
Confidence 3789999999999996 7999999999997754 2 4599999887778899998888776
No 84
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.29 E-value=3.6e-07 Score=88.74 Aligned_cols=67 Identities=19% Similarity=0.341 Sum_probs=58.2
Q ss_pred ceecccccccCCCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCcccHhhHHHHHHHHHhh
Q 003530 32 AFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNPSIALRNTIEEWNARN 104 (813)
Q Consensus 32 ~~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~~~~~~ 104 (813)
-++|-||...++-|+.++||||||.-||..|+.. + ++||+|+...+..-+..+...+..+|.+....
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-----q-p~CP~Cr~~~~esrlr~~s~~~ei~es~~~~r 91 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-----Q-PFCPVCREDPCESRLRGSSGSREINESHARNR 91 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHHhcC-----C-CCCccccccHHhhhcccchhHHHHHHhhhhcc
Confidence 3799999999999999999999999999999964 3 89999999887777888877888888876543
No 85
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.27 E-value=0.00062 Score=73.41 Aligned_cols=328 Identities=17% Similarity=0.168 Sum_probs=210.2
Q ss_pred HHHHHhhcCCcccccccccCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccC--cHHH
Q 003530 131 YVQYFCQSSRSNKHVVHNSELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHE--LSRE 208 (813)
Q Consensus 131 ~l~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~ 208 (813)
.+-.+.++.+.-|..+.-....+.+..++-+++.+++..+.++++.+..+. +.-..+.+.+.--.+++.|..+ +..+
T Consensus 6 ~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~-~~l~~~~~l~id~~ii~SL~~~~~~~~E 84 (371)
T PF14664_consen 6 DLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDE-ESLQILLKLHIDIFIIRSLDRDNKNDVE 84 (371)
T ss_pred HHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCchhhHhhhcccCCChHH
Confidence 344445555555554444444555555555556999999999999888765 6677777777666667777654 4567
Q ss_pred HHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHcc
Q 003530 209 REEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILE 288 (813)
Q Consensus 209 ~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~ 288 (813)
|++|...++.+...+...+.+- .|.+..++.+.. +.+...+..+..+|..++..+ -..++++||+..|++.+.+
T Consensus 85 R~QALkliR~~l~~~~~~~~~~--~~vvralvaiae--~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d 158 (371)
T PF14664_consen 85 REQALKLIRAFLEIKKGPKEIP--RGVVRALVAIAE--HEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALID 158 (371)
T ss_pred HHHHHHHHHHHHHhcCCcccCC--HHHHHHHHHHHh--CCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHh
Confidence 9999999999987766555563 588999999999 778889999999999986432 2456789999999999998
Q ss_pred CCHHHHHHHHHHHHHhcCCchhHHHHHhh-hHHHHHHHHhcC-------CH--HHHHHHHHHHHHhhCC-cccHHHHHH-
Q 003530 289 GPQETKLSLAAFLGDLALNSDVKVLVART-VGSCLINIMKSG-------NM--QAREAALKALNQISSC-EPSAKVLIH- 356 (813)
Q Consensus 289 ~~~~~~~~a~~~L~~L~~~~~~~~~i~~~-gi~~Lv~lL~~~-------~~--~~~~~a~~aL~~Ls~~-~~~~~~i~~- 356 (813)
+..+..+..+.++-.+-..+..|..+... .+..++.-+.+. +. +....+..++..+-.+ +.---.-..
T Consensus 159 ~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~ 238 (371)
T PF14664_consen 159 GSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMND 238 (371)
T ss_pred ccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCC
Confidence 87778888899999998888888877764 344444433221 22 2344555555554332 221111111
Q ss_pred cCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCC-CCcccccCCCCccccchhhHHHHHHhh---cC--------
Q 003530 357 AGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGH-DFDSITVGPDNQTLVSEDIVHNLLHLI---SN-------- 424 (813)
Q Consensus 357 ~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~-~~~~~~~~~~~~~l~~~~~v~~Lv~lL---~~-------- 424 (813)
..++..|+..|... .+++++....+|..+-.-+. .|..-. ..+..+...+-+..--.+- ..
T Consensus 239 ~~~lksLv~~L~~p-----~~~ir~~Ildll~dllrik~p~w~~~~--~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~ 311 (371)
T PF14664_consen 239 FRGLKSLVDSLRLP-----NPEIRKAILDLLFDLLRIKPPSWTESF--LAGRRLTTYGRFQDTWNLSSGFAEAKSILPHR 311 (371)
T ss_pred chHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHCCCCCCcccch--hhcccccccccccchhhhcccccccccccCcc
Confidence 24788899999864 47899999999998876443 232210 0111111112110000010 00
Q ss_pred --CChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCC-ChHHHHHHHHHHHHh
Q 003530 425 --TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP-QNDLRLASIELIQNL 485 (813)
Q Consensus 425 --~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~~L~~L 485 (813)
..+.+..+- ..-....+.++|.++.|+++..+. ++.+...|.-+|..+
T Consensus 312 ~~~~~~l~~~y-------------~aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~el 362 (371)
T PF14664_consen 312 SSKRPNLVNHY-------------LALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGEL 362 (371)
T ss_pred ccccccHHHHH-------------HHHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 001111110 112344577889999999999998 678888888777654
No 86
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=5.7e-07 Score=88.54 Aligned_cols=54 Identities=22% Similarity=0.432 Sum_probs=46.6
Q ss_pred CCCCceecccccccCCCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCC
Q 003530 28 PIYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDL 87 (813)
Q Consensus 28 ~~~~~~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~~l 87 (813)
-++..+.|-+|.+-++||--+||||.||=+||.+|+.+ +.-||.|++.+.+..+
T Consensus 235 i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e------k~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE------KAECPLCREKFQPSKV 288 (293)
T ss_pred CCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc------ccCCCcccccCCCcce
Confidence 34456999999999999999999999999999999987 5779999988765443
No 87
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.0011 Score=73.46 Aligned_cols=254 Identities=16% Similarity=0.140 Sum_probs=165.6
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcC-chhHhHH
Q 003530 151 LIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKS-EALCEKI 229 (813)
Q Consensus 151 ~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~-~~~~~~i 229 (813)
.-+-++.+|+++-+-+|.+|+..|..+...-++ .+ ..++|.|+.-|.++|+.++..|+.++++|+.. +.+.-.+
T Consensus 145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe---Al--r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L 219 (877)
T KOG1059|consen 145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE---AL--RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL 219 (877)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH---hH--hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc
Confidence 345678888999999999999999988764333 22 24689999999999999999999999999964 4444333
Q ss_pred hhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccCC-HHHHHHHHHHHHHh--cC
Q 003530 230 GSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGP-QETKLSLAAFLGDL--AL 306 (813)
Q Consensus 230 ~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~-~~~~~~a~~~L~~L--~~ 306 (813)
-|.+.++|.+ +.|.=+.........+|+-.+.-.. ...+++|..++.+.. ..+...+..++-.- ..
T Consensus 220 ------AP~ffklltt-SsNNWmLIKiiKLF~aLtplEPRLg----KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 220 ------APLFYKLLVT-SSNNWVLIKLLKLFAALTPLEPRLG----KKLIEPITELMESTVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred ------cHHHHHHHhc-cCCCeehHHHHHHHhhccccCchhh----hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence 3667777765 5555566666777777764332211 236789999998763 23444444433322 22
Q ss_pred CchhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhC-CcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHH
Q 003530 307 NSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISS-CEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSAT 385 (813)
Q Consensus 307 ~~~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~ 385 (813)
.-.+..+-....+..|-.++.+.++.++.-++-|++.+.. ++...+. --..+++.|.+. ++.++-.|+.
T Consensus 289 g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~Dk-----D~SIRlrALd 358 (877)
T KOG1059|consen 289 GMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDK-----DESIRLRALD 358 (877)
T ss_pred CCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccC-----CchhHHHHHH
Confidence 1112223333346677777778888999999999999887 4432222 123456777654 5889999999
Q ss_pred HHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhc-CCChHHHHHHHHHHHHcccCCC
Q 003530 386 ILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS-NTGPTIECKLLQVLVGLTSSPT 445 (813)
Q Consensus 386 ~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~ 445 (813)
.|.-+..... + ..++..|+..+- ......+...+.-+..+|+.+.
T Consensus 359 Ll~gmVskkN-------------l--~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~sn 404 (877)
T KOG1059|consen 359 LLYGMVSKKN-------------L--MEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSN 404 (877)
T ss_pred HHHHHhhhhh-------------H--HHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhh
Confidence 9987765321 0 234566666554 3444677777777777776643
No 88
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.24 E-value=0.0029 Score=68.45 Aligned_cols=348 Identities=14% Similarity=0.111 Sum_probs=192.4
Q ss_pred CCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccCCHHHHH-----HHHHHHHHhcC-CchhHHHHHhhhHH
Q 003530 247 SENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKL-----SLAAFLGDLAL-NSDVKVLVARTVGS 320 (813)
Q Consensus 247 s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~-----~a~~~L~~L~~-~~~~~~~i~~~gi~ 320 (813)
..++-.+.+|++.|+.+-..+. |+. -.|++++..+. .++. ...++...+.. +.+.... -.|
T Consensus 201 n~~~isqYHalGlLyq~kr~dk----ma~----lklv~hf~~n~-smknq~a~V~lvr~~~~ll~~n~q~~~q----~rp 267 (898)
T COG5240 201 NGNPISQYHALGLLYQSKRTDK----MAQ----LKLVEHFRGNA-SMKNQLAGVLLVRATVELLKENSQALLQ----LRP 267 (898)
T ss_pred CCChHHHHHHHHHHHHHhcccH----HHH----HHHHHHhhccc-ccccchhheehHHHHHHHHHhChHHHHH----HHH
Confidence 4567788999999987644332 221 24455554442 1221 12222222221 1111111 136
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCccc
Q 003530 321 CLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSI 400 (813)
Q Consensus 321 ~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 400 (813)
.|-..|++.-+.+.-.+++++..++... .....++. .|..|-.+|.++ ....+-.|..+|..|+...+....
T Consensus 268 fL~~wls~k~emV~lE~Ar~v~~~~~~n-v~~~~~~~-~vs~L~~fL~s~-----rv~~rFsA~Riln~lam~~P~kv~- 339 (898)
T COG5240 268 FLNSWLSDKFEMVFLEAARAVCALSEEN-VGSQFVDQ-TVSSLRTFLKST-----RVVLRFSAMRILNQLAMKYPQKVS- 339 (898)
T ss_pred HHHHHhcCcchhhhHHHHHHHHHHHHhc-cCHHHHHH-HHHHHHHHHhcc-----hHHHHHHHHHHHHHHHhhCCceee-
Confidence 6666777766778888888888877632 12222222 566777777765 367888999999999987664322
Q ss_pred ccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHH
Q 003530 401 TVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIE 480 (813)
Q Consensus 401 ~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~ 480 (813)
-+-+.+-.|+.+.+..+-..|+.+|..-..+ +....+ +..+..++++-++..+.-+..
T Consensus 340 ------------vcN~evEsLIsd~Nr~IstyAITtLLKTGt~-----e~idrL-----v~~I~sfvhD~SD~FKiI~id 397 (898)
T COG5240 340 ------------VCNKEVESLISDENRTISTYAITTLLKTGTE-----ETIDRL-----VNLIPSFVHDMSDGFKIIAID 397 (898)
T ss_pred ------------ecChhHHHHhhcccccchHHHHHHHHHcCch-----hhHHHH-----HHHHHHHHHhhccCceEEeHH
Confidence 1122334556666666767777777654433 222222 344455555555555555555
Q ss_pred HHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhhhcc
Q 003530 481 LIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQL 560 (813)
Q Consensus 481 ~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~ 560 (813)
+++.|+-..+.... ..+.-|...|.+... -+.+..++-+|+......++.++ .+++.|+.++.+++
T Consensus 398 a~rsLsl~Fp~k~~-------s~l~FL~~~L~~eGg-~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDce- 463 (898)
T COG5240 398 ALRSLSLLFPSKKL-------SYLDFLGSSLLQEGG-LEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDCE- 463 (898)
T ss_pred HHHHHHhhCcHHHH-------HHHHHHHHHHHhccc-chHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhcc-
Confidence 55555533444422 234455655555554 36777777777666655555432 34566777777633
Q ss_pred ccccCCccchhhhHhHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHHhcCCchHHHHHHHHHHhhhccccccccCCC
Q 003530 561 GETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLP 640 (813)
Q Consensus 561 ~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~ls~~~~~l~~~~ 640 (813)
+-+-++.+|.-+.......+.--.-+ ..+..-+--. +..+|..|..||..++-+..+.
T Consensus 464 -----------y~~I~vrIL~iLG~EgP~a~~P~~yv------rhIyNR~iLE-N~ivRsaAv~aLskf~ln~~d~---- 521 (898)
T COG5240 464 -----------YHQITVRILGILGREGPRAKTPGKYV------RHIYNRLILE-NNIVRSAAVQALSKFALNISDV---- 521 (898)
T ss_pred -----------hhHHHHHHHHHhcccCCCCCCcchHH------HHHHHHHHHh-hhHHHHHHHHHHHHhccCcccc----
Confidence 33445555555553211111111111 1112222223 5678888888887665443211
Q ss_pred CCCCCCCCcccccccccCCCCCCCCcccccccCccccchhhhccchHHHHHhhccCchhHHHHHHHHHHhhh
Q 003530 641 ELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVI 712 (813)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gai~~Lv~lL~~~~~~v~~~A~~AL~~L~ 712 (813)
.+-......|-++|.+.|++||..|..+|.++-
T Consensus 522 ---------------------------------------~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 522 ---------------------------------------VSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred ---------------------------------------ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 011225567889999999999999999999885
No 89
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.21 E-value=8.4e-05 Score=77.80 Aligned_cols=279 Identities=14% Similarity=0.091 Sum_probs=184.2
Q ss_pred HHHHhh-hHHHHHHHHhcCCHHH--HHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHH
Q 003530 312 VLVART-VGSCLINIMKSGNMQA--REAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILA 388 (813)
Q Consensus 312 ~~i~~~-gi~~Lv~lL~~~~~~~--~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~ 388 (813)
..|... |+..|++|+..++.+. +..|++.|-.+.. .+|++.+++-| +..++.+-+.. .+.+..+..+++|.
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~----e~~e~aR~~~~il~ 247 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKER----EPVELARSVAGILE 247 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhc----CcHHHHHHHHHHHH
Confidence 345554 4899999999887654 7888888877544 57888888876 44444444432 35788899999999
Q ss_pred HHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhh
Q 003530 389 NVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVE 468 (813)
Q Consensus 389 nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~ 468 (813)
++-.++..... .++..|++..++--.+..+|.+.++|+.+|.|++-+.- ...++.|.+..+-+-|..+..
T Consensus 248 ~mFKHSeet~~--------~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~--~a~qrrmveKr~~EWLF~LA~ 317 (832)
T KOG3678|consen 248 HMFKHSEETCQ--------RLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGG--QAVQRRMVEKRAAEWLFPLAF 317 (832)
T ss_pred HHhhhhHHHHH--------HHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhch--hHHHHHHHHhhhhhhhhhhhc
Confidence 99887765433 57778888888888888899999999999999998754 356667888888888888888
Q ss_pred CCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcH
Q 003530 469 APQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAF 548 (813)
Q Consensus 469 ~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v 548 (813)
+.++-.|..||.+++.|+. ..++...++.+ |.+...-.++.+.++-...+.+.-. +.++ ..+-+
T Consensus 318 skDel~R~~AClAV~vlat--~KE~E~~VrkS-~TlaLVEPlva~~DP~~FARD~hd~-----aQG~--------~~d~L 381 (832)
T KOG3678|consen 318 SKDELLRLHACLAVAVLAT--NKEVEREVRKS-GTLALVEPLVASLDPGRFARDAHDY-----AQGR--------GPDDL 381 (832)
T ss_pred chHHHHHHHHHHHHhhhhh--hhhhhHHHhhc-cchhhhhhhhhccCcchhhhhhhhh-----hccC--------ChHHH
Confidence 8888889999999999884 34444556665 6555444444444431111111100 0000 11234
Q ss_pred HHHHHHhhhhccccccCCccchhhhHhHHHHHHHHhcc-CCCChHHHHHHHHcCchHHHHHHHhcCCchHHHHHHHHHHh
Q 003530 549 GLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFV-LSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALE 627 (813)
Q Consensus 549 ~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~-l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~ 627 (813)
+.|+.+|.+.. .-..++++..-++.. .-....-.+...+-|+|..|..+..++ +...-+.|..+|.
T Consensus 382 qRLvPlLdS~R------------~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALt 448 (832)
T KOG3678|consen 382 QRLVPLLDSNR------------LEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALT 448 (832)
T ss_pred HHhhhhhhcch------------hhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHH
Confidence 66777777521 122344444333210 000111234567789999999998877 7777777788887
Q ss_pred hhcccccc
Q 003530 628 NLSLESKN 635 (813)
Q Consensus 628 ~ls~~~~~ 635 (813)
-+.+..+.
T Consensus 449 viGEEVP~ 456 (832)
T KOG3678|consen 449 VIGEEVPY 456 (832)
T ss_pred HhccccCh
Confidence 77766544
No 90
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=0.00057 Score=68.81 Aligned_cols=293 Identities=16% Similarity=0.219 Sum_probs=191.0
Q ss_pred ccccCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHH--HHHhccCcHHHHHHHHHHHHHhhc-C
Q 003530 146 VHNSELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTI--VKFLSHELSREREEAVSLLYELSK-S 222 (813)
Q Consensus 146 i~~~g~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~L--v~lL~~~~~~~~~~a~~~L~~ls~-~ 222 (813)
+.++|..+.++..+..+|.++-..|...+..++... ..-+.|........+ ..+-...+.-.|.....++..+.. +
T Consensus 124 vvNaeilklildcIggeddeVAkAAiesikrialfp-aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiS 202 (524)
T KOG4413|consen 124 VVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFP-AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSIS 202 (524)
T ss_pred HhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcH-HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcC
Confidence 457888999999999999999999999999998764 555666666655443 223233344456666777777754 4
Q ss_pred chhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccC--CHHHHHHHHHH
Q 003530 223 EALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEG--PQETKLSLAAF 300 (813)
Q Consensus 223 ~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~--~~~~~~~a~~~ 300 (813)
++..... ++.|.+..|..=++. ..|.-+..++......|...+..+.-+.+.|.|+.+-..+... ++--+..+.-.
T Consensus 203 pesanec-kkSGLldlLeaElkG-teDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmg 280 (524)
T KOG4413|consen 203 PESANEC-KKSGLLDLLEAELKG-TEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMG 280 (524)
T ss_pred HHHHhHh-hhhhHHHHHHHHhcC-CcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHH
Confidence 4444444 456888888877772 4777788888998999988888888888999999888887643 34344434333
Q ss_pred HHHh----cCCchhHHHHHhh---hHHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHHcCC--hHHHHHHHhccC
Q 003530 301 LGDL----ALNSDVKVLVART---VGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGI--LPPLVKDLFTVG 371 (813)
Q Consensus 301 L~~L----~~~~~~~~~i~~~---gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~--i~~Lv~lL~~~~ 371 (813)
.+.+ +.-+-.-+.+.+. .+..-.++....++..++.|..+|+.|.++.+.++.+...|- ...++.-..+.+
T Consensus 281 fgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqn 360 (524)
T KOG4413|consen 281 FGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQN 360 (524)
T ss_pred HHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhccc
Confidence 3333 3322223334433 245556677778999999999999999999999988887764 333433333322
Q ss_pred CCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCC-ccc-----------cchhhHHHHHHhhcCCChHHHHHHHHHHHH
Q 003530 372 SNHLPMRLKEVSATILANVVNSGHDFDSITVGPDN-QTL-----------VSEDIVHNLLHLISNTGPTIECKLLQVLVG 439 (813)
Q Consensus 372 ~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~-~~l-----------~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~ 439 (813)
...-++.+..+|.+++..-.-+..-.+|... ..+ ..-.-...+...++.+.|+++..+.+++..
T Consensus 361 ----ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTA 436 (524)
T KOG4413|consen 361 ----AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTA 436 (524)
T ss_pred ----ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHH
Confidence 1234566777777776633222211111100 000 001223445566777889999999999999
Q ss_pred cccCCC
Q 003530 440 LTSSPT 445 (813)
Q Consensus 440 L~~~~~ 445 (813)
++..|=
T Consensus 437 iaaqPW 442 (524)
T KOG4413|consen 437 IAAQPW 442 (524)
T ss_pred HHcCcH
Confidence 998874
No 91
>PHA02926 zinc finger-like protein; Provisional
Probab=98.18 E-value=1.3e-06 Score=82.64 Aligned_cols=57 Identities=19% Similarity=0.376 Sum_probs=44.2
Q ss_pred CCCCCceecccccccCCC---------ceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCC
Q 003530 27 EPIYDAFVCPLTKQVMRD---------PVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELR 83 (813)
Q Consensus 27 ~~~~~~~~Cpi~~~~m~d---------pv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~ 83 (813)
....++..|+||.+...+ +++.+|||+||..||.+|.......|....||.|+..+.
T Consensus 165 ~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 165 YRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred HhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 344567999999998744 477899999999999999986322333478999998753
No 92
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.0011 Score=74.60 Aligned_cols=281 Identities=16% Similarity=0.181 Sum_probs=169.5
Q ss_pred hhccCCCCcccHHHHHHHHHHHhhcCCcccccccccCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCC
Q 003530 114 KSLNLGSSESDIMPALKYVQYFCQSSRSNKHVVHNSELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDT 193 (813)
Q Consensus 114 ~~l~~~~~~~~~~~al~~l~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~ 193 (813)
..|.+++ .-.+.-||..+-.++.. +..| ...|.+.++|+..++-+|.+|+.++.++-...++--+. .
T Consensus 114 nDL~s~n-q~vVglAL~alg~i~s~-Emar------dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f 180 (866)
T KOG1062|consen 114 NDLNSSN-QYVVGLALCALGNICSP-EMAR------DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----F 180 (866)
T ss_pred hhccCCC-eeehHHHHHHhhccCCH-HHhH------HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----h
Confidence 3454432 23344577777665542 2222 35677888899999999999999988886665543332 3
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhhcCc-hhHhHHhhhhchHHHHHHhcccC--C-----------CCHHHHHHHHHH
Q 003530 194 VRTIVKFLSHELSREREEAVSLLYELSKSE-ALCEKIGSINGAILILVGMTSSK--S-----------ENLLTVEKAEKT 259 (813)
Q Consensus 194 i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~--s-----------~~~~~~~~a~~~ 259 (813)
++..-++|.+.+..+...++..+..+++.. +.-.. ....++.||..|+.- + .+|-++...
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~---fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~i--- 254 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSY---FRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRI--- 254 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHH---HHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHH---
Confidence 666778888888777777777777776542 22111 122445555555420 0 122222222
Q ss_pred HHhhccCCccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhHHHHHhh----hHHHHHHHHhcCCHHHHH
Q 003530 260 LANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVART----VGSCLINIMKSGNMQARE 335 (813)
Q Consensus 260 L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~----gi~~Lv~lL~~~~~~~~~ 335 (813)
-.++.+|-.++.+..+.+..+|..++.+-+.-..++.. .|..+..+. .+..++.
T Consensus 255 --------------------LrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~--~~~~Lrv 312 (866)
T KOG1062|consen 255 --------------------LRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR--SNSGLRV 312 (866)
T ss_pred --------------------HHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc--CCchHHH
Confidence 24556677778888888888998888754322222222 123333322 4556777
Q ss_pred HHHHHHHHhhCCc-ccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhh
Q 003530 336 AALKALNQISSCE-PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDI 414 (813)
Q Consensus 336 ~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~ 414 (813)
.|+.+|+..-.++ .|.+.+ ++..|.+.++... ..++++
T Consensus 313 lainiLgkFL~n~d~NirYv----aLn~L~r~V~~d~-----~avqrH-------------------------------- 351 (866)
T KOG1062|consen 313 LAINILGKFLLNRDNNIRYV----ALNMLLRVVQQDP-----TAVQRH-------------------------------- 351 (866)
T ss_pred HHHHHHHHHhcCCccceeee----ehhhHHhhhcCCc-----HHHHHH--------------------------------
Confidence 7777776655543 222222 4444555554321 111111
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhC
Q 003530 415 VHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLS 486 (813)
Q Consensus 415 v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls 486 (813)
=..++++|+++++.+|..|...++.|..... ...| ++.|+.+|.+.+++.+...+.-+..++
T Consensus 352 r~tIleCL~DpD~SIkrralELs~~lvn~~N-----v~~m-----v~eLl~fL~~~d~~~k~~~as~I~~la 413 (866)
T KOG1062|consen 352 RSTILECLKDPDVSIKRRALELSYALVNESN-----VRVM-----VKELLEFLESSDEDFKADIASKIAELA 413 (866)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhcccc-----HHHH-----HHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 2356789999999999999999999998754 2333 678999999999998877776666665
No 93
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=0.00025 Score=80.96 Aligned_cols=388 Identities=15% Similarity=0.183 Sum_probs=232.4
Q ss_pred HHHHHHHHHHHHHhhccCcchhhhhh----cCCCHHHHHHHhc-cCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHH
Q 003530 164 RKVRCTALETLRIVVEEDDDNKEILG----QGDTVRTIVKFLS-HELSREREEAVSLLYELSKSEALCEKIGSINGAILI 238 (813)
Q Consensus 164 ~~~~~~al~~L~~L~~~~~~~~~~i~----~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~ 238 (813)
.+-..-++.+|.|+...+++-...+. --|-.+.+..+|. .+++.++.-|+.++..+....+....++ +.|.+..
T Consensus 1739 ~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a-~~~vL~~ 1817 (2235)
T KOG1789|consen 1739 ETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLA-TCNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHH-hhhHHHH
Confidence 34567789999999888775333222 2366777777775 5677889999999999999999999997 4689999
Q ss_pred HHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHcc-CCHHHHHHHHHHHHHhcCCch--hHHHH-
Q 003530 239 LVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILE-GPQETKLSLAAFLGDLALNSD--VKVLV- 314 (813)
Q Consensus 239 Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~--~~~~i- 314 (813)
|+.+|- .-|..++.+..+|+.|+++.+..+...+.|++..+..++.. .+...+..++..++.|..++- -|..|
T Consensus 1818 LL~lLH---S~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~IT 1894 (2235)
T KOG1789|consen 1818 LLTLLH---SQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTIT 1894 (2235)
T ss_pred HHHHHh---cChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeee
Confidence 999995 67889999999999999999988888889999999888764 467888889999999876431 11111
Q ss_pred -HhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccH--HHHH--HcCChHHHHHHHhccCCCCCChhHHHHHHHHHHH
Q 003530 315 -ARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSA--KVLI--HAGILPPLVKDLFTVGSNHLPMRLKEVSATILAN 389 (813)
Q Consensus 315 -~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~--~~i~--~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~n 389 (813)
...--..+++.+++ ++ ++++.++-.=+.+|+-. ..+. -.|.|..++.-+.....++ +.++ |+
T Consensus 1895 L~kFLP~~f~d~~RD-~P---EAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~--p~~~-------W~ 1961 (2235)
T KOG1789|consen 1895 LIKFLPEIFADSLRD-SP---EAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKD--PTVK-------WN 1961 (2235)
T ss_pred hHHhchHHHHHHHhc-CH---HHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccC--Cccc-------cc
Confidence 11101233444443 33 45555554433344210 0001 1233444433332221111 1100 11
Q ss_pred HHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhC
Q 003530 390 VVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEA 469 (813)
Q Consensus 390 L~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~ 469 (813)
+-.......++ ++ ...-.|++-. ..+..+.- .| .+|. .... +.++.+.+++..
T Consensus 1962 ~PEqsAg~~Ea----~~-E~aVGG~~~R--~Fi~~P~f-----------~L-R~Pk---~FL~-----~LLek~lelm~~ 2014 (2235)
T KOG1789|consen 1962 TPEQSAGTSEA----DK-ECAVGGSINR--EFVVGPGF-----------NL-RHPK---LFLT-----ELLEKVLELMSR 2014 (2235)
T ss_pred Cchhhcchhhh----cc-CcccchhhhH--HHhhCCCC-----------cc-cCHH---HHHH-----HHHHHHHHHhcC
Confidence 11100000000 00 0000111100 11111100 00 0011 1111 235566666666
Q ss_pred CChHH--HHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCc
Q 003530 470 PQNDL--RLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGA 547 (813)
Q Consensus 470 ~~~~v--~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~ 547 (813)
++++- ...-..++..|-+. ....++++..- |.+|.++..+...++ ..-..|..+|..|+. +.-..+++.....
T Consensus 2015 ~~peqh~l~lLt~A~V~L~r~-hP~LADqip~L-GylPK~~~Am~~~n~--s~P~SaiRVlH~Lse-n~~C~~AMA~l~~ 2089 (2235)
T KOG1789|consen 2015 PTPEQHELDLLTKAFVELVRH-HPNLADQLPSL-GYLPKFCTAMCLQNT--SAPRSAIRVLHELSE-NQFCCDAMAQLPC 2089 (2235)
T ss_pred CCcccchhHHHHHHHHHHHHh-CcchhhhCCCc-cchHHHHHHHHhcCC--cCcHHHHHHHHHHhh-ccHHHHHHhcccc
Confidence 65522 11112222223222 34456778877 999999999988876 555788899999988 6777899998888
Q ss_pred HHHHHHHhhhhccccccCCccchhhhHhHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHHhcC
Q 003530 548 FGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSN 613 (813)
Q Consensus 548 v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~~i~~L~~lL~~~ 613 (813)
+..++..+.. .....--|+.+|-++... ...+........|.+|.|..||...
T Consensus 2090 i~~~m~~mkK-----------~~~~~GLA~EalkR~~~r--~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2090 IDGIMKSMKK-----------QPSLMGLAAEALKRLMKR--NTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred chhhHHHHHh-----------cchHHHHHHHHHHHHHHH--hHHHHHHHHhccCcHHHHHHHhccc
Confidence 8888888875 123444677788877754 3445566677899999999999864
No 94
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.18 E-value=0.0027 Score=68.64 Aligned_cols=484 Identities=13% Similarity=0.060 Sum_probs=261.4
Q ss_pred cCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHH
Q 003530 203 HELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPL 282 (813)
Q Consensus 203 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~L 282 (813)
++|+..|..|=.-|.+++..+- ...+..|+..|-+...++..+..|.-+|.|-
T Consensus 16 spD~n~rl~aE~ql~~l~~~dF--------~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~------------------- 68 (858)
T COG5215 16 SPDPNARLRAEAQLLELQSGDF--------EQFISLLVQVLCDLNSNDQLRMVAGLILKNS------------------- 68 (858)
T ss_pred CCCCCccccHHHHHHHhccccH--------HHHHHHHHHHHhccCCcHHHHHHHHHHHhhh-------------------
Confidence 4455666666666667665432 1234456666654345666666666666552
Q ss_pred HHHHccCCHHHHHHHHHHHHHhcCCchhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHH
Q 003530 283 LTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPP 362 (813)
Q Consensus 283 v~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~ 362 (813)
|...+++.+..... .-+....+.|..+.... .+-|.++.+.....|++.+..++... +-.|.-|-
T Consensus 69 ---l~a~d~~~~~~~~q--rW~~~~~E~k~qvK~~a----l~aL~s~epr~~~~Aaql~aaIA~~E------lp~~~wp~ 133 (858)
T COG5215 69 ---LHANDPELQKGCSQ--RWLGMRHESKEQVKGMA----LRALKSPEPRFCTMAAQLLAAIARME------LPNSLWPG 133 (858)
T ss_pred ---hhcCCHHHHHHHHH--hhccCCHHHHHHHHHHH----HHHhcCCccHHHHHHHHHHHHHHHhh------CccccchH
Confidence 11122222221111 11123344554444332 34466778888889999999888732 11234455
Q ss_pred HHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhH-HHHHHhhc-CCChHHHHHHHHHHHHc
Q 003530 363 LVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIV-HNLLHLIS-NTGPTIECKLLQVLVGL 440 (813)
Q Consensus 363 Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v-~~Lv~lL~-~~~~~~~~~a~~~L~~L 440 (813)
|+..|....-...+..+|..++.++.+.|..... +.+ .-.+..++ .....-++ .++..+|-.++.+|.+=
T Consensus 134 lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P-e~l-------i~~sN~il~aiv~ga~k~et~~avRLaaL~aL~ds 205 (858)
T COG5215 134 LMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP-EDL-------IQMSNVILFAIVMGALKNETTSAVRLAALKALMDS 205 (858)
T ss_pred HHHHHHHhccccCchHhHHHHHHHHHHHhhccCH-HHH-------HHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHH
Confidence 5554443221234578899999999999875442 211 01111222 22233444 35678888899998762
Q ss_pred cc---CCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCC
Q 003530 441 TS---SPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGI 517 (813)
Q Consensus 441 ~~---~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~ 517 (813)
+. +....+..+.. .++...+.-..++.+++.+|..+|..+..- --.+.....+. -......+.++++++
T Consensus 206 l~fv~~nf~~E~erNy-----~mqvvceatq~~d~e~q~aafgCl~kim~L-yY~fm~~ymE~-aL~alt~~~mks~nd- 277 (858)
T COG5215 206 LMFVQGNFCYEEERNY-----FMQVVCEATQGNDEELQHAAFGCLNKIMML-YYKFMQSYMEN-ALAALTGRFMKSQND- 277 (858)
T ss_pred HHHHHHhhcchhhhch-----hheeeehhccCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHhcCcch-
Confidence 21 11111222222 244555666777889998888888766510 01111222221 123445677888875
Q ss_pred hHHHHHHHHHHhcCCC-----------------CCHHHHHHHHhcCcHHHHHHHhhhhccccccCCccchhhhHhHHHHH
Q 003530 518 SKEQAAAVGLLAELPE-----------------RDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVL 580 (813)
Q Consensus 518 ~~~~~~a~~~L~~L~~-----------------~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL 580 (813)
++...|+-.-+.+.. .+....+.- -++++|.|+++|.... + .....+...-..+...|
T Consensus 278 -~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aa-v~dvlP~lL~LL~~q~--e-d~~~DdWn~smaA~sCL 352 (858)
T COG5215 278 -EVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAA-VADVLPELLSLLEKQG--E-DYYGDDWNPSMAASSCL 352 (858)
T ss_pred -HHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHH-HHHHHHHHHHHHHhcC--C-CccccccchhhhHHHHH
Confidence 777766554433322 111111111 2357899999998621 1 11122344555566666
Q ss_pred HHHhccCCCChHHHHHHHHcCchHHHHHHHhcCCchHHHHHHHHHHhhhccccccccCCCCCCCCCCCcccccccccCCC
Q 003530 581 ARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPV 660 (813)
Q Consensus 581 ~~~~~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~ls~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 660 (813)
.-|+.. . -..+.+ .+...+-+-++++ +..-+..|+.+++.+-.....- |+
T Consensus 353 qlfaq~----~--gd~i~~-pVl~FvEqni~~~-~w~nreaavmAfGSvm~gp~~~-----------------~l----- 402 (858)
T COG5215 353 QLFAQL----K--GDKIMR-PVLGFVEQNIRSE-SWANREAAVMAFGSVMHGPCED-----------------CL----- 402 (858)
T ss_pred HHHHHH----h--hhHhHH-HHHHHHHHhccCc-hhhhHHHHHHHhhhhhcCccHH-----------------HH-----
Confidence 666621 1 111111 1222222345566 7888899999987654321100 11
Q ss_pred CCCCCcccccccCccccchhhhccchHHHHHhhccCchhHHHHHHHHHHhhhhcCcchhhHHHHHHhhcCcHHHHHHHh-
Q 003530 661 ITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLL- 739 (813)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~l~~~gai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~~~~~v~~L~~ll~- 739 (813)
.-+-..++|.+...+.++---|..-++++++.++.. ....|-.+|-+++.+....
T Consensus 403 ------------------T~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~------va~~i~p~~Hl~~~vsa~li 458 (858)
T COG5215 403 ------------------TKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH------VAMIISPCGHLVLEVSASLI 458 (858)
T ss_pred ------------------HhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH------HHHhcCccccccHHHHHHHh
Confidence 112345888899999988889999999999999842 2345555555554333221
Q ss_pred h-cCChHHHHHHHHHHHHHHcc--hhhhhhhcCCCcchHHHHHHhhh------cCchhHHHHHHHHHHhcccC
Q 003530 740 E-KRTENLQRRAVWVVERILRT--DDIAYEVSGDPNVSTALVDAFQH------ADYRTRQIAERALKHIDKIP 803 (813)
Q Consensus 740 ~-~~~~~~~~~a~~aL~~i~~~--~~~~~~~~~~~~~~~~Lv~~l~~------~~~~~~~~Aa~~L~~l~~~~ 803 (813)
+ ...+....+..|.+.++..+ +..+..-+........+++.|-+ .+.+.|..+=.+|..|-.+.
T Consensus 459 Gl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~ 531 (858)
T COG5215 459 GLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILIC 531 (858)
T ss_pred hhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhc
Confidence 1 14567778999999999877 22221222223334556665533 34577888888887776543
No 95
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1.3e-06 Score=79.56 Aligned_cols=51 Identities=22% Similarity=0.571 Sum_probs=43.1
Q ss_pred ceecccccccCCC--ceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCc
Q 003530 32 AFVCPLTKQVMRD--PVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLN 88 (813)
Q Consensus 32 ~~~Cpi~~~~m~d--pv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~~l~ 88 (813)
-|.||||++-++. ||.+.|||.||+.||+..++. ...||+|++.+..+++.
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~------~~~CP~C~kkIt~k~~~ 183 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN------TNKCPTCRKKITHKQFH 183 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHh------CCCCCCcccccchhhhe
Confidence 3999999999954 566899999999999999986 37899999887766553
No 96
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.16 E-value=0.0011 Score=71.85 Aligned_cols=280 Identities=22% Similarity=0.248 Sum_probs=183.3
Q ss_pred CChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHH
Q 003530 358 GILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVL 437 (813)
Q Consensus 358 g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L 437 (813)
..++.++.++.+. +..++..++..+..+ .....++.+..++.+.++.++..++.+|
T Consensus 43 ~~~~~~~~~l~~~-----~~~vr~~aa~~l~~~-------------------~~~~av~~l~~~l~d~~~~vr~~a~~aL 98 (335)
T COG1413 43 EAADELLKLLEDE-----DLLVRLSAAVALGEL-------------------GSEEAVPLLRELLSDEDPRVRDAAADAL 98 (335)
T ss_pred hhHHHHHHHHcCC-----CHHHHHHHHHHHhhh-------------------chHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3677888888764 478888888886543 2356799999999999999999999987
Q ss_pred HHcccCCCchHHHHHHHHhcCCHHHHHHhhh-CCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCC
Q 003530 438 VGLTSSPTTVLSVVSAIKSSGATISLVQFVE-APQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVG 516 (813)
Q Consensus 438 ~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~ 516 (813)
..+-.. ..++.|+.++. +.+..+|..+.++|..+-.. .++.+|+.++.+...
T Consensus 99 g~~~~~--------------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-------------~a~~~l~~~l~~~~~ 151 (335)
T COG1413 99 GELGDP--------------EAVPPLVELLENDENEGVRAAAARALGKLGDE-------------RALDPLLEALQDEDS 151 (335)
T ss_pred HccCCh--------------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-------------hhhHHHHHHhccchh
Confidence 766432 34788999999 57889999999999886531 357778888877662
Q ss_pred ----------ChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhhhccccccCCccchhhhHhHHHHHHHHhcc
Q 003530 517 ----------ISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFV 586 (813)
Q Consensus 517 ----------~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~ 586 (813)
...++..++..|+.+.. ...++.+...+.+ ....+...++.+|..+...
T Consensus 152 ~~a~~~~~~~~~~~r~~a~~~l~~~~~-----------~~~~~~l~~~l~~----------~~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 152 GSAAAALDAALLDVRAAAAEALGELGD-----------PEAIPLLIELLED----------EDADVRRAAASALGQLGSE 210 (335)
T ss_pred hhhhhhccchHHHHHHHHHHHHHHcCC-----------hhhhHHHHHHHhC----------chHHHHHHHHHHHHHhhcc
Confidence 11344445444444433 2344556666654 1235566666677666522
Q ss_pred CCCChHHHHHHHHcCchHHHHHHHhcCCchHHHHHHHHHHhhhccccccccCCCCCCCCCCCcccccccccCCCCCCCCc
Q 003530 587 LSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCR 666 (813)
Q Consensus 587 l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~ls~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (813)
+ ..+.+.|...+.+. +..++..++.+|+.+.
T Consensus 211 ---~---------~~~~~~l~~~~~~~-~~~vr~~~~~~l~~~~------------------------------------ 241 (335)
T COG1413 211 ---N---------VEAADLLVKALSDE-SLEVRKAALLALGEIG------------------------------------ 241 (335)
T ss_pred ---h---------hhHHHHHHHHhcCC-CHHHHHHHHHHhcccC------------------------------------
Confidence 1 23456677777777 7778877777775432
Q ss_pred ccccccCccccchhhhccchHHHHHhhccCchhHHHHHHHHHHhhhhcCcchhhHHHHHHhhcCcHHHHHHHhhcCChHH
Q 003530 667 LHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENL 746 (813)
Q Consensus 667 ~~~~~~~~~~~~~l~~~gai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~ 746 (813)
...++.+|+..+.+.+..++..+..++..+ + . ......+...+ .+.+..+
T Consensus 242 ---------------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~--~-~-----------~~~~~~l~~~~-~~~~~~~ 291 (335)
T COG1413 242 ---------------DEEAVDALAKALEDEDVILALLAAAALGAL--D-L-----------AEAALPLLLLL-IDEANAV 291 (335)
T ss_pred ---------------cchhHHHHHHHHhccchHHHHHHHHHhccc--C-c-----------hhhHHHHHHHh-hcchhhH
Confidence 123667788888888877777777666621 1 0 12234444555 3666777
Q ss_pred HHHHHHHHHHHHcchhhhhhhcCCCcchHHHHHHhhhcCchhHHHHHHHHHHh
Q 003530 747 QRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHI 799 (813)
Q Consensus 747 ~~~a~~aL~~i~~~~~~~~~~~~~~~~~~~Lv~~l~~~~~~~~~~Aa~~L~~l 799 (813)
+..+..++..+.. ......+.....+++..++..+...+..+
T Consensus 292 ~~~~~~~l~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 333 (335)
T COG1413 292 RLEAALALGQIGQ-----------EKAVAALLLALEDGDADVRKAALILLEGI 333 (335)
T ss_pred HHHHHHHHHhhcc-----------cchHHHHHHHhcCCchhhHHHHHHHHHhh
Confidence 7777777777742 12234677777788888777777766543
No 97
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=0.0017 Score=71.54 Aligned_cols=344 Identities=15% Similarity=0.159 Sum_probs=203.0
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHHc
Q 003530 278 RLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHA 357 (813)
Q Consensus 278 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~ 357 (813)
.++.++.-+..+++.+++.....|..+....+... .+.-.+.+.+++.+++..-+..++..++.+.... ....+.+.
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~--~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~-~i~~~~~~ 173 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS--GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGL-GIESLKEF 173 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC--HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc-HHhhhhhh
Confidence 35577778888888888887777766643222111 0111367778888777777888888888887643 23334556
Q ss_pred CChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhc---CCChHHHHHHH
Q 003530 358 GILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS---NTGPTIECKLL 434 (813)
Q Consensus 358 g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~---~~~~~~~~~a~ 434 (813)
+.+..|-+.+.+.. +...++.+.-+.-..+.+-.. ..+.+.++.|-.+|. +..+.+|+.+.
T Consensus 174 ~~l~~l~~ai~dk~----~~~~re~~~~a~~~~~~~Lg~------------~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~ 237 (569)
T KOG1242|consen 174 GFLDNLSKAIIDKK----SALNREAALLAFEAAQGNLGP------------PFEPYIVPILPSILTNFGDKINKVREAAV 237 (569)
T ss_pred hHHHHHHHHhcccc----hhhcHHHHHHHHHHHHHhcCC------------CCCchHHhhHHHHHHHhhccchhhhHHHH
Confidence 77777888777643 223333222222222222111 222455555555554 56778888877
Q ss_pred HHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcC
Q 003530 435 QVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISEN 514 (813)
Q Consensus 435 ~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~ 514 (813)
.+...+...-.. .-.+.+ +++++.=+....=+.+.+++.++..|+.+.+......+. ..+|.|...|.++
T Consensus 238 ~a~kai~~~~~~--~aVK~l-----lpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp---~iiP~lsevl~DT 307 (569)
T KOG1242|consen 238 EAAKAIMRCLSA--YAVKLL-----LPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLP---DLIPVLSEVLWDT 307 (569)
T ss_pred HHHHHHHHhcCc--chhhHh-----hhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHh---HhhHHHHHHHccC
Confidence 776655443211 111212 444444333333355688889999988765555433332 5899999999999
Q ss_pred CCChHHHHHHHHHHhcCCC--CCHHHHHHHHhcCcHHHHHHHhhhhccccccCCccchhhhHhHHHHHHHHhccCCCChH
Q 003530 515 VGISKEQAAAVGLLAELPE--RDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPD 592 (813)
Q Consensus 515 ~~~~~~~~~a~~~L~~L~~--~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~~ 592 (813)
.+ ++|.++-.+|-.+.. .|+++. -.+|.|++.+.+.. .....+...|..-++-.+-++.
T Consensus 308 ~~--evr~a~~~~l~~~~svidN~dI~------~~ip~Lld~l~dp~-----------~~~~e~~~~L~~ttFV~~V~~p 368 (569)
T KOG1242|consen 308 KP--EVRKAGIETLLKFGSVIDNPDIQ------KIIPTLLDALADPS-----------CYTPECLDSLGATTFVAEVDAP 368 (569)
T ss_pred CH--HHHHHHHHHHHHHHHhhccHHHH------HHHHHHHHHhcCcc-----------cchHHHHHhhcceeeeeeecch
Confidence 96 999999888877754 244432 23466777766521 1234455555555543222443
Q ss_pred HHHHHHHcCchHHHHHHHhcCCchHHHHHHHHHHhhhccccccccCCCCCCCCCCCcccccccccCCCCCCCCccccccc
Q 003530 593 AIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLC 672 (813)
Q Consensus 593 ~~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~ls~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (813)
.... ++|+|..-+... +..+++.++..+.|++.-..+-.... ..+
T Consensus 369 sLal-----mvpiL~R~l~eR-st~~kr~t~~IidNm~~LveDp~~la---------pfl-------------------- 413 (569)
T KOG1242|consen 369 SLAL-----MVPILKRGLAER-STSIKRKTAIIIDNMCKLVEDPKDLA---------PFL-------------------- 413 (569)
T ss_pred hHHH-----HHHHHHHHHhhc-cchhhhhHHHHHHHHHHhhcCHHHHh---------hhH--------------------
Confidence 3333 346776666666 77899999999999986543211100 000
Q ss_pred CccccchhhhccchHHHHHhhccCchhHHHHHHHHHHhhhhc
Q 003530 673 SLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDD 714 (813)
Q Consensus 673 ~~~~~~~l~~~gai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~ 714 (813)
..-+|.|=..+.+..++||..|+.||+.+..+
T Consensus 414 ----------~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 414 ----------PSLLPGLKENLDDAVPEVRAVAARALGALLER 445 (569)
T ss_pred ----------HHHhhHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 01233444455677899999999999888754
No 98
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.0055 Score=68.88 Aligned_cols=398 Identities=12% Similarity=0.151 Sum_probs=235.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHh-hccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHHh
Q 003530 152 IPMIIDMLKSSSRKVRCTALETLRIV-VEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIG 230 (813)
Q Consensus 152 i~~Lv~lL~s~~~~~~~~al~~L~~L-~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~ 230 (813)
-..|.++|.+.....+..|...+..+ +.+. + -....|..|+...+.+.++++-.--.|..-+.....-..
T Consensus 37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~-d------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL-- 107 (968)
T KOG1060|consen 37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGK-D------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL-- 107 (968)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHHHhcCC-c------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee--
Confidence 35688999888777888887766554 4443 2 234578899999999999987665555555543322211
Q ss_pred hhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHH-----HHHccCCHHHHHHHHHHHHHhc
Q 003530 231 SINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLL-----TQILEGPQETKLSLAAFLGDLA 305 (813)
Q Consensus 231 ~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv-----~lL~~~~~~~~~~a~~~L~~L~ 305 (813)
=.|..+-+-|+ +.|+.++..|+.+|..+- . ..|-|++ +...+.++.+|..|+.+|-.|-
T Consensus 108 ---LSIntfQk~L~--DpN~LiRasALRvlSsIR------v-----p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLY 171 (968)
T KOG1060|consen 108 ---LSINTFQKALK--DPNQLIRASALRVLSSIR------V-----PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLY 171 (968)
T ss_pred ---eeHHHHHhhhc--CCcHHHHHHHHHHHHhcc------h-----hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHh
Confidence 23566777788 789999998888886641 1 1222222 3345568899999999999997
Q ss_pred C-CchhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHH
Q 003530 306 L-NSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSA 384 (813)
Q Consensus 306 ~-~~~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~ 384 (813)
. +++.+..+. ..+=.+|.+.++.+.-.|+.|.-.+|-+. -+. + .+-...|.++|.... .=.+....
T Consensus 172 sLd~e~k~qL~----e~I~~LLaD~splVvgsAv~AF~evCPer--ldL-I-HknyrklC~ll~dvd-----eWgQvvlI 238 (968)
T KOG1060|consen 172 SLDPEQKDQLE----EVIKKLLADRSPLVVGSAVMAFEEVCPER--LDL-I-HKNYRKLCRLLPDVD-----EWGQVVLI 238 (968)
T ss_pred cCChhhHHHHH----HHHHHHhcCCCCcchhHHHHHHHHhchhH--HHH-h-hHHHHHHHhhccchh-----hhhHHHHH
Confidence 6 555555443 23345677788888888888887776431 111 1 122455566665431 23344455
Q ss_pred HHHHHHHhcCCCCccc---ccCCCC---------ccc----cchhhHHHHH----HhhcCCChHHHHHHHHHHHHcccCC
Q 003530 385 TILANVVNSGHDFDSI---TVGPDN---------QTL----VSEDIVHNLL----HLISNTGPTIECKLLQVLVGLTSSP 444 (813)
Q Consensus 385 ~~L~nL~~~~~~~~~~---~~~~~~---------~~l----~~~~~v~~Lv----~lL~~~~~~~~~~a~~~L~~L~~~~ 444 (813)
..|..-|++.-..... ....++ ..+ ...--+..|+ -||++.++.+--.++.+++.++...
T Consensus 239 ~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~ 318 (968)
T KOG1060|consen 239 NMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN 318 (968)
T ss_pred HHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH
Confidence 5555555533222110 000000 000 1111122333 3667788889899999999998753
Q ss_pred CchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHH
Q 003530 445 TTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAA 524 (813)
Q Consensus 445 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a 524 (813)
. ...| +.+|+.+|++ +.++|.-.+..+..++...+.-+...+... ++.+.++ ..++.-=
T Consensus 319 ~-----~~~i-----~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~P~lKsF---------fv~ssDp-~~vk~lK 377 (968)
T KOG1060|consen 319 Q-----VTKI-----AKALVRLLRS-NREVQYVVLQNIATISIKRPTLFEPHLKSF---------FVRSSDP-TQVKILK 377 (968)
T ss_pred H-----HHHH-----HHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhhhhhhce---------EeecCCH-HHHHHHH
Confidence 2 1222 7789998875 456666666666666643333322222221 2334443 4666666
Q ss_pred HHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhhhccccccCCccchhhhHhHHHHHHHHhccCCCChHHHHHHHHcCchH
Q 003530 525 VGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAA 604 (813)
Q Consensus 525 ~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~~i~ 604 (813)
..+|++|.. ...+... ++.+...+.+ .+..+...++.+|.+++.. .-.+.. ..+.
T Consensus 378 leiLs~La~-esni~~I------LrE~q~YI~s----------~d~~faa~aV~AiGrCA~~---~~sv~~-----tCL~ 432 (968)
T KOG1060|consen 378 LEILSNLAN-ESNISEI------LRELQTYIKS----------SDRSFAAAAVKAIGRCASR---IGSVTD-----TCLN 432 (968)
T ss_pred HHHHHHHhh-hccHHHH------HHHHHHHHhc----------CchhHHHHHHHHHHHHHHh---hCchhh-----HHHH
Confidence 778888775 2222222 2334445444 1235777889999999853 222222 2345
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhhhccccc
Q 003530 605 LFIELLQSNGLDKVQMVSATALENLSLESK 634 (813)
Q Consensus 605 ~L~~lL~~~~~~~vk~~Aa~aL~~ls~~~~ 634 (813)
-|+.+++++ ++.|-..|+..+..|-+..+
T Consensus 433 gLv~Llssh-de~Vv~eaV~vIk~Llq~~p 461 (968)
T KOG1060|consen 433 GLVQLLSSH-DELVVAEAVVVIKRLLQKDP 461 (968)
T ss_pred HHHHHHhcc-cchhHHHHHHHHHHHHhhCh
Confidence 678888988 88888888888877766543
No 99
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.00011 Score=79.04 Aligned_cols=333 Identities=16% Similarity=0.121 Sum_probs=208.1
Q ss_pred cCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCC--
Q 003530 190 QGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCE-- 267 (813)
Q Consensus 190 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~-- 267 (813)
-.+.+++.+..+++.+..+|..|+..|+|+++-........ .+.....|-++.. +.+..++ .++..|-.|-++-
T Consensus 82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~-Fn~iFdvL~klsa--Dsd~~V~-~~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVY-FNEIFDVLCKLSA--DSDQNVR-GGAELLDRLIKDIVT 157 (675)
T ss_pred HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccc-hHHHHHHHHHHhc--CCccccc-cHHHHHHHHHHHhcc
Confidence 35678999999999999999999999999987544332222 2345556666665 3444433 3444444432110
Q ss_pred ccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhHHHHHhh--hHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 003530 268 NNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVART--VGSCLINIMKSGNMQAREAALKALNQIS 345 (813)
Q Consensus 268 ~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~--gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls 345 (813)
+....+-=.+.||.|-+.+...++.+|...+.-|..|-..++.. .+.-. -.+-|..+|++.+++++..+-.+|.++-
T Consensus 158 e~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~-m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL 236 (675)
T KOG0212|consen 158 ESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLE-MISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFL 236 (675)
T ss_pred ccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHH-HHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 00001111245555666666668888988888888776554432 22221 2588899999999999877777666654
Q ss_pred CCcccHHHHHH-cCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcC
Q 003530 346 SCEPSAKVLIH-AGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISN 424 (813)
Q Consensus 346 ~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~ 424 (813)
..-.+....++ ...++.++.-+.+. .+.++..|..-+..+....+... ...-.|++..++.++.+
T Consensus 237 ~eI~s~P~s~d~~~~i~vlv~~l~ss-----~~~iq~~al~Wi~efV~i~g~~~---------l~~~s~il~~iLpc~s~ 302 (675)
T KOG0212|consen 237 AEIRSSPSSMDYDDMINVLVPHLQSS-----EPEIQLKALTWIQEFVKIPGRDL---------LLYLSGILTAILPCLSD 302 (675)
T ss_pred HHHhcCccccCcccchhhccccccCC-----cHHHHHHHHHHHHHHhcCCCcch---------hhhhhhhhhhcccCCCC
Confidence 32112222112 33677777777654 48889888877777666544221 34446778888888887
Q ss_pred CChH-HHHHHHH---HHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcc
Q 003530 425 TGPT-IECKLLQ---VLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGA 500 (813)
Q Consensus 425 ~~~~-~~~~a~~---~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~ 500 (813)
..+. +++.+.. -|..++......++ +.=...+..|...+.++..+.|..+..-+..|-...+.++..+..
T Consensus 303 ~e~~~i~~~a~~~n~~l~~l~s~~~~~~~----id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~-- 376 (675)
T KOG0212|consen 303 TEEMSIKEYAQMVNGLLLKLVSSERLKEE----IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHND-- 376 (675)
T ss_pred CccccHHHHHHHHHHHHHHHHhhhhhccc----cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhcc--
Confidence 6663 5544332 34455544322111 111123677888999999999999997777666555555443333
Q ss_pred cccHHHHHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhh
Q 003530 501 VGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKS 557 (813)
Q Consensus 501 ~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~ 557 (813)
.....|.+-|.+.++ ++...+..++++++...... +.++.+.++|.-
T Consensus 377 -~if~tLL~tLsd~sd--~vvl~~L~lla~i~~s~~~~-------~~~~fl~sLL~~ 423 (675)
T KOG0212|consen 377 -SIFLTLLKTLSDRSD--EVVLLALSLLASICSSSNSP-------NLRKFLLSLLEM 423 (675)
T ss_pred -HHHHHHHHhhcCchh--HHHHHHHHHHHHHhcCcccc-------cHHHHHHHHHHH
Confidence 467788888888885 99999999999998744322 446667777665
No 100
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.09 E-value=3.4e-06 Score=60.96 Aligned_cols=43 Identities=40% Similarity=0.894 Sum_probs=37.3
Q ss_pred ecccccccCCCceecC-CCchhcHHHHHHHHHHhhhCCCCCCCCCCCcC
Q 003530 34 VCPLTKQVMRDPVTLE-NGQTFEREAIEKWFKECRENGRKPVCPLTQKE 81 (813)
Q Consensus 34 ~Cpi~~~~m~dpv~~~-~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~ 81 (813)
.||||.+.+.+|+.++ |||.|++.|+.+|+.. +. ..||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~----~~-~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKS----GK-NTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHh----Cc-CCCCCCCCc
Confidence 4999999998998866 9999999999999985 43 789999764
No 101
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.09 E-value=5.2e-05 Score=66.28 Aligned_cols=131 Identities=16% Similarity=0.103 Sum_probs=112.5
Q ss_pred chHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhHHH
Q 003530 234 GAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVL 313 (813)
Q Consensus 234 g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~ 313 (813)
+-+..||.=..+ ..+.+.++....-|.|.+.++-|-..+.+..+++.++.-|...++.+.+.+...|.|+|.+..++..
T Consensus 16 ~Ylq~LV~efq~-tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 16 EYLQHLVDEFQT-TTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHH-hccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence 456777777664 6789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhh-hHHHHHHHHhcCCHHHHHHHHHHHHHhhCCc-ccHHHHHHcCChHHHHHHHhc
Q 003530 314 VART-VGSCLINIMKSGNMQAREAALKALNQISSCE-PSAKVLIHAGILPPLVKDLFT 369 (813)
Q Consensus 314 i~~~-gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~ 369 (813)
|.+. |+|.++..++++.+.....++.+|..|+... ..+..+.. |..++.+..
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~----p~Vv~~v~r 148 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS----PAVVRTVQR 148 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc----HHHHHHHHH
Confidence 9987 5899999999999999999999999999853 45555433 455555543
No 102
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=3.4e-06 Score=97.29 Aligned_cols=75 Identities=25% Similarity=0.461 Sum_probs=69.0
Q ss_pred ccCCCCCceecccccccCCCceecC-CCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCcccHhhHHHHHHHHHh
Q 003530 25 HIEPIYDAFVCPLTKQVMRDPVTLE-NGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNPSIALRNTIEEWNAR 103 (813)
Q Consensus 25 ~~~~~~~~~~Cpi~~~~m~dpv~~~-~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~~~~~ 103 (813)
+..++|++|..|++.-+|+|||++| +|++.||+.|+.++-. ..+.|+||++|....++||..+|..|+.|..+
T Consensus 863 ~l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs------~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~e 936 (943)
T KOG2042|consen 863 ELGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS------DCTDPFNREPLTEDMVSPNEELKAKIRCWIKE 936 (943)
T ss_pred HhccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc------CCCCccccccCchhhcCCCHHHHHHHHHHHHH
Confidence 3677999999999999999999998 8999999999999985 47899999999999999999999999999876
Q ss_pred hh
Q 003530 104 NE 105 (813)
Q Consensus 104 ~~ 105 (813)
..
T Consensus 937 k~ 938 (943)
T KOG2042|consen 937 KR 938 (943)
T ss_pred hh
Confidence 54
No 103
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.0018 Score=71.90 Aligned_cols=211 Identities=14% Similarity=0.152 Sum_probs=148.0
Q ss_pred HHHHhcccCCCCHHHHHHHHHHHHhhc-cCCccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcC-CchhHHHHH
Q 003530 238 ILVGMTSSKSENLLTVEKAEKTLANLE-KCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVA 315 (813)
Q Consensus 238 ~Lv~lL~~~s~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~ 315 (813)
-++.||+ +..+-++..|+.+|+.+. .+++..+ ..+|.|++-|.++|+.++..|+.++..|+. ++.+.-.+
T Consensus 148 Dv~tLL~--sskpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L- 219 (877)
T KOG1059|consen 148 DVFTLLN--SSKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL- 219 (877)
T ss_pred HHHHHHh--cCchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-
Confidence 4677888 888999999999999885 3443322 478999999999999999999999999998 56553322
Q ss_pred hhhHHHHHHHHh-cCCHHHHHHHHHHHHHhhC-CcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHH--H
Q 003530 316 RTVGSCLINIMK-SGNMQAREAALKALNQISS-CEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANV--V 391 (813)
Q Consensus 316 ~~gi~~Lv~lL~-~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL--~ 391 (813)
-|.+.++|. +.|-.+...-+....+|+- .|.-.+. .+++|.+++.+.. -..+.-.|..+.... .
T Consensus 220 ---AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~----AmSLlYECvNTVVa~s~s 287 (877)
T KOG1059|consen 220 ---APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTV----AMSLLYECVNTVVAVSMS 287 (877)
T ss_pred ---cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhH----HHHHHHHHHHHheeehhc
Confidence 277788774 4566666677777777776 3443333 6899999998743 234444444433221 1
Q ss_pred hcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCC
Q 003530 392 NSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQ 471 (813)
Q Consensus 392 ~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~ 471 (813)
...++. .-...-++..|-.++.+.++.++.-.+-++..+..-+. ..+.+ --+.++..|.+.+
T Consensus 288 ~g~~d~----------~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp---~~Vqa-----~kdlIlrcL~DkD 349 (877)
T KOG1059|consen 288 SGMSDH----------SASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHP---KAVQA-----HKDLILRCLDDKD 349 (877)
T ss_pred cCCCCc----------HHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCH---HHHHH-----hHHHHHHHhccCC
Confidence 111111 11223467777778888999999999999999987643 11111 1456789999999
Q ss_pred hHHHHHHHHHHHHhC
Q 003530 472 NDLRLASIELIQNLS 486 (813)
Q Consensus 472 ~~v~~~A~~~L~~Ls 486 (813)
+.+|..|+-+|..+.
T Consensus 350 ~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 350 ESIRLRALDLLYGMV 364 (877)
T ss_pred chhHHHHHHHHHHHh
Confidence 999999999998877
No 104
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.0056 Score=61.86 Aligned_cols=277 Identities=18% Similarity=0.156 Sum_probs=177.3
Q ss_pred hHHHHHHhcccCCCCHHHHHHHHHHHHhhc-cCCcc----HHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCch
Q 003530 235 AILILVGMTSSKSENLLTVEKAEKTLANLE-KCENN----VRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSD 309 (813)
Q Consensus 235 ~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~-~~~~~----~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~ 309 (813)
..|-|-.=|. .++..++..++..+..+- ..+.| ...++.+|..+.++..+-..+.++...+...|..++..++
T Consensus 83 lmpdLQrGLi--addasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpa 160 (524)
T KOG4413|consen 83 LMPDLQRGLI--ADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPA 160 (524)
T ss_pred hhHHHHhccc--CCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHH
Confidence 3344433344 456667777777665553 33333 2345588999999999999999999999999999999888
Q ss_pred hHHHHHhhh-H--HHHHHHHhcCCHHHHHHHHHHHHHhhC-CcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHH
Q 003530 310 VKVLVARTV-G--SCLINIMKSGNMQAREAALKALNQISS-CEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSAT 385 (813)
Q Consensus 310 ~~~~i~~~g-i--~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~ 385 (813)
.-..+.+.. . -.+..+-...+.-++......+..+.+ +++.....-..|.+..|..-|+... +.-+...+..
T Consensus 161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGte----DtLVianciE 236 (524)
T KOG4413|consen 161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTE----DTLVIANCIE 236 (524)
T ss_pred HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCc----ceeehhhHHH
Confidence 877777764 2 234444444566667777788888877 6777777788999999988887632 4667788888
Q ss_pred HHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcC--CChHHHHHHHHHHHHcccCCCch----HHHHHHHHhcCC
Q 003530 386 ILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISN--TGPTIECKLLQVLVGLTSSPTTV----LSVVSAIKSSGA 459 (813)
Q Consensus 386 ~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~--~~~~~~~~a~~~L~~L~~~~~~~----~~~~~~i~~~g~ 459 (813)
....|+....+++ .+.++|.|..+..++.. .+|--+-.+......+-...... +...+... -.
T Consensus 237 lvteLaeteHgre---------flaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaiceali--ia 305 (524)
T KOG4413|consen 237 LVTELAETEHGRE---------FLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALI--IA 305 (524)
T ss_pred HHHHHHHHhhhhh---------hcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHH--HH
Confidence 8888887665544 47778999999888873 34444443444443333321100 11111111 23
Q ss_pred HHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccc--cHHH-HHHhhhcCCCChHHHHHHHHHHhcCCC
Q 003530 460 TISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVG--QLGS-LIRVISENVGISKEQAAAVGLLAELPE 533 (813)
Q Consensus 460 i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g--~i~~-Lv~ll~~~~~~~~~~~~a~~~L~~L~~ 533 (813)
+..-.++.++.+++.+..|.-++..|..+.... +.+..+ | ..+. |.+....+.+ .-+..+..+|.+++.
T Consensus 306 idgsfEmiEmnDpdaieaAiDalGilGSnteGa--dlllkT-gppaaehllarafdqnah--akqeaaihaLaaIag 377 (524)
T KOG4413|consen 306 IDGSFEMIEMNDPDAIEAAIDALGILGSNTEGA--DLLLKT-GPPAAEHLLARAFDQNAH--AKQEAAIHALAAIAG 377 (524)
T ss_pred HHhhHHhhhcCCchHHHHHHHHHHhccCCcchh--HHHhcc-CChHHHHHHHHHhccccc--chHHHHHHHHHHhhc
Confidence 455567888899999999999999887543222 333333 2 2233 3344444443 445556666655543
No 105
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.04 E-value=0.0022 Score=69.43 Aligned_cols=249 Identities=22% Similarity=0.267 Sum_probs=169.5
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHH
Q 003530 150 ELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKI 229 (813)
Q Consensus 150 g~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i 229 (813)
..++.+++.+.+.+..++..|...++.+.. .-+++.+..+|.+.++.+|..|+.+|..+
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~---------- 101 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGEL---------- 101 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHcc----------
Confidence 468889999998899999999988665532 34799999999999999999999988776
Q ss_pred hhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccCCHH------------HHHHH
Q 003530 230 GSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQE------------TKLSL 297 (813)
Q Consensus 230 ~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~------------~~~~a 297 (813)
..+.+++.|+.++.. +.+..++..++.+|..+- ....+.+++..+.+.... ++..+
T Consensus 102 -~~~~a~~~li~~l~~-d~~~~vR~~aa~aL~~~~----------~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 102 -GDPEAVPPLVELLEN-DENEGVRAAAARALGKLG----------DERALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred -CChhHHHHHHHHHHc-CCcHhHHHHHHHHHHhcC----------chhhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 245789999999984 588899999999997763 223488888888876532 33334
Q ss_pred HHHHHHhcCCchhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCCh
Q 003530 298 AAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPM 377 (813)
Q Consensus 298 ~~~L~~L~~~~~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~ 377 (813)
...|..+.. ...++.+..++.+.+..++..++.+|..+.... ..+.+.+...+... ..
T Consensus 170 ~~~l~~~~~---------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~-----~~ 227 (335)
T COG1413 170 AEALGELGD---------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDE-----SL 227 (335)
T ss_pred HHHHHHcCC---------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCC-----CH
Confidence 444433321 113578888888888888899999888877754 23445566666543 46
Q ss_pred hHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhc
Q 003530 378 RLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSS 457 (813)
Q Consensus 378 ~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~ 457 (813)
.++..++..|..+- ....+..++..+.+.+..++..+...+... .. .
T Consensus 228 ~vr~~~~~~l~~~~-------------------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~--~~------------~ 274 (335)
T COG1413 228 EVRKAALLALGEIG-------------------DEEAVDALAKALEDEDVILALLAAAALGAL--DL------------A 274 (335)
T ss_pred HHHHHHHHHhcccC-------------------cchhHHHHHHHHhccchHHHHHHHHHhccc--Cc------------h
Confidence 77777776664321 134577777777777766665554444311 00 1
Q ss_pred CCHHHHHHhhhCCChHHHHHHHHHHHHhC
Q 003530 458 GATISLVQFVEAPQNDLRLASIELIQNLS 486 (813)
Q Consensus 458 g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls 486 (813)
.....+...+.+....++..+...+....
T Consensus 275 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 275 EAALPLLLLLIDEANAVRLEAALALGQIG 303 (335)
T ss_pred hhHHHHHHHhhcchhhHHHHHHHHHHhhc
Confidence 12445555666666666666666665544
No 106
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.01 E-value=5.8e-05 Score=66.00 Aligned_cols=113 Identities=18% Similarity=0.092 Sum_probs=96.3
Q ss_pred CChHHHHHHHcc-CCHHHHHHHHHHHHHhcCCchhHHHHHhhh-HHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHH
Q 003530 277 GRLQPLLTQILE-GPQETKLSLAAFLGDLALNSDVKVLVARTV-GSCLINIMKSGNMQAREAALKALNQISSCEPSAKVL 354 (813)
Q Consensus 277 G~i~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g-i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i 354 (813)
+.+..||.-... .+.+.++....-|.|++.++.|-..+.+.. +..++.-|...++.+++.+.+.|.|+|..+.|++.|
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I 95 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFI 95 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHH
Confidence 456666655543 488999999999999999999998888875 688999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q 003530 355 IHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSG 394 (813)
Q Consensus 355 ~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~ 394 (813)
++++++|.++..+.++ +..+.-.++..|..|+-..
T Consensus 96 ~ea~g~plii~~lssp-----~e~tv~sa~~~l~~l~~~~ 130 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSP-----PEITVHSAALFLQLLEFGE 130 (173)
T ss_pred HHhcCCceEEeecCCC-----hHHHHHHHHHHHHHhcCcc
Confidence 9999999999988764 4677778888887776543
No 107
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=3.2e-06 Score=91.97 Aligned_cols=67 Identities=25% Similarity=0.580 Sum_probs=56.3
Q ss_pred CCceecccccccCCCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCcccHhhHHHHHHHHHhh
Q 003530 30 YDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNPSIALRNTIEEWNARN 104 (813)
Q Consensus 30 ~~~~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~~~~~~ 104 (813)
.+++.||||.+.|++|++++|||+||+.||..++. + ...||.|+. ... .+.+|..+.++++.....+
T Consensus 11 ~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-----~-~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~ 77 (386)
T KOG2177|consen 11 QEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-----G-PLSCPVCRP-PSR-NLRPNVLLANLVERLRQLR 77 (386)
T ss_pred cccccChhhHHHhhcCccccccchHhHHHHHHhcC-----C-CcCCcccCC-chh-ccCccHHHHHHHHHHHhcC
Confidence 36699999999999999999999999999999997 3 378999986 322 6678888888888876654
No 108
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=0.0015 Score=71.98 Aligned_cols=358 Identities=15% Similarity=0.121 Sum_probs=213.9
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHHh
Q 003530 151 LIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIG 230 (813)
Q Consensus 151 ~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~ 230 (813)
.+..+..-+..+++.+|.....+|..+...... ....-..+.+.+++...+...|..++..++.+.........
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~----~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~-- 170 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKG----LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESL-- 170 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhc----cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhh--
Confidence 466677777888899999888888776543211 11223567788999998899999999999998776432221
Q ss_pred hhhchHHHHHHhcccCCCCHHHHHH-HHHHHHhhccCCccHHHHHHcCChHHHHHHH---ccCCHHHHHHHHHHHHHhcC
Q 003530 231 SINGAILILVGMTSSKSENLLTVEK-AEKTLANLEKCENNVRQMAENGRLQPLLTQI---LEGPQETKLSLAAFLGDLAL 306 (813)
Q Consensus 231 ~~~g~i~~Lv~lL~~~s~~~~~~~~-a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL---~~~~~~~~~~a~~~L~~L~~ 306 (813)
...+.+..|..... +.+...... +.-+....+.+ .....+-+.++.+-.+| .+....+|..+..+...+..
T Consensus 171 ~~~~~l~~l~~ai~--dk~~~~~re~~~~a~~~~~~~---Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 171 KEFGFLDNLSKAII--DKKSALNREAALLAFEAAQGN---LGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMR 245 (569)
T ss_pred hhhhHHHHHHHHhc--ccchhhcHHHHHHHHHHHHHh---cCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 23466777777776 333322222 21111111111 11122333444444444 44567788777666555432
Q ss_pred CchhHHHHHhhh----HHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHH
Q 003530 307 NSDVKVLVARTV----GSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEV 382 (813)
Q Consensus 307 ~~~~~~~i~~~g----i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~ 382 (813)
. +...| +|.++.-+.+..=..+.+++..|..+..+.+..-...-..+||.+.+.|-+. .+++++.
T Consensus 246 ~------~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT-----~~evr~a 314 (569)
T KOG1242|consen 246 C------LSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDT-----KPEVRKA 314 (569)
T ss_pred h------cCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccC-----CHHHHHH
Confidence 1 11112 3444443333333567899999999998877676777788999999999864 4999999
Q ss_pred HHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHH
Q 003530 383 SATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATIS 462 (813)
Q Consensus 383 a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~ 462 (813)
+..+|.+++..-++... ...+|.|++.+..++-.+. .+...|..-+.-......-...| ++.
T Consensus 315 ~~~~l~~~~svidN~dI------------~~~ip~Lld~l~dp~~~~~-e~~~~L~~ttFV~~V~~psLalm-----vpi 376 (569)
T KOG1242|consen 315 GIETLLKFGSVIDNPDI------------QKIIPTLLDALADPSCYTP-ECLDSLGATTFVAEVDAPSLALM-----VPI 376 (569)
T ss_pred HHHHHHHHHHhhccHHH------------HHHHHHHHHHhcCcccchH-HHHHhhcceeeeeeecchhHHHH-----HHH
Confidence 99999999885543321 4568888888865543332 33333332221111000011111 334
Q ss_pred HHHhhhCCChHHHHHHHHHHHHhCCCC--CHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHH
Q 003530 463 LVQFVEAPQNDLRLASIELIQNLSPHM--GHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTR 540 (813)
Q Consensus 463 Lv~lL~~~~~~v~~~A~~~L~~Ls~~~--~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 540 (813)
|.+=+...+..+++.++.+..|++.-. +.++...+. ..++.|-..+.+..+ ++|..++.+|+.+-.+-.+.
T Consensus 377 L~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~---~Llp~lk~~~~d~~P--EvR~vaarAL~~l~e~~g~~-- 449 (569)
T KOG1242|consen 377 LKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP---SLLPGLKENLDDAVP--EVRAVAARALGALLERLGEV-- 449 (569)
T ss_pred HHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH---HHhhHHHHHhcCCCh--hHHHHHHHHHHHHHHHHHhh--
Confidence 444444555678899999999988433 334333333 356666677777754 99999999997665422221
Q ss_pred HHHhcCcHHHHHHHhhh
Q 003530 541 QMLDEGAFGLIFSRVKS 557 (813)
Q Consensus 541 ~l~~~g~v~~L~~lL~~ 557 (813)
...+.+|.+.+.+.+
T Consensus 450 --~f~d~~p~l~e~~~~ 464 (569)
T KOG1242|consen 450 --SFDDLIPELSETLTS 464 (569)
T ss_pred --cccccccHHHHhhcc
Confidence 115677777777654
No 109
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.00051 Score=74.07 Aligned_cols=274 Identities=16% Similarity=0.124 Sum_probs=183.7
Q ss_pred ccccCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHH----HHHhhc
Q 003530 146 VHNSELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSL----LYELSK 221 (813)
Q Consensus 146 i~~~g~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~----L~~ls~ 221 (813)
+.=.+.||.|-..+..-++..|..-+.-|..|-... +....=.-....+.|..+|++++.++|..+=.+ |.++..
T Consensus 163 FsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P-~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s 241 (675)
T KOG0212|consen 163 FSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVP-DLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRS 241 (675)
T ss_pred cCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC-cHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc
Confidence 334566777777777778899988888888774432 211111224567788899999999998655544 444444
Q ss_pred CchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccCCHH-HHHHHH--
Q 003530 222 SEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQE-TKLSLA-- 298 (813)
Q Consensus 222 ~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~-~~~~a~-- 298 (813)
++..- .....++.|+.-+. +.++.++..|..-+.....-..+.....-.|++..++..+.+.++. .++.+.
T Consensus 242 ~P~s~----d~~~~i~vlv~~l~--ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~ 315 (675)
T KOG0212|consen 242 SPSSM----DYDDMINVLVPHLQ--SSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMV 315 (675)
T ss_pred Ccccc----Ccccchhhcccccc--CCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHH
Confidence 44332 33456888888888 8999999999888887765555444444557777777777766553 343332
Q ss_pred -HHHHHhcCCchhHHHHHhhh-HHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCC
Q 003530 299 -AFLGDLALNSDVKVLVARTV-GSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLP 376 (813)
Q Consensus 299 -~~L~~L~~~~~~~~~i~~~g-i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~ 376 (813)
..|..+...+..+..+.-.. +..|.+.+.+...+.+-.++.-+..|-...++.-........+.|+.-|.+. +
T Consensus 316 n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~-----s 390 (675)
T KOG0212|consen 316 NGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDR-----S 390 (675)
T ss_pred HHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCc-----h
Confidence 23444444343333333222 5888888888899999999999988888777766666677888899888764 5
Q ss_pred hhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccC
Q 003530 377 MRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSS 443 (813)
Q Consensus 377 ~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 443 (813)
..+...++.+++++|..+..+.. -.++..|++++.....-+...+.-++..||.-
T Consensus 391 d~vvl~~L~lla~i~~s~~~~~~------------~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~l 445 (675)
T KOG0212|consen 391 DEVVLLALSLLASICSSSNSPNL------------RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLL 445 (675)
T ss_pred hHHHHHHHHHHHHHhcCcccccH------------HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence 89999999999999987654311 34566666666665555555666666666543
No 110
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.98 E-value=8e-06 Score=56.83 Aligned_cols=39 Identities=44% Similarity=0.993 Sum_probs=35.0
Q ss_pred cccccccCCCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCC
Q 003530 35 CPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLT 78 (813)
Q Consensus 35 Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t 78 (813)
||||.+..++|++++|||.|+..|+..|+.. +. ..||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~----~~-~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKS----GN-NTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHh----Cc-CCCCCC
Confidence 8999999999999999999999999999983 43 679986
No 111
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.97 E-value=0.007 Score=66.10 Aligned_cols=266 Identities=14% Similarity=0.149 Sum_probs=157.2
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCC-H
Q 003530 413 DIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMG-H 491 (813)
Q Consensus 413 ~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~-~ 491 (813)
-.|...+.+|++.+|.++++++.....|+.--....+ -+.+...| ..|.+-|....+++.-....+++++..-.. .
T Consensus 604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e-~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGE-TKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcch-HHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence 4577788899999999999998887766542110000 01122222 346677777888888777777777652111 1
Q ss_pred HHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhhhccccccCCccchh
Q 003530 492 ELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTP 571 (813)
Q Consensus 492 ~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~ 571 (813)
..+..+ .|.+|.|..+|++... .+......+++.++.+.++. -.
T Consensus 681 ~mqpPi---~~ilP~ltPILrnkh~--Kv~~nti~lvg~I~~~~pey-------------------------------i~ 724 (975)
T COG5181 681 SMQPPI---SGILPSLTPILRNKHQ--KVVANTIALVGTICMNSPEY-------------------------------IG 724 (975)
T ss_pred ccCCch---hhccccccHhhhhhhH--HHhhhHHHHHHHHHhcCccc-------------------------------CC
Confidence 001111 1677888888877764 55555444443333322110 00
Q ss_pred hhHhHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHHhcCCchHHHHHHHHHHhhhccccccccCCCCCCCCCCCccc
Q 003530 572 FLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASI 651 (813)
Q Consensus 572 ~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~ls~~~~~l~~~~~~~~~~~~~~~ 651 (813)
-.+|...- =-|+.+|.+. +.+++++|-..++.+|+-..
T Consensus 725 ------------------~rEWMRIc------feLvd~Lks~-nKeiRR~A~~tfG~Is~aiG----------------- 762 (975)
T COG5181 725 ------------------VREWMRIC------FELVDSLKSW-NKEIRRNATETFGCISRAIG----------------- 762 (975)
T ss_pred ------------------HHHHHHHH------HHHHHHHHHh-hHHHHHhhhhhhhhHHhhcC-----------------
Confidence 11222211 1357888888 88999999888887764210
Q ss_pred ccccccCCCCCCCCcccccccCccccchhhhccchHHHHHhhccCchhHHHHHHHHHHhhhhcCcchhhHHHHHHhhcCc
Q 003530 652 FPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGI 731 (813)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~~~~~v 731 (813)
-...+..|++-|+.++-.-|.-...|++..+..-- -..++
T Consensus 763 ------------------------------PqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg----------pfsVl 802 (975)
T COG5181 763 ------------------------------PQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG----------PFSVL 802 (975)
T ss_pred ------------------------------HHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC----------chhhH
Confidence 12355667777777777766666666666552211 11445
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHcc-hhhhhhhcCCCcchHHHHHHhhhcCchhHHHHHHHHHHhccc
Q 003530 732 KPILDVLLEKRTENLQRRAVWVVERILRT-DDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKI 802 (813)
Q Consensus 732 ~~L~~ll~~~~~~~~~~~a~~aL~~i~~~-~~~~~~~~~~~~~~~~Lv~~l~~~~~~~~~~Aa~~L~~l~~~ 802 (813)
|.|..=- +.++.++|.-.+.++.-+|.. .+....|.- ...+.|-++|.+.|+.-|+.|+.+++||.--
T Consensus 803 P~lm~dY-~TPe~nVQnGvLkam~fmFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Ln 871 (975)
T COG5181 803 PTLMSDY-ETPEANVQNGVLKAMCFMFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLN 871 (975)
T ss_pred HHHHhcc-cCchhHHHHhHHHHHHHHHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcC
Confidence 6554433 356667777777776666643 333333321 1234677899999999999999999999853
No 112
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.0024 Score=64.30 Aligned_cols=265 Identities=13% Similarity=0.098 Sum_probs=160.1
Q ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHH-HHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhHHHH
Q 003530 236 ILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQ-MAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLV 314 (813)
Q Consensus 236 i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~-i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i 314 (813)
+..|+.++. +.+|.++..|+.-|.+++.. ..+.- -.+.-.++.+.+++...++ .+.++.+|.|++.+...+..+
T Consensus 5 l~elv~ll~--~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~l 79 (353)
T KOG2973|consen 5 LVELVELLH--SLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKL 79 (353)
T ss_pred HHHHHHHhc--cCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHH
Confidence 345788888 88999999999999988665 22221 1133567788888887766 667889999999988776666
Q ss_pred HhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHH-H-c----CChHHHHHHHhccCCCCCChhHHHHHHHHHH
Q 003530 315 ARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLI-H-A----GILPPLVKDLFTVGSNHLPMRLKEVSATILA 388 (813)
Q Consensus 315 ~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~-~-~----g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~ 388 (813)
-..-+..++.++.++........+..|.||+..+.....+. . . .++..++...-..+-+ ...--.+-+-+++
T Consensus 80 l~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n--~~a~f~ylA~vf~ 157 (353)
T KOG2973|consen 80 LQDLLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYN--AYAEFHYLAPVFA 157 (353)
T ss_pred HHHHHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccc--cccchhHHHHHHH
Confidence 55555777888877766778889999999999765444332 1 1 3455555554443311 1233456778999
Q ss_pred HHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHH-HHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHH---
Q 003530 389 NVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIE-CKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLV--- 464 (813)
Q Consensus 389 nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~-~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv--- 464 (813)
||++...++.-+ +....+...-+.-+.+.+..+| ...+.+|.|+|.+...... +.. ..+..|.
