BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003531
(812 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F21|A Chain A, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|B Chain B, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|C Chain C, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|D Chain D, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|E Chain E, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|F Chain F, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|G Chain G, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|H Chain H, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
Length = 246
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 170 SLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERDLVSWNTIVAGFAQNGFAELALDLVTR 229
SLD ++ VV++ I + K+ D + + S N I+AGF+Q G + T
Sbjct: 95 SLDANSLNRVVDVEGINSSIAKVNKLIDSQVNQGIASENIILAGFSQGGI----IATYTA 150
Query: 230 MHEEGRRGDFITIVSILPAVAN 251
+ + + G + + + LPA N
Sbjct: 151 ITSQRKLGGIMALSTYLPAWDN 172
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 61/129 (47%), Gaps = 7/129 (5%)
Query: 307 SWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEAL-HACADLGDLERGIFVHKL 365
+W ++ AY + G+ +EA+ +QK L+ ++P + L +A GD + I ++
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 366 LDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSK---LQGKTLVSWNAMILGYAQNGRV 422
+L + + N L + Y K D A + + K L ++ +W + Y + G
Sbjct: 61 ALELDPRSAEAWYN-LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 119
Query: 423 NEALNYFCK 431
+EA+ Y+ K
Sbjct: 120 DEAIEYYQK 128
>pdb|1IMJ|A Chain A, Crystal Structure Of The Human Ccg1/tafii250-interacting
Factor B (cib)
Length = 210
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 349 ACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYS 386
A A +G+L G F+ ++D L+LG V ++ SL MYS
Sbjct: 80 APAPIGELAPGSFLAAVVDALELGPPVVISPSLSGMYS 117
>pdb|4B91|A Chain A, Crystal Structure Of Truncated Human Crmp-5
pdb|4B91|B Chain B, Crystal Structure Of Truncated Human Crmp-5
pdb|4B92|A Chain A, Crystal Structure Of Truncated Human Crmp-5 Soaked With Zn
pdb|4B92|B Chain B, Crystal Structure Of Truncated Human Crmp-5 Soaked With Zn
Length = 484
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 278 TALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQG-- 335
T+LVD Y KC + ++ D + W + A +E E+ + FQ +
Sbjct: 108 TSLVDAYEKCRGLADPKVCCDYALHVGITWWAPKVKAEMETLVREKGVNSFQMFMTYKDL 167
Query: 336 VEPTNVTIMEALHACADLGDLER 358
+ + + LHAC D+G + R
Sbjct: 168 YMLRDSELYQVLHACKDIGAIAR 190
>pdb|4B90|A Chain A, Crystal Structure Of Wt Human Crmp-5
pdb|4B90|B Chain B, Crystal Structure Of Wt Human Crmp-5
Length = 586
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 278 TALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQG-- 335
T+LVD Y KC + ++ D + W + A +E E+ + FQ +
Sbjct: 129 TSLVDAYEKCRGLADPKVCCDYALHVGITWWAPKVKAEMETLVREKGVNSFQMFMTYKDL 188
Query: 336 VEPTNVTIMEALHACADLGDLER 358
+ + + LHAC D+G + R
Sbjct: 189 YMLRDSELYQVLHACKDIGAIAR 211
>pdb|3NVA|A Chain A, Dimeric Form Of Ctp Synthase From Sulfolobus Solfataricus
pdb|3NVA|B Chain B, Dimeric Form Of Ctp Synthase From Sulfolobus Solfataricus
Length = 535
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 240 ITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARL 295
IT+V I V ++ SL +AV + G D+++ V ALV+ + G ++T L
Sbjct: 138 ITLVEIGGTVGDIESLPFLEAVRQLKLEEGEDNVIFVHIALVEYLSVTGELKTKPL 193
>pdb|2PTF|A Chain A, Crystal Structure Of Protein Mth_863 From Methanobacterium
Thermoautotrophicum Bound To Fmn
pdb|2PTF|B Chain B, Crystal Structure Of Protein Mth_863 From Methanobacterium
Thermoautotrophicum Bound To Fmn
Length = 233
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 323 EAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKL-GTDVSMTNSL 381
+ R + +L+ G NVT+ + + LGDLE +F H D L L G D T +
Sbjct: 70 QGTRTVENVLNNGRFTVNVTLDPLIFTDSTLGDLEEDMFSH-YRDFLHLRGADAFFTAEV 128
Query: 382 ISMYSKCKKVDR 393
+S+ K K DR
Sbjct: 129 VSV-KKLVKRDR 139
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,877,045
Number of Sequences: 62578
Number of extensions: 976467
Number of successful extensions: 2221
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2212
Number of HSP's gapped (non-prelim): 17
length of query: 812
length of database: 14,973,337
effective HSP length: 107
effective length of query: 705
effective length of database: 8,277,491
effective search space: 5835631155
effective search space used: 5835631155
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)