T Consensus 158 nls~~~~gR~l~--------~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~----lL~-e~~~lLp~iL 224 (353)
T KOG2973|consen 158 NLSQFEAGRKLL--------LEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEV----LLD-ESINLLPAIL 224 (353)
T ss_pred HHhhhhhhhhHh--------cchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHH----Hhc-chHHHHHHHH
Confidence 999887776532 1112111122222233334444 3477788888877542111 111 2222221
Q ss_pred ---------------------Hhhh-----CCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCCh
Q 003530 465 ---------------------QFVE-----APQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGIS 518 (813)
Q Consensus 465 ---------------------~lL~-----~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~ 518 (813)
++|. .+++++|..-+.++..|+..... .+.++.. ++.++++-+.......
T Consensus 225 lPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~G--Re~lR~k--gvYpilRElhk~e~de 300 (353)
T KOG2973|consen 225 LPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAG--REVLRSK--GVYPILRELHKWEEDE 300 (353)
T ss_pred hhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHh--HHHHHhc--CchHHHHHHhcCCCcH
Confidence 2332 34567888878777777732222 2567765 6666777776655423
Q ss_pred HHHHHH
Q 003530 519 KEQAAA 524 (813)
Q Consensus 519 ~~~~~a 524 (813)
+++.++
T Consensus 301 d~~~ac 306 (353)
T KOG2973|consen 301 DIREAC 306 (353)
T ss_pred HHHHHH
Confidence 444443
No 113
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.92 E-value=0.0087 Score=69.59 Aligned_cols=542 Identities=15% Similarity=0.120 Sum_probs=297.5
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcC-chhHhHH
Q 003530 151 LIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKS-EALCEKI 229 (813)
Q Consensus 151 ~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~-~~~~~~i 229 (813)
++|.+-+.+ .++.++...++.-++.+.... ...+ ...-..+++-.+.......+|+.++..|...+.. +.... .
T Consensus 122 lipf~~e~~-~~~dev~~~~a~~~~~~~~~v-~~~~--~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~-~ 196 (759)
T KOG0211|consen 122 LIPFLTEAE-DDEDEVLLDLAEQLGTFLPDV-GGPE--YAHMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKL-R 196 (759)
T ss_pred hhhHHHHhc-cchhHHHHHHHHHhcccchhc-cchh--HHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHH-H
Confidence 566666666 566777777777777665532 1111 1223345555555565666788888888877642 22211 1
Q ss_pred hhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCch
Q 003530 230 GSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSD 309 (813)
Q Consensus 230 ~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~ 309 (813)
.-.+ +|+..+.. ++-...+..++++...+...-.. ..++...-+..-++-++..+.++..++.-+++++..-.
T Consensus 197 ---~~lv-~l~~~l~~-~d~~~sr~sacglf~~~~~~~~~--~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~ 269 (759)
T KOG0211|consen 197 ---EHLV-PLLKRLAT-GDWFQSRLSACGLFGKLYVSLPD--DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLE 269 (759)
T ss_pred ---HHHH-HHHHHccc-hhhhhcchhhhhhhHHhccCCCh--HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHH
Confidence 0122 33333331 22222344555555554322221 11222222233333445577888888888888765322
Q ss_pred hHHHHHhhh-HHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHH
Q 003530 310 VKVLVARTV-GSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILA 388 (813)
Q Consensus 310 ~~~~i~~~g-i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~ 388 (813)
. .....+ ++.++++..+....+++.|...+.++...-..... ......+.++...... +..++........
T Consensus 270 ~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d-~~~~~~~~l~~~~~d~-----~~~v~~~~~~~~~ 341 (759)
T KOG0211|consen 270 S--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDD-VVKSLTESLVQAVEDG-----SWRVSYMVADKFS 341 (759)
T ss_pred H--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchh-hhhhhhHHHHHHhcCh-----hHHHHHHHhhhhh
Confidence 2 344445 58888899888889999999999888763211111 1122556677766653 3666666666666
Q ss_pred HHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhh
Q 003530 389 NVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVE 468 (813)
Q Consensus 389 nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~ 468 (813)
-+...-.. .......+++...+++....+.+...+.-...++..-.. .....+.....++.+..+..
T Consensus 342 ~L~~~~~~-----------~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~--~~~~~i~~~~ilp~~~~lv~ 408 (759)
T KOG0211|consen 342 ELSSAVGP-----------SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNA--SCYPNIPDSSILPEVQVLVL 408 (759)
T ss_pred hHHHHhcc-----------ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCc--ccccccchhhhhHHHHHHHh
Confidence 65542211 112234467777888776666666655555555443210 11122333444677777888
Q ss_pred CCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcH
Q 003530 469 APQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAF 548 (813)
Q Consensus 469 ~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v 548 (813)
+.+..++...+.-...++.-.+.+ ..+. -.++.++..+++... +++..-...+..+-..+............+
T Consensus 409 d~~~~vr~a~a~~~~~~~p~~~k~--~ti~---~llp~~~~~l~de~~--~V~lnli~~ls~~~~v~~v~g~~~~s~slL 481 (759)
T KOG0211|consen 409 DNALHVRSALASVITGLSPILPKE--RTIS---ELLPLLIGNLKDEDP--IVRLNLIDKLSLLEEVNDVIGISTVSNSLL 481 (759)
T ss_pred cccchHHHHHhccccccCccCCcC--cCcc---ccChhhhhhcchhhH--HHHHhhHHHHHHHHhccCcccchhhhhhhh
Confidence 888888877666666655333321 1111 345566666666665 777776665555544333333344444555
Q ss_pred HHHHHHhhhhccccccCCccchhhhHhHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHHhcCCchHHHHHHHHHHhh
Q 003530 549 GLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALEN 628 (813)
Q Consensus 549 ~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~ 628 (813)
|.+..+-.+. ...+.......+-.++.. .. . .+.+...-+.+...+.+. ...++..|+..+..
T Consensus 482 p~i~el~~d~----------~wRvr~ail~~ip~la~q----~~-~-~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~ 544 (759)
T KOG0211|consen 482 PAIVELAEDL----------LWRVRLAILEYIPQLALQ----LG-V-EFFDEKLAELLRTWLPDH-VYSIREAAARNLPA 544 (759)
T ss_pred hhhhhhccch----------hHHHHHHHHHHHHHHHHh----hh-h-HHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHH
Confidence 5555553321 122333333333333311 00 1 111111222333334444 56788888888876
Q ss_pred hccccccccCCCCCCCCCCCcccccccccCCCCCCCCcccccccCccccchhhhccchHHHHHhhccCchhHHHHHHHHH
Q 003530 629 LSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAAL 708 (813)
Q Consensus 629 ls~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gai~~Lv~lL~~~~~~v~~~A~~AL 708 (813)
++..-. . + |. ...-|+.+.....+++--.|...+.++
T Consensus 545 l~~~~G-~----~----------w~----------------------------~~~~i~k~L~~~~q~~y~~R~t~l~si 581 (759)
T KOG0211|consen 545 LVETFG-S----E----------WA----------------------------RLEEIPKLLAMDLQDNYLVRMTTLFSI 581 (759)
T ss_pred HHHHhC-c----c----------hh----------------------------HHHhhHHHHHHhcCcccchhhHHHHHH
Confidence 654211 0 0 00 122455555555566778888888888
Q ss_pred HhhhhcCcchhhHHHHHHhhcCcHHHHHHHhhcCChHHHHHHHHHHHHHHcchhhhhhhcCCCcchHHHHHHhhhcCchh
Q 003530 709 STVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRT 788 (813)
Q Consensus 709 ~~L~~~~~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~~a~~aL~~i~~~~~~~~~~~~~~~~~~~Lv~~l~~~~~~~ 788 (813)
..|+.- .-..+....=++.+.++. ....++++.+++..|..|...-... ..+..+.+.++.+.++.+.++
T Consensus 582 ~~la~v------~g~ei~~~~Llp~~~~l~-~D~vanVR~nvak~L~~i~~~L~~~---~~~~~v~pll~~L~~d~~~dv 651 (759)
T KOG0211|consen 582 HELAEV------LGQEITCEDLLPVFLDLV-KDPVANVRINVAKHLPKILKLLDES---VRDEEVLPLLETLSSDQELDV 651 (759)
T ss_pred HHHHHH------hccHHHHHHHhHHHHHhc-cCCchhhhhhHHHHHHHHHhhcchH---HHHHHHHHHHHHhccCcccch
Confidence 876632 113445556677777777 4888899999999999998552211 112234467888888888899
Q ss_pred HHHHHHHHHHhccc
Q 003530 789 RQIAERALKHIDKI 802 (813)
Q Consensus 789 ~~~Aa~~L~~l~~~ 802 (813)
|..|..++..+...
T Consensus 652 r~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 652 RYRAILAFGSIELS 665 (759)
T ss_pred hHHHHHHHHHHHHH
Confidence 99998888766543
No 114
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.89 E-value=6.4e-05 Score=63.44 Aligned_cols=87 Identities=24% Similarity=0.332 Sum_probs=69.5
Q ss_pred hHHHHHHH-hcCCchHHHHHHHHHHhhhccccccccCCCCCCCCCCCcccccccccCCCCCCCCcccccccCccccchhh
Q 003530 603 AALFIELL-QSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLL 681 (813)
Q Consensus 603 i~~L~~lL-~~~~~~~vk~~Aa~aL~~ls~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 681 (813)
||.|++.| +++ ++.+|..|+.+|+.+.
T Consensus 1 i~~L~~~l~~~~-~~~vr~~a~~~L~~~~--------------------------------------------------- 28 (88)
T PF13646_consen 1 IPALLQLLQNDP-DPQVRAEAARALGELG--------------------------------------------------- 28 (88)
T ss_dssp HHHHHHHHHTSS-SHHHHHHHHHHHHCCT---------------------------------------------------
T ss_pred CHHHHHHHhcCC-CHHHHHHHHHHHHHcC---------------------------------------------------
Confidence 57888988 555 9999999999997432
Q ss_pred hccchHHHHHhhccCchhHHHHHHHHHHhhhhcCcchhhHHHHHHhhcCcHHHHHHHhhcCChHHHHHHHHHHH
Q 003530 682 EGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVE 755 (813)
Q Consensus 682 ~~gai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~~a~~aL~ 755 (813)
...+++.|++++.++|+.||..|+.||+.+.. ..+++.|.+++.+..+..++..|+++|+
T Consensus 29 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------------~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 29 DPEAIPALIELLKDEDPMVRRAAARALGRIGD--------------PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 23479999999999999999999999998852 2577889999964455667899988874
No 115
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.88 E-value=0.0018 Score=72.10 Aligned_cols=282 Identities=16% Similarity=0.124 Sum_probs=180.3
Q ss_pred HHHHHHHhhcCchhHhHHhhhhchHHHHHHhc--------ccCCCCHHHHHHHHHHHHhhcc-CCccHHHHHHcCChHHH
Q 003530 212 AVSLLYELSKSEALCEKIGSINGAILILVGMT--------SSKSENLLTVEKAEKTLANLEK-CENNVRQMAENGRLQPL 282 (813)
Q Consensus 212 a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL--------~~~s~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~G~i~~L 282 (813)
|+.+|+-++.++.+.+.+.. ..++..|.++- .....++.+...|.++|.|+-. ++..+..+++.|+.+.+
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~-~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFT-EEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred CHHHHHHHccCcccchhhcc-HHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 35678888999988888874 57788888877 1225778999999999999954 56667788899999999
Q ss_pred HHHHccC-----CHHHHHHHHHHHHHhcC-CchhHHHHH-hh-hHHHHHHHHhc--------C---------CHHHHHHH
Q 003530 283 LTQILEG-----PQETKLSLAAFLGDLAL-NSDVKVLVA-RT-VGSCLINIMKS--------G---------NMQAREAA 337 (813)
Q Consensus 283 v~lL~~~-----~~~~~~~a~~~L~~L~~-~~~~~~~i~-~~-gi~~Lv~lL~~--------~---------~~~~~~~a 337 (813)
++.|+.. +.++.....++|.-++. ..+.+..+. +. |+..++..|.. . .......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 9999987 78889889999988876 455554444 43 45555554421 0 23456788
Q ss_pred HHHHHHhhCCcccHHHHHHcCChHHHHHHHhcc---C-CCCCChhHHHHHHHHHHHHHhcCCCC---cccccCCCCcccc
Q 003530 338 LKALNQISSCEPSAKVLIHAGILPPLVKDLFTV---G-SNHLPMRLKEVSATILANVVNSGHDF---DSITVGPDNQTLV 410 (813)
Q Consensus 338 ~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~---~-~~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~~~~~~l~ 410 (813)
++.|.|+..+......-...+.++.|+.++... . ...+.....-.++.+|.|+--..... .....+.......
T Consensus 160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~ 239 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD 239 (446)
T ss_pred HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence 999999987543222212344667777766644 2 22344566777777777762111110 0000000001123
Q ss_pred chhhHHHHHHhhcC-----CC---hHHHHHHHHHHHHcccCCCchHHHHHHHHh---------------cCC-HHHHHHh
Q 003530 411 SEDIVHNLLHLISN-----TG---PTIECKLLQVLVGLTSSPTTVLSVVSAIKS---------------SGA-TISLVQF 466 (813)
Q Consensus 411 ~~~~v~~Lv~lL~~-----~~---~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~---------------~g~-i~~Lv~l 466 (813)
....+..|+.+|.. .. .+.....+.+|.+++.... ..++.++. .+. -..|+++
T Consensus 240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~---~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrL 316 (446)
T PF10165_consen 240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAR---EVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRL 316 (446)
T ss_pred ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcH---HHHHHHHHHhCCChhhcccCCCCCcchHHHHHHH
Confidence 35567788877752 11 1334455666677776643 34444443 223 3578999
Q ss_pred hhCCChHHHHHHHHHHHHhCCCCCHHHHHHH
Q 003530 467 VEAPQNDLRLASIELIQNLSPHMGHELADAL 497 (813)
Q Consensus 467 L~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l 497 (813)
+.++.+.++..+..+|..|++.....+.+.+
T Consensus 317 mt~~~~~~k~~vaellf~Lc~~d~~~~v~~~ 347 (446)
T PF10165_consen 317 MTSPDPQLKDAVAELLFVLCKEDASRFVKYV 347 (446)
T ss_pred hCCCCchHHHHHHHHHHHHHhhhHHHHHHHc
Confidence 9999999999999999999865444444443
No 116
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.85 E-value=2.8e-05 Score=54.86 Aligned_cols=41 Identities=29% Similarity=0.255 Sum_probs=37.6
Q ss_pred ChHHHHHHHHcCchHHHHHHHhcCCchHHHHHHHHHHhhhcc
Q 003530 590 EPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSL 631 (813)
Q Consensus 590 ~~~~~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~ls~ 631 (813)
+++.++.+.++|++|.|+++|+++ ++.+++.|+++|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence 467888999999999999999988 99999999999999873
No 117
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.0041 Score=69.53 Aligned_cols=368 Identities=15% Similarity=0.143 Sum_probs=222.0
Q ss_pred hcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHH
Q 003530 159 LKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIGSINGAILI 238 (813)
Q Consensus 159 L~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~ 238 (813)
|++++.-+|-..++.|+.|-.. + .-...+|.+-..|.+.+.-+|++|+-++..+-+.. +.+. +.+-+.
T Consensus 108 LQHPNEyiRG~TLRFLckLkE~-----E--Llepl~p~IracleHrhsYVRrNAilaifsIyk~~---~~L~--pDapeL 175 (948)
T KOG1058|consen 108 LQHPNEYIRGSTLRFLCKLKEP-----E--LLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF---EHLI--PDAPEL 175 (948)
T ss_pred ccCchHhhcchhhhhhhhcCcH-----H--HhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh---hhhc--CChHHH
Confidence 5678888888888888877321 1 12346788888999999999999999998876541 1121 334444
Q ss_pred HHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhHHHHHhhh
Q 003530 239 LVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTV 318 (813)
Q Consensus 239 Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g 318 (813)
+-..|.. ..|+..+++|...|... +++....-. ..-+.-..+-++.++.-.+..+...+..+... ...-
T Consensus 176 i~~fL~~-e~DpsCkRNAFi~L~~~--D~ErAl~Yl-----~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~---~~~~ 244 (948)
T KOG1058|consen 176 IESFLLT-EQDPSCKRNAFLMLFTT--DPERALNYL-----LSNIDQIPSFNDSLQLVIVELIRKVCLANPAE---KARY 244 (948)
T ss_pred HHHHHHh-ccCchhHHHHHHHHHhc--CHHHHHHHH-----HhhHhhccCccHHHHHHHHHHHHHHHhcCHHH---hhHH
Confidence 4455543 67889999988877664 222111111 11111112224566666677777666522111 1112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCc
Q 003530 319 GSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFD 398 (813)
Q Consensus 319 i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~ 398 (813)
+..+..+|.+.++.+...|+++|..|+..|..-+. +...+++++-..+ +..++--...-|..+... .+
T Consensus 245 i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~-----Aa~~~i~l~~kes----dnnvklIvldrl~~l~~~---~~ 312 (948)
T KOG1058|consen 245 IRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKA-----AASTYIDLLVKES----DNNVKLIVLDRLSELKAL---HE 312 (948)
T ss_pred HHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHH-----HHHHHHHHHHhcc----CcchhhhhHHHHHHHhhh---hH
Confidence 68889999999999999999999999998765444 3456777776643 345554444445444421 22
Q ss_pred ccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHH-hhhCC------C
Q 003530 399 SITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQ-FVEAP------Q 471 (813)
Q Consensus 399 ~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~-lL~~~------~ 471 (813)
. .-++.+-.++++|.+++-+++.+++.....|..+... +++.. .|-. +.+.. +
T Consensus 313 ~----------il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNv-ediv~---------~Lkke~~kT~~~e~d~~ 372 (948)
T KOG1058|consen 313 K----------ILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNV-EDIVQ---------FLKKEVMKTHNEESDDN 372 (948)
T ss_pred H----------HHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccH-HHHHH---------HHHHHHHhccccccccc
Confidence 1 1257777888999999999999999999999887542 22222 2211 11111 1
Q ss_pred hHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHH
Q 003530 472 NDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLI 551 (813)
Q Consensus 472 ~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L 551 (813)
.+-|+.-.+.+...+-..++-.. ..++.|++++.+.+. ..-...+..+.......+.++. ..+..+
T Consensus 373 ~~yRqlLiktih~cav~Fp~~aa-------tvV~~ll~fisD~N~--~aas~vl~FvrE~iek~p~Lr~-----~ii~~l 438 (948)
T KOG1058|consen 373 GKYRQLLIKTIHACAVKFPEVAA-------TVVSLLLDFISDSNE--AAASDVLMFVREAIEKFPNLRA-----SIIEKL 438 (948)
T ss_pred hHHHHHHHHHHHHHhhcChHHHH-------HHHHHHHHHhccCCH--HHHHHHHHHHHHHHHhCchHHH-----HHHHHH
Confidence 23466667778777754443321 478889999998885 4333444444443333444433 344556
Q ss_pred HHHhhhhccccccCCccchhhhHhHHHHHHHHhccCCCChHHHH---HHH-HcCchHHHH
Q 003530 552 FSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIA---LCC-EHNLAALFI 607 (813)
Q Consensus 552 ~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~~~~~---~~~-~~~~i~~L~ 607 (813)
+..+...+. ..+-+++++++..++.. ..+.+. .++ ..|-+|.+.
T Consensus 439 ~~~~~~irS---------~ki~rgalwi~GeYce~---~~~i~~~~k~i~~slGEvp~~~ 486 (948)
T KOG1058|consen 439 LETFPQIRS---------SKICRGALWILGEYCEG---LSEIQSVIKIIRQSLGEVPIVC 486 (948)
T ss_pred HHhhhhhcc---------cccchhHHHHHHHHHhh---hHHHHHHHHHHHHhccccceeh
Confidence 655554332 34567888888888854 443333 222 246666554
No 118
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.79 E-value=0.0033 Score=67.88 Aligned_cols=257 Identities=16% Similarity=0.112 Sum_probs=170.9
Q ss_pred HHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHH
Q 003530 174 LRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTV 253 (813)
Q Consensus 174 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~ 253 (813)
|..+.+.++.-|..+.-....+.+..++=+++.++|..+..+++.+..+.+.-+.+.+ .+.--.++.-|.....+..-+
T Consensus 7 Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~-l~id~~ii~SL~~~~~~~~ER 85 (371)
T PF14664_consen 7 LVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLK-LHIDIFIIRSLDRDNKNDVER 85 (371)
T ss_pred HHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHH-cCCchhhHhhhcccCCChHHH
Confidence 3444444444444444444555555555455589999999999999999988877764 355455566665434566678
Q ss_pred HHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcC-CchhHHHHHh-hhHHHHHHHHhcCCH
Q 003530 254 EKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVAR-TVGSCLINIMKSGNM 331 (813)
Q Consensus 254 ~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~-~gi~~Lv~lL~~~~~ 331 (813)
+.|...++.+...+++...+ ..|.+..+|....+.++..+..+..+|..++. +++ .+.+ +|+..|++.+.++..
T Consensus 86 ~QALkliR~~l~~~~~~~~~-~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~ 161 (371)
T PF14664_consen 86 EQALKLIRAFLEIKKGPKEI-PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSF 161 (371)
T ss_pred HHHHHHHHHHHHhcCCcccC-CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccH
Confidence 89999998886554443332 44788899999999999999999999999987 342 2334 468999999888777
Q ss_pred HHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccC--CCCCCh--hHHHHHHHHHHHHHhcCCCCcccccCCCCc
Q 003530 332 QAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVG--SNHLPM--RLKEVSATILANVVNSGHDFDSITVGPDNQ 407 (813)
Q Consensus 332 ~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~~~~~--~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~ 407 (813)
++.+..+.++..+-.+|..|+.+...--+..++.-+.+.. ...... +.-..+..++..+-++=++--.+.
T Consensus 162 ~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~------ 235 (371)
T PF14664_consen 162 SISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLS------ 235 (371)
T ss_pred hHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeee------
Confidence 7899999999999999998887665444566665555431 000112 233445555555544333222111
Q ss_pred cccchhhHHHHHHhhcCCChHHHHHHHHHHHHccc
Q 003530 408 TLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTS 442 (813)
Q Consensus 408 ~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 442 (813)
.....++..|+..|..+.+++++..+..++.+-.
T Consensus 236 -~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 236 -MNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred -cCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence 1112578888888888888888777777765544
No 119
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.79 E-value=2.9e-05 Score=54.76 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=37.7
Q ss_pred cchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhc
Q 003530 182 DDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSK 221 (813)
Q Consensus 182 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~ 221 (813)
++++..+++.|++|.|+++|++++.+++++|+++|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999999999999999973
No 120
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.77 E-value=3.9e-05 Score=64.79 Aligned_cols=86 Identities=27% Similarity=0.405 Sum_probs=69.6
Q ss_pred hHHHHHhh-ccCchhHHHHHHHHHHhhhhcCcchhhHHHHHHhhcCcHHHHHHHhhcCChHHHHHHHHHHHHHHcchhhh
Q 003530 686 VEKLIALL-DHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIA 764 (813)
Q Consensus 686 i~~Lv~lL-~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~~a~~aL~~i~~~~~~~ 764 (813)
|+.|++.| .++++.+|..|+.+|+++.. ..+++.|++++ +++++.++..|+++|+++-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--------------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~------ 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--------------PEAIPALIELL-KDEDPMVRRAAARALGRIG------ 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--------------HHHHHHHHHHH-TSSSHHHHHHHHHHHHCCH------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--------------HhHHHHHHHHH-cCCCHHHHHHHHHHHHHhC------
Confidence 67899999 89999999999999996631 14578999999 5999999999999999983
Q ss_pred hhhcCCCcchHHHHHHhhhcCc-hhHHHHHHHHH
Q 003530 765 YEVSGDPNVSTALVDAFQHADY-RTRQIAERALK 797 (813)
Q Consensus 765 ~~~~~~~~~~~~Lv~~l~~~~~-~~~~~Aa~~L~ 797 (813)
+....+.|++++.+.+. .+|..|+.+|.
T Consensus 60 -----~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -----DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -----HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12345789999988764 56899998874
No 121
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.74 E-value=2.1e-05 Score=56.26 Aligned_cols=40 Identities=23% Similarity=0.436 Sum_probs=33.9
Q ss_pred cccccccC---CCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCc
Q 003530 35 CPLTKQVM---RDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQK 80 (813)
Q Consensus 35 Cpi~~~~m---~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~ 80 (813)
||+|.+.+ ..|++++|||+||..|+.++.. . ...||+|++
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~-----~-~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLKG-----K-SVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHHHHHHHHhhcC-----C-CCCCcCCCC
Confidence 89999998 4578899999999999999982 2 378999974
No 122
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=3.6e-05 Score=83.09 Aligned_cols=74 Identities=26% Similarity=0.451 Sum_probs=66.3
Q ss_pred ccCCCCCceecccccccCCCceecC-CCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCcccHhhHHHHHHHHHh
Q 003530 25 HIEPIYDAFVCPLTKQVMRDPVTLE-NGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNPSIALRNTIEEWNAR 103 (813)
Q Consensus 25 ~~~~~~~~~~Cpi~~~~m~dpv~~~-~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~~~~~ 103 (813)
..+++|++|..|++..+|+|||++| +|.+.+|+.|..++-. ..+.|+-+.++...+.+||..||+.|-.|...
T Consensus 847 D~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls------d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~ 920 (929)
T COG5113 847 DMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS------DGTDPFNRMPLTLDDVTPNAELREKINRFYKC 920 (929)
T ss_pred hccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc------CCCCccccCCCchhhcCCCHHHHHHHHHHHhc
Confidence 3788999999999999999999975 5799999999999985 36899999999989999999999999998655
Q ss_pred h
Q 003530 104 N 104 (813)
Q Consensus 104 ~ 104 (813)
.
T Consensus 921 k 921 (929)
T COG5113 921 K 921 (929)
T ss_pred c
Confidence 3
No 123
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=2.3e-05 Score=83.66 Aligned_cols=59 Identities=22% Similarity=0.429 Sum_probs=49.4
Q ss_pred CceecccccccCCCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCccc
Q 003530 31 DAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNPS 90 (813)
Q Consensus 31 ~~~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~~l~pn 90 (813)
.+..||||.+...=|+.+.|||.||-.||-+||....-.+. ..||.|+..+...++.|-
T Consensus 185 t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~-~~CPiC~s~I~~kdl~pv 243 (513)
T KOG2164|consen 185 TDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGP-CSCPICRSTITLKDLLPV 243 (513)
T ss_pred cCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCC-ccCCchhhhccccceeee
Confidence 37999999999999999999999999999999987333354 789999988776676663
No 124
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.69 E-value=4.6e-05 Score=77.59 Aligned_cols=52 Identities=27% Similarity=0.497 Sum_probs=39.3
Q ss_pred Cceeccccccc-CCCce----ecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCC
Q 003530 31 DAFVCPLTKQV-MRDPV----TLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDL 87 (813)
Q Consensus 31 ~~~~Cpi~~~~-m~dpv----~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~~l 87 (813)
++..||+|+.- ...|- +-+|||+||++||...|.. |. ..||.|+.++....+
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~----~~-~~CP~C~~~lrk~~f 58 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR----GS-GSCPECDTPLRKNNF 58 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcC----CC-CCCCCCCCccchhhc
Confidence 34689999983 34452 2379999999999998864 54 789999988765443
No 125
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.0043 Score=68.42 Aligned_cols=255 Identities=16% Similarity=0.181 Sum_probs=171.4
Q ss_pred CCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhcc-C--C-
Q 003530 192 DTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEK-C--E- 267 (813)
Q Consensus 192 g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~-~--~- 267 (813)
++...|+.+..+.|..+|.+|+..|..|+..-..-+.+ ....+++++ +++.+++..|+.+++-.+. . +
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~------Y~~A~~~ls--D~~e~VR~aAvqlv~v~gn~~p~~~ 269 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKAC------YSRAVKHLS--DDYEDVRKAAVQLVSVWGNRCPAPL 269 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHH------HHHHHHHhc--chHHHHHHHHHHHHHHHHhcCCCcc
Confidence 44555888889999999999999999887743333333 345678888 7888999998777665432 1 1
Q ss_pred ---ccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 003530 268 ---NNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQI 344 (813)
Q Consensus 268 ---~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~L 344 (813)
.+..++.+ .++..+-..+++.+-.++..|+.+|+.+..-. ...|.+.-=+.++.-++. ..........|..=
T Consensus 270 e~e~~e~kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS--ee~i~QTLdKKlms~lRR--kr~ahkrpk~l~s~ 344 (823)
T KOG2259|consen 270 ERESEEEKLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS--EEIIQQTLDKKLMSRLRR--KRTAHKRPKALYSS 344 (823)
T ss_pred cchhhhhhhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhH--HHHHHHHHHHHHhhhhhh--hhhcccchHHHHhc
Confidence 12223332 35677888888889999999999998875311 111111101222222211 11111122222221
Q ss_pred h-------------C--CcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccc
Q 003530 345 S-------------S--CEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTL 409 (813)
Q Consensus 345 s-------------~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l 409 (813)
. . .++....++..|+-..+|.-|.+. -.++++.|+..+..|+.+.++..
T Consensus 345 GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-----f~EVR~AAV~Sl~~La~ssP~FA----------- 408 (823)
T KOG2259|consen 345 GEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-----FYEVRRAAVASLCSLATSSPGFA----------- 408 (823)
T ss_pred CCcccCccccccCchhhccccccccccccccceeeeechHH-----HHHHHHHHHHHHHHHHcCCCCcH-----------
Confidence 1 0 112334677889888898888764 37999999999999999877543
Q ss_pred cchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhC
Q 003530 410 VSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLS 486 (813)
Q Consensus 410 ~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls 486 (813)
...+.-|+.++++....+|.+|+.+|..++.+-...+ .-++.+..-|.+.++++|.+.-.+|.+.-
T Consensus 409 --~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~e---------eql~~il~~L~D~s~dvRe~l~elL~~~~ 474 (823)
T KOG2259|consen 409 --VRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIRE---------EQLRQILESLEDRSVDVREALRELLKNAR 474 (823)
T ss_pred --HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecH---------HHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 4678899999999999999999999999987733212 22677788899999999999888888754
No 126
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.66 E-value=2.2e-05 Score=79.08 Aligned_cols=66 Identities=21% Similarity=0.376 Sum_probs=53.6
Q ss_pred CCCceecccccccCCCcee-cCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCC----CCcccHhhHHHHHHH
Q 003530 29 IYDAFVCPLTKQVMRDPVT-LENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRST----DLNPSIALRNTIEEW 100 (813)
Q Consensus 29 ~~~~~~Cpi~~~~m~dpv~-~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~----~l~pn~~l~~~I~~~ 100 (813)
.....+|++|+.+|.|+.| +.|=|||||+||-+++.. ..+||.|+..+... .+.++++++.++..+
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~------~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE------SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH------hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 3456999999999999987 689999999999999997 48999998766443 356667777776665
No 127
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.66 E-value=0.14 Score=55.88 Aligned_cols=545 Identities=13% Similarity=0.068 Sum_probs=288.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHH----HHhccCcH-HHHHHHHHHHHHhhcCchhHhHH
Q 003530 155 IIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIV----KFLSHELS-REREEAVSLLYELSKSEALCEKI 229 (813)
Q Consensus 155 Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv----~lL~~~~~-~~~~~a~~~L~~ls~~~~~~~~i 229 (813)
..+.|.++.+.....|...+..++.-. .-.+.-|.|. +....+.+ ..+.+++.++.+.+.+......+
T Consensus 99 al~aL~s~epr~~~~Aaql~aaIA~~E-------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li 171 (858)
T COG5215 99 ALRALKSPEPRFCTMAAQLLAAIARME-------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLI 171 (858)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHhh-------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHH
Confidence 455677888888888888888776533 2234444444 44444433 45789999999998877664444
Q ss_pred hhhhchHHHHHH-hcccCCCCHHHHHHHHHHHHh-hccC------CccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHH
Q 003530 230 GSINGAILILVG-MTSSKSENLLTVEKAEKTLAN-LEKC------ENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFL 301 (813)
Q Consensus 230 ~~~~g~i~~Lv~-lL~~~s~~~~~~~~a~~~L~~-L~~~------~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L 301 (813)
...+..+-.++. -+++ ..+..++-.|..+|.+ |-.. ++++..+ .....+.-+.++.+++..+..+|
T Consensus 172 ~~sN~il~aiv~ga~k~-et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~-----mqvvceatq~~d~e~q~aafgCl 245 (858)
T COG5215 172 QMSNVILFAIVMGALKN-ETTSAVRLAALKALMDSLMFVQGNFCYEEERNYF-----MQVVCEATQGNDEELQHAAFGCL 245 (858)
T ss_pred HHhhHHHHHHHHhhccc-CchHHHHHHHHHHHHHHHHHHHHhhcchhhhchh-----heeeehhccCCcHHHHHHHHHHH
Confidence 333333333333 3442 4566788888888887 3211 1222222 22334455667889999888888
Q ss_pred HHhcC-CchhHHHHHhhhH-HHHHHHHhcCCHHHHHHHHHHHHHhhCCc-ccHHHHH----------------HcCChHH
Q 003530 302 GDLAL-NSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCE-PSAKVLI----------------HAGILPP 362 (813)
Q Consensus 302 ~~L~~-~~~~~~~i~~~gi-~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~----------------~~g~i~~ 362 (813)
..+-. .-..-...-+..+ ....+.+++.++++...+...-..+|... +..-... -++++|.
T Consensus 246 ~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~ 325 (858)
T COG5215 246 NKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPE 325 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHH
Confidence 87754 2233234444444 45566778899998888887666666422 1111111 2457899
Q ss_pred HHHHHhccCCC--CCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHc
Q 003530 363 LVKDLFTVGSN--HLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGL 440 (813)
Q Consensus 363 Lv~lL~~~~~~--~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L 440 (813)
|+.+|...+.+ +.+-.....|..+|.-.+....++ +... ++.-.-.-+++++-.-++.++-++..+
T Consensus 326 lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~-----------i~~p-Vl~FvEqni~~~~w~nreaavmAfGSv 393 (858)
T COG5215 326 LLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK-----------IMRP-VLGFVEQNIRSESWANREAAVMAFGSV 393 (858)
T ss_pred HHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhH-----------hHHH-HHHHHHHhccCchhhhHHHHHHHhhhh
Confidence 99999875432 112334445555555544433221 1111 222222345667778888999999988
Q ss_pred ccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcC--CCCh
Q 003530 441 TSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISEN--VGIS 518 (813)
Q Consensus 441 ~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~--~~~~ 518 (813)
-.+|.. ..+..+. ..+++.+..++.++.--++..++|++..++++.. ..+.+. |.+..-++.+.-+ +. .
T Consensus 394 m~gp~~--~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va----~~i~p~-~Hl~~~vsa~liGl~D~-p 464 (858)
T COG5215 394 MHGPCE--DCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA----MIISPC-GHLVLEVSASLIGLMDC-P 464 (858)
T ss_pred hcCccH--HHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH----HhcCcc-ccccHHHHHHHhhhhcc-c
Confidence 887752 4444433 4667888888887777889999999999886432 334443 4444433322211 11 2
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHH--HhcCcHHHHHHHhhhhccccccCCccchhhhHh---HHHHHHHHhccCCCChHH
Q 003530 519 KEQAAAVGLLAELPERDLGLTRQM--LDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEG---LLSVLARVTFVLSDEPDA 593 (813)
Q Consensus 519 ~~~~~a~~~L~~L~~~~~~~~~~l--~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~---a~~aL~~~~~~l~~~~~~ 593 (813)
..-.++.|..-||..+-.+..+.. .=....+.|++.|-.. .... -......-. +.+.|..++ ++.
T Consensus 465 ~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~---t~~~-~Ne~n~R~s~fsaLgtli~~~------~d~ 534 (858)
T COG5215 465 FRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKG---TELA-LNESNLRVSLFSALGTLILIC------PDA 534 (858)
T ss_pred hHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHH---HHhh-ccchhHHHHHHHHHHHHHhhc------chh
Confidence 555667777777765433332110 0012334444433221 1110 011222223 333333333 221
Q ss_pred H-HHHH---H------cCchHHHHHHHhcC---CchHHHHHHHHHHhhhccccccccCCCCCCCCCCCcccccccccCCC
Q 003530 594 I-ALCC---E------HNLAALFIELLQSN---GLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPV 660 (813)
Q Consensus 594 ~-~~~~---~------~~~i~~L~~lL~~~---~~~~vk~~Aa~aL~~ls~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 660 (813)
. ..+. + ...|.++-+.+... ..++++.+-...|..+.+..+.-
T Consensus 535 V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~------------------------ 590 (858)
T COG5215 535 VSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRD------------------------ 590 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC------------------------
Confidence 1 1111 0 01122222222222 01234444444444433221100
Q ss_pred CCCCCcccccccCccccchhhhccchHHHHHhhccCchh----HHHHHHHHHHhhhhcCcchhhHHHHHHhhcCcHHHHH
Q 003530 661 ITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEK----VVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILD 736 (813)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~l~~~gai~~Lv~lL~~~~~~----v~~~A~~AL~~L~~~~~~~~~~~~~i~~~~~v~~L~~ 736 (813)
..-++-.-.+.++++|++.++. =+..|+.||.+-+... + .-.-..-+|.|.+
T Consensus 591 -----------------ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~--F-----e~y~~~fiPyl~~ 646 (858)
T COG5215 591 -----------------IEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEER--F-----EQYASKFIPYLTR 646 (858)
T ss_pred -----------------cccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHH--H-----HHHHhhhhHHHHH
Confidence 0012333567788899887553 2345555665533221 2 2233456788888
Q ss_pred HHhhcCChHHHHHHHHHHHHHHcc-hhhhhhhcCCCcchHHHHHHhhhcC--chhHHHHHH
Q 003530 737 VLLEKRTENLQRRAVWVVERILRT-DDIAYEVSGDPNVSTALVDAFQHAD--YRTRQIAER 794 (813)
Q Consensus 737 ll~~~~~~~~~~~a~~aL~~i~~~-~~~~~~~~~~~~~~~~Lv~~l~~~~--~~~~~~Aa~ 794 (813)
-| ...+.-+-..|+..++.+.+. .+.-..|+. .+-..||+.+++.. .++|.....
T Consensus 647 al-n~~d~~v~~~avglvgdlantl~~df~~y~d--~~ms~LvQ~lss~~~~R~lKPaiLS 704 (858)
T COG5215 647 AL-NCTDRFVLNSAVGLVGDLANTLGTDFNIYAD--VLMSSLVQCLSSEATHRDLKPAILS 704 (858)
T ss_pred Hh-cchhHHHHHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHhcChhhccccchHHHH
Confidence 88 477778888999999998855 222223332 12357888887765 344444333
No 128
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.017 Score=61.01 Aligned_cols=268 Identities=14% Similarity=0.164 Sum_probs=175.8
Q ss_pred cHHHHHHHHHHHhhcCCcccccccccCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-----Ccc----hhhhhhcCCCH
Q 003530 124 DIMPALKYVQYFCQSSRSNKHVVHNSELIPMIIDMLKSSSRKVRCTALETLRIVVEE-----DDD----NKEILGQGDTV 194 (813)
Q Consensus 124 ~~~~al~~l~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~-----~~~----~~~~i~~~g~i 194 (813)
+....+..+..++.- |.--..+.+.++|+.|+.+|.+.+.++....+..|..|.-. +++ --..+++.+.+
T Consensus 100 dLhd~IQ~mhvlAt~-PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vl 178 (536)
T KOG2734|consen 100 DLHDIIQEMHVLATM-PDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVL 178 (536)
T ss_pred cHHHHHHHHHhhhcC-hHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHH
Confidence 333455555555433 33334567889999999999999999999999999888643 222 23467778889
Q ss_pred HHHHHHhccCcHH------HHHHHHHHHHHhhcC-chhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhcc-C
Q 003530 195 RTIVKFLSHELSR------EREEAVSLLYELSKS-EALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEK-C 266 (813)
Q Consensus 195 ~~Lv~lL~~~~~~------~~~~a~~~L~~ls~~-~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~-~ 266 (813)
+.|++-+..=|.. ...++...+-|+... ++....++. .|.+.-|+.-+.....-.....+|..+|.-+-. +
T Consensus 179 aLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e-~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s 257 (536)
T KOG2734|consen 179 ALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVE-QGLLSWLLKRLKGKAAFDANKQYASEILAILLQNS 257 (536)
T ss_pred HHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHH-hhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccC
Confidence 9998877543322 356667777777654 456666654 577777776554333445567788888887744 5
Q ss_pred CccHHHHHHcCChHHHHHHHcc---CC------HHHHHHHHHHHHHhcCCchhHHHHHhh-hHHHHHHHHhcCCHHHHHH
Q 003530 267 ENNVRQMAENGRLQPLLTQILE---GP------QETKLSLAAFLGDLALNSDVKVLVART-VGSCLINIMKSGNMQAREA 336 (813)
Q Consensus 267 ~~~~~~i~~~G~i~~Lv~lL~~---~~------~~~~~~a~~~L~~L~~~~~~~~~i~~~-gi~~Lv~lL~~~~~~~~~~ 336 (813)
++|+.....-.+|+.+++-+.- .+ .+..++.-..|..+...+.++..+... |+....=+++. ....+..
T Consensus 258 ~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~S 336 (536)
T KOG2734|consen 258 DENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGS 336 (536)
T ss_pred chhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhh
Confidence 5588888888999999877742 12 234444445555555567888766654 66555555554 4556788
Q ss_pred HHHHHHHhhCCc---ccHHHHHHcCChHHHHHHHhccCC-----CCCChhHHHHHHHHHHHHHhcC
Q 003530 337 ALKALNQISSCE---PSAKVLIHAGILPPLVKDLFTVGS-----NHLPMRLKEVSATILANVVNSG 394 (813)
Q Consensus 337 a~~aL~~Ls~~~---~~~~~i~~~g~i~~Lv~lL~~~~~-----~~~~~~~~~~a~~~L~nL~~~~ 394 (813)
+.++|-.....+ +++..+++.+|+..+..+....+. .-...+.-+..+.+|+.+-.+.
T Consensus 337 alkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 337 ALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL 402 (536)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence 999998888765 678889999999887776652110 0112445566667777665543
No 129
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=3.7e-05 Score=75.01 Aligned_cols=52 Identities=19% Similarity=0.285 Sum_probs=43.3
Q ss_pred cCCCCCceecccccccCCCceecCCCchhcHHHHHH-HHHHhhhCCCCCCCCCCCcCC
Q 003530 26 IEPIYDAFVCPLTKQVMRDPVTLENGQTFEREAIEK-WFKECRENGRKPVCPLTQKEL 82 (813)
Q Consensus 26 ~~~~~~~~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~-~~~~~~~~~~~~~CP~t~~~l 82 (813)
+..+..+|.|+||.+.+.+|+-++|||.||-.||-. |..+ .. -+||.|++..
T Consensus 209 pfip~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~----k~-~~CplCRak~ 261 (271)
T COG5574 209 PFIPLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKK----KY-EFCPLCRAKV 261 (271)
T ss_pred CcccccccceeeeecccCCcccccccchhhHHHHHHHHHhh----cc-ccCchhhhhc
Confidence 333457899999999999999999999999999999 8775 21 4599998754
No 130
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.58 E-value=0.004 Score=67.91 Aligned_cols=261 Identities=18% Similarity=0.156 Sum_probs=161.3
Q ss_pred CHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhH--hHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccH
Q 003530 193 TVRTIVKFLSHELSREREEAVSLLYELSKSEALC--EKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNV 270 (813)
Q Consensus 193 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~--~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~ 270 (813)
.|..++++|++..+.+|..|+.+...|+.--.++ .+.....|. .|..-|. .+.+++.-....+++.+......+
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lg--e~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLG--EDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcC--cccHHHHHHHHHHHHHHhhhhccc
Confidence 3556678899999999999999988887533222 111122232 3555666 678888887777777663322111
Q ss_pred -HHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhHHHHHhhh-H-HHHHHHHhcCCHHHHHHHHHHHHHhhCC
Q 003530 271 -RQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTV-G-SCLINIMKSGNMQAREAALKALNQISSC 347 (813)
Q Consensus 271 -~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g-i-~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~ 347 (813)
.+=--.|.+|.|...|++....+..+....++.++.+.....-..+.- | -.|+++|.+-+.+++++|...++.++.-
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 111135899999999999999999999999999998543333344432 3 5789999999999999999999988863
Q ss_pred cccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCCh
Q 003530 348 EPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGP 427 (813)
Q Consensus 348 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~ 427 (813)
-.- .+++..|+.-|+... ...+....-+++-.+..+. --.++|.|+.--..+..
T Consensus 761 iGP------qdvL~~LlnnLkvqe-----Rq~RvctsvaI~iVae~cg---------------pfsVlP~lm~dY~TPe~ 814 (975)
T COG5181 761 IGP------QDVLDILLNNLKVQE-----RQQRVCTSVAISIVAEYCG---------------PFSVLPTLMSDYETPEA 814 (975)
T ss_pred cCH------HHHHHHHHhcchHHH-----HHhhhhhhhhhhhhHhhcC---------------chhhHHHHHhcccCchh
Confidence 111 112333444343310 1111111112221121111 12467777766666777
Q ss_pred HHHHHHHHHHHHcccCC-CchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCC
Q 003530 428 TIECKLLQVLVGLTSSP-TTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPH 488 (813)
Q Consensus 428 ~~~~~a~~~L~~L~~~~-~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~ 488 (813)
.+|.-.+++++.+-..- ....+..-.| .+.|-..|.+.++-.|..|...+..|+-+
T Consensus 815 nVQnGvLkam~fmFeyig~~s~dYvy~i-----tPlleDAltDrD~vhRqta~nvI~Hl~Ln 871 (975)
T COG5181 815 NVQNGVLKAMCFMFEYIGQASLDYVYSI-----TPLLEDALTDRDPVHRQTAMNVIRHLVLN 871 (975)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHhhhcccchHHHHHHHHHHHHHhcC
Confidence 88887888877665431 1011122211 44555677777888899999999998843
No 131
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.58 E-value=0.06 Score=62.85 Aligned_cols=491 Identities=14% Similarity=0.125 Sum_probs=265.6
Q ss_pred CHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcH-HHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHH
Q 003530 163 SRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELS-REREEAVSLLYELSKSEALCEKIGSINGAILILVG 241 (813)
Q Consensus 163 ~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ 241 (813)
...++.+++..+...+........ ..- .-+++..|..++. ..|..+......+...-.. ..+- ....+..-.
T Consensus 172 et~vr~k~ve~l~~v~~~~~~~~~---~~~-lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~-~~vk--~elr~~~~~ 244 (759)
T KOG0211|consen 172 ETGVREKAVESLLKVAVGLPKEKL---REH-LVPLLKRLATGDWFQSRLSACGLFGKLYVSLPD-DAVK--RELRPIVQS 244 (759)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHH---HHH-HHHHHHHccchhhhhcchhhhhhhHHhccCCCh-HHHH--HHHHHHHHh
Confidence 445688888888887665433222 111 2223333333322 2245555555555433221 2221 122233333
Q ss_pred hcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhHHHHHhhhHHH
Q 003530 242 MTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSC 321 (813)
Q Consensus 242 lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~gi~~ 321 (813)
+-. +..+.++..++.-+.+++..-.. .....+.++.++++..+....+++.|...+.++...-+..........+.
T Consensus 245 lc~--d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~ 320 (759)
T KOG0211|consen 245 LCQ--DDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTES 320 (759)
T ss_pred hcc--ccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHH
Confidence 444 67788888888888887654333 77788999999999999999999999888888765211111344445688
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccc
Q 003530 322 LINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSIT 401 (813)
Q Consensus 322 Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 401 (813)
+++...+++..++.......+.|+..-+. ....---+++...+++... .+.+...+.-...++........
T Consensus 321 l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~-----~e~r~a~a~~~~~l~~~l~~~~~-- 391 (759)
T KOG0211|consen 321 LVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEE-----WEVRYAIAKKVQKLACYLNASCY-- 391 (759)
T ss_pred HHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchh-----hhhhHHhhcchHHHhhhcCcccc--
Confidence 89998888888888888887777653111 1112234566777776532 34444433333333332211000
Q ss_pred cCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHH
Q 003530 402 VGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIEL 481 (813)
Q Consensus 402 ~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~ 481 (813)
..+.....+|.+-.+..+.++.++...+.....+.--..- .... ..-.+.+...+++..++++.+....
T Consensus 392 -----~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k-~~ti-----~~llp~~~~~l~de~~~V~lnli~~ 460 (759)
T KOG0211|consen 392 -----PNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK-ERTI-----SELLPLLIGNLKDEDPIVRLNLIDK 460 (759)
T ss_pred -----cccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc-CcCc-----cccChhhhhhcchhhHHHHHhhHHH
Confidence 0233344567777777777888887776666655432110 0000 1235566667777888888877754
Q ss_pred HHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhhhccc
Q 003530 482 IQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLG 561 (813)
Q Consensus 482 L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~ 561 (813)
+..+-......-...+.. ..++.++.+-.... ..++.+....+..++.... ..+++...-+.+..-+.+
T Consensus 461 ls~~~~v~~v~g~~~~s~--slLp~i~el~~d~~--wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d---- 529 (759)
T KOG0211|consen 461 LSLLEEVNDVIGISTVSN--SLLPAIVELAEDLL--WRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPD---- 529 (759)
T ss_pred HHHHHhccCcccchhhhh--hhhhhhhhhccchh--HHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhh----
Confidence 433221110000011111 24555555554443 3555555555444433111 112221111111111111
Q ss_pred cccCCccchhhhHhHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHHhcCCchHHHHHHHHHHhhhccccccccCCCC
Q 003530 562 ETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPE 641 (813)
Q Consensus 562 ~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~ls~~~~~l~~~~~ 641 (813)
..-.+.++++..+..++.....++..+ ..+|.+......+ +...|...+.++.-++.--
T Consensus 530 ------~v~~Ir~~aa~~l~~l~~~~G~~w~~~------~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~-------- 588 (759)
T KOG0211|consen 530 ------HVYSIREAAARNLPALVETFGSEWARL------EEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVL-------- 588 (759)
T ss_pred ------hHHHHHHHHHHHhHHHHHHhCcchhHH------HhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHh--------
Confidence 123456666666655553311223222 3456555555555 5677777777776444210
Q ss_pred CCCCCCCcccccccccCCCCCCCCcccccccCccccchhhhccchHHHHHhhccCchhHHHHHHHHHHhhhhcCcchhhH
Q 003530 642 LPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQG 721 (813)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~ 721 (813)
+ .. +....-++++.++..++.+.||-.++..|..+..--.
T Consensus 589 ---------------------------g-----~e---i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~----- 628 (759)
T KOG0211|consen 589 ---------------------------G-----QE---ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLD----- 628 (759)
T ss_pred ---------------------------c-----cH---HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcc-----
Confidence 0 01 1235567888999999999999999999988874311
Q ss_pred HHHHHhhcCcHHHHHHHhhcCChHHHHHHHHHHHHHH
Q 003530 722 VMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERIL 758 (813)
Q Consensus 722 ~~~i~~~~~v~~L~~ll~~~~~~~~~~~a~~aL~~i~ 758 (813)
....+ +-|.++.+-|....+.+++..|.-+++.+.
T Consensus 629 -~~~~~-~~v~pll~~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 629 -ESVRD-EEVLPLLETLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred -hHHHH-HHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence 12233 334444444435777889988888887775
No 132
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.57 E-value=0.0001 Score=72.32 Aligned_cols=72 Identities=24% Similarity=0.420 Sum_probs=57.0
Q ss_pred CCCCCceecccccccCCCceec-CCCchhcHHHHHHHHHHhhhCCCCCCCCCCCc-CCCCCCCcccHhhHHHHHHHHHh
Q 003530 27 EPIYDAFVCPLTKQVMRDPVTL-ENGQTFEREAIEKWFKECRENGRKPVCPLTQK-ELRSTDLNPSIALRNTIEEWNAR 103 (813)
Q Consensus 27 ~~~~~~~~Cpi~~~~m~dpv~~-~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~-~l~~~~l~pn~~l~~~I~~~~~~ 103 (813)
.++.-.+.||+|+.++++|+-+ +|||+||..||+..+-+ . .+.||.|.. .+--..+.|+...+.-||.+...
T Consensus 269 ~~~~i~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~d----s-Df~CpnC~rkdvlld~l~pD~dk~~EvE~~lkk 342 (427)
T COG5222 269 QPPNISLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLD----S-DFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKK 342 (427)
T ss_pred CCCCccccCcchhhhhhCcccCccccchHHHHHHhhhhhh----c-cccCCCcccccchhhccCccHHHHHHHHHHHHH
Confidence 3333349999999999999986 88999999999998875 3 389999954 22235678888888888888764
No 133
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.085 Score=59.86 Aligned_cols=279 Identities=13% Similarity=0.109 Sum_probs=157.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcc
Q 003530 320 SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDS 399 (813)
Q Consensus 320 ~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~ 399 (813)
+.+=.+|++..+.+...|++++.+|.... -..+. .++..|--++.+. ...++-.|..+|-.++...+....
T Consensus 248 ~fl~s~l~~K~emV~~EaArai~~l~~~~--~r~l~--pavs~Lq~flssp-----~~~lRfaAvRtLnkvAm~~P~~v~ 318 (865)
T KOG1078|consen 248 PFLESCLRHKSEMVIYEAARAIVSLPNTN--SRELA--PAVSVLQLFLSSP-----KVALRFAAVRTLNKVAMKHPQAVT 318 (865)
T ss_pred HHHHHHHhchhHHHHHHHHHHHhhccccC--Hhhcc--hHHHHHHHHhcCc-----HHHHHHHHHHHHHHHHHhCCcccc
Confidence 44445667677888889999998887632 11111 1566666666653 478899999999999986654332
Q ss_pred cccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCCh---HHHH
Q 003530 400 ITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQN---DLRL 476 (813)
Q Consensus 400 ~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~---~v~~ 476 (813)
-.-..|-.++.+.+-.+-..|+.+|..-..... ...+ +.++..+..+=++ -+..
T Consensus 319 -------------~cN~elE~lItd~NrsIat~AITtLLKTG~e~s-----v~rL-----m~qI~~fv~disDeFKivvv 375 (865)
T KOG1078|consen 319 -------------VCNLDLESLITDSNRSIATLAITTLLKTGTESS-----VDRL-----MKQISSFVSDISDEFKIVVV 375 (865)
T ss_pred -------------ccchhHHhhhcccccchhHHHHHHHHHhcchhH-----HHHH-----HHHHHHHHHhccccceEEeH
Confidence 111223344444444455555555544333321 2212 2333334443333 4445
Q ss_pred HHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhh
Q 003530 477 ASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVK 556 (813)
Q Consensus 477 ~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~ 556 (813)
.|.+.|+..- +.. .. +.+.-|-++|.++.. -+.+.+..-++..+...+++. +.-++..|+.++.
T Consensus 376 dai~sLc~~f---p~k------~~-~~m~FL~~~Lr~eGg-~e~K~aivd~Ii~iie~~pds-----Ke~~L~~LCefIE 439 (865)
T KOG1078|consen 376 DAIRSLCLKF---PRK------HT-VMMNFLSNMLREEGG-FEFKRAIVDAIIDIIEENPDS-----KERGLEHLCEFIE 439 (865)
T ss_pred HHHHHHHhhc---cHH------HH-HHHHHHHHHHHhccC-chHHHHHHHHHHHHHHhCcch-----hhHHHHHHHHHHH
Confidence 5555555533 221 11 456677788888665 355666555555444433333 2345567777777
Q ss_pred hhccccccCCccchhhhHhHHHHHHHHhccCC--CChHHHHHHHHcCchHHHHHHHhcCCchHHHHHHHHHHhhhccccc
Q 003530 557 SIQLGETRGSRFVTPFLEGLLSVLARVTFVLS--DEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESK 634 (813)
Q Consensus 557 ~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~--~~~~~~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~ls~~~~ 634 (813)
++ ++..-+..+|..+..... .+|. .-+..+...+--. +..++..|..+|.+++.+..
T Consensus 440 Dc------------e~~~i~~rILhlLG~EgP~a~~Ps--------kyir~iyNRviLE-n~ivRaaAv~alaKfg~~~~ 498 (865)
T KOG1078|consen 440 DC------------EFTQIAVRILHLLGKEGPKAPNPS--------KYIRFIYNRVILE-NAIVRAAAVSALAKFGAQDV 498 (865)
T ss_pred hc------------cchHHHHHHHHHHhccCCCCCCcc--------hhhHHHhhhhhhh-hhhhHHHHHHHHHHHhcCCC
Confidence 63 233445555555542100 1222 1122223333334 67889999999988873322
Q ss_pred cccCCCCCCCCCCCcccccccccCCCCCCCCcccccccCccccchhhhccchHHHHHhhccCchhHHHHHHHHHHhhh
Q 003530 635 NLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVI 712 (813)
Q Consensus 635 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gai~~Lv~lL~~~~~~v~~~A~~AL~~L~ 712 (813)
.+ ..-....|-+++.+.|++||..|..+|..+.
T Consensus 499 ~l---------------------------------------------~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 499 VL---------------------------------------------LPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred Cc---------------------------------------------cccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 11 0114557889999999999999999999987
No 134
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.015 Score=64.31 Aligned_cols=293 Identities=14% Similarity=0.120 Sum_probs=182.3
Q ss_pred HHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccC
Q 003530 210 EEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEG 289 (813)
Q Consensus 210 ~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~ 289 (813)
..+......+...+..-... ..++...|+.+.. +.++.++..|+..|..|+..-+--..+ ....+++|.+.
T Consensus 176 ~~~~~~~~~lg~~~ss~~~d--~~~~~~~l~~~~~--~~D~~Vrt~A~eglL~L~eg~kL~~~~-----Y~~A~~~lsD~ 246 (823)
T KOG2259|consen 176 LLLYCFHLPLGVSPSSLTHD--REHAARGLIYLEH--DQDFRVRTHAVEGLLALSEGFKLSKAC-----YSRAVKHLSDD 246 (823)
T ss_pred HHHHHHhhhcccCCCccccc--HHHHHHHHHHHhc--CCCcchHHHHHHHHHhhcccccccHHH-----HHHHHHHhcch
Confidence 33444444554444332222 1244555778877 788999999999988886532222223 34778999999
Q ss_pred CHHHHHHHHHHHHHhcC-C------chhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHH
Q 003530 290 PQETKLSLAAFLGDLAL-N------SDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPP 362 (813)
Q Consensus 290 ~~~~~~~a~~~L~~L~~-~------~~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~ 362 (813)
+.+++..|+.+++-.+. . +.....+.+.+...+...+++.+-.++-.|+.+|+.+-.-. +.+++.-.=+.
T Consensus 247 ~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS---ee~i~QTLdKK 323 (823)
T KOG2259|consen 247 YEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS---EEIIQQTLDKK 323 (823)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhH---HHHHHHHHHHH
Confidence 99999999776665543 1 12333444455678888888888888888999888765421 12222222233
Q ss_pred HHHHHhccCCCCCChhHHHHHHHHHHHHHh-cCCCC----cccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHH
Q 003530 363 LVKDLFTVGSNHLPMRLKEVSATILANVVN-SGHDF----DSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVL 437 (813)
Q Consensus 363 Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~-~~~~~----~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L 437 (813)
++.-++.. ....+.......+.-. ....| ..-..|.+...+...|+--.+|+-|.+.-.++|+.|...+
T Consensus 324 lms~lRRk------r~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl 397 (823)
T KOG2259|consen 324 LMSRLRRK------RTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASL 397 (823)
T ss_pred Hhhhhhhh------hhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHH
Confidence 33333221 1111222222222100 00011 0111222223455677778888888877889999999999
Q ss_pred HHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCC
Q 003530 438 VGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGI 517 (813)
Q Consensus 438 ~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~ 517 (813)
+.|+.+.... .. .++..|+.++++...+||..|..+|..++.+ -.+++ ..++.+...|.+.+.
T Consensus 398 ~~La~ssP~F--A~------~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~------l~i~e--eql~~il~~L~D~s~- 460 (823)
T KOG2259|consen 398 CSLATSSPGF--AV------RALDFLVDMFNDEIEVVRLKAIFALTMISVH------LAIRE--EQLRQILESLEDRSV- 460 (823)
T ss_pred HHHHcCCCCc--HH------HHHHHHHHHhccHHHHHHHHHHHHHHHHHHH------heecH--HHHHHHHHHHHhcCH-
Confidence 9999874421 11 2478999999999999999999999998864 12333 367777888888775
Q ss_pred hHHHHHHHHHHhcCCCCCHHH
Q 003530 518 SKEQAAAVGLLAELPERDLGL 538 (813)
Q Consensus 518 ~~~~~~a~~~L~~L~~~~~~~ 538 (813)
++|.+.--+|.+.-..+.+.
T Consensus 461 -dvRe~l~elL~~~~~~d~~~ 480 (823)
T KOG2259|consen 461 -DVREALRELLKNARVSDLEC 480 (823)
T ss_pred -HHHHHHHHHHHhcCCCcHHH
Confidence 99999888888776655444
No 135
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.48 E-value=0.0001 Score=59.20 Aligned_cols=40 Identities=30% Similarity=0.719 Sum_probs=32.6
Q ss_pred ecccccccCCCc-------------eecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCC
Q 003530 34 VCPLTKQVMRDP-------------VTLENGQTFEREAIEKWFKECRENGRKPVCPLTQ 79 (813)
Q Consensus 34 ~Cpi~~~~m~dp-------------v~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~ 79 (813)
.|+||++.|.|| +..+|||.|-..||.+|+.. ..+||.|+
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~------~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ------NNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT------SSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc------CCcCCCCC
Confidence 399999999544 34589999999999999986 36999996
No 136
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.48 E-value=0.00025 Score=73.71 Aligned_cols=51 Identities=29% Similarity=0.556 Sum_probs=44.4
Q ss_pred eecccccccCCCcee-cCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCcc
Q 003530 33 FVCPLTKQVMRDPVT-LENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNP 89 (813)
Q Consensus 33 ~~Cpi~~~~m~dpv~-~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~~l~p 89 (813)
+.|.|++++-++||+ -.+||.|||+.|++|+.+ ...||+|++++...++.|
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e------~G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE------TGKDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH------cCCCCCCCCcCCHHHeee
Confidence 579999999999998 578999999999999998 357999999987666644
No 137
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.11 Score=61.22 Aligned_cols=255 Identities=12% Similarity=0.130 Sum_probs=144.8
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCc-HHHHHHHHHHHHHhhcCchhHhH
Q 003530 150 ELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHEL-SREREEAVSLLYELSKSEALCEK 228 (813)
Q Consensus 150 g~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~ls~~~~~~~~ 228 (813)
+++..|...|++.+..++..|+..++.+....+ + . ....+|...+.++.-.+ ...=..|+.+|.+|+.-.-....
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~-~-Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--P-E-LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--H-H-HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 456667777788899999999999999988765 1 2 22345677777666544 44567899999999875432222
Q ss_pred HhhhhchHHHHHHhccc------CCCCHHHHHHHHHHHHhhccC--CccHHHHHHcCChHHHHHHHccCCHHHHHHHHHH
Q 003530 229 IGSINGAILILVGMTSS------KSENLLTVEKAEKTLANLEKC--ENNVRQMAENGRLQPLLTQILEGPQETKLSLAAF 300 (813)
Q Consensus 229 i~~~~g~i~~Lv~lL~~------~s~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~ 300 (813)
.. ...+|.+++-|.- .+.-..++..|+-+++.++.. +.....+...=.-..|+..+-+.....|..|..+
T Consensus 417 ~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAA 494 (1133)
T KOG1943|consen 417 LL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAA 494 (1133)
T ss_pred HH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHH
Confidence 21 2456666655531 123356888999999888543 2211222211111122333444566677777777
Q ss_pred HHHhcCCchhHHHHHhhh-HHHHHHHHhcCC---HHHHHHHHHHHHHhhCCcccHHHHHH-cCChHHHHHHHhccCCCCC
Q 003530 301 LGDLALNSDVKVLVARTV-GSCLINIMKSGN---MQAREAALKALNQISSCEPSAKVLIH-AGILPPLVKDLFTVGSNHL 375 (813)
Q Consensus 301 L~~L~~~~~~~~~i~~~g-i~~Lv~lL~~~~---~~~~~~a~~aL~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~ 375 (813)
+..... ..| .|-=+.+...-+ -..+.++-..|. ..+.+ .|...++++-|......+=
T Consensus 495 lqE~VG---------R~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~---------~~ia~~~~y~~~~f~~L~t~Kv~HW 556 (1133)
T KOG1943|consen 495 LQENVG---------RQGNFPHGISLISTIDYFSVTNRSNCYLDLC---------VSIAEFSGYREPVFNHLLTKKVCHW 556 (1133)
T ss_pred HHHHhc---------cCCCCCCchhhhhhcchhhhhhhhhHHHHHh---------HHHHhhhhHHHHHHHHHHhcccccc
Confidence 666432 222 221122222111 112222222221 11111 3344455554443322233
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHc
Q 003530 376 PMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGL 440 (813)
Q Consensus 376 ~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L 440 (813)
+..+++.++.+|.+|+...+. ....+.+++++....+.+...+.-+..+...+
T Consensus 557 d~~irelaa~aL~~Ls~~~pk------------~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev 609 (1133)
T KOG1943|consen 557 DVKIRELAAYALHKLSLTEPK------------YLADYVLPPLLDSTLSKDASMRHGVFLAAGEV 609 (1133)
T ss_pred cHHHHHHHHHHHHHHHHhhHH------------hhcccchhhhhhhhcCCChHHhhhhHHHHHHH
Confidence 589999999999999875542 23357788998888888888776554444433
No 138
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.11 Score=59.13 Aligned_cols=279 Identities=12% Similarity=0.151 Sum_probs=163.0
Q ss_pred CCHHHHHHHhccCcHHHHHHHH-HHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccH
Q 003530 192 DTVRTIVKFLSHELSREREEAV-SLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNV 270 (813)
Q Consensus 192 g~i~~Lv~lL~~~~~~~~~~a~-~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~ 270 (813)
|.++.+-.-|.+....-|..|+ .++..+....+ ..+..+-+++... ..|.+.++-.---|.|-+......
T Consensus 13 ~ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~D-------vSslF~dvvk~~~--T~dlelKKlvyLYl~nYa~~~P~~ 83 (734)
T KOG1061|consen 13 GEIPELKSQLNSQSKEKRKDAVKKVIAYMTVGKD-------VSSLFPDVVKCMQ--TRDLELKKLVYLYLMNYAKGKPDL 83 (734)
T ss_pred hhchHHHHHhhhhhhhhHHHHHHHHHhcCccCcc-------hHhhhHHHHhhcc--cCCchHHHHHHHHHHHhhccCchH
Confidence 4455555555444444454444 34555544322 1245667777777 566666665444444443221111
Q ss_pred HHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCCccc
Q 003530 271 RQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPS 350 (813)
Q Consensus 271 ~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~ 350 (813)
..+++..+++=-.+.++..+..|.+.+..+-... +.+.-..+|.+.++++++-++..++-+..++-. -+
T Consensus 84 ----a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~-----i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~--~~ 152 (734)
T KOG1061|consen 84 ----AILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK-----ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD--ID 152 (734)
T ss_pred ----HHhhhhhhhccCCCCCHHHHHHHhhceeeEeehH-----HHHHHHHHHHHhccCCChhHHHHHHHHHHHhhc--CC
Confidence 1245566666566668888877777766654322 333346889999999999998888877776544 34
Q ss_pred HHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHH
Q 003530 351 AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIE 430 (813)
Q Consensus 351 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~ 430 (813)
.+.....|.++.|-.++.+. ++.+..+|+.+|..+.....+... .......+..++..+..-+ .
T Consensus 153 ~~~~~~~gl~~~L~~ll~D~-----~p~VVAnAlaaL~eI~e~~~~~~~--------~~l~~~~~~~lL~al~ec~---E 216 (734)
T KOG1061|consen 153 PDLVEDSGLVDALKDLLSDS-----NPMVVANALAALSEIHESHPSVNL--------LELNPQLINKLLEALNECT---E 216 (734)
T ss_pred hhhccccchhHHHHHHhcCC-----CchHHHHHHHHHHHHHHhCCCCCc--------ccccHHHHHHHHHHHHHhh---h
Confidence 55566788999999999853 489999999999999886654221 1222334444444443222 2
Q ss_pred HHHHHHHHHcccC-CCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHH
Q 003530 431 CKLLQVLVGLTSS-PTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIR 509 (813)
Q Consensus 431 ~~a~~~L~~L~~~-~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ 509 (813)
..-+.+|-.++.. +....+... .+..+...|.+.+..+...+...+..+...... +.+.+.. ..-++|+.
T Consensus 217 W~qi~IL~~l~~y~p~d~~ea~~------i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~-~~~~~~~--K~~~pl~t 287 (734)
T KOG1061|consen 217 WGQIFILDCLAEYVPKDSREAED------ICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ-VNELLFK--KVAPPLVT 287 (734)
T ss_pred hhHHHHHHHHHhcCCCCchhHHH------HHHHhhhhhccCCcceEeehHHHHHHHHHHHHH-HHHHHHH--Hhccccee
Confidence 2233344444443 221112222 256677788888888888888877776644333 2222222 24566777
Q ss_pred hhhcCC
Q 003530 510 VISENV 515 (813)
Q Consensus 510 ll~~~~ 515 (813)
++.+..
T Consensus 288 lls~~~ 293 (734)
T KOG1061|consen 288 LLSSES 293 (734)
T ss_pred eecccc
Confidence 777666
No 139
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.43 E-value=0.29 Score=53.66 Aligned_cols=248 Identities=13% Similarity=0.092 Sum_probs=119.2
Q ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccCCH-HHHHHHHHHHHHhcCCchhHHHH
Q 003530 236 ILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQ-ETKLSLAAFLGDLALNSDVKVLV 314 (813)
Q Consensus 236 i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~-~~~~~a~~~L~~L~~~~~~~~~i 314 (813)
.-.+.++.. +.|+.++...-.++..|+.-.+.... +...+++=+..+.+ .++-.|.+.|......+
T Consensus 67 ff~i~KlFQ--hkd~~Lrq~VY~aIkelS~~tedvlm-----~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~------ 133 (898)
T COG5240 67 FFAILKLFQ--HKDLYLRQCVYSAIKELSKLTEDVLM-----GTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGE------ 133 (898)
T ss_pred HHHHHHHHh--cCChHHHHHHHHHHHHHhhcchhhhH-----HHHHHHHhhccCCccccccHHHHHHHHhcCcc------
Confidence 345566676 78888888888888888754433221 22345555555543 56666666665543211
Q ss_pred HhhhHHHHHHHH----hcCCHHHHHHHHHHHHHhhCCcc--cHHHHHH-cCChHHHHHHHhccCCC----CCChhHHHHH
Q 003530 315 ARTVGSCLINIM----KSGNMQAREAALKALNQISSCEP--SAKVLIH-AGILPPLVKDLFTVGSN----HLPMRLKEVS 383 (813)
Q Consensus 315 ~~~gi~~Lv~lL----~~~~~~~~~~a~~aL~~Ls~~~~--~~~~i~~-~g~i~~Lv~lL~~~~~~----~~~~~~~~~a 383 (813)
-++..=++| -+..+..+.+|+-.=+.|-.... .+++.-+ ..++-.|-..=..++.. ..++-.+-+|
T Consensus 134 ---tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHa 210 (898)
T COG5240 134 ---TVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHA 210 (898)
T ss_pred ---hhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHH
Confidence 122222222 23445555555555455544322 2222221 12222222211111110 2234566777
Q ss_pred HHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHH-----HHHHHHHHcccCCCchHHHHHHHHhcC
Q 003530 384 ATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIEC-----KLLQVLVGLTSSPTTVLSVVSAIKSSG 458 (813)
Q Consensus 384 ~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~-----~a~~~L~~L~~~~~~~~~~~~~i~~~g 458 (813)
++.|..+-+++. -+.-.|++++.... .++- -.+++...+-.... ..+..+
T Consensus 211 lGlLyq~kr~dk-----------------ma~lklv~hf~~n~-smknq~a~V~lvr~~~~ll~~n~---q~~~q~---- 265 (898)
T COG5240 211 LGLLYQSKRTDK-----------------MAQLKLVEHFRGNA-SMKNQLAGVLLVRATVELLKENS---QALLQL---- 265 (898)
T ss_pred HHHHHHHhcccH-----------------HHHHHHHHHhhccc-ccccchhheehHHHHHHHHHhCh---HHHHHH----
Confidence 777776644321 12233444443222 1111 11222222222221 111111
Q ss_pred CHHHHHHhhhCCChHHHHHHHHHHHHhC-CCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCC
Q 003530 459 ATISLVQFVEAPQNDLRLASIELIQNLS-PHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPE 533 (813)
Q Consensus 459 ~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls-~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~ 533 (813)
.+.|-..|.+..+-+...++++++.++ ++.+.+..+ ..+..|-.+|.++.. ..|-.|+.+|..|+.
T Consensus 266 -rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~------~~vs~L~~fL~s~rv--~~rFsA~Riln~lam 332 (898)
T COG5240 266 -RPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVD------QTVSSLRTFLKSTRV--VLRFSAMRILNQLAM 332 (898)
T ss_pred -HHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHH------HHHHHHHHHHhcchH--HHHHHHHHHHHHHHh
Confidence 233444555556677777888887777 332333221 245667777777774 777788888877653
No 140
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.002 Score=69.18 Aligned_cols=194 Identities=12% Similarity=0.028 Sum_probs=138.2
Q ss_pred HHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCc-hhHhHHhhhhchHHHHHHhcccCCCCH
Q 003530 172 ETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSE-ALCEKIGSINGAILILVGMTSSKSENL 250 (813)
Q Consensus 172 ~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~s~~~ 250 (813)
..|..++..-.--|..+.+...++.|+++|++++..+.--+...++|....- ..+..+. +.|.|..|+.++. +.|.
T Consensus 411 l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL-~~~iIdvl~~~v~--sKDd 487 (743)
T COG5369 411 LFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFL-EKSIIDVLVNLVM--SKDD 487 (743)
T ss_pred HHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHH-HhhHHHHHHHHhh--cchh
Confidence 3444443322234566777889999999999977666677778888886543 3444454 5699999999999 7788
Q ss_pred HHHHHHHHHHHhhccCCcc--HHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCch----hHHHHHhh-----hH
Q 003530 251 LTVEKAEKTLANLEKCENN--VRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSD----VKVLVART-----VG 319 (813)
Q Consensus 251 ~~~~~a~~~L~~L~~~~~~--~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~----~~~~i~~~-----gi 319 (813)
.++.+..+.|+++-.+.++ +-+....-++..++.+.+++.-.++..+..+|.|+..+.. .+...-.. -.
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylf 567 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLF 567 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHH
Confidence 9999999999999665443 4455666778999999999999999999999999987321 22221111 13
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHH--cCChHHHHHHHh
Q 003530 320 SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIH--AGILPPLVKDLF 368 (813)
Q Consensus 320 ~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~ 368 (813)
..|++.+.+.++-.....+-.|.+++.++++.+.++. ...+..+-++|.
T Consensus 568 k~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~ 618 (743)
T COG5369 568 KRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILD 618 (743)
T ss_pred HHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHH
Confidence 6777888888887777778889998887777665542 334444444443
No 141
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.049 Score=57.70 Aligned_cols=221 Identities=16% Similarity=0.135 Sum_probs=159.7
Q ss_pred HHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCc------hhH----hHHhhhhchHHHH
Q 003530 170 ALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSE------ALC----EKIGSINGAILIL 239 (813)
Q Consensus 170 al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~------~~~----~~i~~~~g~i~~L 239 (813)
.++-+..++.. ++-.-.+++.++|+.|+.+|.+.+.++....+.+|..|+..+ +.. +.++ ..+.++.|
T Consensus 104 ~IQ~mhvlAt~-PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLv-dg~vlaLL 181 (536)
T KOG2734|consen 104 IIQEMHVLATM-PDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALV-DGQVLALL 181 (536)
T ss_pred HHHHHHhhhcC-hHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHH-hccHHHHH
Confidence 44555555554 466677889999999999999999999999999999998643 222 3333 45788888
Q ss_pred HHhcccCC----CCHHHHHHHHHHHHhhc-cCCccHHHHHHcCChHHHHHHHccC--CHHHHHHHHHHHHHhcCCc-hhH
Q 003530 240 VGMTSSKS----ENLLTVEKAEKTLANLE-KCENNVRQMAENGRLQPLLTQILEG--PQETKLSLAAFLGDLALNS-DVK 311 (813)
Q Consensus 240 v~lL~~~s----~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~G~i~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~-~~~ 311 (813)
+.-+.+-+ +...-..++...+.|+. ..+..+..+++.|.+.-|++.+... -..-+..+..+|.-+..+. +++
T Consensus 182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~ 261 (536)
T KOG2734|consen 182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENR 261 (536)
T ss_pred HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhh
Confidence 88776321 12234566777788885 4566788889889999988877644 3345677888888887754 477
Q ss_pred HHHHhh-hHHHHHHHHh---cC------CHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHH
Q 003530 312 VLVART-VGSCLINIMK---SG------NMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKE 381 (813)
Q Consensus 312 ~~i~~~-gi~~Lv~lL~---~~------~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~ 381 (813)
...... |+..+++-+. .. ..+..++-..+|..+-..++|+..++...|+....-+++.. ...+.
T Consensus 262 ~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~K------k~sr~ 335 (536)
T KOG2734|consen 262 KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREK------KVSRG 335 (536)
T ss_pred hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHH------HHhhh
Confidence 767664 7877777552 11 23567777788888778899999999999998877777753 45677
Q ss_pred HHHHHHHHHHhcCCCCc
Q 003530 382 VSATILANVVNSGHDFD 398 (813)
Q Consensus 382 ~a~~~L~nL~~~~~~~~ 398 (813)
.++.+|-....++++..
T Consensus 336 SalkvLd~am~g~~gt~ 352 (536)
T KOG2734|consen 336 SALKVLDHAMFGPEGTP 352 (536)
T ss_pred hHHHHHHHHHhCCCchH
Confidence 78889988877776544
No 142
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=3.8e-05 Score=77.73 Aligned_cols=69 Identities=22% Similarity=0.313 Sum_probs=55.1
Q ss_pred CCCCceecccccccCCCcee-cCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCC-CCCcccHhhHHHHHHHH
Q 003530 28 PIYDAFVCPLTKQVMRDPVT-LENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRS-TDLNPSIALRNTIEEWN 101 (813)
Q Consensus 28 ~~~~~~~Cpi~~~~m~dpv~-~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~-~~l~pn~~l~~~I~~~~ 101 (813)
....+|.||||+.+++-.++ -.|+|.||+.||-.-+.. |. ..||.|++.+.. ..|.++..+-.+|.+..
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~----gn-~ecptcRk~l~SkrsLr~Dp~fdaLis~i~ 109 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRS----GN-NECPTCRKKLVSKRSLRIDPNFDALISKIY 109 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh----cC-CCCchHHhhccccccCCCCccHHHHHHHHh
Confidence 34567999999999999887 489999999999999986 65 899999998754 56777666666666543
No 143
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.015 Score=65.79 Aligned_cols=336 Identities=15% Similarity=0.178 Sum_probs=183.2
Q ss_pred cCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhH
Q 003530 149 SELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEK 228 (813)
Q Consensus 149 ~g~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~ 228 (813)
.+++..+++=..+.++.+|..|++.++.+-.+. +-.-...++.+.++++++.+|..++....++-..+ .+
T Consensus 85 ~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~-------i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~--~~- 154 (734)
T KOG1061|consen 85 ILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK-------ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID--PD- 154 (734)
T ss_pred HhhhhhhhccCCCCCHHHHHHHhhceeeEeehH-------HHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC--hh-
Confidence 345666666567788999988888777664322 11235788999999999999998888887775432 22
Q ss_pred HhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCcc--HHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 003530 229 IGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENN--VRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL 306 (813)
Q Consensus 229 i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~--~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 306 (813)
++...|.++.|..++. ++++.+..+|+.+|..+...+.+ ...+ ..-.+..++..|...++-.+......+.+-.-
T Consensus 155 ~~~~~gl~~~L~~ll~--D~~p~VVAnAlaaL~eI~e~~~~~~~~~l-~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p 231 (734)
T KOG1061|consen 155 LVEDSGLVDALKDLLS--DSNPMVVANALAALSEIHESHPSVNLLEL-NPQLINKLLEALNECTEWGQIFILDCLAEYVP 231 (734)
T ss_pred hccccchhHHHHHHhc--CCCchHHHHHHHHHHHHHHhCCCCCcccc-cHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCC
Confidence 3345799999999999 89999999999999998543322 1111 11233445555555555555544444444333
Q ss_pred Cch-hHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccC--------------
Q 003530 307 NSD-VKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVG-------------- 371 (813)
Q Consensus 307 ~~~-~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~-------------- 371 (813)
.++ ....| +..+...|.+.+..+.-.+..++.++..........+-...-++|+.++.+.+
T Consensus 232 ~d~~ea~~i----~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil 307 (734)
T KOG1061|consen 232 KDSREAEDI----CERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLIL 307 (734)
T ss_pred CCchhHHHH----HHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHH
Confidence 222 11111 12233334444445555555555555443222222222223444554444321
Q ss_pred ----------------CCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHH
Q 003530 372 ----------------SNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQ 435 (813)
Q Consensus 372 ----------------~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~ 435 (813)
....+.-+|..=..++..++.... + ..++.-|.+.-..-+.+.-+++++
T Consensus 308 ~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~n-------------l--~qvl~El~eYatevD~~fvrkaIr 372 (734)
T KOG1061|consen 308 QKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDAN-------------L--AQVLAELKEYATEVDVDFVRKAVR 372 (734)
T ss_pred HhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhH-------------H--HHHHHHHHHhhhhhCHHHHHHHHH
Confidence 000112222222222222222100 0 012222222223346777788899
Q ss_pred HHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCC
Q 003530 436 VLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENV 515 (813)
Q Consensus 436 ~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~ 515 (813)
++.+++..-. ...+++..|+++++.....+...++..++.+-+..++.. +. .+..|..-+.+=+
T Consensus 373 aig~~aik~e---------~~~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~-~~------vv~~l~~~~~sl~ 436 (734)
T KOG1061|consen 373 AIGRLAIKAE---------QSNDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY-ES------VVAILCENLDSLQ 436 (734)
T ss_pred Hhhhhhhhhh---------hhhhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch-hh------hhhhhcccccccC
Confidence 9988876532 115789999999998888777777777777664333321 11 1122222222222
Q ss_pred CChHHHHHHHHHHhcCCC
Q 003530 516 GISKEQAAAVGLLAELPE 533 (813)
Q Consensus 516 ~~~~~~~~a~~~L~~L~~ 533 (813)
. .+.|.+-.|+|+.-+.
T Consensus 437 e-peak~amiWilg~y~~ 453 (734)
T KOG1061|consen 437 E-PEAKAALIWILGEYAE 453 (734)
T ss_pred C-hHHHHHHHHHHhhhhh
Confidence 2 4777777888876554
No 144
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.35 E-value=0.00013 Score=79.18 Aligned_cols=71 Identities=25% Similarity=0.507 Sum_probs=55.9
Q ss_pred cCCCCCceecccccccCCCcee-cCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCcc-cHhhHHHHHHHHH
Q 003530 26 IEPIYDAFVCPLTKQVMRDPVT-LENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNP-SIALRNTIEEWNA 102 (813)
Q Consensus 26 ~~~~~~~~~Cpi~~~~m~dpv~-~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~~l~p-n~~l~~~I~~~~~ 102 (813)
+.++.+++.||+|..++.||+. +.|||.||+.||.+|... ...||.|...+......+ ....++.+..|..
T Consensus 15 ~~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~------~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i 87 (391)
T KOG0297|consen 15 GRPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN------HQKCPVCRQELTQAEELPVPRALRRELLKLPI 87 (391)
T ss_pred CCCCcccccCccccccccCCCCCCCCCCcccccccchhhcc------CcCCcccccccchhhccCchHHHHHHHHhccc
Confidence 4556778999999999999999 599999999999999985 378999977665444333 3456777777643
No 145
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.00013 Score=77.90 Aligned_cols=72 Identities=24% Similarity=0.398 Sum_probs=57.5
Q ss_pred cCCCCCceecccccccCCCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCC-----CCcccHhhHHHHHHH
Q 003530 26 IEPIYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRST-----DLNPSIALRNTIEEW 100 (813)
Q Consensus 26 ~~~~~~~~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~-----~l~pn~~l~~~I~~~ 100 (813)
+.....+|-|-+|...+.+||++||||+||+.||.+..+. ...||.|+..+.+. ...+|+.+..+|..|
T Consensus 78 ~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~------~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F 151 (398)
T KOG4159|consen 78 PEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ------ETECPLCRDELVELPALEQALSLNRLLCKLITKF 151 (398)
T ss_pred CccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc------CCCCcccccccccchHHHHHHHHHHHHHHHHHHh
Confidence 4455788999999999999999999999999999996654 47899999887642 123466667777777
Q ss_pred HHh
Q 003530 101 NAR 103 (813)
Q Consensus 101 ~~~ 103 (813)
+..
T Consensus 152 ~~~ 154 (398)
T KOG4159|consen 152 LEG 154 (398)
T ss_pred hhh
Confidence 655
No 146
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.34 E-value=0.012 Score=65.55 Aligned_cols=272 Identities=14% Similarity=0.111 Sum_probs=159.1
Q ss_pred ccccccccCcHHHHHHHh----------cCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccC-----cH
Q 003530 142 NKHVVHNSELIPMIIDML----------KSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHE-----LS 206 (813)
Q Consensus 142 ~r~~i~~~g~i~~Lv~lL----------~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-----~~ 206 (813)
+-..+....++..|.++- ...+..+...|+++|+|+...++..|....+.|..+.++..|+.. +.
T Consensus 14 ~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~ 93 (446)
T PF10165_consen 14 GLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPS 93 (446)
T ss_pred cchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCCh
Confidence 344444444555555543 345789999999999999999999999999999999999999877 67
Q ss_pred HHHHHHHHHHHHhhc-CchhHhHHhhhhchHHHHHHhccc--------CC-------CCHHHHHHHHHHHHhhccCCccH
Q 003530 207 REREEAVSLLYELSK-SEALCEKIGSINGAILILVGMTSS--------KS-------ENLLTVEKAEKTLANLEKCENNV 270 (813)
Q Consensus 207 ~~~~~a~~~L~~ls~-~~~~~~~i~~~~g~i~~Lv~lL~~--------~s-------~~~~~~~~a~~~L~~L~~~~~~~ 270 (813)
+..--..++|.-++. ..+.+..+..+.+++..|+..|.. .. .+......+.++++|+..+....
T Consensus 94 d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~ 173 (446)
T PF10165_consen 94 DVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKS 173 (446)
T ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcc
Confidence 777788888887764 557787888777888888876642 01 24556778888999985433222
Q ss_pred HHHHHcCChHHHHHHHccC---------CHHHHHHHHHHHHHhcCCc-hh-------HHHHHhh-----hHHHHHHHHhc
Q 003530 271 RQMAENGRLQPLLTQILEG---------PQETKLSLAAFLGDLALNS-DV-------KVLVART-----VGSCLINIMKS 328 (813)
Q Consensus 271 ~~i~~~G~i~~Lv~lL~~~---------~~~~~~~a~~~L~~L~~~~-~~-------~~~i~~~-----gi~~Lv~lL~~ 328 (813)
..-...+.++.|+.+|..- .......++.+|.++-... .. ...+.-. .+..|+++|..
T Consensus 174 ~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~ 253 (446)
T PF10165_consen 174 VPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDK 253 (446)
T ss_pred cchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHH
Confidence 2112234555555554321 2355666777777763211 11 0000000 13455555532
Q ss_pred CCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCC-CCcccccCCCCc
Q 003530 329 GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGH-DFDSITVGPDNQ 407 (813)
Q Consensus 329 ~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~-~~~~~~~~~~~~ 407 (813)
. |....... . ...+.+++.+|..... ....++ ..|....-.+. ++.. .
T Consensus 254 ~--------------l~~~~~~~---l-~~~l~PlL~lL~~~~~--~~~~~R----k~lr~~lLP~~~Dr~~-~------ 302 (446)
T PF10165_consen 254 R--------------LDKYEALK---L-DELLTPLLTLLTRLAR--AAREVR----KYLRARLLPPDKDRKK-P------ 302 (446)
T ss_pred H--------------HHhcCccc---c-hhhHhhHHHHHHHHHH--hcHHHH----HHHHHHhCCChhhccc-C------
Confidence 0 11111000 1 2234555555543220 012222 22222111111 1110 0
Q ss_pred cccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCC
Q 003530 408 TLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSP 444 (813)
Q Consensus 408 ~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 444 (813)
.-.....-..|++++.+..+.++..+...|+.||...
T Consensus 303 ~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 303 PEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred CCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence 0112345678999999888999999999999999763
No 147
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.33 E-value=0.013 Score=57.91 Aligned_cols=255 Identities=15% Similarity=0.177 Sum_probs=155.1
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHH
Q 003530 152 IPMIIDMLKSS--SRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKI 229 (813)
Q Consensus 152 i~~Lv~lL~s~--~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i 229 (813)
+..+.+.|... ...-+.+|+..|+++... +.+..+.+...+++...+.+.+-+|...
T Consensus 5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~-----------~~i~~i~ka~~d~s~llkhe~ay~LgQ~---------- 63 (289)
T KOG0567|consen 5 IETIGNILVNKSQPLQNRFRALFNLRNLLGP-----------AAIKAITKAFIDDSALLKHELAYVLGQM---------- 63 (289)
T ss_pred HHHHHHHHcCccHHHHHHHHHHHhhhccCCh-----------HHHHHHHHhcccchhhhccchhhhhhhh----------
Confidence 34455555432 344566677777666442 2356666666555444455666666554
Q ss_pred hhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCch
Q 003530 230 GSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSD 309 (813)
Q Consensus 230 ~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~ 309 (813)
....+++.|+..|...+..|-++..|+.+|..+. ..+.++.+-++.+++-..+++.+..++..+-..+.
T Consensus 64 -~~~~Av~~l~~vl~desq~pmvRhEAaealga~~----------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~ 132 (289)
T KOG0567|consen 64 -QDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG----------DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDI 132 (289)
T ss_pred -ccchhhHHHHHHhcccccchHHHHHHHHHHHhhc----------chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhc
Confidence 2346889999988866677888889999987653 23455566666655666677666666666543221
Q ss_pred hHH------HH--------HhhhHHHHHHHHhcCCHHH--HHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCC
Q 003530 310 VKV------LV--------ARTVGSCLINIMKSGNMQA--REAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSN 373 (813)
Q Consensus 310 ~~~------~i--------~~~gi~~Lv~lL~~~~~~~--~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 373 (813)
... .+ ...-+..|-..|.+.+... +..|.-+|+|+.... +|..|++-+...
T Consensus 133 ~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~Ee----------aI~al~~~l~~~--- 199 (289)
T KOG0567|consen 133 IDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEE----------AINALIDGLADD--- 199 (289)
T ss_pred cccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHH----------HHHHHHHhcccc---
Confidence 100 00 0011334444343333322 445555565543321 344455555432
Q ss_pred CCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhc--CCChHHHHHHHHHHHHcccCCCchHHHH
Q 003530 374 HLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS--NTGPTIECKLLQVLVGLTSSPTTVLSVV 451 (813)
Q Consensus 374 ~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~--~~~~~~~~~a~~~L~~L~~~~~~~~~~~ 451 (813)
+.-.|-.++.+|..| .+.-.|+.|.+.|. ...|.+|..|+.+|..++..
T Consensus 200 --SalfrhEvAfVfGQl-------------------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e-------- 250 (289)
T KOG0567|consen 200 --SALFRHEVAFVFGQL-------------------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE-------- 250 (289)
T ss_pred --hHHHHHHHHHHHhhc-------------------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH--------
Confidence 467777888888654 34567888888876 46899999999999888764
Q ss_pred HHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhC
Q 003530 452 SAIKSSGATISLVQFVEAPQNDLRLASIELIQNLS 486 (813)
Q Consensus 452 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls 486 (813)
.+++.|.+++.++.+-++..+.-+|-.+-
T Consensus 251 ------~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 251 ------DCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred ------HHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 23677888888888888888877776654
No 148
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.047 Score=60.96 Aligned_cols=300 Identities=16% Similarity=0.211 Sum_probs=177.0
Q ss_pred hHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCCh--HHHHHHHHHHHHhCCCCCH
Q 003530 414 IVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQN--DLRLASIELIQNLSPHMGH 491 (813)
Q Consensus 414 ~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~--~v~~~A~~~L~~Ls~~~~~ 491 (813)
++..+..=|.+.++....-|+.++.++..- ++...+ -.-+-++|.+++. -++..|+-+|..|-+..++
T Consensus 112 vin~iknDL~srn~~fv~LAL~~I~niG~r-----e~~ea~-----~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spD 181 (938)
T KOG1077|consen 112 VINSIKNDLSSRNPTFVCLALHCIANIGSR-----EMAEAF-----ADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPD 181 (938)
T ss_pred HHHHHHhhhhcCCcHHHHHHHHHHHhhccH-----hHHHHh-----hhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcc
Confidence 345555556667777777788888777553 333333 1223366666664 5666666555555443222
Q ss_pred HHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhhhc--ccccc-----
Q 003530 492 ELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQ--LGETR----- 564 (813)
Q Consensus 492 ~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~--~~~~~----- 564 (813)
.+... ++...++.+|.+.+- .+-.++..++-.|.+.+++-- .+.++.-+.-|.... .+...
T Consensus 182 ----l~~~~-~W~~riv~LL~D~~~--gv~ta~~sLi~~lvk~~p~~y-----k~~~~~avs~L~riv~~~~t~~qdYTy 249 (938)
T KOG1077|consen 182 ----LVNPG-EWAQRIVHLLDDQHM--GVVTAATSLIEALVKKNPESY-----KTCLPLAVSRLSRIVVVVGTSLQDYTY 249 (938)
T ss_pred ----ccChh-hHHHHHHHHhCcccc--ceeeehHHHHHHHHHcCCHHH-----hhhHHHHHHHHHHHHhhcccchhhcee
Confidence 23333 678899999988773 666677777766665444321 122222222222111 11110
Q ss_pred CCccchhhhHhHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHHhcC-CchHH-HHHHHHHH----hhhccccccccC
Q 003530 565 GSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSN-GLDKV-QMVSATAL----ENLSLESKNLTK 638 (813)
Q Consensus 565 ~~~~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~~v-k~~Aa~aL----~~ls~~~~~l~~ 638 (813)
..-..+++.-.+++.|..+... +|+..+.... .+...+....+.. .+..+ +.+|-.|+ .+|+.+
T Consensus 250 y~vP~PWL~vKl~rlLq~~p~~--~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h------ 319 (938)
T KOG1077|consen 250 YFVPAPWLQVKLLRLLQIYPTP--EDPSTRARLN--EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIH------ 319 (938)
T ss_pred ecCCChHHHHHHHHHHHhCCCC--CCchHHHHHH--HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHH------
Confidence 1223678888889999888766 6777765543 2233333333311 01122 22232221 122211
Q ss_pred CCCCCCCCCCcccccccccCCCCCCCCcccccccCccccchhhhccchHHHHHhhccCchhHHHHHHHHHHhhhhcCcch
Q 003530 639 LPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDI 718 (813)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~ 718 (813)
+.+.+ . .-..++..|.++|.+.+..+|.-|++.++.|+....
T Consensus 320 ----------------~D~e~-------------------~-ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~-- 361 (938)
T KOG1077|consen 320 ----------------LDSEP-------------------E-LLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEF-- 361 (938)
T ss_pred ----------------cCCcH-------------------H-HHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccc--
Confidence 10000 0 124578899999999999999999999999997644
Q ss_pred hhHHHHHHhhcCcHHHHHHHhhcCChHHHHHHHHHHHHHHcchhhhhhhcCCCcchHHHHHHhhhcCchhHHHHHH
Q 003530 719 EQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAER 794 (813)
Q Consensus 719 ~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~~a~~aL~~i~~~~~~~~~~~~~~~~~~~Lv~~l~~~~~~~~~~Aa~ 794 (813)
...++..+ .+.++..|+..+|-+++++|+.+|-.++...+ +..+ +.-|.++|.+.++.+|+.-+-
T Consensus 362 --s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~N-ak~I------V~elLqYL~tAd~sireeivl 426 (938)
T KOG1077|consen 362 --SIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSN-AKQI------VAELLQYLETADYSIREEIVL 426 (938)
T ss_pred --hHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhh-HHHH------HHHHHHHHhhcchHHHHHHHH
Confidence 33455554 67788888657899999999999999886533 2222 356889999999988876543
No 149
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.19 Score=56.41 Aligned_cols=285 Identities=13% Similarity=0.069 Sum_probs=166.3
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhcc-CCccHHHHH
Q 003530 196 TIVKFLSHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEK-CENNVRQMA 274 (813)
Q Consensus 196 ~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~-~~~~~~~i~ 274 (813)
.+-+=|.+.++....-|+.++.++.. .+.++.+.. -|+ ++|..++...-+++.|+-+|..|-. .++- +-
T Consensus 115 ~iknDL~srn~~fv~LAL~~I~niG~-re~~ea~~~---DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl---~~ 184 (938)
T KOG1077|consen 115 SIKNDLSSRNPTFVCLALHCIANIGS-REMAEAFAD---DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL---VN 184 (938)
T ss_pred HHHhhhhcCCcHHHHHHHHHHHhhcc-HhHHHHhhh---hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc---cC
Confidence 34444566777777888888888754 234444432 233 5565434555677778777777743 2221 11
Q ss_pred HcCChHHHHHHHccCCHHHHHHHHHHHHHhcCC-c-hhHHHHHhhhHHHHHHHHh-------------cCCHHHHHHHHH
Q 003530 275 ENGRLQPLLTQILEGPQETKLSLAAFLGDLALN-S-DVKVLVARTVGSCLINIMK-------------SGNMQAREAALK 339 (813)
Q Consensus 275 ~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~-~~~~~i~~~gi~~Lv~lL~-------------~~~~~~~~~a~~ 339 (813)
..+.+++++.+|.+.+..+...+...+..|+.. + +.+..+.-. +..|-.+.. -+.+.++...++
T Consensus 185 ~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~a-vs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~r 263 (938)
T KOG1077|consen 185 PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLA-VSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLR 263 (938)
T ss_pred hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHH-HHHHHHHHhhcccchhhceeecCCChHHHHHHHH
Confidence 235778999999998888888888888888773 3 333333221 222222221 146778888888
Q ss_pred HHHHhhCC--cccHHHHHHcCChHHHHHHHhccC---CC-CC-ChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccch
Q 003530 340 ALNQISSC--EPSAKVLIHAGILPPLVKDLFTVG---SN-HL-PMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSE 412 (813)
Q Consensus 340 aL~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~---~~-~~-~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~ 412 (813)
.|.+.-.. +..+..+. ..|-++|.... .. +. ....+...+--.-+|+.+-+.-.. .+ .
T Consensus 264 lLq~~p~~~D~~~r~~l~-----evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~--------ll--~ 328 (938)
T KOG1077|consen 264 LLQIYPTPEDPSTRARLN-----EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPE--------LL--S 328 (938)
T ss_pred HHHhCCCCCCchHHHHHH-----HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHH--------HH--H
Confidence 88887442 23444433 33333443221 00 00 011111222222344444332221 12 3
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhh-CCChHHHHHHHHHHHHhCCCCCH
Q 003530 413 DIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVE-APQNDLRLASIELIQNLSPHMGH 491 (813)
Q Consensus 413 ~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~~L~~Ls~~~~~ 491 (813)
.++..|-.+|.+..+.+|.-++..++.|+......+.++. + ...++..|+ ..|..+|+.|+-+|..+++..+.
T Consensus 329 ~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~----h--~d~Ii~sLkterDvSirrravDLLY~mcD~~Na 402 (938)
T KOG1077|consen 329 RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKK----H--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNA 402 (938)
T ss_pred HHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHH----H--HHHHHHHhccccchHHHHHHHHHHHHHhchhhH
Confidence 5688888999999999999999999999988554333332 2 567778888 67779999999999999953222
Q ss_pred HHHHHHhcccccHHHHHHhhhcCCCChHHHHH
Q 003530 492 ELADALRGAVGQLGSLIRVISENVGISKEQAA 523 (813)
Q Consensus 492 ~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~ 523 (813)
+. .+..|.+-|.+.+. .+|..
T Consensus 403 ---k~------IV~elLqYL~tAd~--siree 423 (938)
T KOG1077|consen 403 ---KQ------IVAELLQYLETADY--SIREE 423 (938)
T ss_pred ---HH------HHHHHHHHHhhcch--HHHHH
Confidence 22 33446666666554 44443
No 150
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.15 E-value=0.015 Score=58.95 Aligned_cols=181 Identities=17% Similarity=0.163 Sum_probs=114.6
Q ss_pred cCCCHHHHHHHHHHHHHhhccC--cchhhhhhc--CCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHHhhhhch
Q 003530 160 KSSSRKVRCTALETLRIVVEED--DDNKEILGQ--GDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIGSINGA 235 (813)
Q Consensus 160 ~s~~~~~~~~al~~L~~L~~~~--~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~ 235 (813)
.+.+-+.+..|+..|..+..++ ......+.+ ...+..++..+.+....+...|+.++..++..-...-.-. ....
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence 5678899999999999998876 233333322 1455677777777777888999999999986543332211 2468
Q ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCch-hHHHH
Q 003530 236 ILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSD-VKVLV 314 (813)
Q Consensus 236 i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~-~~~~i 314 (813)
+|.|++.+. +.+..+++.|..+|..+..+-.....+ .++.+...+.+.++.++..++..|..+..... ....+
T Consensus 96 l~~Ll~~~~--~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 96 LPPLLKKLG--DSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHGGG-----HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHc--cccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 999999998 778889999999998886543311111 14566667778899999999999988866322 11111
Q ss_pred -----HhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCC
Q 003530 315 -----ARTVGSCLINIMKSGNMQAREAALKALNQISSC 347 (813)
Q Consensus 315 -----~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~ 347 (813)
.+.-++.+...+.+++++++..|-.+++.+...
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 122358888899999999999999999999764
No 151
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.10 E-value=0.012 Score=68.24 Aligned_cols=229 Identities=18% Similarity=0.226 Sum_probs=156.7
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHH
Q 003530 475 RLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSR 554 (813)
Q Consensus 475 ~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~l 554 (813)
|..|+.+|..+-+ .+. ++..+--+.|..|-.+++|+++.. |.|-.-+.+=+.+-.-++..+..|++.++...++..
T Consensus 487 RlRAL~LL~RFLD-lGp-WAV~LaLsVGIFPYVLKLLQS~a~--ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~v 562 (1387)
T KOG1517|consen 487 RLRALVLLARFLD-LGP-WAVDLALSVGIFPYVLKLLQSSAR--ELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQV 562 (1387)
T ss_pred HHHHHHHHHHHhc-cch-hhhhhhhccchHHHHHHHhccchH--hhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEE
Confidence 4455555555443 122 122222223889999999999986 888877777777766678888999999999999988
Q ss_pred hhhhccccccCCccchhhhHhHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHHhcCCchHHHHHHHHHHhhhccccc
Q 003530 555 VKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESK 634 (813)
Q Consensus 555 L~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~ls~~~~ 634 (813)
|.+. .....+.+..++-+|..+..+ .+.-|+...+.+.+.+=...|.++..+..+...+.+|+.|=++-.
T Consensus 563 L~~~-------~~~~~EqrtmaAFVLAviv~n---f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~ 632 (1387)
T KOG1517|consen 563 LDPS-------QAIPPEQRTMAAFVLAVIVRN---FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYD 632 (1387)
T ss_pred ecCc-------CCCCHHHHHHHHHHHHHHHcc---cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcc
Confidence 8762 112335556677788888854 566677777788888777888885368999999999988754321
Q ss_pred cccCCCCCCCCCCCcccccccccCCCCCCCCcccccccCccccchhhhccchHHHHHhhccCchhHHHHHHHHHHhhhhc
Q 003530 635 NLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDD 714 (813)
Q Consensus 635 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~ 714 (813)
...++=++.+|.+.|..+|.++-++||.+|..||++|..+
T Consensus 633 ----------------------------------------~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 633 ----------------------------------------EARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred ----------------------------------------hhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 1112234678999999999999999999999999999976
Q ss_pred Ccc-hhhHHHHH------------Hhh---cCcHHHHHHHhhcCChHHHHHHHHHHHHHH
Q 003530 715 GVD-IEQGVMVL------------CEA---QGIKPILDVLLEKRTENLQRRAVWVVERIL 758 (813)
Q Consensus 715 ~~~-~~~~~~~i------------~~~---~~v~~L~~ll~~~~~~~~~~~a~~aL~~i~ 758 (813)
..+ +......+ .|. .|...++.+++ .+++-++...+-+|..+.
T Consensus 673 ~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vs-dgsplvr~ev~v~ls~~~ 731 (1387)
T KOG1517|consen 673 GSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVS-DGSPLVRTEVVVALSHFV 731 (1387)
T ss_pred cccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHh-ccchHHHHHHHHHHHHHH
Confidence 311 11111111 111 12236777774 778878766777777765
No 152
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00026 Score=79.87 Aligned_cols=54 Identities=17% Similarity=0.441 Sum_probs=47.3
Q ss_pred CceecccccccCCCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCcc
Q 003530 31 DAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNP 89 (813)
Q Consensus 31 ~~~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~~l~p 89 (813)
.-++||.|..-.+|-|++.|||.||-.||+.-... -. ..||.|+..|...|+.|
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~et----Rq-RKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYET----RQ-RKCPKCNAAFGANDVHR 695 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHH----hc-CCCCCCCCCCCcccccc
Confidence 34899999999999999999999999999999986 33 78999999987666654
No 153
>PRK14707 hypothetical protein; Provisional
Probab=97.03 E-value=1.8 Score=54.91 Aligned_cols=595 Identities=14% Similarity=0.105 Sum_probs=274.0
Q ss_pred cccHHHHHHHHHHHhhcCCcccccccccCcHHHHHHHhc--CCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHH
Q 003530 122 ESDIMPALKYVQYFCQSSRSNKHVVHNSELIPMIIDMLK--SSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVK 199 (813)
Q Consensus 122 ~~~~~~al~~l~~l~~~~~~~r~~i~~~g~i~~Lv~lL~--s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~ 199 (813)
..++..+...|..+....+.-+..+ +..+|..++.-++ .++++.+ .|+..|.....++..-+.. .+...+...+.
T Consensus 178 ~~~c~~aa~~la~~~~~~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~-~aa~~la~~l~~~~~l~~~-~~~q~va~~lN 254 (2710)
T PRK14707 178 NPDCQAVAPRFAALVASDDRLRSAM-DAQGVATVLNALCKWPDTPDCG-NAVSALAERLADESRLRNE-LKPQELGNALN 254 (2710)
T ss_pred CchHHHHHHHHHHHhcCChhhhccc-chHHHHHHHHHHhcCCCChhHH-HHHHHHHHHHcCcHHHHHh-CChHHHHHHHH
Confidence 3455556666655555455555444 4555666666554 2445554 4444554443333233333 34445555555
Q ss_pred Hhc-cCcHHHHHHHHHHH-HHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcC
Q 003530 200 FLS-HELSREREEAVSLL-YELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENG 277 (813)
Q Consensus 200 lL~-~~~~~~~~~a~~~L-~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G 277 (813)
.|+ -.+...-.+++..| ..++.+...++.+- +-.+...+.-|+.-.+.......|..+-..|..+++-+..+- .-
T Consensus 255 ~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~--~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~-~~ 331 (2710)
T PRK14707 255 ALSKWADTPVCAAAASALAERLVDDPGLRKALD--PINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALN-AR 331 (2710)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcC--HHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccc-hH
Confidence 554 44444445555544 46666666666652 233444444444222333444444444445555544443332 22
Q ss_pred ChHHHHHHHcc-CCHHHHHHHH-HHHHHhcCCchhHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHH-hhCCcccHHH
Q 003530 278 RLQPLLTQILE-GPQETKLSLA-AFLGDLALNSDVKVLVARTVGSCLINIMKS-GNMQAREAALKALNQ-ISSCEPSAKV 353 (813)
Q Consensus 278 ~i~~Lv~lL~~-~~~~~~~~a~-~~L~~L~~~~~~~~~i~~~gi~~Lv~lL~~-~~~~~~~~a~~aL~~-Ls~~~~~~~~ 353 (813)
.+...+.-|.. ++..+...++ ..-..|+.+++-+..+...|+...+.-|+. ++......++.+|.. |..+++-++.
T Consensus 332 ~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~ 411 (2710)
T PRK14707 332 GLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKG 411 (2710)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhh
Confidence 33444444443 3444444444 444556667777888887788777777765 555555666666644 4445555555
Q ss_pred HHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhc-CCChHHHHH
Q 003530 354 LIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS-NTGPTIECK 432 (813)
Q Consensus 354 i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~-~~~~~~~~~ 432 (813)
+- .-+|..++..|.... +..+...++..|+--..++.+..+ .+.-.+ |...+.-|+ .++..+-..
T Consensus 412 ~~-~Q~van~lnalsKWP----d~~~C~~aa~~lA~~la~d~~l~~--------~~~p~~-va~~LnalSKWPd~p~c~~ 477 (2710)
T PRK14707 412 LD-PQGVSNALNALAKWP----DLPICGQAVSALAGRLAHDTELCK--------ALDPIN-VTQALDALSKWPDTPICGQ 477 (2710)
T ss_pred cc-hhhHHHHHHHhhcCC----cchhHHHHHHHHHHHHhccHHHHh--------hcChHH-HHHHHHHhhcCCCChhHHH
Confidence 44 445666667776653 466777777777655554433221 122223 444444443 444444444
Q ss_pred HHHHH-HHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHH-HHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHh
Q 003530 433 LLQVL-VGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLR-LASIELIQNLSPHMGHELADALRGAVGQLGSLIRV 510 (813)
Q Consensus 433 a~~~L-~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~-~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~l 510 (813)
++..| ..|+.++. +++.+.-.+....|-.|-+-++...- ..+.++-..+.. .......+.. ..+..+++-
T Consensus 478 aa~~La~~l~~~~~----l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~--~~~l~~~~~~--~~~~~~lna 549 (2710)
T PRK14707 478 TASALAARLAHERR----LRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVD--ELQLRKAFDA--HQVVNTLKA 549 (2710)
T ss_pred HHHHHHHHhcccHH----HHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhcc--chhhhhhhhh--HHHHHHHHh
Confidence 44544 45555433 23333322333444444444554332 222233333331 1111222222 234444544
Q ss_pred hhcCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhhhccccccCCccchhhhHhHHHHHHHHhccCCCC
Q 003530 511 ISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDE 590 (813)
Q Consensus 511 l~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~ 590 (813)
+..... ......++.-|+.+...+...+.. ++.-.|..+++.|..-. -...+..++..++..+..+
T Consensus 550 lSKwp~-s~~C~~A~~~iA~~l~~~~~~~~~-L~aq~Vs~llNaLSKWP------------~~~aC~~Aa~~LA~~l~~~ 615 (2710)
T PRK14707 550 LSKWPD-KQLCAVAASGLAERLADEPQLPKD-LHRQGVVIVLNALSKWP------------DTAVCAEAVNALAERLVDE 615 (2710)
T ss_pred hhcCCc-hhHHHHHHHHHHHHhhcchhhHHh-hhhhHHHHHHHhhccCC------------CcHHHHHHHHHHHHHhccC
Confidence 444333 244444444555443334444333 33445555666655311 1122222222222211134
Q ss_pred hHHHHHHHHcCchHHHHHHHhcCCchHHHHHHHHHHhhh-ccccccccCCCCCCCCCCCcccccccccCCCCCCCCcccc
Q 003530 591 PDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENL-SLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHR 669 (813)
Q Consensus 591 ~~~~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~l-s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (813)
+..+..+-..++...+-.+-+-+ ....-+.|+..|..- ..+. .+ .
T Consensus 616 ~~lr~~l~~q~lan~lNALSKWP-~s~~C~~Aa~rLA~rl~~~~-~l---------------~----------------- 661 (2710)
T PRK14707 616 PDLRKELDPVDVTNVLNALSKWP-GTEVCAEVARLLAGRLVGDR-LL---------------R----------------- 661 (2710)
T ss_pred hhhhhhccHHHHHHHHhhhhcCC-CchHHHHHHHHHHHHhhhch-hh---------------H-----------------
Confidence 44433332222222333332333 334445555554321 1110 00 0
Q ss_pred cccCccccchhhhccchHHHHHhhc-cCchhHHHHHHHHHHhhhhcCcchhhHHHHHHhhcCcHHHHHHHhhcCChHH-H
Q 003530 670 GLCSLKETFCLLEGHAVEKLIALLD-HTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENL-Q 747 (813)
Q Consensus 670 ~~~~~~~~~~l~~~gai~~Lv~lL~-~~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~-~ 747 (813)
..| .+..|.-+++-|. =++.++...|+.+|..-+.++. ....-....+|.-+++-|+--++... +
T Consensus 662 ------~~f---naQ~vAn~LNALSKWPe~e~Cr~Aa~~LA~rLa~~~----~Lr~al~pQ~vAN~LNALSKWP~~~~Cr 728 (2710)
T PRK14707 662 ------KTF---NSLDVANALNALSKWPDTPVCAAAAGGMAERLAADP----GLRKELNPVDVANALNALSKWPRTPVCA 728 (2710)
T ss_pred ------hhc---chHHHHHHHHhhhcCCCchHHHHHHHHHHHHHhcCh----hhHhhcCHHHHHHHHhhhhcCCCcHHHH
Confidence 011 1334555566665 3566666677777754443332 11222344666666677743344433 3
Q ss_pred HHHHHHHHHHHcchhhhhhhcCCCcchHHHHHHhhhcCchhHHHHHHHHH-HhcccCCCC
Q 003530 748 RRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALK-HIDKIPNFS 806 (813)
Q Consensus 748 ~~a~~aL~~i~~~~~~~~~~~~~~~~~~~Lv~~l~~~~~~~~~~Aa~~L~-~l~~~~~~s 806 (813)
..|.++=.++...++.+..+.. ..+...|-.+-+=.+...=..|+.+|+ +|.+.++..
T Consensus 729 ~AA~~LA~rL~~~p~l~~a~~a-QevANaLNALSKWPd~~~C~~AA~aLA~rLa~~~~Lr 787 (2710)
T PRK14707 729 AVASALAARVVAEPRLRKAFDA-QQVATALNALSKWPDNQACAAAANTLAERQLREPDVR 787 (2710)
T ss_pred HHHHHHHHHHhcChhhhhhcCH-HHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhCcchh
Confidence 4444444566555665554432 222223333333344333444444444 555544433
No 154
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.01 E-value=0.00038 Score=64.25 Aligned_cols=44 Identities=23% Similarity=0.438 Sum_probs=37.9
Q ss_pred eecccccccCCCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCC
Q 003530 33 FVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKEL 82 (813)
Q Consensus 33 ~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l 82 (813)
|.|-||++-++.||++.|||.||-.|-.+-... ...|-+|+...
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k------g~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK------GDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhcc------CCcceecchhh
Confidence 999999999999999999999999996665543 37899998754
No 155
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=96.98 E-value=0.00044 Score=67.50 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=41.1
Q ss_pred CCCceecccccccCCCcee-cCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcC
Q 003530 29 IYDAFVCPLTKQVMRDPVT-LENGQTFEREAIEKWFKECRENGRKPVCPLTQKE 81 (813)
Q Consensus 29 ~~~~~~Cpi~~~~m~dpv~-~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~ 81 (813)
.--+++||++.+...+||+ ..|||.|+|..|++++.. .....||+-++.
T Consensus 173 e~fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~----~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 173 EVFSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCD----EITIRCPVLGCE 222 (262)
T ss_pred hhhcccCchhhhhhhchhhhcCcCcchhhhhHHHHhcc----CceeecccccCC
Confidence 3446999999999999998 899999999999999863 122579999875
No 156
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=1.1 Score=51.40 Aligned_cols=285 Identities=14% Similarity=0.160 Sum_probs=154.3
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHH
Q 003530 415 VHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELA 494 (813)
Q Consensus 415 v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~ 494 (813)
.+-+-.+|++....+...+++++.++..-.. +... .++..|-.++.++..-+|.+|.+.|.-++...+..+.
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~--r~l~------pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~ 318 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNS--RELA------PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT 318 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCH--hhcc------hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc
Confidence 4445557777888999999999998876532 1221 2678888899999999999999999988843333211
Q ss_pred HHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhhhccccccCCccchhhhH
Q 003530 495 DALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLE 574 (813)
Q Consensus 495 ~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e 574 (813)
. +=..|=.++.+.+. .+-..|...| |..+.+.....|+ ..+..+..+...+ -.-+.-
T Consensus 319 --~-----cN~elE~lItd~Nr--sIat~AITtL--LKTG~e~sv~rLm-----~qI~~fv~disDe-------FKivvv 375 (865)
T KOG1078|consen 319 --V-----CNLDLESLITDSNR--SIATLAITTL--LKTGTESSVDRLM-----KQISSFVSDISDE-------FKIVVV 375 (865)
T ss_pred --c-----cchhHHhhhccccc--chhHHHHHHH--HHhcchhHHHHHH-----HHHHHHHHhcccc-------ceEEeH
Confidence 0 11223333444443 2223333222 2233333333333 2233333332110 011222
Q ss_pred hHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHHhcCCchHHHHHHHHHHhhhccccccccCCCCCCCCCCCcccccc
Q 003530 575 GLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPC 654 (813)
Q Consensus 575 ~a~~aL~~~~~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~ls~~~~~l~~~~~~~~~~~~~~~~~~ 654 (813)
.++.+|+... |.-. .+.++.|-.+|+.+|..+-|+....++..+....++.
T Consensus 376 dai~sLc~~f------p~k~-----~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pds------------------ 426 (865)
T KOG1078|consen 376 DAIRSLCLKF------PRKH-----TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDS------------------ 426 (865)
T ss_pred HHHHHHHhhc------cHHH-----HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcch------------------
Confidence 3445554432 2222 1345667777777656677777777765555432211
Q ss_pred cccCCCCCCCCcccccccCccccchhhhccchHHHHHhhccCchhHHHHHHHHHHhhhhcCcchhhHHHHHHhhcCcHHH
Q 003530 655 FSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPI 734 (813)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~~~~~v~~L 734 (813)
+.-++..|+...++ .+-..-+..-|+-|..+... ......=|..+
T Consensus 427 ---------------------------Ke~~L~~LCefIED--ce~~~i~~rILhlLG~EgP~------a~~Pskyir~i 471 (865)
T KOG1078|consen 427 ---------------------------KERGLEHLCEFIED--CEFTQIAVRILHLLGKEGPK------APNPSKYIRFI 471 (865)
T ss_pred ---------------------------hhHHHHHHHHHHHh--ccchHHHHHHHHHHhccCCC------CCCcchhhHHH
Confidence 12355666666652 23334455556666655431 11122223333
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHcchhhhhhhcCCCcchHHHHHHhhhcCchhHHHHHHHHHHhc
Q 003530 735 LDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHID 800 (813)
Q Consensus 735 ~~ll~~~~~~~~~~~a~~aL~~i~~~~~~~~~~~~~~~~~~~Lv~~l~~~~~~~~~~Aa~~L~~l~ 800 (813)
...+ --.+.-++..|+-+|.+|... ..+.-..++..|...+-+.|..+|.+|.-+|..|.
T Consensus 472 yNRv-iLEn~ivRaaAv~alaKfg~~-----~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 472 YNRV-ILENAIVRAAAVSALAKFGAQ-----DVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhh-hhhhhhhHHHHHHHHHHHhcC-----CCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 3333 246677777888888888622 12223334456777788888888888888888776
No 157
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00043 Score=68.63 Aligned_cols=44 Identities=18% Similarity=0.356 Sum_probs=39.3
Q ss_pred eecccccccCCCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCC
Q 003530 33 FVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKEL 82 (813)
Q Consensus 33 ~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l 82 (813)
|-|=||++.|.+||+..|||+||..|-.+.+.. ...|++|++..
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk------~~~c~vC~~~t 285 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK------GEKCYVCSQQT 285 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhcccccc------CCcceeccccc
Confidence 899999999999999999999999998777764 36899998865
No 158
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.0032 Score=67.70 Aligned_cols=188 Identities=11% Similarity=0.060 Sum_probs=137.8
Q ss_pred cHHHHHHHHHHHhhcCCcccccccccCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhcc
Q 003530 124 DIMPALKYVQYFCQSSRSNKHVVHNSELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSH 203 (813)
Q Consensus 124 ~~~~al~~l~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~ 203 (813)
+...++-.|+.+.+....-|.-+.++..++.|+++|+.++.-+.--+...++++...-..-+..+.+.|.|..|+.++.+
T Consensus 405 ~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s 484 (743)
T COG5369 405 DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS 484 (743)
T ss_pred HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence 33445666777777666667777888899999999988766666667888888877655678889999999999999999
Q ss_pred CcHHHHHHHHHHHHHhhcCchhHh--HHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhcc-C---CccHHHHHHc-
Q 003530 204 ELSREREEAVSLLYELSKSEALCE--KIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEK-C---ENNVRQMAEN- 276 (813)
Q Consensus 204 ~~~~~~~~a~~~L~~ls~~~~~~~--~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~-~---~~~~~~i~~~- 276 (813)
.|...|.+..|+|+++.-..+..+ +... .-++..++.+.+ +++-.+++....+|+|+.. . ++.+....+.
T Consensus 485 KDdaLqans~wvlrHlmyncq~~ekf~~La-kig~~kvl~~~N--Dpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~ 561 (743)
T COG5369 485 KDDALQANSEWVLRHLMYNCQKNEKFKFLA-KIGVEKVLSYTN--DPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKAT 561 (743)
T ss_pred chhhhhhcchhhhhhhhhcCcchhhhhhHH-hcCHHHHHHHhc--CcccccHHHHHHHHHhcccccccccccceeEEecC
Confidence 999999999999999987654442 2232 367889999998 7888999999999999933 2 2333322222
Q ss_pred --C-ChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhHHHH
Q 003530 277 --G-RLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLV 314 (813)
Q Consensus 277 --G-~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i 314 (813)
. ....|++.+...++-.-...+-.|.+++..+++...+
T Consensus 562 p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~ 602 (743)
T COG5369 562 PRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYI 602 (743)
T ss_pred hHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHH
Confidence 1 4556777777776655555577777777766554433
No 159
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.90 E-value=0.0017 Score=45.51 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=36.1
Q ss_pred chhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhc
Q 003530 183 DNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSK 221 (813)
Q Consensus 183 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~ 221 (813)
+++..+.+.|+++.|+++|.+++.+++..++++|++|+.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 578889999999999999999999999999999999863
No 160
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.87 E-value=0.042 Score=63.95 Aligned_cols=200 Identities=15% Similarity=0.138 Sum_probs=147.4
Q ss_pred cccCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhcc-C--cHHHHHHHHHHHHHhhcCc
Q 003530 147 HNSELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSH-E--LSREREEAVSLLYELSKSE 223 (813)
Q Consensus 147 ~~~g~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~-~--~~~~~~~a~~~L~~ls~~~ 223 (813)
..-|+.|-++++|+++..+++---+-+=.++..-++.++..+++.++-.-+++.|.. + +++-|.-|+-+|..+..+-
T Consensus 509 LsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf 588 (1387)
T KOG1517|consen 509 LSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF 588 (1387)
T ss_pred hccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc
Confidence 457999999999999988877654444444433346888889998888888888876 2 2355777888888887654
Q ss_pred -hhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhh-ccCCccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHH
Q 003530 224 -ALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANL-EKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFL 301 (813)
Q Consensus 224 -~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L-~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L 301 (813)
...+... ..+.|..-...|+. +..+-.+.-.+-+|..| ..+++++..=++.++.+.|+.+|.+..++++..|+.+|
T Consensus 589 ~lGQ~acl-~~~li~iCle~lnd-~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFAL 666 (1387)
T KOG1517|consen 589 KLGQKACL-NGNLIGICLEHLND-DPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFAL 666 (1387)
T ss_pred chhHHHhc-cccHHHHHHHHhcC-CccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHH
Confidence 3334443 45777777888882 13688899999999999 66788888888889999999999999999999999999
Q ss_pred HHhcCC-----chhHHHH------------HhhhH----HHHHHHHhcCCHHHHHHHHHHHHHhhCCc
Q 003530 302 GDLALN-----SDVKVLV------------ARTVG----SCLINIMKSGNMQAREAALKALNQISSCE 348 (813)
Q Consensus 302 ~~L~~~-----~~~~~~i------------~~~gi----~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~ 348 (813)
+.+..+ ++....+ .+.-+ -.++.+++.+++-++...+-+|..+....
T Consensus 667 gtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 667 GTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred HHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 998773 2222222 12222 36777778888888888888887776643
No 161
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.85 E-value=0.0024 Score=44.76 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=34.5
Q ss_pred CccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhc
Q 003530 267 ENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLA 305 (813)
Q Consensus 267 ~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~ 305 (813)
++++..+++.|++++|+++|.+++.+++..++++|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 347788889999999999999889999999999999986
No 162
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.81 E-value=0.00084 Score=71.24 Aligned_cols=53 Identities=21% Similarity=0.344 Sum_probs=46.0
Q ss_pred CCceecccccccCCCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCC
Q 003530 30 YDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELR 83 (813)
Q Consensus 30 ~~~~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~ 83 (813)
-.+..|-+|.++-.||+...|.|+|||-||.+|...+..+.. .+||+|...+.
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~n-vtCP~C~i~Ls 586 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNN-VTCPVCHIGLS 586 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccC-CCCcccccccc
Confidence 356899999999999999999999999999999997655554 89999987664
No 163
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.74 E-value=0.36 Score=48.09 Aligned_cols=253 Identities=16% Similarity=0.162 Sum_probs=150.8
Q ss_pred HHHHHHHhccCcHH--HHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHH
Q 003530 194 VRTIVKFLSHELSR--EREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVR 271 (813)
Q Consensus 194 i~~Lv~lL~~~~~~--~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~ 271 (813)
+..+.+.|.+.+.. .|-.|.-.|+++.. .+.+..+.+... +++...+...+.+| .
T Consensus 5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~-----------~~~i~~i~ka~~--d~s~llkhe~ay~L----------g 61 (289)
T KOG0567|consen 5 IETIGNILVNKSQPLQNRFRALFNLRNLLG-----------PAAIKAITKAFI--DDSALLKHELAYVL----------G 61 (289)
T ss_pred HHHHHHHHcCccHHHHHHHHHHHhhhccCC-----------hHHHHHHHHhcc--cchhhhccchhhhh----------h
Confidence 44555556553322 24445555555432 344566666665 34444444455444 4
Q ss_pred HHHHcCChHHHHHHHccC--CHHHHHHHHHHHHHhcCCchhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCCcc
Q 003530 272 QMAENGRLQPLLTQILEG--PQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEP 349 (813)
Q Consensus 272 ~i~~~G~i~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~ 349 (813)
++.....++.|+..|.+. .+-+|-.++.+|+.+. .++. ++.|-+..+++...+++.+..|+..+--...
T Consensus 62 Q~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~~~--------~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~ 132 (289)
T KOG0567|consen 62 QMQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DPES--------LEILTKYIKDPCKEVRETCELAIKRLEWKDI 132 (289)
T ss_pred hhccchhhHHHHHHhcccccchHHHHHHHHHHHhhc-chhh--------HHHHHHHhcCCccccchHHHHHHHHHHHhhc
Confidence 455667899999999866 4677889999999876 3322 3445555555666777777777776632110
Q ss_pred -----cHHHH--------HHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHH
Q 003530 350 -----SAKVL--------IHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVH 416 (813)
Q Consensus 350 -----~~~~i--------~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~ 416 (813)
+.... ...+-|..|-..|...+ .+.--+..|.-.|+|+.. +..|.
T Consensus 133 ~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t---~~l~~Ry~amF~LRn~g~-------------------EeaI~ 190 (289)
T KOG0567|consen 133 IDKIANSSPYISVDPAPPANLSSVHELRAELLDET---KPLFERYRAMFYLRNIGT-------------------EEAIN 190 (289)
T ss_pred cccccccCccccCCCCCccccccHHHHHHHHHhcc---hhHHHHHhhhhHhhccCc-------------------HHHHH
Confidence 00000 11222444444444432 123334455556655422 45678
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCC--hHHHHHHHHHHHHhCCCCCHHHH
Q 003530 417 NLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQ--NDLRLASIELIQNLSPHMGHELA 494 (813)
Q Consensus 417 ~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~v~~~A~~~L~~Ls~~~~~~~~ 494 (813)
.|++=+..++.-.|..++.+|..|-+. -+++.|.+.|.+.. +-+|..|+.+|..++..
T Consensus 191 al~~~l~~~SalfrhEvAfVfGQl~s~--------------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e------ 250 (289)
T KOG0567|consen 191 ALIDGLADDSALFRHEVAFVFGQLQSP--------------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE------ 250 (289)
T ss_pred HHHHhcccchHHHHHHHHHHHhhccch--------------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH------
Confidence 888888878888888888888766332 34777777776654 57899999999987741
Q ss_pred HHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHh
Q 003530 495 DALRGAVGQLGSLIRVISENVGISKEQAAAVGLLA 529 (813)
Q Consensus 495 ~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~ 529 (813)
.+++.|.+.+.++.+ -++..+..+|.
T Consensus 251 -------~~~~vL~e~~~D~~~--vv~esc~vald 276 (289)
T KOG0567|consen 251 -------DCVEVLKEYLGDEER--VVRESCEVALD 276 (289)
T ss_pred -------HHHHHHHHHcCCcHH--HHHHHHHHHHH
Confidence 366778888877775 55555555553
No 164
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.71 E-value=0.0017 Score=52.53 Aligned_cols=48 Identities=25% Similarity=0.450 Sum_probs=36.7
Q ss_pred ceecccccccCCC-cee-cCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCC
Q 003530 32 AFVCPLTKQVMRD-PVT-LENGQTFEREAIEKWFKECRENGRKPVCPLTQKEL 82 (813)
Q Consensus 32 ~~~Cpi~~~~m~d-pv~-~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l 82 (813)
+-+||.|+..=.| |++ =.|||.|-..||.+|++.. .+ ...||.||++.
T Consensus 32 dg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~--~~-~~~CPmCR~~w 81 (85)
T PF12861_consen 32 DGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQ--SS-KGQCPMCRQPW 81 (85)
T ss_pred ccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccc--cC-CCCCCCcCCee
Confidence 3567777776655 655 5899999999999999962 23 37899999865
No 165
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.67 E-value=0.14 Score=60.82 Aligned_cols=300 Identities=13% Similarity=0.110 Sum_probs=161.9
Q ss_pred HHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHc
Q 003530 361 PPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGL 440 (813)
Q Consensus 361 ~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L 440 (813)
+.+...+++-. ....|..|+..|..|+..-.+-. .-..++|-++.++.+...++|..|+.+|..+
T Consensus 425 s~lts~IR~lk----~~~tK~~ALeLl~~lS~~i~de~-----------~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~ 489 (1431)
T KOG1240|consen 425 SVLTSCIRALK----TIQTKLAALELLQELSTYIDDEV-----------KLDRVLPYFVHLLMDSEADVRATALETLTEL 489 (1431)
T ss_pred HHHHHHHHhhh----cchhHHHHHHHHHHHhhhcchHH-----------HHhhhHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 45555555432 46889999999999987544322 2257899999999999999999999999876
Q ss_pred ccCCCchHHHHHHHHhcCCHHHHHHhhhCCC-hHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChH
Q 003530 441 TSSPTTVLSVVSAIKSSGATISLVQFVEAPQ-NDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISK 519 (813)
Q Consensus 441 ~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~ 519 (813)
-..-......-..|.-.-..+.|-.|+.+.+ ..+|..=+..|..|+... -.+... +.-.....+++++++ +
T Consensus 490 L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA-----~rFle~-~q~~~~~g~~n~~ns--e 561 (1431)
T KOG1240|consen 490 LALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTA-----YRFLEL-TQELRQAGMLNDPNS--E 561 (1431)
T ss_pred HhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHH-----HHHHHH-HHHHHhcccccCccc--c
Confidence 5431000001112233445778888888844 466666666666666311 111111 122223334454443 2
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhcCcHH-HHHHHhhhhccccccCCccchhhhHhHHHHHHHHhccCCCChHHHHHHH
Q 003530 520 EQAAAVGLLAELPERDLGLTRQMLDEGAFG-LIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCC 598 (813)
Q Consensus 520 ~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~-~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~ 598 (813)
. ..+. ..+.+. ++|.+ .|+ ..+.+|.+.. ...+..+.+. +.-||.|. + -...
T Consensus 562 t-------~~~~-~~~~~~-~~L~~--~V~~~v~sLlsd~~------~~Vkr~Lle~-i~~LC~FF-G---k~ks----- 614 (1431)
T KOG1240|consen 562 T-------APEQ-NYNTEL-QALHH--TVEQMVSSLLSDSP------PIVKRALLES-IIPLCVFF-G---KEKS----- 614 (1431)
T ss_pred c-------cccc-ccchHH-HHHHH--HHHHHHHHHHcCCc------hHHHHHHHHH-HHHHHHHh-h---hccc-----
Confidence 0 0000 011222 22221 122 2333443311 0011122222 33333332 1 0000
Q ss_pred HcCchHHHHHHHhcCCchHHHHHHHHHHhhhccccccccCCCCCCCCCCCcccccccccCCCCCCCCcccccccCccccc
Q 003530 599 EHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETF 678 (813)
Q Consensus 599 ~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~ls~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (813)
..=+++.|+..|++. ++.+|..--..+.-+ -.++.++
T Consensus 615 ND~iLshLiTfLNDk-Dw~LR~aFfdsI~gv----------------------si~VG~r-------------------- 651 (1431)
T KOG1240|consen 615 NDVILSHLITFLNDK-DWRLRGAFFDSIVGV----------------------SIFVGWR-------------------- 651 (1431)
T ss_pred ccchHHHHHHHhcCc-cHHHHHHHHhhccce----------------------EEEEeee--------------------
Confidence 112356788888888 776663221111100 0111111
Q ss_pred hhhhccchHHHHHhhccCchhHHHHHHHHHHhhhhcCcchhhHHHHHHhhcCcHHHHHHHhhcCChHHHHHHHHHHHHHH
Q 003530 679 CLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERIL 758 (813)
Q Consensus 679 ~l~~~gai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~~a~~aL~~i~ 758 (813)
-++.+-+|.|.+-|.++++.|...|+++|..|...+---++.+..|.+ ...=+|. +++.=+|..++..+..+.
T Consensus 652 -s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~-----~v~PlL~-hPN~WIR~~~~~iI~~~~ 724 (1431)
T KOG1240|consen 652 -SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQ-----DVLPLLC-HPNLWIRRAVLGIIAAIA 724 (1431)
T ss_pred -eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHH-----hhhhhee-CchHHHHHHHHHHHHHHH
Confidence 136778899999999999999999999999998765433333333332 2222343 788889999988888777
Q ss_pred cc
Q 003530 759 RT 760 (813)
Q Consensus 759 ~~ 760 (813)
+.
T Consensus 725 ~~ 726 (1431)
T KOG1240|consen 725 RQ 726 (1431)
T ss_pred hh
Confidence 55
No 166
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.61 E-value=0.053 Score=54.98 Aligned_cols=257 Identities=14% Similarity=0.142 Sum_probs=156.4
Q ss_pred HhcCCCHHHHHHHHHHHHHhhccCcchhhhhh-cCCCHHHHHHHhccC--cHHHHHHHHHHHHHhhcCchhHhHHhhhhc
Q 003530 158 MLKSSSRKVRCTALETLRIVVEEDDDNKEILG-QGDTVRTIVKFLSHE--LSREREEAVSLLYELSKSEALCEKIGSING 234 (813)
Q Consensus 158 lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~-~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g 234 (813)
++++-++-.+.-|+++|.++.... +.|..+- +...-..++.+|++. +...|.+++-.+|-++-++...+.|-+...
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~~-e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~d 235 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFDV-EKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDD 235 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 334456668888999999998875 4555443 344556777888754 456789999999999999888866655556
Q ss_pred hHHHHHHhcccCCCCHHHHHHHHHHHHhhcc-CC-ccHHHHHHcCChHHHHHHHccC---CHHHHHHHHHHHHHhcCCch
Q 003530 235 AILILVGMTSSKSENLLTVEKAEKTLANLEK-CE-NNVRQMAENGRLQPLLTQILEG---PQETKLSLAAFLGDLALNSD 309 (813)
Q Consensus 235 ~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~-~~-~~~~~i~~~G~i~~Lv~lL~~~---~~~~~~~a~~~L~~L~~~~~ 309 (813)
.|.-|+.+.+. ...+.+.+-+++++.|++. .+ +....+.-.|-+.+-++.|... +++++...-.+=..|-. +.
T Consensus 236 li~dli~iVk~-~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~-~~ 313 (432)
T COG5231 236 LINDLIAIVKE-RAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQ-NT 313 (432)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHh-hh
Confidence 78888888873 3456677888899999865 33 3344555667677788887665 55554433222111111 00
Q ss_pred hHHHHHhhhHHHHHHHHhcC----CHHHHHHHHHHHHHhhCCcccHHHHHH--cCChHHHHHHHhccCCCCCChhHHHHH
Q 003530 310 VKVLVARTVGSCLINIMKSG----NMQAREAALKALNQISSCEPSAKVLIH--AGILPPLVKDLFTVGSNHLPMRLKEVS 383 (813)
Q Consensus 310 ~~~~i~~~gi~~Lv~lL~~~----~~~~~~~a~~aL~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~~~~~~a 383 (813)
-+-.+.+ .-+.=|.++ +|.-...- .-..|.+.+.+ ...+..|.+++++.. + ...-..|
T Consensus 314 k~l~~fD----~Y~~ELdsg~l~wSp~H~~~d--------FWs~N~d~l~kdny~i~k~L~~~lq~n~---~-nt~i~vA 377 (432)
T COG5231 314 KKLCIFD----NYLNELDSGRLEWSPYHHKKD--------FWSTNLDMLIKDNYEIVKVLKKYLQSNN---P-NTWICVA 377 (432)
T ss_pred hhhhHHH----HHHHHHhhCcccCCCcccccC--------chhhhHHHHhhhhHHHHHHHHHHHhcCC---C-CceEeee
Confidence 0000000 011111111 11000000 01245556654 346788999998753 2 2233344
Q ss_pred HHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcc
Q 003530 384 ATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLT 441 (813)
Q Consensus 384 ~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~ 441 (813)
+.=+..+.+..+.-.. .+...|+=..++.|+++++++++..|+.++..+.
T Consensus 378 c~Di~~~Vr~~PE~~~--------vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 378 CSDIFQLVRASPEINA--------VLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HhhHHHHHHhCchHHH--------HHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 4445555554443332 4566788889999999999999999999987654
No 167
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.58 E-value=0.14 Score=52.01 Aligned_cols=235 Identities=12% Similarity=0.114 Sum_probs=148.2
Q ss_pred CCCHHHHHHHHHHHHhhccCCccHHHHH-HcCChHHHHHHHccC--CHHHHHHHHHHHHHhcCCchhHHHHHhhh--HHH
Q 003530 247 SENLLTVEKAEKTLANLEKCENNVRQMA-ENGRLQPLLTQILEG--PQETKLSLAAFLGDLALNSDVKVLVARTV--GSC 321 (813)
Q Consensus 247 s~~~~~~~~a~~~L~~L~~~~~~~~~i~-~~G~i~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~g--i~~ 321 (813)
+-++-.+--|+.+|.++...++.|..+- +...-..+++.++.. +..+|.+..-+++.|..++...+.|...- +.-
T Consensus 160 ~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~d 239 (432)
T COG5231 160 LIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLIND 239 (432)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 3445567788899999988888876554 445667788888753 67899999999999999888776666542 678
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHhhC-Cc-ccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCC---
Q 003530 322 LINIMKSG-NMQAREAALKALNQISS-CE-PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGH--- 395 (813)
Q Consensus 322 Lv~lL~~~-~~~~~~~a~~aL~~Ls~-~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~--- 395 (813)
|+++.++. .+++-+-+++.+.|++. .| +....+.-.|-+.+-++.|....- .+.+++...-.+=..|-....
T Consensus 240 li~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erky--sDEel~~di~~i~s~l~~~~k~l~ 317 (432)
T COG5231 240 LIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKY--SDEELVIDIERIRSRLVQNTKKLC 317 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHhhhhhhh
Confidence 88888753 56788899999999988 33 444555555655555666654331 123443322221111111100
Q ss_pred --------------CCccc--ccC---CCCcccc--chhhHHHHHHhhcCCChH-HHHHHHHHHHHcccCCCchHHHHHH
Q 003530 396 --------------DFDSI--TVG---PDNQTLV--SEDIVHNLLHLISNTGPT-IECKLLQVLVGLTSSPTTVLSVVSA 453 (813)
Q Consensus 396 --------------~~~~~--~~~---~~~~~l~--~~~~v~~Lv~lL~~~~~~-~~~~a~~~L~~L~~~~~~~~~~~~~ 453 (813)
.|... .-+ .|...+. .-..+..|.+++++..+. ...-|+.-+..+..... +.+..
T Consensus 318 ~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~P---E~~~v 394 (432)
T COG5231 318 IFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASP---EINAV 394 (432)
T ss_pred HHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCc---hHHHH
Confidence 00000 000 0001111 123566777888765554 33345555555554432 45667
Q ss_pred HHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhC
Q 003530 454 IKSSGATISLVQFVEAPQNDLRLASIELIQNLS 486 (813)
Q Consensus 454 i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls 486 (813)
+..-|+-+.+++++++++++++..|..++..+.
T Consensus 395 l~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 395 LSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 777899999999999999999999998887654
No 168
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.56 E-value=0.059 Score=54.59 Aligned_cols=180 Identities=21% Similarity=0.179 Sum_probs=106.7
Q ss_pred CCCHHHHHHHHHHHHhhccCC---ccHHHHHHc--CChHHHHHHHccCCHHHHHHHHHHHHHhcCCchh-HHHHHhhhHH
Q 003530 247 SENLLTVEKAEKTLANLEKCE---NNVRQMAEN--GRLQPLLTQILEGPQETKLSLAAFLGDLALNSDV-KVLVARTVGS 320 (813)
Q Consensus 247 s~~~~~~~~a~~~L~~L~~~~---~~~~~i~~~--G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~-~~~i~~~gi~ 320 (813)
+.+=+.+..|+.-|..+.... +....+.+. ..++.++..+.+....+...++.++..|+..-.. -....+.-+|
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~ 97 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLP 97 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 456667777777777775433 333333332 5667777777777777888899999988863222 2222333479
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCccc
Q 003530 321 CLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSI 400 (813)
Q Consensus 321 ~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 400 (813)
.|++.+.+++..+++.|..+|..++.+-.....+ .++.+...+.+ .++.++..++..|..+...-.....
T Consensus 98 ~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~-----Kn~~vR~~~~~~l~~~l~~~~~~~~- 167 (228)
T PF12348_consen 98 PLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKS-----KNPQVREECAEWLAIILEKWGSDSS- 167 (228)
T ss_dssp HHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT------S-HHHHHHHHHHHHHHHTT-----G-
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHccchHh-
Confidence 9999999999999999999999998864311111 02333334443 3589999999999888765441111
Q ss_pred ccCCCCccccc----hhhHHHHHHhhcCCChHHHHHHHHHHHHcccC
Q 003530 401 TVGPDNQTLVS----EDIVHNLLHLISNTGPTIECKLLQVLVGLTSS 443 (813)
Q Consensus 401 ~~~~~~~~l~~----~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 443 (813)
.+.. ...++.+..++.++++++|+.|-.+++.+...
T Consensus 168 -------~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 168 -------VLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp -------GG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred -------hhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 1222 35778888899999999999999999887543
No 169
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0011 Score=75.96 Aligned_cols=45 Identities=20% Similarity=0.576 Sum_probs=40.6
Q ss_pred CceecccccccCCC-----ceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcC
Q 003530 31 DAFVCPLTKQVMRD-----PVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKE 81 (813)
Q Consensus 31 ~~~~Cpi~~~~m~d-----pv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~ 81 (813)
.+-.|+||.+.|.. |-.++|||.|...|+.+|++. ..+||.|+..
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er------~qtCP~CR~~ 339 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER------QQTCPTCRTV 339 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH------hCcCCcchhh
Confidence 35799999999999 778999999999999999997 4799999873
No 170
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.51 E-value=1.6 Score=48.50 Aligned_cols=364 Identities=16% Similarity=0.158 Sum_probs=189.8
Q ss_pred HHHHHHHhcCCH---HHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCC
Q 003530 320 SCLINIMKSGNM---QAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD 396 (813)
Q Consensus 320 ~~Lv~lL~~~~~---~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~ 396 (813)
|.|+..|.+... ...+..+.+|..+|.+++--+.+ ++.|+..+........+.......+.+|.++......
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~-----~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~ 76 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSPQILETL-----SIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQE 76 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHH-----HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccc
Confidence 556666655332 56788999999999987655543 2334444433211111345556666777676554433
Q ss_pred CcccccCCCCccccchhhHHHHHHhhcCC-------ChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhh-
Q 003530 397 FDSITVGPDNQTLVSEDIVHNLLHLISNT-------GPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVE- 468 (813)
Q Consensus 397 ~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~-------~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~- 468 (813)
... +.+........+++.++++.... ++.+.+.+..++..+...-. .+.+.. + +..++.+..
T Consensus 77 ~~~---~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~-~~~q~~-~-----~~~~~~lf~~ 146 (415)
T PF12460_consen 77 DKQ---FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLS-PEKQQE-I-----LDELYSLFLS 146 (415)
T ss_pred ccc---cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCC-HHHHHH-H-----HHHHHHHHcc
Confidence 220 00111222334788887776432 13444445555544444322 112222 2 334444333
Q ss_pred ---------CCC------hHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCC
Q 003530 469 ---------APQ------NDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPE 533 (813)
Q Consensus 469 ---------~~~------~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~ 533 (813)
... .....-...+++.+-+...-. .....+..++.+..+... ...+..++.+++.+..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~------~~~~ll~~l~~~~~~~~~-~~~~~~~~~~la~LvN 219 (415)
T PF12460_consen 147 PKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP------DLEELLQSLLNLALSSED-EFSRLAALQLLASLVN 219 (415)
T ss_pred ccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc------CHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHc
Confidence 111 111222334555555332110 111356778888777765 5788888888877654
Q ss_pred C--CHHHHHHHHhcCcHHHHHHHhhhhccccccCCccchhhhHhHHHHHHHHhcc--CCCChHHHHHHHHcCchHHHHHH
Q 003530 534 R--DLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFV--LSDEPDAIALCCEHNLAALFIEL 609 (813)
Q Consensus 534 ~--~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~--l~~~~~~~~~~~~~~~i~~L~~l 609 (813)
. +.+ .+..+++.+...- .+.........++.++.+++.. +..+|...+ .+..|+++
T Consensus 220 K~~~~~---------~l~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~------~~~~L~~l 279 (415)
T PF12460_consen 220 KWPDDD---------DLDEFLDSLLQSI-----SSSEDSELRPQALEILIWITKALVMRGHPLATE------LLDKLLEL 279 (415)
T ss_pred CCCChh---------hHHHHHHHHHhhh-----cccCCcchhHHHHHHHHHHHHHHHHcCCchHHH------HHHHHHHH
Confidence 2 111 1222222222100 0011222233344444444422 113444332 23456666
Q ss_pred HhcCCchHHHHHHHHHHhhhccccccccCCCCCCCCCCCcccccccccCCCCCCCCcccccccCccccchhhhccchHHH
Q 003530 610 LQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKL 689 (813)
Q Consensus 610 L~~~~~~~vk~~Aa~aL~~ls~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gai~~L 689 (813)
+.+ +.+...||.++.-+..+.+...... .+ ..++-+ .++.|. ...+|.|
T Consensus 280 L~~---~~~g~~aA~~f~il~~d~~~~l~~~---~~----a~vklL------------------ykQR~F---~~~~p~L 328 (415)
T PF12460_consen 280 LSS---PELGQQAAKAFGILLSDSDDVLNKE---NH----ANVKLL------------------YKQRFF---TQVLPKL 328 (415)
T ss_pred hCC---hhhHHHHHHHHhhHhcCcHHhcCcc---cc----chhhhH------------------HhHHHH---HHHHHHH
Confidence 655 5788899999988877633321100 00 000000 122222 4478899
Q ss_pred HHhhccCchhHHHHHHHHHHhhhhcCcchhhHHHHHHhhcCcHHHHHHHhhcCChHHHHHHHHHHHHHHcc
Q 003530 690 IALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT 760 (813)
Q Consensus 690 v~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~~a~~aL~~i~~~ 760 (813)
++-.+..+.+.+..-+.||+.+..+-. +.+-.-.-..-+|.|++-| +..|.+++..+...|..+...
T Consensus 329 ~~~~~~~~~~~k~~yL~ALs~ll~~vP---~~vl~~~l~~LlPLLlqsL-~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 329 LEGFKEADDEIKSNYLTALSHLLKNVP---KSVLLPELPTLLPLLLQSL-SLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred HHHHhhcChhhHHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHc
Confidence 999998888899999999999997532 1222222234567789999 588999999999999999865
No 171
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.0019 Score=63.38 Aligned_cols=49 Identities=16% Similarity=0.261 Sum_probs=40.6
Q ss_pred CceecccccccCCCceec-CCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCC
Q 003530 31 DAFVCPLTKQVMRDPVTL-ENGQTFEREAIEKWFKECRENGRKPVCPLTQKELR 83 (813)
Q Consensus 31 ~~~~Cpi~~~~m~dpv~~-~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~ 83 (813)
...+||+|++.-..|.++ +|||.||-.||..-+.. +- .++||.|+++..
T Consensus 238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~---~a-sf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLW---DA-SFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCCeeeccccceeehhhhhhhhcc---hh-hcccCccCCCCc
Confidence 348999999999999875 59999999999888764 22 389999998654
No 172
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.0022 Score=66.68 Aligned_cols=47 Identities=17% Similarity=0.568 Sum_probs=39.3
Q ss_pred eecccccccCCC--ce-ecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCC
Q 003530 33 FVCPLTKQVMRD--PV-TLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRS 84 (813)
Q Consensus 33 ~~Cpi~~~~m~d--pv-~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~ 84 (813)
++|-||.|-+.+ -+ ++||+|.|=..||-.|+.+ . +.+||+|++....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~----~-r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQ----T-RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhh----c-CccCCCCCCcCCC
Confidence 799999999954 44 5999999999999999986 2 3689999986543
No 173
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.0026 Score=63.14 Aligned_cols=47 Identities=19% Similarity=0.526 Sum_probs=38.6
Q ss_pred eecccccccC--CCce-ecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCC
Q 003530 33 FVCPLTKQVM--RDPV-TLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRS 84 (813)
Q Consensus 33 ~~Cpi~~~~m--~dpv-~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~ 84 (813)
.-|-||+.-| .|-+ ++||.|.|-+.||++|+. |.+..||+|+..+++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~-----~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLL-----GYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHh-----hhcccCCccCCCCCC
Confidence 6799999877 4554 589999999999999997 345789999877653
No 174
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.003 Score=60.75 Aligned_cols=35 Identities=40% Similarity=0.557 Sum_probs=32.4
Q ss_pred CceecccccccCCCceecCCCchhcHHHHHHHHHH
Q 003530 31 DAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKE 65 (813)
Q Consensus 31 ~~~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~ 65 (813)
.--+|.+|.+.++|||+.+.||.|||.||.+|+-.
T Consensus 42 ~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred CcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 33689999999999999999999999999999976
No 175
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.25 E-value=0.84 Score=49.14 Aligned_cols=270 Identities=14% Similarity=0.100 Sum_probs=135.9
Q ss_pred cCCHHHHHHHHHHHHHhhC------CcccHHHHHHcCChHHHH------HHHhccCCCCCChhHHHHHHHHHHHHHhcCC
Q 003530 328 SGNMQAREAALKALNQISS------CEPSAKVLIHAGILPPLV------KDLFTVGSNHLPMRLKEVSATILANVVNSGH 395 (813)
Q Consensus 328 ~~~~~~~~~a~~aL~~Ls~------~~~~~~~i~~~g~i~~Lv------~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~ 395 (813)
+..+.++..++..|..+.. .|+..+.-.+.|-+..+. ...-+ ...+..+-.++.++.++...+.
T Consensus 306 ~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YD----s~~~Tl~~s~Cdals~i~~~~f 381 (728)
T KOG4535|consen 306 EADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYD----SEHPTLQASACDALSSILPEAF 381 (728)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhh----hcCCCchhHHHHHHhhcCchhh
Confidence 4577888888888888753 222222222222121111 11111 1235566677777777765432
Q ss_pred CCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHH
Q 003530 396 DFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLR 475 (813)
Q Consensus 396 ~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~ 475 (813)
..-. ++++. -.+--+..+=.+.+.-++..|++++.-+.-++....+.. .-..+...+...+.++.-..|
T Consensus 382 ~~lp----n~~~T----~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~---fv~~aa~~il~sl~d~~ln~r 450 (728)
T KOG4535|consen 382 SNLP----NDRQT----LCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVI---FVADAANAILMSLEDKSLNVR 450 (728)
T ss_pred cCCC----Ccchh----hhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHH---HHHHHHHHHHHHhhhHhHhHH
Confidence 2111 11100 111111122222334466677777777776765322221 112445555666677677889
Q ss_pred HHHHHHHHHhCC----CC--CHHHHHHHhcccccHHHHHHhhhcCCC-ChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcH
Q 003530 476 LASIELIQNLSP----HM--GHELADALRGAVGQLGSLIRVISENVG-ISKEQAAAVGLLAELPERDLGLTRQMLDEGAF 548 (813)
Q Consensus 476 ~~A~~~L~~Ls~----~~--~~~~~~~l~~~~g~i~~Lv~ll~~~~~-~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v 548 (813)
.++.+.+.++++ +. .+...+.+... .+..+++.-...+. .+.++..|...|+|+.. +-+.+.+.+.-
T Consensus 451 ~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~--ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ----vlq~i~~~~~~ 524 (728)
T KOG4535|consen 451 AKAAWSLGNITDALIVNMPTPDSFQERFSGL--LLLKMLRSAIEASADKDKVKSNAVRALGNLLQ----FLQPIEKPTFA 524 (728)
T ss_pred HHHHHHhhhhHHHHHcCCCCchHHHHHHHHH--HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH----HHHHhhhccHH
Confidence 999999999873 12 12233333321 23333333222221 24788888888888743 11111111110
Q ss_pred H----HHHHHhhhhccccccCCccchhhhHhHHHHHHHHhccCCCChHH--HHHHHHcCchHHHHHHHhcCCchHHHHHH
Q 003530 549 G----LIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDA--IALCCEHNLAALFIELLQSNGLDKVQMVS 622 (813)
Q Consensus 549 ~----~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~~~--~~~~~~~~~i~~L~~lL~~~~~~~vk~~A 622 (813)
. .+..++... .-....+++=+++-++.|+.. |+.. +..--.--+.+.|..|+.+.+|..+|.+|
T Consensus 525 e~~~~~~~~l~~~v------~~~~~~kV~WNaCya~gNLfk----n~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~A 594 (728)
T KOG4535|consen 525 EIIEESIQALISTV------LTEAAMKVRWNACYAMGNLFK----NPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRA 594 (728)
T ss_pred HHHHHHHHhcccce------ecccccccchHHHHHHHHhhc----CccccccCCCchHHHHHHHHHHHHHhccceEeehh
Confidence 0 111111110 111234566678888888873 4433 11000113468889999988799999999
Q ss_pred HHHHhh
Q 003530 623 ATALEN 628 (813)
Q Consensus 623 a~aL~~ 628 (813)
|.+|..
T Consensus 595 A~aL~v 600 (728)
T KOG4535|consen 595 AAALSV 600 (728)
T ss_pred hhhhcC
Confidence 999854
No 176
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.0039 Score=59.96 Aligned_cols=53 Identities=26% Similarity=0.585 Sum_probs=46.3
Q ss_pred CceecccccccCCCc----eecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCcc
Q 003530 31 DAFVCPLTKQVMRDP----VTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNP 89 (813)
Q Consensus 31 ~~~~Cpi~~~~m~dp----v~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~~l~p 89 (813)
..|.||+|.+.+.+. |+-||||.|+..|.++.+.. ...||+|+.++.+.++++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~------D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK------DMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc------cccccCCCCcCcccceEe
Confidence 569999999999886 45699999999999999974 378999999999888866
No 177
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.08 E-value=2.3 Score=47.31 Aligned_cols=345 Identities=16% Similarity=0.168 Sum_probs=179.9
Q ss_pred hHHHHHHHccCCH---HHHHHHHHHHHHhcCCchhHHHHHhhhHHHHHHHHhc-----CCHHHHHHHHHHHHHhhCCc-c
Q 003530 279 LQPLLTQILEGPQ---ETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKS-----GNMQAREAALKALNQISSCE-P 349 (813)
Q Consensus 279 i~~Lv~lL~~~~~---~~~~~a~~~L~~L~~~~~~~~~i~~~gi~~Lv~lL~~-----~~~~~~~~a~~aL~~Ls~~~-~ 349 (813)
+|.|+..|.+.+. ...+....+|..++...+.-..+ ++.|+..|.. .+.+.....+.+|.++.... .
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~----~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~ 76 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQILETL----SIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQE 76 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHH----HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccc
Confidence 4677778876654 56677888888888766542222 2344444422 25566777888888776532 2
Q ss_pred c-----HHHHHHcCChHHHHHHHhccCCCCCC--hhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhh
Q 003530 350 S-----AKVLIHAGILPPLVKDLFTVGSNHLP--MRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLI 422 (813)
Q Consensus 350 ~-----~~~i~~~g~i~~Lv~lL~~~~~~~~~--~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL 422 (813)
. .....+...++.+.++.......... ..+-+.+..++..+.+.-+.. .....+..+..++
T Consensus 77 ~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~------------~q~~~~~~~~~lf 144 (415)
T PF12460_consen 77 DKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPE------------KQQEILDELYSLF 144 (415)
T ss_pred ccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHH------------HHHHHHHHHHHHH
Confidence 2 22334445888888887654322111 344444555555444432211 1123345555544
Q ss_pred c----------CCC--hHHHHH----HHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCC-ChHHHHHHHHHHHHh
Q 003530 423 S----------NTG--PTIECK----LLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP-QNDLRLASIELIQNL 485 (813)
Q Consensus 423 ~----------~~~--~~~~~~----a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~~L~~L 485 (813)
. ..+ ...+.. ...+++.+-.+-.. .... ..++.++.+..+. ++..+..++++++.|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~-~~~~------~ll~~l~~~~~~~~~~~~~~~~~~~la~L 217 (415)
T PF12460_consen 145 LSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSL-PDLE------ELLQSLLNLALSSEDEFSRLAALQLLASL 217 (415)
T ss_pred ccccccCCCCccccccccccccHHHHHHHHHHcCCcccCc-cCHH------HHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3 111 011222 23333444333110 0111 1356667765554 467888899999988
Q ss_pred CCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCC-----CCCHHHHHHHHhcCcHHHHHHHhhhhcc
Q 003530 486 SPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELP-----ERDLGLTRQMLDEGAFGLIFSRVKSIQL 560 (813)
Q Consensus 486 s~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~-----~~~~~~~~~l~~~g~v~~L~~lL~~~~~ 560 (813)
......+ +.+. ..+..+..-+.+... ...+..+..++..+. .+++.- . ..+..|+++|.+
T Consensus 218 vNK~~~~--~~l~---~~l~~~~~~~~~~~~-~~~~~~~~~~~~Wi~KaLv~R~~~~~-~-----~~~~~L~~lL~~--- 282 (415)
T PF12460_consen 218 VNKWPDD--DDLD---EFLDSLLQSISSSED-SELRPQALEILIWITKALVMRGHPLA-T-----ELLDKLLELLSS--- 282 (415)
T ss_pred HcCCCCh--hhHH---HHHHHHHhhhcccCC-cchhHHHHHHHHHHHHHHHHcCCchH-H-----HHHHHHHHHhCC---
Confidence 8432221 1111 233333333311111 233444433333222 222221 1 234556777665
Q ss_pred ccccCCccchhhhHhHHHHHHHHhccCCCC-hHH-------------HHHHHHcCchHHHHHHHhcCCchHHHHHHHHHH
Q 003530 561 GETRGSRFVTPFLEGLLSVLARVTFVLSDE-PDA-------------IALCCEHNLAALFIELLQSNGLDKVQMVSATAL 626 (813)
Q Consensus 561 ~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~-~~~-------------~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL 626 (813)
+.+...++.++.-+.. | ++. ++.+. ..++|.|++-.+.. +...|..--.||
T Consensus 283 ---------~~~g~~aA~~f~il~~----d~~~~l~~~~~a~vklLykQR~F-~~~~p~L~~~~~~~-~~~~k~~yL~AL 347 (415)
T PF12460_consen 283 ---------PELGQQAAKAFGILLS----DSDDVLNKENHANVKLLYKQRFF-TQVLPKLLEGFKEA-DDEIKSNYLTAL 347 (415)
T ss_pred ---------hhhHHHHHHHHhhHhc----CcHHhcCccccchhhhHHhHHHH-HHHHHHHHHHHhhc-ChhhHHHHHHHH
Confidence 2233444444444431 2 221 12221 34577888777777 666888888888
Q ss_pred hhhccccccccCCCCCCCCCCCcccccccccCCCCCCCCcccccccCccccchhhhccchHHHHHhhccCchhHHHHHHH
Q 003530 627 ENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLA 706 (813)
Q Consensus 627 ~~ls~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gai~~Lv~lL~~~~~~v~~~A~~ 706 (813)
.++-.+.+.-.-. .--..-+|.|++.|+.+|.+++.+++.
T Consensus 348 s~ll~~vP~~vl~----------------------------------------~~l~~LlPLLlqsL~~~~~~v~~s~L~ 387 (415)
T PF12460_consen 348 SHLLKNVPKSVLL----------------------------------------PELPTLLPLLLQSLSLPDADVLLSSLE 387 (415)
T ss_pred HHHHhhCCHHHHH----------------------------------------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 8876654311000 001347888999999999999999999
Q ss_pred HHHhhhhcCc
Q 003530 707 ALSTVIDDGV 716 (813)
Q Consensus 707 AL~~L~~~~~ 716 (813)
+|..+..+..
T Consensus 388 tL~~~l~~~~ 397 (415)
T PF12460_consen 388 TLKMILEEAP 397 (415)
T ss_pred HHHHHHHcCH
Confidence 9999997754
No 178
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.07 E-value=0.0047 Score=63.50 Aligned_cols=52 Identities=21% Similarity=0.442 Sum_probs=41.4
Q ss_pred CCceecccccccCCC--ce--ecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCc
Q 003530 30 YDAFVCPLTKQVMRD--PV--TLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLN 88 (813)
Q Consensus 30 ~~~~~Cpi~~~~m~d--pv--~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~~l~ 88 (813)
...|.||||+..|.. +. +.+|||.|...+|.+-- . ...||+|+++|...+++
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~------~~~Cp~c~~~f~~~DiI 166 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-K------SKKCPVCGKPFTEEDII 166 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-c------cccccccCCccccCCEE
Confidence 456999999999954 32 36999999999998884 2 25799999999877653
No 179
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.03 E-value=0.29 Score=45.41 Aligned_cols=124 Identities=15% Similarity=0.233 Sum_probs=96.5
Q ss_pred HHHHHHcCChHHHHHHHhccCC-CCCChhHHHHHHHHHHHHHhcCC-CCcccccCCCCccccchhhHHHHHHhhcCC--C
Q 003530 351 AKVLIHAGILPPLVKDLFTVGS-NHLPMRLKEVSATILANVVNSGH-DFDSITVGPDNQTLVSEDIVHNLLHLISNT--G 426 (813)
Q Consensus 351 ~~~i~~~g~i~~Lv~lL~~~~~-~~~~~~~~~~a~~~L~nL~~~~~-~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~--~ 426 (813)
...++..||+..|++++.+... ..+..++...++.++..|..++. .|+ ..+..+|...+..++.. +
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd----------~l~~~FI~Kia~~Vn~~~~d 73 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD----------TLSDSFIKKIASYVNSSAMD 73 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh----------hccHHHHHHHHHHHcccccc
Confidence 3567889999999999987541 11124667788899999988765 564 34577888888888743 6
Q ss_pred hHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCC
Q 003530 427 PTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSP 487 (813)
Q Consensus 427 ~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~ 487 (813)
+.+.+.++..|-++..++. ..-..+.++=-++.|+..|..++++++.+|..++-.|-.
T Consensus 74 ~~i~q~sLaILEs~Vl~S~---~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 74 ASILQRSLAILESIVLNSP---KLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL 131 (160)
T ss_pred chHHHHHHHHHHHHHhCCH---HHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 8899999999999988765 344556667789999999999999999999988877763
No 180
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.01 E-value=0.49 Score=50.32 Aligned_cols=198 Identities=15% Similarity=0.132 Sum_probs=143.0
Q ss_pred ccccCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhh-----hhhcC--CCHHHHHHHhccCcHHHHHHHHHHHHH
Q 003530 146 VHNSELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKE-----ILGQG--DTVRTIVKFLSHELSREREEAVSLLYE 218 (813)
Q Consensus 146 i~~~g~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~-----~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 218 (813)
+...|.+..|+..|..-+.+.+..+..+..++.......+. .+... ..+..|++- .++++.--.+-..|+.
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~g--y~~~dial~~g~mlRe 149 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRG--YENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHG--GGSTTTHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHH--hcCccccchHHHHHHH
Confidence 44567888999999888999999999999998776544432 22221 222222222 2345566777889999
Q ss_pred hhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhh-ccCCccHHHHHHc---CChHHHHHHHccCCHHHH
Q 003530 219 LSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANL-EKCENNVRQMAEN---GRLQPLLTQILEGPQETK 294 (813)
Q Consensus 219 ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L-~~~~~~~~~i~~~---G~i~~Lv~lL~~~~~~~~ 294 (813)
+.+++...+.+.. ...+-.+.+... .++-++...|..++..+ ..++.-....... ..+...-.+|.+++--++
T Consensus 150 c~k~e~l~~~iL~-~~~f~~ff~~~~--~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 150 CIKHESLAKIILY-SECFWKFFKYVQ--LPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HTTSHHHHHHHHT-SGGGGGHHHHTT--SSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHhhHHHHHHHhC-cHHHHHHHHHhc--CCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 9999988888875 567778888888 78999999999999987 4454444444433 245577788999999999
Q ss_pred HHHHHHHHHhcCCchhHHHHHhh-----hHHHHHHHHhcCCHHHHHHHHHHHHHhhCCc
Q 003530 295 LSLAAFLGDLALNSDVKVLVART-----VGSCLINIMKSGNMQAREAALKALNQISSCE 348 (813)
Q Consensus 295 ~~a~~~L~~L~~~~~~~~~i~~~-----gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~ 348 (813)
..+...|+.+-.+..|...+... -+..++.+|++.+..++..|..+..-...+|
T Consensus 227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 99999999999998887666553 2788889999999999999999988777665
No 181
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.95 E-value=0.0023 Score=67.26 Aligned_cols=40 Identities=23% Similarity=0.586 Sum_probs=35.3
Q ss_pred eecccccccCCCce----ecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCc
Q 003530 33 FVCPLTKQVMRDPV----TLENGQTFEREAIEKWFKECRENGRKPVCPLTQK 80 (813)
Q Consensus 33 ~~Cpi~~~~m~dpv----~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~ 80 (813)
-+||+|++-|.+-| ++.|.|+|--.|+.+|+. .+||+|+-
T Consensus 176 PTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--------~scpvcR~ 219 (493)
T KOG0804|consen 176 PTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--------SSCPVCRY 219 (493)
T ss_pred CCcchhHhhcCccccceeeeecccccchHHHhhccc--------CcChhhhh
Confidence 58999999997775 589999999999999985 58999974
No 182
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.94 E-value=0.17 Score=46.85 Aligned_cols=129 Identities=13% Similarity=0.145 Sum_probs=98.3
Q ss_pred hhhcCCCHHHHHHHhccCcH------HHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHH
Q 003530 187 ILGQGDTVRTIVKFLSHELS------REREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTL 260 (813)
Q Consensus 187 ~i~~~g~i~~Lv~lL~~~~~------~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L 260 (813)
.+...||+..|++++.++.. +....++.++.+|-.+........ ....|...+..++.+..+..+...+..+|
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l-~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTL-SDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhc-cHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 45667899999999988763 567788888899888876555554 35678888888875445789999999999
Q ss_pred HhhccCCccHHHHH-HcCChHHHHHHHccCCHHHHHHHHHHHHHhcC--CchhHHHHHh
Q 003530 261 ANLEKCENNVRQMA-ENGRLQPLLTQILEGPQETKLSLAAFLGDLAL--NSDVKVLVAR 316 (813)
Q Consensus 261 ~~L~~~~~~~~~i~-~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~--~~~~~~~i~~ 316 (813)
.++..++......+ +.=-++.|+.+|+..+++++.++...+-.|-. +++.|..+.+
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~ 143 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIAE 143 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 99987776654444 55689999999999999999999988888765 2333444443
No 183
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.91 E-value=0.41 Score=47.07 Aligned_cols=150 Identities=12% Similarity=0.103 Sum_probs=108.9
Q ss_pred cHHHHHHHHHHHhhcCCcccccccccCcHHHHHHHhc-----CCCHHHHHHHHHHHHHhhccCc-chhhhhhcCCCHHHH
Q 003530 124 DIMPALKYVQYFCQSSRSNKHVVHNSELIPMIIDMLK-----SSSRKVRCTALETLRIVVEEDD-DNKEILGQGDTVRTI 197 (813)
Q Consensus 124 ~~~~al~~l~~l~~~~~~~r~~i~~~g~i~~Lv~lL~-----s~~~~~~~~al~~L~~L~~~~~-~~~~~i~~~g~i~~L 197 (813)
.+..++.-+|-.+. .++-|..+.++..---|-.+|. .+.+-.|..++.+++.|.+.++ +....+...+.||..
T Consensus 95 RVcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 95 RVCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred hHHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 34456666666654 5666777777775544555553 2456789999999999987654 456677889999999
Q ss_pred HHHhccCcHHHHHHHHHHHHHhhcCchhHhHH-------hhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccH
Q 003530 198 VKFLSHELSREREEAVSLLYELSKSEALCEKI-------GSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNV 270 (813)
Q Consensus 198 v~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i-------~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~ 270 (813)
++.+..|+...+..|+..+..+-.++..-..| ....-.+..++.-+.. .+++.+.++++.+..+|+.++..+
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~-~ps~RllKhviRcYlrLsdnprar 252 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVS-MPSPRLLKHVIRCYLRLSDNPRAR 252 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999988887544333 2222344444443332 688899999999999999998777
Q ss_pred HHHHH
Q 003530 271 RQMAE 275 (813)
Q Consensus 271 ~~i~~ 275 (813)
..+..
T Consensus 253 ~aL~~ 257 (293)
T KOG3036|consen 253 AALRS 257 (293)
T ss_pred HHHHh
Confidence 76664
No 184
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.90 E-value=0.018 Score=43.45 Aligned_cols=55 Identities=24% Similarity=0.190 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcC
Q 003530 472 NDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAEL 531 (813)
Q Consensus 472 ~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L 531 (813)
+.+|..|+++|..++..........+. ..++.|+.+|.++++ ++|..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~---~~~~~L~~~L~d~~~--~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLP---ELLPALIPLLQDDDD--SVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHH---HHHHHHHHHTTSSSH--HHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHH---HHHHHHHHHHcCCCH--HHHHHHHHHHhcC
Confidence 468999999999988765555444333 589999999988875 9999999999875
No 185
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.90 E-value=0.45 Score=56.78 Aligned_cols=283 Identities=16% Similarity=0.074 Sum_probs=164.0
Q ss_pred CCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcC----chhHhHHhhhhchHH
Q 003530 162 SSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKS----EALCEKIGSINGAIL 237 (813)
Q Consensus 162 ~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~----~~~~~~i~~~~g~i~ 237 (813)
.....+.+|+..|..++..-.+ ...-...+|-++.++.++..++|..|+.+|..+-.. +..-..|+. .-.+|
T Consensus 435 k~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~-eYlfP 510 (1431)
T KOG1240|consen 435 KTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFP-EYLFP 510 (1431)
T ss_pred hcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhH-hhhhh
Confidence 3456788999999988764311 112235699999999999999999999999877432 223334442 35788
Q ss_pred HHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhHHHHHhh
Q 003530 238 ILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVART 317 (813)
Q Consensus 238 ~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~ 317 (813)
.|-.++.+ +....++..-+..|..|+..- ..+.+.+--.....++++.+.+ ...+. ..+.....+..
T Consensus 511 ~L~~l~~d-~~~~~vRiayAsnla~LA~tA---~rFle~~q~~~~~g~~n~~nse-------t~~~~-~~~~~~~~L~~- 577 (1431)
T KOG1240|consen 511 HLNHLLND-SSAQIVRIAYASNLAQLAKTA---YRFLELTQELRQAGMLNDPNSE-------TAPEQ-NYNTELQALHH- 577 (1431)
T ss_pred hhHhhhcc-CccceehhhHHhhHHHHHHHH---HHHHHHHHHHHhcccccCcccc-------ccccc-ccchHHHHHHH-
Confidence 88888872 234444444455555543211 1111111001111112222221 00000 01111222222
Q ss_pred hH-HHHHHHHhcCCHHHHHHHHHHHHHhhCCc---ccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q 003530 318 VG-SCLINIMKSGNMQAREAALKALNQISSCE---PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNS 393 (813)
Q Consensus 318 gi-~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~---~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~ 393 (813)
+| ...+.+|.++.+-+++.-+..|.-||..- .+-+. .++.|+..|++. +..++-.-...+.-++..
T Consensus 578 ~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~-----iLshLiTfLNDk-----Dw~LR~aFfdsI~gvsi~ 647 (1431)
T KOG1240|consen 578 TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDV-----ILSHLITFLNDK-----DWRLRGAFFDSIVGVSIF 647 (1431)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccc-----hHHHHHHHhcCc-----cHHHHHHHHhhccceEEE
Confidence 24 44455677667778888888888888621 11111 567788888763 345443333333222221
Q ss_pred CCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChH
Q 003530 394 GHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQND 473 (813)
Q Consensus 394 ~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 473 (813)
- ++ .-.+++.+|-|.+-|.++.+.+..+|+++|..|++...-....... .++....+|-.++.=
T Consensus 648 V-G~----------rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~-----i~~~v~PlL~hPN~W 711 (1431)
T KOG1240|consen 648 V-GW----------RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKD-----ILQDVLPLLCHPNLW 711 (1431)
T ss_pred E-ee----------eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHH-----HHHhhhhheeCchHH
Confidence 1 11 1245788898888999999999999999999998875422122222 256667788889999
Q ss_pred HHHHHHHHHHHhCC
Q 003530 474 LRLASIELIQNLSP 487 (813)
Q Consensus 474 v~~~A~~~L~~Ls~ 487 (813)
+|+.++..+...+.
T Consensus 712 IR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 712 IRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999988776663
No 186
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.88 E-value=0.74 Score=44.48 Aligned_cols=111 Identities=18% Similarity=0.164 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchH-HHHHH
Q 003530 163 SRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIGSINGAI-LILVG 241 (813)
Q Consensus 163 ~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i-~~Lv~ 241 (813)
++.+|..++.+++.|+..-+. ++ ...+|.+...|+++++.+|+.|+.+|.+|...+-.+ ..|-+ ..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik-----~k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LV-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK-----VKGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HH-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee-----ehhhhhHHHHH
Confidence 478899999999999876532 22 245889999999999999999999999997654322 22333 66677
Q ss_pred hcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHcc
Q 003530 242 MTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILE 288 (813)
Q Consensus 242 lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~ 288 (813)
++. +++++++..|..++..+.... +...+. ..++.++..|..
T Consensus 71 ~l~--D~~~~Ir~~A~~~~~e~~~~~-~~~~i~--~~~~e~i~~l~~ 112 (178)
T PF12717_consen 71 LLV--DENPEIRSLARSFFSELLKKR-NPNIIY--NNFPELISSLNN 112 (178)
T ss_pred HHc--CCCHHHHHHHHHHHHHHHHhc-cchHHH--HHHHHHHHHHhC
Confidence 777 899999999999999986542 111121 245555555554
No 187
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.0063 Score=62.14 Aligned_cols=48 Identities=17% Similarity=0.518 Sum_probs=39.7
Q ss_pred CCCceecccccccCCCc-------------eecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCC
Q 003530 29 IYDAFVCPLTKQVMRDP-------------VTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKEL 82 (813)
Q Consensus 29 ~~~~~~Cpi~~~~m~dp-------------v~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l 82 (813)
..++-+|-||++-|-.| =-+||||.+--+|++.|++. .-+||.|+.++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER------qQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER------QQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh------ccCCCcccCcc
Confidence 34568999999986333 56999999999999999997 36999999874
No 188
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.85 E-value=0.029 Score=42.26 Aligned_cols=54 Identities=22% Similarity=0.215 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhcCCc-hhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 003530 291 QETKLSLAAFLGDLALNS-DVKVLVARTVGSCLINIMKSGNMQAREAALKALNQI 344 (813)
Q Consensus 291 ~~~~~~a~~~L~~L~~~~-~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~L 344 (813)
+.+|..++.+|++++... +.-.......++.|+.+|.++++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 357899999999988643 333334444589999999999999999999999875
No 189
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=95.83 E-value=0.0035 Score=65.01 Aligned_cols=34 Identities=15% Similarity=0.428 Sum_probs=30.2
Q ss_pred CceecccccccCCCceecCCCchhcHHHHHHHHH
Q 003530 31 DAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFK 64 (813)
Q Consensus 31 ~~~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~ 64 (813)
+++.||||+..|+||++++|||++||.|-..-..
T Consensus 3 eelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 3 EELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred ccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 5799999999999999999999999999765544
No 190
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.0065 Score=60.67 Aligned_cols=51 Identities=22% Similarity=0.227 Sum_probs=42.4
Q ss_pred CCceecccccccCCCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCC
Q 003530 30 YDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRST 85 (813)
Q Consensus 30 ~~~~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~ 85 (813)
...-.||||..-|.-||.++|+|.||.-||+--... + ..+||+|+.++.+.
T Consensus 5 ~~~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~n----d-k~~CavCR~pids~ 55 (324)
T KOG0824|consen 5 TKKKECLICYNTGNCPVNLYCFHKFCYICIKGSYKN----D-KKTCAVCRFPIDST 55 (324)
T ss_pred ccCCcceeeeccCCcCccccccchhhhhhhcchhhc----C-CCCCceecCCCCcc
Confidence 344679999999999999999999999999865542 4 38899999988543
No 191
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.74 E-value=1.1 Score=47.77 Aligned_cols=227 Identities=11% Similarity=0.160 Sum_probs=154.8
Q ss_pred HHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc-hhHH-----HHHhhhHHHHHHHHhc--CCHHHHHHHHHHHH
Q 003530 271 RQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNS-DVKV-----LVARTVGSCLINIMKS--GNMQAREAALKALN 342 (813)
Q Consensus 271 ~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~-----~i~~~gi~~Lv~lL~~--~~~~~~~~a~~aL~ 342 (813)
..+.+.+.+..|+..|..-+-+.+..++.+..++.... +.+. .+... -|.++..|-. +++++.-.+...|+
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~~~dial~~g~mlR 148 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYENPDIALNCGDMLR 148 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhcCccccchHHHHHH
Confidence 45667799999999999999999999999999987632 2322 23222 2444454432 46778888899999
Q ss_pred HhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCcccc--chhhHHHHHH
Q 003530 343 QISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLV--SEDIVHNLLH 420 (813)
Q Consensus 343 ~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~--~~~~v~~Lv~ 420 (813)
....++...+.+.....+..+.+.+... +-++-..|..++.-+-........ ..+. -..++..+-.
T Consensus 149 ec~k~e~l~~~iL~~~~f~~ff~~~~~~-----~Fdiasdaf~t~~~llt~hk~~~a-------~fl~~n~d~ff~~~~~ 216 (335)
T PF08569_consen 149 ECIKHESLAKIILYSECFWKFFKYVQLP-----NFDIASDAFSTFKELLTRHKKLVA-------EFLSNNYDRFFQKYNK 216 (335)
T ss_dssp HHTTSHHHHHHHHTSGGGGGHHHHTTSS-----SHHHHHHHHHHHHHHHHSSHHHHH-------HHHHHTHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhCcHHHHHHHHHhcCC-----ccHhHHHHHHHHHHHHhccHHHHH-------HHHHHHHHHHHHHHHH
Confidence 9888888888888888888888887754 478888888888876554221110 0011 1245567778
Q ss_pred hhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhC--CCCCHHHHHHHh
Q 003530 421 LISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLS--PHMGHELADALR 498 (813)
Q Consensus 421 lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls--~~~~~~~~~~l~ 498 (813)
||.+++.-+|++++..|..+-.++.+..-+.+-+.+..-+..++.+|++++..+|..|-..+.... ++.+..+.+.+.
T Consensus 217 Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~ 296 (335)
T PF08569_consen 217 LLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILI 296 (335)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHH
T ss_pred HccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHH
Confidence 999999999999999999999887765555555555566778899999999999999998887766 445666665554
Q ss_pred cccccHHHHHHhhhc
Q 003530 499 GAVGQLGSLIRVISE 513 (813)
Q Consensus 499 ~~~g~i~~Lv~ll~~ 513 (813)
.. =..|++.+.+
T Consensus 297 ~N---r~kLl~fl~~ 308 (335)
T PF08569_consen 297 KN---REKLLRFLKD 308 (335)
T ss_dssp HT---HHHHHHHHHT
T ss_pred HH---HHHHHHHHHh
Confidence 33 1345555543
No 192
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.71 E-value=0.019 Score=48.99 Aligned_cols=65 Identities=18% Similarity=0.329 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhcCCcccccccccCcHHHHHHHh--cCCCHHHHHHHHHHHHHhhccCcchhhhhhcC
Q 003530 127 PALKYVQYFCQSSRSNKHVVHNSELIPMIIDML--KSSSRKVRCTALETLRIVVEEDDDNKEILGQG 191 (813)
Q Consensus 127 ~al~~l~~l~~~~~~~r~~i~~~g~i~~Lv~lL--~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~ 191 (813)
..++-|.++|.+++.++..+.+.|++|.++..- ...+|-+++.|+.++++|+.++++|++.|.+-
T Consensus 5 ~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 5 DLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 346678899999999999999999999998875 45689999999999999999999999987653
No 193
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.69 E-value=1.1 Score=44.15 Aligned_cols=148 Identities=11% Similarity=0.057 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhccc---CCCCHHHHHHHHHHHHhhccCCcc--HHHHHHcCChHHH
Q 003530 208 EREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSS---KSENLLTVEKAEKTLANLEKCENN--VRQMAENGRLQPL 282 (813)
Q Consensus 208 ~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~---~s~~~~~~~~a~~~L~~L~~~~~~--~~~i~~~G~i~~L 282 (813)
-..+|...|.-++.+++.|..+.+ +..---|-.+|.. ....+-.+-.+.+++..|.++++. ...+...++||..
T Consensus 95 RVcnaL~LlQcvASHpdTr~~FL~-A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 95 RVCNALALLQCVASHPDTRRAFLR-AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred hHHHHHHHHHHHhcCcchHHHHHH-ccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 357888889999999999988864 2222223333332 134566788889999999765443 3456688999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHhcCCchhHHHHHhh-------h--H-HHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHH
Q 003530 283 LTQILEGPQETKLSLAAFLGDLALNSDVKVLVART-------V--G-SCLINIMKSGNMQAREAALKALNQISSCEPSAK 352 (813)
Q Consensus 283 v~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~-------g--i-~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~ 352 (813)
++.+..|++..+.-|..++..+-.++.+-..+... + + ..+.++.+.++..+..+++++..+|+.++..|.
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~ 253 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARA 253 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999988765555442 1 2 333445566899999999999999999998777
Q ss_pred HHHH
Q 003530 353 VLIH 356 (813)
Q Consensus 353 ~i~~ 356 (813)
.+..
T Consensus 254 aL~~ 257 (293)
T KOG3036|consen 254 ALRS 257 (293)
T ss_pred HHHh
Confidence 6543
No 194
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.0054 Score=59.89 Aligned_cols=54 Identities=22% Similarity=0.428 Sum_probs=44.3
Q ss_pred cCCCCCceecccccccCCCce----------ecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCC
Q 003530 26 IEPIYDAFVCPLTKQVMRDPV----------TLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELR 83 (813)
Q Consensus 26 ~~~~~~~~~Cpi~~~~m~dpv----------~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~ 83 (813)
|..-.++-.|-+|++-+.+.| .++|||.|---||.-|+-- |.+.|||-|++.+.
T Consensus 218 Ptkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWciv----GKkqtCPYCKekVd 281 (328)
T KOG1734|consen 218 PTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIV----GKKQTCPYCKEKVD 281 (328)
T ss_pred CCCCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheee----cCCCCCchHHHHhh
Confidence 444456788999998886655 6999999999999999985 76789999998654
No 195
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.58 E-value=0.042 Score=46.87 Aligned_cols=71 Identities=14% Similarity=0.210 Sum_probs=51.2
Q ss_pred ccchHHHHHhhccCchhHHHHHHHHHHhhhhcCcchhhHHHHHHhhcCcHHHHHHHhhcCChHHHHHHHHHHHHHHc
Q 003530 683 GHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILR 759 (813)
Q Consensus 683 ~gai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~~a~~aL~~i~~ 759 (813)
..-++|++.++.++|..||.+|+++|.+++.... +...-.-....+.|.+++ ...++++|..| +.|.++++
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~----~~~l~~f~~IF~~L~kl~-~D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVAR----GEILPYFNEIFDALCKLS-ADPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-cCCchhHHHHH-HHHHHHhc
Confidence 3478999999999999999999999999985421 111112334556677777 47778887554 77877764
No 196
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.72 Score=56.52 Aligned_cols=183 Identities=14% Similarity=0.099 Sum_probs=101.6
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCC-chHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCC-C
Q 003530 412 EDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPT-TVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPH-M 489 (813)
Q Consensus 412 ~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~-~ 489 (813)
...||.|.+.=.++++.+|.....+.-.|..++. ..++....| .+-|+.-|.+..=++|+.+|-+|..|-.. .
T Consensus 997 ~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neI-----l~eLL~~lt~kewRVReasclAL~dLl~g~~ 1071 (1702)
T KOG0915|consen 997 KKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEI-----LDELLVNLTSKEWRVREASCLALADLLQGRP 1071 (1702)
T ss_pred HHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHH-----HHHHHHhccchhHHHHHHHHHHHHHHHcCCC
Confidence 3567777777778899999888888777877743 333444433 55666666666668999999999888743 3
Q ss_pred CHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHH---HHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhhhccccccCC
Q 003530 490 GHELADALRGAVGQLGSLIRVISENVGISKEQAAA---VGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGS 566 (813)
Q Consensus 490 ~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a---~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~ 566 (813)
...+.+.+. ..+..+.+.+.+=.. .+|.+| +.+|+.|+-..-+...-.....++..++.+|-+. |..
T Consensus 1072 ~~~~~e~lp---elw~~~fRvmDDIKE--sVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~--gim--- 1141 (1702)
T KOG0915|consen 1072 FDQVKEKLP---ELWEAAFRVMDDIKE--SVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDE--GIM--- 1141 (1702)
T ss_pred hHHHHHHHH---HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhcc--Ccc---
Confidence 344444544 356666666655543 566654 4455544311100001111112233444444331 211
Q ss_pred ccchhhhHhHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHHhcC
Q 003530 567 RFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSN 613 (813)
Q Consensus 567 ~~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~~i~~L~~lL~~~ 613 (813)
+..+++...+++++..++.. .+...+ .--...||.|......-
T Consensus 1142 s~v~evr~~si~tl~dl~Ks---sg~~lk-P~~~~LIp~ll~~~s~l 1184 (1702)
T KOG0915|consen 1142 SKVNEVRRFSIGTLMDLAKS---SGKELK-PHFPKLIPLLLNAYSEL 1184 (1702)
T ss_pred cchHHHHHHHHHHHHHHHHh---chhhhc-chhhHHHHHHHHHcccc
Confidence 24566666777777777743 222111 11134566666665554
No 197
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.47 E-value=7.3 Score=46.39 Aligned_cols=218 Identities=15% Similarity=0.187 Sum_probs=119.8
Q ss_pred hHHHHHHHHhc-----CCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhcc---CCCCCChhHHHHHHHHHHH
Q 003530 318 VGSCLINIMKS-----GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTV---GSNHLPMRLKEVSATILAN 389 (813)
Q Consensus 318 gi~~Lv~lL~~-----~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~~~~~~a~~~L~n 389 (813)
|+..|+.++.+ .........+..|...+.-+.||+.+++.|+++.|++.+... ..+.....+-+.-+.++-.
T Consensus 118 GL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ 197 (802)
T PF13764_consen 118 GLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIES 197 (802)
T ss_pred CHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHH
Confidence 45666666543 233455566677777777889999999999999999988622 1111225666666666666
Q ss_pred HHhcCCCCcccccCCCCccc-----cchhhHHHHHHhhcC----CChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCH
Q 003530 390 VVNSGHDFDSITVGPDNQTL-----VSEDIVHNLLHLISN----TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGAT 460 (813)
Q Consensus 390 L~~~~~~~~~~~~~~~~~~l-----~~~~~v~~Lv~lL~~----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i 460 (813)
|....... ........... ....-+..|++.+.+ .++.+....+++|-.|+.+.. +....+ +
T Consensus 198 ll~ea~~~-~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~---e~m~~L-----v 268 (802)
T PF13764_consen 198 LLSEANSS-SSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNE---EKMDAL-----V 268 (802)
T ss_pred HHHHHhhh-hhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCH---HHHHHH-----H
Confidence 55432211 00000000000 123447777777764 368888999999999998865 222222 3
Q ss_pred HHHHHhhhCCC------hHHHHHHHHHHHHhC-----CCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHh
Q 003530 461 ISLVQFVEAPQ------NDLRLASIELIQNLS-----PHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLA 529 (813)
Q Consensus 461 ~~Lv~lL~~~~------~~v~~~A~~~L~~Ls-----~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~ 529 (813)
..+-+.++-.. ++-+ .-+.+++.++ ...+..+.+.+.+. |.+...++.|...-+ .. .
T Consensus 269 ~~F~p~l~f~~~D~~~~~~~~-~~Le~F~~i~~~I~~~~~G~~LK~~Il~~-GIv~~a~~YL~~~~P--~~--------~ 336 (802)
T PF13764_consen 269 EHFKPYLDFDKFDEEHSPDEQ-FKLECFCEIAEGIPNNSNGNRLKDKILES-GIVQDAIDYLLKHFP--SL--------K 336 (802)
T ss_pred HHHHHhcChhhcccccCchHH-HHHHHHHHHHhcCCCCCchHHHHHHHHHh-hHHHHHHHHHHHhCc--cc--------c
Confidence 34433332211 1111 1233444443 22355667777776 888877777766554 11 1
Q ss_pred cCCCCCHHHHHHHHhcCcHHHHHHHhhhhc
Q 003530 530 ELPERDLGLTRQMLDEGAFGLIFSRVKSIQ 559 (813)
Q Consensus 530 ~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~ 559 (813)
...+++.++. .+.-++|.++.+|....
T Consensus 337 --~~~s~eWk~~-l~~psLp~iL~lL~GLa 363 (802)
T PF13764_consen 337 --NTDSPEWKEF-LSRPSLPYILRLLRGLA 363 (802)
T ss_pred --cCCCHHHHHH-hcCCcHHHHHHHHHHHH
Confidence 1134455333 33556666666666543
No 198
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.37 E-value=1.6 Score=46.13 Aligned_cols=186 Identities=19% Similarity=0.127 Sum_probs=111.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhc--CCCHHHHHHHhccCcHHHHHHHHHHHHHhhcC---chhHhHH
Q 003530 155 IIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQ--GDTVRTIVKFLSHELSREREEAVSLLYELSKS---EALCEKI 229 (813)
Q Consensus 155 Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~---~~~~~~i 229 (813)
.+..+.......|..++..+.++..... .-+.+.. .-.+..+.+.++.+..+.+..|+.++.-++.. ......+
T Consensus 48 ~Id~l~eK~~~~Re~aL~~l~~~l~~~~-~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 48 AIDLLTEKSSSTREAALEALIRALSSRY-LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 3444555667888888888888765442 2222222 23477888889988888888888877777654 2445555
Q ss_pred hhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhc---c-CCccHHHHHHcCChH--HHHHHHccC----------CHHH
Q 003530 230 GSINGAILILVGMTSSKSENLLTVEKAEKTLANLE---K-CENNVRQMAENGRLQ--PLLTQILEG----------PQET 293 (813)
Q Consensus 230 ~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~---~-~~~~~~~i~~~G~i~--~Lv~lL~~~----------~~~~ 293 (813)
. ....|.|.+.+...+..+.++..++.+|.-++ . ..+......+ .++ .....++.+ ++.+
T Consensus 127 ~--~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l 202 (309)
T PF05004_consen 127 F--EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAAL 202 (309)
T ss_pred H--HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHH
Confidence 4 36788999998854555666666666665542 2 2222221111 111 111112211 2456
Q ss_pred HHHHHHHHHHhcC-Cchh-HHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 003530 294 KLSLAAFLGDLAL-NSDV-KVLVARTVGSCLINIMKSGNMQAREAALKALNQIS 345 (813)
Q Consensus 294 ~~~a~~~L~~L~~-~~~~-~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls 345 (813)
...|..+-+-|.. -+.. -....+..++.|+.+|.+.+.+++.+|..+|.-|-
T Consensus 203 ~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 203 VAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 6666655555543 2331 22333445899999999999999999998887653
No 199
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.34 E-value=1.6 Score=50.40 Aligned_cols=243 Identities=15% Similarity=-0.001 Sum_probs=138.8
Q ss_pred CcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCC
Q 003530 347 CEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTG 426 (813)
Q Consensus 347 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~ 426 (813)
...-+...++.|+...|+++..... +..+.....+|. +.- .+. . -....+++++...+.+..
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~-----e~akl~~~~aL~--~~i-----~f~--~----~~~~~v~~~~~s~~~~d~ 554 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQF-----EEAKLKWYHALA--GKI-----DFP--G----ERSYEVVKPLDSALHNDE 554 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhc-----hHHHHHHHHHHh--hhc-----CCC--C----CchhhhhhhhcchhhhhH
Confidence 4456667788999999999988653 677878888886 111 110 0 112456666666665432
Q ss_pred -hHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHH
Q 003530 427 -PTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLG 505 (813)
Q Consensus 427 -~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~ 505 (813)
-.-....+.++.||++.+. ..+..+.+.-++..+-.++...++..|+.+..++.||.-+ +.-+...+.+....++
T Consensus 555 ~~~en~E~L~altnLas~s~---s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~-~~~~e~si~e~~~~l~ 630 (748)
T KOG4151|consen 555 KGLENFEALEALTNLASISE---SDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWS-PLLYERSIVEYKDRLK 630 (748)
T ss_pred HHHHHHHHHHHhhcccCcch---hhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhh-HHHHHHHhhccccCch
Confidence 2223457888899988765 3344466666677777788888999999999999999842 2222222333213444
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHH-HHHhcCcHHHHHHHhhhhccccccCCccchhhhHhHHHHHHHHh
Q 003530 506 SLIRVISENVGISKEQAAAVGLLAELPERDLGLTR-QMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVT 584 (813)
Q Consensus 506 ~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~-~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~ 584 (813)
.....+.... +....++++++.-+......... .+.-......++.++.+. +..++-.-+...+++.
T Consensus 631 ~w~~~~e~~~--E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~----------~~~~qhrgl~~~ln~~ 698 (748)
T KOG4151|consen 631 LWNLNLEVAD--EKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE----------DDEIQHRGLVIILNLF 698 (748)
T ss_pred HHHHHHHhhh--hHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc----------hhhhhhhhhhhhhhHH
Confidence 4444444433 46677777777766654544443 444456666777776652 2233333333333332
Q ss_pred ccCCCChHHHHHHHHcCchHHHHHHHhcCCchHHHHHHHHHHh
Q 003530 585 FVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALE 627 (813)
Q Consensus 585 ~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~ 627 (813)
.. ..+....+.....++.+..+-... -...++.++.+|.
T Consensus 699 ~~---~~ei~~~~~~~~~~~~l~~~~~~~-~a~~~~~~~~~l~ 737 (748)
T KOG4151|consen 699 EA---LFEIAEKIFETEVMELLSGLQKLN-RAPKREDAAPCLS 737 (748)
T ss_pred HH---HHHHHHHhccchHHHHHHHHHHhh-hhhhhhhhhhHHH
Confidence 21 333333444444455554433333 4456666666664
No 200
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.31 E-value=0.013 Score=56.74 Aligned_cols=49 Identities=22% Similarity=0.413 Sum_probs=40.6
Q ss_pred CceecccccccCCCc----eecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCC
Q 003530 31 DAFVCPLTKQVMRDP----VTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDL 87 (813)
Q Consensus 31 ~~~~Cpi~~~~m~dp----v~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~~l 87 (813)
..|+|||++-.|.+- ++-+|||.|.-+++.+.-. .+||+|+..+...+.
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeika--------s~C~~C~a~y~~~dv 162 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKA--------SVCHVCGAAYQEDDV 162 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhhh--------ccccccCCcccccCe
Confidence 359999999999887 4579999999888776642 789999999987663
No 201
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.24 E-value=0.2 Score=50.19 Aligned_cols=149 Identities=11% Similarity=0.103 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHhhcCCcccccccccCcHHHHHHHhcCC-----CHHHHHHHHHHHHHhhccC-cchhhhhhcCCCHHHHH
Q 003530 125 IMPALKYVQYFCQSSRSNKHVVHNSELIPMIIDMLKSS-----SRKVRCTALETLRIVVEED-DDNKEILGQGDTVRTIV 198 (813)
Q Consensus 125 ~~~al~~l~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s~-----~~~~~~~al~~L~~L~~~~-~~~~~~i~~~g~i~~Lv 198 (813)
+..+|.-++-.+. +|+.|..+.++...--|...|+.. -+.+|..++.+++.+.+.+ .+.-..+.+.+.+|..+
T Consensus 67 VcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL 145 (262)
T PF04078_consen 67 VCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL 145 (262)
T ss_dssp HHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence 3456777777766 678888888988776667777533 2567889999999998754 34566778899999999
Q ss_pred HHhccCcHHHHHHHHHHHHHhhcCchhHhHHhhh-------hchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHH
Q 003530 199 KFLSHELSREREEAVSLLYELSKSEALCEKIGSI-------NGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVR 271 (813)
Q Consensus 199 ~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~-------~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~ 271 (813)
+.+..|+.-.+..|.-.+..+-.++..-..+..+ ..++..+|.-+.. ..++.+.++.+.+...|+.++..+.
T Consensus 146 r~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~-~pS~RLLKhIIrCYlRLsdnprar~ 224 (262)
T PF04078_consen 146 RIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVK-QPSPRLLKHIIRCYLRLSDNPRARE 224 (262)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHH-S--HHHHHHHHHHHHHHTTSTTHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHcc-CCChhHHHHHHHHHHHHccCHHHHH
Confidence 9999999999999999999998887655444332 3345555554432 5788999999999999999999988
Q ss_pred HHHH
Q 003530 272 QMAE 275 (813)
Q Consensus 272 ~i~~ 275 (813)
++.+
T Consensus 225 aL~~ 228 (262)
T PF04078_consen 225 ALRQ 228 (262)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 202
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.20 E-value=1.2 Score=47.07 Aligned_cols=205 Identities=16% Similarity=0.172 Sum_probs=115.2
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCC--CHH
Q 003530 415 VHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHM--GHE 492 (813)
Q Consensus 415 v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~--~~~ 492 (813)
+...+..+.......|+.++..+.++....-..+.+.. +....+..+...++.+..+-+..|++++..++-.. +.+
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~--~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVED--RRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCcc
Confidence 44555566667789999999999888765432222211 11233677778888777767777878777776331 222
Q ss_pred HHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHH---hcCCCCCHHHHHHHHhcCcHH--HHHHHhhhhcccc--ccC
Q 003530 493 LADALRGAVGQLGSLIRVISENVGISKEQAAAVGLL---AELPERDLGLTRQMLDEGAFG--LIFSRVKSIQLGE--TRG 565 (813)
Q Consensus 493 ~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L---~~L~~~~~~~~~~l~~~g~v~--~L~~lL~~~~~~~--~~~ 565 (813)
. +.+.. ...+.|.+++.++......|..++.+| ..+...+.+-....++ .+. +....+.. .+. .-.
T Consensus 123 ~-~ei~~--~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~--~~~~~~~~ 195 (309)
T PF05004_consen 123 S-EEIFE--ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKS--DGNAPVVA 195 (309)
T ss_pred H-HHHHH--HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCc--CCCccccc
Confidence 2 23333 367788899888765345655555444 3444444333332221 122 11112221 111 001
Q ss_pred CccchhhhHhHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHHhcCCchHHHHHHHHHHhhhccc
Q 003530 566 SRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLE 632 (813)
Q Consensus 566 ~~~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~ls~~ 632 (813)
......+.-.|+.+..-+...+. +......+ ...+|.|..+|+++ +..||..|..+|+=|...
T Consensus 196 ~~~~~~l~~aAL~aW~lLlt~~~-~~~~~~~~--~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 196 AEDDAALVAAALSAWALLLTTLP-DSKLEDLL--EEALPALSELLDSD-DVDVRIAAGEAIALLYEL 258 (309)
T ss_pred CCCccHHHHHHHHHHHHHHhcCC-HHHHHHHH--HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 11234566666555554443321 22233322 34589999999999 999999999998766543
No 203
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.11 E-value=6.6 Score=48.67 Aligned_cols=105 Identities=13% Similarity=0.086 Sum_probs=56.8
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHHh
Q 003530 151 LIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIG 230 (813)
Q Consensus 151 ~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~ 230 (813)
.||.|.+.=.+++..+|.....+=..|..+. ..-..-.-...+..|+.-|.+..-.+|+.++.+|..|-.....-+..-
T Consensus 999 LIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~-k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e 1077 (1702)
T KOG0915|consen 999 LIPRLYRYQYDPDKKVQDAMTSIWNALITDS-KKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKE 1077 (1702)
T ss_pred hhHHHhhhccCCcHHHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 4555555546788888766555444444432 111111112345667777777778889999999999987654433332
Q ss_pred hhhchHHHHHHhcccCCCCHHHHHHHHH
Q 003530 231 SINGAILILVGMTSSKSENLLTVEKAEK 258 (813)
Q Consensus 231 ~~~g~i~~Lv~lL~~~s~~~~~~~~a~~ 258 (813)
..+.....+.+... +-.+.+++.|-.
T Consensus 1078 ~lpelw~~~fRvmD--DIKEsVR~aa~~ 1103 (1702)
T KOG0915|consen 1078 KLPELWEAAFRVMD--DIKESVREAADK 1103 (1702)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 22233334444443 233344444333
No 204
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.04 E-value=0.033 Score=36.25 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=24.9
Q ss_pred hHHHHHhhccCchhHHHHHHHHHHhhhh
Q 003530 686 VEKLIALLDHTNEKVVEASLAALSTVID 713 (813)
Q Consensus 686 i~~Lv~lL~~~~~~v~~~A~~AL~~L~~ 713 (813)
+|.++++|.+++++||.+|+.+|+.+..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6789999999999999999999999874
No 205
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.00 E-value=0.45 Score=55.31 Aligned_cols=103 Identities=23% Similarity=0.248 Sum_probs=64.3
Q ss_pred chHHHHHhhccCchhHHHHHHHHHHhhhhcCcchhhHHHHHHhhcCcHHHHHHHhhcCChHHHHHHHHHHHHHHcchhhh
Q 003530 685 AVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIA 764 (813)
Q Consensus 685 ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~~a~~aL~~i~~~~~~~ 764 (813)
++..+.+=|.++|+.+|..|+.+|+.|-.. .|.. ..++++.+.+ +++++.+|.+|+-++.++++.+...
T Consensus 93 avNti~kDl~d~N~~iR~~AlR~ls~l~~~---------el~~-~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld~~l 161 (757)
T COG5096 93 AVNTIQKDLQDPNEEIRGFALRTLSLLRVK---------ELLG-NIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLDKDL 161 (757)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhcChH---------HHHH-HHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcCHhh
Confidence 455566666777777777777777766421 1222 3456677777 5777777777777777777553332
Q ss_pred hhhcCCCcchHHHHHHhhhcCchhHHHHHHHHHHhcc
Q 003530 765 YEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDK 801 (813)
Q Consensus 765 ~~~~~~~~~~~~Lv~~l~~~~~~~~~~Aa~~L~~l~~ 801 (813)
.+ +.+....+..++.+.||.+...|-.+|+.+..
T Consensus 162 ~~---~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 162 YH---ELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred hh---cccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 22 12234567777777777777777777776653
No 206
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.97 E-value=3.5 Score=48.98 Aligned_cols=241 Identities=15% Similarity=0.157 Sum_probs=144.1
Q ss_pred hhhchHHHHHHhccc---CCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHc----cCC----HHHHHHHHH
Q 003530 231 SINGAILILVGMTSS---KSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQIL----EGP----QETKLSLAA 299 (813)
Q Consensus 231 ~~~g~i~~Lv~lL~~---~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~----~~~----~~~~~~a~~ 299 (813)
.+.||+..|+.++.. .+...+........|...++.+.|+.++.+.|+++.|++.|. .+. .++-+....
T Consensus 114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 457899999998873 123456777788888888999999999999999999998885 323 466666666
Q ss_pred HHHHhcCCchh---H---HHHHhh--------hHHHHHHHHhcC----CHHHHHHHHHHHHHhhCCc-ccHHHHHHcCCh
Q 003530 300 FLGDLALNSDV---K---VLVART--------VGSCLINIMKSG----NMQAREAALKALNQISSCE-PSAKVLIHAGIL 360 (813)
Q Consensus 300 ~L~~L~~~~~~---~---~~i~~~--------gi~~Lv~lL~~~----~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~i 360 (813)
++..+...... . ...... -+..|++.+.++ ++.+....++.|-.|+... +..+.+++. .
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F 271 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--F 271 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--H
Confidence 66665442111 0 000111 267777777653 6788999999999999954 444455443 2
Q ss_pred HHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCC----ccccchhhHHHHHHhhcC--------CChH
Q 003530 361 PPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDN----QTLVSEDIVHNLLHLISN--------TGPT 428 (813)
Q Consensus 361 ~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~----~~l~~~~~v~~Lv~lL~~--------~~~~ 428 (813)
.+.+++ ..... ....+- ..-+..++.++..=+. +.+| ..+.+.|++...++.|.. .+++
T Consensus 272 ~p~l~f-~~~D~-~~~~~~-~~~Le~F~~i~~~I~~------~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~e 342 (802)
T PF13764_consen 272 KPYLDF-DKFDE-EHSPDE-QFKLECFCEIAEGIPN------NSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPE 342 (802)
T ss_pred HHhcCh-hhccc-ccCchH-HHHHHHHHHHHhcCCC------CCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHH
Confidence 333321 11110 001111 2235555555543221 1222 245667888877777653 3455
Q ss_pred HHH--------HHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCC--hHHHHHHHHHHHHhCC
Q 003530 429 IEC--------KLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQ--NDLRLASIELIQNLSP 487 (813)
Q Consensus 429 ~~~--------~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~v~~~A~~~L~~Ls~ 487 (813)
+++ .+++.|..||.+.... +. +...+++ +++.-|+.-. ..+-.-|-.+|-.|+.
T Consensus 343 Wk~~l~~psLp~iL~lL~GLa~gh~~t---Q~-~~~~~~l-~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 343 WKEFLSRPSLPYILRLLRGLARGHEPT---QL-LIAEQLL-PLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred HHHHhcCCcHHHHHHHHHHHHhcCHHH---HH-HHHhhHH-HHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 554 4888899999886532 22 2345566 4444444433 3555666666766664
No 207
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.023 Score=57.59 Aligned_cols=48 Identities=25% Similarity=0.364 Sum_probs=40.6
Q ss_pred CCCceecccccccCCCceec-CCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCC
Q 003530 29 IYDAFVCPLTKQVMRDPVTL-ENGQTFEREAIEKWFKECRENGRKPVCPLTQKEL 82 (813)
Q Consensus 29 ~~~~~~Cpi~~~~m~dpv~~-~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l 82 (813)
+|+.-.||+|.+--.+|-++ .+|+.||-.||-+|... -..||+|+.+.
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~------~~~CPVT~~p~ 345 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN------YGHCPVTGYPA 345 (357)
T ss_pred CCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh------cCCCCccCCcc
Confidence 56778999999999888665 56999999999999985 26799998764
No 208
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=94.93 E-value=0.015 Score=42.64 Aligned_cols=48 Identities=23% Similarity=0.420 Sum_probs=25.3
Q ss_pred ceecccccccCCCcee-cCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcC
Q 003530 32 AFVCPLTKQVMRDPVT-LENGQTFEREAIEKWFKECRENGRKPVCPLTQKE 81 (813)
Q Consensus 32 ~~~Cpi~~~~m~dpv~-~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~ 81 (813)
.+.||++...|+-||- ..|.|.-|-. .+.|+..+...+. ..||+|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~-W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRTPK-WKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS----B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhccCC-eECcCCcCc
Confidence 3789999999999997 7888873322 3455554443554 789999763
No 209
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=94.87 E-value=0.11 Score=44.36 Aligned_cols=63 Identities=11% Similarity=0.094 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHh--ccCcHHHHHHHHHHHHHhhcCc-hhHhHH
Q 003530 167 RCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFL--SHELSREREEAVSLLYELSKSE-ALCEKI 229 (813)
Q Consensus 167 ~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL--~~~~~~~~~~a~~~L~~ls~~~-~~~~~i 229 (813)
+...++.|.+++..+..++..+.+.|+||.++... ...+|-.|++|+.++++|.... ++++.|
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I 68 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFI 68 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45678899999999999999999999999999876 4557888999999999999766 444444
No 210
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.84 E-value=0.21 Score=48.53 Aligned_cols=121 Identities=17% Similarity=0.169 Sum_probs=87.9
Q ss_pred CCHHHHHHHHHHHHhhccCCccHHHHHHc----------------CChHHHHHHHccC------CHHHHHHHHHHHHHhc
Q 003530 248 ENLLTVEKAEKTLANLEKCENNVRQMAEN----------------GRLQPLLTQILEG------PQETKLSLAAFLGDLA 305 (813)
Q Consensus 248 ~~~~~~~~a~~~L~~L~~~~~~~~~i~~~----------------G~i~~Lv~lL~~~------~~~~~~~a~~~L~~L~ 305 (813)
.+......++.+|.||+..++.+..+.+. .++..|++.+..+ ..+--...+.++.|++
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 33445677888899998888777655533 2667788887762 3455667889999999
Q ss_pred CCchhHHHHHhhh-----HHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHHc---CChHHHHHHHh
Q 003530 306 LNSDVKVLVARTV-----GSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHA---GILPPLVKDLF 368 (813)
Q Consensus 306 ~~~~~~~~i~~~g-----i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~---g~i~~Lv~lL~ 368 (813)
..+++|..+.+.. +..|+-.+.+.+..-+.-++++|.|+|...+....+... +++|.|+.-|.
T Consensus 87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 87 QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 9999999888753 455555566677777889999999999988888877753 45555555444
No 211
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=94.82 E-value=0.13 Score=51.82 Aligned_cols=96 Identities=19% Similarity=0.353 Sum_probs=82.1
Q ss_pred cHHHHHHHHHHHhhcCCcccccccccCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhc
Q 003530 124 DIMPALKYVQYFCQSSRSNKHVVHNSELIPMIIDMLK-SSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLS 202 (813)
Q Consensus 124 ~~~~al~~l~~l~~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 202 (813)
.+..||+-|+.+|--+|..|..+.....+..|+++|. +..+.++..++.+|..+..+++.|.+.+.+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 3556889999999999999999999999999999994 467899999999999999999999999999999999999998
Q ss_pred cCc--HHHHHHHHHHHHHh
Q 003530 203 HEL--SREREEAVSLLYEL 219 (813)
Q Consensus 203 ~~~--~~~~~~a~~~L~~l 219 (813)
+.. .+++-..++.|+-.
T Consensus 187 ~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred cccccHHHhHHHHHHHHHH
Confidence 664 44555666655533
No 212
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.78 E-value=0.99 Score=52.59 Aligned_cols=161 Identities=16% Similarity=0.082 Sum_probs=114.7
Q ss_pred ccHHHHHHHH-HHHhhcCCcccccccccCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHh
Q 003530 123 SDIMPALKYV-QYFCQSSRSNKHVVHNSELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFL 201 (813)
Q Consensus 123 ~~~~~al~~l-~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL 201 (813)
....+|++.+ ..+..+.+.. -..|.+++...+.|.+++.-.---|.+.+..++ ..++. ++..+.+=|
T Consensus 34 ~~kidAmK~iIa~M~~G~dms-------sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P--~~~lL---avNti~kDl 101 (757)
T COG5096 34 YKKIDAMKKIIAQMSLGEDMS-------SLFPDVIKNVATRDVELKRLLYLYLERYAKLKP--ELALL---AVNTIQKDL 101 (757)
T ss_pred HHHHHHHHHHHHHHhcCCChH-------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH--HHHHH---HHHHHHhhc
Confidence 3455677764 4444333321 135666777677888888877777778877764 22332 366777778
Q ss_pred ccCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHH
Q 003530 202 SHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQP 281 (813)
Q Consensus 202 ~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~ 281 (813)
.++++.+|..|++++..+-. . .+. ...++++.+++. ++++.+++.|+-++.++-.- .+....+.|.+..
T Consensus 102 ~d~N~~iR~~AlR~ls~l~~----~-el~--~~~~~~ik~~l~--d~~ayVRk~Aalav~kly~l--d~~l~~~~g~~~~ 170 (757)
T COG5096 102 QDPNEEIRGFALRTLSLLRV----K-ELL--GNIIDPIKKLLT--DPHAYVRKTAALAVAKLYRL--DKDLYHELGLIDI 170 (757)
T ss_pred cCCCHHHHHHHHHHHHhcCh----H-HHH--HHHHHHHHHHcc--CCcHHHHHHHHHHHHHHHhc--CHhhhhcccHHHH
Confidence 89999999999988877632 1 222 357888999998 88999999999999888432 2344557788999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcC
Q 003530 282 LLTQILEGPQETKLSLAAFLGDLAL 306 (813)
Q Consensus 282 Lv~lL~~~~~~~~~~a~~~L~~L~~ 306 (813)
+..++.+.++.+..+|..+|..+..
T Consensus 171 l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 171 LKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhch
Confidence 9999999999999999888888754
No 213
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.78 E-value=0.2 Score=57.31 Aligned_cols=219 Identities=14% Similarity=0.130 Sum_probs=143.7
Q ss_pred HHHhhhHHHHHHHHhcCCHHHHHHHHHHHH-HhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHH
Q 003530 313 LVARTVGSCLINIMKSGNMQAREAALKALN-QISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVV 391 (813)
Q Consensus 313 ~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~-~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~ 391 (813)
.|...|...|+.|....++..+..+..+|. .+... ..+. ...++++...+... ..-.-.-.++.+|.||+
T Consensus 500 ~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~-~~~~----~~v~~~~~s~~~~d----~~~~en~E~L~altnLa 570 (748)
T KOG4151|consen 500 KIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFP-GERS----YEVVKPLDSALHND----EKGLENFEALEALTNLA 570 (748)
T ss_pred cccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCC-CCch----hhhhhhhcchhhhh----HHHHHHHHHHHHhhccc
Confidence 344456789999988888889999999888 33221 1111 23566666666542 22233446788899988
Q ss_pred hcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHh-cCCHHHHHHhhhCC
Q 003530 392 NSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKS-SGATISLVQFVEAP 470 (813)
Q Consensus 392 ~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~-~g~i~~Lv~lL~~~ 470 (813)
+.+..... .+..+..++.+-.++...++..|..++..+.||..++.. +-..+.+ ..+.+.....+...
T Consensus 571 s~s~s~r~--------~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~---~e~si~e~~~~l~~w~~~~e~~ 639 (748)
T KOG4151|consen 571 SISESDRQ--------KILKEKALGKIEELMTEENPALQRAALESIINLLWSPLL---YERSIVEYKDRLKLWNLNLEVA 639 (748)
T ss_pred CcchhhHH--------HHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHH---HHHHhhccccCchHHHHHHHhh
Confidence 87654432 355566666666777788999999999999999998763 3333444 45566666666666
Q ss_pred ChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHHH
Q 003530 471 QNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGL 550 (813)
Q Consensus 471 ~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~ 550 (813)
......+++.++..+.....+......... .+...++.++.+.+. +++...+..+.|+.....++...++....++.
T Consensus 640 ~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~-~~~e~~~~~i~~~~~--~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~ 716 (748)
T KOG4151|consen 640 DEKFELAGAGALAAITSVVENHCSRILELL-EWLEILVRAIQDEDD--EIQHRGLVIILNLFEALFEIAEKIFETEVMEL 716 (748)
T ss_pred hhHHhhhccccccchhhcchhhhhhHHHhh-cchHHHHHhhcCchh--hhhhhhhhhhhhHHHHHHHHHHHhccchHHHH
Confidence 666777777666644421111111111111 567889999999886 99999988888877777777777777766666
Q ss_pred HHHH
Q 003530 551 IFSR 554 (813)
Q Consensus 551 L~~l 554 (813)
+...
T Consensus 717 l~~~ 720 (748)
T KOG4151|consen 717 LSGL 720 (748)
T ss_pred HHHH
Confidence 5554
No 214
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.66 E-value=0.065 Score=46.99 Aligned_cols=70 Identities=20% Similarity=0.283 Sum_probs=60.4
Q ss_pred cHHHHHHHh-cCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhh
Q 003530 151 LIPMIIDML-KSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELS 220 (813)
Q Consensus 151 ~i~~Lv~lL-~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls 220 (813)
.+..|+++| .+.++.+..-|+.-|+.++...+..|..+.+.|+=+.+..++.++|+++|.+|+.++..+-
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 577888999 4557788888999999999999999999999999999999999999999999999987764
No 215
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.62 E-value=14 Score=44.74 Aligned_cols=122 Identities=15% Similarity=0.165 Sum_probs=84.2
Q ss_pred cchhhhHhHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHHhcCCchHHHHHHHHHHhhhccccccccCCCCCCCCCC
Q 003530 568 FVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGF 647 (813)
Q Consensus 568 ~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~ls~~~~~l~~~~~~~~~~~ 647 (813)
.++.++.+|.-+|++|... +...-+ .-+|.|...+..++++.+|.++..+++.|+..=+++-.
T Consensus 935 sdp~Lq~AAtLaL~klM~i---Sa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie--------- 997 (1251)
T KOG0414|consen 935 SDPELQAAATLALGKLMCI---SAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIE--------- 997 (1251)
T ss_pred CCHHHHHHHHHHHHHHhhh---hHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhcccccc---------
Confidence 3567777788888888744 222221 33689999998554999999999999877653222211
Q ss_pred CcccccccccCCCCCCCCcccccccCccccchhhhccchHHHHHhhccCchhHHHHHHHHHHhhhhcCcchhhHHHHHHh
Q 003530 648 CASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCE 727 (813)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~~ 727 (813)
. --+.|-.-|.++++.||..|...|+.|..++ +|.=
T Consensus 998 -----------------------------------~-~T~~Ly~rL~D~~~~vRkta~lvlshLILnd--------miKV 1033 (1251)
T KOG0414|consen 998 -----------------------------------P-WTEHLYRRLRDESPSVRKTALLVLSHLILND--------MIKV 1033 (1251)
T ss_pred -----------------------------------h-hhHHHHHHhcCccHHHHHHHHHHHHHHHHhh--------hhHh
Confidence 0 1245778889999999999999999998653 2333
Q ss_pred hcCcHHHHHHHhhcCChHHHHHHH
Q 003530 728 AQGIKPILDVLLEKRTENLQRRAV 751 (813)
Q Consensus 728 ~~~v~~L~~ll~~~~~~~~~~~a~ 751 (813)
-|-+..+...+ ..+++.++.-|-
T Consensus 1034 KGql~eMA~cl-~D~~~~IsdlAk 1056 (1251)
T KOG0414|consen 1034 KGQLSEMALCL-EDPNAEISDLAK 1056 (1251)
T ss_pred cccHHHHHHHh-cCCcHHHHHHHH
Confidence 46666677777 577777776665
No 216
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.62 E-value=11 Score=43.38 Aligned_cols=297 Identities=13% Similarity=0.186 Sum_probs=167.0
Q ss_pred CCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhHHHHHhhhHHHHHH--
Q 003530 247 SENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLIN-- 324 (813)
Q Consensus 247 s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~gi~~Lv~-- 324 (813)
++|+-++-.....|+.|-. ..+++ ..+|.+.+.|...+.-+|.+|..++..+-.+.+ ..+- ..|.|+.
T Consensus 110 HPNEyiRG~TLRFLckLkE-----~ELle-pl~p~IracleHrhsYVRrNAilaifsIyk~~~--~L~p--DapeLi~~f 179 (948)
T KOG1058|consen 110 HPNEYIRGSTLRFLCKLKE-----PELLE-PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE--HLIP--DAPELIESF 179 (948)
T ss_pred CchHhhcchhhhhhhhcCc-----HHHhh-hhHHHHHHHHhCcchhhhhhhheeehhHHhhhh--hhcC--ChHHHHHHH
Confidence 6777777777766665511 11121 355666677778899999999988887654310 0010 1344444
Q ss_pred HHhcCCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCC
Q 003530 325 IMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGP 404 (813)
Q Consensus 325 lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~ 404 (813)
++...++..+++|.-.|...- ++. ++.-|...+.... +-...++-.....+...|...+..
T Consensus 180 L~~e~DpsCkRNAFi~L~~~D--~Er--------Al~Yl~~~idqi~--~~~~~LqlViVE~Irkv~~~~p~~------- 240 (948)
T KOG1058|consen 180 LLTEQDPSCKRNAFLMLFTTD--PER--------ALNYLLSNIDQIP--SFNDSLQLVIVELIRKVCLANPAE------- 240 (948)
T ss_pred HHhccCchhHHHHHHHHHhcC--HHH--------HHHHHHhhHhhcc--CccHHHHHHHHHHHHHHHhcCHHH-------
Confidence 334567778888877665421 111 2222222222211 012445555556666655543322
Q ss_pred CCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhh-CCChHHHHHHHHHHH
Q 003530 405 DNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVE-APQNDLRLASIELIQ 483 (813)
Q Consensus 405 ~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~~L~ 483 (813)
....+..+..+|++.++.+...|+.+|..|+..|.. ++.+ ...++.++. .++..++.-..--|.
T Consensus 241 ------~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~a---lk~A------a~~~i~l~~kesdnnvklIvldrl~ 305 (948)
T KOG1058|consen 241 ------KARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTA---LKAA------ASTYIDLLVKESDNNVKLIVLDRLS 305 (948)
T ss_pred ------hhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHH---HHHH------HHHHHHHHHhccCcchhhhhHHHHH
Confidence 245688899999999999999999999999988763 2221 334444443 334455443333344
Q ss_pred HhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHHhhhh--ccc
Q 003530 484 NLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSI--QLG 561 (813)
Q Consensus 484 ~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~--~~~ 561 (813)
.+... + +.+-+ |.+-.++++|.+++- +++..+..+.-.|.. ..-+..++.+|+.. +..
T Consensus 306 ~l~~~--~---~~il~--~l~mDvLrvLss~dl--dvr~Ktldi~ldLvs-----------srNvediv~~Lkke~~kT~ 365 (948)
T KOG1058|consen 306 ELKAL--H---EKILQ--GLIMDVLRVLSSPDL--DVRSKTLDIALDLVS-----------SRNVEDIVQFLKKEVMKTH 365 (948)
T ss_pred HHhhh--h---HHHHH--HHHHHHHHHcCcccc--cHHHHHHHHHHhhhh-----------hccHHHHHHHHHHHHHhcc
Confidence 43311 1 22222 567778889988885 888888776655543 22233344444321 000
Q ss_pred cccCCccchhhhHhHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHHhcCCchH
Q 003530 562 ETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDK 617 (813)
Q Consensus 562 ~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~ 617 (813)
+. .......+....+.++..++.. -|+... .++|.|++.+.+. ++.
T Consensus 366 ~~-e~d~~~~yRqlLiktih~cav~---Fp~~aa-----tvV~~ll~fisD~-N~~ 411 (948)
T KOG1058|consen 366 NE-ESDDNGKYRQLLIKTIHACAVK---FPEVAA-----TVVSLLLDFISDS-NEA 411 (948)
T ss_pred cc-ccccchHHHHHHHHHHHHHhhc---ChHHHH-----HHHHHHHHHhccC-CHH
Confidence 00 1112334556677788777754 666544 4579999999887 543
No 217
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.58 E-value=1.3 Score=44.64 Aligned_cols=193 Identities=15% Similarity=0.078 Sum_probs=124.5
Q ss_pred CHHHHHHHHHHHHHhhccCcchhhhhh-cCCCHHHHHHH-------hccCc-----HHHHHHHHHHHHHhhcCchhHhHH
Q 003530 163 SRKVRCTALETLRIVVEEDDDNKEILG-QGDTVRTIVKF-------LSHEL-----SREREEAVSLLYELSKSEALCEKI 229 (813)
Q Consensus 163 ~~~~~~~al~~L~~L~~~~~~~~~~i~-~~g~i~~Lv~l-------L~~~~-----~~~~~~a~~~L~~ls~~~~~~~~i 229 (813)
+++.|+.|+..|..--...++-.-.+- ..|.+..|++= |+.+. ..-..+|+..|.-++.|++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 567788777776654332222222222 34555555422 22221 233578889999999999999888
Q ss_pred hhhhchHHHHHHhcccCCC---CHHHHHHHHHHHHhhccCCc--cHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHh
Q 003530 230 GSINGAILILVGMTSSKSE---NLLTVEKAEKTLANLEKCEN--NVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDL 304 (813)
Q Consensus 230 ~~~~g~i~~Lv~lL~~~s~---~~~~~~~a~~~L~~L~~~~~--~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L 304 (813)
.+ ....-.|..+|+..+. .+-++-.+.+++..|.+.++ -..-+.+...||..++.|..|++-.|.-|..++.++
T Consensus 88 l~-a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 88 LK-AHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HH-TTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HH-cCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 74 4555555555653222 24567778888888876433 344566789999999999999999999999999999
Q ss_pred cCCchhHHHHHhh---------hHHHHH-HHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHH
Q 003530 305 ALNSDVKVLVART---------VGSCLI-NIMKSGNMQAREAALKALNQISSCEPSAKVLIH 356 (813)
Q Consensus 305 ~~~~~~~~~i~~~---------gi~~Lv-~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~ 356 (813)
-.++.+-..+... .+..++ .+...+++.+.++..++-..|+.++..+..+.+
T Consensus 167 L~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 167 LLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred HcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 8888766555432 123333 344568889999999999999999887777654
No 218
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.55 E-value=13 Score=44.10 Aligned_cols=488 Identities=14% Similarity=0.096 Sum_probs=242.2
Q ss_pred chHHHHHHhcccCCCCHHHHHHHHHHHHhh-ccCCccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhHH
Q 003530 234 GAILILVGMTSSKSENLLTVEKAEKTLANL-EKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKV 312 (813)
Q Consensus 234 g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L-~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~ 312 (813)
.++..|-.+.-. +++.+.+......+..+ +.+++|-...-+.--+|.+|.-|...+..++.....+|.--.. --++
T Consensus 466 eAvqmLqdiFLk-aenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVt-vvnc- 542 (2799)
T KOG1788|consen 466 EAVQMLQDIFLK-AENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVT-VVNC- 542 (2799)
T ss_pred HHHHHHHHHHHH-hcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHh-hhcc-
Confidence 355566554332 67778888888888877 5677887766777788999988888887777766655543111 0000
Q ss_pred HHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHhhC-CcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHH
Q 003530 313 LVARTVGSCLINIMKSG-NMQAREAALKALNQISS-CEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANV 390 (813)
Q Consensus 313 ~i~~~gi~~Lv~lL~~~-~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL 390 (813)
+-+.-+-.|.-+|+.+ +..++..-+.....|-. +...++.+.+.|++..|...|+.+..--.+.. -.++. ..
T Consensus 543 -vPeqELlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdq----ysgvs-eh 616 (2799)
T KOG1788|consen 543 -VPEQELLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQ----YSGVS-EH 616 (2799)
T ss_pred -CcHHHHHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcch----hhhHH-HH
Confidence 0000112233344432 22333333333344444 45778888899999999988887421000000 00111 11
Q ss_pred HhcCCCCcccccCCCCccccchhhHHHHHHhhcCCC--hHHHH------HHHHHHHHcccCCCchHHHHHHHHhcCCHHH
Q 003530 391 VNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTG--PTIEC------KLLQVLVGLTSSPTTVLSVVSAIKSSGATIS 462 (813)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~--~~~~~------~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~ 462 (813)
....+....+. ++ +.....+-.--.+..+++ ..+.+ -.-.+|..+-+++. ++.+.++++.|+..
T Consensus 617 ydrnpss~sf~--~~---ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnt---eNqklFreanGvkl 688 (2799)
T KOG1788|consen 617 YDRNPSSPSFK--QH---LDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNT---ENQKLFREANGVKL 688 (2799)
T ss_pred hhcCCCCchhh--hc---cccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccc---hhhHHHHhhcCceE
Confidence 11111110000 00 000010000001122111 11111 11233444555544 56778899999999
Q ss_pred HHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCC----------ChHHHHHHHHHHhcCC
Q 003530 463 LVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVG----------ISKEQAAAVGLLAELP 532 (813)
Q Consensus 463 Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~----------~~~~~~~a~~~L~~L~ 532 (813)
+++++ -+++.|....+++.+|-.-.+.. +.. ..+..||+.|+++.. ........++++..+.
T Consensus 689 ilpfl--indehRSslLrivscLitvdpkq----vhh--qelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwriv 760 (2799)
T KOG1788|consen 689 ILPFL--INDEHRSSLLRIVSCLITVDPKQ----VHH--QELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIV 760 (2799)
T ss_pred EEEee--echHHHHHHHHHHHHHhccCccc----ccH--HHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHH
Confidence 99988 45677777778887776322221 111 356678888887432 0133446677888877
Q ss_pred CCCHHHHHHHHhcCcHHHHHHHhhhhccccccCCccchhhhHhHHHHHHHHh-ccCCCChHHHHHHHHcCchHHHHHHHh
Q 003530 533 ERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVT-FVLSDEPDAIALCCEHNLAALFIELLQ 611 (813)
Q Consensus 533 ~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~-~~l~~~~~~~~~~~~~~~i~~L~~lL~ 611 (813)
.-|...++.+.+++++..|..+|...+.-..-....+..+--.....|.++. .....|+.++......=.-..+.+||+
T Consensus 761 gvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavcenasNrmklhtvITsqtftsLLr 840 (2799)
T KOG1788|consen 761 GVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLR 840 (2799)
T ss_pred ccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHH
Confidence 6677778889999999999999876442110000011111111222222211 000023333332211111223444444
Q ss_pred cCC--chHHHHHHHHHHhhhccccccccCCCCCCCCCCCcccccccccCCCCCCCCcccccccCccccchhhhccchHHH
Q 003530 612 SNG--LDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKL 689 (813)
Q Consensus 612 ~~~--~~~vk~~Aa~aL~~ls~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gai~~L 689 (813)
.++ -.+.-+.....|..++
T Consensus 841 esgllcvnler~viqlllEla----------------------------------------------------------- 861 (2799)
T KOG1788|consen 841 ESGLLCVNLERHVIQLLLELA----------------------------------------------------------- 861 (2799)
T ss_pred HhccceecchHHHHHHHHHHH-----------------------------------------------------------
Confidence 432 0111111111111111
Q ss_pred HHhhccCchhHHHHHHHHHHhhhhcCc-------chhhHHHHHHhhcCcHHHHHHHhhcCChHHHHHHHHHHHHHHcchh
Q 003530 690 IALLDHTNEKVVEASLAALSTVIDDGV-------DIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDD 762 (813)
Q Consensus 690 v~lL~~~~~~v~~~A~~AL~~L~~~~~-------~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~~a~~aL~~i~~~~~ 762 (813)
.+.|..++-.--.+|+..+..+-.+-+ .+..--+.|..+|++..|++.+. ...+.+|-.-..+++...+...
T Consensus 862 levlvppfLtSEsaAcaeVfelednifavntPsGqfnpdk~~iynagavRvlirslL-lnypK~qlefl~lleSlaRasp 940 (2799)
T KOG1788|consen 862 LEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLL-LNYPKLQLEFLNLLESLARASP 940 (2799)
T ss_pred HHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHH-hhChHHHHHHHHHHHHHhhcCC
Confidence 011112222222222222222211100 01123467889999999998885 6778888888889999988744
Q ss_pred hhhhhcCCCcchHHHH---HHhhhcCchhHHHHHHHHHHhcccCCCC
Q 003530 763 IAYEVSGDPNVSTALV---DAFQHADYRTRQIAERALKHIDKIPNFS 806 (813)
Q Consensus 763 ~~~~~~~~~~~~~~Lv---~~l~~~~~~~~~~Aa~~L~~l~~~~~~s 806 (813)
.-.......+-+..|. --+.+|+...-..|.++..-|..++--+
T Consensus 941 fnaelltS~gcvellleIiypflsgsspfLshalkIvemLgayrlsp 987 (2799)
T KOG1788|consen 941 FNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEMLGAYRLSP 987 (2799)
T ss_pred CchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHHHhhccCCc
Confidence 3333222222233333 3456777777777777777777665544
No 219
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.47 E-value=0.17 Score=43.19 Aligned_cols=72 Identities=15% Similarity=0.197 Sum_probs=54.9
Q ss_pred HHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHH
Q 003530 448 LSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGL 527 (813)
Q Consensus 448 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~ 527 (813)
......| +++++..+.+++.+||..|+.+|.++++....++...+. .....|.+++.+++. .+|..| ..
T Consensus 22 ~~~l~~I-----l~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~---~IF~~L~kl~~D~d~--~Vr~~a-~~ 90 (97)
T PF12755_consen 22 SKYLDEI-----LPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFN---EIFDALCKLSADPDE--NVRSAA-EL 90 (97)
T ss_pred HHHHHHH-----HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHcCCch--hHHHHH-HH
Confidence 3445545 899999999999999999999999999766666555444 467889999988885 777766 44
Q ss_pred Hhc
Q 003530 528 LAE 530 (813)
Q Consensus 528 L~~ 530 (813)
|-+
T Consensus 91 Ld~ 93 (97)
T PF12755_consen 91 LDR 93 (97)
T ss_pred HHH
Confidence 433
No 220
>PRK14707 hypothetical protein; Provisional
Probab=94.40 E-value=22 Score=45.96 Aligned_cols=381 Identities=15% Similarity=0.115 Sum_probs=177.4
Q ss_pred cHHHHHHHHHHHhhcCCcccccccccCcHHHHHHHhc--CCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHh
Q 003530 124 DIMPALKYVQYFCQSSRSNKHVVHNSELIPMIIDMLK--SSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFL 201 (813)
Q Consensus 124 ~~~~al~~l~~l~~~~~~~r~~i~~~g~i~~Lv~lL~--s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL 201 (813)
.+.+++..|...+.+.+..+..+. ..-|..++.-++ .++.+.+..+......++.++ ..+..+ ...+|..++.-+
T Consensus 138 ~c~~a~a~i~~~~~~~~~~~~~l~-~~~~~lllNafSKw~~~~~c~~aa~~la~~~~~~d-~~~~~~-~~q~ia~~lNa~ 214 (2710)
T PRK14707 138 RCERAVARLARHLRREDKARQTLN-AQNISLALNAFSKWSDNPDCQAVAPRFAALVASDD-RLRSAM-DAQGVATVLNAL 214 (2710)
T ss_pred HHHHHHHHHHHHhccccchhhhhc-cccHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCh-hhhccc-chHHHHHHHHHH
Confidence 344555555544443333222221 122444555553 356666666665555666654 555555 445566666666
Q ss_pred cc-CcHHHHHHHHHHHH-HhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHH-hhccCCccHHHHHHcCC
Q 003530 202 SH-ELSREREEAVSLLY-ELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLA-NLEKCENNVRQMAENGR 278 (813)
Q Consensus 202 ~~-~~~~~~~~a~~~L~-~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~-~L~~~~~~~~~i~~~G~ 278 (813)
+. ++...-++++..|. .++.+...+..+ .+.++-..+..|..-.+.+. -.+++.+|. .|..+..-+.++-. -.
T Consensus 215 sKWp~~~~c~~aa~~la~~l~~~~~l~~~~--~~q~va~~lN~lsKwp~~~~-C~~a~~~lA~rl~~~~~l~~al~~-q~ 290 (2710)
T PRK14707 215 CKWPDTPDCGNAVSALAERLADESRLRNEL--KPQELGNALNALSKWADTPV-CAAAASALAERLVDDPGLRKALDP-IN 290 (2710)
T ss_pred hcCCCChhHHHHHHHHHHHHcCcHHHHHhC--ChHHHHHHHHHHhcCCCchH-HHHHHHHHHHHHhhhHHHHHhcCH-HH
Confidence 43 33333344444444 555555555554 34555566666653233333 444554444 34433333333322 12
Q ss_pred hHHHHHHHc-cCCHHHHHHHHHHH-HHhcCCchhHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHH-HHhhCCcccHHHH
Q 003530 279 LQPLLTQIL-EGPQETKLSLAAFL-GDLALNSDVKVLVARTVGSCLINIMKS-GNMQAREAALKAL-NQISSCEPSAKVL 354 (813)
Q Consensus 279 i~~Lv~lL~-~~~~~~~~~a~~~L-~~L~~~~~~~~~i~~~gi~~Lv~lL~~-~~~~~~~~a~~aL-~~Ls~~~~~~~~i 354 (813)
+-..+.-|. =.+..+...++..| ..|..+.+-+..+...++...+.-|+. ++..+...|+.+| ..|+..++-++.+
T Consensus 291 vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l 370 (2710)
T PRK14707 291 VTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDL 370 (2710)
T ss_pred HHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhccc
Confidence 222233332 23455555544444 444445555555555566666666655 4444444444444 4455555555554
Q ss_pred HHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhc-CCChHHHHHH
Q 003530 355 IHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS-NTGPTIECKL 433 (813)
Q Consensus 355 ~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~-~~~~~~~~~a 433 (813)
- .-++...+..|.... +......|+..|+.=...+.+... .+...+ |..++.-|. .++..+-..+
T Consensus 371 ~-~q~~a~~lNalsKWp----~~~~c~~aa~~LA~~l~~d~~l~~--------~~~~Q~-van~lnalsKWPd~~~C~~a 436 (2710)
T PRK14707 371 E-PQGVSSVLNALSKWP----DTPVCAAAASALAEHVVDDLELRK--------GLDPQG-VSNALNALAKWPDLPICGQA 436 (2710)
T ss_pred c-hhHHHHHHhhhhcCC----CchHHHHHHHHHHHHhccChhhhh--------hcchhh-HHHHHHHhhcCCcchhHHHH
Confidence 3 335666666676653 455666666666543333332221 233334 444455444 5555565666
Q ss_pred HHHHH-HcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHH-HHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhh
Q 003530 434 LQVLV-GLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRL-ASIELIQNLSPHMGHELADALRGAVGQLGSLIRVI 511 (813)
Q Consensus 434 ~~~L~-~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~-~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll 511 (813)
+..|. .++.+. +.++.+.-.+....|-.+-+-++..+-. .|-.+...|+. ..++.+.+... +....|-.+-
T Consensus 437 a~~lA~~la~d~----~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~--~~~l~~a~~~q-~~~~~L~aLS 509 (2710)
T PRK14707 437 VSALAGRLAHDT----ELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAH--ERRLRKALKPQ-EVVIALHSLS 509 (2710)
T ss_pred HHHHHHHHhccH----HHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcc--cHHHHhhcCHH-HHHHHHHHhh
Confidence 66664 444443 2333332223333343444555554443 33344444442 22234444433 2333333333
Q ss_pred hcCCCChHHHHHHHHHHhcCCC
Q 003530 512 SENVGISKEQAAAVGLLAELPE 533 (813)
Q Consensus 512 ~~~~~~~~~~~~a~~~L~~L~~ 533 (813)
+-++. ..-..++.++-..+..
T Consensus 510 K~Pd~-~~c~~A~~~lA~rl~~ 530 (2710)
T PRK14707 510 KWPDT-PICAEAASALAERVVD 530 (2710)
T ss_pred cCCCc-HHHHHHHHHHHHHhcc
Confidence 33443 2333334444444443
No 221
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.25 E-value=0.13 Score=45.17 Aligned_cols=73 Identities=12% Similarity=0.272 Sum_probs=59.4
Q ss_pred ccchHHHHHhhc-cCchhHHHHHHHHHHhhhhcCcchhhHHHHHHhhcCcHHHHHHHhhcCChHHHHHHHHHHHHHHc
Q 003530 683 GHAVEKLIALLD-HTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILR 759 (813)
Q Consensus 683 ~gai~~Lv~lL~-~~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~~a~~aL~~i~~ 759 (813)
-..+..|+++|. +.|+.+...|+.=|+.++.... .+...+.+.||-..+.+++ +++|++++..|+-+++++..
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p---~gr~ii~~lg~K~~vM~Lm-~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYP---NGRNIIEKLGAKERVMELM-NHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-G---GGHHHHHHHSHHHHHHHHT-S-SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHCh---hHHHHHHhcChHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence 347889999994 6788899999999999987654 4667777888888899999 69999999999999999863
No 222
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.15 E-value=0.033 Score=59.23 Aligned_cols=50 Identities=18% Similarity=0.418 Sum_probs=38.1
Q ss_pred CCCceecccccccC-----------------CCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCC
Q 003530 29 IYDAFVCPLTKQVM-----------------RDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELR 83 (813)
Q Consensus 29 ~~~~~~Cpi~~~~m-----------------~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~ 83 (813)
..+..-||||+... ++=+++||.|.|-|.|+++|.+. .+-.||+|+++++
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~-----ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDT-----YKLICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhh-----hcccCCccCCCCC
Confidence 44557899998653 12345699999999999999984 2358999999875
No 223
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.03 E-value=0.073 Score=34.61 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=25.6
Q ss_pred chHHHHHHHhcCCchHHHHHHHHHHhhhcc
Q 003530 602 LAALFIELLQSNGLDKVQMVSATALENLSL 631 (813)
Q Consensus 602 ~i~~L~~lL~~~~~~~vk~~Aa~aL~~ls~ 631 (813)
++|.+.++++++ ++.||..|+.+|+.+++
T Consensus 1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDP-SPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence 478999999999 99999999999999875
No 224
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=94.00 E-value=0.46 Score=48.03 Aligned_cols=100 Identities=11% Similarity=0.040 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhc-cCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHh
Q 003530 164 RKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLS-HELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGM 242 (813)
Q Consensus 164 ~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~l 242 (813)
......|+..|.-++.-++..|....+..++..|+.+|. ...+.++..++.+|..+-.+.....+.+...+|+..++.+
T Consensus 105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 334667889999999888999999999999999999994 4567888888888877665544444455678999999999
Q ss_pred cccCCCCHHHHHHHHHHHHhh
Q 003530 243 TSSKSENLLTVEKAEKTLANL 263 (813)
Q Consensus 243 L~~~s~~~~~~~~a~~~L~~L 263 (813)
++..+.+.+++-..+..|+-.
T Consensus 185 lk~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred HccccccHHHhHHHHHHHHHH
Confidence 997677788888888777644
No 225
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.99 E-value=17 Score=43.22 Aligned_cols=434 Identities=12% Similarity=0.068 Sum_probs=210.9
Q ss_pred CcHHHHHHHhc------C--CCHHHHHHHHHHHHHhhcc---CcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHH
Q 003530 150 ELIPMIIDMLK------S--SSRKVRCTALETLRIVVEE---DDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYE 218 (813)
Q Consensus 150 g~i~~Lv~lL~------s--~~~~~~~~al~~L~~L~~~---~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 218 (813)
|.++.++++|. . .++.....|+..++.++.- ....+. ..+.=.++.+...++++.--.|..|++++..
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~-~mE~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKS-QMEYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHH-HHHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 45677777775 2 3456677788888887631 111122 2222234555566678777889999999999
Q ss_pred hhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhcc-CCccHHHHHHc--CChHHHHHHHccCCHHHHH
Q 003530 219 LSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEK-CENNVRQMAEN--GRLQPLLTQILEGPQETKL 295 (813)
Q Consensus 219 ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~--G~i~~Lv~lL~~~~~~~~~ 295 (813)
.+.-+-.-..+. ..++....+.|.+ +.+.-++..|+-+|..+-. .+.+..++... +.++.|+.+.+.-..+...
T Consensus 489 ~~~~df~d~~~l--~~ale~t~~~l~~-d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt 565 (1010)
T KOG1991|consen 489 FSSIDFKDPNNL--SEALELTHNCLLN-DNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLT 565 (1010)
T ss_pred HHhccCCChHHH--HHHHHHHHHHhcc-CCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHH
Confidence 984332222222 2456666666664 5666788899999988844 44444445432 4555666666654333332
Q ss_pred H-HHHHHHHhcCC-chhHHHHHhhhHHHHHHHHhc------CCHHHHHHHHHHHHHhhC---CcccHHHHHH--cC-ChH
Q 003530 296 S-LAAFLGDLALN-SDVKVLVARTVGSCLINIMKS------GNMQAREAALKALNQISS---CEPSAKVLIH--AG-ILP 361 (813)
Q Consensus 296 ~-a~~~L~~L~~~-~~~~~~i~~~gi~~Lv~lL~~------~~~~~~~~a~~aL~~Ls~---~~~~~~~i~~--~g-~i~ 361 (813)
. +-..+...+.. ......+..+-....++++.. ++.+-+-.|.+.|..+++ .-++...+.+ .. .+|
T Consensus 566 ~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~ 645 (1010)
T KOG1991|consen 566 NVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLP 645 (1010)
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 2 22333332210 011112222223556666652 233456677888877765 2244444432 22 344
Q ss_pred HHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcc
Q 003530 362 PLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLT 441 (813)
Q Consensus 362 ~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~ 441 (813)
.+-.+|+... .+.-+.+..+..++......-.. .+ =+..+-+.+.+.....+.-....-+|.|..
T Consensus 646 vi~~iL~~~i-----~dfyeE~~ei~~~~t~~~~~Isp--------~m--W~ll~li~e~~~~~~~dyf~d~~~~l~N~v 710 (1010)
T KOG1991|consen 646 VIGFILKNDI-----TDFYEELLEIVSSLTFLSKEISP--------IM--WGLLELILEVFQDDGIDYFTDMMPALHNYV 710 (1010)
T ss_pred HHHHHHHHhh-----HHHHHHHHHHHhhhhhhhcccCH--------HH--HHHHHHHHHHHhhhhHHHHHHHHHHHhhhe
Confidence 4445555432 67777888877776554322111 12 255667777776666666666777777665
Q ss_pred cCCCchHHHHHHHHhcCCHHHHHHhhhCCCh--HHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChH
Q 003530 442 SSPTTVLSVVSAIKSSGATISLVQFVEAPQN--DLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISK 519 (813)
Q Consensus 442 ~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~--~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~ 519 (813)
.-..+ ........-.-....+-..|.+.+. .-...|++++-.+.-+..+-+.+.+. -.++..+..+........
T Consensus 711 t~g~~-~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~ip---lf~~~a~~~l~~~~e~s~ 786 (1010)
T KOG1991|consen 711 TYGTP-SLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIP---LFLELALSRLTREVETSE 786 (1010)
T ss_pred eeCch-hhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhH---HHHHHHHHHHhccccchH
Confidence 44221 0000000000112333445555332 33456777766654211112111111 123333333333111136
Q ss_pred HHHHHHHHH-hcCCCCCHHHHHHHHhcCcHHHHHHHhhhhccccccCCccchhhhHhHHHHHHHHhccCCCChHHHHHHH
Q 003530 520 EQAAAVGLL-AELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCC 598 (813)
Q Consensus 520 ~~~~a~~~L-~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~ 598 (813)
.+..+..+. +++-.+....-..|.+.|....+..+.-.....-.+ .++..+---.+..|..+. ..+.......
T Consensus 787 ~~~~~leVvinalyynP~ltL~iLe~~~~~~~ff~~wf~~~~~~~~--~HDkKlcvL~l~tli~l~----~~~~~~~e~l 860 (1010)
T KOG1991|consen 787 LRVMLLEVVINALYYNPKLTLGILENQGFLNNFFTLWFQFINQFKK--VHDKKLCVLGLLTLISLG----QDPQLPSEVL 860 (1010)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHcCCcccHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHhcc----ccCCchHHHH
Confidence 666665544 444443333334444444333322222210000000 012222222233333332 3555554444
Q ss_pred HcCchHHHHHHHhcC
Q 003530 599 EHNLAALFIELLQSN 613 (813)
Q Consensus 599 ~~~~i~~L~~lL~~~ 613 (813)
.++.|.++.|+.+=
T Consensus 861 -~~l~~~lv~L~~~L 874 (1010)
T KOG1991|consen 861 -GQLGPALVELLLSL 874 (1010)
T ss_pred -HHHHHHHHHHHHHH
Confidence 37888888887553
No 226
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=19 Score=43.42 Aligned_cols=248 Identities=14% Similarity=0.066 Sum_probs=138.1
Q ss_pred hchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccC-CHHHHHHHHHHHHHhcCCchhH
Q 003530 233 NGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEG-PQETKLSLAAFLGDLALNSDVK 311 (813)
Q Consensus 233 ~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~ 311 (813)
+++|..|...|+ +.+..++-.|++-+..+..... ..+++ .+|...++++.-. ++...-.++-+|+.|+..-=-.
T Consensus 340 E~vie~Lls~l~--d~dt~VrWSaAKg~grvt~rlp--~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl 414 (1133)
T KOG1943|consen 340 EFVIEHLLSALS--DTDTVVRWSAAKGLGRVTSRLP--PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL 414 (1133)
T ss_pred HHHHHHHHHhcc--CCcchhhHHHHHHHHHHHccCc--HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence 478999999998 8899999999999988865433 22332 3555666655544 3556667778888887532111
Q ss_pred HHHHhhhHHHHHHHHhc--------CCHHHHHHHHHHHHHhhCCc--ccHHHHHHcCChHHHHHHHhccCCCCCChhHHH
Q 003530 312 VLVARTVGSCLINIMKS--------GNMQAREAALKALNQISSCE--PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKE 381 (813)
Q Consensus 312 ~~i~~~gi~~Lv~lL~~--------~~~~~~~~a~~aL~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~ 381 (813)
....+..+|.+++-|.- ....++.+|+-+.|.++... ..-+.+++.=.-..|+..+. |+....++
T Consensus 415 ps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlF-----DrevncRR 489 (1133)
T KOG1943|consen 415 PSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALF-----DREVNCRR 489 (1133)
T ss_pred hHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhc-----CchhhHhH
Confidence 11222234555555532 23468999999999998732 22222333222233444444 34588899
Q ss_pred HHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHH-cccCCCchHHHHHHHHhcCCH
Q 003530 382 VSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVG-LTSSPTTVLSVVSAIKSSGAT 460 (813)
Q Consensus 382 ~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~-L~~~~~~~~~~~~~i~~~g~i 460 (813)
.|..+|........+.. .+++ |+...+.-+-..+.++-..++. ++..+. .+.-+ +
T Consensus 490 AAsAAlqE~VGR~~n~p--------------~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~~~----y~~~~-----f 545 (1133)
T KOG1943|consen 490 AASAALQENVGRQGNFP--------------HGIS-LISTIDYFSVTNRSNCYLDLCVSIAEFSG----YREPV-----F 545 (1133)
T ss_pred HHHHHHHHHhccCCCCC--------------Cchh-hhhhcchhhhhhhhhHHHHHhHHHHhhhh----HHHHH-----H
Confidence 99999987766543321 1111 1111111122334444333332 222221 11111 2
Q ss_pred HHHHHh-hhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHH
Q 003530 461 ISLVQF-VEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQA 522 (813)
Q Consensus 461 ~~Lv~l-L~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~ 522 (813)
++|+.. +.+=+..+|..++++|..|+...+... .. +.+++|+....+.+. ..+.
T Consensus 546 ~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~-----a~-~~L~~lld~~ls~~~--~~r~ 600 (1133)
T KOG1943|consen 546 NHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYL-----AD-YVLPPLLDSTLSKDA--SMRH 600 (1133)
T ss_pred HHHHhcccccccHHHHHHHHHHHHHHHHhhHHhh-----cc-cchhhhhhhhcCCCh--HHhh
Confidence 333322 333466889999999999885433331 22 577888877777765 5544
No 227
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=93.93 E-value=7.5 Score=46.00 Aligned_cols=179 Identities=15% Similarity=0.104 Sum_probs=110.9
Q ss_pred HHHHhhC-CcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHH
Q 003530 340 ALNQISS-CEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNL 418 (813)
Q Consensus 340 aL~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~L 418 (813)
+||++.. ++++.+.+++.||...+.+.++... ..+.+..+.+++.|++...+.+.... ....--...+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~----~~~~~~~il~~l~n~~~~~~~~~~~~-------~~~~~~~~~f 562 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFD----NEELHRKILGLLGNLAEVLELRELLM-------IFEFIDFSVF 562 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhcc----chhHHHHHHHHHHHHHHHhhhhhhhh-------HHHHHHHHHH
Confidence 8999998 5799999999999999999999752 47899999999999998765544310 1101111233
Q ss_pred HHhhcCCCh-HHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHH-HhCCCCCHHHHHH
Q 003530 419 LHLISNTGP-TIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQ-NLSPHMGHELADA 496 (813)
Q Consensus 419 v~lL~~~~~-~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~-~Ls~~~~~~~~~~ 496 (813)
-.++...+. +.-++++.+|..+..+... .. ...-+..+...+. .+...........
T Consensus 563 ~~~~~~w~~~ersY~~~siLa~ll~~~~~---~~-------------------~~~~r~~~~~~l~e~i~~~~~~~~~~~ 620 (699)
T KOG3665|consen 563 KVLLNKWDSIERSYNAASILALLLSDSEK---TT-------------------ECVFRNSVNELLVEAISRWLTSEIRVI 620 (699)
T ss_pred HHHHhhcchhhHHHHHHHHHHHHHhCCCc---Cc-------------------cccchHHHHHHHHHHhhccCccceeeh
Confidence 335544443 7777888888877766431 00 0011111111111 1111111111011
Q ss_pred HhcccccHHH-HHHhhhcCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCcHHHHHHHh
Q 003530 497 LRGAVGQLGS-LIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRV 555 (813)
Q Consensus 497 l~~~~g~i~~-Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~v~~L~~lL 555 (813)
.. ..+.+ +.+++..+.. +..+..|++++.++...+++..+.+.+.|+++.+.+.-
T Consensus 621 ~~---~~f~~~~~~il~~s~~-~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (699)
T KOG3665|consen 621 ND---RSFFPRILRILRLSKS-DGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIR 676 (699)
T ss_pred hh---hhcchhHHHHhcccCC-CchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcc
Confidence 11 22333 5556666654 57889999999999988888888888999888877663
No 228
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=93.33 E-value=0.42 Score=45.04 Aligned_cols=144 Identities=16% Similarity=0.164 Sum_probs=96.4
Q ss_pred HHHHHHHhcc--CcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhcc-CCccH
Q 003530 194 VRTIVKFLSH--ELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEK-CENNV 270 (813)
Q Consensus 194 i~~Lv~lL~~--~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~-~~~~~ 270 (813)
+..++..|.. ..+++|..+.-++..+- +..++... .-.-..+-.++. ..+.+-...+..++..|-. .++-.
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~--~~~~~~i~~~~~--~~~~d~~i~~~~~l~~lfp~~~dv~ 78 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFK--EKISDFIESLLD--EGEMDSLIIAFSALTALFPGPPDVG 78 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHH--HHHHHHHHHHHC--CHHCCHHHHHHHHHHHHCTTTHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHH--HHHHHHHHHHHc--cccchhHHHHHHHHHHHhCCCHHHH
Confidence 4445555543 55677888887777773 33333321 122333444444 3333456667777777743 34445
Q ss_pred HHHH-HcCChHHHHHHHc--cCCHHHHHHHHHHHHHhcCCchhHHHHHhhhHHHHHHHHh-cCCHH-HHHHHHHHHHH
Q 003530 271 RQMA-ENGRLQPLLTQIL--EGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMK-SGNMQ-AREAALKALNQ 343 (813)
Q Consensus 271 ~~i~-~~G~i~~Lv~lL~--~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~gi~~Lv~lL~-~~~~~-~~~~a~~aL~~ 343 (813)
..+. ..|.++.++.++. ..+..++..++.+|..=|.+...+..|.+.|++-|-++++ +.++. ++..|+-+|..
T Consensus 79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 5555 5688999999998 7789999999999999888999999999999999999995 45555 67777777654
No 229
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=93.32 E-value=0.46 Score=46.15 Aligned_cols=111 Identities=18% Similarity=0.133 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHhhcCchhHhHHhh---------------hhchHHHHHHhccc---C-CCCHHHHHHHHHHHHhhccC
Q 003530 206 SREREEAVSLLYELSKSEALCEKIGS---------------INGAILILVGMTSS---K-SENLLTVEKAEKTLANLEKC 266 (813)
Q Consensus 206 ~~~~~~a~~~L~~ls~~~~~~~~i~~---------------~~g~i~~Lv~lL~~---~-s~~~~~~~~a~~~L~~L~~~ 266 (813)
......++.+|.||++.+..+..+.. ....+..|+.++.. . ....+-..+.+.+|.|++..
T Consensus 9 ~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~ 88 (192)
T PF04063_consen 9 SPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL 88 (192)
T ss_pred cchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC
Confidence 33456678888899888877764431 22368888888764 1 12345567889999999999
Q ss_pred CccHHHHHHc--CC--hHHHHHHHccCCHHHHHHHHHHHHHhcCCchhHHHHHh
Q 003530 267 ENNVRQMAEN--GR--LQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVAR 316 (813)
Q Consensus 267 ~~~~~~i~~~--G~--i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~ 316 (813)
++.|..+.+. +. +..|+..+...+..-|.-++.+|.|+|.+.+....+-.
T Consensus 89 ~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~ 142 (192)
T PF04063_consen 89 PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLS 142 (192)
T ss_pred HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcC
Confidence 9999998854 44 77777778878888888899999999998765554443
No 230
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.29 E-value=5.7 Score=41.95 Aligned_cols=171 Identities=14% Similarity=0.072 Sum_probs=112.4
Q ss_pred CCHHHHH-HHhccCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhcc-CC-c
Q 003530 192 DTVRTIV-KFLSHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEK-CE-N 268 (813)
Q Consensus 192 g~i~~Lv-~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~-~~-~ 268 (813)
+.+..|+ ..+.+.++.+|+.|+.+|.-.+.-+. .++ ...++.+...+. .+++.++..|+.++..+.. +. +
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~a--~~~l~l~~~~~~--~~~~~v~~~al~~l~Dll~~~g~~ 98 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---ELA--KEHLPLFLQALQ--KDDEEVKITALKALFDLLLTHGID 98 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HHH--HHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHcCch
Confidence 4454454 66789999999999999998886554 222 234677788886 5799999999999998843 22 1
Q ss_pred cHHH-------HHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhHHHHHhhhHHHHHHHHhc----CCHHHHHHH
Q 003530 269 NVRQ-------MAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKS----GNMQAREAA 337 (813)
Q Consensus 269 ~~~~-------i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~gi~~Lv~lL~~----~~~~~~~~a 337 (813)
.... ......++.+.+.|.+.+++++..++..+.+|-....... ...-+..|+-+--+ ++..++..-
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~--~~~vL~~Lll~yF~p~t~~~~~LrQ~L 176 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD--PPKVLSRLLLLYFNPSTEDNQRLRQCL 176 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence 1111 2234577788899999999999999999999876442211 01112333333222 345666655
Q ss_pred HHHHHHhhCCcccHHHHHHcCChHHHHHHHhccC
Q 003530 338 LKALNQISSCEPSAKVLIHAGILPPLVKDLFTVG 371 (813)
Q Consensus 338 ~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~ 371 (813)
.-.+-..+......+..+..+.+|.+-.+.+...
T Consensus 177 ~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 177 SVFFPVYASSSPENQERLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcc
Confidence 6666667776554556666667888888777653
No 231
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.00 E-value=4.5 Score=46.26 Aligned_cols=97 Identities=19% Similarity=0.173 Sum_probs=70.2
Q ss_pred ccchHHHHHh-hccCchhHHHHHHHHHHhhhhcCcchhhHHHHHHhhcCcHHHHHHHhhcCChHHHHHHHHHHHHHHcch
Q 003530 683 GHAVEKLIAL-LDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTD 761 (813)
Q Consensus 683 ~gai~~Lv~l-L~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~~a~~aL~~i~~~~ 761 (813)
.++|..|+.. ..+.|++||.+|..||+-+..++. ..++..+++|.++.++.+|--|+-+|+..+.-.
T Consensus 553 nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp------------~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGt 620 (929)
T KOG2062|consen 553 NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP------------EQLPSTVSLLSESYNPHVRYGAAMALGIACAGT 620 (929)
T ss_pred hhhHHHhhcccccccchHHHHHHHHHheeeEecCh------------hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCC
Confidence 4577777777 668999999999999998887655 345777889988999999999999999887432
Q ss_pred hhhhhhcCCCcchHHHHH-HhhhcCchhHHHHHHHHHHh
Q 003530 762 DIAYEVSGDPNVSTALVD-AFQHADYRTRQIAERALKHI 799 (813)
Q Consensus 762 ~~~~~~~~~~~~~~~Lv~-~l~~~~~~~~~~Aa~~L~~l 799 (813)
.... .+ .|++ +..+...-+|+-|.-+++.+
T Consensus 621 G~~e-------Ai-~lLepl~~D~~~fVRQgAlIa~amI 651 (929)
T KOG2062|consen 621 GLKE-------AI-NLLEPLTSDPVDFVRQGALIALAMI 651 (929)
T ss_pred CcHH-------HH-HHHhhhhcChHHHHHHHHHHHHHHH
Confidence 2111 12 2333 33455568888888877754
No 232
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.98 E-value=3.4 Score=43.64 Aligned_cols=162 Identities=18% Similarity=0.156 Sum_probs=102.1
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchh--HhHHh----
Q 003530 157 DMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSEAL--CEKIG---- 230 (813)
Q Consensus 157 ~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~--~~~i~---- 230 (813)
.-+++.++.+|..|+.+|+-.+.-+.+.. ...++.+.+.+..++..++..|+.++..+...... -....
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~~~a-----~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~ 108 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDKELA-----KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDE 108 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCc
Confidence 55688999999999999999988664221 23477788888888889999999999988653211 11111
Q ss_pred --hhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccC----CHHHHHHHHHHHHHh
Q 003530 231 --SINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEG----PQETKLSLAAFLGDL 304 (813)
Q Consensus 231 --~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~----~~~~~~~a~~~L~~L 304 (813)
.....+..+.+.+. +.+++++..|+..+..|-....... ....+..|+-+--++ +..++....-.+-..
T Consensus 109 ~~~~~~l~~~l~~~l~--~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y 183 (298)
T PF12719_consen 109 SVDSKSLLKILTKFLD--SENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVY 183 (298)
T ss_pred cchHhHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHH
Confidence 12357788888888 7799999999999988743322211 112222333222222 345555555555555
Q ss_pred cC-CchhHHHHHhhhHHHHHHHHhc
Q 003530 305 AL-NSDVKVLVARTVGSCLINIMKS 328 (813)
Q Consensus 305 ~~-~~~~~~~i~~~gi~~Lv~lL~~ 328 (813)
+. ..+++..+.+..+|.+-.+...
T Consensus 184 ~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 184 ASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 55 3446666666556666665543
No 233
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=92.96 E-value=0.58 Score=45.23 Aligned_cols=91 Identities=16% Similarity=0.227 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHh
Q 003530 377 MRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKS 456 (813)
Q Consensus 377 ~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~ 456 (813)
+.+|.+++-+++-|+..-++ +. +..++.+...|+++++.+|+.|+.+|..|...... ..
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~------------~v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i--k~------ 60 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPN------------LV-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI--KV------ 60 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcH------------HH-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce--ee------
Confidence 57888999999988875432 22 45688999999999999999999999999876331 11
Q ss_pred cCC-HHHHHHhhhCCChHHHHHHHHHHHHhCCC
Q 003530 457 SGA-TISLVQFVEAPQNDLRLASIELIQNLSPH 488 (813)
Q Consensus 457 ~g~-i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~ 488 (813)
.|- +..++.++.+++++++..|..++..++..
T Consensus 61 k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 61 KGQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred hhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 233 37888899999999999999999998854
No 234
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.76 E-value=0.056 Score=56.42 Aligned_cols=58 Identities=31% Similarity=0.633 Sum_probs=42.5
Q ss_pred eecccccccCCCc-----eecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCcccHhhH
Q 003530 33 FVCPLTKQVMRDP-----VTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNPSIALR 94 (813)
Q Consensus 33 ~~Cpi~~~~m~dp-----v~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~ 94 (813)
.+||||.+-..=| |.+.|||-|-..||++|+-. .. ...||.|.-.-...++.+-.++|
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k---~~-~~~cp~c~~katkr~i~~e~alR 67 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGK---KT-KMQCPLCSGKATKRQIRPEYALR 67 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhh---hh-hhhCcccCChhHHHHHHHHHHHH
Confidence 6899999988666 56899999999999999942 23 36899996543334555544443
No 235
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=92.73 E-value=0.17 Score=36.88 Aligned_cols=42 Identities=21% Similarity=0.609 Sum_probs=31.7
Q ss_pred ecccccc--cCCCceecCCC-----chhcHHHHHHHHHHhhhCCCCCCCCCCC
Q 003530 34 VCPLTKQ--VMRDPVTLENG-----QTFEREAIEKWFKECRENGRKPVCPLTQ 79 (813)
Q Consensus 34 ~Cpi~~~--~m~dpv~~~~g-----~t~~r~~i~~~~~~~~~~~~~~~CP~t~ 79 (813)
.|-||.+ --.+|.+.||. |.+=+.|+.+|+.. .+. .+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~---~~~-~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINE---SGN-KTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHH---cCC-CcCCCCC
Confidence 3667775 44677888885 66889999999987 344 7899985
No 236
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=92.65 E-value=6.2 Score=42.88 Aligned_cols=242 Identities=15% Similarity=0.124 Sum_probs=127.1
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhcc-CcHHHHHHHHHHHH-HhhcCchhHhH
Q 003530 152 IPMIIDMLK-SSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSH-ELSREREEAVSLLY-ELSKSEALCEK 228 (813)
Q Consensus 152 i~~Lv~lL~-s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~-~ls~~~~~~~~ 228 (813)
|..+++-|. +....+|+.++-.|+.-+.+ ++.+..+..+|.+..+++.+.. ++...-..++.++. -++.+...-..
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 444555555 34567888888888877775 4899999999999999999943 33324333333333 33333322222
Q ss_pred HhhhhchHHHHHHhcc--c----C------------------------------------CCCHHHHHHHHHHHHhhc--
Q 003530 229 IGSINGAILILVGMTS--S----K------------------------------------SENLLTVEKAEKTLANLE-- 264 (813)
Q Consensus 229 i~~~~g~i~~Lv~lL~--~----~------------------------------------s~~~~~~~~a~~~L~~L~-- 264 (813)
....+.+..+++++. . . .....-+.-|..+|..++
T Consensus 102 -~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~ 180 (361)
T PF07814_consen 102 -LLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRS 180 (361)
T ss_pred -hhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHH
Confidence 122344444444444 0 0 000111122222222231
Q ss_pred -------------cCCccHHHHHHcCChHHHHHHHcc----C------------CHHHHHHHHHHHHHhcC-CchhHHHH
Q 003530 265 -------------KCENNVRQMAENGRLQPLLTQILE----G------------PQETKLSLAAFLGDLAL-NSDVKVLV 314 (813)
Q Consensus 265 -------------~~~~~~~~i~~~G~i~~Lv~lL~~----~------------~~~~~~~a~~~L~~L~~-~~~~~~~i 314 (813)
..+-.+..+.+.|+++.+++.+.+ . +-.....+..+|.+.+. +.+++..+
T Consensus 181 ~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l 260 (361)
T PF07814_consen 181 LREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSYL 260 (361)
T ss_pred HhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHHH
Confidence 012236677778899999999862 1 11234456677777765 45566655
Q ss_pred Hhh--h-HH-HHHHHH---hcCCHHHHHHHHHHHHHhhCC-cccHHHHHHcCChHHHHH---HHhcc---C---CCCCCh
Q 003530 315 ART--V-GS-CLINIM---KSGNMQAREAALKALNQISSC-EPSAKVLIHAGILPPLVK---DLFTV---G---SNHLPM 377 (813)
Q Consensus 315 ~~~--g-i~-~Lv~lL---~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Lv~---lL~~~---~---~~~~~~ 377 (813)
... + ++ .+..++ ..........+++.|.||+.+ +.....+...+....+.. .+... . ......
T Consensus 261 ~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 340 (361)
T PF07814_consen 261 LSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNYVPEESSF 340 (361)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccccccccccccc
Confidence 543 1 22 222222 222344568899999999984 455555544332222211 11110 0 012234
Q ss_pred hHHHHHHHHHHHHHhcCC
Q 003530 378 RLKEVSATILANVVNSGH 395 (813)
Q Consensus 378 ~~~~~a~~~L~nL~~~~~ 395 (813)
+...-++++|-||+..++
T Consensus 341 D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 341 DILILALGLLINLVEHSE 358 (361)
T ss_pred hHHHHHHHhHHHheeeCc
Confidence 556667777777776543
No 237
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.60 E-value=0.08 Score=55.53 Aligned_cols=42 Identities=31% Similarity=0.703 Sum_probs=35.4
Q ss_pred eecccccccCCC---ceecCCCchhcHHHHHHHHHHhhhCCC-CCCCCCC
Q 003530 33 FVCPLTKQVMRD---PVTLENGQTFEREAIEKWFKECRENGR-KPVCPLT 78 (813)
Q Consensus 33 ~~Cpi~~~~m~d---pv~~~~g~t~~r~~i~~~~~~~~~~~~-~~~CP~t 78 (813)
|.|||.++-=.| |+.++|||..+|.+|.+-... |. .+-||.|
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~n----g~~sfKCPYC 380 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKN----GSQSFKCPYC 380 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhC----CCeeeeCCCC
Confidence 999999998744 789999999999999999875 31 2678888
No 238
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=92.35 E-value=27 Score=41.28 Aligned_cols=193 Identities=13% Similarity=0.074 Sum_probs=121.4
Q ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHH--HcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhHHH
Q 003530 236 ILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMA--ENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVL 313 (813)
Q Consensus 236 i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~--~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~ 313 (813)
+...+..+.. +..+-++..|+.++..-++- ..+. .-+.++.|+++....+.++....+.+|...+.-+.-...
T Consensus 492 l~~~v~~l~~-~~~~~~ki~a~~~~~~~~~~----~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~a 566 (1005)
T KOG2274|consen 492 LNATVNALTM-DVPPPVKISAVRAFCGYCKV----KVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAA 566 (1005)
T ss_pred HHHHHHhhcc-CCCCchhHHHHHHHHhccCc----eeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhh
Confidence 3444554442 45566667777766655511 1111 225677888888888889998889999888874433333
Q ss_pred HHhhh-HHHHHHHHh--cCCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHH
Q 003530 314 VARTV-GSCLINIMK--SGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANV 390 (813)
Q Consensus 314 i~~~g-i~~Lv~lL~--~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL 390 (813)
..+.- .|.++.++. +.++.+...+-.++..|+....|...+.+. .||.++..|.....+ .+.....-++.+|.-+
T Consensus 567 s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~-~iPslisil~~~~~~-~~~~l~~~aidvLttv 644 (1005)
T KOG2274|consen 567 SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQER-LIPSLISVLQLNADK-APAGLCAIAIDVLTTV 644 (1005)
T ss_pred hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHH-HHHHHHHHHcCcccc-cCchhhHHHHHHHHHH
Confidence 33333 466666653 356666666666666666543443333333 789999999875422 2356677788888877
Q ss_pred HhcCCCCcccccCCCCccccchhhHHHHHHhh-cCCChHHHHHHHHHHHHcccC
Q 003530 391 VNSGHDFDSITVGPDNQTLVSEDIVHNLLHLI-SNTGPTIECKLLQVLVGLTSS 443 (813)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~ 443 (813)
.+..+..-. ......+.|++.++. .+++..+.+++-.+|..+...
T Consensus 645 vr~tp~pL~--------~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 645 LRNTPSPLP--------NLLICYAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred HhcCCCCcc--------HHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 776654422 123356677777765 477888888999999887765
No 239
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=92.28 E-value=11 Score=40.98 Aligned_cols=182 Identities=13% Similarity=0.080 Sum_probs=115.2
Q ss_pred HHHhcccCCCCHHHHHHHHHHHHhhccCCc----cHHHHHHcCChHHHHHHHccC-------CHHHHHHHHHHHHHhcCC
Q 003530 239 LVGMTSSKSENLLTVEKAEKTLANLEKCEN----NVRQMAENGRLQPLLTQILEG-------PQETKLSLAAFLGDLALN 307 (813)
Q Consensus 239 Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~----~~~~i~~~G~i~~Lv~lL~~~-------~~~~~~~a~~~L~~L~~~ 307 (813)
+..++. ..+.+-+-.|.-..-.++++++ |++.+.++=|.+.+=++|.++ +...+.-+..+|..+|..
T Consensus 16 ~~~L~~--~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~ 93 (698)
T KOG2611|consen 16 CLKLLK--GKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV 93 (698)
T ss_pred HHHHhc--ccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 444554 3344444445444555665543 677789998899998888764 234555677788888887
Q ss_pred chh--HHHHHhhhHHHHHHHHhcC-CH------HHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChh
Q 003530 308 SDV--KVLVARTVGSCLINIMKSG-NM------QAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMR 378 (813)
Q Consensus 308 ~~~--~~~i~~~gi~~Lv~lL~~~-~~------~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~ 378 (813)
++- ...|.. .||.|.+.+..+ ++ .+.+.+-.+|..++..+.....++..|+++.+.++-..++ -..
T Consensus 94 pElAsh~~~v~-~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~----~~~ 168 (698)
T KOG2611|consen 94 PELASHEEMVS-RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPD----GSH 168 (698)
T ss_pred hhhccCHHHHH-hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCC----Cch
Confidence 753 223332 389999988642 22 3789999999999999999999999999999987665543 122
Q ss_pred HHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhc-------CCChHHHHHHHHHHHHcc
Q 003530 379 LKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS-------NTGPTIECKLLQVLVGLT 441 (813)
Q Consensus 379 ~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~-------~~~~~~~~~a~~~L~~L~ 441 (813)
-..-++-++.-+...-..|.. .++.+..++. ..+...+...++.|..+-
T Consensus 169 d~alal~Vlll~~~~~~cw~e--------------~~~~flali~~va~df~~~~~a~KfElc~lL~~vl 224 (698)
T KOG2611|consen 169 DMALALKVLLLLVSKLDCWSE--------------TIERFLALIAAVARDFAVLHNALKFELCHLLSAVL 224 (698)
T ss_pred hHHHHHHHHHHHHHhcccCcC--------------CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 334455555544444443432 2333333332 245566777777776443
No 240
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=92.25 E-value=28 Score=41.17 Aligned_cols=222 Identities=13% Similarity=0.064 Sum_probs=144.4
Q ss_pred cCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhc-cCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHH
Q 003530 160 KSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLS-HELSREREEAVSLLYELSKSEALCEKIGSINGAILI 238 (813)
Q Consensus 160 ~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~ 238 (813)
.+..+.....+...+...+.....+...+. -.+...+..+. +..+..+..|+.+++..++-.-... ..++.+..
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~---~~p~ild~ 534 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLS---LQPMILDG 534 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccc---cchHHHHH
Confidence 345566666777777655543222221110 11223333333 3445567788888877763222111 24678888
Q ss_pred HHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHc--cCCHHHHHHHHHHHHHhcCCchhHHHHHh
Q 003530 239 LVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQIL--EGPQETKLSLAAFLGDLALNSDVKVLVAR 316 (813)
Q Consensus 239 Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~--~~~~~~~~~a~~~L~~L~~~~~~~~~i~~ 316 (813)
|..+.. ....++......+|...++.+.-.....++-..|..+.+.. +.++.+...+-.++..|+....+...+.+
T Consensus 535 L~qlas--~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e 612 (1005)
T KOG2274|consen 535 LLQLAS--KSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE 612 (1005)
T ss_pred HHHHcc--cccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH
Confidence 999887 56778888888999988887766667777777887777654 45777777777888888776666666777
Q ss_pred hhHHHHHHHHhcCC----HHHHHHHHHHHHHhhCC-c-ccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHH
Q 003530 317 TVGSCLINIMKSGN----MQAREAALKALNQISSC-E-PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANV 390 (813)
Q Consensus 317 ~gi~~Lv~lL~~~~----~~~~~~a~~aL~~Ls~~-~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL 390 (813)
.-+|.|+..|..+. .....-++..|-.+-++ + +--..++. -+.|++.+..-... +..+.+.+.++|+.+
T Consensus 613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~tlHsd----D~~tlQ~~~EcLra~ 687 (1005)
T KOG2274|consen 613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKITLHSD----DHETLQNATECLRAL 687 (1005)
T ss_pred HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhheeecC----ChHHHHhHHHHHHHH
Confidence 77899999998765 55667777777766653 2 32333333 36788888775432 467888888888887
Q ss_pred Hhc
Q 003530 391 VNS 393 (813)
Q Consensus 391 ~~~ 393 (813)
...
T Consensus 688 Is~ 690 (1005)
T KOG2274|consen 688 ISV 690 (1005)
T ss_pred Hhc
Confidence 665
No 241
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=92.02 E-value=0.24 Score=53.13 Aligned_cols=175 Identities=15% Similarity=0.103 Sum_probs=107.3
Q ss_pred HHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhcc----CCccHHHHHH---cCChHH
Q 003530 209 REEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEK----CENNVRQMAE---NGRLQP 281 (813)
Q Consensus 209 ~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~----~~~~~~~i~~---~G~i~~ 281 (813)
+..|...+.-+..|+..+...+-...+...+...+. +..-..++.+++++.|++. +-.+.....+ .-.+..
T Consensus 408 ~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~--d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~ 485 (728)
T KOG4535|consen 408 KAAASRALGVYVLHPCLRQDVIFVADAANAILMSLE--DKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLK 485 (728)
T ss_pred HHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhh--hHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 455555555556677777666555677777888887 6677889999999999842 1122111111 113333
Q ss_pred HHHHHcc---CCHHHHHHHHHHHHHhcCCch------hHHHHHhhhHHHHHH-HHhcCCHHHHHHHHHHHHHhhCCcccH
Q 003530 282 LLTQILE---GPQETKLSLAAFLGDLALNSD------VKVLVARTVGSCLIN-IMKSGNMQAREAALKALNQISSCEPSA 351 (813)
Q Consensus 282 Lv~lL~~---~~~~~~~~a~~~L~~L~~~~~------~~~~i~~~gi~~Lv~-lL~~~~~~~~~~a~~aL~~Ls~~~~~~ 351 (813)
++..-.. ....++.++.++|+|+...-+ ++..+.+ .+..++. ....+..+++.+++.++.||-.++.-.
T Consensus 486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~-~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~ 564 (728)
T KOG4535|consen 486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEE-SIQALISTVLTEAAMKVRWNACYAMGNLFKNPALP 564 (728)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHH-HHHhcccceecccccccchHHHHHHHHhhcCcccc
Confidence 4333322 256789999999999875211 1111111 1222222 223357789999999999999876432
Q ss_pred H--HHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHH
Q 003530 352 K--VLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANV 390 (813)
Q Consensus 352 ~--~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL 390 (813)
- .=...-+.+.|..++.+.. +..++.+|+++|..-
T Consensus 565 lq~~~wA~~~F~~L~~Lv~~~~----NFKVRi~AA~aL~vp 601 (728)
T KOG4535|consen 565 LQTAPWASQAFNALTSLVTSCK----NFKVRIRAAAALSVP 601 (728)
T ss_pred ccCCCchHHHHHHHHHHHHHhc----cceEeehhhhhhcCC
Confidence 1 1112335688888888754 578899999998643
No 242
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=91.97 E-value=0.77 Score=43.26 Aligned_cols=148 Identities=11% Similarity=0.159 Sum_probs=89.7
Q ss_pred HHHHHHhhhC--CChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCCCCHH
Q 003530 460 TISLVQFVEA--PQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLG 537 (813)
Q Consensus 460 i~~Lv~lL~~--~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~~~ 537 (813)
+..++..|.. ..+++|..+.-++..+-+....++.+.+. +.+-..+..... +....+..++..+-...++
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~------~~i~~~~~~~~~--d~~i~~~~~l~~lfp~~~d 76 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLLDAAREEFKEKIS------DFIESLLDEGEM--DSLIIAFSALTALFPGPPD 76 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHCCHHC--CHHHHHHHHHHHHCTTTHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHHHHhHHHHHHHHH------HHHHHHHccccc--hhHHHHHHHHHHHhCCCHH
Confidence 3444444443 45678877776666553212222222222 223333333333 5667777777777666777
Q ss_pred HHHHHH-hcCcHHHHHHHhhhhccccccCCccchhhhHhHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHHhcCCch
Q 003530 538 LTRQML-DEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLD 616 (813)
Q Consensus 538 ~~~~l~-~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~ 616 (813)
....+. ..|.++.+..+.... ..+..+...++..|..-+ .|..++..+.+++ ++.|.++++.+.++
T Consensus 77 v~~~l~~~eg~~~~l~~~~~~~--------~~~~~~~~~~lell~aAc----~d~~~r~~I~~~~-~~~L~~~~~~~~~~ 143 (157)
T PF11701_consen 77 VGSELFLSEGFLESLLPLASRK--------SKDRKVQKAALELLSAAC----IDKSCRTFISKNY-VSWLKELYKNSKDD 143 (157)
T ss_dssp HHHHHCCTTTHHHHHHHHHH-C--------TS-HHHHHHHHHHHHHHT----TSHHHHHCCHHHC-HHHHHHHTTTCC-H
T ss_pred HHHHHHhhhhHHHHHHHHHhcc--------cCCHHHHHHHHHHHHHHH----ccHHHHHHHHHHH-HHHHHHHHccccch
Confidence 776665 667777777777620 124556667777777655 5888888877655 68898998655366
Q ss_pred H-HHHHHHHHHhh
Q 003530 617 K-VQMVSATALEN 628 (813)
Q Consensus 617 ~-vk~~Aa~aL~~ 628 (813)
. +|..|+.+|+.
T Consensus 144 ~~ir~~A~v~L~K 156 (157)
T PF11701_consen 144 SEIRVLAAVGLCK 156 (157)
T ss_dssp H-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 6 89999999865
No 243
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.93 E-value=9.2 Score=44.67 Aligned_cols=151 Identities=11% Similarity=0.098 Sum_probs=88.2
Q ss_pred hHHHHHHHHhc--------CCHHHHHHHHHHHHHhhCCcccHHHHHHc--------CChHHHHHHHhccCCCCCChhHHH
Q 003530 318 VGSCLINIMKS--------GNMQAREAALKALNQISSCEPSAKVLIHA--------GILPPLVKDLFTVGSNHLPMRLKE 381 (813)
Q Consensus 318 gi~~Lv~lL~~--------~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~--------g~i~~Lv~lL~~~~~~~~~~~~~~ 381 (813)
|+..++++... +..++...|+.+|.-+..-|..+..+..+ .||..++..-.... .-.+++++.
T Consensus 602 ~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~-~i~Dpei~~ 680 (1516)
T KOG1832|consen 602 GVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSN-SIVDPEIIQ 680 (1516)
T ss_pred HHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccc-cccCHHHHH
Confidence 35566665532 23466778888888888878777776642 24444443322211 123689999
Q ss_pred HHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhc-CCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCH
Q 003530 382 VSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS-NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGAT 460 (813)
Q Consensus 382 ~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i 460 (813)
.|+.++.|+...++......+.. ...++| -+. ..+. .+.....++. .+.++..++...||
T Consensus 681 ~AL~vIincVc~pp~~r~s~i~~---v~S~~g-~~r--~~l~~~~ks~~le~~-------------l~~mw~~Vr~ndGI 741 (1516)
T KOG1832|consen 681 PALNVIINCVCPPPTTRPSTIVA---VGSQSG-DRR--IFLGAGTKSAKLEQV-------------LRQMWEAVRGNDGI 741 (1516)
T ss_pred HHHhhhheeecCCCCcchhhhhh---ccccCC-Ccc--ccccCCCchHHHHHH-------------HHHHHHHHhcCccH
Confidence 99999999987764432211000 000000 000 0011 1111111222 13566778888999
Q ss_pred HHHHHhhhCCCh-----HHHHHHHHHHHHhCCC
Q 003530 461 ISLVQFVEAPQN-----DLRLASIELIQNLSPH 488 (813)
Q Consensus 461 ~~Lv~lL~~~~~-----~v~~~A~~~L~~Ls~~ 488 (813)
..|++||+-..| -+|..|+++|..|+++
T Consensus 742 kiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~ 774 (1516)
T KOG1832|consen 742 KILLKLLQYKNPPTTADCIRALACRVLLGLARD 774 (1516)
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHhccccC
Confidence 999999998775 5789999999999964
No 244
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=91.83 E-value=0.077 Score=54.88 Aligned_cols=48 Identities=15% Similarity=0.384 Sum_probs=40.3
Q ss_pred eecccccccCCCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCC
Q 003530 33 FVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRS 84 (813)
Q Consensus 33 ~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~ 84 (813)
-.|-||-+-=+|--+=||||-.|-.|+..|..+ ++. .+||+|+..+.-
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~s---d~g-q~CPFCRcEIKG 417 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDS---DEG-QTCPFCRCEIKG 417 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhccc---CCC-CCCCceeeEecc
Confidence 479999998888777899999999999999975 333 699999986643
No 245
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=91.72 E-value=0.048 Score=61.23 Aligned_cols=47 Identities=19% Similarity=0.412 Sum_probs=35.8
Q ss_pred CceecccccccCCCcee---cCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCC
Q 003530 31 DAFVCPLTKQVMRDPVT---LENGQTFEREAIEKWFKECRENGRKPVCPLTQKELR 83 (813)
Q Consensus 31 ~~~~Cpi~~~~m~dpv~---~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~ 83 (813)
.+-.||+|..-+.|-.+ .+|+|.||..||..|..- ..+||+|+..|.
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~------aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC------AQTCPVDRGEFG 171 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh------cccCchhhhhhh
Confidence 34568888777777654 578999999999999874 478999987654
No 246
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.66 E-value=13 Score=43.40 Aligned_cols=332 Identities=14% Similarity=0.092 Sum_probs=171.7
Q ss_pred CcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHH------cC
Q 003530 204 ELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAE------NG 277 (813)
Q Consensus 204 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~------~G 277 (813)
.+....-.+...|+.|+.+......++. .|||..|+.+=+ ..+...-...+|+.++........+.. ..
T Consensus 365 ~d~~l~~~~~k~~~~l~~h~kfa~~fv~-~~gi~kll~vpr----~s~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~ 439 (1516)
T KOG1832|consen 365 DDSPLLPDVMKLICALAAHRKFAAMFVE-RRGILKLLAVPR----VSETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQ 439 (1516)
T ss_pred ccccccHHHHHHHHHHHHhhHHHHHHHH-hhhhHHHhcCCC----chhhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHH
Confidence 3444566788888999888888777764 577776665543 334445556677777665543332221 22
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhHHHHHh-hhHHHHHHHHhc------C-------------CHHHHHHH
Q 003530 278 RLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVAR-TVGSCLINIMKS------G-------------NMQAREAA 337 (813)
Q Consensus 278 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~gi~~Lv~lL~~------~-------------~~~~~~~a 337 (813)
++..-+.+|.-.....+.+++......-.....-..+.. .|+..|+.+++. . +.......
T Consensus 440 vv~~~~~l~~cs~~~~~~~~~~ff~~~f~frail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~ht 519 (1516)
T KOG1832|consen 440 VVKLAIELLDCSQDQARKNSALFFAAAFVFRAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHT 519 (1516)
T ss_pred HHHHHHHHHhcchhhccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhh
Confidence 334444555443333333333222221111111122222 246666666543 0 11233455
Q ss_pred HHHHHHh-----hCCccc-HHHHHHcCChHHHHHHHhccC-CCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCcccc
Q 003530 338 LKALNQI-----SSCEPS-AKVLIHAGILPPLVKDLFTVG-SNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLV 410 (813)
Q Consensus 338 ~~aL~~L-----s~~~~~-~~~i~~~g~i~~Lv~lL~~~~-~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~ 410 (813)
+.+|+.- ...-++ ++.-+..|+++..+.-+.... ....+....+...+-+-.+....+......... ..-+.
T Consensus 520 C~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~-aenfl 598 (1516)
T KOG1832|consen 520 CFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPA-AENFL 598 (1516)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchH-HHHHH
Confidence 5555432 221122 444445566665555443321 111123334444444444433333111100000 01244
Q ss_pred chhhHHHHHHhhcC--------CChHHHHHHHHHHHHcccCCCchHHHHHHHHhc--------CCHHHHHHhhhCC----
Q 003530 411 SEDIVHNLLHLISN--------TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSS--------GATISLVQFVEAP---- 470 (813)
Q Consensus 411 ~~~~v~~Lv~lL~~--------~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~--------g~i~~Lv~lL~~~---- 470 (813)
.-+++..++++... +-.++..+|+.+|+-+..-|. ++..+..+ .|+..++..-...
T Consensus 599 kls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~----iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~ 674 (1516)
T KOG1832|consen 599 KLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPD----IQKALAHATLSNNRAYDGIAIILDAANGSNSIV 674 (1516)
T ss_pred HhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecch----HHHHHHHHHhhcccccCceEEEeeccccccccc
Confidence 45677777777652 123566678888877776665 33333221 2444444322222
Q ss_pred ChHHHHHHHHHHHHhCCCCC----------------------------------HHHHHHHhcccccHHHHHHhhhcCCC
Q 003530 471 QNDLRLASIELIQNLSPHMG----------------------------------HELADALRGAVGQLGSLIRVISENVG 516 (813)
Q Consensus 471 ~~~v~~~A~~~L~~Ls~~~~----------------------------------~~~~~~l~~~~g~i~~Lv~ll~~~~~ 516 (813)
+++++..|+.++.++....+ ...++.++.. .+|..|+++|+-..+
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~n-dGIkiLl~Ll~~k~P 753 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGN-DGIKILLKLLQYKNP 753 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcC-ccHHHHHHHHhccCC
Confidence 56889999988887641110 0123445555 899999999986655
Q ss_pred ---ChHHHHHHHHHHhcCCCCCHHHHHHHHhcCc
Q 003530 517 ---ISKEQAAAVGLLAELPERDLGLTRQMLDEGA 547 (813)
Q Consensus 517 ---~~~~~~~a~~~L~~L~~~~~~~~~~l~~~g~ 547 (813)
-+.+|.-|+.+|-.|+. +..+++.+.+--.
T Consensus 754 ~t~aD~IRalAc~~L~GLaR-~~tVrQIltKLpL 786 (1516)
T KOG1832|consen 754 PTTADCIRALACRVLLGLAR-DDTVRQILTKLPL 786 (1516)
T ss_pred CCcHHHHHHHHHHHHhcccc-CcHHHHHHHhCcc
Confidence 24788899999988887 6677777655433
No 247
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=91.25 E-value=0.24 Score=39.01 Aligned_cols=44 Identities=30% Similarity=0.539 Sum_probs=34.2
Q ss_pred eecccccccCC----Ccee-cCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCC
Q 003530 33 FVCPLTKQVMR----DPVT-LENGQTFEREAIEKWFKECRENGRKPVCPLTQKEL 82 (813)
Q Consensus 33 ~~Cpi~~~~m~----dpv~-~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l 82 (813)
-+||-|+-=|. =||+ =-|+|.|--.||.+|++. +..||.++++.
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T------k~~CPld~q~w 80 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT------KGVCPLDRQTW 80 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh------CCCCCCCCcee
Confidence 56888877661 1344 478999999999999986 57899998864
No 248
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.22 E-value=8.8 Score=45.54 Aligned_cols=279 Identities=15% Similarity=0.162 Sum_probs=151.4
Q ss_pred HHHHHHhhcCCcccccccccCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCc----
Q 003530 130 KYVQYFCQSSRSNKHVVHNSELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHEL---- 205 (813)
Q Consensus 130 ~~l~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~---- 205 (813)
+.|..+.+.+.+|...+.++.++..++.++- +.+-|..-++.+..|...++.. +.+.-+-.+|..|+++-
T Consensus 664 DcLisllKnnteNqklFreanGvklilpfli--ndehRSslLrivscLitvdpkq----vhhqelmalVdtLksgmvt~I 737 (2799)
T KOG1788|consen 664 DCLISLLKNNTENQKLFREANGVKLILPFLI--NDEHRSSLLRIVSCLITVDPKQ----VHHQELMALVDTLKSGMVTRI 737 (2799)
T ss_pred HHHHHHHhccchhhHHHHhhcCceEEEEeee--chHHHHHHHHHHHHHhccCccc----ccHHHHHHHHHHHHhcceecc
Confidence 4567778888999999999998888887773 3344555566666665544321 22334667888888742
Q ss_pred --------HHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCC--------CCHHHHHHHHHHHHhh-----c
Q 003530 206 --------SREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKS--------ENLLTVEKAEKTLANL-----E 264 (813)
Q Consensus 206 --------~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s--------~~~~~~~~a~~~L~~L-----~ 264 (813)
.+.......++|.....+...+..+.+.||...|...|-... +|.-+-..-...|+.+ +
T Consensus 738 sgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavc 817 (2799)
T KOG1788|consen 738 SGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVC 817 (2799)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHh
Confidence 123556677888887555444455556788887777664211 1111111222223222 3
Q ss_pred cCCccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCch--hHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 003530 265 KCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSD--VKVLVARTVGSCLINIMKSGNMQAREAALKALN 342 (813)
Q Consensus 265 ~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~--~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~ 342 (813)
.++.|+..+-..=--+.+..+|+.. +-|+.+.+ .-..+.+.....++. +.-.--..|+..+.
T Consensus 818 enasNrmklhtvITsqtftsLLres------------gllcvnler~viqlllElalevlvp----pfLtSEsaAcaeVf 881 (2799)
T KOG1788|consen 818 ENASNRMKLHTVITSQTFTSLLRES------------GLLCVNLERHVIQLLLELALEVLVP----PFLTSESAACAEVF 881 (2799)
T ss_pred hcchhhhheeeeeeHHHHHHHHHHh------------ccceecchHHHHHHHHHHHHHhhCC----chhhhhHHHHHHHh
Confidence 3444444332211122233333211 11111211 111222222111111 11111122333333
Q ss_pred Hhh----------C-CcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccc
Q 003530 343 QIS----------S-CEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVS 411 (813)
Q Consensus 343 ~Ls----------~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~ 411 (813)
.+- . ....++.+..+|++..|++.+-... +..+-.-+..|-.+++.++.... .+.+
T Consensus 882 elednifavntPsGqfnpdk~~iynagavRvlirslLlny-----pK~qlefl~lleSlaRaspfnae--------lltS 948 (2799)
T KOG1788|consen 882 ELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNY-----PKLQLEFLNLLESLARASPFNAE--------LLTS 948 (2799)
T ss_pred hcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhC-----hHHHHHHHHHHHHHhhcCCCchh--------hhhc
Confidence 321 1 1145668889999999998776543 67787888888888887665544 5677
Q ss_pred hhhHHHHHHhhc---CCChHHHHHHHHHHHHcccC
Q 003530 412 EDIVHNLLHLIS---NTGPTIECKLLQVLVGLTSS 443 (813)
Q Consensus 412 ~~~v~~Lv~lL~---~~~~~~~~~a~~~L~~L~~~ 443 (813)
.|+++.|++++. +++.....++..++..|+..
T Consensus 949 ~gcvellleIiypflsgsspfLshalkIvemLgay 983 (2799)
T KOG1788|consen 949 AGCVELLLEIIYPFLSGSSPFLSHALKIVEMLGAY 983 (2799)
T ss_pred ccHHHHHHHHhhhhhcCCchHhhccHHHHHHHhhc
Confidence 899999988875 45555666666666555554
No 249
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=90.94 E-value=14 Score=40.26 Aligned_cols=129 Identities=17% Similarity=0.199 Sum_probs=97.6
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccCc---chhhhhhcCCCHHHHHHHhccCc-------HHHHHHHHHHHHHhhcCch
Q 003530 155 IIDMLKSSSRKVRCTALETLRIVVEEDD---DNKEILGQGDTVRTIVKFLSHEL-------SREREEAVSLLYELSKSEA 224 (813)
Q Consensus 155 Lv~lL~s~~~~~~~~al~~L~~L~~~~~---~~~~~i~~~g~i~~Lv~lL~~~~-------~~~~~~a~~~L~~ls~~~~ 224 (813)
+..+++..+.+-+..|+-...++++.++ .+|+.+.++-+.+.+-++|.+++ .-.+.-++.+|.-.+..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 5566666677778888888888887653 36788999999999999997543 2346778888888887775
Q ss_pred hH--hHHhhhhchHHHHHHhcccCCCCHH------HHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHc
Q 003530 225 LC--EKIGSINGAILILVGMTSSKSENLL------TVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQIL 287 (813)
Q Consensus 225 ~~--~~i~~~~g~i~~Lv~lL~~~s~~~~------~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~ 287 (813)
.. +.++ ..||.|..++.. ..+++ ..+.+-.+|...+..+.....+...|+++.+-++-.
T Consensus 96 lAsh~~~v---~~IP~llev~~~-~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 96 LASHEEMV---SRIPLLLEVMSK-GIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred hccCHHHH---HhhhHHHHHHHh-cCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHh
Confidence 32 3333 568999998874 33443 778899999999999999999999999999986543
No 250
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=90.67 E-value=0.95 Score=49.74 Aligned_cols=98 Identities=19% Similarity=0.143 Sum_probs=71.5
Q ss_pred ccchHHHHHh-hccCchhHHHHHHHHHHhhhhcCcchhhHHHHHHhhcCcHHHHHHHhhcCChHHHHHHHHHHHHHHcch
Q 003530 683 GHAVEKLIAL-LDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTD 761 (813)
Q Consensus 683 ~gai~~Lv~l-L~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~~a~~aL~~i~~~~ 761 (813)
.|+|..|+.. ..+.|++||.+|..||+-...++. +.+...+++|.++.++.+|...+-+|+..+...
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~------------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~ 617 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR------------DLLVGTVELLSESHNFHVRAGVAVALGIACAGT 617 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecCc------------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCC
Confidence 4567777777 678899999999999998887755 456777788877888999888888888776431
Q ss_pred hhhhhhcCCCcchHHHHHHhhhcCchhHHHHHHHHHHh
Q 003530 762 DIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHI 799 (813)
Q Consensus 762 ~~~~~~~~~~~~~~~Lv~~l~~~~~~~~~~Aa~~L~~l 799 (813)
++......|-.+..+.+.-+|+.|..++..+
T Consensus 618 -------G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mI 648 (926)
T COG5116 618 -------GDKVATDILEALMYDTNDFVRQSAMIAVGMI 648 (926)
T ss_pred -------ccHHHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 1122234566667777788888887777644
No 251
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=90.36 E-value=31 Score=37.69 Aligned_cols=102 Identities=10% Similarity=0.084 Sum_probs=76.2
Q ss_pred hhc-CCCHHHHHHHhccCc---HHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcc-c-CCCCHHHHHHHHHHHH
Q 003530 188 LGQ-GDTVRTIVKFLSHEL---SREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTS-S-KSENLLTVEKAEKTLA 261 (813)
Q Consensus 188 i~~-~g~i~~Lv~lL~~~~---~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~-~-~s~~~~~~~~a~~~L~ 261 (813)
+.+ ......|..++++.. +.+-..|+.++.....++-..-.+..+.|.++.+++.+. . --.+.++....-.+|.
T Consensus 101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~ 180 (379)
T PF06025_consen 101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS 180 (379)
T ss_pred ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence 444 444556666666543 455678888888887776666666678899998888776 2 1345677777778888
Q ss_pred hhccCCccHHHHHHcCChHHHHHHHccC
Q 003530 262 NLEKCENNVRQMAENGRLQPLLTQILEG 289 (813)
Q Consensus 262 ~L~~~~~~~~~i~~~G~i~~Lv~lL~~~ 289 (813)
.+|-+......+.+.+.++.+++.+.+.
T Consensus 181 AicLN~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 181 AICLNNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred HHhcCHHHHHHHHhcChHHHHHHHhCCH
Confidence 8999999999999999999999888764
No 252
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=90.36 E-value=0.25 Score=47.67 Aligned_cols=59 Identities=19% Similarity=0.114 Sum_probs=42.9
Q ss_pred CceecccccccCCCcee-cCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCc--CCCCCCCcccHhh
Q 003530 31 DAFVCPLTKQVMRDPVT-LENGQTFEREAIEKWFKECRENGRKPVCPLTQK--ELRSTDLNPSIAL 93 (813)
Q Consensus 31 ~~~~Cpi~~~~m~dpv~-~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~--~l~~~~l~pn~~l 93 (813)
-+.+||||.+...-|++ ..|+|-|+|..|.+++.- -....||.-.+ ......+..++.|
T Consensus 188 ~~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~----~~trvcp~~~Csq~~~~~~~v~d~Il 249 (275)
T COG5627 188 LSNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQV----ECTRVCPRLICSQKEVVDPYVCDHIL 249 (275)
T ss_pred hcccCCcccCcchhHHHHhhhcccccHHHHHHHhcC----CceeecchhhcchheeccchhhhHHH
Confidence 35899999999999987 799999999999999962 11367886543 3333344444444
No 253
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=90.35 E-value=12 Score=41.50 Aligned_cols=165 Identities=17% Similarity=0.223 Sum_probs=116.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCC-CC
Q 003530 319 GSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGH-DF 397 (813)
Q Consensus 319 i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~-~~ 397 (813)
...+.+++.+++...+..+..-|..++..+.-...++...++..|..++.+.... ....+...++.++..+-.+.. .|
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~-~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVC-MSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccc-hHHHHHHHHHHHHHHHHhhceeee
Confidence 3567788888888888889999999999999999999999999999999875411 134566666667666655433 23
Q ss_pred cccccCCCCccccchhhHHHHHHhhc--CCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHH
Q 003530 398 DSITVGPDNQTLVSEDIVHNLLHLIS--NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLR 475 (813)
Q Consensus 398 ~~~~~~~~~~~l~~~~~v~~Lv~lL~--~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~ 475 (813)
.. ....+|.....+.+ ..+..+-..|+..|-.+..... .....+.+.--++.|+..+..++..++
T Consensus 164 ~~----------~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~---~~~~~v~eev~i~~li~hlq~~n~~i~ 230 (713)
T KOG2999|consen 164 ES----------VSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSD---TLRQLVAEEVPIETLIRHLQVSNQRIQ 230 (713)
T ss_pred ee----------cccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCCh---HHHHHHHhcCcHHHHHHHHHhcchHHH
Confidence 22 22344544444443 2345666778888888777654 345567788889999999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHH
Q 003530 476 LASIELIQNLSPHMGHELADAL 497 (813)
Q Consensus 476 ~~A~~~L~~Ls~~~~~~~~~~l 497 (813)
..|..++..|-...++.....+
T Consensus 231 ~~aial~nal~~~a~~~~R~~~ 252 (713)
T KOG2999|consen 231 TCAIALLNALFRKAPDDKRFEM 252 (713)
T ss_pred HHHHHHHHHHHhhCChHHHHHH
Confidence 8888888877644444433333
No 254
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.22 E-value=36 Score=39.25 Aligned_cols=107 Identities=15% Similarity=0.107 Sum_probs=70.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCc
Q 003530 319 GSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFD 398 (813)
Q Consensus 319 i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~ 398 (813)
+..+++-..+++..++..++..|..|..+......-+-.+....|..-+.+ ..+.++..|+-+|..+-..+.+..
T Consensus 87 f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~D-----rep~VRiqAv~aLsrlQ~d~~dee 161 (892)
T KOG2025|consen 87 FYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKD-----REPNVRIQAVLALSRLQGDPKDEE 161 (892)
T ss_pred HHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhc-----cCchHHHHHHHHHHHHhcCCCCCc
Confidence 455555556678889999999999998854444443444455555444443 248999999999988754332221
Q ss_pred ccccCCCCccccchhhHHHHHHhhc-CCChHHHHHHHHHHHHcccCCCc
Q 003530 399 SITVGPDNQTLVSEDIVHNLLHLIS-NTGPTIECKLLQVLVGLTSSPTT 446 (813)
Q Consensus 399 ~~~~~~~~~~l~~~~~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~ 446 (813)
..++..++.+++ ++++++|+.+ |.+++-++.+
T Consensus 162 -------------~~v~n~l~~liqnDpS~EVRRaa---LsnI~vdnsT 194 (892)
T KOG2025|consen 162 -------------CPVVNLLKDLIQNDPSDEVRRAA---LSNISVDNST 194 (892)
T ss_pred -------------ccHHHHHHHHHhcCCcHHHHHHH---HHhhccCccc
Confidence 356778888888 5788999876 4555555443
No 255
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.11 E-value=0.22 Score=51.74 Aligned_cols=50 Identities=18% Similarity=0.343 Sum_probs=34.0
Q ss_pred CCceecccccccCC---Cceec-CCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCC
Q 003530 30 YDAFVCPLTKQVMR---DPVTL-ENGQTFEREAIEKWFKECRENGRKPVCPLTQKEL 82 (813)
Q Consensus 30 ~~~~~Cpi~~~~m~---dpv~~-~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l 82 (813)
|....|.||-+.+- |---+ .|||+|.-.|+.+||+-+ ....+||+|+-.+
T Consensus 2 pi~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~---Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 2 PIMAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGD---PSNRGCPICQIKL 55 (465)
T ss_pred CccceeeEeccCCccccccccccchhhHHHHHHHHHHHccC---CccCCCCceeecc
Confidence 34578999965541 11114 499999999999999852 2225899998333
No 256
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=89.99 E-value=2.7 Score=40.87 Aligned_cols=110 Identities=20% Similarity=0.122 Sum_probs=76.3
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-cchhhhhhcCCCHHHHHHHhcc---------CcHHHHHHHHHHHHHhh
Q 003530 151 LIPMIIDMLKSSSRKVRCTALETLRIVVEED-DDNKEILGQGDTVRTIVKFLSH---------ELSREREEAVSLLYELS 220 (813)
Q Consensus 151 ~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~~---------~~~~~~~~a~~~L~~ls 220 (813)
....+++.|.+..... ..+..|...-..+ ..--..+.+.||+..|+.+|.. .+......++.+|..+.
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 3455677776554332 2233333222222 2334456678999999999852 34467888999999999
Q ss_pred cCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhc
Q 003530 221 KSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLE 264 (813)
Q Consensus 221 ~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~ 264 (813)
.+......+...++++..|+..|. +.+..++..++.+|..+|
T Consensus 145 n~~~G~~~v~~~~~~v~~i~~~L~--s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NTKYGLEAVLSHPDSVNLIALSLD--SPNIKTRKLALEILAALC 186 (187)
T ss_dssp SSHHHHHHHHCSSSHHHHHHHT----TTSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCcHHHHHHHHHHC--CCCHHHHHHHHHHHHHHH
Confidence 999989999888999999999999 899999999999998765
No 257
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.93 E-value=56 Score=40.03 Aligned_cols=220 Identities=14% Similarity=0.195 Sum_probs=128.4
Q ss_pred CCHHHHHHHHHHHHHhcCCchhHHHHHhhh--H-HHHHHHHhcCCHHHHHHHHHHHHHhhCC-c-ccHHHHHHcCChHHH
Q 003530 289 GPQETKLSLAAFLGDLALNSDVKVLVARTV--G-SCLINIMKSGNMQAREAALKALNQISSC-E-PSAKVLIHAGILPPL 363 (813)
Q Consensus 289 ~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g--i-~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~-~-~~~~~i~~~g~i~~L 363 (813)
.+..+|..+-++|..++..+.........- + ..|.+-+++-....+...+.+|..|-.. + +....+.. .|+-+
T Consensus 666 ~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k--~I~Ev 743 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK--LIPEV 743 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH--HHHHH
Confidence 378899999999999988766655555542 2 5555555555666777777777776552 2 33333222 23333
Q ss_pred HHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCC--ChHHHHHH--HHHHHH
Q 003530 364 VKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNT--GPTIECKL--LQVLVG 439 (813)
Q Consensus 364 v~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~--~~~~~~~a--~~~L~~ 439 (813)
+-.++. .+...++.|..+|..++........ .+. . ....+..++..+..+ ....+..+ +-++..
T Consensus 744 IL~~Ke-----~n~~aR~~Af~lL~~i~~i~~~~d~----g~e-~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~ 811 (1176)
T KOG1248|consen 744 ILSLKE-----VNVKARRNAFALLVFIGAIQSSLDD----GNE-P--ASAILNEFLSIISAGLVGDSTRVVASDIVAITH 811 (1176)
T ss_pred HHhccc-----ccHHHHhhHHHHHHHHHHHHhhhcc----ccc-c--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHH
Confidence 333343 3578889999999888841110000 000 0 123556666665533 22222222 333333
Q ss_pred cccCCC--chHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCC
Q 003530 440 LTSSPT--TVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGI 517 (813)
Q Consensus 440 L~~~~~--~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~ 517 (813)
+..... ....... +.+..+..+|.+.+++++..|+..+..+....+........+ ..++.+..++.+.+.
T Consensus 812 il~e~~~~ld~~~l~-----~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~--~LL~sll~ls~d~k~- 883 (1176)
T KOG1248|consen 812 ILQEFKNILDDETLE-----KLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLE--ELLPSLLALSHDHKI- 883 (1176)
T ss_pred HHHHHhccccHHHHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHH--HHHHHHHHHHHhhhH-
Confidence 333211 0011122 235666678889999999999999998886666665544443 377788887777664
Q ss_pred hHHHHHHHHHHhcC
Q 003530 518 SKEQAAAVGLLAEL 531 (813)
Q Consensus 518 ~~~~~~a~~~L~~L 531 (813)
.++...-.+|-.|
T Consensus 884 -~~r~Kvr~LlekL 896 (1176)
T KOG1248|consen 884 -KVRKKVRLLLEKL 896 (1176)
T ss_pred -HHHHHHHHHHHHH
Confidence 7777777666554
No 258
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=89.75 E-value=18 Score=41.04 Aligned_cols=121 Identities=21% Similarity=0.276 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCc-hhHhHHhhhhchHHHHH
Q 003530 162 SSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSE-ALCEKIGSINGAILILV 240 (813)
Q Consensus 162 ~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv 240 (813)
++...+.-|+..+.....+=++..+ .++..++.|..+.+..+|.+|+..|..++++. +...+| ...|+
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv------aDvL~ 102 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV------ADVLV 102 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH------HHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH------HHHHH
Confidence 4566777777777777665544333 45777888888888899999999999999863 444444 45789
Q ss_pred HhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHc---cCCHHHHHHHHHHHH
Q 003530 241 GMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQIL---EGPQETKLSLAAFLG 302 (813)
Q Consensus 241 ~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~---~~~~~~~~~a~~~L~ 302 (813)
.||. ++++.....+-.+|..|-.. --.|.+..|...+. ++++.+++.+...|.
T Consensus 103 QlL~--tdd~~E~~~v~~sL~~ll~~-------d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 103 QLLQ--TDDPVELDAVKNSLMSLLKQ-------DPKGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HHTT-----HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHHh--cccHHHHHHHHHHHHHHHhc-------CcHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 9998 67766666565666554211 11234445555554 567778888877664
No 259
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=89.44 E-value=20 Score=38.94 Aligned_cols=242 Identities=16% Similarity=0.114 Sum_probs=123.0
Q ss_pred HHHHHHHhc-cCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHh-hccCCccHH
Q 003530 194 VRTIVKFLS-HELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLAN-LEKCENNVR 271 (813)
Q Consensus 194 i~~Lv~lL~-~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~-L~~~~~~~~ 271 (813)
|..++.=|. +.....|+.++.-|..-..+++.+..+. ..|.+..+++.+....+++ +...++.++.. ++.+..+..
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~r-a~g~~~~l~~~l~~~~~d~-~~~l~~a~i~~~l~~d~~~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFR-AHGLVKRLFKALSDAPDDD-ILALATAAILYVLSRDGLNMH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHH-HcCcHHHHHHHhccccchH-HHHHHHHHHHHHHccCCcchh
Confidence 344444444 3345668888888888888999999885 5799999999996323333 44444444444 455544444
Q ss_pred HHHHcCChHHHHHHHccC-CHHHHHHHHHHHHHhcCCchhHHHHHhhhHHHHHHHHh---------cCCHHHHHHHHHHH
Q 003530 272 QMAENGRLQPLLTQILEG-PQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMK---------SGNMQAREAALKAL 341 (813)
Q Consensus 272 ~i~~~G~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~gi~~Lv~lL~---------~~~~~~~~~a~~aL 341 (813)
.+.+.+.+..++.++... ..+...... .....+-..+.+.-+...-+++. .....-+..|..+|
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~l 174 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLAL 174 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchh------hhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHH
Confidence 445556666667777711 000000000 00000000111111111122221 11223355666666
Q ss_pred HHhh--------C---C----cccHHHHHHcCChHHHHHHHhc----cC----C---CCCChhHHHHHHHHHHHHHhcCC
Q 003530 342 NQIS--------S---C----EPSAKVLIHAGILPPLVKDLFT----VG----S---NHLPMRLKEVSATILANVVNSGH 395 (813)
Q Consensus 342 ~~Ls--------~---~----~~~~~~i~~~g~i~~Lv~lL~~----~~----~---~~~~~~~~~~a~~~L~nL~~~~~ 395 (813)
-.++ . . +--++.+...|++..++.++.. .. . .......-+.+..+|-|.+....
T Consensus 175 e~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~ 254 (361)
T PF07814_consen 175 ESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSE 254 (361)
T ss_pred HHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCc
Confidence 6663 1 1 1225567778899999999862 11 0 01122344677888888776555
Q ss_pred CCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCC
Q 003530 396 DFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPT 445 (813)
Q Consensus 396 ~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~ 445 (813)
..+..........+ ......+........+.+...+++++.|++.++.
T Consensus 255 ~nq~~l~~~~~~~l--~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~ 302 (361)
T PF07814_consen 255 ENQSYLLSHRSSLL--PQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNP 302 (361)
T ss_pred cchHHHHHhcccch--HHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCc
Confidence 44332111110000 1112222222223334556778999999998863
No 260
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.31 E-value=0.24 Score=52.28 Aligned_cols=54 Identities=15% Similarity=0.312 Sum_probs=40.8
Q ss_pred CCCceecccccccCCCce-----e---cCCCchhcHHHHHHHHHHhh-hCCCCCCCCCCCcCC
Q 003530 29 IYDAFVCPLTKQVMRDPV-----T---LENGQTFEREAIEKWFKECR-ENGRKPVCPLTQKEL 82 (813)
Q Consensus 29 ~~~~~~Cpi~~~~m~dpv-----~---~~~g~t~~r~~i~~~~~~~~-~~~~~~~CP~t~~~l 82 (813)
.-.+..|=||++...+++ . .+|.|+||-.||.+|-...+ .......||+|+...
T Consensus 158 ~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 158 KSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred ccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 346799999999999998 4 56999999999999985311 011127899998653
No 261
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=89.14 E-value=30 Score=35.85 Aligned_cols=200 Identities=12% Similarity=0.100 Sum_probs=136.1
Q ss_pred ccccCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhc--CCCHHHHHHHhcc-C-cHHHHHHHHHHHHHhhc
Q 003530 146 VHNSELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQ--GDTVRTIVKFLSH-E-LSREREEAVSLLYELSK 221 (813)
Q Consensus 146 i~~~g~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~--~g~i~~Lv~lL~~-~-~~~~~~~a~~~L~~ls~ 221 (813)
+.++|....|+..|...+-+.+..++....++-..+-..|...++ ..-.+.+-.++.. . .++.--.+-..|.+..+
T Consensus 75 f~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcir 154 (342)
T KOG1566|consen 75 FYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIR 154 (342)
T ss_pred HHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHh
Confidence 456788999999998888888888888887775543333322221 0112222222322 2 24555566677888888
Q ss_pred CchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCc-cHHHHHHcCC----hHHHHHHHccCCHHHHHH
Q 003530 222 SEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCEN-NVRQMAENGR----LQPLLTQILEGPQETKLS 296 (813)
Q Consensus 222 ~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~G~----i~~Lv~lL~~~~~~~~~~ 296 (813)
++...+.|.. ..-......... .++-++...|..+...+-...+ ....+..... .+.--.+|.+++.-++..
T Consensus 155 he~LakiiL~-s~~~~~FF~~vq--~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq 231 (342)
T KOG1566|consen 155 HEFLAKIILE-STNFEKFFLYVQ--LPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ 231 (342)
T ss_pred hHHHHHHHHc-chhHHHHHHHHh--ccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence 8777777754 355566666666 5677888888888888744332 3344444333 233556788999999999
Q ss_pred HHHHHHHhcCCchhHHHHHhh-----hHHHHHHHHhcCCHHHHHHHHHHHHHhhCCc
Q 003530 297 LAAFLGDLALNSDVKVLVART-----VGSCLINIMKSGNMQAREAALKALNQISSCE 348 (813)
Q Consensus 297 a~~~L~~L~~~~~~~~~i~~~-----gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~ 348 (813)
+..+|+.+-.+..|...+... .+..++.+|++++..+|-.|-.+.+-...++
T Consensus 232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 999999999877776666553 3688899999999999999999998887765
No 262
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=89.11 E-value=18 Score=40.26 Aligned_cols=164 Identities=15% Similarity=0.146 Sum_probs=113.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcH----HHHHHHHHHHHHhhcCchhH
Q 003530 151 LIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELS----REREEAVSLLYELSKSEALC 226 (813)
Q Consensus 151 ~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~----~~~~~a~~~L~~ls~~~~~~ 226 (813)
....+..++.+++...+..|+..|..++.+. ...+.+....++..|.++..+++. +....++.++..+-.+.-..
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~-~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDP-TFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccH-HHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 3556778888898888888999999998865 667777788889999999988764 34555666666665443222
Q ss_pred hHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCc-cHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhc
Q 003530 227 EKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCEN-NVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLA 305 (813)
Q Consensus 227 ~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~ 305 (813)
...+. ..+|...+.+.+.+-.+..+...|...|.++...+. -...+.+.--++.|+.+|+..+..++..|...|..|-
T Consensus 163 W~~~~-~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 163 WESVS-NDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred eeecc-cHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 11111 123333444443224566778888999988866555 4556777789999999999999999988887777775
Q ss_pred C--CchhHHHHHh
Q 003530 306 L--NSDVKVLVAR 316 (813)
Q Consensus 306 ~--~~~~~~~i~~ 316 (813)
. .++-+..+.+
T Consensus 242 ~~a~~~~R~~~~~ 254 (713)
T KOG2999|consen 242 RKAPDDKRFEMAK 254 (713)
T ss_pred hhCChHHHHHHHH
Confidence 5 2334444444
No 263
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=89.09 E-value=0.23 Score=50.04 Aligned_cols=43 Identities=35% Similarity=0.709 Sum_probs=34.5
Q ss_pred eecccccccCCC---ceecCCCchhcHHHHHHHHHHhhhCC-CCCCCCCCC
Q 003530 33 FVCPLTKQVMRD---PVTLENGQTFEREAIEKWFKECRENG-RKPVCPLTQ 79 (813)
Q Consensus 33 ~~Cpi~~~~m~d---pv~~~~g~t~~r~~i~~~~~~~~~~~-~~~~CP~t~ 79 (813)
|+||+.++.-.| ||++.|||..-+.++.+.-.. | .++-||.|-
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~n----G~~~FKCPYCP 383 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQN----GVLSFKCPYCP 383 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhc----CcEEeeCCCCC
Confidence 999999998744 899999999999987776654 4 236799883
No 264
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.96 E-value=11 Score=41.24 Aligned_cols=152 Identities=18% Similarity=0.090 Sum_probs=92.9
Q ss_pred ccCcHHHHHHHh----cCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHh-ccCcHHHHHHHHHHHHHhhcC
Q 003530 148 NSELIPMIIDML----KSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFL-SHELSREREEAVSLLYELSKS 222 (813)
Q Consensus 148 ~~g~i~~Lv~lL----~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~ls~~ 222 (813)
+.|....++..| .+++...+..|++.|.+.+..-++-.+.... -.+..++.-| ...+.+++.+++.+|..+...
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 456665555554 4567788999999999999885443333322 2344455444 455677888888888877654
Q ss_pred chhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCc--cHHHHHH--cCChHHHHHHHccCCHHHHHHHH
Q 003530 223 EALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCEN--NVRQMAE--NGRLQPLLTQILEGPQETKLSLA 298 (813)
Q Consensus 223 ~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~--~~~~i~~--~G~i~~Lv~lL~~~~~~~~~~a~ 298 (813)
..+...-..--..--.+..+.. +.+++.+..|..++..|+.... .+.-+.+ .+...+|+-.|.+.++.+-..+-
T Consensus 331 ~~~~~l~~~~l~ialrlR~l~~--se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr 408 (533)
T KOG2032|consen 331 ASNDDLESYLLNIALRLRTLFD--SEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACR 408 (533)
T ss_pred hhhcchhhhchhHHHHHHHHHH--hcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHH
Confidence 4333222111233445566676 8899999999988888865332 2333332 24556777778777776554443
Q ss_pred HHHH
Q 003530 299 AFLG 302 (813)
Q Consensus 299 ~~L~ 302 (813)
..+.
T Consensus 409 ~~~~ 412 (533)
T KOG2032|consen 409 SELR 412 (533)
T ss_pred HHHH
Confidence 3333
No 265
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.90 E-value=0.27 Score=50.24 Aligned_cols=47 Identities=11% Similarity=0.123 Sum_probs=39.3
Q ss_pred CCceecccccccCCCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCC
Q 003530 30 YDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKEL 82 (813)
Q Consensus 30 ~~~~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l 82 (813)
.++-+||||-----..|..||||.-|..||.+++-. ...|-.|+..+
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN------~k~CFfCktTv 466 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN------CKRCFFCKTTV 466 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhc------CCeeeEeccee
Confidence 467899999887788889999999999999999985 25677776544
No 266
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.81 E-value=5.4 Score=48.13 Aligned_cols=159 Identities=16% Similarity=0.208 Sum_probs=117.4
Q ss_pred HHHHHHHHhc----CCHHHHHHHHHHHHHhhC-CcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q 003530 319 GSCLINIMKS----GNMQAREAALKALNQISS-CEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNS 393 (813)
Q Consensus 319 i~~Lv~lL~~----~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~ 393 (813)
.|.+++..+. .++.++.+|.-||+.+.. +.+-... -.|.|+..|... +++.+|-+++-+|+-++-.
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeks----p~p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKS----PSPRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcC----CCceeeecchheccchhhh
Confidence 4777777743 578999999999999876 3333322 578899999853 4688999999888888765
Q ss_pred CCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChH
Q 003530 394 GHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQND 473 (813)
Q Consensus 394 ~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 473 (813)
-++. . +-..+.|.+-|.+.++.+|+.|..+|.+|-... .|.-.|-+..+...+.+++++
T Consensus 992 fpnl------------i-e~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd--------miKVKGql~eMA~cl~D~~~~ 1050 (1251)
T KOG0414|consen 992 FPNL------------I-EPWTEHLYRRLRDESPSVRKTALLVLSHLILND--------MIKVKGQLSEMALCLEDPNAE 1050 (1251)
T ss_pred cccc------------c-chhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh--------hhHhcccHHHHHHHhcCCcHH
Confidence 4432 2 345678888999999999999999999997653 233368899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCC
Q 003530 474 LRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENV 515 (813)
Q Consensus 474 v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~ 515 (813)
++.-|-..+.-|+... +.+. +.+|.++.-|.+.+
T Consensus 1051 IsdlAk~FF~Els~k~-n~iy-------nlLPdil~~Ls~~~ 1084 (1251)
T KOG0414|consen 1051 ISDLAKSFFKELSSKG-NTIY-------NLLPDILSRLSNGN 1084 (1251)
T ss_pred HHHHHHHHHHHhhhcc-cchh-------hhchHHHHhhccCc
Confidence 9999988888888432 3322 35555666665553
No 267
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=88.56 E-value=3.3 Score=48.52 Aligned_cols=211 Identities=15% Similarity=0.089 Sum_probs=122.9
Q ss_pred CHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCc--------------hhHhH
Q 003530 163 SRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSE--------------ALCEK 228 (813)
Q Consensus 163 ~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~--------------~~~~~ 228 (813)
+.+.+..|+..+..+.+.- -.|..-.....-..|+.+|++++ .-..++.++.-+..+. -.|++
T Consensus 787 s~dls~~al~~l~Wv~KaL-l~R~~~~s~~ia~klld~Ls~~~--~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQR 863 (1030)
T KOG1967|consen 787 SLDLSEIALTVLAWVTKAL-LLRNHPESSEIAEKLLDLLSGPS--TGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQR 863 (1030)
T ss_pred CcchhhHHHHHHHHHHHHH-HHcCCcccchHHHHHHHhcCCcc--ccchHHHhhHhhhccChHHhhhccccchhHHHHHH
Confidence 4455566666555443210 01111111223455666666632 2233444444333332 13455
Q ss_pred HhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHH-Hc-CChHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 003530 229 IGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMA-EN-GRLQPLLTQILEGPQETKLSLAAFLGDLAL 306 (813)
Q Consensus 229 i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~-~~-G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 306 (813)
++ ...+|.|++... ..+...+.+-..+|.++-.+-.- ..+. +- ..+|.|++-|.-.|..+|..+..+|.-+..
T Consensus 864 fF--~~ivP~l~~~~~--t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~ 938 (1030)
T KOG1967|consen 864 FF--CDIVPILVSKFE--TAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLT 938 (1030)
T ss_pred HH--HhhHHHHHHHhc--cCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHH
Confidence 54 367899999887 55566667777777776442221 2222 22 477888899998999999888888877654
Q ss_pred C-chhHHHHHhhhHHHHHHHHhcCC---HHHHHHHHHHHHHhhC-CcccHHHHHHcCChHHHHHHHhccCCCCCChhHHH
Q 003530 307 N-SDVKVLVARTVGSCLINIMKSGN---MQAREAALKALNQISS-CEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKE 381 (813)
Q Consensus 307 ~-~~~~~~i~~~gi~~Lv~lL~~~~---~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~ 381 (813)
. +.-...=...-+|.++.+=++.+ ..+++.|+.+|..|.. -|...-.-.+..++..|...|.+. ..-+|.
T Consensus 939 ~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-----KRlVR~ 1013 (1030)
T KOG1967|consen 939 ESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-----KRLVRK 1013 (1030)
T ss_pred hccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-----HHHHHH
Confidence 2 21111111222577766655543 5789999999999998 565554445555778888888764 366777
Q ss_pred HHHHH
Q 003530 382 VSATI 386 (813)
Q Consensus 382 ~a~~~ 386 (813)
.|..+
T Consensus 1014 eAv~t 1018 (1030)
T KOG1967|consen 1014 EAVDT 1018 (1030)
T ss_pred HHHHH
Confidence 77764
No 268
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=88.17 E-value=0.2 Score=39.11 Aligned_cols=48 Identities=23% Similarity=0.385 Sum_probs=34.3
Q ss_pred ceecccccccCCC-cee-cCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCC
Q 003530 32 AFVCPLTKQVMRD-PVT-LENGQTFEREAIEKWFKECRENGRKPVCPLTQKEL 82 (813)
Q Consensus 32 ~~~Cpi~~~~m~d-pv~-~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l 82 (813)
+-.||-|+-.=.| |.+ =-|.|.|-+.||.+|+.... +...||.|++..
T Consensus 31 dg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~t---sq~~CPmcRq~~ 80 (84)
T KOG1493|consen 31 DGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPT---SQGQCPMCRQTW 80 (84)
T ss_pred CCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCcc---ccccCCcchhee
Confidence 4567777655444 444 37889999999999998732 225699999864
No 269
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=88.08 E-value=41 Score=36.11 Aligned_cols=245 Identities=14% Similarity=0.106 Sum_probs=132.6
Q ss_pred CCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCc-----HHHHHHHHHHHHHhhc-CchhHhHHhhhhch
Q 003530 162 SSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHEL-----SREREEAVSLLYELSK-SEALCEKIGSINGA 235 (813)
Q Consensus 162 ~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~~ls~-~~~~~~~i~~~~g~ 235 (813)
.+..+...++.+|+|+..+++..+....+...+..+.+.+.... .+....=+.+|.-|+. ....|.++..+.+|
T Consensus 109 ~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~G 188 (532)
T KOG4464|consen 109 ADMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLG 188 (532)
T ss_pred cchHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 34578999999999999999888888888877777776664321 1223344455555543 44677777778899
Q ss_pred HHHHHHhcccC----C---C---CHHHHHH---HHHHHHhhccCCc-c-H----HHHHHc-CChHHHHHHHccC--CHHH
Q 003530 236 ILILVGMTSSK----S---E---NLLTVEK---AEKTLANLEKCEN-N-V----RQMAEN-GRLQPLLTQILEG--PQET 293 (813)
Q Consensus 236 i~~Lv~lL~~~----s---~---~~~~~~~---a~~~L~~L~~~~~-~-~----~~i~~~-G~i~~Lv~lL~~~--~~~~ 293 (813)
++.+.+.|..+ + . +++-... +..+++|+..+.. . + .+..-. +.....+-.+..+ ..++
T Consensus 189 l~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~~~~el 268 (532)
T KOG4464|consen 189 LELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRDSTEEL 268 (532)
T ss_pred cHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 99999999741 1 1 2233344 4455566643221 1 1 111111 1122222222111 1111
Q ss_pred HHHHHH--------HHHHhcCC--chhHHH-HH-hhh--HHHHHHHHhc---------CCHHHHHHHHHHHHHhhCCccc
Q 003530 294 KLSLAA--------FLGDLALN--SDVKVL-VA-RTV--GSCLINIMKS---------GNMQAREAALKALNQISSCEPS 350 (813)
Q Consensus 294 ~~~a~~--------~L~~L~~~--~~~~~~-i~-~~g--i~~Lv~lL~~---------~~~~~~~~a~~aL~~Ls~~~~~ 350 (813)
-..+.. .+..++.. .++... +. ..| ...+..+|.. ...+...-.+.+|..+|..+.+
T Consensus 269 hshav~~L~nv~~k~~~~~~~~~p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~~R~ 348 (532)
T KOG4464|consen 269 HSHAVNLLDNVPEKCLDVLAGAKPHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARSHRV 348 (532)
T ss_pred hhccCCccCCchhhhhhcccCCCCcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhhhHH
Confidence 111111 22222221 112111 11 123 3455555532 1224455667777777877766
Q ss_pred HHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHH
Q 003530 351 AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIE 430 (813)
Q Consensus 351 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~ 430 (813)
.....+..++|+|...-+.. ++- ..| =..+++++...+..++
T Consensus 349 ~Rkylr~qVLPPLrDV~~RP-------Evg----~tL---------------------------Rnkl~Rlmtl~~~~~K 390 (532)
T KOG4464|consen 349 MRKYLRQQVLPPLRDVSQRP-------EVG----QTL---------------------------RNKLVRLMTLPDSSVK 390 (532)
T ss_pred HHHHHHHhcCCchhhhhcCc-------chh----HHH---------------------------HHhhHhheeccchhhh
Confidence 66666667888887554432 111 111 1234566666667788
Q ss_pred HHHHHHHHHcccCC
Q 003530 431 CKLLQVLVGLTSSP 444 (813)
Q Consensus 431 ~~a~~~L~~L~~~~ 444 (813)
.-|+..|.-||+.+
T Consensus 391 ~vaAEfLFvLCKes 404 (532)
T KOG4464|consen 391 DVAAEFLFVLCKES 404 (532)
T ss_pred hhhHHHHHHHhhcc
Confidence 88899999888764
No 270
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.82 E-value=0.25 Score=51.35 Aligned_cols=44 Identities=14% Similarity=0.214 Sum_probs=33.7
Q ss_pred CCceecccccccCCCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCC
Q 003530 30 YDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKEL 82 (813)
Q Consensus 30 ~~~~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l 82 (813)
|....|-||.+-..|-+-+||||..| |+.-... -+.||+|++.+
T Consensus 303 ~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~-------l~~CPvCR~rI 346 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH-------LPQCPVCRQRI 346 (355)
T ss_pred CCCCceEEecCCccceeeecCCcEEE--chHHHhh-------CCCCchhHHHH
Confidence 34478999999999999999999987 5433322 36799998754
No 271
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.81 E-value=77 Score=38.92 Aligned_cols=224 Identities=14% Similarity=0.117 Sum_probs=123.4
Q ss_pred CCCHHHHHHHHHHHHhhccCCccHHHHHHc--CChHHHHHHHccCCHHHHHHHHHHHHHhcC--CchhHHHHHhhhHHHH
Q 003530 247 SENLLTVEKAEKTLANLEKCENNVRQMAEN--GRLQPLLTQILEGPQETKLSLAAFLGDLAL--NSDVKVLVARTVGSCL 322 (813)
Q Consensus 247 s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~--G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~--~~~~~~~i~~~gi~~L 322 (813)
+.+..+|..+-.+|..++..+.......+. -....|.+-+++-+...+.....+|..|-. +.+....+... |+.+
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~-I~Ev 743 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKL-IPEV 743 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHH-HHHH
Confidence 568899999999999998775443322221 123344444555555566666666666544 23444444443 4444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHHcC------ChHHHHHHHhccCCCCCChhHHHHHHH--HHHHHHhcC
Q 003530 323 INIMKSGNMQAREAALKALNQISSCEPSAKVLIHAG------ILPPLVKDLFTVGSNHLPMRLKEVSAT--ILANVVNSG 394 (813)
Q Consensus 323 v~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g------~i~~Lv~lL~~~~~~~~~~~~~~~a~~--~L~nL~~~~ 394 (813)
+=.++..+...++.+..+|..|+. .....+.| .|...+..+...-. ....+..+.. ++..+....
T Consensus 744 IL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~---gd~~~~~as~Ivai~~il~e~ 816 (1176)
T KOG1248|consen 744 ILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLV---GDSTRVVASDIVAITHILQEF 816 (1176)
T ss_pred HHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhc---ccHHHHHHHHHHHHHHHHHHH
Confidence 434477788899999999999983 11111111 34445555543210 1222323332 222332221
Q ss_pred CCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHH
Q 003530 395 HDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDL 474 (813)
Q Consensus 395 ~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 474 (813)
.+.-. ...-.+.+..+...|.+.++++...|+..+..++..-.. ..... .....++.+..++++..-.+
T Consensus 817 ~~~ld--------~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe--~~l~~-~~~~LL~sll~ls~d~k~~~ 885 (1176)
T KOG1248|consen 817 KNILD--------DETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPE--ECLSP-HLEELLPSLLALSHDHKIKV 885 (1176)
T ss_pred hcccc--------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCH--HHHhh-hHHHHHHHHHHHHHhhhHHH
Confidence 11100 111134555555677789999999999999888766221 11111 11123677777777777778
Q ss_pred HHHHHHHHHHhCCCC
Q 003530 475 RLASIELIQNLSPHM 489 (813)
Q Consensus 475 ~~~A~~~L~~Ls~~~ 489 (813)
+...-.+|-.|....
T Consensus 886 r~Kvr~LlekLirkf 900 (1176)
T KOG1248|consen 886 RKKVRLLLEKLIRKF 900 (1176)
T ss_pred HHHHHHHHHHHHHHh
Confidence 877777777666433
No 272
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=87.53 E-value=0.27 Score=39.03 Aligned_cols=51 Identities=18% Similarity=0.404 Sum_probs=24.3
Q ss_pred ceecccccccCC-C---ceec----CCCchhcHHHHHHHHHHhhhCC---C--CCCCCCCCcCC
Q 003530 32 AFVCPLTKQVMR-D---PVTL----ENGQTFEREAIEKWFKECRENG---R--KPVCPLTQKEL 82 (813)
Q Consensus 32 ~~~Cpi~~~~m~-d---pv~~----~~g~t~~r~~i~~~~~~~~~~~---~--~~~CP~t~~~l 82 (813)
+..|+||...+. + |+++ .||++|=..|+.+||..-.+.. . ...||.|+.++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i 65 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI 65 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence 467999998765 2 4442 5788999999999999633221 1 02599998765
No 273
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=87.34 E-value=23 Score=38.71 Aligned_cols=148 Identities=10% Similarity=0.137 Sum_probs=88.1
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHH-HHHHHHHhcCCC
Q 003530 319 GSCLINIMKS-GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSA-TILANVVNSGHD 396 (813)
Q Consensus 319 i~~Lv~lL~~-~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~-~~L~nL~~~~~~ 396 (813)
+-.+++.|++ .++..+..|++.|..++.+...+-.=--.-+|..+++.-.+ ..+.+...|. .++.-++.+.+
T Consensus 331 L~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~d-----s~~~v~~~Aeed~~~~las~~P- 404 (516)
T KOG2956|consen 331 LLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKD-----SQDEVMRVAEEDCLTTLASHLP- 404 (516)
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhC-----CchhHHHHHHHHHHHHHHhhCc-
Confidence 4567788876 67788999999999999875433210001133334433332 2234444444 34444555444
Q ss_pred CcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHH
Q 003530 397 FDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRL 476 (813)
Q Consensus 397 ~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 476 (813)
...|..+..++.+.+...--.++..+..++..=. .++....+ ....|.+++-..+.+..||.
T Consensus 405 ---------------~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~-~EeL~~ll--~diaP~~iqay~S~SS~VRK 466 (516)
T KOG2956|consen 405 ---------------LQCIVNISPLILTADEPRAVAVIKMLTKLFERLS-AEELLNLL--PDIAPCVIQAYDSTSSTVRK 466 (516)
T ss_pred ---------------hhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcC-HHHHHHhh--hhhhhHHHHHhcCchHHhhh
Confidence 2235566666666665555566667777766522 12333332 24577788888888999999
Q ss_pred HHHHHHHHhCCCCC
Q 003530 477 ASIELIQNLSPHMG 490 (813)
Q Consensus 477 ~A~~~L~~Ls~~~~ 490 (813)
.|+.+|..+-...+
T Consensus 467 taVfCLVamv~~vG 480 (516)
T KOG2956|consen 467 TAVFCLVAMVNRVG 480 (516)
T ss_pred hHHHhHHHHHHHHh
Confidence 99988887663333
No 274
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=87.31 E-value=8.4 Score=37.59 Aligned_cols=148 Identities=14% Similarity=0.148 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHhhcCCcccccccccCcHHHHHHHhc-----CCCHHHHHHHHHHHHHhhccC-cchhhhhhcCCCHHHHH
Q 003530 125 IMPALKYVQYFCQSSRSNKHVVHNSELIPMIIDMLK-----SSSRKVRCTALETLRIVVEED-DDNKEILGQGDTVRTIV 198 (813)
Q Consensus 125 ~~~al~~l~~l~~~~~~~r~~i~~~g~i~~Lv~lL~-----s~~~~~~~~al~~L~~L~~~~-~~~~~~i~~~g~i~~Lv 198 (813)
+..+|.-++-++. .|+.|..+.++..--.|-..|. +.-+-.|..++.+++.|...+ ++....+.....||..+
T Consensus 117 vcnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 117 VCNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 3456777776654 5666777777775444444442 223567889999999998765 34566777889999999
Q ss_pred HHhccCcHHHHHHHHHHHHHhhcCchhHhHHhh-------hhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHH
Q 003530 199 KFLSHELSREREEAVSLLYELSKSEALCEKIGS-------INGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVR 271 (813)
Q Consensus 199 ~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~-------~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~ 271 (813)
+++..++.-.+..|+-.+..+-.++..-+.|.. ....+..++.-+-. .....+.+.+..+-..||.++..+.
T Consensus 196 rIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs-~~~~RLlKh~iRcYlRLsd~p~aR~ 274 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVS-LGSTRLLKHAIRCYLRLSDKPHARA 274 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHheeecCCHhHHH
Confidence 999999988899999988888877765444422 22344444443321 5666778888888888887776665
Q ss_pred HHH
Q 003530 272 QMA 274 (813)
Q Consensus 272 ~i~ 274 (813)
.+.
T Consensus 275 lL~ 277 (315)
T COG5209 275 LLS 277 (315)
T ss_pred HHh
Confidence 443
No 275
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=87.01 E-value=15 Score=35.92 Aligned_cols=145 Identities=12% Similarity=0.082 Sum_probs=101.5
Q ss_pred HHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhccc---CCCCHHHHHHHHHHHHhhccCCcc--HHHHHHcCChHHHH
Q 003530 209 REEAVSLLYELSKSEALCEKIGSINGAILILVGMTSS---KSENLLTVEKAEKTLANLEKCENN--VRQMAENGRLQPLL 283 (813)
Q Consensus 209 ~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~---~s~~~~~~~~a~~~L~~L~~~~~~--~~~i~~~G~i~~Lv 283 (813)
..+|...|.-++.+++.+..+.. +..--.|-..|.. .+..+-++-.+.+++..|.++++. ...+....+||.++
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~-AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLD-AHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeee-cccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 57888888899999998887753 2221122333332 233455677788888888776543 34455678999999
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCchhHHHHHhh-----hH----HHHHH-HHhcCCHHHHHHHHHHHHHhhCCcccHHH
Q 003530 284 TQILEGPQETKLSLAAFLGDLALNSDVKVLVART-----VG----SCLIN-IMKSGNMQAREAALKALNQISSCEPSAKV 353 (813)
Q Consensus 284 ~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~-----gi----~~Lv~-lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~ 353 (813)
+.+..+++-.+.-++.++..+..++.+-+.+.+. ++ ..++. +.+.++..+...+.++-..||.++..|..
T Consensus 196 rIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~l 275 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARAL 275 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHH
Confidence 9999999999999999999998888765555442 22 33333 33557788888999998888888776655
Q ss_pred H
Q 003530 354 L 354 (813)
Q Consensus 354 i 354 (813)
+
T Consensus 276 L 276 (315)
T COG5209 276 L 276 (315)
T ss_pred H
Confidence 4
No 276
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=86.83 E-value=99 Score=39.13 Aligned_cols=144 Identities=15% Similarity=0.191 Sum_probs=92.8
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhh-cCchhHhH
Q 003530 150 ELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELS-KSEALCEK 228 (813)
Q Consensus 150 g~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls-~~~~~~~~ 228 (813)
+.+..++..|..+...+|.+|+++|..++.-++.. +.....-..+..-+.+....+|+.|+.++.... .+++.-.+
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH
Confidence 34666777888888999999999999998766432 111222233445566777889999999998543 34444444
Q ss_pred HhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 003530 229 IGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL 306 (813)
Q Consensus 229 i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 306 (813)
... .+..-.. +....+++++..+|+.+|....+-..+.+ ..-.++....+....++..+..++.++=.
T Consensus 893 yY~------~i~erIl--DtgvsVRKRvIKIlrdic~e~pdf~~i~~--~cakmlrRv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 893 YYD------QIIERIL--DTGVSVRKRVIKILRDICEETPDFSKIVD--MCAKMLRRVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred HHH------HHHhhcC--CCchhHHHHHHHHHHHHHHhCCChhhHHH--HHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence 321 2333333 56788999999999999876665555544 22233333333344478888888887744
No 277
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.44 E-value=39 Score=38.95 Aligned_cols=111 Identities=15% Similarity=0.105 Sum_probs=75.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHHhhhh
Q 003530 154 MIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIGSIN 233 (813)
Q Consensus 154 ~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~ 233 (813)
.+++-..+.+..+|...+..|..+.... ..+..-+-.+..+.+..-|.+..+.+|.+|+.+|..+-.++..- +.
T Consensus 89 hlLRg~Eskdk~VRfrvlqila~l~d~~-~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de-----e~ 162 (892)
T KOG2025|consen 89 HLLRGTESKDKKVRFRVLQILALLSDEN-AEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE-----EC 162 (892)
T ss_pred HHHhcccCcchhHHHHHHHHHHHHhccc-cccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC-----cc
Confidence 3444446778899999999998887633 22333444566777777788888999999999999997544221 22
Q ss_pred chHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHH
Q 003530 234 GAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMA 274 (813)
Q Consensus 234 g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~ 274 (813)
.+...++.++.+ +++++++..| |.|++.++.....|+
T Consensus 163 ~v~n~l~~liqn-DpS~EVRRaa---LsnI~vdnsTlp~Iv 199 (892)
T KOG2025|consen 163 PVVNLLKDLIQN-DPSDEVRRAA---LSNISVDNSTLPCIV 199 (892)
T ss_pred cHHHHHHHHHhc-CCcHHHHHHH---HHhhccCcccchhHH
Confidence 455677888876 7888998865 455555544444333
No 278
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=86.35 E-value=1.8 Score=42.89 Aligned_cols=83 Identities=22% Similarity=0.194 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhhcCchhHhHHhhhh------chHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccH-HHHH-HcCC
Q 003530 207 REREEAVSLLYELSKSEALCEKIGSIN------GAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNV-RQMA-ENGR 278 (813)
Q Consensus 207 ~~~~~a~~~L~~ls~~~~~~~~i~~~~------g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~-~~i~-~~G~ 278 (813)
.-|+.|+++|++|+..+.|.+.|..++ ..+..|+++|.. .+++..++-|+.+|.+|+..++.. ..++ +.+.
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~-~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGM-REDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 458999999999999988887775432 356677777774 688899999999999998876653 3444 6699
Q ss_pred hHHHHHHHccCC
Q 003530 279 LQPLLTQILEGP 290 (813)
Q Consensus 279 i~~Lv~lL~~~~ 290 (813)
|..|+..+.+..
T Consensus 218 i~~Li~FiE~a~ 229 (257)
T PF12031_consen 218 ISHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 279
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=85.68 E-value=26 Score=41.92 Aligned_cols=185 Identities=17% Similarity=0.176 Sum_probs=113.6
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCC-ccHHHHHH
Q 003530 197 IVKFLSHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCE-NNVRQMAE 275 (813)
Q Consensus 197 Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~-~~~~~i~~ 275 (813)
+-.-+.+.+-..|.+|+..++....... .+..-...|-+..+++... .+.|..+...|+.+|..++..- ...... .
T Consensus 258 l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~-kDaN~~v~~~aa~~l~~ia~~lr~~~~~~-~ 334 (815)
T KOG1820|consen 258 LETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRL-KDANINVVMLAAQILELIAKKLRPLFRKY-A 334 (815)
T ss_pred HHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhc-cCcchhHHHHHHHHHHHHHHhcchhhHHH-H
Confidence 3344456777788899988887766555 2222112234444444443 2677888888888888886432 222222 2
Q ss_pred cCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHH
Q 003530 276 NGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLI 355 (813)
Q Consensus 276 ~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~ 355 (813)
.+.++.+++.+.+.-..++..+..++...+... -...-++.+..+++.+++..+..+...+...-..-+. ...
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~-----~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~--~~~ 407 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILNST-----PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP--KTV 407 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc-----cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC--cCc
Confidence 368899999999888888887777776654311 0011147777889999999998888777665542211 112
Q ss_pred HcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHh
Q 003530 356 HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVN 392 (813)
Q Consensus 356 ~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~ 392 (813)
..+.+..++..+-.+. +|...+++..|..++.-+..
T Consensus 408 ~~~t~~~l~p~~~~~~-~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHI-NDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred chhhHHHHhHHHhhhc-cCCcHHHHHHHHHHHHHHHH
Confidence 2233444444333221 24568999999998887755
No 280
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=85.65 E-value=0.2 Score=51.88 Aligned_cols=67 Identities=21% Similarity=0.339 Sum_probs=50.4
Q ss_pred CCCCCCCCchhhhhcccCCCCCceecccccccC--CCcee--cCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCc
Q 003530 10 DSGSQSDGSYHFERLHIEPIYDAFVCPLTKQVM--RDPVT--LENGQTFEREAIEKWFKECRENGRKPVCPLTQK 80 (813)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~Cpi~~~~m--~dpv~--~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~ 80 (813)
+.|.++++++.+-+.+....--++.|-.|++.+ +|--+ +||.|.|--+|..+++.. ++. .+||.|+.
T Consensus 343 s~gl~d~~~~h~~ra~~~~~e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~---n~~-rsCP~Crk 413 (518)
T KOG1941|consen 343 SKGLQDELRAHVVRAHECVEETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILEN---NGT-RSCPNCRK 413 (518)
T ss_pred hccchhHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHh---CCC-CCCccHHH
Confidence 456677777777554444444569999999987 44433 899999999999999976 564 89999973
No 281
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=85.44 E-value=7.3 Score=44.19 Aligned_cols=121 Identities=17% Similarity=0.206 Sum_probs=79.6
Q ss_pred cCCHHHHHHHHHHHHHhcCC-chhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCC-cccHHHHHHcCChHHHHH
Q 003530 288 EGPQETKLSLAAFLGDLALN-SDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSC-EPSAKVLIHAGILPPLVK 365 (813)
Q Consensus 288 ~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Lv~ 365 (813)
.++...+..++..|...... ++ +.+.++..+++|..+.+..++..|.+.|..+|.. ++....+ +..|+.
T Consensus 33 kg~~k~K~Laaq~I~kffk~FP~----l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~Q 103 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHFPD----LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQ 103 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-GG----GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhChh----hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHH
Confidence 35777888888888887663 32 2344578899999999999999999999999995 5666664 566888
Q ss_pred HHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhc---CCChHHHHHHHHHHH
Q 003530 366 DLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS---NTGPTIECKLLQVLV 438 (813)
Q Consensus 366 lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~---~~~~~~~~~a~~~L~ 438 (813)
+|.+.. ..-...+-.+|..|...+ ..+.+..+...+. ++++.+|+.++..|.
T Consensus 104 lL~tdd-----~~E~~~v~~sL~~ll~~d----------------~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 104 LLQTDD-----PVELDAVKNSLMSLLKQD----------------PKGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HTT--------HHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHhccc-----HHHHHHHHHHHHHHHhcC----------------cHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 998642 344445555665555432 2566777777665 678889999988774
No 282
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=85.08 E-value=0.52 Score=34.72 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=32.9
Q ss_pred ceecccccccCCCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCC
Q 003530 32 AFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRST 85 (813)
Q Consensus 32 ~~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~ 85 (813)
+..|=.++..=...+++||||..++.|---+ .- .-||+|+.++...
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~-------rY-ngCPfC~~~~~~~ 52 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGE-------RY-NGCPFCGTPFEFD 52 (55)
T ss_pred ceeEEEccccccccccccccceeeccccChh-------hc-cCCCCCCCcccCC
Confidence 3566667777677889999999999873222 11 4699999887543
No 283
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=84.92 E-value=2.9 Score=33.37 Aligned_cols=60 Identities=18% Similarity=0.274 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhhhcCcchhhHHHHHHhhcCcHHHHHHHhhcCChHHHHHHHHHHHHHHcchhhh
Q 003530 701 VEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIA 764 (813)
Q Consensus 701 ~~~A~~AL~~L~~~~~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~~a~~aL~~i~~~~~~~ 764 (813)
..+|+.|++++...+. +...+.+.+.|+.++++.++++...+|-.|.++|.-|.+..+..
T Consensus 4 lKaaLWaighIgss~~----G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~ 63 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPL----GIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGA 63 (73)
T ss_pred HHHHHHHHHhHhcChH----HHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHH
Confidence 4679999999987543 77788888999999999976777899999999999998765443
No 284
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.33 E-value=0.51 Score=52.25 Aligned_cols=34 Identities=18% Similarity=0.459 Sum_probs=29.5
Q ss_pred CceecccccccC----CCceecCCCchhcHHHHHHHHH
Q 003530 31 DAFVCPLTKQVM----RDPVTLENGQTFEREAIEKWFK 64 (813)
Q Consensus 31 ~~~~Cpi~~~~m----~dpv~~~~g~t~~r~~i~~~~~ 64 (813)
+-++||||...| ..||.+.||||.|+.|.+.-.+
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn 47 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN 47 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh
Confidence 347899997777 7899999999999999988774
No 285
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=84.29 E-value=11 Score=43.30 Aligned_cols=70 Identities=17% Similarity=-0.010 Sum_probs=34.4
Q ss_pred CCHHHHHHH-hccCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccH
Q 003530 192 DTVRTIVKF-LSHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNV 270 (813)
Q Consensus 192 g~i~~Lv~l-L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~ 270 (813)
++|..|++. .++.+.++|+.|+-+|.-+.. +.+..+|..|.+|.. +-|+-++.-++.+|.-.|....++
T Consensus 554 kair~lLh~aVsD~nDDVrRaAVialGFVl~---------~dp~~~~s~V~lLse-s~N~HVRyGaA~ALGIaCAGtG~~ 623 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLF---------RDPEQLPSTVSLLSE-SYNPHVRYGAAMALGIACAGTGLK 623 (929)
T ss_pred hhHHHhhcccccccchHHHHHHHHHheeeEe---------cChhhchHHHHHHhh-hcChhhhhhHHHHHhhhhcCCCcH
Confidence 344445444 445555555555555544322 123334444555543 455556655555555555444444
Q ss_pred H
Q 003530 271 R 271 (813)
Q Consensus 271 ~ 271 (813)
.
T Consensus 624 e 624 (929)
T KOG2062|consen 624 E 624 (929)
T ss_pred H
Confidence 4
No 286
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.14 E-value=1.1e+02 Score=37.06 Aligned_cols=136 Identities=13% Similarity=0.073 Sum_probs=83.5
Q ss_pred HHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcc------cCCCCHHHHHHHHHHHHhhcc---CCccHHHHHHcCChHH
Q 003530 211 EAVSLLYELSKSEALCEKIGSINGAILILVGMTS------SKSENLLTVEKAEKTLANLEK---CENNVRQMAENGRLQP 281 (813)
Q Consensus 211 ~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~------~~s~~~~~~~~a~~~L~~L~~---~~~~~~~i~~~G~i~~ 281 (813)
+|...|..+++ ...++.+ +|.++.+++.|. ....++.-.+-|..++.+|+. .+.--....+.=.+..
T Consensus 391 Aa~~~l~~~~~-KR~ke~l---~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~h 466 (1010)
T KOG1991|consen 391 AALDFLTTLVS-KRGKETL---PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNH 466 (1010)
T ss_pred HHHHHHHHHHH-hcchhhh---hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHH
Confidence 34444444433 2333333 578888888887 234566777888888888752 1111222333334555
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcC-CchhHHHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHhhCCcccH
Q 003530 282 LLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVGSCLINIMK-SGNMQAREAALKALNQISSCEPSA 351 (813)
Q Consensus 282 Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~gi~~Lv~lL~-~~~~~~~~~a~~aL~~Ls~~~~~~ 351 (813)
+.-.++++.--+|..|+++++.++. +-....... .+.......|. +....++-.|+-||..+-.+.+..
T Consensus 467 VfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~-~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~ 537 (1010)
T KOG1991|consen 467 VFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLS-EALELTHNCLLNDNELPVRVEAALALQSFISNQEQA 537 (1010)
T ss_pred hhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHH-HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhh
Confidence 5666677788899999999999984 222222222 22344455555 667788999999999988765444
No 287
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=84.02 E-value=0.71 Score=46.45 Aligned_cols=45 Identities=27% Similarity=0.466 Sum_probs=34.1
Q ss_pred ecccccc-cCCCce----ecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCC
Q 003530 34 VCPLTKQ-VMRDPV----TLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELR 83 (813)
Q Consensus 34 ~Cpi~~~-~m~dpv----~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~ 83 (813)
.||+|+- .+.+|= +=+|||+.|-+|+-.-|.- |. ..||.|+..+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~----g~-~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSL----GP-AQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhc----CC-CCCCcccchhh
Confidence 4888863 344551 1399999999999999986 64 88999987654
No 288
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=83.99 E-value=4 Score=40.46 Aligned_cols=80 Identities=23% Similarity=0.229 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhhccCcchhhhhhcCCCHHH-------HHHHhc-cCcHHHHHHHHHHHHHhhcCch-hHhHHhhhhc
Q 003530 164 RKVRCTALETLRIVVEEDDDNKEILGQGDTVRT-------IVKFLS-HELSREREEAVSLLYELSKSEA-LCEKIGSING 234 (813)
Q Consensus 164 ~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~-------Lv~lL~-~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g 234 (813)
..-|..|+.+|++|+..+ .|-..+...+-... |+++|. .++...|+-|+.+|.+|+..++ ..+.++...+
T Consensus 138 lSPqrlaLEaLcKLsV~e-~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIE-NNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CCHHHHHHHHHHHhheec-cCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 456889999999999865 78888887765443 333443 5677789999999999997664 5567888889
Q ss_pred hHHHHHHhcc
Q 003530 235 AILILVGMTS 244 (813)
Q Consensus 235 ~i~~Lv~lL~ 244 (813)
+|..|+.++.
T Consensus 217 ~i~~Li~FiE 226 (257)
T PF12031_consen 217 CISHLIAFIE 226 (257)
T ss_pred hHHHHHHHHH
Confidence 9999999997
No 289
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=83.98 E-value=54 Score=33.78 Aligned_cols=222 Identities=19% Similarity=0.153 Sum_probs=119.9
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHc
Q 003530 197 IVKFLSHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAEN 276 (813)
Q Consensus 197 Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~ 276 (813)
|=..|.+++...|..|+..|..+-..-.. ..+ ...-+..|+..+...-+|......++..|..|..........+ .
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~-~~L--~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~-~ 79 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPP-DFL--SRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESA-V 79 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCH-hhc--cHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhH-H
Confidence 44567888899999998888876432211 011 1123445555544323455555555666666643222111110 0
Q ss_pred CChHHHHHHHc--cCCHHHHHHHHHHHHHhcCCchhHHHHHhhh---HHHHHHHHhc-CCHHHHHHHHHHHHHhhCCccc
Q 003530 277 GRLQPLLTQIL--EGPQETKLSLAAFLGDLALNSDVKVLVARTV---GSCLINIMKS-GNMQAREAALKALNQISSCEPS 350 (813)
Q Consensus 277 G~i~~Lv~lL~--~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g---i~~Lv~lL~~-~~~~~~~~a~~aL~~Ls~~~~~ 350 (813)
..+..+.+... +-....|...-..|..|..+ ....+...| +..+++.+.. .+|+..-.+...+..+...-+.
T Consensus 80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 11122222111 22455676777777777543 223333322 5677776653 5777777777777766653221
Q ss_pred HHHHHHcCChHHHHHHHhc-------cCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhc
Q 003530 351 AKVLIHAGILPPLVKDLFT-------VGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS 423 (813)
Q Consensus 351 ~~~i~~~g~i~~Lv~lL~~-------~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~ 423 (813)
....+.+.+.+.. ...+++..-.++.-...|.+.-...+ ...+.++|.|++-|.
T Consensus 158 ------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~-------------~fa~~~~p~LleKL~ 218 (262)
T PF14500_consen 158 ------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP-------------LFAPFAFPLLLEKLD 218 (262)
T ss_pred ------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH-------------hhHHHHHHHHHHHHc
Confidence 1122333333322 22223323345555556655544332 234678999999999
Q ss_pred CCChHHHHHHHHHHHHcccC
Q 003530 424 NTGPTIECKLLQVLVGLTSS 443 (813)
Q Consensus 424 ~~~~~~~~~a~~~L~~L~~~ 443 (813)
++.+.+|..++.+|..++..
T Consensus 219 s~~~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 219 STSPSVKLDSLQTLKACIEN 238 (262)
T ss_pred CCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999877654
No 290
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=83.86 E-value=0.79 Score=47.70 Aligned_cols=51 Identities=33% Similarity=0.553 Sum_probs=44.1
Q ss_pred eecccccccCCCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCcc
Q 003530 33 FVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNP 89 (813)
Q Consensus 33 ~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~~l~p 89 (813)
..|.+++..|.|||-+..|-.|+-..|..|+.. + .+=|++++++...+|++
T Consensus 41 ~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-----~-g~nP~tG~kl~~~dLIk 91 (518)
T KOG0883|consen 41 NHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-----H-GTNPITGQKLDGKDLIK 91 (518)
T ss_pred hhceeccccccCcccccCCcEEeeehhhHHHHH-----c-CCCCCCCCcccccccee
Confidence 689999999999999999999999999999996 2 45688888887777654
No 291
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.62 E-value=0.29 Score=35.46 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=33.7
Q ss_pred eecccccccCCCceecCCCch-hcHHHHHHHHHHhhhCCCCCCCCCCCcCC
Q 003530 33 FVCPLTKQVMRDPVTLENGQT-FEREAIEKWFKECRENGRKPVCPLTQKEL 82 (813)
Q Consensus 33 ~~Cpi~~~~m~dpv~~~~g~t-~~r~~i~~~~~~~~~~~~~~~CP~t~~~l 82 (813)
-.|.||.+--.|.|+-.|||- .|-.|=.+-+.. ++ ..||.|+.++
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~----~~-g~CPiCRapi 53 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKA----LH-GCCPICRAPI 53 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHc----cC-CcCcchhhHH
Confidence 469999999999999999996 455554444443 44 7899998764
No 292
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=83.36 E-value=38 Score=40.58 Aligned_cols=171 Identities=12% Similarity=0.100 Sum_probs=112.0
Q ss_pred ccHHHHHHHHHHHhhcCCcccccccccCcHHHHHHHh-cCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHh
Q 003530 123 SDIMPALKYVQYFCQSSRSNKHVVHNSELIPMIIDML-KSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFL 201 (813)
Q Consensus 123 ~~~~~al~~l~~l~~~~~~~r~~i~~~g~i~~Lv~lL-~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL 201 (813)
.+..+|+..+...+.+.. -.......|.+..+++.. .+.+..+...|+..|..++......-.. ...+..|.++.-+
T Consensus 268 K~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~-~~~~v~p~lld~l 345 (815)
T KOG1820|consen 268 KDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK-YAKNVFPSLLDRL 345 (815)
T ss_pred HHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH-HHHhhcchHHHHh
Confidence 466788888877776554 122223344444454443 4567888888999999888755332111 1235678888888
Q ss_pred ccCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhc-cCC-ccHHHHHHcCCh
Q 003530 202 SHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLE-KCE-NNVRQMAENGRL 279 (813)
Q Consensus 202 ~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~-~~~-~~~~~i~~~G~i 279 (813)
.......+..+..++-..... ......++.+...++ +.+|.++......+.... ..+ .+...-.-.+.+
T Consensus 346 kekk~~l~d~l~~~~d~~~ns-------~~l~~~~~~I~e~lk--~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~ 416 (815)
T KOG1820|consen 346 KEKKSELRDALLKALDAILNS-------TPLSKMSEAILEALK--GKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLV 416 (815)
T ss_pred hhccHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHhc--CCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHh
Confidence 888888887777777665541 112245667777888 789998888666665442 222 222222233688
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHh
Q 003530 280 QPLLTQILEGPQETKLSLAAFLGDL 304 (813)
Q Consensus 280 ~~Lv~lL~~~~~~~~~~a~~~L~~L 304 (813)
+.++.+..+.+.++|..+..++..+
T Consensus 417 p~~~~~~~D~~~~VR~Aa~e~~~~v 441 (815)
T KOG1820|consen 417 PHLIKHINDTDKDVRKAALEAVAAV 441 (815)
T ss_pred HHHhhhccCCcHHHHHHHHHHHHHH
Confidence 8889999899999999998887775
No 293
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.34 E-value=0.84 Score=47.52 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=36.6
Q ss_pred eecccccccCCCceecCCCch-hcHHHHHHHHHHhhhCCCCCCCCCCCcCCC
Q 003530 33 FVCPLTKQVMRDPVTLENGQT-FEREAIEKWFKECRENGRKPVCPLTQKELR 83 (813)
Q Consensus 33 ~~Cpi~~~~m~dpv~~~~g~t-~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~ 83 (813)
-.|=||+.--+|-+++||-|. .|..|-+.---. + ..||+||+++.
T Consensus 291 keCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q-----~-n~CPICRqpi~ 336 (349)
T KOG4265|consen 291 KECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ-----T-NNCPICRQPIE 336 (349)
T ss_pred CeeEEEecCCcceEEecchhhehhHhHHHHHHHh-----h-cCCCccccchH
Confidence 679999999999999999998 788886555432 2 67999999764
No 294
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=83.12 E-value=1.6 Score=38.57 Aligned_cols=51 Identities=24% Similarity=0.479 Sum_probs=41.7
Q ss_pred ceecccccccCCCceec----CCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCC
Q 003530 32 AFVCPLTKQVMRDPVTL----ENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRST 85 (813)
Q Consensus 32 ~~~Cpi~~~~m~dpv~~----~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~ 85 (813)
-+.|-||++.-.|+--+ .||++.|-.|-..-|+.+ +-+ +.||+|+-++.+.
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~--~~y-pvCPvCkTSFKss 134 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFC--NLY-PVCPVCKTSFKSS 134 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHc--ccC-CCCCccccccccc
Confidence 48899999999888664 579999999999988874 345 8999998877543
No 295
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=82.45 E-value=22 Score=36.84 Aligned_cols=159 Identities=21% Similarity=0.182 Sum_probs=95.7
Q ss_pred HHHhccCcHHHHHHHHHHHHHhhcCchhHhHHhhhhch-HHHHHHhcccC--CCCHHHHHHHHHHHHhhccCCccHHHHH
Q 003530 198 VKFLSHELSREREEAVSLLYELSKSEALCEKIGSINGA-ILILVGMTSSK--SENLLTVEKAEKTLANLEKCENNVRQMA 274 (813)
Q Consensus 198 v~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~-i~~Lv~lL~~~--s~~~~~~~~a~~~L~~L~~~~~~~~~i~ 274 (813)
.+++.+-..+.+--++.+++-+..++.....+....++ ...+..++... +..+..+--+++++.|+-.++..+..+.
T Consensus 69 ~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~ 148 (268)
T PF08324_consen 69 LKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLL 148 (268)
T ss_dssp HHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHH
Confidence 33333333333445566666666666665555433333 34444444321 3567788889999999998888888777
Q ss_pred Hc-C-ChHHHHHHHccC----CHHHHHHHHHHHHHhcCCc-hhH--HHHHhhhHHHHHHHHhc--CCHHHHHHHHHHHHH
Q 003530 275 EN-G-RLQPLLTQILEG----PQETKLSLAAFLGDLALNS-DVK--VLVARTVGSCLINIMKS--GNMQAREAALKALNQ 343 (813)
Q Consensus 275 ~~-G-~i~~Lv~lL~~~----~~~~~~~a~~~L~~L~~~~-~~~--~~i~~~gi~~Lv~lL~~--~~~~~~~~a~~aL~~ 343 (813)
+. + .+...+..+... +..++..++..+.|++..- ..+ ....-.-+..+++.+.. .+++....++-||++
T Consensus 149 ~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGt 228 (268)
T PF08324_consen 149 SHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGT 228 (268)
T ss_dssp CTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH
Confidence 54 3 455555544444 6788999999999997521 111 00000013444553322 588999999999999
Q ss_pred hhCCcccHHHHHH
Q 003530 344 ISSCEPSAKVLIH 356 (813)
Q Consensus 344 Ls~~~~~~~~i~~ 356 (813)
|...+.......+
T Consensus 229 L~~~~~~~~~~~~ 241 (268)
T PF08324_consen 229 LLSSSDSAKQLAK 241 (268)
T ss_dssp HHCCSHHHHHHCC
T ss_pred HhccChhHHHHHH
Confidence 9987665555554
No 296
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=82.45 E-value=0.61 Score=54.34 Aligned_cols=46 Identities=20% Similarity=0.398 Sum_probs=38.4
Q ss_pred eecccccccCCCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCC
Q 003530 33 FVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELR 83 (813)
Q Consensus 33 ~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~ 83 (813)
+.|++|.+ ..+|+++.|||.||+.|+...+.. ... ..||.|+..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~---~~~-~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQ---SEN-APCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhcccc---ccC-CCCcHHHHHHH
Confidence 89999999 888999999999999999999875 222 46999976543
No 297
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=82.10 E-value=2.8 Score=40.69 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=57.6
Q ss_pred cccccCcHHHHHHHhc---------CCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHH
Q 003530 145 VVHNSELIPMIIDMLK---------SSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSL 215 (813)
Q Consensus 145 ~i~~~g~i~~Lv~lL~---------s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~ 215 (813)
.+.+.||+..|+.+|. ..+......++.+|+.+..........+...+++..|+..|.+.+..++..++.+
T Consensus 102 ~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~lei 181 (187)
T PF06371_consen 102 EFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEI 181 (187)
T ss_dssp HH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHH
T ss_pred HhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3456789999999882 1456788899999999887653334445558899999999999999999999999
Q ss_pred HHHhh
Q 003530 216 LYELS 220 (813)
Q Consensus 216 L~~ls 220 (813)
|..++
T Consensus 182 L~~lc 186 (187)
T PF06371_consen 182 LAALC 186 (187)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 298
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=81.58 E-value=1.3 Score=36.96 Aligned_cols=27 Identities=37% Similarity=0.810 Sum_probs=23.7
Q ss_pred CCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcC
Q 003530 49 ENGQTFEREAIEKWFKECRENGRKPVCPLTQKE 81 (813)
Q Consensus 49 ~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~ 81 (813)
.|+|.|--.||.+|++. +..||.+.+.
T Consensus 80 ~CNHaFH~hCisrWlkt------r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT------RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh------cCcCCCcCcc
Confidence 68999999999999997 5889999653
No 299
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=81.07 E-value=1.2 Score=31.97 Aligned_cols=43 Identities=21% Similarity=0.324 Sum_probs=20.1
Q ss_pred cccccccC--CCcee--cCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCC
Q 003530 35 CPLTKQVM--RDPVT--LENGQTFEREAIEKWFKECRENGRKPVCPLTQKEL 82 (813)
Q Consensus 35 Cpi~~~~m--~dpv~--~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l 82 (813)
||+|.+.| +|--. -+||+-+||.|..+-.+. +. ..||-|++++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~----~~-g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILEN----EG-GRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTS----S--SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhc----cC-CCCCCCCCCC
Confidence 78888888 33222 367999999886666542 33 6899999865
No 300
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=79.76 E-value=45 Score=39.31 Aligned_cols=181 Identities=15% Similarity=0.142 Sum_probs=95.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhCCc-ccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCC
Q 003530 319 GSCLINIMKSGNMQAREAALKALNQISSCE-PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDF 397 (813)
Q Consensus 319 i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~ 397 (813)
+..+.+++.++... ...+...|..|.... .--.. .+..+..+++.... ...+.++..|.-.+..+.......
T Consensus 397 v~~i~~~I~~~~~~-~~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~-~~~~~l~~ta~L~~~~lv~~~c~~ 469 (618)
T PF01347_consen 397 VKFIKDLIKSKKLT-DDEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKV-KNSPYLRETALLSLGSLVHKYCVN 469 (618)
T ss_dssp HHHHHHHHHTT-S--HHHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHH-HT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCC-HHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccc-cCChhHHHHHHHHHHHHhCceeec
Confidence 56666777653222 233555666655432 22222 23445555543210 013566777776666665421111
Q ss_pred c--ccccCCCCccccchhhHHHHHHhhc----CCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCC-
Q 003530 398 D--SITVGPDNQTLVSEDIVHNLLHLIS----NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP- 470 (813)
Q Consensus 398 ~--~~~~~~~~~~l~~~~~v~~Lv~lL~----~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~- 470 (813)
. .-..+... ....+..++.|...|. ..+..-+..++.+|.|+... ..++.|..++...
T Consensus 470 ~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~--------------~~i~~l~~~i~~~~ 534 (618)
T PF01347_consen 470 SDSAEFCDPCS-RCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP--------------ESIPVLLPYIEGKE 534 (618)
T ss_dssp ------------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G--------------GGHHHHHTTSTTSS
T ss_pred ccccccccccc-hhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc--------------hhhHHHHhHhhhcc
Confidence 0 00000000 1223455666666665 34566777888888888532 2367778888777
Q ss_pred --ChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcC
Q 003530 471 --QNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAEL 531 (813)
Q Consensus 471 --~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L 531 (813)
...+|..|+++|..+....+.. ..+.|.++..+.....++|.+|..+|-..
T Consensus 535 ~~~~~~R~~Ai~Alr~~~~~~~~~----------v~~~l~~I~~n~~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 535 EVPHFIRVAAIQALRRLAKHCPEK----------VREILLPIFMNTTEDPEVRIAAYLILMRC 587 (618)
T ss_dssp -S-HHHHHHHHHTTTTGGGT-HHH----------HHHHHHHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHhhcCcHH----------HHHHHHHHhcCCCCChhHHHHHHHHHHhc
Confidence 4588999999999776443333 34567777777665468999988777554
No 301
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=78.56 E-value=1.1e+02 Score=33.69 Aligned_cols=172 Identities=16% Similarity=0.102 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHHHHhhccC-cchhhhhhcCCCHHHHHHHhcc-CcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHH
Q 003530 163 SRKVRCTALETLRIVVEED-DDNKEILGQGDTVRTIVKFLSH-ELSREREEAVSLLYELSKSEALCEKIGSINGAILILV 240 (813)
Q Consensus 163 ~~~~~~~al~~L~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv 240 (813)
..+-+..|+.-|-.+..++ ...++.-. ...+..++..|++ .+...+..|.++|..+..+...+-.=. ..-+|..++
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~Ds-tE~ai~K~L 377 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDS-TEIAICKVL 377 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhch-HHHHHHHHH
Confidence 4566777887666554433 22222211 1235667888887 677779999999999988765443322 223555566
Q ss_pred HhcccCCCCHHHHHHHHH-HHHhhccCCccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc--hhHHHHHhh
Q 003530 241 GMTSSKSENLLTVEKAEK-TLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNS--DVKVLVART 317 (813)
Q Consensus 241 ~lL~~~s~~~~~~~~a~~-~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~--~~~~~i~~~ 317 (813)
..-. +.+.++...|.. ++.-++.....+. |..+..++...+...-..+...+..+...= +--..+...
T Consensus 378 eaa~--ds~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~d 448 (516)
T KOG2956|consen 378 EAAK--DSQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPD 448 (516)
T ss_pred HHHh--CCchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhh
Confidence 6655 444444444444 3444554433222 122223333344444444444555554321 111122222
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 003530 318 VGSCLINIMKSGNMQAREAALKALNQIS 345 (813)
Q Consensus 318 gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls 345 (813)
-.|.+++-..+.+..++..|+-+|..+-
T Consensus 449 iaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 449 IAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred hhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 3588888888888899999999887754
No 302
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.46 E-value=65 Score=38.15 Aligned_cols=179 Identities=12% Similarity=0.131 Sum_probs=106.5
Q ss_pred HHhccCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCC
Q 003530 199 KFLSHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGR 278 (813)
Q Consensus 199 ~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~ 278 (813)
..+.++-..+|..++..|..+......+..+. ..+.+......|+ ++|+-+--+|+..+..||.- .....
T Consensus 734 ~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~-~ekvl~i~ld~Lk--dedsyvyLnaI~gv~~Lcev-------y~e~i 803 (982)
T KOG4653|consen 734 SSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQ-GEKVLAIALDTLK--DEDSYVYLNAIRGVVSLCEV-------YPEDI 803 (982)
T ss_pred HHhcCCcccchHHHHHHHHHHHHhcchhhhhh-HHHHHHHHHHHhc--ccCceeeHHHHHHHHHHHHh-------cchhh
Confidence 33445556678899999999988766666665 4589999999999 77877777777766565432 23345
Q ss_pred hHHHHH-HHccC---CHHHHHHHHHHHHHhcCC-chhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCC-c-ccH
Q 003530 279 LQPLLT-QILEG---PQETKLSLAAFLGDLALN-SDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSC-E-PSA 351 (813)
Q Consensus 279 i~~Lv~-lL~~~---~~~~~~~a~~~L~~L~~~-~~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~-~-~~~ 351 (813)
+|-|.+ +.... ..+.+...-.++.++... .+-...-.+--+...+...++++...+..++..|++||.- . ...
T Consensus 804 l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vs 883 (982)
T KOG4653|consen 804 LPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVS 883 (982)
T ss_pred HHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhh
Confidence 566665 34332 123333344555554431 1100000000134455556666666789999999999872 2 222
Q ss_pred HHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q 003530 352 KVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNS 393 (813)
Q Consensus 352 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~ 393 (813)
..+.+ .+..++.+.+. +.+..+|+.|+.++..+-.+
T Consensus 884 d~~~e--v~~~Il~l~~~----d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 884 DFFHE--VLQLILSLETT----DGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred HHHHH--HHHHHHHHHcc----CCchhhHHHHHHHHHHHHhc
Confidence 22222 34555566655 34678889999888877553
No 303
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=78.18 E-value=1.7 Score=44.30 Aligned_cols=46 Identities=17% Similarity=0.248 Sum_probs=31.6
Q ss_pred ecccccccC--CCcee--cCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCC
Q 003530 34 VCPLTKQVM--RDPVT--LENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRS 84 (813)
Q Consensus 34 ~Cpi~~~~m--~dpv~--~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~ 84 (813)
.||+|.+.| .|--. .+||+..||-|...--.. -. ..||.|+..+.+
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~----ln-grcpacrr~y~d 65 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN----LN-GRCPACRRKYDD 65 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhh----cc-CCChHhhhhccc
Confidence 499999999 34322 688999999885433322 22 569999876654
No 304
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=77.35 E-value=60 Score=38.28 Aligned_cols=197 Identities=17% Similarity=0.133 Sum_probs=105.8
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHHHhcCCc--hhHHHHHhhhHHHHHHHHhc----CCHHHHHHHHHHHHHhhC----C
Q 003530 278 RLQPLLTQILEGPQETKLSLAAFLGDLALNS--DVKVLVARTVGSCLINIMKS----GNMQAREAALKALNQISS----C 347 (813)
Q Consensus 278 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~--~~~~~i~~~gi~~Lv~lL~~----~~~~~~~~a~~aL~~Ls~----~ 347 (813)
.+..+.+++.++...-. .++..|..|.... ..... +..+..|+.+ .++.++..|+-+++.|.. .
T Consensus 396 av~~i~~~I~~~~~~~~-ea~~~l~~l~~~~~~Pt~e~-----l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~ 469 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDD-EAAQLLASLPFHVRRPTEEL-----LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN 469 (618)
T ss_dssp HHHHHHHHHHTT-S-HH-HHHHHHHHHHHT-----HHH-----HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCHH-HHHHHHHHHHhhcCCCCHHH-----HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence 56666777776533222 2444455543311 12221 3444455543 456677778877777754 2
Q ss_pred c------ccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHh
Q 003530 348 E------PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHL 421 (813)
Q Consensus 348 ~------~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~l 421 (813)
. ......+....++.|...+.... ...+..-+..++.+|.|+.. ...++.|..+
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~LkaLgN~g~-------------------~~~i~~l~~~ 529 (618)
T PF01347_consen 470 SDSAEFCDPCSRCIIEKYVPYLEQELKEAV-SRGDEEEKIVYLKALGNLGH-------------------PESIPVLLPY 529 (618)
T ss_dssp -----------SS--GGGTHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHT--------------------GGGHHHHHTT
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHh-hccCHHHHHHHHHHhhccCC-------------------chhhHHHHhH
Confidence 1 01122222346777777776211 01245777888899999743 3468888888
Q ss_pred hcCC---ChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCC--hHHHHHHHHHHHHhCCCCCHHHHHH
Q 003530 422 ISNT---GPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQ--NDLRLASIELIQNLSPHMGHELADA 496 (813)
Q Consensus 422 L~~~---~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~v~~~A~~~L~~Ls~~~~~~~~~~ 496 (813)
+... +..+|..|+.+|..++.... ..+ .+.|+++..+.. .++|..|..+|.... +..
T Consensus 530 i~~~~~~~~~~R~~Ai~Alr~~~~~~~--~~v---------~~~l~~I~~n~~e~~EvRiaA~~~lm~~~---P~~---- 591 (618)
T PF01347_consen 530 IEGKEEVPHFIRVAAIQALRRLAKHCP--EKV---------REILLPIFMNTTEDPEVRIAAYLILMRCN---PSP---- 591 (618)
T ss_dssp STTSS-S-HHHHHHHHHTTTTGGGT-H--HHH---------HHHHHHHHH-TTS-HHHHHHHHHHHHHT------H----
T ss_pred hhhccccchHHHHHHHHHHHHHhhcCc--HHH---------HHHHHHHhcCCCCChhHHHHHHHHHHhcC---CCH----
Confidence 8765 67888899999988865532 122 456677777654 478888876665421 111
Q ss_pred HhcccccHHHHHHhhhcCCCChHHHHHH
Q 003530 497 LRGAVGQLGSLIRVISENVGISKEQAAA 524 (813)
Q Consensus 497 l~~~~g~i~~Lv~ll~~~~~~~~~~~~a 524 (813)
..+..++..+..+.+ .++....
T Consensus 592 -----~~l~~i~~~l~~E~~-~QV~sfv 613 (618)
T PF01347_consen 592 -----SVLQRIAQSLWNEPS-NQVASFV 613 (618)
T ss_dssp -----HHHHHHHHHHTT-S--HHHHHHH
T ss_pred -----HHHHHHHHHHhhCch-HHHHHHH
Confidence 355667777766654 3544443
No 305
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=77.27 E-value=7.1 Score=45.91 Aligned_cols=152 Identities=12% Similarity=0.094 Sum_probs=101.1
Q ss_pred cCchHHHHHHHhcCCchHHHHHHHHHHhhhccccccccCCCCCCCCCCCcccccccccCCCCCCCCcccccccCccccch
Q 003530 600 HNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFC 679 (813)
Q Consensus 600 ~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~ls~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (813)
..++|.|++...+. .-..|..=-.+|.++-.+.+.-...+ -
T Consensus 866 ~~ivP~l~~~~~t~-~~~~K~~yl~~LshVl~~vP~~vllp-------------~------------------------- 906 (1030)
T KOG1967|consen 866 CDIVPILVSKFETA-PGSQKHNYLEALSHVLTNVPKQVLLP-------------Q------------------------- 906 (1030)
T ss_pred HhhHHHHHHHhccC-CccchhHHHHHHHHHHhcCCHHhhcc-------------c-------------------------
Confidence 46788888888754 55566666666666654433211100 0
Q ss_pred hhhccchHHHHHhhccCchhHHHHHHHHHHhhhhcCcchhhHHHHHHhhcCcHHHHHHHhhcCC---hHHHHHHHHHHHH
Q 003530 680 LLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRT---ENLQRRAVWVVER 756 (813)
Q Consensus 680 l~~~gai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~~~~~v~~L~~ll~~~~~---~~~~~~a~~aL~~ 756 (813)
-..-.|.|++.|.-+|..||..+...+..+....... ..-.-..-||.++.+=+ +.+ -.+|+.|...|+.
T Consensus 907 --~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL----~t~~~~Tlvp~lLsls~-~~~n~~~~VR~~ALqcL~a 979 (1030)
T KOG1967|consen 907 --FPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL----QTEHLSTLVPYLLSLSS-DNDNNMMVVREDALQCLNA 979 (1030)
T ss_pred --hhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc----chHHHhHHHHHHHhcCC-CCCcchhHHHHHHHHHHHH
Confidence 1335788999999999999999999999988765532 22223344566665543 333 4679999999999
Q ss_pred HHcchhhhhhhcCCCcchHHHHHHhhhcCchhHHHHHHHHH
Q 003530 757 ILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALK 797 (813)
Q Consensus 757 i~~~~~~~~~~~~~~~~~~~Lv~~l~~~~~~~~~~Aa~~L~ 797 (813)
+.+.--+..-+.--..+++.|+..|.+.-+-+|+.|.++=.
T Consensus 980 L~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 980 LTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred HhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 98742222222223456789999999999999999988643
No 306
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=77.23 E-value=1.2e+02 Score=35.49 Aligned_cols=211 Identities=17% Similarity=0.157 Sum_probs=110.0
Q ss_pred CHHHHHHHhccCcHHHHHHHHHHHHHhhcCch----hHhHH--hhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccC
Q 003530 193 TVRTIVKFLSHELSREREEAVSLLYELSKSEA----LCEKI--GSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKC 266 (813)
Q Consensus 193 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~----~~~~i--~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~ 266 (813)
.+-.|+++|+.-+.+.......-+.. .. .. ..+.+ +.+..++..+...+....-.......+...+......
T Consensus 312 ~f~~lv~~lR~~~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~ 389 (574)
T smart00638 312 KFLRLVRLLRTLSEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARY 389 (574)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhc
Confidence 45567777776655543333333322 10 11 11222 2345688888888873211211112222222221111
Q ss_pred CccHHHHHHcCChHHHHHHHccC----CHHHHHHHHHHHHHhcC----CchhH-HHHHhhhHHHHHHHHh----cCCHHH
Q 003530 267 ENNVRQMAENGRLQPLLTQILEG----PQETKLSLAAFLGDLAL----NSDVK-VLVARTVGSCLINIMK----SGNMQA 333 (813)
Q Consensus 267 ~~~~~~i~~~G~i~~Lv~lL~~~----~~~~~~~a~~~L~~L~~----~~~~~-~~i~~~gi~~Lv~lL~----~~~~~~ 333 (813)
+ +. ..+..+..++.++ ...++..+.-+++.+.. +.+.+ ..+.+.-++.|.+.|. .++..-
T Consensus 390 P-t~------~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 462 (574)
T smart00638 390 P-TE------EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEE 462 (574)
T ss_pred C-CH------HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchh
Confidence 1 11 1334555566543 44566666666665542 22221 2333334566666554 345556
Q ss_pred HHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchh
Q 003530 334 REAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSED 413 (813)
Q Consensus 334 ~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~ 413 (813)
+...+++|+|+... ..++.+..++... ...+..++..|+.+|..++...+ ..
T Consensus 463 ~~~~LkaLGN~g~~----------~~i~~l~~~l~~~--~~~~~~iR~~Av~Alr~~a~~~p----------------~~ 514 (574)
T smart00638 463 IQLYLKALGNAGHP----------SSIKVLEPYLEGA--EPLSTFIRLAAILALRNLAKRDP----------------RK 514 (574)
T ss_pred eeeHHHhhhccCCh----------hHHHHHHHhcCCC--CCCCHHHHHHHHHHHHHHHHhCc----------------hH
Confidence 77888899887652 1445555555521 13457899999999998876433 23
Q ss_pred hHHHHHHhhcC--CChHHHHHHHHHHHHc
Q 003530 414 IVHNLLHLISN--TGPTIECKLLQVLVGL 440 (813)
Q Consensus 414 ~v~~Lv~lL~~--~~~~~~~~a~~~L~~L 440 (813)
+-+.|+.++.+ .++++|..|..+|...
T Consensus 515 v~~~l~~i~~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 515 VQEVLLPIYLNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 45666777664 4677887776666433
No 307
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.88 E-value=33 Score=40.43 Aligned_cols=181 Identities=15% Similarity=0.178 Sum_probs=114.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCccccc
Q 003530 323 INIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITV 402 (813)
Q Consensus 323 v~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~ 402 (813)
+..+.++-..++..++..|..+....+....+...+++...+..|++. +.-+--+|...+..||.-
T Consensus 733 i~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkde-----dsyvyLnaI~gv~~Lcev--------- 798 (982)
T KOG4653|consen 733 ISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDE-----DSYVYLNAIRGVVSLCEV--------- 798 (982)
T ss_pred HHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhccc-----CceeeHHHHHHHHHHHHh---------
Confidence 344455666788999999999988766667777888999999999875 356667777777677652
Q ss_pred CCCCccccchhhHHHHHHhhcCC----ChHHHHHHHHHHHHcccCC-CchHHHHHHHHhcCCHHHHHHhhhCCChHHHHH
Q 003530 403 GPDNQTLVSEDIVHNLLHLISNT----GPTIECKLLQVLVGLTSSP-TTVLSVVSAIKSSGATISLVQFVEAPQNDLRLA 477 (813)
Q Consensus 403 ~~~~~~l~~~~~v~~Lv~lL~~~----~~~~~~~a~~~L~~L~~~~-~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 477 (813)
..+.++|-|.+.-.+. .++.+-..-.++.++...- +-....+.. .+..++...++++.+.|..
T Consensus 799 -------y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~-----Li~tfl~gvrepd~~~RaS 866 (982)
T KOG4653|consen 799 -------YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAV-----LINTFLSGVREPDHEFRAS 866 (982)
T ss_pred -------cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHH-----HHHHHHHhcCCchHHHHHh
Confidence 3356677777743321 1233334445555554331 111122222 2566777788787788999
Q ss_pred HHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCC
Q 003530 478 SIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPE 533 (813)
Q Consensus 478 A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~ 533 (813)
++..++.|+.-......+.+. .....++.+...++. .-+|.+|+.++..+-.
T Consensus 867 S~a~lg~Lcq~~a~~vsd~~~---ev~~~Il~l~~~d~s-~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 867 SLANLGQLCQLLAFQVSDFFH---EVLQLILSLETTDGS-VLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHHHHHHHHHHhhhhhHHHH---HHHHHHHHHHccCCc-hhhHHHHHHHHHHHHh
Confidence 988888877322211222333 245556666666654 5888899888877655
No 308
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=76.59 E-value=54 Score=35.12 Aligned_cols=109 Identities=17% Similarity=0.142 Sum_probs=79.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhc-cCcchhhhhhc-CC-CHHHHHHHhccCc-------------HHHHHHHHHH
Q 003530 152 IPMIIDMLKSSSRKVRCTALETLRIVVE-EDDDNKEILGQ-GD-TVRTIVKFLSHEL-------------SREREEAVSL 215 (813)
Q Consensus 152 i~~Lv~lL~s~~~~~~~~al~~L~~L~~-~~~~~~~~i~~-~g-~i~~Lv~lL~~~~-------------~~~~~~a~~~ 215 (813)
...+.+.|++........+++.|..++. ++....+.+.. -+ ..+.+.+++.... +++|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 5667777888888888899999999987 55344444433 22 3456666663211 2788888888
Q ss_pred HHHhhc--CchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHh
Q 003530 216 LYELSK--SEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLAN 262 (813)
Q Consensus 216 L~~ls~--~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~ 262 (813)
+..+-. ++..+..+....+.+..+.+-+. .+++++......+|..
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~--~D~~~~v~~iL~~l~~ 184 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLR--KDPPETVILILETLKD 184 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhccc--CCCHHHHHHHHHHHHH
Confidence 877754 55778888877888999999998 6888888888888875
No 309
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=76.52 E-value=12 Score=29.85 Aligned_cols=65 Identities=20% Similarity=0.166 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCCchhHHHHHhhh-HHHHHHHHh-cCCHHHHHHHHHHHHHhhCCcccHHHHHHcC
Q 003530 294 KLSLAAFLGDLALNSDVKVLVARTV-GSCLINIMK-SGNMQAREAALKALNQISSCEPSAKVLIHAG 358 (813)
Q Consensus 294 ~~~a~~~L~~L~~~~~~~~~i~~~g-i~~Lv~lL~-~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g 358 (813)
.+.+.+++++++..+..-..+.+.. ++.++++.. ++...+|--|..+|.-++...+..+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 3568899999999888888888765 799999886 4677899999999999999988887776655
No 310
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=76.37 E-value=1.3e+02 Score=34.67 Aligned_cols=164 Identities=21% Similarity=0.101 Sum_probs=93.8
Q ss_pred hcCCCHHHHHHHHHHHHHhhccCcchhhhhh---cCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHHhhhhch
Q 003530 159 LKSSSRKVRCTALETLRIVVEEDDDNKEILG---QGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIGSINGA 235 (813)
Q Consensus 159 L~s~~~~~~~~al~~L~~L~~~~~~~~~~i~---~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~ 235 (813)
+-.-..+.+.-|+.+|+.+..+...+-..+- ....+..++..+. .++..+.-++++|.|+-.++..++-+......
T Consensus 553 l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~ 631 (745)
T KOG0301|consen 553 LLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLES 631 (745)
T ss_pred HhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 3344567777788888888776544333332 2234555666655 56777889999999999998777776543222
Q ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHhhcc--CCccHHHHHHcCChHHHHHHHccC-----CHHHHHHHHHHHHHhcCCc
Q 003530 236 ILILVGMTSSKSENLLTVEKAEKTLANLEK--CENNVRQMAENGRLQPLLTQILEG-----PQETKLSLAAFLGDLALNS 308 (813)
Q Consensus 236 i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~--~~~~~~~i~~~G~i~~Lv~lL~~~-----~~~~~~~a~~~L~~L~~~~ 308 (813)
+...+.-.+. ..+..++...+....|++. ..++-. .|+.+.+...+... +-+.....+-+|++|+..+
T Consensus 632 i~~~~~~~~s-~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~ 706 (745)
T KOG0301|consen 632 ILDPVIEASS-LSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD 706 (745)
T ss_pred Hhhhhhhhhc-ccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc
Confidence 2222222221 2334555544444445532 111111 35555555444432 2344556777888888877
Q ss_pred hhHHHHHhh-hHHHHHHHHhc
Q 003530 309 DVKVLVART-VGSCLINIMKS 328 (813)
Q Consensus 309 ~~~~~i~~~-gi~~Lv~lL~~ 328 (813)
.....++.. .+..+++-+++
T Consensus 707 ~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 707 ASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred HHHHHHHHhcCHHHHHHHHHH
Confidence 666666664 46777776654
No 311
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.22 E-value=1.2 Score=46.52 Aligned_cols=48 Identities=29% Similarity=0.544 Sum_probs=40.8
Q ss_pred eecccccccCCC---ceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCC
Q 003530 33 FVCPLTKQVMRD---PVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRST 85 (813)
Q Consensus 33 ~~Cpi~~~~m~d---pv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~ 85 (813)
+.|.|+++.|.| |++.|.||+|-..+|++|-.. +| -+||.++..+..+
T Consensus 331 Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~---~~--i~dP~~~k~f~~~ 381 (389)
T KOG0396|consen 331 LVCSISGELMDDDNPPHLFPNGYVYGTKALESLNED---DG--IGDPRTKKVFRYS 381 (389)
T ss_pred HHhhccccccCCCCCcccccCceeehhHHHHhhccc---CC--CcCCCCCccccHH
Confidence 889999999954 899999999999999999875 23 6899999877543
No 312
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=75.47 E-value=34 Score=32.46 Aligned_cols=108 Identities=19% Similarity=0.118 Sum_probs=64.5
Q ss_pred CHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHHhh-hhchHHHHHHhcccCCCCHHHHHHHHHHHHhhc----cCC
Q 003530 193 TVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIGS-INGAILILVGMTSSKSENLLTVEKAEKTLANLE----KCE 267 (813)
Q Consensus 193 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~-~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~----~~~ 267 (813)
.+..+..+|++++...|-.++.++.-....... +.+.. -.--+..|+.+|+. .+.+.+.+.++.+|..+. ..+
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~-e~l~~~~~~W~~~Ll~~L~~-~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW-EILLSHGSQWLRALLSILEK-PDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 455677888998888888887777776654322 22322 12358889999985 566778888888887773 234
Q ss_pred ccHHHHHHc---CChHHHHHHHccCCHHHHHHHHHHHHHh
Q 003530 268 NNVRQMAEN---GRLQPLLTQILEGPQETKLSLAAFLGDL 304 (813)
Q Consensus 268 ~~~~~i~~~---G~i~~Lv~lL~~~~~~~~~~a~~~L~~L 304 (813)
+..+++.-- +.++.+++++.+ ......+..+|..+
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~l 141 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATL 141 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHH
Confidence 444444321 344444444443 23344444444444
No 313
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=75.44 E-value=1.4 Score=32.95 Aligned_cols=39 Identities=21% Similarity=0.546 Sum_probs=21.8
Q ss_pred CceecccccccCCCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCc
Q 003530 31 DAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQK 80 (813)
Q Consensus 31 ~~~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~ 80 (813)
+.|.||.|++-+.. ..+.+.+.+++..+ +....||+|..
T Consensus 1 ~~f~CP~C~~~~~~-------~~L~~H~~~~H~~~----~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGFSE-------SSLVEHCEDEHRSE----SKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCccCH-------HHHHHHHHhHCcCC----CCCccCCCchh
Confidence 36999999883221 12333443443332 22378999964
No 314
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=75.39 E-value=1.3 Score=51.42 Aligned_cols=47 Identities=26% Similarity=0.552 Sum_probs=34.8
Q ss_pred ceecccccccCC--Cc---e--ecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCC
Q 003530 32 AFVCPLTKQVMR--DP---V--TLENGQTFEREAIEKWFKECRENGRKPVCPLTQKEL 82 (813)
Q Consensus 32 ~~~Cpi~~~~m~--dp---v--~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l 82 (813)
.--|+||--++. |- - --.|.|.|--+|+-+||.. ++. .+||.||..+
T Consensus 1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~S---s~~-s~CPlCRsei 1522 (1525)
T COG5219 1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFAS---SAR-SNCPLCRSEI 1522 (1525)
T ss_pred cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHh---cCC-CCCCcccccc
Confidence 356999988874 32 1 1246688989999999997 454 8999998654
No 315
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=75.09 E-value=1.3e+02 Score=32.60 Aligned_cols=85 Identities=14% Similarity=-0.080 Sum_probs=50.5
Q ss_pred cHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhccc---CCCCHHHHHHHHHHHHhhc-cCCccHHH-HHHcCCh
Q 003530 205 LSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSS---KSENLLTVEKAEKTLANLE-KCENNVRQ-MAENGRL 279 (813)
Q Consensus 205 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~---~s~~~~~~~~a~~~L~~L~-~~~~~~~~-i~~~G~i 279 (813)
+.++..++..+|+|+..+....+...-.......+...+.. .+-.-+++..=...|+-|. .....+.+ +++.+|+
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 34678899999999987776555544344444444444431 0111223334445555553 34455554 5688999
Q ss_pred HHHHHHHccC
Q 003530 280 QPLLTQILEG 289 (813)
Q Consensus 280 ~~Lv~lL~~~ 289 (813)
+.+-++|.+.
T Consensus 190 ~~lt~~led~ 199 (532)
T KOG4464|consen 190 ELLTNWLEDK 199 (532)
T ss_pred HHHHHHhhcc
Confidence 9999999764
No 316
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=74.77 E-value=1.4e+02 Score=32.75 Aligned_cols=96 Identities=19% Similarity=0.168 Sum_probs=72.6
Q ss_pred chHHHHHHhcccC-CCCHHHHHHHHHHHHhhccCC-ccHHHHHHcCChHHHHHHHc-cC---CHHHHHHHHHHHHHhcCC
Q 003530 234 GAILILVGMTSSK-SENLLTVEKAEKTLANLEKCE-NNVRQMAENGRLQPLLTQIL-EG---PQETKLSLAAFLGDLALN 307 (813)
Q Consensus 234 g~i~~Lv~lL~~~-s~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~G~i~~Lv~lL~-~~---~~~~~~~a~~~L~~L~~~ 307 (813)
..+..|..++.+. .=-+.+-..|+.++..+-.++ .....+.++|.++.+++.+. .+ +.++....-.+|..||.+
T Consensus 106 ~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN 185 (379)
T PF06025_consen 106 SLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN 185 (379)
T ss_pred hHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC
Confidence 3455555566531 112567788888888886554 45677889999999999998 54 667888888999999999
Q ss_pred chhHHHHHhhh-HHHHHHHHhcC
Q 003530 308 SDVKVLVARTV-GSCLINIMKSG 329 (813)
Q Consensus 308 ~~~~~~i~~~g-i~~Lv~lL~~~ 329 (813)
+++.+.+.+.. ++.+++++.++
T Consensus 186 ~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 186 NRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred HHHHHHHHhcChHHHHHHHhCCH
Confidence 99998888876 78999988653
No 317
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=74.73 E-value=1.3e+02 Score=32.34 Aligned_cols=157 Identities=14% Similarity=0.120 Sum_probs=107.5
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhhc-Cc-hhHhHHhhhhc-hHHHHHHhcccC---CCC--------HHHHHHHHHH
Q 003530 194 VRTIVKFLSHELSREREEAVSLLYELSK-SE-ALCEKIGSING-AILILVGMTSSK---SEN--------LLTVEKAEKT 259 (813)
Q Consensus 194 i~~Lv~lL~~~~~~~~~~a~~~L~~ls~-~~-~~~~~i~~~~g-~i~~Lv~lL~~~---s~~--------~~~~~~a~~~ 259 (813)
+..+.+.|++........++.+|..+.. +. ...+.+...-. ..+.|.+++... ..+ ++++...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7778899999888888899999999988 43 44444433222 456666666421 011 2788888888
Q ss_pred HHhhcc--CCccHHHHH-HcCChHHHHHHHccCCHHHHHHHHHHHHHhcC-Cch----hHHHHHhh-hHHHHHHHHhcCC
Q 003530 260 LANLEK--CENNVRQMA-ENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSD----VKVLVART-VGSCLINIMKSGN 330 (813)
Q Consensus 260 L~~L~~--~~~~~~~i~-~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~----~~~~i~~~-gi~~Lv~lL~~~~ 330 (813)
+..+.. ++..+..+. +.+.+..+.+.|..++.++......+|..-.. ++. .|..+... .+..|+.+.....
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 776643 444566665 45789999999999999999999998886443 332 34334333 3677888776655
Q ss_pred H----HHHHHHHHHHHHhhCCccc
Q 003530 331 M----QAREAALKALNQISSCEPS 350 (813)
Q Consensus 331 ~----~~~~~a~~aL~~Ls~~~~~ 350 (813)
+ .+.+.+-..|..+|.++.+
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCc
Confidence 5 7788888888888876643
No 318
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=74.70 E-value=21 Score=33.91 Aligned_cols=118 Identities=18% Similarity=0.278 Sum_probs=79.7
Q ss_pred chHHHHHhhccCchhHHHHHHHHHHhhhhcCcchhhHHHHHHhhcCc--HHHHHHHhhcCChHHHHHHHHHHHHHHcc--
Q 003530 685 AVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGI--KPILDVLLEKRTENLQRRAVWVVERILRT-- 760 (813)
Q Consensus 685 ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~~~~~v--~~L~~ll~~~~~~~~~~~a~~aL~~i~~~-- 760 (813)
-+..+.++|.+.++.-|-.++..+..+..+. +.+.+.++++. ..|+.+|+...+..+.+.|..+|..|+..
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~-----~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQC-----SWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4556888999999999999998888887653 13455454443 45888886556678889999999999944
Q ss_pred --hhhhhhhcCCCcch---HHHHHHhhhcCchhHHHHHHHHHHhcccCCCCCCCCCC
Q 003530 761 --DDIAYEVSGDPNVS---TALVDAFQHADYRTRQIAERALKHIDKIPNFSGIFPNM 812 (813)
Q Consensus 761 --~~~~~~~~~~~~~~---~~Lv~~l~~~~~~~~~~Aa~~L~~l~~~~~~s~~~~~~ 812 (813)
++..+++. ...++ ..++++++. ......+..+|..+- +.+...||+.
T Consensus 101 ~~p~l~Rei~-tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll--~~~ptt~rp~ 152 (165)
T PF08167_consen 101 GKPTLTREIA-TPNLPKFIQSLLQLLQD--SSCPETALDALATLL--PHHPTTFRPF 152 (165)
T ss_pred CCCchHHHHh-hccHHHHHHHHHHHHhc--cccHHHHHHHHHHHH--HHCCccccch
Confidence 56555553 23343 444444444 466677777777665 4666666653
No 319
>PF04641 Rtf2: Rtf2 RING-finger
Probab=74.62 E-value=2.3 Score=43.87 Aligned_cols=33 Identities=27% Similarity=0.601 Sum_probs=30.6
Q ss_pred eecccccccCCCceec-CCCchhcHHHHHHHHHH
Q 003530 33 FVCPLTKQVMRDPVTL-ENGQTFEREAIEKWFKE 65 (813)
Q Consensus 33 ~~Cpi~~~~m~dpv~~-~~g~t~~r~~i~~~~~~ 65 (813)
+.|+||++.+.+||+. .-|+-|.+..|.+|+-.
T Consensus 35 ~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~ 68 (260)
T PF04641_consen 35 THCALSQQPLEDPIVSDRLGRLYNKEAILEFLLD 68 (260)
T ss_pred CcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHh
Confidence 8999999999999974 57999999999999986
No 320
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=74.38 E-value=42 Score=31.66 Aligned_cols=146 Identities=15% Similarity=0.177 Sum_probs=76.9
Q ss_pred hhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhH
Q 003530 232 INGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVK 311 (813)
Q Consensus 232 ~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~ 311 (813)
-+..++.|.++|++ ..+..++..+.++|..|..-|..+.+....+ .+.-. -...+..... ..+.+....+..-
T Consensus 8 yP~LL~~L~~iLk~-e~s~~iR~E~lr~lGilGALDP~~~k~~~~~-~~~~~--~~~~~~~~~~---~~l~~~~~~~~~e 80 (160)
T PF11865_consen 8 YPELLDILLNILKT-EQSQSIRREALRVLGILGALDPYKHKSIQKS-LDSKS--SENSNDESTD---ISLPMMGISPSSE 80 (160)
T ss_pred hHHHHHHHHHHHHh-CCCHHHHHHHHHHhhhccccCcHHHhccccc-CCccc--cccccccchh---hHHhhccCCCchH
Confidence 35677889999986 4678999999999988854444333322110 00000 0000011111 1111111111222
Q ss_pred HHHHhhhHHHHHHHHhcCCHH-HHHHHHHHHHHhhCCc--ccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHH
Q 003530 312 VLVARTVGSCLINIMKSGNMQ-AREAALKALNQISSCE--PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILA 388 (813)
Q Consensus 312 ~~i~~~gi~~Lv~lL~~~~~~-~~~~a~~aL~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~ 388 (813)
+....-.+..|+++|++++-. -...++.++.++.... .+. ... .-++|.++..++.. +...++....-|+
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv-~~L-~~viP~~l~~i~~~-----~~~~~e~~~~qL~ 153 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCV-PYL-PQVIPIFLRVIRTC-----PDSLREFYFQQLA 153 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCch-hHH-HHHhHHHHHHHHhC-----CHHHHHHHHHHHH
Confidence 222222468889999876543 3456778877776432 332 222 23788899999854 3466666555555
Q ss_pred HHH
Q 003530 389 NVV 391 (813)
Q Consensus 389 nL~ 391 (813)
.|.
T Consensus 154 ~lv 156 (160)
T PF11865_consen 154 DLV 156 (160)
T ss_pred HHH
Confidence 443
No 321
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=73.77 E-value=19 Score=30.38 Aligned_cols=72 Identities=15% Similarity=0.195 Sum_probs=54.6
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHcccCCC-chHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHH
Q 003530 415 VHNLLHLISNTGPTIECKLLQVLVGLTSSPT-TVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHE 492 (813)
Q Consensus 415 v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~ 492 (813)
....+..|.++.+.+|.+++..|..|..... .... . .+.+..+...|+++++-+-.+|.+.|..|+...+..
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~-~-----~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVID-I-----PKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhh-H-----HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH
Confidence 4455667778888899999999999988765 2212 1 234778889999999999999999999998544443
No 322
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=72.78 E-value=1.2 Score=53.84 Aligned_cols=48 Identities=19% Similarity=0.383 Sum_probs=40.7
Q ss_pred CCCCCceecccccccCC-CceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCc
Q 003530 27 EPIYDAFVCPLTKQVMR-DPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQK 80 (813)
Q Consensus 27 ~~~~~~~~Cpi~~~~m~-dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~ 80 (813)
......+.|+||+++|+ --.+.-|||.||..|++-|... ...||.|+.
T Consensus 1148 ~~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~------~s~~~~~ks 1196 (1394)
T KOG0298|consen 1148 MNLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA------SSRCPICKS 1196 (1394)
T ss_pred HHhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH------hccCcchhh
Confidence 34456689999999999 5567899999999999999997 478999974
No 323
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.76 E-value=3.1 Score=43.90 Aligned_cols=63 Identities=22% Similarity=0.385 Sum_probs=45.0
Q ss_pred eecccccccC------CCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCC--CC---CCCcccHhhHHHHHHH
Q 003530 33 FVCPLTKQVM------RDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKEL--RS---TDLNPSIALRNTIEEW 100 (813)
Q Consensus 33 ~~Cpi~~~~m------~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l--~~---~~l~pn~~l~~~I~~~ 100 (813)
+.|=||.+.+ +-|-++.||||+|..|+..-+.. +. -.||+|+++. .. ..+..|..+-..|+..
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~----~~-i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGN----SR-ILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcC----ce-eeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 3466666655 44777889999999998888764 43 6799999873 22 2467777777777665
No 324
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=72.36 E-value=49 Score=37.05 Aligned_cols=126 Identities=21% Similarity=0.088 Sum_probs=59.4
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHh-cccCCCCHHHHHHHHHHHHhhccCCccHHHHHH
Q 003530 197 IVKFLSHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGM-TSSKSENLLTVEKAEKTLANLEKCENNVRQMAE 275 (813)
Q Consensus 197 Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~l-L~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~ 275 (813)
+-++|.+.++-.|.+.+-.+..--.. . ...|++..|+.. .+ +.|.++++.|+.+|.-.|..+.+
T Consensus 521 I~ell~d~ds~lRy~G~fs~alAy~G-T------gn~~vv~~lLh~avs--D~nDDVrRAAViAlGfvc~~D~~------ 585 (926)
T COG5116 521 INELLYDKDSILRYNGVFSLALAYVG-T------GNLGVVSTLLHYAVS--DGNDDVRRAAVIALGFVCCDDRD------ 585 (926)
T ss_pred HHHHhcCchHHhhhccHHHHHHHHhc-C------CcchhHhhhheeecc--cCchHHHHHHHHheeeeEecCcc------
Confidence 44555555555555554443322110 0 123445555555 33 56666777777776666544322
Q ss_pred cCChHHHHHHHccC-CHHHHHHHHHHHHHhcCCchhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 003530 276 NGRLQPLLTQILEG-PQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQI 344 (813)
Q Consensus 276 ~G~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~L 344 (813)
.++..+++|.+. +..++...+-+|+-.|.+...+..+ ..|=.++.+.+.-+++.|+-++..+
T Consensus 586 --~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a~-----diL~~L~~D~~dfVRQ~AmIa~~mI 648 (926)
T COG5116 586 --LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVAT-----DILEALMYDTNDFVRQSAMIAVGMI 648 (926)
T ss_pred --hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHHH-----HHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 233444444433 5566666666666555433322221 1222334444455555554444443
No 325
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=72.25 E-value=37 Score=35.08 Aligned_cols=149 Identities=13% Similarity=0.148 Sum_probs=87.5
Q ss_pred cHHHHHHHHHHHhhcCCcccccccccC-cHHHHHHHhc----CCCHHHHHHHHHHHHHhhccCcchhhhhhcCC--CHHH
Q 003530 124 DIMPALKYVQYFCQSSRSNKHVVHNSE-LIPMIIDMLK----SSSRKVRCTALETLRIVVEEDDDNKEILGQGD--TVRT 196 (813)
Q Consensus 124 ~~~~al~~l~~l~~~~~~~r~~i~~~g-~i~~Lv~lL~----s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g--~i~~ 196 (813)
...-+++-++-.....+.....-...+ ....+..++. +..+..+.-+++.++|+..+. ..+..+.+.. .+..
T Consensus 79 ~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~-~~~~~~~~~~~~~i~~ 157 (268)
T PF08324_consen 79 SRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHP-PGRQLLLSHFDSSILE 157 (268)
T ss_dssp C-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSC-CCHHHHHCTHHTCHHH
T ss_pred cchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCC-ccHHHHHhcccchHHH
Confidence 334455555444443333222111121 2344444442 346788899999999998765 6666666544 3545
Q ss_pred HHHHhccC----cHHHHHHHHHHHHHhhcCchhHh---HHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCcc
Q 003530 197 IVKFLSHE----LSREREEAVSLLYELSKSEALCE---KIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENN 269 (813)
Q Consensus 197 Lv~lL~~~----~~~~~~~a~~~L~~ls~~~~~~~---~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~ 269 (813)
.+..+... +...|..++.++.|++..-.... .. ....+..++..+.....++++..+++.+|.+|...+..
T Consensus 158 ~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~--~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~ 235 (268)
T PF08324_consen 158 LLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEW--QSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDS 235 (268)
T ss_dssp HCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCH--HHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHH--HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChh
Confidence 55444444 67788999999999975321111 11 11345666664432247899999999999999866655
Q ss_pred HHHHHH
Q 003530 270 VRQMAE 275 (813)
Q Consensus 270 ~~~i~~ 275 (813)
...+.+
T Consensus 236 ~~~~~~ 241 (268)
T PF08324_consen 236 AKQLAK 241 (268)
T ss_dssp HHHHCC
T ss_pred HHHHHH
Confidence 555554
No 326
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=72.06 E-value=2.2e+02 Score=33.99 Aligned_cols=200 Identities=15% Similarity=0.167 Sum_probs=115.3
Q ss_pred HHhcCCCCCHHHHHHHHhcCcHHHHHHHhhhhccccccCCccchhhhHhHHHHHHHHhccCCCChHHHHHHHHcCchHHH
Q 003530 527 LLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALF 606 (813)
Q Consensus 527 ~L~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~~i~~L 606 (813)
+|.+++..+++..+.+.+.|+...+...+..- ...++.-.+.+.+.+++.... ..+......... ...+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f---------~~~~~~~~il~~l~n~~~~~~-~~~~~~~~~~~~-~~~f 562 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF---------DNEELHRKILGLLGNLAEVLE-LRELLMIFEFID-FSVF 562 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc---------cchhHHHHHHHHHHHHHHHhh-hhhhhhHHHHHH-HHHH
Confidence 88899999999999999999999999999863 245677778888888874311 111111111111 1233
Q ss_pred HHHHhcCCchHHHHHHHHHHhhhccccccccCCCCCCCCCCCcccccccccCCCCCCCCcccccccCccccchhhhccch
Q 003530 607 IELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAV 686 (813)
Q Consensus 607 ~~lL~~~~~~~vk~~Aa~aL~~ls~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gai 686 (813)
-.++......+.-..|+..|+.+..+++.....+.+. .+...++.++..-. -.+. ...-...+
T Consensus 563 ~~~~~~w~~~ersY~~~siLa~ll~~~~~~~~~~~r~--~~~~~l~e~i~~~~----------~~~~-----~~~~~~~f 625 (699)
T KOG3665|consen 563 KVLLNKWDSIERSYNAASILALLLSDSEKTTECVFRN--SVNELLVEAISRWL----------TSEI-----RVINDRSF 625 (699)
T ss_pred HHHHhhcchhhHHHHHHHHHHHHHhCCCcCccccchH--HHHHHHHHHhhccC----------ccce-----eehhhhhc
Confidence 3444444133778888888988877765411100000 00000111221000 0000 01112233
Q ss_pred HH-HHHhhc-cCchhHHHHHHHHHHhhhhcCcchhhHHHHHHhhcCcHHHHHHHhhcCChHHHHHHHHHHHHH
Q 003530 687 EK-LIALLD-HTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERI 757 (813)
Q Consensus 687 ~~-Lv~lL~-~~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~~a~~aL~~i 757 (813)
.| +-+++. +..++.+.-|+.++.++..... .++..+.+.++++-+...-..+...++++.+...+...
T Consensus 626 ~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 695 (699)
T KOG3665|consen 626 FPRILRILRLSKSDGSQLWALWTIKNVLEQNK---EYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC 695 (699)
T ss_pred chhHHHHhcccCCCchHHHHHHHHHHHHHcCh---hhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence 34 555555 6778899999999999986654 37788889999988766553222344455555444433
No 327
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=71.81 E-value=5.8 Score=45.42 Aligned_cols=52 Identities=6% Similarity=0.039 Sum_probs=37.8
Q ss_pred CCCCceecccccccCCCce----ecC---CCchhcHHHHHHHHHHhhhCCCCCCCCCCC
Q 003530 28 PIYDAFVCPLTKQVMRDPV----TLE---NGQTFEREAIEKWFKECRENGRKPVCPLTQ 79 (813)
Q Consensus 28 ~~~~~~~Cpi~~~~m~dpv----~~~---~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~ 79 (813)
..++..+|++|..-+.+|| +.| |+|.+|-.||..|.+.-........|++|.
T Consensus 92 K~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~ 150 (1134)
T KOG0825|consen 92 KTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCE 150 (1134)
T ss_pred ccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHH
Confidence 3456789999999999965 245 899999999999998622222224567764
No 328
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=70.94 E-value=46 Score=30.25 Aligned_cols=72 Identities=21% Similarity=0.224 Sum_probs=58.8
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcc-hhhhhhcCCCHHHHHHHhcc---CcHHHHHHHHHHHHHhhc
Q 003530 150 ELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDD-NKEILGQGDTVRTIVKFLSH---ELSREREEAVSLLYELSK 221 (813)
Q Consensus 150 g~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~-~~~~i~~~g~i~~Lv~lL~~---~~~~~~~~a~~~L~~ls~ 221 (813)
.++..|.+.|+++++.++..|+..|-.+...... ....+.....+..|++++.. .+..++..++.++...+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3577788889999999999999999999887644 67778777888889999975 467788888888887764
No 329
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.94 E-value=5.3 Score=42.47 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=39.7
Q ss_pred CCCceecccccccCCC---ceecCCCchhcHHHHHHHHHHhhhCCC--CCCCCCCCc
Q 003530 29 IYDAFVCPLTKQVMRD---PVTLENGQTFEREAIEKWFKECRENGR--KPVCPLTQK 80 (813)
Q Consensus 29 ~~~~~~Cpi~~~~m~d---pv~~~~g~t~~r~~i~~~~~~~~~~~~--~~~CP~t~~ 80 (813)
....|.|-||.+-..- =+.+||+|.|||.|...|+..+.+.|. .-.||.++.
T Consensus 181 ~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 181 VNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred HhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 4456999999987733 345999999999999999998665553 245887765
No 330
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=70.80 E-value=4 Score=42.56 Aligned_cols=61 Identities=18% Similarity=0.221 Sum_probs=44.5
Q ss_pred CCCceecccccccCCCcee-cCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCcccHhhHHHHHHHH
Q 003530 29 IYDAFVCPLTKQVMRDPVT-LENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNPSIALRNTIEEWN 101 (813)
Q Consensus 29 ~~~~~~Cpi~~~~m~dpv~-~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~~~ 101 (813)
..+-+.||+|.+.|.-|+. -..||..|-+|=.+- ...||.|+.++. -+.++++.+.++.-+
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~---------~~~CP~Cr~~~g---~~R~~amEkV~e~~~ 106 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV---------SNKCPTCRLPIG---NIRCRAMEKVAEAVL 106 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhhh---------cccCCccccccc---cHHHHHHHHHHHhce
Confidence 3455899999999999986 677999999883321 367999988764 224566666666653
No 331
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=70.77 E-value=1.7 Score=49.71 Aligned_cols=67 Identities=19% Similarity=0.429 Sum_probs=49.4
Q ss_pred CceecccccccCCCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCcccHhhHHHHHHH
Q 003530 31 DAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNPSIALRNTIEEW 100 (813)
Q Consensus 31 ~~~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~~ 100 (813)
....||||.+...+|+++.|-|.||+.|+-..|.. .++ ...||+|+...............+++++.
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~--~~~-~~~~~lc~~~~eK~s~~Es~r~sq~vqe~ 86 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFES--KKG-PKQCALCKSDIEKRSLRESPRFSQLSKES 86 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceeec--cCc-cccchhhhhhhhhhhccccchHHHHHHHh
Confidence 45889999999999999999999999998887765 123 37899998655433333344445666644
No 332
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=69.87 E-value=44 Score=28.51 Aligned_cols=74 Identities=12% Similarity=0.005 Sum_probs=54.9
Q ss_pred HhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHH
Q 003530 226 CEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFL 301 (813)
Q Consensus 226 ~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L 301 (813)
...+.+..+.+..|+..++ .++.-..+.+...|..|..++.....+.+-|++..|-++-..-++..+...-.++
T Consensus 22 ~~dl~~~~~Ll~~LleWFn--f~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 22 EEDLVKERLLLKQLLEWFN--FPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHccHHHHHHHHHHHhC--CCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444455677888888888 5666688899999999999999999999999998876665555666555544444
No 333
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=69.82 E-value=1.5e+02 Score=31.04 Aligned_cols=227 Identities=9% Similarity=0.114 Sum_probs=142.0
Q ss_pred HHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc-hhHHHHHhh-h-HHHHHH-HHhc-C-CHHHHHHHHHHHHHh
Q 003530 271 RQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNS-DVKVLVART-V-GSCLIN-IMKS-G-NMQAREAALKALNQI 344 (813)
Q Consensus 271 ~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~-g-i~~Lv~-lL~~-~-~~~~~~~a~~aL~~L 344 (813)
..+.++|.+..||+.|...+-+.+..++....++-... ..+....+. . =+.++. ++.. . .+++.-.+...|...
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEc 152 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLREC 152 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 45778899999999999999888888888888875522 222222221 1 022222 2222 2 356666777777776
Q ss_pred hCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccc---hhhHHHHHHh
Q 003530 345 SSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVS---EDIVHNLLHL 421 (813)
Q Consensus 345 s~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~---~~~v~~Lv~l 421 (813)
.+++.-.+.+....-....-..++.. .-++-..|..+...+......... ..+.. .-..+.--.|
T Consensus 153 irhe~LakiiL~s~~~~~FF~~vq~p-----~FdiasdA~~tfK~llt~Hk~~va-------Efl~~n~d~ff~e~~~~L 220 (342)
T KOG1566|consen 153 IRHEFLAKIILESTNFEKFFLYVQLP-----NFDIASDAFSTFKELLTRHKSVVA-------EFLIRNYDNFFAEVYEKL 220 (342)
T ss_pred HhhHHHHHHHHcchhHHHHHHHHhcc-----chHHHHHHHHHHHHHHHHhHHHHH-------HHHHhChhhhHHHHHHHH
Confidence 66766666666666666666666643 245556666666655443211100 00000 0112334567
Q ss_pred hcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCC--CCCHHHHHHHhc
Q 003530 422 ISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSP--HMGHELADALRG 499 (813)
Q Consensus 422 L~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~--~~~~~~~~~l~~ 499 (813)
+.+++.-++..+...|..+--+..+...+.+-+.+-..+..+..+|++++..+|..|-........ +.+..+.+.+..
T Consensus 221 l~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~ 300 (342)
T KOG1566|consen 221 LRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVR 300 (342)
T ss_pred hcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHh
Confidence 889999999999999999887766555555666666778899999999999999999887776653 335555554443
Q ss_pred ccccHHHHHHhhh
Q 003530 500 AVGQLGSLIRVIS 512 (813)
Q Consensus 500 ~~g~i~~Lv~ll~ 512 (813)
. =+.|++++.
T Consensus 301 N---r~KLl~~l~ 310 (342)
T KOG1566|consen 301 N---RPKLLELLH 310 (342)
T ss_pred C---cHHHHHHHH
Confidence 3 134444444
No 334
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=67.51 E-value=3.2 Score=42.36 Aligned_cols=43 Identities=26% Similarity=0.542 Sum_probs=31.7
Q ss_pred ceecccccccC----CCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCc
Q 003530 32 AFVCPLTKQVM----RDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQK 80 (813)
Q Consensus 32 ~~~Cpi~~~~m----~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~ 80 (813)
++-||||.+.+ .+|..++|||+--..|.++... +. ++||.|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~-----~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMIC-----EG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhc-----cC-CCCCcccc
Confidence 46699999877 6778899999865455555444 33 89999965
No 335
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=67.37 E-value=2.6e+02 Score=32.92 Aligned_cols=272 Identities=17% Similarity=0.174 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHhhC---CcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCC
Q 003530 329 GNMQAREAALKALNQISS---CEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPD 405 (813)
Q Consensus 329 ~~~~~~~~a~~aL~~Ls~---~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~ 405 (813)
.+..-.+-|.+.+.++.. .+.-..-+.+.-+++.++..+++.. --++..|+..+..+ ..++..
T Consensus 428 dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~y-----gfL~Srace~is~~---eeDfkd------ 493 (970)
T COG5656 428 DNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNY-----GFLKSRACEFISTI---EEDFKD------ 493 (970)
T ss_pred ccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcc-----cchHHHHHHHHHHH---HHhccc------
Q ss_pred CccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHH-HHHHH
Q 003530 406 NQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASI-ELIQN 484 (813)
Q Consensus 406 ~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~-~~L~~ 484 (813)
.-.-..+.+....++++.+-.++-.|+-+|.-+-.+........+.+. +.++.|+.+-+.-+-++..... ..+..
T Consensus 494 --~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp--~tmekLLsLSn~feiD~LS~vMe~fVe~ 569 (970)
T COG5656 494 --NGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVP--ETMEKLLSLSNTFEIDPLSMVMESFVEY 569 (970)
T ss_pred --chHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhh--HHHHHHHHhcccccchHHHHHHHHHHHH
Q ss_pred hC---CCCCHHHHHHHhcccccHHHHHHhhhcCCC----ChHHHHHHHHHHhcC-----CCCCHHHHHHHHhcCcHHHHH
Q 003530 485 LS---PHMGHELADALRGAVGQLGSLIRVISENVG----ISKEQAAAVGLLAEL-----PERDLGLTRQMLDEGAFGLIF 552 (813)
Q Consensus 485 Ls---~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~----~~~~~~~a~~~L~~L-----~~~~~~~~~~l~~~g~v~~L~ 552 (813)
.+ .....+.+..+... .++.-..++..+++ .++-+.+|.|+|..+ +..+....-.-.+....|.+-
T Consensus 570 fseELspfa~eLa~~Lv~q--Flkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~ 647 (970)
T COG5656 570 FSEELSPFAPELAGSLVRQ--FLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVIS 647 (970)
T ss_pred hHHhhchhHHHHHHHHHHH--HHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Q ss_pred HHhhhhccccccCCccchhhhHhHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHHhcCCchHHHHHHHHHHhhhccc
Q 003530 553 SRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLE 632 (813)
Q Consensus 553 ~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~vk~~Aa~aL~~ls~~ 632 (813)
=.|.+ ...++-..++..|-.+|.. ..++-..+= |+...+..++.+.....--..++-+|-|+..-
T Consensus 648 Filkn----------~i~dfy~Ea~dildg~tf~---skeI~pimw--gi~Ell~~~l~~~~t~~y~ee~~~al~nfity 712 (970)
T COG5656 648 FILKN----------EISDFYQEALDILDGYTFM---SKEIEPIMW--GIFELLLNLLIDEITAVYSEEVADALDNFITY 712 (970)
T ss_pred HHHhh----------hHHHHHHHHHHHHhhhhHH---HHHhhhhhh--HHHHHHHhcccccchhhhHHHHHHHHHHHHHh
Q ss_pred ccc
Q 003530 633 SKN 635 (813)
Q Consensus 633 ~~~ 635 (813)
+++
T Consensus 713 G~~ 715 (970)
T COG5656 713 GKT 715 (970)
T ss_pred Ccc
No 336
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=66.37 E-value=43 Score=38.44 Aligned_cols=105 Identities=13% Similarity=0.185 Sum_probs=68.7
Q ss_pred cHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHH
Q 003530 151 LIPMIIDMLK-SSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKI 229 (813)
Q Consensus 151 ~i~~Lv~lL~-s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i 229 (813)
-.|.|+..+. +++|.+|..|+-.|+.+..--... + ...-.-|.+-|.+.+.++|+.+..++..|-.....
T Consensus 934 hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~----~-de~t~yLyrrL~De~~~V~rtclmti~fLilagq~---- 1004 (1128)
T COG5098 934 HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTT----A-DEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQL---- 1004 (1128)
T ss_pred HHHHHHHHHhhCCCcceeccceeeccccceehhhh----h-HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccce----
Confidence 3677888775 778888888877777653211011 1 11245566777788888888888888777543322
Q ss_pred hhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCC
Q 003530 230 GSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCE 267 (813)
Q Consensus 230 ~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~ 267 (813)
+..|-++.++.+|. ++|.++..-|-..+-.++..+
T Consensus 1005 -KVKGqlg~ma~~L~--deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098 1005 -KVKGQLGKMALLLT--DEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred -eeccchhhhHhhcc--CCcchHHHHHHHHHHHHHhcc
Confidence 23577777888887 677777777777776665544
No 337
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=65.81 E-value=20 Score=33.02 Aligned_cols=72 Identities=13% Similarity=0.125 Sum_probs=58.3
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-cchhhhhhcCCCHHHHHHHhc-cCcHHHHHHHHHHHHHhhc
Q 003530 150 ELIPMIIDMLKSSSRKVRCTALETLRIVVEED-DDNKEILGQGDTVRTIVKFLS-HELSREREEAVSLLYELSK 221 (813)
Q Consensus 150 g~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~ls~ 221 (813)
.++..|.+.|.++++.++..|+..|-.+.... ......+.+.+.+..|+++++ ..++.++..++.++...+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 45677778888999999999999999888763 457778888899999999997 4566778888888877653
No 338
>PF14353 CpXC: CpXC protein
Probab=65.36 E-value=3.4 Score=37.41 Aligned_cols=48 Identities=17% Similarity=0.161 Sum_probs=32.2
Q ss_pred ceecccccccCCCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCC
Q 003530 32 AFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKEL 82 (813)
Q Consensus 32 ~~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l 82 (813)
+.+||-|+..+.=.+-..=+-+.+....++-++. +=..++||.||..+
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g---~l~~~~CP~Cg~~~ 48 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDG---SLFSFTCPSCGHKF 48 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcC---CcCEEECCCCCCce
Confidence 3689999999977765333335666666666642 11237899999754
No 339
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=64.78 E-value=24 Score=29.68 Aligned_cols=68 Identities=22% Similarity=0.238 Sum_probs=54.0
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhcc
Q 003530 194 VRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEK 265 (813)
Q Consensus 194 i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~ 265 (813)
....+..|.++.+.+|.+++..|.+|..... ..+...++.+..+...|+ ++++-+--+|+..|..|+.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~--d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLK--DEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcC--CCCchHHHHHHHHHHHHHH
Confidence 3456677888889999999999999988776 333344678888888998 7888888889998888854
No 340
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=64.30 E-value=23 Score=32.71 Aligned_cols=71 Identities=14% Similarity=0.181 Sum_probs=58.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc-chhhhhhcCCCHHHHHHHhcc-CcHHHHHHHHHHHHHhhc
Q 003530 151 LIPMIIDMLKSSSRKVRCTALETLRIVVEEDD-DNKEILGQGDTVRTIVKFLSH-ELSREREEAVSLLYELSK 221 (813)
Q Consensus 151 ~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~ls~ 221 (813)
++..|.+.|.++++.++..|+..|-.++.... .....+.+...+..|++++.. .+..++...+.++...+.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 56677788889999999999999998887653 467788888999999999987 677788888888877653
No 341
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=64.14 E-value=1.8e+02 Score=29.96 Aligned_cols=216 Identities=18% Similarity=0.120 Sum_probs=114.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhcc--CcHHHHHHHHHHHHHhhcCchhHhHHhhh
Q 003530 155 IIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSH--ELSREREEAVSLLYELSKSEALCEKIGSI 232 (813)
Q Consensus 155 Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~ls~~~~~~~~i~~~ 232 (813)
|-..|.+++...|.+|+..|..+...-+... ....-+..|+....+ .|......++..+..|..........+
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~-- 78 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESA-- 78 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhH--
Confidence 4456788999999999999988765433221 223335666655533 344555556777777764433221111
Q ss_pred hchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHc--CChHHHHHHHccC-CHHHHHHHHHHHHHhcCCch
Q 003530 233 NGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAEN--GRLQPLLTQILEG-PQETKLSLAAFLGDLALNSD 309 (813)
Q Consensus 233 ~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~--G~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~ 309 (813)
...+..+.+-...++-....|..+..+|..|-.+ ....+.+. +.+..+++.+... |+.-...+-..+..+...-+
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 1233333333322233445667777777776433 22233322 4566666666543 66655555555555543222
Q ss_pred hHHHHHhhhHHHHHHHHhc---------C-CH-H-HHHHHHHHHHH-hhCCcccHHHHHHcCChHHHHHHHhccCCCCCC
Q 003530 310 VKVLVARTVGSCLINIMKS---------G-NM-Q-AREAALKALNQ-ISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLP 376 (813)
Q Consensus 310 ~~~~i~~~gi~~Lv~lL~~---------~-~~-~-~~~~a~~aL~~-Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~ 376 (813)
. ......+.+.+.. + ++ . .++.-..+|.+ |+.++.-.. -++|.|++-|.+. .
T Consensus 157 ~-----~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~-----~~~p~LleKL~s~-----~ 221 (262)
T PF14500_consen 157 I-----SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP-----FAFPLLLEKLDST-----S 221 (262)
T ss_pred c-----chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH-----HHHHHHHHHHcCC-----C
Confidence 1 1112333333321 1 11 1 12333333333 333443333 3789999999875 3
Q ss_pred hhHHHHHHHHHHHHHh
Q 003530 377 MRLKEVSATILANVVN 392 (813)
Q Consensus 377 ~~~~~~a~~~L~nL~~ 392 (813)
..+|..++.+|..++.
T Consensus 222 ~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 222 PSVKLDSLQTLKACIE 237 (262)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 6799999999987655
No 342
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=64.12 E-value=21 Score=32.84 Aligned_cols=68 Identities=12% Similarity=0.198 Sum_probs=54.0
Q ss_pred HHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHh
Q 003530 460 TISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLA 529 (813)
Q Consensus 460 i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~ 529 (813)
+..|..-|.++++.++..|+.+|-.+..+.+..+...+... +.+..|++++....+ ..++..++.++.
T Consensus 43 ~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~-~fl~~l~~l~~~~~~-~~Vk~kil~li~ 110 (142)
T cd03569 43 MRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASR-EFMDELKDLIKTTKN-EEVRQKILELIQ 110 (142)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhH-HHHHHHHHHHcccCC-HHHHHHHHHHHH
Confidence 55667778889999999999999999988888888888876 899999999976333 467776666654
No 343
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=63.58 E-value=2.9e+02 Score=32.17 Aligned_cols=211 Identities=15% Similarity=0.119 Sum_probs=108.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhc--cCcchhhhhhcCC---CHHHHHHHhccCcHHHHHHHHHHHHHhhcC-ch
Q 003530 151 LIPMIIDMLKSSSRKVRCTALETLRIVVE--EDDDNKEILGQGD---TVRTIVKFLSHELSREREEAVSLLYELSKS-EA 224 (813)
Q Consensus 151 ~i~~Lv~lL~s~~~~~~~~al~~L~~L~~--~~~~~~~~i~~~g---~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~-~~ 224 (813)
.+-.|+++|+.-+.+.......-+.. .. ...-..+.+...| ++..+...+.++.... ..++.++..+... ..
T Consensus 312 ~f~~lv~~lR~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~-~ea~~~~~~~~~~~~~ 389 (574)
T smart00638 312 KFLRLVRLLRTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITP-LEAAQLLAVLPHTARY 389 (574)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhhhc
Confidence 45567777776655554444444332 10 0011233444444 4556666666654332 2223333322211 11
Q ss_pred hHhHHhhhhchHHHHHHhcccC--CCCHHHHHHHHHHHHhh----ccCCccHHHHHHcCChHHHHHHHcc----CCHHHH
Q 003530 225 LCEKIGSINGAILILVGMTSSK--SENLLTVEKAEKTLANL----EKCENNVRQMAENGRLQPLLTQILE----GPQETK 294 (813)
Q Consensus 225 ~~~~i~~~~g~i~~Lv~lL~~~--s~~~~~~~~a~~~L~~L----~~~~~~~~~i~~~G~i~~Lv~lL~~----~~~~~~ 294 (813)
. ....+..+..++..+ ...+.+...|.-++.++ |.+.+.+........++.+.+.|.. .+.+-+
T Consensus 390 P------t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 463 (574)
T smart00638 390 P------TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEI 463 (574)
T ss_pred C------CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchhe
Confidence 1 223455666666521 23445566666666555 3333332111222356666666643 355556
Q ss_pred HHHHHHHHHhcCCchhHHHHHhhhHHHHHHHHh-c--CCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccC
Q 003530 295 LSLAAFLGDLALNSDVKVLVARTVGSCLINIMK-S--GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVG 371 (813)
Q Consensus 295 ~~a~~~L~~L~~~~~~~~~i~~~gi~~Lv~lL~-~--~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~ 371 (813)
.....+|+|+.... .++.|...+. . .+..++..|+.||..++...... +-+.|+.++.+..
T Consensus 464 ~~~LkaLGN~g~~~---------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~-------v~~~l~~i~~n~~ 527 (574)
T smart00638 464 QLYLKALGNAGHPS---------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK-------VQEVLLPIYLNRA 527 (574)
T ss_pred eeHHHhhhccCChh---------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH-------HHHHHHHHHcCCC
Confidence 66777888765422 2345555554 2 35678999999999887522111 3355777777653
Q ss_pred CCCCChhHHHHHHHHHH
Q 003530 372 SNHLPMRLKEVSATILA 388 (813)
Q Consensus 372 ~~~~~~~~~~~a~~~L~ 388 (813)
.+.++|..|..+|.
T Consensus 528 ---e~~EvRiaA~~~lm 541 (574)
T smart00638 528 ---EPPEVRMAAVLVLM 541 (574)
T ss_pred ---CChHHHHHHHHHHH
Confidence 35777877766663
No 344
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=63.40 E-value=23 Score=32.72 Aligned_cols=69 Identities=9% Similarity=0.215 Sum_probs=55.3
Q ss_pred HHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhc
Q 003530 460 TISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAE 530 (813)
Q Consensus 460 i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~ 530 (813)
+..|..-+.++++.++..|+.+|-.+..+.+..+...+... ..+..|++++....+ .+++...+.+|..
T Consensus 39 ~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask-~Fl~eL~kl~~~~~~-~~Vk~kil~li~~ 107 (144)
T cd03568 39 LKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASR-DFTQELKKLINDRVH-PTVKEKLREVVKQ 107 (144)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhH-HHHHHHHHHhcccCC-HHHHHHHHHHHHH
Confidence 45666677888999999999999999988899888888876 899999999988543 4777766666543
No 345
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=63.16 E-value=57 Score=30.73 Aligned_cols=144 Identities=14% Similarity=0.087 Sum_probs=74.5
Q ss_pred ChHHHHHHHccC-CHHHHHHHHHHHHHhcCCchhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHH
Q 003530 278 RLQPLLTQILEG-PQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIH 356 (813)
Q Consensus 278 ~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~ 356 (813)
.++.|+.+|+.+ +..+|.++.++|+.|..-+..+........+.-.. ...+..... ..+.+.... ...+...-
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~--~~~~~~~~~---~~l~~~~~~-~~~ee~y~ 84 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSS--ENSNDESTD---ISLPMMGIS-PSSEEYYP 84 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCcccc--ccccccchh---hHHhhccCC-CchHHHHH
Confidence 356677788766 68999999999999976333222211110000000 000000111 111111111 12333344
Q ss_pred cCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHH
Q 003530 357 AGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQV 436 (813)
Q Consensus 357 ~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~ 436 (813)
..++..|+++|++.+ -..-...++.++.++......+ .. -.-..++|.+++.++..++..++....-
T Consensus 85 ~vvi~~L~~iL~D~s----Ls~~h~~vv~ai~~If~~l~~~-cv--------~~L~~viP~~l~~i~~~~~~~~e~~~~q 151 (160)
T PF11865_consen 85 TVVINALMRILRDPS----LSSHHTAVVQAIMYIFKSLGLK-CV--------PYLPQVIPIFLRVIRTCPDSLREFYFQQ 151 (160)
T ss_pred HHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHhcCcC-ch--------hHHHHHhHHHHHHHHhCCHHHHHHHHHH
Confidence 447788888888754 1233445666666665432211 11 1225788999999987777888776665
Q ss_pred HHHc
Q 003530 437 LVGL 440 (813)
Q Consensus 437 L~~L 440 (813)
|..|
T Consensus 152 L~~l 155 (160)
T PF11865_consen 152 LADL 155 (160)
T ss_pred HHHH
Confidence 5544
No 346
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=63.16 E-value=64 Score=27.53 Aligned_cols=68 Identities=16% Similarity=0.201 Sum_probs=50.5
Q ss_pred cCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHH
Q 003530 190 QGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTL 260 (813)
Q Consensus 190 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L 260 (813)
..+.+..|+...+.+.......+...|..+..++.....+. .-|+...|-++-. ..++..+...-.++
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~-~iG~~~fL~klr~--~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILR-DIGAVRFLSKLRP--NVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHH-HccHHHHHHHHHh--cCCHHHHHHHHHHH
Confidence 34456667777778887888999999999999998887776 4698998777765 55666665555444
No 347
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=62.43 E-value=1.1e+02 Score=33.23 Aligned_cols=145 Identities=13% Similarity=0.134 Sum_probs=75.3
Q ss_pred HHHHHHhhhCCCh-HHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhh-hcCCCChHHHHHHHHHHhcCCCCCHH
Q 003530 460 TISLVQFVEAPQN-DLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVI-SENVGISKEQAAAVGLLAELPERDLG 537 (813)
Q Consensus 460 i~~Lv~lL~~~~~-~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll-~~~~~~~~~~~~a~~~L~~L~~~~~~ 537 (813)
.+-+-.-++.++. .-|.+|+.++..|++.....+...+. +.+..++.-- .++......+..|..+++.|+.....
T Consensus 212 ~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~---~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t 288 (370)
T PF08506_consen 212 EEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM---QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGST 288 (370)
T ss_dssp HHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--
T ss_pred HHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhcc
Confidence 3334444443333 45678889999988543333222221 1233222211 12222236777888887777543321
Q ss_pred H------------HHHHHhcCcHHHHHHHhhhhccccccCCccchhhhHhHHHHHHHHhccCCCChHHHHHHHHcCchHH
Q 003530 538 L------------TRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAAL 605 (813)
Q Consensus 538 ~------------~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~~~~~l~~~~~~~~~~~~~~~i~~ 605 (813)
. ...+....++|.|. .+ ....+-++..|+..+..|-..+ .++ .+ .+++|.
T Consensus 289 ~~~Gvt~~~~~v~v~~Ff~~~v~peL~---~~--------~~~~piLka~aik~~~~Fr~~l--~~~---~l--~~~~~~ 350 (370)
T PF08506_consen 289 TKSGVTQTNELVDVVDFFSQHVLPELQ---PD--------VNSHPILKADAIKFLYTFRNQL--PKE---QL--LQIFPL 350 (370)
T ss_dssp BTTB-S-B-TTS-HHHHHHHHTCHHHH----S--------S-S-HHHHHHHHHHHHHHGGGS---HH---HH--HHHHHH
T ss_pred ccCCcccccccccHHHHHHHHhHHHhc---cc--------CCCCcchHHHHHHHHHHHHhhC--CHH---HH--HHHHHH
Confidence 1 12222333333332 01 1123456667888888877442 222 22 257899
Q ss_pred HHHHHhcCCchHHHHHHHHHH
Q 003530 606 FIELLQSNGLDKVQMVSATAL 626 (813)
Q Consensus 606 L~~lL~~~~~~~vk~~Aa~aL 626 (813)
++..|.++ +..|...||.++
T Consensus 351 l~~~L~~~-~~vv~tyAA~~i 370 (370)
T PF08506_consen 351 LVNHLQSS-SYVVHTYAAIAI 370 (370)
T ss_dssp HHHHTTSS--HHHHHHHHHHH
T ss_pred HHHHhCCC-CcchhhhhhhhC
Confidence 99999999 899999999875
No 348
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=62.08 E-value=25 Score=31.96 Aligned_cols=68 Identities=12% Similarity=0.187 Sum_probs=53.1
Q ss_pred HHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHH
Q 003530 460 TISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLL 528 (813)
Q Consensus 460 i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L 528 (813)
+..|..-|.++++.++..|+.+|-.+..+.+..+...+... +.+..|++++........++..++.++
T Consensus 39 ~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~-~fl~~L~~l~~~~~~~~~Vk~kil~li 106 (133)
T smart00288 39 VRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASK-EFLNELVKLIKPKYPLPLVKKRILELI 106 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhH-HHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 45566677889999999999999999988888888888776 899999999988775222566555554
No 349
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=61.99 E-value=2e+02 Score=29.67 Aligned_cols=166 Identities=16% Similarity=0.166 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHhhcCchh-------HhHHhhhhchHHHHHHhcccCCCC----HHHHHHHHHHHHhhccCCccHHHHHH
Q 003530 207 REREEAVSLLYELSKSEAL-------CEKIGSINGAILILVGMTSSKSEN----LLTVEKAEKTLANLEKCENNVRQMAE 275 (813)
Q Consensus 207 ~~~~~a~~~L~~ls~~~~~-------~~~i~~~~g~i~~Lv~lL~~~s~~----~~~~~~a~~~L~~L~~~~~~~~~i~~ 275 (813)
...+.+..+|..|+..+.. .+.....-+.+|.++.-+. +++ ......++..|..++....
T Consensus 77 ~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d--~~~~i~~~~~~~~~A~~La~~a~~~~------- 147 (262)
T PF14225_consen 77 STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFD--DPNPIQPDQECIEIAEALAQVAEAQG------- 147 (262)
T ss_pred CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhc--ccccccccHHHHHHHHHHHHHHHhCC-------
Confidence 3456777888887754321 1222223356777777666 333 1334456677777663211
Q ss_pred cCChHHHHHHHccC----CHHHHHHHHHHHHHhcCCchhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccH
Q 003530 276 NGRLQPLLTQILEG----PQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSA 351 (813)
Q Consensus 276 ~G~i~~Lv~lL~~~----~~~~~~~a~~~L~~L~~~~~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~ 351 (813)
.+.+..++.....+ ..+....++..|..-.. ++ ..-..+..|+++|..+.+.++..++.+|..+-..-+.+
T Consensus 148 ~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~ 222 (262)
T PF14225_consen 148 LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-PD----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR 222 (262)
T ss_pred CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-ch----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC
Confidence 11222222222222 22333334444443211 10 00112567889999899999999999999998765444
Q ss_pred HHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCC
Q 003530 352 KVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGH 395 (813)
Q Consensus 352 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~ 395 (813)
.. ...+.+.++++++++ +....|+.+|-+....+.
T Consensus 223 ~~-~~~dlispllrlL~t--------~~~~eAL~VLd~~v~~s~ 257 (262)
T PF14225_consen 223 SP-HGADLISPLLRLLQT--------DLWMEALEVLDEIVTRSG 257 (262)
T ss_pred CC-cchHHHHHHHHHhCC--------ccHHHHHHHHHHHHhhcc
Confidence 33 455689999999985 456778888877765443
No 350
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=61.58 E-value=3.1e+02 Score=31.82 Aligned_cols=167 Identities=14% Similarity=0.081 Sum_probs=94.9
Q ss_pred HHhccCcHHHHHHHHHHHHHhhcCchhHhHHhh---hhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHH
Q 003530 199 KFLSHELSREREEAVSLLYELSKSEALCEKIGS---INGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAE 275 (813)
Q Consensus 199 ~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~---~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~ 275 (813)
..+-.-..+.+--|..+|+-+..+......+.. ....+..++..+. .++..+--++++|.|+-.++-++.-+..
T Consensus 551 ~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~---~~~an~ll~vR~L~N~f~~~~g~~~~~s 627 (745)
T KOG0301|consen 551 AILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN---ADPANQLLVVRCLANLFSNPAGRELFMS 627 (745)
T ss_pred HHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc---cchhHHHHHHHHHHHhccCHHHHHHHHH
Confidence 333344455666777778777776644433322 1224555665554 5677788899999999888777766554
Q ss_pred c--CChHHHHHHHccCCHHHHHHHHHHHHHhcC--CchhHHHHHhhhHHHHHHHHh---c--CCHHHHHHHHHHHHHhhC
Q 003530 276 N--GRLQPLLTQILEGPQETKLSLAAFLGDLAL--NSDVKVLVARTVGSCLINIMK---S--GNMQAREAALKALNQISS 346 (813)
Q Consensus 276 ~--G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~--~~~~~~~i~~~gi~~Lv~lL~---~--~~~~~~~~a~~aL~~Ls~ 346 (813)
. -.+.++++.=...+..++...+....|++. ..++-+ ..+.+.|...+. . .+-+.....+.||.+|+.
T Consensus 628 ~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~---~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t 704 (745)
T KOG0301|consen 628 RLESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ---LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMT 704 (745)
T ss_pred HHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc---cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcc
Confidence 3 122222222222244555554444444432 111111 112233333222 1 233456778888999999
Q ss_pred CcccHHHHHHcCChHHHHHHHhccC
Q 003530 347 CEPSAKVLIHAGILPPLVKDLFTVG 371 (813)
Q Consensus 347 ~~~~~~~i~~~g~i~~Lv~lL~~~~ 371 (813)
.+.....+.+.-.+..++.-++...
T Consensus 705 ~~~~~~~~A~~~~v~sia~~~~~~~ 729 (745)
T KOG0301|consen 705 VDASVIQLAKNRSVDSIAKKLKEAV 729 (745)
T ss_pred ccHHHHHHHHhcCHHHHHHHHHHhc
Confidence 8888888887777888888887654
No 351
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=61.53 E-value=59 Score=37.72 Aligned_cols=131 Identities=13% Similarity=0.079 Sum_probs=86.3
Q ss_pred hchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHH-HccCCHHHHHHHHHHHHHhcCCchhH
Q 003530 233 NGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQ-ILEGPQETKLSLAAFLGDLALNSDVK 311 (813)
Q Consensus 233 ~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~l-L~~~~~~~~~~a~~~L~~L~~~~~~~ 311 (813)
...+|.|.+-++ +.+..+|+.++..+-.++..-+ ...++.-++|.+-.+ ++..+..++.+++.++..+... -.+
T Consensus 388 ~~IlplL~~S~~--~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~-lD~ 462 (700)
T KOG2137|consen 388 EKILPLLYRSLE--DSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR-LDK 462 (700)
T ss_pred HHHHHHHHHHhc--CcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH-HHH
Confidence 356788888888 7889999999999988765433 334444556666555 3455788999999999888721 111
Q ss_pred HHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhc
Q 003530 312 VLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFT 369 (813)
Q Consensus 312 ~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~ 369 (813)
..+.+. +.++.+..+..++.+.....++..++.........+....++|.++.+...
T Consensus 463 ~~v~d~-~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~ 519 (700)
T KOG2137|consen 463 AAVLDE-LLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVA 519 (700)
T ss_pred HHhHHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhc
Confidence 222221 456666666678888888888888877755443344444567776666554
No 352
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=60.79 E-value=31 Score=31.38 Aligned_cols=70 Identities=13% Similarity=0.166 Sum_probs=54.1
Q ss_pred HHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcC-CCChHHHHHHHHHHhc
Q 003530 460 TISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISEN-VGISKEQAAAVGLLAE 530 (813)
Q Consensus 460 i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~-~~~~~~~~~a~~~L~~ 530 (813)
+..|..-|.++++.++..|+.+|-.+..+.+..+...+... ..+..|++++... ....+++..+..++.+
T Consensus 39 ~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~-~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~ 109 (133)
T cd03561 39 ARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADK-EFLLELVKIAKNSPKYDPKVREKALELILA 109 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhH-HHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 55667778889999999999999999988888888777775 6888899999874 2224677766666543
No 353
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=59.69 E-value=88 Score=30.16 Aligned_cols=112 Identities=16% Similarity=0.183 Sum_probs=66.6
Q ss_pred HHHHh-hccCchhHHHHHHHHHHhhhhcCcchhhHHHHHHhhcC------------------c-HHHHHHHhhcCChHHH
Q 003530 688 KLIAL-LDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQG------------------I-KPILDVLLEKRTENLQ 747 (813)
Q Consensus 688 ~Lv~l-L~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~~~~~------------------v-~~L~~ll~~~~~~~~~ 747 (813)
.|+.+ +.|+++.||.+|+.+|..|...... ....-.+.++ + ..|+..|+...+..+.
T Consensus 43 sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~---~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l 119 (182)
T PF13251_consen 43 SLLTCILKDPSPKVRAAAASALAALLEGSKP---FLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVL 119 (182)
T ss_pred chhHHHHcCCchhHHHHHHHHHHHHHHccHH---HHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 45544 4599999999999999999866432 1111111110 0 2355666433455555
Q ss_pred HHHHHHHHHHHcchhhhh-hhcCCCcchHHHHHHhhhcCchhHHHHHHHHHHhccc
Q 003530 748 RRAVWVVERILRTDDIAY-EVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKI 802 (813)
Q Consensus 748 ~~a~~aL~~i~~~~~~~~-~~~~~~~~~~~Lv~~l~~~~~~~~~~Aa~~L~~l~~~ 802 (813)
.....+|..+....-|.+ +-+--..++..+-.++.+.|.+++..+..++..|...
T Consensus 120 ~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 120 TQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 666666666665533322 1111112234555678899999999999888877654
No 354
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=58.82 E-value=7 Score=24.32 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHcchhhhhhhcCCCcchHHHHHHhhh
Q 003530 746 LQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQH 783 (813)
Q Consensus 746 ~~~~a~~aL~~i~~~~~~~~~~~~~~~~~~~Lv~~l~~ 783 (813)
+|..|+++|++|. +...+++|+++|++
T Consensus 1 VR~~Aa~aLg~ig-----------d~~ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALGQIG-----------DPRAIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHGGG------------SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC-----------CHHHHHHHHHHhcC
Confidence 5788999999883 34455788888764
No 355
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.68 E-value=2.5 Score=42.47 Aligned_cols=40 Identities=25% Similarity=0.484 Sum_probs=30.9
Q ss_pred ceecccccccCCCceecCCCchh-cHHHHHHHHHHhhhCCC-CCCCCCCCcCC
Q 003530 32 AFVCPLTKQVMRDPVTLENGQTF-EREAIEKWFKECRENGR-KPVCPLTQKEL 82 (813)
Q Consensus 32 ~~~Cpi~~~~m~dpv~~~~g~t~-~r~~i~~~~~~~~~~~~-~~~CP~t~~~l 82 (813)
+.+|-||.+.-+|=|.++|||.. |-.| |. -..||+|++.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~C-----------Gkrm~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKC-----------GKRMNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhh-----------ccccccCchHHHHH
Confidence 58899999999999999999974 3333 32 25799998743
No 356
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.61 E-value=9.5 Score=41.63 Aligned_cols=50 Identities=16% Similarity=0.229 Sum_probs=35.0
Q ss_pred ceeccccc-ccCCCc---eecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcC
Q 003530 32 AFVCPLTK-QVMRDP---VTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKE 81 (813)
Q Consensus 32 ~~~Cpi~~-~~m~dp---v~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~ 81 (813)
..+|+||. +.+... .+.-|||.||..|..+++......|....||.-+..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~ 199 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCE 199 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCC
Confidence 47899999 333221 246799999999999999964334444778876554
No 357
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=58.50 E-value=22 Score=32.69 Aligned_cols=43 Identities=28% Similarity=0.309 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHcchhhhhhhcCCCcchHHHHHHhhhcCchhHHHHHHHHHHhc
Q 003530 747 QRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHID 800 (813)
Q Consensus 747 ~~~a~~aL~~i~~~~~~~~~~~~~~~~~~~Lv~~l~~~~~~~~~~Aa~~L~~l~ 800 (813)
+.+|+.+|+.+. |+- . +.+||++|.+.|..+...|+.+|.+.-
T Consensus 80 ~~~Av~LLGtM~---------GGY-N-V~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 80 PAEAVELLGTML---------GGY-N-VQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp HHHHHHHHTTS----------SST-T-HHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred HHHHHHHHhhcc---------CCC-c-HHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 466677776663 332 2 479999999999999999999998754
No 358
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=58.47 E-value=35 Score=31.30 Aligned_cols=70 Identities=16% Similarity=0.284 Sum_probs=55.9
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-cchhhhhhcCCCHHHHHHHhcc------CcHHHHHHHHHHHHHhh
Q 003530 151 LIPMIIDMLKSSSRKVRCTALETLRIVVEED-DDNKEILGQGDTVRTIVKFLSH------ELSREREEAVSLLYELS 220 (813)
Q Consensus 151 ~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~~ls 220 (813)
++..|.+.|.++++.++..|+..|-.+.... ......|.+.+.+..|+++++. .+..++...+.++..-+
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 5667778889999999999999998887754 3577888888999999999963 45677777777776654
No 359
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=58.30 E-value=58 Score=37.75 Aligned_cols=133 Identities=18% Similarity=0.132 Sum_probs=88.5
Q ss_pred CCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccH
Q 003530 191 GDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNV 270 (813)
Q Consensus 191 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~ 270 (813)
...+|.|.+.+++.+..+|+.++..+-.++..-+. ..+ ..-.+|.|-.+.. ...+..++.+++.++..+. +..
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~--~~v-k~~ilP~l~~l~~-~tt~~~vkvn~L~c~~~l~---q~l 460 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESIDV--PFV-KQAILPRLKNLAF-KTTNLYVKVNVLPCLAGLI---QRL 460 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH--HHH-HHHHHHHhhcchh-cccchHHHHHHHHHHHHHH---HHH
Confidence 35678888888888999999999988888764431 111 2245666666633 3788899999999998886 222
Q ss_pred HHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchh-HHHHHhhhHHHHHHHHhcCC
Q 003530 271 RQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDV-KVLVARTVGSCLINIMKSGN 330 (813)
Q Consensus 271 ~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~-~~~i~~~gi~~Lv~lL~~~~ 330 (813)
....-..-+.++.+-.+..++.+......+..++...... ...+.+..+|.++-+...+.
T Consensus 461 D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 461 DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 2222223455666666677888888888888888775444 45666665677766665443
No 360
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=56.79 E-value=37 Score=38.90 Aligned_cols=119 Identities=16% Similarity=0.169 Sum_probs=80.5
Q ss_pred chHHHHHhhccCchhHHHHHHHHHHhhhhcCcchhhHHHHHHh--hcCcHHHHHHHh---hcCChHHHHHHHHHHHHHHc
Q 003530 685 AVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCE--AQGIKPILDVLL---EKRTENLQRRAVWVVERILR 759 (813)
Q Consensus 685 ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~~--~~~v~~L~~ll~---~~~~~~~~~~a~~aL~~i~~ 759 (813)
-...++.+|+++.--.|...+++++|++.+-.. .+ .+.+ -.-+..|+.++. ....+-.|.+|...+++||.
T Consensus 300 q~~~~~~LLdses~tlRc~~~EicaN~V~~~~~--d~--qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifd 375 (1128)
T COG5098 300 QYEHFDELLDSESFTLRCCFLEICANLVEHFKK--DG--QMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFD 375 (1128)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHhc--ch--hhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHh
Confidence 366899999999999999999999999854220 01 1111 112334444442 25678999999999999996
Q ss_pred chhhhhhhcCCCcchHHHHHHhhhcCchhHHHHHHHHHHhcccCCCCCCC
Q 003530 760 TDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKIPNFSGIF 809 (813)
Q Consensus 760 ~~~~~~~~~~~~~~~~~Lv~~l~~~~~~~~~~Aa~~L~~l~~~~~~s~~~ 809 (813)
.+-- ..+....+....+..+++.+..+|+.|...+..|-.-+-+++..
T Consensus 376 l~sk--~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF~~~h 423 (1128)
T COG5098 376 LNSK--TVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPFASEH 423 (1128)
T ss_pred Cccc--ccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCChhhhc
Confidence 5211 11111223456788999999999999999998776555555443
No 361
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=55.81 E-value=3.6e+02 Score=30.81 Aligned_cols=117 Identities=17% Similarity=0.133 Sum_probs=80.2
Q ss_pred hcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccCCHHHHHHHHH
Q 003530 220 SKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAA 299 (813)
Q Consensus 220 s~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~ 299 (813)
-.+++. ..++ .|.+..+++-+. +.+..++.+.+.+|.-++..-.-.....-.|.+..|.+.+-+..+.++..|+.
T Consensus 80 ~~dpeg-~~~V--~~~~~h~lRg~e--skdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~ 154 (885)
T COG5218 80 PDDPEG-EELV--AGTFYHLLRGTE--SKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVK 154 (885)
T ss_pred CCChhh-hHHH--HHHHHHHHhccc--CcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 334444 3443 478888888888 88999999999999888765555555566688999999988888999999999
Q ss_pred HHHHhcCCchhHHHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHhhCC
Q 003530 300 FLGDLALNSDVKVLVARTVGSCLINIMK-SGNMQAREAALKALNQISSC 347 (813)
Q Consensus 300 ~L~~L~~~~~~~~~i~~~gi~~Lv~lL~-~~~~~~~~~a~~aL~~Ls~~ 347 (813)
+|..+-....+-..-. ...|+.+++ +++.+++..| |.|+...
T Consensus 155 ~L~~~Qe~~~neen~~---~n~l~~~vqnDPS~EVRr~a---llni~vd 197 (885)
T COG5218 155 VLCYYQEMELNEENRI---VNLLKDIVQNDPSDEVRRLA---LLNISVD 197 (885)
T ss_pred HHHHHHhccCChHHHH---HHHHHHHHhcCcHHHHHHHH---HHHeeeC
Confidence 9988765332211111 235555564 3666777654 4555543
No 362
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=55.71 E-value=7.9 Score=33.15 Aligned_cols=51 Identities=22% Similarity=0.517 Sum_probs=30.1
Q ss_pred CCCceecccccccCCCceecCCC------chhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCC
Q 003530 29 IYDAFVCPLTKQVMRDPVTLENG------QTFEREAIEKWFKECRENGRKPVCPLTQKELRST 85 (813)
Q Consensus 29 ~~~~~~Cpi~~~~m~dpv~~~~g------~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~ 85 (813)
+.+.++||||+++-..=|-+... .-|+..++.+...+ | ..=|.+|+++...
T Consensus 37 ~ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~----~--~~HPLSREpit~s 93 (113)
T PF06416_consen 37 PEEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVRE----G--APHPLSREPITPS 93 (113)
T ss_dssp -CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHC----T-----TTT-----TT
T ss_pred CHHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHc----C--CCCCCccCCCChh
Confidence 34568999999999888875432 35999999999986 3 2349999887543
No 363
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=55.70 E-value=32 Score=31.57 Aligned_cols=68 Identities=18% Similarity=0.274 Sum_probs=51.2
Q ss_pred HHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcC----CCChHHHHHHHHHH
Q 003530 460 TISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISEN----VGISKEQAAAVGLL 528 (813)
Q Consensus 460 i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~----~~~~~~~~~a~~~L 528 (813)
+..|..-|.++++.++..|+.+|-.+..+.+..+...+... +.+..|++++... .....++...+.++
T Consensus 40 ~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~-~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li 111 (139)
T cd03567 40 VRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKF-RFLNELIKLVSPKYLGSRTSEKVKTKIIELL 111 (139)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhH-HHHHHHHHHhccccCCCCCCHHHHHHHHHHH
Confidence 55667778899999999999999999988888888888877 8999999999641 11135555554444
No 364
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=55.48 E-value=0.88 Score=35.51 Aligned_cols=41 Identities=20% Similarity=0.395 Sum_probs=22.3
Q ss_pred ceecccccccCCCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCC
Q 003530 32 AFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELR 83 (813)
Q Consensus 32 ~~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~ 83 (813)
+..||.|++.|. ...|+.+|-.|-..+.. ...||.|+++|.
T Consensus 1 e~~CP~C~~~L~----~~~~~~~C~~C~~~~~~-------~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELE----WQGGHYHCEACQKDYKK-------EAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEE----EETTEEEETTT--EEEE-------EEE-TTT-SB-E
T ss_pred CCcCCCCCCccE----EeCCEEECcccccccee-------cccCCCcccHHH
Confidence 368999998753 34478888887554433 268999998764
No 365
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=55.34 E-value=2.4e+02 Score=28.50 Aligned_cols=206 Identities=18% Similarity=0.126 Sum_probs=111.1
Q ss_pred hHHHHHHH-ccCCHHHHHHHHHHHHHhcCCc-hhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHH
Q 003530 279 LQPLLTQI-LEGPQETKLSLAAFLGDLALNS-DVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIH 356 (813)
Q Consensus 279 i~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~ 356 (813)
++.|+.-+ +..+++.+.....+|..++.++ .+...+ +..|..+...+......-+.+.+..+-.... +..
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v----~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPV----LQTLVSLVEQGSLELRYVALRLLTLLWKAND-RHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHH----HHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hHH---
Confidence 44555533 4558889999999999999876 433222 3556666666666665555666655554321 111
Q ss_pred cCChHHHHHH--Hh---ccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhh-cCCChHHH
Q 003530 357 AGILPPLVKD--LF---TVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLI-SNTGPTIE 430 (813)
Q Consensus 357 ~g~i~~Lv~l--L~---~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL-~~~~~~~~ 430 (813)
+.+..++.. ++ .....+...+.....+..+..+|...++. -...++.+..+| ...++..+
T Consensus 74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~-------------g~~ll~~ls~~L~~~~~~~~~ 139 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH-------------GVDLLPLLSGCLNQSCDEVAQ 139 (234)
T ss_pred -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh-------------HHHHHHHHHHHHhccccHHHH
Confidence 223333333 11 11111223334444456777777766541 146788888899 68888999
Q ss_pred HHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCC-hHHHHHHHHHHHHhCCC-CCHHHHHHHhcccccHHHHH
Q 003530 431 CKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQ-NDLRLASIELIQNLSPH-MGHELADALRGAVGQLGSLI 508 (813)
Q Consensus 431 ~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~~L~~Ls~~-~~~~~~~~l~~~~g~i~~Lv 508 (813)
..++.+|..+|...- -+... .-..+.+-+..+. +.+...-+.++..+... ...+-.+.+.. ..+..++
T Consensus 140 alale~l~~Lc~~~v--vd~~s------~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~--~~l~~lW 209 (234)
T PF12530_consen 140 ALALEALAPLCEAEV--VDFYS------AWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKR--QILQLLW 209 (234)
T ss_pred HHHHHHHHHHHHHhh--ccHHH------HHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHH--HHHHHHH
Confidence 999999999995421 11211 1223333333332 34444444444444321 12221222332 4677777
Q ss_pred HhhhcCCC
Q 003530 509 RVISENVG 516 (813)
Q Consensus 509 ~ll~~~~~ 516 (813)
++..+.+.
T Consensus 210 ~~~~~~~~ 217 (234)
T PF12530_consen 210 EYTSSSDV 217 (234)
T ss_pred hhcccccc
Confidence 77776663
No 366
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=54.83 E-value=5.8 Score=41.28 Aligned_cols=26 Identities=19% Similarity=0.496 Sum_probs=20.2
Q ss_pred ceecccccccCC---CceecCCCchhcHH
Q 003530 32 AFVCPLTKQVMR---DPVTLENGQTFERE 57 (813)
Q Consensus 32 ~~~Cpi~~~~m~---dpv~~~~g~t~~r~ 57 (813)
.|.||+|++.|. ....-++||+|+..
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~a 30 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDCA 30 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCccc
Confidence 389999999995 33456778999886
No 367
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=54.37 E-value=35 Score=30.99 Aligned_cols=71 Identities=14% Similarity=0.208 Sum_probs=55.9
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-cchhhhhhcCCCHHHHHHHhccCcH-H-HHHHHHHHHHHhhc
Q 003530 151 LIPMIIDMLKSSSRKVRCTALETLRIVVEED-DDNKEILGQGDTVRTIVKFLSHELS-R-EREEAVSLLYELSK 221 (813)
Q Consensus 151 ~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~-~-~~~~a~~~L~~ls~ 221 (813)
++..|.+.|.++++.++..|+..|-.+.... ......+...+.+..|+++++.... . ++..++.++...+.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 5666778889999999999999999998874 4577788888899999999876543 2 67777777766654
No 368
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=53.45 E-value=6.7 Score=31.40 Aligned_cols=47 Identities=23% Similarity=0.358 Sum_probs=32.2
Q ss_pred CCCCchhhhhcccCCCCCceecccccccCCCceecCCCchhcHHHHHHHHHH
Q 003530 14 QSDGSYHFERLHIEPIYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKE 65 (813)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~ 65 (813)
-.+|+..+++|... ...+||+|++.+..-- +-.++.. |..|++|+.+
T Consensus 24 ~tyer~~I~~~l~~---~~~~~P~t~~~l~~~~-l~pn~~L-k~~I~~~~~~ 70 (73)
T PF04564_consen 24 HTYERSAIERWLEQ---NGGTDPFTRQPLSESD-LIPNRAL-KSAIEEWCAE 70 (73)
T ss_dssp EEEEHHHHHHHHCT---TSSB-TTT-SB-SGGG-SEE-HHH-HHHHHHHHHH
T ss_pred CEEcHHHHHHHHHc---CCCCCCCCCCcCCccc-ceECHHH-HHHHHHHHHH
Confidence 67799999998433 4589999998876533 4445555 8899999987
No 369
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.32 E-value=1.1e+02 Score=31.94 Aligned_cols=133 Identities=17% Similarity=0.117 Sum_probs=72.7
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhcCc-hhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHH
Q 003530 197 IVKFLSHELSREREEAVSLLYELSKSE-ALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAE 275 (813)
Q Consensus 197 Lv~lL~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~ 275 (813)
.++.|++.+-.....++..+..|+... +...... ...|..+++-++ +....+...|+.++..+.....+...-
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L--~~vii~vvkslK--NlRS~VsraA~~t~~difs~ln~~i~~-- 166 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML--HEVIIAVVKSLK--NLRSAVSRAACMTLADIFSSLNNSIDQ-- 166 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 344455555555555666666665433 2222222 356778888888 677788889999998885543332211
Q ss_pred cCChHHHH-HHHccC---CHHHHHHHHHHHHHhcCCchhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 003530 276 NGRLQPLL-TQILEG---PQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALN 342 (813)
Q Consensus 276 ~G~i~~Lv-~lL~~~---~~~~~~~a~~~L~~L~~~~~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~ 342 (813)
..+.++ .+|... +.-+++.+-.+|..+..+-.-.. .++.|+-.+...++.++..++.+..
T Consensus 167 --~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~-----~L~~L~~~~~~~n~r~r~~a~~~~~ 230 (334)
T KOG2933|consen 167 --ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK-----LLRKLIPILQHSNPRVRAKAALCFS 230 (334)
T ss_pred --HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH-----HHHHHHHHHhhhchhhhhhhhcccc
Confidence 122332 333333 44567777777777643221110 1345555566666666666555443
No 370
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=53.05 E-value=4e+02 Score=30.48 Aligned_cols=104 Identities=15% Similarity=0.120 Sum_probs=65.4
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHHHhcCCc-hhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhC---CcccHH
Q 003530 277 GRLQPLLTQILEGPQETKLSLAAFLGDLALNS-DVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISS---CEPSAK 352 (813)
Q Consensus 277 G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~---~~~~~~ 352 (813)
|.+..++.-+.+.+..++..++.+|..+..+- +.-..+...-+..|.+-+-+..+.++..|+.+|..+-. +++|+
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~- 169 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR- 169 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH-
Confidence 55556666667778899999998888876432 22222222224666666666778889999999977654 33443
Q ss_pred HHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q 003530 353 VLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSG 394 (813)
Q Consensus 353 ~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~ 394 (813)
.+..|+.+++. +++.+++..| |.|+.-.+
T Consensus 170 ------~~n~l~~~vqn----DPS~EVRr~a---llni~vdn 198 (885)
T COG5218 170 ------IVNLLKDIVQN----DPSDEVRRLA---LLNISVDN 198 (885)
T ss_pred ------HHHHHHHHHhc----CcHHHHHHHH---HHHeeeCC
Confidence 23467777775 4567777654 44554433
No 371
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=52.72 E-value=2e+02 Score=33.46 Aligned_cols=148 Identities=9% Similarity=0.088 Sum_probs=88.1
Q ss_pred cccCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhH
Q 003530 147 HNSELIPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALC 226 (813)
Q Consensus 147 ~~~g~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~ 226 (813)
.+.+.+|.|++++++.|..+|..-+.-+-.... .-...+.+...+|.+..-+.+.++..|+.++..+..|+..-..+
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~---~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID---HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhh---hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 345678999999998888888766655554433 33455667778888888888888888988888887776432222
Q ss_pred hHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcC-ChHHHHHHHccCCHHHHHHHHHHHHHhc
Q 003530 227 EKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENG-RLQPLLTQILEGPQETKLSLAAFLGDLA 305 (813)
Q Consensus 227 ~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G-~i~~Lv~lL~~~~~~~~~~a~~~L~~L~ 305 (813)
.+. ...+..+-++-. +++..++.+...+|..++.+..- .++.+ .+-++..-|+++-...|..+...+....
T Consensus 404 -~Ln--~Ellr~~ar~q~--d~~~~irtntticlgki~~~l~~---~~R~~vL~~aftralkdpf~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 404 -NLN--GELLRYLARLQP--DEHGGIRTNTTICLGKIAPHLAA---SVRKRVLASAFTRALKDPFVPARKAGVLALAATQ 475 (690)
T ss_pred -hhc--HHHHHHHHhhCc--cccCcccccceeeecccccccch---hhhccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence 221 123333333333 55666777777777666443211 11222 2334444556655555555555554443
No 372
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=52.35 E-value=36 Score=31.25 Aligned_cols=71 Identities=18% Similarity=0.225 Sum_probs=56.3
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-cchhhhhhcCCCHHHHHHHhccCcH-H---HHHHHHHHHHHhhc
Q 003530 151 LIPMIIDMLKSSSRKVRCTALETLRIVVEED-DDNKEILGQGDTVRTIVKFLSHELS-R---EREEAVSLLYELSK 221 (813)
Q Consensus 151 ~i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~-~---~~~~a~~~L~~ls~ 221 (813)
++..|.+.|.++++.++..|+..|-.+.... +..+..+.....+..|++++.+... . +++.+..+|...+.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 5677778889999999999999999998875 5678888888899999998875432 2 67777777766653
No 373
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=50.95 E-value=5.3 Score=36.70 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=17.6
Q ss_pred CceecccccccCCCceecCCC
Q 003530 31 DAFVCPLTKQVMRDPVTLENG 51 (813)
Q Consensus 31 ~~~~Cpi~~~~m~dpv~~~~g 51 (813)
++.+||||++.-.+.|+|-|.
T Consensus 1 ed~~CpICme~PHNAVLLlCS 21 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCS 21 (162)
T ss_pred CCccCceeccCCCceEEEEec
Confidence 357999999999999997553
No 374
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=50.46 E-value=21 Score=32.94 Aligned_cols=48 Identities=17% Similarity=0.278 Sum_probs=33.3
Q ss_pred CceecccccccCCCceecCCCc-----hhcHHHHHHHHHHhhhCCCCCCCCCCCcCCC
Q 003530 31 DAFVCPLTKQVMRDPVTLENGQ-----TFEREAIEKWFKECRENGRKPVCPLTQKELR 83 (813)
Q Consensus 31 ~~~~Cpi~~~~m~dpv~~~~g~-----t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~ 83 (813)
.+..|=||.+--. +..-||.. ..=++|+++|+.. ++. ..||.|+.++.
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~---s~~-~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINT---SKN-KSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhc---CCC-CcccccCCeEE
Confidence 3467888877643 33446642 2358999999997 454 88999998763
No 375
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=50.19 E-value=2.8e+02 Score=27.91 Aligned_cols=138 Identities=15% Similarity=0.110 Sum_probs=79.2
Q ss_pred HHHHHhcccCCCCHHHHHHHHHHHHhhccCC-ccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhHHHHH
Q 003530 237 LILVGMTSSKSENLLTVEKAEKTLANLEKCE-NNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVA 315 (813)
Q Consensus 237 ~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~ 315 (813)
+.|+.-+.. ..+++.+.....+|..++.++ .+...+. ..|..+...+..+.+.-+.+.+..+-..++ +..
T Consensus 3 ~~L~~~l~~-~~~~~~~~~~L~~L~~l~~~~~~~~~~v~-----~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~f-- 73 (234)
T PF12530_consen 3 PLLLYKLGK-ISDPELQLPLLEALPSLACHKNVCVPPVL-----QTLVSLVEQGSLELRYVALRLLTLLWKAND-RHF-- 73 (234)
T ss_pred HHHHHHhcC-CCChHHHHHHHHHHHHHhccCccchhHHH-----HHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hHH--
Confidence 444442332 678899999999999998777 5544443 355555566655554444455555433221 111
Q ss_pred hhhHHHHHHH--Hh------cC--CHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHH
Q 003530 316 RTVGSCLINI--MK------SG--NMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSAT 385 (813)
Q Consensus 316 ~~gi~~Lv~l--L~------~~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~ 385 (813)
..+..++.. ++ ++ ..+.....+.++..+|...+++ -...++.+..+|.. +.++..+..++.
T Consensus 74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~----g~~ll~~ls~~L~~----~~~~~~~alale 144 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH----GVDLLPLLSGCLNQ----SCDEVAQALALE 144 (234)
T ss_pred -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh----HHHHHHHHHHHHhc----cccHHHHHHHHH
Confidence 113333333 11 11 2234455567888888854431 12257778888841 124788999999
Q ss_pred HHHHHHh
Q 003530 386 ILANVVN 392 (813)
Q Consensus 386 ~L~nL~~ 392 (813)
.|..|+.
T Consensus 145 ~l~~Lc~ 151 (234)
T PF12530_consen 145 ALAPLCE 151 (234)
T ss_pred HHHHHHH
Confidence 9999984
No 376
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=49.26 E-value=4.2e+02 Score=29.66 Aligned_cols=236 Identities=16% Similarity=0.150 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHhhccC-cchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHh
Q 003530 164 RKVRCTALETLRIVVEED-DDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGM 242 (813)
Q Consensus 164 ~~~~~~al~~L~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~l 242 (813)
...|..|+.+|+.++..= +..-..+. -+.|+..|++.....|.-|+.+|.+-+.....+..-.......+.|..+
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~----~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIF----QPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHH----HHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 356788889998886642 12211121 1258899999988889999999988877553322211012345667777
Q ss_pred cccCCCCHHHHHHHHHHHHhh-ccCCccHHHHHHcCChH-----HHHHHHc---cC-----CHHHHHHHHH-HHHHhc--
Q 003530 243 TSSKSENLLTVEKAEKTLANL-EKCENNVRQMAENGRLQ-----PLLTQIL---EG-----PQETKLSLAA-FLGDLA-- 305 (813)
Q Consensus 243 L~~~s~~~~~~~~a~~~L~~L-~~~~~~~~~i~~~G~i~-----~Lv~lL~---~~-----~~~~~~~a~~-~L~~L~-- 305 (813)
|.+ +.+..-...+..+..+ .....-...+.+.|.++ .|-...+ .. +.+..+..+. ....+.
T Consensus 177 L~~--~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~ 254 (441)
T PF12054_consen 177 LEN--PEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKS 254 (441)
T ss_pred HcC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHh
Confidence 762 2221111112222222 11111122334445422 1111111 00 1111112111 111111
Q ss_pred --CCchh--HHHHHhh--hHHHHHHHHh----cCCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCCCC
Q 003530 306 --LNSDV--KVLVART--VGSCLINIMK----SGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHL 375 (813)
Q Consensus 306 --~~~~~--~~~i~~~--gi~~Lv~lL~----~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~ 375 (813)
..... .+.+.+. .+...++..+ .-+..++...++|+..+..-|+--. -+|.+|++-++.. .
T Consensus 255 l~~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~KLn-----PiIrpLMdSIK~E----e 325 (441)
T PF12054_consen 255 LSPSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKKLN-----PIIRPLMDSIKRE----E 325 (441)
T ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcc-----HHHHHHHHHhhcc----c
Confidence 11111 1222221 1222222222 1245667778888887766543211 2577888888874 3
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhc
Q 003530 376 PMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS 423 (813)
Q Consensus 376 ~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~ 423 (813)
+..++..++..|+.|......+.. --...+|..|+.+|-
T Consensus 326 n~~LQ~rsA~slA~Li~~~~~rkp---------~PndKIvkNLc~flC 364 (441)
T PF12054_consen 326 NELLQQRSAESLARLIQLCVDRKP---------CPNDKIVKNLCTFLC 364 (441)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCC---------CCcHHHHHHHhhhhc
Confidence 688999999998888664432222 122445666666553
No 377
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=49.23 E-value=6.3 Score=28.03 Aligned_cols=31 Identities=13% Similarity=0.223 Sum_probs=21.0
Q ss_pred cCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCC
Q 003530 48 LENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRS 84 (813)
Q Consensus 48 ~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~ 84 (813)
-.+.|..|..|+...+.. ...||+|+++++.
T Consensus 17 ~C~dHYLCl~CLt~ml~~------s~~C~iC~~~LPt 47 (50)
T PF03854_consen 17 KCSDHYLCLNCLTLMLSR------SDRCPICGKPLPT 47 (50)
T ss_dssp E-SS-EEEHHHHHHT-SS------SSEETTTTEE---
T ss_pred eecchhHHHHHHHHHhcc------ccCCCcccCcCcc
Confidence 355699999999998864 4789999998753
No 378
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.03 E-value=1.2e+02 Score=31.59 Aligned_cols=136 Identities=16% Similarity=0.172 Sum_probs=79.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcC-CchhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHHcCCh
Q 003530 282 LLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGIL 360 (813)
Q Consensus 282 Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i 360 (813)
.+..|.+.+-+.+..+...|..|+. +.+.-..+-..-+..+++-+++....+-..|+.++..|...-.+. +.+ ..
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~--i~~--~l 168 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS--IDQ--EL 168 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH--HHH--HH
Confidence 3444555555666666666666655 233322233333566777777777778888888888876632211 111 23
Q ss_pred HHHHHHH-hccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHH
Q 003530 361 PPLVKDL-FTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLV 438 (813)
Q Consensus 361 ~~Lv~lL-~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~ 438 (813)
..++..| ...+ ....-+++.|..+|..+..+.. -..+++.|.-.++..++.++..++.++.
T Consensus 169 d~lv~~Ll~ka~--~dnrFvreda~kAL~aMV~~vt---------------p~~~L~~L~~~~~~~n~r~r~~a~~~~~ 230 (334)
T KOG2933|consen 169 DDLVTQLLHKAS--QDNRFVREDAEKALVAMVNHVT---------------PQKLLRKLIPILQHSNPRVRAKAALCFS 230 (334)
T ss_pred HHHHHHHHhhhc--ccchHHHHHHHHHHHHHHhccC---------------hHHHHHHHHHHHhhhchhhhhhhhcccc
Confidence 3344333 3322 2246788999999988766422 2355777777788888888877665443
No 379
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=48.67 E-value=46 Score=29.38 Aligned_cols=31 Identities=29% Similarity=0.403 Sum_probs=28.8
Q ss_pred chHHHHHhhccCchhHHHHHHHHHHhhhhcC
Q 003530 685 AVEKLIALLDHTNEKVVEASLAALSTVIDDG 715 (813)
Q Consensus 685 ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~ 715 (813)
+|+.||+-|.+++++|+..|...|.....++
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch
Confidence 7899999999999999999999999888776
No 380
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=48.67 E-value=3.1e+02 Score=27.94 Aligned_cols=89 Identities=16% Similarity=0.151 Sum_probs=50.7
Q ss_pred cCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHHhh-hhchHHHHHHhcccCCCCHHHHHHHHHHHHhhcc-CC
Q 003530 190 QGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIGS-INGAILILVGMTSSKSENLLTVEKAEKTLANLEK-CE 267 (813)
Q Consensus 190 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~-~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~-~~ 267 (813)
+..+.|+++++++.++...- ..+..... .+....+.. -.|-+..|-+++.++.-+.=++..|..+|..+.. .+
T Consensus 71 e~~A~~~li~l~~~~~~~~~----~l~GD~~t-E~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~ 145 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDFLE----DLFGDFIT-EDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGP 145 (249)
T ss_pred hhhhHHHHHHHHcCCcchHH----HHHcchhH-hHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCC
Confidence 45689999999976653210 00111000 111111111 2467888999988655566788888999988854 45
Q ss_pred ccHHHHHHcCChHHHHHH
Q 003530 268 NNVRQMAENGRLQPLLTQ 285 (813)
Q Consensus 268 ~~~~~i~~~G~i~~Lv~l 285 (813)
..|..+++ .+..++..
T Consensus 146 ~~Re~vi~--~f~~ll~~ 161 (249)
T PF06685_consen 146 ISREEVIQ--YFRELLNY 161 (249)
T ss_pred CCHHHHHH--HHHHHHHH
Confidence 55666655 34444433
No 381
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=48.50 E-value=4e+02 Score=29.08 Aligned_cols=170 Identities=13% Similarity=0.135 Sum_probs=82.9
Q ss_pred HHHhcCCchhHHHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHhhCCc-ccHHHHHHcCChHHHHHHHhccCCCCCChh
Q 003530 301 LGDLALNSDVKVLVARTVGSCLINIMK-SGNMQAREAALKALNQISSCE-PSAKVLIHAGILPPLVKDLFTVGSNHLPMR 378 (813)
Q Consensus 301 L~~L~~~~~~~~~i~~~gi~~Lv~lL~-~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~ 378 (813)
+-+|+..++.-+...+.-..-+-+-+. +....-+.+|...|..|+..- +....++ .+.+..++.-....+ ..+..
T Consensus 194 ~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~-~~~i~~~l~~y~~~~--~~~w~ 270 (370)
T PF08506_consen 194 FPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL-MQYIQQLLQQYASNP--SNNWR 270 (370)
T ss_dssp HHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-T--TT-HH
T ss_pred cCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhhCC--cccHH
Confidence 445555554444444432222222232 223345788899999998642 1111111 112222222222222 22467
Q ss_pred HHHHHHHHHHHHHhcCCCCcccccCC-CC----ccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHH
Q 003530 379 LKEVSATILANVVNSGHDFDSITVGP-DN----QTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSA 453 (813)
Q Consensus 379 ~~~~a~~~L~nL~~~~~~~~~~~~~~-~~----~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 453 (813)
-|..|+..+..|+........ .+.. +. ..+....++|-|- -=.+..|-++..|++.+...-..-. .+...
T Consensus 271 ~KD~Al~Li~ala~k~~t~~~-Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~--~~~l~- 345 (370)
T PF08506_consen 271 SKDGALYLIGALASKGSTTKS-GVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP--KEQLL- 345 (370)
T ss_dssp HHHHHHHHHHHHHBSS--BTT-B-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS---HHHHH-
T ss_pred HHHHHHHHHHHHHhhhccccC-CcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC--HHHHH-
Confidence 788899999888876543211 0000 00 0111222233332 1114578889999999887766522 12222
Q ss_pred HHhcCCHHHHHHhhhCCChHHHHHHHHHH
Q 003530 454 IKSSGATISLVQFVEAPQNDLRLASIELI 482 (813)
Q Consensus 454 i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L 482 (813)
+.++.++.+|.+++.-|...|+.++
T Consensus 346 ----~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 346 ----QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp ----HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred ----HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 3489999999999998887777653
No 382
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=48.26 E-value=14 Score=27.78 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=20.8
Q ss_pred CCceecccccccCCCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCC
Q 003530 30 YDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQ 79 (813)
Q Consensus 30 ~~~~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~ 79 (813)
...|.||-|++. ++.-| ..||. .++.++||.|+
T Consensus 23 ~~~F~CPnCG~~----~I~RC--~~CRk-----------~~~~Y~CP~CG 55 (59)
T PRK14890 23 AVKFLCPNCGEV----IIYRC--EKCRK-----------QSNPYTCPKCG 55 (59)
T ss_pred cCEeeCCCCCCe----eEeec--hhHHh-----------cCCceECCCCC
Confidence 356999999874 12223 23343 35568999997
No 383
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=48.25 E-value=7 Score=38.71 Aligned_cols=49 Identities=29% Similarity=0.470 Sum_probs=32.2
Q ss_pred CCce-ecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCcccHhhHHHHHHHH
Q 003530 43 RDPV-TLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNPSIALRNTIEEWN 101 (813)
Q Consensus 43 ~dpv-~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~~l~pn~~l~~~I~~~~ 101 (813)
.||. ++.|+|.||-.|...- ++..||.|+.++..-.+.+| |-..|..++
T Consensus 15 ~~~f~LTaC~HvfC~~C~k~~--------~~~~C~lCkk~ir~i~l~~s--lp~~ik~~F 64 (233)
T KOG4739|consen 15 QDPFFLTACRHVFCEPCLKAS--------SPDVCPLCKKSIRIIQLNRS--LPTDIKSYF 64 (233)
T ss_pred CCceeeeechhhhhhhhcccC--------Cccccccccceeeeeecccc--cchhHHHHc
Confidence 5664 5899999998884322 22489999998655555444 444455544
No 384
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.07 E-value=11 Score=44.06 Aligned_cols=45 Identities=16% Similarity=0.423 Sum_probs=36.7
Q ss_pred CCCCCceecccccccCCCcee-cCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCc
Q 003530 27 EPIYDAFVCPLTKQVMRDPVT-LENGQTFEREAIEKWFKECRENGRKPVCPLTQK 80 (813)
Q Consensus 27 ~~~~~~~~Cpi~~~~m~dpv~-~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~ 80 (813)
..+.+.-.|..|.-.+.=|++ --|||+|-+.|.+ . +. ..||.|..
T Consensus 835 a~i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~----~~-~~CP~C~~ 880 (933)
T KOG2114|consen 835 AQIFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----D----KE-DKCPKCLP 880 (933)
T ss_pred cceeeeeeecccCCccccceeeeecccHHHHHhhc----c----Cc-ccCCccch
Confidence 344455799999999999988 7999999999987 2 33 78999965
No 385
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=48.07 E-value=37 Score=31.12 Aligned_cols=68 Identities=15% Similarity=0.248 Sum_probs=53.2
Q ss_pred HHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChH--HHHHHHHHH
Q 003530 460 TISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISK--EQAAAVGLL 528 (813)
Q Consensus 460 i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~--~~~~a~~~L 528 (813)
+..|..-|.++++.++..|+.+|-.+..+.+..+...+... ..+..|++++.+...... ++..+..+|
T Consensus 44 ~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~-~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll 113 (140)
T PF00790_consen 44 ARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASK-EFLDELVKLIKSKKTDPETPVKEKILELL 113 (140)
T ss_dssp HHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSH-HHHHHHHHHHHHTTTHHHSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHH-HHHHHHHHHHccCCCCchhHHHHHHHHHH
Confidence 45667778889999999999999999988888888888777 789999999887775112 566555554
No 386
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=47.46 E-value=36 Score=35.74 Aligned_cols=58 Identities=22% Similarity=0.336 Sum_probs=49.0
Q ss_pred hccchHHHHHhhccCchhHHHHHHHHHHhhhhcCcc-----------hhhHHHHHHhhcCcHHHHHHHh
Q 003530 682 EGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVD-----------IEQGVMVLCEAQGIKPILDVLL 739 (813)
Q Consensus 682 ~~gai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~-----------~~~~~~~i~~~~~v~~L~~ll~ 739 (813)
+..-|..|++-|++.+...|..|+.+|..++...-. ..+|+..+.++||+++|.++|+
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 455788999999999999999999999999876321 2468889999999999999995
No 387
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.00 E-value=5.8e+02 Score=30.58 Aligned_cols=185 Identities=17% Similarity=0.230 Sum_probs=88.5
Q ss_pred CCCCCCcccHhhHHHHHHHHHhhhhhhhhhHhhhccCCCCcccHHHHHHHHHHHhhcCCcccccccccCcHHHHHH-Hhc
Q 003530 82 LRSTDLNPSIALRNTIEEWNARNEAAQLDMARKSLNLGSSESDIMPALKYVQYFCQSSRSNKHVVHNSELIPMIID-MLK 160 (813)
Q Consensus 82 l~~~~l~pn~~l~~~I~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~l~~l~~~~~~~r~~i~~~g~i~~Lv~-lL~ 160 (813)
+++....||..+|..-++.++.++ ++-++..+..+........|.+-++.+|+.-+..- .|.+..-++ +|.
T Consensus 339 i~e~VvlpN~~lR~eDeElFED~p---leYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~v-----t~v~~~~v~~~l~ 410 (960)
T KOG1992|consen 339 ICEKVVLPNLILREEDEELFEDNP---LEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQV-----TGVFSSEVQRLLD 410 (960)
T ss_pred HHHhhcccccccchhhHHHhccCH---HHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchh-----HHHHHHHHHHHHH
Confidence 344556777777777777766654 22333444433333334456666788877653221 122222222 222
Q ss_pred ------CCCHHHHHHHHHHHHHhhccCcchhhhhhcC----CCHHHHH-----HHhc---cCcHHHHHHHHHHHHHhhcC
Q 003530 161 ------SSSRKVRCTALETLRIVVEEDDDNKEILGQG----DTVRTIV-----KFLS---HELSREREEAVSLLYELSKS 222 (813)
Q Consensus 161 ------s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~----g~i~~Lv-----~lL~---~~~~~~~~~a~~~L~~ls~~ 222 (813)
|.+-.-+..|+.....++......+.-+-.. +.+..+. .+++ ...+-.+..++..+... ++
T Consensus 411 ~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~F-R~ 489 (960)
T KOG1992|consen 411 QYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTF-RN 489 (960)
T ss_pred HhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeee-cc
Confidence 2333445555665566665433322222221 1111111 1122 11122222222221111 11
Q ss_pred chhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhcc-CCccHHHHHHcCChH
Q 003530 223 EALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEK-CENNVRQMAENGRLQ 280 (813)
Q Consensus 223 ~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~G~i~ 280 (813)
.-.++.+. ..+|.+++.|. ++...+..+|+.++..+-. .+.+...+..++-+.
T Consensus 490 ql~~~~lm---~~~p~li~~L~--a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~ia 543 (960)
T KOG1992|consen 490 QLGKEHLM---ALLPRLIRFLE--AESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIA 543 (960)
T ss_pred cCChHHHH---HHHHHHHHhcc--CcchHHHHHHHHHHHhccccccCccccccchhhcc
Confidence 12222322 47999999999 7888899999999987743 333344455444443
No 388
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=46.71 E-value=3.5e+02 Score=27.93 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=37.0
Q ss_pred ccHHHHHHHHHHHhhcCCcc----cccccccCcHH-HHHHHhc--CCCHHHHHHHHHHHHHhhc
Q 003530 123 SDIMPALKYVQYFCQSSRSN----KHVVHNSELIP-MIIDMLK--SSSRKVRCTALETLRIVVE 179 (813)
Q Consensus 123 ~~~~~al~~l~~l~~~~~~~----r~~i~~~g~i~-~Lv~lL~--s~~~~~~~~al~~L~~L~~ 179 (813)
+++.++|++|..+.+..+.. +..+.+.+.++ .|+.+|. .+++.+-..+++.|.+|..
T Consensus 9 ~dcl~~LkdL~r~lr~dd~~~~~v~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 9 DDCLECLKDLKRFLRRDDEDQRDVRRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTW 72 (266)
T ss_pred HhHHHHHHHHHHHHHHhCcchHHHHHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCC
Confidence 35666777777776655432 34445555554 4566653 3478888889999998865
No 389
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.09 E-value=4.7e+02 Score=30.68 Aligned_cols=183 Identities=10% Similarity=0.048 Sum_probs=101.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhcc-Ccc----hhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCc-h-hHh
Q 003530 155 IIDMLKSSSRKVRCTALETLRIVVEE-DDD----NKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSE-A-LCE 227 (813)
Q Consensus 155 Lv~lL~s~~~~~~~~al~~L~~L~~~-~~~----~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~-~-~~~ 227 (813)
|-+-|+..|..+|..|+..+.++--- +++ ....+.+ .-...+..+|+++-+.+|..|+.-++.....- + ...
T Consensus 179 l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~ 257 (1005)
T KOG1949|consen 179 LWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPP 257 (1005)
T ss_pred HHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCH
Confidence 33444668899999999999887432 222 1222332 23567889999999999999887776654311 0 111
Q ss_pred HHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 003530 228 KIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALN 307 (813)
Q Consensus 228 ~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 307 (813)
.|+. ..+..+++=+. ++...+++-.....|-.+..++.....+-. ++|.|=..|.+.++.++..+...|..+-.
T Consensus 258 ~i~~--~ll~kI~d~~a-~dt~s~VR~svf~gl~~~l~np~sh~~le~--~Lpal~~~l~D~se~VRvA~vd~ll~ik~- 331 (1005)
T KOG1949|consen 258 TILI--DLLKKITDELA-FDTSSDVRCSVFKGLPMILDNPLSHPLLEQ--LLPALRYSLHDNSEKVRVAFVDMLLKIKA- 331 (1005)
T ss_pred HHHH--HHHHHHHHHhh-hccchheehhHhcCcHHHHcCccchhHHHH--HHHhcchhhhccchhHHHHHHHHHHHHHh-
Confidence 1110 12222222222 134456666666666666666544333221 34555566778889999988888877622
Q ss_pred chhHHHHHhhh--HHHHHHHHhcCCHHHHHHHHHHHHHhhC
Q 003530 308 SDVKVLVARTV--GSCLINIMKSGNMQAREAALKALNQISS 346 (813)
Q Consensus 308 ~~~~~~i~~~g--i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~ 346 (813)
.|..=...- ...++..|..++..+.+.-+.-+.+.+.
T Consensus 332 --vra~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~l 370 (1005)
T KOG1949|consen 332 --VRAAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFL 370 (1005)
T ss_pred --hhhhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhhc
Confidence 111111111 2445555555555555555555555443
No 390
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=44.46 E-value=16 Score=38.98 Aligned_cols=41 Identities=24% Similarity=0.417 Sum_probs=28.0
Q ss_pred eecCCCchhcH-----HHHHHHHHHhhhCC-------CCCCCCCCCcCCCCCC
Q 003530 46 VTLENGQTFER-----EAIEKWFKECRENG-------RKPVCPLTQKELRSTD 86 (813)
Q Consensus 46 v~~~~g~t~~r-----~~i~~~~~~~~~~~-------~~~~CP~t~~~l~~~~ 86 (813)
..-+|+.-||| +|+.+||..-+++. .+-+||.|+..++-.|
T Consensus 302 ~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 302 NEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred cCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 34577777866 78999998633221 1378999998876443
No 391
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=44.42 E-value=18 Score=33.20 Aligned_cols=28 Identities=29% Similarity=0.291 Sum_probs=19.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhC
Q 003530 319 GSCLINIMKSGNMQAREAALKALNQISS 346 (813)
Q Consensus 319 i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~ 346 (813)
|.+|+++|.+.+..+...|+.+|.+--.
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 7899999987788888888888877544
No 392
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=44.19 E-value=5.9e+02 Score=29.87 Aligned_cols=222 Identities=13% Similarity=0.094 Sum_probs=117.4
Q ss_pred hhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhcc
Q 003530 186 EILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEK 265 (813)
Q Consensus 186 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~ 265 (813)
+.+...-.+|.|+..+..++ .-...+..+..+.+.-+..+ + ..+.+|.|++|++ +.|..++-. .|.++-.
T Consensus 287 e~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e-y--q~~i~p~l~kLF~--~~Dr~iR~~---LL~~i~~ 356 (690)
T KOG1243|consen 287 EEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE-Y--QVRIIPVLLKLFK--SPDRQIRLL---LLQYIEK 356 (690)
T ss_pred HHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc-c--ccchhhhHHHHhc--CcchHHHHH---HHHhHHH
Confidence 34444555666666666655 11222333333333322222 2 2478999999999 777766654 4444433
Q ss_pred CCc-cHHHHHHcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 003530 266 CEN-NVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQI 344 (813)
Q Consensus 266 ~~~-~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~L 344 (813)
+.+ --..+++.-.+|.+..-+.+.++.+++..+..+..|+..=..+ .+...-+..|-++-.+....++....-+|..+
T Consensus 357 ~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~-~Ln~Ellr~~ar~q~d~~~~irtntticlgki 435 (690)
T KOG1243|consen 357 YIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR-NLNGELLRYLARLQPDEHGGIRTNTTICLGKI 435 (690)
T ss_pred HhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh-hhcHHHHHHHHhhCccccCcccccceeeeccc
Confidence 322 2356777788999999999999999999988888876421111 01000012222222223445677777777777
Q ss_pred hCCcccHHHHHHcCCh-HHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhc
Q 003530 345 SSCEPSAKVLIHAGIL-PPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS 423 (813)
Q Consensus 345 s~~~~~~~~i~~~g~i-~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~ 423 (813)
+.+-... ++.+++ -+..+.+++ +-...+..+..+|+.....-+.. -....++|.++-+.-
T Consensus 436 ~~~l~~~---~R~~vL~~aftralkd-----pf~paR~a~v~~l~at~~~~~~~-----------~va~kIlp~l~pl~v 496 (690)
T KOG1243|consen 436 APHLAAS---VRKRVLASAFTRALKD-----PFVPARKAGVLALAATQEYFDQS-----------EVANKILPSLVPLTV 496 (690)
T ss_pred ccccchh---hhccccchhhhhhhcC-----CCCCchhhhhHHHhhcccccchh-----------hhhhhcccccccccc
Confidence 6642111 122322 233444443 23555666666665433221110 112345566666666
Q ss_pred CCChHHHHHHHHHH
Q 003530 424 NTGPTIECKLLQVL 437 (813)
Q Consensus 424 ~~~~~~~~~a~~~L 437 (813)
+.+..++..+-.++
T Consensus 497 d~e~~vr~~a~~~i 510 (690)
T KOG1243|consen 497 DPEKTVRDTAEKAI 510 (690)
T ss_pred CcccchhhHHHHHH
Confidence 66666665555444
No 393
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=43.38 E-value=4e+02 Score=28.53 Aligned_cols=220 Identities=19% Similarity=0.173 Sum_probs=101.0
Q ss_pred ChHHHHHHHcc-CCHHHHHHHHHHHHHhcCCchhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHH-H
Q 003530 278 RLQPLLTQILE-GPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVL-I 355 (813)
Q Consensus 278 ~i~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i-~ 355 (813)
++..|+.++.. .++.....+..++..=...- ...+.+..+..+.+=|.+..+.+|..-...+..+.....+.... .
T Consensus 23 i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~--~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~ 100 (339)
T PF12074_consen 23 IVQGLSPLLSKESNEAALSALLSALFKHLFFL--SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKF 100 (339)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh--CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHH
Confidence 34455555544 46666666665555422100 00011112345555555555557777777777766522222211 1
Q ss_pred HcCChHHHHHHHhccCCCCCChhHH---HHHHHHHHHHHhcCCCC--------cccccCCCCccccchhhHHHHHHhhcC
Q 003530 356 HAGILPPLVKDLFTVGSNHLPMRLK---EVSATILANVVNSGHDF--------DSITVGPDNQTLVSEDIVHNLLHLISN 424 (813)
Q Consensus 356 ~~g~i~~Lv~lL~~~~~~~~~~~~~---~~a~~~L~nL~~~~~~~--------~~~~~~~~~~~l~~~~~v~~Lv~lL~~ 424 (813)
-...+|.|+..++....+ +.+..+ -.++.++..+....... ..+..+++...+.++.+... +
T Consensus 101 ~~~~~~~L~~~~~~~~~~-p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvysk----l-- 173 (339)
T PF12074_consen 101 AEPFLPKLLQSLKEASAN-PLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSK----L-- 173 (339)
T ss_pred HHHHHHHHHHHHHHHHhC-CCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhc----c--
Confidence 133678888888654321 111111 11222222211100000 00111112222332222221 1
Q ss_pred CChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCC--ChHHHHHHHHHHHHhCCCCCHHHHHHHhcccc
Q 003530 425 TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP--QNDLRLASIELIQNLSPHMGHELADALRGAVG 502 (813)
Q Consensus 425 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g 502 (813)
.+++.....+++|..+..+... ...... ...--+.++.++-++ ..++|+.|..++..+....+..+...
T Consensus 174 ~~~~d~~w~~~al~~~~~~~~~--~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~l~~~------ 244 (339)
T PF12074_consen 174 ASEEDLCWLLRALEALLSDHPS--ELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPELLSKS------ 244 (339)
T ss_pred CCHhHHHHHHHHHHHHHhcchh--hhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHHHHHH------
Confidence 4555556677777777655321 000000 011246788888888 78999999999988774444433333
Q ss_pred cHHHHHHhhhcCC
Q 003530 503 QLGSLIRVISENV 515 (813)
Q Consensus 503 ~i~~Lv~ll~~~~ 515 (813)
.+..+.+.+...+
T Consensus 245 li~~l~~~l~~~~ 257 (339)
T PF12074_consen 245 LISGLWKWLSSSE 257 (339)
T ss_pred HHHHHHHHHHhcc
Confidence 3344555554443
No 394
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=40.39 E-value=10 Score=32.84 Aligned_cols=32 Identities=16% Similarity=0.330 Sum_probs=25.6
Q ss_pred CCCceecccccccCCCcee--cCCCchhcHHHHH
Q 003530 29 IYDAFVCPLTKQVMRDPVT--LENGQTFEREAIE 60 (813)
Q Consensus 29 ~~~~~~Cpi~~~~m~dpv~--~~~g~t~~r~~i~ 60 (813)
+.++-.|++|++.+.+++. -||||.|-..|+.
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 3456789999999987754 6999999888864
No 395
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=40.20 E-value=21 Score=23.46 Aligned_cols=10 Identities=30% Similarity=0.544 Sum_probs=7.6
Q ss_pred CCCCCCCCcC
Q 003530 72 KPVCPLTQKE 81 (813)
Q Consensus 72 ~~~CP~t~~~ 81 (813)
+..||+|+..
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 4789999763
No 396
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=39.79 E-value=6e+02 Score=28.68 Aligned_cols=112 Identities=11% Similarity=0.172 Sum_probs=62.6
Q ss_pred HHHHHHHHhc--CCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccC-CCCCChhHHHHHHHHHHHHHhcCC
Q 003530 319 GSCLINIMKS--GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVG-SNHLPMRLKEVSATILANVVNSGH 395 (813)
Q Consensus 319 i~~Lv~lL~~--~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~~~~~~a~~~L~nL~~~~~ 395 (813)
++.++..|.+ +..+....+-.++.||+..+-... ++..|..+|...+ ....+..+.+-|+.+|..+.....
T Consensus 215 l~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~ 288 (464)
T PF11864_consen 215 LSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGHS------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSG 288 (464)
T ss_pred HHHHHHHHhhHhcccccchhHHHHHHHHHcCccHHH------HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccc
Confidence 3455555533 333667778889999987543222 4577888884322 122345666788888888776652
Q ss_pred CCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHHHcc
Q 003530 396 DFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLT 441 (813)
Q Consensus 396 ~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~ 441 (813)
......+ .+...-+++.|..-++..++.+-...+..+.++-
T Consensus 289 ~~~~~~l-----~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 289 EQGYPSL-----PFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred cCCccee-----cccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 2111000 0111236777777777666655555555554443
No 397
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=39.71 E-value=2.4e+02 Score=29.43 Aligned_cols=74 Identities=14% Similarity=0.258 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHH--HHHHcCChHHHHHHHhcc-------CCCCCChhHHHHHHHHHHH
Q 003530 319 GSCLINIMKSGNMQAREAALKALNQISSCEPSAK--VLIHAGILPPLVKDLFTV-------GSNHLPMRLKEVSATILAN 389 (813)
Q Consensus 319 i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~--~i~~~g~i~~Lv~lL~~~-------~~~~~~~~~~~~a~~~L~n 389 (813)
+|+++.++.+.++..|..++.+|..+..+-.... .+.+.|..+.+-+.+... ...+.+..+-..+-.+|..
T Consensus 121 iP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~ 200 (282)
T PF10521_consen 121 IPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLS 200 (282)
T ss_pred HhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHH
Confidence 5888888888888888888888888877433222 345566555444443321 1112234566666667766
Q ss_pred HHh
Q 003530 390 VVN 392 (813)
Q Consensus 390 L~~ 392 (813)
|+.
T Consensus 201 L~~ 203 (282)
T PF10521_consen 201 LLK 203 (282)
T ss_pred HHH
Confidence 655
No 398
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=39.59 E-value=1e+03 Score=31.27 Aligned_cols=62 Identities=21% Similarity=0.306 Sum_probs=38.7
Q ss_pred hhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCCCC
Q 003530 466 FVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERD 535 (813)
Q Consensus 466 lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~~~ 535 (813)
+++++++.++..+..+...+=...... .+. ..+..||..+.+++. ....+|+.+|..|...+
T Consensus 443 Ll~S~e~~v~~FG~~~Y~~lF~~fds~----~qq--eVv~~Lvthi~sg~~--~ev~~aL~vL~~L~~~~ 504 (1426)
T PF14631_consen 443 LLRSKEPSVREFGSHLYKYLFKEFDSY----CQQ--EVVGALVTHIGSGNS--QEVDAALDVLCELAEKN 504 (1426)
T ss_dssp HHTSSSHHHHHHHHHHHHHHHHSS-HH----HHH--HHHHHHHHHHHH--H--HHHHHHHHHHHHHHHH-
T ss_pred HHhCCCHHHHHHHHHHHHHHHhhccch----hHH--HHHHHHHHHHcCCcH--HHHHHHHHHHHHHHhcc
Confidence 778888888887776666554333221 122 367778888877764 55568888888887633
No 399
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.47 E-value=23 Score=37.19 Aligned_cols=65 Identities=12% Similarity=0.385 Sum_probs=55.6
Q ss_pred HHHHHHHHhhcCCcccccccccCcHHHHHHHh--cCCCHHHHHHHHHHHHHhhccCcchhhhhhcCC
Q 003530 128 ALKYVQYFCQSSRSNKHVVHNSELIPMIIDML--KSSSRKVRCTALETLRIVVEEDDDNKEILGQGD 192 (813)
Q Consensus 128 al~~l~~l~~~~~~~r~~i~~~g~i~~Lv~lL--~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g 192 (813)
..+.|..+|...+++...+.+.||++.++.-- .+.+|-+++..+.+++.|..++.+|++.|.+..
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~kme 442 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKME 442 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcCC
Confidence 35578899999999999999999999887754 466899999999999999999989998887643
No 400
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=39.28 E-value=6.1e+02 Score=28.63 Aligned_cols=230 Identities=15% Similarity=0.165 Sum_probs=121.1
Q ss_pred hchHHHHHHhcccCCCCHHHHHHHHHHHHhh--ccC---------CccHHHHHHcCChHHHHHHHc----cCCHHHHHHH
Q 003530 233 NGAILILVGMTSSKSENLLTVEKAEKTLANL--EKC---------ENNVRQMAENGRLQPLLTQIL----EGPQETKLSL 297 (813)
Q Consensus 233 ~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L--~~~---------~~~~~~i~~~G~i~~Lv~lL~----~~~~~~~~~a 297 (813)
+.+|..|..++.. ++.-.++.++++.|.+| +.- +.+-..+-+...|...++.+- .|++.+.-..
T Consensus 96 nevir~ltqvis~-sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~l 174 (589)
T PF11229_consen 96 NEVIRTLTQVISF-SGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSL 174 (589)
T ss_pred HHHHHHHHHHHcC-ccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHH
Confidence 4567777777774 78888999999999886 221 111122223334444455443 3333222222
Q ss_pred H-HHHHHhcCC-chhHHHHHhh-h-HHHHHHHHhcCCHHHHHHHHHHHHHhhCCcccHHHHHHcCChHHHHHHHhccCCC
Q 003530 298 A-AFLGDLALN-SDVKVLVART-V-GSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSN 373 (813)
Q Consensus 298 ~-~~L~~L~~~-~~~~~~i~~~-g-i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 373 (813)
+ -++.-++.. +..+-.=++- . +.+|+++ . -.++++..|+..-..=+.+.++...++..=..|+|+.-|..
T Consensus 175 vkvvl~~ia~vgeS~qyPPVNWaalLsPLMRl-n-fGeEvq~lCLeiAvtQaqSSqsAa~fLg~WlsPpli~sLs~---- 248 (589)
T PF11229_consen 175 VKVVLKPIATVGESYQYPPVNWAALLSPLMRL-N-FGEEVQQLCLEIAVTQAQSSQSAAMFLGSWLSPPLIHSLSV---- 248 (589)
T ss_pred HHHHHHHhhhcCCCCCCCCccHHHHhhHHHhc-c-ccHHHHHHHHHHHHHhccccccHHHHHHhhcCcchhhhhhH----
Confidence 1 122223221 1111101111 1 3566665 2 35778888876555555566788888887788888887753
Q ss_pred CCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHH-HHHHhhcC----CChHHHHHHHHHHHHcccCCCchH
Q 003530 374 HLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVH-NLLHLISN----TGPTIECKLLQVLVGLTSSPTTVL 448 (813)
Q Consensus 374 ~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~-~Lv~lL~~----~~~~~~~~a~~~L~~L~~~~~~~~ 448 (813)
..+..-..-+.-...+-.+.+ + ..+++ .+++.++. .++++-..++.-|..-.+.|....
T Consensus 249 ----~tk~~L~~Sl~~wmkhVsedq----------i--Q~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~P~~ 312 (589)
T PF11229_consen 249 ----NTKKYLFESLSLWMKHVSEDQ----------I--QAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKLPSPAQ 312 (589)
T ss_pred ----HHHHHHHHHHHHHHhhCCHHH----------H--HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCCChhh
Confidence 455555555554444433221 1 34444 33334442 456666666666655445555444
Q ss_pred HHHHHHHhcCCHHHHHHhhhCCC----hHHHHHHHHHHHHhCC
Q 003530 449 SVVSAIKSSGATISLVQFVEAPQ----NDLRLASIELIQNLSP 487 (813)
Q Consensus 449 ~~~~~i~~~g~i~~Lv~lL~~~~----~~v~~~A~~~L~~Ls~ 487 (813)
.....+ +.....+.++|-++- -+.-...+++|..|++
T Consensus 313 h~Ws~L--c~ttekIF~lLPn~i~~~eveLYi~vAkCLSEMtd 353 (589)
T PF11229_consen 313 HCWSLL--CETTEKIFDLLPNKIQRNEVELYIGVAKCLSEMTD 353 (589)
T ss_pred HHHHHH--HHHHHHHHHhCcccccHHHHHHHHHHHHHHhhcCH
Confidence 444433 345667777774431 2344556667776664
No 401
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=38.84 E-value=2e+02 Score=29.98 Aligned_cols=141 Identities=13% Similarity=0.151 Sum_probs=72.1
Q ss_pred ChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHH----HHHHhhc--------CCC
Q 003530 359 ILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVH----NLLHLIS--------NTG 426 (813)
Q Consensus 359 ~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~----~Lv~lL~--------~~~ 426 (813)
.+|+++.++.+. .+.+|..++.+|..+....+..... .+...|..+ .|..++. ..+
T Consensus 120 iiP~iL~llDD~-----~~~~K~~G~~lL~~ll~~~~~~~~~-------~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s 187 (282)
T PF10521_consen 120 IIPPILNLLDDY-----SPEIKIQGCQLLHHLLEKVPAAEWD-------ILRRTGLFSVFEDALFPCLYYLPPITPEDES 187 (282)
T ss_pred HHhhHHHHhcCC-----CHHHHHHHHHHHHHHHHhCChhhhH-------HHHHcChHHHHHHHHHHHhhcCCCCCCchhh
Confidence 689999999875 4899999999999998855433200 133333333 2233333 244
Q ss_pred hHHHHHHHHHHHHcccC-----CCchHHHHHHHHhcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhccc
Q 003530 427 PTIECKLLQVLVGLTSS-----PTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAV 501 (813)
Q Consensus 427 ~~~~~~a~~~L~~L~~~-----~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~ 501 (813)
..+...+..+|..|+.- ..........+...|.+..+...-+.+.++++...+..+..+....+-.....+.
T Consensus 188 ~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~--- 264 (282)
T PF10521_consen 188 LELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQ--- 264 (282)
T ss_pred HHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHH---
Confidence 56667777777777431 1111122222322333333322222234566555555555444333444333333
Q ss_pred ccHHHHHHhhhcC
Q 003530 502 GQLGSLIRVISEN 514 (813)
Q Consensus 502 g~i~~Lv~ll~~~ 514 (813)
..++.|.+.+.++
T Consensus 265 rii~~l~~~l~np 277 (282)
T PF10521_consen 265 RIIPVLSQILENP 277 (282)
T ss_pred HHHHHHHHHhcCC
Confidence 2344455554444
No 402
>PHA02862 5L protein; Provisional
Probab=38.24 E-value=24 Score=31.94 Aligned_cols=45 Identities=16% Similarity=0.346 Sum_probs=30.3
Q ss_pred ecccccccCCCceecCCCc-----hhcHHHHHHHHHHhhhCCCCCCCCCCCcCCC
Q 003530 34 VCPLTKQVMRDPVTLENGQ-----TFEREAIEKWFKECRENGRKPVCPLTQKELR 83 (813)
Q Consensus 34 ~Cpi~~~~m~dpv~~~~g~-----t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~ 83 (813)
.|=||.+-=.+. .-||+. -.-++|+++|++. ++ +.+||.|+.++.
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~---S~-k~~CeLCkteY~ 53 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINY---SK-KKECNLCKTKYN 53 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhc---CC-CcCccCCCCeEE
Confidence 566776654443 345532 2458999999986 45 489999998764
No 403
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=38.20 E-value=39 Score=21.34 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHcchhhhhhhcCCCcchHHHHHHhhh
Q 003530 745 NLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQH 783 (813)
Q Consensus 745 ~~~~~a~~aL~~i~~~~~~~~~~~~~~~~~~~Lv~~l~~ 783 (813)
.+|..|+++|.++. +....+.|++++.+
T Consensus 2 ~vR~~aa~aLg~~~-----------~~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLG-----------DEEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcC-----------CHhHHHHHHHHhcC
Confidence 36788999999882 33345678888765
No 404
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=37.92 E-value=18 Score=33.55 Aligned_cols=14 Identities=36% Similarity=0.653 Sum_probs=10.9
Q ss_pred CCCCCCCCCCcCCCC
Q 003530 70 GRKPVCPLTQKELRS 84 (813)
Q Consensus 70 ~~~~~CP~t~~~l~~ 84 (813)
|. +.||.|+..+..
T Consensus 122 ~~-f~Cp~Cg~~l~~ 135 (147)
T smart00531 122 GT-FTCPRCGEELEE 135 (147)
T ss_pred Cc-EECCCCCCEEEE
Confidence 54 899999987743
No 405
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=37.86 E-value=38 Score=29.33 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhccCCccHHHHHHcCChHHHHHHHccCCHHHH
Q 003530 253 VEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETK 294 (813)
Q Consensus 253 ~~~a~~~L~~L~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~ 294 (813)
....+..|..|+..|+--..+++.|+++.|+.+|...+.++.
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 345667778888899888899999999999999998876654
No 406
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=36.05 E-value=32 Score=25.59 Aligned_cols=27 Identities=22% Similarity=0.546 Sum_probs=22.8
Q ss_pred ceecccccccC--CCcee--cCCCchhcHHH
Q 003530 32 AFVCPLTKQVM--RDPVT--LENGQTFEREA 58 (813)
Q Consensus 32 ~~~Cpi~~~~m--~dpv~--~~~g~t~~r~~ 58 (813)
.-.||+|++.| .|.++ -.||-.|=|.|
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C 35 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDC 35 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHH
Confidence 46899999999 78877 47898899998
No 407
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=35.86 E-value=40 Score=37.17 Aligned_cols=61 Identities=21% Similarity=0.291 Sum_probs=42.0
Q ss_pred hcCCHHHHHHHHHHHHHhhCCcccHHHHHHc-CChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHh
Q 003530 327 KSGNMQAREAALKALNQISSCEPSAKVLIHA-GILPPLVKDLFTVGSNHLPMRLKEVSATILANVVN 392 (813)
Q Consensus 327 ~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~ 392 (813)
...++++++.+..++.+++.+.++|...+-. ..-..+++++-.+ .+++-+.+..++..+..
T Consensus 338 a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~-----~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 338 AHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTP-----EPRVNKAAARALAILGE 399 (763)
T ss_pred cccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhccc-----ccccchhhhHHHHHhhh
Confidence 4468999999999999999988888754432 2334566666654 35666666666655543
No 408
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=34.91 E-value=14 Score=21.69 Aligned_cols=13 Identities=15% Similarity=0.654 Sum_probs=9.0
Q ss_pred eecccccccCCCc
Q 003530 33 FVCPLTKQVMRDP 45 (813)
Q Consensus 33 ~~Cpi~~~~m~dp 45 (813)
|.||+|+..|.++
T Consensus 1 y~C~~C~~~f~~~ 13 (23)
T PF00096_consen 1 YKCPICGKSFSSK 13 (23)
T ss_dssp EEETTTTEEESSH
T ss_pred CCCCCCCCccCCH
Confidence 5677777777664
No 409
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=34.35 E-value=17 Score=34.21 Aligned_cols=10 Identities=30% Similarity=0.727 Sum_probs=7.4
Q ss_pred CCCCCCCCcC
Q 003530 72 KPVCPLTQKE 81 (813)
Q Consensus 72 ~~~CP~t~~~ 81 (813)
+..||+|+.+
T Consensus 149 P~~CPiCga~ 158 (166)
T COG1592 149 PEVCPICGAP 158 (166)
T ss_pred CCcCCCCCCh
Confidence 4679999854
No 410
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.22 E-value=32 Score=29.25 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=19.9
Q ss_pred CCceecccccccC----CCceec-CCCchhcHHH
Q 003530 30 YDAFVCPLTKQVM----RDPVTL-ENGQTFEREA 58 (813)
Q Consensus 30 ~~~~~Cpi~~~~m----~dpv~~-~~g~t~~r~~ 58 (813)
....+||-|+.-| +||++. -||.+|-|+.
T Consensus 7 GtKridPetg~KFYDLNrdPiVsPytG~s~P~s~ 40 (129)
T COG4530 7 GTKRIDPETGKKFYDLNRDPIVSPYTGKSYPRSY 40 (129)
T ss_pred cccccCccccchhhccCCCccccCcccccchHHH
Confidence 4567899998877 667663 4677775554
No 411
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=34.17 E-value=4.4e+02 Score=25.45 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=28.9
Q ss_pred chHHHHHhhccCchhHHHHHHHHHHhhhhcCc
Q 003530 685 AVEKLIALLDHTNEKVVEASLAALSTVIDDGV 716 (813)
Q Consensus 685 ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~ 716 (813)
++|.|+.|..|+++.++..|...+..+....+
T Consensus 46 cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 46 CVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 78999999999999999999999999976554
No 412
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.95 E-value=36 Score=26.53 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=24.3
Q ss_pred CchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCccc
Q 003530 51 GQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNPS 90 (813)
Q Consensus 51 g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~~l~pn 90 (813)
-+|||..|-+.-+. ..||-|+-.+......|-
T Consensus 28 EcTFCadCae~~l~--------g~CPnCGGelv~RP~RPa 59 (84)
T COG3813 28 ECTFCADCAENRLH--------GLCPNCGGELVARPIRPA 59 (84)
T ss_pred eeehhHhHHHHhhc--------CcCCCCCchhhcCcCChH
Confidence 46999999887773 579999887766666663
No 413
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.89 E-value=34 Score=34.57 Aligned_cols=46 Identities=17% Similarity=0.332 Sum_probs=34.1
Q ss_pred ceecccccccCCCceecCC----CchhcHHHHHHHHHHhhhCCCCCCCCCC
Q 003530 32 AFVCPLTKQVMRDPVTLEN----GQTFEREAIEKWFKECRENGRKPVCPLT 78 (813)
Q Consensus 32 ~~~Cpi~~~~m~dpv~~~~----g~t~~r~~i~~~~~~~~~~~~~~~CP~t 78 (813)
-++|-+|.|-+.|.=.+.| +|.||--|=.+-++..-..|. .+||--
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sge-vYCPSG 317 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGE-VYCPSG 317 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCc-eeCCCC
Confidence 3999999999999855443 799998887777776333453 677765
No 414
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=32.81 E-value=61 Score=26.00 Aligned_cols=48 Identities=21% Similarity=0.327 Sum_probs=21.7
Q ss_pred CceecccccccC-----CCcee--cCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCC
Q 003530 31 DAFVCPLTKQVM-----RDPVT--LENGQTFEREAIEKWFKECRENGRKPVCPLTQKELR 83 (813)
Q Consensus 31 ~~~~Cpi~~~~m-----~dpv~--~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~ 83 (813)
..-+|.||++-. -+|.+ -.|+--.||.|.+-=.++ |. ..||.|+.++.
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErke----g~-q~CpqCkt~yk 62 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKE----GN-QVCPQCKTRYK 62 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHT----S--SB-TTT--B--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhc----Cc-ccccccCCCcc
Confidence 346788888755 34444 356777899998877765 75 88999987664
No 415
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=32.22 E-value=32 Score=22.86 Aligned_cols=10 Identities=20% Similarity=0.557 Sum_probs=7.4
Q ss_pred CCCCCCCCcC
Q 003530 72 KPVCPLTQKE 81 (813)
Q Consensus 72 ~~~CP~t~~~ 81 (813)
+..||+|+.+
T Consensus 18 p~~CP~Cg~~ 27 (34)
T cd00729 18 PEKCPICGAP 27 (34)
T ss_pred CCcCcCCCCc
Confidence 3679999864
No 416
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=30.75 E-value=1.1e+02 Score=29.70 Aligned_cols=64 Identities=22% Similarity=0.259 Sum_probs=48.6
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHcchhhhhhhcCCCcchHHHHHHhhhcCchhHHHHHHHHHHhcc
Q 003530 732 KPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDK 801 (813)
Q Consensus 732 ~~L~~ll~~~~~~~~~~~a~~aL~~i~~~~~~~~~~~~~~~~~~~Lv~~l~~~~~~~~~~Aa~~L~~l~~ 801 (813)
+.++++. -+.+..++..|+..++.+.+- -+..-...++.||.+..+.++.+|..|-..|..+..
T Consensus 11 ~~Il~~~-~~~~~~vr~~Al~~l~~il~q-----GLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 11 KNILELC-LSSDDSVRLAALQVLELILRQ-----GLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHH-hCCCHHHHHHHHHHHHHHHhc-----CCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 4566666 389999999999999999753 111111224689999999999999999999998863
No 417
>PLN02189 cellulose synthase
Probab=30.03 E-value=40 Score=41.07 Aligned_cols=48 Identities=23% Similarity=0.338 Sum_probs=34.8
Q ss_pred CceecccccccC-----CCcee--cCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCC
Q 003530 31 DAFVCPLTKQVM-----RDPVT--LENGQTFEREAIEKWFKECRENGRKPVCPLTQKELR 83 (813)
Q Consensus 31 ~~~~Cpi~~~~m-----~dpv~--~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~ 83 (813)
..-.|+||++-. -+|.+ -.||.-.||.|.+-=.+ +|+ ..||.|+..+.
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~----eg~-q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERR----EGT-QNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhh----cCC-ccCcccCCchh
Confidence 345999999864 45654 24777799999854444 376 89999998765
No 418
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=29.76 E-value=54 Score=38.60 Aligned_cols=62 Identities=19% Similarity=0.204 Sum_probs=41.5
Q ss_pred cCCCCCceecccccccCCCcee-cCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCcc
Q 003530 26 IEPIYDAFVCPLTKQVMRDPVT-LENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRSTDLNP 89 (813)
Q Consensus 26 ~~~~~~~~~Cpi~~~~m~dpv~-~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~~~l~p 89 (813)
.....-.+.|||++..|.=|+- ..|+|-=|-.. ..++..+.+.+. ..||+|.....-..++-
T Consensus 300 tt~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~-~~~lq~n~~~pT-W~CPVC~~~~~~e~l~i 362 (636)
T KOG2169|consen 300 TTSLRVSLNCPLSKMRMSLPARGHTCKHLQCFDA-LSYLQMNEQKPT-WRCPVCQKAAPFEGLII 362 (636)
T ss_pred eccceeEecCCcccceeecCCcccccccceecch-hhhHHhccCCCe-eeCccCCccccccchhh
Confidence 4455567999999999999986 78887655442 344544444454 78999977544444433
No 419
>PLN02195 cellulose synthase A
Probab=29.39 E-value=42 Score=40.65 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=34.5
Q ss_pred eecccccc-----cCCCcee--cCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCC
Q 003530 33 FVCPLTKQ-----VMRDPVT--LENGQTFEREAIEKWFKECRENGRKPVCPLTQKELR 83 (813)
Q Consensus 33 ~~Cpi~~~-----~m~dpv~--~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~ 83 (813)
-.|.||++ .+-+|-+ -.||.-.||.|.+-=-+ .|+ ..||+|+..+.
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~----eg~-q~CpqCkt~Yk 59 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIK----EGR-KVCLRCGGPYD 59 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhhhhhh----cCC-ccCCccCCccc
Confidence 37999988 3457765 37788899999854444 376 88999998886
No 420
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.10 E-value=3.9e+02 Score=31.31 Aligned_cols=143 Identities=15% Similarity=0.077 Sum_probs=90.4
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhh--cCc----hhHhHHhhhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCc
Q 003530 195 RTIVKFLSHELSREREEAVSLLYELS--KSE----ALCEKIGSINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCEN 268 (813)
Q Consensus 195 ~~Lv~lL~~~~~~~~~~a~~~L~~ls--~~~----~~~~~i~~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~ 268 (813)
|.|-+-|+-.+..+|.+|+.++.++- .++ +....+.. .-...|.+||+ ++.+.++..|..-+.....
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~--kQf~~l~~LL~--d~~p~VRS~a~~gv~k~~s--- 249 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ--KQFEELYSLLE--DPYPMVRSTAILGVCKITS--- 249 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH--HHHHHHHHHhc--CCCchHHHHHHHHHHHHHH---
Confidence 44556677889999999999999984 233 33455542 45778999999 8889998877765544311
Q ss_pred cHHHHHHcCChHHHH----HHHc-cCCHHHHHHHHHHHHHhcCCchhHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003530 269 NVRQMAENGRLQPLL----TQIL-EGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQ 343 (813)
Q Consensus 269 ~~~~i~~~G~i~~Lv----~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~gi~~Lv~lL~~~~~~~~~~a~~aL~~ 343 (813)
--..+.-...+..|+ .-+. +...+++......|-.+..++.... +.+.++|.|--.|.+.++.++-++...|..
T Consensus 250 ~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~-~le~~Lpal~~~l~D~se~VRvA~vd~ll~ 328 (1005)
T KOG1949|consen 250 KFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHP-LLEQLLPALRYSLHDNSEKVRVAFVDMLLK 328 (1005)
T ss_pred HHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchh-HHHHHHHhcchhhhccchhHHHHHHHHHHH
Confidence 011111111222222 2222 2245777777777777766665433 444567777777888888999888888876
Q ss_pred hh
Q 003530 344 IS 345 (813)
Q Consensus 344 Ls 345 (813)
|=
T Consensus 329 ik 330 (1005)
T KOG1949|consen 329 IK 330 (1005)
T ss_pred HH
Confidence 63
No 421
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=29.08 E-value=6.3e+02 Score=25.75 Aligned_cols=74 Identities=19% Similarity=0.177 Sum_probs=45.8
Q ss_pred HHHcCChHHHHHHHccCCHH--------HHHHHHHHHHHhcCCchhHHHHHhhhHHHHHHHHhcCC--HHHHHHHHHHHH
Q 003530 273 MAENGRLQPLLTQILEGPQE--------TKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGN--MQAREAALKALN 342 (813)
Q Consensus 273 i~~~G~i~~Lv~lL~~~~~~--------~~~~a~~~L~~L~~~~~~~~~i~~~gi~~Lv~lL~~~~--~~~~~~a~~aL~ 342 (813)
+.+.-++++++++++.++.- +-+....+|..++ ++-+..|-+++.+++ .-++.+|.++|.
T Consensus 69 ~re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~----------~G~~~~L~~li~~~~~~~yvR~aa~~aL~ 138 (249)
T PF06685_consen 69 FREERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG----------DGDIEPLKELIEDPDADEYVRMAAISALA 138 (249)
T ss_pred HhhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh----------CCCHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 34557889999999766432 1222222222222 122677888887654 456889999999
Q ss_pred HhhCC-cccHHHHHH
Q 003530 343 QISSC-EPSAKVLIH 356 (813)
Q Consensus 343 ~Ls~~-~~~~~~i~~ 356 (813)
.+... +..|..+++
T Consensus 139 ~l~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 139 FLVHEGPISREEVIQ 153 (249)
T ss_pred HHHHcCCCCHHHHHH
Confidence 98874 566776544
No 422
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=28.89 E-value=33 Score=33.16 Aligned_cols=44 Identities=14% Similarity=0.335 Sum_probs=34.5
Q ss_pred eecccccccCCCcee-cCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCC
Q 003530 33 FVCPLTKQVMRDPVT-LENGQTFEREAIEKWFKECRENGRKPVCPLTQKEL 82 (813)
Q Consensus 33 ~~Cpi~~~~m~dpv~-~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l 82 (813)
-.|.+|..+.-.-+. =.||..|-+.||+.|+.+ ...||-|+--.
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~------~~~cphc~d~w 226 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR------RDICPHCGDLW 226 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc------cCcCCchhccc
Confidence 579999998766443 366777899999999975 58899997543
No 423
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=28.43 E-value=40 Score=25.45 Aligned_cols=37 Identities=22% Similarity=0.208 Sum_probs=22.5
Q ss_pred cCCCCCceecccccccCCCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCC
Q 003530 26 IEPIYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQ 79 (813)
Q Consensus 26 ~~~~~~~~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~ 79 (813)
+..-.-.|.||-|++.+- .-| .-|| ..|+.+.||.|+
T Consensus 21 p~e~~v~F~CPnCGe~~I----~Rc--~~CR-----------k~g~~Y~Cp~CG 57 (61)
T COG2888 21 PGETAVKFPCPNCGEVEI----YRC--AKCR-----------KLGNPYRCPKCG 57 (61)
T ss_pred cCCceeEeeCCCCCceee----ehh--hhHH-----------HcCCceECCCcC
Confidence 444556799999997541 122 1122 236668999997
No 424
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=28.17 E-value=3.2e+02 Score=30.90 Aligned_cols=96 Identities=17% Similarity=0.317 Sum_probs=56.7
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCC-hHHHHHHHHHHHHhC---C
Q 003530 412 EDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQ-NDLRLASIELIQNLS---P 487 (813)
Q Consensus 412 ~~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~~L~~Ls---~ 487 (813)
.++|..+++.+. .+.+.+-.++.+. +..+.....+..-+.+.+.++.|+.+|.... .+++.+|+..|+.+. .
T Consensus 20 ~~~v~~llkHI~--~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 20 PNFVDNLLKHID--TPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred ccHHHHHHHhcC--CcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 466777777763 4445444444444 2223333456666778899999999997443 477888887766653 2
Q ss_pred CC---------CHHHHHHHhcccccHHHHHHhhh
Q 003530 488 HM---------GHELADALRGAVGQLGSLIRVIS 512 (813)
Q Consensus 488 ~~---------~~~~~~~l~~~~g~i~~Lv~ll~ 512 (813)
+. ++.+...+... ..+..|++.+-
T Consensus 96 n~~~~~~~~igpn~L~r~L~S~-~~v~~Ll~~mL 128 (475)
T PF04499_consen 96 NAPQNEQSSIGPNPLTRQLVSE-ETVEKLLDIML 128 (475)
T ss_pred ccccccccCCCccHHHHHHhCh-HHHHHHHHHHh
Confidence 11 23444444444 56666665544
No 425
>PLN03086 PRLI-interacting factor K; Provisional
Probab=28.03 E-value=58 Score=37.26 Aligned_cols=15 Identities=40% Similarity=0.685 Sum_probs=6.6
Q ss_pred CCchhcHHHHHHHHH
Q 003530 50 NGQTFEREAIEKWFK 64 (813)
Q Consensus 50 ~g~t~~r~~i~~~~~ 64 (813)
||..|-...++++..
T Consensus 459 Cgk~f~~s~LekH~~ 473 (567)
T PLN03086 459 CGQAFQQGEMEKHMK 473 (567)
T ss_pred CCCccchHHHHHHHH
Confidence 344444444444444
No 426
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=27.55 E-value=42 Score=25.86 Aligned_cols=12 Identities=42% Similarity=1.162 Sum_probs=9.5
Q ss_pred hcHHHHHHHHHH
Q 003530 54 FEREAIEKWFKE 65 (813)
Q Consensus 54 ~~r~~i~~~~~~ 65 (813)
|||.|+.+|..+
T Consensus 12 FCRNCLskWy~~ 23 (68)
T PF06844_consen 12 FCRNCLSKWYRE 23 (68)
T ss_dssp --HHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999986
No 427
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=27.51 E-value=1.5e+02 Score=26.10 Aligned_cols=39 Identities=15% Similarity=0.086 Sum_probs=32.9
Q ss_pred CCHHHHHHHhccCcHHHHHHHHHHHHHhhcCchhHhHHh
Q 003530 192 DTVRTIVKFLSHELSREREEAVSLLYELSKSEALCEKIG 230 (813)
Q Consensus 192 g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~ 230 (813)
-+|+.|++-|.+.+.++...|+.+|.+.+.++...+.++
T Consensus 8 w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v 46 (115)
T PF14663_consen 8 WGIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLV 46 (115)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHH
Confidence 468899999999999999999999999988875555554
No 428
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=27.41 E-value=33 Score=33.61 Aligned_cols=43 Identities=21% Similarity=0.443 Sum_probs=31.2
Q ss_pred Cceecccccc-cCCCcee-----cCCCchhcHHHHHHHHHHhhhCCCCCCCCCC
Q 003530 31 DAFVCPLTKQ-VMRDPVT-----LENGQTFEREAIEKWFKECRENGRKPVCPLT 78 (813)
Q Consensus 31 ~~~~Cpi~~~-~m~dpv~-----~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t 78 (813)
.+-.||+|+. .+-+|=+ -.|=|..|-+|+-+-|.. |. ..||.-
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~----Gp-AqCP~~ 57 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSR----GP-AQCPYK 57 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcC----CC-CCCCCc
Confidence 3568999984 4455521 137899999999999986 64 889943
No 429
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=27.01 E-value=36 Score=29.59 Aligned_cols=15 Identities=20% Similarity=0.233 Sum_probs=10.9
Q ss_pred CCceecccccccCCC
Q 003530 30 YDAFVCPLTKQVMRD 44 (813)
Q Consensus 30 ~~~~~Cpi~~~~m~d 44 (813)
....+||-|+.-|.|
T Consensus 7 GtKR~Cp~CG~kFYD 21 (108)
T PF09538_consen 7 GTKRTCPSCGAKFYD 21 (108)
T ss_pred CCcccCCCCcchhcc
Confidence 456888888877755
No 430
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=27.01 E-value=60 Score=30.77 Aligned_cols=28 Identities=29% Similarity=0.688 Sum_probs=22.0
Q ss_pred eecccccccCCCceecCCCchhcHHHHHHHHHH
Q 003530 33 FVCPLTKQVMRDPVTLENGQTFEREAIEKWFKE 65 (813)
Q Consensus 33 ~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~ 65 (813)
+.||-||.+|-|-+-- =-+.+|-.|...
T Consensus 88 YICPFTGKVF~DNt~~-----nPQDAIYDWvSk 115 (238)
T PF10915_consen 88 YICPFTGKVFGDNTHP-----NPQDAIYDWVSK 115 (238)
T ss_pred EEcCCcCccccCCCCC-----ChHHHHHHHHhh
Confidence 8999999999996432 237899999864
No 431
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=26.80 E-value=60 Score=29.24 Aligned_cols=44 Identities=16% Similarity=0.425 Sum_probs=33.7
Q ss_pred ceecccccccCCC--cee-cCCC------chhcHHHHHHHHHHhhhCCCCCCCCCCCcC
Q 003530 32 AFVCPLTKQVMRD--PVT-LENG------QTFEREAIEKWFKECRENGRKPVCPLTQKE 81 (813)
Q Consensus 32 ~~~Cpi~~~~m~d--pv~-~~~g------~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~ 81 (813)
..-|.||.+-..+ =|+ +++| |-||..|+++|-.+ ....|.-+..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~------~~rDPfnR~I 78 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE------RNRDPFNRNI 78 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh------ccCCCcccce
Confidence 5789999999987 555 6776 45899999999654 3667887654
No 432
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=26.64 E-value=74 Score=33.11 Aligned_cols=47 Identities=13% Similarity=0.198 Sum_probs=34.5
Q ss_pred CceecccccccCCCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcC
Q 003530 31 DAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKE 81 (813)
Q Consensus 31 ~~~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~ 81 (813)
++-.|-||-+-..=--++||||..|-.|--+.-.- -. ...||+|+-.
T Consensus 60 en~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRAL---Y~-~K~C~~CrTE 106 (493)
T COG5236 60 ENMNCQICAGSTTYSARYPCGHQICHACAVRLRAL---YM-QKGCPLCRTE 106 (493)
T ss_pred ccceeEEecCCceEEEeccCCchHHHHHHHHHHHH---Hh-ccCCCccccc
Confidence 35789999988877778999999998886544332 11 3789999753
No 433
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=26.64 E-value=1e+02 Score=34.11 Aligned_cols=62 Identities=19% Similarity=0.240 Sum_probs=55.1
Q ss_pred hcCChHHHHHHHHHHHHHHcchhhhhhhcCCCcchHHHHHHhhhcCchhHHHHHHHHHHhcc
Q 003530 740 EKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDK 801 (813)
Q Consensus 740 ~~~~~~~~~~a~~aL~~i~~~~~~~~~~~~~~~~~~~Lv~~l~~~~~~~~~~Aa~~L~~l~~ 801 (813)
.+.++++++.|.-++.++.-+.++++....+..+-..+++++....+.+-+.|+.||+.+.+
T Consensus 338 a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 338 AHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred cccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 47899999999999999998888888777777777889999999999999999999998764
No 434
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=26.21 E-value=49 Score=38.74 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=11.1
Q ss_pred ecccccccCCCceecCCCchhcHHH
Q 003530 34 VCPLTKQVMRDPVTLENGQTFEREA 58 (813)
Q Consensus 34 ~Cpi~~~~m~dpv~~~~g~t~~r~~ 58 (813)
.||-|+.. .+.|..||..|
T Consensus 3 ~Cp~Cg~~------n~~~akFC~~C 21 (645)
T PRK14559 3 ICPQCQFE------NPNNNRFCQKC 21 (645)
T ss_pred cCCCCCCc------CCCCCcccccc
Confidence 46666653 34555666666
No 435
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=26.02 E-value=7.4e+02 Score=25.50 Aligned_cols=166 Identities=17% Similarity=0.154 Sum_probs=92.0
Q ss_pred CChHHHHHHHccC--CHHHHHHHHHHHHHhcCCch--------hHHHHHhhh-HHHHHHHHhcCC----HHHHHHHHHHH
Q 003530 277 GRLQPLLTQILEG--PQETKLSLAAFLGDLALNSD--------VKVLVARTV-GSCLINIMKSGN----MQAREAALKAL 341 (813)
Q Consensus 277 G~i~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~--------~~~~i~~~g-i~~Lv~lL~~~~----~~~~~~a~~aL 341 (813)
|..+-+..++-.| +....+.+...|..|...++ ++-.+.=.+ +|-++.-+..++ ......++..|
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEAL 139 (262)
T ss_pred CCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 4555555555555 45566677778888776332 222222223 577777776666 23455777888
Q ss_pred HHhhCCcccHHHHHHcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC-CCCcccccCCCCccccchhhHHHHHH
Q 003530 342 NQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSG-HDFDSITVGPDNQTLVSEDIVHNLLH 420 (813)
Q Consensus 342 ~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~-~~~~~~~~~~~~~~l~~~~~v~~Lv~ 420 (813)
..+|.... .+.+..++....... -.....-...+...|+..- +. .+...+.-|++
T Consensus 140 a~~a~~~~-------~~~La~il~~ya~~~----fr~~~dfl~~v~~~l~~~f~P~-------------~~~~~l~~Ll~ 195 (262)
T PF14225_consen 140 AQVAEAQG-------LPNLARILSSYAKGR----FRDKDDFLSQVVSYLREAFFPD-------------HEFQILTFLLG 195 (262)
T ss_pred HHHHHhCC-------CccHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHHhCch-------------hHHHHHHHHHH
Confidence 88885321 112333333333221 1222223333333333321 11 12456777999
Q ss_pred hhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHhcCCHHHHHHhhhCCC
Q 003530 421 LISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQ 471 (813)
Q Consensus 421 lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~ 471 (813)
+|.++.+-+|..+..+|..+-........ ...+-+.+|.+++..+.
T Consensus 196 lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-----~~~dlispllrlL~t~~ 241 (262)
T PF14225_consen 196 LLENGPPWLRRKTLQILKVLLPHVDMRSP-----HGADLISPLLRLLQTDL 241 (262)
T ss_pred HHhCCcHHHHHHHHHHHHHHhccccCCCC-----cchHHHHHHHHHhCCcc
Confidence 99999999999999999988776332111 22334777888886653
No 436
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=25.90 E-value=4.7e+02 Score=25.24 Aligned_cols=138 Identities=20% Similarity=0.153 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhhcCchhHhHHh------------hhhchHHHHHHhcccCCCCHHHHHHHHHHHHhhccCCccHHHHHH
Q 003530 208 EREEAVSLLYELSKSEALCEKIG------------SINGAILILVGMTSSKSENLLTVEKAEKTLANLEKCENNVRQMAE 275 (813)
Q Consensus 208 ~~~~a~~~L~~ls~~~~~~~~i~------------~~~g~i~~Lv~lL~~~s~~~~~~~~a~~~L~~L~~~~~~~~~i~~ 275 (813)
+|..|+.+|..+.+.-+.|...+ ........+.-++. +.++.++..|+.+|..|-...+.--..++
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~--Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae 79 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILK--DPSPKVRAAAASALAALLEGSKPFLAQAE 79 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHc--CCchhHHHHHHHHHHHHHHccHHHHHHHH
Confidence 45666666666666522221111 11122344444555 78899999999999887433322222222
Q ss_pred -----cCCh---------------HHHHHHHccC-CHHHHHHHHHHHHHhcCC-chhH--HHHHhhhHHHHHHHHhcCCH
Q 003530 276 -----NGRL---------------QPLLTQILEG-PQETKLSLAAFLGDLALN-SDVK--VLVARTVGSCLINIMKSGNM 331 (813)
Q Consensus 276 -----~G~i---------------~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~-~~~~--~~i~~~gi~~Lv~lL~~~~~ 331 (813)
.+.+ ..|+..|..+ +..+.....++|..|..+ +-.| ..+...-+..+-.++.+.+.
T Consensus 80 ~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~ 159 (182)
T PF13251_consen 80 ESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDP 159 (182)
T ss_pred hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCC
Confidence 1111 2334444433 566777778888888764 3332 22222224455556666788
Q ss_pred HHHHHHHHHHHHhhCC
Q 003530 332 QAREAALKALNQISSC 347 (813)
Q Consensus 332 ~~~~~a~~aL~~Ls~~ 347 (813)
.++..++.++..|...
T Consensus 160 ~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 160 NVRVAALSCLGALLSV 175 (182)
T ss_pred cHHHHHHHHHHHHHcC
Confidence 8888888888887663
No 437
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=25.53 E-value=27 Score=32.21 Aligned_cols=36 Identities=31% Similarity=0.709 Sum_probs=22.0
Q ss_pred CCCchhcHHHHHHHHHHh------hhCCCCCCCCCCCcCC-CCCCCccc
Q 003530 49 ENGQTFEREAIEKWFKEC------RENGRKPVCPLTQKEL-RSTDLNPS 90 (813)
Q Consensus 49 ~~g~t~~r~~i~~~~~~~------~~~~~~~~CP~t~~~l-~~~~l~pn 90 (813)
.+||.|+ .||... ...|- .+||+|+..- ...-+-|+
T Consensus 9 ~~gH~FE-----gWF~ss~~fd~Q~~~gl-v~CP~Cgs~~V~K~lmAP~ 51 (148)
T PF06676_consen 9 ENGHEFE-----GWFRSSAAFDRQQARGL-VSCPVCGSTEVSKALMAPA 51 (148)
T ss_pred CCCCccc-----eecCCHHHHHHHHHcCC-ccCCCCCCCeEeeecCCCe
Confidence 4689884 588742 22465 8999998743 22334444
No 438
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=25.33 E-value=37 Score=21.05 Aligned_cols=8 Identities=25% Similarity=0.592 Sum_probs=3.9
Q ss_pred cccccccC
Q 003530 35 CPLTKQVM 42 (813)
Q Consensus 35 Cpi~~~~m 42 (813)
||-|+...
T Consensus 3 CP~C~~~V 10 (26)
T PF10571_consen 3 CPECGAEV 10 (26)
T ss_pred CCCCcCCc
Confidence 55555443
No 439
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=25.15 E-value=20 Score=26.42 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=11.3
Q ss_pred eecccccccCCC
Q 003530 33 FVCPLTKQVMRD 44 (813)
Q Consensus 33 ~~Cpi~~~~m~d 44 (813)
|.||-|+.+|++
T Consensus 18 lrCPRC~~~FR~ 29 (65)
T COG4049 18 LRCPRCGMVFRR 29 (65)
T ss_pred eeCCchhHHHHH
Confidence 899999999987
No 440
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=24.68 E-value=2.3e+02 Score=25.30 Aligned_cols=53 Identities=11% Similarity=0.189 Sum_probs=41.0
Q ss_pred HHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhh
Q 003530 460 TISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVIS 512 (813)
Q Consensus 460 i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~ 512 (813)
+..|..-|+++++.|+.+++++|..|+...+..+...+......|..+...-.
T Consensus 40 ~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g 92 (122)
T cd03572 40 LEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKG 92 (122)
T ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCC
Confidence 56778888888899999999999999977778887777765455555555544
No 441
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=24.43 E-value=31 Score=25.27 Aligned_cols=14 Identities=36% Similarity=0.788 Sum_probs=11.3
Q ss_pred CCCCCceecccccc
Q 003530 27 EPIYDAFVCPLTKQ 40 (813)
Q Consensus 27 ~~~~~~~~Cpi~~~ 40 (813)
.+.|+++.||+|+.
T Consensus 29 ~~Lp~~w~CP~C~a 42 (50)
T cd00730 29 EDLPDDWVCPVCGA 42 (50)
T ss_pred hHCCCCCCCCCCCC
Confidence 34688999999975
No 442
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.38 E-value=69 Score=35.96 Aligned_cols=51 Identities=14% Similarity=0.228 Sum_probs=37.6
Q ss_pred CCceecccccccCCC-ceecCCCchhcHHHHHHHHHHhhhCCCC--CCCCCCCc
Q 003530 30 YDAFVCPLTKQVMRD-PVTLENGQTFEREAIEKWFKECRENGRK--PVCPLTQK 80 (813)
Q Consensus 30 ~~~~~Cpi~~~~m~d-pv~~~~g~t~~r~~i~~~~~~~~~~~~~--~~CP~t~~ 80 (813)
.....|.||.+-..+ .+.+.|||-||..|+..|+......+.. .+||..+.
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C 121 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGC 121 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCc
Confidence 456899999998875 5668999999999999999863222211 36776654
No 443
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=24.17 E-value=1.7e+02 Score=26.81 Aligned_cols=70 Identities=13% Similarity=0.232 Sum_probs=47.3
Q ss_pred hhHhhhccCCCCcccHHHHHHHHHHHhhcCC-cccccccccCcHHH-HHHHhcC---CCHHHHHHHHHHHHHhhc
Q 003530 110 DMARKSLNLGSSESDIMPALKYVQYFCQSSR-SNKHVVHNSELIPM-IIDMLKS---SSRKVRCTALETLRIVVE 179 (813)
Q Consensus 110 ~~~~~~l~~~~~~~~~~~al~~l~~l~~~~~-~~r~~i~~~g~i~~-Lv~lL~s---~~~~~~~~al~~L~~L~~ 179 (813)
..+.+++..+.+...+..||.-|..+.+... .....|...+.+.. |++++.. .+..++.+.+..+...+.
T Consensus 41 ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 41 RALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 3455667543444455667777777777654 45556777788886 8898852 346888888888887754
No 444
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=24.06 E-value=46 Score=29.55 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=11.1
Q ss_pred CCceecccccccCCC
Q 003530 30 YDAFVCPLTKQVMRD 44 (813)
Q Consensus 30 ~~~~~Cpi~~~~m~d 44 (813)
....+||-|+.-|.|
T Consensus 7 GtKr~Cp~cg~kFYD 21 (129)
T TIGR02300 7 GTKRICPNTGSKFYD 21 (129)
T ss_pred CccccCCCcCccccc
Confidence 456889988887744
No 445
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=23.92 E-value=74 Score=39.06 Aligned_cols=48 Identities=19% Similarity=0.301 Sum_probs=34.9
Q ss_pred CceecccccccC-----CCcee--cCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCC
Q 003530 31 DAFVCPLTKQVM-----RDPVT--LENGQTFEREAIEKWFKECRENGRKPVCPLTQKELR 83 (813)
Q Consensus 31 ~~~~Cpi~~~~m-----~dpv~--~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~ 83 (813)
..-.|.||++-. -||-+ -.||.-.||.|.+-=.++ |+ ..||+|+..+.
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~e----G~-q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKD----GN-QSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhc----CC-ccCCccCCchh
Confidence 335899999863 45655 367777999998544444 76 88999997664
No 446
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=23.92 E-value=30 Score=20.03 Aligned_cols=12 Identities=33% Similarity=0.919 Sum_probs=5.8
Q ss_pred eecccccccCCC
Q 003530 33 FVCPLTKQVMRD 44 (813)
Q Consensus 33 ~~Cpi~~~~m~d 44 (813)
|.||+|+..+.+
T Consensus 1 ~~C~~C~~~~~~ 12 (24)
T PF13894_consen 1 FQCPICGKSFRS 12 (24)
T ss_dssp EE-SSTS-EESS
T ss_pred CCCcCCCCcCCc
Confidence 456666665554
No 447
>PLN02436 cellulose synthase A
Probab=23.89 E-value=58 Score=39.84 Aligned_cols=48 Identities=17% Similarity=0.332 Sum_probs=34.9
Q ss_pred CceecccccccC-----CCceec--CCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCC
Q 003530 31 DAFVCPLTKQVM-----RDPVTL--ENGQTFEREAIEKWFKECRENGRKPVCPLTQKELR 83 (813)
Q Consensus 31 ~~~~Cpi~~~~m-----~dpv~~--~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~ 83 (813)
..-.|.||++-. -||-+. .||.-.||.|.+-=.+ +|+ ..||.|+..+.
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~----eg~-~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERR----EGN-QACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhh----cCC-ccCcccCCchh
Confidence 446999999864 456552 5677799999854444 475 89999998765
No 448
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=23.87 E-value=1.4e+02 Score=29.50 Aligned_cols=102 Identities=10% Similarity=0.087 Sum_probs=42.1
Q ss_pred hHhHHhhhhchHHHHHHhcccCCCC----------------HHHHHHHHHHHHhhcc-CCccHHHHHHcCChHHHHHHHc
Q 003530 225 LCEKIGSINGAILILVGMTSSKSEN----------------LLTVEKAEKTLANLEK-CENNVRQMAENGRLQPLLTQIL 287 (813)
Q Consensus 225 ~~~~i~~~~g~i~~Lv~lL~~~s~~----------------~~~~~~a~~~L~~L~~-~~~~~~~i~~~G~i~~Lv~lL~ 287 (813)
.++.+.+..|++..++.+|..+-.. .++...+...|..++. +.+|+..+.+. ++.++..+.
T Consensus 34 ~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~ 111 (207)
T PF01365_consen 34 ERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFM 111 (207)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HH
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHH
Confidence 4555666778888888887642111 3566777888888865 56677777763 333333333
Q ss_pred cCCHHHHHHHHHHHHHhcC-CchhHHHHHhhhHHHHHHHHhc
Q 003530 288 EGPQETKLSLAAFLGDLAL-NSDVKVLVARTVGSCLINIMKS 328 (813)
Q Consensus 288 ~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~gi~~Lv~lL~~ 328 (813)
......-..+..+|..+-. +.+-...+.+.-+..+++++..
T Consensus 112 ~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~I~~~i~ll~~ 153 (207)
T PF01365_consen 112 QLQIGYGLGALDVLTEIFRDNPELCESISEEHIEKFIELLRK 153 (207)
T ss_dssp CCCH-TTHHHHHHHHHHHTT----------------------
T ss_pred HhhccCCchHHHHHHHHHHCcHHHHHHhhHHHHHHHHHHHHH
Confidence 3211111234445555444 2334444444446777777754
No 449
>PHA03096 p28-like protein; Provisional
Probab=23.78 E-value=55 Score=33.99 Aligned_cols=45 Identities=18% Similarity=0.305 Sum_probs=31.0
Q ss_pred eecccccccCCC--------ceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCc
Q 003530 33 FVCPLTKQVMRD--------PVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQK 80 (813)
Q Consensus 33 ~~Cpi~~~~m~d--------pv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~ 80 (813)
-.|-||.+.-.+ -.+-.|.|.||-.||..|-.+- ....+||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~---~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTES---LYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhh---hhcccCccccc
Confidence 568888876532 2345789999999999999862 12255666654
No 450
>PRK05978 hypothetical protein; Provisional
Probab=23.59 E-value=42 Score=30.99 Aligned_cols=32 Identities=19% Similarity=0.444 Sum_probs=22.1
Q ss_pred ceecccccccCCCceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCCC
Q 003530 32 AFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKELRS 84 (813)
Q Consensus 32 ~~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~~ 84 (813)
.-+||-|++ |+-|. .|++- ...||.|++.+..
T Consensus 33 ~grCP~CG~----------G~LF~-----g~Lkv------~~~C~~CG~~~~~ 64 (148)
T PRK05978 33 RGRCPACGE----------GKLFR-----AFLKP------VDHCAACGEDFTH 64 (148)
T ss_pred cCcCCCCCC----------Ccccc-----ccccc------CCCccccCCcccc
Confidence 368999987 55553 45543 4789999987753
No 451
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=23.55 E-value=62 Score=24.00 Aligned_cols=10 Identities=30% Similarity=0.637 Sum_probs=7.8
Q ss_pred CCCCCCCCcC
Q 003530 72 KPVCPLTQKE 81 (813)
Q Consensus 72 ~~~CP~t~~~ 81 (813)
+.+||.|++.
T Consensus 28 PlyCpKCK~E 37 (55)
T PF14205_consen 28 PLYCPKCKQE 37 (55)
T ss_pred cccCCCCCce
Confidence 5789999863
No 452
>COG1773 Rubredoxin [Energy production and conversion]
Probab=23.52 E-value=56 Score=24.43 Aligned_cols=14 Identities=36% Similarity=0.648 Sum_probs=10.9
Q ss_pred CCCCCceecccccc
Q 003530 27 EPIYDAFVCPLTKQ 40 (813)
Q Consensus 27 ~~~~~~~~Cpi~~~ 40 (813)
.+.|++..||.|+-
T Consensus 31 edlPd~w~CP~Cg~ 44 (55)
T COG1773 31 EDLPDDWVCPECGV 44 (55)
T ss_pred hhCCCccCCCCCCC
Confidence 66778888888874
No 453
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=23.17 E-value=56 Score=21.65 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=20.0
Q ss_pred ecccccccCCC--ceecCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCC
Q 003530 34 VCPLTKQVMRD--PVTLENGQTFEREAIEKWFKECRENGRKPVCPLTQKEL 82 (813)
Q Consensus 34 ~Cpi~~~~m~d--pv~~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l 82 (813)
.|+.|.+.+.+ .++..-|..|-..| +.|..|+.+|
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~C--------------f~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPEC--------------FKCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEEEeCCccccccC--------------CCCcccCCcC
Confidence 36777777666 34334444443332 6677776655
No 454
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=23.12 E-value=2.7e+02 Score=25.56 Aligned_cols=68 Identities=10% Similarity=0.195 Sum_probs=47.1
Q ss_pred HHHHHHhhh-CCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHH-HHHhhhcCCC-ChHHHHHHHHHH
Q 003530 460 TISLVQFVE-APQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGS-LIRVISENVG-ISKEQAAAVGLL 528 (813)
Q Consensus 460 i~~Lv~lL~-~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~-Lv~ll~~~~~-~~~~~~~a~~~L 528 (813)
+..|..-|. +.++.++..|+.+|-.+..+.+..+...+... +.+.. |++++..... ..+++...+.++
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask-~Fl~e~L~~~i~~~~~~~~~Vk~kil~li 110 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKK-DFIKDVLVKLINPKNNPPTIVQEKVLALI 110 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHH-HhhhHHHHHHHcccCCCcHHHHHHHHHHH
Confidence 344444444 45778888899999999888888888888776 78887 9999864321 125555555554
No 455
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=23.10 E-value=1e+03 Score=28.44 Aligned_cols=114 Identities=11% Similarity=0.158 Sum_probs=69.8
Q ss_pred ChHHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhcCCChHHHHHHHHHHH
Q 003530 359 ILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLV 438 (813)
Q Consensus 359 ~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~~~~~~~~~~a~~~L~ 438 (813)
.|..|..+.+. +-..++..++.++.+|..+.+..+ ...+..||.-|-.+...+-.+|...|.
T Consensus 305 fievLe~lS~D-----~L~~vk~raL~ti~~lL~~kPEqE-------------~~LL~~lVNKlGDpqnKiaskAsylL~ 366 (988)
T KOG2038|consen 305 FIEVLEELSKD-----PLEEVKKRALKTIYDLLTNKPEQE-------------NNLLVLLVNKLGDPQNKIASKASYLLE 366 (988)
T ss_pred HHHHHHHHccc-----cHHHHHHHHHHHHHHHHhCCcHHH-------------HHHHHHHHHhcCCcchhhhhhHHHHHH
Confidence 44555544443 458899999999999988766433 355667777776667777778888888
Q ss_pred HcccCCCchHHHHHHHHhcCCHHHHHHhhhCCCh--HHHHHHHHHHHHhC-CCCCHHHHHHHh
Q 003530 439 GLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQN--DLRLASIELIQNLS-PHMGHELADALR 498 (813)
Q Consensus 439 ~L~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~--~v~~~A~~~L~~Ls-~~~~~~~~~~l~ 498 (813)
+|...+.. ++..+ +..+..++-.++. .....|+..|..+. .+...+++..+.
T Consensus 367 ~L~~~HPn---MK~Vv-----i~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi 421 (988)
T KOG2038|consen 367 GLLAKHPN---MKIVV-----IDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLI 421 (988)
T ss_pred HHHhhCCc---ceeeh-----HHHHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHH
Confidence 77554332 22222 4455556655554 44456666666554 344444554444
No 456
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=23.09 E-value=63 Score=32.87 Aligned_cols=40 Identities=23% Similarity=0.472 Sum_probs=23.8
Q ss_pred eecccccccCCCceecCCCchhcHHHHHHHHHHhhhCC-CCCCCCCCCcCCCCC
Q 003530 33 FVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRENG-RKPVCPLTQKELRST 85 (813)
Q Consensus 33 ~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~~~~~~-~~~~CP~t~~~l~~~ 85 (813)
+.|+||++.|.-|=++. ||. |.- .| .++.||.|+..|.+.
T Consensus 188 c~C~iCGKaFSRPWLLQ-GHi--RTH----------TGEKPF~C~hC~kAFADR 228 (279)
T KOG2462|consen 188 CECGICGKAFSRPWLLQ-GHI--RTH----------TGEKPFSCPHCGKAFADR 228 (279)
T ss_pred cccccccccccchHHhh-ccc--ccc----------cCCCCccCCcccchhcch
Confidence 78888888887775543 332 110 12 246677777766553
No 457
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=22.54 E-value=2.9e+02 Score=24.71 Aligned_cols=71 Identities=17% Similarity=0.361 Sum_probs=43.1
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHHHHcccCCCchHHHHHHHHh-cCCHHHHHHhhhCCCh--------HHHHHHHHHHH
Q 003530 413 DIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKS-SGATISLVQFVEAPQN--------DLRLASIELIQ 483 (813)
Q Consensus 413 ~~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~--------~v~~~A~~~L~ 483 (813)
.+...|.+-|+..++.++.+++++|-.||..... ..+..+++ ...|..+.++-..+++ .||..|-.++.
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~--~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNS--DFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCH--HHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 5567777778888899999999999999987542 33333322 2334444443332222 45555555555
Q ss_pred Hh
Q 003530 484 NL 485 (813)
Q Consensus 484 ~L 485 (813)
.|
T Consensus 116 ~i 117 (122)
T cd03572 116 AI 117 (122)
T ss_pred HH
Confidence 44
No 458
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=22.46 E-value=6.8e+02 Score=24.18 Aligned_cols=71 Identities=15% Similarity=0.181 Sum_probs=43.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccCcchhhhhhcCCCHHHHHHHhccCcHHHHHHHHHHHHHhhcC
Q 003530 152 IPMIIDMLKSSSRKVRCTALETLRIVVEEDDDNKEILGQGDTVRTIVKFLSHELSREREEAVSLLYELSKS 222 (813)
Q Consensus 152 i~~Lv~lL~s~~~~~~~~al~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~ 222 (813)
.|.+++=|...+..-+.-|...+..+.......+-.=+-...|.+|-+.|++.++++...++.+|..|...
T Consensus 40 Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 40 LPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred HHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 44555555544444455555555555443112222222234567777888999999999999999999543
No 459
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=22.33 E-value=2e+03 Score=29.34 Aligned_cols=139 Identities=13% Similarity=0.102 Sum_probs=77.3
Q ss_pred CCCHHHHHHHHHHHHhhccCCccHHHHH----HcCChHHHHHHHcc-CCHHHHHHHHHHHHHhcCCchhHHHHHhhhHHH
Q 003530 247 SENLLTVEKAEKTLANLEKCENNVRQMA----ENGRLQPLLTQILE-GPQETKLSLAAFLGDLALNSDVKVLVARTVGSC 321 (813)
Q Consensus 247 s~~~~~~~~a~~~L~~L~~~~~~~~~i~----~~G~i~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~gi~~ 321 (813)
+.+..+...|+..|+.|+..--.+..+. +...+.|+..++.. .+.++++..+.++.++..... ..| ..|=+.
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~--~nI-kSGWkt 1224 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV--NNV-KSGWKS 1224 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH--hhh-hcCcHH
Confidence 4567788888888888764211111111 22456688777764 477999999999988754221 112 225455
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHhhCCcccHHHHH--HcCChHHHHHHHhccCCCCCChhHHHHHHHHHHHH
Q 003530 322 LINIMK----SGNMQAREAALKALNQISSCEPSAKVLI--HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANV 390 (813)
Q Consensus 322 Lv~lL~----~~~~~~~~~a~~aL~~Ls~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~~~~~~a~~~L~nL 390 (813)
+..+|. +.++.+...|..++..+....- ..+. ..+...-+|..|..-..+.....+--.|+..|+++
T Consensus 1225 IF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f--~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1225 MFMVFTTAAYDDHKNIVLLAFEIIEKIIREYF--PYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHhhh--hhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHH
Confidence 555554 4567788888888877765311 0010 01233334444432221112355666788888876
No 460
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=21.99 E-value=37 Score=24.50 Aligned_cols=14 Identities=36% Similarity=0.788 Sum_probs=8.5
Q ss_pred CCCCCceecccccc
Q 003530 27 EPIYDAFVCPLTKQ 40 (813)
Q Consensus 27 ~~~~~~~~Cpi~~~ 40 (813)
.+.|++++||+|+-
T Consensus 29 ~~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 29 EDLPDDWVCPVCGA 42 (47)
T ss_dssp GGS-TT-B-TTTSS
T ss_pred HHCCCCCcCcCCCC
Confidence 45688999999974
No 461
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.59 E-value=1.2e+03 Score=26.31 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=71.0
Q ss_pred CCCHHHHHHHHHHHHhhccC-CccHHHHHHcCChHHHHHHHccC-CHHHHHHHHHHHHHhcCCchhHHHHHhh--hHHHH
Q 003530 247 SENLLTVEKAEKTLANLEKC-ENNVRQMAENGRLQPLLTQILEG-PQETKLSLAAFLGDLALNSDVKVLVART--VGSCL 322 (813)
Q Consensus 247 s~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~G~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~--gi~~L 322 (813)
+++..++..|+..|.|.+.. ++-+..... -.++.++.-|.++ +.+|.-.+..+|..+...-.++....-. ..-.+
T Consensus 269 dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrl 347 (533)
T KOG2032|consen 269 DPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRL 347 (533)
T ss_pred CchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHH
Confidence 45567888899999998655 443333322 2345555555444 6788888887777765422222211111 12355
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhCC--cccHHHHHH--cCChHHHHHHHhc
Q 003530 323 INIMKSGNMQAREAALKALNQISSC--EPSAKVLIH--AGILPPLVKDLFT 369 (813)
Q Consensus 323 v~lL~~~~~~~~~~a~~aL~~Ls~~--~~~~~~i~~--~g~i~~Lv~lL~~ 369 (813)
..++.+.+++++.++...+..|+.. .+.+..+.+ .+...+++-.|..
T Consensus 348 R~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d 398 (533)
T KOG2032|consen 348 RTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQD 398 (533)
T ss_pred HHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCC
Confidence 6677888999999998888888763 244444443 2233344444443
No 462
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=21.25 E-value=3.3e+02 Score=22.47 Aligned_cols=67 Identities=18% Similarity=0.234 Sum_probs=48.1
Q ss_pred hccchHHHHHhhc-cCchhHHHHHHHHHHhhhhcCcchhhHHHHHHhhcCcHHHHHHHhh---cCChHHHHHHHHHHHH
Q 003530 682 EGHAVEKLIALLD-HTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLE---KRTENLQRRAVWVVER 756 (813)
Q Consensus 682 ~~gai~~Lv~lL~-~~~~~v~~~A~~AL~~L~~~~~~~~~~~~~i~~~~~v~~L~~ll~~---~~~~~~~~~a~~aL~~ 756 (813)
+...+.|+..++. ..+.+||+..+..+.+++.... ..| ..|.+.++.++.. .+++++-..|...++.
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~------~~i--~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG------ENI--KSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH------HHH--HhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 4567899999975 6789999999999999986432 223 2568888888742 3456666777666553
No 463
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=21.19 E-value=3.3e+02 Score=27.34 Aligned_cols=83 Identities=14% Similarity=0.123 Sum_probs=56.5
Q ss_pred HHHHHHhhhhcCcchhhHHHHHHhhcCcHHHHHHHhhcCChHHHHHHHHHHHHHHcchhhhhhhcCCCcchHHHHHHhhh
Q 003530 704 SLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQH 783 (813)
Q Consensus 704 A~~AL~~L~~~~~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~~a~~aL~~i~~~~~~~~~~~~~~~~~~~Lv~~l~~ 783 (813)
--.-|+.|+.++. |...+.+.+....+..++. ..+.+ ..+.-|+..-+ |+.++..-..|-.+|.+
T Consensus 143 Yf~~IG~lS~~~~----Gl~lLe~~~if~~l~~i~~-~~~~~------~l~klil~~LD----Y~~~~~~R~iLsKaLt~ 207 (226)
T PF14666_consen 143 YFLFIGVLSSTPN----GLKLLERWNIFTMLYHIFS-LSSRD------DLLKLILSSLD----YSVDGHPRIILSKALTS 207 (226)
T ss_pred HHHHHHHHhCChh----HHHHHHHCCHHHHHHHHHc-cCchH------HHHHHHHhhCC----CCCccHHHHHHHHHHhc
Confidence 3445677776653 8889999999999999884 44321 22222332223 33444444568899999
Q ss_pred cCchhHHHHHHHHHHhcc
Q 003530 784 ADYRTRQIAERALKHIDK 801 (813)
Q Consensus 784 ~~~~~~~~Aa~~L~~l~~ 801 (813)
++..+|..|.+-|+.+-+
T Consensus 208 ~s~~iRl~aT~~L~~llr 225 (226)
T PF14666_consen 208 GSESIRLYATKHLRVLLR 225 (226)
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999999988753
No 464
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=21.16 E-value=76 Score=38.84 Aligned_cols=48 Identities=19% Similarity=0.300 Sum_probs=35.3
Q ss_pred CceecccccccC-----CCcee--cCCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCCC
Q 003530 31 DAFVCPLTKQVM-----RDPVT--LENGQTFEREAIEKWFKECRENGRKPVCPLTQKELR 83 (813)
Q Consensus 31 ~~~~Cpi~~~~m-----~dpv~--~~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~ 83 (813)
..-.|.||++-. -||-+ -.||.-.||.|.+-=.+ .|+ ..||.|+..+.
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~----~g~-~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERS----EGN-QCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhh----cCC-ccCCccCCchh
Confidence 447899999863 55655 36777799999854444 375 89999998765
No 465
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=21.15 E-value=99 Score=29.53 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=12.6
Q ss_pred CCCCCCCCcCCCCCCC
Q 003530 72 KPVCPLTQKELRSTDL 87 (813)
Q Consensus 72 ~~~CP~t~~~l~~~~l 87 (813)
.++||.||+.+...+.
T Consensus 132 ~F~Cp~Cg~~L~~~d~ 147 (176)
T COG1675 132 GFTCPKCGEDLEEYDS 147 (176)
T ss_pred CCCCCCCCchhhhccc
Confidence 3899999998866554
No 466
>PRK04023 DNA polymerase II large subunit; Validated
Probab=21.06 E-value=91 Score=37.82 Aligned_cols=45 Identities=11% Similarity=-0.071 Sum_probs=26.0
Q ss_pred CceecccccccCCCceecCCCc-----hhcHHHHHHHHHHhhhCCCCCCCCCCCcCCC
Q 003530 31 DAFVCPLTKQVMRDPVTLENGQ-----TFEREAIEKWFKECRENGRKPVCPLTQKELR 83 (813)
Q Consensus 31 ~~~~Cpi~~~~m~dpv~~~~g~-----t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l~ 83 (813)
..+.||-|+....-..=-.||. .||..| .+. .+ ...||.|+....
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~C--G~~-----~~-~y~CPKCG~El~ 674 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRC--GIE-----VE-EDECEKCGREPT 674 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCccc--cCc-----CC-CCcCCCCCCCCC
Confidence 4478888888752211123663 477777 111 23 378999987654
No 467
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=21.00 E-value=88 Score=22.05 Aligned_cols=39 Identities=15% Similarity=0.431 Sum_probs=18.2
Q ss_pred ccccccCCCceec---CCCchhcHHHHHHHHHHhhhCCCCCCCCCC
Q 003530 36 PLTKQVMRDPVTL---ENGQTFEREAIEKWFKECRENGRKPVCPLT 78 (813)
Q Consensus 36 pi~~~~m~dpv~~---~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t 78 (813)
-+|.++..-=+.= .|+-.+=..|+..||.. ... ..||.|
T Consensus 2 ~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~---~~~-~~CP~C 43 (43)
T PF08746_consen 2 EACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRH---RSN-PKCPNC 43 (43)
T ss_dssp TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT----SS--B-TTT
T ss_pred cccchhHeeeccCCCCccCchHHHHHHHHHHhc---CCC-CCCcCC
Confidence 3444444333332 36666777899999986 222 479976
No 468
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=20.93 E-value=48 Score=24.25 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=12.5
Q ss_pred CCCCCCCCcCCCCCCCcccHhhHHHHHHH
Q 003530 72 KPVCPLTQKELRSTDLNPSIALRNTIEEW 100 (813)
Q Consensus 72 ~~~CP~t~~~l~~~~l~pn~~l~~~I~~~ 100 (813)
+.+||+|+..+ .....|++..+.|
T Consensus 24 PatCP~C~a~~-----~~srnLrRHle~~ 47 (54)
T PF09237_consen 24 PATCPICGAVI-----RQSRNLRRHLEIR 47 (54)
T ss_dssp -EE-TTT--EE-----SSHHHHHHHHHHH
T ss_pred CCCCCcchhhc-----cchhhHHHHHHHH
Confidence 57899997654 3445566655543
No 469
>PRK01343 zinc-binding protein; Provisional
Probab=20.61 E-value=1.2e+02 Score=22.92 Aligned_cols=34 Identities=9% Similarity=0.177 Sum_probs=22.0
Q ss_pred ceecccccccCCCceecCCCchhcHHHHHHHHHH
Q 003530 32 AFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKE 65 (813)
Q Consensus 32 ~~~Cpi~~~~m~dpv~~~~g~t~~r~~i~~~~~~ 65 (813)
...||+|+..+..+..--|....-.-=+.+|+.+
T Consensus 9 ~~~CP~C~k~~~~~~rPFCS~RC~~iDLg~W~~e 42 (57)
T PRK01343 9 TRPCPECGKPSTREAYPFCSERCRDIDLNRWLSG 42 (57)
T ss_pred CCcCCCCCCcCcCCCCcccCHHHhhhhHHHHhCC
Confidence 4789999998776654444433333346788864
No 470
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=20.51 E-value=1.7e+02 Score=35.26 Aligned_cols=128 Identities=16% Similarity=0.155 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHHHHhcCCCCcccccCCCCccccchhhHHHHHHhhc-CCChHHHHHHHHHHHHcccCCCchHHHHHHHH
Q 003530 377 MRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS-NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIK 455 (813)
Q Consensus 377 ~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~ 455 (813)
+.++..+.-+|+++|-..+. +. ...+|.|++-|. +....+|-+.+-+++.+|.+-. ++.
T Consensus 945 ~~vra~~vvTlakmcLah~~------------La-Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-------am~ 1004 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDR------------LA-KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT-------AMT 1004 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhH------------HH-HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH-------HHH
Confidence 45666777788888875432 11 356888888876 5666777777777777776521 111
Q ss_pred hcCCHHHHHHhhhCCChHHHHHHHHHHHHhCCCCCHHHHHHHhcccccHHHHHHhhhcCCCChHHHHHHHHHHhcCCC
Q 003530 456 SSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPE 533 (813)
Q Consensus 456 ~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~L~~ 533 (813)
..-++.+-.-|.++++-+|+.+..+|.+|-. .++..+-.. =.+.-+..++..+. +++..|=..++.+-.
T Consensus 1005 -d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq---~~~vKw~G~--Lf~Rf~l~l~D~~e---dIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1005 -DRYIPMIAASLCDPSVIVRRQTIILLARLLQ---FGIVKWNGE--LFIRFMLALLDANE---DIRNDAKFYISEVLQ 1073 (1529)
T ss_pred -HHhhHHHHHHhcCchHHHHHHHHHHHHHHHh---hhhhhcchh--hHHHHHHHHcccCH---HHHHHHHHHHHHHHh
Confidence 1347888889999999999999999988773 222222111 13444555554443 788888777777644
No 471
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=20.40 E-value=74 Score=32.38 Aligned_cols=13 Identities=15% Similarity=0.268 Sum_probs=9.6
Q ss_pred CCCCCCCCcCCCC
Q 003530 72 KPVCPLTQKELRS 84 (813)
Q Consensus 72 ~~~CP~t~~~l~~ 84 (813)
+..|++||+.|..
T Consensus 187 ~c~C~iCGKaFSR 199 (279)
T KOG2462|consen 187 PCECGICGKAFSR 199 (279)
T ss_pred Ccccccccccccc
Confidence 3679999887753
No 472
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.23 E-value=45 Score=36.70 Aligned_cols=70 Identities=26% Similarity=0.298 Sum_probs=48.3
Q ss_pred CCCCCceecccc-cccCCCceec--CCCchhcHHHHHHHHHHhhhCCCCCCCCCCCcCC-CCCCCcccHhhHHHHHHHHH
Q 003530 27 EPIYDAFVCPLT-KQVMRDPVTL--ENGQTFEREAIEKWFKECRENGRKPVCPLTQKEL-RSTDLNPSIALRNTIEEWNA 102 (813)
Q Consensus 27 ~~~~~~~~Cpi~-~~~m~dpv~~--~~g~t~~r~~i~~~~~~~~~~~~~~~CP~t~~~l-~~~~l~pn~~l~~~I~~~~~ 102 (813)
...++...||+| .+.|.|-+++ .|+.+||-.||...+.+ ..||.|+..- ..-.+.++..++..+..-.+
T Consensus 214 ~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~-------~~~~~c~~~~~~~~~~~~p~~~r~~~n~~~a 286 (448)
T KOG0314|consen 214 GELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALIS-------KSMCVCGASNVLADDLLPPKTLRDTINRILA 286 (448)
T ss_pred ccCCccccCceecchhhHHHHHhhhhhcccCCcccccccccc-------ccCCcchhhcccccccCCchhhHHHHHHHHh
Confidence 344567999999 9999999886 67889999999998875 4566665422 22345566666555555444
Q ss_pred h
Q 003530 103 R 103 (813)
Q Consensus 103 ~ 103 (813)
.
T Consensus 287 ~ 287 (448)
T KOG0314|consen 287 S 287 (448)
T ss_pred h
Confidence 3
No 473
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=20.01 E-value=61 Score=28.00 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=20.5
Q ss_pred hHHHHHhhccCchhHHHHHHHHHHhhh
Q 003530 686 VEKLIALLDHTNEKVVEASLAALSTVI 712 (813)
Q Consensus 686 i~~Lv~lL~~~~~~v~~~A~~AL~~L~ 712 (813)
-..|+.||+++|+.||..|+..+..+.
T Consensus 49 r~aLl~LL~hpn~~VRl~AA~~~L~~~ 75 (106)
T PF09450_consen 49 RDALLPLLKHPNMQVRLWAAAHTLRYA 75 (106)
T ss_dssp GGGGGGGGGSS-HHHHHHHHHTTTTT-
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHhC
Confidence 345899999999999999987666554
Done!